chr1	941103	941104	chr1:941104:C:T	rs118109273	C	T	c	Sox1_MA0870.1	29	0	-	0	0	.
chr1	941118	941119	chr1:941119:A:G	rs4372192	A	G	g	Sox1_MA0870.1	14	1	-	3.494113592350398	1.9831041878689932	GACAACAGCAGTGAT
chr1	1153881	1153882	chr1:1153882:A:G	rs4970358	A	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	1890284	1890285	chr1:1890285:G:A	chr1:1890285:G:A	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	2274945	2274946	chr1:2274946:C:T	rs72642130	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	2402821	2402822	chr1:2402822:G:T	rs72642191	G	T	g	Sox1_MA0870.1	16	0	-	0	0	.
chr1	2541698	2541699	chr1:2541699:C:T	rs374224216	C	T	.	Sox1_MA0870.1	21	0	+	0	0	.
chr1	2636985	2636986	chr1:2636986:T:C	rs4648661	T	C	T	Sox1_MA0870.1	3	1	-	4.203050826304784	-2.6975388408924412	CACACTTCGATTGGC
chr1	2646173	2646174	chr1:2646174:T:C	rs58546948	T	C	C	Sox1_MA0870.1	13	1	+	3.620276210816863	1.4426209133658694	AGCAATTGCCTTGTG
chr1	2806779	2806780	chr1:2806780:C:T	rs4648360	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr1	2974511	2974512	chr1:2974512:C:T	rs118015861	C	T	C	Sox1_MA0870.1	6	1	-	3.1892975395231073	4.7279042326638265	GACTCTGCCAGTGTC
chr1	3135700	3135701	chr1:3135701:A:C	rs7535865	A	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	3615519	3615520	chr1:3615520:C:T	rs61026690	C	T	C	Sox1_MA0870.1	2	1	+	4.506086415967983	-2.4026683633472357	CCCAATTCCACTGTT
chr1	3616999	3617000	chr1:3617000:C:A	rs55728961	C	A	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	3683854	3683855	chr1:3683855:A:G	rs3765709	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	3712098	3712099	chr1:3712099:A:G	rs6424089	A	G	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	3712112	3712113	chr1:3712113:A:G	rs6424090	A	G	G	Sox1_MA0870.1	9	1	+	4.655955302285564	-2.252799477029657	ATCAATTGCATTATC
chr1	3805044	3805045	chr1:3805045:G:A	rs12127399	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr1	3821649	3821650	chr1:3821650:T:C	rs4648413	T	C	T	Sox1_MA0870.1	11	1	+	3.5411127051972753	-1.414282280613059	CACACCAGCATTGCC
chr1	3878826	3878827	chr1:3878827:T:C	rs10737189	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr1	3969028	3969029	chr1:3969029:A:C	rs60369876	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	3969070	3969071	chr1:3969071:G:T	rs79399453	G	T	G	Sox1_MA0870.1	27	0	+	0	0	.
chr1	4298845	4298846	chr1:4298846:C:T	rs115293227	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr1	4306573	4306574	chr1:4306574:G:A	rs1845634	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	4306584	4306585	chr1:4306585:T:A	rs11804880	T	A	T	Sox1_MA0870.1	7	1	+	4.0528925665547995	4.494482446639214	AACAATATCAGTACA
chr1	4307112	4307113	chr1:4307113:A:G	rs116019360	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr1	4314510	4314511	chr1:4314511:G:C	rs12406634	G	C	G	Sox1_MA0870.1	31	0	+	0	0	.
chr1	4400605	4400606	chr1:4400606:G:A	rs1870505	G	A	G	Sox1_MA0870.1	2	1	-	3.5079253958704997	-3.4008293834447203	CACACTGGCCTTGCT
chr1	4477073	4477074	chr1:4477074:G:T	rs12138346	G	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr1	4496131	4496132	chr1:4496132:A:G	rs168406	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	4588801	4588802	chr1:4588802:C:T	rs549150	C	T	T	Sox1_MA0870.1	2	1	+	8.055064783452591	1.1463100041373713	TACAATTGTATTGCT
chr1	4615494	4615495	chr1:4615495:G:A	rs4654569	G	A	G	Sox1_MA0870.1	7	1	-	3.1873777610722933	3.17554870852392	CACACTGCCAGCGCT
chr1	4622754	4622755	chr1:4622755:A:G	rs12028575	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr1	4673178	4673179	chr1:4673179:T:C	rs4654585	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr1	4706590	4706591	chr1:4706591:C:T	rs79840716	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	4706591	4706592	chr1:4706592:C:T	rs76980558	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	5003232	5003233	chr1:5003233:G:A	rs10915307	G	A	C	Sox1_MA0870.1	29	0	-	0	0	.
chr1	5196498	5196499	chr1:5196499:C:A	rs66644836	C	A	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	5239120	5239121	chr1:5239121:G:A	rs550558	G	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	5375975	5375976	chr1:5375976:C:T	rs36165769	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr1	5516991	5516992	chr1:5516992:T:C	rs72640661	T	C	T	Sox1_MA0870.1	5	1	+	6.570133814289808	-0.33303094435795266	ACCCATAGCATTGTA
chr1	5533911	5533912	chr1:5533912:A:G	rs4845829	A	G	G	Sox1_MA0870.1	9	1	+	4.281603391511742	-2.627151387803479	CACACTGACAATGTA
chr1	5671679	5671680	chr1:5671680:A:G	rs77948710	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr1	5755080	5755081	chr1:5755081:A:C	rs61763323	A	C	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	5874319	5874320	chr1:5874320:C:T	rs112284157	C	T	.	Sox1_MA0870.1	25	0	+	0	0	.
chr1	5940217	5940218	chr1:5940218:T:C	rs57752624	T	C	T	Sox1_MA0870.1	9	1	-	4.191041807105779	-2.717712972209441	GACAATGGCATTCAT
chr1	5975452	5975453	chr1:5975453:C:T	rs4908638	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	5992575	5992576	chr1:5992576:G:A	rs939873867	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr1	5994440	5994441	chr1:5994441:C:G	rs775936727	C	G	C	Sox1_MA0870.1	24	0	-	0	0	.
chr1	6472256	6472257	chr1:6472257:A:G	rs114359340	A	G	A	Sox1_MA0870.1	11	1	-	3.5206290030212273	-1.4347659827891066	AACACTTGCTGTGTG
chr1	6524359	6524360	chr1:6524360:C:A	rs11809957	C	A	C	Sox1_MA0870.1	17	0	+	0	0	.
chr1	6762349	6762350	chr1:6762350:T:A	rs35916265	T	A	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	6953161	6953162	chr1:6953162:C:T	rs114873190	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	6954479	6954480	chr1:6954480:C:G	rs12239076	C	G	C	Sox1_MA0870.1	27	0	-	0	0	.
chr1	7053001	7053002	chr1:7053002:T:G	rs4376764	T	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr1	7176749	7176750	chr1:7176750:A:G	rs6680365	A	G	G	Sox1_MA0870.1	11	1	-	5.551303303352843	0.5959083175425086	CACATTGTCATTGCT
chr1	7302931	7302932	chr1:7302932:A:G	rs12410983	A	G	A	Sox1_MA0870.1	14	1	+	4.424216734613823	4.599547971680867	GGCAATGACAGTGCA
chr1	7829880	7829881	chr1:7829881:C:T	rs2640908	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	7955499	7955500	chr1:7955500:A:G	rs161799	A	G	A	Sox1_MA0870.1	1	1	+	3.2886594828350564	-0.809631172558085	AACACTGTCAATGCC
chr1	8028888	8028889	chr1:8028889:G:A	rs11800783	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr1	8098106	8098107	chr1:8098107:G:A	rs114596225	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	8126778	8126779	chr1:8126779:C:A	rs61774165	C	A	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	8135199	8135200	chr1:8135200:A:G	rs17032187	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	8239048	8239049	chr1:8239049:G:A	rs6577475	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	8266907	8266908	chr1:8266908:G:A	rs72862649	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr1	8396852	8396853	chr1:8396853:A:G	rs75969503	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr1	8536682	8536683	chr1:8536683:T:G	rs17032657	T	G	T	Sox1_MA0870.1	24	0	+	0	0	.
chr1	8537945	8537946	chr1:8537946:C:T	rs10492966	C	T	C	Sox1_MA0870.1	13	1	+	3.7445598270706664	5.92221512452166	CAAAATTTCAGTGCT
chr1	8880291	8880292	chr1:8880292:A:G	rs985644401	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr1	8880295	8880296	chr1:8880296:C:T	rs910987357	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr1	8880606	8880607	chr1:8880607:T:A	rs116550874	T	A	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	8938553	8938554	chr1:8938554:C:A	rs2781086	C	A	C	Sox1_MA0870.1	23	0	+	0	0	.
chr1	9083229	9083230	chr1:9083230:T:A	rs12096072	T	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr1	9083272	9083273	chr1:9083273:T:C	rs770036	T	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	9086280	9086281	chr1:9086281:G:A	rs12402661	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr1	9243553	9243554	chr1:9243554:C:T	rs185938160	C	T	c	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	9356091	9356092	chr1:9356092:G:A	rs9435243	G	A	G	Sox1_MA0870.1	0	1	-	4.857788607440643	4.155411850293163	CACAAAGACATTGAG
chr1	9438742	9438743	chr1:9438743:C:T	rs762504428	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr1	9439186	9439187	chr1:9439187:G:A	rs9787285	G	A	G	Sox1_MA0870.1	3	1	-	4.975727511309021	4.547197130269861	ACCCCTGGCATTGTT
chr1	9450364	9450365	chr1:9450365:C:T	rs375947470	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr1	9699656	9699657	chr1:9699657:T:C	rs12028908	T	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	9728094	9728095	chr1:9728095:G:A	rs1141402	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	9840104	9840105	chr1:9840105:C:T	rs10492968	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr1	9991106	9991107	chr1:9991107:C:T	rs35232720	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	10063979	10063980	chr1:10063980:T:C	rs57216908	T	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	10083491	10083492	chr1:10083492:T:A	rs79980202	T	A	T	Sox1_MA0870.1	33	0	-	0	0	.
chr1	10108020	10108021	chr1:10108021:A:G	rs114515417	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr1	10553502	10553503	chr1:10553503:A:G	rs10864463	A	G	G	Sox1_MA0870.1	3	1	+	5.9823232475336905	-0.9182664196635374	GACACCGACATTGTT
chr1	10564410	10564411	chr1:10564411:A:G	rs6663898	A	G	A	Sox1_MA0870.1	4	1	+	7.902553176022156	1.1249749218519671	TACAATTACCTTGTT
chr1	10705164	10705165	chr1:10705165:G:A	rs570279709	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr1	10961333	10961334	chr1:10961334:C:T	chr1:10961334:C:T	C	T	c	Sox1_MA0870.1	0	1	-	3.3831447865520325	4.725267929358785	GCCAAAGCCAGTGTT
chr1	10972157	10972158	chr1:10972158:T:C	rs72644041	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr1	11012158	11012159	chr1:11012159:T:G	rs774558919	T	G	t	Sox1_MA0870.1	6	1	-	10.814275997438918	5.425076994605716	AACAATAACTTTGTT
chr1	11182737	11182738	chr1:11182738:A:T	rs72871498	A	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr1	11460058	11460059	chr1:11460059:C:T	rs7551815	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	11498143	11498144	chr1:11498144:G:C	rs7537387	G	C	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	11979870	11979871	chr1:11979871:G:C	rs564944035	G	C	g	Sox1_MA0870.1	17	0	+	0	0	.
chr1	12125604	12125605	chr1:12125605:C:T	rs747338470	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	12125716	12125717	chr1:12125717:A:G	rs11121876	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr1	12269723	12269724	chr1:12269724:T:C	rs147453259	T	C	T	Sox1_MA0870.1	9	1	-	4.860782480458839	-2.0479722988563798	GAAAATACTATTGTT
chr1	12406092	12406093	chr1:12406093:C:T	rs141028350	C	T	C	Sox1_MA0870.1	8	1	+	4.776041259875743	0.5944317132384599	AACAATTACATGGAG
chr1	12437881	12437882	chr1:12437882:G:A	rs1403278786	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr1	12573805	12573806	chr1:12573806:C:T	rs147989946	C	T	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	12600349	12600350	chr1:12600350:T:C	rs144146867	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	12670403	12670404	chr1:12670404:G:A	rs1857539	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr1	13226775	13226776	chr1:13226776:A:G	rs375596674	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr1	13227968	13227969	chr1:13227969:C:T	rs373542647	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr1	13240606	13240607	chr1:13240607:C:A	rs560752577	C	A	C	Sox1_MA0870.1	21	0	-	0	0	.
chr1	13682718	13682719	chr1:13682719:T:C	rs79514290	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr1	14013689	14013690	chr1:14013690:C:A	rs17353372	C	A	C	Sox1_MA0870.1	14	1	-	4.196533036803556	5.92221512452166	CACAATTTCAGTTTG
chr1	14016068	14016069	chr1:14016069:G:T	rs140548534	G	T	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	14085310	14085311	chr1:14085311:T:C	rs72861288	T	C	T	Sox1_MA0870.1	11	1	+	8.888969680445573	3.9335746946352392	ATCAATTTCAGTGTA
chr1	14091952	14091953	chr1:14091953:T:C	rs10928004	T	C	t	Sox1_MA0870.1	20	0	-	0	0	.
chr1	14113796	14113797	chr1:14113797:A:G	rs12026570	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	14113798	14113799	chr1:14113799:A:T	rs12026571	A	T	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	14142405	14142406	chr1:14142406:T:C	rs10803463	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr1	14151448	14151449	chr1:14151449:G:A	rs929125	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	14181033	14181034	chr1:14181034:G:A	rs526188	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	14181046	14181047	chr1:14181047:A:C	rs675997	A	C	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	14397248	14397249	chr1:14397249:A:G	rs61125940	A	G	A	Sox1_MA0870.1	11	1	-	6.112530376756604	1.1571353909462703	GAAACTTCCATTGTT
chr1	14417475	14417476	chr1:14417476:A:G	rs4573512	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr1	14614103	14614104	chr1:14614104:T:G	rs34103159	T	G	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	14738451	14738452	chr1:14738452:C:T	rs10927525	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr1	14815444	14815445	chr1:14815445:G:A	rs76100808	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	14847338	14847339	chr1:14847339:C:T	rs191124984	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr1	14849360	14849361	chr1:14849361:A:G	rs56293671	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	15020214	15020215	chr1:15020215:G:A	rs61772181	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	15196090	15196091	chr1:15196091:T:C	rs1883756	T	C	C	Sox1_MA0870.1	10	1	+	4.029479281343603	-2.7792178027927315	GACAATTGCATGGCA
chr1	15240306	15240307	chr1:15240307:C:T	rs4644485	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	15339750	15339751	chr1:15339751:T:C	rs140659484	T	C	T	Sox1_MA0870.1	9	1	-	5.952949590829229	-0.9558051884859922	CACCCTGTCATTGTC
chr1	15523856	15523857	chr1:15523857:C:T	rs4645988	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	15662461	15662462	chr1:15662462:G:A	rs1240333	G	A	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	15927009	15927010	chr1:15927010:A:G	rs17387101	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr1	16019834	16019835	chr1:16019835:C:T	rs74057554	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr1	16173389	16173390	chr1:16173390:A:C	rs6674349	A	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	16173417	16173418	chr1:16173418:C:T	rs6661012	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr1	16210855	16210856	chr1:16210856:A:G	rs558906191	A	G	A	Sox1_MA0870.1	7	1	+	5.654711496398265	5.257733168601758	AACAGTGACAGTGTC
chr1	16618253	16618254	chr1:16618254:A:G	rs12048800	A	G	.	Sox1_MA0870.1	11	1	+	7.324878462131371	7.324878462131371	AACACTGACATAGTT
chr1	16641380	16641381	chr1:16641381:G:A	rs12023583	G	A	.	Sox1_MA0870.1	13	1	-	7.502887693256537	9.680542990707531	GACACTTAGATTGCT
chr1	16721497	16721498	chr1:16721498:C:A	rs12030913	C	A	.	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	16725872	16725873	chr1:16725873:T:C	rs2419176	T	C	.	Sox1_MA0870.1	20	0	-	0	0	.
chr1	16725878	16725879	chr1:16725879:G:A	rs1235503722	G	A	.	Sox1_MA0870.1	14	1	-	4.891630422738281	6.402639827219685	TCCACTTTCAGTGTC
chr1	16727520	16727521	chr1:16727521:C:T	rs1301043315	C	T	.	Sox1_MA0870.1	12	1	-	5.8077233197494245	-1.1010314595657964	AACAATTGCATGGGT
chr1	16727526	16727527	chr1:16727527:A:C	rs866578967	A	C	.	Sox1_MA0870.1	6	1	-	5.8077233197494245	5.242165342323009	AACAATTGCATGGGT
chr1	16869719	16869720	chr1:16869720:C:T	rs147994864	C	T	c	Sox1_MA0870.1	25	0	+	0	0	.
chr1	16987186	16987187	chr1:16987187:G:A	rs148201608	G	A	.	Sox1_MA0870.1	26	0	-	0	0	.
chr1	17097637	17097638	chr1:17097638:T:C	rs2244949	T	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr1	17193919	17193920	chr1:17193920:A:T	rs12130274	A	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	17196325	17196326	chr1:17196326:C:T	rs754171	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr1	17253570	17253571	chr1:17253571:A:C	rs2977262	A	C	C	Sox1_MA0870.1	6	1	-	3.983253334903205	3.4176953574767888	CACACTTCCAGGGTT
chr1	17282049	17282050	chr1:17282050:C:G	rs3766301	C	G	C	Sox1_MA0870.1	32	0	+	0	0	.
chr1	17646548	17646549	chr1:17646549:C:T	rs55836024	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	17689049	17689050	chr1:17689050:A:G	rs34490715	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	17712686	17712687	chr1:17712687:C:A	rs6664873	C	A	A	Sox1_MA0870.1	8	1	-	6.094127539913381	5.683020986176436	AACAATGAGAGTGCA
chr1	17923248	17923249	chr1:17923249:C:T	rs12092756	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr1	18047244	18047245	chr1:18047245:T:C	rs1551478	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr1	18423106	18423107	chr1:18423107:T:G	rs6700748	T	G	G	Sox1_MA0870.1	9	1	-	4.514617544528711	-2.3941372347865078	AACAAAAAGAGTGCT
chr1	18432882	18432883	chr1:18432883:G:A	rs2222257	G	A	A	Sox1_MA0870.1	21	0	-	0	0	.
chr1	18448198	18448199	chr1:18448199:A:G	rs2946535	A	G	G	Sox1_MA0870.1	9	1	+	9.198783261635853	2.2900284823206314	GACAATGGCATTGAA
chr1	18497408	18497409	chr1:18497409:C:T	rs17351864	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	18866785	18866786	chr1:18866786:G:C	rs1427213414	G	C	G	Sox1_MA0870.1	20	0	+	0	0	.
chr1	18928839	18928840	chr1:18928840:C:T	rs56115287	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr1	19005581	19005582	chr1:19005582:A:G	rs7523455	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr1	19028682	19028683	chr1:19028683:G:A	rs9426715	G	A	G	Sox1_MA0870.1	8	1	-	3.188601787656169	-0.9930077589811134	AACACTGTCCTTGCC
chr1	19028688	19028689	chr1:19028689:G:A	rs9426716	G	A	G	Sox1_MA0870.1	2	1	-	3.188601787656169	-3.7201529916590514	AACACTGTCCTTGCC
chr1	19150154	19150155	chr1:19150155:G:C	rs2296107	G	C	G	Sox1_MA0870.1	14	1	-	5.783488152699764	5.568815469463066	GATAATAACATTGCC
chr1	19505574	19505575	chr1:19505575:A:G	rs115908591	A	G	A	Sox1_MA0870.1	13	1	-	6.2653587321724675	4.0877034347214725	ATCATTTCCATTGTT
chr1	19552329	19552330	chr1:19552330:C:T	rs116833051	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	19927813	19927814	chr1:19927814:G:A	rs7520018	G	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	19969825	19969826	chr1:19969826:C:T	rs17402685	C	T	C	Sox1_MA0870.1	12	1	-	4.675835776164647	-2.2329190031505735	AACAATAACAGAGCG
chr1	20071549	20071550	chr1:20071550:A:G	rs513246	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	20081687	20081688	chr1:20081688:G:T	rs11573253	G	T	G	Sox1_MA0870.1	33	0	-	0	0	.
chr1	20260920	20260921	chr1:20260921:T:C	rs10916739	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	20322662	20322663	chr1:20322663:A:G	rs10916765	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr1	20404353	20404354	chr1:20404354:A:G	rs11577874	A	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr1	20438751	20438752	chr1:20438752:G:A	rs55841684	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr1	20610166	20610167	chr1:20610167:C:T	rs12135846	C	T	C	Sox1_MA0870.1	13	1	+	6.485494068272962	8.663149365723957	ACCAATGACAGTGCC
chr1	21332941	21332942	chr1:21332942:C:T	rs11806544	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr1	21490871	21490872	chr1:21490872:A:G	rs75824579	A	G	.	Sox1_MA0870.1	4	1	+	4.789684997241393	-1.9878932569287953	CTCAATAACATTCTC
chr1	21490900	21490901	chr1:21490901:A:G	rs72659147	A	G	.	Sox1_MA0870.1	33	0	+	0	0	.
chr1	21538517	21538518	chr1:21538518:G:A	rs148777259	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	21538563	21538564	chr1:21538564:G:A	rs56754613	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr1	21574963	21574964	chr1:21574964:A:G	rs1697404	A	G	G	Sox1_MA0870.1	5	1	-	5.276998222112365	-1.6261665365353948	AACACTTCCCTTGCT
chr1	21662935	21662936	chr1:21662936:C:G	rs11806116	C	G	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	22254304	22254305	chr1:22254305:G:T	rs111501233	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr1	22268181	22268182	chr1:22268182:T:C	rs2505716	T	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	22268182	22268183	chr1:22268183:G:A	rs75868741	G	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	22273384	22273385	chr1:22273385:T:C	rs2143100	T	C	C	Sox1_MA0870.1	9	1	-	3.914067590124311	-2.99468718919091	AACAATCACATTTTC
chr1	22289310	22289311	chr1:22289311:A:G	rs17360519	A	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	22552518	22552519	chr1:22552519:G:A	rs61767281	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	22834529	22834530	chr1:22834530:T:C	rs56089435	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	22848485	22848486	chr1:22848486:A:G	rs139231842	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	22885287	22885288	chr1:22885288:C:T	rs916546766	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	23180066	23180067	chr1:23180067:C:A	rs76065586	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	23224865	23224866	chr1:23224866:A:G	rs4655151	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	23290906	23290907	chr1:23290907:C:G	rs628290	C	G	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	23351534	23351535	chr1:23351535:T:G	rs72659795	T	G	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	23554420	23554421	chr1:23554421:G:A	rs34671368	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	23562367	23562368	chr1:23562368:C:T	chr1:23562368:C:T	C	T	C	Sox1_MA0870.1	7	1	-	4.921112589023968	5.318090916820475	AAAAATAGGATTGTG
chr1	23562392	23562393	chr1:23562393:C:T	chr1:23562393:C:T	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	23757158	23757159	chr1:23757159:T:C	rs2076346	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	23913464	23913465	chr1:23913465:G:T	chr1:23913465:G:T	G	T	G	Sox1_MA0870.1	19	0	-	0	0	.
chr1	24028234	24028235	chr1:24028235:A:G	rs36111049	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr1	24187660	24187661	chr1:24187661:G:A	rs141858161	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	24343938	24343939	chr1:24343939:T:C	rs12064986	T	C	T	Sox1_MA0870.1	1	1	-	3.447577766856361	-0.6507128885367793	GACACAGACAGTGCT
chr1	24443268	24443269	chr1:24443269:T:C	rs6697537	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	24443326	24443327	chr1:24443327:A:G	rs992121246	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	24601235	24601236	chr1:24601236:C:T	rs55691364	C	T	c	Sox1_MA0870.1	29	0	-	0	0	.
chr1	24601239	24601240	chr1:24601240:G:A	rs56316061	G	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr1	24874321	24874322	chr1:24874322:T:G	rs3131523	T	G	T	Sox1_MA0870.1	21	0	+	0	0	.
chr1	24911494	24911495	chr1:24911495:C:T	rs1984520	C	T	C	Sox1_MA0870.1	12	1	-	5.9621897054662405	-0.9465650738489796	CACAAAGACAGTGTG
chr1	25074320	25074321	chr1:25074321:T:C	rs16830335	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr1	25148419	25148420	chr1:25148420:C:T	rs143646285	C	T	c	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	25461930	25461931	chr1:25461931:A:G	rs35189848	A	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	25461933	25461934	chr1:25461934:C:A	rs35346083	C	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	25523730	25523731	chr1:25523731:C:T	rs113280261	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	25568213	25568214	chr1:25568214:T:C	rs76969561	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr1	25647028	25647029	chr1:25647029:A:G	rs74062322	A	G	A	Sox1_MA0870.1	4	1	+	8.670332599892802	1.8927543457226133	CTCAATAGCAGTGTA
chr1	25700147	25700148	chr1:25700148:T:C	rs1240421514	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr1	25895931	25895932	chr1:25895932:G:A	rs115760190	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr1	26077499	26077500	chr1:26077500:C:T	rs3008233	C	T	T	Sox1_MA0870.1	20	0	+	0	0	.
chr1	26198028	26198029	chr1:26198029:G:A	rs61776651	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	26235539	26235540	chr1:26235540:A:G	rs4329500	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	26701400	26701401	chr1:26701401:T:C	chr1:26701401:T:C	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	26701424	26701425	chr1:26701425:G:T	rs57217461	G	T	G	Sox1_MA0870.1	9	1	+	6.648116998544419	6.648116998544419	CACACTTACGTTGTT
chr1	26753439	26753440	chr1:26753440:T:C	rs12742115	T	C	T	Sox1_MA0870.1	10	1	+	4.20974883452876	-2.5989482496075738	CAAAATAACATTGGG
chr1	27145492	27145493	chr1:27145493:C:T	rs77068629	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr1	27392033	27392034	chr1:27392034:C:T	rs144148674	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr1	27427545	27427546	chr1:27427546:C:T	rs2236034	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr1	27427565	27427566	chr1:27427566:T:C	rs2504771	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	27520003	27520004	chr1:27520004:C:T	rs543336925	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr1	27520043	27520044	chr1:27520044:C:T	rs140284406	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	27626236	27626237	chr1:27626237:A:G	rs79478829	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr1	27663355	27663356	chr1:27663356:A:G	rs114829468	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr1	27774209	27774210	chr1:27774210:T:C	rs2235191	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr1	27912818	27912819	chr1:27912819:A:G	rs139775840	A	G	A	Sox1_MA0870.1	7	1	+	6.138358630958071	5.741380303161562	CACAATGACATTTTA
chr1	27935158	27935159	chr1:27935159:G:A	rs189568411	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr1	28196830	28196831	chr1:28196831:A:G	rs115514213	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	28236164	28236165	chr1:28236165:A:G	rs12154	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr1	28395412	28395413	chr1:28395413:G:T	rs4908421	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr1	28395418	28395419	chr1:28395419:T:C	rs193057327	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr1	28580913	28580914	chr1:28580914:C:G	rs376671492	C	G	C	Sox1_MA0870.1	12	1	-	5.702955548845998	-1.2057992304692218	TACAGTTCCATTGTA
chr1	29133697	29133698	chr1:29133698:A:G	rs78649597	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr1	29134753	29134754	chr1:29134754:C:T	rs492313	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	29186138	29186139	chr1:29186139:C:G	rs500421	C	G	C	Sox1_MA0870.1	7	1	-	3.9166974566116846	3.8839149568721503	GCCACTTGCATTGGG
chr1	29298862	29298863	chr1:29298863:G:A	rs9426315	G	A	A	Sox1_MA0870.1	7	1	-	9.896043216392986	9.884214163844613	GGCACTACCATTGTT
chr1	29574519	29574520	chr1:29574520:T:C	rs28538401	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr1	29848720	29848721	chr1:29848721:C:A	rs34527566	C	A	C	Sox1_MA0870.1	12	1	-	3.6929553831034525	-3.215799396211768	AACCCAGCCATTGTT
chr1	29880981	29880982	chr1:29880982:C:G	rs10458371	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	29920122	29920123	chr1:29920123:C:T	rs12401689	C	T	C	Sox1_MA0870.1	7	1	-	5.103570149647573	5.50054847744408	AACACAAGCATTGAA
chr1	29996636	29996637	chr1:29996637:A:G	rs267693	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	30015164	30015165	chr1:30015165:A:G	rs428294	A	G	G	Sox1_MA0870.1	1	1	+	8.287071769769476	4.188781114376334	AACACTGGCATTGGA
chr1	30147832	30147833	chr1:30147833:G:A	rs11584273	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	30268684	30268685	chr1:30268685:T:C	rs730839	T	C	T	Sox1_MA0870.1	11	1	+	3.6599487186445163	-1.2954462671658176	CACACCAACAGTGTG
chr1	30316359	30316360	chr1:30316360:G:A	rs117312	G	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	30338744	30338745	chr1:30338745:G:A	rs62641221	G	A	.	Sox1_MA0870.1	26	0	-	0	0	.
chr1	30695919	30695920	chr1:30695920:C:T	rs12119696	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	30749143	30749144	chr1:30749144:A:T	rs3790496	A	T	A	Sox1_MA0870.1	25	0	+	0	0	.
chr1	30755798	30755799	chr1:30755799:G:A	rs56126824	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr1	30780934	30780935	chr1:30780935:G:A	rs76907994	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr1	30809929	30809930	chr1:30809930:G:A	rs187977869	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	30964887	30964888	chr1:30964888:A:C	rs1283484349	A	C	A	Sox1_MA0870.1	3	1	+	6.44546186523735	1.359696940199175	GCCACTGCCAGTGTT
chr1	31203359	31203360	chr1:31203360:C:T	rs61778328	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr1	31329676	31329677	chr1:31329677:G:A	rs12027502	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	31364835	31364836	chr1:31364836:C:A	rs41263944	C	A	C	Sox1_MA0870.1	8	1	+	5.267012610370712	-0.6261570439475014	GCCAAGATCATTGTT
chr1	31532563	31532564	chr1:31532564:G:A	rs114625793	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	31553852	31553853	chr1:31553853:C:T	rs10753254	C	T	c	Sox1_MA0870.1	25	0	+	0	0	.
chr1	31564045	31564046	chr1:31564046:C:T	rs76841334	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr1	31822824	31822825	chr1:31822825:A:G	rs11807742	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	31849852	31849853	chr1:31849853:C:T	rs7521199	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	32989884	32989885	chr1:32989885:T:C	rs11581686	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr1	33007322	33007323	chr1:33007323:T:C	rs1534892	T	C	T	Sox1_MA0870.1	4	1	-	3.4575895673359325	-3.319988686834256	ATCCATGGCAGTGTG
chr1	33007340	33007341	chr1:33007341:A:G	rs1534893	A	G	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	33032181	33032182	chr1:33032182:C:T	rs78143469	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr1	33099397	33099398	chr1:33099398:G:A	chr1:33099398:G:A	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	33099447	33099448	chr1:33099448:C:T	rs139284975	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr1	33396677	33396678	chr1:33396678:C:T	rs1016905	C	T	C	Sox1_MA0870.1	1	1	-	5.198693390403037	9.29698404579618	AGCACTTAGATTGTG
chr1	33396692	33396693	chr1:33396693:G:A	rs6699152	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	33460365	33460366	chr1:33460366:C:T	rs10914729	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	33682399	33682400	chr1:33682400:A:G	rs12410647	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr1	33783728	33783729	chr1:33783729:T:C	rs717030	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	33828223	33828224	chr1:33828224:C:T	rs1570090	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr1	33852887	33852888	chr1:33852888:A:C	chr1:33852888:A:C	A	C	A	Sox1_MA0870.1	18	0	-	0	0	.
chr1	33852922	33852923	chr1:33852923:T:C	rs1407121	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	33949435	33949436	chr1:33949436:G:T	rs571225	G	T	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	33949436	33949437	chr1:33949437:C:A	rs571226	C	A	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	34037933	34037934	chr1:34037934:T:C	rs67013011	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr1	34190701	34190702	chr1:34190702:G:A	rs899380	G	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr1	34396247	34396248	chr1:34396248:C:T	rs77197415	C	T	C	Sox1_MA0870.1	10	1	+	5.331015733963287	12.139712818099621	AACAATACCACTGGC
chr1	34396261	34396262	chr1:34396262:T:C	rs72896108	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr1	34692105	34692106	chr1:34692106:T:C	rs76893325	T	C	T	Sox1_MA0870.1	9	1	-	10.028709936607664	3.119955157292442	ACCACTGCCATTGTT
chr1	34837908	34837909	chr1:34837909:T:C	rs6695826	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	34840025	34840026	chr1:34840026:C:T	rs12127790	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr1	34840026	34840027	chr1:34840027:G:A	rs4320750	G	A	A	Sox1_MA0870.1	26	0	-	0	0	.
chr1	34852205	34852206	chr1:34852206:G:C	chr1:34852206:G:C	G	C	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	34852211	34852212	chr1:34852212:C:G	chr1:34852212:C:G	C	G	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	35774865	35774866	chr1:35774866:A:T	rs375598995	A	T	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	36168462	36168463	chr1:36168463:A:C	rs74066060	A	C	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	36227872	36227873	chr1:36227873:C:T	rs795048	C	T	T	Sox1_MA0870.1	17	0	-	0	0	.
chr1	36351038	36351039	chr1:36351039:G:A	rs78114705	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	36524556	36524557	chr1:36524557:T:G	rs4576633	T	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr1	36556122	36556123	chr1:36556123:A:G	rs60730554	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	37038292	37038293	chr1:37038293:C:G	rs374371027	C	G	C	Sox1_MA0870.1	20	0	-	0	0	.
chr1	37038299	37038300	chr1:37038300:A:G	rs528275016	A	G	A	Sox1_MA0870.1	13	1	-	3.7880836451176005	1.6104283476666068	CTCACTGCGATTGTG
chr1	37513171	37513172	chr1:37513172:T:C	rs4653296	T	C	T	Sox1_MA0870.1	4	1	-	6.5776102391548	-0.19996801501538686	TACAATAGCATTCTA
chr1	38022979	38022980	chr1:38022980:T:C	rs57925146	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr1	38059360	38059361	chr1:38059361:A:G	rs6676868	A	G	G	Sox1_MA0870.1	33	0	-	0	0	.
chr1	38172785	38172786	chr1:38172786:T:C	rs149180994	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr1	38306670	38306671	chr1:38306671:A:G	rs11210514	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr1	38452137	38452138	chr1:38452138:T:G	rs882000	T	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr1	38483870	38483871	chr1:38483871:C:T	rs72669246	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr1	38677383	38677384	chr1:38677384:T:C	rs11585248	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	38742071	38742072	chr1:38742072:C:T	rs644959	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr1	38874609	38874610	chr1:38874610:C:T	rs880303	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr1	39092099	39092100	chr1:39092100:T:C	rs260964	T	C	c	Sox1_MA0870.1	3	1	-	6.238217885278292	-0.662371781918934	AATACTATCATTGCT
chr1	39782446	39782447	chr1:39782447:G:A	rs74879559	G	A	g	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	39814236	39814237	chr1:39814237:T:G	rs75889236	T	G	t	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	39972065	39972066	chr1:39972066:C:A	rs11207225	C	A	C	Sox1_MA0870.1	17	0	+	0	0	.
chr1	40004521	40004522	chr1:40004522:G:A	rs34339529	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	40015017	40015018	chr1:40015018:G:A	rs34041780	G	A	A	Sox1_MA0870.1	3	1	+	3.0297770866331124	9.930366753830338	CACGATTCCATTGGC
chr1	40400615	40400616	chr1:40400616:C:T	rs2982508	C	T	C	Sox1_MA0870.1	12	1	-	4.053834676135383	-2.8549201031798375	ATCCATTCCATTGCG
chr1	40539532	40539533	chr1:40539533:C:A	rs6700711	C	A	A	Sox1_MA0870.1	30	0	-	0	0	.
chr1	40564791	40564792	chr1:40564792:A:G	rs17403513	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	40567998	40567999	chr1:40567999:T:C	rs7515986	T	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	40754723	40754724	chr1:40754724:G:A	rs2885328	G	A	A	Sox1_MA0870.1	32	0	+	0	0	.
chr1	40764114	40764115	chr1:40764115:C:G	rs3767953	C	G	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	41293826	41293827	chr1:41293827:C:A	rs60552457	C	A	C	Sox1_MA0870.1	24	0	+	0	0	.
chr1	41369262	41369263	chr1:41369263:C:T	rs61229336	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	41500861	41500862	chr1:41500862:T:G	rs2810585	T	G	T	Sox1_MA0870.1	4	1	-	4.7286011460175255	2.7717882113923102	GACAATTAGATTCTT
chr1	41544613	41544614	chr1:41544614:G:A	rs11210423	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	41544618	41544619	chr1:41544619:C:G	rs368793922	C	G	C	Sox1_MA0870.1	2	1	+	4.422437293938679	-2.486317485376541	ACCACTATCATCGCT
chr1	41572203	41572204	chr1:41572204:T:C	rs4509569	T	C	T	Sox1_MA0870.1	13	1	+	5.244721355701458	3.0670660582504627	ATCAAAACCAGTGTC
chr1	41613952	41613953	chr1:41613953:G:A	rs117047842	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	41632232	41632233	chr1:41632233:C:T	rs6703597	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr1	41687663	41687664	chr1:41687664:G:A	rs7518983	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	41871576	41871577	chr1:41871577:T:G	rs710229	T	G	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	41914134	41914135	chr1:41914135:T:A	rs72965235	T	A	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	41917656	41917657	chr1:41917657:G:A	rs74070303	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr1	42571028	42571029	chr1:42571029:C:T	rs2762699	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	42706150	42706151	chr1:42706151:T:C	rs6663618	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	42951478	42951479	chr1:42951479:T:G	rs4660691	T	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	43134614	43134615	chr1:43134615:T:C	rs116479204	T	C	T	Sox1_MA0870.1	6	1	-	3.6406605285469764	2.1020538354062577	CACAGTAGGATTGTA
chr1	43209795	43209796	chr1:43209796:G:A	rs2453412	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr1	43271270	43271271	chr1:43271271:C:T	rs79825075	C	T	c	Sox1_MA0870.1	20	0	-	0	0	.
chr1	43278224	43278225	chr1:43278225:G:A	rs4660724	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr1	43513633	43513634	chr1:43513634:C:T	chr1:43513634:C:T	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr1	43542989	43542990	chr1:43542990:G:T	rs113024100	G	T	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	43573632	43573633	chr1:43573633:A:G	rs10890258	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr1	43585075	43585076	chr1:43585076:T:G	rs10789437	T	G	G	Sox1_MA0870.1	2	1	+	4.983203936174014	4.983203936174014	TATACTGGCATTGTT
chr1	44033569	44033570	chr1:44033570:A:G	rs1978195	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	44458778	44458779	chr1:44458779:G:A	rs12057674	G	A	A	Sox1_MA0870.1	10	1	+	5.236171414286812	0.6685992587140386	AACAATCACAGTGAC
chr1	44514542	44514543	chr1:44514543:A:G	rs17386059	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr1	44640650	44640651	chr1:44640651:T:C	rs183804344	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	44719588	44719589	chr1:44719589:A:G	rs12746898	A	G	A	Sox1_MA0870.1	14	1	-	5.0703471561401265	3.5593377516587217	AAAACTATCATTGAT
chr1	44775233	44775234	chr1:44775234:C:G	rs114577765	C	G	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	45093528	45093529	chr1:45093529:G:A	rs61788388	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr1	45537454	45537455	chr1:45537455:T:A	rs2934861	T	A	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	45609069	45609070	chr1:45609070:T:G	chr1:45609070:T:G	T	G	T	Sox1_MA0870.1	34	0	-	0	0	.
chr1	45973114	45973115	chr1:45973115:C:A	rs11211234	C	A	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	46396234	46396235	chr1:46396235:A:G	rs2145408	A	G	G	Sox1_MA0870.1	10	1	-	4.86078248045884	-1.9479146036774924	GACAATACTGTTGTT
chr1	46688182	46688183	chr1:46688183:T:A	rs11211340	T	A	T	Sox1_MA0870.1	15	0	-	0	0	.
chr1	46690048	46690049	chr1:46690049:T:C	rs3766221	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr1	46690060	46690061	chr1:46690061:A:G	rs3766220	A	G	A	Sox1_MA0870.1	11	1	-	7.864717594995682	2.909322609185348	AACAATGACACTGTC
chr1	46735941	46735942	chr1:46735942:C:G	rs2897106	C	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	46817832	46817833	chr1:46817833:G:T	rs4646495	G	T	t	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	47211439	47211440	chr1:47211440:C:T	rs1419051	C	T	C	Sox1_MA0870.1	1	1	-	3.978106592425269	8.07639724781841	AGCACTTGCAGTGCA
chr1	47408011	47408012	chr1:47408012:C:T	rs2405922	C	T	C	Sox1_MA0870.1	2	1	+	6.296657122239036	-0.6120976570761837	ACCAAAAGCAGTGTT
chr1	47481810	47481811	chr1:47481811:T:G	rs12145431	T	G	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	47555036	47555037	chr1:47555037:T:C	rs935574459	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	47555541	47555542	chr1:47555542:C:T	rs978248	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	47575902	47575903	chr1:47575903:G:A	rs113326729	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr1	47575933	47575934	chr1:47575934:T:G	rs2457050	T	G	G	Sox1_MA0870.1	3	1	-	6.763361384224875	1.677596459186701	AACAAAAGCATTGGA
chr1	48071125	48071126	chr1:48071126:A:G	rs584425	A	G	A	Sox1_MA0870.1	13	1	-	7.673955313922098	5.496300016471104	AATAATTTCATTGTG
chr1	48195484	48195485	chr1:48195485:T:C	rs573893	T	C	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	48208018	48208019	chr1:48208019:A:G	rs535295	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	48402446	48402447	chr1:48402447:A:G	rs112644553	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	48695394	48695395	chr1:48695395:C:T	rs75111792	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr1	49102797	49102798	chr1:49102798:T:C	rs478808	T	C	T	Sox1_MA0870.1	10	1	+	3.9942036467336073	-2.814493437402726	TACATTTGCATTGGT
chr1	49306779	49306780	chr1:49306780:A:T	rs241473	A	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr1	50175983	50175984	chr1:50175984:G:A	rs78331461	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr1	51061555	51061556	chr1:51061556:C:G	rs78695940	C	G	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	51512692	51512693	chr1:51512693:A:G	rs74082612	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr1	51534658	51534659	chr1:51534659:C:T	rs56280508	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	51790456	51790457	chr1:51790457:G:A	rs41293247	G	A	G	Sox1_MA0870.1	2	1	-	5.5040953194115705	-1.40465945990365	CACACCAGCATTGTG
chr1	51883409	51883410	chr1:51883410:G:A	rs61780662	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	52056683	52056684	chr1:52056684:C:T	rs2783190	C	T	C	Sox1_MA0870.1	0	1	+	6.945465413191329	6.243088656043849	CACAACAGCAGTGTT
chr1	52056689	52056690	chr1:52056690:A:G	rs114577316	A	G	A	Sox1_MA0870.1	6	1	+	6.945465413191329	5.406858720050611	CACAACAGCAGTGTT
chr1	52112069	52112070	chr1:52112070:T:G	rs72909945	T	G	t	Sox1_MA0870.1	1	1	-	9.652321701405713	5.883181316561213	AACAATTACAGTGAC
chr1	52286854	52286855	chr1:52286855:A:G	rs35354820	A	G	A	Sox1_MA0870.1	9	1	+	4.317342846223229	-2.5914119330919907	CATACTTCCATTGTA
chr1	52701478	52701479	chr1:52701479:A:C	rs269289	A	C	C	Sox1_MA0870.1	6	1	+	5.123467558691491	-0.2657314441417109	TATAATAACAGTGTC
chr1	52748209	52748210	chr1:52748210:C:T	rs9988469	C	T	c	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	52748211	52748212	chr1:52748212:T:C	rs9988539	T	C	c	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	52921979	52921980	chr1:52921980:G:A	rs181961067	G	A	g	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	53183843	53183844	chr1:53183844:A:G	rs6668221	A	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	53326978	53326979	chr1:53326979:A:C	rs3820198	A	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	53350552	53350553	chr1:53350553:T:A	rs567465986	T	A	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	53384691	53384692	chr1:53384692:C:T	rs78122858	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	53389550	53389551	chr1:53389551:A:C	rs1766635	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	53475334	53475335	chr1:53475335:A:G	rs1288643	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	53480811	53480812	chr1:53480812:A:G	rs1288622	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	53599643	53599644	chr1:53599644:G:A	rs77290968	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr1	53602342	53602343	chr1:53602343:C:T	rs4927012	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	53655784	53655785	chr1:53655785:C:T	rs4927023	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr1	53755042	53755043	chr1:53755043:G:T	rs115509218	G	T	G	Sox1_MA0870.1	2	1	-	5.06346725411192	-1.845287525203299	CCCAATTACATCGTG
chr1	54263184	54263185	chr1:54263185:C:T	rs643428	C	T	T	Sox1_MA0870.1	4	1	+	4.069111798341224	-0.7516535212037477	CACACTGACAGCGTG
chr1	54263190	54263191	chr1:54263191:G:C	rs630602	G	C	C	Sox1_MA0870.1	10	1	+	4.069111798341224	-0.4984603572315488	CACACTGACAGCGTG
chr1	54299264	54299265	chr1:54299265:C:T	rs576750542	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	54421623	54421624	chr1:54421624:G:A	rs4927104	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	54611960	54611961	chr1:54611961:G:A	rs72641105	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	54847681	54847682	chr1:54847682:A:G	rs594365	A	G	A	Sox1_MA0870.1	4	1	+	6.613588459473911	-0.1639897946962785	AACTATATCATTGGC
chr1	54850267	54850268	chr1:54850268:G:T	rs11555500	G	T	G	Sox1_MA0870.1	7	1	+	8.978748671680579	8.934137119392672	AACAATGGCACTGTT
chr1	54880032	54880033	chr1:54880033:C:A	rs12042996	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	54926794	54926795	chr1:54926795:T:C	rs67281988	T	C	C	Sox1_MA0870.1	13	1	+	11.896836996667012	9.71918169921602	AACACTGCCATTGTA
chr1	55172401	55172402	chr1:55172402:G:A	rs1165222	G	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr1	55189143	55189144	chr1:55189144:T:C	rs75595726	T	C	T	Sox1_MA0870.1	10	1	+	6.065940427599417	-0.7427566565369169	AACAATTCCATTCAT
chr1	55211370	55211371	chr1:55211371:T:C	rs1874773	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr1	55334096	55334097	chr1:55334097:C:T	rs207164	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr1	55446510	55446511	chr1:55446511:C:T	rs1986518	C	T	T	Sox1_MA0870.1	32	0	-	0	0	.
chr1	55503742	55503743	chr1:55503743:G:T	rs11206612	G	T	g	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	55503755	55503756	chr1:55503756:T:C	rs61774703	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	55548733	55548734	chr1:55548734:T:C	rs72667842	T	C	T	Sox1_MA0870.1	10	1	+	8.483501845117729	1.6748047609813943	AAAAATACCATTGTA
chr1	55633309	55633310	chr1:55633310:T:C	rs72912611	T	C	T	Sox1_MA0870.1	3	1	-	5.272180341721656	-1.6284093254755696	GACAAAAGTATTGTC
chr1	55773342	55773343	chr1:55773343:A:T	rs12095642	A	T	A	Sox1_MA0870.1	29	0	+	0	0	.
chr1	56284693	56284694	chr1:56284694:C:T	rs12118755	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr1	56304700	56304701	chr1:56304701:C:A	rs11206781	C	A	C	Sox1_MA0870.1	30	0	-	0	0	.
chr1	56309173	56309174	chr1:56309174:A:G	rs12731002	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	56338586	56338587	chr1:56338587:T:C	chr1:56338587:T:C	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr1	56338630	56338631	chr1:56338631:A:C	rs72660491	A	C	C	Sox1_MA0870.1	27	0	+	0	0	.
chr1	56421961	56421962	chr1:56421962:A:G	rs11206804	A	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr1	56601748	56601749	chr1:56601749:G:C	rs2051038	G	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr1	56678312	56678313	chr1:56678313:A:G	rs2796498	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	56954369	56954370	chr1:56954370:T:C	rs706483	T	C	T	Sox1_MA0870.1	9	1	-	3.5262190236886886	-3.3825357556265314	AACACCTGCAGTGTG
chr1	57024659	57024660	chr1:57024660:T:C	rs706361	T	C	C	Sox1_MA0870.1	11	1	+	4.3481110295787	-0.6072839562316338	AACACAGTCAGTGCT
chr1	57041488	57041489	chr1:57041489:G:A	rs11206958	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr1	57192504	57192505	chr1:57192505:A:G	rs12080233	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr1	57192530	57192531	chr1:57192531:G:A	rs197106	G	A	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	57367624	57367625	chr1:57367625:C:T	rs77406820	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	57370815	57370816	chr1:57370816:T:C	rs7540817	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	57451088	57451089	chr1:57451089:A:C	rs17115795	A	C	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	57536818	57536819	chr1:57536819:C:T	rs2691441	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr1	57719444	57719445	chr1:57719445:G:A	rs68107934	G	A	A	Sox1_MA0870.1	10	1	-	5.401535698226127	12.21023278236246	AACAATATCACTGAG
chr1	57761522	57761523	chr1:57761523:C:T	rs3131741	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr1	58311898	58311899	chr1:58311899:T:A	rs61781884	T	A	T	Sox1_MA0870.1	31	0	+	0	0	.
chr1	58388036	58388037	chr1:58388037:C:G	rs6692286	C	G	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	58574008	58574009	chr1:58574009:T:C	rs78279871	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr1	58575547	58575548	chr1:58575548:C:T	rs7333	C	T	T	Sox1_MA0870.1	14	1	+	6.117618452143187	7.6286278566245915	ACCAATATCAGTGGC
chr1	58652983	58652984	chr1:58652984:T:G	rs232874	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	58855479	58855480	chr1:58855480:C:A	rs116728140	C	A	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	58883897	58883898	chr1:58883898:C:T	rs12239208	C	T	C	Sox1_MA0870.1	12	1	-	10.768315742506378	3.8595609631911576	AACAAAGGCATTGTT
chr1	59126583	59126584	chr1:59126584:G:A	rs632986	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr1	59295833	59295834	chr1:59295834:A:C	rs989127345	A	C	A	Sox1_MA0870.1	0	1	-	4.447740683651578	5.0442916465472845	TGCACTAAGATTGTC
chr1	59434381	59434382	chr1:59434382:G:C	rs564150450	G	C	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	59491246	59491247	chr1:59491247:A:G	rs834672	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr1	59689817	59689818	chr1:59689818:G:A	rs72666283	G	A	G	Sox1_MA0870.1	13	1	-	9.493187190446305	11.6708424878973	CTCAATGACATTGCT
chr1	59689847	59689848	chr1:59689848:A:G	rs11580721	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	59764830	59764831	chr1:59764831:G:A	rs4350232	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr1	59880042	59880043	chr1:59880043:G:T	rs60517053	G	T	G	Sox1_MA0870.1	4	1	-	3.653338609482744	5.6101515441079615	TACACCTGCATTGTA
chr1	59917492	59917493	chr1:59917493:G:A	rs916735400	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	59995242	59995243	chr1:59995243:T:A	rs641467	T	A	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	60133164	60133165	chr1:60133165:G:A	rs12091672	G	A	G	Sox1_MA0870.1	2	1	-	3.7601435517239827	-3.1486112275912372	AACCATGCCATTTTT
chr1	60562912	60562913	chr1:60562913:A:G	rs72675217	A	G	A	Sox1_MA0870.1	13	1	-	3.7002392802299093	1.5225839827789154	GCCACAGGCATTGTT
chr1	60575961	60575962	chr1:60575962:C:T	rs72675228	C	T	C	Sox1_MA0870.1	13	1	+	3.4335163351512783	5.611171632602272	CACAATAACTGTGCG
chr1	60792467	60792468	chr1:60792468:G:A	rs113767220	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	61132573	61132574	chr1:61132574:T:G	chr1:61132574:T:G	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	61253618	61253619	chr1:61253619:G:A	chr1:61253619:G:A	G	A	G	Sox1_MA0870.1	8	1	-	5.201699538451425	1.0200899918141428	AACACTTTCAGTCTT
chr1	61259865	61259866	chr1:61259866:G:C	rs332836	G	C	C	Sox1_MA0870.1	6	1	+	3.8267784634516238	-0.023813846240858916	AATAAAGCCATTGTT
chr1	61338478	61338479	chr1:61338479:A:T	rs58641518	A	T	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	61477620	61477621	chr1:61477621:G:A	rs12119273	G	A	g	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	61477632	61477633	chr1:61477633:G:A	rs75713973	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	61637356	61637357	chr1:61637357:G:A	rs10889245	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	61664746	61664747	chr1:61664747:A:G	rs7547153	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	61741581	61741582	chr1:61741582:A:G	rs7551399	A	G	G	Sox1_MA0870.1	0	1	+	6.8154225981962355	5.473299455389482	ATCAATCACAGTGTT
chr1	61776393	61776394	chr1:61776394:A:C	rs1286837	A	C	A	Sox1_MA0870.1	1	1	+	3.37363368282434	-0.3955067020201586	AACAAAGGCAGTGGC
chr1	62034000	62034001	chr1:62034001:G:A	rs11585888	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr1	62069181	62069182	chr1:62069182:G:T	rs6661862	G	T	G	Sox1_MA0870.1	30	0	+	0	0	.
chr1	62250488	62250489	chr1:62250489:A:C	rs4322258	A	C	A	Sox1_MA0870.1	3	1	+	3.866445652708509	-1.2193192723296657	TACACTCCCAGTGTA
chr1	62272504	62272505	chr1:62272505:G:A	rs80134460	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr1	62272531	62272532	chr1:62272532:C:T	rs55812433	C	T	C	Sox1_MA0870.1	7	1	-	3.336161795638917	3.7331401234354242	CTCATTTGCATTGTG
chr1	62453192	62453193	chr1:62453193:A:G	rs630144	A	G	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	62690371	62690372	chr1:62690372:A:G	rs1168114	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	62785123	62785124	chr1:62785124:C:T	rs148318261	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr1	63012042	63012043	chr1:63012043:G:C	rs6588003	G	C	g	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	63129024	63129025	chr1:63129025:T:C	rs66538437	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr1	63264322	63264323	chr1:63264323:G:T	chr1:63264323:G:T	G	T	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	63675623	63675624	chr1:63675624:C:T	rs1740400	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	64077864	64077865	chr1:64077865:A:G	rs1260763	A	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr1	64120639	64120640	chr1:64120640:T:C	rs2762850	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	64120659	64120660	chr1:64120660:T:C	rs12129247	T	C	C	Sox1_MA0870.1	5	1	+	4.900080049444438	-2.003084709203323	AACAATGGCACTGCA
chr1	64196740	64196741	chr1:64196741:A:G	rs12731793	A	G	A	Sox1_MA0870.1	9	1	+	11.66792718673578	4.759172407420559	AGCACTAACATTGTT
chr1	64288941	64288942	chr1:64288942:T:C	rs1329784	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr1	64309610	64309611	chr1:64309611:A:G	rs150890531	A	G	A	Sox1_MA0870.1	3	1	+	6.67152024963352	-0.22906941756370525	CACACTGACAGTGCA
chr1	64474808	64474809	chr1:64474809:C:A	rs12142480	C	A	C	Sox1_MA0870.1	14	1	-	3.9598986056033905	5.685580693321494	CACACTGGCCTTGTG
chr1	64687255	64687256	chr1:64687256:A:G	rs75681619	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr1	64687257	64687258	chr1:64687258:C:T	rs2375523	C	T	T	Sox1_MA0870.1	31	0	-	0	0	.
chr1	64697150	64697151	chr1:64697151:T:C	rs12046636	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr1	64746511	64746512	chr1:64746512:T:C	chr1:64746512:T:C	T	C	t	Sox1_MA0870.1	5	1	+	4.029479281343603	-2.8736854773041576	GACAATTGCATGGCA
chr1	64911476	64911477	chr1:64911477:G:A	rs61784740	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	64923543	64923544	chr1:64923544:A:G	rs17397674	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr1	65151591	65151592	chr1:65151592:C:G	rs12404018	C	G	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	65394976	65394977	chr1:65394977:T:C	rs12077111	T	C	t	Sox1_MA0870.1	11	1	+	4.92549805955349	-0.02989692625684337	AACACATCCAGTGCT
chr1	65483256	65483257	chr1:65483257:C:A	rs12402567	C	A	c	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	65818052	65818053	chr1:65818053:C:T	rs4259616	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	65847113	65847114	chr1:65847114:A:G	rs4133072	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr1	65975645	65975646	chr1:65975646:G:A	rs1937436	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	66181060	66181061	chr1:66181061:C:T	rs147257739	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	66181096	66181097	chr1:66181097:C:A	rs782329	C	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr1	66183219	66183220	chr1:66183220:C:T	rs524897	C	T	C	Sox1_MA0870.1	8	1	+	5.661428247458595	1.479818700821312	TAGAATTACAGTGTT
chr1	66211789	66211790	chr1:66211790:A:G	rs12048931	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	66211797	66211798	chr1:66211798:A:G	rs17423605	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	66371597	66371598	chr1:66371598:C:T	rs150971744	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	66462448	66462449	chr1:66462449:G:A	rs1067001	G	A	G	Sox1_MA0870.1	4	1	-	5.580159708656964	0.7593943891119905	GACACCACCATTGTC
chr1	66564026	66564027	chr1:66564027:T:C	rs17129098	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	66575625	66575626	chr1:66575626:T:C	rs6699200	T	C	C	Sox1_MA0870.1	17	0	-	0	0	.
chr1	66596174	66596175	chr1:66596175:A:G	chr1:66596175:A:G	A	G	A	Sox1_MA0870.1	10	1	-	4.467897088646588	-2.3407999954897454	AGCTATAACATTGGT
chr1	66747889	66747890	chr1:66747890:T:G	rs628655	T	G	T	Sox1_MA0870.1	20	0	-	0	0	.
chr1	67001489	67001490	chr1:67001490:C:G	rs76609130	C	G	C	Sox1_MA0870.1	2	1	+	5.033048179324193	-1.8757065999910265	CTCACTTACATTGAA
chr1	67282078	67282079	chr1:67282079:A:G	rs11209035	A	G	G	Sox1_MA0870.1	14	1	-	11.638333852923923	10.127324448442518	TACAATGCCATTGCT
chr1	67370990	67370991	chr1:67370991:G:A	rs72678546	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	67393684	67393685	chr1:67393685:C:T	rs746151263	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr1	67462017	67462018	chr1:67462018:G:A	rs12136231	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr1	67462026	67462027	chr1:67462027:A:G	rs10458560	A	G	A	Sox1_MA0870.1	14	1	-	10.674819620109822	9.163810215628418	GACAATGGGATTGTT
chr1	67466287	67466288	chr1:67466288:C:A	rs75645855	C	A	C	Sox1_MA0870.1	14	1	+	6.973200680468446	6.583196760164703	AGCAATTGGATTGTC
chr1	67478305	67478306	chr1:67478306:G:T	rs10889691	G	T	G	Sox1_MA0870.1	7	1	+	5.410497328187091	5.365885775899185	CACAATAGGTTTGTT
chr1	67578702	67578703	chr1:67578703:G:A	rs787530	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr1	67588275	67588276	chr1:67588276:A:G	rs2050839	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr1	67588281	67588282	chr1:67588282:G:A	rs787514	G	A	A	Sox1_MA0870.1	17	0	-	0	0	.
chr1	67690693	67690694	chr1:67690694:C:A	rs76477672	C	A	C	Sox1_MA0870.1	34	0	+	0	0	.
chr1	67897896	67897897	chr1:67897897:A:G	rs1317272	A	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr1	67957617	67957618	chr1:67957618:G:A	rs1033914604	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	68118547	68118548	chr1:68118548:T:C	rs76999445	T	C	C	Sox1_MA0870.1	0	1	-	5.235896702127089	3.8937735593203353	ATCCCTATCATTGTG
chr1	68176289	68176290	chr1:68176290:T:C	rs890780099	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	68377422	68377423	chr1:68377423:G:C	rs74551812	G	C	G	Sox1_MA0870.1	27	0	+	0	0	.
chr1	69939552	69939553	chr1:69939553:G:A	rs2025896	G	A	G	Sox1_MA0870.1	4	1	-	3.927116105863858	-0.8936492136811142	CACACTGCCATTTTG
chr1	70297650	70297651	chr1:70297651:C:G	rs138692440	C	G	C	Sox1_MA0870.1	32	0	+	0	0	.
chr1	70411264	70411265	chr1:70411265:T:C	rs767468686	T	C	T	Sox1_MA0870.1	3	1	-	3.77191996668631	-3.1286697005109136	CACACAGCGATTGTT
chr1	70411275	70411276	chr1:70411276:A:T	rs17131292	A	T	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	70922450	70922451	chr1:70922451:A:G	rs6424412	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	71017485	71017486	chr1:71017486:T:C	rs76019462	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	71634304	71634305	chr1:71634305:C:A	rs34309797	C	A	C	Sox1_MA0870.1	30	0	-	0	0	.
chr1	71719532	71719533	chr1:71719533:G:T	rs11209830	G	T	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	71834795	71834796	chr1:71834796:C:T	chr1:71834796:C:T	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	71834818	71834819	chr1:71834819:C:T	rs517901	C	T	T	Sox1_MA0870.1	8	1	+	6.640499055631285	2.4588895089940017	TACAATAACAGAGTT
chr1	72285868	72285869	chr1:72285869:A:G	rs2613499	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	72433793	72433794	chr1:72433794:C:T	rs12404629	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	72616787	72616788	chr1:72616788:T:C	rs12408420	T	C	T	Sox1_MA0870.1	0	1	+	6.673491245510654	7.375868002658134	TGCAATTGCATTGGT
chr1	73097080	73097081	chr1:73097081:A:G	rs12065149	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr1	73152938	73152939	chr1:73152939:G:C	rs4633240	G	C	G	Sox1_MA0870.1	22	0	+	0	0	.
chr1	73152945	73152946	chr1:73152946:A:G	rs4454488	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr1	73783916	73783917	chr1:73783917:G:C	rs4650232	G	C	G	Sox1_MA0870.1	27	0	+	0	0	.
chr1	73887410	73887411	chr1:73887411:T:C	rs12091914	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	75137944	75137945	chr1:75137945:T:C	rs12036667	T	C	T	Sox1_MA0870.1	6	1	-	5.351679576002608	3.8130728828618903	AACAACAGCATTGAG
chr1	75137948	75137949	chr1:75137949:G:T	rs7535534	G	T	G	Sox1_MA0870.1	2	1	-	5.351679576002608	-1.5570752033126132	AACAACAGCATTGAG
chr1	75237523	75237524	chr1:75237524:G:T	rs616827	G	T	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	75248868	75248869	chr1:75248869:T:C	rs649352	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	75315093	75315094	chr1:75315094:C:T	rs11163095	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	75502092	75502093	chr1:75502093:C:T	rs12401888	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr1	75595306	75595307	chr1:75595307:A:T	rs211681	A	T	T	Sox1_MA0870.1	0	1	+	5.954306519139717	4.015632413437258	ACCCATTCCATTGTC
chr1	75672076	75672077	chr1:75672077:C:G	rs12132503	C	G	c	Sox1_MA0870.1	26	0	-	0	0	.
chr1	75887539	75887540	chr1:75887540:C:T	rs12082448	C	T	c	Sox1_MA0870.1	18	0	-	0	0	.
chr1	75887550	75887551	chr1:75887551:G:A	rs79324496	G	A	g	Sox1_MA0870.1	7	1	-	3.702519186518392	3.6906901339700204	AACACTTCCAGTTTC
chr1	75887562	75887563	chr1:75887563:G:A	rs12127049	G	A	g	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	76086789	76086790	chr1:76086790:A:G	rs1144346	A	G	G	Sox1_MA0870.1	7	1	-	3.8341209747831306	3.845950027331504	CACCATGTCAGTGAT
chr1	76366990	76366991	chr1:76366991:G:T	rs12075208	G	T	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	76388635	76388636	chr1:76388636:T:G	rs10873883	T	G	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr1	76465428	76465429	chr1:76465429:G:A	rs73006167	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	76494874	76494875	chr1:76494875:G:A	rs140307331	G	A	G	Sox1_MA0870.1	7	1	-	6.625417512022285	6.613588459473911	AACTATACCATTGGC
chr1	76845345	76845346	chr1:76845346:T:C	rs115016566	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr1	76939261	76939262	chr1:76939262:C:T	rs894269880	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr1	76939266	76939267	chr1:76939267:G:A	rs117806998	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr1	77032224	77032225	chr1:77032225:C:A	rs7540333	C	A	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	77228954	77228955	chr1:77228955:C:T	rs1779174	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	77265333	77265334	chr1:77265334:C:T	rs115319930	C	T	C	Sox1_MA0870.1	12	1	-	2.8476068295891155	-4.061147949726104	CGCAATAGCAGGGTT
chr1	77548777	77548778	chr1:77548778:A:G	rs76320690	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	78171194	78171195	chr1:78171195:A:T	rs942099	A	T	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	78283721	78283722	chr1:78283722:A:G	rs1953956	A	G	A	Sox1_MA0870.1	5	1	-	6.914387164199066	0.011222405551307602	GGCAATAACATTGGG
chr1	78553770	78553771	chr1:78553771:G:A	rs74446750	G	A	G	Sox1_MA0870.1	2	1	-	3.152788499660149	-3.755966279655071	CACATTTCCATTGGC
chr1	78553785	78553786	chr1:78553786:C:T	rs79200799	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	78737459	78737460	chr1:78737460:T:G	rs2801030	T	G	G	Sox1_MA0870.1	15	0	+	0	0	.
chr1	79240036	79240037	chr1:79240037:A:G	rs228471	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	79425718	79425719	chr1:79425719:A:G	rs3015116	A	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	79575471	79575472	chr1:79575472:G:T	rs115247832	G	T	G	Sox1_MA0870.1	26	0	-	0	0	.
chr1	79746443	79746444	chr1:79746444:C:T	rs114943547	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	79777635	79777636	chr1:79777636:C:T	rs55658731	C	T	c	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	79777636	79777637	chr1:79777637:T:G	rs55800905	T	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	80218974	80218975	chr1:80218975:A:G	rs1539483	A	G	A	Sox1_MA0870.1	4	1	+	5.94765759155882	-0.8299206626113685	AACAAAAGTATTGCT
chr1	80339186	80339187	chr1:80339187:C:T	rs17488710	C	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr1	80992517	80992518	chr1:80992518:G:A	rs11163180	G	A	A	Sox1_MA0870.1	30	0	-	0	0	.
chr1	81314007	81314008	chr1:81314008:G:T	rs17106395	G	T	G	Sox1_MA0870.1	2	1	-	7.507750185626757	0.5989954063115368	TACACTAACAGTGCA
chr1	81314018	81314019	chr1:81314019:G:A	rs6669537	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	81315258	81315259	chr1:81315259:A:G	rs17106399	A	G	A	Sox1_MA0870.1	3	1	+	9.799205739545041	2.8986160723478167	TACAATATCATTGGA
chr1	81352133	81352134	chr1:81352134:C:T	rs67706057	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr1	81408016	81408017	chr1:81408017:T:C	rs4650539	T	C	T	Sox1_MA0870.1	5	1	+	4.163043168591109	-2.7401215900566496	GACAATGAGGTTGTT
chr1	81478513	81478514	chr1:81478514:A:G	rs3924703	A	G	A	Sox1_MA0870.1	3	1	+	7.010152123345164	0.10956245614793758	GGCACTTTCATTGTA
chr1	81547950	81547951	chr1:81547951:T:C	rs1039072173	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	81590333	81590334	chr1:81590334:C:T	rs115586152	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr1	81622231	81622232	chr1:81622232:G:A	rs6691253	G	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	81707187	81707188	chr1:81707188:A:G	rs80209424	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	81719768	81719769	chr1:81719769:A:G	rs78748682	A	G	A	Sox1_MA0870.1	5	1	-	4.293195209430278	-2.6099695492174826	TCCACTAGCATTGGG
chr1	81773119	81773120	chr1:81773120:G:A	rs35895134	G	A	G	Sox1_MA0870.1	7	1	-	4.0330308522848854	4.021201799736512	CACAATTCCAGTTTA
chr1	82111414	82111415	chr1:82111415:T:C	rs2200954	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	82114861	82114862	chr1:82114862:C:G	rs11163432	C	G	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	82162731	82162732	chr1:82162732:C:T	rs776610007	C	T	C	Sox1_MA0870.1	8	1	+	6.187290996307081	2.0056814496697997	AACAAATACATTGGA
chr1	82244438	82244439	chr1:82244439:A:G	rs786381	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr1	82282180	82282181	chr1:82282181:G:C	rs12060840	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	82921900	82921901	chr1:82921901:A:G	rs79135698	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	83087339	83087340	chr1:83087340:A:C	rs12740512	A	C	A	Sox1_MA0870.1	10	1	-	5.219128986236026	2.9780040576724645	AAAAATATCATTGGC
chr1	83706508	83706509	chr1:83706509:A:G	rs12031401	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	83748171	83748172	chr1:83748172:G:A	rs12724410	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr1	83827429	83827430	chr1:83827430:C:T	rs12135529	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	83901942	83901943	chr1:83901943:A:G	rs12133778	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	83997444	83997445	chr1:83997445:G:A	rs558567	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	84124836	84124837	chr1:84124837:T:G	rs185867313	T	G	T	Sox1_MA0870.1	17	0	-	0	0	.
chr1	84124843	84124844	chr1:84124844:A:G	rs2139931	A	G	A	Sox1_MA0870.1	10	1	-	4.7119882322442885	-2.0967088518920445	GAAAATTTCATTGAT
chr1	84171666	84171667	chr1:84171667:A:G	rs61360062	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr1	84225643	84225644	chr1:84225644:A:G	rs11163916	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr1	84520355	84520356	chr1:84520356:C:T	rs925740	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	84768543	84768544	chr1:84768544:T:C	rs4448534	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr1	84889288	84889289	chr1:84889289:G:A	rs12032140	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr1	84889307	84889308	chr1:84889308:T:C	rs12035778	T	C	C	Sox1_MA0870.1	3	1	-	4.821520060210885	-2.0790696069863395	ACCAAAGGCATTGCT
chr1	84973985	84973986	chr1:84973986:T:A	rs486751	T	A	A	Sox1_MA0870.1	24	0	-	0	0	.
chr1	84974020	84974021	chr1:84974021:C:A	rs138103440	C	A	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	85166912	85166913	chr1:85166913:T:G	rs817422	T	G	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	85241155	85241156	chr1:85241156:C:T	rs60156243	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr1	85340038	85340039	chr1:85340039:C:T	rs187690466	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	85343489	85343490	chr1:85343490:A:T	rs3768224	A	T	A	Sox1_MA0870.1	0	1	+	5.353556104043969	3.4148819983415075	AAAAAAATCATTGTT
chr1	85343499	85343500	chr1:85343500:T:C	rs3768223	T	C	T	Sox1_MA0870.1	10	1	+	5.353556104043969	-1.4551409800923643	AAAAAAATCATTGTT
chr1	85397699	85397700	chr1:85397700:G:A	rs3949301	G	A	A	Sox1_MA0870.1	30	0	+	0	0	.
chr1	85818731	85818732	chr1:85818732:T:C	rs566195664	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr1	85864829	85864830	chr1:85864830:T:C	rs7523196	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr1	86139113	86139114	chr1:86139114:A:G	rs115785897	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr1	86313438	86313439	chr1:86313439:T:C	rs1575415	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	86429500	86429501	chr1:86429501:T:C	rs34851039	T	C	T	Sox1_MA0870.1	10	1	+	4.12316628172689	-2.6855308024094424	GGCAAATTCATTGTG
chr1	86527582	86527583	chr1:86527583:C:T	rs145142657	C	T	t	Sox1_MA0870.1	17	0	+	0	0	.
chr1	86757938	86757939	chr1:86757939:T:C	rs17129466	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	87219548	87219549	chr1:87219549:G:A	rs11804752	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr1	87767062	87767063	chr1:87767063:T:G	rs2436988	T	G	T	Sox1_MA0870.1	10	1	+	4.751369402178032	2.5102444736144705	TACAATATCATAGCC
chr1	87792314	87792315	chr1:87792315:G:A	rs6679195	G	A	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	87817023	87817024	chr1:87817024:C:T	rs2436980	C	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	88016545	88016546	chr1:88016546:A:G	rs12759463	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	88371238	88371239	chr1:88371239:G:C	rs10923065	G	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	88477430	88477431	chr1:88477431:C:T	rs4656045	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	88502107	88502108	chr1:88502108:G:C	rs387972	G	C	c	Sox1_MA0870.1	2	1	-	5.020499090567373	-1.888255688747848	GACAAATACATTGGG
chr1	88884340	88884341	chr1:88884341:G:C	rs56035308	G	C	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	88917175	88917176	chr1:88917176:C:T	rs11487619	C	T	C	Sox1_MA0870.1	12	1	-	5.731548067551015	-1.1772067117642062	AGCAAATACATTGTA
chr1	89128991	89128992	chr1:89128992:A:T	rs115705250	A	T	T	Sox1_MA0870.1	10	1	-	7.624611488985201	0.8159144048488671	TTCACTTTCATTGTC
chr1	89165912	89165913	chr1:89165913:C:T	rs590617	C	T	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	89261154	89261155	chr1:89261155:G:A	rs188157736	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	89518865	89518866	chr1:89518866:T:C	rs359931	T	C	T	Sox1_MA0870.1	5	1	+	4.241144589091464	-2.6620201695562957	CACAATTGCAGTTTG
chr1	89524126	89524127	chr1:89524127:T:C	rs1051151384	T	C	T	Sox1_MA0870.1	9	1	-	6.431898327552661	-0.4768564517625613	TCCAATACCATTGGC
chr1	89524129	89524130	chr1:89524130:T:A	rs190484433	T	A	T	Sox1_MA0870.1	6	1	-	6.431898327552661	5.4588496118383585	TCCAATACCATTGGC
chr1	89524151	89524152	chr1:89524152:T:G	chr1:89524152:T:G	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	89636613	89636614	chr1:89636614:C:T	rs6684676	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	89755881	89755882	chr1:89755882:C:T	rs580251	C	T	C	Sox1_MA0870.1	13	1	+	7.18131890347336	9.358974200924354	ACCACTAGCAGTGCT
chr1	89840571	89840572	chr1:89840572:G:A	rs35704457	G	A	G	Sox1_MA0870.1	2	1	+	5.2732516422516245	5.2732516422516245	GCGAATACCATTGTT
chr1	89843840	89843841	chr1:89843841:C:G	rs143417450	C	G	C	Sox1_MA0870.1	10	1	-	9.608336145511105	5.040763989938333	GACACTAGCAGTGCT
chr1	90764051	90764052	chr1:90764052:G:A	rs60908826	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr1	91322425	91322426	chr1:91322426:T:C	rs10801862	T	C	T	Sox1_MA0870.1	10	1	+	6.425194020263392	-0.38350306387294075	AACAGTATCATTGCA
chr1	91618053	91618054	chr1:91618054:A:G	rs2174952	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	91805767	91805768	chr1:91805768:T:G	rs17884569	T	G	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	91805793	91805794	chr1:91805794:A:G	rs284159	A	G	G	Sox1_MA0870.1	6	1	+	7.522593428808678	5.98398673566796	CACAATACCACTGTG
chr1	91820317	91820318	chr1:91820318:T:C	rs10874981	T	C	T	Sox1_MA0870.1	13	1	-	5.111940790860782	4.814919090812868	TACCATAACAGTGAT
chr1	91879983	91879984	chr1:91879984:C:A	rs2799510	C	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr1	91900702	91900703	chr1:91900703:C:T	rs17884452	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr1	91901490	91901491	chr1:91901491:G:A	rs528338535	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	92013803	92013804	chr1:92013804:G:T	rs72954747	G	T	G	Sox1_MA0870.1	8	1	-	6.603545732510003	0.7103760781917902	ACCAATATCTTTGTT
chr1	92641850	92641851	chr1:92641851:C:T	rs12025792	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	92756860	92756861	chr1:92756861:T:C	rs4847309	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	92854844	92854845	chr1:92854845:A:T	rs11164827	A	T	A	Sox1_MA0870.1	4	1	+	5.820247045888824	-0.9573312082813645	CGCAATTTCATTGGC
chr1	92915857	92915858	chr1:92915858:C:T	rs11164836	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr1	93276261	93276262	chr1:93276262:A:G	rs139026830	A	G	A	Sox1_MA0870.1	9	1	+	3.8517863863714226	-3.0569683929437987	GGCACTTCCATTGAG
chr1	93281308	93281309	chr1:93281309:T:C	rs11164888	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr1	93288374	93288375	chr1:93288375:C:T	rs6684908	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	93329608	93329609	chr1:93329609:A:T	rs2391254	A	T	A	Sox1_MA0870.1	7	1	-	4.951894352311609	5.393484232396023	GACAATATCATTACA
chr1	93341159	93341160	chr1:93341160:T:C	rs954946726	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	93444329	93444330	chr1:93444330:C:A	rs2391271	C	A	C	Sox1_MA0870.1	2	1	+	10.372686117354503	3.463931338039282	AACAATATCATTCTT
chr1	93531136	93531137	chr1:93531137:T:C	rs1079750	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr1	93702089	93702090	chr1:93702090:C:T	rs1891139	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr1	93711366	93711367	chr1:93711367:A:G	chr1:93711367:A:G	A	G	A	Sox1_MA0870.1	13	1	-	7.624611488985201	5.446956191534207	TTCACTTTCATTGTC
chr1	93848597	93848598	chr1:93848598:T:C	rs78969815	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr1	93848598	93848599	chr1:93848599:C:T	rs11165019	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr1	93976393	93976394	chr1:93976394:T:C	rs743117	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	94030696	94030697	chr1:94030697:G:A	rs2297671	G	A	G	Sox1_MA0870.1	7	1	+	4.096367856298578	4.493346184095086	AACACTCGCAGTGGT
chr1	94180789	94180790	chr1:94180790:T:C	rs17111205	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr1	94329388	94329389	chr1:94329389:G:A	rs143140572	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	94359106	94359107	chr1:94359107:C:T	rs12064428	C	T	C	Sox1_MA0870.1	12	1	-	5.2386466307470325	-1.6701081485681875	ATCACTATCACTGTT
chr1	94359107	94359108	chr1:94359108:A:G	rs2786906	A	G	G	Sox1_MA0870.1	11	1	-	5.2386466307470325	0.28325164493669874	ATCACTATCACTGTT
chr1	94373049	94373050	chr1:94373050:G:A	rs114844564	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr1	94683281	94683282	chr1:94683282:G:A	rs12739283	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	94800876	94800877	chr1:94800877:C:T	rs10493874	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	94862650	94862651	chr1:94862651:G:T	rs10493879	G	T	G	Sox1_MA0870.1	26	0	-	0	0	.
chr1	94887649	94887650	chr1:94887650:G:T	rs943199	G	T	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr1	94925723	94925724	chr1:94925724:C:T	rs149171141	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr1	94928795	94928796	chr1:94928796:T:A	rs1132	T	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr1	95145557	95145558	chr1:95145558:A:G	rs12239725	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr1	95805569	95805570	chr1:95805570:C:T	rs4345843	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr1	95825215	95825216	chr1:95825216:G:C	rs1342399	G	C	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	95912065	95912066	chr1:95912066:A:C	rs34830765	A	C	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	96004628	96004629	chr1:96004629:A:C	rs321252	A	C	C	Sox1_MA0870.1	17	0	-	0	0	.
chr1	96037013	96037014	chr1:96037014:C:G	rs161111	C	G	C	Sox1_MA0870.1	18	0	+	0	0	.
chr1	96327760	96327761	chr1:96327761:C:T	rs17114927	C	T	T	Sox1_MA0870.1	25	0	+	0	0	.
chr1	96327767	96327768	chr1:96327768:T:A	rs34949297	T	A	A	Sox1_MA0870.1	32	0	+	0	0	.
chr1	96481477	96481478	chr1:96481478:G:A	rs111708859	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr1	96642940	96642941	chr1:96642941:C:T	rs1325754	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	96887716	96887717	chr1:96887717:G:C	rs79648733	G	C	G	Sox1_MA0870.1	8	1	-	5.309780721851898	1.5392777289515611	AACACTTGCATTACT
chr1	97070502	97070503	chr1:97070503:T:C	rs535789218	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr1	97200859	97200860	chr1:97200860:T:G	rs112157846	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	97277905	97277906	chr1:97277906:T:C	chr1:97277906:T:C	T	C	T	Sox1_MA0870.1	1	1	-	5.528236896484109	1.4299462410909674	GACAATGAGATTGGA
chr1	97807179	97807180	chr1:97807180:A:C	rs191224074	A	C	A	Sox1_MA0870.1	11	1	-	5.345958298534967	-1.5567743883218648	AGCAATTGCATTTTT
chr1	98331556	98331557	chr1:98331557:G:C	rs1328316	G	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr1	98749445	98749446	chr1:98749446:A:T	rs67694167	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr1	98950514	98950515	chr1:98950515:G:A	rs309082	G	A	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	98950545	98950546	chr1:98950546:G:T	rs309083	G	T	T	Sox1_MA0870.1	12	1	+	5.221714741499117	-1.6870400378161037	AACAATAATACTGTC
chr1	99327618	99327619	chr1:99327619:A:C	rs10493910	A	C	A	Sox1_MA0870.1	18	0	+	0	0	.
chr1	99441380	99441381	chr1:99441381:G:C	rs115943349	G	C	G	Sox1_MA0870.1	32	0	+	0	0	.
chr1	99504437	99504438	chr1:99504438:G:T	rs12724806	G	T	G	Sox1_MA0870.1	3	1	-	8.425172978731212	13.510937903769387	AACCATATGATTGTT
chr1	99598821	99598822	chr1:99598822:A:G	rs6679163	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr1	99599042	99599043	chr1:99599043:A:G	rs6577389	A	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr1	99691260	99691261	chr1:99691261:T:C	rs7514151	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr1	99728748	99728749	chr1:99728749:C:G	rs7522921	C	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr1	99965115	99965116	chr1:99965116:T:A	rs114050933	T	A	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	100045298	100045299	chr1:100045299:T:G	rs834277	T	G	G	Sox1_MA0870.1	31	0	-	0	0	.
chr1	100045325	100045326	chr1:100045326:T:C	rs834278	T	C	C	Sox1_MA0870.1	4	1	-	5.0624158202091625	-1.7151624339610252	ATCAATAGCACTGCT
chr1	100354130	100354131	chr1:100354131:G:A	chr1:100354131:G:A	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	100354132	100354133	chr1:100354133:C:G	rs149981742	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	100354168	100354169	chr1:100354169:T:C	rs572059964	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr1	100459838	100459839	chr1:100459839:T:C	rs146551297	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	100459868	100459869	chr1:100459869:G:T	rs76551128	G	T	G	Sox1_MA0870.1	16	0	+	0	0	.
chr1	100576526	100576527	chr1:100576527:A:G	rs10783140	A	G	G	Sox1_MA0870.1	19	0	-	0	0	.
chr1	100584060	100584061	chr1:100584061:C:T	rs11803201	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr1	100584066	100584067	chr1:100584067:C:T	rs1577516	C	T	T	Sox1_MA0870.1	31	0	+	0	0	.
chr1	100747778	100747779	chr1:100747779:A:T	rs10493936	A	T	A	Sox1_MA0870.1	13	1	-	8.382987521462804	5.037461494873645	TTCACTATCATTGTG
chr1	101107851	101107852	chr1:101107852:C:T	rs12727236	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	101199077	101199078	chr1:101199078:T:C	rs34792655	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	101199087	101199088	chr1:101199088:T:C	rs10875357	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	101286230	101286231	chr1:101286231:A:G	rs7518031	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	101306084	101306085	chr1:101306085:T:C	rs12134178	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr1	101365301	101365302	chr1:101365302:C:T	rs11164177	C	T	C	Sox1_MA0870.1	0	1	-	7.515339920006948	8.857463062813702	GACACTAACATTCTT
chr1	101371255	101371256	chr1:101371256:T:C	rs17124335	T	C	T	Sox1_MA0870.1	9	1	-	5.377055917291251	-1.5316988620239687	AACACTTCCAATGCT
chr1	101400750	101400751	chr1:101400751:T:C	rs11164190	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	101820423	101820424	chr1:101820424:A:C	chr1:101820424:A:C	A	C	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	101820426	101820427	chr1:101820427:T:C	chr1:101820427:T:C	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	101965167	101965168	chr1:101965168:A:T	rs17435011	A	T	A	Sox1_MA0870.1	17	0	-	0	0	.
chr1	102892721	102892722	chr1:102892722:T:C	rs962453	T	C	T	Sox1_MA0870.1	1	1	-	8.445841064200415	4.347550408807274	TAAAATACCATTGTT
chr1	102920046	102920047	chr1:102920047:T:G	rs910502699	T	G	T	Sox1_MA0870.1	25	0	-	0	0	.
chr1	104073092	104073093	chr1:104073093:G:A	rs141938920	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr1	104239110	104239111	chr1:104239111:C:T	rs61788974	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	104248658	104248659	chr1:104248659:A:C	rs10127620	A	C	A	Sox1_MA0870.1	22	0	+	0	0	.
chr1	104463896	104463897	chr1:104463897:G:A	rs1115851	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	104539371	104539372	chr1:104539372:T:C	rs17021664	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr1	104561058	104561059	chr1:104561059:A:G	rs1597177	A	G	a	Sox1_MA0870.1	9	1	+	11.073681882129488	4.164927102814269	AACAATTCCATTGAA
chr1	105173481	105173482	chr1:105173482:T:A	rs192429804	T	A	T	Sox1_MA0870.1	30	0	-	0	0	.
chr1	105544543	105544544	chr1:105544544:T:C	rs777069	T	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr1	105633149	105633150	chr1:105633150:A:T	rs530679898	A	T	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	105867262	105867263	chr1:105867263:G:T	rs17426923	G	T	G	Sox1_MA0870.1	16	0	+	0	0	.
chr1	106515646	106515647	chr1:106515647:C:G	rs2031503	C	G	G	Sox1_MA0870.1	1	1	+	8.504999551063065	8.175849280514422	ACCAAAACCATTGTT
chr1	106789931	106789932	chr1:106789932:T:C	rs17017723	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	106793678	106793679	chr1:106793679:G:T	rs12097821	G	T	T	Sox1_MA0870.1	14	1	-	6.089977187216485	5.699973266912742	CACTCTTTCATTGTC
chr1	106954194	106954195	chr1:106954195:G:A	rs7520002	G	A	G	Sox1_MA0870.1	5	1	+	4.2758215915661815	6.159856336903408	CCCAAGGACATTGTT
chr1	107219835	107219836	chr1:107219836:C:G	rs74558995	C	G	C	Sox1_MA0870.1	27	0	-	0	0	.
chr1	107596902	107596903	chr1:107596903:G:A	rs17536557	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr1	107750135	107750136	chr1:107750136:C:T	rs12144218	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr1	107760299	107760300	chr1:107760300:G:A	rs12142335	G	A	G	Sox1_MA0870.1	14	1	+	3.6058506568861297	3.4305194198190856	AACCATAGCTTTGTG
chr1	108049926	108049927	chr1:108049927:T:C	rs17020764	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr1	109079730	109079731	chr1:109079731:C:G	rs145802019	C	G	c	Sox1_MA0870.1	18	0	+	0	0	.
chr1	109112159	109112160	chr1:109112160:A:G	rs72986849	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr1	109112171	109112172	chr1:109112172:T:C	rs637466	T	C	T	Sox1_MA0870.1	4	1	-	5.365885775899185	-1.4116924782710032	CACAATATGTTTGTT
chr1	109197505	109197506	chr1:109197506:C:G	rs61756684	C	G	C	Sox1_MA0870.1	6	1	-	3.2764290349939342	-0.5741632746985508	GTCAGTGACATTGTC
chr1	109200999	109201000	chr1:109201000:C:T	rs3736956	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	109225538	109225539	chr1:109225539:T:C	rs7547246	T	C	T	Sox1_MA0870.1	10	1	+	9.577978648883937	2.7692815647476032	CACAATAACATTCTT
chr1	109259305	109259306	chr1:109259306:T:C	rs606434	T	C	C	Sox1_MA0870.1	1	1	-	4.053786621193199	-0.044504034199941755	CACAATGGCACTGCC
chr1	109283623	109283624	chr1:109283624:C:A	rs78596170	C	A	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	109480809	109480810	chr1:109480810:G:A	rs485660	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	109804262	109804263	chr1:109804263:C:A	rs579035	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	109970739	109970740	chr1:109970740:T:A	rs114831731	T	A	T	Sox1_MA0870.1	11	1	+	3.201422139052403	-3.701310547804429	CCCAATACCCTTGCT
chr1	109980601	109980602	chr1:109980602:A:G	chr1:109980602:A:G	A	G	A	Sox1_MA0870.1	13	1	-	8.557457439358554	6.379802141907561	ACCACTGACATTGTA
chr1	109985782	109985783	chr1:109985783:A:T	rs143393587	A	T	A	Sox1_MA0870.1	11	1	-	4.06924057836914	-2.8334921084876923	ATCCATGACAGTGTC
chr1	109985797	109985798	chr1:109985798:G:A	chr1:109985798:G:A	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	110236461	110236462	chr1:110236462:A:G	rs11102066	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr1	110330546	110330547	chr1:110330547:T:C	rs12135320	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr1	110338035	110338036	chr1:110338036:A:G	rs72972990	A	G	A	Sox1_MA0870.1	4	1	+	6.78644080480286	0.00886255063267194	CACAATAAGAGTGCC
chr1	110346815	110346816	chr1:110346816:G:A	rs12143620	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr1	110435804	110435805	chr1:110435805:G:A	rs12563285	G	A	G	Sox1_MA0870.1	7	1	-	6.382541690589679	6.370712638041305	AACTCTGCCATTGTA
chr1	110518046	110518047	chr1:110518047:T:C	rs1281175	T	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	110556143	110556144	chr1:110556144:T:C	rs903050	T	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr1	110571110	110571111	chr1:110571111:C:T	rs61784695	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	110633364	110633365	chr1:110633365:A:C	rs884217	A	C	A	Sox1_MA0870.1	13	1	-	5.817331755018063	2.1747840283809903	ATCAATAACATGGTG
chr1	110714556	110714557	chr1:110714557:A:T	rs12074788	A	T	A	Sox1_MA0870.1	9	1	+	4.012404751060533	-2.896350028254687	ATCATTTTCAGTGTT
chr1	110945950	110945951	chr1:110945951:T:C	rs12145219	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr1	110967566	110967567	chr1:110967567:A:C	rs879181	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	111205181	111205182	chr1:111205182:C:T	rs574531344	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	111499572	111499573	chr1:111499573:T:C	rs1415792	T	C	C	Sox1_MA0870.1	6	1	-	5.265864583598219	3.7272578904574996	TTCCATACCATTGTG
chr1	111508083	111508084	chr1:111508084:G:A	rs755335344	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr1	111570923	111570924	chr1:111570924:A:G	rs115713343	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	111593335	111593336	chr1:111593336:T:C	rs1890548	T	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	111618360	111618361	chr1:111618361:T:C	rs12122511	T	C	t	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	111656549	111656550	chr1:111656550:T:G	rs750715701	T	G	T	Sox1_MA0870.1	28	0	-	0	0	.
chr1	111667084	111667085	chr1:111667085:G:A	rs116692473	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr1	112325324	112325325	chr1:112325325:A:G	rs4839242	A	G	A	Sox1_MA0870.1	3	1	+	3.900850531761525	-2.999739135435699	CCCAATAGCATTCTC
chr1	112794643	112794644	chr1:112794644:A:G	rs55989415	A	G	A	Sox1_MA0870.1	3	1	-	7.041962541833122	7.470492922872282	AACTATTTCAGTGTC
chr1	112879722	112879723	chr1:112879723:G:C	rs189962983	G	C	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	113057890	113057891	chr1:113057891:C:T	rs72683488	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr1	113125721	113125722	chr1:113125722:G:A	rs10494150	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	113308516	113308517	chr1:113308517:C:T	rs12048530	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr1	113308525	113308526	chr1:113308526:G:C	rs115819977	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr1	113947834	113947835	chr1:113947835:A:G	rs187214085	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr1	113991831	113991832	chr1:113991832:A:G	rs872661	A	G	A	Sox1_MA0870.1	10	1	-	4.917746572742368	-1.8909505113939642	ATTAATATCATTGCT
chr1	114009534	114009535	chr1:114009535:G:T	rs1039538	G	T	G	Sox1_MA0870.1	3	1	-	6.276012695598675	11.36177762063685	GACCAAAACATTGTT
chr1	114131963	114131964	chr1:114131964:C:G	rs115943992	C	G	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	114435400	114435401	chr1:114435401:C:A	rs34732139	C	A	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	115063546	115063547	chr1:115063547:C:T	rs115846566	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr1	115144644	115144645	chr1:115144645:C:T	rs7528116	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	115348534	115348535	chr1:115348535:A:G	rs4539131	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr1	115400522	115400523	chr1:115400523:G:A	rs114733576	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	115462086	115462087	chr1:115462087:G:A	rs531818616	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr1	115677319	115677320	chr1:115677320:A:G	rs11590213	A	G	a	Sox1_MA0870.1	6	1	-	8.023992714921876	3.607842427802976	AGCACTTCCAGTGTT
chr1	115727146	115727147	chr1:115727147:A:C	rs72554064	A	C	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	115745012	115745013	chr1:115745013:A:G	rs10801969	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	115767533	115767534	chr1:115767534:G:A	rs4263994	G	A	G	Sox1_MA0870.1	7	1	+	3.455047001617714	3.852025329414221	CCCACTAGCATTCTT
chr1	116106844	116106845	chr1:116106845:A:G	rs79777502	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr1	116255276	116255277	chr1:116255277:C:T	rs10924021	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr1	116352645	116352646	chr1:116352646:G:T	rs10924067	G	T	G	Sox1_MA0870.1	0	1	-	4.319956171195766	5.556253519750747	CACATTCACATTGTT
chr1	116773011	116773012	chr1:116773012:C:T	rs138475570	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	116796991	116796992	chr1:116796992:C:G	rs798024	C	G	G	Sox1_MA0870.1	7	1	-	7.718566866210004	7.685784366470472	AATAATTGCATTGTG
chr1	116951656	116951657	chr1:116951657:G:A	rs76670701	G	A	G	Sox1_MA0870.1	7	1	+	9.444248953928108	9.841227281724617	AACAATTGCATTCTT
chr1	117003941	117003942	chr1:117003942:A:T	rs75378515	A	T	A	Sox1_MA0870.1	0	1	+	9.830150087241623	7.891475981539163	ATCAATTACATTGGT
chr1	117007045	117007046	chr1:117007046:A:G	rs76234348	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr1	117147629	117147630	chr1:117147630:T:C	rs146484330	T	C	T	Sox1_MA0870.1	10	1	+	5.197000682062058	-1.6116964020742763	AACAATGACTTTGCA
chr1	117147649	117147650	chr1:117147650:G:A	rs10754339	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr1	117179264	117179265	chr1:117179265:C:A	rs10801935	C	A	C	Sox1_MA0870.1	19	0	+	0	0	.
chr1	117617113	117617114	chr1:117617114:C:G	rs3820504	C	G	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	117734629	117734630	chr1:117734630:C:T	rs17257582	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	118360354	118360355	chr1:118360355:A:G	rs2474937	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr1	119076056	119076057	chr1:119076057:T:G	rs3804553	T	G	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	119160289	119160290	chr1:119160290:A:G	rs12097967	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	119568633	119568634	chr1:119568634:T:C	rs12030462	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr1	119605948	119605949	chr1:119605949:A:G	rs76933797	A	G	a	Sox1_MA0870.1	6	1	+	7.251855842319509	5.713249149178791	CACCATAGCAGTGTC
chr1	119925863	119925864	chr1:119925864:T:C	rs6658796	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr1	120095222	120095223	chr1:120095223:G:A	rs74115534	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr1	120386976	120386977	chr1:120386977:G:A	rs147754724	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	120434002	120434003	chr1:120434003:G:A	rs3009751	G	A	g	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	121275637	121275638	chr1:121275638:C:T	rs141558743	C	T	C	Sox1_MA0870.1	12	1	-	5.3844054702776845	-1.5243493090375355	TTCAATATCATCGTG
chr1	122536139	122536140	chr1:122536140:T:A	rs1469977816	T	A	.	Sox1_MA0870.1	15	0	-	0	0	.
chr1	122552129	122552130	chr1:122552130:T:C	rs1256394570	T	C	.	Sox1_MA0870.1	7	1	-	5.4559754934247255	5.058997165628217	CACAAAAAGAGTGTT
chr1	122573564	122573565	chr1:122573565:T:A	chr1:122573565:T:A	T	A	.	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	122594270	122594271	chr1:122594271:A:G	rs1182239936	A	G	.	Sox1_MA0870.1	31	0	-	0	0	.
chr1	122671135	122671136	chr1:122671136:T:G	chr1:122671136:T:G	T	G	.	Sox1_MA0870.1	1	1	-	5.4559754934247255	1.6868351085802273	CACAAAAAGAGTGTT
chr1	122679610	122679611	chr1:122679611:G:C	rs1339206338	G	C	.	Sox1_MA0870.1	28	0	-	0	0	.
chr1	122698652	122698653	chr1:122698653:G:C	rs1487850595	G	C	.	Sox1_MA0870.1	26	0	-	0	0	.
chr1	122775842	122775843	chr1:122775843:G:A	rs1396127534	G	A	.	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	122828872	122828873	chr1:122828873:A:C	rs1288787527	A	C	.	Sox1_MA0870.1	22	0	-	0	0	.
chr1	122856764	122856765	chr1:122856765:C:A	rs1265720482	C	A	.	Sox1_MA0870.1	8	1	-	5.4559754934247255	5.04486893968778	CACAAAAAGAGTGTT
chr1	122880207	122880208	chr1:122880208:A:C	chr1:122880208:A:C	A	C	.	Sox1_MA0870.1	14	1	-	5.4559754934247255	3.7302934057066217	CACAAAAAGAGTGTT
chr1	122969612	122969613	chr1:122969613:C:G	rs1358306822	C	G	.	Sox1_MA0870.1	27	0	-	0	0	.
chr1	122975413	122975414	chr1:122975414:T:G	rs1437251492	T	G	.	Sox1_MA0870.1	1	1	-	5.4559754934247255	1.6868351085802273	CACAAAAAGAGTGTT
chr1	123020583	123020584	chr1:123020584:G:C	rs1359004972	G	C	.	Sox1_MA0870.1	28	0	-	0	0	.
chr1	123020611	123020612	chr1:123020612:G:C	rs1157778977	G	C	.	Sox1_MA0870.1	0	1	-	5.4559754934247255	5.3501496991729525	CACAAAAAGAGTGTT
chr1	123077020	123077021	chr1:123077021:T:A	rs1371309832	T	A	.	Sox1_MA0870.1	9	1	-	7.697100421988287	0.7883456426730656	CACAAAAAGATTGTT
chr1	123135991	123135992	chr1:123135992:T:C	rs1221148625	T	C	.	Sox1_MA0870.1	9	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr1	123153318	123153319	chr1:123153319:T:A	rs1253131834	T	A	.	Sox1_MA0870.1	18	0	-	0	0	.
chr1	123153327	123153328	chr1:123153328:T:A	rs1333712790	T	A	.	Sox1_MA0870.1	9	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr1	123161481	123161482	chr1:123161482:T:A	rs1225803580	T	A	.	Sox1_MA0870.1	18	0	-	0	0	.
chr1	123278578	123278579	chr1:123278579:G:T	rs1408648609	G	T	.	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	123283978	123283979	chr1:123283979:T:G	rs1336143733	T	G	.	Sox1_MA0870.1	22	0	-	0	0	.
chr1	123319859	123319860	chr1:123319860:A:G	rs1335923939	A	G	.	Sox1_MA0870.1	6	1	-	4.482926777710424	0.06677649059152413	CACAAATAGAGTGTT
chr1	123368144	123368145	chr1:123368145:T:A	rs1174547462	T	A	.	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	123450011	123450012	chr1:123450012:C:G	rs1309977358	C	G	.	Sox1_MA0870.1	12	1	-	5.4559754934247255	-1.4527792858904953	CACAAAAAGAGTGTT
chr1	123452735	123452736	chr1:123452736:T:G	chr1:123452736:T:G	T	G	.	Sox1_MA0870.1	9	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr1	123544660	123544661	chr1:123544661:G:A	rs1199707700	G	A	.	Sox1_MA0870.1	26	0	-	0	0	.
chr1	123545725	123545726	chr1:123545726:T:A	rs1356478079	T	A	.	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	123578296	123578297	chr1:123578297:C:G	rs1242621789	C	G	.	Sox1_MA0870.1	28	0	-	0	0	.
chr1	123653765	123653766	chr1:123653766:G:C	rs1240385405	G	C	.	Sox1_MA0870.1	26	0	-	0	0	.
chr1	123724119	123724120	chr1:123724120:A:G	rs1354028109	A	G	.	Sox1_MA0870.1	29	0	-	0	0	.
chr1	123753868	123753869	chr1:123753869:T:A	rs1447273868	T	A	.	Sox1_MA0870.1	17	0	-	0	0	.
chr1	123797748	123797749	chr1:123797749:T:A	chr1:123797749:T:A	T	A	.	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	123799267	123799268	chr1:123799268:T:C	rs1262483882	T	C	.	Sox1_MA0870.1	7	1	-	5.4559754934247255	5.058997165628217	CACAAAAAGAGTGTT
chr1	123799285	123799286	chr1:123799286:G:T	rs1338882017	G	T	.	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	123842607	123842608	chr1:123842608:G:A	rs1307092690	G	A	.	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	123842608	123842609	chr1:123842609:T:A	rs1403631407	T	A	.	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	123849039	123849040	chr1:123849040:T:G	rs1359234023	T	G	.	Sox1_MA0870.1	17	0	-	0	0	.
chr1	123861285	123861286	chr1:123861286:G:C	rs1164022879	G	C	.	Sox1_MA0870.1	7	1	-	5.026214665888684	5.058997165628217	CACAAAACGAGTGTT
chr1	123881680	123881681	chr1:123881681:T:A	rs1292812960	T	A	.	Sox1_MA0870.1	9	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr1	123881695	123881696	chr1:123881696:T:A	rs1330800619	T	A	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	123923299	123923300	chr1:123923300:T:A	rs1261996154	T	A	.	Sox1_MA0870.1	9	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr1	123969837	123969838	chr1:123969838:T:C	rs1400501154	T	C	.	Sox1_MA0870.1	34	0	-	0	0	.
chr1	124038872	124038873	chr1:124038873:G:A	rs1224685951	G	A	.	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	124082360	124082361	chr1:124082361:C:T	rs1396326912	C	T	.	Sox1_MA0870.1	19	0	-	0	0	.
chr1	124139743	124139744	chr1:124139744:A:T	rs1459204944	A	T	.	Sox1_MA0870.1	20	0	-	0	0	.
chr1	124139746	124139747	chr1:124139747:G:C	rs1347932828	G	C	.	Sox1_MA0870.1	17	0	-	0	0	.
chr1	124139761	124139762	chr1:124139762:G:T	rs1307013889	G	T	.	Sox1_MA0870.1	2	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr1	124173338	124173339	chr1:124173339:C:A	rs1226966805	C	A	.	Sox1_MA0870.1	28	0	-	0	0	.
chr1	124245080	124245081	chr1:124245081:T:A	rs1222515805	T	A	.	Sox1_MA0870.1	9	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr1	124282282	124282283	chr1:124282283:C:T	rs1259040357	C	T	.	Sox1_MA0870.1	12	1	-	5.4559754934247255	-1.4527792858904953	CACAAAAAGAGTGTT
chr1	124282295	124282296	chr1:124282296:G:T	rs1246196204	G	T	.	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	124310861	124310862	chr1:124310862:A:C	rs1235599784	A	C	.	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	124365915	124365916	chr1:124365916:C:G	rs1164466485	C	G	.	Sox1_MA0870.1	23	0	-	0	0	.
chr1	124473486	124473487	chr1:124473487:C:G	chr1:124473487:C:G	C	G	.	Sox1_MA0870.1	34	0	-	0	0	.
chr1	124492184	124492185	chr1:124492185:A:C	rs1459428704	A	C	.	Sox1_MA0870.1	27	0	-	0	0	.
chr1	124492209	124492210	chr1:124492210:G:C	rs1176183234	G	C	.	Sox1_MA0870.1	2	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr1	124499654	124499655	chr1:124499655:A:G	rs1369011890	A	G	.	Sox1_MA0870.1	29	0	-	0	0	.
chr1	124499664	124499665	chr1:124499665:C:T	rs1462262323	C	T	.	Sox1_MA0870.1	19	0	-	0	0	.
chr1	124499673	124499674	chr1:124499674:C:T	rs1439207211	C	T	.	Sox1_MA0870.1	10	1	-	5.4559754934247255	0.888403337851953	CACAAAAAGAGTGTT
chr1	124499688	124499689	chr1:124499689:A:T	rs1391620134	A	T	.	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	124521423	124521424	chr1:124521424:A:G	rs1265194102	A	G	.	Sox1_MA0870.1	10	1	-	7.2859938682513405	0.47729678411500764	CACAAAAATATTGTT
chr1	124568660	124568661	chr1:124568661:T:C	rs1420811534	T	C	.	Sox1_MA0870.1	7	1	-	5.4559754934247255	5.058997165628217	CACAAAAAGAGTGTT
chr1	124708007	124708008	chr1:124708008:G:C	rs1253082363	G	C	.	Sox1_MA0870.1	28	0	-	0	0	.
chr1	124726021	124726022	chr1:124726022:T:G	rs1211867775	T	G	.	Sox1_MA0870.1	33	0	-	0	0	.
chr1	124726049	124726050	chr1:124726050:T:C	rs1157165128	T	C	.	Sox1_MA0870.1	5	1	-	5.4559754934247255	3.5719407480874996	CACAAAAAGAGTGTT
chr1	124925931	124925932	chr1:124925932:A:C	rs1366099704	A	C	.	Sox1_MA0870.1	15	0	+	0	0	.
chr1	125080368	125080369	chr1:125080369:C:T	rs1489436730	C	T	.	Sox1_MA0870.1	29	0	+	0	0	.
chr1	144996164	144996165	chr1:144996165:A:G	chr1:144996165:A:G	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	145711945	145711946	chr1:145711946:T:G	rs10910845	T	G	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	145823079	145823080	chr1:145823080:A:G	rs1386606282	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	147041616	147041617	chr1:147041617:G:C	rs72704288	G	C	.	Sox1_MA0870.1	0	1	-	4.296867601357551	4.191041807105778	CAAAATGGCATTGAT
chr1	147506138	147506139	chr1:147506139:C:T	rs17160295	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	148334627	148334628	chr1:148334628:C:T	rs187833271	C	T	.	Sox1_MA0870.1	22	0	-	0	0	.
chr1	148334631	148334632	chr1:148334632:G:A	rs141282838	G	A	.	Sox1_MA0870.1	18	0	-	0	0	.
chr1	148334654	148334655	chr1:148334655:C:T	rs115529186	C	T	.	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	148929637	148929638	chr1:148929638:G:A	rs682536	G	A	-	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	150165685	150165686	chr1:150165686:A:G	rs16834580	A	G	A	Sox1_MA0870.1	7	1	+	8.31580996227258	7.918831634476071	GGCAATAACAGTGTG
chr1	150213485	150213486	chr1:150213486:C:A	rs942451	C	A	C	Sox1_MA0870.1	18	0	+	0	0	.
chr1	150269221	150269222	chr1:150269222:G:A	rs113335667	G	A	G	Sox1_MA0870.1	12	1	+	3.407223233238904	-3.5015315460763166	ACCAATTCCAGGGTT
chr1	150381799	150381800	chr1:150381800:G:A	rs834233	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr1	150749084	150749085	chr1:150749085:A:G	rs181085131	A	G	A	Sox1_MA0870.1	10	1	-	10.33980045608802	3.5311033719516853	TTCAATATCATTGTG
chr1	150787697	150787698	chr1:150787698:A:G	rs12125650	A	G	A	Sox1_MA0870.1	7	1	+	7.532914184540525	7.135935856744018	AACACATACAGTGTT
chr1	152035070	152035071	chr1:152035071:T:C	rs141679346	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	152043948	152043949	chr1:152043949:A:G	rs3007680	A	G	G	Sox1_MA0870.1	5	1	-	5.296137943211474	-1.6070268154362857	CACTATACCATTGAA
chr1	152143761	152143762	chr1:152143762:G:T	rs3122305	G	T	a	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	152308695	152308696	chr1:152308696:T:G	rs74129455	T	G	-	Sox1_MA0870.1	25	0	-	0	0	.
chr1	152312622	152312623	chr1:152312623:C:T	rs74129461	C	T	-	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	152313555	152313556	chr1:152313556:C:T	rs11588170	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr1	152313563	152313564	chr1:152313564:C:T	rs76955400	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr1	152680848	152680849	chr1:152680849:A:C	rs10788844	A	C	-	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	153231784	153231785	chr1:153231785:G:A	rs35778435	G	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	153244886	153244887	chr1:153244887:A:G	rs11205248	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr1	153572580	153572581	chr1:153572581:A:G	rs533536756	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	153572594	153572595	chr1:153572595:C:T	rs923192714	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	153824253	153824254	chr1:153824254:T:C	rs75860520	T	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr1	153954793	153954794	chr1:153954794:T:C	rs10908558	T	C	T	Sox1_MA0870.1	5	1	+	4.051458418545811	-2.851706340101948	AACACTTCAAGTGCT
chr1	153991506	153991507	chr1:153991507:A:G	rs114120114	A	G	a	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	154312417	154312418	chr1:154312418:A:G	rs35800693	A	G	a	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	154608106	154608107	chr1:154608107:T:A	chr1:154608107:T:A	T	A	t	Sox1_MA0870.1	16	0	-	0	0	.
chr1	154720527	154720528	chr1:154720528:T:C	rs77510509	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr1	154759831	154759832	chr1:154759832:A:G	rs1553611	A	G	G	Sox1_MA0870.1	28	0	-	0	0	.
chr1	155045188	155045189	chr1:155045189:T:C	rs114543508	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr1	155103566	155103567	chr1:155103567:C:T	rs4625273	C	T	c	Sox1_MA0870.1	12	1	-	3.438295641416621	-3.470459137898599	CTCAATAGCAGCGCT
chr1	155202126	155202127	chr1:155202127:A:G	rs143606150	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	155231398	155231399	chr1:155231399:G:A	rs4043	G	A	a	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	155379954	155379955	chr1:155379955:A:G	rs148421014	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	155513782	155513783	chr1:155513783:C:T	rs147251106	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr1	155563361	155563362	chr1:155563362:G:A	rs148794484	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	155563376	155563377	chr1:155563377:C:T	rs571018572	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	155688268	155688269	chr1:155688269:A:G	rs114089731	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	155688293	155688294	chr1:155688294:T:C	rs2666826	T	C	C	Sox1_MA0870.1	14	1	+	3.762611699674271	2.2516022951928663	GACACTGGGATCGTT
chr1	155829091	155829092	chr1:155829092:C:A	rs80115265	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	156026104	156026105	chr1:156026105:G:T	rs528430139	G	T	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	157139686	157139687	chr1:157139687:G:A	rs6427352	G	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr1	157175758	157175759	chr1:157175759:T:C	rs115190224	T	C	t	Sox1_MA0870.1	-1	0	+	0	0	.
chr1	157336473	157336474	chr1:157336474:T:C	rs4661119	T	C	t	Sox1_MA0870.1	30	0	-	0	0	.
chr1	157646511	157646512	chr1:157646512:A:G	rs12097236	A	G	C	Sox1_MA0870.1	15	0	+	0	0	.
chr1	158204323	158204324	chr1:158204324:A:C	rs638814	A	C	.	Sox1_MA0870.1	7	1	-	3.965402189896444	4.01001374218435	CACACTTTCAGTTTT
chr1	158495150	158495151	chr1:158495151:C:T	rs1259002340	C	T	C	Sox1_MA0870.1	13	1	+	4.962358125030276	7.140013422481269	ATGAATAGCATTGCT
chr1	158520994	158520995	chr1:158520995:A:T	rs74802440	A	T	A	Sox1_MA0870.1	26	0	-	0	0	.
chr1	158699991	158699992	chr1:158699992:C:T	rs79973962	C	T	C	Sox1_MA0870.1	8	1	+	9.200564290067636	5.018954743430352	CACAATACCATCGTA
chr1	158741503	158741504	chr1:158741504:A:C	rs2852643	A	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	158773578	158773579	chr1:158773579:T:C	rs73015561	T	C	T	Sox1_MA0870.1	10	1	+	6.5482712338649955	-0.26042585027133835	CTCAATTTCATTGAA
chr1	158833429	158833430	chr1:158833430:C:T	rs61830771	C	T	c	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	158883630	158883631	chr1:158883631:T:C	rs2852665	T	C	T	Sox1_MA0870.1	10	1	+	4.755410801977643	-2.053286282158691	AACAATGTCCTTGCA
chr1	158883639	158883640	chr1:158883640:T:C	rs2852666	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr1	158951491	158951492	chr1:158951492:A:C	rs72704930	A	C	C	Sox1_MA0870.1	1	1	+	3.106795436510179	-0.6623449483343206	GACAATATCAGAGCC
chr1	159005658	159005659	chr1:159005659:C:A	rs856069	C	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr1	159120465	159120466	chr1:159120466:T:C	rs1002408	T	C	T	Sox1_MA0870.1	13	1	-	4.83064671448969	4.5336250144417765	AACAATAGCTGTGAT
chr1	159180455	159180456	chr1:159180456:T:G	rs2253114	T	G	T	Sox1_MA0870.1	6	1	-	5.290543307994881	-0.0986556948383207	GAAAATAATATTGTT
chr1	159300351	159300352	chr1:159300352:C:G	rs72713644	C	G	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	159748521	159748522	chr1:159748522:G:A	rs4255379	G	A	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	159979860	159979861	chr1:159979861:T:C	rs2789425	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	159982098	159982099	chr1:159982099:C:G	rs147710557	C	G	C	Sox1_MA0870.1	30	0	-	0	0	.
chr1	159992272	159992273	chr1:159992273:T:C	rs2486257	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr1	160124853	160124854	chr1:160124854:A:G	rs1023421	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	160285210	160285211	chr1:160285211:C:G	rs186324994	C	G	C	Sox1_MA0870.1	20	0	-	0	0	.
chr1	160285212	160285213	chr1:160285213:G:A	rs12086288	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr1	160363155	160363156	chr1:160363156:A:C	chr1:160363156:A:C	A	C	A	Sox1_MA0870.1	25	0	+	0	0	.
chr1	160523016	160523017	chr1:160523017:C:G	rs181265285	C	G	C	Sox1_MA0870.1	11	1	+	5.090321002596863	3.1429833015503643	AACACTGCCAGCGTC
chr1	160867137	160867138	chr1:160867138:G:A	rs11265501	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	160869162	160869163	chr1:160869163:A:G	rs4017459	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr1	160891441	160891442	chr1:160891442:A:T	rs57704705	A	T	a	Sox1_MA0870.1	29	0	+	0	0	.
chr1	161066681	161066682	chr1:161066682:G:A	rs4617422	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr1	161072272	161072273	chr1:161072273:C:A	rs12116949	C	A	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	161390644	161390645	chr1:161390645:C:T	rs4077631	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr1	161428071	161428072	chr1:161428072:T:C	rs115676919	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	161523891	161523892	chr1:161523892:G:A	rs1012032638	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr1	161523904	161523905	chr1:161523905:G:A	rs41297664	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr1	161523912	161523913	chr1:161523913:A:C	chr1:161523913:A:C	A	C	A	Sox1_MA0870.1	11	1	-	5.563803325343615	-1.338929361513217	GACAGTAGCATTGGT
chr1	161523918	161523919	chr1:161523919:A:G	rs148520606	A	G	A	Sox1_MA0870.1	5	1	-	5.563803325343615	-1.339361433304144	GACAGTAGCATTGGT
chr1	161523920	161523921	chr1:161523921:T:C	rs572593746	T	C	T	Sox1_MA0870.1	3	1	-	5.563803325343615	-1.3367863418536103	GACAGTAGCATTGGT
chr1	161523921	161523922	chr1:161523922:G:A	rs185053150	G	A	G	Sox1_MA0870.1	2	1	-	5.563803325343615	-1.3449514539716052	GACAGTAGCATTGGT
chr1	161523924	161523925	chr1:161523925:A:C	rs41297666	A	C	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	161523924	161523925	chr1:161523925:A:G	chr1:161523925:A:G	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	161523925	161523926	chr1:161523926:G:A	rs564708445	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	161523928	161523929	chr1:161523929:A:G	rs41297668	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	161523932	161523933	chr1:161523933:A:G	rs41297670	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	161523933	161523934	chr1:161523934:C:T	rs141404544	C	T	c	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	161836565	161836566	chr1:161836566:G:C	rs7535349	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr1	162205621	162205622	chr1:162205622:G:A	rs4657169	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	162347466	162347467	chr1:162347467:G:A	rs392829	G	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	162364411	162364412	chr1:162364412:T:A	rs78778716	T	A	T	Sox1_MA0870.1	20	0	-	0	0	.
chr1	162366454	162366455	chr1:162366455:T:G	rs151475	T	G	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	162840672	162840673	chr1:162840673:C:A	rs72713314	C	A	C	Sox1_MA0870.1	29	0	+	0	0	.
chr1	162878229	162878230	chr1:162878230:A:C	rs79884322	A	C	A	Sox1_MA0870.1	24	0	-	0	0	.
chr1	162878230	162878231	chr1:162878231:G:C	rs78279153	G	C	G	Sox1_MA0870.1	23	0	-	0	0	.
chr1	162878261	162878262	chr1:162878262:T:C	rs78038362	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	162955062	162955063	chr1:162955063:C:G	rs74117710	C	G	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	163271707	163271708	chr1:163271708:T:C	rs56076418	T	C	T	Sox1_MA0870.1	10	1	+	4.46279934336605	-2.345897740770283	GACATTTGGATTGTT
chr1	163381927	163381928	chr1:163381928:T:G	rs3010344	T	G	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	163396014	163396015	chr1:163396015:T:A	chr1:163396015:T:A	T	A	T	Sox1_MA0870.1	9	1	-	6.034892599071322	-0.8738621802438985	CTCATTAGCATTGTT
chr1	164540468	164540469	chr1:164540469:G:A	rs10918034	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	164558834	164558835	chr1:164558835:G:T	rs900042590	G	T	G	Sox1_MA0870.1	28	0	+	0	0	.
chr1	164701285	164701286	chr1:164701286:A:G	rs1686180	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr1	165054748	165054749	chr1:165054749:T:C	rs1494416	T	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr1	165162057	165162058	chr1:165162058:G:T	rs2348247	G	T	G	Sox1_MA0870.1	21	0	-	0	0	.
chr1	165351733	165351734	chr1:165351734:G:A	rs12126669	G	A	G	Sox1_MA0870.1	2	1	-	5.574433760570409	-1.3343210187448116	CACAAAAAAATTGTT
chr1	165383786	165383787	chr1:165383787:A:G	rs1501492	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	165597915	165597916	chr1:165597916:A:G	rs17408590	A	G	A	Sox1_MA0870.1	9	1	+	5.08474954583294	-1.8240052334822807	AACAATTACACTGAC
chr1	165830481	165830482	chr1:165830482:G:T	rs61802906	G	T	g	Sox1_MA0870.1	19	0	-	0	0	.
chr1	166062306	166062307	chr1:166062307:C:G	rs74118964	C	G	C	Sox1_MA0870.1	10	1	-	5.815464544208094	1.2478923886353215	ATCAAATGCAGTGTT
chr1	166283440	166283441	chr1:166283441:G:C	rs539385918	G	C	G	Sox1_MA0870.1	25	0	+	0	0	.
chr1	166352800	166352801	chr1:166352801:C:T	rs11587733	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr1	166355108	166355109	chr1:166355109:A:G	rs148552395	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr1	166571162	166571163	chr1:166571163:T:C	rs12143336	T	C	T	Sox1_MA0870.1	4	1	-	9.546071499124853	2.768493244954666	AGCAATAACATTGCA
chr1	166571174	166571175	chr1:166571175:T:C	rs17430677	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	166579771	166579772	chr1:166579772:A:G	rs2119902	A	G	G	Sox1_MA0870.1	6	1	-	6.7292673392777465	2.3131170521588467	GACATTTACATTGTA
chr1	166930023	166930024	chr1:166930024:A:G	rs4657614	A	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	167163498	167163499	chr1:167163499:T:G	rs34758860	T	G	t	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	167312909	167312910	chr1:167312910:G:A	rs2146727	G	A	A	Sox1_MA0870.1	20	0	+	0	0	.
chr1	167430085	167430086	chr1:167430086:C:T	rs1214615	C	T	T	Sox1_MA0870.1	12	1	-	3.4229422707627846	-3.485812508552435	GTCCCTAGCAGTGTT
chr1	167492084	167492085	chr1:167492085:T:C	rs858546	T	C	C	Sox1_MA0870.1	22	0	+	0	0	.
chr1	167522247	167522248	chr1:167522248:A:C	rs858535	A	C	A	Sox1_MA0870.1	15	0	-	0	0	.
chr1	167634519	167634520	chr1:167634520:T:C	rs16859347	T	C	T	Sox1_MA0870.1	1	1	-	5.49233561915503	1.394044963761889	CACAATAGCATTACC
chr1	167638251	167638252	chr1:167638252:A:T	rs3738225	A	T	A	Sox1_MA0870.1	16	0	-	0	0	.
chr1	167638271	167638272	chr1:167638272:G:A	rs947361431	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	167715829	167715830	chr1:167715830:T:C	rs73035771	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr1	167808751	167808752	chr1:167808752:T:G	rs6427107	T	G	G	Sox1_MA0870.1	13	1	+	5.199128961851525	1.5565812352144515	TACACTAACATAGTG
chr1	167837691	167837692	chr1:167837692:G:T	rs1034466	G	T	T	Sox1_MA0870.1	28	0	+	0	0	.
chr1	167856246	167856247	chr1:167856247:T:C	rs2071921	T	C	t	Sox1_MA0870.1	5	1	+	3.7055732898474405	-3.197591468800319	ACCAATGACAATGTA
chr1	167875657	167875658	chr1:167875658:A:T	rs12754453	A	T	A	Sox1_MA0870.1	18	0	+	0	0	.
chr1	168288261	168288262	chr1:168288262:T:C	rs2300579	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	168428175	168428176	chr1:168428176:A:G	rs2268541	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	168484156	168484157	chr1:168484157:A:T	rs858113	A	T	T	Sox1_MA0870.1	13	1	-	6.7159853420457765	3.370459315456618	AGAAATAACATTGTT
chr1	168484189	168484190	chr1:168484190:C:G	rs10918906	C	G	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	168671768	168671769	chr1:168671769:T:A	rs12750484	T	A	A	Sox1_MA0870.1	11	1	+	4.88086236214114	-2.021870324715692	TACTATCACATTGTT
chr1	168920741	168920742	chr1:168920742:C:A	rs190340769	C	A	C	Sox1_MA0870.1	28	0	-	0	0	.
chr1	168920747	168920748	chr1:168920748:T:C	rs7541615	T	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr1	168972651	168972652	chr1:168972652:C:T	rs10919026	C	T	c	Sox1_MA0870.1	26	0	-	0	0	.
chr1	168991976	168991977	chr1:168991977:A:G	chr1:168991977:A:G	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	169111196	169111197	chr1:169111197:T:C	rs1200137	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	169217794	169217795	chr1:169217795:C:G	rs150537477	C	G	c	Sox1_MA0870.1	18	0	+	0	0	.
chr1	169354303	169354304	chr1:169354304:C:T	rs10800435	C	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr1	169509022	169509023	chr1:169509023:G:T	rs10919181	G	T	G	Sox1_MA0870.1	30	0	+	0	0	.
chr1	169553392	169553393	chr1:169553393:T:A	rs10919191	T	A	A	Sox1_MA0870.1	13	1	+	3.623569613742283	0.27804358715312405	CTCAACATCAGTGTT
chr1	169858603	169858604	chr1:169858604:T:C	chr1:169858604:T:C	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	169858614	169858615	chr1:169858615:A:G	rs717481	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	169859185	169859186	chr1:169859186:G:A	rs17602701	G	A	G	Sox1_MA0870.1	2	1	-	3.5956588231953255	-3.3130959561198954	AGCGATTCCATTGTG
chr1	170377226	170377227	chr1:170377227:A:G	rs11801825	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr1	170665345	170665346	chr1:170665346:C:T	rs72705052	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr1	170807707	170807708	chr1:170807708:G:C	rs55813298	G	C	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	171134101	171134102	chr1:171134102:T:C	rs2064080	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	171258347	171258348	chr1:171258348:A:G	rs12141555	A	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr1	171267451	171267452	chr1:171267452:A:G	rs527644997	A	G	A	Sox1_MA0870.1	10	1	-	5.578900592012156	-1.2297964921241777	CACAGTATCATTGCC
chr1	171367202	171367203	chr1:171367203:C:G	rs1018390	C	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	171473370	171473371	chr1:171473371:G:A	rs7550216	G	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	171664000	171664001	chr1:171664001:T:C	rs76809837	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	171664028	171664029	chr1:171664029:T:C	rs73041958	T	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr1	171850877	171850878	chr1:171850878:G:C	rs10798706	G	C	G	Sox1_MA0870.1	2	1	-	8.89296978964112	1.9842150103259004	CACAAAAGCATTGCT
chr1	171984370	171984371	chr1:171984371:A:C	rs76560907	A	C	A	Sox1_MA0870.1	14	1	-	4.432718271415064	2.7070361836969608	AACAAGGCCAGTGCT
chr1	171984378	171984379	chr1:171984379:C:G	rs185676752	C	G	C	Sox1_MA0870.1	6	1	-	4.432718271415064	0.5821259617225807	AACAAGGCCAGTGCT
chr1	172394594	172394595	chr1:172394595:C:G	rs79093075	C	G	C	Sox1_MA0870.1	10	1	-	4.8629111707420325	0.2953390151692601	AACAATGACAGAGCT
chr1	172609681	172609682	chr1:172609682:G:A	rs1174043545	G	A	G	Sox1_MA0870.1	2	1	-	9.774039113104086	2.865284333788866	AACACATACATTGTT
chr1	172616515	172616516	chr1:172616516:A:G	rs9425646	A	G	G	Sox1_MA0870.1	13	1	+	3.6276781535368463	3.330656453488933	TACAACAGCATTGAC
chr1	172616775	172616776	chr1:172616776:C:T	rs576813240	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr1	172681125	172681126	chr1:172681126:C:T	rs142552646	C	T	C	Sox1_MA0870.1	14	1	+	7.001508738936074	8.512518143417479	AACACTTGCAGTGGC
chr1	172711428	172711429	chr1:172711429:C:T	rs56663247	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr1	172875109	172875110	chr1:172875110:T:C	rs12136659	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr1	172884319	172884320	chr1:172884320:C:T	rs7517810	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr1	172952586	172952587	chr1:172952587:G:A	rs10912501	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	173039427	173039428	chr1:173039428:T:C	rs16845306	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr1	173112263	173112264	chr1:173112264:A:T	rs17372073	A	T	A	Sox1_MA0870.1	21	0	-	0	0	.
chr1	173329909	173329910	chr1:173329910:A:C	rs183538120	A	C	A	Sox1_MA0870.1	5	1	-	5.579754899069721	-1.3234098595780375	GACACTGGCATTTTT
chr1	173329924	173329925	chr1:173329925:G:A	rs7526970	G	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	173402067	173402068	chr1:173402068:T:C	rs11809193	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	173427542	173427543	chr1:173427543:G:A	rs10737301	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr1	173430271	173430272	chr1:173430272:T:G	rs113786438	T	G	T	Sox1_MA0870.1	15	0	+	0	0	.
chr1	173475505	173475506	chr1:173475506:T:C	rs9425722	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	173475506	173475507	chr1:173475507:G:A	rs35152701	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	173504573	173504574	chr1:173504574:G:C	rs912768	G	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	173570497	173570498	chr1:173570498:G:A	rs80054184	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr1	173862962	173862963	chr1:173862963:G:A	rs9660185	G	A	G	Sox1_MA0870.1	8	1	-	5.409405193907234	1.2277956472699514	CACAATCTCATTGAA
chr1	173862979	173862980	chr1:173862980:A:G	rs79243836	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	174991323	174991324	chr1:174991324:C:T	rs3766697	C	T	C	Sox1_MA0870.1	2	1	+	5.233054165099384	-1.6757006142158368	TACAATAACATTTGT
chr1	175132499	175132500	chr1:175132500:A:C	rs80057632	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr1	175154721	175154722	chr1:175154722:C:A	rs6702010	C	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	175154760	175154761	chr1:175154761:G:C	rs6677097	G	C	G	Sox1_MA0870.1	34	0	+	0	0	.
chr1	175563050	175563051	chr1:175563051:A:T	rs10158732	A	T	A	Sox1_MA0870.1	10	1	-	6.70006420299015	-0.10863288114618308	GACAAATACATTGCC
chr1	175564903	175564904	chr1:175564904:C:T	rs78083726	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	175564906	175564907	chr1:175564907:C:T	chr1:175564907:C:T	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	175673688	175673689	chr1:175673689:C:T	rs139984092	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	175784435	175784436	chr1:175784436:T:A	rs11806519	T	A	T	Sox1_MA0870.1	5	1	+	7.406345443891332	2.3872154305807967	CACAATAACATGGCT
chr1	177687414	177687415	chr1:177687415:G:A	rs7547510	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr1	177883653	177883654	chr1:177883654:C:A	rs10913454	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr1	177958518	177958519	chr1:177958519:C:A	rs16828589	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	178012424	178012425	chr1:178012425:G:A	rs11584600	G	A	G	Sox1_MA0870.1	2	1	-	10.065797507083536	3.1570427277683146	AACAAAAGCAGTGTT
chr1	178060878	178060879	chr1:178060879:A:G	rs115496402	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr1	178283097	178283098	chr1:178283098:C:A	rs548322153	C	A	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	178344505	178344506	chr1:178344506:T:C	rs74131329	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	178573462	178573463	chr1:178573463:G:A	rs143218531	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr1	179326872	179326873	chr1:179326873:C:T	rs6699698	C	T	T	Sox1_MA0870.1	16	0	+	0	0	.
chr1	179484856	179484857	chr1:179484857:A:C	rs36027796	A	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	179599870	179599871	chr1:179599871:T:C	rs72706714	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	180144887	180144888	chr1:180144888:C:T	rs7551902	C	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	180169582	180169583	chr1:180169583:G:A	rs61828294	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr1	180503375	180503376	chr1:180503376:G:A	rs17300712	G	A	G	Sox1_MA0870.1	2	1	-	5.541811142229837	-1.3669436370853834	AACACTTTCTTTGTA
chr1	180563377	180563378	chr1:180563378:A:G	rs61811629	A	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	180563389	180563390	chr1:180563390:T:C	rs61811630	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	180568563	180568564	chr1:180568564:T:C	rs17373022	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	180787919	180787920	chr1:180787920:A:G	rs3761904	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr1	180893854	180893855	chr1:180893855:G:T	rs12143674	G	T	G	Sox1_MA0870.1	27	0	+	0	0	.
chr1	181088051	181088052	chr1:181088052:A:T	rs4652560	A	T	T	Sox1_MA0870.1	34	0	+	0	0	.
chr1	181166261	181166262	chr1:181166262:C:T	rs75708994	C	T	C	Sox1_MA0870.1	8	1	+	6.851335501627345	2.6697259549900623	TACAGTACCATTGTG
chr1	181174950	181174951	chr1:181174951:G:A	rs4652577	G	A	A	Sox1_MA0870.1	10	1	+	3.917197794668621	-0.6503743609041518	GGCACTAGGAGTGTT
chr1	181191040	181191041	chr1:181191041:C:A	rs61746380	C	A	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	181249352	181249353	chr1:181249353:G:A	rs1841117	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr1	181643800	181643801	chr1:181643801:C:T	rs10910978	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr1	181765785	181765786	chr1:181765786:T:A	rs141303040	T	A	T	Sox1_MA0870.1	31	0	+	0	0	.
chr1	181783392	181783393	chr1:181783393:A:T	rs77483262	A	T	T	Sox1_MA0870.1	24	0	+	0	0	.
chr1	182094827	182094828	chr1:182094828:T:G	rs7545241	T	G	T	Sox1_MA0870.1	33	0	-	0	0	.
chr1	182314435	182314436	chr1:182314436:G:C	rs16858833	G	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr1	182340020	182340021	chr1:182340021:T:C	rs35245473	T	C	T	Sox1_MA0870.1	11	1	+	7.194197040196857	2.238802054386523	CACAATCACATTGCG
chr1	182444413	182444414	chr1:182444414:G:A	rs73057336	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	182579471	182579472	chr1:182579472:C:A	rs557934	C	A	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	182594701	182594702	chr1:182594702:T:C	chr1:182594702:T:C	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr1	182606535	182606536	chr1:182606536:G:A	rs3754289	G	A	G	Sox1_MA0870.1	12	1	+	7.422789715917219	0.5140349366019986	AACAAAGGCATTGAT
chr1	182698907	182698908	chr1:182698908:A:C	rs12132455	A	C	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	182702968	182702969	chr1:182702969:G:A	rs7512765	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	182795968	182795969	chr1:182795969:C:T	rs6698614	C	T	C	Sox1_MA0870.1	12	1	-	11.480304395951817	4.571549616636597	CACACTGACATTGTC
chr1	182993889	182993890	chr1:182993890:T:G	chr1:182993890:T:G	T	G	T	Sox1_MA0870.1	16	0	-	0	0	.
chr1	183020230	183020231	chr1:183020231:C:T	rs10797813	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	183060843	183060844	chr1:183060844:G:T	rs73051750	G	T	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	183190241	183190242	chr1:183190242:T:C	rs1005716	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr1	183339651	183339652	chr1:183339652:A:G	rs2485930	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	183470483	183470484	chr1:183470484:T:C	rs916859617	T	C	T	Sox1_MA0870.1	10	1	-	3.628154416197674	8.195726571770447	GACTATACCAATGTT
chr1	183634487	183634488	chr1:183634488:T:C	rs16861318	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	183638971	183638972	chr1:183638972:C:T	rs12024089	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	183817819	183817820	chr1:183817820:C:T	rs114423999	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr1	183817835	183817836	chr1:183817836:A:G	rs56346943	A	G	A	Sox1_MA0870.1	11	1	-	7.101739049041934	2.1463440632316	CACAGTACCATTGCT
chr1	183845098	183845099	chr1:183845099:G:C	rs11585293	G	C	G	Sox1_MA0870.1	18	0	+	0	0	.
chr1	184020180	184020181	chr1:184020181:A:G	rs16822334	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr1	184060858	184060859	chr1:184060859:C:T	rs17572231	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	184167465	184167466	chr1:184167466:T:C	rs4650655	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr1	184342437	184342438	chr1:184342438:T:C	rs4475710	T	C	C	Sox1_MA0870.1	5	1	+	5.341898272615349	-1.5612664860324101	GATAATATCATTGCC
chr1	184424167	184424168	chr1:184424168:A:G	rs12135850	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr1	184504793	184504794	chr1:184504794:T:A	rs187754093	T	A	T	Sox1_MA0870.1	33	0	-	0	0	.
chr1	184634860	184634861	chr1:184634861:A:C	chr1:184634861:A:C	A	C	A	Sox1_MA0870.1	28	0	+	0	0	.
chr1	184634864	184634865	chr1:184634865:A:G	chr1:184634865:A:G	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr1	184836141	184836142	chr1:184836142:A:T	rs116173697	A	T	A	Sox1_MA0870.1	9	1	+	10.797589675292866	3.8888348959776446	GACAATACCATTGGC
chr1	184953651	184953652	chr1:184953652:C:T	rs73054649	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	185017662	185017663	chr1:185017663:C:T	rs935070596	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr1	185260668	185260669	chr1:185260669:T:C	rs7539658	T	C	C	Sox1_MA0870.1	9	1	-	7.902553176022156	0.9937983967069351	TACAATTACATTCTT
chr1	186185635	186185636	chr1:186185636:T:C	rs10489751	T	C	T	Sox1_MA0870.1	9	1	-	7.062141664393952	0.15338688507873144	AACAATAACAGTCTC
chr1	186219813	186219814	chr1:186219814:G:A	rs1743666	G	A	G	Sox1_MA0870.1	13	1	-	4.460601174018102	6.638256471469097	AACAAGAATATTGCT
chr1	186220307	186220308	chr1:186220308:T:C	rs138077643	T	C	T	Sox1_MA0870.1	3	1	-	6.100701324208233	-0.7998883429889935	GACACTTTCCTTGTT
chr1	186839493	186839494	chr1:186839494:G:A	rs12720491	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	186903573	186903574	chr1:186903574:A:G	rs1033409	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr1	187032747	187032748	chr1:187032748:C:G	rs7552915	C	G	G	Sox1_MA0870.1	0	1	+	6.568834490512149	6.463008696260378	CACATTTTCATTGTG
chr1	187102493	187102494	chr1:187102494:A:G	rs10912004	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	187261804	187261805	chr1:187261805:A:G	rs75784818	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr1	187268031	187268032	chr1:187268032:G:A	rs330749	G	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr1	187281197	187281198	chr1:187281198:A:G	rs1496106	A	G	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	187490850	187490851	chr1:187490851:A:G	rs6671314	A	G	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	187573813	187573814	chr1:187573814:G:T	rs61812179	G	T	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	187879242	187879243	chr1:187879243:G:C	rs59642144	G	C	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	187928510	187928511	chr1:187928511:A:T	rs114365568	A	T	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	187977416	187977417	chr1:187977417:G:A	rs10912216	G	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr1	188466687	188466688	chr1:188466688:G:A	rs902007	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr1	188482409	188482410	chr1:188482410:G:C	rs75099637	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr1	188700330	188700331	chr1:188700331:T:C	rs7514277	T	C	C	Sox1_MA0870.1	5	1	+	4.348095117156978	-2.555069641490781	CTCAATATCTTTGTC
chr1	188712641	188712642	chr1:188712642:A:C	rs12070907	A	C	A	Sox1_MA0870.1	34	0	+	0	0	.
chr1	188886747	188886748	chr1:188886748:T:A	rs1445670	T	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	189253830	189253831	chr1:189253831:C:T	rs6700979	C	T	T	Sox1_MA0870.1	0	1	+	4.059569473159236	3.3571927160117565	CTCAATAACAGTATT
chr1	189938774	189938775	chr1:189938775:C:T	rs114611369	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr1	190285897	190285898	chr1:190285898:T:C	rs16832235	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	190792733	190792734	chr1:190792734:T:C	rs59362891	T	C	T	Sox1_MA0870.1	0	1	-	3.0654945133808726	1.7233713705741187	AACACTACCATGGGG
chr1	190809921	190809922	chr1:190809922:G:C	rs4240854	G	C	G	Sox1_MA0870.1	8	1	+	5.078672554184176	8.849175547084513	CACACTGAGAGTGTA
chr1	191022960	191022961	chr1:191022961:A:C	chr1:191022961:A:C	A	C	A	Sox1_MA0870.1	29	0	-	0	0	.
chr1	192291282	192291283	chr1:192291283:A:G	rs6428092	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	192436892	192436893	chr1:192436893:C:T	rs61822924	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	192628891	192628892	chr1:192628892:A:C	rs4631672	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	192724865	192724866	chr1:192724866:C:A	chr1:192724866:C:A	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	192861979	192861980	chr1:192861980:C:T	rs1231760	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr1	193123077	193123078	chr1:193123078:A:T	rs10158344	A	T	a	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	193469313	193469314	chr1:193469314:A:G	rs12033145	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	193567775	193567776	chr1:193567776:G:A	rs59246966	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	193741878	193741879	chr1:193741879:G:A	rs1326852	G	A	A	Sox1_MA0870.1	0	1	+	3.825400523092136	5.167523665898891	GGCCCTTTCATTGTT
chr1	193952417	193952418	chr1:193952418:C:T	rs606149	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr1	194338447	194338448	chr1:194338448:A:T	rs10801296	A	T	A	Sox1_MA0870.1	19	0	-	0	0	.
chr1	194808882	194808883	chr1:194808883:T:C	rs12138246	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr1	195600015	195600016	chr1:195600016:T:C	rs12406671	T	C	T	Sox1_MA0870.1	6	1	-	8.206990011719686	6.668383318578968	CACACTACAATTGTT
chr1	195643558	195643559	chr1:195643559:C:T	rs55866193	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	195865848	195865849	chr1:195865849:C:G	rs4587548	C	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	196088768	196088769	chr1:196088769:G:A	rs10922021	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	196130129	196130130	chr1:196130130:G:A	rs79254849	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr1	196401253	196401254	chr1:196401254:G:A	rs116815955	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr1	196594104	196594105	chr1:196594105:C:T	rs147209840	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	196639027	196639028	chr1:196639028:A:G	rs565088	A	G	G	Sox1_MA0870.1	3	1	+	3.8082948453097667	-3.0922948218874584	GTCACTACCATTATT
chr1	197101645	197101646	chr1:197101646:C:T	rs10922162	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	197190216	197190217	chr1:197190217:G:A	rs10922179	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr1	197372933	197372934	chr1:197372934:G:C	rs143068581	G	C	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr1	197399709	197399710	chr1:197399710:C:T	rs2759659	C	T	T	Sox1_MA0870.1	0	1	-	7.3379397858379685	8.68006292864472	GACACTTTGATTGTA
chr1	197399834	197399835	chr1:197399835:G:T	rs2821100	G	T	G	Sox1_MA0870.1	33	0	-	0	0	.
chr1	197487164	197487165	chr1:197487165:T:C	rs2160967	T	C	T	Sox1_MA0870.1	10	1	+	7.852296561165833	1.043599477029499	CAGAATAACATTGTG
chr1	197916170	197916171	chr1:197916171:G:A	rs74922488	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	198123423	198123424	chr1:198123424:C:T	rs113161864	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr1	198449651	198449652	chr1:198449652:T:C	rs16843099	T	C	C	Sox1_MA0870.1	26	0	-	0	0	.
chr1	199122700	199122701	chr1:199122701:T:C	rs80285374	T	C	T	Sox1_MA0870.1	3	1	-	4.739037533345261	-2.1615521338519654	AACACTACCATTTCC
chr1	199152201	199152202	chr1:199152202:G:A	rs3861924	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	199433847	199433848	chr1:199433848:C:A	rs5779967	C	A	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	199533590	199533591	chr1:199533591:C:A	rs149886534	C	A	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	199533592	199533593	chr1:199533593:C:A	rs144886467	C	A	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	199547048	199547049	chr1:199547049:G:C	rs79115527	G	C	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	199616789	199616790	chr1:199616790:G:A	rs17640181	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	199789888	199789889	chr1:199789889:G:A	rs4915183	G	A	G	Sox1_MA0870.1	7	1	-	4.692979533573138	4.681150481024765	GACAATACGAGTGAA
chr1	199844043	199844044	chr1:199844044:G:C	rs11806575	G	C	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	200021558	200021559	chr1:200021559:T:G	rs28698778	T	G	T	Sox1_MA0870.1	20	0	-	0	0	.
chr1	200076357	200076358	chr1:200076358:A:G	chr1:200076358:A:G	A	G	A	Sox1_MA0870.1	4	1	+	3.861237607318333	-2.916340646851856	GACAATGCCATTTGT
chr1	200076412	200076413	chr1:200076413:T:C	rs917529993	T	C	T	Sox1_MA0870.1	0	1	-	4.031407587285026	2.689284444478273	AACAATTTCATTTGG
chr1	200236697	200236698	chr1:200236698:C:T	rs1339576	C	T	T	Sox1_MA0870.1	2	1	+	4.550498565560946	-2.358256213754276	CACTAATCCATTGTT
chr1	200257269	200257270	chr1:200257270:T:A	rs12042253	T	A	A	Sox1_MA0870.1	17	0	-	0	0	.
chr1	200292128	200292129	chr1:200292129:C:G	rs956009	C	G	G	Sox1_MA0870.1	4	1	-	3.8036620937588044	8.624427413303776	AACAGAAGCATTGTG
chr1	200298479	200298480	chr1:200298480:A:G	rs10800693	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	200527633	200527634	chr1:200527634:A:G	rs113786736	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	200567923	200567924	chr1:200567924:T:C	rs4915204	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr1	200740718	200740719	chr1:200740719:G:A	rs138644030	G	A	G	Sox1_MA0870.1	2	1	-	3.7088289628927753	-3.1999258164224447	TACAATTTCTGTGTC
chr1	200834528	200834529	chr1:200834529:C:T	rs6659127	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	200857150	200857151	chr1:200857151:G:T	rs182832347	G	T	G	Sox1_MA0870.1	3	1	-	7.618135838405429	12.703900763443604	AACCAAAACATTGTT
chr1	200939476	200939477	chr1:200939477:A:C	rs61825289	A	C	-	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	200971051	200971052	chr1:200971052:G:A	rs3198583	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	201089384	201089385	chr1:201089385:C:T	rs35534614	C	T	C	Sox1_MA0870.1	7	1	+	5.938742699146882	5.926913646598509	CTCACTGCCATTGAT
chr1	201112814	201112815	chr1:201112815:C:T	rs2281845	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	201151601	201151602	chr1:201151602:C:A	rs2068152	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr1	201230266	201230267	chr1:201230267:G:A	chr1:201230267:G:A	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr1	201446252	201446253	chr1:201446253:A:G	rs59261306	A	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr1	201486410	201486411	chr1:201486411:A:T	rs16848752	A	T	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	201504349	201504350	chr1:201504350:T:C	rs9628676	T	C	C	Sox1_MA0870.1	9	1	-	4.217087784173802	-2.6916669951414183	TGCACTTGCAGTGTA
chr1	201534226	201534227	chr1:201534227:T:C	rs17469306	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	201735533	201735534	chr1:201735534:A:G	rs239981	A	G	A	Sox1_MA0870.1	5	1	+	5.291724367623415	3.4076896222861888	GACACAGGCATTGCT
chr1	201756992	201756993	chr1:201756993:G:A	rs137997283	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr1	201795176	201795177	chr1:201795177:A:T	rs115084174	A	T	A	Sox1_MA0870.1	13	1	+	4.0419915688932	7.387517595482359	TCCACTACCAGTGAT
chr1	201990752	201990753	chr1:201990753:C:T	rs12030995	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr1	202107623	202107624	chr1:202107624:A:G	rs150840990	A	G	A	Sox1_MA0870.1	7	1	-	3.7088289628927753	3.7206580154411486	TACAATTTCTGTGTC
chr1	202243881	202243882	chr1:202243882:G:A	rs143195836	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr1	202310580	202310581	chr1:202310581:A:G	rs705766	A	G	A	Sox1_MA0870.1	13	1	-	3.667456780490376	1.489801483039382	GCCACAGCCATTGTT
chr1	202342445	202342446	chr1:202342446:T:C	rs111749026	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr1	202544963	202544964	chr1:202544964:C:T	rs697456	C	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr1	202565260	202565261	chr1:202565261:T:C	rs3767397	T	C	A	Sox1_MA0870.1	3	1	-	4.119001824788042	-2.781587842409183	ACCAAAAGCAGTGCT
chr1	202964863	202964864	chr1:202964864:G:C	rs1418445	G	C	C	Sox1_MA0870.1	2	1	-	6.074526639473701	-0.8342281398415203	AACTATATTATTGTC
chr1	202964875	202964876	chr1:202964876:T:C	rs115460627	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	203096993	203096994	chr1:203096994:T:C	rs142473707	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	203127638	203127639	chr1:203127639:G:A	chr1:203127639:G:A	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr1	203148732	203148733	chr1:203148733:A:G	rs72739530	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr1	203188744	203188745	chr1:203188745:C:T	rs946261	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr1	203321117	203321118	chr1:203321118:T:C	rs10800910	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr1	203321158	203321159	chr1:203321159:G:A	rs1408142611	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	203328218	203328219	chr1:203328219:G:A	rs1172705570	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr1	203329017	203329018	chr1:203329018:T:C	rs184241917	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	203339899	203339900	chr1:203339900:G:A	rs12723309	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr1	203351775	203351776	chr1:203351776:A:T	rs11586935	A	T	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	203450594	203450595	chr1:203450595:A:G	rs79715636	A	G	A	Sox1_MA0870.1	10	1	-	12.852398894397174	6.04370181026084	AACACTTCCATTGTC
chr1	203502026	203502027	chr1:203502027:A:C	rs4481909	A	C	C	Sox1_MA0870.1	9	1	+	4.199734247194748	-2.7090205321204732	CTCTCTGACATTGTT
chr1	203557982	203557983	chr1:203557983:G:T	rs2821233	G	T	G	Sox1_MA0870.1	2	1	+	4.356876933399898	4.356876933399898	CAGACTGACATTGTG
chr1	203570556	203570557	chr1:203570557:C:T	rs1970960	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	203759088	203759089	chr1:203759089:T:C	rs56926353	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	203769707	203769708	chr1:203769708:C:T	rs78138223	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	204153742	204153743	chr1:204153743:A:T	rs4951312	A	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	204288890	204288891	chr1:204288891:T:C	rs4951059	T	C	T	Sox1_MA0870.1	4	1	-	4.930603342238284	-1.8469749119319046	AACAATAACTGTGGT
chr1	204396864	204396865	chr1:204396865:G:A	rs2942144	G	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	204396868	204396869	chr1:204396869:T:C	rs2942145	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	204475906	204475907	chr1:204475907:T:C	rs1553920	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	204638279	204638280	chr1:204638280:T:C	rs58651344	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	204638294	204638295	chr1:204638295:T:C	rs57886440	T	C	T	Sox1_MA0870.1	5	1	+	4.73979055598796	-2.1633742026597993	CACCATTTCATTGAA
chr1	204638312	204638313	chr1:204638313:C:T	rs11240231	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr1	204679708	204679709	chr1:204679709:C:T	rs72753892	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	204715605	204715606	chr1:204715606:C:T	rs72755813	C	T	c	Sox1_MA0870.1	7	1	-	5.450201064732163	5.84717939252867	AACAAATGCAGTGGT
chr1	204977404	204977405	chr1:204977405:C:T	rs530894806	C	T	T	Sox1_MA0870.1	14	1	+	5.104418855562685	6.615428260044089	GCCACTAGCATTGGC
chr1	205042530	205042531	chr1:205042531:T:C	rs4951158	T	C	T	Sox1_MA0870.1	4	1	-	4.266027541843472	-2.5115507123267173	TACAATTACATGGGT
chr1	205274260	205274261	chr1:205274261:C:T	rs74140218	C	T	T	Sox1_MA0870.1	14	1	-	7.553191732619181	7.377860495552137	AACTCTTACATTGTG
chr1	205446143	205446144	chr1:205446144:G:A	rs16855619	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr1	205478193	205478194	chr1:205478194:G:A	rs114285674	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr1	205860119	205860120	chr1:205860120:C:A	rs139573720	C	A	C	Sox1_MA0870.1	17	0	+	0	0	.
chr1	205921170	205921171	chr1:205921171:C:T	rs6674850	C	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	205947570	205947571	chr1:205947571:G:A	rs12047830	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	205947588	205947589	chr1:205947589:C:A	rs61815463	C	A	C	Sox1_MA0870.1	0	1	+	3.626613822187052	4.8629111707420325	CACAATGACAGAGCT
chr1	205963785	205963786	chr1:205963786:C:T	rs932060045	C	T	C	Sox1_MA0870.1	10	1	-	6.395495771424363	1.8279236158515895	AATAATAACAGTGCT
chr1	206108532	206108533	chr1:206108533:T:A	rs28418396	T	A	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	206712233	206712234	chr1:206712234:C:A	rs12127517	C	A	C	Sox1_MA0870.1	24	0	-	0	0	.
chr1	206890442	206890443	chr1:206890443:T:C	rs143827535	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	206955904	206955905	chr1:206955905:A:G	rs577206090	A	G	A	Sox1_MA0870.1	10	1	-	5.717142379296881	-1.091554704839452	AATACTTTCATTGTG
chr1	206955920	206955921	chr1:206955921:C:T	rs10863962	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	206979330	206979331	chr1:206979331:A:C	rs17352409	A	C	A	Sox1_MA0870.1	5	1	-	5.43326200783105	-1.4699027508167093	ATCACTTATATTGTA
chr1	207014854	207014855	chr1:207014855:G:A	rs75711169	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr1	207014861	207014862	chr1:207014862:G:A	rs2842721	G	A	A	Sox1_MA0870.1	10	1	-	4.6431596657485255	11.45185674988486	AACAATTTCACTGAC
chr1	207077966	207077967	chr1:207077967:C:T	rs564562430	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	207078059	207078060	chr1:207078060:T:C	rs17020241	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	207078067	207078068	chr1:207078068:T:A	rs74148966	T	A	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr1	207232481	207232482	chr1:207232482:A:T	rs11120485	A	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr1	207707895	207707896	chr1:207707896:G:A	rs181786864	G	A	.	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	207707910	207707911	chr1:207707911:G:A	rs1570565	G	A	.	Sox1_MA0870.1	8	1	+	6.553133784756392	4.430467123338515	TACAAAATGATTGTT
chr1	207944241	207944242	chr1:207944242:G:C	rs11576704	G	C	G	Sox1_MA0870.1	2	1	-	5.369719782475258	-1.5390349968399613	ATCAATATCATTTTG
chr1	207951858	207951859	chr1:207951859:G:C	rs11118958	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr1	208108657	208108658	chr1:208108658:T:A	rs7538533	T	A	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	208108698	208108699	chr1:208108699:T:G	rs72739502	T	G	T	Sox1_MA0870.1	27	0	+	0	0	.
chr1	208139520	208139521	chr1:208139521:T:C	rs78944353	T	C	T	Sox1_MA0870.1	13	1	+	4.356876933399898	2.179221635948904	CACACTGACCTTGTG
chr1	208166906	208166907	chr1:208166907:T:G	rs17259394	T	G	T	Sox1_MA0870.1	26	0	-	0	0	.
chr1	209621956	209621957	chr1:209621957:G:A	rs742257	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	209658244	209658245	chr1:209658245:T:C	rs742376	T	C	T	Sox1_MA0870.1	5	1	+	5.0182878741381485	-1.884876884509611	CTCAATAGAATTGTA
chr1	209671099	209671100	chr1:209671100:C:T	rs76986755	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr1	209721952	209721953	chr1:209721953:C:G	rs3766619	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	209840747	209840748	chr1:209840748:A:T	rs654470	A	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr1	209936616	209936617	chr1:209936617:A:T	rs2357212	A	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr1	210055543	210055544	chr1:210055544:C:T	rs2743889	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	210358093	210358094	chr1:210358094:A:G	rs1883655	A	G	g	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	210373966	210373967	chr1:210373967:G:A	rs147600875	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr1	210398699	210398700	chr1:210398700:G:T	rs2073038	G	T	G	Sox1_MA0870.1	2	1	+	5.768918727551503	5.768918727551503	AAGAATTCCATTGGT
chr1	210407505	210407506	chr1:210407506:C:T	rs10489382	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr1	210541880	210541881	chr1:210541881:C:T	rs59289142	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr1	210541889	210541890	chr1:210541890:G:A	rs12033957	G	A	A	Sox1_MA0870.1	14	1	-	7.6297120862593335	9.140721490740738	CACACTCACATTGTC
chr1	211069581	211069582	chr1:211069582:T:A	rs4951716	T	A	A	Sox1_MA0870.1	0	1	-	11.231572885315137	9.292898779612676	ATCAATTACAGTGTT
chr1	211357137	211357138	chr1:211357138:G:A	rs12752670	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr1	211447462	211447463	chr1:211447463:A:G	rs6656860	A	G	G	Sox1_MA0870.1	19	0	-	0	0	.
chr1	211472921	211472922	chr1:211472922:T:C	rs12126977	T	C	T	Sox1_MA0870.1	4	1	-	4.532283403391883	-2.2452948507783064	CACAATTACATGGCA
chr1	211478201	211478202	chr1:211478202:C:A	chr1:211478202:C:A	C	A	c	Sox1_MA0870.1	12	1	-	5.472473246927549	-1.4362815323876714	CACAATGTCATCGCA
chr1	211478201	211478202	chr1:211478202:C:T	rs61849030	C	T	c	Sox1_MA0870.1	12	1	-	5.472473246927549	-1.4362815323876714	CACAATGTCATCGCA
chr1	211724244	211724245	chr1:211724245:G:C	rs7525086	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	212035050	212035051	chr1:212035051:A:G	rs115064635	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr1	212231604	212231605	chr1:212231605:T:C	rs6668866	T	C	T	Sox1_MA0870.1	9	1	-	4.297704482735721	-2.6110502965795015	CACAATACCATAGAC
chr1	212352945	212352946	chr1:212352946:C:T	rs792442	C	T	T	Sox1_MA0870.1	2	1	+	3.9275523884079835	-2.981202390907237	TACCATTCCATTGGG
chr1	212560041	212560042	chr1:212560042:A:C	rs58752775	A	C	A	Sox1_MA0870.1	27	0	+	0	0	.
chr1	212578786	212578787	chr1:212578787:T:C	rs3122720	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	212688613	212688614	chr1:212688614:T:C	rs56059979	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr1	212691649	212691650	chr1:212691650:A:G	rs12068304	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	212862230	212862231	chr1:212862231:A:T	rs10779587	A	T	A	Sox1_MA0870.1	3	1	+	5.792604772603626	0.2783094665262934	TACATTTACAGTGTT
chr1	213126824	213126825	chr1:213126825:T:C	rs6540780	T	C	C	Sox1_MA0870.1	9	1	-	11.896836996667012	4.988082217351793	AACACTGCCATTGTA
chr1	213162562	213162563	chr1:213162563:G:A	rs79181819	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr1	213670456	213670457	chr1:213670457:T:C	rs12033150	T	C	T	Sox1_MA0870.1	3	1	-	5.541811142229839	-1.3587785249673883	AACACTTTCATTTTA
chr1	213852365	213852366	chr1:213852366:T:C	rs76628375	T	C	T	Sox1_MA0870.1	4	1	-	4.337461389968019	-2.440116864202171	CACAATAACATAGAA
chr1	213892167	213892168	chr1:213892168:A:G	rs701895	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr1	213918597	213918598	chr1:213918598:A:G	rs6686254	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	213986558	213986559	chr1:213986559:A:G	rs7548045	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	214030771	214030772	chr1:214030772:C:T	rs72753602	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	214303952	214303953	chr1:214303953:C:T	rs6687411	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr1	214303959	214303960	chr1:214303960:G:A	rs78905729	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr1	214331585	214331586	chr1:214331586:G:A	rs116424773	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr1	214438661	214438662	chr1:214438662:C:A	rs7529722	C	A	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr1	214683634	214683635	chr1:214683635:A:G	rs74447766	A	G	A	Sox1_MA0870.1	5	1	-	3.608600585506077	-3.2945641731416835	AACAATAGCAATTTT
chr1	214683637	214683638	chr1:214683638:G:T	rs75971130	G	T	G	Sox1_MA0870.1	2	1	-	3.608600585506077	-3.300154193809144	AACAATAGCAATTTT
chr1	214934311	214934312	chr1:214934312:T:C	rs73076282	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	214968226	214968227	chr1:214968227:C:T	rs10494988	C	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	215040328	215040329	chr1:215040329:A:G	rs12096956	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	215043514	215043515	chr1:215043515:A:G	rs79649803	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr1	215160735	215160736	chr1:215160736:G:T	rs2363565	G	T	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	215244866	215244867	chr1:215244867:T:C	rs3933352	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	215244877	215244878	chr1:215244878:A:T	rs12750276	A	T	A	Sox1_MA0870.1	9	1	+	4.916265231237237	-1.9924895480779843	CAAAATTACATTGCC
chr1	215606811	215606812	chr1:215606812:C:G	rs57861859	C	G	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	215780263	215780264	chr1:215780264:C:T	rs17025416	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr1	215793306	215793307	chr1:215793307:C:A	rs61828201	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	216045929	216045930	chr1:216045930:G:A	rs72744695	G	A	G	Sox1_MA0870.1	10	1	+	5.057175679487811	0.48960352391503814	TACAATTGGAGTGAT
chr1	216517944	216517945	chr1:216517945:A:G	rs6604626	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr1	216560827	216560828	chr1:216560828:C:T	rs569735598	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	216617379	216617380	chr1:216617380:C:T	chr1:216617380:C:T	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	216666771	216666772	chr1:216666772:G:T	rs4532915	G	T	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	216849219	216849220	chr1:216849220:C:A	rs116944357	C	A	C	Sox1_MA0870.1	8	1	+	5.7749668615675525	-0.11820279275066048	AACTAATTCATTGTT
chr1	216884404	216884405	chr1:216884405:C:T	rs929334696	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr1	216904465	216904466	chr1:216904466:G:A	rs114661314	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr1	216962255	216962256	chr1:216962256:A:G	rs2818783	A	G	G	Sox1_MA0870.1	1	1	+	3.7140800514143684	-0.38421060397877327	GACCCTGGCATTGCC
chr1	216984174	216984175	chr1:216984175:A:T	rs1416536	A	T	T	Sox1_MA0870.1	9	1	+	5.467492704499536	-1.441262074815683	AACAAGAGCATCGTT
chr1	217159977	217159978	chr1:217159978:G:A	rs1532717	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr1	217314597	217314598	chr1:217314598:C:T	rs11117853	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr1	217418557	217418558	chr1:217418558:C:T	rs265119	C	T	T	Sox1_MA0870.1	31	0	+	0	0	.
chr1	217577325	217577326	chr1:217577326:T:C	rs12142562	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	218585361	218585362	chr1:218585362:G:A	rs553146344	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr1	218585369	218585370	chr1:218585370:G:A	rs28581519	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr1	218809674	218809675	chr1:218809675:A:G	rs114359428	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr1	218979557	218979558	chr1:218979558:T:C	rs12562018	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	219304915	219304916	chr1:219304916:T:C	rs139749105	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	219308516	219308517	chr1:219308517:G:C	rs12566783	G	C	G	Sox1_MA0870.1	2	1	-	3.4813504112551175	-3.4274043680601043	AACAAGACCATTATT
chr1	219310986	219310987	chr1:219310987:G:A	rs10157397	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr1	219311021	219311022	chr1:219311022:G:A	rs75103322	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr1	219371724	219371725	chr1:219371725:T:C	rs74572593	T	C	T	Sox1_MA0870.1	4	1	-	8.939953013705919	2.1623747595357306	AACAATTGGATTGGT
chr1	219460314	219460315	chr1:219460315:G:A	rs6689100	G	A	A	Sox1_MA0870.1	2	1	-	7.386308578608389	0.4775537992931683	TACACTTGCATTGAG
chr1	219556081	219556082	chr1:219556082:C:T	rs183526420	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr1	219636004	219636005	chr1:219636005:T:C	rs10863470	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	219641170	219641171	chr1:219641171:A:G	rs11118372	A	G	A	Sox1_MA0870.1	4	1	+	4.78410094262928	-1.9934773115409081	CACAATCCCAGTGGT
chr1	219676381	219676382	chr1:219676382:A:G	rs10746390	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr1	219994049	219994050	chr1:219994050:G:C	rs10779393	G	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	220409763	220409764	chr1:220409764:A:C	rs1890461	A	C	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	220681534	220681535	chr1:220681535:C:A	rs116446175	C	A	c	Sox1_MA0870.1	7	1	+	5.2316674199225535	5.661428247458595	TAGAATTCCAGTGTT
chr1	220692764	220692765	chr1:220692765:C:T	rs6702417	C	T	t	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	220768093	220768094	chr1:220768094:C:T	rs139836771	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	220768101	220768102	chr1:220768102:G:A	rs11118598	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	220893760	220893761	chr1:220893761:T:G	rs2807863	T	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	220926280	220926281	chr1:220926281:C:A	rs17009060	C	A	C	Sox1_MA0870.1	21	0	+	0	0	.
chr1	220937487	220937488	chr1:220937488:G:C	rs17009078	G	C	G	Sox1_MA0870.1	12	1	+	7.149919804018353	0.24116502470313195	TAAAATAACATTGTG
chr1	221045438	221045439	chr1:221045439:T:G	rs965273358	T	G	T	Sox1_MA0870.1	6	1	+	5.965643905577618	5.400085928151201	AACAAATGCATTGGG
chr1	221161334	221161335	chr1:221161335:T:C	rs12140672	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	221164291	221164292	chr1:221164292:C:T	rs6657690	C	T	T	Sox1_MA0870.1	18	0	-	0	0	.
chr1	221218672	221218673	chr1:221218673:A:G	rs148953886	A	G	A	Sox1_MA0870.1	11	1	-	4.3868482890385	-0.5685466967718334	GAGACTTCCATTGTG
chr1	221241147	221241148	chr1:221241148:C:T	rs35316503	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr1	221503833	221503834	chr1:221503834:C:T	rs115312389	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	221658060	221658061	chr1:221658061:C:T	rs4504898	C	T	T	Sox1_MA0870.1	22	0	-	0	0	.
chr1	221713084	221713085	chr1:221713085:G:A	rs139504652	G	A	G	Sox1_MA0870.1	14	1	-	9.37107571791764	10.882085122399044	AACACTGACATTGAC
chr1	221713088	221713089	chr1:221713089:A:G	rs149306847	A	G	A	Sox1_MA0870.1	10	1	-	9.37107571791764	2.5623786337813055	AACACTGACATTGAC
chr1	221724964	221724965	chr1:221724965:C:T	rs12044821	C	T	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr1	221779615	221779616	chr1:221779616:G:T	rs11118858	G	T	G	Sox1_MA0870.1	7	1	+	6.5026182343806695	6.458006682092764	CACACTCGCAGTGTT
chr1	221929239	221929240	chr1:221929240:T:C	rs7554115	T	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr1	221981710	221981711	chr1:221981711:C:T	rs10863672	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr1	221981717	221981718	chr1:221981718:A:T	rs11118920	A	T	A	Sox1_MA0870.1	19	0	-	0	0	.
chr1	221991094	221991095	chr1:221991095:A:G	rs61823903	A	G	A	Sox1_MA0870.1	4	1	+	5.2044230757558605	-1.5731551784143285	ACCAATACCAATGTC
chr1	222042657	222042658	chr1:222042658:T:C	rs2790746	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	222090175	222090176	chr1:222090176:G:T	rs77587934	G	T	G	Sox1_MA0870.1	22	0	+	0	0	.
chr1	222247333	222247334	chr1:222247334:G:A	rs158725	G	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	222331924	222331925	chr1:222331925:C:A	rs17506586	C	A	C	Sox1_MA0870.1	29	0	+	0	0	.
chr1	222371371	222371372	chr1:222371372:A:G	rs79403508	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr1	222415963	222415964	chr1:222415964:T:C	rs116124097	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr1	222465010	222465011	chr1:222465011:A:G	rs1454343479	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr1	222465020	222465021	chr1:222465021:G:A	rs1038783020	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr1	222465051	222465052	chr1:222465052:C:T	rs1023018380	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	222540278	222540279	chr1:222540279:C:T	rs3748665	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr1	222588428	222588429	chr1:222588429:A:G	rs2270705	A	G	A	Sox1_MA0870.1	5	1	-	5.743067883131655	-1.1600968755161052	AATAATAACATTGAG
chr1	222816417	222816418	chr1:222816418:T:C	rs61838109	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr1	222956711	222956712	chr1:222956712:T:C	rs61837491	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr1	223040315	223040316	chr1:223040316:A:C	rs1416690	A	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr1	223712092	223712093	chr1:223712093:G:A	rs184081435	G	A	G	Sox1_MA0870.1	12	1	+	5.054133137556677	-1.854621641758543	GACAATATCAGCGCC
chr1	223721561	223721562	chr1:223721562:A:C	rs17557623	A	C	A	Sox1_MA0870.1	19	0	+	0	0	.
chr1	223766377	223766378	chr1:223766378:A:C	rs17599	A	C	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	223771795	223771796	chr1:223771796:C:G	rs16842168	C	G	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr1	224051068	224051069	chr1:224051069:T:C	rs188868317	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr1	224051114	224051115	chr1:224051115:C:G	rs79746984	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	224212472	224212473	chr1:224212473:A:G	rs6682292	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	224256789	224256790	chr1:224256790:G:A	rs183000837	G	A	g	Sox1_MA0870.1	21	0	+	0	0	.
chr1	224498879	224498880	chr1:224498880:C:T	rs56081029	C	T	C	Sox1_MA0870.1	13	1	+	11.273390686156873	13.451045983607868	GACACTTACATTGCT
chr1	224622448	224622449	chr1:224622449:G:A	rs1025647847	G	A	g	Sox1_MA0870.1	18	0	+	0	0	.
chr1	224632457	224632458	chr1:224632458:T:C	rs112690485	T	C	T	Sox1_MA0870.1	4	1	-	4.501002435503789	-2.2765758186664	GACAATAACAATGAG
chr1	224632476	224632477	chr1:224632477:T:C	rs6664616	T	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	224698365	224698366	chr1:224698366:G:T	rs2897161	G	T	G	Sox1_MA0870.1	25	0	-	0	0	.
chr1	224766303	224766304	chr1:224766304:T:C	rs974151776	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	224799117	224799118	chr1:224799118:C:T	rs2574875	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr1	225423048	225423049	chr1:225423049:G:A	rs6686405	G	A	A	Sox1_MA0870.1	7	1	-	4.832001937156933	4.82017288460856	GACACTTCGAGTGCT
chr1	225441625	225441626	chr1:225441626:C:T	rs148380668	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	225711165	225711166	chr1:225711166:T:C	rs12031529	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	225824374	225824375	chr1:225824375:G:A	rs12753757	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr1	226070020	226070021	chr1:226070021:A:G	rs4653440	A	G	a	Sox1_MA0870.1	-11	0	-	0	0	.
chr1	226101283	226101284	chr1:226101284:G:T	rs1009834308	G	T	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	226101300	226101301	chr1:226101301:T:C	rs59361210	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	226308271	226308272	chr1:226308272:A:T	rs185301171	A	T	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	226559627	226559628	chr1:226559628:G:A	rs6679966	G	A	g	Sox1_MA0870.1	16	0	-	0	0	.
chr1	226589672	226589673	chr1:226589673:T:C	rs602660	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	226724494	226724495	chr1:226724495:C:A	rs3768411	C	A	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	226778670	226778671	chr1:226778671:A:G	rs12071493	A	G	G	Sox1_MA0870.1	9	1	+	3.2004308402045423	-3.708323939110678	AAGACTGCCATTGCC
chr1	226778682	226778683	chr1:226778683:G:A	rs150304911	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr1	226859718	226859719	chr1:226859719:A:T	rs78256943	A	T	A	Sox1_MA0870.1	0	1	+	10.021185954795628	8.082511849093168	AACAAAATCAGTGTT
chr1	226859749	226859750	chr1:226859750:G:A	rs1295651	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr1	226874427	226874428	chr1:226874428:C:A	rs2793461	C	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr1	226874455	226874456	chr1:226874456:A:G	rs6675452	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr1	227131351	227131352	chr1:227131352:T:C	rs74143306	T	C	T	Sox1_MA0870.1	3	1	-	5.686480389696631	-1.2141092775005944	AACACTTGCAATGTA
chr1	227131370	227131371	chr1:227131371:A:G	rs74475302	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	227266429	227266430	chr1:227266430:G:A	rs1464076	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr1	227754675	227754676	chr1:227754676:C:T	rs141540241	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr1	227776697	227776698	chr1:227776698:T:C	rs1111046	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	227808362	227808363	chr1:227808363:A:G	rs6702713	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr1	227944114	227944115	chr1:227944115:A:G	rs564944804	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr1	228192017	228192018	chr1:228192018:A:G	rs79829758	A	G	A	Sox1_MA0870.1	9	1	+	5.856069425975345	-1.0526853533398761	GTCACTGACAGTGTC
chr1	228227892	228227893	chr1:228227893:G:A	rs947087	G	A	G	Sox1_MA0870.1	10	1	+	4.927954481048632	0.36038232547585813	AACCATAGCAGTGAG
chr1	228515441	228515442	chr1:228515442:G:A	rs1019384456	G	A	G	Sox1_MA0870.1	6	1	-	3.653193024262921	8.069343311381822	GACAATCCCATTTTT
chr1	228821572	228821573	chr1:228821573:G:T	rs241341	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	228901515	228901516	chr1:228901516:A:C	rs6659427	A	C	A	Sox1_MA0870.1	9	1	+	7.768678540965186	0.859923761649966	TACACTGTCATTGCA
chr1	228941107	228941108	chr1:228941108:A:T	rs74397729	A	T	A	Sox1_MA0870.1	6	1	+	4.373382137176214	3.400333421461913	AGAAATATCATTGTA
chr1	228965081	228965082	chr1:228965082:C:T	rs519791	C	T	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	229101096	229101097	chr1:229101097:C:T	rs185355198	C	T	T	Sox1_MA0870.1	10	1	-	6.001965995557102	1.4343938399843292	GGCAATAGCAGTGGT
chr1	229101097	229101098	chr1:229101098:T:C	rs190204259	T	C	T	Sox1_MA0870.1	9	1	-	6.001965995557102	-0.9067887837581187	GGCAATAGCAGTGGT
chr1	229105643	229105644	chr1:229105644:G:A	rs77752553	G	A	G	Sox1_MA0870.1	8	1	-	3.1453848963396958	-1.0362246502975854	GACAATAGCAGTACC
chr1	229134732	229134733	chr1:229134733:T:C	rs9701817	T	C	G	Sox1_MA0870.1	20	0	-	0	0	.
chr1	229172103	229172104	chr1:229172104:T:G	rs530525253	T	G	T	Sox1_MA0870.1	14	1	-	9.46765220501721	9.857656125320952	AACAATGGCAGTGCA
chr1	229318341	229318342	chr1:229318342:G:A	rs530898406	G	A	G	Sox1_MA0870.1	14	1	-	5.4402288284209614	6.951238232902366	AACAATTTGAGTGAC
chr1	229472418	229472419	chr1:229472419:G:A	rs4925489	G	A	g	Sox1_MA0870.1	-6	0	-	0	0	.
chr1	229481010	229481011	chr1:229481011:T:C	rs1444727	T	C	T	Sox1_MA0870.1	3	1	-	4.429005384703066	-2.4715842824941605	CCCATTAACATTGTC
chr1	230078045	230078046	chr1:230078046:G:A	rs7534687	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr1	230104702	230104703	chr1:230104703:T:A	rs10864691	T	A	T	Sox1_MA0870.1	11	1	+	3.814522110251833	-3.0882105766049985	GACATTTGCAGTGCT
chr1	230104721	230104722	chr1:230104722:G:A	rs10864692	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr1	230105366	230105367	chr1:230105367:G:C	rs868287	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	230105376	230105377	chr1:230105377:A:C	rs868288	A	C	C	Sox1_MA0870.1	6	1	+	7.61385259648741	2.224653593654207	CACCATATCATTGAT
chr1	230144765	230144766	chr1:230144766:T:C	rs2180078	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr1	230144774	230144775	chr1:230144775:T:C	rs6686680	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr1	230209550	230209551	chr1:230209551:C:G	rs12058500	C	G	C	Sox1_MA0870.1	7	1	+	5.180807567853519	5.213590067593053	TACAAATCTATTGTT
chr1	230527087	230527088	chr1:230527088:G:A	rs1101458	G	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	230578871	230578872	chr1:230578872:G:T	rs1752185	G	T	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr1	230702368	230702369	chr1:230702369:A:G	rs11568046	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	230749262	230749263	chr1:230749263:C:T	rs6541331	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr1	231140831	231140832	chr1:231140832:A:G	rs6669723	A	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr1	231192570	231192571	chr1:231192571:C:T	rs74143581	C	T	C	Sox1_MA0870.1	7	1	-	3.2512017837244116	3.6481801115209187	GGGAATAGCATTGTG
chr1	231337949	231337950	chr1:231337950:A:G	rs111398285	A	G	A	Sox1_MA0870.1	5	1	-	2.9400604063241933	-3.963104352323568	ACCGATGGCATTGCT
chr1	231388010	231388011	chr1:231388011:G:A	rs2808592	G	A	A	Sox1_MA0870.1	12	1	+	12.103143324723433	5.194388545408214	ATCAATATCATTGTA
chr1	231417672	231417673	chr1:231417673:G:A	rs2095935	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	231846524	231846525	chr1:231846525:G:A	rs11588799	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr1	232140459	232140460	chr1:232140460:G:A	rs12078605	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr1	232182368	232182369	chr1:232182369:T:C	rs914272	T	C	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr1	232383509	232383510	chr1:232383510:G:T	rs17176514	G	T	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr1	232472239	232472240	chr1:232472240:C:T	rs2225041	C	T	C	Sox1_MA0870.1	7	1	-	6.596706427307412	6.993684755103921	GACAACTGCATTGTC
chr1	232501341	232501342	chr1:232501342:C:T	rs7534024	C	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr1	232555959	232555960	chr1:232555960:G:A	rs140725963	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	232634418	232634419	chr1:232634419:T:C	rs6680176	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr1	232705467	232705468	chr1:232705468:T:G	rs9424585	T	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr1	233282172	233282173	chr1:233282173:A:C	chr1:233282173:A:C	A	C	A	Sox1_MA0870.1	10	1	-	3.718670236222362	1.4775453076588017	AGCATTTCCATTGTG
chr1	233359821	233359822	chr1:233359822:T:C	rs10752755	T	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr1	233359822	233359823	chr1:233359823:G:A	rs1001343401	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	233411970	233411971	chr1:233411971:G:C	rs12128164	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr1	233503746	233503747	chr1:233503747:T:C	rs114818996	T	C	T	Sox1_MA0870.1	5	1	+	2.5091199083203084	-4.39404485032745	AACACTGGCAGAGCT
chr1	233503775	233503776	chr1:233503776:G:A	rs1418199	G	A	A	Sox1_MA0870.1	34	0	+	0	0	.
chr1	234227142	234227143	chr1:234227143:T:C	rs114558569	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr1	234317061	234317062	chr1:234317062:T:A	rs61824466	T	A	T	Sox1_MA0870.1	18	0	+	0	0	.
chr1	234428456	234428457	chr1:234428457:C:T	rs10797547	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	234428458	234428459	chr1:234428459:G:C	rs10797548	G	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	234500043	234500044	chr1:234500044:A:C	rs2175591	A	C	A	Sox1_MA0870.1	11	1	-	7.2366179467360645	0.33388525987923245	GACAAGAACAGTGTT
chr1	234522208	234522209	chr1:234522209:T:C	rs558712	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr1	234606378	234606379	chr1:234606379:T:C	rs918895178	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	234744142	234744143	chr1:234744143:A:G	rs3009958	A	G	G	Sox1_MA0870.1	6	1	+	3.575818085766544	2.0372113926258244	AACAATACCCATGTT
chr1	234845107	234845108	chr1:234845108:G:A	rs758772776	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr1	234917961	234917962	chr1:234917962:T:C	rs16844196	T	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	234917989	234917990	chr1:234917990:C:T	rs61837267	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr1	234940346	234940347	chr1:234940347:C:T	rs61837293	C	T	C	Sox1_MA0870.1	12	1	-	3.9394982722955	-2.9692565070197205	GACAAAGACAGTGGT
chr1	234961492	234961493	chr1:234961493:C:T	rs61837322	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	234961993	234961994	chr1:234961994:G:C	rs115441532	G	C	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr1	235011610	235011611	chr1:235011611:C:T	rs369274057	C	T	C	Sox1_MA0870.1	0	1	+	2.535713561534367	1.833336804386887	CACACTTCCATGGCC
chr1	235020509	235020510	chr1:235020510:G:A	rs28679445	G	A	g	Sox1_MA0870.1	12	1	+	4.500504539097603	-2.4082502402176176	AACAATAACAGGGCA
chr1	235048139	235048140	chr1:235048140:C:T	rs528244004	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	235048381	235048382	chr1:235048382:C:T	rs75713901	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr1	235048385	235048386	chr1:235048386:G:A	rs543302145	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr1	235063046	235063047	chr1:235063047:C:T	rs36139305	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr1	235469150	235469151	chr1:235469151:A:C	chr1:235469151:A:C	A	C	A	Sox1_MA0870.1	1	1	+	6.773411290711527	3.0042709058670276	TACCCTGCCATTGTT
chr1	235517163	235517164	chr1:235517164:A:G	rs4659540	A	G	G	Sox1_MA0870.1	10	1	-	3.888046180401201	-2.9206509037351323	CACACAGTCATTGGT
chr1	235877761	235877762	chr1:235877762:C:T	rs6673218	C	T	T	Sox1_MA0870.1	8	1	+	7.877830307175249	3.6962207605379658	GACAATTGCATCGCT
chr1	235913393	235913394	chr1:235913394:A:T	rs10927030	A	T	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	236213338	236213339	chr1:236213339:A:G	rs12089792	A	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr1	236228753	236228754	chr1:236228754:T:C	rs146213055	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr1	236399577	236399578	chr1:236399578:G:T	rs10925116	G	T	G	Sox1_MA0870.1	4	1	-	4.652322818552248	6.6091357531774655	ACCACCATCATTGTT
chr1	236507632	236507633	chr1:236507633:T:A	rs2067953	T	A	T	Sox1_MA0870.1	18	0	+	0	0	.
chr1	236562075	236562076	chr1:236562076:A:C	rs766124	A	C	A	Sox1_MA0870.1	30	0	+	0	0	.
chr1	236673528	236673529	chr1:236673529:A:G	rs74146210	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr1	236688834	236688835	chr1:236688835:G:A	rs79277266	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	236688849	236688850	chr1:236688850:A:G	rs74727372	A	G	G	Sox1_MA0870.1	6	1	+	8.445841064200415	6.9072343710596975	TAAAATACCATTGTT
chr1	236692334	236692335	chr1:236692335:A:T	rs35643176	A	T	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr1	236734206	236734207	chr1:236734207:C:T	rs12569148	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr1	237109619	237109620	chr1:237109620:C:T	rs17669728	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr1	237310175	237310176	chr1:237310176:G:C	rs11582513	G	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr1	237324377	237324378	chr1:237324378:A:C	rs1362840	A	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	237391152	237391153	chr1:237391153:G:A	rs12082285	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr1	237618066	237618067	chr1:237618067:G:A	rs140691407	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr1	237626943	237626944	chr1:237626944:G:A	rs615869	G	A	G	Sox1_MA0870.1	4	1	-	3.7399558162484405	-1.0808095032965315	CACACTGTCATTTTA
chr1	237682630	237682631	chr1:237682631:A:G	rs12735668	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr1	237714323	237714324	chr1:237714324:T:A	rs1329945675	T	A	T	Sox1_MA0870.1	6	1	-	7.99664259769205	7.0235938819777495	AACTATATGATTGTT
chr1	237748923	237748924	chr1:237748924:A:G	rs2685291	A	G	A	Sox1_MA0870.1	9	1	+	8.246721719151545	1.3379669398363232	AACATTTACATTGTG
chr1	237759752	237759753	chr1:237759753:C:T	rs2253831	C	T	T	Sox1_MA0870.1	27	0	+	0	0	.
chr1	238180416	238180417	chr1:238180417:A:G	rs61832270	A	G	A	Sox1_MA0870.1	1	1	+	5.157243774829759	1.0589531194366186	AAAAATGCCATTGCC
chr1	238469439	238469440	chr1:238469440:G:A	rs1342076	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr1	238952457	238952458	chr1:238952458:T:C	rs13374113	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr1	239128655	239128656	chr1:239128656:C:T	rs115121522	C	T	C	Sox1_MA0870.1	8	1	+	7.191735466584087	3.0101259199468045	AACAAATGCAGTGTA
chr1	239213160	239213161	chr1:239213161:A:G	rs539626261	A	G	A	Sox1_MA0870.1	4	1	+	6.134182207027434	-0.6433960471427534	ATCAATTCCATTTTT
chr1	239508172	239508173	chr1:239508173:T:C	rs6675823	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr1	239675483	239675484	chr1:239675484:T:C	rs73109156	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr1	239868050	239868051	chr1:239868051:G:A	rs589215	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr1	239961963	239961964	chr1:239961964:C:A	rs12408878	C	A	c	Sox1_MA0870.1	-1	0	+	0	0	.
chr1	240100251	240100252	chr1:240100252:C:G	rs11589947	C	G	C	Sox1_MA0870.1	24	0	-	0	0	.
chr1	240194777	240194778	chr1:240194778:A:G	rs1020710	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr1	240288933	240288934	chr1:240288934:C:T	rs60909204	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	240290327	240290328	chr1:240290328:G:A	rs10754697	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr1	240539759	240539760	chr1:240539760:C:T	rs80285190	C	T	C	Sox1_MA0870.1	12	1	-	11.705688048815535	4.796933269500315	TACAATAACATTGCA
chr1	240769204	240769205	chr1:240769205:G:A	rs545506989	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr1	241747084	241747085	chr1:241747085:T:C	rs6662598	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr1	241807216	241807217	chr1:241807217:G:A	rs4658754	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr1	241840236	241840237	chr1:241840237:T:C	rs16842196	T	C	T	Sox1_MA0870.1	4	1	-	5.004456302999326	-1.7731219511708622	AACAATATCATTAGG
chr1	241842041	241842042	chr1:241842042:G:T	rs17391502	G	T	G	Sox1_MA0870.1	12	1	+	6.1746894849101945	-0.7340652944050264	GTCTATTTCATTGTT
chr1	242239252	242239253	chr1:242239253:A:G	rs753748	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr1	242242543	242242544	chr1:242242544:G:A	rs383373	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr1	242473963	242473964	chr1:242473964:T:G	rs10926749	T	G	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr1	242652032	242652033	chr1:242652033:G:A	rs146940674	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr1	242890243	242890244	chr1:242890244:C:T	rs2491825	C	T	c	Sox1_MA0870.1	27	0	+	0	0	.
chr1	243338280	243338281	chr1:243338281:A:G	rs2783963	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr1	243484194	243484195	chr1:243484195:A:G	rs10927026	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr1	243505966	243505967	chr1:243505967:A:G	rs137944665	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	243714076	243714077	chr1:243714077:A:G	rs894301954	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr1	243939512	243939513	chr1:243939513:C:G	rs148557837	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr1	244022552	244022553	chr1:244022553:A:G	rs79495622	A	G	A	Sox1_MA0870.1	9	1	+	5.981461206055217	-0.9272935732600046	AACACTGGGATTGCA
chr1	244299306	244299307	chr1:244299307:G:T	rs372904952	G	T	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr1	244347134	244347135	chr1:244347135:G:A	rs900895	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr1	244352075	244352076	chr1:244352076:C:T	rs10803199	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr1	244513709	244513710	chr1:244513710:A:G	rs3003289	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr1	244615665	244615666	chr1:244615666:C:T	rs12138786	C	T	C	Sox1_MA0870.1	2	1	+	4.098357398147681	-2.81039738116754	GACCAAAACATTGCT
chr1	244648173	244648174	chr1:244648174:G:C	chr1:244648174:G:C	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	244797004	244797005	chr1:244797005:C:T	chr1:244797005:C:T	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr1	244815768	244815769	chr1:244815769:A:C	rs67064196	A	C	C	Sox1_MA0870.1	3	1	+	4.00749718512191	-1.0782677399162655	AACAATGACAATGGG
chr1	244920836	244920837	chr1:244920837:T:C	rs72769488	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr1	244969489	244969490	chr1:244969490:G:T	rs116246511	G	T	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	245029169	245029170	chr1:245029170:T:C	rs1979568	T	C	T	Sox1_MA0870.1	4	1	-	5.431955830756183	-1.3456224234140044	CACAATGCCATTCCT
chr1	245293287	245293288	chr1:245293288:T:C	rs4658744	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr1	245417089	245417090	chr1:245417090:A:T	rs1069218	A	T	A	Sox1_MA0870.1	13	1	-	3.6844628322899093	0.3389368057007509	GACACAGCCAGTGTC
chr1	245539981	245539982	chr1:245539982:C:T	rs7536825	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr1	245585693	245585694	chr1:245585694:T:C	rs71636576	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr1	245675152	245675153	chr1:245675153:G:A	rs35166037	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr1	245772264	245772265	chr1:245772265:T:C	rs192840231	T	C	t	Sox1_MA0870.1	9	1	-	5.32096877940406	-1.5877859999111612	AAAAATTTCATTGCA
chr1	245823500	245823501	chr1:245823501:G:A	rs77641507	G	A	G	Sox1_MA0870.1	0	1	+	6.222610192281543	7.564733335088297	GCCAAATGCATTGTT
chr1	245823510	245823511	chr1:245823511:T:G	rs79579132	T	G	T	Sox1_MA0870.1	10	1	+	6.222610192281543	3.9814852637179827	GCCAAATGCATTGTT
chr1	245823512	245823513	chr1:245823513:G:A	rs12030297	G	A	G	Sox1_MA0870.1	12	1	+	6.222610192281543	-0.686144587033677	GCCAAATGCATTGTT
chr1	245860760	245860761	chr1:245860761:T:C	rs548116232	T	C	T	Sox1_MA0870.1	9	1	-	4.17917446392407	-2.7295803153911504	TACAAAATCAGTGCG
chr1	245997309	245997310	chr1:245997310:A:G	rs36107675	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr1	246002016	246002017	chr1:246002017:C:G	rs148335745	C	G	C	Sox1_MA0870.1	10	1	-	4.8293446447436015	0.26177248917082874	TGCAATTACAGTGGT
chr1	246091673	246091674	chr1:246091674:T:C	rs74569312	T	C	T	Sox1_MA0870.1	7	1	-	5.758797625493804	5.361819297697297	TACACAGACATTGTC
chr1	246219467	246219468	chr1:246219468:A:G	rs6426285	A	G	A	Sox1_MA0870.1	9	1	+	4.09858764010885	-2.810167139206371	GCCACTTCCATTGGC
chr1	246262130	246262131	chr1:246262131:G:T	rs55886501	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr1	246304602	246304603	chr1:246304603:A:C	rs1197627	A	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr1	246402782	246402783	chr1:246402783:C:T	rs75949547	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr1	246503693	246503694	chr1:246503694:G:A	rs10924758	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr1	246597600	246597601	chr1:246597601:T:C	rs376344022	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr1	246794709	246794710	chr1:246794710:C:T	rs72764660	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr1	247419523	247419524	chr1:247419524:T:A	rs12139843	T	A	t	Sox1_MA0870.1	32	0	+	0	0	.
chr1	247452878	247452879	chr1:247452879:A:T	rs12406394	A	T	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr1	247506604	247506605	chr1:247506605:T:C	rs80257886	T	C	T	Sox1_MA0870.1	9	1	-	3.381574917994678	-3.5271798613205427	AACACCTCCATTGCA
chr1	247532124	247532125	chr1:247532125:C:G	rs34220133	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr1	247639946	247639947	chr1:247639947:G:C	rs28702816	G	C	G	Sox1_MA0870.1	26	0	-	0	0	.
chr1	247639960	247639961	chr1:247639961:C:T	rs28571581	C	T	t	Sox1_MA0870.1	12	1	-	7.9242869486166665	1.0155321693014465	AACAATATGAGTGAT
chr1	248858434	248858435	chr1:248858435:A:G	rs548744358	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr1	248889006	248889007	chr1:248889007:A:G	rs12752429	A	G	G	Sox1_MA0870.1	13	1	-	5.217124067042144	3.0394687695911498	ATCAAAGCCAGTGTT
chr10	302905	302906	chr10:302906:T:C	rs2380150	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr10	453548	453549	chr10:453549:G:A	rs11252513	G	A	G	Sox1_MA0870.1	13	1	-	6.163658635471153	8.341313932922146	ACCACTTTCAGTGCT
chr10	481998	481999	chr10:481999:C:A	rs55973534	C	A	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	566511	566512	chr10:566512:G:C	rs115116850	G	C	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	873091	873092	chr10:873092:G:C	rs34885925	G	C	G	Sox1_MA0870.1	19	0	-	0	0	.
chr10	1050828	1050829	chr10:1050829:C:T	rs182049360	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	1057540	1057541	chr10:1057541:T:C	rs148346775	T	C	T	Sox1_MA0870.1	4	1	-	6.475370824643794	-0.3022074295263957	AACAATATCATGGCG
chr10	1057649	1057650	chr10:1057650:A:G	rs35657988	A	G	A	Sox1_MA0870.1	4	1	+	4.831710821195373	-1.9458674329748136	AACAATAATAATGTA
chr10	1109806	1109807	chr10:1109807:T:C	rs36051896	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	1181656	1181657	chr10:1181657:A:G	rs10794729	A	G	G	Sox1_MA0870.1	11	1	-	9.088593909720814	4.133198923910479	AAGAATAACATTGTG
chr10	1196139	1196140	chr10:1196140:G:A	rs138746409	G	A	g	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	1266658	1266659	chr10:1266659:A:G	rs79188332	A	G	A	Sox1_MA0870.1	9	1	+	4.303702810851706	-2.605051968463514	TACAATACCAGTCTA
chr10	1290572	1290573	chr10:1290573:A:G	rs4880811	A	G	A	Sox1_MA0870.1	10	1	-	4.757100063488984	-2.0515970206473493	ACCTCTAACATTGTG
chr10	1299066	1299067	chr10:1299067:T:A	rs2387644	T	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr10	1533457	1533458	chr10:1533458:A:G	rs2676733	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr10	1582580	1582581	chr10:1582581:T:C	rs938695	T	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr10	1583098	1583099	chr10:1583099:C:T	rs10794765	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	1754699	1754700	chr10:1754700:G:C	rs191539354	G	C	G	Sox1_MA0870.1	17	0	+	0	0	.
chr10	1754700	1754701	chr10:1754701:C:T	rs183798758	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr10	1754716	1754717	chr10:1754717:A:G	rs916295334	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr10	2123158	2123159	chr10:2123159:T:C	rs12569383	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	2207544	2207545	chr10:2207545:G:A	rs7073545	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr10	2221940	2221941	chr10:2221941:G:A	rs12411758	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	2227738	2227739	chr10:2227739:C:T	rs7919624	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	2364081	2364082	chr10:2364082:C:A	rs826471	C	A	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	2384664	2384665	chr10:2384665:C:T	rs826497	C	T	c	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	2426762	2426763	chr10:2426763:A:G	rs10794910	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	2593107	2593108	chr10:2593108:A:C	rs72773007	A	C	A	Sox1_MA0870.1	24	0	+	0	0	.
chr10	2632265	2632266	chr10:2632266:C:T	rs6601818	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr10	2660063	2660064	chr10:2660064:A:G	rs148144898	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr10	2660086	2660087	chr10:2660087:A:T	rs2152005	A	T	A	Sox1_MA0870.1	4	1	-	3.204352580537509	9.981930834707695	GACATTGTCAGTGCT
chr10	2913463	2913464	chr10:2913464:G:A	rs11251564	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	2915093	2915094	chr10:2915094:A:G	rs7091014	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr10	3072041	3072042	chr10:3072042:A:G	rs11598339	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr10	3081240	3081241	chr10:3081241:T:C	rs882849	T	C	t	Sox1_MA0870.1	22	0	-	0	0	.
chr10	3307834	3307835	chr10:3307835:C:T	rs17291583	C	T	C	Sox1_MA0870.1	1	1	+	3.956296674652506	4.448152812335865	CCCAATATCAATGTC
chr10	3415416	3415417	chr10:3415417:A:G	rs115417779	A	G	A	Sox1_MA0870.1	3	1	+	4.381816112781051	-2.518773554416175	AACACTAGCATTCCA
chr10	3451904	3451905	chr10:3451905:C:T	rs10904044	C	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr10	3667378	3667379	chr10:3667379:C:A	rs115675950	C	A	C	Sox1_MA0870.1	31	0	+	0	0	.
chr10	3735262	3735263	chr10:3735263:C:T	rs114429489	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	3764935	3764936	chr10:3764936:T:C	rs7086418	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	3764936	3764937	chr10:3764937:G:T	rs11597804	G	T	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	3776993	3776994	chr10:3776994:T:C	rs79041010	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	3873866	3873867	chr10:3873867:T:C	chr10:3873867:T:C	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr10	3914333	3914334	chr10:3914334:G:T	chr10:3914334:G:T	G	T	G	Sox1_MA0870.1	34	0	+	0	0	.
chr10	4234961	4234962	chr10:4234962:G:A	rs74114685	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr10	4241642	4241643	chr10:4241643:G:A	rs12246351	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr10	4246917	4246918	chr10:4246918:A:T	rs10751964	A	T	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr10	4247026	4247027	chr10:4247027:T:A	rs115615743	T	A	T	Sox1_MA0870.1	6	1	+	5.958119003574332	6.9311677192886325	TACGATTTCATTGTC
chr10	4389711	4389712	chr10:4389712:G:T	rs72766495	G	T	G	Sox1_MA0870.1	12	1	+	7.08565025966889	0.1768954803536692	GACCATGCCAGTGTT
chr10	4472251	4472252	chr10:4472252:G:A	rs10904264	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr10	4533614	4533615	chr10:4533615:C:T	rs313478	C	T	C	Sox1_MA0870.1	8	1	+	6.494981529751108	2.313371983113825	CACATTTACAGTGTT
chr10	4649777	4649778	chr10:4649778:A:G	rs11252639	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr10	5009339	5009340	chr10:5009340:G:A	rs1937863	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	5009378	5009379	chr10:5009379:C:A	rs113767262	C	A	C	Sox1_MA0870.1	20	0	+	0	0	.
chr10	5116847	5116848	chr10:5116848:A:T	rs1892405	A	T	A	Sox1_MA0870.1	29	0	-	0	0	.
chr10	5116850	5116851	chr10:5116851:C:T	rs1892404	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr10	5285712	5285713	chr10:5285713:A:G	rs9423591	A	G	A	Sox1_MA0870.1	9	1	+	4.822097268414082	-2.0866575109011376	AAGAAATACATTGTT
chr10	5292383	5292384	chr10:5292384:C:A	rs9423594	C	A	c	Sox1_MA0870.1	27	0	-	0	0	.
chr10	5442246	5442247	chr10:5442247:C:G	rs544855459	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr10	5447222	5447223	chr10:5447223:G:T	rs60426135	G	T	G	Sox1_MA0870.1	24	0	-	0	0	.
chr10	5501382	5501383	chr10:5501383:T:C	rs12412562	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr10	5564685	5564686	chr10:5564686:T:C	rs4880734	T	C	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	5588167	5588168	chr10:5588168:T:C	rs4075309	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr10	5667187	5667188	chr10:5667188:A:T	rs3814200	A	T	T	Sox1_MA0870.1	16	0	+	0	0	.
chr10	5823293	5823294	chr10:5823294:T:C	rs72772400	T	C	T	Sox1_MA0870.1	9	1	-	4.168803189767205	-2.739951589548016	GACACTGGCAATGTC
chr10	5882258	5882259	chr10:5882259:G:A	rs603780	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr10	5960610	5960611	chr10:5960611:C:G	rs775991308	C	G	C	Sox1_MA0870.1	21	0	+	0	0	.
chr10	6044328	6044329	chr10:6044329:G:T	rs942201	G	T	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	6056860	6056861	chr10:6056861:T:C	rs706779	T	C	T	Sox1_MA0870.1	13	1	+	7.939136182158908	5.761480884707914	GACAAGGACATTGTT
chr10	6059165	6059166	chr10:6059166:A:T	rs3118469	A	T	A	Sox1_MA0870.1	22	0	+	0	0	.
chr10	6437193	6437194	chr10:6437194:C:T	rs944715	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr10	6437227	6437228	chr10:6437228:G:A	rs12254073	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	6491914	6491915	chr10:6491915:A:G	rs3815975	A	G	A	Sox1_MA0870.1	11	1	-	12.277240978958837	7.321845993148504	CACAATGCCAGTGTT
chr10	6491937	6491938	chr10:6491938:C:T	rs3815974	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr10	6564323	6564324	chr10:6564324:A:G	rs4748152	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr10	6669228	6669229	chr10:6669229:C:G	rs11813112	C	G	C	Sox1_MA0870.1	24	0	-	0	0	.
chr10	6766744	6766745	chr10:6766745:G:C	chr10:6766745:G:C	G	C	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	6766750	6766751	chr10:6766751:G:A	rs4747303	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	6786654	6786655	chr10:6786655:C:T	rs745995225	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr10	6928229	6928230	chr10:6928230:G:A	rs2387749	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr10	7075499	7075500	chr10:7075500:G:C	rs11254983	G	C	G	Sox1_MA0870.1	29	0	+	0	0	.
chr10	7090962	7090963	chr10:7090963:G:A	rs1192347530	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr10	7136160	7136161	chr10:7136161:C:T	rs181829098	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	7183814	7183815	chr10:7183815:G:A	rs6602231	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	7442376	7442377	chr10:7442377:C:G	rs12245350	C	G	C	Sox1_MA0870.1	3	1	+	4.1866747481494935	2.371850005990443	CTCCCTGTCATTGTT
chr10	7494344	7494345	chr10:7494345:C:T	rs2388139	C	T	T	Sox1_MA0870.1	28	0	-	0	0	.
chr10	7598739	7598740	chr10:7598740:T:A	rs11814502	T	A	T	Sox1_MA0870.1	5	1	+	8.268956374907777	3.2498263615972425	AACACTTTTATTGTA
chr10	8060209	8060210	chr10:8060210:G:A	chr10:8060210:G:A	G	A	G	Sox1_MA0870.1	7	1	+	8.233302336266387	8.630280664062894	GACAGTTGCATTGTT
chr10	8086347	8086348	chr10:8086348:T:A	rs794659	T	A	T	Sox1_MA0870.1	9	1	-	10.562150128100514	3.6533953487852937	CCCAATACCATTGTG
chr10	8105684	8105685	chr10:8105685:G:A	rs873461	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	8152787	8152788	chr10:8152788:T:C	rs10905291	T	C	T	Sox1_MA0870.1	6	1	-	5.066208968758355	3.527602275617636	CACCATATAATTGTT
chr10	8181554	8181555	chr10:8181555:A:G	rs2789623	A	G	G	Sox1_MA0870.1	11	1	-	3.188601787656169	-1.766793198154165	AACACTGTCTTTGCC
chr10	8183543	8183544	chr10:8183544:C:T	rs1329124136	C	T	C	Sox1_MA0870.1	8	1	-	11.468469663658096	9.345803002240219	AACAATTAGATTGTC
chr10	8405184	8405185	chr10:8405185:G:C	rs1338055	G	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr10	8405186	8405187	chr10:8405187:C:A	rs2065991	C	A	C	Sox1_MA0870.1	16	0	-	0	0	.
chr10	8420475	8420476	chr10:8420476:T:C	rs2993385	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr10	8460877	8460878	chr10:8460878:G:T	rs17143715	G	T	G	Sox1_MA0870.1	2	1	-	8.725256388780684	1.8165016094654627	AACAATGAGATTGCC
chr10	8649691	8649692	chr10:8649692:G:A	rs73633625	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr10	8689291	8689292	chr10:8689292:C:T	rs7912831	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr10	8738520	8738521	chr10:8738521:C:T	rs7071899	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr10	8921306	8921307	chr10:8921307:C:T	rs2388898	C	T	C	Sox1_MA0870.1	12	1	-	3.609308115682436	-3.299446663632784	CACCATAGCAGTGGC
chr10	8921335	8921336	chr10:8921336:C:T	rs2388899	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	8979217	8979218	chr10:8979218:T:C	rs706773	T	C	T	Sox1_MA0870.1	5	1	+	3.7203339059957505	-3.182830852652008	AGCAATTGCAATGTG
chr10	9110741	9110742	chr10:9110742:T:C	rs17364530	T	C	T	Sox1_MA0870.1	5	1	+	10.366653990774015	3.463489232126258	GACAATGGCATTGCA
chr10	9505603	9505604	chr10:9505604:C:T	rs10437546	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr10	9898809	9898810	chr10:9898810:G:A	rs11256374	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr10	9898812	9898813	chr10:9898813:G:A	rs11256375	G	A	G	Sox1_MA0870.1	13	1	-	7.018865803129813	9.196521100580807	CACAATCACATTGCA
chr10	10045344	10045345	chr10:10045345:G:T	rs79249198	G	T	G	Sox1_MA0870.1	29	0	-	0	0	.
chr10	10094202	10094203	chr10:10094203:C:T	rs12264789	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	10094689	10094690	chr10:10094690:T:G	rs12355401	T	G	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	10094702	10094703	chr10:10094703:C:T	rs7090967	C	T	C	Sox1_MA0870.1	11	1	+	5.425837503544782	10.381232489355117	AACAATCTCATCGTC
chr10	10111359	10111360	chr10:10111360:G:A	rs61837794	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr10	10111384	10111385	chr10:10111385:G:T	rs36076407	G	T	G	Sox1_MA0870.1	7	1	-	4.623611801081567	5.053372628617609	GAAAATACCAGTGCT
chr10	10293872	10293873	chr10:10293873:T:C	rs79335400	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	10490209	10490210	chr10:10490210:A:C	rs2488163	A	C	C	Sox1_MA0870.1	33	0	-	0	0	.
chr10	10515998	10515999	chr10:10515999:C:G	rs1535865	C	G	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	10527005	10527006	chr10:10527006:C:T	rs9651524	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	10562072	10562073	chr10:10562073:A:G	rs72787661	A	G	A	Sox1_MA0870.1	11	1	-	4.412622376901811	-0.5427726089085226	ACCAACAGCAGTGTT
chr10	10587450	10587451	chr10:10587451:A:G	rs11256693	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	10709912	10709913	chr10:10709913:C:T	rs11256791	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr10	10818202	10818203	chr10:10818203:T:C	rs117597795	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	11089174	11089175	chr10:11089175:G:A	rs1291815	G	A	G	Sox1_MA0870.1	1	1	-	3.5696316072952037	4.061487744978562	CCCAATGACAGTGGG
chr10	11157307	11157308	chr10:11157308:G:A	rs73575699	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	11179796	11179797	chr10:11179797:T:G	rs79144548	T	G	T	Sox1_MA0870.1	10	1	+	7.548825649810422	5.307700721246861	AACAACTGCATTGTA
chr10	11190615	11190616	chr10:11190616:T:A	rs622981	T	A	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	11617325	11617326	chr10:11617326:T:C	rs11257197	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr10	11631543	11631544	chr10:11631544:G:A	rs12415252	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	11829702	11829703	chr10:11829703:C:T	rs1268582735	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr10	12242397	12242398	chr10:12242398:A:T	rs117334547	A	T	A	Sox1_MA0870.1	17	0	+	0	0	.
chr10	12482637	12482638	chr10:12482638:G:A	rs17491614	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	12498800	12498801	chr10:12498801:C:T	rs11257832	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr10	12509331	12509332	chr10:12509332:A:G	rs11595316	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr10	12747403	12747404	chr10:12747404:T:C	rs59225986	T	C	c	Sox1_MA0870.1	16	0	-	0	0	.
chr10	12748128	12748129	chr10:12748129:A:G	rs17152194	A	G	a	Sox1_MA0870.1	11	1	-	7.505574848225647	2.5501798624153134	TAAAATTGCATTGTT
chr10	12869724	12869725	chr10:12869725:G:C	rs12412014	G	C	G	Sox1_MA0870.1	23	0	+	0	0	.
chr10	12980943	12980944	chr10:12980944:T:C	chr10:12980944:T:C	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr10	13099832	13099833	chr10:13099833:G:C	rs1259650733	G	C	G	Sox1_MA0870.1	31	0	-	0	0	.
chr10	13226720	13226721	chr10:13226721:C:G	rs75313861	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr10	13241806	13241807	chr10:13241807:A:G	rs17152990	A	G	A	Sox1_MA0870.1	10	1	-	9.624246461628081	2.8155493774917466	GTCAATGCCATTGTC
chr10	13665236	13665237	chr10:13665237:G:A	rs4531355	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr10	13740604	13740605	chr10:13740605:G:A	rs6602679	G	A	A	Sox1_MA0870.1	2	1	-	3.51413291099465	-3.39462186832057	AACAACAGCATTCTT
chr10	13908780	13908781	chr10:13908781:C:T	rs2698132	C	T	C	Sox1_MA0870.1	13	1	+	3.5825252456939034	5.760180543144898	ATCAGTAGCATTGCC
chr10	13939347	13939348	chr10:13939348:C:T	rs112865127	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	13978109	13978110	chr10:13978110:T:C	rs1031753	T	C	T	Sox1_MA0870.1	5	1	+	5.69461800750379	-1.2085467511439703	TCCACTAGCAGTGTG
chr10	14012345	14012346	chr10:14012346:C:T	rs2457839	C	T	C	Sox1_MA0870.1	12	1	-	4.459605812477971	-2.449148966837249	AACATTTTCATTGAG
chr10	14262846	14262847	chr10:14262847:C:T	rs111466869	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	14356225	14356226	chr10:14356226:C:T	rs7083480	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr10	14409500	14409501	chr10:14409501:T:C	rs10906669	T	C	T	Sox1_MA0870.1	4	1	-	4.780230011672308	-1.9973482424978788	GTCAATTTCTTTGTT
chr10	14413386	14413387	chr10:14413387:A:T	rs11259072	A	T	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	14497580	14497581	chr10:14497581:C:T	rs149907312	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	14507840	14507841	chr10:14507841:A:G	rs76429327	A	G	A	Sox1_MA0870.1	0	1	+	3.041463314216265	1.6993401714095118	AACACCTCCAGTGCT
chr10	14539353	14539354	chr10:14539354:C:T	rs7083733	C	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	14539365	14539366	chr10:14539366:C:G	rs7083741	C	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	14609017	14609018	chr10:14609018:T:C	rs112704532	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr10	14652675	14652676	chr10:14652676:T:G	rs1887466	T	G	T	Sox1_MA0870.1	10	1	-	4.638387739773669	4.638387739773669	AGCAATAACAATGCT
chr10	14660694	14660695	chr10:14660695:A:T	rs78275091	A	T	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	14684505	14684506	chr10:14684506:G:A	rs114562619	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr10	14702127	14702128	chr10:14702128:A:G	rs1023104480	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	14859929	14859930	chr10:14859930:C:G	rs9787671	C	G	C	Sox1_MA0870.1	2	1	+	6.828118726036756	-0.08063605327846468	CACAGTTGCATTGTC
chr10	14945440	14945441	chr10:14945441:A:G	rs7920514	A	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr10	14995605	14995606	chr10:14995606:G:A	rs4333918	G	A	-	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	14995671	14995672	chr10:14995672:G:T	rs4333919	G	T	-	Sox1_MA0870.1	8	1	-	11.913211082314547	6.020041427996334	AACAATATCATTGGG
chr10	15013362	15013363	chr10:15013363:T:C	rs11259435	T	C	-	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	15084964	15084965	chr10:15084965:A:G	rs7896927	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr10	15149147	15149148	chr10:15149148:C:T	rs61844188	C	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr10	15169381	15169382	chr10:15169382:A:T	rs890923545	A	T	A	Sox1_MA0870.1	24	0	+	0	0	.
chr10	15195216	15195217	chr10:15195217:G:A	rs10906855	G	A	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr10	15201008	15201009	chr10:15201009:A:C	rs3935155	A	C	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	15322162	15322163	chr10:15322163:T:C	rs1878624	T	C	C	Sox1_MA0870.1	10	1	+	5.0162853555477	-1.7924117285886343	AAAAATACCATTGGG
chr10	15324806	15324807	chr10:15324807:T:A	rs374976522	T	A	T	Sox1_MA0870.1	19	0	+	0	0	.
chr10	15689316	15689317	chr10:15689317:G:A	rs9333077	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr10	15789755	15789756	chr10:15789756:C:T	rs7923731	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	16283878	16283879	chr10:16283879:T:G	rs3802557	T	G	T	Sox1_MA0870.1	5	1	+	7.33430055050958	0.43113579186182094	AACATTTGCAGTGTT
chr10	16466043	16466044	chr10:16466044:G:A	rs6602118	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr10	16466052	16466053	chr10:16466053:A:G	rs6602119	A	G	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	16787519	16787520	chr10:16787520:C:T	rs114879232	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	16962559	16962560	chr10:16962560:G:T	rs1687714	G	T	T	Sox1_MA0870.1	31	0	-	0	0	.
chr10	16969263	16969264	chr10:16969264:T:C	rs11593686	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	16969298	16969299	chr10:16969299:C:T	rs1828624	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr10	16974337	16974338	chr10:16974338:C:T	rs11254308	C	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr10	17059498	17059499	chr10:17059499:C:A	rs151235084	C	A	C	Sox1_MA0870.1	22	0	+	0	0	.
chr10	17093122	17093123	chr10:17093123:C:T	rs2356824	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr10	17171483	17171484	chr10:17171484:T:G	rs72775072	T	G	T	Sox1_MA0870.1	27	0	-	0	0	.
chr10	17435507	17435508	chr10:17435508:A:G	rs4748376	A	G	g	Sox1_MA0870.1	9	1	+	7.852296561165833	0.9435417818506114	CATAATAACATTGTG
chr10	17527590	17527591	chr10:17527591:G:A	rs17141287	G	A	G	Sox1_MA0870.1	13	1	-	3.475869863602631	5.653525161053626	AACAATTTCAGGGCC
chr10	17586161	17586162	chr10:17586162:T:C	rs12771283	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr10	17646185	17646186	chr10:17646186:G:C	chr10:17646186:G:C	G	C	G	Sox1_MA0870.1	25	0	-	0	0	.
chr10	17673462	17673463	chr10:17673463:C:T	rs116343068	C	T	C	Sox1_MA0870.1	14	1	-	9.882683883734689	9.707352646667644	AACACTGTCATTGCG
chr10	17758946	17758947	chr10:17758947:C:A	rs2461170	C	A	A	Sox1_MA0870.1	2	1	+	3.9141918067595234	-2.9945629725556997	CTCCATGCCAGTGTT
chr10	17981278	17981279	chr10:17981279:G:A	rs11011850	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr10	18060297	18060298	chr10:18060298:T:G	rs80269453	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr10	18737377	18737378	chr10:18737378:G:A	rs16917736	G	A	G	Sox1_MA0870.1	6	1	+	5.9621897054662405	7.500796398606958	CACAAAGACAGTGTG
chr10	19022858	19022859	chr10:19022859:A:G	rs7091246	A	G	G	Sox1_MA0870.1	5	1	-	4.097504118842708	-2.8056606398050525	AACAATAGCTGTGCA
chr10	19187626	19187627	chr10:19187627:C:T	rs7077017	C	T	T	Sox1_MA0870.1	10	1	-	5.301298031023087	0.7337258754503139	CACACAGCCAGTGTT
chr10	19518890	19518891	chr10:19518891:C:T	rs7905333	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr10	19647960	19647961	chr10:19647961:A:T	rs74837136	A	T	A	Sox1_MA0870.1	34	0	-	0	0	.
chr10	19719320	19719321	chr10:19719321:G:C	rs186052799	G	C	G	Sox1_MA0870.1	25	0	-	0	0	.
chr10	19719343	19719344	chr10:19719344:G:T	rs143219780	G	T	G	Sox1_MA0870.1	2	1	-	5.972416697477028	-0.936338081838192	CACAAGTGCAGTGTT
chr10	19774119	19774120	chr10:19774120:A:C	rs58072866	A	C	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	19826593	19826594	chr10:19826594:G:C	rs117484187	G	C	G	Sox1_MA0870.1	21	0	-	0	0	.
chr10	19930068	19930069	chr10:19930069:C:T	rs12763380	C	T	C	Sox1_MA0870.1	13	1	+	5.283307998486747	7.460963295937741	TAGAATTTCATTGCT
chr10	20147151	20147152	chr10:20147152:A:C	rs11011827	A	C	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	20270620	20270621	chr10:20270621:T:C	rs67657819	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr10	20330822	20330823	chr10:20330823:G:A	rs534989503	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	20429056	20429057	chr10:20429057:A:T	rs56394272	A	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	20494783	20494784	chr10:20494784:G:A	rs10828064	G	A	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	20524005	20524006	chr10:20524006:C:G	rs7912427	C	G	C	Sox1_MA0870.1	25	0	+	0	0	.
chr10	20635612	20635613	chr10:20635613:C:T	rs7081310	C	T	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr10	20769986	20769987	chr10:20769987:T:C	rs1467643	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr10	20806547	20806548	chr10:20806548:A:G	rs72785566	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr10	21281966	21281967	chr10:21281967:C:T	rs12252629	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr10	21368572	21368573	chr10:21368573:A:T	rs73592524	A	T	A	Sox1_MA0870.1	15	0	-	0	0	.
chr10	21399771	21399772	chr10:21399772:C:A	rs114703865	C	A	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	21456932	21456933	chr10:21456933:C:G	rs11594201	C	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr10	21538866	21538867	chr10:21538867:G:A	rs1802669	G	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	22347140	22347141	chr10:22347141:T:C	rs80180421	T	C	.	Sox1_MA0870.1	29	0	+	0	0	.
chr10	22638942	22638943	chr10:22638943:A:G	rs1539628	A	G	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	22657031	22657032	chr10:22657032:G:A	rs1171496	G	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	22657944	22657945	chr10:22657945:C:T	rs17526135	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	22682533	22682534	chr10:22682534:T:G	rs11013095	T	G	T	Sox1_MA0870.1	23	0	+	0	0	.
chr10	22722941	22722942	chr10:22722942:G:A	rs34032638	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	23051622	23051623	chr10:23051623:C:T	rs77721462	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr10	23482297	23482298	chr10:23482298:A:G	rs72771426	A	G	A	Sox1_MA0870.1	10	1	-	3.8514688808009816	-2.9572282033353527	CACACCACCATTGAT
chr10	23524525	23524526	chr10:23524526:C:T	rs7898730	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	23608711	23608712	chr10:23608712:T:C	rs78095884	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr10	24256264	24256265	chr10:24256265:T:C	rs2280171	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr10	24352258	24352259	chr10:24352259:A:C	rs77127033	A	C	A	Sox1_MA0870.1	22	0	+	0	0	.
chr10	24463714	24463715	chr10:24463715:A:G	rs16924790	A	G	A	Sox1_MA0870.1	9	1	+	6.721805922907356	-0.18694885640786474	CACAATACTATTGGC
chr10	24494463	24494464	chr10:24494464:C:A	rs3818672	C	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr10	24644059	24644060	chr10:24644060:T:C	rs773407288	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	24774034	24774035	chr10:24774035:C:G	rs73606562	C	G	c	Sox1_MA0870.1	26	0	-	0	0	.
chr10	25219831	25219832	chr10:25219832:T:C	rs2807237	T	C	C	Sox1_MA0870.1	13	1	+	5.410497328187091	3.2328420307360974	CAAAATAGGATTGTT
chr10	25707218	25707219	chr10:25707219:G:A	rs77936140	G	A	G	Sox1_MA0870.1	12	1	+	3.57865573641791	-3.3300990428973107	CCCACTGGCATTGAA
chr10	25963629	25963630	chr10:25963630:T:C	rs2176939	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr10	26087163	26087164	chr10:26087164:A:G	rs7906251	A	G	G	Sox1_MA0870.1	5	1	-	4.3772567956667565	-2.525907962981003	AACATTTTCATTGGC
chr10	26315917	26315918	chr10:26315918:C:T	rs74126440	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr10	26331626	26331627	chr10:26331627:A:G	rs35960238	A	G	A	Sox1_MA0870.1	11	1	-	6.168329986596674	1.2129350007863389	GAAAATTCCATTGTA
chr10	26358254	26358255	chr10:26358255:G:A	rs3006765	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	26454994	26454995	chr10:26454995:T:C	rs4747563	T	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	26492458	26492459	chr10:26492459:G:A	rs1775246	G	A	A	Sox1_MA0870.1	12	1	+	6.262326728300073	-0.6464280510151474	CAGAATTTCATTGTA
chr10	26586136	26586137	chr10:26586137:T:C	rs4749165	T	C	t	Sox1_MA0870.1	1	1	-	8.787143995389348	4.688853339996207	GACAAAAGCATTGCT
chr10	26684836	26684837	chr10:26684837:A:G	rs146111209	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	27030177	27030178	chr10:27030178:T:C	rs146808306	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	27440815	27440816	chr10:27440816:A:G	rs11015783	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	27505059	27505060	chr10:27505060:C:T	rs191392441	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr10	27611685	27611686	chr10:27611686:G:A	rs10741138	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr10	27614329	27614330	chr10:27614330:T:C	rs10764725	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	27701192	27701193	chr10:27701193:G:A	rs2492917	G	A	A	Sox1_MA0870.1	23	0	-	0	0	.
chr10	27837150	27837151	chr10:27837151:C:T	rs4749264	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr10	27862005	27862006	chr10:27862006:A:C	rs11006747	A	C	C	Sox1_MA0870.1	7	1	-	4.313872476602027	4.358484028889934	AATCATTTCATTGTT
chr10	27959594	27959595	chr10:27959595:G:A	rs75593214	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr10	28172269	28172270	chr10:28172270:T:C	rs7092972	T	C	t	Sox1_MA0870.1	10	1	+	11.730852047729302	4.922154963592969	AACAAATACATTGTT
chr10	28320531	28320532	chr10:28320532:G:A	rs786393	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	28334552	28334553	chr10:28334553:G:T	rs191523151	G	T	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	28344398	28344399	chr10:28344399:G:A	rs182929288	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	28344679	28344680	chr10:28344680:G:A	rs1840876	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr10	28344683	28344684	chr10:28344684:T:C	rs1840875	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr10	28394389	28394390	chr10:28394390:G:T	rs181732839	G	T	G	Sox1_MA0870.1	21	0	-	0	0	.
chr10	28623482	28623483	chr10:28623483:A:G	rs72809652	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr10	28735197	28735198	chr10:28735198:G:C	rs1014606	G	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	28735200	28735201	chr10:28735201:G:A	rs1014607	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	28974968	28974969	chr10:28974969:G:C	rs11594011	G	C	G	Sox1_MA0870.1	2	1	-	8.215406244452495	1.306651465137275	AACAATCCCATTGCC
chr10	28995039	28995040	chr10:28995040:A:G	rs76921075	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr10	29026223	29026224	chr10:29026224:T:C	rs74128130	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	29026227	29026228	chr10:29026228:G:A	rs112289517	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr10	29026231	29026232	chr10:29026232:C:A	rs12779321	C	A	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr10	29026232	29026233	chr10:29026233:G:A	rs74128131	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	29410444	29410445	chr10:29410445:A:G	rs193292627	A	G	A	Sox1_MA0870.1	10	1	-	3.3924654746585112	-3.416231609477822	CTCAACTCCATTGTC
chr10	29515986	29515987	chr10:29515987:C:T	rs11007637	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	29525967	29525968	chr10:29525968:T:C	rs72802785	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr10	29784468	29784469	chr10:29784469:C:G	rs537649509	C	G	C	Sox1_MA0870.1	34	0	-	0	0	.
chr10	29812595	29812596	chr10:29812596:T:C	rs35679939	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr10	29875181	29875182	chr10:29875182:G:A	rs150693919	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr10	29951257	29951258	chr10:29951258:C:G	rs1774209	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr10	29951276	29951277	chr10:29951277:T:C	rs1756750	T	C	T	Sox1_MA0870.1	3	1	-	5.761606344454098	-1.1389833227431279	AACAATTGCATAGCC
chr10	29964320	29964321	chr10:29964321:A:T	rs35495115	A	T	A	Sox1_MA0870.1	29	0	-	0	0	.
chr10	30034459	30034460	chr10:30034460:G:A	rs11595639	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	30034480	30034481	chr10:30034481:C:T	rs11007869	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr10	30089933	30089934	chr10:30089934:A:G	rs7078436	A	G	G	Sox1_MA0870.1	9	1	+	8.101996601003284	1.1932418216880643	CCCAATTACATTGGT
chr10	30207749	30207750	chr10:30207750:G:A	rs9787541	G	A	A	Sox1_MA0870.1	7	1	-	4.136020690027671	4.1241916374792975	GACACTGCCACTGTC
chr10	30241204	30241205	chr10:30241205:A:T	rs2948891	A	T	A	Sox1_MA0870.1	28	0	+	0	0	.
chr10	30383264	30383265	chr10:30383265:T:A	rs2480284	T	A	.	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	30442481	30442482	chr10:30442482:A:G	rs7071698	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr10	30500861	30500862	chr10:30500862:C:A	rs3124198	C	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr10	30542524	30542525	chr10:30542525:G:A	rs906231	G	A	g	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	30558077	30558078	chr10:30558078:T:C	rs4749568	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr10	30558094	30558095	chr10:30558095:A:C	rs145311269	A	C	A	Sox1_MA0870.1	11	1	-	7.486348071409384	0.583615384552552	GTCAATGACATTGCA
chr10	30668900	30668901	chr10:30668901:C:T	rs3124184	C	T	-	Sox1_MA0870.1	13	1	-	4.257909323070098	4.554931023118012	AAGAATTCCATTGGC
chr10	30712175	30712176	chr10:30712176:T:C	rs10763822	T	C	-	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	30869661	30869662	chr10:30869662:A:G	rs10763843	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	30999079	30999080	chr10:30999080:C:G	rs546989348	C	G	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	31123308	31123309	chr10:31123309:G:A	rs75997056	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr10	31137168	31137169	chr10:31137169:C:T	rs899993054	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr10	31137169	31137170	chr10:31137170:G:A	rs59723319	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr10	31679204	31679205	chr10:31679205:A:G	rs796129	A	G	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	31864871	31864872	chr10:31864872:T:C	rs12241716	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr10	31878746	31878747	chr10:31878747:T:C	rs2799025	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	32219356	32219357	chr10:32219357:G:A	rs57926720	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	32219389	32219390	chr10:32219390:T:C	rs116485846	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr10	32222548	32222549	chr10:32222549:T:G	rs2769223	T	G	G	Sox1_MA0870.1	4	1	-	4.072921355206585	2.1161084205813685	CACAAAAACAGTGGC
chr10	32240780	32240781	chr10:32240781:C:T	rs2806129	C	T	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	32672665	32672666	chr10:32672666:G:T	rs16933594	G	T	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	32954720	32954721	chr10:32954721:A:G	rs75885532	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr10	32963165	32963166	chr10:32963166:T:G	rs77677848	T	G	T	Sox1_MA0870.1	13	1	+	5.28736168608424	1.6448139594471676	AACCAAACCATTGTA
chr10	33104201	33104202	chr10:33104202:T:G	rs2666246	T	G	T	Sox1_MA0870.1	10	1	+	2.885814824624741	0.6446898960611804	CACAATGACCTTGGC
chr10	33113364	33113365	chr10:33113365:A:G	rs2666252	A	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr10	33117558	33117559	chr10:33117559:C:T	rs149424212	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr10	33233328	33233329	chr10:33233329:C:T	rs77828306	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr10	33233924	33233925	chr10:33233925:T:C	rs75318989	T	C	T	Sox1_MA0870.1	9	1	-	5.133097537350789	-1.7756572419644314	TAGAATAGCATTGAT
chr10	33235399	33235400	chr10:33235400:G:A	rs112982326	G	A	G	Sox1_MA0870.1	12	1	+	8.539394327173992	1.6306395478587725	GTCACTACCATTGCT
chr10	33441926	33441927	chr10:33441927:T:C	rs2804904	T	C	C	Sox1_MA0870.1	14	1	-	4.363361917021199	4.538693154088243	CCCAATATGAGTGTA
chr10	33459756	33459757	chr10:33459757:C:T	rs945589	C	T	T	Sox1_MA0870.1	19	0	+	0	0	.
chr10	33509817	33509818	chr10:33509818:A:C	rs2605506	A	C	A	Sox1_MA0870.1	31	0	+	0	0	.
chr10	33509820	33509821	chr10:33509821:T:G	chr10:33509821:T:G	T	G	T	Sox1_MA0870.1	34	0	+	0	0	.
chr10	33661595	33661596	chr10:33661596:G:A	rs117937609	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr10	33735861	33735862	chr10:33735862:T:A	rs73267245	T	A	T	Sox1_MA0870.1	11	1	+	8.905685523597468	2.0029528367406346	GTCACTAACAGTGTT
chr10	33739206	33739207	chr10:33739207:A:T	rs59724621	A	T	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	33794722	33794723	chr10:33794723:G:A	rs2777518	G	A	g	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	33831945	33831946	chr10:33831946:A:G	rs2812663	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	33871312	33871313	chr10:33871313:C:T	rs16934885	C	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	34003793	34003794	chr10:34003794:T:G	rs224703	T	G	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr10	34090964	34090965	chr10:34090965:C:T	rs17535788	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr10	34148394	34148395	chr10:34148395:G:A	rs138408552	G	A	G	Sox1_MA0870.1	11	1	-	4.857649587222712	9.813044573033045	AACAATGTCAGCGCC
chr10	34238458	34238459	chr10:34238459:C:A	rs1111267	C	A	C	Sox1_MA0870.1	18	0	-	0	0	.
chr10	34320583	34320584	chr10:34320584:T:C	rs76930001	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr10	34407489	34407490	chr10:34407490:T:C	rs11009774	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr10	34968957	34968958	chr10:34968958:G:A	rs4007288	G	A	.	Sox1_MA0870.1	22	0	+	0	0	.
chr10	35011694	35011695	chr10:35011695:G:A	rs2001893	G	A	A	Sox1_MA0870.1	0	1	-	5.92221512452166	5.21983836737418	CACAATTTCAGTATT
chr10	35011789	35011790	chr10:35011790:T:A	rs73256993	T	A	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr10	35126828	35126829	chr10:35126829:C:G	rs779460175	C	G	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	35126854	35126855	chr10:35126855:T:C	rs568310769	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr10	35136425	35136426	chr10:35136426:C:T	rs11592886	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr10	35252759	35252760	chr10:35252760:T:C	rs7070778	T	C	C	Sox1_MA0870.1	6	1	+	3.74202448404861	-0.6741258030702918	TCCAACTGCATTGTT
chr10	35253828	35253829	chr10:35253829:T:C	rs12249814	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr10	35267609	35267610	chr10:35267610:T:C	rs142460001	T	C	T	Sox1_MA0870.1	4	1	-	6.978851938949843	0.20127368477965346	ATCTATATCATTGTC
chr10	35451971	35451972	chr10:35451972:A:G	rs752738902	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr10	35464991	35464992	chr10:35464992:C:T	rs184490835	C	T	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	35519947	35519948	chr10:35519948:T:A	rs7075781	T	A	T	Sox1_MA0870.1	24	0	+	0	0	.
chr10	35795559	35795560	chr10:35795560:G:C	rs56817381	G	C	G	Sox1_MA0870.1	33	0	+	0	0	.
chr10	35903178	35903179	chr10:35903179:C:T	rs2767069	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	36441450	36441451	chr10:36441451:C:A	rs74134822	C	A	C	Sox1_MA0870.1	28	0	+	0	0	.
chr10	36555270	36555271	chr10:36555271:G:A	rs74136805	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr10	36555318	36555319	chr10:36555319:G:A	rs193120047	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr10	36602661	36602662	chr10:36602662:G:A	rs12263586	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr10	36606355	36606356	chr10:36606356:C:T	rs10827651	C	T	C	Sox1_MA0870.1	7	1	-	4.322218332250811	4.719196660047319	GACAGTGGCATTGAT
chr10	36628211	36628212	chr10:36628212:A:C	rs10827670	A	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	36881118	36881119	chr10:36881119:G:A	rs150610605	G	A	g	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	37006898	37006899	chr10:37006899:A:G	rs2248835	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr10	37322666	37322667	chr10:37322667:T:C	rs925026172	T	C	-	Sox1_MA0870.1	27	0	+	0	0	.
chr10	38527731	38527732	chr10:38527732:T:A	rs922968455	T	A	.	Sox1_MA0870.1	34	0	-	0	0	.
chr10	38527740	38527741	chr10:38527741:A:G	rs1217889243	A	G	.	Sox1_MA0870.1	25	0	-	0	0	.
chr10	38527743	38527744	chr10:38527744:G:A	rs80164771	G	A	.	Sox1_MA0870.1	22	0	-	0	0	.
chr10	38527760	38527761	chr10:38527761:A:G	rs1385139118	A	G	.	Sox1_MA0870.1	5	1	-	4.454597908488419	-2.44856685015934	CACCATTCCATTGGA
chr10	38527773	38527774	chr10:38527774:G:T	rs144267389	G	T	.	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	38528302	38528303	chr10:38528303:G:C	rs1327131404	G	C	.	Sox1_MA0870.1	23	0	-	0	0	.
chr10	38528308	38528309	chr10:38528309:C:A	rs1433074406	C	A	.	Sox1_MA0870.1	17	0	-	0	0	.
chr10	38528338	38528339	chr10:38528339:C:G	rs11011630	C	G	.	Sox1_MA0870.1	12	1	-	7.62214522129976	0.7133904419845396	GTCAATTCCATTGCA
chr10	38528361	38528362	chr10:38528362:T:A	rs1294549316	T	A	.	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	39139436	39139437	chr10:39139437:A:G	rs1585819	A	G	.	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	39146088	39146089	chr10:39146089:A:G	rs1191946658	A	G	.	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	39755055	39755056	chr10:39755056:G:A	rs1484932658	G	A	.	Sox1_MA0870.1	24	0	-	0	0	.
chr10	41507100	41507101	chr10:41507101:T:A	rs1329048714	T	A	.	Sox1_MA0870.1	33	0	-	0	0	.
chr10	41524624	41524625	chr10:41524625:A:T	rs1306854829	A	T	.	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	41537999	41538000	chr10:41538000:T:A	rs1170708966	T	A	.	Sox1_MA0870.1	9	1	-	5.4559754934247255	-1.4527792858904944	CACAAAAAGAGTGTT
chr10	41584270	41584271	chr10:41584271:G:C	rs1196524627	G	C	.	Sox1_MA0870.1	8	1	-	6.985495036036864	3.214992043136527	TACAAAGACAGTGTT
chr10	41859978	41859979	chr10:41859979:T:C	rs200129664	T	C	.	Sox1_MA0870.1	34	0	-	0	0	.
chr10	41878667	41878668	chr10:41878668:G:A	rs62641334	G	A	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr10	42793413	42793414	chr10:42793414:A:C	rs190551370	A	C	a	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	42941240	42941241	chr10:42941241:C:T	rs11239839	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr10	43116259	43116260	chr10:43116260:A:G	rs741968	A	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr10	43121302	43121303	chr10:43121303:C:A	rs715106	C	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr10	43140732	43140733	chr10:43140733:G:A	rs9804209	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	43140733	43140734	chr10:43140734:C:T	rs78222320	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr10	43285533	43285534	chr10:43285534:C:T	rs11238502	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr10	43793805	43793806	chr10:43793806:G:T	rs1028519083	G	T	.	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	43793853	43793854	chr10:43793854:A:G	rs10899910	A	G	.	Sox1_MA0870.1	29	0	+	0	0	.
chr10	43793857	43793858	chr10:43793858:G:A	rs57113623	G	A	.	Sox1_MA0870.1	33	0	+	0	0	.
chr10	43824855	43824856	chr10:43824856:T:C	rs7096797	T	C	t	Sox1_MA0870.1	4	1	-	5.049067855287234	-1.7285103988829555	AACAATAGCATTTGG
chr10	44031860	44031861	chr10:44031861:A:C	rs72782973	A	C	A	Sox1_MA0870.1	29	0	-	0	0	.
chr10	44031879	44031880	chr10:44031880:A:G	rs1492710	A	G	A	Sox1_MA0870.1	10	1	-	5.370559408810568	-1.4381376753257662	GCCCATACCATTGTG
chr10	44044008	44044009	chr10:44044009:T:C	rs7923238	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr10	44044047	44044048	chr10:44044048:G:T	chr10:44044048:G:T	G	T	G	Sox1_MA0870.1	22	0	+	0	0	.
chr10	44044048	44044049	chr10:44044049:A:C	chr10:44044049:A:C	A	C	A	Sox1_MA0870.1	23	0	+	0	0	.
chr10	44044130	44044131	chr10:44044131:C:T	rs11238826	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr10	44180843	44180844	chr10:44180844:G:A	rs74138238	G	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	44186280	44186281	chr10:44186281:A:G	rs61855743	A	G	A	Sox1_MA0870.1	9	1	+	6.66144479908948	-0.2473099802257398	AACACAAGCATTGCC
chr10	44321761	44321762	chr10:44321762:A:C	rs2505738	A	C	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	44355927	44355928	chr10:44355928:A:G	rs920174	A	G	A	Sox1_MA0870.1	10	1	-	5.7325669078876	-1.076130176248733	ATCAAAGCCATTGTG
chr10	44403513	44403514	chr10:44403514:C:T	rs1779379	C	T	C	Sox1_MA0870.1	4	1	-	4.848926546205362	11.62650480037555	TACAGTGTCATTGCT
chr10	44419491	44419492	chr10:44419492:A:G	rs12770922	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr10	44506921	44506922	chr10:44506922:A:G	rs11598086	A	G	a	Sox1_MA0870.1	9	1	+	3.7017316402306872	-3.2070231390845336	CACTCTGCCATTGAT
chr10	44589691	44589692	chr10:44589692:G:A	rs12416165	G	A	G	Sox1_MA0870.1	12	1	+	3.5113127943565616	-3.3974419849586583	GACACTGACAGCGCT
chr10	44674134	44674135	chr10:44674135:A:G	rs76639976	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	44984360	44984361	chr10:44984361:G:A	rs10793574	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	45280700	45280701	chr10:45280701:C:T	rs1073450	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr10	45433462	45433463	chr10:45433463:C:G	rs7099874	C	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr10	45468328	45468329	chr10:45468329:T:C	rs17157839	T	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr10	45471149	45471150	chr10:45471150:T:C	rs76491632	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	45471179	45471180	chr10:45471180:G:A	rs901684	G	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr10	45473538	45473539	chr10:45473539:G:C	rs7087633	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr10	46257669	46257670	chr10:46257670:C:T	rs191073147	C	T	.	Sox1_MA0870.1	22	0	+	0	0	.
chr10	46285324	46285325	chr10:46285325:C:A	chr10:46285325:C:A	C	A	.	Sox1_MA0870.1	25	0	-	0	0	.
chr10	46596194	46596195	chr10:46596195:G:A	rs28470456	G	A	G	Sox1_MA0870.1	11	1	-	5.760842655699317	10.71623764150965	AACAATGGCATCGAG
chr10	47045267	47045268	chr10:47045268:A:C	rs528869080	A	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	47045278	47045279	chr10:47045279:G:A	rs145175052	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	47306541	47306542	chr10:47306542:G:A	rs78511326	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr10	47380165	47380166	chr10:47380166:T:A	chr10:47380166:T:A	T	A	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	47380191	47380192	chr10:47380192:G:A	rs4990961	G	A	G	Sox1_MA0870.1	12	1	+	5.3097465265533685	-1.5990082527618514	CACTCTGTCATTGTG
chr10	48274917	48274918	chr10:48274918:G:C	rs17836191	G	C	G	Sox1_MA0870.1	25	0	+	0	0	.
chr10	48410735	48410736	chr10:48410736:A:C	rs9919504	A	C	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	48465704	48465705	chr10:48465705:T:C	rs61838730	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr10	48479240	48479241	chr10:48479241:C:T	rs3888909	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr10	48748489	48748490	chr10:48748490:T:C	rs67702314	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	48833130	48833131	chr10:48833131:G:A	rs7913005	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr10	48907345	48907346	chr10:48907346:C:T	rs12263240	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr10	48948417	48948418	chr10:48948418:C:T	rs2137921	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	49088935	49088936	chr10:49088936:C:T	rs12762834	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr10	49175501	49175502	chr10:49175502:C:T	rs145483835	C	T	C	Sox1_MA0870.1	11	1	+	5.158281048025067	10.1136760338354	AACAATAACAGCGGG
chr10	49284051	49284052	chr10:49284052:A:G	rs117428042	A	G	A	Sox1_MA0870.1	9	1	+	3.927116105863858	-2.981638673451363	CACACTGCCATTCTG
chr10	49323820	49323821	chr10:49323821:G:C	rs200715939	G	C	G	Sox1_MA0870.1	8	1	-	5.8034803003419775	2.03297730744164	GTCAAGAGCATTGTT
chr10	50058186	50058187	chr10:50058187:T:C	rs115554683	T	C	.	Sox1_MA0870.1	31	0	-	0	0	.
chr10	50260748	50260749	chr10:50260749:T:C	rs140566067	T	C	T	Sox1_MA0870.1	6	1	-	4.486519914560933	2.947913221420215	TACATTATCATTGCA
chr10	50326422	50326423	chr10:50326423:C:T	rs10825740	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	50398512	50398513	chr10:50398513:C:T	rs866791075	C	T	C	Sox1_MA0870.1	7	1	+	8.143390241339317	8.131561188790942	AACAATACCGGTGTT
chr10	50538622	50538623	chr10:50538623:A:G	rs2983356	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr10	50565952	50565953	chr10:50565953:T:C	rs2983362	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr10	51043832	51043833	chr10:51043833:G:A	rs11814118	G	A	G	Sox1_MA0870.1	13	1	+	8.90176156158794	9.198783261635853	GACAATGGCATTGGA
chr10	51090432	51090433	chr10:51090433:T:C	rs2339678	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr10	51269749	51269750	chr10:51269750:G:A	rs7077723	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr10	51476975	51476976	chr10:51476976:A:G	rs10762173	A	G	G	Sox1_MA0870.1	1	1	+	3.869049214046965	-0.2292414413461782	TACAATTGCATAGGT
chr10	51580925	51580926	chr10:51580926:A:G	rs35937312	A	G	A	Sox1_MA0870.1	5	1	-	4.536118987087573	-2.367045771560186	CCCCATTGCATTGTG
chr10	51682798	51682799	chr10:51682799:C:T	rs6480412	C	T	T	Sox1_MA0870.1	2	1	+	4.340271734478383	-2.5684830448368396	TACTATAACAGTGCC
chr10	52055179	52055180	chr10:52055180:C:T	rs4457701	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	52100727	52100728	chr10:52100728:T:C	rs4935029	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr10	52452063	52452064	chr10:52452064:G:A	chr10:52452064:G:A	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	52478965	52478966	chr10:52478966:T:C	rs150071220	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	52613732	52613733	chr10:52613733:G:A	rs10733910	G	A	A	Sox1_MA0870.1	13	1	-	4.3481110295787	6.525766327029695	AACACAGTCAGTGCT
chr10	53293577	53293578	chr10:53293578:C:T	rs11003515	C	T	T	Sox1_MA0870.1	24	0	-	0	0	.
chr10	53724889	53724890	chr10:53724890:A:G	rs7067556	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr10	53724918	53724919	chr10:53724919:T:C	rs2384303	T	C	T	Sox1_MA0870.1	4	1	-	5.498225351510762	-1.2793529026594253	AACAAAAGCAATGTT
chr10	54112238	54112239	chr10:54112239:C:T	rs10825239	C	T	T	Sox1_MA0870.1	2	1	+	5.5065289194537	-1.4022258598615198	ACCAATGACATTTTT
chr10	54304187	54304188	chr10:54304188:C:T	rs7919725	C	T	T	Sox1_MA0870.1	3	1	+	8.426535586787049	7.998005205747889	ACCCATATCATTGTT
chr10	54470331	54470332	chr10:54470332:G:T	rs79733930	G	T	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	54716346	54716347	chr10:54716347:A:C	rs67442181	A	C	C	Sox1_MA0870.1	29	0	-	0	0	.
chr10	54986173	54986174	chr10:54986174:A:G	rs2178644	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr10	54986213	54986214	chr10:54986214:C:T	rs2178643	C	T	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	55146452	55146453	chr10:55146453:C:A	rs9971365	C	A	-	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	55667454	55667455	chr10:55667455:G:A	rs1574191	G	A	T	Sox1_MA0870.1	2	1	-	7.055345583481126	0.14659080416590597	GGCAATGACATTGCC
chr10	55822837	55822838	chr10:55822838:G:A	rs10825629	G	A	a	Sox1_MA0870.1	12	1	+	4.396671066760957	-2.5120837125542628	ATCAATTTCTTTGTG
chr10	55924836	55924837	chr10:55924837:G:A	rs2066058	G	A	a	Sox1_MA0870.1	8	1	-	5.01566289208799	0.8340533454507071	AACATTAACAGTGCC
chr10	56068945	56068946	chr10:56068946:C:T	rs7088202	C	T	C	Sox1_MA0870.1	9	1	-	4.186149707155081	11.0949044864703	CACAATTACGGTGCT
chr10	56068957	56068958	chr10:56068958:C:A	rs7088207	C	A	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	57018374	57018375	chr10:57018375:C:T	rs10825965	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	57212228	57212229	chr10:57212229:T:G	rs7082837	T	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr10	57543546	57543547	chr10:57543547:C:T	rs11005855	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr10	57812019	57812020	chr10:57812020:G:A	rs6481361	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr10	57925275	57925276	chr10:57925276:G:C	rs7085744	G	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	57925306	57925307	chr10:57925307:C:T	rs7086874	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr10	58105087	58105088	chr10:58105088:C:T	rs58670495	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr10	58157515	58157516	chr10:58157516:G:A	rs147264832	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	58209349	58209350	chr10:58209350:G:C	rs12261547	G	C	G	Sox1_MA0870.1	8	1	-	10.697926158673793	6.927423165773456	CACAATTGCAGTGCT
chr10	58438294	58438295	chr10:58438295:T:C	rs181001432	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr10	58475720	58475721	chr10:58475721:C:T	rs117008571	C	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr10	58546155	58546156	chr10:58546156:G:C	rs1649066	G	C	G	Sox1_MA0870.1	31	0	-	0	0	.
chr10	58593127	58593128	chr10:58593128:G:A	rs10740732	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr10	58609716	58609717	chr10:58609717:C:T	rs12244874	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr10	58662413	58662414	chr10:58662414:A:T	rs541955605	A	T	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	58856930	58856931	chr10:58856931:G:A	rs72804472	G	A	G	Sox1_MA0870.1	7	1	-	3.5562932368642954	3.544464184315922	GACAGTGCCATTGCA
chr10	58856942	58856943	chr10:58856943:C:T	rs111658871	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	58895747	58895748	chr10:58895748:G:A	rs282691	G	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr10	58895758	58895759	chr10:58895759:A:G	rs190749	A	G	G	Sox1_MA0870.1	16	0	-	0	0	.
chr10	59079515	59079516	chr10:59079516:A:G	rs12244066	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	59079860	59079861	chr10:59079861:C:T	rs73306371	C	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	59366215	59366216	chr10:59366216:C:T	rs17184032	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr10	59579960	59579961	chr10:59579961:G:A	rs10733987	G	A	A	Sox1_MA0870.1	10	1	+	4.090707242551783	-0.4768649130209893	GATAATTTCAGTGTG
chr10	59586618	59586619	chr10:59586619:A:G	rs7907910	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr10	59594118	59594119	chr10:59594119:A:G	rs4948233	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr10	59710485	59710486	chr10:59710486:T:A	rs75322305	T	A	T	Sox1_MA0870.1	2	1	+	3.2741451041591816	3.2741451041591816	AATACTACCATTGGC
chr10	59751269	59751270	chr10:59751270:G:T	rs117544478	G	T	G	Sox1_MA0870.1	15	0	-	0	0	.
chr10	59814224	59814225	chr10:59814225:T:C	rs10761417	T	C	C	Sox1_MA0870.1	4	1	-	4.9211063431207025	-1.8564719110494843	AATAATAAAATTGTT
chr10	59901805	59901806	chr10:59901806:C:T	rs7914022	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr10	59943765	59943766	chr10:59943766:C:A	rs373132870	C	A	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	59945998	59945999	chr10:59945999:C:G	rs73269307	C	G	C	Sox1_MA0870.1	18	0	-	0	0	.
chr10	60130456	60130457	chr10:60130457:G:A	rs113618506	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	60260528	60260529	chr10:60260529:T:C	rs1026533	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr10	60342557	60342558	chr10:60342558:A:G	rs1473404	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	60368052	60368053	chr10:60368053:C:T	rs79359809	C	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr10	60368064	60368065	chr10:60368065:A:G	rs79663415	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr10	60375435	60375436	chr10:60375436:G:C	rs117134507	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr10	60375462	60375463	chr10:60375463:T:G	rs187250308	T	G	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	60573906	60573907	chr10:60573907:C:T	rs151007800	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	60874862	60874863	chr10:60874863:C:T	rs2279942	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr10	60908085	60908086	chr10:60908086:G:C	rs10994574	G	C	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	60953989	60953990	chr10:60953990:T:C	rs12220887	T	C	T	Sox1_MA0870.1	9	1	-	4.337461389968019	-2.571293389347203	CACAATAACATGGAA
chr10	61163504	61163505	chr10:61163505:C:T	rs11818852	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	61163544	61163545	chr10:61163545:T:C	rs116123721	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr10	61376406	61376407	chr10:61376407:C:T	rs118067556	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr10	61548310	61548311	chr10:61548311:C:G	rs2650717	C	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr10	61548635	61548636	chr10:61548636:A:G	rs2254084	A	G	G	Sox1_MA0870.1	3	1	+	6.889095542136941	-0.011494125060284355	AACACTGCCATTTTT
chr10	61563594	61563595	chr10:61563595:C:T	rs2787716	C	T	c	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	61602786	61602787	chr10:61602787:T:C	rs2814020	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr10	61609673	61609674	chr10:61609674:G:A	rs73285827	G	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr10	61623639	61623640	chr10:61623640:G:A	rs1456291	G	A	G	Sox1_MA0870.1	8	1	-	6.67145769535025	2.489848148712967	AACTCTTCCATTGCT
chr10	61623640	61623641	chr10:61623641:G:T	rs1456290	G	T	G	Sox1_MA0870.1	7	1	-	6.67145769535025	7.101218522886291	AACTCTTCCATTGCT
chr10	61793185	61793186	chr10:61793186:C:T	rs1002843976	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr10	61815582	61815583	chr10:61815583:C:T	rs10509161	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr10	61940468	61940469	chr10:61940469:A:T	rs4360655	A	T	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	61940485	61940486	chr10:61940486:A:G	rs4562771	A	G	G	Sox1_MA0870.1	3	1	+	5.0703471561401265	-1.8302425110570986	AACACTATCATTTAT
chr10	61993722	61993723	chr10:61993723:A:G	rs9415635	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr10	61993736	61993737	chr10:61993737:G:A	rs80092100	G	A	G	Sox1_MA0870.1	2	1	-	5.9797100202214954	-0.9290447590937272	GACAATTATATTGAA
chr10	61993752	61993753	chr10:61993753:A:T	rs370520548	A	T	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	62073420	62073421	chr10:62073421:T:C	rs149085090	T	C	T	Sox1_MA0870.1	9	1	-	6.206527118460004	-0.7022276608552162	CACACTTTCATTATT
chr10	62196938	62196939	chr10:62196939:C:T	rs7088302	C	T	T	Sox1_MA0870.1	4	1	-	3.8632847780210104	10.640863032191199	AACAGTGACATTGGA
chr10	62214469	62214470	chr10:62214470:T:G	rs10995090	T	G	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr10	62225090	62225091	chr10:62225091:C:T	rs12360043	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr10	62344109	62344110	chr10:62344110:C:T	rs7087028	C	T	c	Sox1_MA0870.1	26	0	+	0	0	.
chr10	62424763	62424764	chr10:62424764:C:A	rs3999111	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	62610700	62610701	chr10:62610701:C:G	rs116835850	C	G	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr10	62631614	62631615	chr10:62631615:G:A	rs10995245	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr10	62747210	62747211	chr10:62747211:C:T	rs224067	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr10	62959855	62959856	chr10:62959856:T:A	rs16917950	T	A	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	63282093	63282094	chr10:63282094:C:T	rs34736861	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr10	63537608	63537609	chr10:63537609:T:G	rs72837085	T	G	T	Sox1_MA0870.1	27	0	+	0	0	.
chr10	63667024	63667025	chr10:63667025:G:A	rs36080042	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	63667038	63667039	chr10:63667039:G:C	rs76404637	G	C	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	63887165	63887166	chr10:63887166:G:C	rs7921823	G	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	63900022	63900023	chr10:63900023:T:C	rs4745828	T	C	C	Sox1_MA0870.1	6	1	+	3.8302446218490416	-0.5859056652698599	TACAATTCCTTTGGT
chr10	63931892	63931893	chr10:63931893:C:T	rs2248496	C	T	T	Sox1_MA0870.1	34	0	+	0	0	.
chr10	63965537	63965538	chr10:63965538:C:A	rs12265035	C	A	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	64052419	64052420	chr10:64052420:G:A	rs73304826	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	64160371	64160372	chr10:64160372:C:T	rs72837564	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	64272131	64272132	chr10:64272132:C:T	rs184073786	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	64272178	64272179	chr10:64272179:G:T	rs2601720	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr10	64508908	64508909	chr10:64508909:T:G	rs7923692	T	G	G	Sox1_MA0870.1	5	1	+	4.777311236343315	-2.125853522304443	TGCAATAACTTTGTT
chr10	64712739	64712740	chr10:64712740:G:A	rs10822339	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr10	64892785	64892786	chr10:64892786:G:A	rs2932881	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr10	65067627	65067628	chr10:65067628:A:G	rs61858802	A	G	A	Sox1_MA0870.1	10	1	+	4.102760444320029	8.670332599892802	CTCAATAGCAATGTA
chr10	65159540	65159541	chr10:65159541:A:T	rs10996247	A	T	A	Sox1_MA0870.1	9	1	+	11.10022050300384	4.1914657236886175	ATCAATAACATTGAT
chr10	65159590	65159591	chr10:65159591:T:C	rs12416189	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr10	65276856	65276857	chr10:65276857:C:T	rs971863	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr10	65279116	65279117	chr10:65279117:T:C	rs7913286	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	65660088	65660089	chr10:65660089:C:T	rs74602890	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr10	65660095	65660096	chr10:65660096:G:A	rs141011963	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	65762734	65762735	chr10:65762735:T:C	rs7084681	T	C	T	Sox1_MA0870.1	5	1	+	8.818407721958138	1.9152429633103791	TTCAATAACATTGCC
chr10	65765134	65765135	chr10:65765135:C:A	rs10822630	C	A	C	Sox1_MA0870.1	21	0	-	0	0	.
chr10	65910988	65910989	chr10:65910989:C:T	rs10996775	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr10	66398409	66398410	chr10:66398410:A:G	rs2456740	A	G	G	Sox1_MA0870.1	3	1	+	3.9067099949642765	-2.99387967223295	AACAATTGCATGGGA
chr10	66626326	66626327	chr10:66626327:G:A	rs79105848	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr10	66783029	66783030	chr10:66783030:T:C	rs141391662	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	66848449	66848450	chr10:66848450:T:C	rs7083846	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr10	67043633	67043634	chr10:67043634:T:A	rs547158879	T	A	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	67087348	67087349	chr10:67087349:A:G	rs4746657	A	G	G	Sox1_MA0870.1	22	0	-	0	0	.
chr10	67230375	67230376	chr10:67230376:A:G	rs11497953	A	G	A	Sox1_MA0870.1	4	1	+	3.730209872735974	-3.047368381434215	TACGATAACATTGGC
chr10	67669894	67669895	chr10:67669895:T:A	rs3125322	T	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	67840196	67840197	chr10:67840197:C:A	rs190632204	C	A	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	68156564	68156565	chr10:68156565:G:A	rs71475229	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr10	68156603	68156604	chr10:68156604:A:G	rs10997956	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr10	68329257	68329258	chr10:68329258:C:T	rs113679866	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr10	68331565	68331566	chr10:68331566:C:G	rs138330973	C	G	C	Sox1_MA0870.1	18	0	-	0	0	.
chr10	68532580	68532581	chr10:68532581:T:G	rs528015946	T	G	T	Sox1_MA0870.1	33	0	-	0	0	.
chr10	68784068	68784069	chr10:68784069:T:G	rs776233911	T	G	T	Sox1_MA0870.1	25	0	-	0	0	.
chr10	68859162	68859163	chr10:68859163:G:A	rs1417940	G	A	a	Sox1_MA0870.1	25	0	-	0	0	.
chr10	68963232	68963233	chr10:68963233:A:C	rs10998504	A	C	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr10	69044028	69044029	chr10:69044029:T:C	rs2429014	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr10	69048165	69048166	chr10:69048166:T:G	rs988718686	T	G	T	Sox1_MA0870.1	25	0	-	0	0	.
chr10	69075047	69075048	chr10:69075048:T:C	rs7097160	T	C	C	Sox1_MA0870.1	11	1	+	4.17476114837462	-0.7806338374357141	CACAAATACAGTGCA
chr10	69202504	69202505	chr10:69202505:C:T	rs35591164	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr10	69360565	69360566	chr10:69360566:G:T	rs10998742	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr10	69382735	69382736	chr10:69382736:C:T	rs140498607	C	T	C	Sox1_MA0870.1	12	1	-	3.798516072130977	-3.1102387071842426	AACCACGGCATTGTT
chr10	69419353	69419354	chr10:69419354:A:G	rs11597682	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr10	69421886	69421887	chr10:69421887:G:T	rs77246631	G	T	G	Sox1_MA0870.1	2	1	-	6.458006682092764	-0.45074809722245723	CACACTCTCAGTGTT
chr10	69492286	69492287	chr10:69492287:C:T	rs10998835	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr10	69614090	69614091	chr10:69614091:G:A	rs866475836	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	69628733	69628734	chr10:69628734:A:C	rs2812576	A	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	69628754	69628755	chr10:69628755:C:T	rs2616095	C	T	C	Sox1_MA0870.1	5	1	+	4.278292990086417	11.181457748734175	ATCAACGACATTGTG
chr10	69646722	69646723	chr10:69646723:T:C	rs79884604	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr10	69728424	69728425	chr10:69728425:A:G	rs145290145	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr10	69840003	69840004	chr10:69840004:G:A	rs12355979	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr10	69840020	69840021	chr10:69840021:C:T	rs57098602	C	T	C	Sox1_MA0870.1	8	1	+	4.34999147807639	0.16838193143910773	GACAATTGCGGTGTC
chr10	69869939	69869940	chr10:69869940:G:A	rs4117554	G	A	G	Sox1_MA0870.1	10	1	+	3.917607330817736	-0.6499648247550373	AACACTTACTGTGTG
chr10	69876559	69876560	chr10:69876560:A:G	rs76099565	A	G	A	Sox1_MA0870.1	13	1	-	3.687551406256217	1.509896108805223	AGCAATTCCACTGTG
chr10	69887063	69887064	chr10:69887064:G:C	rs117354073	G	C	G	Sox1_MA0870.1	2	1	-	4.650561852439799	-2.2581929268754206	TACACAGTCATTGCT
chr10	69953008	69953009	chr10:69953009:T:C	rs74139248	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr10	69966643	69966644	chr10:69966644:T:C	rs11816910	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	69994410	69994411	chr10:69994411:A:G	rs553795929	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr10	70233466	70233467	chr10:70233467:C:T	rs536406696	C	T	C	Sox1_MA0870.1	10	1	-	2.5367171969796214	-2.0308549585931512	AACACTAGCAGAGCC
chr10	70233484	70233485	chr10:70233485:C:A	rs534972967	C	A	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	70233490	70233491	chr10:70233491:G:A	rs538875333	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	70273211	70273212	chr10:70273212:G:A	rs10999227	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr10	70357831	70357832	chr10:70357832:T:C	rs4747012	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	70357870	70357871	chr10:70357871:T:C	rs78429704	T	C	C	Sox1_MA0870.1	20	0	+	0	0	.
chr10	70656887	70656888	chr10:70656888:G:A	rs17600025	G	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr10	70726965	70726966	chr10:70726966:G:A	rs2587480	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr10	70742797	70742798	chr10:70742798:C:T	rs7069182	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	70755531	70755532	chr10:70755532:C:T	rs12762984	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	70822266	70822267	chr10:70822267:G:C	rs76148506	G	C	G	Sox1_MA0870.1	8	1	-	4.37846359151449	0.6079605986141524	GCCAAATACAGTGTT
chr10	70986385	70986386	chr10:70986386:C:T	rs1614131	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr10	71241603	71241604	chr10:71241604:C:T	rs10999743	C	T	t	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	71395372	71395373	chr10:71395373:G:A	rs552579402	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr10	71520849	71520850	chr10:71520850:A:G	rs10999861	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	71588200	71588201	chr10:71588201:A:G	rs138622309	A	G	A	Sox1_MA0870.1	9	1	+	7.847365332373041	0.9386105530578197	AACAAAAACATTGAC
chr10	71631883	71631884	chr10:71631884:G:A	rs61851977	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr10	71667023	71667024	chr10:71667024:A:G	rs74357729	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	71685949	71685950	chr10:71685950:T:C	rs1227091	T	C	T	Sox1_MA0870.1	0	1	-	7.227572124856669	5.885448982049916	AACAACTTCATTGCT
chr10	71740069	71740070	chr10:71740070:G:A	rs1227057	G	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	71746968	71746969	chr10:71746969:G:T	rs74364237	G	T	G	Sox1_MA0870.1	15	0	-	0	0	.
chr10	71746982	71746983	chr10:71746983:T:A	rs74145632	T	A	T	Sox1_MA0870.1	1	1	-	5.434888080500853	2.1576038333397114	CACAATAGCAGGGTC
chr10	71771311	71771312	chr10:71771312:A:G	rs10762477	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr10	71895932	71895933	chr10:71895933:G:A	rs7087344	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr10	71922109	71922110	chr10:71922110:T:C	rs77381493	T	C	T	Sox1_MA0870.1	9	1	-	5.621733018880666	-1.287021760434555	AACAAAGACATTGGA
chr10	71958134	71958135	chr10:71958135:A:G	rs12245721	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr10	71958156	71958157	chr10:71958157:C:T	rs11527412	C	T	T	Sox1_MA0870.1	12	1	-	4.023353685870245	-2.8854010934449748	AACAATGGCAACGTT
chr10	72013240	72013241	chr10:72013241:G:A	rs4148953	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr10	72542890	72542891	chr10:72542891:C:G	rs7899516	C	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	73262263	73262264	chr10:73262264:C:A	rs73272327	C	A	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	73553345	73553346	chr10:73553346:A:C	rs760693258	A	C	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	73894417	73894418	chr10:73894418:C:T	rs74614028	C	T	c	Sox1_MA0870.1	33	0	-	0	0	.
chr10	73914120	73914121	chr10:73914121:C:T	rs2227568	C	T	C	Sox1_MA0870.1	5	1	+	4.4024142497736065	11.305579008421367	CACAACGACATTGGT
chr10	74449052	74449053	chr10:74449053:T:C	rs10762618	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr10	74477739	74477740	chr10:74477740:C:T	rs7100550	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr10	75192363	75192364	chr10:75192364:G:A	rs77814027	G	A	G	Sox1_MA0870.1	13	1	-	4.120485934461006	6.298141231912	ATCATTTGCATTGCT
chr10	75199600	75199601	chr10:75199601:A:G	rs12257895	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr10	75230486	75230487	chr10:75230487:C:T	rs11001335	C	T	C	Sox1_MA0870.1	14	1	+	14.545963196181711	16.056972600663116	CACAATACCATTGTC
chr10	75230492	75230493	chr10:75230493:T:C	rs556535157	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr10	75244037	75244038	chr10:75244038:C:T	rs142841096	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	75248518	75248519	chr10:75248519:C:T	rs12217349	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr10	75601333	75601334	chr10:75601334:G:A	rs3001922	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr10	76193262	76193263	chr10:76193263:G:T	rs12249157	G	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr10	76232748	76232749	chr10:76232749:A:G	rs116861773	A	G	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	76281357	76281358	chr10:76281358:A:G	rs16933167	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr10	76395523	76395524	chr10:76395524:G:A	rs1873463	G	A	A	Sox1_MA0870.1	32	0	+	0	0	.
chr10	76397373	76397374	chr10:76397374:G:C	rs139530571	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	77090987	77090988	chr10:77090988:G:A	rs56057346	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	77246102	77246103	chr10:77246103:A:G	chr10:77246103:A:G	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr10	77363562	77363563	chr10:77363563:A:G	rs250710	A	G	A	Sox1_MA0870.1	3	1	+	5.734993524303643	-1.165596142893583	AACACTTCCATGGTG
chr10	77563185	77563186	chr10:77563186:C:T	rs2673476	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr10	77563198	77563199	chr10:77563199:T:C	rs2719996	T	C	T	Sox1_MA0870.1	6	1	-	6.72423818939267	5.185631496251952	AACACTATTAGTGCT
chr10	77631544	77631545	chr10:77631545:G:A	rs113936647	G	A	G	Sox1_MA0870.1	0	1	-	5.49667511300259	4.79429835585511	CACACTGGCAGTGAC
chr10	77635273	77635274	chr10:77635274:C:T	rs2720005	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr10	77639993	77639994	chr10:77639994:G:A	rs2812419	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr10	77651686	77651687	chr10:77651687:A:G	rs2673474	A	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr10	77693403	77693404	chr10:77693404:T:C	rs11813624	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	77785595	77785596	chr10:77785596:T:C	rs2812436	T	C	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	77785607	77785608	chr10:77785608:A:G	rs2579156	A	G	G	Sox1_MA0870.1	9	1	+	3.4955721955693875	-3.413182583745833	AACTGTGGCATTGTT
chr10	77836366	77836367	chr10:77836367:T:C	rs145732611	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr10	77836376	77836377	chr10:77836377:C:T	rs78575985	C	T	C	Sox1_MA0870.1	12	1	-	5.976426614821488	-0.9323281644937333	AACACTTGCTTTGTC
chr10	77840089	77840090	chr10:77840090:A:G	rs1248669	A	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr10	77870194	77870195	chr10:77870195:A:G	rs1248659	A	G	a	Sox1_MA0870.1	3	1	+	7.717843148822949	0.8172534816257225	GACAAATCCAGTGTT
chr10	77889894	77889895	chr10:77889895:G:T	rs11002322	G	T	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	78176431	78176432	chr10:78176432:G:A	rs72642297	G	A	G	Sox1_MA0870.1	12	1	+	5.728060155959783	-1.1806946233554378	AACAATGCCATCGAG
chr10	78220749	78220750	chr10:78220750:G:A	rs1249150	G	A	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr10	78410984	78410985	chr10:78410985:A:G	rs12783943	A	G	G	Sox1_MA0870.1	9	1	+	5.5040953194115705	-1.4046594599036508	CACACCAGCATTGTG
chr10	78543140	78543141	chr10:78543141:C:T	rs55896222	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr10	78550878	78550879	chr10:78550879:G:A	rs7090749	G	A	A	Sox1_MA0870.1	4	1	-	8.013310726437417	3.192545406892447	CACACTTACATTGGA
chr10	78635184	78635185	chr10:78635185:G:C	rs7100822	G	C	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	78718743	78718744	chr10:78718744:C:T	rs11002643	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr10	78792489	78792490	chr10:78792490:A:G	rs11002674	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	78804845	78804846	chr10:78804846:A:G	rs7916180	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr10	78900848	78900849	chr10:78900849:A:T	rs2559797	A	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr10	78915340	78915341	chr10:78915341:G:C	rs114730985	G	C	G	Sox1_MA0870.1	33	0	-	0	0	.
chr10	78960458	78960459	chr10:78960459:A:G	rs112634910	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	79019999	79020000	chr10:79020000:C:T	rs7901919	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	79036695	79036696	chr10:79036696:A:G	rs7098769	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr10	79036706	79036707	chr10:79036707:C:T	rs35908203	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr10	79037287	79037288	chr10:79037288:C:T	rs113105314	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr10	79080072	79080073	chr10:79080073:G:A	rs551017417	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr10	79080097	79080098	chr10:79080098:C:T	rs547989997	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr10	79385778	79385779	chr10:79385779:T:C	rs1063119	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	79396997	79396998	chr10:79396998:G:A	rs6480936	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr10	79923520	79923521	chr10:79923521:C:T	rs34230583	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	79948256	79948257	chr10:79948257:C:T	rs723192	C	T	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	80320640	80320641	chr10:80320641:C:T	rs10749559	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	80410358	80410359	chr10:80410359:A:G	rs58560242	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	80539665	80539666	chr10:80539666:C:T	rs541643862	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	80539666	80539667	chr10:80539667:G:A	rs73307107	G	A	g	Sox1_MA0870.1	-18	0	+	0	0	.
chr10	80597873	80597874	chr10:80597874:G:A	rs35743232	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr10	80613038	80613039	chr10:80613039:C:T	rs4934371	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr10	80737521	80737522	chr10:80737522:A:G	rs7916858	A	G	A	Sox1_MA0870.1	13	1	-	8.812627373175324	6.634972075724329	TACAAAATCATTGTC
chr10	80913942	80913943	chr10:80913943:T:C	rs17622815	T	C	T	Sox1_MA0870.1	5	1	+	4.467204995370377	-2.4359597632773817	TAAAATATCAGTGTG
chr10	81693499	81693500	chr10:81693500:C:T	rs1293020	C	T	c	Sox1_MA0870.1	33	0	-	0	0	.
chr10	81961612	81961613	chr10:81961613:C:A	rs113171444	C	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr10	82206563	82206564	chr10:82206564:A:G	rs7908131	A	G	A	Sox1_MA0870.1	4	1	+	8.508100594114339	1.7305223399441507	CCCAATGCCAGTGTT
chr10	82856265	82856266	chr10:82856266:G:C	rs2483295	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr10	82874880	82874881	chr10:82874881:A:G	rs7090079	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr10	82895769	82895770	chr10:82895770:C:A	rs61858780	C	A	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr10	82920742	82920743	chr10:82920743:A:G	rs1576987	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr10	83538630	83538631	chr10:83538631:A:T	rs78185600	A	T	A	Sox1_MA0870.1	1	1	+	4.41529919819923	1.1380149510380897	AATAATGTCAGTGCT
chr10	84136379	84136380	chr10:84136380:A:G	rs7085968	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr10	84178793	84178794	chr10:84178794:C:T	rs61429630	C	T	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr10	84224966	84224967	chr10:84224967:G:A	rs11200928	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr10	84244481	84244482	chr10:84244482:T:C	rs10736319	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr10	84244512	84244513	chr10:84244513:C:T	rs10887261	C	T	C	Sox1_MA0870.1	13	1	+	3.986054064400337	6.163709361851331	GACATTGACATTGCA
chr10	84294359	84294360	chr10:84294360:T:C	rs11200968	T	C	T	Sox1_MA0870.1	6	1	-	4.333756571704372	2.7951498785636537	GACACAAACATTGAG
chr10	84374888	84374889	chr10:84374889:T:C	rs181441926	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	84536864	84536865	chr10:84536865:C:T	rs1211188	C	T	C	Sox1_MA0870.1	12	1	+	4.396824229106145	4.396824229106145	CACAATGACATTCGT
chr10	84704830	84704831	chr10:84704831:T:C	rs945146	T	C	C	Sox1_MA0870.1	13	1	+	3.7628501492409594	1.5851948517899652	ATCAAGGACAGTGTT
chr10	85444928	85444929	chr10:85444929:G:A	rs1110150	G	A	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	85936398	85936399	chr10:85936399:C:T	rs75596541	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr10	86019729	86019730	chr10:86019730:G:A	rs76597097	G	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	86039738	86039739	chr10:86039739:C:G	rs17106202	C	G	G	Sox1_MA0870.1	0	1	-	7.8140952796750485	7.919921073926821	GACAAATGCATTGCT
chr10	86123158	86123159	chr10:86123159:C:T	rs11595656	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr10	86234391	86234392	chr10:86234392:C:T	rs2814332	C	T	T	Sox1_MA0870.1	5	1	+	5.24173327053208	12.14489802917984	AACAACGGCATTGGT
chr10	86288453	86288454	chr10:86288454:G:T	rs867820	G	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr10	86651693	86651694	chr10:86651694:A:G	rs2675688	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr10	86655645	86655646	chr10:86655646:G:A	rs981367600	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr10	86664493	86664494	chr10:86664494:G:A	rs2675694	G	A	G	Sox1_MA0870.1	8	1	-	5.9593949079632935	1.7777853613260115	GACATTTCCAGTGTT
chr10	86773673	86773674	chr10:86773674:G:T	rs77537633	G	T	G	Sox1_MA0870.1	26	0	-	0	0	.
chr10	86773684	86773685	chr10:86773685:A:G	rs117165809	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr10	86773719	86773720	chr10:86773720:C:T	rs71473276	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	87054552	87054553	chr10:87054553:C:T	rs920532966	C	T	c	Sox1_MA0870.1	25	0	-	0	0	.
chr10	87544699	87544700	chr10:87544700:C:T	rs77091479	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr10	87636616	87636617	chr10:87636617:A:G	rs963860477	A	G	A	Sox1_MA0870.1	7	1	-	5.011591641933215	5.0234206944815885	AACCCTGTCATTGCC
chr10	87824034	87824035	chr10:87824035:G:C	rs7900225	G	C	C	Sox1_MA0870.1	17	0	-	0	0	.
chr10	87926751	87926752	chr10:87926752:G:T	rs17107001	G	T	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	87978534	87978535	chr10:87978535:G:A	rs148207180	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr10	88131043	88131044	chr10:88131044:G:C	rs10887784	G	C	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	88262889	88262890	chr10:88262890:C:T	rs286492	C	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr10	88327375	88327376	chr10:88327376:C:G	rs72818100	C	G	C	Sox1_MA0870.1	10	1	-	7.325465161539914	2.7578930059671416	CACAAAAACAGTGTA
chr10	88477640	88477641	chr10:88477641:G:A	rs1325907	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr10	88489326	88489327	chr10:88489327:G:T	rs17343533	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr10	88491162	88491163	chr10:88491163:G:C	rs10887827	G	C	G	Sox1_MA0870.1	4	1	-	9.029823930375711	4.2090586108307395	AGCACTAGCAGTGTT
chr10	88951543	88951544	chr10:88951544:A:G	rs12264840	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr10	89063623	89063624	chr10:89063624:A:G	rs77638774	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr10	89121775	89121776	chr10:89121776:G:A	rs80192414	G	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr10	89220725	89220726	chr10:89220726:C:T	rs141945037	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	89246153	89246154	chr10:89246154:A:G	rs143644959	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	89278262	89278263	chr10:89278263:C:A	rs112086829	C	A	C	Sox1_MA0870.1	7	1	+	3.567156886862637	3.9969177143986783	CACAAGACCAGTGAT
chr10	89285612	89285613	chr10:89285613:G:A	chr10:89285613:G:A	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr10	89400334	89400335	chr10:89400335:G:A	rs2481931	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	89468121	89468122	chr10:89468122:A:G	rs74922049	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	89849311	89849312	chr10:89849312:T:C	rs10881691	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	89916681	89916682	chr10:89916682:G:T	rs115873718	G	T	G	Sox1_MA0870.1	7	1	-	3.8362667143074307	4.266027541843472	TACAATTCCATGGGT
chr10	90170955	90170956	chr10:90170956:G:A	rs4142854	G	A	G	Sox1_MA0870.1	7	1	+	11.10646438186902	11.503442709665531	AACAATTGCATTGAA
chr10	90317516	90317517	chr10:90317517:C:A	rs11186122	C	A	A	Sox1_MA0870.1	8	1	+	3.745078335236001	-2.1480913190822126	CACAATGGCATAGCG
chr10	90343633	90343634	chr10:90343634:A:G	rs75584463	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr10	90451601	90451602	chr10:90451602:A:G	rs137981854	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr10	90470665	90470666	chr10:90470666:T:A	rs2901027	T	A	T	Sox1_MA0870.1	31	0	+	0	0	.
chr10	90880423	90880424	chr10:90880424:T:G	rs11594649	T	G	T	Sox1_MA0870.1	21	0	-	0	0	.
chr10	90897239	90897240	chr10:90897240:T:C	rs79703029	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr10	90919872	90919873	chr10:90919873:G:C	rs10047267	G	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	90959926	90959927	chr10:90959927:C:T	rs138223791	C	T	C	Sox1_MA0870.1	10	1	+	3.99448929460801	10.803186378744343	ACCAATTACACTGCT
chr10	91049236	91049237	chr10:91049237:T:C	rs61857898	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	91088895	91088896	chr10:91088896:A:T	chr10:91088896:A:T	A	T	A	Sox1_MA0870.1	11	1	-	4.770019167417354	-2.1327135194394775	AACAATTACATTTAG
chr10	91208829	91208830	chr10:91208830:G:T	rs72815408	G	T	G	Sox1_MA0870.1	12	1	+	3.8651664163121326	-3.0435883630030873	GACACCTTCAGTGTT
chr10	91284695	91284696	chr10:91284696:G:A	rs181579242	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	91312187	91312188	chr10:91312188:G:A	rs2421322	G	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr10	91545468	91545469	chr10:91545469:C:T	rs10881919	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr10	91594210	91594211	chr10:91594211:G:A	rs60894624	G	A	G	Sox1_MA0870.1	14	1	+	8.684884389365031	8.509553152297986	AGCAATTACAGTGTG
chr10	91609338	91609339	chr10:91609339:A:G	rs4933677	A	G	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	91614083	91614084	chr10:91614084:A:C	rs7071622	A	C	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	91621611	91621612	chr10:91621612:G:A	rs529680285	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr10	91759034	91759035	chr10:91759035:T:C	rs17107010	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr10	91797097	91797098	chr10:91797098:T:C	rs1341263	T	C	T	Sox1_MA0870.1	1	1	-	7.058584530187567	2.9602938747944276	CACAATAATATTGAA
chr10	91814160	91814161	chr10:91814161:G:C	rs10881973	G	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr10	91814205	91814206	chr10:91814206:A:C	rs7067554	A	C	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	91856870	91856871	chr10:91856871:G:T	rs1772188	G	T	G	Sox1_MA0870.1	7	1	-	9.634238125462273	10.063998952998315	CACAATACTAGTGTT
chr10	92291417	92291418	chr10:92291418:C:T	rs139889315	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr10	92747832	92747833	chr10:92747833:G:T	rs11816075	G	T	g	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	92747854	92747855	chr10:92747855:A:G	rs2488066	A	G	A	Sox1_MA0870.1	9	1	+	3.2476101411306426	-3.6611446381845774	ACCACTACCACTGTC
chr10	92757306	92757307	chr10:92757307:C:T	rs11187167	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr10	92895463	92895464	chr10:92895464:T:C	rs61862263	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	93126200	93126201	chr10:93126201:A:G	rs17108210	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	93190491	93190492	chr10:93190492:T:A	rs7082239	T	A	A	Sox1_MA0870.1	15	0	-	0	0	.
chr10	93190515	93190516	chr10:93190516:G:A	rs12778014	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	93268341	93268342	chr10:93268342:C:T	rs7900460	C	T	T	Sox1_MA0870.1	28	0	-	0	0	.
chr10	93275745	93275746	chr10:93275746:T:C	rs787655	T	C	C	Sox1_MA0870.1	3	1	-	6.853059001824715	-0.04753066537251194	AACAAGAACAGTGTG
chr10	93445077	93445078	chr10:93445078:A:G	rs61867761	A	G	A	Sox1_MA0870.1	5	1	-	8.625721047604895	1.722556288957135	CTCAATATCAGTGTA
chr10	93459181	93459182	chr10:93459182:A:G	rs696998	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr10	93707889	93707890	chr10:93707890:G:A	rs10882314	G	A	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	93892349	93892350	chr10:93892350:C:T	rs6583920	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	94007357	94007358	chr10:94007358:T:G	rs891982361	T	G	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	94444380	94444381	chr10:94444381:A:G	rs942823935	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr10	94565919	94565920	chr10:94565920:G:A	rs7078478	G	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr10	95035529	95035530	chr10:95035530:A:G	rs11188148	A	G	A	Sox1_MA0870.1	10	1	+	6.431889866294233	10.999462021867005	GACAATTTCAATGTG
chr10	95456172	95456173	chr10:95456173:A:G	rs7074761	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr10	95524838	95524839	chr10:95524839:A:G	rs10882608	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	96331785	96331786	chr10:96331786:A:G	rs138421784	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr10	96803431	96803432	chr10:96803432:C:A	rs12265606	C	A	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	97037492	97037493	chr10:97037493:A:G	rs73320630	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr10	97652911	97652912	chr10:97652912:T:C	rs12569774	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr10	97652919	97652920	chr10:97652920:T:C	rs11189310	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr10	97882530	97882531	chr10:97882531:C:T	rs2297936	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr10	97898164	97898165	chr10:97898165:T:C	rs611527	T	C	C	Sox1_MA0870.1	13	1	+	4.333226577421175	2.15557127997018	ATCAATTCCACTGTA
chr10	98141542	98141543	chr10:98141543:A:G	rs80287982	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr10	98292706	98292707	chr10:98292707:A:T	rs11592082	A	T	A	Sox1_MA0870.1	30	0	-	0	0	.
chr10	98328504	98328505	chr10:98328505:T:C	rs4919210	T	C	T	Sox1_MA0870.1	6	1	-	5.293164564572024	3.754557871431305	TACACTAACAATGTG
chr10	98331824	98331825	chr10:98331825:A:G	rs7097807	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr10	98482351	98482352	chr10:98482352:T:G	rs35344122	T	G	T	Sox1_MA0870.1	4	1	-	4.918523143058452	2.9617102084332356	AACTATCACATTGTA
chr10	98515084	98515085	chr10:98515085:C:A	rs11189644	C	A	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	99844790	99844791	chr10:99844791:G:A	rs926104746	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	99994041	99994042	chr10:99994042:A:C	rs61871667	A	C	A	Sox1_MA0870.1	32	0	+	0	0	.
chr10	99994559	99994560	chr10:99994560:G:C	rs903761919	G	C	G	Sox1_MA0870.1	8	1	-	3.3138321594788103	-0.4566708334215275	GTCAATTGCGTTGTC
chr10	99994567	99994568	chr10:99994568:C:T	rs113444912	C	T	c	Sox1_MA0870.1	0	1	-	3.3138321594788103	4.655955302285564	GTCAATTGCGTTGTC
chr10	100515884	100515885	chr10:100515885:C:A	rs3750627	C	A	C	Sox1_MA0870.1	17	0	-	0	0	.
chr10	100717248	100717249	chr10:100717249:T:C	rs7908640	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr10	100832392	100832393	chr10:100832393:A:G	chr10:100832393:A:G	A	G	G	Sox1_MA0870.1	5	1	-	3.746270702360433	-3.1568940562873298	GCCCATGACAGTGTT
chr10	100832392	100832393	chr10:100832393:A:T	rs2495703	A	T	G	Sox1_MA0870.1	5	1	-	3.746270702360433	-1.2728593109500994	GCCCATGACAGTGTT
chr10	100839245	100839246	chr10:100839246:A:G	rs4917913	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr10	100873526	100873527	chr10:100873527:C:G	rs11190732	C	G	C	Sox1_MA0870.1	34	0	-	0	0	.
chr10	100960174	100960175	chr10:100960175:T:A	rs1037281400	T	A	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	101048469	101048470	chr10:101048470:C:A	rs1297071376	C	A	C	Sox1_MA0870.1	1	1	-	4.391827644985779	5.21283405321778	CGCAATCCCATTGCT
chr10	101287300	101287301	chr10:101287301:C:T	rs587854	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	101457388	101457389	chr10:101457389:A:G	rs9419907	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	101507081	101507082	chr10:101507082:C:T	rs9419919	C	T	T	Sox1_MA0870.1	5	1	-	7.945803977606929	9.829838722944153	AACAAGTACATTGTA
chr10	101601066	101601067	chr10:101601067:C:T	rs11191059	C	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr10	101618044	101618045	chr10:101618045:C:T	rs1329607311	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	102128104	102128105	chr10:102128105:C:G	rs78624786	C	G	c	Sox1_MA0870.1	-10	0	-	0	0	.
chr10	102300405	102300406	chr10:102300406:A:G	rs143828397	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr10	102435962	102435963	chr10:102435963:G:T	rs534454429	G	T	G	Sox1_MA0870.1	8	1	-	4.6955177139785995	-1.1976519403396138	CACACTTTCATTTTC
chr10	102569101	102569102	chr10:102569102:G:T	rs7091252	G	T	G	Sox1_MA0870.1	12	1	+	7.201935129221484	0.29318034990626385	CACTATAAGATTGTT
chr10	102668067	102668068	chr10:102668068:C:T	rs10883763	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr10	102767193	102767194	chr10:102767194:C:A	rs11191392	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr10	103012164	103012165	chr10:103012165:A:G	rs7071373	A	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr10	103509612	103509613	chr10:103509613:A:G	rs56336659	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr10	103540128	103540129	chr10:103540129:A:G	rs6584557	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	103659528	103659529	chr10:103659529:A:C	rs3781344	A	C	C	Sox1_MA0870.1	20	0	+	0	0	.
chr10	103911089	103911090	chr10:103911090:T:A	rs2984133	T	A	T	Sox1_MA0870.1	17	0	+	0	0	.
chr10	103911090	103911091	chr10:103911091:A:T	rs3752946	A	T	A	Sox1_MA0870.1	18	0	+	0	0	.
chr10	104197604	104197605	chr10:104197605:C:T	rs139252427	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	104544725	104544726	chr10:104544726:A:G	rs11818639	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	104662828	104662829	chr10:104662829:C:A	rs182415651	C	A	C	Sox1_MA0870.1	19	0	+	0	0	.
chr10	104734702	104734703	chr10:104734703:G:T	rs10884039	G	T	G	Sox1_MA0870.1	13	1	-	9.0048344112448	7.836963682106638	AACACTATCAGTGCA
chr10	104806323	104806324	chr10:104806324:A:G	rs2130519	A	G	A	Sox1_MA0870.1	9	1	+	3.6848152404689873	-3.2239395388462335	CACAATAGGATTATG
chr10	105132693	105132694	chr10:105132694:G:C	rs1377005	G	C	G	Sox1_MA0870.1	2	1	-	4.8381934460075655	-2.0705613333076567	GACAAATGCATTGGC
chr10	105133046	105133047	chr10:105133047:C:T	rs11192332	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	105308482	105308483	chr10:105308483:T:A	rs12250239	T	A	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr10	105308514	105308515	chr10:105308515:T:C	rs12250243	T	C	C	Sox1_MA0870.1	12	1	+	4.256539290987665	4.256539290987665	AACAAAGACATTTTT
chr10	105585846	105585847	chr10:105585847:T:C	rs75542667	T	C	.	Sox1_MA0870.1	6	1	-	6.721878348194755	5.183271655054036	ATCCATAGCAGTGTT
chr10	105648118	105648119	chr10:105648119:A:T	rs918319	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr10	106106458	106106459	chr10:106106459:G:A	rs79957699	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	106170302	106170303	chr10:106170303:G:C	rs1556371	G	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	106282341	106282342	chr10:106282342:C:T	rs10884289	C	T	T	Sox1_MA0870.1	14	1	-	3.6599487186445163	3.484617481577472	CACACCAACAGTGTG
chr10	106360431	106360432	chr10:106360432:A:G	rs821693	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	106740973	106740974	chr10:106740974:G:A	rs9325521	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr10	106837696	106837697	chr10:106837697:A:C	rs17121682	A	C	A	Sox1_MA0870.1	10	1	-	7.253406543611431	5.012281615047872	CACAATTATATTGCA
chr10	107059366	107059367	chr10:107059367:A:G	rs17195520	A	G	A	Sox1_MA0870.1	10	1	-	5.318090916820475	-1.4906061673158577	AAAAATAAGATTGTG
chr10	107075445	107075446	chr10:107075446:A:T	rs927983	A	T	T	Sox1_MA0870.1	9	1	+	8.808018194907987	1.8992634155927646	AACACTTTCATTGGA
chr10	107727349	107727350	chr10:107727350:T:C	rs72827083	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	107806282	107806283	chr10:107806283:T:G	rs72829230	T	G	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	107920324	107920325	chr10:107920325:G:A	rs11193801	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr10	108105560	108105561	chr10:108105561:C:G	rs76422103	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr10	108358706	108358707	chr10:108358707:T:G	rs118010168	T	G	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	108411327	108411328	chr10:108411328:C:A	rs1754618	C	A	C	Sox1_MA0870.1	18	0	+	0	0	.
chr10	108512149	108512150	chr10:108512150:T:C	rs11194139	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr10	108825754	108825755	chr10:108825755:G:T	rs11194275	G	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	108825793	108825794	chr10:108825794:T:C	rs12269405	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr10	109071516	109071517	chr10:109071517:G:T	rs73342462	G	T	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	109072889	109072890	chr10:109072890:G:A	rs75241430	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr10	109259592	109259593	chr10:109259593:G:A	rs11194519	G	A	G	Sox1_MA0870.1	10	1	+	7.376030359224748	2.8084582036519743	CTCAATTTCAGTGCT
chr10	109277513	109277514	chr10:109277514:T:C	rs7904172	T	C	-	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	109770795	109770796	chr10:109770796:T:C	rs1268466	T	C	A	Sox1_MA0870.1	25	0	+	0	0	.
chr10	110039852	110039853	chr10:110039853:T:C	rs12358885	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	110135082	110135083	chr10:110135083:C:A	rs115945554	C	A	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	110218964	110218965	chr10:110218965:T:C	rs1318388	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr10	110269776	110269777	chr10:110269777:A:G	rs941893217	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	110357541	110357542	chr10:110357542:T:C	rs17127275	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr10	110357555	110357556	chr10:110357556:G:A	rs117326941	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	110426247	110426248	chr10:110426248:T:A	chr10:110426248:T:A	T	A	T	Sox1_MA0870.1	11	1	+	5.0107197134183945	-1.892012973438438	AACCAAACCATTGCT
chr10	110676167	110676168	chr10:110676168:G:A	rs36029646	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	110817483	110817484	chr10:110817484:C:G	rs1980689	C	G	c	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	110823080	110823081	chr10:110823081:A:C	rs116165453	A	C	A	Sox1_MA0870.1	9	1	+	3.8479031317625387	-3.060851647552682	GAGAATGGCATTGCC
chr10	110858133	110858134	chr10:110858134:G:T	rs1306969461	G	T	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	110871497	110871498	chr10:110871498:T:C	rs118107800	T	C	T	Sox1_MA0870.1	13	1	+	5.107278629993074	2.92962333254208	ATCACTTGGAGTGTT
chr10	110993199	110993200	chr10:110993200:A:C	chr10:110993200:A:C	A	C	A	Sox1_MA0870.1	2	1	-	5.353556104043969	5.353556104043969	AATAAAATCATTGTT
chr10	111127712	111127713	chr10:111127713:C:G	rs12161672	C	G	C	Sox1_MA0870.1	14	1	-	3.593083731744791	3.80775641498149	AGCAACTCCATTGTG
chr10	111333549	111333550	chr10:111333550:A:T	rs73358858	A	T	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	111441057	111441058	chr10:111441058:A:G	rs4537696	A	G	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	111441072	111441073	chr10:111441073:C:A	rs4622189	C	A	C	Sox1_MA0870.1	2	1	+	5.268856056060191	-1.639898723255032	AACACTAACAATGCC
chr10	111720880	111720881	chr10:111720881:G:A	rs78281897	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	112169144	112169145	chr10:112169145:A:C	rs2803616	A	C	A	Sox1_MA0870.1	19	0	+	0	0	.
chr10	112304212	112304213	chr10:112304213:A:G	rs61431162	A	G	A	Sox1_MA0870.1	10	1	-	5.346089555335146	-1.462607528801187	AAAAATAGCATTGAG
chr10	112372886	112372887	chr10:112372887:A:T	rs2419620	A	T	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr10	112374516	112374517	chr10:112374517:A:T	rs3808920	A	T	A	Sox1_MA0870.1	14	1	-	6.252045569951131	4.351032245165983	ACCAAAATCAGTGTT
chr10	112428866	112428867	chr10:112428867:A:G	rs2256624	A	G	G	Sox1_MA0870.1	7	1	-	5.9624522633405626	5.974281315888936	AACAATCTCAGTGCC
chr10	112508035	112508036	chr10:112508036:C:T	rs11195977	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr10	112519657	112519658	chr10:112519658:G:A	rs67451905	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr10	112622965	112622966	chr10:112622966:T:C	rs140575978	T	C	t	Sox1_MA0870.1	23	0	-	0	0	.
chr10	112632001	112632002	chr10:112632002:A:G	rs76763495	A	G	A	Sox1_MA0870.1	13	1	-	10.629698408700094	8.452043111249099	TACAATTATATTGTT
chr10	112876511	112876512	chr10:112876512:T:C	rs28407328	T	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	113051071	113051072	chr10:113051072:T:C	rs115917913	T	C	T	Sox1_MA0870.1	11	1	+	5.515979413860897	0.5605844280505635	TACACTTCCCTTGTT
chr10	113317774	113317775	chr10:113317775:C:T	rs1904443	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	113355305	113355306	chr10:113355306:A:T	rs78217303	A	T	A	Sox1_MA0870.1	7	1	-	5.499863134620838	5.941453014705253	CACAATATCATGGGT
chr10	113424260	113424261	chr10:113424261:A:C	chr10:113424261:A:C	A	C	A	Sox1_MA0870.1	23	0	-	0	0	.
chr10	113456258	113456259	chr10:113456259:G:A	rs11196339	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	113475354	113475355	chr10:113475355:T:C	rs1472750	T	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr10	113557892	113557893	chr10:113557893:A:G	rs3781387	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	113927343	113927344	chr10:113927344:A:G	rs10885518	A	G	A	Sox1_MA0870.1	5	1	-	4.135318794839689	-2.767845963808069	GAAAATTGCAGTGTG
chr10	114010853	114010854	chr10:114010854:C:T	rs553886211	C	T	C	Sox1_MA0870.1	8	1	+	4.319956171195766	0.13834662455848468	CACAGTCACATTGTT
chr10	114019567	114019568	chr10:114019568:C:T	rs10787512	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr10	114027293	114027294	chr10:114027294:T:C	rs17091246	T	C	T	Sox1_MA0870.1	10	1	+	4.340258339881313	-2.4684387442550206	AACAATTCCATTAAG
chr10	114374264	114374265	chr10:114374265:T:C	rs149626496	T	C	T	Sox1_MA0870.1	10	1	+	3.7240042425223345	-3.0846928416139994	CACATTATCATTGGA
chr10	114430170	114430171	chr10:114430171:G:A	rs11812741	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr10	114442569	114442570	chr10:114442570:A:G	rs1885334	A	G	A	Sox1_MA0870.1	11	1	-	5.971525198886416	1.016130213076082	CTCACTGGCATTGAT
chr10	114603075	114603076	chr10:114603076:A:G	rs7094673	A	G	a	Sox1_MA0870.1	-9	0	+	0	0	.
chr10	114708987	114708988	chr10:114708988:C:T	rs703348	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	114749369	114749370	chr10:114749370:T:C	rs808312	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	115858177	115858178	chr10:115858178:A:G	rs114213299	A	G	A	Sox1_MA0870.1	4	1	+	5.62812499354076	-1.149453260629429	AGCAATCCCATTGCT
chr10	115858197	115858198	chr10:115858198:C:T	rs10787607	C	T	c	Sox1_MA0870.1	24	0	+	0	0	.
chr10	116045330	116045331	chr10:116045331:A:G	rs73379073	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr10	116099033	116099034	chr10:116099034:T:C	rs11197530	T	C	T	Sox1_MA0870.1	5	1	+	5.168798360881302	-1.7343663977664576	AACACTAACATTTCC
chr10	116099035	116099036	chr10:116099036:A:G	rs11197531	A	G	A	Sox1_MA0870.1	7	1	+	5.168798360881302	4.7718200330847935	AACACTAACATTTCC
chr10	116278864	116278865	chr10:116278865:G:A	rs143925316	G	A	G	Sox1_MA0870.1	8	1	-	6.360509894962674	2.1789003483253926	AACAATCCCATTGGA
chr10	116307696	116307697	chr10:116307697:C:T	rs11817803	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr10	116700063	116700064	chr10:116700064:C:A	rs10787716	C	A	C	Sox1_MA0870.1	32	0	-	0	0	.
chr10	116709119	116709120	chr10:116709120:G:C	rs10749227	G	C	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr10	117055544	117055545	chr10:117055545:G:T	rs1898351	G	T	G	Sox1_MA0870.1	2	1	-	6.1972198050296985	-0.7115349742855225	TACACTCACAGTGTT
chr10	117227237	117227238	chr10:117227238:T:C	rs17095936	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	117324528	117324529	chr10:117324529:T:C	rs2794435	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	118374409	118374410	chr10:118374410:G:T	rs10886226	G	T	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	118469577	118469578	chr10:118469578:T:C	rs11198439	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr10	118568617	118568618	chr10:118568618:T:C	rs2420483	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr10	118611150	118611151	chr10:118611151:T:A	rs11198509	T	A	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	118857932	118857933	chr10:118857933:A:G	rs7916622	A	G	a	Sox1_MA0870.1	6	1	-	3.9062779231733495	-0.509872363945552	AACAAGTGCATTGGA
chr10	118871096	118871097	chr10:118871097:T:C	rs116203520	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr10	118962932	118962933	chr10:118962933:T:C	rs12571706	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr10	118999057	118999058	chr10:118999058:A:T	rs11598851	A	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	119067826	119067827	chr10:119067827:T:C	rs80234225	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr10	119133266	119133267	chr10:119133267:G:A	rs76653679	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	119161075	119161076	chr10:119161076:T:C	rs10749291	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr10	119178074	119178075	chr10:119178075:C:T	chr10:119178075:C:T	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr10	119218366	119218367	chr10:119218367:A:C	chr10:119218367:A:C	A	C	A	Sox1_MA0870.1	19	0	-	0	0	.
chr10	119218402	119218403	chr10:119218403:A:C	chr10:119218403:A:C	A	C	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	119267806	119267807	chr10:119267807:C:T	rs79383846	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	119316605	119316606	chr10:119316606:G:A	rs150767262	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr10	119342246	119342247	chr10:119342247:T:C	rs291974	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr10	119342255	119342256	chr10:119342256:T:G	rs910169376	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	119356105	119356106	chr10:119356106:C:T	rs12770361	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr10	119480966	119480967	chr10:119480967:C:T	rs11198958	C	T	C	Sox1_MA0870.1	0	1	+	8.792412588052683	8.090035830905203	CCCACTGCCATTGTT
chr10	119480980	119480981	chr10:119480981:T:C	rs36097989	T	C	T	Sox1_MA0870.1	14	1	+	8.792412588052683	7.281403183571278	CCCACTGCCATTGTT
chr10	119480982	119480983	chr10:119480983:C:G	rs2039486	C	G	C	Sox1_MA0870.1	16	0	+	0	0	.
chr10	119693512	119693513	chr10:119693513:G:C	rs536894062	G	C	G	Sox1_MA0870.1	32	0	-	0	0	.
chr10	119870766	119870767	chr10:119870767:C:T	rs78527421	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr10	119933395	119933396	chr10:119933396:A:C	rs2901218	A	C	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr10	120012067	120012068	chr10:120012068:C:A	rs1889442	C	A	C	Sox1_MA0870.1	6	1	+	4.6438160045108	10.033015007344002	AACAAACCCAGTGTT
chr10	120265938	120265939	chr10:120265939:A:G	rs11199251	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	120303358	120303359	chr10:120303359:G:A	rs2901224	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	120638121	120638122	chr10:120638122:T:C	rs10886732	T	C	T	Sox1_MA0870.1	6	1	-	3.46310842080541	1.9245017276646914	ATCACCAGCATTGTG
chr10	120923296	120923297	chr10:120923297:A:G	rs11199650	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr10	120990034	120990035	chr10:120990035:A:C	rs11199690	A	C	A	Sox1_MA0870.1	16	0	-	0	0	.
chr10	120998000	120998001	chr10:120998001:G:A	rs146792965	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr10	121097246	121097247	chr10:121097247:T:C	rs78645674	T	C	.	Sox1_MA0870.1	7	1	+	6.301454910661864	6.313283963210237	CTCAATATCATCGTC
chr10	121158994	121158995	chr10:121158995:A:G	rs73366943	A	G	G	Sox1_MA0870.1	9	1	+	6.690262262209165	-0.2184925171060551	AACCATGTCAGTGTG
chr10	121289749	121289750	chr10:121289750:T:C	rs10886902	T	C	C	Sox1_MA0870.1	1	1	-	6.707561774384807	2.6092711189916655	AACACAAGCATTGGT
chr10	121334549	121334550	chr10:121334550:C:T	rs75733246	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr10	121406811	121406812	chr10:121406812:C:T	rs1863747	C	T	T	Sox1_MA0870.1	32	0	-	0	0	.
chr10	121445550	121445551	chr10:121445551:T:G	rs7918409	T	G	T	Sox1_MA0870.1	1	1	-	6.376443723403252	2.607303338558752	GACAATTGCATTTTG
chr10	121514547	121514548	chr10:121514548:C:A	rs3135763	C	A	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	121539782	121539783	chr10:121539783:G:A	rs2912771	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	121615423	121615424	chr10:121615424:G:T	rs10633692	G	T	G	Sox1_MA0870.1	7	1	-	4.961806893036739	5.39156772057278	AACAAAACCAGTGAG
chr10	121615428	121615429	chr10:121615429:G:T	rs28555429	G	T	G	Sox1_MA0870.1	2	1	-	4.961806893036739	-1.946947886278481	AACAAAACCAGTGAG
chr10	121773449	121773450	chr10:121773450:C:T	rs10886979	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	121775043	121775044	chr10:121775044:T:C	rs960575413	T	C	T	Sox1_MA0870.1	10	1	+	4.551612041826753	-2.2570850423095807	GACAGTTACATTGCA
chr10	121842050	121842051	chr10:121842051:C:T	rs10886995	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	122047724	122047725	chr10:122047725:C:T	rs3981027	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr10	122112146	122112147	chr10:122112147:T:C	rs78152833	T	C	T	Sox1_MA0870.1	11	1	+	4.1156926697045995	-0.8397023161057341	ATCTATAGCAGTGCT
chr10	122249411	122249412	chr10:122249412:T:C	rs2273794	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr10	122256193	122256194	chr10:122256194:C:T	rs10887112	C	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr10	122336693	122336694	chr10:122336694:C:T	rs3817284	C	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	122475670	122475671	chr10:122475671:G:A	rs79057333	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr10	122475709	122475710	chr10:122475710:T:G	rs72834453	T	G	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	122514154	122514155	chr10:122514155:C:T	rs2293871	C	T	T	Sox1_MA0870.1	17	0	-	0	0	.
chr10	122619751	122619752	chr10:122619752:A:G	rs113681994	A	G	A	Sox1_MA0870.1	0	1	-	6.0129910904416075	6.7153678475890874	TGCACTGACATTGCT
chr10	123011338	123011339	chr10:123011339:C:G	rs11592612	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	123117955	123117956	chr10:123117956:C:T	rs114561620	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr10	123149301	123149302	chr10:123149302:C:T	rs2278506	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	123237189	123237190	chr10:123237190:G:A	rs11248466	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr10	123237232	123237233	chr10:123237233:T:C	rs11248467	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	123413046	123413047	chr10:123413047:C:A	rs150157497	C	A	C	Sox1_MA0870.1	23	0	+	0	0	.
chr10	123773097	123773098	chr10:123773098:G:A	rs117472226	G	A	-	Sox1_MA0870.1	23	0	-	0	0	.
chr10	123850976	123850977	chr10:123850977:C:T	rs28584696	C	T	C	Sox1_MA0870.1	2	1	+	3.774153929748955	-3.134600849566266	AACGCTTCCATTGCC
chr10	123856352	123856353	chr10:123856353:G:A	rs876814	G	A	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr10	123913470	123913471	chr10:123913471:A:C	rs77132776	A	C	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	123940891	123940892	chr10:123940892:C:T	rs28690234	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr10	124110969	124110970	chr10:124110970:A:G	rs925307433	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr10	124164510	124164511	chr10:124164511:C:T	rs36140936	C	T	T	Sox1_MA0870.1	0	1	+	3.7260607764752947	3.0236840193278147	CTCAATAGCTTTGCT
chr10	124201080	124201081	chr10:124201081:C:T	rs879119690	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	124216371	124216372	chr10:124216372:C:G	rs36164899	C	G	C	Sox1_MA0870.1	25	0	-	0	0	.
chr10	124216395	124216396	chr10:124216396:T:C	rs967969304	T	C	T	Sox1_MA0870.1	1	1	-	6.710662817436081	2.612372162042941	CACACTGGCAGTGGT
chr10	124268487	124268488	chr10:124268488:T:C	rs4506599	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr10	124304156	124304157	chr10:124304157:G:T	rs7098566	G	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr10	124306992	124306993	chr10:124306993:C:T	rs114870889	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	124420981	124420982	chr10:124420982:T:C	rs11817297	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr10	124547107	124547108	chr10:124547108:C:T	rs11245281	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	124573883	124573884	chr10:124573884:C:T	rs10901766	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr10	124575800	124575801	chr10:124575801:C:A	rs4962385	C	A	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr10	124575824	124575825	chr10:124575825:G:T	rs12416284	G	T	G	Sox1_MA0870.1	14	1	+	4.037195921388795	5.762878009106899	CCCAAAGGCATTGTG
chr10	124757060	124757061	chr10:124757061:A:G	rs4962696	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	124879922	124879923	chr10:124879923:G:C	rs10794185	G	C	-	Sox1_MA0870.1	0	1	-	7.285139475074901	7.179313680823128	CGCAATTTCATTGCC
chr10	125065281	125065282	chr10:125065282:C:A	rs61870346	C	A	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr10	125065291	125065292	chr10:125065292:G:C	rs112683036	G	C	G	Sox1_MA0870.1	5	1	+	3.5141329109946504	3.5141329109946504	AACAAGAGCCTTGTT
chr10	125118900	125118901	chr10:125118901:C:T	rs76422588	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr10	125119897	125119898	chr10:125119898:T:C	rs116498738	T	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr10	125476050	125476051	chr10:125476051:T:C	rs79246833	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr10	125604149	125604150	chr10:125604150:A:C	rs77602131	A	C	A	Sox1_MA0870.1	11	1	-	3.6408772821067235	-3.2618554047501087	AACCCTGCCATTGAG
chr10	125628136	125628137	chr10:125628137:T:C	rs1379542979	T	C	T	Sox1_MA0870.1	9	1	-	6.2511386707479115	-0.6576161085673095	CACACTTGCATTTTT
chr10	125692479	125692480	chr10:125692480:C:T	rs77688920	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr10	126056259	126056260	chr10:126056260:A:C	rs1710293	A	C	C	Sox1_MA0870.1	33	0	-	0	0	.
chr10	126092908	126092909	chr10:126092909:C:T	rs115974230	C	T	C	Sox1_MA0870.1	7	1	-	4.593324926531164	4.990303254327673	AGCAATAGCCTTGTG
chr10	126215341	126215342	chr10:126215342:G:C	rs12261060	G	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	126352269	126352270	chr10:126352270:T:C	rs11597735	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr10	126423482	126423483	chr10:126423483:C:T	rs35124467	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	126733108	126733109	chr10:126733109:T:C	rs116490622	T	C	T	Sox1_MA0870.1	13	1	+	7.487436019302892	5.309780721851898	AAAACTTGCATTGTT
chr10	126908931	126908932	chr10:126908932:C:G	rs139057052	C	G	C	Sox1_MA0870.1	26	0	-	0	0	.
chr10	126950473	126950474	chr10:126950474:T:C	rs934756832	T	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	127038803	127038804	chr10:127038804:G:A	rs4750895	G	A	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	127060959	127060960	chr10:127060960:G:T	rs7909730	G	T	g	Sox1_MA0870.1	-9	0	-	0	0	.
chr10	127090168	127090169	chr10:127090169:T:A	rs56249335	T	A	T	Sox1_MA0870.1	27	0	-	0	0	.
chr10	127300912	127300913	chr10:127300913:G:A	rs77110404	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr10	127371167	127371168	chr10:127371168:C:A	rs7914006	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr10	127388737	127388738	chr10:127388738:A:T	rs74590897	A	T	A	Sox1_MA0870.1	2	1	+	5.798247027179658	5.798247027179658	CAAAATGACAGTGTT
chr10	127549086	127549087	chr10:127549087:T:G	rs7894110	T	G	G	Sox1_MA0870.1	25	0	-	0	0	.
chr10	127681014	127681015	chr10:127681015:C:T	rs1892183	C	T	T	Sox1_MA0870.1	14	1	-	4.033870348917187	3.858539111850143	CACAATTGGAGTGAG
chr10	127681040	127681041	chr10:127681041:T:C	rs1892184	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr10	127942937	127942938	chr10:127942938:C:G	chr10:127942938:C:G	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr10	128140568	128140569	chr10:128140569:G:A	rs6482658	G	A	A	Sox1_MA0870.1	14	1	-	5.708941327104206	7.219950731585611	GTCAATAACAGTGGC
chr10	128296099	128296100	chr10:128296100:G:A	rs11016163	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr10	128306486	128306487	chr10:128306487:T:C	rs2771229	T	C	C	Sox1_MA0870.1	7	1	-	4.3896334971013715	3.992655169304864	TACACAAACAGTGCT
chr10	128313759	128313760	chr10:128313760:C:G	rs2799401	C	G	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr10	128317169	128317170	chr10:128317170:A:T	rs1613616	A	T	T	Sox1_MA0870.1	1	1	+	5.061919000618223	1.7846347534570821	GACAATCACAGTGCC
chr10	128323016	128323017	chr10:128323017:G:C	rs2077469	G	C	G	Sox1_MA0870.1	10	1	+	3.893463810940831	-0.6741083446319414	CACTCTTGCAGTGTC
chr10	128339213	128339214	chr10:128339214:T:A	rs1754235	T	A	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr10	128377497	128377498	chr10:128377498:T:C	rs11016203	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr10	128398965	128398966	chr10:128398966:A:T	rs11016230	A	T	A	Sox1_MA0870.1	26	0	+	0	0	.
chr10	128473820	128473821	chr10:128473821:A:G	rs12411816	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr10	128546715	128546716	chr10:128546716:T:A	rs12258943	T	A	T	Sox1_MA0870.1	26	0	-	0	0	.
chr10	128872088	128872089	chr10:128872089:A:C	rs76326952	A	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr10	128980368	128980369	chr10:128980369:T:C	rs56246971	T	C	C	Sox1_MA0870.1	3	1	-	7.347976483822652	0.44738681662542745	CCCAATTCCAGTGTG
chr10	129061801	129061802	chr10:129061802:G:A	rs77864537	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr10	129320350	129320351	chr10:129320351:T:C	rs2542637	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr10	129321957	129321958	chr10:129321958:A:C	rs3095757	A	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr10	129323544	129323545	chr10:129323545:C:T	rs72831461	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr10	129510307	129510308	chr10:129510308:C:G	rs1537691	C	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr10	129726562	129726563	chr10:129726563:G:A	rs6482753	G	A	G	Sox1_MA0870.1	6	1	+	5.367319775009651	6.905926468150369	AACAGTGGCATTGGT
chr10	129757378	129757379	chr10:129757379:C:T	chr10:129757379:C:T	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr10	129956177	129956178	chr10:129956178:C:T	rs77059422	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr10	130172401	130172402	chr10:130172402:G:C	rs1016374	G	C	G	Sox1_MA0870.1	20	0	-	0	0	.
chr10	130404891	130404892	chr10:130404892:T:A	rs10430608	T	A	A	Sox1_MA0870.1	6	1	-	9.037464790306037	8.064416074591737	AACATTAGCATTGTC
chr10	130493703	130493704	chr10:130493704:A:G	rs4751209	A	G	a	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	130636218	130636219	chr10:130636219:A:C	rs1176472	A	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr10	130750519	130750520	chr10:130750520:C:G	rs10829786	C	G	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr10	130861598	130861599	chr10:130861599:A:C	rs10764993	A	C	A	Sox1_MA0870.1	28	0	+	0	0	.
chr10	130864407	130864408	chr10:130864408:A:G	rs35299867	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr10	130864409	130864410	chr10:130864410:C:T	rs34076100	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr10	131005686	131005687	chr10:131005687:T:C	rs11017653	T	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr10	131017691	131017692	chr10:131017692:C:T	rs76047473	C	T	-	Sox1_MA0870.1	11	1	+	4.8744105036715695	9.829805489481904	ACCACTATCATCGTG
chr10	131071487	131071488	chr10:131071488:G:T	rs61864626	G	T	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	131088792	131088793	chr10:131088793:G:A	rs75923096	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr10	131184144	131184145	chr10:131184145:G:A	rs150979119	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr10	131184155	131184156	chr10:131184156:T:C	rs1465845	T	C	T	Sox1_MA0870.1	5	1	+	5.42258344088113	-1.4805813177666298	CACACTTGGAGTGTG
chr10	131210920	131210921	chr10:131210921:C:T	rs10458713	C	T	C	Sox1_MA0870.1	2	1	+	4.602404540512772	-2.3063502388024486	CACTATTTCATCGTT
chr10	131210939	131210940	chr10:131210940:C:T	rs10741246	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr10	131291023	131291024	chr10:131291024:G:C	rs1530066	G	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr10	131326697	131326698	chr10:131326698:A:G	rs4609515	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr10	131358004	131358005	chr10:131358005:T:G	rs6482877	T	G	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr10	131461424	131461425	chr10:131461425:A:G	rs6482890	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr10	131478300	131478301	chr10:131478301:G:T	rs10830012	G	T	T	Sox1_MA0870.1	12	1	+	5.1943885454082155	-1.7143662339070054	ATAAATATCATTGTA
chr10	131478303	131478304	chr10:131478304:T:C	rs10830013	T	C	T	Sox1_MA0870.1	15	0	+	0	0	.
chr10	131674180	131674181	chr10:131674181:C:G	rs12573695	C	G	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr10	131731263	131731264	chr10:131731264:T:C	rs111237624	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr10	131812477	131812478	chr10:131812478:G:A	rs118149454	G	A	g	Sox1_MA0870.1	28	0	+	0	0	.
chr10	131869231	131869232	chr10:131869232:C:T	rs879043106	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr10	132040121	132040122	chr10:132040122:G:A	rs7088161	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr10	132044743	132044744	chr10:132044744:C:T	rs7919591	C	T	C	Sox1_MA0870.1	6	1	+	6.175950077303121	10.59210036442202	GACAATCGCAGTGCT
chr10	132154820	132154821	chr10:132154821:C:A	rs56227733	C	A	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr10	132175869	132175870	chr10:132175870:A:G	rs4880339	A	G	A	Sox1_MA0870.1	5	1	-	5.857147370182016	-1.046017388465743	AACAATTTCACTGGT
chr10	132470436	132470437	chr10:132470437:G:A	rs7906753	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr10	132489769	132489770	chr10:132489770:T:C	rs11146398	T	C	t	Sox1_MA0870.1	30	0	+	0	0	.
chr10	132748421	132748422	chr10:132748422:C:T	rs11146497	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr10	132803685	132803686	chr10:132803686:T:C	rs2804019	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr10	132855958	132855959	chr10:132855959:T:C	rs9419242	T	C	T	Sox1_MA0870.1	11	1	+	5.517756207404862	0.5623612215945272	CACACTTCCAGTGGG
chr10	132867588	132867589	chr10:132867589:C:T	rs4880454	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr10	132878605	132878606	chr10:132878606:A:G	rs4880459	A	G	G	Sox1_MA0870.1	9	1	+	4.400944740324901	-2.5078100389903204	GAGAATAACATTGAG
chr10	132940396	132940397	chr10:132940397:A:G	rs12251600	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr10	133105347	133105348	chr10:133105348:C:T	rs11101932	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr10	133105358	133105359	chr10:133105359:G:A	rs59572060	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr10	133105367	133105368	chr10:133105368:C:T	rs142084259	C	T	C	Sox1_MA0870.1	10	1	-	3.0746778857467256	-1.492894269826047	AACACTTGCAGAGCT
chr10	133109148	133109149	chr10:133109149:A:G	rs4370854	A	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr10	133179428	133179429	chr10:133179429:C:T	rs72859872	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr11	226185	226186	chr11:226186:A:G	rs4980333	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr11	297056	297057	chr11:297057:A:C	rs12286628	A	C	A	Sox1_MA0870.1	3	1	+	4.141788789100557	-0.9439761359376189	CACACTGCCCTTGTC
chr11	370830	370831	chr11:370831:T:C	rs11246135	T	C	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr11	387449	387450	chr11:387450:T:G	rs10902147	T	G	t	Sox1_MA0870.1	21	0	-	0	0	.
chr11	690461	690462	chr11:690462:A:C	rs10902192	A	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr11	690471	690472	chr11:690472:T:C	rs10794331	T	C	t	Sox1_MA0870.1	28	0	+	0	0	.
chr11	723428	723429	chr11:723429:C:T	rs4078520	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	1017595	1017596	chr11:1017596:T:G	rs201522029	T	G	-	Sox1_MA0870.1	-19	0	+	0	0	.
chr11	1078670	1078671	chr11:1078671:A:C	rs113264565	A	C	a	Sox1_MA0870.1	6	1	+	2.927673432317742	-2.4615255705154606	AACACTAACCGTGCC
chr11	1168141	1168142	chr11:1168142:G:C	rs28464760	G	C	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	1357939	1357940	chr11:1357940:T:G	rs6578279	T	G	g	Sox1_MA0870.1	4	1	-	5.147809864088921	3.1909969294637044	CACAAAAACAGTGCA
chr11	1362976	1362977	chr11:1362977:A:G	rs6421029	A	G	g	Sox1_MA0870.1	9	1	+	4.587110781294006	-2.321643998021214	GTCACTTACAGTGAT
chr11	1515298	1515299	chr11:1515299:G:T	rs28509294	G	T	T	Sox1_MA0870.1	12	1	+	6.864736729645128	-0.04401804967009282	GACAATACCTTTGCT
chr11	1568469	1568470	chr11:1568470:T:A	rs115277124	T	A	T	Sox1_MA0870.1	8	1	+	11.908145553765367	10.196585446084436	CACAATAGTATTGTT
chr11	1603730	1603731	chr11:1603731:T:C	rs56814154	T	C	t	Sox1_MA0870.1	21	0	+	0	0	.
chr11	1615792	1615793	chr11:1615793:C:A	rs11036472	C	A	c	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	1640096	1640097	chr11:1640097:C:T	rs78651552	C	T	c	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	1693233	1693234	chr11:1693234:G:A	rs16927505	G	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr11	1726457	1726458	chr11:1726458:T:G	rs147046015	T	G	T	Sox1_MA0870.1	11	1	+	5.168798360881302	-1.7339343259755307	AATACTAACATTGCC
chr11	1785991	1785992	chr11:1785992:C:T	rs74050642	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	1851561	1851562	chr11:1851562:G:A	rs689363	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	1908771	1908772	chr11:1908772:G:T	rs758647496	G	T	g	Sox1_MA0870.1	21	0	-	0	0	.
chr11	2133951	2133952	chr11:2133952:C:G	rs113257255	C	G	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	2219509	2219510	chr11:2219510:C:T	rs190061556	C	T	C	Sox1_MA0870.1	14	1	-	3.1571445965962366	2.9818133595291925	GACACCAGCAGTGTG
chr11	2360399	2360400	chr11:2360400:G:C	rs150188387	G	C	g	Sox1_MA0870.1	25	0	+	0	0	.
chr11	2451513	2451514	chr11:2451514:C:G	rs34273392	C	G	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr11	2474189	2474190	chr11:2474190:C:G	rs3815063	C	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	2510673	2510674	chr11:2510674:G:T	rs73419549	G	T	G	Sox1_MA0870.1	13	1	-	4.24564287683768	3.077772147699515	AACAACACCAGTGCG
chr11	2520883	2520884	chr11:2520884:C:T	rs369502793	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	2537409	2537410	chr11:2537410:G:T	rs58978657	G	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr11	2549614	2549615	chr11:2549615:G:T	rs12292841	G	T	G	Sox1_MA0870.1	21	0	+	0	0	.
chr11	2667543	2667544	chr11:2667544:T:G	rs7120573	T	G	T	Sox1_MA0870.1	3	1	-	9.619524203063268	4.533759278025093	GACAATATCAGTGCA
chr11	2822445	2822446	chr11:2822446:T:C	rs11606985	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr11	2833283	2833284	chr11:2833284:C:G	rs234862	C	G	G	Sox1_MA0870.1	14	1	-	5.215749784849969	5.430422468086668	GACTCTGCCATTGTG
chr11	2844909	2844910	chr11:2844910:C:T	rs367735357	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr11	3007039	3007040	chr11:3007040:A:G	rs7950766	A	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr11	3052419	3052420	chr11:3052420:T:C	rs11827189	T	C	T	Sox1_MA0870.1	6	1	-	5.530075865147298	3.9914691720065796	TACAATAACATTAAT
chr11	3132192	3132193	chr11:3132193:T:C	rs4758469	T	C	t	Sox1_MA0870.1	4	1	-	4.738592690204388	-2.038985563965799	TTCCATATCAGTGTT
chr11	3207242	3207243	chr11:3207243:T:A	rs11025941	T	A	T	Sox1_MA0870.1	21	0	+	0	0	.
chr11	3233216	3233217	chr11:3233217:T:C	rs117300336	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr11	3567782	3567783	chr11:3567783:T:C	rs9735720	T	C	N	Sox1_MA0870.1	29	0	-	0	0	.
chr11	3579644	3579645	chr11:3579645:C:T	rs11028236	C	T	-	Sox1_MA0870.1	4	1	+	5.0027679051542195	0.1820025856092482	TACACTGCCATCGTA
chr11	3579656	3579657	chr11:3579657:T:C	rs11028237	T	C	-	Sox1_MA0870.1	16	0	+	0	0	.
chr11	3685045	3685046	chr11:3685046:G:A	rs4261313	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr11	3801342	3801343	chr11:3801343:T:G	rs10767606	T	G	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	3904674	3904675	chr11:3904675:T:C	rs13328911	T	C	T	Sox1_MA0870.1	0	1	-	4.65856185043316	3.316438707626407	ACCACTACCCTTGTT
chr11	3939524	3939525	chr11:3939525:A:G	rs61897166	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr11	3947373	3947374	chr11:3947374:C:T	rs116531229	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr11	4184752	4184753	chr11:4184753:G:A	rs11031240	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	4872264	4872265	chr11:4872265:A:G	rs12806014	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr11	5102271	5102272	chr11:5102272:A:G	rs10837341	A	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	5355109	5355110	chr11:5355110:T:G	rs2647599	T	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	5364314	5364315	chr11:5364315:C:A	rs2736552	C	A	A	Sox1_MA0870.1	7	1	+	5.494281535930361	5.924042363466403	CACAAAACCATTGGA
chr11	5619266	5619267	chr11:5619267:T:C	rs7109361	T	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	5631742	5631743	chr11:5631743:G:A	rs2342381	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	5692306	5692307	chr11:5692307:C:A	rs16934531	C	A	A	Sox1_MA0870.1	12	1	-	6.237719883161665	-0.6710348961535555	CTCAAAATCATTGTC
chr11	5891567	5891568	chr11:5891568:G:A	rs139488032	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr11	5957108	5957109	chr11:5957109:A:C	rs7928434	A	C	C	Sox1_MA0870.1	3	1	+	4.0965004833974525	-0.989264441640722	CACAATTCCATTCCA
chr11	5957112	5957113	chr11:5957113:C:G	rs7942132	C	G	G	Sox1_MA0870.1	7	1	+	4.0965004833974525	4.129282983136987	CACAATTCCATTCCA
chr11	5982231	5982232	chr11:5982232:C:T	rs1006302563	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	6096459	6096460	chr11:6096460:T:C	rs113836384	T	C	T	Sox1_MA0870.1	5	1	+	3.6481890183879773	-3.2549757402597823	CAGAATAACAGTGCC
chr11	6128165	6128166	chr11:6128166:T:G	rs11040763	T	G	T	Sox1_MA0870.1	15	0	+	0	0	.
chr11	6306692	6306693	chr11:6306693:G:A	rs10500667	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr11	6438795	6438796	chr11:6438796:C:A	rs10500671	C	A	A	Sox1_MA0870.1	32	0	+	0	0	.
chr11	6577269	6577270	chr11:6577270:G:A	chr11:6577270:G:A	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	6577305	6577306	chr11:6577306:C:T	chr11:6577306:C:T	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr11	6602687	6602688	chr11:6602688:G:A	rs11606458	G	A	G	Sox1_MA0870.1	14	1	-	3.999244557167024	5.510253961648429	CCCATTACCATTGTC
chr11	6602692	6602693	chr11:6602693:T:C	rs80354404	T	C	T	Sox1_MA0870.1	9	1	-	3.999244557167024	-2.909510222148195	CCCATTACCATTGTC
chr11	6602950	6602951	chr11:6602951:T:C	rs4758438	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	6609310	6609311	chr11:6609311:C:T	rs140322345	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr11	6612912	6612913	chr11:6612913:T:C	chr11:6612913:T:C	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr11	6612917	6612918	chr11:6612918:C:T	rs7488	C	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr11	6612957	6612958	chr11:6612958:G:A	rs7487	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	6626699	6626700	chr11:6626700:C:T	rs34782445	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	6677175	6677176	chr11:6677176:T:C	rs142644037	T	C	T	Sox1_MA0870.1	3	1	-	12.480533803016186	5.579944135818962	TACAATTCCATTGTA
chr11	6707622	6707623	chr11:6707623:C:T	rs12361973	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr11	6747423	6747424	chr11:6747424:A:G	rs10839610	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr11	7020359	7020360	chr11:7020360:T:C	rs191074046	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr11	7186592	7186593	chr11:7186593:T:C	rs2135871	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	7309472	7309473	chr11:7309473:A:G	rs11041306	A	G	A	Sox1_MA0870.1	5	1	-	9.771092826499403	2.867928067851645	GACAATGACATTGAG
chr11	7367476	7367477	chr11:7367477:T:C	rs7930845	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr11	7419158	7419159	chr11:7419159:G:A	rs11041365	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr11	7419166	7419167	chr11:7419167:T:C	rs11041366	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr11	7486719	7486720	chr11:7486720:T:C	rs71461818	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr11	7909830	7909831	chr11:7909831:T:G	rs539539434	T	G	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	7987223	7987224	chr11:7987224:C:T	rs72847449	C	T	C	Sox1_MA0870.1	13	1	+	5.033193506056779	7.210848803507773	GACTATTTCAGTGCT
chr11	7987224	7987225	chr11:7987225:T:C	rs116043166	T	C	T	Sox1_MA0870.1	14	1	+	5.033193506056779	3.5221841015753745	GACTATTTCAGTGCT
chr11	7987224	7987225	chr11:7987225:T:G	chr11:7987225:T:G	T	G	T	Sox1_MA0870.1	14	1	+	5.033193506056779	3.3075114183386756	GACTATTTCAGTGCT
chr11	8004702	8004703	chr11:8004703:C:G	rs34046098	C	G	C	Sox1_MA0870.1	6	1	-	5.053550480588824	1.2029581708963404	ACCAAAGTCATTGTA
chr11	8035231	8035232	chr11:8035232:A:C	rs4483583	A	C	A	Sox1_MA0870.1	20	0	-	0	0	.
chr11	8035251	8035252	chr11:8035252:G:A	rs2178152	G	A	A	Sox1_MA0870.1	0	1	-	3.72537828768158	3.023001530534099	CGCAAATCCAGTGTT
chr11	8051688	8051689	chr11:8051689:C:T	rs7949880	C	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr11	8055760	8055761	chr11:8055761:C:T	rs58666270	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	8065367	8065368	chr11:8065368:T:C	rs55961435	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr11	8350952	8350953	chr11:8350953:G:A	rs6578961	G	A	G	Sox1_MA0870.1	8	1	-	5.422972096704473	1.2413625500671914	ATCCCTGTCATTGTT
chr11	8566847	8566848	chr11:8566848:T:C	rs531255716	T	C	t	Sox1_MA0870.1	-10	0	+	0	0	.
chr11	8618446	8618447	chr11:8618447:G:C	rs4929947	G	C	G	Sox1_MA0870.1	15	0	+	0	0	.
chr11	8658536	8658537	chr11:8658537:G:A	rs112096207	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr11	8658549	8658550	chr11:8658550:C:T	rs148939556	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr11	8690625	8690626	chr11:8690626:C:A	rs75868796	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	8767617	8767618	chr11:8767618:G:C	rs56210063	G	C	G	Sox1_MA0870.1	8	1	-	6.328216182126891	2.557713189226553	ACCACTGTCATTGCC
chr11	8851426	8851427	chr11:8851427:T:C	rs36100955	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	8868082	8868083	chr11:8868083:T:C	rs2653567	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	8912305	8912306	chr11:8912306:T:G	rs2742519	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	8912342	8912343	chr11:8912343:T:G	rs79634295	T	G	T	Sox1_MA0870.1	25	0	+	0	0	.
chr11	8919155	8919156	chr11:8919156:G:T	rs3763914	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	8988458	8988459	chr11:8988459:A:C	rs2568047	A	C	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr11	9007044	9007045	chr11:9007045:A:G	rs77848559	A	G	A	Sox1_MA0870.1	4	1	+	4.663509018751704	-2.114069235418484	TACAATATGGTTGTT
chr11	9023219	9023220	chr11:9023220:G:A	rs932287	G	A	A	Sox1_MA0870.1	20	0	-	0	0	.
chr11	9150884	9150885	chr11:9150885:A:G	rs10769995	A	G	A	Sox1_MA0870.1	6	1	-	5.3384032309969225	0.9222529438780215	ATCAATTAAAGTGTT
chr11	9280264	9280265	chr11:9280265:T:C	rs11042259	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr11	9648856	9648857	chr11:9648857:G:C	rs11042463	G	C	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr11	9675934	9675935	chr11:9675935:T:G	rs4997559	T	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr11	9714385	9714386	chr11:9714386:G:A	rs1874476	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr11	9747011	9747012	chr11:9747012:T:G	rs6483654	T	G	G	Sox1_MA0870.1	13	1	+	6.516982199376219	2.874434472739147	TACCATAATATTGTT
chr11	9747014	9747015	chr11:9747015:C:T	rs6483655	C	T	T	Sox1_MA0870.1	16	0	+	0	0	.
chr11	9909056	9909057	chr11:9909057:G:T	rs17271223	G	T	G	Sox1_MA0870.1	14	1	-	6.6168332468015745	6.226829326497832	AACACAATCATTGCC
chr11	10013482	10013483	chr11:10013483:C:T	rs72858804	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr11	10162472	10162473	chr11:10162473:T:C	rs2278630	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr11	10207299	10207300	chr11:10207300:G:A	rs1867135	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	10244329	10244330	chr11:10244330:G:A	rs72850420	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr11	10307195	10307196	chr11:10307196:G:T	rs35440828	G	T	G	Sox1_MA0870.1	2	1	-	7.868492802093763	0.9597380227785408	GACAATATAATTGCT
chr11	10439926	10439927	chr11:10439927:G:C	rs11042804	G	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr11	10481892	10481893	chr11:10481893:G:A	rs79076848	G	A	A	Sox1_MA0870.1	32	0	-	0	0	.
chr11	10481903	10481904	chr11:10481904:G:A	rs73409956	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr11	10592531	10592532	chr11:10592532:T:G	rs16908009	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	10592557	10592558	chr11:10592558:T:C	rs369498402	T	C	T	Sox1_MA0870.1	14	1	+	7.327031432465619	5.816022027984214	CACAATCAGATTGTT
chr11	10634866	10634867	chr11:10634867:T:C	rs7108708	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr11	10679098	10679099	chr11:10679099:T:C	rs113992088	T	C	t	Sox1_MA0870.1	34	0	-	0	0	.
chr11	10734701	10734702	chr11:10734702:C:A	rs60896113	C	A	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr11	10740876	10740877	chr11:10740877:T:C	rs11604138	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr11	10740911	10740912	chr11:10740912:A:G	rs11603734	A	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	10796304	10796305	chr11:10796305:A:C	rs142260364	A	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	10807558	10807559	chr11:10807559:C:T	rs16908327	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr11	10844479	10844480	chr11:10844480:C:T	rs12418898	C	T	T	Sox1_MA0870.1	4	1	+	5.407779552629835	0.5870142330848629	TACACTAACTTTGTC
chr11	10862111	10862112	chr11:10862112:A:G	rs72858340	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr11	10896731	10896732	chr11:10896732:A:C	rs2896567	A	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	10933770	10933771	chr11:10933771:G:T	rs80006682	G	T	g	Sox1_MA0870.1	26	0	+	0	0	.
chr11	10983399	10983400	chr11:10983400:G:T	rs541088068	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr11	11074193	11074194	chr11:11074194:T:C	rs10840548	T	C	T	Sox1_MA0870.1	9	1	-	4.615152121282648	-2.293602658032572	GCCAATCCCATTGCT
chr11	11116642	11116643	chr11:11116643:G:A	rs11043102	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	11251423	11251424	chr11:11251424:G:A	rs7107507	G	A	g	Sox1_MA0870.1	10	1	+	5.998517443627855	1.4309452880550828	AACAATAGCAGTTCT
chr11	11313799	11313800	chr11:11313800:A:T	rs567272845	A	T	A	Sox1_MA0870.1	21	0	+	0	0	.
chr11	11417128	11417129	chr11:11417129:T:C	rs7948269	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr11	11519533	11519534	chr11:11519534:A:G	rs11601248	A	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr11	11709645	11709646	chr11:11709646:G:A	rs117630104	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr11	11758842	11758843	chr11:11758843:G:C	rs74769387	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	11817153	11817154	chr11:11817154:A:T	rs7117323	A	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	11918284	11918285	chr11:11918285:G:A	rs75403122	G	A	G	Sox1_MA0870.1	12	1	+	8.131561188790942	1.2228064094757216	AAAAATATCAGTGTT
chr11	11935657	11935658	chr11:11935658:G:A	rs79258342	G	A	G	Sox1_MA0870.1	2	1	-	3.3640185558811297	-3.5447362234340902	CACAGTAGGATTGCT
chr11	11987592	11987593	chr11:11987593:T:C	rs977792	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	12077496	12077497	chr11:12077497:C:T	rs148715848	C	T	C	Sox1_MA0870.1	14	1	+	5.6884483279147116	7.199457732396116	TCCAATAGCAGTGCC
chr11	12133535	12133536	chr11:12133536:C:A	rs977244	C	A	A	Sox1_MA0870.1	12	1	-	8.14443636422211	1.2356815849068883	AACAATATTATCGTT
chr11	12154208	12154209	chr11:12154209:C:T	rs73414208	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr11	12193998	12193999	chr11:12193999:T:C	rs4757259	T	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr11	12270460	12270461	chr11:12270461:T:C	rs59709231	T	C	T	Sox1_MA0870.1	9	1	-	4.811497939864834	-2.097256839450386	AACACTGCCACTGCT
chr11	12276420	12276421	chr11:12276421:T:C	rs2896607	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	12293248	12293249	chr11:12293249:C:T	rs138321412	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	12412777	12412778	chr11:12412778:T:C	rs75486022	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr11	12565842	12565843	chr11:12565843:T:C	rs67512993	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	12578296	12578297	chr11:12578297:T:G	rs12271125	T	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	12640628	12640629	chr11:12640629:T:C	rs75645052	T	C	T	Sox1_MA0870.1	4	1	-	4.28837387398895	-2.489204380181238	GCCAATTTCATTCTT
chr11	12820993	12820994	chr11:12820994:C:G	rs16911637	C	G	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	12827637	12827638	chr11:12827638:G:C	rs10765993	G	C	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	12828282	12828283	chr11:12828283:G:A	rs182679763	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr11	12829271	12829272	chr11:12829272:A:G	rs10765994	A	G	a	Sox1_MA0870.1	5	1	-	4.0760191395729315	-2.8271456190748276	AACAATTGCCTTGGG
chr11	13118779	13118780	chr11:13118780:G:C	rs73417474	G	C	G	Sox1_MA0870.1	33	0	+	0	0	.
chr11	13120880	13120881	chr11:13120881:C:T	rs77201953	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr11	13120903	13120904	chr11:13120904:A:T	rs61878005	A	T	A	Sox1_MA0870.1	9	1	+	4.300202926537324	-2.608551852777897	GCTAATTCCATTGTT
chr11	13120927	13120928	chr11:13120928:A:C	rs117780221	A	C	A	Sox1_MA0870.1	33	0	+	0	0	.
chr11	13247808	13247809	chr11:13247809:G:A	rs12417293	G	A	G	Sox1_MA0870.1	10	1	+	8.13589391073216	3.5683217551593858	AACACTCACAGTGTT
chr11	13257894	13257895	chr11:13257895:A:G	rs75606758	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	13291224	13291225	chr11:13291225:C:T	rs7104985	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr11	13562236	13562237	chr11:13562237:G:A	rs10500786	G	A	-	Sox1_MA0870.1	7	1	-	8.416625040794667	8.404795988246294	ATCACTACCATTGGT
chr11	13692299	13692300	chr11:13692300:A:G	rs117739394	A	G	a	Sox1_MA0870.1	5	1	-	4.313872476602027	-2.5892922820457316	AAGCATTTCATTGTT
chr11	13940657	13940658	chr11:13940658:A:T	rs7120608	A	T	T	Sox1_MA0870.1	13	1	-	5.728971431845254	2.383445405256095	AACACTTCCATTCTG
chr11	13940709	13940710	chr11:13940710:G:C	rs149242085	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	14044938	14044939	chr11:14044939:G:A	rs10832169	G	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	14194566	14194567	chr11:14194567:C:G	rs6486180	C	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr11	14337321	14337322	chr11:14337322:C:T	rs118167292	C	T	c	Sox1_MA0870.1	10	1	+	5.907904660370464	12.716601744506798	AACACTGACACTGTC
chr11	14555244	14555245	chr11:14555245:C:T	rs75336838	C	T	C	Sox1_MA0870.1	13	1	+	6.152562579792217	8.330217877243212	AACAATTACATTTCC
chr11	14611943	14611944	chr11:14611944:G:A	rs11023274	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr11	15195727	15195728	chr11:15195728:G:A	rs57506518	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr11	15362183	15362184	chr11:15362184:A:C	rs10832412	A	C	A	Sox1_MA0870.1	15	0	+	0	0	.
chr11	15548499	15548500	chr11:15548500:A:G	rs10766266	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr11	15703321	15703322	chr11:15703322:T:C	rs12365254	T	C	T	Sox1_MA0870.1	9	1	-	4.411618741456557	-2.4971360378586636	CCCAAGTCCATTGTT
chr11	15731055	15731056	chr11:15731056:G:A	rs116262006	G	A	G	Sox1_MA0870.1	9	1	+	9.841227281724617	16.749982061039837	AACAATTACGTTGTT
chr11	15780980	15780981	chr11:15780981:G:A	rs7106868	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	15845328	15845329	chr11:15845329:G:T	rs144454271	G	T	G	Sox1_MA0870.1	7	1	+	7.505574848225647	7.460963295937741	TACAATTGCTTTGTT
chr11	15845353	15845354	chr11:15845354:T:C	rs183094706	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr11	15873631	15873632	chr11:15873632:G:A	rs4756835	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr11	15901881	15901882	chr11:15901882:G:C	rs2582305	G	C	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	17021250	17021251	chr11:17021251:A:T	rs142669360	A	T	A	Sox1_MA0870.1	30	0	-	0	0	.
chr11	17480056	17480057	chr11:17480057:G:A	rs73433183	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr11	17754191	17754192	chr11:17754192:C:A	rs2299637	C	A	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr11	18271337	18271338	chr11:18271338:C:T	rs1533723	C	T	t	Sox1_MA0870.1	10	1	-	6.173900718799019	1.6063285632262456	TGCAATTGCAGTGTA
chr11	18408000	18408001	chr11:18408001:C:G	rs3758683	C	G	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr11	18408443	18408444	chr11:18408444:A:C	rs35292478	A	C	A	Sox1_MA0870.1	32	0	-	0	0	.
chr11	18540643	18540644	chr11:18540644:C:T	rs11024706	C	T	T	Sox1_MA0870.1	10	1	-	5.368486199643616	0.8009140440708437	CATAATGCCAGTGTT
chr11	18580242	18580243	chr11:18580243:C:T	rs61884723	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr11	18761368	18761369	chr11:18761369:G:A	rs1867875	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr11	18803122	18803123	chr11:18803123:C:G	rs4601750	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr11	19025147	19025148	chr11:19025148:G:A	rs986283	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	19399351	19399352	chr11:19399352:C:A	rs77206409	C	A	C	Sox1_MA0870.1	20	0	+	0	0	.
chr11	19466069	19466070	chr11:19466070:G:A	rs1386450	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr11	19500102	19500103	chr11:19500103:A:G	rs150768743	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr11	19719985	19719986	chr11:19719986:G:A	rs1004832110	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr11	19721537	19721538	chr11:19721538:C:T	chr11:19721538:C:T	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr11	19921136	19921137	chr11:19921137:G:T	rs10833194	G	T	G	Sox1_MA0870.1	32	0	-	0	0	.
chr11	19921175	19921176	chr11:19921176:A:C	rs55939373	A	C	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	20027350	20027351	chr11:20027351:G:A	rs557890798	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr11	20116919	20116920	chr11:20116920:C:T	rs2249875	C	T	T	Sox1_MA0870.1	2	1	+	6.582707551172817	-0.3260472281424033	CACACTGGGAGTGTT
chr11	20278530	20278531	chr11:20278531:T:C	rs2403580	T	C	T	Sox1_MA0870.1	9	1	-	8.55787794531585	1.6491231660006298	AACAAAGCCATTGCT
chr11	20355437	20355438	chr11:20355438:C:T	rs2036175	C	T	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	20355446	20355447	chr11:20355447:C:G	rs114501341	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	20355453	20355454	chr11:20355454:A:G	rs1394498923	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr11	20438547	20438548	chr11:20438548:G:A	rs2119994	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr11	20484244	20484245	chr11:20484245:A:T	rs11025581	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr11	21283510	21283511	chr11:21283511:G:A	rs1670653	G	A	A	Sox1_MA0870.1	30	0	-	0	0	.
chr11	21514871	21514872	chr11:21514872:A:G	rs7130553	A	G	A	Sox1_MA0870.1	6	1	-	6.187290996307081	1.7711407091881815	AACAAATACATTGGA
chr11	21807746	21807747	chr11:21807747:G:A	rs7125896	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	21928938	21928939	chr11:21928939:T:C	rs1487814	T	C	T	Sox1_MA0870.1	4	1	-	4.331984917028958	-2.445593337141231	AGCAATTACACTGTC
chr11	22079278	22079279	chr11:22079279:T:C	rs967822066	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	22079289	22079290	chr11:22079290:G:C	rs140124588	G	C	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	22263879	22263880	chr11:22263880:A:G	rs7946977	A	G	G	Sox1_MA0870.1	3	1	+	6.443680057825507	-0.45690960937171965	CACAATTTCATAGTG
chr11	22343197	22343198	chr11:22343198:G:A	rs2246710	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	22392936	22392937	chr11:22392937:T:C	rs2593650	T	C	T	Sox1_MA0870.1	4	1	-	4.292060760485148	-2.48551749368504	GCCAATAACACTGTC
chr11	22625903	22625904	chr11:22625904:C:G	rs142028189	C	G	a	Sox1_MA0870.1	12	1	-	9.478243441876987	2.5694886625617683	ACCAATAGCATTGCA
chr11	23021678	23021679	chr11:23021679:A:G	rs1808511	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr11	23021681	23021682	chr11:23021682:C:G	rs2002608	C	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	23243507	23243508	chr11:23243508:T:C	rs61041833	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr11	23693736	23693737	chr11:23693737:G:A	rs10741991	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	24145523	24145524	chr11:24145524:C:T	rs4526774	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	24234619	24234620	chr11:24234620:C:G	rs2068454	C	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr11	24324387	24324388	chr11:24324388:A:T	rs78908744	A	T	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	24409071	24409072	chr11:24409072:A:C	rs72877634	A	C	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	24549309	24549310	chr11:24549310:C:T	rs2403959	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr11	24626465	24626466	chr11:24626466:T:A	rs4923199	T	A	T	Sox1_MA0870.1	10	1	+	7.093920528688232	0.28522344455189774	CACAATTACATTTTC
chr11	24635118	24635119	chr11:24635119:C:A	rs56108236	C	A	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	24642714	24642715	chr11:24642715:C:T	rs1995841	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	24970262	24970263	chr11:24970263:C:T	rs10742059	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr11	25068718	25068719	chr11:25068719:A:G	rs1374134	A	G	a	Sox1_MA0870.1	10	1	-	14.84896873625469	8.040271652118356	AACAATTACATTGTA
chr11	25122233	25122234	chr11:25122234:T:A	rs1446180	T	A	T	Sox1_MA0870.1	30	0	-	0	0	.
chr11	25163700	25163701	chr11:25163701:G:A	rs10767315	G	A	A	Sox1_MA0870.1	20	0	-	0	0	.
chr11	25523617	25523618	chr11:25523618:A:G	rs1036886	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr11	25768887	25768888	chr11:25768888:A:G	rs180753025	A	G	A	Sox1_MA0870.1	5	1	-	3.5144593234321486	-3.38870543521561	AAAAATTGCAGTGCC
chr11	25775326	25775327	chr11:25775327:C:T	rs4445592	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr11	25798646	25798647	chr11:25798647:G:A	rs149319608	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr11	25843013	25843014	chr11:25843014:G:A	rs10834819	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr11	26014730	26014731	chr11:26014731:G:C	rs76534962	G	C	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr11	26316659	26316660	chr11:26316660:G:A	rs11029515	G	A	A	Sox1_MA0870.1	8	1	-	2.95945229661202	-1.2221572500252624	CACACTTACCTTGCC
chr11	26329183	26329184	chr11:26329184:T:C	rs7121193	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr11	26336223	26336224	chr11:26336224:A:G	rs6484203	A	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr11	26384705	26384706	chr11:26384706:A:G	rs182480027	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr11	26463643	26463644	chr11:26463644:T:A	rs72889128	T	A	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	26550687	26550688	chr11:26550688:T:A	rs449621	T	A	T	Sox1_MA0870.1	11	1	+	5.804922486172803	-1.097810200684029	AACATTTGGATTGTT
chr11	26551327	26551328	chr11:26551328:G:A	rs448525	G	A	A	Sox1_MA0870.1	20	0	+	0	0	.
chr11	26620833	26620834	chr11:26620834:T:C	rs72879841	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr11	26649813	26649814	chr11:26649814:A:T	rs4254034	A	T	T	Sox1_MA0870.1	11	1	-	5.235643278675841	-1.6670894081809906	TACACTTAAATTGTG
chr11	26881515	26881516	chr11:26881516:A:G	rs1375977	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr11	27233751	27233752	chr11:27233752:G:A	rs117375415	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr11	27328842	27328843	chr11:27328843:G:C	rs11029945	G	C	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr11	27498156	27498157	chr11:27498157:T:C	rs140815042	T	C	T	Sox1_MA0870.1	11	1	+	5.264707576094522	0.30931259028418867	AACATTGACAGTGTA
chr11	28108943	28108944	chr11:28108944:G:T	rs112846910	G	T	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr11	29159959	29159960	chr11:29159960:A:G	rs674909	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr11	29162660	29162661	chr11:29162661:T:C	rs79915734	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	29282339	29282340	chr11:29282340:G:T	rs17513662	G	T	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	29502532	29502533	chr11:29502533:C:G	rs2356592	C	G	C	Sox1_MA0870.1	17	0	-	0	0	.
chr11	30547163	30547164	chr11:30547164:A:G	rs12289767	A	G	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	30547184	30547185	chr11:30547185:C:T	rs12276680	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr11	30694138	30694139	chr11:30694139:T:C	rs61886037	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr11	30817356	30817357	chr11:30817357:C:A	rs539352	C	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr11	31815078	31815079	chr11:31815079:C:T	rs1806159	C	T	C	Sox1_MA0870.1	8	1	+	7.364592487255052	3.1829829406177694	TAAAATAACATTGTC
chr11	32069691	32069692	chr11:32069692:T:C	rs224608	T	C	C	Sox1_MA0870.1	13	1	+	7.095401870193363	4.917746572742368	ATAAATATCATTGTT
chr11	32088471	32088472	chr11:32088472:T:C	rs542378633	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr11	32109338	32109339	chr11:32109339:C:T	rs142333054	C	T	C	Sox1_MA0870.1	6	1	-	10.115495395894145	11.654102089034863	TACAATGTCATTGCC
chr11	32352652	32352653	chr11:32352653:T:C	rs4922591	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	32386349	32386350	chr11:32386350:G:T	rs72907602	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	33034089	33034090	chr11:33034090:A:G	rs7113105	A	G	G	Sox1_MA0870.1	5	1	-	4.1815456963328534	-2.7216190623149052	CACACTGACATTTTA
chr11	33169268	33169269	chr11:33169269:T:C	rs11032190	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	33387688	33387689	chr11:33387689:T:C	rs17346987	T	C	T	Sox1_MA0870.1	10	1	+	4.459578084484281	-2.3491189996520516	GAAAATTGCATTGGT
chr11	33530889	33530890	chr11:33530890:T:C	rs1535063	T	C	C	Sox1_MA0870.1	1	1	-	5.353556104043969	1.2552654486508286	AACAAAATCATTTTT
chr11	33692351	33692352	chr11:33692352:A:T	rs79133623	A	T	A	Sox1_MA0870.1	23	0	+	0	0	.
chr11	33724577	33724578	chr11:33724578:A:G	rs560807853	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr11	33725786	33725787	chr11:33725787:C:T	rs861256	C	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr11	33870327	33870328	chr11:33870328:G:A	chr11:33870328:G:A	G	A	g	Sox1_MA0870.1	31	0	-	0	0	.
chr11	33960124	33960125	chr11:33960125:T:C	rs10836134	T	C	C	Sox1_MA0870.1	7	1	+	5.007510557390773	5.019339609939147	CACACCATCATTGCT
chr11	34047286	34047287	chr11:34047287:G:A	rs73486549	G	A	G	Sox1_MA0870.1	2	1	-	3.7722487785535344	-3.1365060007616856	ATCACTAGCAATGTC
chr11	34150833	34150834	chr11:34150834:G:C	rs3763971	G	C	g	Sox1_MA0870.1	22	0	-	0	0	.
chr11	34170053	34170054	chr11:34170054:G:A	rs10836157	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr11	34363918	34363919	chr11:34363919:T:G	rs1460324892	T	G	T	Sox1_MA0870.1	1	1	+	4.913308785332502	4.092302377100499	TTCAAAAGCATTGCT
chr11	34395065	34395066	chr11:34395066:T:C	rs2022322	T	C	C	Sox1_MA0870.1	9	1	-	6.097986855356616	-0.810767923958604	CACAAATCCAGTGTG
chr11	34422403	34422404	chr11:34422404:A:C	rs11032683	A	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	34422404	34422405	chr11:34422405:A:T	rs140132244	A	T	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	34552571	34552572	chr11:34552572:C:T	rs72929323	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr11	34624088	34624089	chr11:34624089:A:G	rs17292176	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	34702181	34702182	chr11:34702182:G:A	rs2084970	G	A	A	Sox1_MA0870.1	16	0	+	0	0	.
chr11	34890741	34890742	chr11:34890742:T:A	rs2915224	T	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	35047047	35047048	chr11:35047048:A:G	rs563528273	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr11	35047058	35047059	chr11:35047059:C:G	rs2785155	C	G	C	Sox1_MA0870.1	18	0	-	0	0	.
chr11	35073776	35073777	chr11:35073777:T:C	rs2553828	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr11	35073800	35073801	chr11:35073801:T:C	rs138040180	T	C	T	Sox1_MA0870.1	1	1	-	7.460963295937741	3.3626726405446	TACAATTTCATTATT
chr11	35088127	35088128	chr11:35088128:G:A	rs1365057	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr11	35146515	35146516	chr11:35146516:G:A	rs114776498	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr11	35190740	35190741	chr11:35190741:A:G	rs7930724	A	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr11	35337962	35337963	chr11:35337963:A:G	rs7927023	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr11	35352303	35352304	chr11:35352304:T:C	rs7127824	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr11	35352326	35352327	chr11:35352327:G:T	rs7111949	G	T	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	35516539	35516540	chr11:35516540:G:C	rs591707	G	C	G	Sox1_MA0870.1	25	0	-	0	0	.
chr11	35530462	35530463	chr11:35530463:A:G	rs598515	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr11	35571942	35571943	chr11:35571943:T:C	rs3980449	T	C	T	Sox1_MA0870.1	1	1	-	4.404666112733256	0.3063754573401162	CAGAATTCGATTGTT
chr11	35582961	35582962	chr11:35582962:C:G	rs12421534	C	G	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr11	35684122	35684123	chr11:35684123:G:A	rs149324489	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	36104107	36104108	chr11:36104108:C:T	rs10836492	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr11	36180129	36180130	chr11:36180130:T:G	rs1997118	T	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr11	36196952	36196953	chr11:36196953:A:T	rs3812770	A	T	T	Sox1_MA0870.1	3	1	+	5.493073166829532	-0.021222139247802363	TTCACTTTCATTGGT
chr11	36212498	36212499	chr11:36212499:C:T	rs3980393	C	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	36296117	36296118	chr11:36296118:G:A	rs4543964	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr11	36388211	36388212	chr11:36388212:G:C	rs7931580	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr11	36452748	36452749	chr11:36452749:C:T	rs7483893	C	T	C	Sox1_MA0870.1	2	1	+	8.435867347395654	1.5271125680804332	AACGCTACCATTGTT
chr11	36724473	36724474	chr11:36724474:C:T	rs11033768	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr11	37108733	37108734	chr11:37108734:T:G	rs4145291	T	G	T	Sox1_MA0870.1	34	0	-	0	0	.
chr11	37278609	37278610	chr11:37278610:G:A	rs78974082	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	37340730	37340731	chr11:37340731:C:T	rs1403264	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr11	37394986	37394987	chr11:37394987:C:T	rs79359778	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr11	37409476	37409477	chr11:37409477:A:G	rs72959365	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	37907604	37907605	chr11:37907605:T:C	rs115659436	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr11	38005892	38005893	chr11:38005893:G:A	rs7108868	G	A	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr11	38819942	38819943	chr11:38819943:T:A	rs10837053	T	A	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	38838471	38838472	chr11:38838472:T:C	rs11034972	T	C	T	Sox1_MA0870.1	9	1	-	3.686177848524828	-3.222576930790393	CCAAATAGCATTGTG
chr11	38937724	38937725	chr11:38937725:A:G	rs6485041	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	39012004	39012005	chr11:39012005:A:G	rs1461630	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr11	39165502	39165503	chr11:39165503:A:G	rs598010	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	39306974	39306975	chr11:39306975:C:T	rs2088544	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	39724977	39724978	chr11:39724978:A:G	rs10837219	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr11	40770938	40770939	chr11:40770939:A:T	rs11036069	A	T	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	40925437	40925438	chr11:40925438:C:A	rs12421406	C	A	C	Sox1_MA0870.1	32	0	-	0	0	.
chr11	40925457	40925458	chr11:40925458:C:A	rs12421408	C	A	C	Sox1_MA0870.1	12	1	-	5.000906187737135	-1.9078485915780843	AACAAGCCCATTGTT
chr11	40952684	40952685	chr11:40952685:C:T	rs11036157	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr11	40987552	40987553	chr11:40987553:C:T	rs34673145	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr11	41307811	41307812	chr11:41307812:C:A	rs10837629	C	A	C	Sox1_MA0870.1	8	1	+	6.262326728300073	0.3691570739818597	CACAATTTCATTTTA
chr11	41497498	41497499	chr11:41497499:A:G	rs11036424	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr11	41996799	41996800	chr11:41996800:C:A	rs138058965	C	A	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr11	41996812	41996813	chr11:41996813:G:A	rs1514816	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr11	42016188	42016189	chr11:42016189:A:C	rs61883367	A	C	A	Sox1_MA0870.1	3	1	+	9.18100032108743	4.095235396049254	CACAATAGCATTTTT
chr11	43032399	43032400	chr11:43032400:C:T	rs1863368	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr11	43706779	43706780	chr11:43706780:T:C	rs11037575	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	43746927	43746928	chr11:43746928:T:G	rs7120264	T	G	T	Sox1_MA0870.1	22	0	+	0	0	.
chr11	43823356	43823357	chr11:43823357:A:G	rs76722737	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr11	43823823	43823824	chr11:43823824:C:T	rs76967008	C	T	C	Sox1_MA0870.1	14	1	-	5.102393583897328	4.927062346830284	CACACAATCAGTGTG
chr11	43908753	43908754	chr11:43908754:C:T	rs11603980	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr11	43923340	43923341	chr11:43923341:A:G	rs576791459	A	G	A	Sox1_MA0870.1	3	1	+	7.97345632341727	1.072866656220044	AACACTTGTAGTGTT
chr11	43999195	43999196	chr11:43999196:C:A	rs72894185	C	A	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr11	44019283	44019284	chr11:44019284:C:A	rs7117014	C	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr11	44036063	44036064	chr11:44036064:C:T	rs10838228	C	T	C	Sox1_MA0870.1	12	1	-	6.945360119333978	0.03660534001875837	ACCACTTACATTGCA
chr11	44084317	44084318	chr11:44084318:A:G	rs2285029	A	G	G	Sox1_MA0870.1	7	1	+	7.495128719814781	7.098150392018274	CACACTGAGATTGTG
chr11	44336665	44336666	chr11:44336666:G:T	rs72893903	G	T	G	Sox1_MA0870.1	33	0	-	0	0	.
chr11	44531173	44531174	chr11:44531174:C:T	rs7108371	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr11	44554712	44554713	chr11:44554713:A:G	rs1991550	A	G	A	Sox1_MA0870.1	10	1	-	3.9603348881475178	-2.8483621959888166	TACCATTGCATTGGG
chr11	44561822	44561823	chr11:44561823:C:T	rs76132864	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr11	44709356	44709357	chr11:44709357:T:A	rs7946015	T	A	T	Sox1_MA0870.1	32	0	-	0	0	.
chr11	44813660	44813661	chr11:44813661:C:T	rs915140976	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr11	44813661	44813662	chr11:44813662:G:A	rs74751251	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr11	44822545	44822546	chr11:44822546:C:T	rs2863121	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	44927686	44927687	chr11:44927687:A:C	rs835989	A	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	44980150	44980151	chr11:44980151:T:C	rs12271690	T	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	44980160	44980161	chr11:44980161:A:G	rs12277907	A	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr11	44992414	44992415	chr11:44992415:T:C	rs4755301	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr11	45189808	45189809	chr11:45189809:T:C	rs3781706	T	C	C	Sox1_MA0870.1	14	1	+	3.814522110251833	2.3035127057704283	GACAGTTGCAGTGCT
chr11	45265240	45265241	chr11:45265241:C:T	rs76073948	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr11	45265299	45265300	chr11:45265300:C:G	rs2902431	C	G	c	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	45284874	45284875	chr11:45284875:C:T	rs74958363	C	T	C	Sox1_MA0870.1	4	1	-	4.550310398372668	11.327888652542857	AACAGTGACATTGAC
chr11	45329554	45329555	chr11:45329555:C:T	rs4755316	C	T	T	Sox1_MA0870.1	34	0	+	0	0	.
chr11	45514780	45514781	chr11:45514781:T:A	rs61880601	T	A	T	Sox1_MA0870.1	33	0	+	0	0	.
chr11	45715976	45715977	chr11:45715977:T:C	rs2955677	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	45804688	45804689	chr11:45804689:T:C	rs73466377	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr11	45948532	45948533	chr11:45948533:T:C	rs2959103	T	C	C	Sox1_MA0870.1	9	1	-	6.0108949641266225	-0.8978598151885991	AGCACTGCCATTGCC
chr11	46310952	46310953	chr11:46310953:T:C	rs2303435	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr11	46489926	46489927	chr11:46489927:A:G	rs141758483	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr11	47246998	47246999	chr11:47246999:T:G	rs7129661	T	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr11	47306019	47306020	chr11:47306020:A:C	rs74757308	A	C	A	Sox1_MA0870.1	33	0	+	0	0	.
chr11	47860577	47860578	chr11:47860578:C:A	rs12366244	C	A	C	Sox1_MA0870.1	12	1	-	5.5599499711525935	-1.3488048081626274	TACAATTTCTTTGTA
chr11	47982371	47982372	chr11:47982372:A:G	rs72899720	A	G	A	Sox1_MA0870.1	10	1	-	10.95199141914862	4.1432943350122855	AACAATTCCATTGGG
chr11	48088240	48088241	chr11:48088241:G:A	rs7479361	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr11	48143294	48143295	chr11:48143295:C:T	rs1566728	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr11	48272484	48272485	chr11:48272485:C:T	rs117274651	C	T	C	Sox1_MA0870.1	12	1	-	3.917607330817736	-2.9911474484974847	AACACTTACTGTGTG
chr11	48461697	48461698	chr11:48461698:C:G	rs1945180	C	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	48707923	48707924	chr11:48707924:G:T	rs7484103	G	T	.	Sox1_MA0870.1	19	0	+	0	0	.
chr11	49327814	49327815	chr11:49327815:G:T	rs2204366	G	T	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	49995686	49995687	chr11:49995687:A:G	rs61893969	A	G	a	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	52826804	52826805	chr11:52826805:A:G	rs1185325161	A	G	.	Sox1_MA0870.1	27	0	-	0	0	.
chr11	54543698	54543699	chr11:54543699:T:A	rs61890652	T	A	.	Sox1_MA0870.1	-5	0	+	0	0	.
chr11	54855288	54855289	chr11:54855289:C:T	rs11600817	C	T	.	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	55870585	55870586	chr11:55870586:C:T	rs7114268	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr11	55870635	55870636	chr11:55870636:G:T	rs10897379	G	T	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	56700310	56700311	chr11:56700311:A:G	rs74218731	A	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	56706287	56706288	chr11:56706288:G:A	rs74184853	G	A	g	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	56706307	56706308	chr11:56706308:A:G	rs75727146	A	G	A	Sox1_MA0870.1	3	1	+	3.688935605774262	-3.211654061422963	GACAAGTGCAGTGCT
chr11	56706328	56706329	chr11:56706329:G:A	rs72919699	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr11	56765055	56765056	chr11:56765056:T:C	rs77869033	T	C	T	Sox1_MA0870.1	10	1	+	5.490959956635338	-1.3177371275009961	CACTATTCCATTGCA
chr11	56802168	56802169	chr11:56802169:C:T	rs4939088	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr11	57155886	57155887	chr11:57155887:G:A	rs11228925	G	A	G	Sox1_MA0870.1	1	1	-	3.1283788445401632	3.6202349822235216	GCCAATAGCCTTGCT
chr11	57199560	57199561	chr11:57199561:G:A	rs140564255	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	57354359	57354360	chr11:57354360:T:C	rs1030330002	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr11	57651114	57651115	chr11:57651115:C:T	rs1647394	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr11	57979929	57979930	chr11:57979930:C:T	rs10792121	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	58112919	58112920	chr11:58112920:C:T	rs1451326	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	58143021	58143022	chr11:58143022:A:G	rs183525692	A	G	a	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	58575747	58575748	chr11:58575748:C:G	rs114681673	C	G	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr11	58636803	58636804	chr11:58636804:C:T	rs948560	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	58641396	58641397	chr11:58641397:A:G	rs11229556	A	G	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	58745982	58745983	chr11:58745983:T:C	rs78018368	T	C	T	Sox1_MA0870.1	1	1	-	7.221982104189208	3.1236914487960665	AACAATTTCATTCCT
chr11	58745988	58745989	chr11:58745989:T:C	rs10896822	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	58905228	58905229	chr11:58905229:C:A	chr11:58905229:C:A	C	A	.	Sox1_MA0870.1	21	0	+	0	0	.
chr11	59025207	59025208	chr11:59025208:T:C	rs10896900	T	C	.	Sox1_MA0870.1	6	1	+	4.54639640882299	0.13024612170409	CACAAATAGATTGCT
chr11	59025604	59025605	chr11:59025605:A:G	rs11229741	A	G	.	Sox1_MA0870.1	-15	0	-	0	0	.
chr11	59192243	59192244	chr11:59192244:G:A	rs151058472	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr11	59192264	59192265	chr11:59192265:A:G	rs112958827	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr11	59335834	59335835	chr11:59335835:G:A	rs61904588	G	A	G	Sox1_MA0870.1	14	1	-	4.80099391194951	6.312003316430914	AACCATATCAGTGGC
chr11	60071147	60071148	chr11:60071148:T:G	rs474951	T	G	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	60156034	60156035	chr11:60156035:A:G	rs983392	A	G	.	Sox1_MA0870.1	15	0	-	0	0	.
chr11	60285825	60285826	chr11:60285826:T:G	rs1025939574	T	G	t	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	60364690	60364691	chr11:60364691:G:A	rs7952244	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr11	60719682	60719683	chr11:60719683:G:A	rs71488491	G	A	G	Sox1_MA0870.1	12	1	+	4.875648319360163	-2.033106459955057	AACACTGCCAGCGTG
chr11	60945885	60945886	chr11:60945886:A:T	rs668338	A	T	A	Sox1_MA0870.1	23	0	-	0	0	.
chr11	61480584	61480585	chr11:61480585:C:G	rs189352081	C	G	C	Sox1_MA0870.1	20	0	+	0	0	.
chr11	61696802	61696803	chr11:61696803:C:G	rs198454	C	G	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr11	61839695	61839696	chr11:61839696:A:G	rs174582	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr11	61953646	61953647	chr11:61953647:T:C	rs195169	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr11	62123528	62123529	chr11:62123529:C:G	rs57611592	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	62126557	62126558	chr11:62126558:A:G	rs12362624	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr11	62126560	62126561	chr11:62126561:T:C	rs7927359	T	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr11	62129931	62129932	chr11:62129932:C:T	rs112218336	C	T	C	Sox1_MA0870.1	3	1	+	3.6094495939577995	3.1809192129186386	TACCATGGCATTGGC
chr11	62165310	62165311	chr11:62165311:A:G	rs7946207	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr11	62203654	62203655	chr11:62203655:G:A	rs72915236	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr11	62432796	62432797	chr11:62432797:A:T	rs17145892	A	T	a	Sox1_MA0870.1	3	1	+	4.4357790514377875	-1.0785162546395468	TGCAATATCAATGTT
chr11	62695073	62695074	chr11:62695074:C:G	rs72929424	C	G	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	62965906	62965907	chr11:62965907:G:T	rs10897309	G	T	T	Sox1_MA0870.1	19	0	+	0	0	.
chr11	63842892	63842893	chr11:63842893:A:G	rs2318126	A	G	G	Sox1_MA0870.1	33	0	-	0	0	.
chr11	63939730	63939731	chr11:63939731:G:A	rs4980499	G	A	G	Sox1_MA0870.1	8	1	-	7.1439586336811045	2.962349087043823	AACCATTTCATTGCA
chr11	63939743	63939744	chr11:63939744:C:A	rs186642834	C	A	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	64135134	64135135	chr11:64135135:T:C	rs772300086	T	C	T	Sox1_MA0870.1	3	1	-	4.577231040191735	-2.3233586270054896	GCCACTGGCAGTGTA
chr11	64483748	64483749	chr11:64483749:C:T	rs634497	C	T	T	Sox1_MA0870.1	7	1	-	2.9391194518687045	3.336097779665213	AACAGTAGCAGTGGG
chr11	64917312	64917313	chr11:64917313:A:G	chr11:64917313:A:G	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr11	65638466	65638467	chr11:65638467:C:T	rs571339919	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr11	65803667	65803668	chr11:65803668:G:T	rs11227304	G	T	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	66033079	66033080	chr11:66033080:C:T	rs72932655	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr11	66138603	66138604	chr11:66138604:T:C	rs965643906	T	C	T	Sox1_MA0870.1	4	1	-	4.723630635243355	-2.053947618926832	CACAATATCAGGGCT
chr11	66226207	66226208	chr11:66226208:A:G	rs4930346	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr11	66349439	66349440	chr11:66349440:A:G	rs4930355	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	66418331	66418332	chr11:66418332:A:G	rs1299363117	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr11	67634683	67634684	chr11:67634684:G:A	rs115175343	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr11	67747569	67747570	chr11:67747570:C:G	rs10791934	C	G	-	Sox1_MA0870.1	2	1	-	4.2510511391481245	11.159805918463347	GAGACTGACATTGTG
chr11	67983759	67983760	chr11:67983760:G:A	rs7931196	G	A	-	Sox1_MA0870.1	26	0	-	0	0	.
chr11	68287721	68287722	chr11:68287722:A:G	rs2175589	A	G	A	Sox1_MA0870.1	3	1	+	3.9055212181236967	-2.995068449073529	AACAATAACTTTTTT
chr11	68343204	68343205	chr11:68343205:C:T	rs75696335	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	68542123	68542124	chr11:68542124:C:T	rs77608548	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr11	68584329	68584330	chr11:68584330:G:A	rs113613587	G	A	G	Sox1_MA0870.1	8	1	-	2.9039518058218516	-1.2776577408154297	GACAATACCAGAGCG
chr11	68659290	68659291	chr11:68659291:G:T	rs7123274	G	T	G	Sox1_MA0870.1	23	0	-	0	0	.
chr11	68659300	68659301	chr11:68659301:A:G	rs77107063	A	G	A	Sox1_MA0870.1	13	1	-	5.81409026201592	3.636434964564926	GACTCTTGCATTGTG
chr11	68659303	68659304	chr11:68659304:A:G	rs373373083	A	G	A	Sox1_MA0870.1	10	1	-	5.81409026201592	-0.9946068221204135	GACTCTTGCATTGTG
chr11	68685516	68685517	chr11:68685517:G:A	rs694066	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr11	68734433	68734434	chr11:68734434:G:A	rs117400627	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr11	69088485	69088486	chr11:69088486:A:G	rs4930265	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr11	69124356	69124357	chr11:69124357:T:C	rs57307280	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	69164434	69164435	chr11:69164435:C:T	rs1453834	C	T	C	Sox1_MA0870.1	14	1	+	4.04758874809831	5.558598152579714	GACCCTGACAGTGTC
chr11	69201347	69201348	chr11:69201348:A:G	rs10792030	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr11	69335355	69335356	chr11:69335356:G:A	rs75100465	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr11	69383218	69383219	chr11:69383219:T:A	rs12146485	T	A	T	Sox1_MA0870.1	29	0	+	0	0	.
chr11	69461614	69461615	chr11:69461615:T:G	rs10796819	T	G	G	Sox1_MA0870.1	7	1	-	5.6938872866337	5.26412645909766	TGCAAATACATTGTT
chr11	69490802	69490803	chr11:69490803:C:T	rs56408035	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr11	69879074	69879075	chr11:69879075:T:C	rs7480774	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr11	69879105	69879106	chr11:69879106:G:T	rs144751625	G	T	G	Sox1_MA0870.1	2	1	-	5.850383818218769	-1.058370961096451	GCCAATATCAGTGCA
chr11	69993210	69993211	chr11:69993211:C:G	rs4980708	C	G	C	Sox1_MA0870.1	4	1	+	5.0821762086885	0.2614108891435284	AACACTACCCTTGAT
chr11	70000733	70000734	chr11:70000734:G:A	rs2015411	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr11	70086343	70086344	chr11:70086344:T:C	rs2515284	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	70493703	70493704	chr11:70493704:A:G	rs78125207	A	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr11	70518403	70518404	chr11:70518404:A:G	rs11236502	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr11	70574442	70574443	chr11:70574443:A:G	rs10899200	A	G	A	Sox1_MA0870.1	6	1	-	3.9203479045036054	-0.4958023826152963	CACAGTTGCAGTGCT
chr11	70650535	70650536	chr11:70650536:A:G	rs500335	A	G	A	Sox1_MA0870.1	10	1	-	4.146941737465735	-2.661755346670598	AGCAAGAGCATTGCT
chr11	70740363	70740364	chr11:70740364:C:A	rs118132458	C	A	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr11	70873791	70873792	chr11:70873792:A:G	rs17346526	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr11	71334793	71334794	chr11:71334794:T:G	rs731054	T	G	T	Sox1_MA0870.1	21	0	+	0	0	.
chr11	71410827	71410828	chr11:71410828:A:C	rs111989006	A	C	A	Sox1_MA0870.1	11	1	-	4.373445848050238	-2.529286838806594	GTCATTATCATTGTC
chr11	71787138	71787139	chr11:71787139:A:T	rs189407419	A	T	a	Sox1_MA0870.1	22	0	+	0	0	.
chr11	71977933	71977934	chr11:71977934:G:A	rs79360732	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr11	71977966	71977967	chr11:71977967:A:G	rs1055956952	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	72000894	72000895	chr11:72000895:T:C	rs1573503	T	C	C	Sox1_MA0870.1	4	1	-	5.007412373685071	-1.7701658804851177	GACAAAGGCAGTGCT
chr11	72041559	72041560	chr11:72041560:C:G	chr11:72041560:C:G	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr11	72083634	72083635	chr11:72083635:C:T	rs577435	C	T	T	Sox1_MA0870.1	8	1	+	6.257979210354302	2.076369663717019	GATAATTACAGTGTT
chr11	72132652	72132653	chr11:72132653:G:A	rs12293195	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr11	72255537	72255538	chr11:72255538:A:C	rs628542	A	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	72617851	72617852	chr11:72617852:C:A	rs117872855	C	A	C	Sox1_MA0870.1	32	0	-	0	0	.
chr11	72753363	72753364	chr11:72753364:T:C	rs898435283	T	C	T	Sox1_MA0870.1	13	1	+	6.555734208500823	4.378078911049829	TACAAAGCCAGTGTT
chr11	72807372	72807373	chr11:72807373:C:T	rs1047495654	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr11	72808710	72808711	chr11:72808711:C:A	rs6592490	C	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	72924832	72924833	chr11:72924833:T:C	rs3207374	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr11	73242297	73242298	chr11:73242298:C:T	rs949140	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	73488017	73488018	chr11:73488018:G:A	rs3103926	G	A	A	Sox1_MA0870.1	28	0	-	0	0	.
chr11	73819012	73819013	chr11:73819013:T:A	rs60487072	T	A	T	Sox1_MA0870.1	1	1	-	5.630486551792827	2.353202304631688	CACATTAACATTGCA
chr11	73967899	73967900	chr11:73967900:T:C	rs4944871	T	C	C	Sox1_MA0870.1	9	1	-	6.739946869050335	-0.16880791026488495	AACACTGACAGTGAA
chr11	74091058	74091059	chr11:74091059:A:T	rs12146632	A	T	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	74138124	74138125	chr11:74138125:T:G	rs778357267	T	G	T	Sox1_MA0870.1	16	0	+	0	0	.
chr11	74325707	74325708	chr11:74325708:C:T	rs634243	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	74565225	74565226	chr11:74565226:C:T	rs7116713	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr11	74611960	74611961	chr11:74611961:G:C	rs6592575	G	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr11	74687622	74687623	chr11:74687623:T:A	rs56154744	T	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr11	74732044	74732045	chr11:74732045:A:G	rs10899042	A	G	A	Sox1_MA0870.1	4	1	+	7.959913783833597	1.1823355296634102	TACAATACCAGTGGC
chr11	74739619	74739620	chr11:74739620:A:G	rs7938764	A	G	A	Sox1_MA0870.1	10	1	-	6.073028009954872	-0.7356690741814613	CCCAATTAGATTGTA
chr11	74821875	74821876	chr11:74821876:G:A	rs11827626	G	A	G	Sox1_MA0870.1	12	1	+	4.8078088254061795	-2.1009459539090414	AACCATTACATCGTA
chr11	75132586	75132587	chr11:75132587:A:G	rs2851095	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr11	75144426	75144427	chr11:75144427:T:C	rs75932564	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr11	75144436	75144437	chr11:75144437:C:T	rs79297525	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr11	75291628	75291629	chr11:75291629:G:C	rs745373	G	C	C	Sox1_MA0870.1	29	0	-	0	0	.
chr11	75325908	75325909	chr11:75325909:C:G	rs534889	C	G	C	Sox1_MA0870.1	28	0	+	0	0	.
chr11	75381766	75381767	chr11:75381767:G:A	rs34113413	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr11	75669975	75669976	chr11:75669976:C:T	chr11:75669976:C:T	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	76151589	76151590	chr11:76151590:A:T	rs594913	A	T	A	Sox1_MA0870.1	6	1	+	7.349492439117551	6.37644372340325	GATAATAGCATTGTG
chr11	76151616	76151617	chr11:76151617:T:C	rs612221	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr11	76300051	76300052	chr11:76300052:G:A	rs7949423	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	76300067	76300068	chr11:76300068:T:C	rs7939513	T	C	T	Sox1_MA0870.1	7	1	+	6.630525526712628	6.642354579261001	CCCACTATCATTGCC
chr11	76459557	76459558	chr11:76459558:A:G	rs185290760	A	G	A	Sox1_MA0870.1	4	1	+	4.783987860149976	-1.993590394020213	ACCCATATCATTGGT
chr11	76564658	76564659	chr11:76564659:T:C	rs12789493	T	C	C	Sox1_MA0870.1	8	1	+	6.684699859201922	10.866309405839203	AACAATTATAGTGGT
chr11	76616152	76616153	chr11:76616153:G:T	rs141627703	G	T	G	Sox1_MA0870.1	12	1	-	7.043773004538579	7.043773004538579	AACAATAAGATTCTT
chr11	76778118	76778119	chr11:76778119:T:C	chr11:76778119:T:C	T	C	T	Sox1_MA0870.1	0	1	-	4.390749517988517	3.0486263751817653	AACAATTGCACTGGC
chr11	76805432	76805433	chr11:76805433:A:G	rs116157282	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr11	76805435	76805436	chr11:76805436:G:A	rs880153	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr11	76863666	76863667	chr11:76863667:A:G	rs7942646	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	76903420	76903421	chr11:76903421:T:C	rs1025815	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	76975630	76975631	chr11:76975631:T:G	rs7121273	T	G	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr11	77140296	77140297	chr11:77140297:G:C	rs78162570	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	77140309	77140310	chr11:77140310:A:G	rs74602628	A	G	A	Sox1_MA0870.1	6	1	+	6.227084584596858	4.688477891456139	GACTCTATCAGTGTT
chr11	77174032	77174033	chr11:77174033:C:G	rs10899355	C	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	77243766	77243767	chr11:77243767:T:C	rs11237145	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	77287812	77287813	chr11:77287813:G:A	rs12361485	G	A	C	Sox1_MA0870.1	12	1	+	4.0869970412857874	-2.8217577380294325	GAAAATACCATCGTT
chr11	77300802	77300803	chr11:77300803:C:T	rs1793470	C	T	T	Sox1_MA0870.1	33	0	-	0	0	.
chr11	77362400	77362401	chr11:77362401:C:T	rs61901809	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	77375000	77375001	chr11:77375001:G:A	rs12287077	G	A	G	Sox1_MA0870.1	10	1	+	5.031430298892446	0.46385814331967357	GACATTACCAGTGTA
chr11	77463582	77463583	chr11:77463583:A:G	rs3015991	A	G	G	Sox1_MA0870.1	14	1	-	6.280515279161968	4.769505874680563	CTCTATTTCATTGTT
chr11	77724785	77724786	chr11:77724786:G:A	rs567814	G	A	G	Sox1_MA0870.1	6	1	+	3.5491595362152437	5.087766229355962	AACACCGCCATTGAT
chr11	77993545	77993546	chr11:77993546:C:T	rs11237348	C	T	T	Sox1_MA0870.1	24	0	-	0	0	.
chr11	77995149	77995150	chr11:77995150:G:C	rs72941381	G	C	G	Sox1_MA0870.1	23	0	-	0	0	.
chr11	78118248	78118249	chr11:78118249:T:C	rs7115416	T	C	C	Sox1_MA0870.1	5	1	+	5.144611028026533	-1.7585537306212244	ATCACTATCATAGTT
chr11	78318999	78319000	chr11:78319000:T:C	rs7116611	T	C	T	Sox1_MA0870.1	4	1	-	3.9622171227254084	-2.8153611314447766	GACCACACCATTGTT
chr11	78769165	78769166	chr11:78769166:G:C	rs10899567	G	C	G	Sox1_MA0870.1	7	1	-	3.418691369741918	3.4514738694814517	CACAATTCCAATGAC
chr11	78797651	78797652	chr11:78797652:C:T	rs7926303	C	T	C	Sox1_MA0870.1	2	1	+	3.7386717382734886	-3.1700830410417287	GACCATCTCATTGTG
chr11	78809428	78809429	chr11:78809429:T:C	rs668121	T	C	C	Sox1_MA0870.1	4	1	-	4.2928276433657135	-2.484750610804473	CACAAGGACAGTGTC
chr11	79089125	79089126	chr11:79089126:T:C	rs10793359	T	C	C	Sox1_MA0870.1	11	1	+	4.47299746736944	-0.48239751844089407	AACAATTACCTTGGG
chr11	79201660	79201661	chr11:79201661:A:G	rs4350384	A	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr11	79222023	79222024	chr11:79222024:A:G	rs567236	A	G	a	Sox1_MA0870.1	11	1	-	3.648411071951532	-1.3069839138588013	AACACTGAGAATGTT
chr11	79261749	79261750	chr11:79261750:A:G	rs11823185	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	79330094	79330095	chr11:79330095:C:T	rs875733	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr11	79391869	79391870	chr11:79391870:T:C	rs551992	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr11	79437968	79437969	chr11:79437969:G:A	rs7116789	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr11	79470558	79470559	chr11:79470559:A:G	rs6592843	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr11	79487888	79487889	chr11:79487889:G:A	rs7944990	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr11	79564572	79564573	chr11:79564573:G:A	rs12364768	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	79982347	79982348	chr11:79982348:T:G	rs493589	T	G	T	Sox1_MA0870.1	3	1	-	4.62317280254603	-0.46259212249214454	ATGAATTCCATTGTC
chr11	80030870	80030871	chr11:80030871:C:T	rs1938874	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr11	80099186	80099187	chr11:80099187:C:A	rs140967147	C	A	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	80594189	80594190	chr11:80594190:C:T	rs542732084	C	T	C	Sox1_MA0870.1	13	1	+	7.225668990685405	9.4033242881364	AACAATAACAATGCC
chr11	80673655	80673656	chr11:80673656:A:G	rs4122080	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr11	80684462	80684463	chr11:80684463:G:A	rs10792505	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr11	80884369	80884370	chr11:80884370:G:A	rs76553025	G	A	A	Sox1_MA0870.1	32	0	+	0	0	.
chr11	81017609	81017610	chr11:81017610:C:T	rs1498326	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr11	81233157	81233158	chr11:81233158:A:G	rs12574178	A	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr11	81247120	81247121	chr11:81247121:C:A	rs4551792	C	A	C	Sox1_MA0870.1	8	1	+	6.02122571378456	0.1280560594663459	TTCAATTTCATTGAG
chr11	81412193	81412194	chr11:81412194:T:C	rs17142194	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	81886491	81886492	chr11:81886492:G:A	rs1540199	G	A	A	Sox1_MA0870.1	10	1	+	7.815182296703416	3.2476101411306426	ACCACTACCAGTGTC
chr11	82073539	82073540	chr11:82073540:A:T	rs7102900	A	T	A	Sox1_MA0870.1	1	1	+	4.109792206780167	0.8325079596190251	CACAATAGCATTTAG
chr11	82191941	82191942	chr11:82191942:T:C	rs11233035	T	C	T	Sox1_MA0870.1	6	1	+	6.201112486336208	1.784962199217306	GACAATTGCCTTGTA
chr11	82202273	82202274	chr11:82202274:G:C	rs12787306	G	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	82811042	82811043	chr11:82811043:A:C	rs2510282	A	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr11	82930321	82930322	chr11:82930322:G:C	rs10431162	G	C	G	Sox1_MA0870.1	12	1	+	7.641629654548459	0.732874875233239	AACATTTCCATTGTA
chr11	83349800	83349801	chr11:83349801:A:T	chr11:83349801:A:T	A	T	A	Sox1_MA0870.1	25	0	-	0	0	.
chr11	83614070	83614071	chr11:83614071:G:C	rs1228632	G	C	G	Sox1_MA0870.1	31	0	-	0	0	.
chr11	83679355	83679356	chr11:83679356:C:A	rs7927393	C	A	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	83796385	83796386	chr11:83796386:C:T	rs3862777	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	83999391	83999392	chr11:83999392:G:A	rs115884430	G	A	G	Sox1_MA0870.1	14	1	-	6.738401584370758	8.249410988852162	TACACTGGCATTGGC
chr11	83999444	83999445	chr11:83999445:C:T	rs1601091	C	T	C	Sox1_MA0870.1	4	1	+	9.009556669809617	4.188791350264646	ATCACTGCCATTGTC
chr11	84155478	84155479	chr11:84155479:A:G	rs1620817	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr11	84195223	84195224	chr11:84195224:T:C	rs12802109	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr11	84798981	84798982	chr11:84798982:C:T	rs188071279	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	85281824	85281825	chr11:85281825:G:A	rs580188	G	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr11	85296092	85296093	chr11:85296093:T:C	rs186525400	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	85755667	85755668	chr11:85755668:A:G	rs666176	A	G	A	Sox1_MA0870.1	14	1	-	5.313229273781145	3.80221986929974	GGCACTTGCATTGGT
chr11	85783742	85783743	chr11:85783743:C:T	rs667080	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr11	85809536	85809537	chr11:85809537:G:A	rs79753303	G	A	G	Sox1_MA0870.1	10	1	+	5.786858468399196	1.2192863128264237	CACAAAGACAGTGTA
chr11	85945858	85945859	chr11:85945859:T:C	rs34874199	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr11	86089164	86089165	chr11:86089165:A:C	rs4943937	A	C	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	86093389	86093390	chr11:86093390:G:A	rs12284629	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr11	86194672	86194673	chr11:86194673:G:A	rs10792837	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	86197703	86197704	chr11:86197704:T:C	chr11:86197704:T:C	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	86371278	86371279	chr11:86371279:A:C	chr11:86371279:A:C	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr11	86371278	86371279	chr11:86371279:A:G	rs11604281	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr11	86371279	86371280	chr11:86371280:T:C	rs292100	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr11	86487292	86487293	chr11:86487293:C:T	rs669325	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr11	86519361	86519362	chr11:86519362:T:A	rs3889658	T	A	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	86641849	86641850	chr11:86641850:T:A	rs1938922	T	A	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr11	86940345	86940346	chr11:86940346:A:T	rs11234889	A	T	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr11	86997247	86997248	chr11:86997248:C:A	rs4944652	C	A	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	86997585	86997586	chr11:86997586:T:C	rs12800615	T	C	C	Sox1_MA0870.1	22	0	+	0	0	.
chr11	87148084	87148085	chr11:87148085:A:G	rs144715854	A	G	A	Sox1_MA0870.1	14	1	+	9.264280745517738	9.439611982584783	AACAAAGACATTGTA
chr11	87148099	87148100	chr11:87148100:T:C	rs533056	T	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr11	87173782	87173783	chr11:87173783:C:G	rs604035	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr11	87173811	87173812	chr11:87173812:C:T	rs149160412	C	T	C	Sox1_MA0870.1	0	1	-	3.6254148675155586	4.967538010322312	GCCAATAACACTGCT
chr11	87188042	87188043	chr11:87188043:C:T	rs471753	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	87327026	87327027	chr11:87327027:A:G	rs12284055	A	G	A	Sox1_MA0870.1	14	1	-	8.137151209458404	6.626141804976999	AACAACATCAGTGTT
chr11	87361055	87361056	chr11:87361056:G:C	rs2226629	G	C	G	Sox1_MA0870.1	17	0	-	0	0	.
chr11	87456702	87456703	chr11:87456703:A:C	rs12281894	A	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	87778645	87778646	chr11:87778646:G:A	rs76921037	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	87967639	87967640	chr11:87967640:A:C	rs4517540	A	C	A	Sox1_MA0870.1	9	1	+	6.414468879768059	-0.4942858995471614	TCCACTTCCAGTGTT
chr11	88086393	88086394	chr11:88086394:C:T	rs10831489	C	T	C	Sox1_MA0870.1	12	1	-	5.5962215182603305	-1.3125332610548899	ATCAATACCCTTGTC
chr11	88363966	88363967	chr11:88363967:G:C	rs766569466	G	C	G	Sox1_MA0870.1	1	1	-	3.201422139052403	2.8722718685037614	CCCAATACCCTTGCT
chr11	88523522	88523523	chr11:88523523:A:G	rs73536292	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr11	88523635	88523636	chr11:88523636:C:A	rs1045484863	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	88683247	88683248	chr11:88683248:A:G	rs7950074	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	88751657	88751658	chr11:88751658:G:C	rs12276517	G	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr11	88759637	88759638	chr11:88759638:G:A	rs6483442	G	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr11	90204989	90204990	chr11:90204990:A:G	chr11:90204990:A:G	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr11	90205008	90205009	chr11:90205009:A:C	rs377583702	A	C	A	Sox1_MA0870.1	17	0	+	0	0	.
chr11	90205019	90205020	chr11:90205020:C:T	rs150523040	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr11	90282752	90282753	chr11:90282753:C:T	rs528306897	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr11	90455187	90455188	chr11:90455188:T:C	rs76870789	T	C	t	Sox1_MA0870.1	31	0	+	0	0	.
chr11	90510872	90510873	chr11:90510873:A:C	rs7934474	A	C	A	Sox1_MA0870.1	6	1	-	5.410253769025914	4.844695791599497	AACACATGCAGTGTG
chr11	90804930	90804931	chr11:90804931:A:G	rs10741376	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr11	91218368	91218369	chr11:91218369:A:G	rs16915820	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr11	91514222	91514223	chr11:91514223:A:G	rs7935947	A	G	G	Sox1_MA0870.1	3	1	+	6.122353154479061	-0.7782365127181633	ATCAATTTCTTTGTT
chr11	91658466	91658467	chr11:91658467:T:C	rs77378275	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr11	91686483	91686484	chr11:91686484:A:G	rs7118704	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr11	91947303	91947304	chr11:91947304:T:G	rs374687695	T	G	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	92302775	92302776	chr11:92302776:T:C	rs529059804	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr11	92410523	92410524	chr11:92410524:G:A	rs35228080	G	A	G	Sox1_MA0870.1	2	1	-	9.654284665821482	2.7455298865062607	AACAAAGACATTGTC
chr11	92713389	92713390	chr11:92713390:C:T	rs2676171	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	92738975	92738976	chr11:92738976:C:T	rs78102219	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr11	93234896	93234897	chr11:93234897:C:T	rs151051150	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	93239436	93239437	chr11:93239437:G:A	rs12803876	G	A	G	Sox1_MA0870.1	10	1	+	4.79911300065727	0.23154084508449646	ATCACTTGCAGTGCA
chr11	93370663	93370664	chr11:93370664:T:C	rs3020073	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr11	93372798	93372799	chr11:93372799:T:C	rs3020071	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr11	93497592	93497593	chr11:93497593:G:A	rs11606253	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr11	93497635	93497636	chr11:93497636:G:T	rs11606261	G	T	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	93517660	93517661	chr11:93517661:T:C	rs2658768	T	C	C	Sox1_MA0870.1	22	0	+	0	0	.
chr11	93560327	93560328	chr11:93560328:A:G	rs2399684	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr11	93728014	93728015	chr11:93728015:T:A	rs138515169	T	A	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	93821266	93821267	chr11:93821267:C:T	rs114437106	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	93936246	93936247	chr11:93936247:C:A	rs10501811	C	A	C	Sox1_MA0870.1	13	1	-	3.612912629158607	7.25546035579568	GACTATTGCAGTGGT
chr11	93986907	93986908	chr11:93986908:T:G	rs1441331489	T	G	T	Sox1_MA0870.1	11	1	+	5.006812630562527	-1.8959200562943064	CACAATTTTAGTGGT
chr11	94398251	94398252	chr11:94398252:T:C	rs10831222	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	94478881	94478882	chr11:94478882:C:T	rs535801	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr11	94623504	94623505	chr11:94623505:T:C	chr11:94623505:T:C	T	C	.	Sox1_MA0870.1	-14	0	+	0	0	.
chr11	94663137	94663138	chr11:94663138:C:G	rs7115977	C	G	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr11	94814581	94814582	chr11:94814582:C:A	rs10501816	C	A	C	Sox1_MA0870.1	33	0	-	0	0	.
chr11	94889568	94889569	chr11:94889569:G:A	rs566217	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	95254234	95254235	chr11:95254235:A:G	rs901326354	A	G	A	Sox1_MA0870.1	4	1	+	4.0274431899689525	-2.7501350642012365	CACAATAGCATTTGC
chr11	95254249	95254250	chr11:95254250:T:C	rs1328134682	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr11	95318884	95318885	chr11:95318885:C:T	rs547765557	C	T	C	Sox1_MA0870.1	13	1	+	6.864736729645128	9.042392027096122	GACAATACCCTTGCT
chr11	95600122	95600123	chr11:95600123:C:G	rs7109623	C	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr11	95600130	95600131	chr11:95600131:A:G	rs79249315	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr11	95661245	95661246	chr11:95661246:G:A	rs7946533	G	A	A	Sox1_MA0870.1	12	1	+	9.028113499166892	2.119358719851672	TACAATAGTATTGCT
chr11	95836018	95836019	chr11:95836019:G:A	rs499637	G	A	A	Sox1_MA0870.1	8	1	+	6.069797544537963	3.947130883120087	TACTATACGATTGTT
chr11	95922691	95922692	chr11:95922692:A:C	rs16922701	A	C	A	Sox1_MA0870.1	13	1	-	8.195160959171313	4.552613232534239	CACACTATAATTGTT
chr11	95937715	95937716	chr11:95937716:T:A	rs6483462	T	A	T	Sox1_MA0870.1	11	1	+	4.194859867951633	-2.7078728189051984	CACTTTAACATTGTT
chr11	96000181	96000182	chr11:96000182:T:C	rs725271	T	C	T	Sox1_MA0870.1	10	1	+	4.869960877107944	-1.9387362070283878	AACAAAACAATTGTC
chr11	96038045	96038046	chr11:96038046:T:C	rs532151	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr11	96066319	96066320	chr11:96066320:C:T	rs746039058	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr11	96102664	96102665	chr11:96102665:A:G	rs80213565	A	G	A	Sox1_MA0870.1	4	1	+	8.471672792569354	1.6940945383991663	AACAATATCATTCTA
chr11	96168912	96168913	chr11:96168913:C:T	rs188915014	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr11	96192870	96192871	chr11:96192871:G:A	rs6483488	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr11	96200258	96200259	chr11:96200259:G:A	rs144560564	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	96388690	96388691	chr11:96388691:C:T	rs11021568	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr11	96608059	96608060	chr11:96608060:G:A	rs3018648	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr11	96622224	96622225	chr11:96622225:T:G	rs3018664	T	G	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr11	96799391	96799392	chr11:96799392:G:A	rs72980859	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr11	97568080	97568081	chr11:97568081:G:A	rs12288740	G	A	g	Sox1_MA0870.1	27	0	+	0	0	.
chr11	97752968	97752969	chr11:97752969:C:T	rs11212573	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	98070742	98070743	chr11:98070743:A:G	rs35632231	A	G	A	Sox1_MA0870.1	10	1	-	8.358679012950967	1.5499819288146335	ATCACTATCATTGCC
chr11	98184269	98184270	chr11:98184270:C:T	rs11214249	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr11	98546230	98546231	chr11:98546231:A:G	rs72990050	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr11	98793490	98793491	chr11:98793491:C:T	rs146613707	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	99383875	99383876	chr11:99383876:G:T	rs74341429	G	T	G	Sox1_MA0870.1	19	0	-	0	0	.
chr11	99640817	99640818	chr11:99640818:C:G	rs688000	C	G	C	Sox1_MA0870.1	30	0	+	0	0	.
chr11	100368082	100368083	chr11:100368083:T:G	rs2508275	T	G	c	Sox1_MA0870.1	19	0	+	0	0	.
chr11	100550599	100550600	chr11:100550600:C:T	rs1939309	C	T	T	Sox1_MA0870.1	8	1	+	4.589691919726828	0.4080823730895453	GACACTTTCATTCTC
chr11	100670196	100670197	chr11:100670197:C:G	rs3958711	C	G	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	101511209	101511210	chr11:101511210:T:G	rs7116629	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	101511293	101511294	chr11:101511294:G:A	rs7127243	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr11	101674661	101674662	chr11:101674662:C:A	rs4754788	C	A	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	102204149	102204150	chr11:102204150:G:A	rs7931576	G	A	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	102317837	102317838	chr11:102317838:T:C	rs17887192	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	102318831	102318832	chr11:102318832:A:G	rs17883897	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr11	102456555	102456556	chr11:102456556:A:T	rs78664789	A	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	102530901	102530902	chr11:102530902:G:A	rs11568819	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr11	102530929	102530930	chr11:102530930:T:C	rs11568818	T	C	T	Sox1_MA0870.1	3	1	-	8.663046817204446	1.7624571500072204	GACAAATACATTGTG
chr11	102553813	102553814	chr11:102553814:G:A	rs2186763	G	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr11	102593217	102593218	chr11:102593218:C:T	rs750263592	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr11	102593218	102593219	chr11:102593219:A:G	rs1784441	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr11	102771451	102771452	chr11:102771452:C:T	rs17359230	C	T	.	Sox1_MA0870.1	33	0	+	0	0	.
chr11	103429541	103429542	chr11:103429542:T:C	rs519773	T	C	t	Sox1_MA0870.1	-16	0	-	0	0	.
chr11	103474876	103474877	chr11:103474877:A:C	rs11225823	A	C	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr11	103632192	103632193	chr11:103632193:C:T	rs2122781	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr11	103682743	103682744	chr11:103682744:A:G	rs77825452	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr11	103792872	103792873	chr11:103792873:A:G	rs73599615	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	103843409	103843410	chr11:103843410:T:C	rs78818179	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr11	103899221	103899222	chr11:103899222:G:A	rs77932704	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr11	104111104	104111105	chr11:104111105:A:G	rs168636	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr11	104125935	104125936	chr11:104125936:T:C	rs361292	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr11	104418617	104418618	chr11:104418618:C:T	rs10791702	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr11	104488707	104488708	chr11:104488708:G:A	rs78526685	G	A	G	Sox1_MA0870.1	13	1	-	3.693278276735762	5.870933574186756	CTAAATACCATTGCT
chr11	104514266	104514267	chr11:104514267:C:T	rs4755044	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr11	104526581	104526582	chr11:104526582:G:C	rs1487687	G	C	G	Sox1_MA0870.1	29	0	+	0	0	.
chr11	104707352	104707353	chr11:104707353:C:T	rs549766074	C	T	C	Sox1_MA0870.1	11	1	+	4.999156057257654	9.954551043067987	AACCATATCAGCGTT
chr11	104730293	104730294	chr11:104730294:C:T	rs118159495	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr11	105056900	105056901	chr11:105056901:G:A	rs521869	G	A	.	Sox1_MA0870.1	4	1	-	5.608593244898094	0.7878279253531212	ATCACTTATATTGTG
chr11	105227379	105227380	chr11:105227380:C:T	rs1449045	C	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr11	105556889	105556890	chr11:105556890:A:T	rs1942973	A	T	T	Sox1_MA0870.1	13	1	-	13.486365018470021	10.140838991880862	TACAATAGCATTGTA
chr11	105726047	105726048	chr11:105726048:G:A	rs1954762	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr11	106078373	106078374	chr11:106078374:C:A	chr11:106078374:C:A	C	A	c	Sox1_MA0870.1	29	0	-	0	0	.
chr11	106420544	106420545	chr11:106420545:A:C	rs2513602	A	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	106695668	106695669	chr11:106695669:A:G	rs17105958	A	G	A	Sox1_MA0870.1	5	1	-	3.9990819279113863	-2.904082830736373	AACAGTTCCATTGGA
chr11	106733072	106733073	chr11:106733073:C:T	rs1565161	C	T	c	Sox1_MA0870.1	-8	0	-	0	0	.
chr11	106805538	106805539	chr11:106805539:C:G	rs114642868	C	G	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	106854235	106854236	chr11:106854236:A:G	rs11524439	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr11	107439982	107439983	chr11:107439983:A:T	rs185669113	A	T	A	Sox1_MA0870.1	30	0	-	0	0	.
chr11	107439983	107439984	chr11:107439984:T:A	rs602625	T	A	T	Sox1_MA0870.1	29	0	-	0	0	.
chr11	107529987	107529988	chr11:107529988:T:C	rs61908181	T	C	T	Sox1_MA0870.1	6	1	-	3.841077345049299	2.3024706519085814	GTCACTAGCATTCTT
chr11	107705459	107705460	chr11:107705460:T:G	rs12294839	T	G	G	Sox1_MA0870.1	12	1	-	5.025468727913553	5.025468727913553	AACAATTGCAGTACT
chr11	107856173	107856174	chr11:107856174:T:C	rs948223953	T	C	t	Sox1_MA0870.1	33	0	+	0	0	.
chr11	108093423	108093424	chr11:108093424:C:A	chr11:108093424:C:A	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	108125175	108125176	chr11:108125176:A:G	rs7123836	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	108204573	108204574	chr11:108204574:A:C	chr11:108204574:A:C	A	C	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	108486980	108486981	chr11:108486981:A:G	rs560820014	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr11	108561881	108561882	chr11:108561882:C:T	rs4437999	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr11	108561907	108561908	chr11:108561908:A:G	rs2256362	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr11	108664865	108664866	chr11:108664866:T:G	rs186637062	T	G	T	Sox1_MA0870.1	21	0	+	0	0	.
chr11	109020045	109020046	chr11:109020046:A:G	rs11212860	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr11	109033823	109033824	chr11:109033824:G:A	rs1018227	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr11	109130209	109130210	chr11:109130210:G:C	rs17633668	G	C	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	109184558	109184559	chr11:109184559:T:C	rs993882125	T	C	T	Sox1_MA0870.1	11	1	+	9.563285594687661	4.607890608877327	ATCACTTTCATTGTC
chr11	109389482	109389483	chr11:109389483:T:C	rs902226277	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	109427176	109427177	chr11:109427177:C:T	rs117650464	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr11	109669713	109669714	chr11:109669714:A:G	rs1352305	A	G	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	109891059	109891060	chr11:109891060:C:T	rs561781	C	T	C	Sox1_MA0870.1	12	1	-	4.1631117425740065	-2.7456430367412135	TTCACTGCCAGTGCT
chr11	109915464	109915465	chr11:109915465:T:G	rs6589095	T	G	G	Sox1_MA0870.1	10	1	+	11.01788227228942	8.776757343725858	AACACTTCCATTGAT
chr11	109961016	109961017	chr11:109961017:T:C	rs17110551	T	C	T	Sox1_MA0870.1	7	1	-	6.91304000887804	6.516061681081533	GACAATCACATTGCA
chr11	110087099	110087100	chr11:110087100:G:A	rs10891052	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr11	110132659	110132660	chr11:110132660:T:C	rs610984	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr11	110397816	110397817	chr11:110397817:C:G	rs2585794	C	G	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	111045166	111045167	chr11:111045167:C:T	rs553383624	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr11	111045184	111045185	chr11:111045185:C:T	rs527727775	C	T	C	Sox1_MA0870.1	0	1	-	3.9714387969772464	5.313561939784	GGCACTGGCAGTGCT
chr11	111459521	111459522	chr11:111459522:C:G	rs58342953	C	G	C	Sox1_MA0870.1	25	0	+	0	0	.
chr11	111635155	111635156	chr11:111635156:T:C	rs12791699	T	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	111646055	111646056	chr11:111646056:A:G	rs111888836	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr11	112200570	112200571	chr11:112200571:G:A	rs12420140	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr11	112249351	112249352	chr11:112249352:G:C	rs2564875	G	C	G	Sox1_MA0870.1	20	0	-	0	0	.
chr11	112564124	112564125	chr11:112564125:T:C	rs11214245	T	C	T	Sox1_MA0870.1	1	1	-	3.98828909283155	-0.11000156256158977	AACCCTGACATTGGC
chr11	112649806	112649807	chr11:112649807:G:A	rs2513314	G	A	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	112722154	112722155	chr11:112722155:T:C	rs73564913	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr11	112749300	112749301	chr11:112749301:T:C	rs111577874	T	C	T	Sox1_MA0870.1	7	1	+	5.30147800304724	5.313307055595615	AACAATATCATTTAG
chr11	112778980	112778981	chr11:112778981:T:C	rs17114357	T	C	t	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	112908225	112908226	chr11:112908226:C:T	rs1447482	C	T	T	Sox1_MA0870.1	22	0	-	0	0	.
chr11	112978059	112978060	chr11:112978060:C:T	rs12280512	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	113511149	113511150	chr11:113511150:C:G	rs35511553	C	G	C	Sox1_MA0870.1	19	0	+	0	0	.
chr11	113553971	113553972	chr11:113553972:A:G	rs141528070	A	G	A	Sox1_MA0870.1	10	1	-	5.130479487921412	-1.678217596214921	AACACTCACATTGAA
chr11	113772555	113772556	chr11:113772556:A:G	rs74610167	A	G	A	Sox1_MA0870.1	12	1	+	4.0528925665547995	10.96164734587002	AACAATATCAGTACA
chr11	113778349	113778350	chr11:113778350:T:A	rs528171991	T	A	T	Sox1_MA0870.1	21	0	-	0	0	.
chr11	113933385	113933386	chr11:113933386:T:C	rs1176743	T	C	C	Sox1_MA0870.1	6	1	+	4.922434910826315	0.506284623707414	CACACTTACATTATG
chr11	114027548	114027549	chr11:114027549:A:G	rs12282065	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr11	114115735	114115736	chr11:114115736:A:G	rs1003390913	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr11	114148217	114148218	chr11:114148218:A:G	rs11214878	A	G	A	Sox1_MA0870.1	10	1	-	3.8479031317625396	-2.960793952373794	GACAATGGCATTCCC
chr11	114154809	114154810	chr11:114154810:A:C	rs188314578	A	C	A	Sox1_MA0870.1	14	1	-	7.820250178204816	6.094568090486712	CTCAATCACATTGTT
chr11	114348327	114348328	chr11:114348328:G:C	rs2847491	G	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr11	114348342	114348343	chr11:114348343:G:T	rs183950011	G	T	G	Sox1_MA0870.1	15	0	-	0	0	.
chr11	114369405	114369406	chr11:114369406:G:A	rs76168945	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr11	114399881	114399882	chr11:114399882:C:A	rs3741302	C	A	A	Sox1_MA0870.1	7	1	+	4.441946900219006	4.871707727755047	AACAACACGATTGCT
chr11	114819728	114819729	chr11:114819729:G:T	rs4938141	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr11	115082928	115082929	chr11:115082929:C:T	rs2513682	C	T	C	Sox1_MA0870.1	2	1	+	5.8338084034857225	-1.0749463758294984	GACAAGTCCAGTGTT
chr11	115167687	115167688	chr11:115167688:C:T	rs11215392	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr11	115201636	115201637	chr11:115201637:A:G	rs77707760	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr11	115378193	115378194	chr11:115378194:T:C	rs528072517	T	C	T	Sox1_MA0870.1	4	1	-	6.671185429055834	-0.10639282511435622	AACAATAGCAGAGTC
chr11	115451044	115451045	chr11:115451045:T:C	rs314475	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr11	115533433	115533434	chr11:115533434:T:C	rs1460913	T	C	C	Sox1_MA0870.1	0	1	+	9.283953150214787	9.986329907362267	TACCATTTCATTGTT
chr11	115582145	115582146	chr11:115582146:G:A	rs11215605	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	115622851	115622852	chr11:115622852:A:G	rs146936541	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	115805482	115805483	chr11:115805483:G:A	rs12789920	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr11	115984361	115984362	chr11:115984362:G:T	rs1262514	G	T	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr11	116210479	116210480	chr11:116210480:C:T	rs10891927	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr11	116427649	116427650	chr11:116427650:A:C	rs490592	A	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr11	116427658	116427659	chr11:116427659:T:C	rs59287151	T	C	T	Sox1_MA0870.1	5	1	+	4.723772113518718	-2.1793926451290404	TACAATGTCATAGCT
chr11	116431530	116431531	chr11:116431531:A:G	rs11601357	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr11	116592070	116592071	chr11:116592071:G:A	rs12420596	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr11	116614865	116614866	chr11:116614866:T:A	rs477047	T	A	T	Sox1_MA0870.1	18	0	+	0	0	.
chr11	116614881	116614882	chr11:116614882:G:A	rs476362	G	A	A	Sox1_MA0870.1	34	0	+	0	0	.
chr11	116830957	116830958	chr11:116830958:T:A	rs2070666	T	A	T	Sox1_MA0870.1	31	0	-	0	0	.
chr11	116940058	116940059	chr11:116940059:T:C	rs79394589	T	C	T	Sox1_MA0870.1	13	1	+	6.977677651716543	4.80002235426555	AAGAATGGCATTGTA
chr11	117023073	117023074	chr11:117023074:G:A	rs74691084	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	117083848	117083849	chr11:117083849:C:T	rs10892071	C	T	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	117102263	117102264	chr11:117102264:A:G	rs12281115	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr11	117161408	117161409	chr11:117161409:G:T	rs3736120	G	T	G	Sox1_MA0870.1	12	1	+	3.35748804933082	-3.5512667299844	GATACTGTCATTGCT
chr11	117231483	117231484	chr11:117231484:G:A	rs61906491	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr11	117418630	117418631	chr11:117418631:G:A	rs10790181	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	117426875	117426876	chr11:117426876:T:A	chr11:117426876:T:A	T	A	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr11	117470749	117470750	chr11:117470750:T:C	rs12362636	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr11	117625759	117625760	chr11:117625760:T:C	rs10790196	T	C	C	Sox1_MA0870.1	5	1	-	3.8060650744816824	1.922030329144457	CCCACAGGCATTGTT
chr11	117729900	117729901	chr11:117729901:C:T	rs11600991	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	118053439	118053440	chr11:118053440:G:A	rs79944284	G	A	G	Sox1_MA0870.1	7	1	-	5.536248262338441	5.524419209790068	CACTCTGCCATTGTC
chr11	118241616	118241617	chr11:118241617:C:A	rs12419365	C	A	C	Sox1_MA0870.1	21	0	-	0	0	.
chr11	118594099	118594100	chr11:118594100:G:C	rs11216921	G	C	G	Sox1_MA0870.1	18	0	-	0	0	.
chr11	118792639	118792640	chr11:118792640:A:C	rs1039709447	A	C	A	Sox1_MA0870.1	11	1	-	3.8402513213224925	-3.0624813655343397	AACACAGACATTGGG
chr11	118834944	118834945	chr11:118834945:A:G	rs649338	A	G	G	Sox1_MA0870.1	11	1	-	5.667794341243497	0.7123993554331638	AACAATAACAATGAA
chr11	119203416	119203417	chr11:119203417:C:T	rs11824391	C	T	t	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	119446130	119446131	chr11:119446131:C:T	rs368883465	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr11	119516300	119516301	chr11:119516301:C:T	rs670315	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr11	119516308	119516309	chr11:119516309:G:A	rs80106590	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr11	119903087	119903088	chr11:119903088:T:C	rs117913812	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr11	119924884	119924885	chr11:119924885:C:A	rs551163	C	A	C	Sox1_MA0870.1	2	1	+	4.119487612314298	-2.789267167000922	ACCAATTTCCTTGTC
chr11	119924901	119924902	chr11:119924902:G:T	rs479455	G	T	G	Sox1_MA0870.1	19	0	+	0	0	.
chr11	119937342	119937343	chr11:119937343:G:A	rs1955021	G	A	A	Sox1_MA0870.1	8	1	-	5.762558659488475	1.5809491128511914	AACAATTACATTACA
chr11	119948079	119948080	chr11:119948080:A:T	rs895653	A	T	A	Sox1_MA0870.1	19	0	-	0	0	.
chr11	119971998	119971999	chr11:119971999:A:G	rs17123506	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr11	120065025	120065026	chr11:120065026:C:A	rs11217667	C	A	C	Sox1_MA0870.1	2	1	+	3.6599487186445163	-3.2488060606707028	CACACCAACAGTGTG
chr11	120086842	120086843	chr11:120086843:T:C	rs185776522	T	C	T	Sox1_MA0870.1	9	1	-	9.581424423610418	2.6726696442951967	TTCAATTTCATTGTC
chr11	120328760	120328761	chr11:120328761:A:T	rs73578293	A	T	-	Sox1_MA0870.1	5	1	-	5.465943471078072	0.44681345776753834	CACAATATGACTGTT
chr11	120328778	120328779	chr11:120328779:C:T	rs11217819	C	T	-	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	120735867	120735868	chr11:120735868:G:C	rs2155264	G	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr11	120912607	120912608	chr11:120912608:G:A	rs143524866	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	120932731	120932732	chr11:120932732:A:G	chr11:120932732:A:G	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr11	120991257	120991258	chr11:120991258:T:C	rs582800	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr11	121459669	121459670	chr11:121459670:A:G	rs11218296	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	121665301	121665302	chr11:121665302:G:C	rs568599	G	C	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr11	121671567	121671568	chr11:121671568:G:C	rs370976282	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	121902046	121902047	chr11:121902047:G:A	rs3802910	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	121902083	121902084	chr11:121902084:T:A	rs3802909	T	A	T	Sox1_MA0870.1	19	0	+	0	0	.
chr11	121964593	121964594	chr11:121964594:C:G	rs12281773	C	G	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr11	121993257	121993258	chr11:121993258:C:T	rs6589903	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr11	122334458	122334459	chr11:122334459:A:G	rs4936687	A	G	G	Sox1_MA0870.1	14	1	+	6.3386290474062665	6.513960284473311	AAAAATAGCATTGCA
chr11	122629186	122629187	chr11:122629187:A:G	rs11607161	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr11	122629204	122629205	chr11:122629205:T:C	rs115741963	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr11	122730325	122730326	chr11:122730326:A:G	rs7936300	A	G	a	Sox1_MA0870.1	5	1	-	4.416240311273985	-2.4869244473737746	CACAATGTGAGTGCA
chr11	122738241	122738242	chr11:122738242:T:C	rs7111632	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr11	122738242	122738243	chr11:122738243:G:A	rs7126129	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr11	122744643	122744644	chr11:122744644:C:T	rs111506384	C	T	T	Sox1_MA0870.1	9	1	-	4.037752509119027	10.946507288434248	TACACTTGCGTTGTC
chr11	122843101	122843102	chr11:122843102:A:G	rs2887851	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr11	122848025	122848026	chr11:122848026:G:A	rs73602749	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr11	122852733	122852734	chr11:122852734:C:T	rs76038379	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	122903149	122903150	chr11:122903150:T:G	rs374082084	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr11	123064378	123064379	chr11:123064379:A:G	rs2276078	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr11	123188202	123188203	chr11:123188203:C:G	rs61904434	C	G	C	Sox1_MA0870.1	14	1	-	3.702787060450347	3.9174597436870457	AACAATTACAGAGCG
chr11	123362600	123362601	chr11:123362601:T:C	rs7130954	T	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr11	123381755	123381756	chr11:123381756:T:C	rs377719767	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	123470880	123470881	chr11:123470881:T:A	rs34057425	T	A	T	Sox1_MA0870.1	21	0	+	0	0	.
chr11	123511347	123511348	chr11:123511348:A:G	rs187245184	A	G	A	Sox1_MA0870.1	4	1	+	4.637545708684775	-2.140032545485414	CCCAATGGCAGTGCG
chr11	123511358	123511359	chr11:123511359:G:T	chr11:123511359:G:T	G	T	G	Sox1_MA0870.1	15	0	+	0	0	.
chr11	123546689	123546690	chr11:123546690:T:G	rs73027953	T	G	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr11	123559266	123559267	chr11:123559267:G:A	rs702737	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	123559281	123559282	chr11:123559282:C:G	rs702736	C	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr11	123567409	123567410	chr11:123567410:A:C	rs850293	A	C	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	124177364	124177365	chr11:124177365:C:T	rs4936905	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr11	124328765	124328766	chr11:124328766:G:A	rs140588245	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr11	124423736	124423737	chr11:124423737:A:G	rs10790676	A	G	G	Sox1_MA0870.1	33	0	-	0	0	.
chr11	124538319	124538320	chr11:124538320:T:C	rs7112283	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr11	124750250	124750251	chr11:124750251:G:T	rs11219769	G	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	124811782	124811783	chr11:124811783:A:C	rs594367	A	C	A	Sox1_MA0870.1	29	0	-	0	0	.
chr11	124826021	124826022	chr11:124826022:A:G	rs111285852	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr11	125132715	125132716	chr11:125132716:C:A	rs78168465	C	A	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	125321946	125321947	chr11:125321947:T:C	rs10893370	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr11	125453301	125453302	chr11:125453302:G:T	rs10893382	G	T	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr11	125517626	125517627	chr11:125517627:G:A	rs189740772	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr11	125585664	125585665	chr11:125585665:T:C	rs111877163	T	C	T	Sox1_MA0870.1	5	1	+	9.065774280084206	2.1626095214364462	AACAATAGTATTGCA
chr11	125958201	125958202	chr11:125958202:A:G	rs2186754	A	G	G	Sox1_MA0870.1	13	1	-	4.873425857382033	2.6957705599310384	TCCAAAAGCATTGTG
chr11	125978523	125978524	chr11:125978524:A:C	rs636641	A	C	A	Sox1_MA0870.1	16	0	-	0	0	.
chr11	125981159	125981160	chr11:125981160:A:G	rs564214	A	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr11	125990245	125990246	chr11:125990246:T:C	rs541614757	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr11	125998737	125998738	chr11:125998738:T:C	rs640478	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr11	126034827	126034828	chr11:126034828:A:G	chr11:126034828:A:G	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr11	126072244	126072245	chr11:126072245:C:A	rs525316	C	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr11	126081892	126081893	chr11:126081893:A:G	rs583194	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr11	126267958	126267959	chr11:126267959:G:A	rs7130615	G	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr11	126357827	126357828	chr11:126357828:G:T	rs7928577	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr11	126583206	126583207	chr11:126583207:C:G	rs74542833	C	G	C	Sox1_MA0870.1	31	0	-	0	0	.
chr11	126634409	126634410	chr11:126634410:A:G	rs879164	A	G	A	Sox1_MA0870.1	3	1	+	9.154239913806284	2.253650246609058	CACAATACCATAGTT
chr11	126891570	126891571	chr11:126891571:C:A	rs12271047	C	A	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr11	126891603	126891604	chr11:126891604:C:G	chr11:126891604:C:G	C	G	C	Sox1_MA0870.1	28	0	+	0	0	.
chr11	126915580	126915581	chr11:126915581:C:T	rs75596471	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr11	126915615	126915616	chr11:126915616:C:A	rs78688752	C	A	C	Sox1_MA0870.1	32	0	+	0	0	.
chr11	127475378	127475379	chr11:127475379:G:A	rs7930764	G	A	G	Sox1_MA0870.1	9	1	+	3.356362864170217	10.265117643485437	AGCACTTCCGTTGTT
chr11	127485659	127485660	chr11:127485660:G:C	rs76759928	G	C	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr11	127836504	127836505	chr11:127836505:T:C	rs12421672	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr11	127993476	127993477	chr11:127993477:T:G	rs71479982	T	G	T	Sox1_MA0870.1	7	1	+	7.33478482321844	7.379396375506346	CACAATTTGAGTGTG
chr11	127993487	127993488	chr11:127993488:C:T	rs2015798	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr11	128026579	128026580	chr11:128026580:A:G	rs1648176	A	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr11	128039916	128039917	chr11:128039917:A:G	rs114555656	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	128133941	128133942	chr11:128133942:C:T	rs1346110	C	T	C	Sox1_MA0870.1	8	1	-	5.629134408739866	3.5064677473219885	AACAATTTGATTTTT
chr11	128343227	128343228	chr11:128343228:A:T	rs146931870	A	T	A	Sox1_MA0870.1	16	0	-	0	0	.
chr11	128421733	128421734	chr11:128421734:C:G	rs7127295	C	G	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr11	128485255	128485256	chr11:128485256:G:A	rs10893878	G	A	A	Sox1_MA0870.1	8	1	-	5.052933630082071	0.8713240834447888	ATCAATTACCTTGTC
chr11	128532401	128532402	chr11:128532402:G:T	rs114049684	G	T	g	Sox1_MA0870.1	12	1	+	6.207378514460586	-0.7013762648546339	GGCACTACCATTGCC
chr11	128697116	128697117	chr11:128697117:C:G	chr11:128697117:C:G	C	G	C	Sox1_MA0870.1	29	0	-	0	0	.
chr11	129130975	129130976	chr11:129130976:C:T	rs653950	C	T	T	Sox1_MA0870.1	22	0	-	0	0	.
chr11	129287436	129287437	chr11:129287437:C:G	rs4480555	C	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr11	129428216	129428217	chr11:129428217:A:G	rs12573893	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr11	129593164	129593165	chr11:129593165:C:T	rs10894076	C	T	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr11	129681497	129681498	chr11:129681498:A:G	rs11221802	A	G	a	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	129927373	129927374	chr11:129927374:A:G	rs10791058	A	G	G	Sox1_MA0870.1	11	1	-	8.265597827128294	3.31020284131796	CACAATAGTATTGGT
chr11	130014375	130014376	chr11:130014376:A:T	rs76259790	A	T	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr11	130014401	130014402	chr11:130014402:G:A	rs57794986	G	A	A	Sox1_MA0870.1	10	1	+	5.661428247458595	1.0938560918858213	TAAAATTACAGTGTT
chr11	130179998	130179999	chr11:130179999:C:T	rs766538515	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr11	130201003	130201004	chr11:130201004:A:G	rs513461	A	G	G	Sox1_MA0870.1	11	1	-	7.0626728454395415	2.107277859629207	GTCACTATCATTGGT
chr11	130204120	130204121	chr11:130204121:G:A	rs73038968	G	A	G	Sox1_MA0870.1	11	1	-	4.05863967410334	9.014034659913673	ACCAATTACAGCGTG
chr11	130444568	130444569	chr11:130444569:T:G	rs61913897	T	G	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr11	130531411	130531412	chr11:130531412:G:A	rs3134450	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr11	130624452	130624453	chr11:130624453:C:G	rs73574020	C	G	C	Sox1_MA0870.1	34	0	-	0	0	.
chr11	130759226	130759227	chr11:130759227:C:A	rs10894239	C	A	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr11	130825876	130825877	chr11:130825877:C:T	rs114579854	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr11	130830640	130830641	chr11:130830641:C:T	rs75618525	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr11	130873938	130873939	chr11:130873939:T:C	rs75225772	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr11	130894553	130894554	chr11:130894554:G:T	rs11222379	G	T	G	Sox1_MA0870.1	32	0	-	0	0	.
chr11	131041635	131041636	chr11:131041636:C:T	rs4937588	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	131041653	131041654	chr11:131041654:G:T	rs185703348	G	T	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr11	131240413	131240414	chr11:131240414:T:C	rs73581417	T	C	T	Sox1_MA0870.1	5	1	+	4.096740164510367	-2.8064245941373915	AGCAATATCATTTCT
chr11	131511502	131511503	chr11:131511503:T:C	rs415448	T	C	T	Sox1_MA0870.1	9	1	-	7.751170418681525	0.842415639366304	GGCACTAGCATTGCT
chr11	131626812	131626813	chr11:131626813:T:C	rs2512871	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr11	131697080	131697081	chr11:131697081:G:C	rs182382928	G	C	G	Sox1_MA0870.1	27	0	-	0	0	.
chr11	131697081	131697082	chr11:131697082:G:T	rs187399025	G	T	G	Sox1_MA0870.1	26	0	-	0	0	.
chr11	131701505	131701506	chr11:131701506:G:C	rs2658863	G	C	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr11	131886433	131886434	chr11:131886434:G:T	rs1036434	G	T	G	Sox1_MA0870.1	17	0	-	0	0	.
chr11	131933119	131933120	chr11:131933120:C:T	rs538292219	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr11	132079721	132079722	chr11:132079722:G:C	rs11222905	G	C	C	Sox1_MA0870.1	10	1	+	4.388786791655247	-0.17878536391752675	GACACTAAAAGTGTA
chr11	132175196	132175197	chr11:132175197:A:G	rs7950239	A	G	G	Sox1_MA0870.1	11	1	-	4.443309508274844	-0.5120854775354894	ACCAACACCATTGCT
chr11	132209263	132209264	chr11:132209264:T:C	rs6590630	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr11	132519331	132519332	chr11:132519332:C:T	rs554547	C	T	T	Sox1_MA0870.1	27	0	+	0	0	.
chr11	132714552	132714553	chr11:132714553:G:A	rs1793258	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	133062768	133062769	chr11:133062769:C:T	rs10894645	C	T	C	Sox1_MA0870.1	4	1	+	5.354730317276454	0.5339649977314834	AACCCTGTCATTGAT
chr11	133069704	133069705	chr11:133069705:G:A	rs58936969	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr11	133171741	133171742	chr11:133171742:C:T	rs4937755	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr11	133220135	133220136	chr11:133220136:G:A	rs571958	G	A	G	Sox1_MA0870.1	7	1	+	4.7038236983991615	5.100802026195669	GACACTGGCAGTGGA
chr11	133514180	133514181	chr11:133514181:T:C	rs11824805	T	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr11	133816210	133816211	chr11:133816211:C:G	rs4936209	C	G	C	Sox1_MA0870.1	26	0	-	0	0	.
chr11	133933382	133933383	chr11:133933383:T:C	rs486560	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr11	134150721	134150722	chr11:134150722:C:T	rs12289084	C	T	C	Sox1_MA0870.1	2	1	+	8.875601891736457	1.9668471124212359	TACAATAACATTTTT
chr11	134418808	134418809	chr11:134418809:G:A	rs116746980	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr11	134644852	134644853	chr11:134644853:A:G	rs3018010	A	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr11	134663927	134663928	chr11:134663928:C:T	rs11825865	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr11	134741070	134741071	chr11:134741071:C:T	rs60622467	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr11	134744288	134744289	chr11:134744289:T:G	rs12807834	T	G	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr11	134754776	134754777	chr11:134754777:A:G	rs10894870	A	G	A	Sox1_MA0870.1	0	1	-	6.926665347603001	7.629042104750481	TACAATTGCAGTGAA
chr11	134894080	134894081	chr11:134894081:C:T	rs1824830	C	T	c	Sox1_MA0870.1	13	1	+	4.04138104843821	6.219036345889204	AGCACAACCATTGCT
chr11	134894098	134894099	chr11:134894099:C:G	rs4495910	C	G	C	Sox1_MA0870.1	31	0	+	0	0	.
chr11	134994644	134994645	chr11:134994645:A:G	chr11:134994645:A:G	A	G	.	Sox1_MA0870.1	28	0	-	0	0	.
chr11	134994658	134994659	chr11:134994659:G:A	rs76048371	G	A	.	Sox1_MA0870.1	14	1	-	4.392706669444886	5.90371607392629	CTGAATAGCATTGTC
chr11	135070357	135070358	chr11:135070358:C:G	rs11604294	C	G	.	Sox1_MA0870.1	28	0	-	0	0	.
chr12	49219	49220	chr12:49220:C:A	rs11061693	C	A	.	Sox1_MA0870.1	2	1	-	6.065940427599417	6.065940427599417	AAGAATTCCATTGAT
chr12	54049	54050	chr12:54050:C:T	rs901013837	C	T	.	Sox1_MA0870.1	7	1	+	3.980826718487164	3.9689976659387907	CTCAAAGCCAGTGTT
chr12	92701	92702	chr12:92702:G:C	rs11063793	G	C	.	Sox1_MA0870.1	32	0	-	0	0	.
chr12	119781	119782	chr12:119782:C:G	rs10849572	C	G	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	199796	199797	chr12:199797:T:C	rs186702321	T	C	T	Sox1_MA0870.1	10	1	+	3.6587830449303818	-3.1499140392059513	GACAAGCCCATTGTT
chr12	304571	304572	chr12:304572:C:T	rs116970621	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	402207	402208	chr12:402208:T:C	rs78985787	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	507536	507537	chr12:507537:C:T	rs115796906	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr12	513962	513963	chr12:513963:A:G	rs35882350	A	G	a	Sox1_MA0870.1	-3	0	+	0	0	.
chr12	586883	586884	chr12:586884:C:T	rs4980945	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr12	586911	586912	chr12:586912:A:G	rs2607936	A	G	G	Sox1_MA0870.1	5	1	-	3.2244502833103237	-3.6787144753374355	CACAATACCAGAGCC
chr12	647457	647458	chr12:647458:C:T	rs578017419	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	647458	647459	chr12:647459:A:G	rs539168440	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	810790	810791	chr12:810791:G:A	rs36092349	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr12	1132006	1132007	chr12:1132007:G:T	rs79340587	G	T	G	Sox1_MA0870.1	2	1	-	3.8419292051058753	-3.0668255742093455	CACACAGTCATTGCC
chr12	1307425	1307426	chr12:1307426:C:T	rs16928347	C	T	T	Sox1_MA0870.1	10	1	-	7.828003568957637	3.2604314133848646	CTCAATTTCAGTGTG
chr12	1374590	1374591	chr12:1374591:C:T	rs2158447	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr12	1474795	1474796	chr12:1474796:A:G	rs7973873	A	G	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr12	1521388	1521389	chr12:1521389:A:G	rs12810561	A	G	A	Sox1_MA0870.1	0	1	+	6.366091824846684	5.02396868203993	AACCATTTCATTGAC
chr12	1545128	1545129	chr12:1545129:G:A	rs35034932	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	1551976	1551977	chr12:1551977:A:G	rs7315539	A	G	G	Sox1_MA0870.1	1	1	-	4.841718405641679	4.34986226795832	CTCAATTACAGTGGC
chr12	1575487	1575488	chr12:1575488:T:C	rs7976490	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr12	1607473	1607474	chr12:1607474:T:G	rs905781813	T	G	T	Sox1_MA0870.1	21	0	+	0	0	.
chr12	1792318	1792319	chr12:1792319:G:T	rs1044825	G	T	T	Sox1_MA0870.1	14	1	-	5.137107594063014	4.747103673759271	CACACTTACATTATC
chr12	1955467	1955468	chr12:1955468:A:G	rs35252166	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr12	1956203	1956204	chr12:1956204:T:C	rs2108638	T	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr12	2095578	2095579	chr12:2095579:G:A	rs116989975	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	2450831	2450832	chr12:2450832:G:A	rs4765685	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr12	3159071	3159072	chr12:3159072:A:G	rs4766053	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr12	3219244	3219245	chr12:3219245:T:C	rs73043504	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr12	3267606	3267607	chr12:3267607:G:C	rs114884165	G	C	G	Sox1_MA0870.1	22	0	+	0	0	.
chr12	3481571	3481572	chr12:3481572:C:T	rs77096342	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr12	3531186	3531187	chr12:3531187:A:G	rs115477719	A	G	A	Sox1_MA0870.1	11	1	-	3.7902886265416824	-1.1651063592686521	CACACAGCCAGTGTC
chr12	3531581	3531582	chr12:3531582:A:G	rs10848873	A	G	A	Sox1_MA0870.1	5	1	-	3.5637250057105687	-3.3394397529371918	CAAAATGGCATTGCA
chr12	3763974	3763975	chr12:3763975:A:T	rs34789591	A	T	T	Sox1_MA0870.1	31	0	-	0	0	.
chr12	3995966	3995967	chr12:3995967:A:G	rs12810273	A	G	A	Sox1_MA0870.1	14	1	-	5.41729113154417	3.906281727062765	AACAATATCATCTTT
chr12	3995972	3995973	chr12:3995973:G:A	rs12831976	G	A	G	Sox1_MA0870.1	8	1	-	5.41729113154417	1.2356815849068883	AACAATATCATCTTT
chr12	4228756	4228757	chr12:4228757:C:T	rs10774210	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr12	4355263	4355264	chr12:4355264:T:C	rs12422543	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	4355291	4355292	chr12:4355292:C:A	rs12230757	C	A	C	Sox1_MA0870.1	24	0	+	0	0	.
chr12	4418155	4418156	chr12:4418156:C:T	rs2160875	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	4566130	4566131	chr12:4566131:G:A	rs530118944	G	A	G	Sox1_MA0870.1	10	1	+	2.8507939050083504	-1.7167782505644227	CCCACTGTCAGTGCC
chr12	4649621	4649622	chr12:4649622:A:G	rs2270134	A	G	A	Sox1_MA0870.1	5	1	-	4.539676644454364	-2.363488114193395	ATCATTTCCATTGTG
chr12	4664225	4664226	chr12:4664226:G:A	rs141104345	G	A	G	Sox1_MA0870.1	12	1	+	8.028907832946919	1.1201530536316988	AACACTAAGAGTGTG
chr12	4710300	4710301	chr12:4710301:A:C	rs7957766	A	C	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	4828423	4828424	chr12:4828424:C:T	rs2359468	C	T	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr12	4836848	4836849	chr12:4836849:T:C	rs7955352	T	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr12	5065486	5065487	chr12:5065487:T:G	rs74779240	T	G	T	Sox1_MA0870.1	1	1	-	7.614522644575849	3.8453822597313487	TACAAATACATTGCT
chr12	5189350	5189351	chr12:5189351:C:T	rs2159601	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	5478150	5478151	chr12:5478151:A:T	rs73034407	A	T	A	Sox1_MA0870.1	7	1	+	5.8074756559836	5.365885775899185	CACAATAAGATTTTT
chr12	5564250	5564251	chr12:5564251:A:T	rs10849294	A	T	T	Sox1_MA0870.1	14	1	+	5.37520747007735	7.276220794862498	CACACTTGCAGTGGA
chr12	5564260	5564261	chr12:5564261:G:A	rs10849295	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr12	5566605	5566606	chr12:5566606:G:A	rs79121802	G	A	G	Sox1_MA0870.1	4	1	-	8.035709136942259	3.214943817397289	GCCACTATCATTGCT
chr12	5665394	5665395	chr12:5665395:C:T	rs251776	C	T	C	Sox1_MA0870.1	13	1	+	3.6332304485258407	5.810885745976835	GACAATGGCTTTGCG
chr12	5722141	5722142	chr12:5722142:A:G	rs11063835	A	G	A	Sox1_MA0870.1	10	1	-	9.300331447086105	2.491634362949771	CACAAAATCATTGTG
chr12	5742894	5742895	chr12:5742895:C:T	rs12580223	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr12	5742898	5742899	chr12:5742899:G:A	rs10849330	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr12	5774603	5774604	chr12:5774604:C:T	rs7135999	C	T	T	Sox1_MA0870.1	30	0	-	0	0	.
chr12	5806741	5806742	chr12:5806742:T:C	rs3782659	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	5844674	5844675	chr12:5844675:T:A	rs185875765	T	A	T	Sox1_MA0870.1	14	1	+	9.03056297454775	7.129549649762603	GACAATATCATTTTT
chr12	5951001	5951002	chr12:5951002:A:G	rs57378434	A	G	G	Sox1_MA0870.1	5	1	-	5.2016995384514235	-1.7014652201963334	AATACTTTCAGTGTT
chr12	6072468	6072469	chr12:6072469:G:A	rs55907031	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr12	6072486	6072487	chr12:6072487:C:T	rs185148953	C	T	C	Sox1_MA0870.1	13	1	+	5.061918564189719	7.239573861640713	AACATTGTCATTGCG
chr12	6171417	6171418	chr12:6171418:A:G	rs10744699	A	G	a	Sox1_MA0870.1	18	0	+	0	0	.
chr12	6358526	6358527	chr12:6358527:T:C	rs73261482	T	C	t	Sox1_MA0870.1	18	0	-	0	0	.
chr12	6367725	6367726	chr12:6367726:A:G	rs7963228	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	6371802	6371803	chr12:6371803:T:C	rs4764587	T	C	C	Sox1_MA0870.1	4	1	-	6.732724145980521	-0.04485410818966573	AACAATAATAATGTT
chr12	6495938	6495939	chr12:6495939:C:A	rs7960757	C	A	A	Sox1_MA0870.1	8	1	+	5.642326069344076	-0.25084358497413695	ACCAATTCCTTTGTT
chr12	6533066	6533067	chr12:6533067:G:A	rs376352456	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr12	6556671	6556672	chr12:6556672:C:T	rs570885827	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr12	6859151	6859152	chr12:6859152:T:C	chr12:6859152:T:C	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr12	7064315	7064316	chr12:7064316:C:T	rs7965055	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr12	7257883	7257884	chr12:7257884:A:G	rs12821021	A	G	A	Sox1_MA0870.1	11	1	-	5.818509369249341	0.8631143834390069	ACCCATGACATTGTC
chr12	7351780	7351781	chr12:7351781:T:A	rs7350585	T	A	T	Sox1_MA0870.1	29	0	-	0	0	.
chr12	7608643	7608644	chr12:7608644:G:T	rs7302914	G	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	7679850	7679851	chr12:7679851:A:C	rs7979377	A	C	C	Sox1_MA0870.1	20	0	+	0	0	.
chr12	7865941	7865942	chr12:7865942:C:A	rs11056210	C	A	c	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	7870679	7870680	chr12:7870680:G:T	rs10047605	G	T	g	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	8083226	8083227	chr12:8083227:C:A	rs370126021	C	A	A	Sox1_MA0870.1	3	1	+	4.458365962449546	9.544130887487722	AACCATATGAGTGTG
chr12	8083240	8083241	chr12:8083241:C:T	rs149241515	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr12	8200105	8200106	chr12:8200106:A:G	rs11043930	A	G	a	Sox1_MA0870.1	10	1	-	5.579754899069721	-1.2289421850666113	GACACTGGCATTTTT
chr12	8201143	8201144	chr12:8201144:G:C	rs4326876	G	C	g	Sox1_MA0870.1	-18	0	-	0	0	.
chr12	8320359	8320360	chr12:8320360:T:C	rs116975627	T	C	.	Sox1_MA0870.1	22	0	-	0	0	.
chr12	8389019	8389020	chr12:8389020:T:C	rs149903928	T	C	.	Sox1_MA0870.1	10	1	+	9.958162890964555	3.1494658068282204	TACACTGCCATTGTA
chr12	8396022	8396023	chr12:8396023:G:C	rs11535987	G	C	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	8829048	8829049	chr12:8829049:C:G	rs4883181	C	G	C	Sox1_MA0870.1	7	1	-	5.0890684982939245	5.056285998554391	CACACTTGAATTGCT
chr12	9164176	9164177	chr12:9164177:T:C	rs3213831	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	9257543	9257544	chr12:9257544:G:A	rs34333	G	A	A	Sox1_MA0870.1	8	1	-	7.1439586336811045	2.962349087043823	AACCATTTCATTGCA
chr12	9282647	9282648	chr12:9282648:C:T	rs1549426	C	T	.	Sox1_MA0870.1	13	1	-	3.812105792926286	4.109127492974199	AAAACTTCCATTGGT
chr12	9390887	9390888	chr12:9390888:C:G	rs9634110	C	G	c	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	9449766	9449767	chr12:9449767:T:C	rs34364780	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr12	9449768	9449769	chr12:9449769:G:C	rs60859240	G	C	G	Sox1_MA0870.1	18	0	-	0	0	.
chr12	9449783	9449784	chr12:9449784:T:G	rs61914756	T	G	T	Sox1_MA0870.1	3	1	-	4.035538828093834	-1.050226096944342	CTCACTGGGATTGTC
chr12	9449786	9449787	chr12:9449787:G:C	rs10743730	G	C	G	Sox1_MA0870.1	0	1	-	4.035538828093834	3.9297130338420607	CTCACTGGGATTGTC
chr12	9449803	9449804	chr12:9449804:A:C	rs77723291	A	C	a	Sox1_MA0870.1	-17	0	-	0	0	.
chr12	9774027	9774028	chr12:9774028:G:A	rs10844749	G	A	A	Sox1_MA0870.1	31	0	+	0	0	.
chr12	9936979	9936980	chr12:9936980:G:T	rs76091351	G	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	9936993	9936994	chr12:9936994:G:C	rs7967565	G	C	G	Sox1_MA0870.1	5	1	+	3.5262190236886886	3.5262190236886886	AACACGTGCAGTGTG
chr12	10227831	10227832	chr12:10227832:T:G	rs7966224	T	G	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	10397741	10397742	chr12:10397742:A:T	rs1351112	A	T	a	Sox1_MA0870.1	31	0	-	0	0	.
chr12	10559022	10559023	chr12:10559023:C:T	rs4237928	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr12	10670308	10670309	chr12:10670309:T:C	rs7967162	T	C	c	Sox1_MA0870.1	27	0	-	0	0	.
chr12	10851668	10851669	chr12:10851669:A:G	rs11611410	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr12	10901648	10901649	chr12:10901649:A:C	rs2418219	A	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr12	11039447	11039448	chr12:11039448:C:T	rs72475497	C	T	c	Sox1_MA0870.1	30	0	+	0	0	.
chr12	11360244	11360245	chr12:11360245:T:A	rs61930112	T	A	t	Sox1_MA0870.1	17	0	-	0	0	.
chr12	11648274	11648275	chr12:11648275:C:A	rs2541137	C	A	C	Sox1_MA0870.1	19	0	+	0	0	.
chr12	11867235	11867236	chr12:11867236:C:T	rs7973930	C	T	c	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	11896047	11896048	chr12:11896048:G:T	rs61247097	G	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr12	11963199	11963200	chr12:11963200:T:A	rs10772516	T	A	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	12098133	12098134	chr12:12098134:C:T	rs58960192	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr12	12168246	12168247	chr12:12168247:A:C	rs12310020	A	C	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	12172309	12172310	chr12:12172310:C:T	rs116291367	C	T	C	Sox1_MA0870.1	2	1	+	4.217501667919338	-2.6912531113958824	AACCATAACATTATC
chr12	12300165	12300166	chr12:12300166:A:G	rs10845522	A	G	a	Sox1_MA0870.1	-17	0	-	0	0	.
chr12	12379996	12379997	chr12:12379997:C:T	rs117937426	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr12	12425851	12425852	chr12:12425852:G:A	rs4763825	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr12	12466301	12466302	chr12:12466302:G:A	rs56325045	G	A	g	Sox1_MA0870.1	34	0	-	0	0	.
chr12	12466302	12466303	chr12:12466303:C:T	rs56340010	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr12	12470856	12470857	chr12:12470857:C:T	rs2287204	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr12	12613584	12613585	chr12:12613585:G:C	rs143143806	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr12	12685673	12685674	chr12:12685674:A:G	rs2160972	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr12	12864320	12864321	chr12:12864321:T:C	rs11055112	T	C	t	Sox1_MA0870.1	29	0	+	0	0	.
chr12	12967916	12967917	chr12:12967917:C:T	rs1486329	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	12983553	12983554	chr12:12983554:C:T	rs735688	C	T	C	Sox1_MA0870.1	0	1	+	4.254215629416835	3.551838872269356	CTCATTAACATTGCT
chr12	13022903	13022904	chr12:13022904:G:A	rs542429385	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	13190900	13190901	chr12:13190901:G:A	rs5010913	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr12	13204330	13204331	chr12:13204331:G:A	rs4597146	G	A	A	Sox1_MA0870.1	10	1	+	10.3283487170721	5.760776561499327	AACAATAACAGTGGC
chr12	13232875	13232876	chr12:13232876:G:C	rs12321521	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr12	13384903	13384904	chr12:13384904:C:T	rs4313665	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr12	13431065	13431066	chr12:13431066:G:A	rs4763987	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr12	13570457	13570458	chr12:13570458:T:G	rs1806195	T	G	T	Sox1_MA0870.1	16	0	-	0	0	.
chr12	13580794	13580795	chr12:13580795:A:G	rs731086	A	G	A	Sox1_MA0870.1	9	1	+	7.233811156737581	0.3250563774223605	AACAATTCCATTTCT
chr12	13805428	13805429	chr12:13805429:C:G	rs10845841	C	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	14101712	14101713	chr12:14101713:G:A	rs11055763	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr12	14307809	14307810	chr12:14307810:C:T	rs111353704	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	14362769	14362770	chr12:14362770:C:T	rs7311765	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr12	14367002	14367003	chr12:14367003:A:T	rs535647567	A	T	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr12	14373445	14373446	chr12:14373446:A:G	rs114215108	A	G	A	Sox1_MA0870.1	4	1	+	5.697149212116872	-1.0804290420533165	AACAATGGGAGTGCA
chr12	14396065	14396066	chr12:14396066:G:A	rs7967870	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	14411276	14411277	chr12:14411277:G:A	rs113137202	G	A	G	Sox1_MA0870.1	12	1	+	5.229727022538009	-1.6790277567772112	ATCCATATCATTGCC
chr12	14418879	14418880	chr12:14418880:G:A	rs7967823	G	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr12	14483087	14483088	chr12:14483088:A:G	rs112731443	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr12	14520183	14520184	chr12:14520184:C:G	rs74439732	C	G	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	14591533	14591534	chr12:14591534:G:A	rs2417373	G	A	g	Sox1_MA0870.1	-17	0	-	0	0	.
chr12	14858789	14858790	chr12:14858790:T:C	rs7971527	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr12	14876508	14876509	chr12:14876509:G:C	rs725444	G	C	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr12	15072598	15072599	chr12:15072599:T:C	rs116921326	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr12	15114637	15114638	chr12:15114638:G:A	rs374197279	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr12	15152226	15152227	chr12:15152227:T:C	rs3748303	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	15154609	15154610	chr12:15154610:A:G	rs141593123	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	15348255	15348256	chr12:15348256:G:A	rs560087300	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	16194373	16194374	chr12:16194374:G:A	rs3942536	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr12	16329605	16329606	chr12:16329606:A:G	rs34685194	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr12	16389906	16389907	chr12:16389907:T:C	rs1012536	T	C	C	Sox1_MA0870.1	33	0	-	0	0	.
chr12	17467591	17467592	chr12:17467592:C:G	rs630176	C	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	17536642	17536643	chr12:17536643:G:T	rs2728805	G	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr12	17544509	17544510	chr12:17544510:A:G	rs7962335	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr12	17577819	17577820	chr12:17577820:G:A	rs1163771	G	A	A	Sox1_MA0870.1	30	0	+	0	0	.
chr12	17878890	17878891	chr12:17878891:G:T	rs11519181	G	T	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	18250175	18250176	chr12:18250176:A:G	rs12832101	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr12	18703889	18703890	chr12:18703890:C:A	rs901528	C	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	19235501	19235502	chr12:19235502:T:C	rs4430567	T	C	T	Sox1_MA0870.1	13	1	+	6.258789954560184	4.081134657109191	AACACTTACAATGTG
chr12	19239367	19239368	chr12:19239368:G:C	rs118163426	G	C	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr12	19350251	19350252	chr12:19350252:T:C	rs66752357	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	19370073	19370074	chr12:19370074:G:C	rs142345517	G	C	G	Sox1_MA0870.1	10	1	+	5.246311090739331	0.6787389351665586	AAGACTTGCAGTGTT
chr12	19456944	19456945	chr12:19456945:C:A	rs12822904	C	A	C	Sox1_MA0870.1	29	0	-	0	0	.
chr12	19482381	19482382	chr12:19482382:A:G	rs7310311	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr12	19842691	19842692	chr12:19842692:C:A	rs11044895	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	19971250	19971251	chr12:19971251:A:G	rs77804611	A	G	A	Sox1_MA0870.1	10	1	-	4.425031807830909	-2.383665276305424	GTCAGTAACATTGTA
chr12	20077422	20077423	chr12:20077423:T:C	rs4762746	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	20235232	20235233	chr12:20235233:A:G	rs274989	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr12	20249232	20249233	chr12:20249233:A:G	rs61911303	A	G	A	Sox1_MA0870.1	12	1	-	6.166964706766969	6.166964706766969	ATCAATTGCATTTTT
chr12	20308669	20308670	chr12:20308670:A:T	rs1373570	A	T	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr12	20424016	20424017	chr12:20424017:G:A	rs77540872	G	A	g	Sox1_MA0870.1	16	0	+	0	0	.
chr12	20457904	20457905	chr12:20457905:T:C	rs7487173	T	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr12	20525424	20525425	chr12:20525425:T:C	rs12304514	T	C	T	Sox1_MA0870.1	0	1	-	3.911111238791158	2.568988095984405	AACAACAACATTATT
chr12	20527422	20527423	chr12:20527423:A:G	rs7489188	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr12	20591513	20591514	chr12:20591514:A:G	rs10770673	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr12	21170233	21170234	chr12:21170234:T:C	rs79546646	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr12	21305725	21305726	chr12:21305726:T:C	rs11838023	T	C	T	Sox1_MA0870.1	4	1	-	5.930143277709041	-0.8474349764611478	AACAATGACATTAAT
chr12	21439265	21439266	chr12:21439266:A:C	rs11046048	A	C	A	Sox1_MA0870.1	11	1	-	8.593541374389176	1.6908086875323418	CACAAATACATTGTA
chr12	21666732	21666733	chr12:21666733:G:A	rs7316427	G	A	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	21666767	21666768	chr12:21666768:T:A	rs7301883	T	A	T	Sox1_MA0870.1	16	0	+	0	0	.
chr12	22396184	22396185	chr12:22396185:C:A	rs11046413	C	A	C	Sox1_MA0870.1	31	0	+	0	0	.
chr12	22702911	22702912	chr12:22702912:T:C	rs10770920	T	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr12	23295751	23295752	chr12:23295752:A:G	chr12:23295752:A:G	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr12	23727554	23727555	chr12:23727555:T:C	rs7980042	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	23778706	23778707	chr12:23778707:T:C	rs7307522	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr12	24300518	24300519	chr12:24300519:G:A	rs565934	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr12	24707564	24707565	chr12:24707565:C:T	rs11047582	C	T	C	Sox1_MA0870.1	0	1	+	6.088149041785464	5.385772284637984	CACACCGACATTGTT
chr12	24945368	24945369	chr12:24945369:G:A	rs17316319	G	A	G	Sox1_MA0870.1	12	1	+	5.886728218446292	-1.022026560868929	TACAATCCCATTGCA
chr12	24979381	24979382	chr12:24979382:C:T	rs2728648	C	T	c	Sox1_MA0870.1	-15	0	-	0	0	.
chr12	25012978	25012979	chr12:25012979:A:T	rs79865701	A	T	A	Sox1_MA0870.1	10	1	-	4.741133659660244	-2.0675634244760874	TACACTAACATTACT
chr12	25052813	25052814	chr12:25052814:A:G	chr12:25052814:A:G	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	25243100	25243101	chr12:25243101:C:T	rs2970532	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr12	25276805	25276806	chr12:25276806:G:C	rs10743554	G	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr12	25276833	25276834	chr12:25276834:A:C	rs10743555	A	C	C	Sox1_MA0870.1	23	0	+	0	0	.
chr12	25327422	25327423	chr12:25327423:G:A	rs75972053	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr12	25327487	25327488	chr12:25327488:C:T	rs7970784	C	T	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr12	25526997	25526998	chr12:25526998:G:A	rs1705419	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr12	25860342	25860343	chr12:25860343:C:A	rs7955006	C	A	C	Sox1_MA0870.1	24	0	-	0	0	.
chr12	25860349	25860350	chr12:25860350:C:T	rs1462717	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr12	25935490	25935491	chr12:25935491:G:C	rs16929667	G	C	G	Sox1_MA0870.1	14	1	+	6.067658752212873	6.2823314354495725	CTCAAAAGCATTGTG
chr12	25979851	25979852	chr12:25979852:G:A	rs10842648	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr12	26092976	26092977	chr12:26092977:C:T	rs10505991	C	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr12	26096059	26096060	chr12:26096060:A:T	rs77015384	A	T	A	Sox1_MA0870.1	25	0	-	0	0	.
chr12	26100772	26100773	chr12:26100773:C:T	rs16930139	C	T	T	Sox1_MA0870.1	28	0	-	0	0	.
chr12	26100783	26100784	chr12:26100784:A:G	rs10771261	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr12	26198752	26198753	chr12:26198753:A:G	rs78513390	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	26523814	26523815	chr12:26523815:T:C	rs10506001	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	26628259	26628260	chr12:26628260:T:C	rs557818382	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr12	26820771	26820772	chr12:26820772:C:T	rs182780779	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr12	26827581	26827582	chr12:26827582:G:A	rs7315029	G	A	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	26990574	26990575	chr12:26990575:G:A	rs10771314	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr12	27049242	27049243	chr12:27049243:C:A	rs115041628	C	A	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	27185825	27185826	chr12:27185826:A:T	rs79919198	A	T	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr12	27246439	27246440	chr12:27246440:A:G	rs922274	A	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr12	27335548	27335549	chr12:27335549:G:A	rs12823225	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr12	27463655	27463656	chr12:27463656:G:A	rs11049019	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr12	27463694	27463695	chr12:27463695:T:C	rs182525892	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr12	27480929	27480930	chr12:27480930:T:C	rs440144	T	C	T	Sox1_MA0870.1	5	1	+	5.1550418606667705	-1.7481228979809895	CACACTGTCAGTGGC
chr12	27610971	27610972	chr12:27610972:G:A	rs28406053	G	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr12	27674611	27674612	chr12:27674612:G:A	rs10771355	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	27782534	27782535	chr12:27782535:C:G	rs3751234	C	G	C	Sox1_MA0870.1	17	0	-	0	0	.
chr12	27810905	27810906	chr12:27810906:T:C	rs10842992	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr12	27861552	27861553	chr12:27861553:A:C	rs258410	A	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr12	27898165	27898166	chr12:27898166:T:C	rs7956700	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr12	28172370	28172371	chr12:28172371:A:G	rs11049398	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	28507175	28507176	chr12:28507176:T:A	rs7955794	T	A	T	Sox1_MA0870.1	11	1	+	5.213528590999797	-1.689204095857034	AAAACTTCCAGTGTT
chr12	28512425	28512426	chr12:28512426:C:T	rs11049684	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	28772620	28772621	chr12:28772621:A:G	rs1038211	A	G	A	Sox1_MA0870.1	0	1	+	5.953905891339948	4.611782748533195	AACAATATCCGTGCT
chr12	28941748	28941749	chr12:28941749:T:G	rs1873106	T	G	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr12	28959257	28959258	chr12:28959258:C:T	rs10506046	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr12	28959262	28959263	chr12:28959263:G:T	rs9651836	G	T	T	Sox1_MA0870.1	13	1	-	4.456115376675805	3.28824464753764	TCCAATTTCAGTGCG
chr12	29591687	29591688	chr12:29591688:C:A	rs159700	C	A	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	29614901	29614902	chr12:29614902:A:G	rs12819780	A	G	A	Sox1_MA0870.1	11	1	-	6.628420246440701	1.6730252606303666	CACAATGACAATGTC
chr12	29641058	29641059	chr12:29641059:T:C	rs10431221	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr12	29675824	29675825	chr12:29675825:A:T	rs10743669	A	T	A	Sox1_MA0870.1	4	1	+	5.90371607392629	-0.8738621802438994	CTTAATAGCATTGTT
chr12	29675833	29675834	chr12:29675834:T:C	rs10771568	T	C	T	Sox1_MA0870.1	13	1	+	5.90371607392629	3.7260607764752955	CTTAATAGCATTGTT
chr12	29741983	29741984	chr12:29741984:C:A	rs191624660	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	30088713	30088714	chr12:30088714:A:C	rs76110334	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr12	30201041	30201042	chr12:30201042:G:A	rs11613048	G	A	G	Sox1_MA0870.1	8	1	-	5.269330559191394	1.0877210125541108	AACAACAGCATTGGC
chr12	30462282	30462283	chr12:30462283:T:C	rs12582764	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr12	30661324	30661325	chr12:30661325:C:T	rs10771753	C	T	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	30840903	30840904	chr12:30840904:G:A	rs33175	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr12	31026649	31026650	chr12:31026650:T:C	rs2287454	T	C	t	Sox1_MA0870.1	10	1	+	10.743703673368783	3.9350065892324495	AGCAATTGCATTGTC
chr12	31175813	31175814	chr12:31175814:C:G	rs34016579	C	G	.	Sox1_MA0870.1	21	0	-	0	0	.
chr12	31205082	31205083	chr12:31205083:C:T	rs141633694	C	T	.	Sox1_MA0870.1	-16	0	+	0	0	.
chr12	31205083	31205084	chr12:31205084:G:A	rs147072943	G	A	.	Sox1_MA0870.1	-15	0	+	0	0	.
chr12	31215774	31215775	chr12:31215775:T:C	rs116679199	T	C	.	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	31215779	31215780	chr12:31215780:C:T	rs148727343	C	T	.	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	31669657	31669658	chr12:31669658:G:A	rs75093514	G	A	.	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	31714921	31714922	chr12:31714922:A:C	rs7295568	A	C	A	Sox1_MA0870.1	17	0	+	0	0	.
chr12	31880715	31880716	chr12:31880716:C:G	rs2799996	C	G	G	Sox1_MA0870.1	2	1	+	3.510846611457782	-3.397908167857437	CCCAATAGCTTTGTA
chr12	31958673	31958674	chr12:31958674:A:G	rs6488020	A	G	A	Sox1_MA0870.1	4	1	+	4.797050806024871	-1.9805274481453177	AGCAATTTGATTGGT
chr12	31991921	31991922	chr12:31991922:C:A	rs4931593	C	A	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	32043919	32043920	chr12:32043920:C:G	rs11051748	C	G	C	Sox1_MA0870.1	27	0	-	0	0	.
chr12	32076882	32076883	chr12:32076883:G:A	rs17512639	G	A	g	Sox1_MA0870.1	22	0	-	0	0	.
chr12	32093608	32093609	chr12:32093609:A:G	rs2652008	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr12	32140141	32140142	chr12:32140142:T:G	rs565327215	T	G	T	Sox1_MA0870.1	1	1	-	5.505332119106184	1.7361917342616846	CACAATAACATGGCA
chr12	32230585	32230586	chr12:32230586:A:G	rs2650145	A	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	32549849	32549850	chr12:32549850:G:C	rs17538095	G	C	G	Sox1_MA0870.1	12	1	+	7.324245081641099	0.4154903023258786	CACACTAGCAATGTT
chr12	32549854	32549855	chr12:32549855:G:A	rs566100690	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr12	32660905	32660906	chr12:32660906:T:C	rs115400730	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr12	32801350	32801351	chr12:32801351:C:T	rs56798911	C	T	T	Sox1_MA0870.1	8	1	+	6.612636864375395	2.431027317738113	TACACTGCCATTGAA
chr12	32821310	32821311	chr12:32821311:C:T	rs10772008	C	T	C	Sox1_MA0870.1	2	1	+	8.434012011652042	1.5252572323368212	TACAATATCATTATT
chr12	33182653	33182654	chr12:33182654:C:G	rs35846513	C	G	C	Sox1_MA0870.1	32	0	-	0	0	.
chr12	34022365	34022366	chr12:34022366:C:T	rs12372721	C	T	C	Sox1_MA0870.1	12	1	-	3.734607148475909	-3.174147630839312	CTCAATCGCATTGCC
chr12	34307416	34307417	chr12:34307417:A:G	rs7309608	A	G	.	Sox1_MA0870.1	9	1	+	6.384107212643901	-0.5246475666713194	AACAAAAACAGTGCA
chr12	35390070	35390071	chr12:35390071:G:C	rs1285247525	G	C	.	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	35512550	35512551	chr12:35512551:C:T	rs1422982802	C	T	.	Sox1_MA0870.1	-3	0	-	0	0	.
chr12	35981744	35981745	chr12:35981745:T:C	rs1299912922	T	C	.	Sox1_MA0870.1	34	0	-	0	0	.
chr12	35988407	35988408	chr12:35988408:G:C	rs1463606386	G	C	.	Sox1_MA0870.1	-3	0	-	0	0	.
chr12	36042578	36042579	chr12:36042579:G:T	rs1167853133	G	T	.	Sox1_MA0870.1	2	1	-	9.226478486325062	2.3177237070098418	CACAAAAACAGTGTT
chr12	36327780	36327781	chr12:36327781:C:G	rs1443113492	C	G	.	Sox1_MA0870.1	-5	0	-	0	0	.
chr12	36582586	36582587	chr12:36582587:A:G	rs1402924970	A	G	.	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	36624833	36624834	chr12:36624834:C:G	rs1319288470	C	G	.	Sox1_MA0870.1	26	0	-	0	0	.
chr12	36973381	36973382	chr12:36973382:C:T	rs1369607341	C	T	.	Sox1_MA0870.1	6	1	-	5.47448563155546	7.013092324696178	TACAAAGACAGTGTC
chr12	37792983	37792984	chr12:37792984:T:A	rs138881583	T	A	.	Sox1_MA0870.1	17	0	+	0	0	.
chr12	37968122	37968123	chr12:37968123:C:T	rs61177382	C	T	.	Sox1_MA0870.1	31	0	-	0	0	.
chr12	38053411	38053412	chr12:38053412:C:T	rs75580470	C	T	.	Sox1_MA0870.1	-8	0	-	0	0	.
chr12	38149505	38149506	chr12:38149506:T:C	rs61931401	T	C	t	Sox1_MA0870.1	34	0	-	0	0	.
chr12	38149536	38149537	chr12:38149537:T:C	rs11834360	T	C	t	Sox1_MA0870.1	3	1	-	3.927116105863858	-2.973473561333368	CACACTGCCCTTGTG
chr12	38149549	38149550	chr12:38149550:C:T	rs6582502	C	T	c	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	38261602	38261603	chr12:38261603:T:G	rs10880785	T	G	T	Sox1_MA0870.1	6	1	-	3.322367564942949	-2.0668314378902535	GTCACTACCAGTGGC
chr12	38393199	38393200	chr12:38393200:G:A	rs6582675	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	38549231	38549232	chr12:38549232:C:T	rs2730928	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	38785589	38785590	chr12:38785590:C:A	rs1095578	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	39239324	39239325	chr12:39239325:T:C	rs76504904	T	C	T	Sox1_MA0870.1	3	1	-	5.264392703588628	-1.636196963608596	GACACTCAGATTGTT
chr12	39442148	39442149	chr12:39442149:C:G	rs77844381	C	G	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	39442155	39442156	chr12:39442156:T:C	rs542101833	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	39451550	39451551	chr12:39451551:T:G	rs11172174	T	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	40223956	40223957	chr12:40223957:T:C	rs141560291	T	C	T	Sox1_MA0870.1	9	1	-	4.820562037928089	-2.088192741387131	AGCAAGAACATTGTA
chr12	40287602	40287603	chr12:40287603:C:A	chr12:40287603:C:A	C	A	C	Sox1_MA0870.1	23	0	+	0	0	.
chr12	40632190	40632191	chr12:40632191:A:C	rs7137846	A	C	A	Sox1_MA0870.1	11	1	-	4.990303254327673	-1.912429432529159	AGAAATAACATTGTG
chr12	40972352	40972353	chr12:40972353:A:G	rs10879443	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr12	40993852	40993853	chr12:40993853:C:T	rs1388670	C	T	-	Sox1_MA0870.1	17	0	-	0	0	.
chr12	41201786	41201787	chr12:41201787:C:T	rs1431107	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr12	41356397	41356398	chr12:41356398:A:C	rs10880060	A	C	C	Sox1_MA0870.1	2	1	+	4.005578913302584	10.914333692617804	AAAAATAACAATGTT
chr12	41441309	41441310	chr12:41441310:A:G	rs1551593	A	G	G	Sox1_MA0870.1	1	1	+	5.414358679134924	1.3160680237417832	GACAATGTCACTGCT
chr12	42118501	42118502	chr12:42118502:A:G	rs34152211	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr12	42333783	42333784	chr12:42333784:C:T	rs2406676	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr12	42333798	42333799	chr12:42333799:T:C	rs2406677	T	C	T	Sox1_MA0870.1	11	1	-	4.247888712920717	4.247888712920717	AACACTTACATAGGT
chr12	42422314	42422315	chr12:42422315:G:A	chr12:42422315:G:A	G	A	G	Sox1_MA0870.1	0	1	-	4.542382245185289	3.8400054880378085	CACATTTTCAGTGTC
chr12	42911043	42911044	chr12:42911044:G:A	rs11833990	G	A	G	Sox1_MA0870.1	7	1	+	3.200048243635637	3.597026571432145	GACAATCGCAGTGGC
chr12	42985554	42985555	chr12:42985555:T:C	rs117228757	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr12	42999581	42999582	chr12:42999582:A:T	rs75673656	A	T	A	Sox1_MA0870.1	13	1	+	6.646224550536884	9.991750577126043	GACAAATGCATTGAT
chr12	43015588	43015589	chr12:43015589:G:A	rs12369095	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	43123600	43123601	chr12:43123601:T:C	rs75116558	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr12	43198059	43198060	chr12:43198060:C:A	rs10880433	C	A	C	Sox1_MA0870.1	12	1	-	6.001290336837121	-0.9074644424781004	AACACTACTATTGGC
chr12	43208807	43208808	chr12:43208808:A:C	chr12:43208808:A:C	A	C	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	43247967	43247968	chr12:43247968:T:A	rs12229015	T	A	T	Sox1_MA0870.1	0	1	-	4.425118940617574	2.4864448349151136	AAAAAATGCATTGTT
chr12	43408189	43408190	chr12:43408190:A:C	rs78723692	A	C	A	Sox1_MA0870.1	1	1	-	4.849839154219935	4.028832745987933	TTCAAAAGCAGTGTT
chr12	43586254	43586255	chr12:43586255:C:T	rs957216	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	43588069	43588070	chr12:43588070:A:G	rs74081931	A	G	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	43625540	43625541	chr12:43625541:T:A	rs73276609	T	A	T	Sox1_MA0870.1	20	0	+	0	0	.
chr12	44054045	44054046	chr12:44054046:A:C	rs11182405	A	C	C	Sox1_MA0870.1	5	1	-	6.054111375051043	-0.8490533835967168	AACAATTTCTTTGAT
chr12	44155349	44155350	chr12:44155350:A:G	rs73290233	A	G	A	Sox1_MA0870.1	9	1	+	5.069549199111754	-1.8392055802034672	CAAAATACCATTGCA
chr12	44629614	44629615	chr12:44629615:G:A	rs7961698	G	A	A	Sox1_MA0870.1	2	1	-	7.656786201537959	0.7480314222227369	CACTATTTCATTGTA
chr12	45130738	45130739	chr12:45130739:C:T	rs79147639	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	45217818	45217819	chr12:45217819:A:G	rs3759080	A	G	G	Sox1_MA0870.1	1	1	-	5.606361919565098	5.11450578188174	GTCAATTTTATTGTA
chr12	45298039	45298040	chr12:45298040:C:T	rs76298004	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr12	45425975	45425976	chr12:45425976:T:A	rs11183027	T	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	45477848	45477849	chr12:45477849:A:C	rs2408255	A	C	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	45967347	45967348	chr12:45967348:A:T	rs117507015	A	T	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	46109034	46109035	chr12:46109035:C:G	rs12581275	C	G	C	Sox1_MA0870.1	4	1	+	6.212549210918393	1.3917838913734206	CACACTTTCATGGTT
chr12	46109037	46109038	chr12:46109038:T:C	rs138003316	T	C	T	Sox1_MA0870.1	7	1	+	6.212549210918393	6.224378263466766	CACACTTTCATGGTT
chr12	46110381	46110382	chr12:46110382:C:A	rs74655935	C	A	C	Sox1_MA0870.1	0	1	+	5.504900047315256	6.741197395870236	CACAACAACATTGCA
chr12	46134262	46134263	chr12:46134263:A:T	rs1550738	A	T	A	Sox1_MA0870.1	3	1	+	5.9983850571370585	0.4840897510597221	ATTAATGACATTGTT
chr12	46153472	46153473	chr12:46153473:T:C	rs370988699	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr12	46153522	46153523	chr12:46153523:A:G	rs12299951	A	G	a	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	46359575	46359576	chr12:46359576:C:T	rs79548763	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr12	46368312	46368313	chr12:46368313:G:C	rs59371023	G	C	G	Sox1_MA0870.1	16	0	+	0	0	.
chr12	46389177	46389178	chr12:46389178:C:G	rs73282593	C	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr12	46391092	46391093	chr12:46391093:C:G	rs74083758	C	G	C	Sox1_MA0870.1	24	0	-	0	0	.
chr12	46456049	46456050	chr12:46456050:A:T	rs55964696	A	T	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr12	46522424	46522425	chr12:46522425:C:T	rs766273094	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	46522464	46522465	chr12:46522465:A:G	rs143551100	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr12	46573280	46573281	chr12:46573281:A:G	rs11836940	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr12	46875477	46875478	chr12:46875478:T:C	rs74082953	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	47085744	47085745	chr12:47085745:C:A	rs7979008	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr12	47193898	47193899	chr12:47193899:T:A	rs182874430	T	A	T	Sox1_MA0870.1	10	1	+	4.946681303073112	-1.8620157810632203	AGCCATTTCATTGCT
chr12	47335597	47335598	chr12:47335598:A:T	rs215334	A	T	A	Sox1_MA0870.1	17	0	+	0	0	.
chr12	47366050	47366051	chr12:47366051:G:T	rs73299471	G	T	G	Sox1_MA0870.1	17	0	-	0	0	.
chr12	47366080	47366081	chr12:47366081:T:A	rs12818155	T	A	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	47367428	47367429	chr12:47367429:G:A	rs58616	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr12	47424825	47424826	chr12:47424826:C:A	rs7296045	C	A	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	47848472	47848473	chr12:47848473:A:G	rs2525044	A	G	G	Sox1_MA0870.1	5	1	-	4.3567293462692085	-2.5464354123785515	CACAATGACATGGCC
chr12	48219702	48219703	chr12:48219703:G:A	rs535950426	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr12	48513087	48513088	chr12:48513088:G:A	rs61940822	G	A	g	Sox1_MA0870.1	22	0	+	0	0	.
chr12	48787415	48787416	chr12:48787416:C:A	rs574821485	C	A	-	Sox1_MA0870.1	33	0	-	0	0	.
chr12	49098183	49098184	chr12:49098184:G:C	rs11834944	G	C	G	Sox1_MA0870.1	28	0	-	0	0	.
chr12	49180239	49180240	chr12:49180240:A:C	rs7957998	A	C	c	Sox1_MA0870.1	1	1	+	7.158512473076641	3.3893720882321428	AACAATTTCAGTATT
chr12	49215075	49215076	chr12:49215076:T:C	rs149839274	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr12	49215102	49215103	chr12:49215103:C:A	rs74091020	C	A	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	49230524	49230525	chr12:49230525:A:G	rs10783310	A	G	G	Sox1_MA0870.1	4	1	+	4.34787160714718	-2.4297066470230098	AACAATAACATCCTC
chr12	49338637	49338638	chr12:49338638:C:A	rs113002268	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	49565316	49565317	chr12:49565317:G:C	rs560645331	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr12	49822025	49822026	chr12:49822026:G:A	rs77695587	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr12	50261851	50261852	chr12:50261852:T:C	rs116539721	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	50671833	50671834	chr12:50671834:T:C	rs2684908	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr12	51038271	51038272	chr12:51038272:T:C	rs4768876	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	51199832	51199833	chr12:51199833:T:G	rs4077093	T	G	G	Sox1_MA0870.1	3	1	-	4.997922091868512	-0.08784283316966335	GCCACTGCCATTGCC
chr12	51730933	51730934	chr12:51730934:C:A	rs393897	C	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr12	51806957	51806958	chr12:51806958:C:A	rs60637	C	A	C	Sox1_MA0870.1	2	1	+	7.216624101511355	0.30786932219613516	CCCAATACCATTGAG
chr12	51824187	51824188	chr12:51824188:A:C	chr12:51824188:A:C	A	C	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr12	52074491	52074492	chr12:52074492:C:A	rs4762048	C	A	A	Sox1_MA0870.1	27	0	+	0	0	.
chr12	52146148	52146149	chr12:52146149:T:A	rs10876237	T	A	A	Sox1_MA0870.1	20	0	-	0	0	.
chr12	52205538	52205539	chr12:52205539:A:G	rs7132534	A	G	G	Sox1_MA0870.1	33	0	+	0	0	.
chr12	52229244	52229245	chr12:52229245:T:C	rs7299945	T	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr12	52282970	52282971	chr12:52282971:C:G	rs10876268	C	G	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	52305361	52305362	chr12:52305362:C:T	rs1238624628	C	T	C	Sox1_MA0870.1	0	1	-	7.5443027501267705	8.886425892933524	GACAATGTCATCGTA
chr12	52322737	52322738	chr12:52322738:G:A	rs17656443	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr12	52349460	52349461	chr12:52349461:G:C	rs17656961	G	C	G	Sox1_MA0870.1	10	1	-	5.498225351510762	10.065797507083536	AACAAAAGCACTGTT
chr12	52349483	52349484	chr12:52349484:A:T	rs1791645	A	T	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	52434418	52434419	chr12:52434419:C:T	rs759732820	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr12	52500761	52500762	chr12:52500762:A:G	rs1096278	A	G	G	Sox1_MA0870.1	9	1	+	4.875648319360163	-2.033106459955057	AACACTGCCAGCGTG
chr12	52652602	52652603	chr12:52652603:A:T	rs640027	A	T	a	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	52740910	52740911	chr12:52740911:A:C	rs7969242	A	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	52829015	52829016	chr12:52829016:G:T	rs56360506	G	T	G	Sox1_MA0870.1	8	1	-	5.075277896848014	-0.8178917574701986	GGCATTACCATTGTT
chr12	52870367	52870368	chr12:52870368:G:A	chr12:52870368:G:A	G	A	G	Sox1_MA0870.1	11	1	+	3.689367677565189	3.689367677565189	GACAATTGCAGGGCT
chr12	52870367	52870368	chr12:52870368:G:T	rs2638524	G	T	G	Sox1_MA0870.1	11	1	+	3.689367677565189	10.59210036442202	GACAATTGCAGGGCT
chr12	52872941	52872942	chr12:52872942:C:T	rs35125059	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr12	52953127	52953128	chr12:52953128:T:C	rs2682294	T	C	T	Sox1_MA0870.1	4	1	-	6.274155780848447	-0.5034224733217421	CACAATTCCCTTGTA
chr12	53327666	53327667	chr12:53327667:A:C	rs112778209	A	C	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	53658796	53658797	chr12:53658797:G:A	rs17764440	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	53721034	53721035	chr12:53721035:C:T	rs1079269	C	T	T	Sox1_MA0870.1	31	0	+	0	0	.
chr12	54280547	54280548	chr12:54280548:A:C	rs530476071	A	C	A	Sox1_MA0870.1	34	0	+	0	0	.
chr12	54359262	54359263	chr12:54359263:C:T	rs117362233	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	54647652	54647653	chr12:54647653:C:T	rs2029851	C	T	T	Sox1_MA0870.1	12	1	-	4.331984917028958	-2.5767698622862634	AGCAATTACACTGTC
chr12	54858417	54858418	chr12:54858418:C:T	rs1948139	C	T	T	Sox1_MA0870.1	31	0	-	0	0	.
chr12	54933578	54933579	chr12:54933579:G:C	rs559546193	G	C	G	Sox1_MA0870.1	30	0	+	0	0	.
chr12	54968371	54968372	chr12:54968372:C:T	rs10876674	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	54977886	54977887	chr12:54977887:C:T	rs2046686	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr12	55105392	55105393	chr12:55105393:T:C	rs9804942	T	C	t	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	55658756	55658757	chr12:55658757:G:C	rs4759184	G	C	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	55929174	55929175	chr12:55929175:C:T	rs115388761	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr12	56537443	56537444	chr12:56537444:A:G	rs2657897	A	G	A	Sox1_MA0870.1	10	1	-	5.384980543466193	-1.4237165406701402	CACAAAAATATTGTA
chr12	56537449	56537450	chr12:56537450:T:C	rs2657898	T	C	T	Sox1_MA0870.1	4	1	-	5.384980543466193	-1.3925977107039953	CACAAAAATATTGTA
chr12	56668440	56668441	chr12:56668441:A:G	rs2958123	A	G	A	Sox1_MA0870.1	3	1	+	10.462775834880043	3.5621861676828175	AACAAAAACAGTGTT
chr12	56687985	56687986	chr12:56687986:T:G	rs748825658	T	G	T	Sox1_MA0870.1	17	0	-	0	0	.
chr12	57008316	57008317	chr12:57008317:T:C	rs576529578	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr12	57104186	57104187	chr12:57104187:G:A	rs56214329	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	57372608	57372609	chr12:57372609:G:C	rs4760254	G	C	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	57899787	57899788	chr12:57899788:A:T	rs34372362	A	T	A	Sox1_MA0870.1	15	0	+	0	0	.
chr12	58311267	58311268	chr12:58311268:C:T	rs74096846	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	58311291	58311292	chr12:58311292:A:G	rs12819933	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr12	58337343	58337344	chr12:58337344:A:G	rs139127958	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr12	58443841	58443842	chr12:58443842:A:G	rs56279350	A	G	A	Sox1_MA0870.1	13	1	-	3.2127688178926403	1.0351135204416462	CACACTATCTGTGTG
chr12	58602971	58602972	chr12:58602972:A:T	rs7299125	A	T	T	Sox1_MA0870.1	10	1	-	3.3909689321500243	-3.4177281519863083	ATCAATGCCCTTGCT
chr12	59041758	59041759	chr12:59041759:A:G	rs139949018	A	G	A	Sox1_MA0870.1	11	1	-	7.231027926068604	2.2756329402582707	GACAATAACAGTATT
chr12	59041761	59041762	chr12:59041762:G:C	rs1838311	G	C	C	Sox1_MA0870.1	8	1	-	7.231027926068604	3.460524933168266	GACAATAACAGTATT
chr12	59252915	59252916	chr12:59252916:G:A	rs117572904	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr12	59452961	59452962	chr12:59452962:C:T	rs276075	C	T	T	Sox1_MA0870.1	12	1	-	4.272528241943306	-2.6362265373719143	AGCATTAGCATTGCT
chr12	59835858	59835859	chr12:59835859:A:C	rs12298193	A	C	C	Sox1_MA0870.1	13	1	-	7.477018494355887	3.834470767718815	CACTCTGACATTGTT
chr12	60310456	60310457	chr12:60310457:C:T	rs1125188	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	60489045	60489046	chr12:60489046:T:C	rs4622306	T	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	60603721	60603722	chr12:60603722:G:A	chr12:60603722:G:A	G	A	G	Sox1_MA0870.1	14	1	+	3.12479416864763	2.949462931580586	GACACTACCAGAGTG
chr12	60710406	60710407	chr12:60710407:C:T	rs273836	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr12	60799101	60799102	chr12:60799102:G:A	rs12316933	G	A	G	Sox1_MA0870.1	7	1	+	5.701464424519438	6.098442752315947	ATCAATGGCAATGTT
chr12	61167928	61167929	chr12:61167929:T:A	rs10877572	T	A	T	Sox1_MA0870.1	25	0	+	0	0	.
chr12	61308323	61308324	chr12:61308324:C:T	rs2731401	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr12	61552070	61552071	chr12:61552071:C:T	rs7979611	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr12	61812377	61812378	chr12:61812378:C:T	rs71465111	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr12	61872405	61872406	chr12:61872406:T:A	rs10492352	T	A	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	62021791	62021792	chr12:62021792:A:T	rs17705406	A	T	T	Sox1_MA0870.1	13	1	-	9.724677350481096	6.3791513238919375	AACTATTACATTGTC
chr12	62292642	62292643	chr12:62292643:C:T	rs561389242	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	64043227	64043228	chr12:64043228:G:A	rs11175239	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr12	64273619	64273620	chr12:64273620:G:A	rs10878131	G	A	A	Sox1_MA0870.1	10	1	+	4.72943759533334	0.16186543976056766	CAAAATACCAGTGCT
chr12	64361241	64361242	chr12:64361242:T:C	rs12318559	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr12	64463778	64463779	chr12:64463779:A:T	rs114115957	A	T	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr12	64758161	64758162	chr12:64758162:C:T	rs76114362	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	64758203	64758204	chr12:64758204:C:G	rs1038943	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr12	65526315	65526316	chr12:65526316:C:G	rs1271381176	C	G	C	Sox1_MA0870.1	10	1	-	5.446390117115643	0.8788179615428701	GTCAAAAGCAGTGTT
chr12	65570723	65570724	chr12:65570724:T:C	rs79573772	T	C	T	Sox1_MA0870.1	14	1	+	5.386978887495214	3.8759694830138094	AACCATATCAATGTT
chr12	65612501	65612502	chr12:65612502:G:A	rs80111982	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr12	65778990	65778991	chr12:65778991:G:C	rs2612065	G	C	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr12	65830490	65830491	chr12:65830491:T:C	chr12:65830491:T:C	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr12	65872786	65872787	chr12:65872787:A:G	rs7967707	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr12	65907781	65907782	chr12:65907782:G:C	rs118080313	G	C	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr12	66014695	66014696	chr12:66014696:T:C	rs10878360	T	C	T	Sox1_MA0870.1	6	1	-	5.713177981980808	4.17457128884009	CACACTAGCATTTTC
chr12	66108884	66108885	chr12:66108885:A:T	rs7302893	A	T	A	Sox1_MA0870.1	29	0	-	0	0	.
chr12	66399692	66399693	chr12:66399693:T:C	rs6421219	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr12	66461919	66461920	chr12:66461920:A:G	rs10219665	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr12	66644359	66644360	chr12:66644360:T:C	rs10878484	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr12	66861000	66861001	chr12:66861001:C:T	rs11176461	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	66901875	66901876	chr12:66901876:A:C	rs1504315	A	C	A	Sox1_MA0870.1	14	1	+	9.03408351326592	9.424087433569662	CACAATTGTATTGTA
chr12	66901891	66901892	chr12:66901892:C:T	rs1504314	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr12	66915705	66915706	chr12:66915706:A:C	rs147674896	A	C	A	Sox1_MA0870.1	11	1	-	4.480265371820284	-2.422467315036549	CACAAGTTCATTGCC
chr12	67303536	67303537	chr12:67303537:C:T	rs710630	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	67327690	67327691	chr12:67327691:G:T	rs145731158	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr12	67327830	67327831	chr12:67327831:A:G	rs1082702	A	G	G	Sox1_MA0870.1	7	1	+	5.530075865147298	5.133097537350789	TACAATAACATTTAT
chr12	67388078	67388079	chr12:67388079:T:C	rs7955266	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	67471928	67471929	chr12:67471929:A:G	rs17103875	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr12	67515889	67515890	chr12:67515890:T:C	rs17103930	T	C	T	Sox1_MA0870.1	7	1	-	6.770527867561043	6.373549539764534	TTCACTGACAGTGTT
chr12	67601947	67601948	chr12:67601948:C:T	rs1797700	C	T	C	Sox1_MA0870.1	12	1	-	5.801168076586771	-1.1075867027284487	AACAAAAACATAGTT
chr12	67721182	67721183	chr12:67721183:T:C	rs72648176	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	67780833	67780834	chr12:67780834:A:G	rs142037021	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr12	67962424	67962425	chr12:67962425:A:G	rs6581784	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr12	68097647	68097648	chr12:68097648:A:G	rs140860929	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	68294125	68294126	chr12:68294126:C:G	rs973328	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr12	68351670	68351671	chr12:68351671:T:C	rs12828683	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr12	68379422	68379423	chr12:68379423:G:A	rs17105404	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr12	68405326	68405327	chr12:68405327:C:G	rs10492307	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr12	68582146	68582147	chr12:68582147:T:C	rs146013034	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	68809531	68809532	chr12:68809532:G:A	rs3730495	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr12	68809743	68809744	chr12:68809744:T:A	rs1196335	T	A	T	Sox1_MA0870.1	31	0	-	0	0	.
chr12	68809773	68809774	chr12:68809774:T:G	rs3730498	T	G	T	Sox1_MA0870.1	1	1	-	6.132648920501396	2.363508535656895	GACAATAACATAGAT
chr12	69000299	69000300	chr12:69000300:G:A	rs1908676	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	69091671	69091672	chr12:69091672:A:G	rs12322915	A	G	A	Sox1_MA0870.1	4	1	+	8.157731843087571	1.3801535889173864	CTCAATTACATTGCA
chr12	69405382	69405383	chr12:69405383:C:T	rs58786840	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	69435754	69435755	chr12:69435755:C:T	rs78912173	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr12	69435798	69435799	chr12:69435799:G:C	rs13377945	G	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	69557647	69557648	chr12:69557648:A:G	rs521033	A	G	G	Sox1_MA0870.1	1	1	+	3.4618495056798704	-0.6364411497132713	CACGCTAGGATTGTT
chr12	69822269	69822270	chr12:69822270:C:T	rs762893384	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr12	70557831	70557832	chr12:70557832:T:C	rs73140118	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr12	70849627	70849628	chr12:70849628:T:A	rs150770764	T	A	T	Sox1_MA0870.1	6	1	+	4.854993809937695	5.8280425256519965	GACATTTCCATTGAT
chr12	70852715	70852716	chr12:70852716:C:G	rs7961271	C	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	70880587	70880588	chr12:70880588:A:G	rs11609457	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr12	71219091	71219092	chr12:71219092:T:C	rs1355371	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr12	71282489	71282490	chr12:71282490:A:T	rs76543553	A	T	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	71355056	71355057	chr12:71355057:G:A	rs5006248	G	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr12	71369738	71369739	chr12:71369739:T:G	rs34125145	T	G	t	Sox1_MA0870.1	4	1	-	4.711401445176545	2.754588510551327	ATCAATTTCACTGTC
chr12	71396541	71396542	chr12:71396542:T:C	rs7963475	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr12	71725180	71725181	chr12:71725181:T:C	rs76373043	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr12	71754567	71754568	chr12:71754568:C:G	rs10879331	C	G	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr12	71754570	71754571	chr12:71754571:A:G	rs147965811	A	G	A	Sox1_MA0870.1	0	1	+	5.545507859908199	4.203384717101445	ATCATTAGCATTGTG
chr12	72788714	72788715	chr12:72788715:T:C	rs11835019	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr12	73640542	73640543	chr12:73640543:A:T	rs73177752	A	T	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	73645296	73645297	chr12:73645297:C:T	rs1156726	C	T	C	Sox1_MA0870.1	13	1	+	5.783488152699766	7.961143450150761	GACAATAACCTTGCC
chr12	74328549	74328550	chr12:74328550:C:A	rs11180025	C	A	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	74338130	74338131	chr12:74338131:C:G	rs187044336	C	G	C	Sox1_MA0870.1	30	0	-	0	0	.
chr12	74338133	74338134	chr12:74338134:T:C	rs2365724	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr12	74491436	74491437	chr12:74491437:G:A	rs2605330	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr12	74619392	74619393	chr12:74619393:C:A	rs2605353	C	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr12	74836783	74836784	chr12:74836784:C:T	rs1605591	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	75178217	75178218	chr12:75178218:T:G	rs61932895	T	G	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	75184295	75184296	chr12:75184296:C:T	rs2471650	C	T	T	Sox1_MA0870.1	20	0	+	0	0	.
chr12	75270265	75270266	chr12:75270266:C:T	rs11180435	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr12	75457997	75457998	chr12:75457998:T:A	rs7307352	T	A	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr12	75722813	75722814	chr12:75722814:C:T	rs73371369	C	T	t	Sox1_MA0870.1	13	1	+	5.6274765416161365	7.80513183906713	AACATTTTCATTGCG
chr12	75722833	75722834	chr12:75722834:G:A	rs757518790	G	A	g	Sox1_MA0870.1	33	0	+	0	0	.
chr12	75817090	75817091	chr12:75817091:G:C	rs112316541	G	C	G	Sox1_MA0870.1	17	0	+	0	0	.
chr12	75817092	75817093	chr12:75817093:T:C	rs80144910	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr12	75844993	75844994	chr12:75844994:G:A	rs771792974	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr12	75845002	75845003	chr12:75845003:A:T	rs34133638	A	T	A	Sox1_MA0870.1	10	1	-	3.5145649827855787	-3.2941321013507547	AACAATAGCATGTTT
chr12	75914157	75914158	chr12:75914158:T:G	rs115796365	T	G	T	Sox1_MA0870.1	33	0	-	0	0	.
chr12	75994678	75994679	chr12:75994679:C:T	rs4831964	C	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr12	76137680	76137681	chr12:76137681:T:C	rs7295932	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr12	76276774	76276775	chr12:76276775:C:T	rs11829167	C	T	c	Sox1_MA0870.1	4	1	+	3.481607471400782	-1.3391578481441897	AACACGTTCAGTGTG
chr12	76302458	76302459	chr12:76302459:A:G	rs1473619	A	G	G	Sox1_MA0870.1	10	1	-	3.4658744669611106	-3.342822617175223	GGTAATAGCATTGTC
chr12	76343603	76343604	chr12:76343604:T:C	rs4761420	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr12	76346353	76346354	chr12:76346354:T:C	rs34737974	T	C	T	Sox1_MA0870.1	4	1	-	7.333868851916469	0.5562905977462798	AACAATTCCACTGCT
chr12	76346368	76346369	chr12:76346369:G:A	rs35676114	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	76629037	76629038	chr12:76629038:A:T	rs10778798	A	T	A	Sox1_MA0870.1	27	0	+	0	0	.
chr12	76666612	76666613	chr12:76666613:C:G	rs140216615	C	G	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	76679976	76679977	chr12:76679977:A:G	rs12831592	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr12	76939656	76939657	chr12:76939657:T:C	rs12822710	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr12	76984874	76984875	chr12:76984875:T:C	rs11609890	T	C	C	Sox1_MA0870.1	20	0	+	0	0	.
chr12	77171903	77171904	chr12:77171904:T:A	rs7955423	T	A	T	Sox1_MA0870.1	3	1	-	7.432260133939815	1.9179648278624812	CACACTAACAGTGAC
chr12	77171919	77171920	chr12:77171920:A:G	rs771621	A	G	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	77229936	77229937	chr12:77229937:A:C	rs12833896	A	C	A	Sox1_MA0870.1	23	0	-	0	0	.
chr12	77377714	77377715	chr12:77377715:G:A	rs4017759	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	77377727	77377728	chr12:77377728:T:C	rs79841552	T	C	T	Sox1_MA0870.1	11	1	+	10.809442681821107	5.854047696010775	AACAATTGCATTGGA
chr12	77585069	77585070	chr12:77585070:A:G	rs696447	A	G	A	Sox1_MA0870.1	9	1	+	5.620960560032151	-1.2877942192830703	GTCTATGCCATTGTT
chr12	77723196	77723197	chr12:77723197:A:G	rs1527793	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	77814958	77814959	chr12:77814959:C:A	rs7302948	C	A	C	Sox1_MA0870.1	4	1	+	6.362327748135002	8.319140682760219	ATCACTTACATTGGC
chr12	77957953	77957954	chr12:77957954:C:T	rs76828740	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr12	77957957	77957958	chr12:77957958:C:A	rs112817880	C	A	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	78183974	78183975	chr12:78183975:T:G	rs300516	T	G	g	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	78196483	78196484	chr12:78196484:T:C	rs74705494	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	78208418	78208419	chr12:78208419:C:T	rs7137676	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	78241655	78241656	chr12:78241656:G:A	rs77848659	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr12	79196937	79196938	chr12:79196938:G:A	rs80080674	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	79409888	79409889	chr12:79409889:G:T	rs1526961	G	T	T	Sox1_MA0870.1	27	0	+	0	0	.
chr12	79660131	79660132	chr12:79660132:T:A	rs536086111	T	A	t	Sox1_MA0870.1	27	0	+	0	0	.
chr12	79738929	79738930	chr12:79738930:C:T	rs2808355	C	T	T	Sox1_MA0870.1	0	1	-	4.756599784532196	6.098722927338949	GACAATTGCTTTGAT
chr12	79886133	79886134	chr12:79886134:T:C	rs182441395	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr12	80192263	80192264	chr12:80192264:G:C	rs1920404	G	C	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	80471300	80471301	chr12:80471301:T:C	rs73345980	T	C	T	Sox1_MA0870.1	11	1	+	10.462775834880043	5.50738084906971	AACAAAAACAGTGTT
chr12	80598302	80598303	chr12:80598303:A:T	rs12321476	A	T	T	Sox1_MA0870.1	16	0	+	0	0	.
chr12	80830393	80830394	chr12:80830394:A:G	rs12314666	A	G	G	Sox1_MA0870.1	14	1	+	7.168744347394614	7.344075584461658	ACCAATGACATTGAA
chr12	80913743	80913744	chr12:80913744:A:G	rs7957120	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr12	81121004	81121005	chr12:81121005:A:G	rs4354754	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	81702167	81702168	chr12:81702168:T:A	rs141137649	T	A	T	Sox1_MA0870.1	13	1	-	4.383432574214678	7.728958600803837	CACAGTGTCATTGAT
chr12	82596678	82596679	chr12:82596679:T:G	rs191068790	T	G	T	Sox1_MA0870.1	13	1	+	3.5145649827855787	-0.1279827438514941	AACAATAGCATACTT
chr12	82766410	82766411	chr12:82766411:G:T	rs11115386	G	T	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr12	82972744	82972745	chr12:82972745:G:A	rs142706697	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr12	83127682	83127683	chr12:83127683:T:A	rs59148775	T	A	T	Sox1_MA0870.1	9	1	-	11.026013534804209	4.117258755488988	CACAAAATCATTGTT
chr12	83150840	83150841	chr12:83150841:G:A	rs1914518	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr12	83579864	83579865	chr12:83579865:G:A	rs398380	G	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr12	83808277	83808278	chr12:83808278:A:T	rs2061529	A	T	A	Sox1_MA0870.1	24	0	+	0	0	.
chr12	84290198	84290199	chr12:84290199:T:C	rs986802	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr12	84502997	84502998	chr12:84502998:C:T	rs12812617	C	T	C	Sox1_MA0870.1	2	1	+	5.903716073926288	-1.0050387053889307	CTCAATAGCCTTGTT
chr12	84506456	84506457	chr12:84506457:A:C	rs74110616	A	C	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	84619258	84619259	chr12:84619259:T:C	rs147137842	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	84642398	84642399	chr12:84642399:C:T	rs1459618	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	84707233	84707234	chr12:84707234:A:G	rs10862920	A	G	G	Sox1_MA0870.1	11	1	-	6.11486361258038	1.1594686267700451	TACCATATCAGTGTA
chr12	85310860	85310861	chr12:85310861:C:T	rs7954427	C	T	C	Sox1_MA0870.1	0	1	+	6.553657896107268	5.851281138959788	CACTATAACAGTGCT
chr12	85401947	85401948	chr12:85401948:A:G	rs11116807	A	G	G	Sox1_MA0870.1	27	0	-	0	0	.
chr12	85621690	85621691	chr12:85621691:C:T	rs2199513	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	85755421	85755422	chr12:85755422:G:A	rs10779206	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr12	85755429	85755430	chr12:85755430:G:A	rs61930028	G	A	G	Sox1_MA0870.1	7	1	-	4.129087808037361	4.1172587554889875	CACAAAACCATTCTT
chr12	86081142	86081143	chr12:86081143:T:C	rs1502799	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr12	86097362	86097363	chr12:86097363:A:C	rs75526457	A	C	A	Sox1_MA0870.1	30	0	-	0	0	.
chr12	86199213	86199214	chr12:86199214:T:G	rs61948992	T	G	T	Sox1_MA0870.1	22	0	+	0	0	.
chr12	86880290	86880291	chr12:86880291:G:A	rs12231399	G	A	-	Sox1_MA0870.1	21	0	-	0	0	.
chr12	87124465	87124466	chr12:87124466:C:A	rs7964342	C	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	87333816	87333817	chr12:87333817:C:T	rs3990897	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr12	87338579	87338580	chr12:87338580:A:C	rs7303272	A	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	87678647	87678648	chr12:87678648:G:T	rs73199136	G	T	G	Sox1_MA0870.1	6	1	+	6.370712638041305	6.9362706154677225	AACTCTGTCATTGTA
chr12	87856436	87856437	chr12:87856437:G:A	rs12579007	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr12	88242560	88242561	chr12:88242561:A:T	rs149880728	A	T	A	Sox1_MA0870.1	29	0	-	0	0	.
chr12	88538468	88538469	chr12:88538469:C:T	rs11104938	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr12	89134167	89134168	chr12:89134168:C:T	rs71454146	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr12	89349445	89349446	chr12:89349446:A:G	rs704075	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	89612264	89612265	chr12:89612265:T:C	rs575773009	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr12	89646106	89646107	chr12:89646107:G:A	rs939329	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr12	89703889	89703890	chr12:89703890:G:C	rs10745511	G	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr12	89751173	89751174	chr12:89751174:A:G	rs11105400	A	G	A	Sox1_MA0870.1	9	1	+	6.863554744719722	-0.04520003459549793	TTCAATAGCATTGAA
chr12	89762796	89762797	chr12:89762797:A:T	rs7961386	A	T	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr12	89775630	89775631	chr12:89775631:T:C	rs10858928	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr12	89775647	89775648	chr12:89775648:G:T	rs142416476	G	T	G	Sox1_MA0870.1	2	1	-	5.435545741151026	-1.4732090381641938	CTCAATTTTATTGCT
chr12	89950917	89950918	chr12:89950918:A:G	rs7294671	A	G	A	Sox1_MA0870.1	10	1	-	5.896284305080016	-0.9124127790563176	GTCATTACCATTGTT
chr12	90243219	90243220	chr12:90243220:G:A	rs11615556	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr12	90243221	90243222	chr12:90243222:C:T	rs10506982	C	T	T	Sox1_MA0870.1	18	0	-	0	0	.
chr12	90841623	90841624	chr12:90841624:T:A	rs7311628	T	A	T	Sox1_MA0870.1	1	1	+	4.617365842456046	7.894650089617187	ATCAATTTCATGGTC
chr12	90983146	90983147	chr12:90983147:T:C	rs78072077	T	C	T	Sox1_MA0870.1	5	1	+	5.983401022314253	-0.9197637363335072	AACACTTACATTTTA
chr12	91039950	91039951	chr12:91039951:A:T	rs12829632	A	T	A	Sox1_MA0870.1	32	0	+	0	0	.
chr12	91103262	91103263	chr12:91103263:G:T	rs79752608	G	T	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr12	91377141	91377142	chr12:91377142:A:G	rs117807021	A	G	a	Sox1_MA0870.1	-6	0	+	0	0	.
chr12	91432277	91432278	chr12:91432278:T:G	chr12:91432278:T:G	T	G	T	Sox1_MA0870.1	25	0	-	0	0	.
chr12	91524735	91524736	chr12:91524736:C:G	rs989525	C	G	G	Sox1_MA0870.1	28	0	-	0	0	.
chr12	91561572	91561573	chr12:91561573:T:G	chr12:91561573:T:G	T	G	t	Sox1_MA0870.1	28	0	-	0	0	.
chr12	91567276	91567277	chr12:91567277:A:G	rs1107989	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	91662288	91662289	chr12:91662289:A:C	rs871451	A	C	A	Sox1_MA0870.1	34	0	-	0	0	.
chr12	91759931	91759932	chr12:91759932:A:G	rs118084507	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr12	91786491	91786492	chr12:91786492:A:G	rs117187935	A	G	A	Sox1_MA0870.1	10	1	-	4.147932085172122	-2.660764998964212	AACACTTGCATGGAT
chr12	91877063	91877064	chr12:91877064:C:T	rs77302674	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr12	91903127	91903128	chr12:91903128:G:C	rs4842795	G	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	91903144	91903145	chr12:91903145:C:T	rs55847141	C	T	C	Sox1_MA0870.1	7	1	+	9.411466454188576	9.399637401640202	AAGAATTCCATTGTT
chr12	91920353	91920354	chr12:91920354:T:C	rs73364952	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr12	91922725	91922726	chr12:91922726:T:C	rs17789925	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr12	91929814	91929815	chr12:91929815:T:C	rs12314254	T	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	92208034	92208035	chr12:92208035:G:A	rs7312577	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr12	92208041	92208042	chr12:92208042:A:C	rs12582672	A	C	A	Sox1_MA0870.1	1	1	+	4.770019167417352	1.0008787825728542	AAAAATTACATTGAG
chr12	92231423	92231424	chr12:92231424:A:G	rs73217638	A	G	G	Sox1_MA0870.1	1	1	+	7.505574848225647	3.407284192832507	TAAAATTGCATTGTT
chr12	92369258	92369259	chr12:92369259:T:C	rs450334	T	C	T	Sox1_MA0870.1	10	1	+	7.455318233369326	0.6466211492329917	CACAATAGCCTTGTG
chr12	92400090	92400091	chr12:92400091:G:A	rs10859312	G	A	G	Sox1_MA0870.1	13	1	-	6.523714194016484	8.701369491467478	AACAATTCAATTGCG
chr12	92446697	92446698	chr12:92446698:G:T	rs337666	G	T	T	Sox1_MA0870.1	0	1	-	3.6339225152705596	4.8702198638255405	CACTATACCCTTGTT
chr12	92562265	92562266	chr12:92562266:A:G	rs11833273	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr12	92562267	92562268	chr12:92562268:G:A	rs11838034	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr12	92655912	92655913	chr12:92655913:T:C	rs10859354	T	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr12	92898970	92898971	chr12:92898971:C:T	rs2251254	C	T	-	Sox1_MA0870.1	1	1	+	6.977947443973889	7.4698035816572474	ACCACAAACATTGTT
chr12	92953857	92953858	chr12:92953858:A:G	rs4418851	A	G	A	Sox1_MA0870.1	10	1	-	6.49461815024266	-0.3140789338936735	TACACCACCATTGTT
chr12	93089797	93089798	chr12:93089798:C:T	rs56067629	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr12	93107001	93107002	chr12:93107002:C:T	rs12818481	C	T	T	Sox1_MA0870.1	8	1	+	6.461063997925177	2.279454451287896	TACAATGACAGTGGA
chr12	93107784	93107785	chr12:93107785:T:C	rs115427709	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	93279553	93279554	chr12:93279554:A:G	rs12423479	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr12	93279759	93279760	chr12:93279760:G:C	rs6538404	G	C	G	Sox1_MA0870.1	12	1	+	6.615374785058377	-0.293379994256843	ACTAATACCATTGTT
chr12	93426356	93426357	chr12:93426357:C:A	rs2291266	C	A	C	Sox1_MA0870.1	20	0	-	0	0	.
chr12	93484591	93484592	chr12:93484592:T:C	rs117657534	T	C	t	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	93578493	93578494	chr12:93578494:T:G	chr12:93578494:T:G	T	G	T	Sox1_MA0870.1	33	0	-	0	0	.
chr12	93593129	93593130	chr12:93593130:G:A	rs3887022	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr12	93700204	93700205	chr12:93700205:C:T	rs1003537579	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr12	93786925	93786926	chr12:93786926:A:G	rs12302839	A	G	a	Sox1_MA0870.1	27	0	-	0	0	.
chr12	93946956	93946957	chr12:93946957:G:A	rs11107292	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr12	93974450	93974451	chr12:93974451:T:C	rs270877	T	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	94031806	94031807	chr12:94031807:A:T	rs11107337	A	T	A	Sox1_MA0870.1	11	1	-	5.18701776509225	-1.7157149217645817	AACACTAAGACTGTT
chr12	94173198	94173199	chr12:94173199:C:G	rs892467779	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	94195210	94195211	chr12:94195211:A:G	rs10745679	A	G	G	Sox1_MA0870.1	11	1	-	4.952198229978444	-0.0031967558318891642	CACACTGCCAGTGGG
chr12	94230736	94230737	chr12:94230737:T:C	rs12314236	T	C	T	Sox1_MA0870.1	3	1	-	4.560766907392729	-2.3398227598044965	CACAAAGACATTGGG
chr12	94489034	94489035	chr12:94489035:G:A	rs11107553	G	A	A	Sox1_MA0870.1	5	1	-	5.083321461776883	11.986486220424641	AACACCGACAGTGTT
chr12	94635450	94635451	chr12:94635451:C:T	rs6538523	C	T	T	Sox1_MA0870.1	3	1	+	8.45746681744994	8.028936436410781	TACCATAACAGTGTT
chr12	94706630	94706631	chr12:94706631:C:T	rs4761651	C	T	T	Sox1_MA0870.1	10	1	-	4.20836208935193	-0.35921006622084295	CACAATTCCCGTGTG
chr12	94706687	94706688	chr12:94706688:A:G	rs73228601	A	G	A	Sox1_MA0870.1	4	1	+	4.80099391194951	-1.9765843422206775	AACCATATCAGTGGC
chr12	94750226	94750227	chr12:94750227:A:G	rs11107687	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	95111275	95111276	chr12:95111276:C:T	rs11107900	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	95185229	95185230	chr12:95185230:T:C	rs146134521	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr12	95410915	95410916	chr12:95410916:A:G	rs12814561	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	95442969	95442970	chr12:95442970:G:T	rs2596752	G	T	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	95555918	95555919	chr12:95555919:T:A	rs7953557	T	A	T	Sox1_MA0870.1	22	0	+	0	0	.
chr12	95738116	95738117	chr12:95738117:A:G	rs17288108	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr12	95739608	95739609	chr12:95739609:A:G	rs10444524	A	G	G	Sox1_MA0870.1	7	1	+	5.141201072221988	4.74422274442548	AACACTGACATTTCT
chr12	95742679	95742680	chr12:95742680:A:G	rs4274262	A	G	G	Sox1_MA0870.1	3	1	+	6.748174693723307	-0.1524149734739192	CACACTTACACTGTT
chr12	95996373	95996374	chr12:95996374:T:C	rs7970524	T	C	C	Sox1_MA0870.1	26	0	-	0	0	.
chr12	96036082	96036083	chr12:96036083:C:T	rs996131371	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr12	96036104	96036105	chr12:96036105:T:C	rs11108383	T	C	T	Sox1_MA0870.1	1	1	-	3.9114376512286575	-0.18685300416448525	AACAATTACTGTGCC
chr12	96036105	96036106	chr12:96036106:T:A	rs112332456	T	A	T	Sox1_MA0870.1	0	1	-	3.9114376512286575	1.9727635455261963	AACAATTACTGTGCC
chr12	96046834	96046835	chr12:96046835:A:C	rs2660848	A	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr12	96054321	96054322	chr12:96054322:A:G	rs2540473	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr12	96172486	96172487	chr12:96172487:G:A	rs60628639	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr12	96214903	96214904	chr12:96214904:T:A	rs184217584	T	A	T	Sox1_MA0870.1	3	1	-	5.562740635441129	0.04844532936379187	GATACTATCATTGTC
chr12	96434288	96434289	chr12:96434289:C:T	rs78927432	C	T	-	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	96434333	96434334	chr12:96434334:C:T	rs73235140	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr12	96437147	96437148	chr12:96437148:A:G	rs78062193	A	G	A	Sox1_MA0870.1	5	1	-	4.068745494588317	-2.8344192640594423	GACACTGGCATTCTC
chr12	96517222	96517223	chr12:96517223:A:G	rs11108563	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr12	96766431	96766432	chr12:96766432:G:C	rs187864968	G	C	G	Sox1_MA0870.1	32	0	+	0	0	.
chr12	96766432	96766433	chr12:96766433:G:T	rs34477	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr12	96786489	96786490	chr12:96786490:G:C	rs34463	G	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	96786531	96786532	chr12:96786532:T:C	rs34462	T	C	C	Sox1_MA0870.1	23	0	+	0	0	.
chr12	96932165	96932166	chr12:96932166:G:A	rs11836610	G	A	G	Sox1_MA0870.1	7	1	+	8.239642372191414	8.636620699987922	AAAAATAGCATTGCT
chr12	97063759	97063760	chr12:97063760:A:T	rs57280713	A	T	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr12	97182737	97182738	chr12:97182738:A:G	rs759476	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	97285549	97285550	chr12:97285550:G:A	rs12831746	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr12	97475127	97475128	chr12:97475128:T:C	rs17331697	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr12	98085146	98085147	chr12:98085147:G:A	rs10860283	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr12	98110060	98110061	chr12:98110061:T:C	rs74487163	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	98194786	98194787	chr12:98194787:A:G	rs17456212	A	G	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	98225018	98225019	chr12:98225019:T:A	rs73376605	T	A	T	Sox1_MA0870.1	20	0	-	0	0	.
chr12	98401943	98401944	chr12:98401944:C:A	rs138720448	C	A	C	Sox1_MA0870.1	8	1	+	4.526814418906537	-1.3663552354116772	CACAATTTCATGGGT
chr12	98753266	98753267	chr12:98753267:C:G	rs73149022	C	G	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	98888623	98888624	chr12:98888624:T:C	rs543956507	T	C	T	Sox1_MA0870.1	3	1	-	5.483031958313905	-1.4175577088833204	AACAAGTGCAGTGTG
chr12	99121901	99121902	chr12:99121902:T:C	rs148210656	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr12	99515703	99515704	chr12:99515704:G:A	rs71462281	G	A	G	Sox1_MA0870.1	6	1	-	5.62812499354076	10.04427528065966	AGCAATCCCATTGCT
chr12	99789114	99789115	chr12:99789115:G:A	rs9971760	G	A	A	Sox1_MA0870.1	22	0	+	0	0	.
chr12	100225526	100225527	chr12:100225527:A:C	rs11110300	A	C	A	Sox1_MA0870.1	34	0	-	0	0	.
chr12	100225528	100225529	chr12:100225529:A:G	rs11110301	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr12	101075847	101075848	chr12:101075848:C:T	rs143387691	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr12	101116592	101116593	chr12:101116593:T:G	rs349661	T	G	G	Sox1_MA0870.1	11	1	+	7.316669267906745	0.4139365810499127	TACAATTGCAGTGAC
chr12	101171683	101171684	chr12:101171684:C:T	rs113186577	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr12	101299187	101299188	chr12:101299188:A:G	rs6538980	A	G	G	Sox1_MA0870.1	14	1	-	4.7620877085820785	3.251078304100674	CTCAATGACATTTTT
chr12	101745706	101745707	chr12:101745707:T:C	rs10219650	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr12	101907240	101907241	chr12:101907241:G:A	rs61936567	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	101941291	101941292	chr12:101941292:C:T	rs922057244	C	T	c	Sox1_MA0870.1	-12	0	+	0	0	.
chr12	102005575	102005576	chr12:102005576:T:C	rs4272832	T	C	C	Sox1_MA0870.1	14	1	-	6.13271637638204	6.308047613449084	TACAGTTACATTGTA
chr12	102364923	102364924	chr12:102364924:G:C	rs4764876	G	C	C	Sox1_MA0870.1	12	1	+	3.7302493629194706	-3.1785054163957502	AACACTGACACTGCC
chr12	102510627	102510628	chr12:102510628:C:A	rs855222	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	102692047	102692048	chr12:102692048:T:G	rs778019196	T	G	T	Sox1_MA0870.1	9	1	-	4.3818872799790345	-2.5268674993361864	AACCATGGCAGTGCA
chr12	102746564	102746565	chr12:102746565:A:G	rs11111363	A	G	A	Sox1_MA0870.1	7	1	+	8.203314634029802	7.806336306233293	CACAAAGACATTGTG
chr12	102746565	102746566	chr12:102746566:C:T	rs79747671	C	T	C	Sox1_MA0870.1	8	1	+	8.203314634029802	4.021705087392519	CACAAAGACATTGTG
chr12	102949240	102949241	chr12:102949241:C:A	rs568205125	C	A	C	Sox1_MA0870.1	1	1	+	7.49032164828154	11.25946203312604	CCCAATGACATTGCC
chr12	103269757	103269758	chr12:103269758:T:A	rs75524125	T	A	T	Sox1_MA0870.1	18	0	+	0	0	.
chr12	103392736	103392737	chr12:103392737:G:A	rs2374045	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr12	103678023	103678024	chr12:103678024:A:G	rs703647	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	103767705	103767706	chr12:103767706:T:C	rs79261387	T	C	-	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	103773406	103773407	chr12:103773407:C:T	rs751448	C	T	C	Sox1_MA0870.1	0	1	+	6.282517177339328	5.580140420191846	CGCACTAGCAGTGTC
chr12	103809376	103809377	chr12:103809377:T:C	rs141300575	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr12	104001347	104001348	chr12:104001348:C:T	rs148375413	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr12	104137027	104137028	chr12:104137028:C:A	rs7979713	C	A	A	Sox1_MA0870.1	30	0	-	0	0	.
chr12	104137027	104137028	chr12:104137028:C:T	chr12:104137028:C:T	C	T	A	Sox1_MA0870.1	30	0	-	0	0	.
chr12	104439181	104439182	chr12:104439182:A:C	rs57712028	A	C	A	Sox1_MA0870.1	1	1	-	8.038462602134938	7.2174561939029385	CTCACTTACAGTGTT
chr12	104516109	104516110	chr12:104516110:G:A	rs12425079	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr12	104521935	104521936	chr12:104521936:G:A	rs1416520003	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	104623192	104623193	chr12:104623193:G:A	rs7133318	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr12	104998895	104998896	chr12:104998896:A:G	rs151332291	A	G	A	Sox1_MA0870.1	11	1	-	7.914177666251529	2.9587826804411947	AACACTGCCAGTGGT
chr12	105053456	105053457	chr12:105053457:C:A	rs10861327	C	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr12	105053478	105053479	chr12:105053479:A:G	rs79158456	A	G	A	Sox1_MA0870.1	5	1	-	6.2618010748056765	-0.6413636838420823	CCCCATTGCATTGTT
chr12	105713847	105713848	chr12:105713848:A:G	rs10861487	A	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr12	105768337	105768338	chr12:105768338:C:T	rs11112724	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr12	105918954	105918955	chr12:105918955:T:C	rs7960880	T	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	105992981	105992982	chr12:105992982:C:G	rs2468210	C	G	C	Sox1_MA0870.1	20	0	+	0	0	.
chr12	106022504	106022505	chr12:106022505:G:A	rs17038009	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	106246064	106246065	chr12:106246065:T:G	chr12:106246065:T:G	T	G	T	Sox1_MA0870.1	4	1	-	6.814586251445696	4.857773316820478	CACTATGTCATTGCT
chr12	106268767	106268768	chr12:106268768:T:C	rs1148412	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr12	106290128	106290129	chr12:106290129:C:A	rs10861571	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	106822503	106822504	chr12:106822504:A:T	rs73200054	A	T	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	107283768	107283769	chr12:107283769:A:C	rs1861691	A	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr12	107442128	107442129	chr12:107442129:C:G	rs7316860	C	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr12	107457640	107457641	chr12:107457641:T:C	rs11113336	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	107520801	107520802	chr12:107520802:G:A	rs11113367	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	107520810	107520811	chr12:107520811:G:T	rs61938450	G	T	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	107629808	107629809	chr12:107629809:A:G	rs7976658	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	107779515	107779516	chr12:107779516:T:C	rs115141450	T	C	T	Sox1_MA0870.1	10	1	+	3.7935096853376056	-3.0151873987987283	GACAGTATCATTGGG
chr12	108067343	108067344	chr12:108067344:G:A	rs10746108	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr12	108304116	108304117	chr12:108304117:T:C	rs4964243	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr12	108355581	108355582	chr12:108355582:T:G	rs4529927	T	G	T	Sox1_MA0870.1	21	0	-	0	0	.
chr12	108392402	108392403	chr12:108392403:A:G	rs75510106	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr12	108456085	108456086	chr12:108456086:C:T	rs10861925	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr12	108456087	108456088	chr12:108456088:G:C	rs10861926	G	C	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	108527171	108527172	chr12:108527172:A:G	rs7134475	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr12	108622632	108622633	chr12:108622633:G:A	rs1005333468	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	108817254	108817255	chr12:108817255:T:C	rs12316621	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr12	109217348	109217349	chr12:109217349:T:G	rs2300453	T	G	T	Sox1_MA0870.1	30	0	-	0	0	.
chr12	109232978	109232979	chr12:109232979:A:G	rs78761086	A	G	a	Sox1_MA0870.1	34	0	+	0	0	.
chr12	109291921	109291922	chr12:109291922:C:T	rs974325382	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	109387682	109387683	chr12:109387683:C:T	rs78311696	C	T	T	Sox1_MA0870.1	9	1	+	3.654358697977055	3.654358697977055	CACACTAACCGTGTG
chr12	109618363	109618364	chr12:109618364:G:A	rs150285250	G	A	G	Sox1_MA0870.1	12	1	+	6.5349949558336355	-0.37375982348158454	AACACAATGATTGTT
chr12	109702583	109702584	chr12:109702584:T:C	rs1420746	T	C	T	Sox1_MA0870.1	15	0	+	0	0	.
chr12	110039820	110039821	chr12:110039821:C:T	rs11608607	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	110782003	110782004	chr12:110782004:C:A	rs11834902	C	A	C	Sox1_MA0870.1	29	0	-	0	0	.
chr12	110893332	110893333	chr12:110893333:C:T	rs74897448	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr12	110893351	110893352	chr12:110893352:T:A	rs11065751	T	A	T	Sox1_MA0870.1	9	1	-	13.04711341027329	6.138358630958071	CACAATGACATTGTA
chr12	110893360	110893361	chr12:110893361:G:A	rs11065752	G	A	A	Sox1_MA0870.1	0	1	-	13.04711341027329	12.34473665312581	CACAATGACATTGTA
chr12	111284451	111284452	chr12:111284452:C:T	rs60579505	C	T	C	Sox1_MA0870.1	4	1	+	3.481403886240829	-1.339361433304144	GACACGAGCATTGGT
chr12	111413460	111413461	chr12:111413461:T:A	rs12297345	T	A	T	Sox1_MA0870.1	19	0	+	0	0	.
chr12	111429275	111429276	chr12:111429276:C:T	rs976741529	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr12	111841821	111841822	chr12:111841822:A:G	rs928039700	A	G	A	Sox1_MA0870.1	1	1	+	3.504910952470722	-0.5933797029224187	GACCCTTTCAGTGCT
chr12	112086165	112086166	chr12:112086166:C:T	rs11066156	C	T	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr12	112525341	112525342	chr12:112525342:G:A	rs11615234	G	A	G	Sox1_MA0870.1	8	1	-	4.146941737465735	-0.034667809171547326	AGCAAGAGCATTGCT
chr12	112597926	112597927	chr12:112597927:T:C	chr12:112597927:T:C	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	112666081	112666082	chr12:112666082:G:A	rs184364245	G	A	G	Sox1_MA0870.1	7	1	+	4.689411615911666	5.086389943708175	GACACATGCATTGAT
chr12	112825712	112825713	chr12:112825713:A:C	rs7139170	A	C	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr12	113215215	113215216	chr12:113215216:T:G	chr12:113215216:T:G	T	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	113322279	113322280	chr12:113322280:C:T	rs143209943	C	T	C	Sox1_MA0870.1	6	1	-	4.577139637304059	6.115746330444777	CACACGGACATTGTC
chr12	113782051	113782052	chr12:113782052:A:G	rs10850202	A	G	A	Sox1_MA0870.1	13	1	-	6.370712638041305	4.193057340590311	AACTCTGTCATTGTA
chr12	113831180	113831181	chr12:113831181:C:T	rs116590798	C	T	C	Sox1_MA0870.1	2	1	+	7.058181583043963	0.1494268037287444	TTCAAAACCATTGTT
chr12	113917267	113917268	chr12:113917268:T:C	rs4767163	T	C	C	Sox1_MA0870.1	33	0	-	0	0	.
chr12	114089989	114089990	chr12:114089990:G:A	rs73192969	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr12	114193749	114193750	chr12:114193750:G:A	rs56328470	G	A	A	Sox1_MA0870.1	4	1	-	3.8268319384373357	-0.9939333811076364	GACACAGGCATTGGT
chr12	114862200	114862201	chr12:114862201:G:A	rs2114667	G	A	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	114950162	114950163	chr12:114950163:T:C	rs10850412	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr12	114981264	114981265	chr12:114981265:A:G	rs2384503	A	G	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	114981690	114981691	chr12:114981691:T:C	rs7975876	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr12	115024166	115024167	chr12:115024167:A:G	rs960328625	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	115155611	115155612	chr12:115155612:A:G	rs40426	A	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr12	115205928	115205929	chr12:115205929:G:T	rs6490011	G	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr12	115306575	115306576	chr12:115306576:C:T	rs1618875	C	T	C	Sox1_MA0870.1	8	1	+	4.3479800470302115	0.166370500392929	CACAATCCCAGTGCA
chr12	115554948	115554949	chr12:115554949:T:G	rs1976344	T	G	G	Sox1_MA0870.1	13	1	+	5.298750244864701	1.6562025182276288	AAACATACCATTGTT
chr12	115599325	115599326	chr12:115599326:G:C	rs1226509484	G	C	G	Sox1_MA0870.1	22	0	-	0	0	.
chr12	115749854	115749855	chr12:115749855:G:A	rs2460488	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	115753612	115753613	chr12:115753613:A:G	rs1401979	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr12	115956818	115956819	chr12:115956819:T:G	rs78610738	T	G	T	Sox1_MA0870.1	4	1	-	3.7266801078995377	1.7698671732743203	TACAATTCCAGGGTC
chr12	116297174	116297175	chr12:116297175:C:T	rs16946547	C	T	T	Sox1_MA0870.1	10	1	-	7.336147431274279	2.7685752757015063	CCCAATTTCAGTGTG
chr12	116550072	116550073	chr12:116550073:G:A	rs79408039	G	A	G	Sox1_MA0870.1	2	1	-	5.428469148168451	-1.4802856311467711	AACAATTACAGGGCT
chr12	116599643	116599644	chr12:116599644:A:C	rs560406386	A	C	A	Sox1_MA0870.1	32	0	-	0	0	.
chr12	116624977	116624978	chr12:116624978:A:G	rs10774877	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr12	116970409	116970410	chr12:116970410:G:A	rs7954824	G	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr12	117019823	117019824	chr12:117019824:T:A	rs183437133	T	A	T	Sox1_MA0870.1	23	0	-	0	0	.
chr12	117083374	117083375	chr12:117083375:A:G	rs10744890	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	117119279	117119280	chr12:117119280:A:G	rs147448560	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr12	117320102	117320103	chr12:117320103:G:A	rs4766843	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	117582368	117582369	chr12:117582369:G:A	rs182412626	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	117679940	117679941	chr12:117679941:T:C	rs7294385	T	C	T	Sox1_MA0870.1	5	1	+	6.840071690730484	-0.06309306791727531	GACAATAGCAGGGTT
chr12	117861059	117861060	chr12:117861060:C:T	rs61228256	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr12	117904328	117904329	chr12:117904329:A:G	rs12299038	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr12	117980839	117980840	chr12:117980840:T:C	rs77476628	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr12	117980885	117980886	chr12:117980886:G:A	rs2393372	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr12	118137225	118137226	chr12:118137226:T:C	rs116807243	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr12	118151529	118151530	chr12:118151530:A:C	rs61943524	A	C	A	Sox1_MA0870.1	3	1	+	9.620521304069907	4.534756379031732	CACAATTGGATTGTG
chr12	118188910	118188911	chr12:118188911:T:G	rs567674863	T	G	T	Sox1_MA0870.1	17	0	-	0	0	.
chr12	118908819	118908820	chr12:118908820:C:G	rs953784	C	G	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr12	119084514	119084515	chr12:119084515:C:T	rs10774485	C	T	c	Sox1_MA0870.1	10	1	-	6.668908112979678	2.1013359574069046	CTCACTATCAGTGTA
chr12	119180085	119180086	chr12:119180086:A:G	rs73412044	A	G	A	Sox1_MA0870.1	7	1	-	15.324627962044506	15.336457014592881	AACACTATCATTGTT
chr12	119247375	119247376	chr12:119247376:A:G	rs142135686	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr12	119293051	119293052	chr12:119293052:G:A	rs2727690	G	A	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	119625019	119625020	chr12:119625020:A:G	rs10744742	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	120195904	120195905	chr12:120195905:G:C	chr12:120195905:G:C	G	C	G	Sox1_MA0870.1	24	0	+	0	0	.
chr12	120231366	120231367	chr12:120231367:A:T	rs73415014	A	T	A	Sox1_MA0870.1	9	1	+	5.38757092748202	-1.521183851833201	ATCAATACCATAGTG
chr12	120291945	120291946	chr12:120291946:T:C	rs914911617	T	C	T	Sox1_MA0870.1	0	1	+	4.654334915991939	5.356711673139419	TACCATTACATTGAG
chr12	120291952	120291953	chr12:120291953:A:T	rs7311566	A	T	A	Sox1_MA0870.1	7	1	+	4.654334915991939	4.212745035907524	TACCATTACATTGAG
chr12	120291953	120291954	chr12:120291954:C:T	rs142705282	C	T	C	Sox1_MA0870.1	8	1	+	4.654334915991939	0.47272536935465614	TACCATTACATTGAG
chr12	120602899	120602900	chr12:120602900:T:A	rs7304812	T	A	T	Sox1_MA0870.1	9	1	-	4.285563981928951	-2.6231907973862696	AACACTACCAGTATA
chr12	120745366	120745367	chr12:120745367:C:T	rs73227016	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr12	120889457	120889458	chr12:120889458:T:C	rs10849811	T	C	T	Sox1_MA0870.1	3	1	-	3.475142896130967	-3.425446771066258	CACACTGCCATTTCT
chr12	120976631	120976632	chr12:120976632:C:A	rs73228108	C	A	C	Sox1_MA0870.1	2	1	+	4.175007571384217	-2.7337472079310046	TACCATTGCATTGGC
chr12	121024335	121024336	chr12:121024336:G:C	rs2259883	G	C	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr12	121053851	121053852	chr12:121053852:A:C	rs1796404	A	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr12	121215121	121215122	chr12:121215122:T:G	rs565443635	T	G	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr12	121239510	121239511	chr12:121239511:G:C	rs11065502	G	C	G	Sox1_MA0870.1	9	1	-	4.20974883452876	4.20974883452876	CACAATAACCTTGGG
chr12	121239862	121239863	chr12:121239863:C:T	rs142749471	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr12	121456461	121456462	chr12:121456462:T:C	rs116013198	T	C	T	Sox1_MA0870.1	6	1	-	3.440359294335806	1.9017526011950867	GCCCATAGCATTGCC
chr12	121713658	121713659	chr12:121713659:C:T	rs143958465	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr12	121760610	121760611	chr12:121760611:G:A	rs57318156	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr12	121921501	121921502	chr12:121921502:G:A	rs12824001	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr12	121921505	121921506	chr12:121921506:G:A	rs12824010	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr12	122010905	122010906	chr12:122010906:G:A	rs73217755	G	A	G	Sox1_MA0870.1	8	1	-	6.008286060288601	1.8266765136513188	TACACTGGCAGTGGT
chr12	122139047	122139048	chr12:122139048:A:G	rs9668430	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr12	122639753	122639754	chr12:122639754:C:G	rs7307233	C	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr12	122875603	122875604	chr12:122875604:G:A	rs6489245	G	A	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr12	123472201	123472202	chr12:123472202:A:G	rs3087496	A	G	A	Sox1_MA0870.1	7	1	-	8.035709136942259	8.047538189490632	GCCACTATCATTGCT
chr12	123655049	123655050	chr12:123655050:A:G	rs4930737	A	G	A	Sox1_MA0870.1	4	1	+	4.780230011672308	-1.9973482424978788	GTCAATTTCATTTTT
chr12	123735243	123735244	chr12:123735244:C:T	rs10773030	C	T	T	Sox1_MA0870.1	8	1	+	4.2758215915661815	0.09421204492889979	CCCAAGGACATTGTT
chr12	124091011	124091012	chr12:124091012:T:A	rs825481	T	A	T	Sox1_MA0870.1	9	1	-	7.466681073747823	0.5579262944326023	AACAATTTGATTGAG
chr12	124171747	124171748	chr12:124171748:G:A	rs76907596	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr12	124237079	124237080	chr12:124237080:T:C	rs924425	T	C	T	Sox1_MA0870.1	6	1	-	8.434452505419955	6.895845812279236	TACAAAACCATTGTA
chr12	124308460	124308461	chr12:124308461:C:G	rs34533686	C	G	C	Sox1_MA0870.1	8	1	+	4.141788789100557	0.3712857962002185	CACACTGCCCTTGTC
chr12	124361745	124361746	chr12:124361746:T:A	rs577792769	T	A	T	Sox1_MA0870.1	34	0	-	0	0	.
chr12	124449197	124449198	chr12:124449198:C:T	rs883822	C	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr12	124519036	124519037	chr12:124519037:G:C	rs78404451	G	C	G	Sox1_MA0870.1	14	1	+	3.9598986056033905	4.17457128884009	CACACTGGCATTCTG
chr12	124519735	124519736	chr12:124519736:C:A	rs11057651	C	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr12	124603661	124603662	chr12:124603662:C:G	rs7315502	C	G	c	Sox1_MA0870.1	16	0	-	0	0	.
chr12	124645625	124645626	chr12:124645626:C:T	rs74730477	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr12	124656103	124656104	chr12:124656104:G:A	rs538925785	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr12	124829549	124829550	chr12:124829550:C:T	rs79633711	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr12	124981390	124981391	chr12:124981391:T:C	rs12423062	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr12	124981398	124981399	chr12:124981399:T:C	rs12423063	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr12	125070915	125070916	chr12:125070916:G:A	rs879993	G	A	A	Sox1_MA0870.1	24	0	-	0	0	.
chr12	125070922	125070923	chr12:125070923:G:A	rs34094159	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr12	125298269	125298270	chr12:125298270:C:T	rs12824974	C	T	c	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	125654978	125654979	chr12:125654979:G:A	rs2240496	G	A	g	Sox1_MA0870.1	-14	0	+	0	0	.
chr12	126389633	126389634	chr12:126389634:A:C	rs7962731	A	C	C	Sox1_MA0870.1	7	1	-	5.141649239204206	5.186260791492112	CACTATCTCATTGTT
chr12	126419752	126419753	chr12:126419753:T:A	rs17500894	T	A	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	126883887	126883888	chr12:126883888:C:T	rs77319609	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr12	127062396	127062397	chr12:127062397:G:A	rs10773362	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr12	127126506	127126507	chr12:127126507:T:C	rs2251652	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr12	127159741	127159742	chr12:127159742:T:C	rs11059004	T	C	T	Sox1_MA0870.1	14	1	+	8.857463062813702	7.3464536583322975	AACACTAACATTTTT
chr12	127366386	127366387	chr12:127366387:G:A	rs76014981	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr12	127484868	127484869	chr12:127484869:G:A	rs11534801	G	A	A	Sox1_MA0870.1	23	0	-	0	0	.
chr12	127484893	127484894	chr12:127484894:A:G	rs12829564	A	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr12	127489307	127489308	chr12:127489308:C:T	rs117270399	C	T	C	Sox1_MA0870.1	13	1	+	4.0734833732969165	6.2511386707479115	CATACTTGCATTGCT
chr12	127489325	127489326	chr12:127489326:A:G	rs6489178	A	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr12	127606381	127606382	chr12:127606382:T:G	rs7955165	T	G	T	Sox1_MA0870.1	30	0	-	0	0	.
chr12	127613107	127613108	chr12:127613108:A:T	rs12828667	A	T	a	Sox1_MA0870.1	18	0	-	0	0	.
chr12	127613115	127613116	chr12:127613116:A:G	rs4760946	A	G	a	Sox1_MA0870.1	10	1	-	6.7684434541554666	-0.04025362998086679	AACACTGAGATTGCC
chr12	127648657	127648658	chr12:127648658:G:A	rs2242454	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	127667678	127667679	chr12:127667679:A:C	rs4761001	A	C	C	Sox1_MA0870.1	11	1	-	5.246311090739331	-1.6564215961175006	AAGACTTGCAGTGTT
chr12	127971762	127971763	chr12:127971763:C:T	rs1480727642	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr12	128154435	128154436	chr12:128154436:A:C	rs1399503	A	C	C	Sox1_MA0870.1	7	1	+	4.445099896285063	4.015339068749022	AACAATTAGACTGTG
chr12	128245499	128245500	chr12:128245500:T:C	rs10773511	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr12	128245525	128245526	chr12:128245526:C:T	rs4533103	C	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr12	128339967	128339968	chr12:128339968:T:C	rs1621093	T	C	T	Sox1_MA0870.1	9	1	-	6.229899452483982	-0.6788553268312391	AACAGTTGCATTGAT
chr12	128449704	128449705	chr12:128449705:G:A	rs11059698	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	128491419	128491420	chr12:128491420:A:G	rs76303487	A	G	A	Sox1_MA0870.1	11	1	-	7.04451811813773	2.0891231323273955	CCCACTGACATTGCT
chr12	128702883	128702884	chr12:128702884:G:T	rs7302992	G	T	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	128813105	128813106	chr12:128813106:C:T	rs4760533	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr12	128822359	128822360	chr12:128822360:C:T	rs75663927	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr12	128974342	128974343	chr12:128974343:T:C	rs76571605	T	C	t	Sox1_MA0870.1	9	1	-	4.077078849339263	-2.831675929975957	CTCAAAGGCATTGCT
chr12	129080629	129080630	chr12:129080630:C:A	rs77784796	C	A	C	Sox1_MA0870.1	2	1	+	6.906065601385276	-0.0026891779299457186	GACAATCGCATTGCC
chr12	129108137	129108138	chr12:129108138:A:G	rs59851682	A	G	A	Sox1_MA0870.1	9	1	+	4.822631209032933	-2.086123570282289	GACACTTACATGGTG
chr12	129466130	129466131	chr12:129466131:T:G	rs11060361	T	G	T	Sox1_MA0870.1	15	0	-	0	0	.
chr12	129481929	129481930	chr12:129481930:G:A	rs11060372	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr12	129657944	129657945	chr12:129657945:G:T	rs616903	G	T	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr12	129710832	129710833	chr12:129710833:G:A	rs61275798	G	A	G	Sox1_MA0870.1	4	1	-	7.920105686125959	3.099340366580988	CACACTGACATTGAG
chr12	129862801	129862802	chr12:129862802:C:T	rs35831266	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr12	129985450	129985451	chr12:129985451:G:C	rs697799	G	C	G	Sox1_MA0870.1	17	0	-	0	0	.
chr12	130044817	130044818	chr12:130044818:T:A	rs12579624	T	A	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr12	130065987	130065988	chr12:130065988:G:A	rs12830955	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr12	130083922	130083923	chr12:130083923:A:G	rs76544257	A	G	a	Sox1_MA0870.1	7	1	-	4.702532407724855	4.714361460273229	ACCAATATCATTTTA
chr12	130087471	130087472	chr12:130087472:A:G	rs1014162386	A	G	a	Sox1_MA0870.1	16	0	-	0	0	.
chr12	130087500	130087501	chr12:130087501:T:C	rs77679744	T	C	t	Sox1_MA0870.1	-13	0	-	0	0	.
chr12	130097425	130097426	chr12:130097426:C:T	rs2398498	C	T	c	Sox1_MA0870.1	-5	0	+	0	0	.
chr12	130220097	130220098	chr12:130220098:T:A	rs11614173	T	A	T	Sox1_MA0870.1	32	0	-	0	0	.
chr12	130521848	130521849	chr12:130521849:T:C	rs11614698	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr12	130668200	130668201	chr12:130668201:T:A	rs60876022	T	A	T	Sox1_MA0870.1	6	1	+	10.045498270381087	11.018546986095387	CACAATTGCATTGAG
chr12	130675841	130675842	chr12:130675842:C:T	rs80316006	C	T	C	Sox1_MA0870.1	14	1	-	3.215095374239325	3.039764137172281	GACCATGGCAGTGCG
chr12	130742483	130742484	chr12:130742484:G:A	rs73162816	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr12	130791902	130791903	chr12:130791903:G:T	rs4759786	G	T	T	Sox1_MA0870.1	15	0	-	0	0	.
chr12	131031650	131031651	chr12:131031651:C:A	rs7965692	C	A	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr12	131089345	131089346	chr12:131089346:C:A	rs10848279	C	A	C	Sox1_MA0870.1	24	0	+	0	0	.
chr12	131188706	131188707	chr12:131188707:G:A	rs4430590	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr12	131293888	131293889	chr12:131293889:A:G	rs374516675	A	G	-	Sox1_MA0870.1	23	0	-	0	0	.
chr12	131362593	131362594	chr12:131362594:G:A	rs12314372	G	A	g	Sox1_MA0870.1	15	0	+	0	0	.
chr12	131362609	131362610	chr12:131362610:A:G	rs7138777	A	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr12	131429908	131429909	chr12:131429909:A:C	rs11061526	A	C	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr12	131459584	131459585	chr12:131459585:G:T	rs7138582	G	T	g	Sox1_MA0870.1	8	1	-	5.866457733364669	-0.026711920953544355	TACATTTTCATTGTG
chr12	131497740	131497741	chr12:131497741:T:C	rs7297647	T	C	T	Sox1_MA0870.1	13	1	+	4.8660779011948785	2.6884226037438848	GGCCATACCATTGTA
chr12	131583730	131583731	chr12:131583731:A:G	rs11246874	A	G	A	Sox1_MA0870.1	11	1	-	10.72717034861589	5.771775362805556	TACAATTTCATTGGT
chr12	131640947	131640948	chr12:131640948:C:A	rs74923546	C	A	C	Sox1_MA0870.1	12	1	-	4.612183376332965	-2.2965714029822557	GCCCATTCCATTGTC
chr12	131640958	131640959	chr12:131640959:G:A	rs10794473	G	A	G	Sox1_MA0870.1	1	1	-	4.612183376332965	5.104039514016323	GCCCATTCCATTGTC
chr12	131867582	131867583	chr12:131867583:T:C	rs11246859	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr12	131867590	131867591	chr12:131867591:C:A	rs10902464	C	A	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr12	132167927	132167928	chr12:132167928:C:T	rs76473616	C	T	-	Sox1_MA0870.1	31	0	-	0	0	.
chr12	132193213	132193214	chr12:132193214:C:T	rs67670550	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr12	132300935	132300936	chr12:132300936:T:C	rs28569099	T	C	T	Sox1_MA0870.1	9	1	-	4.394175367916494	-2.514579411398727	CACCATGGCATTGAG
chr12	132590916	132590917	chr12:132590917:G:C	rs7973865	G	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr12	132658990	132658991	chr12:132658991:A:C	rs12814504	A	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr12	132765794	132765795	chr12:132765795:C:T	rs9988972	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr12	132813053	132813054	chr12:132813054:T:C	rs75853986	T	C	T	Sox1_MA0870.1	10	1	+	7.033747053813957	0.2250499696776238	ACCAAAAACATTGTA
chr12	132825800	132825801	chr12:132825801:T:C	rs879211422	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr12	132899178	132899179	chr12:132899179:G:A	rs11147152	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr12	132900560	132900561	chr12:132900561:A:G	rs4758915	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr12	132904904	132904905	chr12:132904905:G:A	chr12:132904905:G:A	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr12	132905913	132905914	chr12:132905914:T:A	rs75563723	T	A	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr13	16237790	16237791	chr13:16237791:A:C	rs1026929836	A	C	.	Sox1_MA0870.1	-17	0	-	0	0	.
chr13	17521408	17521409	chr13:17521409:G:A	rs1368207352	G	A	.	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	17780728	17780729	chr13:17780729:A:G	chr13:17780729:A:G	A	G	.	Sox1_MA0870.1	27	0	-	0	0	.
chr13	17879679	17879680	chr13:17879680:G:A	rs1210195506	G	A	.	Sox1_MA0870.1	-14	0	-	0	0	.
chr13	18870687	18870688	chr13:18870688:C:T	rs1838126	C	T	.	Sox1_MA0870.1	31	0	+	0	0	.
chr13	19076992	19076993	chr13:19076993:G:A	rs7986712	G	A	A	Sox1_MA0870.1	22	0	+	0	0	.
chr13	19178519	19178520	chr13:19178520:T:G	rs36215410	T	G	T	Sox1_MA0870.1	16	0	-	0	0	.
chr13	19240620	19240621	chr13:19240621:A:G	rs7322424	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr13	20115158	20115159	chr13:20115159:T:C	rs12862093	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr13	20159732	20159733	chr13:20159733:T:C	rs117630608	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	20470497	20470498	chr13:20470498:G:A	rs7983250	G	A	A	Sox1_MA0870.1	5	1	+	4.3194624972694875	6.203497242606714	AACCAGTTCATTGTT
chr13	20551825	20551826	chr13:20551826:A:C	rs746111318	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr13	20825163	20825164	chr13:20825164:T:C	rs190611444	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr13	20833046	20833047	chr13:20833047:G:A	rs9509389	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr13	20843954	20843955	chr13:20843955:T:G	rs716480	T	G	T	Sox1_MA0870.1	0	1	-	6.087334368558488	4.851037020003507	AACAAATGCATTGAA
chr13	20892729	20892730	chr13:20892730:G:A	rs6490624	G	A	A	Sox1_MA0870.1	12	1	+	8.864213332955995	1.9554585536407747	TACAAAAACATTGTA
chr13	21038651	21038652	chr13:21038652:G:A	rs4770094	G	A	G	Sox1_MA0870.1	8	1	-	4.0214358200467775	-0.16017372659050388	CACAGTGGCAGTGTC
chr13	21044045	21044046	chr13:21044046:A:G	rs9509500	A	G	G	Sox1_MA0870.1	6	1	+	4.396523946681082	2.857917253540364	CACAATAAGAATGTC
chr13	21123145	21123146	chr13:21123146:A:G	rs113185578	A	G	g	Sox1_MA0870.1	-2	0	-	0	0	.
chr13	21216637	21216638	chr13:21216638:G:C	rs7317001	G	C	.	Sox1_MA0870.1	7	1	-	5.722801752256176	5.7555842519957086	AACAATTCCATTACC
chr13	21232858	21232859	chr13:21232859:T:C	rs9509610	T	C	t	Sox1_MA0870.1	9	1	-	7.843530657344635	0.9347758780294138	AACAAAATCAGTGCT
chr13	21333110	21333111	chr13:21333111:A:G	rs4085568	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr13	21333113	21333114	chr13:21333114:A:T	rs261726	A	T	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr13	21704221	21704222	chr13:21704222:G:T	rs758942316	G	T	G	Sox1_MA0870.1	14	1	+	5.861811626763675	7.587493714481779	AACACTTGCACTGTG
chr13	22111535	22111536	chr13:22111536:A:T	rs115926653	A	T	A	Sox1_MA0870.1	9	1	+	5.265169169563992	-1.6435856097512294	AACACTTTCATTTCT
chr13	22451319	22451320	chr13:22451320:G:C	rs292470	G	C	G	Sox1_MA0870.1	12	1	+	4.553080536500517	-2.3556742428147026	GACAAAAACACTGTT
chr13	22538584	22538585	chr13:22538585:A:T	rs4238158	A	T	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr13	22642334	22642335	chr13:22642335:G:T	rs17077287	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr13	23321458	23321459	chr13:23321459:T:C	rs521600	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr13	23326111	23326112	chr13:23326112:T:C	rs4769263	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr13	23482352	23482353	chr13:23482353:G:A	rs7982530	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr13	23509950	23509951	chr13:23509951:G:A	rs117236052	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr13	23628887	23628888	chr13:23628888:C:T	rs6490812	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr13	23643934	23643935	chr13:23643935:G:C	rs75784613	G	C	G	Sox1_MA0870.1	4	1	-	6.017228400114803	1.1964630805698322	CCCACTTAGATTGTT
chr13	23795331	23795332	chr13:23795332:A:G	rs717776	A	G	A	Sox1_MA0870.1	8	1	-	6.038233096610616	10.219842643247897	AACAAATATATTGTC
chr13	23845358	23845359	chr13:23845359:T:C	rs148914675	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr13	23964233	23964234	chr13:23964234:T:C	rs1570888	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	24045107	24045108	chr13:24045108:T:A	rs7997167	T	A	T	Sox1_MA0870.1	26	0	+	0	0	.
chr13	24059697	24059698	chr13:24059698:T:C	rs9511025	T	C	T	Sox1_MA0870.1	4	1	-	6.356829761375064	-0.4207484927951243	TACAAAATCAGTGTG
chr13	24068609	24068610	chr13:24068610:C:T	rs7320360	C	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr13	24078031	24078032	chr13:24078032:G:A	rs9553161	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr13	24167728	24167729	chr13:24167729:G:T	rs1220582	G	T	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr13	24186768	24186769	chr13:24186769:G:A	rs2760359	G	A	A	Sox1_MA0870.1	8	1	-	5.903716073926288	1.7221065272890064	CTCAATAGCGTTGTT
chr13	24211930	24211931	chr13:24211931:A:G	rs7327979	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	24219323	24219324	chr13:24219324:C:A	rs150481845	C	A	C	Sox1_MA0870.1	20	0	+	0	0	.
chr13	24234692	24234693	chr13:24234693:G:A	rs12584863	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr13	24270614	24270615	chr13:24270615:C:T	rs79711232	C	T	T	Sox1_MA0870.1	30	0	-	0	0	.
chr13	24348346	24348347	chr13:24348347:T:A	rs2862237	T	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr13	24512257	24512258	chr13:24512258:T:C	rs77522320	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr13	24679061	24679062	chr13:24679062:G:A	rs61948064	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr13	25180557	25180558	chr13:25180558:C:T	rs878205	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr13	25200665	25200666	chr13:25200666:G:A	rs9507476	G	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr13	25215333	25215334	chr13:25215334:G:A	rs9511703	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	25718166	25718167	chr13:25718167:G:A	rs3132353	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr13	25753285	25753286	chr13:25753286:T:G	rs142880862	T	G	T	Sox1_MA0870.1	33	0	+	0	0	.
chr13	26221555	26221556	chr13:26221556:T:G	chr13:26221556:T:G	T	G	t	Sox1_MA0870.1	1	1	-	5.264707576094522	1.4955671912500241	AACAGTGACAGTGTA
chr13	26221567	26221568	chr13:26221568:C:T	rs149568510	C	T	c	Sox1_MA0870.1	-11	0	-	0	0	.
chr13	26459402	26459403	chr13:26459403:T:C	rs8002036	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr13	26460824	26460825	chr13:26460825:C:T	rs9507718	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr13	26460843	26460844	chr13:26460844:G:A	rs139055069	G	A	G	Sox1_MA0870.1	6	1	+	3.3969855577364907	4.9355922508772085	GACCATGCCAGTGCC
chr13	26469759	26469760	chr13:26469760:T:C	rs4427654	T	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr13	26708464	26708465	chr13:26708465:T:A	rs4771005	T	A	A	Sox1_MA0870.1	14	1	+	4.761452219739957	2.8604388949548096	TTCACTTGCAGTGCT
chr13	26796003	26796004	chr13:26796004:A:G	rs2182881	A	G	G	Sox1_MA0870.1	28	0	-	0	0	.
chr13	26818129	26818130	chr13:26818130:A:G	rs9581749	A	G	A	Sox1_MA0870.1	9	1	+	3.800879863401462	-3.107874915913757	CCCACAACCATTGTC
chr13	26881339	26881340	chr13:26881340:G:A	rs9579049	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr13	26942310	26942311	chr13:26942311:G:A	rs9551343	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr13	27335108	27335109	chr13:27335109:C:G	rs1537437	C	G	C	Sox1_MA0870.1	14	1	-	5.54091156875901	5.7555842519957086	AACAATTGCATTCCG
chr13	27403539	27403540	chr13:27403540:C:T	rs554320365	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	27406569	27406570	chr13:27406570:G:C	rs3848004	G	C	C	Sox1_MA0870.1	0	1	-	5.465143140082958	5.359317345831187	CACAACACCATTGCC
chr13	27622260	27622261	chr13:27622261:G:A	rs114366700	G	A	G	Sox1_MA0870.1	10	1	+	4.517406568325745	-0.050165587247027355	TACAACAGCAGTGTG
chr13	27624276	27624277	chr13:27624277:G:A	rs880214	G	A	G	Sox1_MA0870.1	1	1	-	4.753166052471152	5.24502219015451	ACCAATAGCATAGTA
chr13	27660931	27660932	chr13:27660932:C:T	rs542610	C	T	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr13	27826547	27826548	chr13:27826548:T:C	rs74043609	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr13	27826551	27826552	chr13:27826552:G:A	rs761231199	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr13	28098534	28098535	chr13:28098535:G:A	rs7321212	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr13	28564118	28564119	chr13:28564119:T:C	rs7320190	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr13	28616780	28616781	chr13:28616781:C:T	rs7336988	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr13	28624602	28624603	chr13:28624603:T:C	rs73160076	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr13	28751776	28751777	chr13:28751777:C:T	rs12184834	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr13	28751794	28751795	chr13:28751795:C:T	rs12184835	C	T	C	Sox1_MA0870.1	7	1	+	4.623611801081566	4.611782748533194	GACAATACCAGTACT
chr13	29096254	29096255	chr13:29096255:G:C	rs1887751	G	C	C	Sox1_MA0870.1	8	1	+	3.950720416537269	7.721223409437606	CACACTAAGAATGTT
chr13	29134031	29134032	chr13:29134032:A:G	rs9506111	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr13	29225395	29225396	chr13:29225396:C:T	rs1335651	C	T	-	Sox1_MA0870.1	14	1	-	5.072322201746246	4.896990964679202	TACAATAACACTGCG
chr13	29684747	29684748	chr13:29684748:T:C	rs1023163	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr13	29698507	29698508	chr13:29698508:T:C	rs67704126	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr13	29741266	29741267	chr13:29741267:A:C	rs912394	A	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr13	29793821	29793822	chr13:29793822:A:C	rs9506229	A	C	C	Sox1_MA0870.1	1	1	+	5.265169169563992	1.4960287847194924	AACACTTTCATTTCT
chr13	29852626	29852627	chr13:29852627:T:G	rs80171055	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	29862094	29862095	chr13:29862095:T:C	rs141338098	T	C	T	Sox1_MA0870.1	10	1	+	9.12997583089819	2.3212787467618554	CTCACTAGCATTGTG
chr13	29894245	29894246	chr13:29894246:A:G	rs2388238	A	G	G	Sox1_MA0870.1	11	1	-	3.1187720761892415	-1.836622909621092	GACACTACCCGTGTG
chr13	29917459	29917460	chr13:29917460:C:T	rs11616381	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr13	30002990	30002991	chr13:30002991:C:T	rs3119823	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr13	30098525	30098526	chr13:30098526:C:T	rs9551833	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr13	30100154	30100155	chr13:30100155:C:T	rs78258405	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr13	30100172	30100173	chr13:30100173:A:G	rs4516061	A	G	A	Sox1_MA0870.1	13	1	-	7.803123413222426	5.625468115771433	TCCAATATGATTGTT
chr13	30333071	30333072	chr13:30333072:T:C	rs200513	T	C	C	Sox1_MA0870.1	13	1	+	6.879247845451532	4.701592548000538	CACAATTACATTTTG
chr13	30467952	30467953	chr13:30467953:T:C	rs76914980	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr13	30479785	30479786	chr13:30479786:T:C	rs67587035	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr13	30570072	30570073	chr13:30570073:G:C	rs190291272	G	C	G	Sox1_MA0870.1	29	0	-	0	0	.
chr13	30570109	30570110	chr13:30570110:G:A	rs746548435	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr13	30673409	30673410	chr13:30673410:A:G	rs73458665	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr13	30937698	30937699	chr13:30937699:C:T	rs73165072	C	T	C	Sox1_MA0870.1	4	1	+	3.9368198278256203	-0.8839454917193511	GACACTAGGAGTGCA
chr13	31050606	31050607	chr13:31050607:A:G	rs17537328	A	G	A	Sox1_MA0870.1	6	1	+	9.53062310040439	7.992016407263673	TGCAATACCATTGTG
chr13	31629790	31629791	chr13:31629791:C:A	rs56273238	C	A	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr13	31629803	31629804	chr13:31629804:T:C	rs7317196	T	C	T	Sox1_MA0870.1	11	1	+	7.224258553660196	2.268863567849862	CACCATGGCAGTGTT
chr13	32539417	32539418	chr13:32539418:T:C	rs1886316	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr13	32587437	32587438	chr13:32587438:A:G	rs797994	A	G	G	Sox1_MA0870.1	13	1	-	4.7334636383877475	2.555808340936754	TAAAATAACAGTGTA
chr13	32587453	32587454	chr13:32587454:G:A	rs57775004	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr13	32587462	32587463	chr13:32587463:A:G	chr13:32587463:A:G	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr13	32657453	32657454	chr13:32657454:T:G	rs498372	T	G	T	Sox1_MA0870.1	13	1	+	5.144605561154613	1.5020578345175402	GACCCTATCAGTGTC
chr13	32921121	32921122	chr13:32921122:C:G	rs17078111	C	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	33107029	33107030	chr13:33107030:C:A	rs554588	C	A	C	Sox1_MA0870.1	30	0	-	0	0	.
chr13	33115883	33115884	chr13:33115884:A:G	rs9527088	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr13	33166079	33166080	chr13:33166080:T:C	rs17078655	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	33166080	33166081	chr13:33166081:G:A	rs76861306	G	A	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr13	33258729	33258730	chr13:33258730:A:G	rs7328838	A	G	G	Sox1_MA0870.1	11	1	-	4.0965004833974525	-0.8588945024128819	CAGAATTCCATTGCA
chr13	33281685	33281686	chr13:33281686:C:T	rs74556393	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr13	33281697	33281698	chr13:33281698:T:C	rs78398649	T	C	T	Sox1_MA0870.1	11	1	+	4.750699149801618	-0.2046958360087161	CTCAAAGACATTGTA
chr13	33283542	33283543	chr13:33283543:A:G	rs4445771	A	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr13	33353608	33353609	chr13:33353609:C:T	rs182994572	C	T	T	Sox1_MA0870.1	2	1	+	6.384608835521247	-0.5241459437939752	GACGATTGCATTGTG
chr13	33601205	33601206	chr13:33601206:A:T	rs115530662	A	T	A	Sox1_MA0870.1	10	1	-	5.795145984128384	-1.0135511000079496	AACAAAAACATTTTT
chr13	33743709	33743710	chr13:33743710:C:T	rs9538521	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr13	33744048	33744049	chr13:33744049:G:A	rs12857048	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	33744071	33744072	chr13:33744072:T:C	rs7139476	T	C	C	Sox1_MA0870.1	11	1	+	9.302649098500822	4.347254112690489	CACACTGACATTGCC
chr13	33746349	33746350	chr13:33746350:T:C	chr13:33746350:T:C	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr13	33794828	33794829	chr13:33794829:A:G	rs9538628	A	G	a	Sox1_MA0870.1	-4	0	-	0	0	.
chr13	33818771	33818772	chr13:33818772:G:A	rs3135537	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr13	33862012	33862013	chr13:33862013:G:A	rs78255357	G	A	g	Sox1_MA0870.1	34	0	-	0	0	.
chr13	34369839	34369840	chr13:34369840:C:A	rs71438033	C	A	C	Sox1_MA0870.1	12	1	-	5.161647096442812	-1.7471076828724086	GCCACTTTCATTGCA
chr13	34428333	34428334	chr13:34428334:A:T	rs73181242	A	T	A	Sox1_MA0870.1	7	1	+	6.194868607471024	5.7532787273866095	GTCAATAACCTTGTT
chr13	34639096	34639097	chr13:34639097:C:T	rs11147555	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr13	34735013	34735014	chr13:34735014:C:T	rs76581068	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr13	34942329	34942330	chr13:34942330:G:A	chr13:34942330:G:A	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	35164744	35164745	chr13:35164745:G:A	rs76006897	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr13	35381206	35381207	chr13:35381207:G:A	rs1824603	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr13	35481170	35481171	chr13:35481171:C:G	rs9315347	C	G	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr13	35594364	35594365	chr13:35594365:C:T	rs150804124	C	T	C	Sox1_MA0870.1	2	1	+	8.626853454191966	1.7180986748767468	GGCAATTTCAGTGTT
chr13	35723840	35723841	chr13:35723841:C:T	rs9593405	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr13	35724161	35724162	chr13:35724162:G:A	rs7318433	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr13	35781542	35781543	chr13:35781543:C:T	rs9545332	C	T	T	Sox1_MA0870.1	4	1	+	8.112315562895981	3.2915502433510113	CTCACTTTCATTGTG
chr13	35823297	35823298	chr13:35823298:G:A	rs73176184	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr13	35961234	35961235	chr13:35961235:A:G	rs142040125	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr13	35979423	35979424	chr13:35979424:A:C	chr13:35979424:A:C	A	C	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr13	36061172	36061173	chr13:36061173:C:A	rs9593728	C	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	36198243	36198244	chr13:36198244:G:A	rs2149423	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr13	36686233	36686234	chr13:36686234:G:C	rs1980203	G	C	G	Sox1_MA0870.1	8	1	-	6.908526518680245	3.138023525779908	AACACTTGCAGTGAA
chr13	37457766	37457767	chr13:37457767:T:C	rs61947270	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr13	37484445	37484446	chr13:37484446:G:T	rs9635084	G	T	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	37549696	37549697	chr13:37549697:T:A	rs12583789	T	A	T	Sox1_MA0870.1	1	1	-	4.129087808037361	0.8518035608762226	CACAAAACCATTTTT
chr13	38349945	38349946	chr13:38349946:A:T	rs2231330	A	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr13	38740667	38740668	chr13:38740668:G:T	rs112497440	G	T	G	Sox1_MA0870.1	1	1	-	3.5050785123848964	7.274218897229395	GCCAATAGCACTGTA
chr13	39158692	39158693	chr13:39158693:A:G	rs4143185	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr13	39263428	39263429	chr13:39263429:T:C	rs1930813	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr13	39462809	39462810	chr13:39462810:C:A	rs7983763	C	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr13	39515067	39515068	chr13:39515068:C:G	rs9315697	C	G	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr13	39823070	39823071	chr13:39823071:T:A	rs6563758	T	A	T	Sox1_MA0870.1	13	1	+	5.02534815940807	1.6798221328189102	ACCACAATCATTGTC
chr13	39969355	39969356	chr13:39969356:T:C	rs9549021	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr13	40121082	40121083	chr13:40121083:A:C	rs9603680	A	C	A	Sox1_MA0870.1	26	0	+	0	0	.
chr13	40183633	40183634	chr13:40183634:A:T	rs9549095	A	T	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	40190066	40190067	chr13:40190067:C:T	rs190727735	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr13	40350390	40350391	chr13:40350391:C:T	rs9532534	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr13	40380000	40380001	chr13:40380001:C:T	rs1107665	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr13	40388658	40388659	chr13:40388659:A:C	rs35837446	A	C	A	Sox1_MA0870.1	11	1	-	4.213903716177181	-2.6888289706796513	CACAAATGCAGTGGT
chr13	40484108	40484109	chr13:40484109:G:A	rs7982453	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr13	40799117	40799118	chr13:40799118:G:A	rs41396747	G	A	.	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	41054444	41054445	chr13:41054445:T:C	rs116696871	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr13	41179673	41179674	chr13:41179674:T:C	rs56214608	T	C	t	Sox1_MA0870.1	4	1	-	6.3422399559021265	-0.43533829826806014	GTCAATATCAGTGCA
chr13	41325266	41325267	chr13:41325267:A:G	rs28501271	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr13	41751058	41751059	chr13:41751059:A:G	rs12584644	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr13	41834156	41834157	chr13:41834157:A:G	rs7327866	A	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr13	41855688	41855689	chr13:41855689:C:G	rs11617451	C	G	C	Sox1_MA0870.1	12	1	-	9.411466454188576	2.5027116748733547	AACAATTCCCTTGTT
chr13	41960014	41960015	chr13:41960015:A:G	rs117166704	A	G	A	Sox1_MA0870.1	7	1	-	6.7046465875465575	6.716475640094931	GTCAATGTCAGTGCT
chr13	41973696	41973697	chr13:41973697:A:G	rs73466991	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr13	41974842	41974843	chr13:41974843:A:G	rs7328352	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr13	42066204	42066205	chr13:42066205:A:G	rs6561033	A	G	A	Sox1_MA0870.1	8	1	-	10.935096838051066	15.11670638468835	CACAATTGTATTGTT
chr13	42073910	42073911	chr13:42073911:T:G	rs2166622	T	G	G	Sox1_MA0870.1	25	0	-	0	0	.
chr13	42105458	42105459	chr13:42105459:C:A	rs611760	C	A	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr13	42164974	42164975	chr13:42164975:C:G	chr13:42164975:C:G	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr13	42267039	42267040	chr13:42267040:G:A	rs746447	G	A	A	Sox1_MA0870.1	22	0	+	0	0	.
chr13	42275807	42275808	chr13:42275808:G:A	rs4942104	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr13	42524191	42524192	chr13:42524192:A:G	rs4942139	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr13	42749959	42749960	chr13:42749960:C:A	rs1830730	C	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr13	42836980	42836981	chr13:42836981:T:C	rs1453967568	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr13	42971393	42971394	chr13:42971394:T:C	rs117398639	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr13	42977122	42977123	chr13:42977123:A:G	rs7319676	A	G	G	Sox1_MA0870.1	3	1	+	4.4386828367991455	-2.4619068303980796	AACACTAACAGTCCT
chr13	43003563	43003564	chr13:43003564:G:C	rs33926053	G	C	G	Sox1_MA0870.1	12	1	+	11.624079588780212	4.715324809464993	AACACTAACAGTGTA
chr13	43150602	43150603	chr13:43150603:T:A	rs74594512	T	A	T	Sox1_MA0870.1	21	0	-	0	0	.
chr13	43153764	43153765	chr13:43153765:A:G	rs76892185	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr13	43179967	43179968	chr13:43179968:C:T	rs9533414	C	T	C	Sox1_MA0870.1	12	1	-	3.6699443570890153	-3.2388104222262046	TACAGTTGCAGTGTG
chr13	43179968	43179969	chr13:43179969:A:G	rs9533415	A	G	G	Sox1_MA0870.1	11	1	-	3.6699443570890153	-1.2854506287213185	TACAGTTGCAGTGTG
chr13	43233079	43233080	chr13:43233080:G:T	rs75559699	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr13	43343987	43343988	chr13:43343988:G:A	rs1317310	G	A	A	Sox1_MA0870.1	2	1	-	5.654430705208538	-1.2543240741066812	CTCAATGCCAGTGAT
chr13	43545321	43545322	chr13:43545322:A:T	rs9533521	A	T	A	Sox1_MA0870.1	11	1	-	7.933239549446704	1.0305068625898715	AACAATTGCATTTTC
chr13	43732876	43732877	chr13:43732877:G:C	rs9567256	G	C	G	Sox1_MA0870.1	29	0	-	0	0	.
chr13	43732905	43732906	chr13:43732906:C:T	rs17461155	C	T	C	Sox1_MA0870.1	0	1	-	5.09853264885591	6.440655791662662	GGCACTGACATTGCC
chr13	43788089	43788090	chr13:43788090:T:C	rs77634831	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	43801193	43801194	chr13:43801194:G:A	rs1888302	G	A	A	Sox1_MA0870.1	9	1	-	4.361058195890605	4.361058195890605	AACAATATGCGTGTT
chr13	44136424	44136425	chr13:44136425:A:G	rs9525917	A	G	A	Sox1_MA0870.1	13	1	-	5.635978425492628	3.458323128041635	ATAAATAACATTGTA
chr13	44304475	44304476	chr13:44304476:T:G	rs1175215	T	G	T	Sox1_MA0870.1	25	0	+	0	0	.
chr13	44541182	44541183	chr13:44541183:C:T	rs12184878	C	T	C	Sox1_MA0870.1	13	1	-	5.214915336176629	5.511937036224543	AACACTAACTTTGGT
chr13	44649734	44649735	chr13:44649735:T:A	rs9595168	T	A	C	Sox1_MA0870.1	1	1	-	4.873383151271099	1.5960989041099598	AACACTATCAATGGT
chr13	44653566	44653567	chr13:44653567:T:C	rs9533939	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr13	44871034	44871035	chr13:44871035:C:T	rs9533986	C	T	C	Sox1_MA0870.1	12	1	-	4.64414500934636	-2.2646097699688608	CACAATTACAGAGTG
chr13	45441832	45441833	chr13:45441833:C:T	rs184634332	C	T	.	Sox1_MA0870.1	-9	0	+	0	0	.
chr13	45441856	45441857	chr13:45441857:G:A	rs75045891	G	A	.	Sox1_MA0870.1	15	0	+	0	0	.
chr13	45441859	45441860	chr13:45441860:T:G	rs116020254	T	G	.	Sox1_MA0870.1	18	0	+	0	0	.
chr13	45530188	45530189	chr13:45530189:G:A	rs2985988	G	A	G	Sox1_MA0870.1	12	1	+	4.28661243633355	-2.6221423429816713	GACCCTTACATTGCA
chr13	46170145	46170146	chr13:46170146:A:G	rs74074037	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	46170163	46170164	chr13:46170164:T:C	rs59792695	T	C	T	Sox1_MA0870.1	14	1	+	6.632666450801635	5.12165704632023	AACAATAATATTCTT
chr13	47007500	47007501	chr13:47007501:T:A	rs1012374	T	A	T	Sox1_MA0870.1	33	0	+	0	0	.
chr13	47033365	47033366	chr13:47033366:A:G	rs149178528	A	G	A	Sox1_MA0870.1	5	1	-	5.520184473386697	-1.3829802852610622	CACAATGTCAATGCT
chr13	47182172	47182173	chr13:47182173:T:C	rs4142742	T	C	C	Sox1_MA0870.1	6	1	-	6.366864648150159	4.828257955009441	AACAGTAGTATTGTT
chr13	47437116	47437117	chr13:47437117:T:A	rs73182236	T	A	T	Sox1_MA0870.1	23	0	-	0	0	.
chr13	47808038	47808039	chr13:47808039:C:T	rs2209381	C	T	C	Sox1_MA0870.1	8	1	+	6.532711002950902	2.3511014563136174	AACACTACCATGGTA
chr13	48066236	48066237	chr13:48066237:C:T	rs2094192	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	48210351	48210352	chr13:48210352:T:C	rs187519156	T	C	T	Sox1_MA0870.1	8	1	+	4.915583784521374	9.097193331158655	CTCACTACTATTGTG
chr13	48210356	48210357	chr13:48210357:T:A	rs192088366	T	A	T	Sox1_MA0870.1	13	1	+	4.915583784521374	1.5700577579322146	CTCACTACTATTGTG
chr13	48302467	48302468	chr13:48302468:G:A	rs182786995	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr13	48515847	48515848	chr13:48515848:T:G	rs41284772	T	G	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr13	48924189	48924190	chr13:48924190:G:A	rs1449582	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	49184008	49184009	chr13:49184009:A:G	rs35018425	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr13	49293125	49293126	chr13:49293126:C:A	rs7993195	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	49293153	49293154	chr13:49293154:T:C	rs3087770	T	C	T	Sox1_MA0870.1	14	1	+	8.279452858636871	6.7684434541554666	AACACTGAGATTGCT
chr13	49764583	49764584	chr13:49764584:T:A	rs73485710	T	A	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr13	50069451	50069452	chr13:50069452:C:A	rs2066569	C	A	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	50156896	50156897	chr13:50156897:A:G	rs889800377	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr13	50680059	50680060	chr13:50680060:A:G	rs1272436	A	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr13	50708547	50708548	chr13:50708548:G:A	rs797510	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr13	50894243	50894244	chr13:50894244:G:A	rs11842683	G	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr13	50901984	50901985	chr13:50901985:A:G	rs74998667	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr13	51158911	51158912	chr13:51158912:A:T	rs11148211	A	T	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr13	51159555	51159556	chr13:51159556:C:G	rs9568536	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr13	51163882	51163883	chr13:51163883:G:A	rs7331971	G	A	G	Sox1_MA0870.1	8	1	-	5.246311090739331	1.064701544102049	AACACTTGCGGTGTT
chr13	51256576	51256577	chr13:51256577:G:C	rs7982205	G	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr13	51322182	51322183	chr13:51322183:C:T	rs9535644	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr13	51733846	51733847	chr13:51733847:A:G	rs118127270	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr13	52193774	52193775	chr13:52193775:G:C	rs9535897	G	C	G	Sox1_MA0870.1	32	0	-	0	0	.
chr13	52193823	52193824	chr13:52193824:A:C	chr13:52193824:A:C	A	C	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr13	52618130	52618131	chr13:52618131:A:G	rs536807902	A	G	a	Sox1_MA0870.1	-1	0	+	0	0	.
chr13	52835614	52835615	chr13:52835615:G:A	rs644701	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr13	52949816	52949817	chr13:52949817:C:T	rs2018259	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr13	52949818	52949819	chr13:52949819:C:T	rs1077506	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	53049099	53049100	chr13:53049100:G:C	rs2185961	G	C	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr13	55200302	55200303	chr13:55200303:T:C	rs7992633	T	C	T	Sox1_MA0870.1	13	1	+	5.320856184667241	3.143200887216246	TGCACTATCAGTGTG
chr13	55252319	55252320	chr13:55252320:T:C	rs12323147	T	C	C	Sox1_MA0870.1	4	1	-	3.4307067323867244	-3.3468715217834624	GACAACGCCATTGCA
chr13	55334235	55334236	chr13:55334236:G:A	rs9569299	G	A	-	Sox1_MA0870.1	17	0	-	0	0	.
chr13	55389794	55389795	chr13:55389795:A:G	rs3105043	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr13	55425071	55425072	chr13:55425072:A:G	rs2937338	A	G	G	Sox1_MA0870.1	1	1	+	4.383432574214678	0.2851419188215366	CACATTGTCATTGAT
chr13	55435986	55435987	chr13:55435987:G:A	rs2315881	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr13	56779417	56779418	chr13:56779418:G:T	rs3904633	G	T	G	Sox1_MA0870.1	17	0	+	0	0	.
chr13	56860459	56860460	chr13:56860460:G:C	rs7333137	G	C	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr13	57129186	57129187	chr13:57129187:G:A	rs12428352	G	A	G	Sox1_MA0870.1	4	1	-	6.879570210719161	2.05880489117419	CCCACTGTCATTGTA
chr13	57825473	57825474	chr13:57825474:C:A	rs9569759	C	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr13	57832751	57832752	chr13:57832752:G:A	rs9527712	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr13	57832752	57832753	chr13:57832753:A:C	rs9537823	A	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr13	58293750	58293751	chr13:58293751:T:C	rs11148431	T	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	58620927	58620928	chr13:58620928:A:T	rs117878781	A	T	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr13	58625941	58625942	chr13:58625942:G:A	rs9317005	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr13	58687090	58687091	chr13:58687091:A:G	rs4886100	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr13	58759941	58759942	chr13:58759942:T:G	rs9597833	T	G	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr13	58759942	58759943	chr13:58759943:G:A	rs12017769	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr13	58802271	58802272	chr13:58802272:A:G	rs9538215	A	G	A	Sox1_MA0870.1	3	1	+	4.693845929154059	-2.206743738043166	CACAATGACATTTAT
chr13	58906202	58906203	chr13:58906203:C:A	rs12430761	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr13	59127697	59127698	chr13:59127698:C:T	rs74084015	C	T	C	Sox1_MA0870.1	12	1	-	12.607843807691129	5.699089028375908	AACAATTACAGTGTA
chr13	59269888	59269889	chr13:59269889:T:C	rs1327959	T	C	t	Sox1_MA0870.1	-15	0	+	0	0	.
chr13	59602117	59602118	chr13:59602118:A:G	rs474813	A	G	A	Sox1_MA0870.1	4	1	+	5.385291907763662	-1.3922863464065252	CTCAATAATATTGGT
chr13	59751150	59751151	chr13:59751151:G:A	rs144424118	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr13	60000363	60000364	chr13:60000364:A:C	chr13:60000364:A:C	A	C	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr13	60134532	60134533	chr13:60134533:A:G	rs9598090	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr13	60146981	60146982	chr13:60146982:T:C	rs9538575	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr13	60169554	60169555	chr13:60169555:C:A	rs4886214	C	A	A	Sox1_MA0870.1	17	0	-	0	0	.
chr13	60473123	60473124	chr13:60473124:T:A	rs11843259	T	A	T	Sox1_MA0870.1	21	0	+	0	0	.
chr13	60958023	60958024	chr13:60958024:T:C	chr13:60958024:T:C	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr13	61149274	61149275	chr13:61149275:G:A	rs9563888	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr13	61149324	61149325	chr13:61149325:G:A	rs9539048	G	A	A	Sox1_MA0870.1	31	0	+	0	0	.
chr13	61410541	61410542	chr13:61410542:T:C	rs188101441	T	C	T	Sox1_MA0870.1	11	1	+	3.5661663193949367	-1.3892286664153977	AACAAGTGCAGTGGT
chr13	61675618	61675619	chr13:61675619:C:T	rs9598336	C	T	C	Sox1_MA0870.1	12	1	-	8.914778530640827	2.0060237513256074	TTCAATTTCATTGCT
chr13	61730810	61730811	chr13:61730811:G:A	rs2050859	G	A	A	Sox1_MA0870.1	12	1	+	3.8046679500826968	-3.104086829232523	GACACGGACATTGCT
chr13	62176096	62176097	chr13:62176097:A:G	rs308615	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr13	62305197	62305198	chr13:62305198:G:A	rs309104	G	A	G	Sox1_MA0870.1	8	1	-	8.636620699987922	4.45501115335064	AACAATAACCTTGCT
chr13	62336474	62336475	chr13:62336475:A:G	rs365277	A	G	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	62484187	62484188	chr13:62484188:G:C	rs7981934	G	C	G	Sox1_MA0870.1	22	0	+	0	0	.
chr13	62798774	62798775	chr13:62798775:C:T	rs9570737	C	T	-	Sox1_MA0870.1	0	1	+	7.336725434855572	6.634348677708093	CGCAATTACATTGCA
chr13	62997389	62997390	chr13:62997390:C:T	rs75114128	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	63042875	63042876	chr13:63042876:G:C	rs75324258	G	C	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	63042877	63042878	chr13:63042878:A:G	rs74638126	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr13	63048980	63048981	chr13:63048981:A:G	rs79813497	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	63058435	63058436	chr13:63058436:T:G	rs77622340	T	G	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr13	63058444	63058445	chr13:63058445:C:G	rs75390202	C	G	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr13	63066046	63066047	chr13:63066047:G:A	rs79815842	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr13	63285192	63285193	chr13:63285193:A:G	rs298801	A	G	a	Sox1_MA0870.1	28	0	-	0	0	.
chr13	63294429	63294430	chr13:63294430:A:T	rs7334896	A	T	T	Sox1_MA0870.1	1	1	+	8.961734408051985	5.6844501608908455	AACAATATCACTGTC
chr13	63374891	63374892	chr13:63374892:C:A	rs9317303	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr13	63419765	63419766	chr13:63419766:A:G	rs9539741	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr13	63433784	63433785	chr13:63433785:A:G	rs597714	A	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr13	63551589	63551590	chr13:63551590:G:A	rs9564075	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr13	63848805	63848806	chr13:63848806:G:C	rs536914	G	C	.	Sox1_MA0870.1	-3	0	+	0	0	.
chr13	64239489	64239490	chr13:64239490:G:T	rs1354167380	G	T	G	Sox1_MA0870.1	15	0	+	0	0	.
chr13	64274512	64274513	chr13:64274513:G:C	rs74086903	G	C	G	Sox1_MA0870.1	8	1	-	5.180143138796251	1.409640145895914	AACAAAGTCATTGGA
chr13	64659902	64659903	chr13:64659903:T:C	rs359359	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	64813339	64813340	chr13:64813340:T:A	rs2875393	T	A	T	Sox1_MA0870.1	1	1	-	4.241866620462327	0.9645823733011859	AACACTTACTTTGGT
chr13	65497229	65497230	chr13:65497230:C:G	rs7323600	C	G	G	Sox1_MA0870.1	4	1	+	3.583335365946185	-1.2374299535987865	ACCACTAACATAGTC
chr13	65497247	65497248	chr13:65497248:T:A	rs7324970	T	A	A	Sox1_MA0870.1	22	0	+	0	0	.
chr13	65680365	65680366	chr13:65680366:T:C	rs11617205	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr13	65855199	65855200	chr13:65855200:G:C	rs1027484452	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr13	66383400	66383401	chr13:66383401:G:A	rs9529055	G	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr13	66412715	66412716	chr13:66412716:G:A	rs9540740	G	A	g	Sox1_MA0870.1	2	1	-	10.384568644888587	3.475813865573367	GACACTAGCATTGGT
chr13	66624592	66624593	chr13:66624593:A:G	rs9529106	A	G	A	Sox1_MA0870.1	4	1	+	9.949127336867145	3.171549082696958	AACAATTTTATTGCT
chr13	66755782	66755783	chr13:66755783:T:G	rs9571646	T	G	T	Sox1_MA0870.1	21	0	-	0	0	.
chr13	66805678	66805679	chr13:66805679:T:A	rs17081881	T	A	T	Sox1_MA0870.1	4	1	-	5.229856907551293	-1.547721346618895	AACAATTCTATTTTT
chr13	66996976	66996977	chr13:66996977:T:C	rs7336507	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr13	67221443	67221444	chr13:67221444:G:A	rs61960878	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr13	67439214	67439215	chr13:67439215:T:C	rs1781573	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr13	67792444	67792445	chr13:67792445:A:T	rs8000229	A	T	T	Sox1_MA0870.1	20	0	-	0	0	.
chr13	68173849	68173850	chr13:68173850:A:C	rs567491734	A	C	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	69487792	69487793	chr13:69487793:G:A	rs73206486	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr13	69487795	69487796	chr13:69487796:A:G	rs1393658	A	G	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr13	69856886	69856887	chr13:69856887:C:T	rs2325246	C	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr13	70042905	70042906	chr13:70042906:G:C	rs79303832	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr13	70090030	70090031	chr13:70090031:T:A	rs9572362	T	A	T	Sox1_MA0870.1	8	1	+	6.521632628570048	4.810072520889117	ATCAATAGTATTGAT
chr13	70311098	70311099	chr13:70311099:T:A	rs11616647	T	A	T	Sox1_MA0870.1	17	0	-	0	0	.
chr13	70457662	70457663	chr13:70457663:A:C	rs9564696	A	C	C	Sox1_MA0870.1	3	1	+	4.546238054722445	-0.5395268703157299	TCCACTTGCAGTGTA
chr13	70916767	70916768	chr13:70916768:T:C	rs2325352	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr13	71210488	71210489	chr13:71210489:A:G	rs9572687	A	G	A	Sox1_MA0870.1	4	1	+	5.369191240187827	-1.4083870139823613	GTCAATTTCAGTGCA
chr13	71318064	71318065	chr13:71318065:C:T	rs9599825	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr13	71521016	71521017	chr13:71521017:A:G	rs35257173	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr13	71789889	71789890	chr13:71789890:C:A	rs748676	C	A	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr13	72044188	72044189	chr13:72044189:G:T	rs9318053	G	T	G	Sox1_MA0870.1	18	0	-	0	0	.
chr13	72151574	72151575	chr13:72151575:T:G	rs585032	T	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr13	72220871	72220872	chr13:72220872:G:A	rs659265	G	A	g	Sox1_MA0870.1	-5	0	-	0	0	.
chr13	72295358	72295359	chr13:72295359:G:A	rs113707011	G	A	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr13	72410574	72410575	chr13:72410575:G:A	rs17089337	G	A	G	Sox1_MA0870.1	0	1	+	7.359694545487455	8.701817688294208	GTCACTATCATTGAT
chr13	72681606	72681607	chr13:72681607:C:T	rs9543063	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr13	72694345	72694346	chr13:72694346:T:C	rs117480089	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	73138036	73138037	chr13:73138037:C:T	rs12873808	C	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr13	73274325	73274326	chr13:73274326:G:A	rs9592900	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr13	73366108	73366109	chr13:73366109:A:G	rs9543331	A	G	A	Sox1_MA0870.1	10	1	-	5.299980691361581	-1.5087163927747516	AACTATAACATTTTT
chr13	73390115	73390116	chr13:73390116:A:T	rs9573186	A	T	A	Sox1_MA0870.1	26	0	+	0	0	.
chr13	73618669	73618670	chr13:73618670:A:G	rs138426676	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr13	73708483	73708484	chr13:73708484:G:T	rs150823534	G	T	G	Sox1_MA0870.1	2	1	-	4.519191568406523	-2.389563210908699	AACAATGACACTGAC
chr13	73803307	73803308	chr13:73803308:C:T	rs879800	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr13	74088059	74088060	chr13:74088060:G:A	rs7328778	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	74112708	74112709	chr13:74112709:C:T	rs9565077	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	74114359	74114360	chr13:74114360:A:G	rs9573349	A	G	A	Sox1_MA0870.1	5	1	-	7.455318233369326	0.5521534747215647	CAAAATAGCATTGTG
chr13	74172044	74172045	chr13:74172045:T:C	rs7990716	T	C	T	Sox1_MA0870.1	10	1	+	5.686141863515218	-1.1225552206211167	CACTATACCATTGAC
chr13	74450018	74450019	chr13:74450019:A:G	rs2184434	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr13	74630034	74630035	chr13:74630035:G:A	rs1359690	G	A	G	Sox1_MA0870.1	8	1	-	10.115495395894145	5.933885849256864	TACAATGTCATTGCC
chr13	74767308	74767309	chr13:74767309:T:C	rs9600379	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr13	74807330	74807331	chr13:74807331:G:A	rs138094387	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr13	74811168	74811169	chr13:74811169:C:A	rs4307837	C	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr13	74907839	74907840	chr13:74907840:G:A	rs1258992620	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr13	75093117	75093118	chr13:75093118:A:C	rs138764112	A	C	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr13	75254234	75254235	chr13:75254235:T:A	rs9318328	T	A	T	Sox1_MA0870.1	30	0	-	0	0	.
chr13	75365368	75365369	chr13:75365369:G:C	rs4052617	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr13	75425550	75425551	chr13:75425551:G:A	rs12876647	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr13	75495543	75495544	chr13:75495544:T:C	rs75697026	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr13	75881004	75881005	chr13:75881005:G:A	rs9600573	G	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr13	75881021	75881022	chr13:75881022:G:C	rs9600574	G	C	G	Sox1_MA0870.1	8	1	-	6.763361384224875	2.9928583913245386	AACAAAAGCATTGGA
chr13	75931309	75931310	chr13:75931310:G:A	rs7339019	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr13	76124436	76124437	chr13:76124437:G:T	rs4884041	G	T	G	Sox1_MA0870.1	7	1	-	4.129087808037361	4.558848635573402	CACAAAACCATTATT
chr13	76129749	76129750	chr13:76129750:A:G	rs4885385	A	G	G	Sox1_MA0870.1	6	1	+	6.8529076770967565	5.314300983956037	GACAATATCATTCCT
chr13	76266414	76266415	chr13:76266415:A:C	chr13:76266415:A:C	A	C	A	Sox1_MA0870.1	29	0	-	0	0	.
chr13	76489394	76489395	chr13:76489395:A:G	rs493863	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr13	76489426	76489427	chr13:76489427:G:A	rs493779	G	A	A	Sox1_MA0870.1	12	1	+	8.477262813236816	1.5685080339215962	AACAACATCATTGTA
chr13	76532372	76532373	chr13:76532373:T:G	rs1332595	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	76787580	76787581	chr13:76787581:C:T	rs76842352	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr13	76787617	76787618	chr13:76787618:A:G	rs8000613	A	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr13	76953571	76953572	chr13:76953572:A:G	rs9530614	A	G	A	Sox1_MA0870.1	6	1	+	3.6370858027161197	2.0984791095754027	CACACTATCACTGGT
chr13	77330025	77330026	chr13:77330026:G:A	rs115736965	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr13	77565911	77565912	chr13:77565912:C:T	rs488942	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr13	77679191	77679192	chr13:77679192:C:T	rs1343911	C	T	c	Sox1_MA0870.1	-19	0	-	0	0	.
chr13	77741059	77741060	chr13:77741060:C:T	rs1018490530	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr13	77853978	77853979	chr13:77853979:G:A	rs3027083	G	A	g	Sox1_MA0870.1	-15	0	-	0	0	.
chr13	77916774	77916775	chr13:77916775:C:A	rs12720176	C	A	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr13	77916792	77916793	chr13:77916793:C:T	rs12720174	C	T	C	Sox1_MA0870.1	13	1	+	4.486504403701195	6.66415970115219	CACAATTCCATTTCC
chr13	77981524	77981525	chr13:77981525:T:C	rs1254790708	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr13	78037103	78037104	chr13:78037104:T:C	rs118025507	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr13	78239442	78239443	chr13:78239443:G:A	rs9318531	G	A	A	Sox1_MA0870.1	15	0	-	0	0	.
chr13	78276040	78276041	chr13:78276041:G:A	rs9601024	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr13	78302401	78302402	chr13:78302402:T:C	rs7996252	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr13	78403318	78403319	chr13:78403319:C:T	rs4885537	C	T	C	Sox1_MA0870.1	13	1	+	8.637561813062678	10.815217110513672	CACAATAAGATTGCA
chr13	78881360	78881361	chr13:78881361:G:A	rs113601301	G	A	G	Sox1_MA0870.1	11	1	+	6.626573876767926	6.626573876767926	AACAATATCAGGGTC
chr13	79532035	79532036	chr13:79532036:C:T	rs117613930	C	T	c	Sox1_MA0870.1	18	0	+	0	0	.
chr13	79532037	79532038	chr13:79532038:A:G	rs73553418	A	G	a	Sox1_MA0870.1	20	0	+	0	0	.
chr13	79851156	79851157	chr13:79851157:G:C	rs7337191	G	C	C	Sox1_MA0870.1	2	1	-	11.249013119196533	4.340258339881313	AACAATTCCATTGAG
chr13	80049210	80049211	chr13:80049211:A:C	rs7981942	A	C	A	Sox1_MA0870.1	16	0	-	0	0	.
chr13	80191680	80191681	chr13:80191681:G:C	rs518627	G	C	G	Sox1_MA0870.1	23	0	-	0	0	.
chr13	80214062	80214063	chr13:80214063:A:G	rs116940019	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr13	80523242	80523243	chr13:80523243:A:G	rs9545456	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr13	80563220	80563221	chr13:80563221:G:T	rs1539716	G	T	G	Sox1_MA0870.1	0	1	-	5.333235706675957	6.569533055230936	CTCAACTACATTGTT
chr13	80611313	80611314	chr13:80611314:G:A	rs1612400	G	A	A	Sox1_MA0870.1	10	1	+	5.428392597948671	0.860820442375897	TACAAATGCAGTGTG
chr13	80634935	80634936	chr13:80634936:C:A	rs1176288	C	A	A	Sox1_MA0870.1	13	1	-	4.620241894922681	8.262789621559754	CACAATACAATTGGA
chr13	80871824	80871825	chr13:80871825:T:C	rs17073466	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr13	80904106	80904107	chr13:80904107:A:G	rs77954875	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	80904138	80904139	chr13:80904139:C:T	rs12863227	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr13	81343393	81343394	chr13:81343394:G:C	rs1146983	G	C	G	Sox1_MA0870.1	23	0	-	0	0	.
chr13	81343924	81343925	chr13:81343925:G:A	rs9565651	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr13	81354921	81354922	chr13:81354922:A:T	rs1287501	A	T	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr13	81783888	81783889	chr13:81783889:C:A	rs446371	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	82817211	82817212	chr13:82817212:T:G	rs61961333	T	G	T	Sox1_MA0870.1	27	0	-	0	0	.
chr13	82882362	82882363	chr13:82882363:C:T	rs148397260	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr13	83065084	83065085	chr13:83065085:A:G	rs17250231	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr13	83065100	83065101	chr13:83065101:T:C	rs117365247	T	C	T	Sox1_MA0870.1	14	1	+	5.673652575635428	4.1626431711540235	CACCCTAAGATTGTT
chr13	83200330	83200331	chr13:83200331:T:C	rs2669246	T	C	C	Sox1_MA0870.1	11	1	+	8.923125757478864	3.9677307716685313	GACACTACCATTGAG
chr13	83328195	83328196	chr13:83328196:C:T	rs1935717	C	T	T	Sox1_MA0870.1	4	1	+	4.676243447420565	-0.1445218721244066	TACACTATCACTGTA
chr13	83328224	83328225	chr13:83328225:C:T	rs73251365	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr13	83397295	83397296	chr13:83397296:A:C	rs9546370	A	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	83647434	83647435	chr13:83647435:G:A	rs2482445	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	84032286	84032287	chr13:84032287:G:A	rs7992606	G	A	A	Sox1_MA0870.1	16	0	+	0	0	.
chr13	84137216	84137217	chr13:84137217:A:G	rs9546612	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	84207330	84207331	chr13:84207331:C:G	rs2774062	C	G	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	84447928	84447929	chr13:84447929:T:C	rs9575576	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr13	84568117	84568118	chr13:84568118:A:G	chr13:84568118:A:G	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr13	85261696	85261697	chr13:85261697:T:C	rs2451428	T	C	T	Sox1_MA0870.1	9	1	-	5.351014892519213	-1.5577398867960075	TACATTTTCAGTGTT
chr13	85379949	85379950	chr13:85379950:A:G	rs7990259	A	G	A	Sox1_MA0870.1	6	1	-	6.2874843568019285	1.8713340696830287	TTCAATTACATTGAA
chr13	85695013	85695014	chr13:85695014:G:A	rs9531824	G	A	g	Sox1_MA0870.1	23	0	-	0	0	.
chr13	85717783	85717784	chr13:85717784:G:A	rs17080098	G	A	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr13	85798780	85798781	chr13:85798781:C:T	rs993170322	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr13	85943906	85943907	chr13:85943907:A:G	rs71442107	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr13	85985868	85985869	chr13:85985869:C:T	rs60258005	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr13	86051742	86051743	chr13:86051743:A:T	rs144625390	A	T	A	Sox1_MA0870.1	0	1	+	4.566556776367538	2.627882670665077	AACCATTACAGTGAC
chr13	86188298	86188299	chr13:86188299:G:A	rs878907166	G	A	g	Sox1_MA0870.1	-2	0	-	0	0	.
chr13	86201735	86201736	chr13:86201736:T:C	rs879064870	T	C	t	Sox1_MA0870.1	20	0	-	0	0	.
chr13	86201751	86201752	chr13:86201752:G:C	rs1238566106	G	C	N	Sox1_MA0870.1	4	1	-	7.539772349734024	2.7190070301890525	GACTCTTGCATTGTT
chr13	86862381	86862382	chr13:86862382:A:G	rs9561005	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr13	87332935	87332936	chr13:87332936:C:T	rs4038018	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr13	87390653	87390654	chr13:87390654:C:A	rs72639317	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	88337649	88337650	chr13:88337650:C:T	rs9520282	C	T	-	Sox1_MA0870.1	-19	0	+	0	0	.
chr13	88643919	88643920	chr13:88643920:G:A	rs4545671	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr13	88733568	88733569	chr13:88733569:G:A	rs9301486	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr13	89113990	89113991	chr13:89113991:T:A	rs1757451	T	A	T	Sox1_MA0870.1	9	1	-	4.196533036803556	-2.7122217425116637	CAAAATTTCAGTGTG
chr13	89206316	89206317	chr13:89206317:G:C	rs393546	G	C	C	Sox1_MA0870.1	2	1	-	6.164478640655238	-0.744276138659982	AACTATTACATTGAG
chr13	89376005	89376006	chr13:89376006:T:C	rs6492429	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr13	90281790	90281791	chr13:90281791:A:G	rs12866611	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr13	90444924	90444925	chr13:90444925:A:G	rs61971021	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr13	90955819	90955820	chr13:90955820:C:A	rs9523209	C	A	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	91041974	91041975	chr13:91041975:T:G	rs76386927	T	G	T	Sox1_MA0870.1	9	1	-	5.2520574720132736	-1.6566973073019469	AACTATTGCAGTGAT
chr13	91113046	91113047	chr13:91113047:C:T	rs558827	C	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr13	92029313	92029314	chr13:92029314:T:C	rs35021705	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr13	92224253	92224254	chr13:92224254:C:T	rs72636840	C	T	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr13	93819998	93819999	chr13:93819999:T:G	rs72643197	T	G	T	Sox1_MA0870.1	13	1	+	4.352426901620403	0.7098791749833294	ACCAATTACATAGTG
chr13	94239423	94239424	chr13:94239424:C:T	rs145147176	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	94608166	94608167	chr13:94608167:T:C	rs9524556	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr13	94903200	94903201	chr13:94903201:T:C	rs9561714	T	C	t	Sox1_MA0870.1	3	1	-	9.500655218933263	2.6000655517360367	AGCACTATCATTGTG
chr13	94944876	94944877	chr13:94944877:C:A	rs79477740	C	A	C	Sox1_MA0870.1	7	1	+	4.757176362268016	5.186937189804057	TAGAATACCATTGCC
chr13	94978602	94978603	chr13:94978603:A:T	rs9590150	A	T	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr13	95162521	95162522	chr13:95162522:G:A	rs34312897	G	A	G	Sox1_MA0870.1	3	1	+	3.7621710178906866	10.662760685087912	CGCGATAACATTGTG
chr13	95269133	95269134	chr13:95269134:C:T	rs2027445	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	95277541	95277542	chr13:95277542:T:C	rs2389233	T	C	T	Sox1_MA0870.1	10	1	+	5.248106565996308	-1.5605905181400255	GACCATGCCATTGCA
chr13	95496830	95496831	chr13:95496831:A:G	rs927788	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr13	95653124	95653125	chr13:95653125:C:G	rs61975172	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr13	96071519	96071520	chr13:96071520:G:A	rs536606	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr13	96256173	96256174	chr13:96256174:G:A	rs9525172	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr13	96272076	96272077	chr13:96272077:G:A	rs1927789	G	A	A	Sox1_MA0870.1	12	1	+	6.87770698335648	-0.0310477959587403	AACACAGCCATTGTA
chr13	96396704	96396705	chr13:96396705:G:C	rs7332928	G	C	G	Sox1_MA0870.1	4	1	-	4.589206132200571	-0.2315591873444004	GACACAAGCAGTGCT
chr13	97757882	97757883	chr13:97757883:G:C	rs1557024	G	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr13	97810223	97810224	chr13:97810224:G:C	rs140996504	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr13	98214802	98214803	chr13:98214803:A:G	rs9556909	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr13	98238801	98238802	chr13:98238802:G:T	rs2892898	G	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr13	98318539	98318540	chr13:98318540:A:G	rs627846	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr13	98366376	98366377	chr13:98366377:A:G	rs11616790	A	G	A	Sox1_MA0870.1	5	1	-	4.271204053235948	-2.631960705411811	GGCCATTTCATTGTC
chr13	98650929	98650930	chr13:98650930:A:G	rs980917085	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr13	98691613	98691614	chr13:98691614:T:G	rs71437973	T	G	T	Sox1_MA0870.1	4	1	-	7.1726693838766	5.215856449251382	CACAATAAGATTGGA
chr13	98691636	98691637	chr13:98691637:G:A	rs2390106	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr13	98986501	98986502	chr13:98986502:T:G	rs72651858	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	98996163	98996164	chr13:98996164:T:C	rs912688	T	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr13	99219443	99219444	chr13:99219444:T:G	rs11617167	T	G	T	Sox1_MA0870.1	22	0	+	0	0	.
chr13	99411160	99411161	chr13:99411161:A:G	rs61972469	A	G	A	Sox1_MA0870.1	9	1	+	4.2157417928092125	-2.6930129865060075	ATCACCTGCATTGTT
chr13	99431979	99431980	chr13:99431980:G:C	rs4772200	G	C	G	Sox1_MA0870.1	15	0	+	0	0	.
chr13	99564654	99564655	chr13:99564655:T:G	rs4290346	T	G	T	Sox1_MA0870.1	30	0	-	0	0	.
chr13	99590421	99590422	chr13:99590422:C:G	rs1572947	C	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr13	99653746	99653747	chr13:99653747:C:T	rs2039933	C	T	C	Sox1_MA0870.1	12	1	-	3.8421946014935098	-3.066560177821711	CACACTGTCAGCGTC
chr13	99803867	99803868	chr13:99803868:G:A	rs2390357	G	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr13	99859749	99859750	chr13:99859750:T:C	rs17658053	T	C	T	Sox1_MA0870.1	10	1	+	9.615450863441708	2.806753779305375	TACACTATGATTGTT
chr13	100040343	100040344	chr13:100040344:C:G	rs7320291	C	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr13	100132410	100132411	chr13:100132411:C:T	rs79783738	C	T	c	Sox1_MA0870.1	27	0	+	0	0	.
chr13	100473861	100473862	chr13:100473862:A:G	rs9518078	A	G	A	Sox1_MA0870.1	7	1	+	8.267049661530002	7.8700713337334935	CACAATGACATCGTG
chr13	100805291	100805292	chr13:100805292:A:G	rs4771375	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr13	100980806	100980807	chr13:100980807:T:C	rs2803229	T	C	T	Sox1_MA0870.1	6	1	-	3.6069369157326876	2.0683302225919697	AACAGTACCATTTTT
chr13	100981969	100981970	chr13:100981970:G:C	rs76941131	G	C	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr13	101049394	101049395	chr13:101049395:C:T	rs3751403	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr13	101049411	101049412	chr13:101049412:G:C	rs628949	G	C	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr13	101203046	101203047	chr13:101203047:T:C	rs7329882	T	C	T	Sox1_MA0870.1	4	1	-	6.59615099787368	-0.1814272562965088	GACAATGGGATTGCA
chr13	101329419	101329420	chr13:101329420:T:C	rs506746	T	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr13	101424022	101424023	chr13:101424023:G:T	rs9634525	G	T	G	Sox1_MA0870.1	12	1	+	6.85519104053387	-0.0535637387813499	TGCACTTACATTGTA
chr13	101585446	101585447	chr13:101585447:T:C	rs4772393	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr13	101649647	101649648	chr13:101649648:A:T	rs1036437	A	T	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr13	102036181	102036182	chr13:102036182:A:G	rs76726420	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr13	102487577	102487578	chr13:102487578:C:G	rs3916922	C	G	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr13	102550795	102550796	chr13:102550796:T:C	rs7983718	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr13	102664654	102664655	chr13:102664655:G:A	rs658483	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr13	102863641	102863642	chr13:102863642:C:T	rs4150324	C	T	C	Sox1_MA0870.1	14	1	-	6.025659336578808	5.8503280995117635	CACAAAGACATTGCG
chr13	103285221	103285222	chr13:103285222:C:T	rs11618565	C	T	C	Sox1_MA0870.1	6	1	-	6.025558429213534	7.564165122354252	GACAATGGCATTCTC
chr13	103395895	103395896	chr13:103395896:G:T	rs77265150	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr13	103398938	103398939	chr13:103398939:T:C	rs1360339	T	C	t	Sox1_MA0870.1	-5	0	+	0	0	.
chr13	103592830	103592831	chr13:103592831:A:G	rs2026355	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr13	103658521	103658522	chr13:103658522:A:T	rs16962926	A	T	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr13	103935261	103935262	chr13:103935262:T:C	rs1336600	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr13	104132979	104132980	chr13:104132980:G:A	rs7332734	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr13	104592362	104592363	chr13:104592363:G:A	rs9558357	G	A	A	Sox1_MA0870.1	8	1	-	5.875304503979786	1.6936949573425037	CACTCTTTCATTGTG
chr13	104733824	104733825	chr13:104733825:A:G	rs10492585	A	G	G	Sox1_MA0870.1	33	0	+	0	0	.
chr13	104796657	104796658	chr13:104796658:C:T	rs9519470	C	T	C	Sox1_MA0870.1	14	1	+	4.607267353549144	6.118276758030548	GACTATTCCATTGAC
chr13	104954355	104954356	chr13:104954356:A:G	rs115043767	A	G	a	Sox1_MA0870.1	10	1	-	11.415525313891894	4.6068282297555605	CACAATAACATTGAG
chr13	105001190	105001191	chr13:105001191:A:C	rs61966187	A	C	A	Sox1_MA0870.1	9	1	+	5.579754899069721	-1.3289998802454988	GACACTGGCATTATT
chr13	105034263	105034264	chr13:105034264:T:A	rs565215119	T	A	T	Sox1_MA0870.1	26	0	+	0	0	.
chr13	105034264	105034265	chr13:105034265:C:T	rs117861789	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr13	105201753	105201754	chr13:105201754:T:C	rs9558512	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr13	105276821	105276822	chr13:105276822:T:C	chr13:105276822:T:C	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr13	105276826	105276827	chr13:105276827:A:C	chr13:105276827:A:C	A	C	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr13	105282226	105282227	chr13:105282227:G:A	rs4485219	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr13	105395271	105395272	chr13:105395272:T:C	rs1575634	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	105755850	105755851	chr13:105755851:A:G	rs7325541	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr13	105924979	105924980	chr13:105924980:G:A	rs12877779	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr13	106128908	106128909	chr13:106128909:C:T	rs1867109	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr13	106145366	106145367	chr13:106145367:C:T	rs12868856	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr13	106415781	106415782	chr13:106415782:T:G	rs2893254	T	G	T	Sox1_MA0870.1	24	0	-	0	0	.
chr13	106415811	106415812	chr13:106415812:G:C	rs7317717	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr13	106424995	106424996	chr13:106424996:T:C	rs7988369	T	C	T	Sox1_MA0870.1	5	1	+	4.699611192137573	-2.2035535665101853	AACACTGTCTTTGCT
chr13	106587935	106587936	chr13:106587936:C:A	rs2391345	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr13	106797014	106797015	chr13:106797015:G:A	rs11069666	G	A	a	Sox1_MA0870.1	21	0	+	0	0	.
chr13	106865755	106865756	chr13:106865756:G:A	rs9520232	G	A	g	Sox1_MA0870.1	-17	0	+	0	0	.
chr13	107183148	107183149	chr13:107183149:G:T	rs2769875	G	T	.	Sox1_MA0870.1	20	0	-	0	0	.
chr13	107210809	107210810	chr13:107210810:A:G	rs77079338	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr13	107217182	107217183	chr13:107217183:T:G	rs75466087	T	G	T	Sox1_MA0870.1	17	0	+	0	0	.
chr13	107271497	107271498	chr13:107271498:C:G	rs75312685	C	G	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr13	107563491	107563492	chr13:107563492:A:G	rs551103	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr13	107586074	107586075	chr13:107586075:T:A	rs2391460	T	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr13	107927496	107927497	chr13:107927497:T:C	rs1417455	T	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr13	107941229	107941230	chr13:107941230:C:T	rs816986	C	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr13	108083198	108083199	chr13:108083199:G:T	rs16971838	G	T	G	Sox1_MA0870.1	30	0	+	0	0	.
chr13	108127106	108127107	chr13:108127107:T:G	rs7987766	T	G	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr13	108598132	108598133	chr13:108598133:G:A	rs9587626	G	A	G	Sox1_MA0870.1	12	1	+	6.807636735134688	-0.10111804418053227	ATCAATATCAGCGTT
chr13	108828207	108828208	chr13:108828208:C:A	rs432905	C	A	A	Sox1_MA0870.1	12	1	-	8.579173161333745	1.6704183820185246	AACAATAACAGAGTT
chr13	108850667	108850668	chr13:108850668:A:T	rs7330740	A	T	A	Sox1_MA0870.1	13	1	-	5.365281995065393	2.019755968476234	TTCAAAAGCATTGTG
chr13	109255744	109255745	chr13:109255745:G:A	rs72658301	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr13	109400536	109400537	chr13:109400537:G:T	rs1022875232	G	T	G	Sox1_MA0870.1	3	1	-	4.313872476602026	9.399637401640202	AACCATTTCCTTGTT
chr13	109480172	109480173	chr13:109480173:A:T	rs9515070	A	T	A	Sox1_MA0870.1	21	0	+	0	0	.
chr13	109496219	109496220	chr13:109496220:A:T	rs7330182	A	T	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr13	109700211	109700212	chr13:109700212:G:A	rs67003080	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr13	109731308	109731309	chr13:109731309:T:G	rs76447295	T	G	T	Sox1_MA0870.1	5	1	+	3.4005960705354084	-3.5025686881123512	CTCACTGCCAGTGGT
chr13	109745995	109745996	chr13:109745996:A:G	rs7317721	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr13	109773600	109773601	chr13:109773601:T:C	rs56920445	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr13	109791551	109791552	chr13:109791552:A:G	rs1369963398	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr13	109791554	109791555	chr13:109791555:G:C	rs113797238	G	C	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr13	109794488	109794489	chr13:109794489:G:A	rs9521516	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	109794491	109794492	chr13:109794492:G:A	rs1414319	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr13	109794516	109794517	chr13:109794517:G:C	rs35612086	G	C	G	Sox1_MA0870.1	14	1	+	5.175039207668364	5.389711890905064	AACCCTGACAGTGTG
chr13	109995078	109995079	chr13:109995079:A:G	rs55799126	A	G	G	Sox1_MA0870.1	31	0	-	0	0	.
chr13	110024179	110024180	chr13:110024180:A:G	rs74533944	A	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr13	110128739	110128740	chr13:110128740:A:G	rs7320138	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr13	110148359	110148360	chr13:110148360:T:C	rs77879875	T	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr13	110160036	110160037	chr13:110160037:A:T	rs655676	A	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr13	110246522	110246523	chr13:110246523:T:C	rs614282	T	C	T	Sox1_MA0870.1	10	1	+	11.429547105763369	4.620850021627035	CACAATTTCATTGGT
chr13	110297687	110297688	chr13:110297688:G:A	rs7983906	G	A	a	Sox1_MA0870.1	-12	0	-	0	0	.
chr13	110300739	110300740	chr13:110300740:G:A	rs9515182	G	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr13	110315050	110315051	chr13:110315051:A:C	chr13:110315051:A:C	A	C	A	Sox1_MA0870.1	1	1	+	4.130262021269847	0.36112163642534967	CACCCTGCCATTGAT
chr13	110409536	110409537	chr13:110409537:A:G	rs4773179	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr13	110577009	110577010	chr13:110577010:T:C	rs7985063	T	C	t	Sox1_MA0870.1	4	1	-	5.017804267921256	-1.7597739862489328	ATCAATATCAATGCT
chr13	110583381	110583382	chr13:110583382:C:T	rs9521849	C	T	C	Sox1_MA0870.1	12	1	-	4.824841563960216	-2.0839132153550044	GTGAATTGCATTGTT
chr13	110645534	110645535	chr13:110645535:C:T	rs116919485	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr13	110950475	110950476	chr13:110950476:T:C	rs1962025	T	C	.	Sox1_MA0870.1	9	1	-	7.243116632484856	0.33436185316963485	CACCATGTCATTGCT
chr13	110956478	110956479	chr13:110956479:C:T	rs9522015	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr13	111127038	111127039	chr13:111127039:A:G	rs73633230	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr13	111397843	111397844	chr13:111397844:C:T	rs9560053	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr13	111399160	111399161	chr13:111399161:A:G	rs12876300	A	G	a	Sox1_MA0870.1	4	1	+	5.185662494821646	-1.5919157593485438	TGCCATTTCATTGTT
chr13	111879459	111879460	chr13:111879460:T:C	rs9577615	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr13	111879473	111879474	chr13:111879474:G:A	rs9577616	G	A	G	Sox1_MA0870.1	0	1	+	3.3386299705061613	4.680753113312913	GACACTGGCAGTTTT
chr13	111883790	111883791	chr13:111883791:A:G	rs2318060	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr13	111948279	111948280	chr13:111948280:G:A	rs559372	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr13	111952595	111952596	chr13:111952596:A:G	rs735223	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr13	111954125	111954126	chr13:111954126:G:C	rs9549602	G	C	C	Sox1_MA0870.1	7	1	-	3.475142896130967	3.5079253958704997	CACACTGCCATTCCT
chr13	111958705	111958706	chr13:111958706:G:T	rs6577020	G	T	G	Sox1_MA0870.1	7	1	-	4.00110426656582	4.430865094101861	CTCTATGCCATTGTG
chr13	112012049	112012050	chr13:112012050:T:C	rs1277778	T	C	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr13	112183188	112183189	chr13:112183189:A:C	rs2774089	A	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr13	112188712	112188713	chr13:112188713:G:C	rs4533164	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr13	112271405	112271406	chr13:112271406:A:G	rs9549943	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr13	112391573	112391574	chr13:112391574:G:A	rs17121045	G	A	G	Sox1_MA0870.1	14	1	+	4.005237883311447	3.829906646244403	TACAATTACATGGCG
chr13	112435650	112435651	chr13:112435651:C:T	rs9549520	C	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr13	112695504	112695505	chr13:112695505:A:G	rs282584	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr13	112722726	112722727	chr13:112722727:A:C	rs562139700	A	C	A	Sox1_MA0870.1	3	1	+	4.774132701280594	-0.3116322237575808	GACAATATGAGTGGC
chr13	112751001	112751002	chr13:112751002:G:C	rs383426	G	C	C	Sox1_MA0870.1	27	0	+	0	0	.
chr13	112762662	112762663	chr13:112762663:C:T	rs393244	C	T	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr13	112762698	112762699	chr13:112762699:C:T	rs895564383	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr13	112762699	112762700	chr13:112762700:G:A	rs377971	G	A	c	Sox1_MA0870.1	31	0	+	0	0	.
chr13	112776988	112776989	chr13:112776989:G:T	rs1055842854	G	T	G	Sox1_MA0870.1	23	0	+	0	0	.
chr13	112876590	112876591	chr13:112876591:C:T	rs4907468	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr13	112946608	112946609	chr13:112946609:T:C	rs12864060	T	C	T	Sox1_MA0870.1	10	1	+	4.326087849165125	-2.4826092349712074	CTCAAGGTCATTGTT
chr13	113187397	113187398	chr13:113187398:C:T	rs192699611	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr13	113187437	113187438	chr13:113187438:C:G	rs8000290	C	G	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr13	113187441	113187442	chr13:113187442:G:A	rs1488490081	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr13	113190744	113190745	chr13:113190745:T:C	rs556990	T	C	T	Sox1_MA0870.1	6	1	-	5.311889267882867	3.773282574742149	CCCACAACCATTGTT
chr13	113197559	113197560	chr13:113197560:T:C	rs3794419	T	C	T	Sox1_MA0870.1	9	1	-	3.630191667740583	-3.2785631115746368	AACACTGACATTACC
chr13	113562439	113562440	chr13:113562440:G:C	rs7325665	G	C	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr13	113563140	113563141	chr13:113563141:C:G	rs7333085	C	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr13	113563154	113563155	chr13:113563155:G:A	rs9604157	G	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr13	113564290	113564291	chr13:113564291:C:G	rs11616321	C	G	C	Sox1_MA0870.1	25	0	+	0	0	.
chr13	113599388	113599389	chr13:113599389:C:G	rs76742574	C	G	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr13	113758623	113758624	chr13:113758624:G:T	rs80019017	G	T	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr13	113792158	113792159	chr13:113792159:A:G	rs7490106	A	G	G	Sox1_MA0870.1	4	1	+	9.841227281724617	3.0636490275544275	AACAATTACATTTTT
chr13	114044808	114044809	chr13:114044809:T:C	chr13:114044809:T:C	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr13	114079521	114079522	chr13:114079522:G:A	rs1572932	G	A	g	Sox1_MA0870.1	16	0	-	0	0	.
chr13	114143724	114143725	chr13:114143725:C:T	rs12427880	C	T	-	Sox1_MA0870.1	24	0	-	0	0	.
chr13	114163742	114163743	chr13:114163743:G:A	rs407531	G	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr13	114315677	114315678	chr13:114315678:G:A	rs139482527	G	A	G	Sox1_MA0870.1	13	1	-	4.224984529768691	6.402639827219685	TCCACTTTCAGTGCT
chr13	114315683	114315684	chr13:114315684:A:G	rs9525327	A	G	A	Sox1_MA0870.1	7	1	-	4.224984529768691	4.2368135823170645	TCCACTTTCAGTGCT
chr14	19825870	19825871	chr14:19825871:T:C	rs10135845	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr14	19902584	19902585	chr14:19902585:T:A	rs1617258	T	A	N	Sox1_MA0870.1	7	1	+	5.892868808118498	6.334458688202913	GGCAATATGATTGCT
chr14	20144305	20144306	chr14:20144306:A:G	rs10131326	A	G	.	Sox1_MA0870.1	3	1	+	4.889692697340273	-2.0108969698569514	ACCAATACCTTTGTG
chr14	20316271	20316272	chr14:20316272:G:A	rs17242578	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr14	20456274	20456275	chr14:20456275:T:C	rs3136817	T	C	T	Sox1_MA0870.1	6	1	+	5.458785244082581	1.0426349569636786	TTCACTTCCATTGCC
chr14	20489273	20489274	chr14:20489274:T:C	rs12147450	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr14	20614228	20614229	chr14:20614229:G:T	rs141194204	G	T	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr14	20625424	20625425	chr14:20625425:G:T	rs564895053	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr14	20625437	20625438	chr14:20625438:T:C	chr14:20625438:T:C	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr14	20625457	20625458	chr14:20625458:C:A	rs375619405	C	A	c	Sox1_MA0870.1	-2	0	-	0	0	.
chr14	20625472	20625473	chr14:20625473:A:C	rs762572137	A	C	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	20627406	20627407	chr14:20627407:T:C	rs11626464	T	C	T	Sox1_MA0870.1	0	1	-	7.718566866210004	6.376443723403252	AACAATTGCCTTGTG
chr14	20631182	20631183	chr14:20631183:G:A	rs191046136	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr14	20631188	20631189	chr14:20631189:C:T	rs576393735	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr14	20631191	20631192	chr14:20631192:G:A	rs373674024	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr14	20631200	20631201	chr14:20631201:G:C	rs1032545173	G	C	G	Sox1_MA0870.1	5	1	+	4.032650858853321	4.032650858853321	TACAAGACCAGTGCT
chr14	20631208	20631209	chr14:20631209:C:T	rs148281003	C	T	C	Sox1_MA0870.1	13	1	+	4.032650858853321	6.210306156304316	TACAAGACCAGTGCT
chr14	20681698	20681699	chr14:20681699:G:A	chr14:20681699:G:A	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr14	20681714	20681715	chr14:20681715:A:G	rs753895041	A	G	A	Sox1_MA0870.1	11	1	-	4.032650858853321	-0.9227441269570119	TACAAGACCAGTGCT
chr14	20681719	20681720	chr14:20681720:T:C	rs779432228	T	C	T	Sox1_MA0870.1	6	1	-	4.032650858853321	2.494044165712604	TACAAGACCAGTGCT
chr14	20722772	20722773	chr14:20722773:C:T	rs60729716	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr14	21163890	21163891	chr14:21163891:C:T	rs115663611	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr14	21197342	21197343	chr14:21197343:T:C	rs8006593	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr14	21925175	21925176	chr14:21925176:G:A	rs35954874	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr14	22065998	22065999	chr14:22065999:G:A	rs3811309	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr14	22125035	22125036	chr14:22125036:A:C	rs12431484	A	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr14	22202563	22202564	chr14:22202564:C:T	rs2075494	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr14	22244298	22244299	chr14:22244299:G:A	rs17183377	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr14	22245255	22245256	chr14:22245256:C:T	rs1023437	C	T	C	Sox1_MA0870.1	10	1	-	5.6924212329278845	1.124849077355111	GAGAATGACAGTGTT
chr14	22382838	22382839	chr14:22382839:C:A	rs17183519	C	A	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr14	22495896	22495897	chr14:22495897:A:C	rs226986	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr14	22520641	22520642	chr14:22520642:G:A	rs116872332	G	A	G	Sox1_MA0870.1	13	1	-	2.9654743890704083	5.143129686521403	CACACTTACATAGCC
chr14	22547754	22547755	chr14:22547755:A:C	rs61741618	A	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr14	22569505	22569506	chr14:22569506:T:A	rs5742839	T	A	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr14	22710755	22710756	chr14:22710756:C:G	rs6572676	C	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr14	22776464	22776465	chr14:22776465:C:A	rs17277865	C	A	.	Sox1_MA0870.1	-11	0	-	0	0	.
chr14	22801890	22801891	chr14:22801891:A:G	rs2331772	A	G	G	Sox1_MA0870.1	4	1	+	8.522507390006961	1.7449291358367751	GACAATGACAGTGCA
chr14	22843653	22843654	chr14:22843654:C:G	rs2236304	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	22866534	22866535	chr14:22866535:A:G	rs17277907	A	G	A	Sox1_MA0870.1	13	1	-	4.4808450307419	2.3031897332909055	CACACTTTCATTCTG
chr14	22930702	22930703	chr14:22930703:G:A	rs1387030770	G	A	G	Sox1_MA0870.1	4	1	-	4.8771083781820765	0.05634305863710454	GGCACTTGCATTGCA
chr14	23143279	23143280	chr14:23143280:C:G	rs2273394	C	G	G	Sox1_MA0870.1	29	0	-	0	0	.
chr14	23143297	23143298	chr14:23143298:G:A	rs45589331	G	A	G	Sox1_MA0870.1	11	1	-	7.337755707534807	12.29315069334514	TACAATGTCATCGTC
chr14	23358371	23358372	chr14:23358372:A:G	rs116490711	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr14	23478292	23478293	chr14:23478293:T:C	rs7158784	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr14	23487669	23487670	chr14:23487670:A:C	rs79125257	A	C	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	23663578	23663579	chr14:23663579:A:T	rs221706	A	T	A	Sox1_MA0870.1	24	0	-	0	0	.
chr14	23663614	23663615	chr14:23663615:A:G	rs10438137	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr14	23987766	23987767	chr14:23987767:G:A	rs56171184	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	24000928	24000929	chr14:24000929:C:T	rs1811890	C	T	c	Sox1_MA0870.1	31	0	+	0	0	.
chr14	24196347	24196348	chr14:24196348:C:T	chr14:24196348:C:T	C	T	C	Sox1_MA0870.1	12	1	-	4.005578913302584	-2.9031758660126363	AACAATAACCATGTT
chr14	24337695	24337696	chr14:24337696:G:A	rs34106261	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr14	24438345	24438346	chr14:24438346:C:T	rs17103743	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr14	24775682	24775683	chr14:24775683:A:C	rs72681083	A	C	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr14	24894759	24894760	chr14:24894760:T:C	rs1241597	T	C	T	Sox1_MA0870.1	5	1	+	7.156213404822672	0.2530486461749132	AACTCTTGCATTGTG
chr14	24965510	24965511	chr14:24965511:T:C	rs61978830	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr14	25041877	25041878	chr14:25041878:G:C	rs17257773	G	C	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr14	25756090	25756091	chr14:25756091:A:G	rs1951046	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	26523513	26523514	chr14:26523514:C:T	rs73601914	C	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr14	26592935	26592936	chr14:26592936:A:G	rs17583737	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr14	26595699	26595700	chr14:26595700:A:G	rs17111434	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr14	26793098	26793099	chr14:26793099:C:T	rs1951083	C	T	C	Sox1_MA0870.1	12	1	-	3.8474561850128293	-3.061298594302391	CACACTGACAGAGTT
chr14	26841956	26841957	chr14:26841957:C:G	rs1956818	C	G	C	Sox1_MA0870.1	2	1	+	4.0877034347214725	-2.8210513445937475	ATCATTTCCATTGCT
chr14	26947487	26947488	chr14:26947488:T:G	rs73609763	T	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr14	26967147	26967148	chr14:26967148:G:C	rs548866406	G	C	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr14	26967169	26967170	chr14:26967170:C:G	chr14:26967170:C:G	C	G	C	Sox1_MA0870.1	2	1	+	4.226501086794264	-2.682253692520955	GTCAATGCCATTCTT
chr14	26996133	26996134	chr14:26996134:A:G	rs12432293	A	G	A	Sox1_MA0870.1	9	1	+	7.120582804789086	0.21182802547386448	AACAAAACCATTGGC
chr14	27075316	27075317	chr14:27075317:T:C	rs4332679	T	C	T	Sox1_MA0870.1	4	1	-	3.7725432637926586	-3.005034990377529	AACAAAAGCACTGTG
chr14	27092266	27092267	chr14:27092267:C:G	rs79087392	C	G	C	Sox1_MA0870.1	6	1	-	5.197000682062057	1.3464083723695723	AATAATGACATTGCA
chr14	27185538	27185539	chr14:27185539:G:A	rs1500436	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr14	27248832	27248833	chr14:27248833:G:C	rs61973590	G	C	G	Sox1_MA0870.1	2	1	-	4.1637410379854884	-2.7450137413297324	CACTATAACACTGTT
chr14	27784278	27784279	chr14:27784279:A:T	rs61974426	A	T	a	Sox1_MA0870.1	5	1	-	4.352427839098194	-0.6667021742123398	CTCACTCACATTGTC
chr14	27962566	27962567	chr14:27962567:T:C	rs80197549	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr14	28129745	28129746	chr14:28129746:C:G	rs1191379	C	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr14	28538953	28538954	chr14:28538954:C:T	rs176340	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr14	28693625	28693626	chr14:28693626:A:G	rs176264	A	G	A	Sox1_MA0870.1	3	1	+	6.522997908399755	-0.3775917587974713	GACAATACTATTGAA
chr14	28783552	28783553	chr14:28783553:A:G	rs952829086	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr14	29030484	29030485	chr14:29030485:C:G	rs17114423	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr14	29531475	29531476	chr14:29531476:A:G	rs1191548	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr14	29839936	29839937	chr14:29839937:G:A	rs113829233	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr14	29851734	29851735	chr14:29851735:T:G	chr14:29851735:T:G	T	G	T	Sox1_MA0870.1	20	0	+	0	0	.
chr14	30228343	30228344	chr14:30228344:A:T	rs116242849	A	T	A	Sox1_MA0870.1	21	0	+	0	0	.
chr14	30996302	30996303	chr14:30996303:A:C	chr14:30996303:A:C	A	C	A	Sox1_MA0870.1	34	0	-	0	0	.
chr14	30996308	30996309	chr14:30996309:C:G	chr14:30996309:C:G	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr14	31090631	31090632	chr14:31090632:A:T	rs114267319	A	T	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr14	31109555	31109556	chr14:31109556:C:T	rs17097735	C	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr14	31284299	31284300	chr14:31284300:T:C	rs114379784	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr14	31413112	31413113	chr14:31413113:T:C	rs2378862	T	C	t	Sox1_MA0870.1	11	1	+	5.190310979670964	0.23491599386062956	AACACATTCAGTGTA
chr14	31458318	31458319	chr14:31458319:G:A	rs145449343	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr14	31510225	31510226	chr14:31510226:A:G	rs28369136	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr14	32193311	32193312	chr14:32193312:T:G	rs17387785	T	G	T	Sox1_MA0870.1	20	0	+	0	0	.
chr14	32415226	32415227	chr14:32415227:G:A	rs1885131	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr14	32415230	32415231	chr14:32415231:G:C	rs2383300	G	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	32484739	32484740	chr14:32484740:G:A	rs78940442	G	A	-	Sox1_MA0870.1	27	0	-	0	0	.
chr14	32964696	32964697	chr14:32964697:G:A	rs2748836	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr14	33150859	33150860	chr14:33150860:C:T	rs17100249	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr14	33255266	33255267	chr14:33255267:A:C	chr14:33255267:A:C	A	C	A	Sox1_MA0870.1	1	1	+	4.532286362147966	0.7631459773034673	TACCCTGCCAGTGTT
chr14	33333828	33333829	chr14:33333829:C:G	rs17567572	C	G	C	Sox1_MA0870.1	21	0	+	0	0	.
chr14	33510483	33510484	chr14:33510484:G:A	rs111362667	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr14	33510512	33510513	chr14:33510513:C:G	rs1885261	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr14	33566800	33566801	chr14:33566801:A:G	rs12432766	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr14	33686476	33686477	chr14:33686477:A:G	rs12587926	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr14	33686491	33686492	chr14:33686492:A:G	rs944088	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr14	33768746	33768747	chr14:33768747:T:A	rs36059107	T	A	T	Sox1_MA0870.1	29	0	-	0	0	.
chr14	33839875	33839876	chr14:33839876:C:T	rs116526934	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr14	33943329	33943330	chr14:33943330:G:A	rs76833641	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr14	34098466	34098467	chr14:34098467:T:C	rs8009878	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr14	35197254	35197255	chr14:35197255:C:G	rs4981273	C	G	G	Sox1_MA0870.1	27	0	-	0	0	.
chr14	35855823	35855824	chr14:35855824:G:T	rs8014810	G	T	t	Sox1_MA0870.1	12	1	+	4.4320385323388445	-2.476716246976375	TACTCTGTCATTGTA
chr14	35875609	35875610	chr14:35875610:A:G	rs11625109	A	G	A	Sox1_MA0870.1	9	1	+	7.536567833694937	0.6278130543797166	GAAAATGGCATTGTT
chr14	35999524	35999525	chr14:35999525:T:C	rs79904024	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr14	36170862	36170863	chr14:36170863:C:T	rs1183904	C	T	T	Sox1_MA0870.1	12	1	-	3.607983091049387	-3.300771688265833	CACACTGGCAATGCT
chr14	36224078	36224079	chr14:36224079:G:A	rs1755776	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr14	36318939	36318940	chr14:36318940:G:A	rs75495968	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr14	36389839	36389840	chr14:36389840:T:C	rs3909618	T	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr14	36626454	36626455	chr14:36626455:A:G	rs76188354	A	G	A	Sox1_MA0870.1	10	1	-	6.288419458233661	-0.5202776259026735	AACACCAGCATTGCT
chr14	36673763	36673764	chr14:36673764:C:A	rs17176643	C	A	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr14	36986558	36986559	chr14:36986559:C:A	rs75516407	C	A	C	Sox1_MA0870.1	7	1	+	5.829029127024141	6.258789954560184	AACACTTCCAATGTG
chr14	36986577	36986578	chr14:36986578:G:A	rs146190565	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr14	37048122	37048123	chr14:37048123:T:C	rs75700775	T	C	T	Sox1_MA0870.1	1	1	-	6.907400398330778	2.8091097429376375	TACACAAACATTGTA
chr14	37131461	37131462	chr14:37131462:T:C	rs7147904	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	37202466	37202467	chr14:37202467:A:G	rs6571796	A	G	A	Sox1_MA0870.1	5	1	-	6.482269517655023	-0.4208952409927357	CACAATTGCTTTGTG
chr14	37230805	37230806	chr14:37230806:T:C	rs116741757	T	C	T	Sox1_MA0870.1	4	1	-	5.493841042162449	-1.2837372120077384	CACAATATCATTAGT
chr14	37466585	37466586	chr14:37466586:G:A	rs10134469	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr14	38693839	38693840	chr14:38693840:C:T	rs76675929	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr14	38723437	38723438	chr14:38723438:G:A	rs59566391	G	A	G	Sox1_MA0870.1	2	1	-	10.300751428412786	3.3919966490975653	AACAATGACAGTGGT
chr14	39090839	39090840	chr14:39090840:T:A	rs10134166	T	A	T	Sox1_MA0870.1	1	1	+	5.568624229601019	8.845908476762158	ATCAATGCCCTTGTT
chr14	39204143	39204144	chr14:39204144:T:C	rs72673365	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr14	39390957	39390958	chr14:39390958:A:G	rs73283442	A	G	A	Sox1_MA0870.1	1	1	+	11.60246151047067	7.504170855077529	TACAATACCAGTGTC
chr14	39390984	39390985	chr14:39390985:C:T	rs34173090	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr14	39631855	39631856	chr14:39631856:A:G	rs1956151	A	G	A	Sox1_MA0870.1	0	1	-	5.10509889883612	5.8074756559836	TACAATAAGTTTGTT
chr14	39768527	39768528	chr14:39768528:T:G	rs117585404	T	G	T	Sox1_MA0870.1	3	1	-	5.105328729768736	0.019563804730560852	AAAACTAACAGTGTC
chr14	40318295	40318296	chr14:40318296:G:A	rs1546937	G	A	A	Sox1_MA0870.1	4	1	-	5.58377497125527	0.7630096517102984	CTCACTGTCATTGCC
chr14	40870602	40870603	chr14:40870603:A:G	rs10150841	A	G	G	Sox1_MA0870.1	11	1	+	4.631291021319403	4.631291021319403	TTCAATTACATAGTT
chr14	40870613	40870614	chr14:40870614:T:G	rs12897166	T	G	t	Sox1_MA0870.1	22	0	+	0	0	.
chr14	41289104	41289105	chr14:41289105:C:A	rs1652927	C	A	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr14	41872791	41872792	chr14:41872792:A:G	rs75048249	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr14	42365202	42365203	chr14:42365203:T:C	rs11620983	T	C	C	Sox1_MA0870.1	10	1	+	4.139434883636044	-2.6692622005002886	TCCAATTACATGGTT
chr14	42569263	42569264	chr14:42569264:G:C	rs12898123	G	C	G	Sox1_MA0870.1	2	1	-	5.387138855691093	-1.5216159236241271	ATCAAGACCATTGTG
chr14	42805067	42805068	chr14:42805068:G:A	rs72685940	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr14	42944592	42944593	chr14:42944593:A:G	rs12435931	A	G	C	Sox1_MA0870.1	31	0	+	0	0	.
chr14	43399708	43399709	chr14:43399709:G:A	rs7145059	G	A	A	Sox1_MA0870.1	2	1	-	7.498624076855054	0.589869297539833	AACAATTTCCTTGTA
chr14	43850419	43850420	chr14:43850420:A:G	rs1951549	A	G	G	Sox1_MA0870.1	10	1	-	4.866117707087585	-1.9425793770487476	AAAAATAAGATTGCT
chr14	43872404	43872405	chr14:43872405:G:T	rs78680885	G	T	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr14	44654866	44654867	chr14:44654867:A:G	rs117115682	A	G	A	Sox1_MA0870.1	3	1	+	8.258188190789204	1.3575985235919772	CGCAATATCATTGCC
chr14	44702141	44702142	chr14:44702142:C:A	rs17551760	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr14	45135648	45135649	chr14:45135649:T:C	rs149907045	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr14	45177455	45177456	chr14:45177456:G:C	rs139439956	G	C	G	Sox1_MA0870.1	2	1	-	5.248106565996308	-1.6606482133189129	GACCATGCCATTGCA
chr14	46057943	46057944	chr14:46057944:G:A	rs17116885	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr14	46490644	46490645	chr14:46490645:T:C	rs28636061	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr14	46490656	46490657	chr14:46490657:T:G	rs2642106	T	G	G	Sox1_MA0870.1	4	1	-	9.37961808299595	7.422805148370733	GACAATTTCAGTGAT
chr14	46506310	46506311	chr14:46506311:C:G	rs76326979	C	G	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr14	46747262	46747263	chr14:46747263:T:C	rs17744004	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr14	46914111	46914112	chr14:46914112:A:G	rs3007120	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr14	47266815	47266816	chr14:47266816:A:G	rs17575074	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr14	47442152	47442153	chr14:47442153:G:A	chr14:47442153:G:A	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr14	47481057	47481058	chr14:47481058:C:T	rs12436176	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr14	47584825	47584826	chr14:47584826:C:T	rs17760091	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr14	47660551	47660552	chr14:47660552:T:C	rs1956317	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr14	47714236	47714237	chr14:47714237:T:C	chr14:47714237:T:C	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr14	47996912	47996913	chr14:47996913:G:A	rs810768	G	A	A	Sox1_MA0870.1	9	1	+	3.8691728594891166	10.777927638804337	TACACTGACGTTGTC
chr14	48008904	48008905	chr14:48008905:G:A	rs72679641	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr14	48268145	48268146	chr14:48268146:T:C	rs12435020	T	C	C	Sox1_MA0870.1	3	1	-	3.9955195149722953	-2.9050701522249343	ACTAATGACATTGTC
chr14	48274481	48274482	chr14:48274482:A:C	rs10133166	A	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr14	48289213	48289214	chr14:48289214:C:G	rs1620753	C	G	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr14	48289221	48289222	chr14:48289222:A:G	rs1769514	A	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr14	49852419	49852420	chr14:49852420:G:A	rs76942979	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr14	49988368	49988369	chr14:49988369:T:C	rs2355654	T	C	T	Sox1_MA0870.1	9	1	-	7.455318233369326	0.5465634540541048	CACAATAGCATTCTG
chr14	50110591	50110592	chr14:50110592:A:G	rs1955929	A	G	G	Sox1_MA0870.1	5	1	-	6.713519665267584	-0.1896450933801752	CTCACTAGCAGTGTA
chr14	50160666	50160667	chr14:50160667:G:A	rs7153547	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr14	50732898	50732899	chr14:50732899:A:G	rs2984268	A	G	A	Sox1_MA0870.1	9	1	+	5.803070164966552	-1.1056846143486676	GCCAATAACACTGTT
chr14	51078676	51078677	chr14:51078677:T:G	rs74244447	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	51131891	51131892	chr14:51131892:A:G	rs11851960	A	G	A	Sox1_MA0870.1	14	1	-	4.309817696329829	2.7988082918484247	GCCACTAGGATTGCT
chr14	51180921	51180922	chr14:51180922:T:A	rs4567626	T	A	T	Sox1_MA0870.1	27	0	-	0	0	.
chr14	51368402	51368403	chr14:51368403:G:C	rs4898689	G	C	G	Sox1_MA0870.1	8	1	+	4.8031431885264535	8.57364618142679	AACAAAATGATTGCC
chr14	51444499	51444500	chr14:51444500:A:G	rs7146882	A	G	A	Sox1_MA0870.1	9	1	+	4.400501552996036	-2.508253226319184	AACGAATCCATTGTT
chr14	51517943	51517944	chr14:51517944:A:C	chr14:51517944:A:C	A	C	A	Sox1_MA0870.1	19	0	-	0	0	.
chr14	51526018	51526019	chr14:51526019:T:G	rs8022389	T	G	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr14	51638333	51638334	chr14:51638334:G:A	rs138828261	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr14	51938504	51938505	chr14:51938505:T:G	rs7154419	T	G	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr14	51944224	51944225	chr14:51944225:A:G	rs8014732	A	G	G	Sox1_MA0870.1	6	1	-	4.824841563960214	0.4086912768413139	GTCAATTGCATTTTT
chr14	51944242	51944243	chr14:51944243:A:G	rs8014746	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr14	52078283	52078284	chr14:52078284:C:G	rs76073421	C	G	C	Sox1_MA0870.1	26	0	-	0	0	.
chr14	52078300	52078301	chr14:52078301:T:C	rs10150755	T	C	T	Sox1_MA0870.1	9	1	-	4.732511323353371	-2.176243455961849	TACAATAGCAGAGTC
chr14	52126236	52126237	chr14:52126237:A:G	rs190237882	A	G	A	Sox1_MA0870.1	4	1	+	3.9031932405696272	-2.8743850136005604	AACTATTCCATAGTT
chr14	52287186	52287187	chr14:52287187:T:C	rs17125289	T	C	T	Sox1_MA0870.1	3	1	+	3.8614316933997506	4.289962074438911	AACTATGACACTGTT
chr14	52299938	52299939	chr14:52299939:A:G	rs28547950	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr14	52378069	52378070	chr14:52378070:T:C	rs139993619	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr14	52392176	52392177	chr14:52392177:G:A	rs117002094	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr14	52910821	52910822	chr14:52910822:T:C	rs9888615	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr14	53054929	53054930	chr14:53054930:G:A	rs12880404	G	A	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr14	53589908	53589909	chr14:53589909:G:A	rs1001161	G	A	G	Sox1_MA0870.1	4	1	-	3.542497092022578	-1.2782682275223944	CACACTAACCTTGCA
chr14	53634884	53634885	chr14:53634885:C:A	rs79449085	C	A	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr14	53838641	53838642	chr14:53838642:A:G	rs2210167	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr14	54084785	54084786	chr14:54084786:T:A	rs11621397	T	A	T	Sox1_MA0870.1	5	1	+	4.332326881046038	-0.6868031322644962	CTTAATGCCATTGTT
chr14	54347331	54347332	chr14:54347332:G:A	rs117908503	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr14	54435569	54435570	chr14:54435570:C:T	rs79144186	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr14	54441501	54441502	chr14:54441502:T:G	rs192720261	T	G	T	Sox1_MA0870.1	33	0	-	0	0	.
chr14	54441554	54441555	chr14:54441555:T:A	rs184540992	T	A	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr14	54640865	54640866	chr14:54640866:C:A	rs116866540	C	A	C	Sox1_MA0870.1	30	0	+	0	0	.
chr14	54691173	54691174	chr14:54691174:C:T	rs7145140	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr14	55028480	55028481	chr14:55028481:A:T	rs1187876	A	T	A	Sox1_MA0870.1	1	1	+	12.127883765551246	8.850599518390105	AACAATATCATTGGC
chr14	55152592	55152593	chr14:55152593:A:G	rs15870	A	G	.	Sox1_MA0870.1	-9	0	-	0	0	.
chr14	55454999	55455000	chr14:55455000:G:A	rs1223869018	G	A	G	Sox1_MA0870.1	12	1	+	3.903986348822693	-3.0047684304925277	AACACTGACATCGGG
chr14	55848192	55848193	chr14:55848193:T:G	rs6573066	T	G	T	Sox1_MA0870.1	25	0	-	0	0	.
chr14	56005988	56005989	chr14:56005989:C:A	rs2086424	C	A	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr14	56005996	56005997	chr14:56005997:T:C	rs922654	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr14	56127068	56127069	chr14:56127069:A:G	rs17761563	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr14	56211289	56211290	chr14:56211290:A:G	rs17832597	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr14	56213583	56213584	chr14:56213584:A:G	rs146456915	A	G	A	Sox1_MA0870.1	3	1	+	6.2876774591933335	-0.6129122080038927	GACAGTTTCATTGTA
chr14	56273835	56273836	chr14:56273836:C:A	rs3783682	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr14	56428164	56428165	chr14:56428165:G:A	rs1189150	G	A	A	Sox1_MA0870.1	23	0	-	0	0	.
chr14	56585792	56585793	chr14:56585793:G:T	rs3737171	G	T	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr14	56874566	56874567	chr14:56874567:T:A	rs8004898	T	A	T	Sox1_MA0870.1	3	1	-	6.74304479074628	1.2287494846689435	CTCAATAACATCGTC
chr14	56886007	56886008	chr14:56886008:G:C	rs850253	G	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr14	57022867	57022868	chr14:57022868:G:A	rs7143862	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr14	57119978	57119979	chr14:57119979:C:T	rs2154209	C	T	T	Sox1_MA0870.1	12	1	-	8.057514258833448	1.1487594795182283	GACAATTTCCTTGTT
chr14	57512239	57512240	chr14:57512240:C:T	rs398723	C	T	T	Sox1_MA0870.1	8	1	+	6.495701255135456	2.3140917084981747	AAAAATTACATTGAT
chr14	57559554	57559555	chr14:57559555:A:G	rs112509492	A	G	A	Sox1_MA0870.1	0	1	+	4.4905801686947395	3.1484570258879874	ATCTCTTACATTGTC
chr14	57849201	57849202	chr14:57849202:C:T	rs2010213	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr14	57945252	57945253	chr14:57945253:G:A	rs7145496	G	A	A	Sox1_MA0870.1	7	1	-	8.553784467156877	8.541955414608504	CACAAATCCATTGTC
chr14	58047155	58047156	chr14:58047156:C:T	rs8013464	C	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr14	58086180	58086181	chr14:58086181:T:C	rs12433262	T	C	C	Sox1_MA0870.1	33	0	-	0	0	.
chr14	58300141	58300142	chr14:58300142:T:C	chr14:58300142:T:C	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr14	58427966	58427967	chr14:58427967:G:A	rs187063580	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr14	58731774	58731775	chr14:58731775:A:C	rs2163616	A	C	A	Sox1_MA0870.1	26	0	-	0	0	.
chr14	59015921	59015922	chr14:59015922:T:G	rs7146482	T	G	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr14	59328790	59328791	chr14:59328791:C:G	rs72726383	C	G	C	Sox1_MA0870.1	12	1	-	5.579625688951651	-1.3291290903635695	CCCACTGACATTGGT
chr14	59433396	59433397	chr14:59433397:G:A	rs17255752	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr14	59537918	59537919	chr14:59537919:A:G	rs1956358	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	59570252	59570253	chr14:59570253:G:A	chr14:59570253:G:A	G	A	G	Sox1_MA0870.1	8	1	-	3.572965333452359	-0.6086442131849229	GACTCTTGCAGTGTG
chr14	59673120	59673121	chr14:59673121:A:G	rs7160227	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr14	59679629	59679630	chr14:59679630:C:T	rs1952042	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr14	59870203	59870204	chr14:59870204:G:A	rs2145797	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr14	60328402	60328403	chr14:60328403:A:G	rs4901978	A	G	G	Sox1_MA0870.1	6	1	+	6.194868607471024	4.6562619143303055	GTCAATAACATTTTT
chr14	60331437	60331438	chr14:60331438:A:G	rs116608298	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr14	60331486	60331487	chr14:60331487:G:A	rs74916535	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	60735994	60735995	chr14:60735995:G:C	rs79994010	G	C	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr14	60867941	60867942	chr14:60867942:G:A	rs1887741	G	A	A	Sox1_MA0870.1	13	1	-	4.090693523307468	6.268348820758463	CACAATTTCATGGCA
chr14	61178870	61178871	chr14:61178871:A:G	rs140815885	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr14	61262407	61262408	chr14:61262408:C:T	rs74529601	C	T	T	Sox1_MA0870.1	13	1	+	3.890003454761879	6.067658752212873	CTCAAAAGCATTGCG
chr14	61350814	61350815	chr14:61350815:A:G	rs2181987	A	G	A	Sox1_MA0870.1	4	1	+	3.6311829665884443	-3.1463952875817434	CCCAATAACTTTGCT
chr14	61418193	61418194	chr14:61418194:T:C	rs77284558	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr14	61488385	61488386	chr14:61488386:G:A	rs72712345	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr14	61502110	61502111	chr14:61502111:C:T	rs11624895	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr14	61558376	61558377	chr14:61558377:G:C	rs78462949	G	C	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	61628327	61628328	chr14:61628328:T:C	rs145347170	T	C	T	Sox1_MA0870.1	7	1	-	7.532914184540525	7.135935856744018	AACACATACAGTGTT
chr14	61899816	61899817	chr14:61899817:A:G	rs11158366	A	G	A	Sox1_MA0870.1	10	1	-	6.956087391627836	0.14739030749150206	TACCATAGCATTGAT
chr14	61909985	61909986	chr14:61909986:T:C	rs217634	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr14	62272129	62272130	chr14:62272130:A:G	rs1174545614	A	G	A	Sox1_MA0870.1	10	1	-	7.505939673255496	0.6972425891191634	AACACTAATATTGCA
chr14	63042454	63042455	chr14:63042455:G:A	rs1956673	G	A	A	Sox1_MA0870.1	7	1	-	6.934831659719011	6.923002607170638	TACAATACCATTTTC
chr14	63130493	63130494	chr14:63130494:G:A	rs115448386	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr14	63540983	63540984	chr14:63540984:A:G	rs10136489	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr14	63875443	63875444	chr14:63875444:A:G	rs148362867	A	G	A	Sox1_MA0870.1	10	1	+	4.82150091299226	9.389073068565033	CACAATAACAATGAC
chr14	64146754	64146755	chr14:64146755:C:T	rs7144688	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr14	64880930	64880931	chr14:64880931:C:T	rs61012404	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr14	64986596	64986597	chr14:64986597:C:T	rs1347955386	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr14	65107599	65107600	chr14:65107600:T:C	rs945013	T	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr14	65145329	65145330	chr14:65145330:C:T	rs4902368	C	T	T	Sox1_MA0870.1	24	0	-	0	0	.
chr14	65173715	65173716	chr14:65173716:C:T	rs11622328	C	T	t	Sox1_MA0870.1	-7	0	-	0	0	.
chr14	65412190	65412191	chr14:65412191:C:T	rs1953417	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr14	65772738	65772739	chr14:65772739:C:T	rs1075566	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr14	66249440	66249441	chr14:66249441:G:C	rs8003342	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr14	66288518	66288519	chr14:66288519:T:C	rs8005105	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	66510855	66510856	chr14:66510856:A:G	rs8005383	A	G	A	Sox1_MA0870.1	9	1	+	6.088917091513386	-0.819837687801835	AACATTAACATTGAC
chr14	66611493	66611494	chr14:66611494:T:C	rs8010110	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr14	66649011	66649012	chr14:66649012:G:A	rs11158642	G	A	A	Sox1_MA0870.1	4	1	-	4.305513793674856	-0.5152515258701145	CATACTTTCATTGTA
chr14	66824435	66824436	chr14:66824436:A:G	rs3784074	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr14	66824467	66824468	chr14:66824468:T:C	rs3784075	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr14	67010929	67010930	chr14:67010930:A:G	rs1955606	A	G	G	Sox1_MA0870.1	7	1	+	9.406845829443231	9.009867501646724	AACATTGACATTGTT
chr14	67394018	67394019	chr14:67394019:A:T	rs10139953	A	T	T	Sox1_MA0870.1	5	1	-	4.317208978336856	-0.7019210349736769	GACAATTCCAGTTTC
chr14	67440399	67440400	chr14:67440400:T:C	rs755782	T	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr14	67556814	67556815	chr14:67556815:A:G	rs1022612823	A	G	A	Sox1_MA0870.1	4	1	+	3.826751852144453	-2.950826402025735	ATCAATGACATGGCT
chr14	67977744	67977745	chr14:67977745:A:G	rs12433779	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr14	68144530	68144531	chr14:68144531:T:C	rs2767363	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr14	68146763	68146764	chr14:68146764:G:A	rs2588828	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr14	68211132	68211133	chr14:68211133:G:C	rs143890834	G	C	G	Sox1_MA0870.1	7	1	+	6.734222988377471	6.701440488637939	AACAAGAGCATTGCC
chr14	68231557	68231558	chr14:68231558:C:G	rs1449354062	C	G	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr14	68376887	68376888	chr14:68376888:G:C	rs2025009	G	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr14	68377471	68377472	chr14:68377472:A:T	rs12432583	A	T	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr14	68461227	68461228	chr14:68461228:G:A	rs11846360	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr14	68468680	68468681	chr14:68468681:G:A	rs2074564	G	A	G	Sox1_MA0870.1	6	1	+	5.426148870666199	6.964755563806917	CACAATGTCATGGCT
chr14	68471646	68471647	chr14:68471647:A:G	rs2525507	A	G	A	Sox1_MA0870.1	10	1	-	5.566784331030236	-1.2419127531060987	AACAATAGCATGGAC
chr14	68627162	68627163	chr14:68627163:C:T	rs17106059	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr14	68656195	68656196	chr14:68656196:C:T	chr14:68656196:C:T	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr14	68670163	68670164	chr14:68670164:C:A	rs17106125	C	A	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	68680106	68680107	chr14:68680107:A:T	rs56273152	A	T	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr14	68694456	68694457	chr14:68694457:T:C	rs17106154	T	C	T	Sox1_MA0870.1	4	1	-	5.82630470892005	-0.9512735452501379	GTCAATTGTATTGTG
chr14	68717052	68717053	chr14:68717053:T:A	rs17106170	T	A	T	Sox1_MA0870.1	17	0	-	0	0	.
chr14	68717507	68717508	chr14:68717508:A:G	rs381336	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr14	68772211	68772212	chr14:68772212:A:G	rs191962073	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr14	69062778	69062779	chr14:69062779:C:G	rs28527397	C	G	C	Sox1_MA0870.1	28	0	+	0	0	.
chr14	69355895	69355896	chr14:69355896:G:A	rs897329	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr14	69593254	69593255	chr14:69593255:C:T	rs139074889	C	T	c	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	69773385	69773386	chr14:69773386:C:T	rs8013586	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr14	69773405	69773406	chr14:69773406:C:G	rs8013598	C	G	G	Sox1_MA0870.1	15	0	+	0	0	.
chr14	69781628	69781629	chr14:69781629:T:C	rs113594012	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr14	69781640	69781641	chr14:69781641:G:A	rs17556915	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr14	70092990	70092991	chr14:70092991:A:T	rs1544870	A	T	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr14	70138108	70138109	chr14:70138109:A:C	rs61978162	A	C	C	Sox1_MA0870.1	7	1	+	8.849175547084513	8.419414719548474	CACACTGACAGTGTA
chr14	70399602	70399603	chr14:70399603:A:G	rs2332372	A	G	a	Sox1_MA0870.1	27	0	+	0	0	.
chr14	70422769	70422770	chr14:70422770:C:T	rs146316126	C	T	C	Sox1_MA0870.1	2	1	+	7.536374255821089	0.6276194765058687	CTCACTGACATTGCT
chr14	70683703	70683704	chr14:70683704:G:A	rs4899366	G	A	A	Sox1_MA0870.1	24	0	-	0	0	.
chr14	70709300	70709301	chr14:70709301:C:T	rs28550295	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr14	70785679	70785680	chr14:70785680:T:C	rs57843652	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr14	70785693	70785694	chr14:70785694:T:C	rs143859497	T	C	T	Sox1_MA0870.1	9	1	-	4.126696040117329	-2.7820587391978924	ACCATTGACATTGTC
chr14	71002702	71002703	chr14:71002703:T:C	rs12433409	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr14	71727683	71727684	chr14:71727684:C:T	rs17100926	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr14	71780404	71780405	chr14:71780405:G:T	rs7152273	G	T	G	Sox1_MA0870.1	14	1	-	3.37363368282434	2.983629762520597	AACAAAGGCAGTGGC
chr14	72188193	72188194	chr14:72188194:A:G	rs78873191	A	G	A	Sox1_MA0870.1	10	1	-	5.0066984378431	-1.8019986462932334	TTCACTAACATTGGA
chr14	72254854	72254855	chr14:72254855:T:C	rs2239262	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr14	72472786	72472787	chr14:72472787:C:A	rs10131300	C	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	72791648	72791649	chr14:72791649:A:G	rs9635259	A	G	A	Sox1_MA0870.1	4	1	+	5.493841042162449	-1.2837372120077384	CACAATATCATTTGT
chr14	72825469	72825470	chr14:72825470:A:G	rs4903068	A	G	G	Sox1_MA0870.1	7	1	-	8.571082171773421	8.582911224321794	AACAATTTGAGTGTG
chr14	73023576	73023577	chr14:73023577:T:G	rs58178546	T	G	T	Sox1_MA0870.1	9	1	-	6.920565750655202	0.011810971339982212	CACACTAACAGTGGG
chr14	73040677	73040678	chr14:73040678:C:A	rs7140377	C	A	C	Sox1_MA0870.1	27	0	-	0	0	.
chr14	73040684	73040685	chr14:73040685:C:A	rs12588579	C	A	C	Sox1_MA0870.1	20	0	-	0	0	.
chr14	73833789	73833790	chr14:73833790:A:G	rs903373318	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr14	74062729	74062730	chr14:74062730:A:G	rs75646425	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr14	74081544	74081545	chr14:74081545:A:G	rs4646859	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr14	74254657	74254658	chr14:74254658:T:C	rs10150826	T	C	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	74475974	74475975	chr14:74475975:T:G	rs77044883	T	G	T	Sox1_MA0870.1	11	1	+	3.8254825188283355	-3.077250168028497	CACATTAACAGTGGT
chr14	75982098	75982099	chr14:75982099:G:A	rs117462711	G	A	G	Sox1_MA0870.1	11	1	-	4.264375449055512	9.219770434865845	AACATTAACATCGTG
chr14	76160359	76160360	chr14:76160360:T:C	rs2543383	T	C	t	Sox1_MA0870.1	20	0	+	0	0	.
chr14	76185320	76185321	chr14:76185321:G:A	rs11848148	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr14	76320867	76320868	chr14:76320868:C:G	rs12880948	C	G	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr14	76385404	76385405	chr14:76385405:T:C	rs17104397	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr14	76473411	76473412	chr14:76473412:C:G	rs36092586	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	76651623	76651624	chr14:76651624:A:G	rs10141355	A	G	G	Sox1_MA0870.1	11	1	-	3.5664692414257813	-1.3889257443845522	GACTAGAGCATTGTT
chr14	76694961	76694962	chr14:76694962:T:C	rs4899604	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr14	76720943	76720944	chr14:76720944:G:T	rs10137647	G	T	T	Sox1_MA0870.1	12	1	+	5.592012715185205	-1.3167420641300152	AACACCTGCATTGTA
chr14	76811091	76811092	chr14:76811092:A:T	chr14:76811092:A:T	A	T	A	Sox1_MA0870.1	23	0	-	0	0	.
chr14	76910529	76910530	chr14:76910530:G:A	rs72627179	G	A	c	Sox1_MA0870.1	0	1	+	5.558865249884832	6.900988392691586	GCCTATGACATTGTT
chr14	77023787	77023788	chr14:77023788:G:A	rs145192776	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr14	77051442	77051443	chr14:77051443:G:A	rs75004998	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr14	77059563	77059564	chr14:77059564:G:A	rs116473237	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr14	77059597	77059598	chr14:77059598:C:T	rs1360912415	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	77094890	77094891	chr14:77094891:C:T	rs115727965	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr14	77296528	77296529	chr14:77296529:C:T	rs3783986	C	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr14	77615766	77615767	chr14:77615767:T:C	rs176906	T	C	T	Sox1_MA0870.1	3	1	-	3.8774806557138346	-3.0231090114833905	CACAAGGGGATTGTT
chr14	77638553	77638554	chr14:77638554:G:A	rs8017748	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr14	77697507	77697508	chr14:77697508:G:A	rs2299931	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr14	77767895	77767896	chr14:77767896:G:T	rs8014635	G	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr14	78106080	78106081	chr14:78106081:C:T	rs177173	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr14	78982702	78982703	chr14:78982703:C:T	rs7142893	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr14	78989286	78989287	chr14:78989287:A:G	rs31406	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr14	79306117	79306118	chr14:79306118:G:A	rs79040200	G	A	G	Sox1_MA0870.1	10	1	+	3.814522110251833	-0.7530500453209396	GACATTTGCAGTGCT
chr14	79584805	79584806	chr14:79584806:G:T	rs896139332	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr14	79604183	79604184	chr14:79604184:C:T	rs114875169	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr14	79729934	79729935	chr14:79729935:T:C	rs76806262	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr14	80095885	80095886	chr14:80095886:C:T	rs148685615	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr14	80195991	80195992	chr14:80195992:C:T	rs56025506	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr14	80203236	80203237	chr14:80203237:T:C	rs225014	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr14	80385532	80385533	chr14:80385533:G:A	rs12890383	G	A	A	Sox1_MA0870.1	10	1	+	2.954491366673193	-1.61308078889958	AACAAGGGCAGTGCC
chr14	80953962	80953963	chr14:80953963:A:G	rs7154269	A	G	G	Sox1_MA0870.1	14	1	+	8.48952393757612	8.664855174643163	AACAATACCATGGTA
chr14	80957773	80957774	chr14:80957774:T:G	rs2268451	T	G	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr14	81031780	81031781	chr14:81031781:C:T	rs61978723	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr14	81034253	81034254	chr14:81034254:G:T	rs12323621	G	T	T	Sox1_MA0870.1	34	0	+	0	0	.
chr14	81234659	81234660	chr14:81234660:T:C	rs12586249	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr14	81400113	81400114	chr14:81400114:G:A	rs3853419	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr14	81401761	81401762	chr14:81401762:T:C	rs900523774	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr14	81478675	81478676	chr14:81478676:G:A	rs17115506	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr14	81607606	81607607	chr14:81607607:T:C	rs8017982	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr14	81946661	81946662	chr14:81946662:G:A	rs72695471	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr14	81946672	81946673	chr14:81946673:G:A	rs61989323	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr14	82385096	82385097	chr14:82385097:T:A	rs73354976	T	A	T	Sox1_MA0870.1	33	0	-	0	0	.
chr14	82988140	82988141	chr14:82988141:G:A	rs1263459	G	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr14	83009491	83009492	chr14:83009492:G:A	rs2104797	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr14	83158372	83158373	chr14:83158373:T:C	rs10149498	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr14	83500800	83500801	chr14:83500801:A:G	rs76346306	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr14	84006846	84006847	chr14:84006847:C:T	chr14:84006847:C:T	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr14	84091540	84091541	chr14:84091541:G:A	rs1779559	G	A	A	Sox1_MA0870.1	12	1	+	6.993129325670187	0.08437454635496655	GACAATGAGATTGCA
chr14	84112724	84112725	chr14:84112725:T:G	rs7159548	T	G	T	Sox1_MA0870.1	20	0	-	0	0	.
chr14	84251120	84251121	chr14:84251121:A:T	chr14:84251121:A:T	A	T	A	Sox1_MA0870.1	10	1	-	7.043773004538579	0.23507592040224556	AACAATAAGATTTTT
chr14	84418872	84418873	chr14:84418873:G:C	rs72689531	G	C	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr14	84963452	84963453	chr14:84963453:G:A	rs1480417	G	A	A	Sox1_MA0870.1	4	1	-	6.80524295728585	1.9844776377408788	GACACTAAAATTGTG
chr14	84963470	84963471	chr14:84963471:G:A	rs1480418	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr14	85042277	85042278	chr14:85042278:T:C	rs17740194	T	C	T	Sox1_MA0870.1	5	1	+	3.923295990691359	-2.9798687679564018	AACAATGGCATCCTT
chr14	85223718	85223719	chr14:85223719:C:T	rs1667517	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr14	85241571	85241572	chr14:85241572:A:G	rs7158899	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr14	85241579	85241580	chr14:85241580:T:C	rs1667504	T	C	C	Sox1_MA0870.1	5	1	+	4.938631151754245	-1.964533606893514	GACACTTTAATTGCT
chr14	85542702	85542703	chr14:85542703:A:G	rs117252551	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr14	85567029	85567030	chr14:85567030:G:T	rs75371143	G	T	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr14	85851838	85851839	chr14:85851839:C:A	rs8019569	C	A	A	Sox1_MA0870.1	2	1	+	9.972403806869648	3.063649027554428	AACAGTTACATTGTT
chr14	86892871	86892872	chr14:86892872:T:G	rs8013564	T	G	T	Sox1_MA0870.1	34	0	+	0	0	.
chr14	86999086	86999087	chr14:86999087:A:G	rs768156675	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr14	87282670	87282671	chr14:87282671:T:C	rs76920004	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr14	87282679	87282680	chr14:87282680:C:T	rs12433698	C	T	T	Sox1_MA0870.1	2	1	+	9.194505652834332	2.2857508735191105	GACAAAATCATTGTG
chr14	87402553	87402554	chr14:87402554:G:T	rs9323805	G	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr14	87771359	87771360	chr14:87771360:T:C	rs113125986	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr14	88072712	88072713	chr14:88072713:G:A	rs4904422	G	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr14	89127905	89127906	chr14:89127906:T:A	rs116469753	T	A	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr14	89221311	89221312	chr14:89221312:C:G	rs189274834	C	G	C	Sox1_MA0870.1	15	0	+	0	0	.
chr14	89241174	89241175	chr14:89241175:C:T	rs11504649	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr14	89532035	89532036	chr14:89532036:T:C	rs1756303	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr14	89631741	89631742	chr14:89631742:T:C	rs147958919	T	C	T	Sox1_MA0870.1	10	1	+	6.697946594285463	-0.11075048985087144	TAGAATAACATTGCT
chr14	89874337	89874338	chr14:89874338:C:T	rs113029419	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr14	89915242	89915243	chr14:89915243:A:G	rs4445834	A	G	G	Sox1_MA0870.1	0	1	+	5.5065289194537	4.164405776646946	ACCAATGACATTATT
chr14	89973188	89973189	chr14:89973189:C:A	rs35787421	C	A	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr14	90137704	90137705	chr14:90137705:A:C	rs78293127	A	C	A	Sox1_MA0870.1	33	0	-	0	0	.
chr14	90423933	90423934	chr14:90423934:C:A	rs2110115	C	A	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr14	90435765	90435766	chr14:90435766:C:G	rs768408	C	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr14	90795364	90795365	chr14:90795365:T:C	rs55920536	T	C	C	Sox1_MA0870.1	9	1	-	7.171282638699769	0.26252785938454837	CACAATTCGAGTGTA
chr14	91195179	91195180	chr14:91195180:A:G	rs8003833	A	G	a	Sox1_MA0870.1	9	1	+	3.685787965990473	-3.2229668133247484	GACCATAACAGTGGG
chr14	91400912	91400913	chr14:91400913:T:C	rs1285826	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr14	91400932	91400933	chr14:91400933:T:C	rs72701456	T	C	T	Sox1_MA0870.1	9	1	-	3.6731258523254837	-3.2356289269897363	AACCATACCACTGTG
chr14	91400940	91400941	chr14:91400941:T:A	rs4904773	T	A	T	Sox1_MA0870.1	1	1	-	3.6731258523254837	0.3958416051643442	AACCATACCACTGTG
chr14	91410992	91410993	chr14:91410993:G:C	rs534408767	G	C	G	Sox1_MA0870.1	18	0	-	0	0	.
chr14	91417154	91417155	chr14:91417155:G:A	rs1742546	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr14	91681442	91681443	chr14:91681443:G:C	rs1472997	G	C	G	Sox1_MA0870.1	31	0	+	0	0	.
chr14	91834275	91834276	chr14:91834276:T:G	rs11848727	T	G	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr14	91898477	91898478	chr14:91898478:T:C	rs2498838	T	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr14	91947512	91947513	chr14:91947513:T:C	chr14:91947513:T:C	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr14	91947543	91947544	chr14:91947544:A:G	rs1358332660	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr14	92348481	92348482	chr14:92348482:G:A	rs11621207	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr14	92349938	92349939	chr14:92349939:C:T	rs80123902	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr14	92381855	92381856	chr14:92381856:A:G	rs61975636	A	G	A	Sox1_MA0870.1	6	1	+	3.3534486199775637	1.8148419268368459	GACACCAGGATTGTT
chr14	92490831	92490832	chr14:92490832:T:C	rs61977322	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr14	92524256	92524257	chr14:92524257:C:T	rs1952328	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr14	92531749	92531750	chr14:92531750:C:T	rs1390408212	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr14	92531750	92531751	chr14:92531751:G:A	rs56188517	G	A	G	Sox1_MA0870.1	0	1	+	6.558720047888983	7.900843190695735	GACACTGGCAGTGCC
chr14	92551555	92551556	chr14:92551556:C:T	rs756861308	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr14	92585368	92585369	chr14:92585369:G:A	rs10873425	G	A	A	Sox1_MA0870.1	31	0	+	0	0	.
chr14	92656796	92656797	chr14:92656797:A:G	rs11624035	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr14	92656817	92656818	chr14:92656818:A:G	rs117814502	A	G	A	Sox1_MA0870.1	11	1	-	4.282803309455861	-0.6725916763544737	GACACATGCAGTGTC
chr14	92722957	92722958	chr14:92722958:T:G	rs58522170	T	G	G	Sox1_MA0870.1	1	1	-	6.159475164868286	2.390334780023787	TACCATAGCAGTGTA
chr14	92747632	92747633	chr14:92747633:G:A	rs115138464	G	A	G	Sox1_MA0870.1	7	1	-	7.3015180507700475	7.289688998221674	AACAGTTCCAGTGTT
chr14	92784066	92784067	chr14:92784067:C:G	rs4900149	C	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr14	92784070	92784071	chr14:92784071:T:C	rs190074717	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr14	93201650	93201651	chr14:93201651:C:T	rs1263391	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr14	93271263	93271264	chr14:93271264:T:C	rs17094891	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr14	93676010	93676011	chr14:93676011:C:T	rs1998901	C	T	c	Sox1_MA0870.1	10	1	-	4.013609218226697	-0.5539629373460754	CTCAAAGGCAGTGTT
chr14	93694174	93694175	chr14:93694175:C:A	rs943323	C	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr14	93778656	93778657	chr14:93778657:C:T	rs115454434	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr14	93873986	93873987	chr14:93873987:T:C	rs8013393	T	C	C	Sox1_MA0870.1	33	0	-	0	0	.
chr14	93873996	93873997	chr14:93873997:G:A	rs8012518	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr14	93897283	93897284	chr14:93897284:A:G	rs732910	A	G	A	Sox1_MA0870.1	7	1	+	10.47660959306646	10.079631265269953	TCCAATGACATTGTT
chr14	93943210	93943211	chr14:93943211:T:C	rs78991601	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr14	93976108	93976109	chr14:93976109:C:T	rs4905125	C	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr14	93976125	93976126	chr14:93976126:C:A	rs193132680	C	A	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr14	94101420	94101421	chr14:94101421:C:T	rs11852002	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr14	94165960	94165961	chr14:94165961:G:A	rs28554131	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr14	94366695	94366696	chr14:94366696:T:C	rs1956172	T	C	-	Sox1_MA0870.1	6	1	-	7.531382622614718	5.992775929474002	GACAATACCATTCTC
chr14	94374346	94374347	chr14:94374347:G:A	rs75723855	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr14	94401267	94401268	chr14:94401268:G:T	rs7154685	G	T	G	Sox1_MA0870.1	34	0	+	0	0	.
chr14	94452381	94452382	chr14:94452382:T:G	rs11845116	T	G	T	Sox1_MA0870.1	24	0	-	0	0	.
chr14	94466753	94466754	chr14:94466754:C:A	rs17825476	C	A	C	Sox1_MA0870.1	13	1	-	8.664374709010023	12.306922435647095	AACAAAAGCATTGGT
chr14	94480980	94480981	chr14:94480981:G:A	rs12434141	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr14	94576537	94576538	chr14:94576538:T:C	rs1885135	T	C	C	Sox1_MA0870.1	14	1	+	7.29883705102873	5.787827646547326	GACACTGACAGTGAT
chr14	94655243	94655244	chr14:94655244:G:A	rs72696823	G	A	G	Sox1_MA0870.1	7	1	+	5.2331552325296755	5.630133560326184	TACAATAGCAATGAT
chr14	95019135	95019136	chr14:95019136:C:T	rs72704699	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr14	95037042	95037043	chr14:95037043:C:G	rs66527455	C	G	C	Sox1_MA0870.1	16	0	-	0	0	.
chr14	95052875	95052876	chr14:95052876:A:G	rs2353730	A	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr14	95054137	95054138	chr14:95054138:C:G	rs4410013	C	G	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr14	95144414	95144415	chr14:95144415:G:A	rs113197964	G	A	G	Sox1_MA0870.1	3	1	+	4.352046579215576	11.2526362464128	CTCGCTAACATTGTT
chr14	95197714	95197715	chr14:95197715:C:A	rs116492775	C	A	C	Sox1_MA0870.1	30	0	-	0	0	.
chr14	95197715	95197716	chr14:95197716:C:T	rs116006302	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr14	95197734	95197735	chr14:95197735:C:T	rs114270165	C	T	T	Sox1_MA0870.1	10	1	-	4.856889078283644	0.2893169227108716	AACAATGACCGTGCT
chr14	95225372	95225373	chr14:95225373:T:C	rs752625464	T	C	T	Sox1_MA0870.1	3	1	-	4.751516989308721	-2.1490726778885034	TACACTATCTTTGTG
chr14	95255777	95255778	chr14:95255778:T:C	rs114031522	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr14	95259270	95259271	chr14:95259271:T:C	rs113596013	T	C	C	Sox1_MA0870.1	3	1	-	3.8539436012335475	-3.046646065963677	CCCACTGACATTGGG
chr14	95275369	95275370	chr14:95275370:A:C	rs28677081	A	C	A	Sox1_MA0870.1	6	1	-	8.221162451880907	7.65560447445449	GTCACTTTCATTGTC
chr14	95410128	95410129	chr14:95410129:C:A	rs12892702	C	A	C	Sox1_MA0870.1	32	0	-	0	0	.
chr14	95411621	95411622	chr14:95411622:G:C	rs1569948	G	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr14	95428240	95428241	chr14:95428241:A:G	rs1187751	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr14	95487008	95487009	chr14:95487009:C:T	rs2277457	C	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr14	95667608	95667609	chr14:95667609:T:C	rs117333134	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr14	95784361	95784362	chr14:95784362:T:G	rs963331726	T	G	T	Sox1_MA0870.1	6	1	-	6.423249780446463	1.0340507776132606	AACAAAAGCAGTGGT
chr14	95784377	95784378	chr14:95784378:A:G	rs74327424	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr14	96095422	96095423	chr14:96095423:G:T	rs79395064	G	T	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr14	96249249	96249250	chr14:96249250:G:A	rs888045705	G	A	G	Sox1_MA0870.1	12	1	+	7.52792948149439	0.6191747021791683	GACACTACCATCGTC
chr14	96257558	96257559	chr14:96257559:A:G	rs61982614	A	G	A	Sox1_MA0870.1	4	1	+	7.776895745616994	0.9993174914468059	AACCATATCAGTGCT
chr14	96271392	96271393	chr14:96271393:T:C	rs12895877	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr14	96409926	96409927	chr14:96409927:A:G	rs12100763	A	G	A	Sox1_MA0870.1	10	1	+	6.874807638184224	11.442379793756997	AACAATAGCAATGGT
chr14	96634011	96634012	chr14:96634012:C:T	rs73355285	C	T	C	Sox1_MA0870.1	2	1	+	6.243520727834776	-0.6652340514804443	TACAATAGCAGGGTT
chr14	96648571	96648572	chr14:96648572:G:T	rs8021476	G	T	T	Sox1_MA0870.1	7	1	-	3.2200128524713296	3.64977368000737	ACCACTGCCACTGTT
chr14	96806044	96806045	chr14:96806045:T:G	rs2224442	T	G	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr14	97097345	97097346	chr14:97097346:T:C	rs549252340	T	C	T	Sox1_MA0870.1	9	1	-	5.708602490455126	-1.2001522888600937	GCCAAGAACATTGTT
chr14	97127880	97127881	chr14:97127881:C:T	rs2295133	C	T	C	Sox1_MA0870.1	8	1	-	7.031309064878757	4.908642403460881	ATCAATTCGAGTGTT
chr14	97177928	97177929	chr14:97177929:G:C	rs59978510	G	C	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr14	97177949	97177950	chr14:97177950:T:C	rs7149736	T	C	T	Sox1_MA0870.1	5	1	+	4.80099391194951	-2.1021708466982494	AACCATATCAGTGGC
chr14	97337046	97337047	chr14:97337047:G:A	rs147991665	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr14	97416963	97416964	chr14:97416964:A:G	rs11624413	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr14	97543367	97543368	chr14:97543368:G:A	rs947109899	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr14	97543386	97543387	chr14:97543387:A:C	rs117316387	A	C	A	Sox1_MA0870.1	1	1	+	3.914067590124309	0.1449272052798114	AATAATCACATTGTC
chr14	97754085	97754086	chr14:97754086:T:C	rs2126439	T	C	T	Sox1_MA0870.1	9	1	-	3.965402189896444	-2.9433525894187764	CACACTTTCAGTTTT
chr14	98349257	98349258	chr14:98349258:T:C	rs67146365	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr14	98544377	98544378	chr14:98544378:C:T	rs553716820	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr14	98578859	98578860	chr14:98578860:T:A	rs17097371	T	A	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr14	98592162	98592163	chr14:98592163:C:A	rs11623057	C	A	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr14	98682984	98682985	chr14:98682985:T:A	rs10133434	T	A	T	Sox1_MA0870.1	30	0	+	0	0	.
chr14	98791953	98791954	chr14:98791954:C:T	rs61981356	C	T	C	Sox1_MA0870.1	6	1	-	5.5909727870053825	7.1295794801461	CACAATGAGAGTGAT
chr14	98829082	98829083	chr14:98829083:G:A	rs145442547	G	A	G	Sox1_MA0870.1	6	1	+	7.063484127324062	8.602090820464781	CACAATGGCAGTGAA
chr14	99068315	99068316	chr14:99068316:T:A	rs807365	T	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr14	99068385	99068386	chr14:99068386:T:G	rs807366	T	G	G	Sox1_MA0870.1	7	1	-	9.790202791535375	9.360441963999335	ATCACTTACATTGTG
chr14	99170057	99170058	chr14:99170058:T:C	rs72702620	T	C	T	Sox1_MA0870.1	9	1	-	4.526136757910635	-2.382618021404586	AGCACAAGCATTGTG
chr14	99182156	99182157	chr14:99182157:C:A	rs17098348	C	A	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr14	99243423	99243424	chr14:99243424:A:G	rs2457444	A	G	A	Sox1_MA0870.1	4	1	+	6.395495771424362	-0.3820824827458257	AACAATAACAGTTCT
chr14	99316599	99316600	chr14:99316600:G:A	rs80158569	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr14	99319220	99319221	chr14:99319221:T:G	rs72702686	T	G	T	Sox1_MA0870.1	13	1	+	6.1313842234653055	2.488836496828233	CACAATGGCCTTGTC
chr14	99705009	99705010	chr14:99705010:C:T	rs145079609	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr14	99708937	99708938	chr14:99708938:C:G	rs12434024	C	G	C	Sox1_MA0870.1	28	0	+	0	0	.
chr14	99791929	99791930	chr14:99791930:G:C	rs7161099	G	C	C	Sox1_MA0870.1	10	1	+	7.1035235855713275	2.5359514299985544	CTCACTAGCAGTGTC
chr14	99865538	99865539	chr14:99865539:T:C	rs11160553	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr14	99881285	99881286	chr14:99881286:C:A	rs781771584	C	A	C	Sox1_MA0870.1	23	0	+	0	0	.
chr14	100164974	100164975	chr14:100164975:T:C	rs55940508	T	C	T	Sox1_MA0870.1	4	1	-	5.888803206301465	-0.8887750478687229	CACCATTGCAGTGTA
chr14	100484786	100484787	chr14:100484787:T:C	rs10873518	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr14	100527707	100527708	chr14:100527708:C:T	rs7142209	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr14	100604221	100604222	chr14:100604222:A:G	rs873076	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr14	100612436	100612437	chr14:100612437:T:G	rs12898185	T	G	T	Sox1_MA0870.1	5	1	-	5.353556104043969	3.469521358706743	AAAAAAATCATTGTT
chr14	100665264	100665265	chr14:100665265:A:G	rs151164367	A	G	A	Sox1_MA0870.1	5	1	+	10.219842643247897	8.335807897910673	AACAAATACATTGTC
chr14	100665277	100665278	chr14:100665278:G:A	rs141375817	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr14	100734307	100734308	chr14:100734308:T:C	rs1802710	T	C	C	Sox1_MA0870.1	3	1	-	4.417602919329824	-2.4829867478674013	CCCAATGTCAGTGCA
chr14	100892493	100892494	chr14:100892494:G:A	rs74082829	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr14	100962740	100962741	chr14:100962741:G:A	rs7142100	G	A	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr14	101063076	101063077	chr14:101063077:G:A	rs4906033	G	A	A	Sox1_MA0870.1	10	1	+	4.854276941629801	0.28670478605702965	ATGAATATCAGTGTT
chr14	101063099	101063100	chr14:101063100:G:A	rs4906034	G	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr14	101066950	101066951	chr14:101066951:A:G	rs8015875	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr14	101124196	101124197	chr14:101124197:A:G	rs73356967	A	G	A	Sox1_MA0870.1	5	1	-	4.109792206780167	-2.7933725518675927	CACAATAGCATTCAG
chr14	101185108	101185109	chr14:101185109:G:C	rs72702991	G	C	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr14	101185116	101185117	chr14:101185117:G:A	rs144886081	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr14	101227859	101227860	chr14:101227860:A:C	rs7148774	A	C	A	Sox1_MA0870.1	21	0	-	0	0	.
chr14	101232127	101232128	chr14:101232128:G:T	rs1763209	G	T	G	Sox1_MA0870.1	6	1	-	3.685975524002454	9.075174526835657	GACAATCGCCTTGTT
chr14	101474225	101474226	chr14:101474226:C:G	rs145409020	C	G	C	Sox1_MA0870.1	8	1	+	4.829125065932282	1.058622073031945	AACAATATCATTTGA
chr14	101533775	101533776	chr14:101533776:G:A	rs76689965	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr14	101571562	101571563	chr14:101571563:T:C	rs11849893	T	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr14	101856658	101856659	chr14:101856659:C:G	rs3742421	C	G	C	Sox1_MA0870.1	32	0	+	0	0	.
chr14	101862981	101862982	chr14:101862982:C:T	rs1746584	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr14	101943921	101943922	chr14:101943922:C:A	rs4906168	C	A	C	Sox1_MA0870.1	19	0	+	0	0	.
chr14	102078906	102078907	chr14:102078907:A:G	rs146450565	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr14	102209499	102209500	chr14:102209500:G:T	rs12888595	G	T	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr14	102580022	102580023	chr14:102580023:G:A	rs940062510	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr14	102594624	102594625	chr14:102594625:T:C	rs1957568	T	C	.	Sox1_MA0870.1	9	1	-	4.006949724201528	-2.901805055113695	AACACTAACATGGAC
chr14	102630014	102630015	chr14:102630015:T:C	rs9324049	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr14	102697117	102697118	chr14:102697118:A:G	rs4900550	A	G	A	Sox1_MA0870.1	4	1	+	3.625825002890983	-3.151753251279202	GTCAACAGCATTGCT
chr14	102901609	102901610	chr14:102901610:G:A	rs77883136	G	A	G	Sox1_MA0870.1	4	1	+	4.312588353591513	11.0901666077617	GACAGTGACAGTGTC
chr14	103328598	103328599	chr14:103328599:G:A	rs34143771	G	A	g	Sox1_MA0870.1	23	0	-	0	0	.
chr14	103418953	103418954	chr14:103418954:A:G	rs35233301	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr14	103526254	103526255	chr14:103526255:G:A	rs75482283	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr14	103871122	103871123	chr14:103871123:T:C	rs78113926	T	C	T	Sox1_MA0870.1	5	1	+	11.671116352663455	4.767951594015697	TACAATGGCATTGCT
chr14	104283423	104283424	chr14:104283424:C:T	rs115993688	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr14	104321718	104321719	chr14:104321719:C:T	rs75987633	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr14	104325916	104325917	chr14:104325917:G:A	rs11160804	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr14	104400608	104400609	chr14:104400609:C:T	rs57685825	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr14	104407022	104407023	chr14:104407023:C:T	rs4906454	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr14	104439013	104439014	chr14:104439014:T:C	rs60820727	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr14	104609270	104609271	chr14:104609271:A:T	rs10129754	A	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr14	104618825	104618826	chr14:104618826:C:T	rs147140144	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr14	104894716	104894717	chr14:104894717:A:G	rs199553262	A	G	A	Sox1_MA0870.1	4	1	+	5.796301935387801	-0.9812763187823873	ATCAATGCCATCGTG
chr14	105012246	105012247	chr14:105012247:A:G	rs4073698	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr14	105194535	105194536	chr14:105194536:C:T	rs151070612	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr14	105387934	105387935	chr14:105387935:C:T	rs1276190743	C	T	C	Sox1_MA0870.1	12	1	-	3.410435449329807	-3.4983193299854136	CCCACTATCCTTGTT
chr14	105418623	105418624	chr14:105418624:C:T	rs60264385	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr14	105498611	105498612	chr14:105498612:C:T	rs587623462	C	T	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr14	105612109	105612110	chr14:105612110:C:T	rs8011915	C	T	.	Sox1_MA0870.1	-16	0	-	0	0	.
chr14	105830598	105830599	chr14:105830599:T:C	rs57183756	T	C	.	Sox1_MA0870.1	17	0	-	0	0	.
chr14	105986724	105986725	chr14:105986725:G:C	rs370887829	G	C	.	Sox1_MA0870.1	-1	0	-	0	0	.
chr14	105986729	105986730	chr14:105986730:A:G	rs1065059	A	G	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr14	106001932	106001933	chr14:106001933:G:A	rs55985216	G	A	.	Sox1_MA0870.1	27	0	+	0	0	.
chr14	106355378	106355379	chr14:106355379:A:G	rs5029576	A	G	-	Sox1_MA0870.1	-18	0	-	0	0	.
chr14	106510961	106510962	chr14:106510962:C:A	rs2073676	C	A	a	Sox1_MA0870.1	7	1	+	8.885362047182895	9.315122874718936	TACAATTCGATTGTG
chr14	106637902	106637903	chr14:106637903:A:G	rs34439330	A	G	g	Sox1_MA0870.1	13	1	-	4.798917825557645	2.621262528106651	ATCACAACCAGTGTT
chr14	106708739	106708740	chr14:106708740:A:C	rs7141997	A	C	.	Sox1_MA0870.1	20	0	-	0	0	.
chr14	106842109	106842110	chr14:106842110:A:G	rs2337453	A	G	.	Sox1_MA0870.1	23	0	-	0	0	.
chr14	106865512	106865513	chr14:106865513:C:A	chr14:106865513:C:A	C	A	.	Sox1_MA0870.1	-3	0	-	0	0	.
chr15	17026689	17026690	chr15:17026690:G:A	rs911143370	G	A	.	Sox1_MA0870.1	30	0	-	0	0	.
chr15	17026693	17026694	chr15:17026694:G:C	rs1324431446	G	C	.	Sox1_MA0870.1	26	0	-	0	0	.
chr15	20221203	20221204	chr15:20221204:G:A	rs112393097	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr15	20352038	20352039	chr15:20352039:G:A	rs535819497	G	A	g	Sox1_MA0870.1	20	0	-	0	0	.
chr15	20388673	20388674	chr15:20388674:G:A	rs11248769	G	A	.	Sox1_MA0870.1	-15	0	-	0	0	.
chr15	20661639	20661640	chr15:20661640:C:A	rs12442606	C	A	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr15	20669456	20669457	chr15:20669457:G:C	rs62000627	G	C	G	Sox1_MA0870.1	2	1	-	5.653697889957097	-1.2550568893581227	AACACTTCCACTGTA
chr15	20669469	20669470	chr15:20669470:A:C	rs11633771	A	C	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	21260080	21260081	chr15:21260081:C:T	rs4984169	C	T	.	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	21261928	21261929	chr15:21261929:G:A	rs34484317	G	A	.	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	21261955	21261956	chr15:21261956:G:A	rs34415087	G	A	.	Sox1_MA0870.1	7	1	+	6.1158377333324525	6.51281606112896	GCCACTAGCAGTGTA
chr15	21261979	21261980	chr15:21261980:T:C	rs7176333	T	C	.	Sox1_MA0870.1	31	0	+	0	0	.
chr15	22239331	22239332	chr15:22239332:G:A	rs147444408	G	A	g	Sox1_MA0870.1	-20	0	-	0	0	.
chr15	22254867	22254868	chr15:22254868:A:G	rs7496788	A	G	a	Sox1_MA0870.1	5	1	-	5.1454147222813855	-1.7577500363663736	AACAATGTCATTTCC
chr15	22256870	22256871	chr15:22256871:C:T	rs7179112	C	T	-	Sox1_MA0870.1	18	0	-	0	0	.
chr15	22772202	22772203	chr15:22772203:T:C	rs879200654	T	C	t	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	22896156	22896157	chr15:22896157:C:T	rs1009153	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr15	22925400	22925401	chr15:22925401:C:T	rs60506149	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr15	22954107	22954108	chr15:22954108:C:G	rs6606805	C	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr15	23096233	23096234	chr15:23096234:C:T	rs12591320	C	T	c	Sox1_MA0870.1	-14	0	+	0	0	.
chr15	24746266	24746267	chr15:24746267:A:G	rs11852400	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr15	24951480	24951481	chr15:24951481:T:A	rs12898534	T	A	T	Sox1_MA0870.1	9	1	-	4.45302284132163	-2.45573193799359	GACAAAAACATTTTT
chr15	25680047	25680048	chr15:25680048:T:C	rs3736186	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr15	25901251	25901252	chr15:25901252:C:A	rs74949202	C	A	c	Sox1_MA0870.1	-5	0	-	0	0	.
chr15	26080357	26080358	chr15:26080358:C:T	rs142918786	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr15	26171371	26171372	chr15:26171372:A:G	rs1282807	A	G	G	Sox1_MA0870.1	5	1	-	5.390844668028286	-1.512320090619474	TCCCATGACATTGTT
chr15	26231027	26231028	chr15:26231028:G:A	rs6576551	G	A	A	Sox1_MA0870.1	10	1	+	3.7563888796190397	-0.8111832759537331	CAAAATTCCAGTGCT
chr15	26725080	26725081	chr15:26725081:A:G	rs60229432	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr15	26806404	26806405	chr15:26806405:T:C	rs4906911	T	C	C	Sox1_MA0870.1	4	1	-	6.94489515197701	0.16731689780682135	AAAAATGCCATTGTA
chr15	26888307	26888308	chr15:26888308:G:T	rs80256359	G	T	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr15	26888321	26888322	chr15:26888322:C:A	rs9744196	C	A	C	Sox1_MA0870.1	8	1	+	4.3284292873329395	-1.5647403669852746	AACAATTTCTTTGAG
chr15	27600994	27600995	chr15:27600995:G:A	rs1551865	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr15	27622220	27622221	chr15:27622221:C:G	rs1477820	C	G	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr15	28118121	28118122	chr15:28118122:G:A	rs145533055	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr15	28457912	28457913	chr15:28457913:G:C	rs1823353	G	C	g	Sox1_MA0870.1	23	0	-	0	0	.
chr15	28955545	28955546	chr15:28955546:A:G	rs16954826	A	G	A	Sox1_MA0870.1	10	1	-	6.697946594285463	-0.11075048985087099	TACAATAACATTTCT
chr15	29033631	29033632	chr15:29033632:T:A	rs183967734	T	A	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr15	29115304	29115305	chr15:29115305:A:C	rs12050880	A	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr15	29544744	29544745	chr15:29544745:A:C	rs8040300	A	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	29544782	29544783	chr15:29544783:C:T	rs11636716	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr15	29549898	29549899	chr15:29549899:T:C	rs7162050	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr15	29610599	29610600	chr15:29610600:A:G	rs7161885	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr15	29636551	29636552	chr15:29636552:A:G	rs7183354	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr15	29880498	29880499	chr15:29880499:T:C	rs62014490	T	C	T	Sox1_MA0870.1	10	1	+	7.428557826088181	0.6198607419518459	CACAATACCATAGTG
chr15	29905125	29905126	chr15:29905126:C:T	rs8026965	C	T	A	Sox1_MA0870.1	9	1	-	3.710810487275317	10.619565266590538	GTCAATTACGTTGTC
chr15	29925786	29925787	chr15:29925787:C:T	rs1718987	C	T	T	Sox1_MA0870.1	10	1	-	5.08601528702601	0.5184431314532373	TACCCTTTCAGTGTT
chr15	31064221	31064222	chr15:31064222:T:C	rs4779814	T	C	T	Sox1_MA0870.1	14	1	-	6.6777277647576705	6.853059001824715	AACAAGAACAGTGTA
chr15	31068353	31068354	chr15:31068354:G:A	rs12915986	G	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr15	31069400	31069401	chr15:31069401:G:A	rs10400821	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr15	31077294	31077295	chr15:31077295:G:A	rs7180591	G	A	G	Sox1_MA0870.1	2	1	-	3.5088250922456377	-3.399929687069583	AACACTTGCACTGCA
chr15	31448090	31448091	chr15:31448091:A:G	rs8040885	A	G	A	Sox1_MA0870.1	7	1	-	4.999840536118275	5.011669588666648	CACAACATCAGTGTA
chr15	31455851	31455852	chr15:31455852:G:T	rs67634762	G	T	G	Sox1_MA0870.1	2	1	-	4.370699401453032	-2.538055377862188	CTCAAGGGCATTGTT
chr15	31467600	31467601	chr15:31467601:C:T	rs12441529	C	T	c	Sox1_MA0870.1	-14	0	+	0	0	.
chr15	31472856	31472857	chr15:31472857:T:C	rs75268208	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr15	31595862	31595863	chr15:31595863:G:A	rs4779900	G	A	G	Sox1_MA0870.1	4	1	-	5.787827646547326	0.9670623270023535	GACACTGACAGTGAC
chr15	31607171	31607172	chr15:31607172:G:T	rs79184559	G	T	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr15	31609491	31609492	chr15:31609492:A:G	rs2085667	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr15	31669361	31669362	chr15:31669362:A:G	rs4041945	A	G	A	Sox1_MA0870.1	10	1	-	3.3242236952304918	-3.4844733889058417	CACAACTCCATTGAC
chr15	32125131	32125132	chr15:32125132:G:A	rs12916879	G	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr15	32659991	32659992	chr15:32659992:G:T	rs8023613	G	T	G	Sox1_MA0870.1	2	1	-	3.3947353845772117	-3.5140193947380087	AGCACCTGCATTGTT
chr15	32728677	32728678	chr15:32728678:T:C	rs28617440	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	32808305	32808306	chr15:32808306:G:C	rs28718061	G	C	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr15	32838803	32838804	chr15:32838804:T:G	rs1264857905	T	G	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr15	32970535	32970536	chr15:32970536:T:C	rs8034555	T	C	C	Sox1_MA0870.1	4	1	-	7.354636660868798	0.5770584066986104	GACAATGACAGTGAA
chr15	32974774	32974775	chr15:32974775:G:A	rs2923052	G	A	G	Sox1_MA0870.1	13	1	+	3.868216649623232	4.165238349671146	CACAATATCAATGGG
chr15	33127771	33127772	chr15:33127772:G:A	rs713277	G	A	G	Sox1_MA0870.1	10	1	+	4.9362419750261886	0.3686698194534146	TCCACTTGCAGTGTC
chr15	33242492	33242493	chr15:33242493:C:T	rs16967369	C	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr15	33292574	33292575	chr15:33292575:T:C	rs4415974	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr15	33312556	33312557	chr15:33312557:C:T	rs80155756	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr15	33980307	33980308	chr15:33980308:T:G	rs1051990882	T	G	T	Sox1_MA0870.1	26	0	-	0	0	.
chr15	34018251	34018252	chr15:34018252:G:C	rs563833925	G	C	G	Sox1_MA0870.1	14	1	-	7.725437059497004	7.510764376260305	CACAATATCACTGTC
chr15	34147557	34147558	chr15:34147558:T:C	rs75426827	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr15	35218909	35218910	chr15:35218910:G:A	rs117866038	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr15	35308477	35308478	chr15:35308478:G:A	rs318335	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr15	35618538	35618539	chr15:35618539:T:C	rs16961336	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr15	36086678	36086679	chr15:36086679:G:A	rs8028954	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr15	36106834	36106835	chr15:36106835:A:G	rs12592136	A	G	A	Sox1_MA0870.1	3	1	+	5.580178815652561	-1.3204108515446644	ATCACTAACATTCTT
chr15	36160532	36160533	chr15:36160533:G:A	rs76194941	G	A	G	Sox1_MA0870.1	12	1	+	6.138358630958071	-0.77039614835715	CAAAATGACATTGTA
chr15	36160540	36160541	chr15:36160541:A:G	rs12903973	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr15	36481297	36481298	chr15:36481298:G:A	rs11633887	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	36483860	36483861	chr15:36483861:A:G	rs2167992	A	G	G	Sox1_MA0870.1	11	1	-	7.19545956537225	2.240064579561915	ATCAATATCACTGTT
chr15	36952084	36952085	chr15:36952085:G:A	rs548208020	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr15	37017179	37017180	chr15:37017180:A:G	rs548796952	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr15	37046566	37046567	chr15:37046567:T:G	chr15:37046567:T:G	T	G	T	Sox1_MA0870.1	31	0	-	0	0	.
chr15	37110471	37110472	chr15:37110472:G:A	chr15:37110472:G:A	G	A	G	Sox1_MA0870.1	10	1	+	6.406618534926639	1.8390463793538658	ACCAATTCCAGTGCG
chr15	37359379	37359380	chr15:37359380:G:C	rs80109054	G	C	G	Sox1_MA0870.1	19	0	-	0	0	.
chr15	37558523	37558524	chr15:37558524:G:A	rs4924171	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr15	37883513	37883514	chr15:37883514:T:G	rs17556145	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr15	38090375	38090376	chr15:38090376:T:C	rs16966228	T	C	T	Sox1_MA0870.1	5	1	+	6.0868204664177625	-0.8163442922299984	GACAATTGGATTGGC
chr15	38164053	38164054	chr15:38164054:G:A	rs11073298	G	A	g	Sox1_MA0870.1	-10	0	-	0	0	.
chr15	38304823	38304824	chr15:38304824:C:A	rs1522777	C	A	C	Sox1_MA0870.1	8	1	+	4.175416663296277	-1.717752991021937	CGCTATTACATTGTG
chr15	38536968	38536969	chr15:38536969:G:C	rs7495618	G	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	38789593	38789594	chr15:38789594:A:G	rs62007727	A	G	A	Sox1_MA0870.1	6	1	-	6.07072428882428	1.6545740017053787	AACAATTAGATTTTT
chr15	38862192	38862193	chr15:38862193:G:A	rs78853109	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr15	38872851	38872852	chr15:38872852:A:G	rs4614698	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr15	38991747	38991748	chr15:38991748:G:A	rs114776735	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr15	38991777	38991778	chr15:38991778:C:T	rs10851375	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr15	39075333	39075334	chr15:39075334:A:G	rs12595617	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr15	39075353	39075354	chr15:39075354:A:G	rs12915961	A	G	A	Sox1_MA0870.1	6	1	+	4.828535044682105	3.2899283515413864	ATCCCTAGCATTGCT
chr15	39076140	39076141	chr15:39076141:G:C	rs12595850	G	C	G	Sox1_MA0870.1	6	1	+	4.25884301211826	0.4082507024257751	CCCAAAGACATTGTA
chr15	39184935	39184936	chr15:39184936:A:G	rs78740587	A	G	A	Sox1_MA0870.1	6	1	-	5.329719946899253	0.9135696597803513	GTCAATTTTATTGCT
chr15	39365444	39365445	chr15:39365445:G:A	rs1470148	G	A	G	Sox1_MA0870.1	4	1	-	5.245007649205544	0.42424232966057207	CACACTTTTATTGCC
chr15	39819956	39819957	chr15:39819957:A:G	rs676455	A	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr15	40012205	40012206	chr15:40012206:A:C	rs12903784	A	C	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr15	40039184	40039185	chr15:40039185:C:A	rs142384915	C	A	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	40104045	40104046	chr15:40104046:C:T	rs117982341	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	40126555	40126556	chr15:40126556:T:C	rs116432681	T	C	-	Sox1_MA0870.1	-9	0	-	0	0	.
chr15	40217319	40217320	chr15:40217320:A:G	rs141553087	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	40247171	40247172	chr15:40247172:A:G	rs2306480	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr15	40755859	40755860	chr15:40755860:G:A	rs7175361	G	A	G	Sox1_MA0870.1	2	1	-	10.593563773880943	3.6848089945657225	CACAATAAAATTGTT
chr15	40767188	40767189	chr15:40767189:T:C	rs2301176	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr15	40811541	40811542	chr15:40811542:G:A	rs690269	G	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr15	41190601	41190602	chr15:41190602:T:C	rs513280	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	41483191	41483192	chr15:41483192:G:C	rs78249706	G	C	G	Sox1_MA0870.1	22	0	-	0	0	.
chr15	41487670	41487671	chr15:41487671:A:T	rs8031932	A	T	A	Sox1_MA0870.1	5	1	-	3.4557410719434025	-1.5633889413671307	GACAATACCTGTGAT
chr15	41498261	41498262	chr15:41498262:C:T	rs1757460	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr15	42048650	42048651	chr15:42048651:G:T	rs1712413	G	T	G	Sox1_MA0870.1	12	1	+	3.916696054932263	-2.9920587243829577	AACAATGACAGCGAG
chr15	42062048	42062049	chr15:42062049:A:T	rs776702	A	T	T	Sox1_MA0870.1	19	0	+	0	0	.
chr15	42072677	42072678	chr15:42072678:G:A	rs16972615	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr15	42153788	42153789	chr15:42153789:A:G	rs1624183	A	G	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr15	42159727	42159728	chr15:42159728:T:C	rs541092683	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr15	42696702	42696703	chr15:42696703:G:A	rs142591139	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr15	42761843	42761844	chr15:42761844:T:G	rs1915241	T	G	g	Sox1_MA0870.1	15	0	+	0	0	.
chr15	42921042	42921043	chr15:42921043:C:T	rs148961704	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr15	43182061	43182062	chr15:43182062:C:G	rs551554714	C	G	c	Sox1_MA0870.1	21	0	-	0	0	.
chr15	43297003	43297004	chr15:43297004:A:G	rs78849335	A	G	a	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	43952368	43952369	chr15:43952369:T:C	rs8035402	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr15	44727913	44727914	chr15:44727914:A:G	rs7168090	A	G	A	Sox1_MA0870.1	10	1	-	5.144672933034368	-1.6640241511019638	CACAAAACAATTGTT
chr15	45139607	45139608	chr15:45139608:G:T	rs2271435	G	T	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr15	45158200	45158201	chr15:45158201:A:C	rs931236975	A	C	A	Sox1_MA0870.1	1	1	+	5.574774723073859	1.8056343382293605	CACCCTGCCATTGTA
chr15	45200540	45200541	chr15:45200541:C:A	chr15:45200541:C:A	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr15	45241775	45241776	chr15:45241776:T:C	rs28897155	T	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr15	45542854	45542855	chr15:45542855:C:T	rs116331531	C	T	C	Sox1_MA0870.1	2	1	+	8.228868955349883	1.320114176034664	AACCATATCAGTGTG
chr15	45551816	45551817	chr15:45551817:C:A	rs186909624	C	A	C	Sox1_MA0870.1	14	1	-	5.319329148054004	7.045011235772108	AACAATACCATGGAG
chr15	45689950	45689951	chr15:45689951:A:G	rs78170651	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	45862137	45862138	chr15:45862138:G:C	rs117437423	G	C	G	Sox1_MA0870.1	8	1	-	8.547735763391316	4.777232770490981	CTCAATTACATTGCC
chr15	46015275	46015276	chr15:46015276:A:G	rs12908219	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr15	46232713	46232714	chr15:46232714:C:T	rs1560937	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr15	46232714	46232715	chr15:46232715:A:G	rs1560936	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr15	46232747	46232748	chr15:46232748:G:A	rs1560935	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr15	46390537	46390538	chr15:46390538:A:G	rs77905174	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr15	46715330	46715331	chr15:46715331:A:G	rs17268264	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr15	47035944	47035945	chr15:47035945:T:A	rs57143555	T	A	t	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	47116918	47116919	chr15:47116919:T:C	rs8038547	T	C	T	Sox1_MA0870.1	6	1	+	4.364635906841652	-0.05151438027724853	GACACTTACATTTCT
chr15	47185376	47185377	chr15:47185377:C:T	rs186712108	C	T	C	Sox1_MA0870.1	14	1	-	4.131465282463912	3.956134045396868	AACAATTTCAATGGG
chr15	47333082	47333083	chr15:47333083:G:T	rs12913499	G	T	G	Sox1_MA0870.1	17	0	+	0	0	.
chr15	47415316	47415317	chr15:47415317:C:T	rs281215	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr15	47780545	47780546	chr15:47780546:G:T	rs7169788	G	T	G	Sox1_MA0870.1	7	1	+	7.212798827681751	7.168187275393845	CACACAAGCATTGTA
chr15	47780976	47780977	chr15:47780977:C:G	rs11070612	C	G	C	Sox1_MA0870.1	17	0	-	0	0	.
chr15	48389105	48389106	chr15:48389106:G:A	rs74918657	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr15	48389113	48389114	chr15:48389114:T:C	rs548815197	T	C	T	Sox1_MA0870.1	6	1	+	5.142189553548243	0.7260392664293422	GACAAATACATTGAA
chr15	48449939	48449940	chr15:48449940:G:A	rs112345859	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr15	48452080	48452081	chr15:48452081:T:C	rs74318713	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr15	48465262	48465263	chr15:48465263:T:C	rs7171359	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr15	48859205	48859206	chr15:48859206:C:T	rs1974961	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr15	48861395	48861396	chr15:48861396:T:G	rs76622101	T	G	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr15	48921764	48921765	chr15:48921765:T:C	rs35617836	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr15	49093398	49093399	chr15:49093399:A:T	rs73406186	A	T	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	49353141	49353142	chr15:49353142:T:C	rs12902096	T	C	T	Sox1_MA0870.1	3	1	-	6.693648553807488	-0.2069411133897372	CACACTATCAGTGGC
chr15	49473564	49473565	chr15:49473565:C:T	rs12440323	C	T	C	Sox1_MA0870.1	12	1	-	6.292114008741022	-0.6166407705741985	TCCAATATGATTGTC
chr15	49620570	49620571	chr15:49620571:C:T	rs13329455	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr15	49689778	49689779	chr15:49689779:T:C	rs12905627	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr15	49815057	49815058	chr15:49815058:C:T	rs1848282	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr15	49815103	49815104	chr15:49815104:A:C	rs190824616	A	C	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr15	49815827	49815828	chr15:49815828:G:A	rs1507584	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr15	49878573	49878574	chr15:49878574:A:G	rs1344851697	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr15	49962487	49962488	chr15:49962488:A:G	rs147936885	A	G	A	Sox1_MA0870.1	4	1	+	4.427128250747602	-2.350450003422585	AACAATGCCAGTACT
chr15	49986493	49986494	chr15:49986494:G:A	rs12101586	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr15	50224778	50224779	chr15:50224779:C:T	rs117125842	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr15	50392232	50392233	chr15:50392233:G:A	rs184062036	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	50869541	50869542	chr15:50869542:G:A	rs11070815	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr15	50909322	50909323	chr15:50909323:C:T	rs145058278	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr15	51076039	51076040	chr15:51076040:T:C	rs17522120	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr15	51184089	51184090	chr15:51184090:G:A	rs35373992	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr15	51184092	51184093	chr15:51184093:G:A	rs12911314	G	A	G	Sox1_MA0870.1	0	1	+	7.175100030763732	8.517223173570484	GGCACTTACATTGCT
chr15	51189724	51189725	chr15:51189725:A:G	rs2899469	A	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr15	51204071	51204072	chr15:51204072:C:T	rs146169068	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr15	51218504	51218505	chr15:51218505:T:A	rs1143704	T	A	T	Sox1_MA0870.1	4	1	-	7.001278908003458	0.2237006538332703	TACAATTGGATTGGT
chr15	51263302	51263303	chr15:51263303:T:C	rs34258629	T	C	T	Sox1_MA0870.1	4	1	+	3.8632847780210104	8.684050097565983	AACATTGACATTGGA
chr15	51322855	51322856	chr15:51322856:T:C	rs28757087	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr15	51329930	51329931	chr15:51329931:G:T	rs7174997	G	T	.	Sox1_MA0870.1	16	0	+	0	0	.
chr15	51329939	51329940	chr15:51329940:C:T	rs77487169	C	T	.	Sox1_MA0870.1	25	0	+	0	0	.
chr15	51379300	51379301	chr15:51379301:A:G	rs1870048	A	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr15	51672667	51672668	chr15:51672668:T:C	rs1378892	T	C	C	Sox1_MA0870.1	7	1	-	5.359336452826783	4.962358125030275	ATCAATAACGTTGCT
chr15	51879059	51879060	chr15:51879060:T:C	rs186215209	T	C	T	Sox1_MA0870.1	4	1	-	12.631556531571396	5.853978277401209	AACAATTCCATTGCC
chr15	52095896	52095897	chr15:52095897:A:T	rs115276207	A	T	A	Sox1_MA0870.1	21	0	+	0	0	.
chr15	52206162	52206163	chr15:52206163:G:A	rs4776016	G	A	A	Sox1_MA0870.1	6	1	+	11.038714515867404	12.57732120900812	CACACTGTCATTGTC
chr15	52484045	52484046	chr15:52484046:G:C	rs7168981	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr15	52484078	52484079	chr15:52484079:T:A	rs17707984	T	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr15	52798977	52798978	chr15:52798978:C:T	rs16965171	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr15	52798983	52798984	chr15:52798984:G:C	rs2456528	G	C	G	Sox1_MA0870.1	26	0	-	0	0	.
chr15	52878540	52878541	chr15:52878541:T:C	rs76969818	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr15	53204586	53204587	chr15:53204587:C:G	rs80135682	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr15	53271716	53271717	chr15:53271717:T:C	rs12912947	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr15	53360695	53360696	chr15:53360696:A:C	rs2036356	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr15	53448771	53448772	chr15:53448772:T:C	chr15:53448772:T:C	T	C	T	Sox1_MA0870.1	9	1	-	5.404390701481579	-1.504364077833642	GACAAAGACAGTGCT
chr15	53448792	53448793	chr15:53448793:T:G	rs78610270	T	G	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr15	53539992	53539993	chr15:53539993:G:A	rs12915842	G	A	g	Sox1_MA0870.1	0	1	-	7.302157546682631	6.599780789535151	CTCAATAATATTGTG
chr15	53746303	53746304	chr15:53746304:T:C	rs28549113	T	C	T	Sox1_MA0870.1	1	1	-	12.56808690045883	8.46979624506569	AACAATTCCAGTGTC
chr15	53746324	53746325	chr15:53746325:G:A	rs186021932	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr15	53851728	53851729	chr15:53851729:A:G	rs2414261	A	G	A	Sox1_MA0870.1	10	1	-	5.204301863199841	-1.6043952209364933	CACAATGCGATTGGA
chr15	54168309	54168310	chr15:54168310:C:T	rs11855361	C	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	55616004	55616005	chr15:55616005:T:C	rs491014	T	C	T	Sox1_MA0870.1	13	1	+	4.502585577981955	2.324930280530961	ACCTCTGTCATTGTT
chr15	55696339	55696340	chr15:55696340:A:G	rs16976479	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr15	55734929	55734930	chr15:55734930:A:G	rs79234996	A	G	A	Sox1_MA0870.1	5	1	-	3.959987557772645	-2.943177200875113	GATAATTGCAGTGTA
chr15	55786241	55786242	chr15:55786242:A:G	rs4288941	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr15	55786248	55786249	chr15:55786249:C:G	rs4300580	C	G	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	55798344	55798345	chr15:55798345:T:G	rs58598206	T	G	T	Sox1_MA0870.1	1	1	-	3.601129955642702	-0.16801042920179532	AACATTATCATGGTT
chr15	55848188	55848189	chr15:55848189:G:A	rs3759865	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr15	55912137	55912138	chr15:55912138:A:G	rs140022173	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr15	56052432	56052433	chr15:56052433:C:G	rs10518832	C	G	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr15	56093669	56093670	chr15:56093670:A:G	rs33984059	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr15	56240811	56240812	chr15:56240812:T:C	rs72740505	T	C	C	Sox1_MA0870.1	1	1	-	5.2905433079948825	1.192252652601741	GACAATAATATTATT
chr15	56280105	56280106	chr15:56280106:G:A	rs6493843	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr15	56381765	56381766	chr15:56381766:C:T	rs12898789	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr15	56866788	56866789	chr15:56866789:T:A	rs1660964	T	A	T	Sox1_MA0870.1	4	1	-	5.318090916820475	-1.4594873373497128	AATAATAAGATTGTG
chr15	56920274	56920275	chr15:56920275:G:A	rs191921657	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr15	57156787	57156788	chr15:57156788:C:T	rs8034502	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr15	57220804	57220805	chr15:57220805:T:A	rs2591062	T	A	T	Sox1_MA0870.1	23	0	+	0	0	.
chr15	57236558	57236559	chr15:57236559:A:G	rs72733941	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr15	57288924	57288925	chr15:57288925:A:G	rs78738069	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr15	57347437	57347438	chr15:57347438:G:T	rs139084834	G	T	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr15	57377427	57377428	chr15:57377428:A:G	rs75683540	A	G	A	Sox1_MA0870.1	10	1	-	7.900457049707171	1.0917599655708363	AAAAATTCCATTGTC
chr15	57390434	57390435	chr15:57390435:C:T	rs1664454	C	T	C	Sox1_MA0870.1	8	1	+	4.164099164602206	-0.017510382035077265	ACAAATTGCATTGTC
chr15	57463444	57463445	chr15:57463445:A:G	rs1280375	A	G	A	Sox1_MA0870.1	13	1	+	3.6481587285147614	3.351137028466847	GACAACTACATTGAC
chr15	57570459	57570460	chr15:57570460:C:T	rs79667171	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr15	57571140	57571141	chr15:57571141:T:A	rs80188716	T	A	T	Sox1_MA0870.1	19	0	+	0	0	.
chr15	57612627	57612628	chr15:57612628:T:C	rs12324526	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr15	57620370	57620371	chr15:57620371:A:G	rs28589756	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr15	57648063	57648064	chr15:57648064:T:C	rs2042698	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr15	57740534	57740535	chr15:57740535:A:G	rs16977653	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr15	57881452	57881453	chr15:57881453:C:A	rs2218259	C	A	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr15	58114996	58114997	chr15:58114997:G:A	rs2704210	G	A	G	Sox1_MA0870.1	14	1	+	10.548958467496302	10.373627230429257	CACAATATGATTGTG
chr15	58233681	58233682	chr15:58233682:T:C	rs1663252	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr15	58236175	58236176	chr15:58236176:A:G	rs8034953	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr15	58333563	58333564	chr15:58333564:C:A	rs8040955	C	A	C	Sox1_MA0870.1	12	1	+	4.023262013785589	4.023262013785589	GACAAAACCATTCTT
chr15	58499905	58499906	chr15:58499906:T:C	rs57783456	T	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr15	58786302	58786303	chr15:58786303:G:C	rs411007	G	C	c	Sox1_MA0870.1	27	0	-	0	0	.
chr15	59125389	59125390	chr15:59125390:C:T	rs28383569	C	T	C	Sox1_MA0870.1	8	1	+	6.8202921242166745	2.6386825775793925	CTCAAATGCATTGTT
chr15	59170597	59170598	chr15:59170598:C:A	rs12438396	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	59170631	59170632	chr15:59170632:T:C	rs528312257	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr15	59178807	59178808	chr15:59178808:T:C	rs150257931	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr15	59563008	59563009	chr15:59563009:A:G	rs12902469	A	G	G	Sox1_MA0870.1	4	1	+	5.365580331691967	-1.4119979224782222	AATAATTGCATTGCA
chr15	59563014	59563015	chr15:59563015:T:C	rs34805018	T	C	T	Sox1_MA0870.1	10	1	+	5.365580331691967	-1.4431167524443675	AATAATTGCATTGCA
chr15	59704807	59704808	chr15:59704808:A:G	rs17191002	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr15	59893032	59893033	chr15:59893033:C:T	rs11071494	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr15	60010603	60010604	chr15:60010604:C:A	rs1013373461	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr15	60076006	60076007	chr15:60076007:C:A	rs335810	C	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr15	60087123	60087124	chr15:60087124:T:C	rs59453829	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr15	60168265	60168266	chr15:60168266:C:G	rs8036508	C	G	G	Sox1_MA0870.1	11	1	+	3.5608893590469277	1.6135516580004294	AACAATAGCTTCGTA
chr15	60222983	60222984	chr15:60222984:G:C	rs8025467	G	C	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr15	60227364	60227365	chr15:60227365:A:C	rs75980329	A	C	A	Sox1_MA0870.1	29	0	-	0	0	.
chr15	60325699	60325700	chr15:60325700:G:A	rs2136554	G	A	G	Sox1_MA0870.1	2	1	-	4.161870307776894	-2.746884471538326	CACAAAAGCATTTTT
chr15	60395644	60395645	chr15:60395645:A:G	rs2100432	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	60606269	60606270	chr15:60606270:A:G	rs17303062	A	G	A	Sox1_MA0870.1	5	1	-	5.560762238571847	-1.3424025200759138	AACAATAGCATTTAC
chr15	60682308	60682309	chr15:60682309:G:C	rs150323374	G	C	G	Sox1_MA0870.1	21	0	+	0	0	.
chr15	60861351	60861352	chr15:60861352:T:C	rs10519085	T	C	T	Sox1_MA0870.1	11	1	+	7.6785027149809615	2.723107729170628	ACCACTTACATTGAT
chr15	60916967	60916968	chr15:60916968:G:T	rs553749137	G	T	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr15	60941862	60941863	chr15:60941863:C:T	rs11071573	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr15	61480351	61480352	chr15:61480352:T:G	rs56810547	T	G	T	Sox1_MA0870.1	10	1	+	5.183200487856052	2.9420755592924914	ATGACTAGCATTGTT
chr15	61606422	61606423	chr15:61606423:A:G	rs8035133	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr15	61715138	61715139	chr15:61715139:G:A	rs114059492	G	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr15	61791436	61791437	chr15:61791437:C:G	rs17238012	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr15	61821719	61821720	chr15:61821720:T:C	rs11853774	T	C	T	Sox1_MA0870.1	3	1	-	4.160306478068924	-2.7402831891283004	AACATTGACATTGAA
chr15	62269337	62269338	chr15:62269338:T:C	rs2037275	T	C	t	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	62365905	62365906	chr15:62365906:A:G	rs12594294	A	G	A	Sox1_MA0870.1	4	1	+	8.275226800812481	1.497648546642293	CACAATTCCACTGTT
chr15	62375347	62375348	chr15:62375348:T:C	rs290289	T	C	t	Sox1_MA0870.1	3	1	-	4.129959736552184	-2.770629930645042	CACACTGTCATTTTC
chr15	62413138	62413139	chr15:62413139:A:C	rs78261417	A	C	A	Sox1_MA0870.1	23	0	-	0	0	.
chr15	62424441	62424442	chr15:62424442:T:C	rs12911081	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr15	62527796	62527797	chr15:62527797:T:G	rs8030359	T	G	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr15	62645473	62645474	chr15:62645474:G:A	rs113560991	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr15	62758598	62758599	chr15:62758599:C:T	rs12324409	C	T	C	Sox1_MA0870.1	2	1	+	6.286481574655399	-0.6222732046598195	AGCACTTTCAGTGTG
chr15	62758599	62758600	chr15:62758600:A:G	rs7181066	A	G	A	Sox1_MA0870.1	3	1	+	6.286481574655399	-0.6141080925418246	AGCACTTTCAGTGTG
chr15	62758625	62758626	chr15:62758626:G:A	rs117787653	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr15	62833733	62833734	chr15:62833734:A:G	rs7165954	A	G	A	Sox1_MA0870.1	9	1	+	3.4472711548116197	-3.461483624503601	AACACATGCAGTGCC
chr15	62870327	62870328	chr15:62870328:T:C	rs595866	T	C	t	Sox1_MA0870.1	22	0	-	0	0	.
chr15	62896492	62896493	chr15:62896493:G:T	rs35446924	G	T	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr15	62906737	62906738	chr15:62906738:G:A	rs8030784	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr15	62932722	62932723	chr15:62932723:G:A	rs12915097	G	A	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr15	63053130	63053131	chr15:63053131:C:A	rs8030480	C	A	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	63176556	63176557	chr15:63176557:C:A	rs115631728	C	A	C	Sox1_MA0870.1	1	1	+	3.2397946594593976	7.008935044303897	CCCAAGAGCATTGCT
chr15	63195221	63195222	chr15:63195222:C:G	rs753891001	C	G	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr15	63274502	63274503	chr15:63274503:A:C	rs1017546	A	C	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr15	63454652	63454653	chr15:63454653:A:T	rs11632615	A	T	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr15	63487456	63487457	chr15:63487457:G:A	rs373060670	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr15	63521444	63521445	chr15:63521445:G:A	rs7174884	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr15	63551703	63551704	chr15:63551704:G:A	rs75569079	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr15	63552847	63552848	chr15:63552848:G:A	rs62011343	G	A	G	Sox1_MA0870.1	6	1	+	5.4012686993831505	6.939875392523868	CAGAATGGCAGTGTT
chr15	64141696	64141697	chr15:64141697:G:T	rs7176480	G	T	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	64224700	64224701	chr15:64224701:A:G	rs147237107	A	G	A	Sox1_MA0870.1	7	1	-	4.706759820336479	4.718588872884852	AACAAGATGATTGTA
chr15	64522093	64522094	chr15:64522094:G:A	rs673931	G	A	A	Sox1_MA0870.1	30	0	+	0	0	.
chr15	64746715	64746716	chr15:64746716:T:C	chr15:64746716:T:C	T	C	T	Sox1_MA0870.1	10	1	+	4.0199793332378295	-2.7887177508985026	GACAAACTCATTGTC
chr15	64836392	64836393	chr15:64836393:A:G	rs55942307	A	G	A	Sox1_MA0870.1	7	1	-	4.739673557413887	4.751502609962261	AACAAAATGAGTGTC
chr15	65411286	65411287	chr15:65411287:C:G	rs34355056	C	G	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr15	65655285	65655286	chr15:65655286:T:C	chr15:65655286:T:C	T	C	T	Sox1_MA0870.1	1	1	-	8.906288265161004	4.807997609767865	AAAAATAGCATTGTC
chr15	65682597	65682598	chr15:65682598:T:C	rs7181632	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr15	65798346	65798347	chr15:65798347:C:A	rs2727096	C	A	A	Sox1_MA0870.1	19	0	-	0	0	.
chr15	66100184	66100185	chr15:66100185:G:A	rs62011846	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr15	66177651	66177652	chr15:66177652:C:T	rs1382052	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	66239592	66239593	chr15:66239593:A:G	rs12324491	A	G	G	Sox1_MA0870.1	6	1	+	5.683643974547747	4.1450372814070295	ACCACTACCAGTGGT
chr15	66329007	66329008	chr15:66329008:A:G	rs17258507	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr15	66404396	66404397	chr15:66404397:A:C	rs1549854	A	C	A	Sox1_MA0870.1	25	0	+	0	0	.
chr15	66490922	66490923	chr15:66490923:C:A	rs14303	C	A	C	Sox1_MA0870.1	2	1	+	5.427977245953542	-1.4807775333616795	TACAATTGCACTGCT
chr15	66503598	66503599	chr15:66503599:C:T	rs28673176	C	T	C	Sox1_MA0870.1	2	1	+	5.137975818528571	-1.7707789607866515	AACAATACCATTAAA
chr15	66589209	66589210	chr15:66589210:C:T	rs35927347	C	T	c	Sox1_MA0870.1	20	0	+	0	0	.
chr15	66926606	66926607	chr15:66926607:A:G	rs1965269	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr15	67003748	67003749	chr15:67003749:A:G	rs446304	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr15	67007585	67007586	chr15:67007586:T:C	rs438265	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr15	67007591	67007592	chr15:67007592:T:C	rs403542	T	C	C	Sox1_MA0870.1	9	1	-	7.644506411064551	0.7357516317493298	AACTCTACCATTGCT
chr15	67007592	67007593	chr15:67007593:G:A	rs4776869	G	A	A	Sox1_MA0870.1	8	1	-	7.644506411064551	3.4628968644272677	AACTCTACCATTGCT
chr15	67026273	67026274	chr15:67026274:T:C	rs8031538	T	C	C	Sox1_MA0870.1	13	1	+	6.113711170944274	3.9360558734932805	GGCACTATGATTGTT
chr15	67133235	67133236	chr15:67133236:T:A	rs10163132	T	A	T	Sox1_MA0870.1	26	0	+	0	0	.
chr15	67149527	67149528	chr15:67149528:C:G	rs2033785	C	G	C	Sox1_MA0870.1	4	1	+	7.9055488753950485	3.084783555850076	CACCCTGACATTGTT
chr15	67198935	67198936	chr15:67198936:C:A	rs12917612	C	A	C	Sox1_MA0870.1	20	0	-	0	0	.
chr15	67465887	67465888	chr15:67465888:A:G	rs2414958	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr15	67736022	67736023	chr15:67736023:G:A	rs9888652	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr15	68227516	68227517	chr15:68227517:G:A	rs8037724	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr15	68313364	68313365	chr15:68313365:T:C	rs7174916	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr15	68440653	68440654	chr15:68440654:C:G	rs2415015	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr15	68609967	68609968	chr15:68609968:T:C	rs12904875	T	C	T	Sox1_MA0870.1	1	1	-	4.8588176925830595	0.7605270371899173	CACAATTACAGGGTC
chr15	68734645	68734646	chr15:68734646:G:C	rs16952498	G	C	G	Sox1_MA0870.1	5	1	+	4.1250776329817604	4.1250776329817604	ACCAAGTTCATTGTC
chr15	68946105	68946106	chr15:68946106:G:A	rs3743093	G	A	A	Sox1_MA0870.1	1	1	-	6.3304452966633455	6.822301434346704	CCCAATGCCAGTGCT
chr15	69082498	69082499	chr15:69082499:A:G	rs114455428	A	G	A	Sox1_MA0870.1	13	1	-	7.395999324474892	5.218344027023899	TACTATTACATTGTA
chr15	69652119	69652120	chr15:69652120:G:T	rs7170391	G	T	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr15	69732344	69732345	chr15:69732345:G:A	rs12916868	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr15	69853072	69853073	chr15:69853073:C:G	rs305007	C	G	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr15	69891681	69891682	chr15:69891682:G:T	rs12909744	G	T	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr15	69913615	69913616	chr15:69913616:A:G	rs2601891	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr15	69953253	69953254	chr15:69953254:A:T	rs61999900	A	T	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr15	70024221	70024222	chr15:70024222:C:T	rs150884814	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr15	70046097	70046098	chr15:70046098:A:G	rs149835428	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	70091277	70091278	chr15:70091278:T:C	rs658279	T	C	C	Sox1_MA0870.1	5	1	+	4.41529919819923	-2.487865560448529	AAAAATGTCAGTGCT
chr15	70102111	70102112	chr15:70102112:C:T	rs904970	C	T	T	Sox1_MA0870.1	0	1	+	2.927801816047224	2.2254250588997437	CCCAATTGCTTTGTC
chr15	70111264	70111265	chr15:70111265:T:A	rs34950331	T	A	T	Sox1_MA0870.1	7	1	+	6.195549461912213	6.637139341996628	GGCACTATCATTGCC
chr15	70116613	70116614	chr15:70116614:C:T	rs17759653	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr15	70120423	70120424	chr15:70120424:C:T	rs61999942	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	70257292	70257293	chr15:70257293:C:A	rs34508749	C	A	A	Sox1_MA0870.1	30	0	+	0	0	.
chr15	70267367	70267368	chr15:70267368:G:C	rs2668608	G	C	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	70323906	70323907	chr15:70323907:A:G	rs1212420971	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr15	70328257	70328258	chr15:70328258:G:A	rs534593743	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr15	70419507	70419508	chr15:70419508:C:T	rs116882112	C	T	C	Sox1_MA0870.1	2	1	+	5.680395482241273	-1.228359297073946	CACACTACCATTCTC
chr15	70437850	70437851	chr15:70437851:G:A	rs139662466	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr15	70464617	70464618	chr15:70464618:C:T	rs4412933	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr15	70474414	70474415	chr15:70474415:T:C	rs62001748	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr15	70494387	70494388	chr15:70494388:G:A	rs56179949	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr15	70610478	70610479	chr15:70610479:T:C	rs114365334	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr15	70632897	70632898	chr15:70632898:G:T	rs74023351	G	T	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr15	71225895	71225896	chr15:71225896:A:T	rs925759	A	T	A	Sox1_MA0870.1	11	1	-	7.48436654702684	0.5816338601700095	TACAATGTCAGTGCA
chr15	71460119	71460120	chr15:71460120:A:G	rs4332701	A	G	a	Sox1_MA0870.1	1	1	+	3.2727102782652575	-0.8255803771278837	CACGATACCAGTGGT
chr15	71526087	71526088	chr15:71526088:A:G	rs28572549	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr15	71549914	71549915	chr15:71549915:G:A	rs71395020	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr15	71549936	71549937	chr15:71549937:T:C	rs71395021	T	C	C	Sox1_MA0870.1	3	1	-	4.199530863099103	-2.701058804098122	AGCACTGACAGTGCC
chr15	71707470	71707471	chr15:71707471:C:G	rs117267429	C	G	C	Sox1_MA0870.1	2	1	+	3.911111238791158	-2.9976435405240625	AACAAGAACATTATT
chr15	71789844	71789845	chr15:71789845:C:T	rs7497228	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	71962907	71962908	chr15:71962908:C:T	rs8040216	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	72201054	72201055	chr15:72201055:C:T	rs78020492	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr15	72201406	72201407	chr15:72201407:G:A	rs3825949	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr15	72490537	72490538	chr15:72490538:C:T	rs12912445	C	T	C	Sox1_MA0870.1	0	1	-	4.325671198436745	5.667794341243497	GACAATAACAATGAA
chr15	72588332	72588333	chr15:72588333:C:T	rs17753089	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr15	72702222	72702223	chr15:72702223:A:G	rs34661924	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr15	72873589	72873590	chr15:72873590:C:T	rs28540169	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr15	72964171	72964172	chr15:72964172:C:T	rs1839271	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr15	73232903	73232904	chr15:73232904:G:A	rs138528430	G	A	.	Sox1_MA0870.1	29	0	-	0	0	.
chr15	73342240	73342241	chr15:73342241:G:A	rs77688257	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr15	73763883	73763884	chr15:73763884:T:C	rs7172656	T	C	T	Sox1_MA0870.1	10	1	+	4.234181264255836	-2.574515819880497	CACTATTGCATTGGG
chr15	73932654	73932655	chr15:73932655:G:A	rs4886776	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr15	73994483	73994484	chr15:73994484:G:A	rs901700081	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr15	74239676	74239677	chr15:74239677:T:C	rs3848162	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr15	74239694	74239695	chr15:74239695:G:A	rs3848163	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr15	74363241	74363242	chr15:74363242:A:G	rs7174179	A	G	G	Sox1_MA0870.1	11	1	-	4.611343749997657	-0.3440512358126775	ATCAATTTCTTTGTC
chr15	74580404	74580405	chr15:74580405:G:A	rs4887163	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr15	74638060	74638061	chr15:74638061:A:G	rs75388839	A	G	A	Sox1_MA0870.1	0	1	+	7.54950165726734	6.207378514460586	AGCACTACCATTGCC
chr15	74664535	74664536	chr15:74664536:G:C	chr15:74664536:G:C	G	C	G	Sox1_MA0870.1	22	0	-	0	0	.
chr15	74844352	74844353	chr15:74844353:T:C	rs12487	T	C	T	Sox1_MA0870.1	4	1	-	3.2646866444226244	-3.5128916097475624	TACAATGCCGTTGGT
chr15	75056620	75056621	chr15:75056621:G:C	rs7175720	G	C	G	Sox1_MA0870.1	22	0	-	0	0	.
chr15	75848144	75848145	chr15:75848145:A:G	rs28550045	A	G	.	Sox1_MA0870.1	31	0	-	0	0	.
chr15	76541437	76541438	chr15:76541438:C:T	rs157768	C	T	C	Sox1_MA0870.1	12	1	-	5.097897569612323	-1.8108572097028968	AACTATACCATCGTG
chr15	77145554	77145555	chr15:77145555:T:C	rs12917081	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr15	77357283	77357284	chr15:77357284:T:A	rs1949269	T	A	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	77421243	77421244	chr15:77421244:A:G	rs34591043	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr15	77440740	77440741	chr15:77440741:A:G	rs74026913	A	G	A	Sox1_MA0870.1	9	1	+	6.149332948681687	-0.7594218306335344	CTCACTTTCATTGCC
chr15	77568589	77568590	chr15:77568590:T:G	rs113809754	T	G	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr15	77574821	77574822	chr15:77574822:G:A	rs2667780	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	77630729	77630730	chr15:77630730:A:G	rs1877298	A	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr15	77801555	77801556	chr15:77801556:T:C	rs4075024	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr15	77908251	77908252	chr15:77908252:G:A	rs4325522	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr15	77908294	77908295	chr15:77908295:C:T	rs146750594	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr15	77941750	77941751	chr15:77941751:C:G	rs112736682	C	G	-	Sox1_MA0870.1	31	0	-	0	0	.
chr15	77941754	77941755	chr15:77941755:G:A	rs117931496	G	A	-	Sox1_MA0870.1	27	0	-	0	0	.
chr15	78000737	78000738	chr15:78000738:C:T	rs74027705	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr15	78035717	78035718	chr15:78035718:C:T	rs74463885	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr15	78105803	78105804	chr15:78105804:G:A	rs10456	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr15	78215275	78215276	chr15:78215276:G:A	rs118042195	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr15	78267594	78267595	chr15:78267595:T:C	rs12442418	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	78305023	78305024	chr15:78305024:T:A	rs12910757	T	A	T	Sox1_MA0870.1	25	0	+	0	0	.
chr15	78358872	78358873	chr15:78358873:G:A	rs4887042	G	A	A	Sox1_MA0870.1	2	1	-	6.300694401722797	-0.6080603775924228	CTCAATAACATTTTT
chr15	78358892	78358893	chr15:78358893:C:T	rs4887043	C	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr15	78487041	78487042	chr15:78487042:C:T	rs12904234	C	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr15	78599284	78599285	chr15:78599285:G:A	rs12910984	G	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr15	78642208	78642209	chr15:78642209:G:A	rs3813567	G	A	-	Sox1_MA0870.1	-5	0	+	0	0	.
chr15	78677015	78677016	chr15:78677016:T:C	rs76507625	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr15	78677042	78677043	chr15:78677043:T:G	rs4886580	T	G	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr15	78727809	78727810	chr15:78727810:C:G	rs35583595	C	G	-	Sox1_MA0870.1	-7	0	-	0	0	.
chr15	78740729	78740730	chr15:78740730:A:G	rs113991567	A	G	N	Sox1_MA0870.1	14	1	-	6.163671059682732	4.652661655201328	ATCACTATCAGTGGT
chr15	78819174	78819175	chr15:78819175:A:G	rs11072807	A	G	a	Sox1_MA0870.1	11	1	-	8.708330724309043	3.7529357384987097	CACACTTCCAGTGCT
chr15	78874917	78874918	chr15:78874918:T:C	rs77362013	T	C	T	Sox1_MA0870.1	9	1	-	5.842994321510362	-1.0657604578048585	AGCAATTACACTGTT
chr15	78874938	78874939	chr15:78874939:C:T	rs77957002	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr15	78943720	78943721	chr15:78943721:A:G	rs73472313	A	G	A	Sox1_MA0870.1	9	1	+	3.118758356944925	-3.789996422370296	CACACTACCATGGCA
chr15	79068032	79068033	chr15:79068033:A:G	rs72732673	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr15	79096950	79096951	chr15:79096951:C:T	rs78496982	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr15	79191740	79191741	chr15:79191741:T:G	rs8028654	T	G	t	Sox1_MA0870.1	23	0	-	0	0	.
chr15	79244417	79244418	chr15:79244418:T:C	rs4147510	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr15	79500015	79500016	chr15:79500016:A:G	rs11857896	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr15	79547568	79547569	chr15:79547569:C:T	rs7181421	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr15	79762616	79762617	chr15:79762617:A:G	rs28621503	A	G	-	Sox1_MA0870.1	10	1	-	4.039425692216879	-2.7692713919194545	GTCAATACCCTTGTG
chr15	79773207	79773208	chr15:79773208:C:T	rs62026584	C	T	C	Sox1_MA0870.1	7	1	-	7.449550134296439	7.846528462092948	GACAATAGCAATGTG
chr15	79844489	79844490	chr15:79844490:G:A	rs35083796	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr15	79886269	79886270	chr15:79886270:T:A	rs2733107	T	A	T	Sox1_MA0870.1	22	0	-	0	0	.
chr15	79886309	79886310	chr15:79886310:T:C	rs62027997	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr15	79942856	79942857	chr15:79942857:A:T	rs79858113	A	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr15	79988460	79988461	chr15:79988461:C:T	rs3852638	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr15	80036582	80036583	chr15:80036583:G:T	chr15:80036583:G:T	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr15	80058826	80058827	chr15:80058827:T:C	rs2461649	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	80174506	80174507	chr15:80174507:T:G	rs78157034	T	G	T	Sox1_MA0870.1	31	0	-	0	0	.
chr15	80182677	80182678	chr15:80182678:A:G	rs60797290	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr15	80193821	80193822	chr15:80193822:T:A	rs1437222	T	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr15	80484251	80484252	chr15:80484252:A:G	rs61144989	A	G	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr15	80503667	80503668	chr15:80503668:T:C	rs28687121	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr15	80550732	80550733	chr15:80550733:A:T	rs557737716	A	T	A	Sox1_MA0870.1	13	1	-	3.9779114173256445	0.6323853907364855	AGCACAACCAGTGTT
chr15	80558150	80558151	chr15:80558151:A:G	rs7168037	A	G	G	Sox1_MA0870.1	5	1	-	4.384128780976851	-2.5190359776709075	GACAATATGAGTGGA
chr15	80597598	80597599	chr15:80597599:A:G	rs1139650	A	G	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr15	80613208	80613209	chr15:80613209:C:A	rs11072926	C	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr15	80619876	80619877	chr15:80619877:C:G	rs62007863	C	G	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr15	80673977	80673978	chr15:80673978:C:T	rs11637805	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr15	80732789	80732790	chr15:80732790:A:G	rs12916634	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr15	80811445	80811446	chr15:80811446:A:G	rs73497055	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr15	80918384	80918385	chr15:80918385:T:A	rs4778868	T	A	A	Sox1_MA0870.1	3	1	-	4.043236639833399	-1.4710586662439376	AAAAATTCCATTGGG
chr15	80986348	80986349	chr15:80986349:T:C	rs11072970	T	C	T	Sox1_MA0870.1	10	1	+	5.397162222379028	-1.4115348617573058	CTCTATAGCATTGTA
chr15	81000242	81000243	chr15:81000243:A:G	rs144166198	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr15	81027576	81027577	chr15:81027577:A:G	rs77837777	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr15	81239401	81239402	chr15:81239402:G:A	rs74030042	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr15	81265884	81265885	chr15:81265885:C:G	rs148220843	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr15	81318560	81318561	chr15:81318561:T:C	rs4617815	T	C	C	Sox1_MA0870.1	10	1	+	3.8102131171290914	-2.9984839670072416	GTCACTGCCATTGGG
chr15	81335386	81335387	chr15:81335387:A:G	rs61112061	A	G	A	Sox1_MA0870.1	10	1	-	15.815043044476226	9.006345960339893	AACAATAGCATTGTC
chr15	81335393	81335394	chr15:81335394:T:C	rs116750573	T	C	T	Sox1_MA0870.1	3	1	-	15.815043044476226	8.914453377279001	AACAATAGCATTGTC
chr15	81362195	81362196	chr15:81362196:C:T	rs7164804	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr15	81401428	81401429	chr15:81401429:G:A	rs115681804	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr15	81410479	81410480	chr15:81410480:G:T	rs967376194	G	T	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr15	81410511	81410512	chr15:81410512:C:G	rs12101997	C	G	C	Sox1_MA0870.1	21	0	+	0	0	.
chr15	81419717	81419718	chr15:81419718:C:T	rs77846214	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr15	82095609	82095610	chr15:82095610:G:C	rs1969090	G	C	C	Sox1_MA0870.1	13	1	-	11.324053977514449	9.859161548328371	AACAATGTCAGTGCT
chr15	82133523	82133524	chr15:82133524:A:G	rs66904072	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr15	82136255	82136256	chr15:82136256:C:A	rs77541858	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr15	82179984	82179985	chr15:82179985:C:T	rs8041868	C	T	T	Sox1_MA0870.1	4	1	+	4.000927631743137	-0.819837687801835	AAAACTAACATTGAC
chr15	82309437	82309438	chr15:82309438:G:A	rs34453510	G	A	g	Sox1_MA0870.1	-12	0	-	0	0	.
chr15	83100242	83100243	chr15:83100243:T:C	rs67988460	T	C	T	Sox1_MA0870.1	13	1	+	7.612815644246263	5.43516034679527	CACTCTTCCATTGTT
chr15	83306063	83306064	chr15:83306064:A:G	rs369775007	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr15	83410536	83410537	chr15:83410537:A:G	rs2399140	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr15	83559359	83559360	chr15:83559360:C:T	rs1454402581	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr15	83559403	83559404	chr15:83559404:G:T	rs75100108	G	T	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	83793879	83793880	chr15:83793880:C:G	rs79007383	C	G	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr15	83835726	83835727	chr15:83835727:A:G	rs12443111	A	G	A	Sox1_MA0870.1	10	1	-	4.746151358724896	-2.0625457254114385	CACACTTGCATGGTC
chr15	83972265	83972266	chr15:83972266:T:G	rs12148239	T	G	T	Sox1_MA0870.1	4	1	+	4.0366977432687285	4.0366977432687285	AACATTAACATTTTT
chr15	84597562	84597563	chr15:84597563:C:T	rs7176527	C	T	C	Sox1_MA0870.1	10	1	-	5.966826676809568	1.3992545212367942	CACAATTGCCGTGTT
chr15	84611917	84611918	chr15:84611918:A:T	rs184043820	A	T	A	Sox1_MA0870.1	27	0	+	0	0	.
chr15	84714367	84714368	chr15:84714368:G:A	rs34900908	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr15	84715384	84715385	chr15:84715385:C:A	rs556905744	C	A	C	Sox1_MA0870.1	34	0	-	0	0	.
chr15	84742304	84742305	chr15:84742305:T:C	rs17599989	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	84821284	84821285	chr15:84821285:C:T	rs2115630	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr15	85164909	85164910	chr15:85164910:A:G	rs6496775	A	G	a	Sox1_MA0870.1	13	1	-	5.762821052568597	3.585165755117604	GACACTGTCATCGTG
chr15	85327815	85327816	chr15:85327816:T:C	rs8037070	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr15	85343667	85343668	chr15:85343668:T:C	rs76520652	T	C	T	Sox1_MA0870.1	6	1	-	9.03056297454775	7.491956281407031	GACAATATCATTTTT
chr15	85379357	85379358	chr15:85379358:G:C	rs7496211	G	C	G	Sox1_MA0870.1	21	0	-	0	0	.
chr15	85379384	85379385	chr15:85379385:T:G	rs12595503	T	G	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr15	85383314	85383315	chr15:85383315:C:T	rs7180683	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr15	85486154	85486155	chr15:85486155:T:C	chr15:85486155:T:C	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr15	85559144	85559145	chr15:85559145:G:C	rs2344437	G	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr15	85648297	85648298	chr15:85648298:G:T	rs374885	G	T	T	Sox1_MA0870.1	8	1	-	6.112530376756606	0.2193607224383921	GACACTTCCATTTTT
chr15	85648323	85648324	chr15:85648324:C:G	rs408243	C	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr15	85689777	85689778	chr15:85689778:G:C	rs7181796	G	C	G	Sox1_MA0870.1	1	1	-	3.7316560137624606	3.402505743213818	CCCAAAAACAGTGTG
chr15	85782892	85782893	chr15:85782893:A:C	rs12916187	A	C	A	Sox1_MA0870.1	9	1	+	4.76767772924954	-2.1410770500656793	CTCAAGGACATTGTT
chr15	85798887	85798888	chr15:85798888:A:G	rs72753626	A	G	A	Sox1_MA0870.1	5	1	-	4.18141182844648	-2.721752930201278	GAAAATGACAGTGTC
chr15	85897814	85897815	chr15:85897815:C:T	rs117695966	C	T	C	Sox1_MA0870.1	12	1	-	5.27040418517854	-1.6383505941366798	TCCAAAAACATTGTG
chr15	86161990	86161991	chr15:86161991:T:A	rs569223852	T	A	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr15	86783103	86783104	chr15:86783104:T:A	rs16977979	T	A	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr15	86878371	86878372	chr15:86878372:G:A	rs62032641	G	A	G	Sox1_MA0870.1	12	1	+	5.3653851565923425	-1.5433696227228784	AACAAAACCTTTGTT
chr15	86906115	86906116	chr15:86906116:A:T	rs112539737	A	T	A	Sox1_MA0870.1	32	0	+	0	0	.
chr15	87356466	87356467	chr15:87356467:G:A	rs72749815	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr15	87447148	87447149	chr15:87447149:C:T	rs28616247	C	T	C	Sox1_MA0870.1	13	1	-	3.6181784482705615	3.9152001483184753	GACATTATCATTGGA
chr15	87609468	87609469	chr15:87609469:G:A	rs56382305	G	A	A	Sox1_MA0870.1	4	1	-	5.026454737758788	0.20568941821381603	AACACGGGCATTGTA
chr15	87609468	87609469	chr15:87609469:G:T	chr15:87609469:G:T	G	T	A	Sox1_MA0870.1	4	1	-	5.026454737758788	6.983267672384005	AACACGGGCATTGTA
chr15	87609480	87609481	chr15:87609481:C:G	rs10852088	C	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr15	87827359	87827360	chr15:87827360:T:C	rs1006113640	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr15	88048298	88048299	chr15:88048299:C:A	rs28565987	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr15	88191114	88191115	chr15:88191115:T:C	rs11852633	T	C	A	Sox1_MA0870.1	7	1	+	5.348067952204429	5.359897004752803	GACACTATCATTATG
chr15	88375186	88375187	chr15:88375187:C:A	rs118045359	C	A	C	Sox1_MA0870.1	30	0	-	0	0	.
chr15	88375202	88375203	chr15:88375203:A:G	rs74028002	A	G	A	Sox1_MA0870.1	14	1	-	4.188779646050734	2.6777702415693296	CACAATCACATTCTT
chr15	88543421	88543422	chr15:88543422:A:T	rs9920066	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr15	88728209	88728210	chr15:88728210:A:G	rs77659506	A	G	A	Sox1_MA0870.1	14	1	-	4.277426967581105	2.7664175630997003	ATCACTTCCAATGTT
chr15	88787118	88787119	chr15:88787119:G:A	rs7495010	G	A	A	Sox1_MA0870.1	20	0	-	0	0	.
chr15	88936930	88936931	chr15:88936931:T:C	rs35760425	T	C	T	Sox1_MA0870.1	5	1	+	4.862425578783969	-2.0407391798637904	CACAATTGCATTCAT
chr15	89039480	89039481	chr15:89039481:T:C	rs72759045	T	C	t	Sox1_MA0870.1	-1	0	+	0	0	.
chr15	89071898	89071899	chr15:89071899:A:G	rs9920084	A	G	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr15	89091182	89091183	chr15:89091183:G:C	rs293377	G	C	C	Sox1_MA0870.1	4	1	-	3.2910211770369253	-1.5297441425080462	CACACTGAGAGTGCC
chr15	89660228	89660229	chr15:89660229:G:T	rs76478344	G	T	G	Sox1_MA0870.1	2	1	-	4.46279934336605	-2.44595543594917	GACATTTGGATTGTT
chr15	89675537	89675538	chr15:89675538:C:T	rs8179060	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	89791008	89791009	chr15:89791009:A:G	rs25654	A	G	G	Sox1_MA0870.1	3	1	+	4.270231570898719	-2.630358096298505	CCCAATGACGTTGTT
chr15	89898336	89898337	chr15:89898337:C:A	rs8033554	C	A	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr15	89898573	89898574	chr15:89898574:T:G	rs3803535	T	G	T	Sox1_MA0870.1	24	0	+	0	0	.
chr15	90019702	90019703	chr15:90019703:G:A	rs11856707	G	A	g	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	90035220	90035221	chr15:90035221:G:A	rs4932276	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr15	90113416	90113417	chr15:90113417:C:T	rs59337025	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr15	90231754	90231755	chr15:90231755:G:A	rs2073704	G	A	g	Sox1_MA0870.1	8	1	-	4.747103673759271	0.5654941271219887	CACACTTACGTTGTA
chr15	90348382	90348383	chr15:90348383:G:A	rs6496665	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr15	90408283	90408284	chr15:90408284:T:C	rs10520688	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr15	90443068	90443069	chr15:90443069:C:T	rs62020727	C	T	C	Sox1_MA0870.1	4	1	-	3.6551710894258647	10.432749343596052	GACAGTAAGATTGCT
chr15	90602032	90602033	chr15:90602033:G:A	rs8026218	G	A	A	Sox1_MA0870.1	4	1	-	3.2004308402045414	-1.6203344793404293	AACACTGCCATTCCC
chr15	90625743	90625744	chr15:90625744:T:C	rs3743405	T	C	T	Sox1_MA0870.1	13	1	+	4.718575195292902	2.5409198978419085	GCCAAATACATTGTA
chr15	90766093	90766094	chr15:90766094:G:A	rs3784781	G	A	.	Sox1_MA0870.1	-10	0	+	0	0	.
chr15	90932043	90932044	chr15:90932044:G:A	rs34967259	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr15	91051724	91051725	chr15:91051725:C:T	rs6496755	C	T	c	Sox1_MA0870.1	2	1	+	6.74655131020341	-0.16220346911181027	ACCATTACCATTGTT
chr15	91376975	91376976	chr15:91376976:T:C	rs7174162	T	C	T	Sox1_MA0870.1	5	1	+	8.372137124954428	1.4689723663066685	AACTATGGCATTGTA
chr15	91426304	91426305	chr15:91426305:C:A	rs4244890	C	A	A	Sox1_MA0870.1	2	1	+	5.1291044223487905	-1.7796503569664304	GCCTATGCCATTGTT
chr15	91469693	91469694	chr15:91469694:G:A	rs7176401	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr15	91530026	91530027	chr15:91530027:A:G	rs4380038	A	G	a	Sox1_MA0870.1	5	1	-	5.691473490540552	-1.211691268107208	TACTATAGTATTGTT
chr15	91536802	91536803	chr15:91536803:A:C	rs1323925117	A	C	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	91538210	91538211	chr15:91538211:G:A	rs7498047	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr15	91776080	91776081	chr15:91776081:T:G	rs12914693	T	G	-	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	91874634	91874635	chr15:91874635:C:T	rs35419421	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr15	92020854	92020855	chr15:92020855:G:A	rs8037164	G	A	g	Sox1_MA0870.1	-20	0	+	0	0	.
chr15	92128025	92128026	chr15:92128026:A:G	rs2190750	A	G	A	Sox1_MA0870.1	0	1	+	8.429334746904237	7.087211604097483	ATCAATACCAGTGAT
chr15	92155412	92155413	chr15:92155413:G:C	rs960440	G	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr15	92155453	92155454	chr15:92155454:G:A	rs768882	G	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr15	92192496	92192497	chr15:92192497:C:T	rs73546343	C	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr15	92199516	92199517	chr15:92199517:C:G	rs7174969	C	G	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr15	92223048	92223049	chr15:92223049:A:G	rs8037091	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr15	92320436	92320437	chr15:92320437:A:G	rs12592183	A	G	G	Sox1_MA0870.1	9	1	+	8.499104138917861	1.5903493596026408	GAGAATTACATTGTT
chr15	92338475	92338476	chr15:92338476:A:T	rs12324208	A	T	T	Sox1_MA0870.1	16	0	+	0	0	.
chr15	92372205	92372206	chr15:92372206:G:A	rs7181423	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr15	92451578	92451579	chr15:92451579:A:G	rs988965965	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr15	92546108	92546109	chr15:92546109:C:T	rs1378599	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr15	92575135	92575136	chr15:92575136:T:A	rs417297	T	A	T	Sox1_MA0870.1	17	0	+	0	0	.
chr15	92632967	92632968	chr15:92632968:C:T	rs12908630	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr15	92676485	92676486	chr15:92676486:G:C	rs285720	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr15	92908485	92908486	chr15:92908486:G:A	rs1898914	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr15	92928725	92928726	chr15:92928726:T:C	rs80102684	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr15	93111443	93111444	chr15:93111444:C:A	rs8025252	C	A	C	Sox1_MA0870.1	27	0	+	0	0	.
chr15	93141416	93141417	chr15:93141417:A:C	rs112856312	A	C	A	Sox1_MA0870.1	17	0	+	0	0	.
chr15	93250323	93250324	chr15:93250324:T:C	rs936677	T	C	C	Sox1_MA0870.1	10	1	+	9.260604940893945	2.4519078567576114	ATCAATTTGATTGTT
chr15	93274522	93274523	chr15:93274523:A:C	chr15:93274523:A:C	A	C	a	Sox1_MA0870.1	28	0	-	0	0	.
chr15	93278110	93278111	chr15:93278111:C:A	rs4777809	C	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr15	93284868	93284869	chr15:93284869:C:T	rs4777643	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr15	93320237	93320238	chr15:93320238:C:T	rs17541104	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	93477507	93477508	chr15:93477508:T:A	rs72758037	T	A	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr15	93488231	93488232	chr15:93488232:G:A	rs56699134	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr15	93717180	93717181	chr15:93717181:A:G	rs12148916	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr15	93829390	93829391	chr15:93829391:A:C	rs12437481	A	C	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr15	93943245	93943246	chr15:93943246:A:G	rs11855197	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr15	94120201	94120202	chr15:94120202:A:C	rs6497171	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr15	94120208	94120209	chr15:94120209:T:C	rs6497172	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	94442160	94442161	chr15:94442161:C:T	rs117441412	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr15	94541317	94541318	chr15:94541318:A:T	rs11858595	A	T	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr15	94602404	94602405	chr15:94602405:C:T	rs12913190	C	T	C	Sox1_MA0870.1	13	1	+	7.2039257499607245	9.381581047411718	GACAAAGTCATTGCT
chr15	94610090	94610091	chr15:94610091:C:G	rs4353444	C	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr15	94779181	94779182	chr15:94779182:T:A	rs8039898	T	A	T	Sox1_MA0870.1	20	0	-	0	0	.
chr15	94889271	94889272	chr15:94889272:A:C	rs4372639	A	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr15	95121455	95121456	chr15:95121456:A:G	rs1379818	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr15	95368793	95368794	chr15:95368794:G:A	rs8040863	G	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr15	95464858	95464859	chr15:95464859:T:G	chr15:95464859:T:G	T	G	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr15	95608684	95608685	chr15:95608685:C:T	rs10520792	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	95644575	95644576	chr15:95644576:C:T	rs17504636	C	T	C	Sox1_MA0870.1	12	1	-	5.21983836737418	-1.6889164119410403	TAAAATTTCAGTGTT
chr15	95880654	95880655	chr15:95880655:C:T	rs74533182	C	T	T	Sox1_MA0870.1	31	0	+	0	0	.
chr15	96050104	96050105	chr15:96050105:T:C	rs12914967	T	C	T	Sox1_MA0870.1	9	1	-	4.211517051971456	-2.6972377273437638	GAGACTTCCATTGTA
chr15	96234697	96234698	chr15:96234698:C:G	rs2577020	C	G	C	Sox1_MA0870.1	2	1	+	5.806055391792512	-1.1026993875227107	GTCGATAGCATTGTT
chr15	96327587	96327588	chr15:96327588:A:G	rs3743462	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr15	96335004	96335005	chr15:96335005:C:T	rs2005636	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr15	96347980	96347981	chr15:96347981:T:C	rs28373067	T	C	T	Sox1_MA0870.1	1	1	+	5.650625371542587	5.158769233859228	GTCACTAAGATTGTG
chr15	96349383	96349384	chr15:96349384:C:G	rs34005657	C	G	G	Sox1_MA0870.1	12	1	-	4.567395007574017	-2.341359771741204	CACAAACACATTGTC
chr15	96364436	96364437	chr15:96364437:A:G	rs12442624	A	G	A	Sox1_MA0870.1	9	1	+	4.773325456092212	-2.1354293232230073	AACACTATCATTTGT
chr15	96410861	96410862	chr15:96410862:G:A	rs7170620	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr15	96786535	96786536	chr15:96786536:T:C	rs28506996	T	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr15	96807666	96807667	chr15:96807667:T:A	rs75231634	T	A	T	Sox1_MA0870.1	30	0	-	0	0	.
chr15	97068054	97068055	chr15:97068055:C:T	rs7182371	C	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	97692127	97692128	chr15:97692128:C:T	rs78717104	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr15	97976930	97976931	chr15:97976931:T:C	rs28459484	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr15	97979792	97979793	chr15:97979793:G:A	rs28562489	G	A	G	Sox1_MA0870.1	12	1	+	3.9130295106104835	-2.9957252687047364	AACAAGGACATTGGG
chr15	98155622	98155623	chr15:98155623:C:T	rs55869720	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr15	98323421	98323422	chr15:98323422:C:A	rs2120027	C	A	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr15	98591194	98591195	chr15:98591195:T:C	rs80280442	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr15	98666015	98666016	chr15:98666016:A:T	rs117035556	A	T	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr15	98750057	98750058	chr15:98750058:A:G	rs62024536	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr15	98767861	98767862	chr15:98767862:A:G	rs72769824	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr15	98767897	98767898	chr15:98767898:A:C	rs12905037	A	C	A	Sox1_MA0870.1	17	0	+	0	0	.
chr15	98932296	98932297	chr15:98932297:G:A	rs7162336	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr15	99107273	99107274	chr15:99107274:G:T	rs73476344	G	T	G	Sox1_MA0870.1	29	0	-	0	0	.
chr15	99143359	99143360	chr15:99143360:C:G	rs55752512	C	G	C	Sox1_MA0870.1	4	1	+	3.954967376810598	-0.865797942734374	AACACAGGCATTGAC
chr15	99149845	99149846	chr15:99149846:T:C	rs1703762	T	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr15	99149856	99149857	chr15:99149857:A:G	rs1670213	A	G	G	Sox1_MA0870.1	11	1	-	3.5633715387614813	-1.3920234470488526	CACACTGTCACTGCT
chr15	99251838	99251839	chr15:99251839:G:C	rs28433855	G	C	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr15	99251843	99251844	chr15:99251844:T:A	rs60424090	T	A	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	99341249	99341250	chr15:99341250:A:C	rs3851679	A	C	C	Sox1_MA0870.1	1	1	-	3.4575895673359325	2.6365831591039317	ATCCATGGCAGTGTG
chr15	99513424	99513425	chr15:99513425:A:G	rs115478130	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr15	99564353	99564354	chr15:99564354:C:G	rs144561598	C	G	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr15	99567077	99567078	chr15:99567078:A:G	rs911706969	A	G	a	Sox1_MA0870.1	4	1	+	5.91858748856208	-0.8589907656081076	AACTATAGAATTGTT
chr15	99712102	99712103	chr15:99712103:T:G	rs60066240	T	G	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr15	99967041	99967042	chr15:99967042:T:C	rs2727172	T	C	T	Sox1_MA0870.1	14	1	+	7.240071117660156	5.729061713178751	ATCAATAGCAATGTT
chr15	99976762	99976763	chr15:99976763:C:T	rs12441080	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr15	100134071	100134072	chr15:100134072:A:G	rs728879	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr15	100254268	100254269	chr15:100254269:C:T	rs80342915	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr15	100517928	100517929	chr15:100517929:C:G	rs11247215	C	G	C	Sox1_MA0870.1	24	0	-	0	0	.
chr15	100524321	100524322	chr15:100524322:C:T	rs956212	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr15	100572799	100572800	chr15:100572800:T:C	rs4965317	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr15	100725095	100725096	chr15:100725096:T:C	rs778939897	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr15	100786316	100786317	chr15:100786317:G:A	rs28653206	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr15	100795273	100795274	chr15:100795274:C:T	rs8036060	C	T	T	Sox1_MA0870.1	4	1	+	5.6789807575624	0.8582154380174275	CACACTGACAGTGAG
chr15	100850080	100850081	chr15:100850081:A:G	rs28621749	A	G	a	Sox1_MA0870.1	4	1	+	5.82662120458786	-0.950957049582327	GCCAATGACATTGAA
chr15	100850100	100850101	chr15:100850101:A:G	rs115302369	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr15	100959030	100959031	chr15:100959031:G:A	rs11854204	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr15	101005428	101005429	chr15:101005429:G:A	rs77497708	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr15	101192277	101192278	chr15:101192278:T:G	rs908527707	T	G	T	Sox1_MA0870.1	25	0	-	0	0	.
chr15	101194454	101194455	chr15:101194455:T:C	rs140752541	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr15	101203464	101203465	chr15:101203465:C:A	rs11247276	C	A	C	Sox1_MA0870.1	8	1	+	5.41729113154417	-0.47587852277404397	AACAATATCATCATT
chr15	101203482	101203483	chr15:101203483:A:G	rs34969439	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr15	101296066	101296067	chr15:101296067:T:C	rs8035837	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr15	101347346	101347347	chr15:101347347:C:G	rs60289824	C	G	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr15	101366983	101366984	chr15:101366984:A:G	rs756559	A	G	G	Sox1_MA0870.1	22	0	-	0	0	.
chr15	101387914	101387915	chr15:101387915:C:T	rs3825911	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr15	101411179	101411180	chr15:101411180:C:T	rs880455	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr15	101446600	101446601	chr15:101446601:G:A	rs7402924	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr15	101451741	101451742	chr15:101451742:C:T	rs7173205	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr15	101463796	101463797	chr15:101463797:C:T	rs4965872	C	T	T	Sox1_MA0870.1	2	1	+	6.352827348058284	-0.5559274312569368	GGCAATAACAGTGCC
chr15	101463817	101463818	chr15:101463818:C:T	rs4965873	C	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr15	101466088	101466089	chr15:101466089:C:T	rs12904206	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr15	101500612	101500613	chr15:101500613:A:G	rs2898886	A	G	A	Sox1_MA0870.1	5	1	-	5.093534650175308	-1.8096301084724513	ATCAGTAGCATTGCT
chr15	101552591	101552592	chr15:101552592:C:G	rs11638504	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr15	101564522	101564523	chr15:101564523:A:G	rs11633132	A	G	G	Sox1_MA0870.1	0	1	+	3.843484299517701	2.5013611567109475	AGCACTACCAGTGGC
chr16	346263	346264	chr16:346264:A:G	rs1805105	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr16	384270	384271	chr16:384271:G:A	rs75174257	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr16	427618	427619	chr16:427619:C:G	rs1204510	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr16	455604	455605	chr16:455605:T:C	rs80324424	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr16	457289	457290	chr16:457290:T:C	rs79919699	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr16	528509	528510	chr16:528510:C:A	rs564849507	C	A	C	Sox1_MA0870.1	24	0	-	0	0	.
chr16	557615	557616	chr16:557616:T:C	rs763159	T	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr16	597005	597006	chr16:597006:G:A	rs4984900	G	A	G	Sox1_MA0870.1	6	1	+	2.388600723243922	3.927207416384641	GACAAGGGCATTGGC
chr16	601516	601517	chr16:601517:C:T	rs7191584	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr16	601537	601538	chr16:601538:G:A	rs11642273	G	A	A	Sox1_MA0870.1	2	1	-	3.255586809272716	-3.6531679700425057	AACGATCACATTGCT
chr16	646169	646170	chr16:646170:G:A	rs145347721	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr16	646197	646198	chr16:646198:C:A	rs73487407	C	A	C	Sox1_MA0870.1	0	1	-	5.789078173367226	5.192527210471519	GACAAGAACATTGCC
chr16	948244	948245	chr16:948245:A:C	rs66532042	A	C	-	Sox1_MA0870.1	-6	0	-	0	0	.
chr16	1064257	1064258	chr16:1064258:A:G	rs213658	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	1137732	1137733	chr16:1137733:G:A	rs117540024	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr16	1140654	1140655	chr16:1140655:T:C	rs8044890	T	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr16	1782654	1782655	chr16:1782655:C:A	rs111701870	C	A	C	Sox1_MA0870.1	19	0	-	0	0	.
chr16	1823918	1823919	chr16:1823919:G:A	rs145697684	G	A	g	Sox1_MA0870.1	-2	0	+	0	0	.
chr16	1823947	1823948	chr16:1823948:C:A	rs58222621	C	A	C	Sox1_MA0870.1	27	0	+	0	0	.
chr16	1916187	1916188	chr16:1916188:T:C	rs8043690	T	C	C	Sox1_MA0870.1	6	1	+	2.3420331865059283	-2.0741171006129733	GACACTTGCAATGCG
chr16	2503352	2503353	chr16:2503353:A:G	rs11543247	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr16	2668215	2668216	chr16:2668216:T:C	rs11643554	T	C	t	Sox1_MA0870.1	19	0	-	0	0	.
chr16	2679932	2679933	chr16:2679933:G:C	rs112436312	G	C	N	Sox1_MA0870.1	-12	0	-	0	0	.
chr16	2775274	2775275	chr16:2775275:T:A	rs3094776	T	A	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	2776345	2776346	chr16:2776346:G:A	rs111838652	G	A	G	Sox1_MA0870.1	0	1	-	4.444401241196091	3.74202448404861	CCCAAGTGCATTGTT
chr16	2835677	2835678	chr16:2835678:A:G	rs75106776	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr16	2835692	2835693	chr16:2835693:A:G	rs76693058	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr16	2845347	2845348	chr16:2845348:A:G	rs10744990	A	G	a	Sox1_MA0870.1	4	1	+	3.1810750588112	-3.5965031953589883	GCCCATATCATTGCG
chr16	3135735	3135736	chr16:3135736:T:C	rs560947	T	C	C	Sox1_MA0870.1	6	1	-	10.878675028716827	9.34006833557611	CTCAATACCATTGTA
chr16	3263701	3263702	chr16:3263702:A:C	chr16:3263702:A:C	A	C	A	Sox1_MA0870.1	5	1	-	4.546475723344262	-2.356689035303497	AACAGTGTCAGTGCT
chr16	3263704	3263705	chr16:3263705:G:A	chr16:3263705:G:A	G	A	G	Sox1_MA0870.1	2	1	-	4.546475723344262	-2.362279055970958	AACAGTGTCAGTGCT
chr16	3263725	3263726	chr16:3263726:G:C	rs6501166	G	C	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr16	3473606	3473607	chr16:3473607:T:C	rs166103	T	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr16	3519129	3519130	chr16:3519130:C:T	rs17198722	C	T	C	Sox1_MA0870.1	7	1	+	2.9042086510106344	2.892379598462261	CGCACTACCAGTGAC
chr16	3606623	3606624	chr16:3606624:G:A	rs79842542	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr16	3706330	3706331	chr16:3706331:T:C	rs142406029	T	C	t	Sox1_MA0870.1	22	0	-	0	0	.
chr16	3782469	3782470	chr16:3782470:A:G	rs130021	A	G	A	Sox1_MA0870.1	3	1	+	10.52624546599261	3.625655798795384	AACAAAAACATTGCT
chr16	4007893	4007894	chr16:4007894:T:C	rs11643596	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr16	4103387	4103388	chr16:4103388:C:T	rs449848	C	T	T	Sox1_MA0870.1	4	1	+	5.956407296177236	1.1356419766322636	GACACTTGCAGTGAC
chr16	4299106	4299107	chr16:4299107:C:G	rs74003274	C	G	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr16	4299109	4299110	chr16:4299110:T:C	rs9921192	T	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr16	4306689	4306690	chr16:4306690:G:A	rs150252367	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr16	4500451	4500452	chr16:4500452:T:C	rs17884699	T	C	T	Sox1_MA0870.1	10	1	+	4.486591412015844	-2.32210567212049	CACTATTTCATTGAG
chr16	4512744	4512745	chr16:4512745:T:C	rs72768338	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr16	4797315	4797316	chr16:4797316:C:T	rs7546	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr16	4869708	4869709	chr16:4869709:T:C	rs1876354	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr16	4893017	4893018	chr16:4893018:T:G	rs12921187	T	G	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr16	4933792	4933793	chr16:4933793:A:C	rs2451	A	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr16	4947450	4947451	chr16:4947451:T:G	rs72771955	T	G	T	Sox1_MA0870.1	9	1	-	6.648116998544419	-0.26063778077080235	CAAACTTACATTGTT
chr16	4947463	4947464	chr16:4947464:T:C	rs2908658	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	5323938	5323939	chr16:5323939:C:T	rs2005316	C	T	C	Sox1_MA0870.1	12	1	-	4.347871607147178	-2.560883172168042	AAAAATAACATCGTC
chr16	5480615	5480616	chr16:5480616:A:G	rs8054024	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr16	5521795	5521796	chr16:5521796:T:C	rs1386057	T	C	C	Sox1_MA0870.1	3	1	-	6.3386290474062665	-0.5619606197909578	AAGAATAGCATTGCA
chr16	5557916	5557917	chr16:5557917:A:G	rs55646071	A	G	G	Sox1_MA0870.1	4	1	+	8.399738103627637	1.6221598494574496	AACAATGACAGTGGA
chr16	5590263	5590264	chr16:5590264:C:T	rs8053659	C	T	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr16	5590274	5590275	chr16:5590275:G:T	rs8052571	G	T	G	Sox1_MA0870.1	7	1	+	6.537083176312834	6.492471624024926	CTCACTTGCATTGAT
chr16	5624588	5624589	chr16:5624589:C:G	rs762380853	C	G	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	6096021	6096022	chr16:6096022:T:G	rs9302816	T	G	T	Sox1_MA0870.1	29	0	-	0	0	.
chr16	6250449	6250450	chr16:6250450:G:T	rs62015142	G	T	G	Sox1_MA0870.1	15	0	-	0	0	.
chr16	6298239	6298240	chr16:6298240:G:A	rs34406606	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr16	6362801	6362802	chr16:6362802:C:T	rs2534752	C	T	T	Sox1_MA0870.1	4	1	+	6.274541921837011	1.4537766022920402	CACACTGGCAGTGCA
chr16	6364013	6364014	chr16:6364014:C:T	rs75110114	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr16	6420747	6420748	chr16:6420748:G:C	rs809692	G	C	C	Sox1_MA0870.1	10	1	+	7.192506961025521	2.624934805452749	ACCAATATCAGTGCA
chr16	6420765	6420766	chr16:6420766:C:T	rs802317	C	T	T	Sox1_MA0870.1	28	0	+	0	0	.
chr16	6466590	6466591	chr16:6466591:C:G	rs117703326	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr16	6489014	6489015	chr16:6489015:C:T	rs62016826	C	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr16	6489045	6489046	chr16:6489046:C:T	rs78322108	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr16	6728688	6728689	chr16:6728689:T:C	rs12921288	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	6760810	6760811	chr16:6760811:A:G	rs1978290	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr16	6760823	6760824	chr16:6760824:C:G	rs7195924	C	G	C	Sox1_MA0870.1	4	1	+	4.896246067199497	0.0754807476545255	AACACCAACAGTGTG
chr16	6803249	6803250	chr16:6803250:T:C	rs12445508	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr16	6803251	6803252	chr16:6803252:C:T	rs117092937	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr16	6803282	6803283	chr16:6803283:G:A	rs12447496	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr16	6837902	6837903	chr16:6837903:C:G	rs59758460	C	G	C	Sox1_MA0870.1	8	1	+	5.1335310509494905	1.3630280580491543	AACAATGACAGTTTA
chr16	6853734	6853735	chr16:6853735:G:C	rs57976251	G	C	G	Sox1_MA0870.1	1	1	-	5.817384636040051	5.48823436549141	CCCAATCACATTGTC
chr16	6958515	6958516	chr16:6958516:C:A	chr16:6958516:C:A	C	A	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr16	7314499	7314500	chr16:7314500:G:C	rs566040023	G	C	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr16	7398208	7398209	chr16:7398209:A:G	rs74012549	A	G	A	Sox1_MA0870.1	0	1	+	3.5379136934059967	2.195790550599243	ATCAGTATCATTGCC
chr16	7696794	7696795	chr16:7696795:C:T	rs78465671	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr16	7851644	7851645	chr16:7851645:T:A	rs12709207	T	A	T	Sox1_MA0870.1	9	1	-	5.236599176086044	-1.672155603229176	GACACTTCCAGTGGA
chr16	7887224	7887225	chr16:7887225:C:T	rs9929225	C	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr16	8120457	8120458	chr16:8120458:C:T	rs72767200	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	8374203	8374204	chr16:8374204:G:A	rs55982205	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr16	8391559	8391560	chr16:8391560:C:T	rs114352031	C	T	C	Sox1_MA0870.1	8	1	+	4.072208191956413	-0.10940135468086976	GTTAATAGCATTGTG
chr16	8552739	8552740	chr16:8552740:G:C	rs9928649	G	C	G	Sox1_MA0870.1	19	0	+	0	0	.
chr16	8678711	8678712	chr16:8678712:T:C	rs60472652	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr16	8816051	8816052	chr16:8816052:G:C	rs115737334	G	C	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	8862845	8862846	chr16:8862846:G:A	rs254945	G	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr16	8867005	8867006	chr16:8867006:A:G	rs12446587	A	G	G	Sox1_MA0870.1	9	1	+	5.288420299974792	-1.6203344793404297	AACATTGCCATTGCC
chr16	8867006	8867007	chr16:8867007:T:C	rs12447292	T	C	C	Sox1_MA0870.1	10	1	+	5.288420299974792	-1.5202767841615423	AACATTGCCATTGCC
chr16	8949357	8949358	chr16:8949358:T:C	rs7192015	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr16	9007728	9007729	chr16:9007729:C:G	rs8059363	C	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr16	9085247	9085248	chr16:9085248:G:A	rs75564839	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	9123056	9123057	chr16:9123057:C:T	rs12925781	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr16	9216023	9216024	chr16:9216024:C:T	rs2965869	C	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr16	9251092	9251093	chr16:9251093:G:C	rs2965918	G	C	G	Sox1_MA0870.1	12	1	+	3.3620609313294807	-3.5466938479857397	ACCAACAACATTGCC
chr16	9402437	9402438	chr16:9402438:G:A	rs1992074	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	9670227	9670228	chr16:9670228:T:C	rs62031842	T	C	T	Sox1_MA0870.1	9	1	-	5.37885801446321	-1.52989676485201	AACACAAACATTGGG
chr16	9677417	9677418	chr16:9677418:A:T	rs60158444	A	T	A	Sox1_MA0870.1	24	0	-	0	0	.
chr16	9813802	9813803	chr16:9813803:G:T	rs10468229	G	T	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr16	9827644	9827645	chr16:9827645:T:C	rs2284239	T	C	T	Sox1_MA0870.1	11	1	+	3.3659925722672	-1.5894024135431333	TACCATTCCAGTGCC
chr16	9854776	9854777	chr16:9854777:G:A	rs9933832	G	A	A	Sox1_MA0870.1	20	0	+	0	0	.
chr16	10022841	10022842	chr16:10022842:C:A	rs9921906	C	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr16	10114248	10114249	chr16:10114249:G:A	rs72776014	G	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr16	10121213	10121214	chr16:10121214:T:C	rs1078695	T	C	T	Sox1_MA0870.1	5	1	+	3.5590725497556317	-3.3440922088921265	GACAGTTACATTGAG
chr16	10123048	10123049	chr16:10123049:C:T	rs7204513	C	T	t	Sox1_MA0870.1	19	0	-	0	0	.
chr16	10328463	10328464	chr16:10328464:T:C	rs76227559	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr16	10386530	10386531	chr16:10386531:C:T	rs78684162	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr16	10468515	10468516	chr16:10468516:G:T	rs117559300	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr16	10686785	10686786	chr16:10686786:A:G	rs188256163	A	G	A	Sox1_MA0870.1	11	1	-	3.9686785890093907	-0.9867163968009429	CGCAATAACTTTGTC
chr16	11007674	11007675	chr16:11007675:G:C	rs1174721707	G	C	G	Sox1_MA0870.1	8	1	+	4.47279151638028	8.243294509280616	AGCAATTTGAGTGTG
chr16	11038006	11038007	chr16:11038007:G:C	rs9923455	G	C	C	Sox1_MA0870.1	8	1	-	5.32096877940406	1.5504657865037221	AAAAATTTCATTGCA
chr16	11129325	11129326	chr16:11129326:G:A	rs116550300	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	11133519	11133520	chr16:11133520:A:G	chr16:11133520:A:G	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr16	11133558	11133559	chr16:11133559:A:T	rs115234594	A	T	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr16	11274378	11274379	chr16:11274379:G:A	rs16958199	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr16	11314188	11314189	chr16:11314189:C:A	rs11640800	C	A	C	Sox1_MA0870.1	13	1	+	3.438381811588791	2.2705110824506263	TACACTTCCACTGCT
chr16	11367923	11367924	chr16:11367924:G:C	rs78544881	G	C	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	11439380	11439381	chr16:11439381:C:T	rs61194344	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr16	11475597	11475598	chr16:11475598:A:G	rs9936203	A	G	G	Sox1_MA0870.1	11	1	-	4.684064238073977	-0.2713307477363567	CTCCATGACATTGTA
chr16	11585092	11585093	chr16:11585093:C:A	rs55947021	C	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	11613311	11613312	chr16:11613312:A:G	rs9922730	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr16	11636603	11636604	chr16:11636604:C:T	rs137899528	C	T	c	Sox1_MA0870.1	-3	0	-	0	0	.
chr16	11687504	11687505	chr16:11687505:C:G	rs77314133	C	G	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	11728142	11728143	chr16:11728143:A:T	rs78083064	A	T	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr16	11802245	11802246	chr16:11802246:T:G	rs12386001	T	G	T	Sox1_MA0870.1	4	1	-	4.737727010386283	2.780914075761066	ATCTATATCAGTGTC
chr16	11828781	11828782	chr16:11828782:G:C	rs139891151	G	C	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr16	11964356	11964357	chr16:11964357:T:C	rs10451085	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr16	11964378	11964379	chr16:11964379:C:A	rs10451099	C	A	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	12076904	12076905	chr16:12076905:G:C	rs350244	G	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr16	12154999	12155000	chr16:12155000:C:T	rs7501241	C	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr16	12289967	12289968	chr16:12289968:C:T	chr16:12289968:C:T	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr16	12289978	12289979	chr16:12289979:C:T	rs137964461	C	T	C	Sox1_MA0870.1	6	1	-	5.463892613263058	7.0024993064037755	CACACTGCCAGTGAC
chr16	12386573	12386574	chr16:12386574:G:C	rs74011704	G	C	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr16	12420825	12420826	chr16:12420826:C:T	rs112840962	C	T	C	Sox1_MA0870.1	0	1	-	4.832625111358971	6.174748254165726	GAGACTATCAGTGTT
chr16	12489499	12489500	chr16:12489500:G:A	rs79499397	G	A	G	Sox1_MA0870.1	4	1	-	3.5756159433049834	-1.245149376239989	CACACAGCCAGTGTG
chr16	12573631	12573632	chr16:12573632:G:T	rs28622434	G	T	G	Sox1_MA0870.1	34	0	-	0	0	.
chr16	12716850	12716851	chr16:12716851:C:T	rs76835380	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr16	12759331	12759332	chr16:12759332:C:T	rs3859029	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr16	12773852	12773853	chr16:12773853:A:G	rs12920195	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr16	12777781	12777782	chr16:12777782:T:C	rs4536458	T	C	C	Sox1_MA0870.1	4	1	-	9.397593604825024	2.6200153506548363	GCCAATTACAGTGTT
chr16	12794098	12794099	chr16:12794099:T:C	rs9302490	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr16	12950547	12950548	chr16:12950548:C:A	rs8049370	C	A	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr16	13000683	13000684	chr16:13000684:C:T	rs34494407	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr16	13045989	13045990	chr16:13045990:T:C	rs9924679	T	C	T	Sox1_MA0870.1	3	1	-	3.272260465933238	-3.6283292012639863	CTCAATTCCACTGTG
chr16	13108970	13108971	chr16:13108971:G:C	rs251921	G	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr16	13216918	13216919	chr16:13216919:C:A	rs56396226	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr16	13628203	13628204	chr16:13628204:G:T	rs74009048	G	T	G	Sox1_MA0870.1	34	0	+	0	0	.
chr16	13759187	13759188	chr16:13759188:T:G	rs7342774	T	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr16	13780596	13780597	chr16:13780597:T:C	rs9302505	T	C	T	Sox1_MA0870.1	1	1	-	6.382541690589679	2.284251035196537	AACTCTGCCATTGTA
chr16	13883408	13883409	chr16:13883409:G:T	rs9923843	G	T	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr16	13884233	13884234	chr16:13884234:T:G	rs8048606	T	G	c	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	13884258	13884259	chr16:13884259:G:A	rs11644833	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr16	13902282	13902283	chr16:13902283:A:G	rs3888364	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr16	14539936	14539937	chr16:14539937:G:A	rs12447623	G	A	G	Sox1_MA0870.1	1	1	+	5.47713482368	9.575425479073141	AGCATTTGCATTGTT
chr16	14549813	14549814	chr16:14549814:C:A	rs79188449	C	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr16	14978575	14978576	chr16:14978576:C:T	rs4985128	C	T	.	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	14979992	14979993	chr16:14979993:A:G	rs6498528	A	G	A	Sox1_MA0870.1	10	1	+	4.40026062171621	8.967832777288983	GCCAATTCCAATGTT
chr16	15029757	15029758	chr16:15029758:G:T	rs56859518	G	T	.	Sox1_MA0870.1	8	1	-	5.565539991820054	-0.3276296624981594	TACAAGTTCATTGTA
chr16	15572656	15572657	chr16:15572657:C:T	rs116889381	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr16	15572700	15572701	chr16:15572701:T:C	rs145007516	T	C	T	Sox1_MA0870.1	3	1	+	5.073201047522459	5.501731428561619	GACTCTGGCATTGTA
chr16	15648082	15648083	chr16:15648083:G:C	rs62036923	G	C	G	Sox1_MA0870.1	17	0	-	0	0	.
chr16	15678093	15678094	chr16:15678094:G:A	rs78975640	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr16	15815462	15815463	chr16:15815463:A:G	rs62030627	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr16	16030150	16030151	chr16:16030151:C:T	rs11642957	C	T	t	Sox1_MA0870.1	20	0	-	0	0	.
chr16	16061635	16061636	chr16:16061636:G:A	rs34360190	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr16	17159782	17159783	chr16:17159783:G:T	rs72775997	G	T	G	Sox1_MA0870.1	12	1	+	7.128810605590563	0.22005582627534315	AGCACTAGCAGTGTA
chr16	17269478	17269479	chr16:17269479:A:G	rs62033193	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	17292977	17292978	chr16:17292978:C:T	rs7206651	C	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr16	17370185	17370186	chr16:17370186:G:A	rs117001239	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr16	17453443	17453444	chr16:17453444:T:G	rs28608850	T	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr16	17577752	17577753	chr16:17577753:C:T	rs28572347	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	17773603	17773604	chr16:17773604:C:T	rs12708832	C	T	C	Sox1_MA0870.1	2	1	+	3.9867830997396427	-2.921971679575579	CACGCTAACATTGGT
chr16	18018464	18018465	chr16:18018465:A:G	rs4780664	A	G	G	Sox1_MA0870.1	6	1	+	5.763683240032709	4.225076546891991	CACAATAGTAGTGCG
chr16	18354986	18354987	chr16:18354987:T:C	rs879667628	T	C	t	Sox1_MA0870.1	16	0	-	0	0	.
chr16	18743871	18743872	chr16:18743872:C:A	rs7206538	C	A	C	Sox1_MA0870.1	27	0	+	0	0	.
chr16	18771851	18771852	chr16:18771852:T:C	rs7194624	T	C	-	Sox1_MA0870.1	4	1	-	5.7182599414660364	-1.059318312704152	GACAAAAGCATTGAA
chr16	19071501	19071502	chr16:19071502:A:G	rs117361580	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr16	19154086	19154087	chr16:19154087:C:T	chr16:19154087:C:T	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr16	19588736	19588737	chr16:19588737:A:G	rs226870	A	G	G	Sox1_MA0870.1	5	1	-	6.659539076406846	-0.24362568224091263	CACAGTGACATTGTC
chr16	19698691	19698692	chr16:19698692:T:C	rs11859776	T	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr16	19698735	19698736	chr16:19698736:C:T	rs114703615	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr16	19804760	19804761	chr16:19804761:G:A	rs148818991	G	A	G	Sox1_MA0870.1	10	1	+	12.09016558438145	7.522593428808678	CACAATACCAGTGTG
chr16	19822761	19822762	chr16:19822762:G:T	rs77147023	G	T	G	Sox1_MA0870.1	32	0	-	0	0	.
chr16	20711313	20711314	chr16:20711314:A:G	rs56139896	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr16	20763980	20763981	chr16:20763981:T:C	rs5710	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr16	21038065	21038066	chr16:21038066:C:T	rs80246148	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr16	21527028	21527029	chr16:21527029:G:A	rs545205	G	A	.	Sox1_MA0870.1	32	0	-	0	0	.
chr16	21527065	21527066	chr16:21527066:G:A	chr16:21527066:G:A	G	A	.	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	21527065	21527066	chr16:21527066:G:C	rs740592	G	C	.	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	21727665	21727666	chr16:21727666:G:C	rs7184989	G	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr16	21727670	21727671	chr16:21727671:G:A	rs12934324	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr16	21958972	21958973	chr16:21958973:G:A	rs149885430	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr16	22210164	22210165	chr16:22210165:T:C	rs929849	T	C	C	Sox1_MA0870.1	14	1	+	5.053372628617609	3.542363224136204	GAAAATAACAGTGCT
chr16	23013545	23013546	chr16:23013546:G:A	rs4783502	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr16	23036069	23036070	chr16:23036070:A:C	rs11074538	A	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr16	23132239	23132240	chr16:23132240:A:C	rs573017561	A	C	A	Sox1_MA0870.1	1	1	+	6.632666450801635	2.8635260659571364	AACAATAATATTTTT
chr16	23147129	23147130	chr16:23147130:C:G	rs71378502	C	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr16	23705445	23705446	chr16:23705446:T:C	rs7199034	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr16	23840743	23840744	chr16:23840744:A:G	rs7404078	A	G	A	Sox1_MA0870.1	5	1	-	4.7190128060299905	-2.1841519526177695	ACCCATAGCAGTGTC
chr16	23857963	23857964	chr16:23857964:G:A	rs59790099	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	23876861	23876862	chr16:23876862:G:T	rs9940072	G	T	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr16	23905272	23905273	chr16:23905273:C:T	rs146054397	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	23905303	23905304	chr16:23905304:T:A	rs17753694	T	A	T	Sox1_MA0870.1	11	1	+	4.030315950222177	-2.8724167366346554	AACACAAGCAGTGCA
chr16	24357804	24357805	chr16:24357805:T:C	rs75261983	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr16	24512594	24512595	chr16:24512595:T:C	rs9921527	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	24611690	24611691	chr16:24611691:A:T	rs2033218	A	T	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr16	24669117	24669118	chr16:24669118:A:G	rs16973907	A	G	A	Sox1_MA0870.1	10	1	-	6.607878454451219	-0.20081862968511344	ACCACTCACATTGTT
chr16	24684018	24684019	chr16:24684019:A:G	rs7198632	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr16	24686738	24686739	chr16:24686739:C:T	rs1004751403	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr16	24782419	24782420	chr16:24782420:C:T	rs2343606	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr16	25033999	25034000	chr16:25034000:T:G	rs28420227	T	G	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr16	25140510	25140511	chr16:25140511:G:C	rs147636258	G	C	G	Sox1_MA0870.1	14	1	-	4.2841365796469795	4.06946389641028	AACAAAAACCTTGTC
chr16	25466392	25466393	chr16:25466393:T:C	rs9935555	T	C	t	Sox1_MA0870.1	14	1	+	6.229038955577469	4.718029551096064	TCCAATCGCATTGTT
chr16	25948836	25948837	chr16:25948837:A:G	rs4075109	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr16	25948850	25948851	chr16:25948851:C:T	rs34709550	C	T	C	Sox1_MA0870.1	7	1	-	6.706625699718159	7.103604027514667	AACAACGGCATTGCT
chr16	25989024	25989025	chr16:25989025:G:C	rs7190163	G	C	C	Sox1_MA0870.1	7	1	-	3.1865216956391604	3.219304195378693	CACCATACCAGTGGA
chr16	26505611	26505612	chr16:26505612:T:C	rs184771573	T	C	T	Sox1_MA0870.1	14	1	+	2.733945895197274	1.222936490715869	AACATTTCCAATGTT
chr16	26505811	26505812	chr16:26505812:A:G	rs79090407	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr16	26505819	26505820	chr16:26505820:G:A	rs35991710	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr16	26646575	26646576	chr16:26646576:C:T	rs17200345	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr16	26883599	26883600	chr16:26883600:A:G	rs56336353	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr16	26987537	26987538	chr16:26987538:T:G	rs62029850	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	27254440	27254441	chr16:27254441:C:G	rs111576311	C	G	C	Sox1_MA0870.1	12	1	+	5.201699538451425	12.110454317766646	AACACTTTCAGTCTT
chr16	27259750	27259751	chr16:27259751:A:G	rs4787418	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr16	27267305	27267306	chr16:27267306:G:A	rs72782383	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr16	27267314	27267315	chr16:27267315:C:T	rs116942558	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr16	27283926	27283927	chr16:27283927:G:C	rs572601731	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr16	27324537	27324538	chr16:27324538:A:C	rs561224871	A	C	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr16	27816059	27816060	chr16:27816060:G:A	rs1363749	G	A	A	Sox1_MA0870.1	12	1	+	6.777769076439286	-0.13098570287593436	CACCATATTATTGTT
chr16	28054072	28054073	chr16:28054073:T:C	rs9923468	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr16	28107034	28107035	chr16:28107035:T:A	rs72789638	T	A	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	28125266	28125267	chr16:28125267:C:A	rs33045	C	A	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr16	28133826	28133827	chr16:28133827:G:A	rs184989	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr16	28133843	28133844	chr16:28133844:T:A	rs181760	T	A	T	Sox1_MA0870.1	11	1	+	5.312587330211263	-1.5901453566455683	CACATTACCAGTGTG
chr16	28241999	28242000	chr16:28242000:G:C	rs9932218	G	C	G	Sox1_MA0870.1	22	0	+	0	0	.
chr16	28554836	28554837	chr16:28554837:G:T	rs3859172	G	T	T	Sox1_MA0870.1	7	1	+	6.222610192281543	6.177998639993637	GCCAAATGCATTGTT
chr16	28636384	28636385	chr16:28636385:C:T	rs137991131	C	T	.	Sox1_MA0870.1	-15	0	+	0	0	.
chr16	29196617	29196618	chr16:29196618:G:T	rs55710189	G	T	.	Sox1_MA0870.1	14	1	+	3.5417635313168754	5.267445619034979	CACCCTGGCAGTGTG
chr16	29294718	29294719	chr16:29294719:A:T	rs112358628	A	T	.	Sox1_MA0870.1	15	0	+	0	0	.
chr16	29663792	29663793	chr16:29663793:C:T	rs2229653	C	T	.	Sox1_MA0870.1	5	1	+	2.866796790955187	9.769961549602947	CACAACAGCAGTGCA
chr16	30923102	30923103	chr16:30923103:G:A	rs781444708	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr16	31336028	31336029	chr16:31336029:T:G	rs4506917	T	G	t	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	34096286	34096287	chr16:34096287:T:A	rs1292634909	T	A	.	Sox1_MA0870.1	-16	0	+	0	0	.
chr16	36018870	36018871	chr16:36018871:G:T	rs57199504	G	T	.	Sox1_MA0870.1	10	1	+	3.2489641328254155	5.490089061388977	GACATTGGCAGTGCT
chr16	36335958	36335959	chr16:36335959:T:A	rs1216695590	T	A	.	Sox1_MA0870.1	11	1	+	6.692272841979706	-0.21045984487712632	AACAAAAAGAGTGTT
chr16	36335975	36335976	chr16:36335976:A:G	rs1317167639	A	G	.	Sox1_MA0870.1	28	0	+	0	0	.
chr16	36336627	36336628	chr16:36336628:A:G	rs1313524845	A	G	.	Sox1_MA0870.1	1	1	+	4.753598736277245	0.6553080808841046	TACAAAAAGAGTGTT
chr16	37073790	37073791	chr16:37073791:A:G	rs1318872984	A	G	.	Sox1_MA0870.1	17	0	-	0	0	.
chr16	38254729	38254730	chr16:38254730:G:T	rs1157321537	G	T	.	Sox1_MA0870.1	-13	0	-	0	0	.
chr16	38254736	38254737	chr16:38254737:G:C	rs1248023620	G	C	.	Sox1_MA0870.1	-20	0	-	0	0	.
chr16	46393577	46393578	chr16:46393578:T:C	rs1825764	T	C	.	Sox1_MA0870.1	3	1	-	5.068845691534615	-1.8317439756626095	TCCAATTCCATTGGA
chr16	46849100	46849101	chr16:46849101:C:A	rs188403086	C	A	C	Sox1_MA0870.1	2	1	+	3.8920354348197774	-3.0167193444954443	GGCACATTCATTGTT
chr16	47980534	47980535	chr16:47980535:C:T	rs62057537	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr16	48383077	48383078	chr16:48383078:T:G	rs114376466	T	G	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr16	48612940	48612941	chr16:48612941:A:T	rs2129243	A	T	T	Sox1_MA0870.1	22	0	-	0	0	.
chr16	48972546	48972547	chr16:48972547:T:A	rs10852587	T	A	A	Sox1_MA0870.1	1	1	-	2.76079560815975	-0.5164886390013895	CACACTATCTGTGCT
chr16	49061651	49061652	chr16:49061652:C:T	rs116887142	C	T	C	Sox1_MA0870.1	13	1	+	3.457545744509708	5.635201041960702	GACACTGTCACTGCT
chr16	49334276	49334277	chr16:49334277:A:G	rs36507	A	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr16	49407059	49407060	chr16:49407060:A:G	rs117685595	A	G	-	Sox1_MA0870.1	-8	0	-	0	0	.
chr16	49407062	49407063	chr16:49407063:C:T	rs117958806	C	T	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr16	49412045	49412046	chr16:49412046:C:T	rs747762	C	T	T	Sox1_MA0870.1	25	0	+	0	0	.
chr16	49426292	49426293	chr16:49426293:A:G	rs80270640	A	G	A	Sox1_MA0870.1	1	1	-	3.9502878776955286	3.4584317400121702	ATCAACTTCATTGCT
chr16	49670886	49670887	chr16:49670887:C:G	rs28409311	C	G	C	Sox1_MA0870.1	24	0	-	0	0	.
chr16	49670926	49670927	chr16:49670927:G:A	rs954007387	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr16	50127385	50127386	chr16:50127386:G:A	rs77791228	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr16	50382611	50382612	chr16:50382612:C:T	rs10775344	C	T	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr16	50438139	50438140	chr16:50438140:C:T	rs140791929	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr16	50653094	50653095	chr16:50653095:C:T	rs75663451	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr16	50653103	50653104	chr16:50653104:C:T	rs2066849	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr16	50699462	50699463	chr16:50699463:G:T	rs2076753	G	T	G	Sox1_MA0870.1	13	1	-	2.6952071311485875	1.5273364020104228	AACAAGGTCAGTGCG
chr16	50730924	50730925	chr16:50730925:G:A	rs2357791	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr16	50889460	50889461	chr16:50889461:G:A	rs16949042	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr16	51138611	51138612	chr16:51138612:G:A	rs77466256	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr16	51186002	51186003	chr16:51186003:G:A	rs1548924	G	A	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr16	51245144	51245145	chr16:51245145:C:T	rs7500652	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr16	51245641	51245642	chr16:51245642:C:G	rs7498154	C	G	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr16	51407039	51407040	chr16:51407040:T:C	rs4784260	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr16	51432228	51432229	chr16:51432229:T:A	rs8055396	T	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr16	51764111	51764112	chr16:51764112:C:T	rs4784662	C	T	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	51891790	51891791	chr16:51891791:T:C	rs13335019	T	C	T	Sox1_MA0870.1	10	1	+	6.195449923977012	-0.6132471601593209	CTCACTTTCATTGGT
chr16	52727134	52727135	chr16:52727135:A:G	rs1946142	A	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	53147718	53147719	chr16:53147719:A:G	rs79243132	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	53455277	53455278	chr16:53455278:A:T	rs7194730	A	T	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr16	53761723	53761724	chr16:53761724:A:G	rs13334933	A	G	C	Sox1_MA0870.1	19	0	-	0	0	.
chr16	53816990	53816991	chr16:53816991:C:T	rs56057753	C	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr16	53874744	53874745	chr16:53874745:T:C	rs10521304	T	C	T	Sox1_MA0870.1	4	1	-	4.457252262565911	-2.320325991604277	AGCAATATGATCGTT
chr16	53923087	53923088	chr16:53923088:G:A	rs570366223	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr16	53946888	53946889	chr16:53946889:T:A	rs113964298	T	A	T	Sox1_MA0870.1	0	1	-	8.195030819903508	6.256356714201048	AACAATATCATTACT
chr16	54096257	54096258	chr16:54096258:G:T	rs16953047	G	T	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr16	54161315	54161316	chr16:54161316:C:T	rs12448173	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr16	54161360	54161361	chr16:54161361:A:G	rs76289419	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr16	54214308	54214309	chr16:54214309:T:A	rs55760183	T	A	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr16	54353171	54353172	chr16:54353172:G:A	rs2216063	G	A	G	Sox1_MA0870.1	1	1	-	8.404783564034712	8.89663970171807	ACCACTTTCATTGCT
chr16	54417834	54417835	chr16:54417835:C:T	rs12922549	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr16	54417967	54417968	chr16:54417968:G:A	rs7186341	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr16	54419133	54419134	chr16:54419134:T:C	rs12932446	T	C	T	Sox1_MA0870.1	0	1	+	4.576185752241677	5.278562509389157	TACACTATCATTATA
chr16	54430305	54430306	chr16:54430306:G:T	rs7189231	G	T	T	Sox1_MA0870.1	1	1	-	6.929911720613516	10.699052105458014	TCCACTTCCATTGTG
chr16	54536717	54536718	chr16:54536718:T:A	rs145659121	T	A	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	54927070	54927071	chr16:54927071:G:C	rs12932618	G	C	G	Sox1_MA0870.1	30	0	+	0	0	.
chr16	54927597	54927598	chr16:54927598:G:T	rs146956739	G	T	G	Sox1_MA0870.1	12	1	+	6.154639766924032	-0.7541150123911886	GACAATACAATTGCG
chr16	55044537	55044538	chr16:55044538:G:A	rs936879	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr16	55076029	55076030	chr16:55076030:C:A	rs7198804	C	A	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr16	55267974	55267975	chr16:55267975:C:T	rs30978	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr16	55276537	55276538	chr16:55276538:C:T	rs9938848	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr16	55321867	55321868	chr16:55321868:C:T	rs115881607	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr16	55776026	55776027	chr16:55776027:A:G	rs28704848	A	G	-	Sox1_MA0870.1	21	0	+	0	0	.
chr16	55811540	55811541	chr16:55811541:C:T	rs151069757	C	T	c	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	55814383	55814384	chr16:55814384:C:A	rs3893204	C	A	-	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	55965665	55965666	chr16:55965666:A:G	rs11865906	A	G	A	Sox1_MA0870.1	10	1	-	3.433523950484969	-3.375173133651364	AACATTGCCATTGGA
chr16	56022748	56022749	chr16:56022749:A:G	rs140566494	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	56067351	56067352	chr16:56067352:C:T	rs78215046	C	T	C	Sox1_MA0870.1	12	1	-	7.901834489543597	0.9930797102283759	CCCAATAGCAGTGCT
chr16	56116422	56116423	chr16:56116423:A:G	rs75549919	A	G	A	Sox1_MA0870.1	7	1	+	6.899625784635747	6.50264745683924	AACTATGAGATTGTT
chr16	56121805	56121806	chr16:56121806:C:T	rs7202833	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr16	56266746	56266747	chr16:56266747:T:A	rs56256601	T	A	T	Sox1_MA0870.1	19	0	+	0	0	.
chr16	56535015	56535016	chr16:56535016:T:C	rs600390	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr16	56605321	56605322	chr16:56605322:A:G	rs2161737	A	G	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	56863346	56863347	chr16:56863347:C:G	rs8051191	C	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr16	56865093	56865094	chr16:56865094:C:T	rs4784733	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr16	56865094	56865095	chr16:56865095:G:C	rs13306690	G	C	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr16	56894762	56894763	chr16:56894763:C:A	rs2289118	C	A	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	57017458	57017459	chr16:57017459:C:T	rs74023632	C	T	c	Sox1_MA0870.1	4	1	+	6.175689367240479	1.3549240476955084	CACACTATGAGTGTA
chr16	57018071	57018072	chr16:57018072:C:A	rs16965070	C	A	t	Sox1_MA0870.1	-10	0	-	0	0	.
chr16	57047114	57047115	chr16:57047115:G:T	rs289724	G	T	T	Sox1_MA0870.1	12	1	+	4.2837367439554885	-2.6250180353597314	TTCAATTTCACTGTT
chr16	57132065	57132066	chr16:57132066:G:A	rs16966632	G	A	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr16	57151218	57151219	chr16:57151219:A:G	rs75158678	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr16	57302911	57302912	chr16:57302912:T:C	rs113234391	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr16	57507957	57507958	chr16:57507958:G:A	rs766791642	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	57507972	57507973	chr16:57507973:A:G	rs62039369	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr16	57537490	57537491	chr16:57537491:A:G	rs77253565	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr16	57627637	57627638	chr16:57627638:G:A	rs78292420	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr16	57845904	57845905	chr16:57845905:G:A	rs366762	G	A	G	Sox1_MA0870.1	13	1	-	3.892372078019585	6.070027375470579	AACTCTACCAGTGCC
chr16	57977545	57977546	chr16:57977546:C:T	rs4583232	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr16	57994349	57994350	chr16:57994350:T:C	rs4145589	T	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	58338472	58338473	chr16:58338473:C:T	rs72788151	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr16	58904526	58904527	chr16:58904527:C:T	rs74620361	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr16	59570621	59570622	chr16:59570622:T:C	rs13338586	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr16	59878696	59878697	chr16:59878697:T:C	rs77574902	T	C	T	Sox1_MA0870.1	6	1	+	6.03153475871842	1.6153844715995187	AACACATGCATTGAT
chr16	59878720	59878721	chr16:59878721:T:C	rs72787758	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr16	59907595	59907596	chr16:59907596:A:G	rs9938886	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr16	60175248	60175249	chr16:60175249:G:A	rs8064043	G	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr16	60361442	60361443	chr16:60361443:C:T	rs8050990	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr16	60756071	60756072	chr16:60756072:T:A	rs117716474	T	A	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr16	61721637	61721638	chr16:61721638:A:C	rs186136258	A	C	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr16	62154437	62154438	chr16:62154438:A:G	rs11865688	A	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr16	62162718	62162719	chr16:62162719:C:T	rs10852401	C	T	C	Sox1_MA0870.1	2	1	+	6.176871088304052	-0.7318836910111696	TACAATTACATTCTG
chr16	62609479	62609480	chr16:62609480:C:T	rs420394	C	T	A	Sox1_MA0870.1	26	0	-	0	0	.
chr16	62858130	62858131	chr16:62858131:C:A	rs9926558	C	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr16	63063102	63063103	chr16:63063103:G:C	rs7206149	G	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr16	63109129	63109130	chr16:63109130:T:C	rs198001	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr16	64151987	64151988	chr16:64151988:A:G	rs58585317	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr16	64186294	64186295	chr16:64186295:C:T	rs184773717	C	T	C	Sox1_MA0870.1	12	1	-	4.099468293670046	-2.809286485645174	GCCAATTTCAGTGAC
chr16	64253369	64253370	chr16:64253370:T:C	rs1903014	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr16	64363242	64363243	chr16:64363243:A:G	rs146413077	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	64397300	64397301	chr16:64397301:A:T	chr16:64397301:A:T	A	T	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr16	64408372	64408373	chr16:64408373:T:G	rs7205900	T	G	T	Sox1_MA0870.1	23	0	-	0	0	.
chr16	64625847	64625848	chr16:64625848:G:T	rs4448963	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr16	64639049	64639050	chr16:64639050:A:G	rs7205933	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr16	64654207	64654208	chr16:64654208:G:A	rs7191764	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr16	64893605	64893606	chr16:64893606:C:T	rs78043738	C	T	C	Sox1_MA0870.1	8	1	+	6.656424126762791	2.4748145801255075	AACAATGTCATTTCT
chr16	64920448	64920449	chr16:64920449:T:C	rs4967877	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr16	65145586	65145587	chr16:65145587:A:G	rs7189723	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	65225169	65225170	chr16:65225170:T:C	rs9934772	T	C	T	Sox1_MA0870.1	11	1	+	7.145193307773306	2.1897983219629715	ACCAATAACAATGTT
chr16	65229704	65229705	chr16:65229705:A:T	rs9673255	A	T	A	Sox1_MA0870.1	7	1	+	3.991327693731216	3.5497378136468014	CACAATAACAGTAAT
chr16	65350399	65350400	chr16:65350400:G:T	rs73578346	G	T	G	Sox1_MA0870.1	27	0	-	0	0	.
chr16	65404682	65404683	chr16:65404683:G:C	rs138892820	G	C	G	Sox1_MA0870.1	8	1	-	9.076129970060991	5.305626977160653	ATCAATTCCAGTGTG
chr16	65601498	65601499	chr16:65601499:A:G	rs6499011	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr16	65667133	65667134	chr16:65667134:C:A	rs76631459	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr16	65775883	65775884	chr16:65775884:G:A	rs79234865	G	A	G	Sox1_MA0870.1	4	1	-	2.7752663169372274	-2.045499002607743	TACACCAGCAGTGTC
chr16	65938237	65938238	chr16:65938238:C:A	rs1103776	C	A	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr16	65945934	65945935	chr16:65945935:T:C	rs166210	T	C	C	Sox1_MA0870.1	27	0	+	0	0	.
chr16	66023281	66023282	chr16:66023282:T:C	rs12923341	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	66080002	66080003	chr16:66080003:T:C	rs151136299	T	C	T	Sox1_MA0870.1	10	1	+	4.926030386868662	-1.882666697267671	CTCAAAGACATTGTG
chr16	66261790	66261791	chr16:66261791:C:T	rs74501164	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr16	66294067	66294068	chr16:66294068:C:T	rs73587145	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr16	66307520	66307521	chr16:66307521:C:G	rs58771724	C	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr16	66344848	66344849	chr16:66344849:A:G	rs11863931	A	G	A	Sox1_MA0870.1	13	1	-	6.658880789436111	4.481225491985118	AACACTTGGAGTGTG
chr16	66348080	66348081	chr16:66348081:C:A	rs12596005	C	A	C	Sox1_MA0870.1	29	0	+	0	0	.
chr16	66364441	66364442	chr16:66364442:C:A	rs28606042	C	A	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	66407338	66407339	chr16:66407339:T:C	rs193246188	T	C	T	Sox1_MA0870.1	3	1	-	8.630280664062894	1.7296909968656697	GACATTTACATTGTT
chr16	66487971	66487972	chr16:66487972:T:C	rs16956575	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr16	66490670	66490671	chr16:66490671:C:G	rs8049640	C	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr16	66625120	66625121	chr16:66625121:C:T	rs355950	C	T	T	Sox1_MA0870.1	25	0	+	0	0	.
chr16	66625914	66625915	chr16:66625915:A:G	rs165207	A	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr16	67007595	67007596	chr16:67007596:A:G	rs111395994	A	G	A	Sox1_MA0870.1	11	1	-	5.486818777578151	0.5314237917678162	GACACTTTGAGTGTC
chr16	67399389	67399390	chr16:67399390:C:T	rs116843861	C	T	C	Sox1_MA0870.1	4	1	+	3.4012546157662267	-1.4195107037787444	GCCACTTGCAGTGGT
chr16	67806317	67806318	chr16:67806318:G:A	rs145391816	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr16	67806362	67806363	chr16:67806363:G:A	rs139087878	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr16	67806368	67806369	chr16:67806369:G:A	rs140410676	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr16	68328319	68328320	chr16:68328320:C:T	rs147713014	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr16	68646747	68646748	chr16:68646748:C:G	rs2862778	C	G	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr16	68728850	68728851	chr16:68728851:T:G	rs115022667	T	G	T	Sox1_MA0870.1	17	0	-	0	0	.
chr16	68775303	68775304	chr16:68775304:C:T	rs13334326	C	T	C	Sox1_MA0870.1	2	1	+	6.098601723725773	-0.8101530555894483	CACAATGCCATTATC
chr16	68805398	68805399	chr16:68805399:T:C	rs10431924	T	C	T	Sox1_MA0870.1	9	1	-	6.110156309777315	-0.7985984695379056	CACACTAACATTTTC
chr16	69849303	69849304	chr16:69849304:A:C	chr16:69849304:A:C	A	C	A	Sox1_MA0870.1	29	0	+	0	0	.
chr16	70162235	70162236	chr16:70162236:T:C	rs111868278	T	C	T	Sox1_MA0870.1	10	1	+	6.94489515197701	0.13619806784067645	AAAAATGCCATTGTA
chr16	70165236	70165237	chr16:70165237:T:C	rs559105852	T	C	t	Sox1_MA0870.1	4	1	-	4.3534616278146405	-2.4241166263555485	AACAACAACATCGTC
chr16	70731224	70731225	chr16:70731225:G:A	rs60028268	G	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr16	70803715	70803716	chr16:70803716:G:T	rs77069808	G	T	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr16	71356419	71356420	chr16:71356420:A:G	rs1007634	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	71356426	71356427	chr16:71356427:A:G	rs35839403	A	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	71369179	71369180	chr16:71369180:C:T	rs12599948	C	T	c	Sox1_MA0870.1	21	0	+	0	0	.
chr16	71475892	71475893	chr16:71475893:C:G	rs8050871	C	G	C	Sox1_MA0870.1	10	1	-	4.9299328779179135	0.3623607223451407	GACCCTATCAGTGTG
chr16	71484750	71484751	chr16:71484751:T:C	rs13331092	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr16	71657373	71657374	chr16:71657374:G:A	rs999234620	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr16	71760157	71760158	chr16:71760158:C:T	rs7197104	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr16	71783266	71783267	chr16:71783267:A:C	rs11866795	A	C	A	Sox1_MA0870.1	24	0	-	0	0	.
chr16	71845258	71845259	chr16:71845259:C:T	rs35209006	C	T	.	Sox1_MA0870.1	28	0	+	0	0	.
chr16	71900565	71900566	chr16:71900566:G:C	rs75233370	G	C	G	Sox1_MA0870.1	18	0	-	0	0	.
chr16	72000964	72000965	chr16:72000965:T:C	rs7185215	T	C	T	Sox1_MA0870.1	7	1	-	6.232452622294778	5.835474294498271	CACAATAACATTTAT
chr16	72194739	72194740	chr16:72194740:C:T	rs80239990	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr16	72195914	72195915	chr16:72195915:T:C	rs75969080	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr16	72612133	72612134	chr16:72612134:C:T	rs1366847	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr16	72925067	72925068	chr16:72925068:C:T	rs12922127	C	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr16	72925085	72925086	chr16:72925086:A:G	rs11864105	A	G	G	Sox1_MA0870.1	5	1	-	5.399791442912077	-1.5033733157356821	ATCACTGGCATTGGC
chr16	73010875	73010876	chr16:73010876:T:A	rs4302070	T	A	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	73106853	73106854	chr16:73106854:A:G	rs8045933	A	G	A	Sox1_MA0870.1	10	1	-	5.680698589751071	-1.127998494385262	ACCAAGTGCATTGTT
chr16	73163670	73163671	chr16:73163671:C:T	rs59029059	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr16	73485188	73485189	chr16:73485189:T:C	rs8044612	T	C	t	Sox1_MA0870.1	-6	0	+	0	0	.
chr16	73568675	73568676	chr16:73568676:C:T	rs137871707	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr16	74394736	74394737	chr16:74394737:T:C	rs542293835	T	C	.	Sox1_MA0870.1	31	0	+	0	0	.
chr16	74466989	74466990	chr16:74466990:C:G	rs12325017	C	G	G	Sox1_MA0870.1	2	1	+	4.277854032485646	-2.630900746829575	AACACATAGATTGTG
chr16	74752202	74752203	chr16:74752203:G:A	rs4488477	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr16	74974449	74974450	chr16:74974450:A:C	rs4888327	A	C	C	Sox1_MA0870.1	12	1	-	5.063755958266086	11.972510737581306	GACAATATCAGTTTG
chr16	74984410	74984411	chr16:74984411:C:T	chr16:74984411:C:T	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	75022688	75022689	chr16:75022689:C:G	rs80209364	C	G	C	Sox1_MA0870.1	15	0	+	0	0	.
chr16	75147616	75147617	chr16:75147617:A:G	rs12929720	A	G	a	Sox1_MA0870.1	-5	0	+	0	0	.
chr16	75147655	75147656	chr16:75147656:T:C	rs8059411	T	C	t	Sox1_MA0870.1	34	0	+	0	0	.
chr16	75196331	75196332	chr16:75196332:C:T	rs1559362	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr16	75197770	75197771	chr16:75197771:C:T	rs889511	C	T	C	Sox1_MA0870.1	0	1	+	5.069549199111754	4.367172441964273	CAGAATACCATTGCA
chr16	75197772	75197773	chr16:75197773:G:A	rs55893049	G	A	G	Sox1_MA0870.1	2	1	+	5.069549199111754	5.069549199111754	CAGAATACCATTGCA
chr16	75212520	75212521	chr16:75212521:C:T	rs9927309	C	T	c	Sox1_MA0870.1	29	0	+	0	0	.
chr16	75219862	75219863	chr16:75219863:A:T	rs11149808	A	T	a	Sox1_MA0870.1	-17	0	+	0	0	.
chr16	75219873	75219874	chr16:75219874:T:C	rs150177990	T	C	t	Sox1_MA0870.1	-6	0	+	0	0	.
chr16	75219905	75219906	chr16:75219906:T:A	rs6564239	T	A	t	Sox1_MA0870.1	26	0	+	0	0	.
chr16	75221067	75221068	chr16:75221068:G:C	rs8048956	G	C	g	Sox1_MA0870.1	24	0	+	0	0	.
chr16	75310134	75310135	chr16:75310135:T:C	rs145212247	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr16	75310577	75310578	chr16:75310578:C:T	rs10514393	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr16	75337845	75337846	chr16:75337846:C:G	rs3863445	C	G	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	75605595	75605596	chr16:75605596:T:G	rs74750114	T	G	T	Sox1_MA0870.1	11	1	+	3.4738540806479596	-3.4288786062088725	AACACCCACATTGTT
chr16	75862033	75862034	chr16:75862034:T:C	rs62051618	T	C	T	Sox1_MA0870.1	1	1	-	3.576021832629942	-0.5222688227631986	AACCATGAGAGTGTC
chr16	75958131	75958132	chr16:75958132:G:A	rs1025898563	G	A	T	Sox1_MA0870.1	15	0	+	0	0	.
chr16	76345477	76345478	chr16:76345478:T:G	rs61368169	T	G	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr16	76345523	76345524	chr16:76345524:C:T	rs78786642	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr16	76446674	76446675	chr16:76446675:G:A	rs9930895	G	A	G	Sox1_MA0870.1	8	1	-	4.76767772924954	0.5860681826122579	CTCAAGGACATTGTT
chr16	76487630	76487631	chr16:76487631:T:C	rs12926636	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr16	76849059	76849060	chr16:76849060:C:G	rs74443760	C	G	C	Sox1_MA0870.1	30	0	+	0	0	.
chr16	76960616	76960617	chr16:76960617:A:C	rs1502425	A	C	A	Sox1_MA0870.1	12	1	-	3.2004308402045414	10.109185619519762	AACACTGCCATTTCC
chr16	77043391	77043392	chr16:77043392:G:A	rs285006	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr16	77043428	77043429	chr16:77043429:T:A	rs285007	T	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr16	77093802	77093803	chr16:77093803:A:T	rs35050281	A	T	A	Sox1_MA0870.1	30	0	-	0	0	.
chr16	77190180	77190181	chr16:77190181:T:A	rs11860898	T	A	T	Sox1_MA0870.1	3	1	-	3.7699570022705413	-1.7443383038067939	CACACTTCGAGTGAT
chr16	77290962	77290963	chr16:77290963:A:G	rs540037553	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr16	77290973	77290974	chr16:77290974:C:T	rs80060947	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr16	77575593	77575594	chr16:77575594:A:G	rs8047703	A	G	A	Sox1_MA0870.1	9	1	+	4.9895673364221995	-1.9191874428930213	AACTTTATCATTGTT
chr16	77680307	77680308	chr16:77680308:G:A	rs11150012	G	A	G	Sox1_MA0870.1	8	1	-	4.818254520263975	0.6366449736266921	CACAAATCCATTGAA
chr16	77834931	77834932	chr16:77834932:A:T	chr16:77834932:A:T	A	T	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr16	77927060	77927061	chr16:77927061:C:T	rs76670501	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	77967446	77967447	chr16:77967447:T:C	rs422508	T	C	T	Sox1_MA0870.1	10	1	+	8.195030819903508	1.3863337357671752	AACAATATCATTTCT
chr16	77971635	77971636	chr16:77971636:C:T	rs111366	C	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr16	77975674	77975675	chr16:77975675:A:G	rs422848	A	G	G	Sox1_MA0870.1	1	1	+	4.211028869242802	0.11273821384966132	AACACTAAGAGTGGA
chr16	77975695	77975696	chr16:77975696:C:T	rs56044923	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr16	77988084	77988085	chr16:77988085:A:C	chr16:77988085:A:C	A	C	A	Sox1_MA0870.1	29	0	-	0	0	.
chr16	78052278	78052279	chr16:78052279:A:C	rs8062376	A	C	a	Sox1_MA0870.1	22	0	+	0	0	.
chr16	78092422	78092423	chr16:78092423:G:C	rs34967858	G	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr16	78148330	78148331	chr16:78148331:G:C	rs11648242	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr16	78163912	78163913	chr16:78163913:C:T	rs62045117	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr16	78198487	78198488	chr16:78198488:G:A	rs889418	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr16	78211397	78211398	chr16:78211398:G:A	rs80046441	G	A	G	Sox1_MA0870.1	13	1	-	4.617372769200656	6.79502806665165	GACAAGATCAGTGCT
chr16	78222144	78222145	chr16:78222145:G:A	rs13333436	G	A	G	Sox1_MA0870.1	7	1	-	7.503785333955404	7.491956281407031	GAAAATGCCATTGTT
chr16	78238536	78238537	chr16:78238537:A:G	rs148870459	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr16	78249364	78249365	chr16:78249365:G:A	rs34351028	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr16	78290144	78290145	chr16:78290145:C:T	rs9921980	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr16	78365242	78365243	chr16:78365243:T:G	rs4888787	T	G	t	Sox1_MA0870.1	5	1	+	5.194932483411117	-1.7082322752366417	GACATTATCAGTGTG
chr16	78415277	78415278	chr16:78415278:G:A	rs118099983	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr16	78428127	78428128	chr16:78428128:A:G	rs4597339	A	G	G	Sox1_MA0870.1	31	0	-	0	0	.
chr16	78432860	78432861	chr16:78432861:A:C	rs3764342	A	C	A	Sox1_MA0870.1	6	1	+	5.204975937564372	-0.18422306526882992	AGTAATAACATTGTC
chr16	78488599	78488600	chr16:78488600:G:C	chr16:78488600:G:C	G	C	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	78563417	78563418	chr16:78563418:T:C	rs16948096	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr16	78572204	78572205	chr16:78572205:G:C	rs947095561	G	C	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr16	78597040	78597041	chr16:78597041:C:T	rs77752107	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr16	78683691	78683692	chr16:78683692:A:G	rs7193282	A	G	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr16	78763185	78763186	chr16:78763186:G:A	rs4888844	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr16	78768871	78768872	chr16:78768872:C:T	rs74889352	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	78912489	78912490	chr16:78912490:A:G	rs16948847	A	G	A	Sox1_MA0870.1	4	1	+	9.55594104582444	2.778362791654254	GTCAATTGCATTGCT
chr16	78927975	78927976	chr16:78927976:T:G	rs9936628	T	G	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr16	78947638	78947639	chr16:78947639:G:A	rs74032448	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	79025228	79025229	chr16:79025229:C:G	rs905781	C	G	c	Sox1_MA0870.1	-20	0	-	0	0	.
chr16	79078040	79078041	chr16:79078041:C:G	rs12716866	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr16	79130922	79130923	chr16:79130923:A:G	rs9646321	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	79130953	79130954	chr16:79130954:G:A	rs9646322	G	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr16	79165212	79165213	chr16:79165213:T:C	rs1110544	T	C	T	Sox1_MA0870.1	9	1	-	8.848818799579373	1.9400640202641517	GTCACTAGCATTGTA
chr16	79166580	79166581	chr16:79166581:A:G	rs11150141	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr16	79210198	79210199	chr16:79210199:T:A	rs11150144	T	A	A	Sox1_MA0870.1	10	1	+	5.647916090011538	-1.1607809941247953	ACCAACTCCATTGTT
chr16	79261795	79261796	chr16:79261796:C:G	chr16:79261796:C:G	C	G	C	Sox1_MA0870.1	8	1	+	10.109733607078107	6.339230614177769	GACAATTTCATTGAC
chr16	79279937	79279938	chr16:79279938:T:C	rs906797	T	C	C	Sox1_MA0870.1	34	0	-	0	0	.
chr16	79322620	79322621	chr16:79322621:G:T	rs17797562	G	T	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	79327303	79327304	chr16:79327304:C:T	rs1876763	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	79438956	79438957	chr16:79438957:A:C	rs7190849	A	C	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr16	79470133	79470134	chr16:79470134:G:C	rs532814172	G	C	G	Sox1_MA0870.1	18	0	+	0	0	.
chr16	79508959	79508960	chr16:79508960:A:T	rs72804473	A	T	A	Sox1_MA0870.1	7	1	-	4.323498960441105	4.76508884052552	AGCACTTTCAGTGCC
chr16	79593433	79593434	chr16:79593434:G:T	rs75846970	G	T	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr16	79613261	79613262	chr16:79613262:T:C	rs13337738	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr16	79674153	79674154	chr16:79674154:T:C	rs8051069	T	C	T	Sox1_MA0870.1	13	1	+	5.565533045332855	3.387877747881861	ACCTATTACATTGTA
chr16	79804775	79804776	chr16:79804776:G:C	rs11648855	G	C	G	Sox1_MA0870.1	23	0	+	0	0	.
chr16	79959609	79959610	chr16:79959610:G:T	rs4889058	G	T	T	Sox1_MA0870.1	4	1	-	7.8469611609976955	9.803774095622913	CCCACTTCCATTGTC
chr16	80117768	80117769	chr16:80117769:T:C	rs10514481	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr16	80178083	80178084	chr16:80178084:A:G	rs11646831	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr16	80405615	80405616	chr16:80405616:T:G	rs62050390	T	G	T	Sox1_MA0870.1	9	1	-	3.7903373417656563	-3.1184174375495646	AGCAATTTCATTCTC
chr16	80507487	80507488	chr16:80507488:G:T	rs11649447	G	T	T	Sox1_MA0870.1	12	1	+	3.8853959667932774	-3.0233588125219426	GACAAAGTGATTGTG
chr16	80512075	80512076	chr16:80512076:A:G	rs11150289	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr16	80664968	80664969	chr16:80664969:T:A	rs11644277	T	A	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	80674255	80674256	chr16:80674256:T:C	rs186512290	T	C	T	Sox1_MA0870.1	9	1	-	3.973247599712606	-2.9355071796026144	GACACGTGCATTGCT
chr16	80719843	80719844	chr16:80719844:A:G	rs3100180	A	G	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr16	80752726	80752727	chr16:80752727:G:T	rs888549780	G	T	G	Sox1_MA0870.1	19	0	-	0	0	.
chr16	80808033	80808034	chr16:80808034:T:C	rs12446476	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr16	80841445	80841446	chr16:80841446:T:C	rs112418011	T	C	T	Sox1_MA0870.1	9	1	-	3.41222618488431	-3.4965285944309104	GTCATTTCCATTGTC
chr16	80901706	80901707	chr16:80901707:C:T	rs58518093	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	80927762	80927763	chr16:80927763:A:G	rs2161295	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr16	80947778	80947779	chr16:80947779:A:G	rs8062425	A	G	A	Sox1_MA0870.1	3	1	+	4.692254017543744	-2.208335649653482	ACCATTTACATTGTC
chr16	80993511	80993512	chr16:80993512:A:G	rs2602450	A	G	G	Sox1_MA0870.1	27	0	-	0	0	.
chr16	80993536	80993537	chr16:80993537:G:A	rs2549860	G	A	A	Sox1_MA0870.1	2	1	-	7.205345219214719	0.29659043989949907	GACTATGGCATTGTG
chr16	81080413	81080414	chr16:81080414:G:A	rs16954580	G	A	G	Sox1_MA0870.1	6	1	+	5.122453856466499	6.661060549607217	ATCAATGACAGTGGA
chr16	81148502	81148503	chr16:81148503:A:G	rs9940095	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr16	81148511	81148512	chr16:81148512:G:C	rs9929059	G	C	G	Sox1_MA0870.1	12	1	-	4.256539290987665	11.165294070302886	AACAAAGACATTCTT
chr16	81177308	81177309	chr16:81177309:T:G	rs8049408	T	G	T	Sox1_MA0870.1	13	1	-	11.45185674988486	12.619727479023023	AACAATTTCATTGAC
chr16	81190977	81190978	chr16:81190978:G:C	rs533268033	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr16	81514081	81514082	chr16:81514082:T:G	rs8182218	T	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr16	81522716	81522717	chr16:81522717:G:C	rs2966103	G	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr16	81540026	81540027	chr16:81540027:C:T	rs2168798	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	81672925	81672926	chr16:81672926:G:A	rs13334224	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr16	81721207	81721208	chr16:81721208:A:G	rs564558913	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr16	81782974	81782975	chr16:81782975:C:G	rs6564919	C	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	81943099	81943100	chr16:81943100:T:G	rs4640176	T	G	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	82124673	82124674	chr16:82124674:C:A	rs6564969	C	A	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr16	82147396	82147397	chr16:82147397:T:A	rs4888207	T	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr16	82188001	82188002	chr16:82188002:C:G	rs10514534	C	G	C	Sox1_MA0870.1	31	0	-	0	0	.
chr16	82188022	82188023	chr16:82188023:A:G	rs2911407	A	G	A	Sox1_MA0870.1	10	1	-	3.314013049817687	-3.4946840343186465	CACAGTGACATTGAC
chr16	82197966	82197967	chr16:82197967:C:G	rs142415206	C	G	C	Sox1_MA0870.1	17	0	-	0	0	.
chr16	82197973	82197974	chr16:82197974:A:G	rs2911412	A	G	A	Sox1_MA0870.1	10	1	-	9.34006833557611	2.5313712514397766	CTCAATGCCATTGTA
chr16	82258454	82258455	chr16:82258455:A:G	rs77363952	A	G	G	Sox1_MA0870.1	9	1	+	4.154633714030246	-2.754121065284975	GACATTTGCATTGCA
chr16	82360752	82360753	chr16:82360753:C:T	rs74922812	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr16	82428681	82428682	chr16:82428682:G:T	rs8062866	G	T	T	Sox1_MA0870.1	18	0	-	0	0	.
chr16	82498872	82498873	chr16:82498873:G:T	rs55878175	G	T	G	Sox1_MA0870.1	18	0	-	0	0	.
chr16	82594816	82594817	chr16:82594817:G:A	rs16957828	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr16	82654265	82654266	chr16:82654266:C:G	rs941760596	C	G	C	Sox1_MA0870.1	4	1	+	4.822631209032933	0.0018658894879585164	GACACTTACATGGTG
chr16	82675555	82675556	chr16:82675556:G:A	rs16958140	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr16	82677690	82677691	chr16:82677691:G:C	rs1560735	G	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr16	82756102	82756103	chr16:82756103:T:C	rs4783264	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr16	82780231	82780232	chr16:82780232:C:A	rs12925326	C	A	A	Sox1_MA0870.1	8	1	+	5.238644185766844	-0.6545254685513687	TACAACAACATTGGT
chr16	82807172	82807173	chr16:82807173:C:A	rs12927934	C	A	C	Sox1_MA0870.1	15	0	+	0	0	.
chr16	82867763	82867764	chr16:82867764:T:A	rs9319576	T	A	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr16	82867771	82867772	chr16:82867772:C:T	rs72790103	C	T	c	Sox1_MA0870.1	-11	0	-	0	0	.
chr16	83001467	83001468	chr16:83001468:A:G	rs188559095	A	G	A	Sox1_MA0870.1	2	1	+	5.431955830756183	5.431955830756183	CAAAATGCCATTGCT
chr16	83070693	83070694	chr16:83070694:T:C	rs4783320	T	C	T	Sox1_MA0870.1	10	1	+	6.2874843568019285	-0.5212127273344045	TTCAATTACATTGAA
chr16	83070701	83070702	chr16:83070702:A:C	rs8063680	A	C	A	Sox1_MA0870.1	18	0	+	0	0	.
chr16	83071215	83071216	chr16:83071216:A:G	rs28426984	A	G	A	Sox1_MA0870.1	13	1	-	5.966826676809568	3.789171379358573	CACAATTGCTGTGTT
chr16	83116726	83116727	chr16:83116727:C:G	rs79886005	C	G	C	Sox1_MA0870.1	12	1	-	4.996388262692918	-1.9123665166223023	AACACAGTGATTGTT
chr16	83223458	83223459	chr16:83223459:A:C	rs72802232	A	C	A	Sox1_MA0870.1	27	0	+	0	0	.
chr16	83225647	83225648	chr16:83225648:C:T	rs750146	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	83390767	83390768	chr16:83390768:G:T	rs1424176	G	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr16	83390774	83390775	chr16:83390775:T:A	rs1424177	T	A	T	Sox1_MA0870.1	22	0	+	0	0	.
chr16	83420588	83420589	chr16:83420589:T:C	rs13337525	T	C	T	Sox1_MA0870.1	10	1	+	4.833708932869889	-1.974988151266445	ACCATTATCATTGTA
chr16	83486376	83486377	chr16:83486377:G:T	rs17686433	G	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr16	83494416	83494417	chr16:83494417:A:G	rs1387370	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr16	83498730	83498731	chr16:83498731:G:A	rs4378602	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr16	83552576	83552577	chr16:83552577:T:C	rs12918411	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr16	83728435	83728436	chr16:83728436:C:G	rs72799117	C	G	C	Sox1_MA0870.1	26	0	-	0	0	.
chr16	83833494	83833495	chr16:83833495:A:G	rs76361064	A	G	A	Sox1_MA0870.1	0	1	+	6.562003218304441	5.219880075497688	ATCAATGGGATTGCT
chr16	83833498	83833499	chr16:83833499:A:G	rs75678411	A	G	A	Sox1_MA0870.1	4	1	+	6.562003218304441	-0.215575035865749	ATCAATGGGATTGCT
chr16	83842565	83842566	chr16:83842566:T:C	rs366495	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr16	83928361	83928362	chr16:83928362:G:A	rs72791547	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr16	83936277	83936278	chr16:83936278:G:A	rs9889086	G	A	a	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	83996636	83996637	chr16:83996637:C:G	rs17723451	C	G	C	Sox1_MA0870.1	8	1	+	4.370657999300041	0.6001550063997041	GACACTTACATGGCT
chr16	84061648	84061649	chr16:84061649:G:C	rs999781	G	C	G	Sox1_MA0870.1	26	0	-	0	0	.
chr16	84172778	84172779	chr16:84172779:G:A	rs1035558	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr16	84261226	84261227	chr16:84261227:C:G	rs117811752	C	G	C	Sox1_MA0870.1	0	1	+	5.581119928727316	5.475294134475543	CTCACTAAGATTGTA
chr16	84302970	84302971	chr16:84302971:A:G	rs12599383	A	G	A	Sox1_MA0870.1	9	1	+	14.842300940806666	7.933546161491446	GACAATGACATTGTT
chr16	84399109	84399110	chr16:84399110:G:T	chr16:84399110:G:T	G	T	.	Sox1_MA0870.1	-8	0	+	0	0	.
chr16	84418597	84418598	chr16:84418598:C:G	rs941684968	C	G	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr16	84462968	84462969	chr16:84462969:G:A	rs749977357	G	A	G	Sox1_MA0870.1	13	1	-	4.004961418845895	6.18261671629689	CACACTGACACTGCT
chr16	84501748	84501749	chr16:84501749:A:G	rs4782983	A	G	G	Sox1_MA0870.1	16	0	-	0	0	.
chr16	84501759	84501760	chr16:84501760:A:G	rs72808609	A	G	A	Sox1_MA0870.1	5	1	-	4.459910750487136	-2.4432540081606224	AAGAATGGCAGTGCT
chr16	84515592	84515593	chr16:84515593:G:C	rs4782992	G	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr16	84544675	84544676	chr16:84544676:C:T	rs7205203	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr16	84544684	84544685	chr16:84544685:C:T	rs190451731	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr16	84544693	84544694	chr16:84544694:C:T	rs117659656	C	T	C	Sox1_MA0870.1	2	1	+	6.578400656254688	-0.3303541230605319	AACCATGTCATTGCA
chr16	84554353	84554354	chr16:84554354:G:T	rs2013847	G	T	G	Sox1_MA0870.1	31	0	+	0	0	.
chr16	84569476	84569477	chr16:84569477:G:A	rs11640701	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	84603562	84603563	chr16:84603563:G:C	rs113607564	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr16	84603567	84603568	chr16:84603568:A:C	rs4782640	A	C	A	Sox1_MA0870.1	11	1	-	3.487846503281694	-3.414886183575138	AACACTTCCTGTGTG
chr16	84668490	84668491	chr16:84668491:C:G	rs11149673	C	G	C	Sox1_MA0870.1	8	1	+	6.475370824643794	2.704867831743457	AACAATATCATGGCG
chr16	84724903	84724904	chr16:84724904:C:T	rs16974453	C	T	C	Sox1_MA0870.1	0	1	+	5.298697607278655	4.596320850131175	CACACAATGATTGTT
chr16	84881457	84881458	chr16:84881458:A:T	rs2172622	A	T	A	Sox1_MA0870.1	27	0	-	0	0	.
chr16	84898685	84898686	chr16:84898686:G:A	rs73255428	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr16	84898688	84898689	chr16:84898689:A:G	rs78054218	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr16	84919422	84919423	chr16:84919423:G:C	rs74031069	G	C	G	Sox1_MA0870.1	10	1	+	6.143167577563587	1.5755954219908137	GACAATCCCAGTGCT
chr16	85041528	85041529	chr16:85041529:A:G	rs9319454	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr16	85186081	85186082	chr16:85186082:C:G	rs7198356	C	G	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr16	85310421	85310422	chr16:85310422:T:A	chr16:85310422:T:A	T	A	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr16	85350793	85350794	chr16:85350794:C:T	rs11642889	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr16	85414331	85414332	chr16:85414332:A:G	rs6564118	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr16	85480266	85480267	chr16:85480267:T:A	rs2018338	T	A	T	Sox1_MA0870.1	34	0	+	0	0	.
chr16	85579010	85579011	chr16:85579011:A:G	rs9937814	A	G	A	Sox1_MA0870.1	10	1	-	5.876647388999565	-0.9320496951367688	CCCACTGACATTGAT
chr16	85610567	85610568	chr16:85610568:A:G	rs186969294	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr16	85625548	85625549	chr16:85625549:C:T	rs115699663	C	T	C	Sox1_MA0870.1	12	1	-	3.6430292903326693	-3.2657254889825507	CACAACAGCATTGGA
chr16	85628858	85628859	chr16:85628859:A:G	rs74475984	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr16	86028064	86028065	chr16:86028065:A:G	rs28395189	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr16	86043770	86043771	chr16:86043771:A:G	rs4843895	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr16	86048782	86048783	chr16:86048783:A:G	rs35781150	A	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr16	86083770	86083771	chr16:86083771:C:T	rs4078427	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr16	86104963	86104964	chr16:86104964:C:A	rs11648565	C	A	A	Sox1_MA0870.1	19	0	-	0	0	.
chr16	86104987	86104988	chr16:86104988:G:T	rs11644523	G	T	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	86243053	86243054	chr16:86243054:C:A	rs1181796701	C	A	C	Sox1_MA0870.1	23	0	+	0	0	.
chr16	86243505	86243506	chr16:86243506:T:A	rs1704502	T	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr16	86290110	86290111	chr16:86290111:T:C	rs13335682	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr16	86392586	86392587	chr16:86392587:T:C	rs3108511	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr16	86578419	86578420	chr16:86578420:G:C	rs552979239	G	C	G	Sox1_MA0870.1	28	0	-	0	0	.
chr16	86586921	86586922	chr16:86586922:A:T	rs7192043	A	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr16	86636610	86636611	chr16:86636611:T:C	rs1562107	T	C	C	Sox1_MA0870.1	3	1	-	10.247384749821382	3.3467950826241557	GACACTGGCAGTGTT
chr16	86665481	86665482	chr16:86665482:T:C	rs34076489	T	C	C	Sox1_MA0870.1	14	1	+	7.418914064851869	5.907904660370464	AACACTGACAATGTT
chr16	86673188	86673189	chr16:86673189:G:T	rs35285681	G	T	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr16	86673260	86673261	chr16:86673261:T:A	rs60933831	T	A	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr16	86752467	86752468	chr16:86752468:T:C	rs16942051	T	C	C	Sox1_MA0870.1	14	1	+	4.725267929358785	3.2142585248773807	ACCAAAGCCAGTGTT
chr16	86885335	86885336	chr16:86885336:C:G	rs73254789	C	G	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr16	86955741	86955742	chr16:86955742:G:A	rs11647668	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr16	87039393	87039394	chr16:87039394:G:C	rs2161645	G	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr16	87054569	87054570	chr16:87054570:G:A	rs895420	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr16	87271566	87271567	chr16:87271567:C:T	chr16:87271567:C:T	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	87296442	87296443	chr16:87296443:C:A	rs7206406	C	A	C	Sox1_MA0870.1	2	1	+	3.508981031577342	-3.399773747737877	CACCCTGCCAGTGTG
chr16	87316979	87316980	chr16:87316980:G:C	rs146038096	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr16	87318574	87318575	chr16:87318575:C:T	rs874441	C	T	T	Sox1_MA0870.1	4	1	+	2.8164490123591874	-2.004316307185784	AACACTGCCATAGCA
chr16	87318577	87318578	chr16:87318578:C:T	rs874440	C	T	C	Sox1_MA0870.1	7	1	+	2.8164490123591874	2.804619959810814	AACACTGCCATAGCA
chr16	87319044	87319045	chr16:87319045:A:G	rs79302402	A	G	A	Sox1_MA0870.1	4	1	-	4.537205245934128	9.3579705654791	CCCATTTCCATTGTT
chr16	87327786	87327787	chr16:87327787:G:A	rs2278270	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr16	87388112	87388113	chr16:87388113:G:A	rs139479773	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr16	87550289	87550290	chr16:87550290:T:G	rs115496920	T	G	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr16	87550293	87550294	chr16:87550294:T:C	rs12924061	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr16	87660028	87660029	chr16:87660029:A:G	rs9934868	A	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr16	87717579	87717580	chr16:87717580:C:A	rs8054180	C	A	A	Sox1_MA0870.1	8	1	+	4.696605517255474	-1.1965641370627393	TGCAATTCCAGTGAT
chr16	87938988	87938989	chr16:87938989:T:C	rs57092691	T	C	t	Sox1_MA0870.1	7	1	+	6.733510150679318	6.745339203227691	GGCACTTTCATTGCT
chr16	88064078	88064079	chr16:88064079:C:G	rs7500095	C	G	C	Sox1_MA0870.1	27	0	+	0	0	.
chr16	88159769	88159770	chr16:88159770:A:G	rs7500405	A	G	-	Sox1_MA0870.1	-7	0	-	0	0	.
chr16	88221947	88221948	chr16:88221948:A:G	rs9926682	A	G	-	Sox1_MA0870.1	23	0	+	0	0	.
chr16	88352201	88352202	chr16:88352202:C:T	rs565731568	C	T	c	Sox1_MA0870.1	20	0	-	0	0	.
chr16	88366773	88366774	chr16:88366774:G:A	rs1031440937	G	A	-	Sox1_MA0870.1	-18	0	+	0	0	.
chr16	88632696	88632697	chr16:88632697:T:A	rs8047524	T	A	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr16	88782718	88782719	chr16:88782719:G:A	rs939872712	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr16	88810985	88810986	chr16:88810986:G:C	rs8191480	G	C	G	Sox1_MA0870.1	31	0	-	0	0	.
chr16	88810997	88810998	chr16:88810998:A:T	rs8191479	A	T	A	Sox1_MA0870.1	19	0	-	0	0	.
chr16	88811020	88811021	chr16:88811021:G:A	rs8191478	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr16	89124729	89124730	chr16:89124730:C:T	rs8050455	C	T	-	Sox1_MA0870.1	34	0	-	0	0	.
chr16	89202443	89202444	chr16:89202444:C:A	rs8063985	C	A	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr16	89243776	89243777	chr16:89243777:C:T	rs72821327	C	T	C	Sox1_MA0870.1	13	1	+	3.93250101232632	6.110156309777315	CACACTAACATTTCC
chr16	89261908	89261909	chr16:89261909:C:G	rs117061705	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr16	89261937	89261938	chr16:89261938:C:G	rs72821337	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr16	89343311	89343312	chr16:89343312:G:C	rs3102381	G	C	G	Sox1_MA0870.1	1	1	+	4.045099585946174	4.374249856494816	AGCAATACCTGTGTT
chr16	89344601	89344602	chr16:89344602:C:A	rs3096296	C	A	C	Sox1_MA0870.1	3	1	-	4.4277959008960295	5.81409026201592	GACGCTTGCATTGTG
chr16	89454043	89454044	chr16:89454044:A:G	rs2965949	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr16	89454052	89454053	chr16:89454053:A:T	rs578066839	A	T	A	Sox1_MA0870.1	25	0	-	0	0	.
chr16	89475355	89475356	chr16:89475356:G:C	rs74037207	G	C	G	Sox1_MA0870.1	30	0	+	0	0	.
chr16	89478227	89478228	chr16:89478228:C:T	rs3803682	C	T	C	Sox1_MA0870.1	4	1	+	4.017468381263718	-0.803296938281253	AACACTCCCAGTGCC
chr16	89689494	89689495	chr16:89689495:A:G	rs258322	A	G	G	Sox1_MA0870.1	9	1	+	5.5687902568720995	-1.3399645224431216	ATCACAAACATTGTA
chr16	89694550	89694551	chr16:89694551:C:G	rs56380063	C	G	C	Sox1_MA0870.1	21	0	-	0	0	.
chr16	90040688	90040689	chr16:90040689:A:G	rs9922171	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr17	148163	148164	chr17:148164:C:T	rs9286394	C	T	.	Sox1_MA0870.1	21	0	-	0	0	.
chr17	195575	195576	chr17:195576:T:C	rs1108857	T	C	.	Sox1_MA0870.1	5	1	+	3.831952715669848	-3.0712120429779124	GCCCATGCCATTGTG
chr17	316628	316629	chr17:316629:C:G	rs112818877	C	G	-	Sox1_MA0870.1	29	0	+	0	0	.
chr17	751708	751709	chr17:751709:C:T	rs747781445	C	T	C	Sox1_MA0870.1	14	1	+	4.707346766526973	6.218356171008377	CACACTTCCATTCTC
chr17	784893	784894	chr17:784894:A:G	rs11654474	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	887636	887637	chr17:887637:T:C	rs374840758	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr17	909292	909293	chr17:909293:G:T	rs9893860	G	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	909293	909294	chr17:909294:C:T	rs9915645	C	T	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr17	981277	981278	chr17:981278:C:A	rs62068282	C	A	C	Sox1_MA0870.1	27	0	-	0	0	.
chr17	1110663	1110664	chr17:1110664:C:G	rs3813437	C	G	C	Sox1_MA0870.1	2	1	+	5.129699341289717	-1.7790554380255037	TGCAATTCCATTGGC
chr17	1193500	1193501	chr17:1193501:A:G	rs8069303	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr17	1259416	1259417	chr17:1259417:C:G	chr17:1259417:C:G	C	G	C	Sox1_MA0870.1	12	1	-	3.63008024816483	-3.278674531150391	AACAAAACCATCGCC
chr17	1259435	1259436	chr17:1259436:C:T	rs906565	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	1305867	1305868	chr17:1305868:A:G	rs12936071	A	G	G	Sox1_MA0870.1	25	0	-	0	0	.
chr17	1367567	1367568	chr17:1367568:G:A	rs539900665	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr17	1897048	1897049	chr17:1897049:A:G	rs377507165	A	G	a	Sox1_MA0870.1	19	0	+	0	0	.
chr17	1939395	1939396	chr17:1939396:T:C	rs4430781	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr17	2030904	2030905	chr17:2030905:T:G	rs11078780	T	G	T	Sox1_MA0870.1	27	0	+	0	0	.
chr17	2094149	2094150	chr17:2094150:G:C	rs4061659	G	C	G	Sox1_MA0870.1	12	1	+	6.696942200891723	-0.21181257842349765	CACAATTGCCTTGTC
chr17	2164442	2164443	chr17:2164443:C:A	rs9892559	C	A	A	Sox1_MA0870.1	13	1	+	5.297058377240945	4.129187648102779	AACAATGACAATGCA
chr17	2304130	2304131	chr17:2304131:C:T	rs12450028	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr17	2359374	2359375	chr17:2359375:C:T	rs138434027	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr17	2482448	2482449	chr17:2482449:A:G	rs73300215	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr17	2635645	2635646	chr17:2635646:A:C	rs34471859	A	C	A	Sox1_MA0870.1	30	0	-	0	0	.
chr17	2891561	2891562	chr17:2891562:A:G	rs9907411	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr17	2937636	2937637	chr17:2937637:C:T	rs1530378	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr17	2982431	2982432	chr17:2982432:C:T	rs112396368	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr17	2982453	2982454	chr17:2982454:T:C	rs111267603	T	C	T	Sox1_MA0870.1	11	1	+	12.110454317766646	7.155059331956313	AACACTTTCAGTGTT
chr17	2982470	2982471	chr17:2982471:G:A	chr17:2982471:G:A	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr17	2983475	2983476	chr17:2983476:A:T	rs76529650	A	T	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr17	3030341	3030342	chr17:3030342:A:G	rs73300937	A	G	A	Sox1_MA0870.1	10	1	-	4.025419650731367	-2.7832774334049666	AGCGATTACATTGTG
chr17	3036238	3036239	chr17:3036239:T:C	rs8071148	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	3480348	3480349	chr17:3480349:C:G	rs9899946	C	G	G	Sox1_MA0870.1	12	1	-	5.65933212114361	-1.2494226581716115	AAAAATTCCAGTGTC
chr17	3745237	3745238	chr17:3745238:T:G	rs34715307	T	G	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr17	3959357	3959358	chr17:3959358:C:G	rs60667675	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	3959380	3959381	chr17:3959381:G:A	rs58808051	G	A	G	Sox1_MA0870.1	14	1	+	3.493868595740082	3.318537358673038	AACACTTCCAGGGTG
chr17	4186900	4186901	chr17:4186901:G:A	rs34188453	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr17	4186906	4186907	chr17:4186907:A:G	rs78871641	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr17	4284644	4284645	chr17:4284645:T:C	rs4322703	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr17	4405781	4405782	chr17:4405782:C:T	rs35074337	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr17	4429748	4429749	chr17:4429749:A:T	rs58567065	A	T	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr17	4515255	4515256	chr17:4515256:G:A	rs4790638	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr17	4648266	4648267	chr17:4648267:C:T	rs749302	C	T	C	Sox1_MA0870.1	2	1	+	6.133497006583147	-0.7752577727320759	AACTCTACCATTGCC
chr17	4722790	4722791	chr17:4722791:C:T	rs67966027	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr17	4858099	4858100	chr17:4858100:T:C	rs79248783	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr17	4898298	4898299	chr17:4898299:C:G	rs3514	C	G	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr17	4947824	4947825	chr17:4947825:C:T	chr17:4947825:C:T	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr17	5243099	5243100	chr17:5243100:G:A	rs12600921	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr17	5365836	5365837	chr17:5365837:G:A	rs8081520	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr17	5392078	5392079	chr17:5392079:C:T	rs1806237	C	T	c	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	5413687	5413688	chr17:5413688:A:C	rs1806261	A	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr17	5662142	5662143	chr17:5662143:G:A	rs7221898	G	A	A	Sox1_MA0870.1	13	1	+	3.105667253339725	3.402688953387639	ACCAATAGCAATGGT
chr17	5675536	5675537	chr17:5675537:C:T	rs9893797	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	5718912	5718913	chr17:5718913:G:C	rs1008377	G	C	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	5815160	5815161	chr17:5815161:G:A	rs4985637	G	A	G	Sox1_MA0870.1	4	1	-	2.94326711481922	-1.877498204725752	AACACTGGCAATGCA
chr17	5824801	5824802	chr17:5824802:C:T	rs9907625	C	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr17	5828276	5828277	chr17:5828277:G:A	rs9916878	G	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr17	5828289	5828290	chr17:5828290:C:T	rs9890859	C	T	c	Sox1_MA0870.1	21	0	-	0	0	.
chr17	5830033	5830034	chr17:5830034:T:C	rs9912593	T	C	c	Sox1_MA0870.1	9	1	-	8.48257926165491	1.57382448233969	AACAAAGTCAGTGTT
chr17	5842706	5842707	chr17:5842707:G:A	rs4506957	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr17	5897510	5897511	chr17:5897511:G:A	rs7217128	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	6093823	6093824	chr17:6093824:G:A	rs7225181	G	A	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr17	6132137	6132138	chr17:6132138:C:A	rs547118993	C	A	C	Sox1_MA0870.1	23	0	-	0	0	.
chr17	6160160	6160161	chr17:6160161:G:A	rs16955549	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr17	6161560	6161561	chr17:6161561:G:A	chr17:6161561:G:A	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr17	6164796	6164797	chr17:6164797:C:T	rs756316	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr17	6219865	6219866	chr17:6219866:G:A	rs116116946	G	A	G	Sox1_MA0870.1	0	1	+	5.296133328662343	6.638256471469097	GACAAGAATATTGTT
chr17	6386298	6386299	chr17:6386299:T:C	rs10852877	T	C	C	Sox1_MA0870.1	6	1	-	6.5790252409236425	5.040418547782925	GACTCTACCATTGTA
chr17	6386304	6386305	chr17:6386305:C:T	rs142196739	C	T	C	Sox1_MA0870.1	0	1	-	6.5790252409236425	7.921148383730396	GACTCTACCATTGTA
chr17	6413241	6413242	chr17:6413242:A:G	rs56161371	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr17	6645409	6645410	chr17:6645410:G:A	rs7214691	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr17	6700204	6700205	chr17:6700205:T:C	rs8080021	T	C	T	Sox1_MA0870.1	13	1	+	3.9055212181236967	1.7278659206727025	AACAATAACTTTTTT
chr17	7026232	7026233	chr17:7026233:T:C	rs4993974	T	C	T	Sox1_MA0870.1	4	1	-	6.226421440893397	-0.5511568132767916	TTCAATAGCAGTGGT
chr17	7139026	7139027	chr17:7139027:A:C	chr17:7139027:A:C	A	C	A	Sox1_MA0870.1	3	1	+	3.682216938120418	-1.403547986917757	TGCACTGCCATTGCA
chr17	7314624	7314625	chr17:7314625:G:A	rs62059197	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	7489330	7489331	chr17:7489331:C:G	rs3863497	C	G	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	7615486	7615487	chr17:7615487:C:T	rs77506065	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr17	7615507	7615508	chr17:7615508:A:G	rs777620506	A	G	A	Sox1_MA0870.1	10	1	-	5.541811142229837	-1.266885941906496	AAAACTTTCATTGTA
chr17	7615522	7615523	chr17:7615523:G:A	rs531874178	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr17	7686731	7686732	chr17:7686732:T:G	chr17:7686732:T:G	T	G	T	Sox1_MA0870.1	31	0	+	0	0	.
chr17	7767538	7767539	chr17:7767539:G:A	rs12946592	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr17	7913383	7913384	chr17:7913384:G:A	rs72841438	G	A	G	Sox1_MA0870.1	8	1	-	3.070499234095058	-1.1111103125422237	GCCAACAGCAGTGTT
chr17	8059323	8059324	chr17:8059324:C:G	rs73239913	C	G	C	Sox1_MA0870.1	14	1	+	3.1413134140708436	2.9266407308341447	ACCACCATCATTGTC
chr17	8621457	8621458	chr17:8621458:C:A	rs145186770	C	A	C	Sox1_MA0870.1	31	0	-	0	0	.
chr17	8744639	8744640	chr17:8744640:G:A	rs117415797	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr17	8747040	8747041	chr17:8747041:A:G	rs78342095	A	G	a	Sox1_MA0870.1	15	0	-	0	0	.
chr17	8915767	8915768	chr17:8915768:G:A	rs117629234	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr17	9053079	9053080	chr17:9053080:C:G	rs75357705	C	G	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	9065288	9065289	chr17:9065289:C:T	rs9904139	C	T	c	Sox1_MA0870.1	33	0	+	0	0	.
chr17	9405152	9405153	chr17:9405153:A:G	rs56276894	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr17	9433340	9433341	chr17:9433341:A:G	rs9916292	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	9456458	9456459	chr17:9456459:T:C	rs9911856	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr17	9566323	9566324	chr17:9566324:A:G	rs12453562	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr17	9794709	9794710	chr17:9794710:A:C	rs3915464	A	C	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr17	9841921	9841922	chr17:9841922:C:G	rs9905842	C	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr17	9906073	9906074	chr17:9906074:T:C	rs527686414	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr17	9992436	9992437	chr17:9992437:C:A	rs77728770	C	A	C	Sox1_MA0870.1	8	1	+	3.7582920442212924	-2.134877610096922	CACAAAAGCAGTGAG
chr17	10230064	10230065	chr17:10230065:A:G	rs12949353	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr17	10368316	10368317	chr17:10368317:G:A	rs12936552	G	A	G	Sox1_MA0870.1	0	1	+	4.088543872466423	5.430667015273176	GACAACCACATTGTT
chr17	10381397	10381398	chr17:10381398:C:T	rs17811017	C	T	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	10429918	10429919	chr17:10429919:C:T	rs7215212	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr17	10632866	10632867	chr17:10632867:A:G	rs2285478	A	G	A	Sox1_MA0870.1	10	1	-	4.2172634332454	-2.5914336508909335	GACTATTCCATTGAA
chr17	10645674	10645675	chr17:10645675:C:T	rs2239934	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr17	10748953	10748954	chr17:10748954:G:A	rs117523579	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr17	10773550	10773551	chr17:10773551:A:G	rs563416086	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr17	10809064	10809065	chr17:10809065:T:G	rs7214355	T	G	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	10844097	10844098	chr17:10844098:G:C	rs56005908	G	C	G	Sox1_MA0870.1	18	0	+	0	0	.
chr17	11356196	11356197	chr17:11356197:C:G	rs11867705	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr17	11493059	11493060	chr17:11493060:C:T	rs2908977	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr17	11707864	11707865	chr17:11707865:C:T	rs28710928	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr17	11767101	11767102	chr17:11767102:C:T	rs78622805	C	T	C	Sox1_MA0870.1	12	1	-	4.577139637304059	-2.331615142011162	CACACCGACATTGTC
chr17	11908832	11908833	chr17:11908833:G:A	rs9896353	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	12087361	12087362	chr17:12087362:A:G	rs10432016	A	G	A	Sox1_MA0870.1	9	1	+	4.980857175625647	-1.9278976036895732	AAAAATTTCAGTGCT
chr17	12090213	12090214	chr17:12090214:A:G	rs78094876	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr17	12323384	12323385	chr17:12323385:G:C	rs143385425	G	C	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr17	12492846	12492847	chr17:12492847:A:T	rs11654876	A	T	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr17	13133965	13133966	chr17:13133966:C:A	rs34827110	C	A	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	13351245	13351246	chr17:13351246:T:C	rs17573984	T	C	T	Sox1_MA0870.1	10	1	+	4.590738263031332	-2.217958821105001	GACAAATCCATTGGG
chr17	13529540	13529541	chr17:13529541:T:C	rs55906252	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr17	13775553	13775554	chr17:13775554:C:T	rs1867230	C	T	C	Sox1_MA0870.1	2	1	+	3.7722985940053424	-3.1364561853098785	TACAATTTCATTTCC
chr17	14024756	14024757	chr17:14024757:A:C	rs62052312	A	C	a	Sox1_MA0870.1	33	0	+	0	0	.
chr17	14068158	14068159	chr17:14068159:C:T	rs9904086	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr17	14068185	14068186	chr17:14068186:A:T	rs59531604	A	T	a	Sox1_MA0870.1	-9	0	-	0	0	.
chr17	14204088	14204089	chr17:14204089:C:T	rs186873480	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr17	14281906	14281907	chr17:14281907:G:A	rs8070987	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	14435385	14435386	chr17:14435386:A:G	rs4239128	A	G	G	Sox1_MA0870.1	5	1	-	6.713661143542947	-0.18950361510481262	TTCACTGGCATTGTA
chr17	14451404	14451405	chr17:14451405:T:G	rs7214552	T	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	14592413	14592414	chr17:14592414:T:G	rs78531403	T	G	T	Sox1_MA0870.1	15	0	-	0	0	.
chr17	14592437	14592438	chr17:14592438:A:G	rs78702249	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr17	14657895	14657896	chr17:14657896:A:G	rs12938222	A	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr17	14700530	14700531	chr17:14700531:T:C	rs16950246	T	C	t	Sox1_MA0870.1	9	1	-	4.500842514702242	-2.4079122646129782	AAAAATACCAGTGGT
chr17	14739708	14739709	chr17:14739709:T:G	rs62063007	T	G	T	Sox1_MA0870.1	10	1	+	7.266593656477114	5.025468727913553	AACAATTGCATTTCT
chr17	14811915	14811916	chr17:14811916:T:C	rs758552	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr17	14986325	14986326	chr17:14986326:G:A	rs8080728	G	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr17	15283360	15283361	chr17:15283361:A:G	rs1079975	A	G	G	Sox1_MA0870.1	11	1	-	4.169521591589167	-0.7858733942211672	AACAAAAACAATGTG
chr17	15332548	15332549	chr17:15332549:C:T	rs12452683	C	T	c	Sox1_MA0870.1	26	0	-	0	0	.
chr17	15332560	15332561	chr17:15332561:G:A	rs1380184	G	A	A	Sox1_MA0870.1	14	1	-	3.7933308610507566	5.304340265532161	AACCACACCATTGTC
chr17	15377714	15377715	chr17:15377715:T:A	rs113035304	T	A	T	Sox1_MA0870.1	23	0	+	0	0	.
chr17	15389846	15389847	chr17:15389847:G:T	rs917518	G	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	15448436	15448437	chr17:15448437:G:A	rs78109166	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr17	15463397	15463398	chr17:15463398:C:T	rs1548678	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr17	15480454	15480455	chr17:15480455:T:G	rs11078306	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr17	15564535	15564536	chr17:15564536:G:A	rs16941076	G	A	g	Sox1_MA0870.1	-15	0	+	0	0	.
chr17	15686419	15686420	chr17:15686420:G:A	rs10221200	G	A	g	Sox1_MA0870.1	3	1	+	3.1969867041805893	10.097576371377814	CACGAATGCATTGTT
chr17	15914936	15914937	chr17:15914937:C:T	rs113466152	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr17	15914976	15914977	chr17:15914977:T:C	rs859255	T	C	C	Sox1_MA0870.1	22	0	+	0	0	.
chr17	15920971	15920972	chr17:15920972:T:C	rs150485006	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr17	15923374	15923375	chr17:15923375:C:T	rs11658454	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr17	16292741	16292742	chr17:16292742:A:G	rs4791665	A	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr17	16341069	16341070	chr17:16341070:T:C	rs714285	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr17	16419049	16419050	chr17:16419050:G:T	rs8079271	G	T	N	Sox1_MA0870.1	-7	0	+	0	0	.
chr17	16453419	16453420	chr17:16453420:C:T	rs78351437	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr17	16521659	16521660	chr17:16521660:C:T	rs73290628	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr17	16653158	16653159	chr17:16653159:A:G	rs7221518	A	G	.	Sox1_MA0870.1	1	1	+	8.873505765421472	4.775215110028331	AATAATACCATTGTC
chr17	16820734	16820735	chr17:16820735:C:T	rs2688020	C	T	.	Sox1_MA0870.1	24	0	+	0	0	.
chr17	16868492	16868493	chr17:16868493:G:A	rs9912757	G	A	g	Sox1_MA0870.1	6	1	-	3.9229778433992584	8.33912813051816	CACATTCGCATTGTT
chr17	16910156	16910157	chr17:16910157:G:T	rs4578698	G	T	T	Sox1_MA0870.1	26	0	+	0	0	.
chr17	16910164	16910165	chr17:16910165:C:G	rs117365429	C	G	C	Sox1_MA0870.1	34	0	+	0	0	.
chr17	16973682	16973683	chr17:16973683:C:G	rs7504093	C	G	C	Sox1_MA0870.1	34	0	-	0	0	.
chr17	16988832	16988833	chr17:16988833:T:G	rs73979022	T	G	T	Sox1_MA0870.1	5	1	-	5.431987990140891	3.5479532448036664	GACAAAAACAGTGCC
chr17	16996807	16996808	chr17:16996808:C:T	rs11868128	C	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr17	17021542	17021543	chr17:17021543:A:G	rs1049449477	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr17	17021549	17021550	chr17:17021550:T:C	rs4985780	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr17	17021576	17021577	chr17:17021577:G:C	rs147172926	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	17061865	17061866	chr17:17061866:A:G	rs7207187	A	G	A	Sox1_MA0870.1	11	1	-	4.980032582045361	0.02463759623502637	AACCAAAGCAGTGTT
chr17	17064936	17064937	chr17:17064937:C:T	rs7223924	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	17109393	17109394	chr17:17109394:A:C	rs7223773	A	C	C	Sox1_MA0870.1	11	1	-	5.147146614460597	-1.7555860723962353	TACACAGGCATTGTG
chr17	17109404	17109405	chr17:17109405:A:G	rs73277644	A	G	A	Sox1_MA0870.1	0	1	-	5.147146614460597	5.849523371608077	TACACAGGCATTGTG
chr17	17242757	17242758	chr17:17242758:G:A	rs544685892	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr17	17309464	17309465	chr17:17309465:G:A	rs9889738	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	17404657	17404658	chr17:17404658:G:A	rs8079827	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr17	17449026	17449027	chr17:17449027:A:C	rs1242482	A	C	c	Sox1_MA0870.1	18	0	-	0	0	.
chr17	17497495	17497496	chr17:17497496:G:A	rs112156600	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr17	17505169	17505170	chr17:17505170:T:C	rs1020696	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr17	17510135	17510136	chr17:17510136:C:T	rs67453318	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr17	18064082	18064083	chr17:18064083:G:A	rs2955371	G	A	G	Sox1_MA0870.1	0	1	+	7.502887693256537	8.845010836063288	GACACTTAGATTGCT
chr17	18105787	18105788	chr17:18105788:G:A	rs854762	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr17	18695254	18695255	chr17:18695255:C:T	rs8070109	C	T	.	Sox1_MA0870.1	7	1	+	4.941820278360199	4.9299912258118255	CCCACTCCCATTGTT
chr17	18855931	18855932	chr17:18855932:G:C	rs148869043	G	C	.	Sox1_MA0870.1	30	0	-	0	0	.
chr17	18855961	18855962	chr17:18855962:C:T	rs66554377	C	T	.	Sox1_MA0870.1	0	1	-	5.203642667373252	6.545765810180006	GGCACTTGCAGTGTC
chr17	18924477	18924478	chr17:18924478:C:G	rs11655553	C	G	-	Sox1_MA0870.1	-14	0	-	0	0	.
chr17	18924479	18924480	chr17:18924480:C:A	rs8080032	C	A	-	Sox1_MA0870.1	-16	0	-	0	0	.
chr17	19326395	19326396	chr17:19326396:G:A	rs72836794	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr17	19342838	19342839	chr17:19342839:G:C	rs8065263	G	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr17	19391068	19391069	chr17:19391069:A:G	rs60998345	A	G	G	Sox1_MA0870.1	11	1	-	8.307332919625898	3.351937933815565	AACAAAACCAGTGTG
chr17	19470999	19471000	chr17:19471000:T:C	rs76576684	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr17	19726490	19726491	chr17:19726491:A:G	rs11655457	A	G	a	Sox1_MA0870.1	-13	0	-	0	0	.
chr17	19755539	19755540	chr17:19755540:A:G	rs11204415	A	G	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr17	19873202	19873203	chr17:19873203:C:T	rs11651717	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr17	19905839	19905840	chr17:19905840:G:T	rs141177511	G	T	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr17	20053634	20053635	chr17:20053635:A:G	rs55853482	A	G	A	Sox1_MA0870.1	5	1	-	5.120520249713182	-1.782644508934578	CTCTATAGCATTGCT
chr17	20071290	20071291	chr17:20071291:A:G	rs17685923	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr17	20203755	20203756	chr17:20203756:G:T	rs2703803	G	T	G	Sox1_MA0870.1	15	0	+	0	0	.
chr17	20203881	20203882	chr17:20203882:T:C	rs2703804	T	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr17	20559934	20559935	chr17:20559935:C:T	rs11650733	C	T	.	Sox1_MA0870.1	-17	0	+	0	0	.
chr17	20967180	20967181	chr17:20967181:G:A	rs3891644	G	A	.	Sox1_MA0870.1	20	0	+	0	0	.
chr17	20977995	20977996	chr17:20977996:A:G	rs11654347	A	G	.	Sox1_MA0870.1	5	1	-	4.320497828497664	-2.582666930150095	CTCAATGTCATTATT
chr17	20991643	20991644	chr17:20991644:T:C	rs4985952	T	C	C	Sox1_MA0870.1	7	1	-	4.638803091768798	4.241824763972291	AGCAAAAACAGTGTG
chr17	21007670	21007671	chr17:21007671:G:T	rs16962375	G	T	G	Sox1_MA0870.1	8	1	-	4.867628823677151	-1.025540830641062	AACAAAATCAGTGGC
chr17	21011321	21011322	chr17:21011322:G:A	rs2291035	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr17	21252501	21252502	chr17:21252502:G:C	rs145625725	G	C	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr17	21539449	21539450	chr17:21539450:A:G	rs1007272160	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr17	21613727	21613728	chr17:21613728:G:A	rs9915376	G	A	.	Sox1_MA0870.1	20	0	-	0	0	.
chr17	21664270	21664271	chr17:21664271:G:C	rs1444404220	G	C	.	Sox1_MA0870.1	33	0	-	0	0	.
chr17	21976475	21976476	chr17:21976476:C:T	rs1247586183	C	T	.	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	22465508	22465509	chr17:22465509:C:G	rs117024651	C	G	.	Sox1_MA0870.1	22	0	-	0	0	.
chr17	22489700	22489701	chr17:22489701:A:G	chr17:22489701:A:G	A	G	.	Sox1_MA0870.1	17	0	-	0	0	.
chr17	22521460	22521461	chr17:22521461:A:C	rs74777036	A	C	.	Sox1_MA0870.1	-17	0	+	0	0	.
chr17	22521472	22521473	chr17:22521473:G:A	rs3931649	G	A	.	Sox1_MA0870.1	-5	0	+	0	0	.
chr17	23016342	23016343	chr17:23016343:A:G	rs1483839686	A	G	.	Sox1_MA0870.1	27	0	-	0	0	.
chr17	23286241	23286242	chr17:23286242:T:A	rs1353743018	T	A	.	Sox1_MA0870.1	1	1	-	3.174962420290992	-0.10232182687014701	CACAACAGGAGTGTT
chr17	23728654	23728655	chr17:23728655:T:G	rs1171211896	T	G	.	Sox1_MA0870.1	31	0	-	0	0	.
chr17	24355069	24355070	chr17:24355070:G:A	rs1390662100	G	A	.	Sox1_MA0870.1	-2	0	-	0	0	.
chr17	25045204	25045205	chr17:25045205:G:C	rs1217340458	G	C	.	Sox1_MA0870.1	26	0	-	0	0	.
chr17	25730753	25730754	chr17:25730754:G:T	rs1181033192	G	T	.	Sox1_MA0870.1	24	0	-	0	0	.
chr17	26653668	26653669	chr17:26653669:T:C	chr17:26653669:T:C	T	C	.	Sox1_MA0870.1	34	0	-	0	0	.
chr17	26701424	26701425	chr17:26701425:C:T	rs1301083915	C	T	.	Sox1_MA0870.1	-20	0	-	0	0	.
chr17	26800067	26800068	chr17:26800068:G:T	chr17:26800068:G:T	G	T	N	Sox1_MA0870.1	4	1	-	5.801923919425819	7.758736854051037	TTCACTTCCATTGAT
chr17	26809255	26809256	chr17:26809256:A:C	rs1409014839	A	C	N	Sox1_MA0870.1	-5	0	-	0	0	.
chr17	26809257	26809258	chr17:26809258:G:T	rs1370129191	G	T	N	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	26861440	26861441	chr17:26861441:T:G	rs1377947766	T	G	N	Sox1_MA0870.1	33	0	-	0	0	.
chr17	26987137	26987138	chr17:26987138:C:T	rs62055412	C	T	C	Sox1_MA0870.1	12	1	-	8.526240448333482	1.617485669018261	AACTCTAACATTGTG
chr17	27155140	27155141	chr17:27155141:C:T	rs2313511	C	T	c	Sox1_MA0870.1	32	0	-	0	0	.
chr17	27244372	27244373	chr17:27244373:C:T	rs56295812	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr17	27352267	27352268	chr17:27352268:A:G	rs34870528	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr17	27373882	27373883	chr17:27373883:A:G	rs1623030	A	G	G	Sox1_MA0870.1	28	0	-	0	0	.
chr17	27473983	27473984	chr17:27473984:G:A	rs12452983	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr17	27651463	27651464	chr17:27651464:T:C	rs4794980	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr17	27771754	27771755	chr17:27771755:G:A	rs7217335	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr17	27845349	27845350	chr17:27845350:G:A	rs72841278	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr17	27862209	27862210	chr17:27862210:C:T	rs998785256	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr17	27940970	27940971	chr17:27940971:G:A	rs8067428	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr17	27965665	27965666	chr17:27965666:C:T	rs75218558	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr17	27980403	27980404	chr17:27980404:T:C	rs12948818	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr17	28265919	28265920	chr17:28265920:T:C	rs241771	T	C	-	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	28752536	28752537	chr17:28752537:C:T	rs34693224	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr17	28879228	28879229	chr17:28879229:T:C	rs1218525742	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	28954125	28954126	chr17:28954126:C:T	rs77256208	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr17	28969402	28969403	chr17:28969403:C:G	rs66811679	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr17	29096096	29096097	chr17:29096097:A:G	rs869717	A	G	A	Sox1_MA0870.1	3	1	+	3.192551487479997	-3.708038179717226	CTCACTCCCAGTGTT
chr17	29216328	29216329	chr17:29216329:C:G	rs72819418	C	G	C	Sox1_MA0870.1	15	0	+	0	0	.
chr17	29439133	29439134	chr17:29439134:G:A	rs4289056	G	A	g	Sox1_MA0870.1	-18	0	-	0	0	.
chr17	29518613	29518614	chr17:29518614:A:G	rs12936194	A	G	A	Sox1_MA0870.1	10	1	-	5.55364019477821	-1.2550568893581227	AAAACTTCCATTGTA
chr17	29577966	29577967	chr17:29577967:A:G	rs614334	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr17	29855666	29855667	chr17:29855667:T:C	rs10445384	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr17	30337982	30337983	chr17:30337983:G:T	rs73275778	G	T	G	Sox1_MA0870.1	2	1	-	6.396380009961197	-0.5123747693540263	CACTCTATCATTGCT
chr17	30341841	30341842	chr17:30341842:C:T	rs6505179	C	T	T	Sox1_MA0870.1	10	1	-	5.313455998103537	0.7458838425307642	GCCAATTTCAGTGGT
chr17	30378024	30378025	chr17:30378025:G:A	rs3764417	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr17	30530775	30530776	chr17:30530776:C:T	rs114112507	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr17	30707995	30707996	chr17:30707996:T:C	rs1376631030	T	C	.	Sox1_MA0870.1	-17	0	-	0	0	.
chr17	30831428	30831429	chr17:30831429:A:G	chr17:30831429:A:G	A	G	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr17	31269362	31269363	chr17:31269363:C:T	rs73988045	C	T	C	Sox1_MA0870.1	2	1	+	7.342585219263199	0.4338304399479772	TACAAGGACATTGTT
chr17	31274398	31274399	chr17:31274399:A:C	rs113359320	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr17	31406630	31406631	chr17:31406631:T:A	rs929286	T	A	T	Sox1_MA0870.1	30	0	+	0	0	.
chr17	31406631	31406632	chr17:31406632:T:C	rs929287	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr17	31593920	31593921	chr17:31593921:A:G	rs17181735	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr17	31630143	31630144	chr17:31630144:T:C	rs62062193	T	C	t	Sox1_MA0870.1	9	1	-	4.862130257806601	-2.0466245215086207	TTCACTATCATTGAA
chr17	32458566	32458567	chr17:32458567:G:T	rs9889607	G	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr17	32519833	32519834	chr17:32519834:A:T	rs73981821	A	T	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr17	32591195	32591196	chr17:32591196:C:T	rs55728128	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr17	32808008	32808009	chr17:32808009:T:C	rs2430986	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr17	32894274	32894275	chr17:32894275:C:T	rs141474713	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr17	32894298	32894299	chr17:32894299:C:T	rs79640811	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr17	32943700	32943701	chr17:32943701:G:A	rs9896361	G	A	A	Sox1_MA0870.1	14	1	-	4.218639095765093	5.729648500246498	GACAATAGCCTTGAC
chr17	32992745	32992746	chr17:32992746:A:G	rs28906	A	G	g	Sox1_MA0870.1	15	0	-	0	0	.
chr17	33162731	33162732	chr17:33162732:C:G	rs9303661	C	G	C	Sox1_MA0870.1	30	0	+	0	0	.
chr17	33272628	33272629	chr17:33272629:G:C	rs12601597	G	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr17	33366932	33366933	chr17:33366933:T:G	rs1007034	T	G	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr17	33366942	33366943	chr17:33366943:T:G	rs1007035	T	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr17	33404754	33404755	chr17:33404755:C:T	rs11655499	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr17	33422167	33422168	chr17:33422168:T:C	rs35578035	T	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	33422194	33422195	chr17:33422195:T:A	rs78569086	T	A	T	Sox1_MA0870.1	18	0	+	0	0	.
chr17	33455010	33455011	chr17:33455011:A:G	rs9303663	A	G	A	Sox1_MA0870.1	4	1	+	6.784006507994578	0.006428253824387942	AACAATAGCAGCGAT
chr17	33460949	33460950	chr17:33460950:C:T	rs7221002	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	33739053	33739054	chr17:33739054:G:C	rs964538	G	C	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr17	33812042	33812043	chr17:33812043:C:T	rs7214667	C	T	C	Sox1_MA0870.1	2	1	+	4.6955177139785995	-2.213237065336621	CACACTTTCATTATC
chr17	33832499	33832500	chr17:33832500:A:C	rs2881782	A	C	C	Sox1_MA0870.1	13	1	-	5.142130472387334	1.4995827457502604	CTCACTGCCAGTGTA
chr17	33921949	33921950	chr17:33921950:T:A	rs17783755	T	A	A	Sox1_MA0870.1	15	0	-	0	0	.
chr17	33954785	33954786	chr17:33954786:C:T	rs12604021	C	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	33973555	33973556	chr17:33973556:C:T	rs902559	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	34169600	34169601	chr17:34169601:C:A	rs3744510	C	A	C	Sox1_MA0870.1	2	1	+	9.444248953928108	2.535494174612888	AACAATTGCATTCTT
chr17	34301316	34301317	chr17:34301317:A:G	rs8073784	A	G	A	Sox1_MA0870.1	10	1	-	7.961143450150761	1.152446366014427	GACAATAACATTCTC
chr17	34378674	34378675	chr17:34378675:T:A	rs16969574	T	A	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr17	34378974	34378975	chr17:34378975:T:G	rs2157960	T	G	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	34424464	34424465	chr17:34424465:T:G	rs62062305	T	G	T	Sox1_MA0870.1	14	1	+	5.390703189752924	3.66502110203482	CCCCATAACAGTGTT
chr17	34550528	34550529	chr17:34550529:A:T	rs11655897	A	T	A	Sox1_MA0870.1	9	1	+	5.955849020261777	-0.9529057590534448	GGCAATAGCAGTGCC
chr17	34721041	34721042	chr17:34721042:T:C	rs4795989	T	C	T	Sox1_MA0870.1	5	1	+	4.775215110028331	-2.1279496486194285	AGCAATACCTTTGTC
chr17	35080620	35080621	chr17:35080621:T:C	rs118074685	T	C	T	Sox1_MA0870.1	4	1	-	7.112820943409197	0.33524268923901	ATCAACACCATTGTT
chr17	35118529	35118530	chr17:35118530:G:A	rs9901455	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr17	35163743	35163744	chr17:35163744:G:A	rs6505444	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr17	35171776	35171777	chr17:35171777:C:G	rs73989554	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	35346408	35346409	chr17:35346409:C:T	rs1000457	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr17	35346430	35346431	chr17:35346431:C:T	rs1243154325	C	T	C	Sox1_MA0870.1	12	1	-	4.219682164089453	-2.689072615225768	GACGCTTCCATTGTA
chr17	35346443	35346444	chr17:35346444:G:A	rs114955714	G	A	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr17	35424053	35424054	chr17:35424054:T:C	rs9892864	T	C	G	Sox1_MA0870.1	10	1	+	3.925316676507446	-2.8833804076288865	AACTAAGACATTGTG
chr17	35548668	35548669	chr17:35548669:T:A	rs78364481	T	A	T	Sox1_MA0870.1	29	0	-	0	0	.
chr17	35571317	35571318	chr17:35571318:A:G	rs75669929	A	G	-	Sox1_MA0870.1	4	1	+	7.304880886829647	0.5273026326594573	GACAATATCATTTTG
chr17	35605867	35605868	chr17:35605868:G:C	rs148030373	G	C	G	Sox1_MA0870.1	10	1	+	4.065591565617624	-0.501980589955148	CTCAATAACAGAGTT
chr17	35895607	35895608	chr17:35895608:G:A	rs61590868	G	A	G	Sox1_MA0870.1	2	1	-	5.5905974390017	-1.3181573403135198	CTCAATAAAATTGTG
chr17	35906866	35906867	chr17:35906867:G:A	rs9912793	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr17	35920504	35920505	chr17:35920505:A:G	rs4796133	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr17	36103148	36103149	chr17:36103149:C:G	rs1719142	C	G	-	Sox1_MA0870.1	-1	0	+	0	0	.
chr17	36150097	36150098	chr17:36150098:G:A	rs916841	G	A	G	Sox1_MA0870.1	7	1	+	3.8673971212590033	4.264375449055512	AACATTAGCATCGTG
chr17	36210484	36210485	chr17:36210485:C:T	rs76113962	C	T	.	Sox1_MA0870.1	12	1	-	4.641277879507499	-2.2674768998077215	GACACTTACCTTGTA
chr17	36655664	36655665	chr17:36655665:T:A	rs7211496	T	A	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	36746563	36746564	chr17:36746564:C:G	rs9906898	C	G	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	37168915	37168916	chr17:37168916:G:C	rs8071315	G	C	C	Sox1_MA0870.1	14	1	+	3.3332805615669674	3.5479532448036664	GACAAGAACAGTGCG
chr17	37444734	37444735	chr17:37444735:G:A	chr17:37444735:G:A	G	A	G	Sox1_MA0870.1	8	1	-	3.942604394741451	-0.23900515189583094	AACAAAATCAATGTC
chr17	37742137	37742138	chr17:37742138:C:T	rs140202989	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	38436558	38436559	chr17:38436559:G:A	rs6503620	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr17	38551068	38551069	chr17:38551069:T:C	rs2471622	T	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr17	38606212	38606213	chr17:38606213:T:C	rs558439231	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr17	38903947	38903948	chr17:38903948:T:C	rs118118194	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr17	38942752	38942753	chr17:38942753:T:C	rs199649284	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr17	39017398	39017399	chr17:39017399:C:T	rs117408174	C	T	C	Sox1_MA0870.1	1	1	-	5.039800896451944	9.138091551845084	CGCACTTACAGTGCT
chr17	39283242	39283243	chr17:39283243:T:C	rs602688	T	C	C	Sox1_MA0870.1	0	1	-	4.141351716798274	2.799228573991521	AGTAATAGCATTGCT
chr17	39815382	39815383	chr17:39815383:A:G	rs112412105	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr17	39919247	39919248	chr17:39919248:T:C	rs143706978	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr17	40168534	40168535	chr17:40168535:A:G	rs41275668	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr17	40180740	40180741	chr17:40180741:G:T	rs79281485	G	T	G	Sox1_MA0870.1	31	0	+	0	0	.
chr17	40220328	40220329	chr17:40220329:T:G	rs55835834	T	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	40438503	40438504	chr17:40438504:T:G	rs11078945	T	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr17	40438553	40438554	chr17:40438554:C:T	rs35103116	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr17	40531177	40531178	chr17:40531178:A:G	rs78901820	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr17	40531201	40531202	chr17:40531202:A:G	rs8064741	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr17	40722574	40722575	chr17:40722575:G:A	rs2429553	G	A	g	Sox1_MA0870.1	28	0	-	0	0	.
chr17	40952693	40952694	chr17:40952694:C:T	rs193078887	C	T	C	Sox1_MA0870.1	14	1	+	7.387235402711886	8.89824480719329	GACTATGCCATTGTC
chr17	41392909	41392910	chr17:41392910:A:G	rs9907506	A	G	G	Sox1_MA0870.1	11	1	-	7.13946029578036	2.1840653099700265	CCCAATGGCATTGGT
chr17	41526901	41526902	chr17:41526902:A:G	rs112500068	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr17	41604960	41604961	chr17:41604961:T:A	rs6503641	T	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr17	41630162	41630163	chr17:41630163:C:T	rs12937570	C	T	T	Sox1_MA0870.1	4	1	+	3.457518400137948	-1.3632469194070236	ATAACTAGCATTGTG
chr17	41681803	41681804	chr17:41681804:T:G	rs73300016	T	G	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	41693831	41693832	chr17:41693832:A:G	rs77748677	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	42003448	42003449	chr17:42003449:G:A	rs8079958	G	A	G	Sox1_MA0870.1	10	1	+	12.56808690045883	8.000514744886058	AACAATTCCAGTGTC
chr17	42248913	42248914	chr17:42248914:T:C	rs114408613	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr17	42248960	42248961	chr17:42248961:G:A	rs763777481	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr17	42361898	42361899	chr17:42361899:G:A	rs72823023	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr17	42536842	42536843	chr17:42536843:G:C	rs185125044	G	C	G	Sox1_MA0870.1	33	0	-	0	0	.
chr17	42585098	42585099	chr17:42585099:G:A	rs4792992	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr17	42585331	42585332	chr17:42585332:C:A	rs987806956	C	A	C	Sox1_MA0870.1	10	1	-	4.182736852288242	6.423861780851804	ACCAATAGCAGCGCT
chr17	42917320	42917321	chr17:42917321:G:A	rs77440667	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	42982316	42982317	chr17:42982317:A:G	rs7207335	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr17	43310022	43310023	chr17:43310023:A:G	rs71379217	A	G	-	Sox1_MA0870.1	-15	0	+	0	0	.
chr17	43342774	43342775	chr17:43342775:G:T	rs11653303	G	T	G	Sox1_MA0870.1	8	1	-	5.353556104043969	-0.5396135502742437	AAAAAAATCATTGTT
chr17	43401086	43401087	chr17:43401087:C:T	rs12946015	C	T	t	Sox1_MA0870.1	20	0	+	0	0	.
chr17	43482233	43482234	chr17:43482234:T:G	chr17:43482234:T:G	T	G	T	Sox1_MA0870.1	1	1	-	3.6929553831034525	-0.0761850017410467	AACCCAGCCATTGTT
chr17	43578669	43578670	chr17:43578670:T:C	rs1316957	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr17	43732478	43732479	chr17:43732479:C:T	rs1534402	C	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr17	43791770	43791771	chr17:43791771:G:C	rs4793032	G	C	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr17	43791789	43791790	chr17:43791790:A:C	chr17:43791790:A:C	A	C	A	Sox1_MA0870.1	3	1	+	8.297450209284264	3.2116852842460903	CACAATAAGAGTGCT
chr17	43932876	43932877	chr17:43932877:T:A	rs1662749	T	A	A	Sox1_MA0870.1	32	0	+	0	0	.
chr17	44872073	44872074	chr17:44872074:C:T	rs71373521	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	44872082	44872083	chr17:44872083:G:A	rs17628255	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr17	45261684	45261685	chr17:45261685:A:G	rs527657003	A	G	A	Sox1_MA0870.1	1	1	+	5.4375458514236445	1.3392551960305037	CACAAGGCCATTGCT
chr17	45263742	45263743	chr17:45263743:C:T	rs11574837	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr17	45277562	45277563	chr17:45277563:G:A	rs7222751	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr17	45715528	45715529	chr17:45715529:T:G	rs1568951	T	G	G	Sox1_MA0870.1	14	1	+	2.3762295878451685	0.6505475001270645	CACAGCACCATTGTT
chr17	45715529	45715530	chr17:45715530:T:C	rs1568950	T	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr17	45837361	45837362	chr17:45837362:G:T	rs62054803	G	T	G	Sox1_MA0870.1	8	1	-	7.3141856833108125	1.421016028992598	CCCACTGGCATTGTC
chr17	45861027	45861028	chr17:45861028:A:G	rs74872829	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr17	45924012	45924013	chr17:45924013:C:T	rs17564493	C	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr17	46072374	46072375	chr17:46072375:G:A	rs12150611	G	A	g	Sox1_MA0870.1	-17	0	-	0	0	.
chr17	46122656	46122657	chr17:46122657:G:A	rs9910683	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr17	46191780	46191781	chr17:46191781:G:A	rs77560892	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr17	46214759	46214760	chr17:46214760:T:C	rs2668695	T	C	c	Sox1_MA0870.1	-10	0	+	0	0	.
chr17	46274764	46274765	chr17:46274765:G:T	rs2668622	G	T	.	Sox1_MA0870.1	12	1	+	9.267565293944555	2.3588105146293343	CACAGTATCATTGTT
chr17	46286968	46286969	chr17:46286969:G:A	rs578102530	G	A	.	Sox1_MA0870.1	34	0	-	0	0	.
chr17	46289144	46289145	chr17:46289145:C:A	rs2957298	C	A	.	Sox1_MA0870.1	30	0	+	0	0	.
chr17	46894285	46894286	chr17:46894286:C:A	rs16941192	C	A	C	Sox1_MA0870.1	16	0	-	0	0	.
chr17	46998816	46998817	chr17:46998817:C:G	rs77212031	C	G	.	Sox1_MA0870.1	30	0	-	0	0	.
chr17	47120789	47120790	chr17:47120790:A:T	rs915695282	A	T	A	Sox1_MA0870.1	18	0	-	0	0	.
chr17	47324629	47324630	chr17:47324630:T:C	rs113833392	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr17	47327777	47327778	chr17:47327778:G:A	rs7221345	G	A	G	Sox1_MA0870.1	7	1	+	4.51150943369184	4.908487761488348	TGCAGTAGCATTGTT
chr17	47863230	47863231	chr17:47863231:C:G	rs147691993	C	G	C	Sox1_MA0870.1	29	0	+	0	0	.
chr17	47909129	47909130	chr17:47909130:A:G	rs78317601	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr17	47936019	47936020	chr17:47936020:G:A	rs192123848	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr17	47959910	47959911	chr17:47959911:A:T	rs2525095	A	T	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr17	48207164	48207165	chr17:48207165:G:T	rs190591861	G	T	G	Sox1_MA0870.1	25	0	-	0	0	.
chr17	48333439	48333440	chr17:48333440:C:T	rs183071364	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr17	48510968	48510969	chr17:48510969:C:T	rs2036764	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr17	48566026	48566027	chr17:48566027:A:G	rs2740760	A	G	A	Sox1_MA0870.1	11	1	-	5.264449919662086	0.3090549338517531	TATAATTGCAGTGTT
chr17	48623778	48623779	chr17:48623779:C:A	rs11651212	C	A	C	Sox1_MA0870.1	26	0	-	0	0	.
chr17	48670140	48670141	chr17:48670141:G:A	rs111683540	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr17	48735078	48735079	chr17:48735079:C:G	rs112743916	C	G	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr17	48911234	48911235	chr17:48911235:C:T	rs46522	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr17	49112452	49112453	chr17:49112453:G:A	rs1004274	G	A	-	Sox1_MA0870.1	25	0	+	0	0	.
chr17	49145919	49145920	chr17:49145920:T:C	rs4794023	T	C	C	Sox1_MA0870.1	3	1	-	4.164927102814269	-2.7356625643829573	AACAATTCCATTAAA
chr17	49530485	49530486	chr17:49530486:A:G	rs2537717	A	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr17	49602992	49602993	chr17:49602993:C:A	rs74749701	C	A	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr17	49968139	49968140	chr17:49968140:C:T	rs72839166	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr17	49968152	49968153	chr17:49968153:G:C	rs72839167	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr17	49991355	49991356	chr17:49991356:T:A	rs8081044	T	A	A	Sox1_MA0870.1	4	1	-	3.251612472509181	-3.5259657816610086	GACAATTGCATGGAC
chr17	50549786	50549787	chr17:50549787:G:C	rs7214956	G	C	G	Sox1_MA0870.1	18	0	-	0	0	.
chr17	50640893	50640894	chr17:50640894:C:A	chr17:50640894:C:A	C	A	C	Sox1_MA0870.1	26	0	-	0	0	.
chr17	50640901	50640902	chr17:50640902:C:T	rs183904195	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr17	50671343	50671344	chr17:50671344:C:T	rs115153115	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr17	50764038	50764039	chr17:50764039:C:T	rs12453046	C	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	50940779	50940780	chr17:50940780:T:C	rs9893647	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr17	51046282	51046283	chr17:51046283:T:C	rs151273164	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr17	51119742	51119743	chr17:51119743:C:T	rs77839552	C	T	C	Sox1_MA0870.1	9	1	-	5.7570896750031295	12.66584445431835	AACAATTTCGTTGGT
chr17	51165202	51165203	chr17:51165203:G:A	rs148903574	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr17	51746062	51746063	chr17:51746063:C:A	rs1263982	C	A	C	Sox1_MA0870.1	0	1	-	3.756038890069978	3.159487927174271	GCCAAAGGCATTGTA
chr17	51901586	51901587	chr17:51901587:G:T	rs73987303	G	T	G	Sox1_MA0870.1	7	1	-	3.708916385807961	4.1386772133440015	ACCACTGCCAGTGCA
chr17	52383709	52383710	chr17:52383710:C:G	rs147543943	C	G	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr17	52383728	52383729	chr17:52383729:G:A	chr17:52383729:G:A	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr17	52648947	52648948	chr17:52648948:C:T	rs7218555	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr17	52789220	52789221	chr17:52789221:T:C	rs16952211	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr17	52882799	52882800	chr17:52882800:T:C	rs56334548	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr17	53033161	53033162	chr17:53033162:T:G	rs12450200	T	G	T	Sox1_MA0870.1	4	1	-	4.506432535369704	2.5496196007444873	AACAACACCAGTGGT
chr17	53850692	53850693	chr17:53850693:T:C	rs9303342	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr17	54372613	54372614	chr17:54372614:A:G	rs7212588	A	G	A	Sox1_MA0870.1	10	1	-	6.7557424730922735	-0.05295461104406096	AACAAAAAGATTGCT
chr17	54603930	54603931	chr17:54603931:G:A	rs9901206	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr17	54972721	54972722	chr17:54972722:A:G	rs72628373	A	G	A	Sox1_MA0870.1	11	1	-	5.763018526226743	0.8076235404164083	AACACTTCTAGTGCT
chr17	55513976	55513977	chr17:55513977:T:C	rs9915073	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	55577403	55577404	chr17:55577404:C:G	rs150732527	C	G	C	Sox1_MA0870.1	19	0	-	0	0	.
chr17	55740729	55740730	chr17:55740730:T:C	rs74454445	T	C	T	Sox1_MA0870.1	10	1	-	3.404667350256921	7.972239505829695	GCCACTATCAATGTT
chr17	55740740	55740741	chr17:55740741:G:T	rs1160027	G	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr17	55740750	55740751	chr17:55740751:T:C	rs188379078	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr17	55870187	55870188	chr17:55870188:G:A	rs117539588	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	55921410	55921411	chr17:55921411:T:G	rs73320219	T	G	T	Sox1_MA0870.1	6	1	-	5.138588935568146	-0.2506100672650563	ATCACTATCCTTGTT
chr17	56212924	56212925	chr17:56212925:G:A	rs982720540	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr17	56515594	56515595	chr17:56515595:G:A	rs74593742	G	A	G	Sox1_MA0870.1	9	1	-	6.489028129575198	6.489028129575198	TACACTACCCTTGTT
chr17	56691020	56691021	chr17:56691021:A:C	rs12452109	A	C	A	Sox1_MA0870.1	21	0	-	0	0	.
chr17	56740793	56740794	chr17:56740794:C:T	rs8068196	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	56754923	56754924	chr17:56754924:T:C	rs117639887	T	C	T	Sox1_MA0870.1	9	1	-	3.911543310582086	-2.9972114687331355	AACAATAACATATTT
chr17	56786570	56786571	chr17:56786571:C:A	rs60066901	C	A	C	Sox1_MA0870.1	10	1	-	10.824130784799962	13.065255713363523	GACAATTTCAGTGTA
chr17	56788824	56788825	chr17:56788825:T:C	rs34934634	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr17	57287221	57287222	chr17:57287222:G:A	rs11654429	G	A	G	Sox1_MA0870.1	2	1	-	5.062052868504597	-1.8467019108106246	CACACTCACATTGCA
chr17	57287242	57287243	chr17:57287243:A:C	rs4794717	A	C	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	57291693	57291694	chr17:57291694:A:G	chr17:57291694:A:G	A	G	A	Sox1_MA0870.1	5	1	-	4.282589265452924	-2.6205754931948353	AACAATTCAAGTGCG
chr17	57326560	57326561	chr17:57326561:A:C	rs868728	A	C	A	Sox1_MA0870.1	31	0	+	0	0	.
chr17	57355688	57355689	chr17:57355689:A:G	rs552786551	A	G	A	Sox1_MA0870.1	5	1	-	5.49233561915503	-1.4108291394927304	CAAAATAGCATTGCC
chr17	57380188	57380189	chr17:57380189:T:C	rs2695349	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr17	57445088	57445089	chr17:57445089:T:G	rs4794738	T	G	T	Sox1_MA0870.1	14	1	-	6.16871612758524	6.558720047888983	GACACTGGCAGTGCA
chr17	57538214	57538215	chr17:57538215:A:C	rs4793867	A	C	A	Sox1_MA0870.1	11	1	-	2.789579663044484	-4.113153023812348	GCCACTGGCAGTGCC
chr17	57562407	57562408	chr17:57562408:A:T	rs117210760	A	T	A	Sox1_MA0870.1	30	0	+	0	0	.
chr17	57570727	57570728	chr17:57570728:G:A	rs72833094	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr17	57772838	57772839	chr17:57772839:A:G	rs203266	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr17	57902699	57902700	chr17:57902700:G:C	rs145203800	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	58079114	58079115	chr17:58079115:C:T	rs115829169	C	T	c	Sox1_MA0870.1	0	1	-	4.526466246716783	5.868589389523536	GACACTCCCATTGCA
chr17	58411806	58411807	chr17:58411807:C:T	rs2021733	C	T	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	58576086	58576087	chr17:58576087:G:C	rs9893027	G	C	G	Sox1_MA0870.1	26	0	-	0	0	.
chr17	58667025	58667026	chr17:58667026:C:T	rs113473833	C	T	c	Sox1_MA0870.1	-3	0	-	0	0	.
chr17	59329657	59329658	chr17:59329658:A:G	rs1451506	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr17	59395794	59395795	chr17:59395795:G:A	rs12952070	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr17	59441433	59441434	chr17:59441434:G:A	rs116933436	G	A	G	Sox1_MA0870.1	7	1	+	4.392706669444886	4.789684997241393	CTTAATAGCATTGTC
chr17	59572816	59572817	chr17:59572817:A:G	rs143388809	A	G	a	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	59777058	59777059	chr17:59777059:G:A	rs6503941	G	A	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr17	59913235	59913236	chr17:59913236:A:T	rs1292033	A	T	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr17	60245367	60245368	chr17:60245368:C:T	rs6503954	C	T	C	Sox1_MA0870.1	13	1	+	3.519113453422662	5.696768750873656	CACAATGTCTTTGCA
chr17	60249686	60249687	chr17:60249687:A:G	rs78812326	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr17	60393041	60393042	chr17:60393042:T:G	rs112135325	T	G	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr17	60393051	60393052	chr17:60393052:G:A	rs192678203	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr17	60396607	60396608	chr17:60396608:T:G	rs56968846	T	G	N	Sox1_MA0870.1	8	1	+	4.899155000865835	5.31026155460278	GACAAGAGTATTGTT
chr17	60858275	60858276	chr17:60858276:C:T	rs116981531	C	T	C	Sox1_MA0870.1	8	1	+	4.741133659660244	0.5595241130229636	TACACTAACATTTCT
chr17	61076656	61076657	chr17:61076657:G:A	rs8077816	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr17	61198593	61198594	chr17:61198594:A:C	rs16944991	A	C	A	Sox1_MA0870.1	24	0	-	0	0	.
chr17	61360976	61360977	chr17:61360977:C:G	rs138879936	C	G	T	Sox1_MA0870.1	31	0	-	0	0	.
chr17	61417212	61417213	chr17:61417213:C:G	chr17:61417213:C:G	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	61417212	61417213	chr17:61417213:C:T	rs882367	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	61504901	61504902	chr17:61504902:A:G	rs77184725	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr17	61519986	61519987	chr17:61519987:T:C	rs9897291	T	C	t	Sox1_MA0870.1	13	1	+	6.966238496938852	4.788583199487858	TACTATTCCATTGTA
chr17	62171590	62171591	chr17:62171591:A:T	rs67578505	A	T	A	Sox1_MA0870.1	33	0	-	0	0	.
chr17	62514933	62514934	chr17:62514934:A:G	rs34974529	A	G	N	Sox1_MA0870.1	20	0	-	0	0	.
chr17	62781855	62781856	chr17:62781856:T:G	rs377687045	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr17	62787400	62787401	chr17:62787401:T:C	rs143504792	T	C	T	Sox1_MA0870.1	10	1	+	4.046088057288904	-2.7626090268474286	ATCCATGCCATTGAT
chr17	62816717	62816718	chr17:62816718:G:C	rs4591205	G	C	G	Sox1_MA0870.1	8	1	-	5.7524377229201225	1.9819347300197854	GACACTGACATCGCT
chr17	63395963	63395964	chr17:63395964:C:A	rs2270133	C	A	A	Sox1_MA0870.1	25	0	+	0	0	.
chr17	63433283	63433284	chr17:63433284:G:A	rs144660778	G	A	G	Sox1_MA0870.1	10	1	+	4.9440409262782055	0.37646877070543294	CACACGATCAGTGTT
chr17	63474188	63474189	chr17:63474189:G:A	rs7213516	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	63498881	63498882	chr17:63498882:G:A	rs56060049	G	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr17	63655366	63655367	chr17:63655367:A:G	rs8077265	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr17	63787426	63787427	chr17:63787427:T:C	rs9747164	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr17	64127268	64127269	chr17:64127269:A:T	rs2291676	A	T	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr17	64148513	64148514	chr17:64148514:T:C	rs117162915	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	64148547	64148548	chr17:64148548:C:T	rs75019192	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr17	64187284	64187285	chr17:64187285:T:C	rs62071562	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr17	64192808	64192809	chr17:64192809:C:T	rs2047153	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr17	64192850	64192851	chr17:64192851:C:T	rs71377728	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr17	64192929	64192930	chr17:64192930:T:G	rs2047152	T	G	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr17	64265202	64265203	chr17:64265203:T:C	rs756277	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr17	64282239	64282240	chr17:64282240:T:C	chr17:64282240:T:C	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr17	64390139	64390140	chr17:64390140:G:T	rs12941127	G	T	G	Sox1_MA0870.1	12	1	+	4.526261310933494	-2.382493468381727	CACAATTACTTTGCA
chr17	64404355	64404356	chr17:64404356:T:C	rs6504227	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr17	64682835	64682836	chr17:64682836:G:A	rs144050049	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr17	64698941	64698942	chr17:64698942:A:T	rs115526831	A	T	T	Sox1_MA0870.1	9	1	-	3.6311829665884443	10.539937745903664	CCCAATAACTTTGCT
chr17	64815245	64815246	chr17:64815246:A:C	rs2074181	A	C	C	Sox1_MA0870.1	9	1	+	5.14399791098696	-1.7647568683282617	AACAATACCATAGAA
chr17	64927597	64927598	chr17:64927598:G:A	rs145044783	G	A	.	Sox1_MA0870.1	0	1	+	6.993684755103921	8.335807897910673	GACAACTACATTGTC
chr17	65085562	65085563	chr17:65085563:C:T	rs75074420	C	T	C	Sox1_MA0870.1	2	1	+	5.724573660058249	-1.1841811192569713	AGCAAATGCATTGTC
chr17	65124327	65124328	chr17:65124328:C:T	rs1968574	C	T	T	Sox1_MA0870.1	10	1	-	4.930603342238283	0.36303118666551126	AACAATAACAGTAGT
chr17	65235697	65235698	chr17:65235698:C:T	rs8071511	C	T	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr17	65250159	65250160	chr17:65250160:T:A	rs17763038	T	A	T	Sox1_MA0870.1	11	1	+	3.8425961795857595	-3.0601365072710727	CACACTCTCATTGAC
chr17	65347598	65347599	chr17:65347599:A:G	rs8067512	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr17	65460103	65460104	chr17:65460104:T:C	rs12450038	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr17	65465056	65465057	chr17:65465057:T:C	rs4563070	T	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr17	65785172	65785173	chr17:65785173:T:G	chr17:65785173:T:G	T	G	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	66021212	66021213	chr17:66021213:A:G	rs973861	A	G	a	Sox1_MA0870.1	21	0	+	0	0	.
chr17	66076512	66076513	chr17:66076513:G:A	rs34163781	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr17	66270067	66270068	chr17:66270068:C:A	rs11658488	C	A	C	Sox1_MA0870.1	25	0	+	0	0	.
chr17	66305244	66305245	chr17:66305245:C:T	rs17633401	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr17	66483225	66483226	chr17:66483226:G:A	rs72838301	G	A	g	Sox1_MA0870.1	8	1	-	6.206527118460004	2.024917571822722	CACACTTTCGTTGTT
chr17	66523143	66523144	chr17:66523144:A:G	rs16959508	A	G	A	Sox1_MA0870.1	11	1	-	4.072564939461554	-0.88283004634878	CAGAATGACAGTGTG
chr17	66586155	66586156	chr17:66586156:C:T	rs188736697	C	T	C	Sox1_MA0870.1	0	1	+	4.492213723845762	3.7898369666982816	CACCATAACCTTGTT
chr17	66603322	66603323	chr17:66603323:T:C	rs9896134	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr17	66633216	66633217	chr17:66633217:A:G	rs145239293	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr17	66717318	66717319	chr17:66717319:A:G	rs9890708	A	G	a	Sox1_MA0870.1	-11	0	-	0	0	.
chr17	66826502	66826503	chr17:66826503:G:T	rs8079150	G	T	t	Sox1_MA0870.1	-6	0	+	0	0	.
chr17	66844647	66844648	chr17:66844648:G:T	rs74411697	G	T	G	Sox1_MA0870.1	13	1	+	3.3838926387439217	7.026440365380994	CACAGTATCAGTGGT
chr17	66938888	66938889	chr17:66938889:G:C	rs7211879	G	C	G	Sox1_MA0870.1	31	0	-	0	0	.
chr17	66938931	66938932	chr17:66938932:G:A	rs111363448	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr17	67039098	67039099	chr17:67039099:T:C	rs4790993	T	C	T	Sox1_MA0870.1	13	1	+	9.056547526759795	6.878892229308802	ATCAATCACATTGTT
chr17	67039118	67039119	chr17:67039119:C:T	rs2885928	C	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr17	67469168	67469169	chr17:67469169:G:A	rs72845145	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr17	67491008	67491009	chr17:67491009:G:C	rs138174086	G	C	G	Sox1_MA0870.1	2	1	-	6.374213476027333	-0.534541303287887	CACAATTCCACTGTA
chr17	67533062	67533063	chr17:67533063:C:T	rs35966843	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr17	67542385	67542386	chr17:67542386:G:C	rs2706691	G	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr17	67549929	67549930	chr17:67549930:C:T	rs35201675	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	67549959	67549960	chr17:67549960:G:A	rs184503617	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr17	67650745	67650746	chr17:67650746:T:G	rs55987730	T	G	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	67967558	67967559	chr17:67967559:C:T	rs12938781	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr17	67979268	67979269	chr17:67979269:C:T	rs4791212	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr17	68066543	68066544	chr17:68066544:T:C	rs62084741	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr17	68129365	68129366	chr17:68129366:A:G	rs62085702	A	G	A	Sox1_MA0870.1	10	1	-	4.161870307776894	-2.6468267763594384	CAGAAAAGCATTGTT
chr17	68130271	68130272	chr17:68130272:A:G	rs71382164	A	G	A	Sox1_MA0870.1	10	1	-	5.346089555335146	-1.462607528801187	AAAAATAGCATTGAG
chr17	68168249	68168250	chr17:68168250:C:A	rs143798484	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr17	68173905	68173906	chr17:68173906:A:C	rs4558468	A	C	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	68201782	68201783	chr17:68201783:T:C	rs4968829	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr17	68238624	68238625	chr17:68238625:G:C	rs565262549	G	C	G	Sox1_MA0870.1	25	0	+	0	0	.
chr17	68464462	68464463	chr17:68464463:G:A	rs2909214	G	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr17	68563955	68563956	chr17:68563956:G:A	rs34212119	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr17	68665227	68665228	chr17:68665228:T:G	rs11658862	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr17	68665231	68665232	chr17:68665232:A:G	rs11657717	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr17	69401234	69401235	chr17:69401235:T:C	rs28839185	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr17	69443311	69443312	chr17:69443312:G:C	rs12453226	G	C	g	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	69511498	69511499	chr17:69511499:T:C	rs60361741	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr17	69540103	69540104	chr17:69540104:T:C	rs73371376	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	69569310	69569311	chr17:69569311:G:A	rs77975410	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr17	69569319	69569320	chr17:69569320:G:C	rs535049904	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr17	69569349	69569350	chr17:69569350:T:C	rs144490476	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr17	69581103	69581104	chr17:69581104:C:T	rs8182335	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr17	69588580	69588581	chr17:69588581:A:G	rs8070514	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr17	69596298	69596299	chr17:69596299:C:T	rs7207924	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr17	69917110	69917111	chr17:69917111:G:A	rs146456539	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr17	70044888	70044889	chr17:70044889:G:A	rs11871263	G	A	G	Sox1_MA0870.1	8	1	+	8.997356308053266	6.874689646635389	CTCAATATGATTGTT
chr17	70074391	70074392	chr17:70074392:C:T	rs11656778	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr17	70074392	70074393	chr17:70074393:A:G	rs1990197	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	70076144	70076145	chr17:70076145:G:C	rs8080091	G	C	G	Sox1_MA0870.1	23	0	+	0	0	.
chr17	70198120	70198121	chr17:70198121:C:T	rs236578	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr17	70252016	70252017	chr17:70252017:A:C	rs236554	A	C	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr17	70274507	70274508	chr17:70274508:G:A	rs9894659	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr17	70279582	70279583	chr17:70279583:C:T	rs8074548	C	T	C	Sox1_MA0870.1	7	1	-	5.498225351510762	5.89520367930727	AACAAAAGCACTGTT
chr17	70292595	70292596	chr17:70292596:T:C	rs312727	T	C	.	Sox1_MA0870.1	9	1	-	4.322035236181968	-2.586719543133252	TCCCATACCATTGCT
chr17	70309950	70309951	chr17:70309951:C:T	rs2573032	C	T	C	Sox1_MA0870.1	0	1	+	4.392837060184883	3.690460303037403	CAGAATTTGATTGTT
chr17	70468776	70468777	chr17:70468777:A:G	rs717119	A	G	a	Sox1_MA0870.1	-17	0	+	0	0	.
chr17	70492566	70492567	chr17:70492567:A:G	rs59310654	A	G	A	Sox1_MA0870.1	3	1	+	4.706759820336479	-2.1938298468607473	AACAACATGATTGTA
chr17	70872106	70872107	chr17:70872107:C:G	rs7226325	C	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr17	71238169	71238170	chr17:71238170:T:C	rs8067695	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr17	71467959	71467960	chr17:71467960:A:T	rs62064834	A	T	A	Sox1_MA0870.1	20	0	-	0	0	.
chr17	71494237	71494238	chr17:71494238:A:G	rs74571009	A	G	A	Sox1_MA0870.1	6	1	+	4.2930468329219265	2.7544401397812086	CACATAAGCATTGTT
chr17	71710102	71710103	chr17:71710103:C:T	rs16976853	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr17	72053679	72053680	chr17:72053680:G:A	rs564767727	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr17	72053688	72053689	chr17:72053689:C:T	rs79649062	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr17	72345221	72345222	chr17:72345222:A:C	rs542425817	A	C	A	Sox1_MA0870.1	8	1	-	5.364461952487573	5.775568506224518	AGCAATAATATTGCA
chr17	72420816	72420817	chr17:72420817:G:A	rs8080655	G	A	A	Sox1_MA0870.1	22	0	+	0	0	.
chr17	72466746	72466747	chr17:72466747:G:A	rs1035077	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr17	72527900	72527901	chr17:72527901:G:A	rs78025287	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr17	72580957	72580958	chr17:72580958:T:G	rs9895215	T	G	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr17	72617015	72617016	chr17:72617016:T:C	rs9889692	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr17	72650674	72650675	chr17:72650675:C:T	rs4793469	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr17	72710155	72710156	chr17:72710156:T:C	rs16977337	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr17	72968917	72968918	chr17:72968918:G:A	rs57807740	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr17	73103815	73103816	chr17:73103816:T:G	rs2172543	T	G	G	Sox1_MA0870.1	7	1	+	4.823836118954451	4.868447671242358	CACAATTTCATGGAT
chr17	73103834	73103835	chr17:73103835:T:C	rs2172542	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr17	73355027	73355028	chr17:73355028:T:C	rs12938296	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr17	73429653	73429654	chr17:73429654:T:C	rs11650519	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr17	73430140	73430141	chr17:73430141:G:T	rs74553202	G	T	G	Sox1_MA0870.1	0	1	+	6.632434311843623	6.035883348947914	GACACTAGCAGTGGC
chr17	73684285	73684286	chr17:73684286:T:C	rs323405	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr17	73709014	73709015	chr17:73709015:C:A	rs4788946	C	A	C	Sox1_MA0870.1	15	0	+	0	0	.
chr17	73751871	73751872	chr17:73751872:T:C	rs2683154	T	C	T	Sox1_MA0870.1	11	1	+	2.9391194518687045	-2.01627553394163	AACAGTAGCAGTGGG
chr17	73791383	73791384	chr17:73791384:T:C	rs142365850	T	C	T	Sox1_MA0870.1	3	1	-	6.578884948148437	-0.32170471904878917	CCCACTACCAGTGTC
chr17	73831006	73831007	chr17:73831007:T:C	rs9898354	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	73991443	73991444	chr17:73991444:G:A	rs11077715	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr17	74042454	74042455	chr17:74042455:G:A	rs73998690	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr17	74087041	74087042	chr17:74087042:C:T	rs6501692	C	T	T	Sox1_MA0870.1	33	0	-	0	0	.
chr17	74120972	74120973	chr17:74120973:A:G	rs72844076	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr17	74121014	74121015	chr17:74121015:A:G	rs8065965	A	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr17	74253089	74253090	chr17:74253090:C:A	rs9899862	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr17	74478294	74478295	chr17:74478295:C:T	rs2891607	C	T	T	Sox1_MA0870.1	4	1	+	3.463313843582593	-1.3574514759623768	CAGACTGTCATTGCT
chr17	74636524	74636525	chr17:74636525:G:A	rs12600673	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr17	74644198	74644199	chr17:74644199:A:G	rs540693	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr17	74685801	74685802	chr17:74685802:C:T	rs12451231	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr17	74938600	74938601	chr17:74938601:A:G	rs2131047	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr17	74987390	74987391	chr17:74987391:C:T	rs569112965	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr17	74988439	74988440	chr17:74988440:G:A	rs866875868	G	A	G	Sox1_MA0870.1	2	1	-	2.995855202679228	-3.912899576635995	AACAATACCAGGGGC
chr17	75154882	75154883	chr17:75154883:T:G	rs73995795	T	G	T	Sox1_MA0870.1	9	1	-	3.8477921629498257	-3.0609626163653956	AACAGTAACAGTGAC
chr17	75340863	75340864	chr17:75340864:T:G	rs55681135	T	G	T	Sox1_MA0870.1	15	0	-	0	0	.
chr17	75460906	75460907	chr17:75460907:T:C	rs6501806	T	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr17	75581455	75581456	chr17:75581456:C:T	rs73364292	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr17	75587850	75587851	chr17:75587851:T:C	rs707711	T	C	C	Sox1_MA0870.1	5	1	+	6.292344331710341	-0.6108204269374179	CTCTATTCCATTGTT
chr17	75593871	75593872	chr17:75593872:C:T	rs820253	C	T	T	Sox1_MA0870.1	2	1	+	4.819576184957148	-2.0891785943580725	GACTATGCCATTGCA
chr17	75833509	75833510	chr17:75833510:C:T	rs28455492	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr17	76049059	76049060	chr17:76049060:A:C	rs189640364	A	C	A	Sox1_MA0870.1	9	1	-	5.858881011628583	5.858881011628583	AACAATAACTTCGTT
chr17	76092269	76092270	chr17:76092270:G:A	rs1868820	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr17	76222398	76222399	chr17:76222399:T:A	rs34435056	T	A	T	Sox1_MA0870.1	7	1	-	3.315128591187187	2.8735387111027726	AACATTCACAGTGTT
chr17	76609189	76609190	chr17:76609190:C:T	rs2532433	C	T	c	Sox1_MA0870.1	34	0	-	0	0	.
chr17	76641655	76641656	chr17:76641656:C:G	rs16969144	C	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr17	76641658	76641659	chr17:76641659:C:T	rs115790662	C	T	C	Sox1_MA0870.1	12	1	-	4.13777180533196	-2.7709829739832608	CACCATTGAATTGTT
chr17	76661989	76661990	chr17:76661990:G:A	rs4788941	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr17	76666873	76666874	chr17:76666874:C:A	rs62085110	C	A	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr17	76894102	76894103	chr17:76894103:G:A	rs4789366	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr17	77089571	77089572	chr17:77089572:A:G	rs16969661	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr17	77148675	77148676	chr17:77148676:G:A	rs77176411	G	A	G	Sox1_MA0870.1	2	1	-	4.468075862605131	-2.440678916710088	AACGATGGCAGTGCT
chr17	77252539	77252540	chr17:77252540:G:A	rs9893702	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr17	77351341	77351342	chr17:77351342:C:T	rs141314377	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr17	77383664	77383665	chr17:77383665:T:G	rs102091	T	G	T	Sox1_MA0870.1	14	1	+	5.159198422869382	3.4335163351512783	CAGAATAACAGTGCT
chr17	77400588	77400589	chr17:77400589:G:A	rs182402197	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr17	77459488	77459489	chr17:77459489:C:T	rs72887162	C	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	77530988	77530989	chr17:77530989:G:T	rs58203824	G	T	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr17	77544075	77544076	chr17:77544076:C:T	rs73997920	C	T	C	Sox1_MA0870.1	7	1	-	5.110402521273201	5.50738084906971	AACAAAAGCAGCGTT
chr17	77667786	77667787	chr17:77667787:T:C	rs66991485	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr17	77784632	77784633	chr17:77784633:T:C	chr17:77784633:T:C	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr17	77827951	77827952	chr17:77827952:A:G	rs11870543	A	G	G	Sox1_MA0870.1	16	0	-	0	0	.
chr17	77863291	77863292	chr17:77863292:G:A	rs74000949	G	A	-	Sox1_MA0870.1	28	0	+	0	0	.
chr17	77863295	77863296	chr17:77863296:C:T	rs377173466	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr17	77919363	77919364	chr17:77919364:A:G	rs1985661	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr17	77944635	77944636	chr17:77944636:G:A	rs12051860	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr17	77944641	77944642	chr17:77944642:C:A	rs12051871	C	A	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr17	77957533	77957534	chr17:77957534:T:C	rs146509492	T	C	T	Sox1_MA0870.1	5	1	+	4.30461422020403	-2.5985505384437295	CAAAATTGCATTGCG
chr17	77963742	77963743	chr17:77963743:A:C	rs4789522	A	C	C	Sox1_MA0870.1	10	1	-	4.506770534576674	2.265645606013113	CAAAATAACATTGAG
chr17	78010944	78010945	chr17:78010945:G:A	rs551919317	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr17	78035143	78035144	chr17:78035144:C:T	rs9907255	C	T	T	Sox1_MA0870.1	17	0	-	0	0	.
chr17	78188054	78188055	chr17:78188055:T:A	rs75448985	T	A	T	Sox1_MA0870.1	4	1	-	5.972780942326022	-0.804797311844167	CCCAAAAACATTGTG
chr17	78395571	78395572	chr17:78395572:C:T	rs4969141	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr17	78718899	78718900	chr17:78718900:T:C	rs11652196	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr17	78718921	78718922	chr17:78718922:T:C	rs28635237	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr17	78817349	78817350	chr17:78817350:C:T	rs1043946085	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr17	78903396	78903397	chr17:78903397:C:T	rs75231587	C	T	C	Sox1_MA0870.1	8	1	+	2.961465774165958	-1.2201437724713244	AACAAGGACAGTGCA
chr17	78969351	78969352	chr17:78969352:T:C	rs118033636	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr17	78975143	78975144	chr17:78975144:A:G	rs35424237	A	G	A	Sox1_MA0870.1	11	1	-	4.638122916887971	-0.3172720689223626	CACAATTACAGTATG
chr17	79079548	79079549	chr17:79079549:C:T	rs3744182	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr17	79187446	79187447	chr17:79187447:G:A	rs74001654	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr17	79187486	79187487	chr17:79187487:A:G	rs2612769	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr17	79202538	79202539	chr17:79202539:A:G	rs35866811	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr17	79202580	79202581	chr17:79202581:C:T	rs35630276	C	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr17	79293999	79294000	chr17:79294000:A:G	rs9894139	A	G	A	Sox1_MA0870.1	5	1	-	6.7087604571939226	-0.19440430145383758	GACTATGTCATTGCT
chr17	79354149	79354150	chr17:79354150:T:C	rs1542396	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr17	79358577	79358578	chr17:79358578:A:G	rs35405259	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr17	79456728	79456729	chr17:79456729:C:T	rs869442	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr17	79648447	79648448	chr17:79648448:G:C	rs926397720	G	C	g	Sox1_MA0870.1	-6	0	+	0	0	.
chr17	79648486	79648487	chr17:79648487:T:C	rs901321548	T	C	c	Sox1_MA0870.1	33	0	+	0	0	.
chr17	79709582	79709583	chr17:79709583:C:T	rs11869267	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr17	79709620	79709621	chr17:79709621:C:T	rs28710124	C	T	-	Sox1_MA0870.1	-12	0	-	0	0	.
chr17	79775777	79775778	chr17:79775778:G:A	rs564314871	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr17	79865595	79865596	chr17:79865596:T:C	rs73414705	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr17	79904816	79904817	chr17:79904817:T:A	rs732573	T	A	A	Sox1_MA0870.1	9	1	-	6.411009989179332	-0.49774479013588835	GACCATGACATTGAT
chr17	79958789	79958790	chr17:79958790:A:G	rs78988223	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr17	80045890	80045891	chr17:80045891:C:T	rs34681986	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr17	80107907	80107908	chr17:80107908:G:A	rs2252455	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr17	80123122	80123123	chr17:80123123:C:G	rs112984162	C	G	c	Sox1_MA0870.1	2	1	+	5.288839464135654	-1.6199153151795667	AACCATGTCATTGGG
chr17	80150408	80150409	chr17:80150409:A:C	rs12948072	A	C	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr17	80209596	80209597	chr17:80209597:A:G	rs1046832	A	G	-	Sox1_MA0870.1	-13	0	-	0	0	.
chr17	80364640	80364641	chr17:80364641:G:A	chr17:80364641:G:A	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr17	80479293	80479294	chr17:80479294:C:T	rs62070202	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr17	80539479	80539480	chr17:80539480:G:A	rs4889855	G	A	A	Sox1_MA0870.1	10	1	+	3.4026596025237126	-1.1649125530490605	AACACATTCAGTGCC
chr17	80544607	80544608	chr17:80544608:G:A	rs4890040	G	A	a	Sox1_MA0870.1	14	1	-	5.9769330060986	7.487942410580004	TTCAAAAACATTGTC
chr17	80693324	80693325	chr17:80693325:A:G	rs12943155	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr17	80747370	80747371	chr17:80747371:G:A	rs7213696	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr17	80818065	80818066	chr17:80818066:C:T	rs9907099	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr17	80873794	80873795	chr17:80873795:A:G	rs34410650	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr17	80899658	80899659	chr17:80899659:C:T	rs9895537	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr17	80899663	80899664	chr17:80899664:A:G	rs4969297	A	G	G	Sox1_MA0870.1	13	1	-	10.353210544073153	8.175555246622158	CACACTGGCAGTGTT
chr17	80899672	80899673	chr17:80899673:G:T	rs4969298	G	T	G	Sox1_MA0870.1	4	1	-	10.353210544073153	12.310023478698369	CACACTGGCAGTGTT
chr17	80901868	80901869	chr17:80901869:G:A	rs2280146	G	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr17	81001358	81001359	chr17:81001359:C:G	rs544601317	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr17	81031092	81031093	chr17:81031093:G:A	rs11548824	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr17	81140271	81140272	chr17:81140272:T:C	rs34156191	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr17	81360018	81360019	chr17:81360019:A:G	rs4969271	A	G	G	Sox1_MA0870.1	1	1	+	3.0928167146694823	-1.0054739407236597	TACAATTGCAGGGCT
chr17	81408209	81408210	chr17:81408210:G:A	rs62072956	G	A	g	Sox1_MA0870.1	14	1	+	6.898474672609997	6.723143435542953	ATCAATTCCAGTGCG
chr17	81486549	81486550	chr17:81486550:G:A	rs138110758	G	A	G	Sox1_MA0870.1	4	1	-	4.896246067199497	0.0754807476545255	AACACGAACAGTGTG
chr17	81511518	81511519	chr17:81511519:G:A	rs11549222	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr17	81556477	81556478	chr17:81556478:G:A	rs139402492	G	A	g	Sox1_MA0870.1	10	1	+	4.844695791599497	0.2771236360267241	AACACAGGCAGTGTG
chr17	81924919	81924920	chr17:81924920:A:C	rs186426854	A	C	A	Sox1_MA0870.1	24	0	+	0	0	.
chr17	82238481	82238482	chr17:82238482:T:G	rs117195347	T	G	T	Sox1_MA0870.1	11	1	+	7.32158059676087	0.4188479099040372	CACAAAGCCATTGCT
chr17	82457979	82457980	chr17:82457980:A:C	chr17:82457980:A:C	A	C	A	Sox1_MA0870.1	25	0	+	0	0	.
chr17	82587854	82587855	chr17:82587855:G:A	chr17:82587855:G:A	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr17	82707700	82707701	chr17:82707701:T:C	rs12603178	T	C	C	Sox1_MA0870.1	11	1	+	8.471672792569354	3.51627780675902	AATAATATCATTGTA
chr17	82709935	82709936	chr17:82709936:A:G	rs9899825	A	G	a	Sox1_MA0870.1	3	1	+	5.5314303298660565	-1.369159337331169	GACACTTGGAGTGTC
chr17	82777436	82777437	chr17:82777437:G:A	rs11867174	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr17	82777473	82777474	chr17:82777474:C:G	rs11869106	C	G	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr17	82825986	82825987	chr17:82825987:T:C	rs77142886	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr17	82889839	82889840	chr17:82889840:A:G	rs75071623	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr17	83183545	83183546	chr17:83183546:T:C	rs374788948	T	C	t	Sox1_MA0870.1	-2	0	-	0	0	.
chr18	332813	332814	chr18:332814:T:C	rs543172612	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr18	459650	459651	chr18:459651:C:T	rs2621168	C	T	C	Sox1_MA0870.1	14	1	-	3.566042279905311	3.3907110428382667	GACACAGGCATTGCG
chr18	597269	597270	chr18:597270:C:T	rs72865420	C	T	C	Sox1_MA0870.1	10	1	+	3.926836158630511	10.735533242766845	AACAAAGCCACTGTT
chr18	597272	597273	chr18:597273:T:G	rs115123927	T	G	T	Sox1_MA0870.1	13	1	+	3.926836158630511	0.28428843199343834	AACAAAGCCACTGTT
chr18	706588	706589	chr18:706589:A:G	rs2612102	A	G	G	Sox1_MA0870.1	29	0	-	0	0	.
chr18	1487730	1487731	chr18:1487731:T:G	rs2345033	T	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr18	1823281	1823282	chr18:1823282:A:G	rs72865571	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr18	2419228	2419229	chr18:2419229:G:T	rs12607550	G	T	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr18	2444655	2444656	chr18:2444656:G:A	rs9946882	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr18	2448748	2448749	chr18:2448749:A:G	rs3848500	A	G	G	Sox1_MA0870.1	0	1	+	3.351901766260628	2.009778623453874	AACAATGACAGAGCC
chr18	2542546	2542547	chr18:2542547:A:C	rs114519313	A	C	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr18	2654848	2654849	chr18:2654849:G:A	rs111495043	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr18	2850882	2850883	chr18:2850883:C:A	rs117088495	C	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr18	2853889	2853890	chr18:2853890:C:T	rs11662299	C	T	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	2889993	2889994	chr18:2889994:T:A	rs116052095	T	A	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr18	2983943	2983944	chr18:2983944:T:C	rs589318	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr18	3011743	3011744	chr18:3011744:G:C	rs58940048	G	C	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr18	3011744	3011745	chr18:3011745:G:C	rs59096963	G	C	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr18	3029460	3029461	chr18:3029461:T:C	rs55768281	T	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	3029487	3029488	chr18:3029488:G:C	rs57492768	G	C	G	Sox1_MA0870.1	14	1	+	6.456080674028206	6.670753357264905	AACAAGAGCAGTGTG
chr18	3029492	3029493	chr18:3029493:C:T	rs73939733	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr18	3029493	3029494	chr18:3029494:G:A	rs1042499227	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr18	3076429	3076430	chr18:3076430:G:C	rs4500827	G	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr18	3252131	3252132	chr18:3252132:T:C	rs16944555	T	C	T	Sox1_MA0870.1	9	1	-	5.36152287480799	-1.547231904507231	CACTATGCCATTGGT
chr18	3401412	3401413	chr18:3401413:G:A	rs10468741	G	A	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr18	3468802	3468803	chr18:3468803:A:G	rs8083002	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr18	3664110	3664111	chr18:3664111:C:G	rs11664794	C	G	C	Sox1_MA0870.1	16	0	+	0	0	.
chr18	3664988	3664989	chr18:3664989:A:T	rs1110731	A	T	T	Sox1_MA0870.1	10	1	-	7.180183294508898	0.37148621037256313	GACAATAGCATAGTA
chr18	3723357	3723358	chr18:3723358:A:G	rs73370547	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr18	3723404	3723405	chr18:3723405:T:C	rs149917635	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr18	3747513	3747514	chr18:3747514:C:G	rs8095503	C	G	c	Sox1_MA0870.1	23	0	-	0	0	.
chr18	3888874	3888875	chr18:3888875:C:T	rs139664034	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr18	3914490	3914491	chr18:3914491:C:T	rs2083670	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr18	3989482	3989483	chr18:3989483:G:A	rs78993733	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr18	4107440	4107441	chr18:4107441:T:C	rs28481672	T	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr18	4403920	4403921	chr18:4403921:T:C	rs2320213	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr18	4933179	4933180	chr18:4933180:A:G	rs35809330	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr18	4947183	4947184	chr18:4947184:A:G	rs8092847	A	G	A	Sox1_MA0870.1	13	1	-	9.411363292661624	7.233707995210629	TTCAATTGCATTGTG
chr18	5029736	5029737	chr18:5029737:G:A	rs8087779	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr18	5029744	5029745	chr18:5029745:A:G	rs8089379	A	G	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr18	5073406	5073407	chr18:5073407:A:C	chr18:5073407:A:C	A	C	G	Sox1_MA0870.1	21	0	-	0	0	.
chr18	5073406	5073407	chr18:5073407:A:G	rs11873420	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr18	5073442	5073443	chr18:5073443:G:T	rs292332	G	T	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr18	5237162	5237163	chr18:5237163:C:G	rs9956056	C	G	C	Sox1_MA0870.1	4	1	+	9.338229581802484	4.517464262257513	ATCACTTACATTGCT
chr18	5238985	5238986	chr18:5238986:A:G	rs148451040	A	G	a	Sox1_MA0870.1	16	0	-	0	0	.
chr18	5464102	5464103	chr18:5464103:T:A	rs11663092	T	A	T	Sox1_MA0870.1	25	0	-	0	0	.
chr18	5507603	5507604	chr18:5507604:A:T	rs60979927	A	T	T	Sox1_MA0870.1	7	1	+	5.859687597545776	5.418097717461361	AACCTTAACATTGTT
chr18	5600721	5600722	chr18:5600722:T:C	rs116847054	T	C	T	Sox1_MA0870.1	13	1	+	5.465442851771229	3.287787554320235	AACAAAACCAATGTT
chr18	5926216	5926217	chr18:5926217:C:T	rs724676	C	T	T	Sox1_MA0870.1	9	1	-	3.67630864303591	10.58506342235113	AACACTGACGTTGGT
chr18	5947874	5947875	chr18:5947875:G:A	rs1893192	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr18	5983703	5983704	chr18:5983704:T:C	rs189949247	T	C	T	Sox1_MA0870.1	5	1	+	8.96449745210921	2.0613326934614524	CACAATGGCAGTGAT
chr18	5983730	5983731	chr18:5983731:A:G	rs572933	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr18	6088744	6088745	chr18:6088745:A:C	rs16949394	A	C	A	Sox1_MA0870.1	31	0	+	0	0	.
chr18	6482978	6482979	chr18:6482979:T:G	rs190965303	T	G	.	Sox1_MA0870.1	11	1	+	4.5557043521482035	-2.3470283347086283	AACATTATGATTGCT
chr18	6668640	6668641	chr18:6668641:T:G	rs1893286	T	G	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr18	6668906	6668907	chr18:6668907:C:T	rs181072965	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	6740785	6740786	chr18:6740786:T:C	rs8084747	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr18	6752265	6752266	chr18:6752266:A:G	rs7240722	A	G	G	Sox1_MA0870.1	14	1	-	5.768918727551503	4.257909323070098	AAGAATTCCATTGGT
chr18	6884488	6884489	chr18:6884489:A:G	rs656747	A	G	G	Sox1_MA0870.1	33	0	+	0	0	.
chr18	7113139	7113140	chr18:7113140:T:G	rs16951262	T	G	T	Sox1_MA0870.1	11	1	+	10.912721191843614	4.009988504986783	GACAATAGCATTGAG
chr18	7766445	7766446	chr18:7766446:A:T	rs147103802	A	T	A	Sox1_MA0870.1	9	1	+	5.317505499995123	-1.5912492793200976	GACTCTTTCATTGCT
chr18	7823286	7823287	chr18:7823287:A:G	rs941719027	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr18	7897361	7897362	chr18:7897362:A:G	rs116567343	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	7922172	7922173	chr18:7922173:A:G	rs7237870	A	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr18	7925754	7925755	chr18:7925755:A:G	rs28755923	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr18	7950961	7950962	chr18:7950962:T:A	rs75032016	T	A	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr18	8028803	8028804	chr18:8028804:G:A	rs145334821	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr18	8080358	8080359	chr18:8080359:A:C	rs502843	A	C	A	Sox1_MA0870.1	9	1	+	5.606557792407241	-1.3021969869079784	AACACATGGATTGTT
chr18	8084619	8084620	chr18:8084620:C:T	rs72909813	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr18	8378746	8378747	chr18:8378747:A:G	rs3786368	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr18	8501765	8501766	chr18:8501766:C:T	rs56732665	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr18	8607758	8607759	chr18:8607759:G:C	rs11662785	G	C	G	Sox1_MA0870.1	4	1	-	4.147129717708118	-0.673635601836852	TCCTCTAGCATTGTT
chr18	8716091	8716092	chr18:8716092:A:C	rs2160913	A	C	A	Sox1_MA0870.1	1	1	+	7.289688998221674	3.5205486133771746	AACATTTTCAGTGTT
chr18	8817779	8817780	chr18:8817780:G:A	rs7240959	G	A	A	Sox1_MA0870.1	25	0	+	0	0	.
chr18	9039370	9039371	chr18:9039371:C:T	rs57008455	C	T	C	Sox1_MA0870.1	14	1	+	4.746392597669701	6.257402002151106	GCCAATGGCAGTGCC
chr18	9403020	9403021	chr18:9403021:C:T	rs8084269	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr18	9562043	9562044	chr18:9562044:C:T	rs2306134	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr18	9637382	9637383	chr18:9637383:G:A	rs16955345	G	A	A	Sox1_MA0870.1	10	1	+	6.085082416484981	1.517510260912207	AACAGTATCAGTGCT
chr18	9743328	9743329	chr18:9743329:A:G	rs17431841	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr18	9782450	9782451	chr18:9782451:C:T	rs8096775	C	T	T	Sox1_MA0870.1	34	0	+	0	0	.
chr18	9804314	9804315	chr18:9804315:G:T	rs2267565	G	T	G	Sox1_MA0870.1	13	1	-	3.909117373726405	2.74124664458824	CAAAATGTCATTGCC
chr18	9870933	9870934	chr18:9870934:C:G	rs73940076	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr18	9974844	9974845	chr18:9974845:G:A	rs139335677	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr18	10222032	10222033	chr18:10222033:C:T	rs58617043	C	T	c	Sox1_MA0870.1	7	1	-	3.5651601656650813	3.9621384934615884	ACCATTTGCAGTGTT
chr18	10330648	10330649	chr18:10330649:G:C	rs206615	G	C	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr18	10366055	10366056	chr18:10366056:C:A	rs373833942	C	A	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	10433881	10433882	chr18:10433882:C:A	rs12956103	C	A	C	Sox1_MA0870.1	34	0	+	0	0	.
chr18	10441472	10441473	chr18:10441473:A:G	rs11665266	A	G	A	Sox1_MA0870.1	10	1	-	5.090240949788527	-1.7184561343478064	ACCACTGACATTGGG
chr18	10477606	10477607	chr18:10477607:T:C	rs666064	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr18	10557966	10557967	chr18:10557967:C:T	rs16974922	C	T	T	Sox1_MA0870.1	0	1	+	3.223204497628013	2.520827740480533	CGCCCTAGCATTGTG
chr18	10705936	10705937	chr18:10705937:A:G	rs11661941	A	G	A	Sox1_MA0870.1	10	1	-	4.031864427650921	-2.7768326564854133	AACATTTGCATTGGA
chr18	10715852	10715853	chr18:10715853:A:G	rs28712767	A	G	G	Sox1_MA0870.1	1	1	+	5.802691794758736	1.7044011393655958	CAAAATACCATTGAT
chr18	10813346	10813347	chr18:10813347:G:T	rs9945781	G	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr18	11044737	11044738	chr18:11044738:C:T	rs2660248	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr18	11075660	11075661	chr18:11075661:A:G	rs9949296	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr18	11154165	11154166	chr18:11154166:G:T	rs8091743	G	T	G	Sox1_MA0870.1	33	0	-	0	0	.
chr18	11176380	11176381	chr18:11176381:C:T	rs9951358	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr18	11321253	11321254	chr18:11321254:T:C	rs557851183	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr18	11321282	11321283	chr18:11321283:G:T	rs370233	G	T	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	11483973	11483974	chr18:11483974:T:G	rs495434	T	G	T	Sox1_MA0870.1	18	0	+	0	0	.
chr18	11483979	11483980	chr18:11483980:A:C	rs572045	A	C	A	Sox1_MA0870.1	24	0	+	0	0	.
chr18	11518330	11518331	chr18:11518331:A:G	rs9953784	A	G	.	Sox1_MA0870.1	-13	0	-	0	0	.
chr18	11690423	11690424	chr18:11690424:C:A	rs9652928	C	A	C	Sox1_MA0870.1	30	0	+	0	0	.
chr18	11695551	11695552	chr18:11695552:A:G	rs17515325	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr18	11839871	11839872	chr18:11839872:A:G	rs4371220	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr18	11945481	11945482	chr18:11945482:T:C	rs649039	T	C	C	Sox1_MA0870.1	7	1	+	7.466681073747823	7.478510126296197	AACAATTTGATTGAG
chr18	11989373	11989374	chr18:11989374:A:G	rs7230346	A	G	G	Sox1_MA0870.1	3	1	+	4.0156037628518115	-2.8849859043454145	CACACCTGCAGTGTT
chr18	11989379	11989380	chr18:11989380:A:C	rs3889500	A	C	A	Sox1_MA0870.1	9	1	+	4.0156037628518115	-2.8931510164634084	CACACCTGCAGTGTT
chr18	12058938	12058939	chr18:12058939:A:C	rs4797617	A	C	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	12098631	12098632	chr18:12098632:A:C	rs8084767	A	C	.	Sox1_MA0870.1	-8	0	+	0	0	.
chr18	12417905	12417906	chr18:12417906:A:G	rs503307	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr18	12549850	12549851	chr18:12549851:T:C	rs723836	T	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr18	12819616	12819617	chr18:12819617:C:T	rs7227207	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr18	12931789	12931790	chr18:12931790:G:A	rs12604538	G	A	G	Sox1_MA0870.1	7	1	+	8.075045300384344	8.472023628180853	TACAATAGCAGTGAG
chr18	13267894	13267895	chr18:13267895:T:G	rs73417395	T	G	T	Sox1_MA0870.1	23	0	+	0	0	.
chr18	13268679	13268680	chr18:13268680:G:A	rs1981402	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr18	13359439	13359440	chr18:13359440:A:G	rs145371099	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr18	13363623	13363624	chr18:13363624:A:G	rs367939430	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr18	13413463	13413464	chr18:13413464:G:A	rs7240292	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr18	13429843	13429844	chr18:13429844:A:G	rs149781107	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr18	13451629	13451630	chr18:13451630:A:G	rs61287701	A	G	G	Sox1_MA0870.1	7	1	-	4.524013585329916	4.5358426378782895	CACATTTTGATTGTT
chr18	13496304	13496305	chr18:13496305:G:A	rs55938405	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr18	13510725	13510726	chr18:13510726:T:C	rs1940914	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr18	13932040	13932041	chr18:13932041:A:G	rs78141786	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr18	15684648	15684649	chr18:15684649:A:G	rs1403755870	A	G	.	Sox1_MA0870.1	15	0	-	0	0	.
chr18	21514016	21514017	chr18:21514017:A:C	rs9950162	A	C	A	Sox1_MA0870.1	11	1	-	5.466667665194299	-1.4360650216625341	GTCTATAGCATTGTG
chr18	21676184	21676185	chr18:21676185:A:G	rs2850565	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr18	21943616	21943617	chr18:21943617:A:T	rs9948997	A	T	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr18	21999145	21999146	chr18:21999146:G:T	rs73395833	G	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr18	22079042	22079043	chr18:22079043:A:G	rs9966969	A	G	G	Sox1_MA0870.1	6	1	-	5.227409912424184	0.8112596253052812	GTCAACTACATTGTT
chr18	22106659	22106660	chr18:22106660:G:A	rs76265129	G	A	G	Sox1_MA0870.1	6	1	+	6.328216182126891	7.866822875267609	ACCACTGTCATTGCC
chr18	22393326	22393327	chr18:22393327:A:G	rs11874111	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr18	22448672	22448673	chr18:22448673:C:A	rs1352745677	C	A	C	Sox1_MA0870.1	27	0	+	0	0	.
chr18	22448676	22448677	chr18:22448677:A:C	rs1227186832	A	C	A	Sox1_MA0870.1	31	0	+	0	0	.
chr18	23154903	23154904	chr18:23154904:C:T	rs45450594	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr18	23203758	23203759	chr18:23203759:A:G	rs11875837	A	G	A	Sox1_MA0870.1	4	1	+	6.656424126762791	-0.12115412740739828	AAAAATGTCATTGCT
chr18	23413646	23413647	chr18:23413647:A:G	rs12960063	A	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr18	23835622	23835623	chr18:23835623:T:A	rs4800515	T	A	T	Sox1_MA0870.1	33	0	+	0	0	.
chr18	23969939	23969940	chr18:23969940:T:C	rs9958904	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr18	24025822	24025823	chr18:24025823:C:G	rs953786	C	G	C	Sox1_MA0870.1	18	0	+	0	0	.
chr18	24325386	24325387	chr18:24325387:A:G	rs71360547	A	G	a	Sox1_MA0870.1	9	1	+	3.4444557647579335	-3.4642990145572874	CACACTGGCAGTTTT
chr18	24588622	24588623	chr18:24588623:G:C	rs1945164	G	C	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr18	24763807	24763808	chr18:24763808:C:T	rs7233467	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr18	24880820	24880821	chr18:24880821:A:G	rs12964517	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr18	25123319	25123320	chr18:25123320:T:C	rs4372769	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr18	25239750	25239751	chr18:25239751:T:C	rs111394817	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr18	25564250	25564251	chr18:25564251:C:T	rs57710909	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr18	25650444	25650445	chr18:25650445:A:C	rs922168616	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr18	25899905	25899906	chr18:25899906:G:A	rs17224271	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr18	26127849	26127850	chr18:26127850:T:C	rs77024946	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr18	26403769	26403770	chr18:26403770:A:T	rs9946189	A	T	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr18	26511465	26511466	chr18:26511466:C:A	rs76610110	C	A	C	Sox1_MA0870.1	7	1	-	4.669364554532453	4.624753002244547	AACACAGGCAGTGTA
chr18	26655749	26655750	chr18:26655750:T:C	rs1051480558	T	C	T	Sox1_MA0870.1	3	1	-	6.0764843100003745	-0.8241053571968513	AACACTTGCACTGTC
chr18	26681956	26681957	chr18:26681957:T:G	rs8083994	T	G	T	Sox1_MA0870.1	9	1	-	4.386848289038502	-2.5219064902767188	GACACTTCCATTATG
chr18	26757611	26757612	chr18:26757612:C:T	rs7230487	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr18	27277853	27277854	chr18:27277854:T:C	rs77794757	T	C	T	Sox1_MA0870.1	3	1	-	4.217087784173802	-2.6835018830234225	TGCACTTGCAGTGTA
chr18	27578303	27578304	chr18:27578304:G:A	rs1030096	G	A	A	Sox1_MA0870.1	13	1	-	5.5870046023658	7.7646598998167935	AAGAATGACATTGCC
chr18	27656470	27656471	chr18:27656471:T:G	rs16943911	T	G	T	Sox1_MA0870.1	1	1	-	4.005578913302584	0.23643852845808533	AACAATAACACTTTT
chr18	27723613	27723614	chr18:27723614:A:G	rs115416020	A	G	A	Sox1_MA0870.1	9	1	+	7.322455151363224	0.41370037204800336	AACAAATTCAGTGTG
chr18	28151535	28151536	chr18:28151536:C:A	rs11564339	C	A	C	Sox1_MA0870.1	18	0	-	0	0	.
chr18	28151555	28151556	chr18:28151556:T:C	rs10513896	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr18	28284783	28284784	chr18:28284784:A:C	rs12608255	A	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr18	28387879	28387880	chr18:28387880:G:T	rs7237578	G	T	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr18	28795276	28795277	chr18:28795277:C:A	chr18:28795277:C:A	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr18	28984575	28984576	chr18:28984576:G:A	rs16945758	G	A	G	Sox1_MA0870.1	8	1	-	5.332797831952433	1.151188285315151	AACAATTCCTTTGCA
chr18	30095701	30095702	chr18:30095702:G:A	rs4455042	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr18	30608963	30608964	chr18:30608964:G:A	rs1478539	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr18	30814060	30814061	chr18:30814061:A:C	rs2000803	A	C	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr18	30879312	30879313	chr18:30879313:G:C	rs1532283	G	C	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr18	30910265	30910266	chr18:30910266:T:A	rs4094418	T	A	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr18	30917997	30917998	chr18:30917998:C:T	rs17725341	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr18	30933604	30933605	chr18:30933605:C:T	rs9748649	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr18	31100277	31100278	chr18:31100278:C:T	rs1550236	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr18	31610838	31610839	chr18:31610839:G:A	rs141873227	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr18	31610973	31610974	chr18:31610974:T:G	rs963316273	T	G	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr18	31706837	31706838	chr18:31706838:T:C	rs1941930	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr18	31741281	31741282	chr18:31741282:T:A	chr18:31741282:T:A	T	A	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr18	31876802	31876803	chr18:31876803:G:C	rs6506944	G	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr18	32214103	32214104	chr18:32214104:G:A	rs335516	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr18	32249943	32249944	chr18:32249944:A:G	rs10502586	A	G	g	Sox1_MA0870.1	-2	0	+	0	0	.
chr18	32308887	32308888	chr18:32308888:T:G	rs79458666	T	G	T	Sox1_MA0870.1	4	1	-	4.600354323784591	2.6435413891593744	GCCCATTTCATTGTC
chr18	32319352	32319353	chr18:32319353:G:C	rs614014	G	C	G	Sox1_MA0870.1	28	0	+	0	0	.
chr18	32372140	32372141	chr18:32372141:A:G	rs1458860	A	G	A	Sox1_MA0870.1	7	1	+	5.593174281954878	5.196195954158371	AACACTGACATTTTG
chr18	32372438	32372439	chr18:32372439:T:G	chr18:32372439:T:G	T	G	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr18	32381956	32381957	chr18:32381957:C:T	rs77435635	C	T	C	Sox1_MA0870.1	8	1	+	5.3388199244108225	1.1572103777735392	AACAATTCCATGGCA
chr18	32450558	32450559	chr18:32450559:T:C	rs10502600	T	C	T	Sox1_MA0870.1	10	1	+	5.0755546418206015	-1.7331424423157324	GACCATTACATTGAA
chr18	32542614	32542615	chr18:32542615:G:A	rs16963529	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr18	32542631	32542632	chr18:32542632:C:T	rs78211929	C	T	C	Sox1_MA0870.1	9	1	+	7.597782075658804	7.597782075658804	CACAATGTCCTTGTT
chr18	32795105	32795106	chr18:32795106:G:A	rs2177406	G	A	G	Sox1_MA0870.1	7	1	+	3.513947488328888	3.910925816125396	CACACTGGCATAGCT
chr18	32921339	32921340	chr18:32921340:G:A	rs117829561	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr18	33135704	33135705	chr18:33135705:A:T	rs271583	A	T	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr18	33761475	33761476	chr18:33761476:A:C	rs116526958	A	C	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr18	34222185	34222186	chr18:34222186:C:T	rs147759424	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr18	34356931	34356932	chr18:34356932:A:G	rs7233775	A	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr18	34463646	34463647	chr18:34463647:T:C	rs1608027	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr18	34767869	34767870	chr18:34767870:A:G	rs73946175	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr18	34773519	34773520	chr18:34773520:A:T	rs575055746	A	T	A	Sox1_MA0870.1	20	0	-	0	0	.
chr18	34913788	34913789	chr18:34913789:C:T	rs8083966	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr18	34938365	34938366	chr18:34938366:C:T	rs80273799	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr18	35107307	35107308	chr18:35107308:G:A	rs9807664	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr18	35276446	35276447	chr18:35276447:A:C	rs9957577	A	C	A	Sox1_MA0870.1	11	1	-	4.129087808037361	-2.773644878819471	CACAAAACCATTTTT
chr18	35436285	35436286	chr18:35436286:C:T	rs80268672	C	T	C	Sox1_MA0870.1	14	1	+	5.02396868203993	6.534978086521335	GACCATTTCATTGAC
chr18	35515196	35515197	chr18:35515197:A:G	rs75277372	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr18	35579520	35579521	chr18:35579521:G:A	rs495050	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr18	35770921	35770922	chr18:35770922:C:T	rs72878530	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr18	35852883	35852884	chr18:35852884:T:C	rs7243571	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr18	35852916	35852917	chr18:35852917:C:T	rs28414221	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr18	35852918	35852919	chr18:35852919:A:G	rs79151494	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr18	36196163	36196164	chr18:36196164:G:A	rs13381368	G	A	G	Sox1_MA0870.1	7	1	-	12.234884815819631	12.223055763271256	GACAATGCCATTGCT
chr18	36196167	36196168	chr18:36196168:T:G	rs13381980	T	G	T	Sox1_MA0870.1	3	1	-	12.234884815819631	7.149119890781456	GACAATGCCATTGCT
chr18	36346670	36346671	chr18:36346671:T:C	rs12326939	T	C	T	Sox1_MA0870.1	10	1	-	6.431889866294233	10.999462021867005	GACAATTTCAATGTG
chr18	36441064	36441065	chr18:36441065:T:G	rs2090036	T	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr18	36613435	36613436	chr18:36613436:T:G	rs74943271	T	G	T	Sox1_MA0870.1	25	0	+	0	0	.
chr18	36694046	36694047	chr18:36694047:C:A	rs10502664	C	A	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr18	36712317	36712318	chr18:36712318:G:A	rs76212203	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr18	36712355	36712356	chr18:36712356:A:G	rs4603639	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr18	36775615	36775616	chr18:36775616:T:G	rs17567496	T	G	T	Sox1_MA0870.1	14	1	+	3.865821474255938	2.140139386537834	GCCATTGCCATTGTT
chr18	37092802	37092803	chr18:37092803:T:G	rs323321	T	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr18	37572599	37572600	chr18:37572600:G:A	rs11665070	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	37574332	37574333	chr18:37574333:G:A	rs747423507	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr18	37935213	37935214	chr18:37935214:A:C	rs80337214	A	C	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr18	37998140	37998141	chr18:37998141:C:G	rs62081861	C	G	C	Sox1_MA0870.1	0	1	-	7.231027926068602	7.336853720320375	GATAATAACAGTGTT
chr18	38006697	38006698	chr18:38006698:G:C	rs62081867	G	C	G	Sox1_MA0870.1	34	0	+	0	0	.
chr18	38253461	38253462	chr18:38253462:C:T	rs1467102	C	T	T	Sox1_MA0870.1	12	1	-	3.8251885496939755	-3.083566229621244	CCCACTGTCATCGTT
chr18	38520042	38520043	chr18:38520043:A:G	rs12326404	A	G	A	Sox1_MA0870.1	6	1	-	5.779892760507545	1.3637424733886427	TACAATTGCATTCTG
chr18	38931447	38931448	chr18:38931448:G:A	rs113200422	G	A	G	Sox1_MA0870.1	7	1	-	4.316747999093161	4.304918946544788	AACTCTGCCAGTGTG
chr18	38931454	38931455	chr18:38931455:T:A	rs62076978	T	A	T	Sox1_MA0870.1	0	1	-	4.316747999093161	2.378073893390702	AACTCTGCCAGTGTG
chr18	39352246	39352247	chr18:39352247:T:A	rs35208442	T	A	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr18	39455786	39455787	chr18:39455787:T:C	rs7230528	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr18	39873018	39873019	chr18:39873019:T:G	rs12606009	T	G	T	Sox1_MA0870.1	9	1	-	9.094183930388274	2.1854291510730537	AACAACAACATTGTG
chr18	40356327	40356328	chr18:40356328:A:C	rs75558681	A	C	A	Sox1_MA0870.1	21	0	+	0	0	.
chr18	40356339	40356340	chr18:40356340:C:T	rs139280006	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr18	40431937	40431938	chr18:40431938:C:T	rs12327278	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr18	40503847	40503848	chr18:40503848:T:C	rs4399603	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr18	40786227	40786228	chr18:40786228:T:C	rs9946819	T	C	T	Sox1_MA0870.1	9	1	-	5.046532089011218	-1.862222690304003	CACACTAGCATTTCT
chr18	41372410	41372411	chr18:41372411:C:T	rs1845925	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	41406934	41406935	chr18:41406935:T:C	rs6507415	T	C	T	Sox1_MA0870.1	10	1	+	9.645787773844063	2.8370906897077304	CACACTGACATTGAT
chr18	41875584	41875585	chr18:41875585:A:G	rs1030619	A	G	G	Sox1_MA0870.1	5	1	-	8.05353771828284	1.1503729596350802	AACCATATCAGTGTA
chr18	42047966	42047967	chr18:42047967:G:A	rs12966303	G	A	G	Sox1_MA0870.1	6	1	+	6.811072071628838	8.349678764769557	AACCCTGCCATTGTA
chr18	42098863	42098864	chr18:42098864:T:G	rs627636	T	G	G	Sox1_MA0870.1	11	1	+	4.222193290672793	-2.6805393961840394	TACAATAGGAGTGGC
chr18	42275575	42275576	chr18:42275576:A:T	rs72901320	A	T	A	Sox1_MA0870.1	1	1	+	6.900853860903423	3.623569613742283	CACAAGATCAGTGTT
chr18	43081819	43081820	chr18:43081820:A:C	rs28550022	A	C	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr18	43279210	43279211	chr18:43279211:A:T	rs72902415	A	T	A	Sox1_MA0870.1	33	0	-	0	0	.
chr18	43527182	43527183	chr18:43527183:T:C	rs16977566	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr18	43579131	43579132	chr18:43579132:G:A	rs115980811	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr18	43587780	43587781	chr18:43587781:C:T	rs188293297	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	43587793	43587794	chr18:43587794:A:C	rs148039010	A	C	A	Sox1_MA0870.1	0	1	+	4.867628823677151	3.63133147512217	AACAAAATCAGTGGC
chr18	43758973	43758974	chr18:43758974:G:C	rs990049	G	C	G	Sox1_MA0870.1	14	1	+	6.207864073773342	6.422536757010041	GACAATGACATTTTG
chr18	43957160	43957161	chr18:43957161:A:G	rs74756344	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	43970816	43970817	chr18:43970817:A:G	rs6507555	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr18	44497939	44497940	chr18:44497940:A:G	rs17778071	A	G	A	Sox1_MA0870.1	13	1	-	8.427773402475642	6.250118105024649	AACCATGCCAGTGTT
chr18	45152961	45152962	chr18:45152962:T:G	rs4890530	T	G	T	Sox1_MA0870.1	28	0	-	0	0	.
chr18	45166493	45166494	chr18:45166494:A:G	rs11877664	A	G	A	Sox1_MA0870.1	14	1	+	6.668419206582245	6.843750443649289	AACACAAACATTGCA
chr18	45267778	45267779	chr18:45267779:A:G	rs117555415	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr18	45600027	45600028	chr18:45600028:G:T	rs8092620	G	T	G	Sox1_MA0870.1	12	1	+	4.448918579316931	-2.459836199998289	AACAATATCAGAGCC
chr18	45660865	45660866	chr18:45660866:G:A	rs17670646	G	A	G	Sox1_MA0870.1	8	1	-	5.96338170367	1.781772157032718	GACACTTACAGTGAA
chr18	45739094	45739095	chr18:45739095:T:C	rs473429	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr18	45746082	45746083	chr18:45746083:G:A	rs1295257711	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr18	45983385	45983386	chr18:45983386:G:A	rs920294	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	46272677	46272678	chr18:46272678:C:T	rs144914551	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr18	46274647	46274648	chr18:46274648:T:C	rs73956287	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr18	46388321	46388322	chr18:46388322:C:T	rs56203809	C	T	c	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	46750878	46750879	chr18:46750879:T:C	rs4624285	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr18	46909761	46909762	chr18:46909762:A:G	rs4890698	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr18	47263971	47263972	chr18:47263972:G:A	rs9948677	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr18	48098836	48098837	chr18:48098837:C:T	rs36012307	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr18	48098860	48098861	chr18:48098861:G:A	rs113517009	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr18	48125612	48125613	chr18:48125613:C:G	rs72920081	C	G	G	Sox1_MA0870.1	20	0	+	0	0	.
chr18	48226477	48226478	chr18:48226478:G:A	rs73433342	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr18	48338568	48338569	chr18:48338569:C:T	rs111917360	C	T	C	Sox1_MA0870.1	14	1	+	5.2595184630796386	6.770527867561043	TTCACTGACAGTGTC
chr18	48344988	48344989	chr18:48344989:T:G	chr18:48344989:T:G	T	G	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr18	48530060	48530061	chr18:48530061:C:A	rs186060343	C	A	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr18	48675281	48675282	chr18:48675282:G:A	rs113947268	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr18	48681120	48681121	chr18:48681121:C:T	rs184505240	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	48930803	48930804	chr18:48930804:T:C	rs4939828	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr18	48960674	48960675	chr18:48960675:T:C	rs139770888	T	C	T	Sox1_MA0870.1	1	1	-	14.793169126414622	10.694878471021479	AACACTTACATTGTT
chr18	48960680	48960681	chr18:48960681:G:A	rs78574740	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	48976726	48976727	chr18:48976727:T:C	rs77057610	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr18	49167449	49167450	chr18:49167450:T:G	rs12970381	T	G	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr18	49238747	49238748	chr18:49238748:T:C	rs1573872	T	C	T	Sox1_MA0870.1	5	1	+	5.248106565996308	-1.6550581926514516	GACCATGCCATTGCA
chr18	49487877	49487878	chr18:49487878:T:C	rs80009443	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr18	49631955	49631956	chr18:49631956:C:A	rs9304382	C	A	c	Sox1_MA0870.1	2	1	+	6.292246606968124	-0.6165081723470959	AGCAATACCATAGTT
chr18	49743115	49743116	chr18:49743116:A:G	rs8082925	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr18	49833877	49833878	chr18:49833878:G:A	rs632263	G	A	A	Sox1_MA0870.1	15	0	+	0	0	.
chr18	49893944	49893945	chr18:49893945:T:A	rs1539925	T	A	T	Sox1_MA0870.1	1	1	-	4.366176729401824	1.0888924822406834	CACCATGAGATTGTG
chr18	49907374	49907375	chr18:49907375:G:C	rs55754534	G	C	G	Sox1_MA0870.1	18	0	+	0	0	.
chr18	50128171	50128172	chr18:50128172:T:C	rs78000200	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	50286730	50286731	chr18:50286731:C:T	rs148452357	C	T	c	Sox1_MA0870.1	33	0	+	0	0	.
chr18	50398379	50398380	chr18:50398380:A:G	rs56109646	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr18	50411223	50411224	chr18:50411224:A:C	rs2919793	A	C	A	Sox1_MA0870.1	33	0	-	0	0	.
chr18	50422631	50422632	chr18:50422632:A:C	rs9963208	A	C	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr18	50704525	50704526	chr18:50704526:C:T	rs7227230	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr18	50834224	50834225	chr18:50834225:G:T	rs6508038	G	T	-	Sox1_MA0870.1	25	0	-	0	0	.
chr18	50869283	50869284	chr18:50869284:A:T	rs630689	A	T	T	Sox1_MA0870.1	15	0	-	0	0	.
chr18	51031241	51031242	chr18:51031242:A:G	rs78950659	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr18	51051221	51051222	chr18:51051222:T:C	rs76642607	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr18	51051246	51051247	chr18:51051247:G:C	rs544824712	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr18	51106558	51106559	chr18:51106559:T:C	rs139023400	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr18	51445887	51445888	chr18:51445888:G:A	rs321861	G	A	A	Sox1_MA0870.1	2	1	-	4.284465209047371	-2.624289570267847	AACACCAGTATTGTT
chr18	51731239	51731240	chr18:51731240:G:A	rs16953869	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr18	51753912	51753913	chr18:51753913:G:A	rs52677	G	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr18	51753920	51753921	chr18:51753921:C:T	rs52678	C	T	T	Sox1_MA0870.1	34	0	+	0	0	.
chr18	52081451	52081452	chr18:52081452:C:T	rs12456920	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr18	52701003	52701004	chr18:52701004:G:A	rs17682262	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr18	52902307	52902308	chr18:52902308:G:A	rs143855621	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr18	53127770	53127771	chr18:53127771:G:A	rs72921410	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr18	53196953	53196954	chr18:53196954:A:G	rs61480191	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr18	53196957	53196958	chr18:53196958:T:G	rs12958119	T	G	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr18	53380498	53380499	chr18:53380499:C:T	rs72929453	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr18	53380502	53380503	chr18:53380503:A:G	rs62098050	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr18	53847667	53847668	chr18:53847668:C:A	rs7237478	C	A	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr18	54118669	54118670	chr18:54118670:T:G	rs922074	T	G	T	Sox1_MA0870.1	22	0	+	0	0	.
chr18	54737177	54737178	chr18:54737178:A:G	rs28434600	A	G	A	Sox1_MA0870.1	6	1	+	5.292943284774715	3.7543365916339972	AACCATATCATAGTT
chr18	54945778	54945779	chr18:54945779:T:C	rs11872768	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr18	55272789	55272790	chr18:55272790:T:C	rs149891170	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr18	55272823	55272824	chr18:55272824:A:C	rs113860260	A	C	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr18	55908982	55908983	chr18:55908983:C:T	rs533731210	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr18	56033562	56033563	chr18:56033563:A:G	rs2588490	A	G	A	Sox1_MA0870.1	1	1	+	4.161870307776894	0.06357965238375518	CACAAAAGCATTTTT
chr18	56233834	56233835	chr18:56233835:A:C	rs1019893810	A	C	A	Sox1_MA0870.1	15	0	+	0	0	.
chr18	56371780	56371781	chr18:56371781:T:C	rs17611373	T	C	T	Sox1_MA0870.1	0	1	+	5.674438094194638	6.376814851342118	TGCAATAAGAGTGTT
chr18	56652282	56652283	chr18:56652283:T:C	rs596755	T	C	T	Sox1_MA0870.1	4	1	-	6.394075190297247	-0.38350306387294075	AACAATATCAATGCA
chr18	56908196	56908197	chr18:56908197:C:T	rs4801059	C	T	c	Sox1_MA0870.1	8	1	+	8.239642372191414	4.0580328255541325	AAAAATAGCATTGCT
chr18	56915613	56915614	chr18:56915614:T:C	rs9653061	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr18	56919432	56919433	chr18:56919433:T:C	rs7245128	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr18	56953953	56953954	chr18:56953954:A:G	rs28370436	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr18	57146948	57146949	chr18:57146949:T:G	rs7506538	T	G	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr18	57432174	57432175	chr18:57432175:C:T	rs79138467	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr18	57434683	57434684	chr18:57434684:G:A	rs3760615	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr18	57533252	57533253	chr18:57533253:G:C	rs656431	G	C	C	Sox1_MA0870.1	6	1	+	3.4020996016187275	-0.44849270807375696	GACACTGGCTTTGCT
chr18	57658596	57658597	chr18:57658597:C:T	rs317827	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr18	57668007	57668008	chr18:57668008:A:G	rs4940499	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr18	57715852	57715853	chr18:57715853:G:A	rs77865564	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr18	57942729	57942730	chr18:57942730:A:G	rs80298740	A	G	A	Sox1_MA0870.1	4	1	-	5.432523271392093	10.253288590937064	AGCATTTTCATTGTT
chr18	58293317	58293318	chr18:58293318:C:T	rs9956458	C	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr18	58293344	58293345	chr18:58293345:G:T	rs9955824	G	T	T	Sox1_MA0870.1	16	0	+	0	0	.
chr18	58491999	58492000	chr18:58492000:C:T	rs79668328	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr18	58572797	58572798	chr18:58572798:C:T	rs11152086	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr18	58581696	58581697	chr18:58581697:T:G	rs12457935	T	G	T	Sox1_MA0870.1	23	0	-	0	0	.
chr18	58639012	58639013	chr18:58639013:A:C	rs74827833	A	C	A	Sox1_MA0870.1	16	0	+	0	0	.
chr18	58892718	58892719	chr18:58892719:G:C	rs12454263	G	C	G	Sox1_MA0870.1	4	1	-	4.746723680327706	-0.07404163921726437	TACACGAACATTGCT
chr18	58930286	58930287	chr18:58930287:T:C	rs11664500	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr18	59051994	59051995	chr18:59051995:C:G	rs17761871	C	G	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	59052009	59052010	chr18:59052010:C:T	rs970860451	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr18	59216045	59216046	chr18:59216046:G:C	rs11152135	G	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr18	59276251	59276252	chr18:59276252:C:T	rs77759734	C	T	C	Sox1_MA0870.1	2	1	+	4.170602217361912	-2.738152561953307	GTCAGTACCATTGTG
chr18	59351689	59351690	chr18:59351690:G:A	rs12963340	G	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr18	59402532	59402533	chr18:59402533:G:T	rs911061995	G	T	G	Sox1_MA0870.1	6	1	+	10.278071881194414	10.843629858620831	GACACTGCCATTGCT
chr18	59502282	59502283	chr18:59502283:C:A	rs35898599	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr18	59537888	59537889	chr18:59537889:T:C	rs4940469	T	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr18	59549787	59549788	chr18:59549788:A:G	rs763466400	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr18	59663401	59663402	chr18:59663402:C:T	rs28663389	C	T	C	Sox1_MA0870.1	7	1	-	5.510926332573957	5.907904660370464	AACACTGGCACTGTC
chr18	59752738	59752739	chr18:59752739:A:G	rs114773846	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr18	59952044	59952045	chr18:59952045:C:A	rs67538665	C	A	C	Sox1_MA0870.1	2	1	+	6.66415970115219	-0.24459507816303105	CACAATTCCATTCTC
chr18	60120326	60120327	chr18:60120327:T:C	rs1893512	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr18	60277871	60277872	chr18:60277872:G:A	rs2168709	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr18	60407353	60407354	chr18:60407354:T:C	rs11661470	T	C	T	Sox1_MA0870.1	9	1	-	7.098014006847205	0.18925922753198332	AAAAATGACATTGCT
chr18	60448620	60448621	chr18:60448621:C:T	rs117703170	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr18	60466879	60466880	chr18:60466880:A:G	rs10871778	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr18	60866621	60866622	chr18:60866622:C:T	rs12959958	C	T	T	Sox1_MA0870.1	13	1	+	4.610857962471401	6.788513259922395	ATCAAAAGCAGTGCT
chr18	61118248	61118249	chr18:61118249:A:T	rs62098439	A	T	A	Sox1_MA0870.1	27	0	+	0	0	.
chr18	61127608	61127609	chr18:61127609:T:C	rs242719	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr18	61496462	61496463	chr18:61496463:T:C	rs62098152	T	C	T	Sox1_MA0870.1	10	1	+	4.391179193061156	-2.417517891075178	CACAGTTTCATTGCG
chr18	61574524	61574525	chr18:61574525:T:C	rs73963362	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr18	62017936	62017937	chr18:62017937:C:T	rs56369218	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr18	62105351	62105352	chr18:62105352:C:T	rs17636157	C	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr18	62332446	62332447	chr18:62332447:A:G	rs4547437	A	G	G	Sox1_MA0870.1	3	1	+	6.134182207027434	-0.76640746016979	ATCAATTCCATTTTT
chr18	62378970	62378971	chr18:62378971:C:T	rs12954567	C	T	C	Sox1_MA0870.1	8	1	+	11.60260070846928	7.4209911618319975	CACAATGACATTGAT
chr18	62442483	62442484	chr18:62442484:C:T	rs3744931	C	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr18	62458878	62458879	chr18:62458879:T:C	rs694419	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr18	62486552	62486553	chr18:62486553:A:G	rs150739575	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr18	62915304	62915305	chr18:62915305:C:T	rs484380	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr18	63094088	63094089	chr18:63094089:A:G	rs73467752	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr18	63253620	63253621	chr18:63253621:C:T	rs17758695	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr18	63254175	63254176	chr18:63254176:G:C	rs74843171	G	C	G	Sox1_MA0870.1	33	0	-	0	0	.
chr18	63389556	63389557	chr18:63389557:T:C	rs189803662	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr18	63580079	63580080	chr18:63580080:T:C	rs9948949	T	C	C	Sox1_MA0870.1	13	1	+	4.8149720172606285	2.637316719809634	AGCAATAACATTATA
chr18	63617844	63617845	chr18:63617845:T:C	rs75030349	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr18	63709059	63709060	chr18:63709060:C:T	rs190549361	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr18	63712264	63712265	chr18:63712265:T:C	rs4940594	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr18	63763994	63763995	chr18:63763995:T:C	rs1506413	T	C	T	Sox1_MA0870.1	9	1	-	8.33170675611844	1.4229519768032173	TACAATTGTATTGTA
chr18	63891169	63891170	chr18:63891170:A:G	rs62099125	A	G	A	Sox1_MA0870.1	10	1	-	6.568834490512149	-0.23986259362418394	CACATTTTCATTGTG
chr18	64258405	64258406	chr18:64258406:C:T	rs11876027	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr18	64333104	64333105	chr18:64333105:T:C	rs9964824	T	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr18	64365277	64365278	chr18:64365278:T:C	rs2059004	T	C	C	Sox1_MA0870.1	3	1	-	3.890513490951825	-3.0100761762454016	AACAATGCCATCATT
chr18	64438196	64438197	chr18:64438197:A:C	rs2959473	A	C	A	Sox1_MA0870.1	7	1	-	5.817200074475769	5.861811626763675	AACACTTTCAATGTG
chr18	64474815	64474816	chr18:64474816:A:T	rs12966295	A	T	A	Sox1_MA0870.1	14	1	-	4.86801559945143	2.967002274666282	CACAACTGCATTGAT
chr18	64786049	64786050	chr18:64786050:G:A	rs778778	G	A	A	Sox1_MA0870.1	0	1	-	7.804714639372894	7.102337882225412	CGCAATATCAGTGTA
chr18	65053869	65053870	chr18:65053870:C:T	rs1642569	C	T	C	Sox1_MA0870.1	2	1	+	3.573068157146597	-3.335686622168622	AACCATACCCTTGTG
chr18	65106198	65106199	chr18:65106199:C:T	rs176148	C	T	T	Sox1_MA0870.1	25	0	+	0	0	.
chr18	65227578	65227579	chr18:65227579:A:G	rs505754	A	G	g	Sox1_MA0870.1	4	1	+	4.151973834602545	-2.6256044195676433	CGCCATTACATTGCT
chr18	65236428	65236429	chr18:65236429:C:T	rs537034038	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr18	65236429	65236430	chr18:65236430:G:A	rs114279135	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr18	65280078	65280079	chr18:65280079:A:G	rs682165	A	G	A	Sox1_MA0870.1	9	1	+	4.337916901713498	-2.5708378776017224	CTCAAGGCCATTGTT
chr18	65280094	65280095	chr18:65280095:A:G	rs577092165	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr18	65458453	65458454	chr18:65458454:A:T	rs2850702	A	T	A	Sox1_MA0870.1	27	0	+	0	0	.
chr18	65631898	65631899	chr18:65631899:A:G	rs116685555	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr18	65788354	65788355	chr18:65788355:G:A	rs12457175	G	A	G	Sox1_MA0870.1	2	1	-	5.207445919725368	-1.7013088595898536	AACTATTTCAGTGAT
chr18	66076688	66076689	chr18:66076689:A:C	rs13381483	A	C	A	Sox1_MA0870.1	4	1	+	5.718266456818993	3.7614535221937757	CCCAAAGTCATTGTT
chr18	66233513	66233514	chr18:66233514:T:A	rs74745049	T	A	T	Sox1_MA0870.1	9	1	-	5.343618857298273	-1.5651359220169474	AACCCTTGCAGTGTG
chr18	66604142	66604143	chr18:66604143:C:G	rs768007226	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr18	66773032	66773033	chr18:66773033:C:A	rs571597608	C	A	C	Sox1_MA0870.1	23	0	-	0	0	.
chr18	67429047	67429048	chr18:67429048:T:C	rs62093169	T	C	T	Sox1_MA0870.1	10	1	+	6.4008293148484245	-0.407867769287909	ACCACTTTTATTGTT
chr18	67731938	67731939	chr18:67731939:A:G	rs55754359	A	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr18	67735628	67735629	chr18:67735629:T:G	rs17077899	T	G	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr18	67784020	67784021	chr18:67784021:G:T	rs8085826	G	T	T	Sox1_MA0870.1	31	0	-	0	0	.
chr18	67788646	67788647	chr18:67788647:T:A	rs10401084	T	A	A	Sox1_MA0870.1	4	1	-	5.808281815426199	-0.9692964387439905	CACAACACCATTGAT
chr18	67788669	67788670	chr18:67788670:A:T	rs115211153	A	T	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr18	67919506	67919507	chr18:67919507:G:A	rs35331608	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr18	67919514	67919515	chr18:67919515:A:G	rs80200300	A	G	A	Sox1_MA0870.1	13	1	-	3.2476101411306426	1.0699548436796484	ACCACTACCACTGTC
chr18	68149107	68149108	chr18:68149108:C:A	rs1589134	C	A	c	Sox1_MA0870.1	3	1	+	6.0206994568308465	11.10646438186902	AACCATTGCATTGAA
chr18	68206504	68206505	chr18:68206505:A:G	rs614711	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr18	68377067	68377068	chr18:68377068:T:C	rs17079006	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr18	68457151	68457152	chr18:68457152:T:A	rs7235203	T	A	T	Sox1_MA0870.1	9	1	-	6.324063608233514	-0.5846911710817061	TACATTATCAGTGTT
chr18	68489665	68489666	chr18:68489666:A:G	rs9955947	A	G	G	Sox1_MA0870.1	15	0	+	0	0	.
chr18	68623624	68623625	chr18:68623625:A:G	rs675604	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr18	69159273	69159274	chr18:69159274:C:T	rs11151487	C	T	T	Sox1_MA0870.1	8	1	+	7.745204978798705	3.563595432161424	CACCATTTCAGTGTT
chr18	69485064	69485065	chr18:69485065:T:C	rs4493160	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr18	70249740	70249741	chr18:70249741:G:A	rs4891833	G	A	a	Sox1_MA0870.1	12	1	+	4.68385920298962	-2.2248955763256006	GTTAATAACATTGTC
chr18	70472868	70472869	chr18:70472869:G:A	rs9965095	G	A	a	Sox1_MA0870.1	7	1	+	7.118361592210439	7.515339920006946	GAAACTAGCATTGTT
chr18	70672813	70672814	chr18:70672814:C:T	rs556807958	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr18	70908570	70908571	chr18:70908571:A:C	rs56257541	A	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr18	71045481	71045482	chr18:71045482:A:G	rs12970821	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr18	71168394	71168395	chr18:71168395:A:G	rs8089327	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr18	71524247	71524248	chr18:71524248:A:G	rs959721399	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr18	72181502	72181503	chr18:72181503:C:T	rs559217032	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr18	72351787	72351788	chr18:72351788:G:T	rs12961877	G	T	G	Sox1_MA0870.1	34	0	-	0	0	.
chr18	72934463	72934464	chr18:72934464:C:G	rs12969722	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr18	73215104	73215105	chr18:73215105:A:G	rs8086486	A	G	G	Sox1_MA0870.1	9	1	+	5.82682501000526	-1.0819297693099608	GGCCATTGCATTGTT
chr18	73283876	73283877	chr18:73283877:A:C	rs79675858	A	C	A	Sox1_MA0870.1	17	0	-	0	0	.
chr18	73283878	73283879	chr18:73283879:T:C	rs4619489	T	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr18	73414703	73414704	chr18:73414704:C:G	rs4411589	C	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr18	73693181	73693182	chr18:73693182:G:T	rs11151893	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr18	73693193	73693194	chr18:73693194:T:C	rs10871728	T	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr18	74299629	74299630	chr18:74299630:A:C	rs1790810	A	C	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr18	74311186	74311187	chr18:74311187:A:G	rs9950788	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr18	74384827	74384828	chr18:74384828:G:A	rs17089168	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr18	74489439	74489440	chr18:74489440:G:C	rs73474664	G	C	G	Sox1_MA0870.1	32	0	+	0	0	.
chr18	74511174	74511175	chr18:74511175:C:T	rs8088885	C	T	.	Sox1_MA0870.1	-16	0	+	0	0	.
chr18	74631224	74631225	chr18:74631225:A:G	rs3794942	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr18	75055312	75055313	chr18:75055313:G:T	rs17056226	G	T	G	Sox1_MA0870.1	27	0	+	0	0	.
chr18	75128636	75128637	chr18:75128637:A:G	rs17264285	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr18	75202962	75202963	chr18:75202963:T:G	rs201721596	T	G	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr18	75679347	75679348	chr18:75679348:C:T	rs2584469	C	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr18	75679544	75679545	chr18:75679545:C:G	rs761043439	C	G	C	Sox1_MA0870.1	4	1	+	3.9954599027888156	-0.8253054167561565	CACCCTTGCATTGCA
chr18	75687766	75687767	chr18:75687767:T:C	rs2849807	T	C	C	Sox1_MA0870.1	14	1	+	5.2732516422516245	3.7622422377702196	GCCAATACCATTTTT
chr18	75774750	75774751	chr18:75774751:T:C	rs7228749	T	C	C	Sox1_MA0870.1	7	1	+	7.825459781445588	7.837288833993961	CACAATGTCATCGTG
chr18	75775277	75775278	chr18:75775278:A:C	rs1539982	A	C	C	Sox1_MA0870.1	17	0	-	0	0	.
chr18	75784590	75784591	chr18:75784591:C:T	rs17058124	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr18	75800470	75800471	chr18:75800471:G:A	rs143838721	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr18	76258351	76258352	chr18:76258352:T:C	rs12969731	T	C	T	Sox1_MA0870.1	13	1	+	8.012163662373503	5.83450836492251	AGCACTTTCAGTGTT
chr18	76407610	76407611	chr18:76407611:A:C	rs17059325	A	C	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr18	76559528	76559529	chr18:76559529:C:T	rs17059541	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr18	76668685	76668686	chr18:76668686:A:G	rs4891184	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr18	76688591	76688592	chr18:76688592:G:A	rs11663673	G	A	G	Sox1_MA0870.1	8	1	-	3.097844941329478	-1.0837646053078047	AACACCAGCATTGGG
chr18	76757287	76757288	chr18:76757288:A:G	rs9807771	A	G	G	Sox1_MA0870.1	3	1	+	4.0366977432687285	-2.8638919239284957	AACAGTAACATTATT
chr18	76770568	76770569	chr18:76770569:A:G	rs12958333	A	G	A	Sox1_MA0870.1	7	1	+	3.404385683822449	3.007407356025942	GACTCTGACAGTGTG
chr18	76779175	76779176	chr18:76779176:G:A	rs7226599	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr18	76810012	76810013	chr18:76810013:C:A	rs7232771	C	A	A	Sox1_MA0870.1	11	1	-	3.0910272003992394	9.99375988725607	GACAATGCCAGGGCT
chr18	76992023	76992024	chr18:76992024:G:A	rs470443	G	A	A	Sox1_MA0870.1	8	1	-	4.41529919819923	0.23368965156194754	AACAATGTCGGTGCT
chr18	77061896	77061897	chr18:77061897:T:C	rs12458282	T	C	C	Sox1_MA0870.1	1	1	-	5.9912747763016885	1.8929841209085476	CACAACTTCATTGCT
chr18	77069129	77069130	chr18:77069130:A:C	rs58502912	A	C	c	Sox1_MA0870.1	9	1	+	4.890076387610419	-2.018678391704802	AACAAGAACAGTGCC
chr18	77162278	77162279	chr18:77162279:C:G	rs12604991	C	G	C	Sox1_MA0870.1	8	1	+	5.353556104043969	1.5830531111436321	AACAAAATCATTTTT
chr18	77210324	77210325	chr18:77210325:T:C	rs2717106	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr18	77271873	77271874	chr18:77271874:T:C	rs75152619	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr18	77324137	77324138	chr18:77324138:C:T	rs75220814	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr18	77344949	77344950	chr18:77344950:T:C	rs948721	T	C	T	Sox1_MA0870.1	5	1	+	5.205156594015007	-1.698008164632753	TACAATAAGACTGTT
chr18	77529074	77529075	chr18:77529075:G:T	rs141929088	G	T	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr18	77650851	77650852	chr18:77650852:T:C	rs1105275	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr18	77650863	77650864	chr18:77650864:T:C	rs909030	T	C	C	Sox1_MA0870.1	9	1	-	4.1425606659082295	-2.766194113406991	CACACAAACATTGGG
chr18	77709105	77709106	chr18:77709106:C:T	rs1393717	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr18	77970971	77970972	chr18:77970972:A:G	rs7504612	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr18	78242725	78242726	chr18:78242726:A:G	rs117208583	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr18	78296277	78296278	chr18:78296278:T:C	rs9961415	T	C	T	Sox1_MA0870.1	9	1	-	3.6702753486179005	-3.238479430697321	CACACTGGGATTGGC
chr18	78530726	78530727	chr18:78530727:C:T	rs11660489	C	T	c	Sox1_MA0870.1	-6	0	+	0	0	.
chr18	78603656	78603657	chr18:78603657:A:G	rs75897938	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr18	78902954	78902955	chr18:78902955:C:T	rs28498503	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr18	78945613	78945614	chr18:78945614:A:G	rs11664610	A	G	A	Sox1_MA0870.1	7	1	+	7.4003233514329425	7.003345023636435	CATAATAACATTGCT
chr18	79379493	79379494	chr18:79379494:C:A	rs11872421	C	A	A	Sox1_MA0870.1	14	1	+	9.303266592957513	8.913262672653769	AATAATAACATTGTC
chr18	79387639	79387640	chr18:79387640:G:A	rs9807411	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr18	79387641	79387642	chr18:79387642:G:C	rs304920	G	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr18	79387660	79387661	chr18:79387661:G:C	rs304921	G	C	G	Sox1_MA0870.1	7	1	+	9.18659034175489	9.153807842015357	CACAACAGCATTGTT
chr18	79657227	79657228	chr18:79657228:T:G	rs79972592	T	G	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr18	80063904	80063905	chr18:80063905:A:G	rs6506797	A	G	G	Sox1_MA0870.1	9	1	+	4.976145523449622	-1.9326092558655978	CTCAAATACAGTGTT
chr18	80150024	80150025	chr18:80150025:T:C	rs7407145	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr18	80240451	80240452	chr18:80240452:G:A	rs1122754	G	A	G	Sox1_MA0870.1	4	1	-	6.722249877363659	1.9014845578186872	GACACAATCAGTGTT
chr18	80240456	80240457	chr18:80240457:C:A	rs1122753	C	A	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr19	310095	310096	chr19:310096:T:C	rs72984410	T	C	C	Sox1_MA0870.1	1	1	-	2.2843316544662464	-1.8139590009268942	CACACTTGCTGTGTG
chr19	310102	310103	chr19:310103:T:C	rs72984411	T	C	t	Sox1_MA0870.1	-6	0	-	0	0	.
chr19	365701	365702	chr19:365702:A:G	rs113727060	A	G	-	Sox1_MA0870.1	28	0	-	0	0	.
chr19	367978	367979	chr19:367979:A:G	rs688169	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr19	393043	393044	chr19:393044:A:T	rs8112127	A	T	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr19	584675	584676	chr19:584676:A:C	rs181033148	A	C	C	Sox1_MA0870.1	5	1	-	5.505927154856488	-1.3972376037912717	CACACTTTCAGTGGG
chr19	584689	584690	chr19:584690:C:G	chr19:584690:C:G	C	G	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr19	605227	605228	chr19:605228:C:T	rs80135478	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr19	605232	605233	chr19:605233:C:T	rs116723556	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr19	616567	616568	chr19:616568:C:T	rs56291780	C	T	-	Sox1_MA0870.1	33	0	+	0	0	.
chr19	906702	906703	chr19:906703:G:C	rs59481135	G	C	-	Sox1_MA0870.1	-11	0	-	0	0	.
chr19	1040046	1040047	chr19:1040047:G:A	rs3764642	G	A	g	Sox1_MA0870.1	-4	0	+	0	0	.
chr19	1045335	1045336	chr19:1045336:A:C	rs139890952	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr19	1045373	1045374	chr19:1045374:C:T	rs73505207	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr19	1096040	1096041	chr19:1096041:A:C	rs565982279	A	C	A	Sox1_MA0870.1	3	1	+	3.487846503281694	-1.5979184217564808	AACACTTCCTGTGTG
chr19	1096044	1096045	chr19:1096045:C:G	rs17551856	C	G	G	Sox1_MA0870.1	7	1	+	3.487846503281694	3.5206290030212273	AACACTTCCTGTGTG
chr19	1414395	1414396	chr19:1414396:T:G	rs372163718	T	G	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr19	1534042	1534043	chr19:1534043:T:C	rs10853954	T	C	t	Sox1_MA0870.1	-5	0	-	0	0	.
chr19	1676419	1676420	chr19:1676420:A:T	rs4807949	A	T	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr19	1706615	1706616	chr19:1706616:G:A	rs61025941	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr19	1802942	1802943	chr19:1802943:C:T	rs76861062	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr19	2004048	2004049	chr19:2004049:G:C	rs57014166	G	C	G	Sox1_MA0870.1	27	0	-	0	0	.
chr19	2080051	2080052	chr19:2080052:C:T	rs7256023	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr19	2164599	2164600	chr19:2164600:C:T	rs960491	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr19	2371246	2371247	chr19:2371247:G:A	rs2891697	G	A	-	Sox1_MA0870.1	-13	0	-	0	0	.
chr19	2380819	2380820	chr19:2380820:G:C	rs4807247	G	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr19	2549916	2549917	chr19:2549917:T:C	rs75484337	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr19	2569947	2569948	chr19:2569948:T:G	rs10416033	T	G	G	Sox1_MA0870.1	9	1	-	7.430548461569316	0.5217936822540947	GTCACTGACATTGCT
chr19	2605014	2605015	chr19:2605015:T:A	rs75711640	T	A	t	Sox1_MA0870.1	-12	0	-	0	0	.
chr19	2607358	2607359	chr19:2607359:T:C	rs11084946	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr19	2628111	2628112	chr19:2628112:G:A	rs111586271	G	A	G	Sox1_MA0870.1	9	1	-	3.3076369850368703	3.3076369850368703	TACACTTGCCGTGTT
chr19	2703031	2703032	chr19:2703032:A:G	rs113391116	A	G	A	Sox1_MA0870.1	10	1	-	4.041572122511842	-2.7671249616244906	ATCACTGACATTCTT
chr19	2782369	2782370	chr19:2782370:A:G	rs1736188	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr19	3349397	3349398	chr19:3349398:A:G	rs7247454	A	G	A	Sox1_MA0870.1	11	1	-	5.301298031023087	0.3459030452127526	CACACAGCCAGTGTT
chr19	3737242	3737243	chr19:3737243:A:G	rs487980	A	G	a	Sox1_MA0870.1	-4	0	+	0	0	.
chr19	4145010	4145011	chr19:4145011:G:A	rs693975	G	A	a	Sox1_MA0870.1	16	0	+	0	0	.
chr19	4414712	4414713	chr19:4414713:C:T	rs105038	C	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr19	4439390	4439391	chr19:4439391:G:A	rs72990620	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr19	4439426	4439427	chr19:4439427:A:C	rs571769884	A	C	A	Sox1_MA0870.1	24	0	+	0	0	.
chr19	4575796	4575797	chr19:4575797:C:T	rs56370154	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr19	4608235	4608236	chr19:4608236:A:G	rs867691	A	G	T	Sox1_MA0870.1	11	1	-	6.785719508476227	1.8303245226658922	GACACAATCATTGCT
chr19	4645985	4645986	chr19:4645986:C:T	rs115396961	C	T	C	Sox1_MA0870.1	4	1	+	3.2794645788227186	-1.5413007407222539	GACCCTGTCATTGCA
chr19	4645991	4645992	chr19:4645992:T:C	rs116474751	T	C	T	Sox1_MA0870.1	10	1	+	3.2794645788227186	-3.529232505313615	GACCCTGTCATTGCA
chr19	4647045	4647046	chr19:4647046:G:A	rs118101039	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr19	4686040	4686041	chr19:4686041:T:C	rs7247786	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr19	4693336	4693337	chr19:4693337:G:A	rs117465167	G	A	G	Sox1_MA0870.1	4	1	-	9.239179467388258	4.418414147843286	CACACTGACAGTGTC
chr19	4749798	4749799	chr19:4749799:A:G	rs7258208	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr19	4833273	4833274	chr19:4833274:C:T	rs77428119	C	T	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr19	4915328	4915329	chr19:4915329:G:A	rs2602708	G	A	A	Sox1_MA0870.1	21	0	-	0	0	.
chr19	4915328	4915329	chr19:4915329:G:T	chr19:4915329:G:T	G	T	A	Sox1_MA0870.1	21	0	-	0	0	.
chr19	4976595	4976596	chr19:4976596:G:A	rs112220911	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr19	4976821	4976822	chr19:4976822:T:C	rs573891165	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr19	5031417	5031418	chr19:5031418:G:C	rs59027509	G	C	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr19	5031418	5031419	chr19:5031419:C:A	rs111783272	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr19	5031461	5031462	chr19:5031462:G:A	rs116196137	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr19	5166402	5166403	chr19:5166403:G:A	rs76744281	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr19	5350163	5350164	chr19:5350164:G:C	rs8112006	G	C	C	Sox1_MA0870.1	3	1	-	2.2369671067982315	0.4221423646391812	GACCATACCATAGTG
chr19	5473929	5473930	chr19:5473930:A:G	rs2890353	A	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr19	5518848	5518849	chr19:5518849:C:A	rs10423624	C	A	c	Sox1_MA0870.1	4	1	+	4.946997277611359	6.903810212236575	CACACTCTCAGTGTC
chr19	5720371	5720372	chr19:5720372:A:C	rs72979079	A	C	A	Sox1_MA0870.1	34	0	-	0	0	.
chr19	5720372	5720373	chr19:5720373:G:A	rs189210845	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr19	5720376	5720377	chr19:5720377:C:A	rs144543071	C	A	C	Sox1_MA0870.1	29	0	-	0	0	.
chr19	5720392	5720393	chr19:5720393:A:G	rs180683901	A	G	A	Sox1_MA0870.1	13	1	-	13.09533208602932	10.917676788578325	AACACTACCAGTGTT
chr19	5938183	5938184	chr19:5938184:A:G	chr19:5938184:A:G	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr19	6057841	6057842	chr19:6057842:A:C	rs62107189	A	C	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr19	6077108	6077109	chr19:6077109:A:G	rs146449661	A	G	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr19	6214854	6214855	chr19:6214855:G:A	rs3827013	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr19	6495052	6495053	chr19:6495053:C:G	rs446199	C	G	-	Sox1_MA0870.1	-9	0	-	0	0	.
chr19	6577756	6577757	chr19:6577757:G:T	chr19:6577757:G:T	G	T	G	Sox1_MA0870.1	8	1	-	2.4011540836237675	-3.4920155706944453	AACACTTCCACTGGC
chr19	6687402	6687403	chr19:6687403:C:G	rs344543	C	G	C	Sox1_MA0870.1	4	1	+	4.922434910826315	0.10166959128134312	CACACTTACTTTGTG
chr19	6796167	6796168	chr19:6796168:G:T	rs76648517	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr19	7103381	7103382	chr19:7103382:C:G	rs12462239	C	G	-	Sox1_MA0870.1	33	0	-	0	0	.
chr19	7103411	7103412	chr19:7103412:T:C	rs12460645	T	C	-	Sox1_MA0870.1	3	1	-	3.9348750793056104	-2.9657145878916142	GAAACTTCCATTGCT
chr19	7145619	7145620	chr19:7145620:G:C	rs12461909	G	C	G	Sox1_MA0870.1	15	0	+	0	0	.
chr19	7360926	7360927	chr19:7360927:G:A	rs76506685	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr19	7369749	7369750	chr19:7369750:C:T	rs8112891	C	T	T	Sox1_MA0870.1	2	1	+	4.223025222061441	-2.6857295572537816	TACTATGCCATTGCA
chr19	7380702	7380703	chr19:7380703:C:A	rs10401596	C	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr19	7398811	7398812	chr19:7398812:T:C	rs148597690	T	C	T	Sox1_MA0870.1	15	0	+	0	0	.
chr19	7476513	7476514	chr19:7476514:C:G	rs2335187	C	G	C	Sox1_MA0870.1	26	0	-	0	0	.
chr19	7479701	7479702	chr19:7479702:A:G	rs1549257	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr19	7693150	7693151	chr19:7693151:T:G	rs144566775	T	G	t	Sox1_MA0870.1	14	1	+	3.757069054499867	2.031386966781763	AGCAAAACCAGTGCT
chr19	7795877	7795878	chr19:7795878:T:C	rs10401786	T	C	c	Sox1_MA0870.1	-6	0	+	0	0	.
chr19	8074692	8074693	chr19:8074693:C:T	rs7247713	C	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr19	8269553	8269554	chr19:8269554:A:T	rs2913933	A	T	T	Sox1_MA0870.1	1	1	+	4.494482446639215	1.2171981994780738	AAAAATAACAGTGCA
chr19	8308648	8308649	chr19:8308649:A:C	rs2232767	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr19	8356343	8356344	chr19:8356344:G:A	rs116636690	G	A	G	Sox1_MA0870.1	0	1	+	6.789438045984188	8.131561188790942	GAAAATATCAGTGTT
chr19	8448055	8448056	chr19:8448056:T:G	rs17160491	T	G	T	Sox1_MA0870.1	4	1	-	3.065811838350961	1.1089989037257446	AGCAACTTCAGTGTT
chr19	8488515	8488516	chr19:8488516:G:A	rs1599870	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr19	8601987	8601988	chr19:8601988:G:A	rs7257902	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr19	8811613	8811614	chr19:8811614:A:G	rs781927784	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr19	8821847	8821848	chr19:8821848:T:C	rs12978839	T	C	T	Sox1_MA0870.1	10	1	+	4.571549616636597	-2.237147467499736	CACACTGACATTTTC
chr19	8938472	8938473	chr19:8938473:G:A	rs12461007	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr19	9321230	9321231	chr19:9321231:T:C	rs2082426	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr19	9581880	9581881	chr19:9581881:T:C	rs8102702	T	C	C	Sox1_MA0870.1	14	1	+	3.620591729728663	2.109582325247258	CAGAATGACAGTGCT
chr19	9584608	9584609	chr19:9584609:A:G	rs943662458	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr19	9584646	9584647	chr19:9584647:C:T	rs142849458	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr19	9786954	9786955	chr19:9786955:C:A	rs28441975	C	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr19	9819937	9819938	chr19:9819938:T:C	chr19:9819938:T:C	T	C	T	Sox1_MA0870.1	0	1	+	5.790094866877446	6.492471624024926	TTCACTTTCATTGAT
chr19	9987254	9987255	chr19:9987255:A:C	rs8101390	A	C	A	Sox1_MA0870.1	6	1	-	9.072790852222152	8.507232874795736	CGCAATTTCATTGTA
chr19	9987304	9987305	chr19:9987305:C:G	rs8100973	C	G	G	Sox1_MA0870.1	28	0	-	0	0	.
chr19	10126508	10126509	chr19:10126509:A:G	rs60553752	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr19	10145109	10145110	chr19:10145110:G:A	rs10412529	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr19	10191415	10191416	chr19:10191416:T:C	rs572771476	T	C	T	Sox1_MA0870.1	11	1	+	6.0500115866352235	1.0946166008248894	TACAATTTCAATGTC
chr19	10265553	10265554	chr19:10265554:G:T	rs11085723	G	T	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr19	10421975	10421976	chr19:10421976:C:G	rs115702202	C	G	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr19	10421975	10421976	chr19:10421976:C:T	chr19:10421976:C:T	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr19	10421977	10421978	chr19:10421978:G:A	rs74806945	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr19	10426415	10426416	chr19:10426416:C:T	rs7249459	C	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr19	10505958	10505959	chr19:10505959:G:A	rs904842868	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr19	10505967	10505968	chr19:10505968:C:T	rs13346189	C	T	T	Sox1_MA0870.1	8	1	+	4.0174832622285495	-0.16412628440873311	CACACATTCATTGCA
chr19	10662520	10662521	chr19:10662521:G:C	rs75482781	G	C	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr19	10662547	10662548	chr19:10662548:C:G	rs116886189	C	G	C	Sox1_MA0870.1	25	0	+	0	0	.
chr19	10691524	10691525	chr19:10691525:A:G	rs79169271	A	G	A	Sox1_MA0870.1	5	1	-	4.255977515237982	-2.647187243409777	GCCACTGTCAGTGCT
chr19	10824146	10824147	chr19:10824147:T:C	rs67417605	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr19	11060162	11060163	chr19:11060163:T:C	rs7275	T	C	C	Sox1_MA0870.1	9	1	-	2.8060352828959294	-4.102719496419291	CTCACTGTCATCGTC
chr19	11145115	11145116	chr19:11145116:C:T	rs113568099	C	T	C	Sox1_MA0870.1	7	1	+	4.913945887478301	4.902116834929927	GACACTACCATGGCT
chr19	11193821	11193822	chr19:11193822:C:T	rs755238	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr19	11273530	11273531	chr19:11273531:C:G	rs1869772	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr19	11356064	11356065	chr19:11356065:C:G	rs4804161	C	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr19	11396969	11396970	chr19:11396970:A:T	rs367071	A	T	A	Sox1_MA0870.1	20	0	-	0	0	.
chr19	11813738	11813739	chr19:11813739:G:T	rs186244408	G	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr19	11857001	11857002	chr19:11857002:A:C	rs279207	A	C	a	Sox1_MA0870.1	4	1	-	4.429005384703066	4.429005384703066	CCCATTAACATTGTC
chr19	11881424	11881425	chr19:11881425:C:A	rs142975919	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr19	11881445	11881446	chr19:11881446:G:A	rs73921177	G	A	G	Sox1_MA0870.1	14	1	+	5.8147779074527755	5.639446670385731	CACACTTCCAGTGAG
chr19	12056553	12056554	chr19:12056554:C:T	rs73923372	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr19	12105942	12105943	chr19:12105943:G:T	rs66539237	G	T	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr19	12273764	12273765	chr19:12273765:T:C	rs11879168	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr19	12384207	12384208	chr19:12384208:C:A	rs8105975	C	A	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr19	12563939	12563940	chr19:12563940:T:A	rs117961214	T	A	T	Sox1_MA0870.1	21	0	-	0	0	.
chr19	12563940	12563941	chr19:12563941:C:A	rs79337745	C	A	C	Sox1_MA0870.1	20	0	-	0	0	.
chr19	12610436	12610437	chr19:12610437:G:C	rs12104314	G	C	G	Sox1_MA0870.1	11	1	-	4.098622794535315	2.1512850934888164	GACCATAACAGCGTT
chr19	12630709	12630710	chr19:12630710:T:A	rs118082271	T	A	t	Sox1_MA0870.1	3	1	-	12.493147245027178	6.978851938949843	ATCAATATCATTGTC
chr19	12676332	12676333	chr19:12676333:G:A	rs111806312	G	A	G	Sox1_MA0870.1	2	1	-	3.8233253223312937	-3.085429456983926	AACACAGCCATCGTT
chr19	12681562	12681563	chr19:12681563:G:A	rs11541391	G	A	G	Sox1_MA0870.1	6	1	+	4.608848051153194	6.147454744293912	CACCATGGCATTGAC
chr19	12681575	12681576	chr19:12681576:T:C	rs34610671	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr19	12950754	12950755	chr19:12950755:A:G	rs62109870	A	G	A	Sox1_MA0870.1	5	1	-	7.921148383730396	1.0179836250826364	AACTCTACCATTGTA
chr19	13117880	13117881	chr19:13117881:G:A	rs4302161	G	A	-	Sox1_MA0870.1	27	0	-	0	0	.
chr19	13774312	13774313	chr19:13774313:A:G	rs346155	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr19	13774333	13774334	chr19:13774334:C:T	rs530643564	C	T	C	Sox1_MA0870.1	9	1	+	4.763346041857094	4.763346041857094	TACACTACCCTTGTG
chr19	13828036	13828037	chr19:13828037:G:C	rs113917348	G	C	C	Sox1_MA0870.1	20	0	+	0	0	.
chr19	13866546	13866547	chr19:13866547:C:T	rs910301557	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr19	13900119	13900120	chr19:13900120:A:G	rs7507907	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr19	13913455	13913456	chr19:13913456:C:T	rs61740117	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr19	14061915	14061916	chr19:14061916:C:T	rs36014207	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr19	14187629	14187630	chr19:14187630:A:G	rs2420416	A	G	g	Sox1_MA0870.1	5	1	-	1.827620566024756	-5.075544192623003	GACACTGGCCGTGTC
chr19	14449424	14449425	chr19:14449425:G:T	rs13345557	G	T	G	Sox1_MA0870.1	0	1	-	3.1202996376115717	4.3565969861665526	CACAAAGACACTGTT
chr19	14456380	14456381	chr19:14456381:T:C	rs6511932	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr19	14892324	14892325	chr19:14892325:G:A	rs61734241	G	A	g	Sox1_MA0870.1	0	1	-	3.5637250057105687	2.8613482485630883	CATAATGGCATTGCA
chr19	15252660	15252661	chr19:15252661:C:T	rs147287184	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr19	15252665	15252666	chr19:15252666:A:G	rs8104223	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr19	15252668	15252669	chr19:15252669:G:A	rs115045911	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr19	15574660	15574661	chr19:15574661:T:G	rs62115110	T	G	t	Sox1_MA0870.1	12	1	+	7.224187386462212	14.132942165777433	CACACTAGCATTTTT
chr19	15686598	15686599	chr19:15686599:T:A	rs645827	T	A	A	Sox1_MA0870.1	6	1	-	3.2177659748724476	2.244717259158146	TTCACTACCATAGTT
chr19	16005714	16005715	chr19:16005715:G:T	rs10401940	G	T	G	Sox1_MA0870.1	0	1	+	3.587452482483988	2.9909015195882813	GTCAATACCATTTCT
chr19	16224006	16224007	chr19:16224007:C:T	rs2168635	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr19	16384520	16384521	chr19:16384521:G:A	rs150423243	G	A	G	Sox1_MA0870.1	12	1	+	3.854023654041883	-3.054731125273338	CACACTGCCAGCGTC
chr19	16445410	16445411	chr19:16445411:G:C	rs79083128	G	C	G	Sox1_MA0870.1	20	0	+	0	0	.
chr19	16505608	16505609	chr19:16505609:A:C	rs8109218	A	C	A	Sox1_MA0870.1	19	0	+	0	0	.
chr19	16778914	16778915	chr19:16778915:T:C	rs80269479	T	C	.	Sox1_MA0870.1	27	0	+	0	0	.
chr19	16778915	16778916	chr19:16778916:G:A	rs76186997	G	A	.	Sox1_MA0870.1	28	0	+	0	0	.
chr19	17071206	17071207	chr19:17071207:T:C	rs7259348	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr19	17309355	17309356	chr19:17309356:T:C	rs11086068	T	C	T	Sox1_MA0870.1	7	1	+	7.660342353163092	7.672171405711465	CTCACTTTCATTGCT
chr19	17309363	17309364	chr19:17309364:T:G	rs561198785	T	G	T	Sox1_MA0870.1	15	0	+	0	0	.
chr19	17468707	17468708	chr19:17468708:T:A	rs187880723	T	A	t	Sox1_MA0870.1	24	0	+	0	0	.
chr19	17622468	17622469	chr19:17622469:G:A	rs74551295	G	A	G	Sox1_MA0870.1	7	1	+	5.706534912297936	6.103513240094443	TACAAATGCATTGCC
chr19	17753544	17753545	chr19:17753545:A:G	rs4808684	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr19	17784800	17784801	chr19:17784801:T:C	rs201872695	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr19	17872693	17872694	chr19:17872694:G:T	rs34850953	G	T	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr19	17930499	17930500	chr19:17930500:G:C	rs12981688	G	C	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr19	18312216	18312217	chr19:18312217:C:T	rs56240721	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr19	18357075	18357076	chr19:18357076:T:C	rs7248363	T	C	C	Sox1_MA0870.1	5	1	+	3.4147894895251394	-3.488375269122621	AACACTTGCATAGCA
chr19	18773027	18773028	chr19:18773028:T:C	rs79387512	T	C	T	Sox1_MA0870.1	1	1	-	4.136795948831496	0.03850529343835518	AACCATTCCAGTGAC
chr19	18793639	18793640	chr19:18793640:G:A	rs59462327	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr19	19179627	19179628	chr19:19179628:G:A	rs10854010	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr19	19179631	19179632	chr19:19179632:C:T	rs10854011	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr19	19485007	19485008	chr19:19485008:A:G	rs142344339	A	G	A	Sox1_MA0870.1	9	1	+	4.154550793640779	-2.7542039856744407	GCCCCTTTCATTGTT
chr19	19547662	19547663	chr19:19547663:G:T	rs16996148	G	T	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr19	19752156	19752157	chr19:19752157:C:T	rs247790	C	T	c	Sox1_MA0870.1	-10	0	+	0	0	.
chr19	19752160	19752161	chr19:19752161:G:C	rs8103257	G	C	g	Sox1_MA0870.1	-6	0	+	0	0	.
chr19	19944476	19944477	chr19:19944477:G:A	rs10414919	G	A	N	Sox1_MA0870.1	-17	0	+	0	0	.
chr19	19956697	19956698	chr19:19956698:G:T	rs73532745	G	T	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr19	20130120	20130121	chr19:20130121:T:A	rs6511081	T	A	.	Sox1_MA0870.1	7	1	-	3.643422981769426	3.2018331016850117	TTCACTGACATTGGG
chr19	20209381	20209382	chr19:20209382:A:C	rs73542118	A	C	.	Sox1_MA0870.1	-15	0	-	0	0	.
chr19	20356864	20356865	chr19:20356865:C:G	rs10416464	C	G	.	Sox1_MA0870.1	-20	0	-	0	0	.
chr19	20874039	20874040	chr19:20874040:C:T	rs73007004	C	T	-	Sox1_MA0870.1	-18	0	+	0	0	.
chr19	21210291	21210292	chr19:21210292:A:G	rs7247871	A	G	G	Sox1_MA0870.1	9	1	+	4.338045633528599	-2.5707091457866205	CCCACTAATAGTGTT
chr19	21908068	21908069	chr19:21908069:G:T	rs1229926	G	T	g	Sox1_MA0870.1	8	1	-	2.2336949429597883	-3.659474711358424	GACAATACCCCTGTT
chr19	21916835	21916836	chr19:21916836:A:G	rs1613145	A	G	N	Sox1_MA0870.1	-8	0	-	0	0	.
chr19	21924148	21924149	chr19:21924149:A:G	rs1634459	A	G	a	Sox1_MA0870.1	29	0	+	0	0	.
chr19	22619580	22619581	chr19:22619581:A:G	rs10403670	A	G	.	Sox1_MA0870.1	10	1	-	2.5345822454642897	-4.274114838672044	CACAGAACCATTGTG
chr19	23038264	23038265	chr19:23038265:T:C	rs290579	T	C	-	Sox1_MA0870.1	4	1	-	2.8037880202551286	-3.973790233915058	GCCAATCACAGTGCT
chr19	23491689	23491690	chr19:23491690:G:A	rs10422559	G	A	.	Sox1_MA0870.1	-12	0	+	0	0	.
chr19	23510122	23510123	chr19:23510123:G:A	rs7259933	G	A	G	Sox1_MA0870.1	14	1	-	3.910710428658509	5.421719833139914	GACATTAATATTGTC
chr19	23548029	23548030	chr19:23548030:G:A	rs7249974	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr19	23597960	23597961	chr19:23597961:C:T	rs35810115	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr19	23777728	23777729	chr19:23777729:C:T	rs115158089	C	T	C	Sox1_MA0870.1	0	1	+	7.857886581833293	7.155509824685813	CACAAGAACATTGTG
chr19	23872740	23872741	chr19:23872741:G:T	rs148467455	G	T	g	Sox1_MA0870.1	-5	0	+	0	0	.
chr19	24019186	24019187	chr19:24019187:C:T	rs540803635	C	T	C	Sox1_MA0870.1	14	1	-	3.5368639341803796	3.3615326971133355	CACCCTAATATTGTG
chr19	24038925	24038926	chr19:24038926:G:C	rs67381910	G	C	G	Sox1_MA0870.1	12	1	+	3.2679200162108977	-3.640834763104323	CACATTTGCATTGAG
chr19	24372136	24372137	chr19:24372137:C:T	rs2124632	C	T	.	Sox1_MA0870.1	-10	0	-	0	0	.
chr19	24897014	24897015	chr19:24897015:A:G	rs879230966	A	G	.	Sox1_MA0870.1	25	0	-	0	0	.
chr19	24908000	24908001	chr19:24908001:G:T	rs1299623134	G	T	.	Sox1_MA0870.1	32	0	-	0	0	.
chr19	24908024	24908025	chr19:24908025:G:A	rs1488832963	G	A	.	Sox1_MA0870.1	8	1	-	3.4403492877538104	-0.7412602588834722	CTCTCTAGCATTGTA
chr19	27351390	27351391	chr19:27351391:A:G	rs3961203	A	G	.	Sox1_MA0870.1	27	0	+	0	0	.
chr19	27355305	27355306	chr19:27355306:G:A	rs4552125	G	A	.	Sox1_MA0870.1	10	1	+	4.753598736277245	0.1860265807044731	TACAAAAAGAGTGTT
chr19	27355321	27355322	chr19:27355322:C:T	rs4465711	C	T	.	Sox1_MA0870.1	26	0	+	0	0	.
chr19	27379630	27379631	chr19:27379631:C:T	rs4041545	C	T	.	Sox1_MA0870.1	31	0	-	0	0	.
chr19	27398172	27398173	chr19:27398173:A:G	rs112252630	A	G	.	Sox1_MA0870.1	4	1	+	4.753598736277245	-2.023979517892943	TACAAAAAGAGTGTT
chr19	27661556	27661557	chr19:27661557:C:T	rs8110314	C	T	.	Sox1_MA0870.1	-18	0	+	0	0	.
chr19	27752514	27752515	chr19:27752515:C:A	rs8108442	C	A	.	Sox1_MA0870.1	-4	0	-	0	0	.
chr19	27894592	27894593	chr19:27894593:G:A	rs717661	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr19	28010260	28010261	chr19:28010261:T:C	rs10439140	T	C	T	Sox1_MA0870.1	13	1	+	7.571139529847016	5.3934842323960215	GAAAATAACATTGTA
chr19	28209715	28209716	chr19:28209716:C:T	rs1820705	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr19	28209734	28209735	chr19:28209735:T:C	rs17621926	T	C	T	Sox1_MA0870.1	4	1	-	3.180406112889272	-3.5971721412809172	ACCCATGGCAGTGTC
chr19	28227463	28227464	chr19:28227464:G:A	rs118045192	G	A	G	Sox1_MA0870.1	13	1	-	5.635360931035941	7.8130162284869344	CTCACTGACATTGCA
chr19	28325464	28325465	chr19:28325465:C:A	rs75106928	C	A	C	Sox1_MA0870.1	2	1	+	7.597782075658804	0.6890272963435832	CACAATGTCATTATT
chr19	28467082	28467083	chr19:28467083:C:T	rs2190830	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr19	28472186	28472187	chr19:28472187:T:G	rs958980	T	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr19	28472189	28472190	chr19:28472190:C:G	rs2215122	C	G	C	Sox1_MA0870.1	2	1	+	2.4082669464277475	-4.50048783288747	AACGAGAACATTGTC
chr19	28474178	28474179	chr19:28474179:T:C	rs117318405	T	C	T	Sox1_MA0870.1	4	1	-	4.753149500935299	-2.0244287532348877	TTCAATATCAGTGAG
chr19	29090910	29090911	chr19:29090911:A:C	rs78855999	A	C	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr19	29118274	29118275	chr19:29118275:C:T	rs888303	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr19	29170677	29170678	chr19:29170678:C:A	rs55905172	C	A	C	Sox1_MA0870.1	32	0	+	0	0	.
chr19	29257931	29257932	chr19:29257932:A:G	rs56014828	A	G	A	Sox1_MA0870.1	3	1	+	5.265169169563992	-1.6354204976332345	AACACTTTCATTTCT
chr19	29330186	29330187	chr19:29330187:G:C	rs10853797	G	C	G	Sox1_MA0870.1	28	0	-	0	0	.
chr19	29330216	29330217	chr19:29330217:G:A	rs10853798	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr19	29482082	29482083	chr19:29482083:C:A	rs10412058	C	A	C	Sox1_MA0870.1	28	0	+	0	0	.
chr19	29616713	29616714	chr19:29616714:C:T	rs2042970	C	T	t	Sox1_MA0870.1	-4	0	-	0	0	.
chr19	29658730	29658731	chr19:29658731:G:A	rs76456633	G	A	g	Sox1_MA0870.1	25	0	+	0	0	.
chr19	29687585	29687586	chr19:29687586:C:T	rs73033934	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr19	29714943	29714944	chr19:29714944:A:G	rs186970109	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr19	29810627	29810628	chr19:29810628:G:A	rs36225398	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr19	29830816	29830817	chr19:29830817:A:G	rs77319773	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr19	29846219	29846220	chr19:29846220:A:C	rs4805487	A	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr19	30122684	30122685	chr19:30122685:C:T	rs4804918	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr19	30363589	30363590	chr19:30363590:G:A	rs79691856	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr19	30386905	30386906	chr19:30386906:C:T	rs11084549	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr19	30418596	30418597	chr19:30418597:G:A	rs10406549	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr19	30428372	30428373	chr19:30428373:G:A	rs74852731	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr19	30607006	30607007	chr19:30607007:A:T	rs12459985	A	T	T	Sox1_MA0870.1	20	0	-	0	0	.
chr19	30621631	30621632	chr19:30621632:T:C	rs8109458	T	C	T	Sox1_MA0870.1	11	1	-	5.801168076586771	5.801168076586771	AACAAAAACATAGTT
chr19	30642033	30642034	chr19:30642034:A:T	rs2195955	A	T	A	Sox1_MA0870.1	23	0	-	0	0	.
chr19	30726406	30726407	chr19:30726407:A:T	rs4805605	A	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr19	30779569	30779570	chr19:30779570:G:A	rs138814201	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr19	30858850	30858851	chr19:30858851:A:G	rs10424169	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr19	31161860	31161861	chr19:31161861:T:C	rs4804949	T	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr19	31282854	31282855	chr19:31282855:C:T	rs76908175	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr19	31391110	31391111	chr19:31391111:T:A	rs2542295	T	A	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr19	31484620	31484621	chr19:31484621:C:G	rs12973745	C	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr19	31610255	31610256	chr19:31610256:G:A	rs75871590	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr19	31838388	31838389	chr19:31838389:C:A	rs146264252	C	A	C	Sox1_MA0870.1	0	1	+	5.3038343306104405	6.540131679165421	CACAATTTTAGTGAT
chr19	31962811	31962812	chr19:31962812:C:T	rs190210298	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr19	32039652	32039653	chr19:32039653:T:C	rs16966646	T	C	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr19	32168432	32168433	chr19:32168433:T:C	rs1859957	T	C	T	Sox1_MA0870.1	4	1	-	2.713129132810525	-4.0644491213596625	CCCAATTGCATTCTG
chr19	32178692	32178693	chr19:32178693:C:T	rs73578770	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr19	32289666	32289667	chr19:32289667:A:G	rs1434620764	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr19	32613398	32613399	chr19:32613399:A:G	rs369859	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr19	32615714	32615715	chr19:32615715:C:T	rs405858	C	T	c	Sox1_MA0870.1	17	0	-	0	0	.
chr19	32647160	32647161	chr19:32647161:T:C	rs259219	T	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr19	32812913	32812914	chr19:32812914:A:G	rs8107257	A	G	A	Sox1_MA0870.1	1	1	+	3.054012122471559	-1.0442785329215805	TATAATTCCAGTGCT
chr19	32814019	32814020	chr19:32814020:C:T	rs8110811	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr19	32837667	32837668	chr19:32837668:T:C	rs116252002	T	C	T	Sox1_MA0870.1	0	1	+	3.2723239243202986	3.97470068146778	TGCAATAACATGGTC
chr19	32837676	32837677	chr19:32837677:A:G	rs9676558	A	G	A	Sox1_MA0870.1	9	1	+	3.2723239243202986	-3.636430854994922	TGCAATAACATGGTC
chr19	32911794	32911795	chr19:32911795:G:A	rs12609689	G	A	G	Sox1_MA0870.1	8	1	-	4.084158201566263	-0.09745134507101916	CTCCATAGCATTGGT
chr19	33263807	33263808	chr19:33263808:C:G	rs960619403	C	G	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr19	33265163	33265164	chr19:33265164:C:T	rs10424624	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr19	33473274	33473275	chr19:33473275:T:C	rs11880064	T	C	C	Sox1_MA0870.1	9	1	-	2.663004406789488	-4.245750372525731	TCCAGTAGCATTGCT
chr19	33478084	33478085	chr19:33478085:T:A	rs61748998	T	A	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr19	33498228	33498229	chr19:33498229:G:C	rs3786918	G	C	G	Sox1_MA0870.1	2	1	-	4.607918171564768	-2.300836607750452	GCCACTGCCATTGCA
chr19	33587041	33587042	chr19:33587042:C:T	rs10423276	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr19	33660872	33660873	chr19:33660873:C:G	rs62103460	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr19	33705291	33705292	chr19:33705292:G:A	rs144665404	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr19	33752642	33752643	chr19:33752643:A:G	rs71351740	A	G	G	Sox1_MA0870.1	9	1	+	2.2827582660263563	-4.6259965132888645	CTCATTAGCAGTGTC
chr19	33831231	33831232	chr19:33831232:A:G	rs11084753	A	G	G	Sox1_MA0870.1	3	1	+	5.7622603228619	-1.1383293443353253	TTCAAAAACATTGTG
chr19	33833052	33833053	chr19:33833053:G:A	rs521594	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr19	33885112	33885113	chr19:33885113:G:A	rs2017094	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr19	34104739	34104740	chr19:34104740:G:A	rs10406644	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr19	34104784	34104785	chr19:34104785:G:A	rs11881397	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr19	34119793	34119794	chr19:34119794:A:G	rs17337062	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr19	34122370	34122371	chr19:34122371:A:C	rs1867701	A	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr19	34181161	34181162	chr19:34181162:C:G	rs117558454	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr19	34181161	34181162	chr19:34181162:C:T	chr19:34181162:C:T	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr19	34246519	34246520	chr19:34246520:A:C	rs6510416	A	C	a	Sox1_MA0870.1	3	1	+	3.6790471413961026	-1.4067177836420726	GACAATAGGAATGTG
chr19	34254159	34254160	chr19:34254160:T:C	rs185583631	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr19	34254179	34254180	chr19:34254180:T:C	chr19:34254180:T:C	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr19	34592762	34592763	chr19:34592763:T:A	rs73038274	T	A	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr19	35118003	35118004	chr19:35118004:C:T	rs59017116	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr19	35176288	35176289	chr19:35176289:G:A	rs7255878	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr19	35182020	35182021	chr19:35182021:C:T	rs12984052	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr19	35309816	35309817	chr19:35309817:G:C	rs10411883	G	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr19	35357436	35357437	chr19:35357437:G:A	rs12459138	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr19	35434711	35434712	chr19:35434712:C:T	rs115159567	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr19	35434712	35434713	chr19:35434713:G:A	rs116710914	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr19	35631876	35631877	chr19:35631877:A:G	rs931147038	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr19	35773233	35773234	chr19:35773234:C:T	chr19:35773234:C:T	C	T	C	Sox1_MA0870.1	7	1	+	2.935303824774352	2.923474772225979	GTCACTTCCACTGTT
chr19	35777568	35777569	chr19:35777569:G:A	rs12982672	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr19	36006455	36006456	chr19:36006456:C:G	rs2285422	C	G	G	Sox1_MA0870.1	33	0	-	0	0	.
chr19	36417774	36417775	chr19:36417775:T:C	rs73043902	T	C	T	Sox1_MA0870.1	6	1	-	3.159467467820701	1.620860774679983	AACCACAGCATTGCT
chr19	36997294	36997295	chr19:36997295:G:A	rs1345748	G	A	A	Sox1_MA0870.1	8	1	-	3.7106374052917657	-0.470972141345516	TACACTTACAGGGTT
chr19	37128664	37128665	chr19:37128665:A:T	rs61745776	A	T	A	Sox1_MA0870.1	4	1	+	3.4859655627100663	-3.2916126914601205	AACCATATCAATGTA
chr19	37669481	37669482	chr19:37669482:T:G	rs56281742	T	G	t	Sox1_MA0870.1	-12	0	-	0	0	.
chr19	37691396	37691397	chr19:37691397:C:T	rs187469752	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr19	37858629	37858630	chr19:37858630:G:T	rs11083439	G	T	T	Sox1_MA0870.1	24	0	-	0	0	.
chr19	37875017	37875018	chr19:37875018:C:T	rs115416900	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr19	37875054	37875055	chr19:37875055:A:G	rs7254809	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr19	38019439	38019440	chr19:38019440:T:C	rs754337510	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr19	38262984	38262985	chr19:38262985:T:C	rs7250689	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr19	38429733	38429734	chr19:38429734:A:G	rs139319841	A	G	A	Sox1_MA0870.1	1	1	+	4.72943759533334	0.6311469399402005	CACAATACCCGTGCT
chr19	38429741	38429742	chr19:38429742:C:A	rs2043299	C	A	A	Sox1_MA0870.1	9	1	+	4.72943759533334	11.63819237464856	CACAATACCCGTGCT
chr19	38429753	38429754	chr19:38429754:T:C	rs16972591	T	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr19	38506682	38506683	chr19:38506683:T:C	rs2915957	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr19	38544130	38544131	chr19:38544131:T:C	rs2292800	T	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr19	38635064	38635065	chr19:38635065:G:C	rs149596689	G	C	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr19	38698830	38698831	chr19:38698831:G:A	rs959413846	G	A	G	Sox1_MA0870.1	0	1	-	2.9061100039501357	2.203733246802656	CGCCATACCAGTGTG
chr19	38850306	38850307	chr19:38850307:G:C	chr19:38850307:G:C	G	C	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr19	38850326	38850327	chr19:38850327:G:A	rs540167001	G	A	G	Sox1_MA0870.1	12	1	+	5.703593786293654	-1.205160993021566	CCCACTTTCATTGGT
chr19	38850330	38850331	chr19:38850331:T:A	rs80347831	T	A	T	Sox1_MA0870.1	16	0	+	0	0	.
chr19	38939686	38939687	chr19:38939687:A:G	rs6508829	A	G	a	Sox1_MA0870.1	-4	0	-	0	0	.
chr19	39033167	39033168	chr19:39033168:C:G	rs184576548	C	G	C	Sox1_MA0870.1	23	0	-	0	0	.
chr19	39033197	39033198	chr19:39033198:T:G	chr19:39033198:T:G	T	G	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr19	39378899	39378900	chr19:39378900:C:G	rs16973374	C	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr19	39397131	39397132	chr19:39397132:A:G	rs116914866	A	G	A	Sox1_MA0870.1	11	1	-	3.3046096550780346	-1.6507853307322988	GCTACTATCATTGTT
chr19	39660325	39660326	chr19:39660326:A:T	chr19:39660326:A:T	A	T	-	Sox1_MA0870.1	-9	0	-	0	0	.
chr19	39731002	39731003	chr19:39731003:A:G	rs440191	A	G	-	Sox1_MA0870.1	4	1	+	4.720977915534421	-2.0566003386357665	CCCAATCCCATTGCT
chr19	39915951	39915952	chr19:39915952:G:A	rs78655842	G	A	.	Sox1_MA0870.1	-15	0	-	0	0	.
chr19	39996408	39996409	chr19:39996409:G:A	rs564113117	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr19	40085274	40085275	chr19:40085275:T:C	rs337799	T	C	C	Sox1_MA0870.1	9	1	-	7.478056770652459	0.5693019913372384	AACACTGCCAGTGCA
chr19	40085301	40085302	chr19:40085302:A:G	rs337800	A	G	G	Sox1_MA0870.1	7	1	-	7.4662277181040855	7.478056770652459	AACACTGTCAGTGCA
chr19	40165869	40165870	chr19:40165870:C:T	rs148737435	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr19	40357934	40357935	chr19:40357935:A:G	rs8110995	A	G	G	Sox1_MA0870.1	14	1	-	6.206527118460004	4.6955177139785995	CACACTTTCATTCTT
chr19	40445963	40445964	chr19:40445964:A:T	rs563054185	A	T	A	Sox1_MA0870.1	31	0	-	0	0	.
chr19	40462934	40462935	chr19:40462935:A:G	rs4802078	A	G	A	Sox1_MA0870.1	0	1	+	5.710972699707803	4.368849556901049	AAAAATTTCATTGCC
chr19	40989527	40989528	chr19:40989528:A:G	rs3760657	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr19	41133300	41133301	chr19:41133301:G:A	rs113668217	G	A	.	Sox1_MA0870.1	-14	0	+	0	0	.
chr19	41133309	41133310	chr19:41133310:C:T	rs62117451	C	T	.	Sox1_MA0870.1	-5	0	+	0	0	.
chr19	41160016	41160017	chr19:41160017:G:A	rs1044586250	G	A	.	Sox1_MA0870.1	2	1	-	5.168978515305145	-1.7397762640100738	TACAAATTTATTGTT
chr19	41621114	41621115	chr19:41621115:T:A	rs3890967	T	A	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr19	41642089	41642090	chr19:41642090:G:C	rs544418239	G	C	G	Sox1_MA0870.1	32	0	-	0	0	.
chr19	41642096	41642097	chr19:41642097:C:T	rs562865964	C	T	c	Sox1_MA0870.1	25	0	-	0	0	.
chr19	41695577	41695578	chr19:41695578:T:C	rs12461373	T	C	t	Sox1_MA0870.1	5	1	+	6.025558429213534	-0.877606329434226	GACAATGGCCTTGTC
chr19	42075410	42075411	chr19:42075411:C:T	rs1299062568	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr19	42075421	42075422	chr19:42075422:C:G	rs143455202	C	G	C	Sox1_MA0870.1	13	1	-	9.42270798672645	10.887600415912527	GACAATTTCATTGGA
chr19	42134333	42134334	chr19:42134334:A:G	rs78776171	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr19	42179715	42179716	chr19:42179716:C:T	rs117681325	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr19	42271252	42271253	chr19:42271253:C:T	rs874013	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr19	42295903	42295904	chr19:42295904:G:C	rs79653946	G	C	G	Sox1_MA0870.1	10	1	+	3.481676823692615	-1.085895331880157	AACAATTCCAGTACC
chr19	42354640	42354641	chr19:42354641:T:C	rs61995685	T	C	T	Sox1_MA0870.1	3	1	-	5.295847714718619	-1.6047419524786068	GACAACACCAGTGTC
chr19	42683901	42683902	chr19:42683902:C:T	rs11881890	C	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr19	42767720	42767721	chr19:42767721:G:C	rs143007017	G	C	g	Sox1_MA0870.1	21	0	-	0	0	.
chr19	42989857	42989858	chr19:42989858:C:T	rs10853761	C	T	.	Sox1_MA0870.1	11	1	+	3.8251885496939755	8.78058353550431	CCCACTGTCATCGTT
chr19	43029786	43029787	chr19:43029787:T:G	rs12459659	T	G	.	Sox1_MA0870.1	-10	0	+	0	0	.
chr19	43228843	43228844	chr19:43228844:C:T	rs12609490	C	T	.	Sox1_MA0870.1	-13	0	-	0	0	.
chr19	43302406	43302407	chr19:43302407:T:C	rs1005636	T	C	.	Sox1_MA0870.1	27	0	+	0	0	.
chr19	43306635	43306636	chr19:43306636:C:T	rs67956795	C	T	.	Sox1_MA0870.1	19	0	-	0	0	.
chr19	43447293	43447294	chr19:43447294:C:T	rs78269666	C	T	C	Sox1_MA0870.1	13	1	-	3.4251839584243404	3.7222056584722547	AACAAGAACAGTGGC
chr19	43448285	43448286	chr19:43448286:G:A	rs79399417	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr19	43540733	43540734	chr19:43540734:A:G	rs2599462	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr19	43620582	43620583	chr19:43620583:T:C	rs3046	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr19	43673984	43673985	chr19:43673985:T:C	rs344778	T	C	t	Sox1_MA0870.1	-4	0	+	0	0	.
chr19	43674477	43674478	chr19:43674478:G:C	rs344775	G	C	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr19	43674496	43674497	chr19:43674497:A:G	rs344774	A	G	G	Sox1_MA0870.1	9	1	+	4.164405776646946	-2.7443490026682738	GCCAATGACATTCTT
chr19	43764172	43764173	chr19:43764173:C:G	rs1058	C	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr19	43809729	43809730	chr19:43809730:G:T	rs10406421	G	T	G	Sox1_MA0870.1	10	1	+	5.44465943790691	7.685784366470472	AACAATTCCAGTCTG
chr19	43830076	43830077	chr19:43830077:T:C	rs73052639	T	C	T	Sox1_MA0870.1	7	1	-	4.56960618056183	4.172627852765322	AACAAAAAAAGTGTT
chr19	43991992	43991993	chr19:43991993:T:C	rs421505	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr19	44039634	44039635	chr19:44039635:A:T	rs55958002	A	T	.	Sox1_MA0870.1	-20	0	+	0	0	.
chr19	44526044	44526045	chr19:44526045:C:T	rs115766263	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr19	44526072	44526073	chr19:44526073:G:C	rs116073571	G	C	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr19	44538507	44538508	chr19:44538508:A:C	rs17714646	A	C	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr19	44587784	44587785	chr19:44587785:C:A	rs75190624	C	A	C	Sox1_MA0870.1	29	0	-	0	0	.
chr19	44587823	44587824	chr19:44587824:G:A	rs74485475	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr19	44633082	44633083	chr19:44633083:T:C	rs60519804	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr19	44683600	44683601	chr19:44683601:G:T	rs62119327	G	T	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr19	45040682	45040683	chr19:45040683:A:G	rs138292273	A	G	A	Sox1_MA0870.1	4	1	+	5.006919064631488	-1.7706591895386996	CACAATAGGAGTGAG
chr19	45403323	45403324	chr19:45403324:C:T	chr19:45403324:C:T	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr19	45468387	45468388	chr19:45468388:C:A	rs1450827658	C	A	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr19	45518255	45518256	chr19:45518256:C:T	rs2239378	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr19	45523104	45523105	chr19:45523105:C:T	rs78549131	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr19	45635493	45635494	chr19:45635494:A:G	rs773670764	A	G	A	Sox1_MA0870.1	5	1	-	3.5678548137512394	-3.335309944896519	TCCAATGACCTTGTT
chr19	45843071	45843072	chr19:45843072:T:C	rs8106955	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr19	45877844	45877845	chr19:45877845:G:A	rs112120887	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr19	45905097	45905098	chr19:45905098:G:A	rs11669683	G	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr19	46126347	46126348	chr19:46126348:A:G	rs761970974	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr19	46383191	46383192	chr19:46383192:C:T	rs149374721	C	T	C	Sox1_MA0870.1	2	1	+	2.9505010645371	-3.9582537147781194	AACAATCGCAATGCT
chr19	46403809	46403810	chr19:46403810:A:C	rs12459327	A	C	A	Sox1_MA0870.1	29	0	+	0	0	.
chr19	46443475	46443476	chr19:46443476:T:A	rs7259499	T	A	t	Sox1_MA0870.1	3	1	-	4.6635090187517045	-0.8507862873256317	TATAATATGATTGTT
chr19	46473819	46473820	chr19:46473820:C:T	rs189464510	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr19	46661454	46661455	chr19:46661455:G:A	rs150695561	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr19	46661462	46661463	chr19:46661463:G:C	rs182541418	G	C	G	Sox1_MA0870.1	27	0	+	0	0	.
chr19	46661719	46661720	chr19:46661720:T:A	chr19:46661720:T:A	T	A	T	Sox1_MA0870.1	17	0	-	0	0	.
chr19	46661721	46661722	chr19:46661722:C:T	chr19:46661722:C:T	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr19	46661728	46661729	chr19:46661729:G:A	rs314667	G	A	A	Sox1_MA0870.1	8	1	-	5.809436143722869	1.6278265970855856	AACAATTTCATCGGA
chr19	46661745	46661746	chr19:46661746:G:C	rs1426067200	G	C	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr19	46729280	46729281	chr19:46729281:C:T	rs151333260	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr19	47241680	47241681	chr19:47241681:T:C	rs35611177	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr19	47281391	47281392	chr19:47281392:T:C	rs8107528	T	C	t	Sox1_MA0870.1	-13	0	+	0	0	.
chr19	47337024	47337025	chr19:47337025:T:G	rs7252458	T	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr19	47600398	47600399	chr19:47600399:T:C	chr19:47600399:T:C	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr19	47662366	47662367	chr19:47662367:G:A	rs2334284	G	A	G	Sox1_MA0870.1	2	1	-	3.9772312424448173	-2.931523536870403	CACACTTCCAGTCTT
chr19	47723324	47723325	chr19:47723325:A:T	rs3112493	A	T	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr19	47728988	47728989	chr19:47728989:C:T	rs11672818	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr19	47762968	47762969	chr19:47762969:T:C	rs4801732	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr19	47779237	47779238	chr19:47779238:C:T	rs10412896	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr19	47863895	47863896	chr19:47863896:C:T	rs138761757	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr19	48011010	48011011	chr19:48011011:C:T	rs62129070	C	T	t	Sox1_MA0870.1	24	0	-	0	0	.
chr19	48137549	48137550	chr19:48137550:C:T	rs4987068	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr19	48186310	48186311	chr19:48186311:G:T	rs1987664	G	T	g	Sox1_MA0870.1	-14	0	-	0	0	.
chr19	48250174	48250175	chr19:48250175:A:C	rs7248574	A	C	A	Sox1_MA0870.1	18	0	-	0	0	.
chr19	48255448	48255449	chr19:48255449:G:A	rs9676777	G	A	G	Sox1_MA0870.1	4	1	+	3.8915914478184783	10.669169701988668	TACAGTTACAGTGTA
chr19	48351477	48351478	chr19:48351478:A:G	rs951788307	A	G	A	Sox1_MA0870.1	4	1	+	3.0720508702318736	-3.705527383938314	AGCAATTCCAGTCTT
chr19	48573864	48573865	chr19:48573865:C:G	rs3760805	C	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr19	48703727	48703728	chr19:48703728:G:A	rs602662	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr19	48836092	48836093	chr19:48836093:G:T	rs567105339	G	T	G	Sox1_MA0870.1	8	1	-	4.451793175004468	-1.4413764793137447	TACAAAACCAGTGGT
chr19	48873149	48873150	chr19:48873150:T:A	rs73589816	T	A	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr19	49012105	49012106	chr19:49012106:G:A	rs78537284	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr19	49021036	49021037	chr19:49021037:C:G	rs143151537	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr19	49223379	49223380	chr19:49223380:G:A	rs7254520	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr19	49363387	49363388	chr19:49363388:A:G	rs67370729	A	G	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr19	49491212	49491213	chr19:49491213:T:A	rs59192944	T	A	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr19	49491218	49491219	chr19:49491219:T:C	rs56974957	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr19	49503284	49503285	chr19:49503285:G:A	rs80186369	G	A	g	Sox1_MA0870.1	4	1	-	7.229777407129674	2.409012087584702	CACACGAGCATTGTT
chr19	49641831	49641832	chr19:49641832:C:A	rs760890135	C	A	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr19	49897758	49897759	chr19:49897759:G:T	rs754596118	G	T	G	Sox1_MA0870.1	27	0	+	0	0	.
chr19	50350094	50350095	chr19:50350095:T:C	rs7248968	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr19	50380842	50380843	chr19:50380843:C:G	rs117287316	C	G	C	Sox1_MA0870.1	12	1	-	5.161619824783206	-1.7471349545320138	GACCCTGGCAGTGTT
chr19	50461513	50461514	chr19:50461514:G:A	rs762197835	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr19	50461553	50461554	chr19:50461554:G:A	rs150831357	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr19	50461553	50461554	chr19:50461554:G:C	chr19:50461554:G:C	G	C	G	Sox1_MA0870.1	20	0	+	0	0	.
chr19	50655205	50655206	chr19:50655206:G:A	rs61331854	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr19	50690573	50690574	chr19:50690574:C:T	rs117782662	C	T	C	Sox1_MA0870.1	2	1	+	6.525635344481205	-0.38311943483401545	CACAATCCCAGTGTA
chr19	50792763	50792764	chr19:50792764:C:T	rs67367861	C	T	t	Sox1_MA0870.1	-16	0	-	0	0	.
chr19	50831098	50831099	chr19:50831099:T:C	rs2560935	T	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr19	50841226	50841227	chr19:50841227:C:T	rs34575650	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr19	51155573	51155574	chr19:51155574:G:A	rs273664	G	A	G	Sox1_MA0870.1	11	1	-	3.890410329424874	8.845805315235207	TTCAATGGCATCGTG
chr19	51177304	51177305	chr19:51177305:A:G	rs776045821	A	G	a	Sox1_MA0870.1	-8	0	-	0	0	.
chr19	51184675	51184676	chr19:51184676:C:T	rs10422661	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr19	51184867	51184868	chr19:51184868:A:G	rs184676100	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr19	51377086	51377087	chr19:51377087:T:G	rs12983461	T	G	t	Sox1_MA0870.1	2	1	-	2.9000761436584273	9.808830922973646	AAAACTGACAGTGCT
chr19	51393950	51393951	chr19:51393951:A:G	rs12327847	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr19	51586552	51586553	chr19:51586553:T:C	rs10439118	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr19	51594351	51594352	chr19:51594352:A:C	rs151128593	A	C	A	Sox1_MA0870.1	31	0	-	0	0	.
chr19	51798406	51798407	chr19:51798407:A:G	rs2902888	A	G	G	Sox1_MA0870.1	20	0	+	0	0	.
chr19	51821840	51821841	chr19:51821841:G:C	rs763782	G	C	G	Sox1_MA0870.1	24	0	-	0	0	.
chr19	51926931	51926932	chr19:51926932:A:G	rs78209709	A	G	A	Sox1_MA0870.1	6	1	+	3.51627780675902	1.9776711136183023	AACAATATCCTCGTA
chr19	51926950	51926951	chr19:51926951:C:T	rs117706567	C	T	T	Sox1_MA0870.1	25	0	+	0	0	.
chr19	51926954	51926955	chr19:51926955:C:G	rs778454524	C	G	C	Sox1_MA0870.1	29	0	+	0	0	.
chr19	52028817	52028818	chr19:52028818:G:A	rs141676394	G	A	G	Sox1_MA0870.1	4	1	-	7.253918886696082	2.43315356715111	AACACTTTCAGTGAC
chr19	52184509	52184510	chr19:52184510:C:T	rs1984750	C	T	T	Sox1_MA0870.1	30	0	-	0	0	.
chr19	52521729	52521730	chr19:52521730:C:G	rs4802968	C	G	N	Sox1_MA0870.1	23	0	-	0	0	.
chr19	52535752	52535753	chr19:52535753:T:A	rs145003278	T	A	t	Sox1_MA0870.1	-11	0	+	0	0	.
chr19	52601063	52601064	chr19:52601064:C:T	rs10426862	C	T	c	Sox1_MA0870.1	-7	0	+	0	0	.
chr19	52729600	52729601	chr19:52729601:G:C	rs1971063	G	C	g	Sox1_MA0870.1	-16	0	+	0	0	.
chr19	52735277	52735278	chr19:52735278:T:C	rs905659949	T	C	t	Sox1_MA0870.1	-19	0	+	0	0	.
chr19	52735756	52735757	chr19:52735757:C:G	rs8112235	C	G	c	Sox1_MA0870.1	0	1	-	11.265720664884377	11.371546459136148	GACAATTACAGTGTA
chr19	52762122	52762123	chr19:52762123:T:G	rs12460833	T	G	t	Sox1_MA0870.1	-7	0	-	0	0	.
chr19	52898506	52898507	chr19:52898507:A:G	rs11881877	A	G	a	Sox1_MA0870.1	11	1	-	4.8178077162392166	-0.137587269571117	TACAATGTCAATGCT
chr19	53041836	53041837	chr19:53041837:A:G	rs4801947	A	G	a	Sox1_MA0870.1	-16	0	-	0	0	.
chr19	53223721	53223722	chr19:53223722:C:T	rs10425196	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr19	53264316	53264317	chr19:53264317:C:T	rs2965265	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr19	53365475	53365476	chr19:53365476:G:T	rs188600887	G	T	g	Sox1_MA0870.1	12	1	+	3.656585177825655	-3.252169601489565	GACAATTCCAGGGCT
chr19	53394933	53394934	chr19:53394934:T:C	rs11669821	T	C	t	Sox1_MA0870.1	24	0	+	0	0	.
chr19	53420645	53420646	chr19:53420646:T:G	rs138148756	T	G	t	Sox1_MA0870.1	-20	0	+	0	0	.
chr19	53518096	53518097	chr19:53518097:G:A	rs12984309	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr19	53572335	53572336	chr19:53572336:A:G	rs16985046	A	G	A	Sox1_MA0870.1	5	1	-	7.095401870193363	0.19223711154560352	ATTAATATCATTGTT
chr19	53785591	53785592	chr19:53785592:C:G	rs3848580	C	G	c	Sox1_MA0870.1	33	0	+	0	0	.
chr19	53795321	53795322	chr19:53795322:C:T	rs10418264	C	T	T	Sox1_MA0870.1	24	0	-	0	0	.
chr19	53842506	53842507	chr19:53842507:A:T	rs142919166	A	T	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr19	53977701	53977702	chr19:53977702:T:C	rs58051381	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr19	53977712	53977713	chr19:53977713:T:A	rs116630514	T	A	T	Sox1_MA0870.1	6	1	+	4.1655402198538445	5.138588935568146	ATCACTTTCCTTGTT
chr19	54025675	54025676	chr19:54025676:C:G	rs2619223	C	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr19	54173408	54173409	chr19:54173409:C:G	rs653560	C	G	C	Sox1_MA0870.1	12	1	-	2.8509413204229594	-4.057813458892261	CACAAAGGCATCGTG
chr19	54235741	54235742	chr19:54235742:A:T	rs7359911	A	T	N	Sox1_MA0870.1	5	1	-	5.181284753099305	0.16215473978877093	CACACTGGGATTGGT
chr19	54235746	54235747	chr19:54235747:G:C	rs7359913	G	C	g	Sox1_MA0870.1	0	1	-	5.181284753099305	5.075458958847532	CACACTGGGATTGGT
chr19	54299453	54299454	chr19:54299454:C:T	rs114255869	C	T	c	Sox1_MA0870.1	-11	0	-	0	0	.
chr19	54409008	54409009	chr19:54409009:T:C	rs8104551	T	C	t	Sox1_MA0870.1	11	1	+	3.487846503281694	-1.46754848252864	AACACTTCCCGTGTG
chr19	54436834	54436835	chr19:54436835:G:T	rs76547941	G	T	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr19	54491872	54491873	chr19:54491873:G:A	rs8111398	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr19	54742313	54742314	chr19:54742314:A:C	rs35927204	A	C	.	Sox1_MA0870.1	-7	0	-	0	0	.
chr19	54881189	54881190	chr19:54881190:A:G	rs7259090	A	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr19	54907099	54907100	chr19:54907100:C:T	rs1433097	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr19	55121674	55121675	chr19:55121675:C:T	rs890869	C	T	T	Sox1_MA0870.1	10	1	+	4.862145403760966	11.6708424878973	CTCAATGACACTGTT
chr19	55386448	55386449	chr19:55386449:C:T	rs75217637	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr19	55690718	55690719	chr19:55690719:T:C	rs182311842	T	C	t	Sox1_MA0870.1	0	1	-	7.237118513313427	5.894995370506676	ACCAATAGCAGTGCA
chr19	55857308	55857309	chr19:55857309:T:G	rs12977263	T	G	-	Sox1_MA0870.1	22	0	-	0	0	.
chr19	56076510	56076511	chr19:56076511:T:C	rs116394781	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr19	56132500	56132501	chr19:56132501:G:T	rs189447122	G	T	G	Sox1_MA0870.1	13	1	+	3.4005960705354084	7.0431437971724815	CTCACTGCCAGTGGT
chr19	56187129	56187130	chr19:56187130:T:C	rs4488567	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr19	56187177	56187178	chr19:56187178:A:G	rs11084425	A	G	A	Sox1_MA0870.1	3	1	+	4.044726916611791	-2.855862750585437	TAGACTTACATTGTA
chr19	56223108	56223109	chr19:56223109:G:C	rs2011848	G	C	g	Sox1_MA0870.1	-14	0	-	0	0	.
chr19	56243349	56243350	chr19:56243350:C:G	rs8110429	C	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr19	56314125	56314126	chr19:56314126:A:G	rs144128942	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr19	56314150	56314151	chr19:56314151:G:T	rs79047208	G	T	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr19	56538760	56538761	chr19:56538761:A:T	rs181536369	A	T	a	Sox1_MA0870.1	-18	0	-	0	0	.
chr19	56596860	56596861	chr19:56596861:G:A	rs1548865	G	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr19	56713021	56713022	chr19:56713022:C:A	rs730845	C	A	C	Sox1_MA0870.1	2	1	+	5.682566249921717	-1.2261885293935033	GACCCTTTCAGTGTT
chr19	56719206	56719207	chr19:56719207:A:G	rs11671183	A	G	g	Sox1_MA0870.1	9	1	+	1.8910901971373217	-5.017664582177897	GACACTGGCATTACC
chr19	56956121	56956122	chr19:56956122:C:A	rs754622	C	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr19	56975044	56975045	chr19:56975045:A:G	rs10418076	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr19	56983514	56983515	chr19:56983515:G:T	rs73936731	G	T	G	Sox1_MA0870.1	12	1	+	7.676013009064414	0.767258229749193	CACAATAGCATGGTC
chr19	57059032	57059033	chr19:57059033:G:A	rs73622130	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr19	57270282	57270283	chr19:57270283:C:G	rs55836057	C	G	C	Sox1_MA0870.1	7	1	+	3.41222618488431	3.445008684623843	GTCAGTTCCATTGTC
chr19	57279244	57279245	chr19:57279245:G:A	rs7247503	G	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr19	57334406	57334407	chr19:57334407:T:C	rs7250886	T	C	C	Sox1_MA0870.1	9	1	-	8.630280664062894	1.721525884747674	GACAGTTACATTGTT
chr19	57642583	57642584	chr19:57642584:G:C	rs3746212	G	C	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr19	57847175	57847176	chr19:57847176:G:C	rs2007552	G	C	.	Sox1_MA0870.1	-15	0	+	0	0	.
chr19	58099743	58099744	chr19:58099744:A:G	rs7507609	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr19	58282187	58282188	chr19:58282188:G:A	rs7253055	G	A	A	Sox1_MA0870.1	7	1	-	4.253493221679099	4.2416641691307255	TACACCACCAGTGTT
chr19	58312796	58312797	chr19:58312797:T:C	rs8110941	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr19	58330572	58330573	chr19:58330573:T:C	rs60348321	T	C	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr19	58330573	58330574	chr19:58330574:C:T	rs59119314	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	19955	19956	chr2:19956:T:C	rs62114728	T	C	.	Sox1_MA0870.1	11	1	+	3.5251744068981514	-1.430220578912183	GACAATGCCACTGCA
chr2	19968	19969	chr2:19969:T:C	rs73138552	T	C	.	Sox1_MA0870.1	24	0	+	0	0	.
chr2	305740	305741	chr2:305741:G:C	rs76056051	G	C	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	306289	306290	chr2:306290:A:G	rs146877190	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	597001	597002	chr2:597002:G:A	rs17042073	G	A	A	Sox1_MA0870.1	2	1	-	3.9697751980911518	-2.938979581224069	ACCACTCGCAGTGTT
chr2	618359	618360	chr2:618360:A:C	rs7575831	A	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	618360	618361	chr2:618361:G:A	rs7560005	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	646144	646145	chr2:646145:T:C	rs11127491	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	646158	646159	chr2:646159:G:A	rs35941143	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	646673	646674	chr2:646674:T:C	rs10190052	T	C	t	Sox1_MA0870.1	11	1	+	7.460908254036786	2.5055132682264527	CACAAGAGCATTGTG
chr2	667173	667174	chr2:667174:G:T	rs2966398	G	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	905925	905926	chr2:905926:A:T	rs12993793	A	T	A	Sox1_MA0870.1	9	1	+	5.13255680898766	-1.7761979703275612	GTCACTGGCATTGCA
chr2	949239	949240	chr2:949240:G:A	rs75411887	G	A	-	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	1423014	1423015	chr2:1423015:G:A	rs2276701	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	1487346	1487347	chr2:1487347:T:C	rs116600855	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr2	1538886	1538887	chr2:1538887:T:C	rs138956821	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	1567610	1567611	chr2:1567611:G:A	rs72776302	G	A	A	Sox1_MA0870.1	12	1	+	6.298737250266431	-0.6100175290487894	AACAATTACACTGGT
chr2	1592028	1592029	chr2:1592029:G:A	rs192892779	G	A	G	Sox1_MA0870.1	12	1	+	6.734222988377471	-0.17453179093774895	AACAAGAGCATTGCC
chr2	1843295	1843296	chr2:1843296:G:T	rs28718187	G	T	G	Sox1_MA0870.1	6	1	+	4.657270409575305	5.222828387001723	AACCATGCGAGTGTT
chr2	1947610	1947611	chr2:1947611:G:A	rs13005827	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	1947616	1947617	chr2:1947617:G:A	rs11678039	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	1947651	1947652	chr2:1947652:G:A	rs114698911	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr2	1954440	1954441	chr2:1954441:G:T	rs12994185	G	T	G	Sox1_MA0870.1	21	0	+	0	0	.
chr2	1964261	1964262	chr2:1964262:T:C	rs34160110	T	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	2010665	2010666	chr2:2010666:T:G	rs73190457	T	G	T	Sox1_MA0870.1	18	0	-	0	0	.
chr2	2464243	2464244	chr2:2464244:T:A	rs4853802	T	A	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	2505677	2505678	chr2:2505678:G:A	rs34537222	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr2	2560418	2560419	chr2:2560419:T:C	rs58665662	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr2	2601984	2601985	chr2:2601985:G:T	rs7556672	G	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr2	2664553	2664554	chr2:2664554:G:A	rs72773097	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr2	2709403	2709404	chr2:2709404:C:T	rs75540055	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	2733414	2733415	chr2:2733415:T:C	rs35585920	T	C	T	Sox1_MA0870.1	11	1	+	4.598211016367529	-0.3571839694428044	CGCACTTTCAGTGCT
chr2	2808243	2808244	chr2:2808244:C:T	rs2385327	C	T	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	3099543	3099544	chr2:3099544:T:C	rs7578259	T	C	T	Sox1_MA0870.1	5	1	+	7.724588958668393	0.8214242000206334	AACAATTGCATGGTG
chr2	3214751	3214752	chr2:3214752:T:C	rs79267640	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	3303012	3303013	chr2:3303013:A:C	rs143241056	A	C	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	3333096	3333097	chr2:3333097:A:C	rs7599847	A	C	C	Sox1_MA0870.1	7	1	+	5.141201072221988	4.711440244685946	AACACTGACATTCCT
chr2	3539432	3539433	chr2:3539433:T:C	rs6730885	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	3642987	3642988	chr2:3642988:G:A	rs116732359	G	A	G	Sox1_MA0870.1	7	1	-	3.616387212814732	3.604558160266359	GGCCATTCCATTGCT
chr2	3834586	3834587	chr2:3834587:A:G	rs2034730	A	G	A	Sox1_MA0870.1	9	1	+	5.698114786414077	-1.210639992901144	GTCACTTGCATTGCA
chr2	3874317	3874318	chr2:3874318:A:T	rs2219111	A	T	A	Sox1_MA0870.1	9	1	+	7.498624076855054	0.589869297539833	AATAATTTCATTGTA
chr2	4067200	4067201	chr2:4067201:C:T	rs62109009	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	4139677	4139678	chr2:4139678:A:G	rs17316964	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	4281787	4281788	chr2:4281788:G:A	rs6760082	G	A	A	Sox1_MA0870.1	16	0	-	0	0	.
chr2	4803641	4803642	chr2:4803642:G:T	rs7601402	G	T	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	4903523	4903524	chr2:4903524:T:C	rs13429442	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	4903529	4903530	chr2:4903530:G:T	rs17020193	G	T	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	5264620	5264621	chr2:5264621:G:C	rs531472236	G	C	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	5333080	5333081	chr2:5333081:G:A	rs57403098	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	5593298	5593299	chr2:5593299:C:A	rs17363613	C	A	C	Sox1_MA0870.1	15	0	+	0	0	.
chr2	5850118	5850119	chr2:5850119:G:C	rs9679218	G	C	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	5954682	5954683	chr2:5954683:A:G	rs56211642	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	6008650	6008651	chr2:6008651:C:A	rs2693838	C	A	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	6249816	6249817	chr2:6249817:C:T	rs72772327	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	6572417	6572418	chr2:6572418:T:G	rs10186870	T	G	T	Sox1_MA0870.1	26	0	-	0	0	.
chr2	6572423	6572424	chr2:6572424:A:G	rs35660926	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr2	6658364	6658365	chr2:6658365:T:G	rs2169321	T	G	T	Sox1_MA0870.1	27	0	+	0	0	.
chr2	7027021	7027022	chr2:7027022:C:G	rs416416	C	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr2	7071417	7071418	chr2:7071418:G:C	rs309301	G	C	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	7078010	7078011	chr2:7078011:A:G	rs544630836	A	G	A	Sox1_MA0870.1	1	1	+	7.2527945172302095	3.1545038618370684	CACAACACCATTGTA
chr2	7266233	7266234	chr2:7266234:C:T	rs768447	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr2	7420115	7420116	chr2:7420116:A:T	rs16866222	A	T	A	Sox1_MA0870.1	26	0	+	0	0	.
chr2	7473224	7473225	chr2:7473225:A:T	rs12475712	A	T	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	7693129	7693130	chr2:7693130:C:T	rs11676467	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr2	7735619	7735620	chr2:7735620:T:C	rs116637960	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	7764092	7764093	chr2:7764093:T:C	rs6742152	T	C	t	Sox1_MA0870.1	25	0	+	0	0	.
chr2	7814109	7814110	chr2:7814110:G:A	rs117456472	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr2	7814118	7814119	chr2:7814119:C:T	rs114413075	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr2	7814133	7814134	chr2:7814134:T:C	rs79618057	T	C	T	Sox1_MA0870.1	3	1	-	5.658820286040349	-1.241769381156875	CACACTGCCATAGTT
chr2	7932484	7932485	chr2:7932485:C:T	rs10164413	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr2	8209714	8209715	chr2:8209715:G:A	rs6431930	G	A	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	8311570	8311571	chr2:8311571:T:C	rs13398375	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	8416488	8416489	chr2:8416489:C:T	rs11695254	C	T	C	Sox1_MA0870.1	13	1	+	3.3969855577364907	5.574640855187486	GACCATGCCAGTGCC
chr2	8419049	8419050	chr2:8419050:G:A	rs1017920	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr2	8447712	8447713	chr2:8447713:G:A	rs146424500	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	8465000	8465001	chr2:8465001:G:A	rs1875812	G	A	G	Sox1_MA0870.1	14	1	+	8.720100799134348	8.544769562067305	CACACTATCATTGGG
chr2	9307093	9307094	chr2:9307094:C:T	rs145131887	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr2	9307105	9307106	chr2:9307106:C:T	rs12478982	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	9371104	9371105	chr2:9371105:A:G	rs73150907	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	9388096	9388097	chr2:9388097:C:T	rs4560084	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr2	9400785	9400786	chr2:9400786:A:G	rs41264169	A	G	A	Sox1_MA0870.1	5	1	-	5.354603329690481	-1.5485614289572787	GACCATAGCATTGGA
chr2	9405900	9405901	chr2:9405901:C:T	rs10593	C	T	c	Sox1_MA0870.1	4	1	-	5.718181127510833	12.49575938168102	AACAGTGACATTGCC
chr2	9992835	9992836	chr2:9992836:G:C	rs28444564	G	C	G	Sox1_MA0870.1	19	0	-	0	0	.
chr2	10072564	10072565	chr2:10072565:C:T	rs6756059	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr2	10184473	10184474	chr2:10184474:C:T	rs7608099	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	10221037	10221038	chr2:10221038:A:G	rs73917409	A	G	A	Sox1_MA0870.1	10	1	-	4.669204348748759	-2.1394927353875732	TCCACTCACATTGTT
chr2	10274589	10274590	chr2:10274590:C:T	rs72771647	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr2	10274596	10274597	chr2:10274597:G:A	rs6710746	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr2	10298494	10298495	chr2:10298495:C:A	rs4668676	C	A	A	Sox1_MA0870.1	20	0	-	0	0	.
chr2	10312018	10312019	chr2:10312019:G:A	rs56158659	G	A	A	Sox1_MA0870.1	2	1	-	3.8936670115974397	-3.015087767717782	GACGATAACAGTGAT
chr2	10377350	10377351	chr2:10377351:C:G	rs12466783	C	G	C	Sox1_MA0870.1	18	0	+	0	0	.
chr2	10377366	10377367	chr2:10377367:A:G	rs12692405	A	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr2	10494089	10494090	chr2:10494090:G:A	rs116442483	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	10530842	10530843	chr2:10530843:C:T	rs1728159	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	10768194	10768195	chr2:10768195:C:T	rs74475873	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	10779800	10779801	chr2:10779801:C:T	rs74862599	C	T	C	Sox1_MA0870.1	11	1	+	5.090321002596863	10.045715988407197	AACACTGCCAGCGTC
chr2	10792080	10792081	chr2:10792081:C:A	rs1734422	C	A	C	Sox1_MA0870.1	18	0	-	0	0	.
chr2	10814889	10814890	chr2:10814890:C:A	rs866688410	C	A	C	Sox1_MA0870.1	4	1	+	6.6317633424012215	8.588576277026437	CACACTGCCAGTGCC
chr2	10823686	10823687	chr2:10823687:A:G	rs115983125	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr2	10901516	10901517	chr2:10901517:T:C	rs13400660	T	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr2	10904144	10904145	chr2:10904145:T:A	rs111399441	T	A	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	10932865	10932866	chr2:10932866:G:A	rs1453088	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	10990706	10990707	chr2:10990707:G:T	rs62119123	G	T	G	Sox1_MA0870.1	2	1	-	3.723653714814041	-3.185101064501178	CACCCTGCCAGTGTC
chr2	11011325	11011326	chr2:11011326:C:T	rs13022057	C	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr2	11124555	11124556	chr2:11124556:G:A	rs114195839	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	11140882	11140883	chr2:11140883:G:A	rs76773051	G	A	G	Sox1_MA0870.1	6	1	+	5.703568133551153	7.242174826691871	GACAATGAGATTGGG
chr2	11156199	11156200	chr2:11156200:G:T	rs138521026	G	T	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	11213453	11213454	chr2:11213454:C:A	rs147818806	C	A	C	Sox1_MA0870.1	29	0	+	0	0	.
chr2	11345605	11345606	chr2:11345606:C:G	rs1400508478	C	G	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	11466789	11466790	chr2:11466790:A:G	rs80057977	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	11556679	11556680	chr2:11556680:C:T	rs16857629	C	T	C	Sox1_MA0870.1	11	1	+	5.057320784831219	10.012715770641552	CACAATTCCATCGAG
chr2	11595910	11595911	chr2:11595911:A:G	rs11679686	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	11697602	11697603	chr2:11697603:G:A	rs116104640	G	A	G	Sox1_MA0870.1	7	1	-	3.322367564942949	3.310538512394576	GTCACTACCAGTGGC
chr2	11809330	11809331	chr2:11809331:G:C	rs59208217	G	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr2	11825215	11825216	chr2:11825216:G:A	rs74564998	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr2	11938299	11938300	chr2:11938300:C:T	rs6742751	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	11984520	11984521	chr2:11984521:G:T	rs60261717	G	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	12097292	12097293	chr2:12097293:G:A	rs12478548	G	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr2	12320418	12320419	chr2:12320419:G:T	rs10495598	G	T	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	12458270	12458271	chr2:12458271:T:C	rs6432294	T	C	T	Sox1_MA0870.1	11	1	+	4.077882085685707	-0.8775129001246263	AGCAATAGCAGTTTT
chr2	12516151	12516152	chr2:12516152:G:A	rs62126677	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr2	12790819	12790820	chr2:12790820:C:T	rs78088565	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	12812066	12812067	chr2:12812067:A:G	rs7597914	A	G	G	Sox1_MA0870.1	20	0	+	0	0	.
chr2	12857876	12857877	chr2:12857877:A:T	rs62124477	A	T	A	Sox1_MA0870.1	34	0	+	0	0	.
chr2	13079556	13079557	chr2:13079557:A:G	rs11683803	A	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	13208027	13208028	chr2:13208028:T:A	rs144526959	T	A	T	Sox1_MA0870.1	5	1	+	4.65613578165938	-0.36299423165115485	TACCCTAGCATTGCC
chr2	13415310	13415311	chr2:13415311:A:G	rs73916274	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	13523923	13523924	chr2:13523924:A:G	rs57752576	A	G	A	Sox1_MA0870.1	13	1	-	4.035991454222632	1.8583361567716374	ACCAGTTTCATTGTG
chr2	14134806	14134807	chr2:14134807:A:G	rs13404282	A	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr2	14475198	14475199	chr2:14475199:A:C	rs6757636	A	C	A	Sox1_MA0870.1	14	1	-	3.573735427934266	1.848053340216162	CCCAATAACAGAGTT
chr2	14537058	14537059	chr2:14537059:T:C	rs10172660	T	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	14537059	14537060	chr2:14537060:C:T	rs186152584	C	T	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	14543150	14543151	chr2:14543151:C:T	rs2675889	C	T	T	Sox1_MA0870.1	7	1	-	3.475813865573366	3.872792193369875	GACACTAGCATTTGT
chr2	14573029	14573030	chr2:14573030:T:C	rs13412374	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	15039253	15039254	chr2:15039254:G:A	rs10176893	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	15182452	15182453	chr2:15182453:G:A	rs6730450	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	15260452	15260453	chr2:15260453:A:G	rs6711181	A	G	A	Sox1_MA0870.1	11	1	-	4.02887182100901	-0.9265231648013238	CACACTTTCTTTGCT
chr2	15458336	15458337	chr2:15458337:T:G	rs7593184	T	G	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	15521690	15521691	chr2:15521691:G:C	rs4668917	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr2	15591458	15591459	chr2:15591459:C:T	rs3755133	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	15591480	15591481	chr2:15591481:C:T	rs4668936	C	T	C	Sox1_MA0870.1	4	1	+	5.674503498838503	0.8537381792935314	CTCACTGGCATTGGT
chr2	15818348	15818349	chr2:15818349:A:G	rs565412147	A	G	A	Sox1_MA0870.1	10	1	-	7.877550802675804	1.0688537185394713	ATCAATTTCATTGGC
chr2	15953996	15953997	chr2:15953997:T:C	rs6431741	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr2	15954018	15954019	chr2:15954019:A:G	rs6431742	A	G	A	Sox1_MA0870.1	5	1	-	4.234181264255836	-2.668983494391923	CACTATTGCATTGGG
chr2	16004488	16004489	chr2:16004489:T:C	rs55761643	T	C	C	Sox1_MA0870.1	14	1	+	3.656585177825655	2.14557577334425	GACAATTCCAGGGCT
chr2	16017681	16017682	chr2:16017682:C:T	rs12472778	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	16130024	16130025	chr2:16130025:T:A	rs141026745	T	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	16553609	16553610	chr2:16553610:G:A	rs62122693	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr2	16731063	16731064	chr2:16731064:C:T	rs191008053	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	16747387	16747388	chr2:16747388:C:A	rs1722409	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr2	16755562	16755563	chr2:16755563:G:C	rs997919164	G	C	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	16764100	16764101	chr2:16764101:T:C	rs73215733	T	C	C	Sox1_MA0870.1	0	1	-	4.031864427650921	2.689741284844167	AACATTTGCATTGGA
chr2	17031753	17031754	chr2:17031754:C:G	rs72610769	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr2	17429399	17429400	chr2:17429400:A:G	rs1401706	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr2	17592878	17592879	chr2:17592879:C:T	rs1033300	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr2	17592885	17592886	chr2:17592886:G:A	rs1033299	G	A	A	Sox1_MA0870.1	8	1	-	6.405904242845622	2.22429469620834	AACAATACCACTGCA
chr2	18023631	18023632	chr2:18023632:C:A	rs2709990	C	A	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	18023671	18023672	chr2:18023672:T:C	rs2732924	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	19130764	19130765	chr2:19130765:A:G	rs140706629	A	G	A	Sox1_MA0870.1	11	1	-	4.578238443822204	-0.37715654198813	GTCCATGACATTGTA
chr2	19256740	19256741	chr2:19256741:A:G	rs851385	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	19625858	19625859	chr2:19625859:C:T	rs1453186	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	19670381	19670382	chr2:19670382:T:C	rs17619443	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	19726750	19726751	chr2:19726751:T:C	rs4666548	T	C	T	Sox1_MA0870.1	4	1	-	3.7843042905319026	-2.9932739636382855	CCCAATGACAGTGGC
chr2	19861689	19861690	chr2:19861690:G:A	rs558255202	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	19877027	19877028	chr2:19877028:A:G	rs6531201	A	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr2	19912151	19912152	chr2:19912152:T:C	rs10197681	T	C	T	Sox1_MA0870.1	5	1	+	11.5864188078629	4.68325404921514	TACACTAACAGTGTT
chr2	20020577	20020578	chr2:20020578:G:A	rs1191805	G	A	A	Sox1_MA0870.1	12	1	+	5.616761653269734	-1.291993126045487	CACAAGAACAGTGTG
chr2	20071960	20071961	chr2:20071961:A:C	rs58038588	A	C	A	Sox1_MA0870.1	32	0	+	0	0	.
chr2	20163904	20163905	chr2:20163905:C:T	rs35135293	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	20193288	20193289	chr2:20193289:A:G	rs74591651	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	20200002	20200003	chr2:20200003:A:T	rs4666374	A	T	A	Sox1_MA0870.1	17	0	-	0	0	.
chr2	20209997	20209998	chr2:20209998:A:G	rs3771249	A	G	A	Sox1_MA0870.1	9	1	+	7.3077791751899905	0.39902439587476934	ATCACTGACATTGGT
chr2	20216653	20216654	chr2:20216654:C:T	rs114985383	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr2	20245877	20245878	chr2:20245878:T:C	rs2110410	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	20352363	20352364	chr2:20352364:C:T	rs73218122	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	20393036	20393037	chr2:20393037:G:A	rs343155	G	A	G	Sox1_MA0870.1	14	1	+	5.61324589349303	5.437914656425986	GACAATATTAGTGCG
chr2	20401046	20401047	chr2:20401047:G:C	rs343145	G	C	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	20422592	20422593	chr2:20422593:C:A	rs56330859	C	A	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	20453005	20453006	chr2:20453006:A:G	rs963889617	A	G	A	Sox1_MA0870.1	4	1	+	5.370427247251609	-1.4071510069185793	GACTATAAGATTGTG
chr2	20492064	20492065	chr2:20492065:C:T	rs10445844	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	20579869	20579870	chr2:20579870:C:T	rs17718362	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	20624542	20624543	chr2:20624543:G:A	rs77454156	G	A	G	Sox1_MA0870.1	10	1	+	3.5810008497674475	-0.9865713058053259	CACACAAACAGTGCC
chr2	20625845	20625846	chr2:20625846:A:T	chr2:20625846:A:T	A	T	A	Sox1_MA0870.1	27	0	-	0	0	.
chr2	20727829	20727830	chr2:20727830:T:C	rs4971544	T	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	20852967	20852968	chr2:20852968:T:C	rs4246577	T	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	20983310	20983311	chr2:20983311:T:G	rs6754295	T	G	T	Sox1_MA0870.1	13	1	+	5.440722438323466	1.7981747116863924	GTCACTGGGATTGTT
chr2	21118016	21118017	chr2:21118017:T:C	rs74957119	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	21467941	21467942	chr2:21467942:T:C	rs13424136	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	21782272	21782273	chr2:21782273:G:A	rs11689185	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr2	22692869	22692870	chr2:22692870:G:A	rs367627153	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr2	22802155	22802156	chr2:22802156:G:A	rs13384029	G	A	G	Sox1_MA0870.1	12	1	+	4.483922511535324	-2.4248322677798964	ATCACTGACATCGTC
chr2	23220886	23220887	chr2:23220887:T:A	rs11678560	T	A	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	23273811	23273812	chr2:23273812:G:A	rs56262645	G	A	G	Sox1_MA0870.1	14	1	-	4.7458756475404495	6.256885052021854	CACTATTGCATTGAC
chr2	23285169	23285170	chr2:23285170:C:T	rs34506372	C	T	C	Sox1_MA0870.1	7	1	-	5.903716073926288	6.300694401722797	CTCAATAGCATTATT
chr2	23401485	23401486	chr2:23401486:C:T	rs114040543	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr2	23418083	23418084	chr2:23418084:G:A	rs113321153	G	A	A	Sox1_MA0870.1	11	1	-	5.870967124322624	10.826362110132957	AACACTTACAGCGTG
chr2	23465057	23465058	chr2:23465058:T:C	rs77418123	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	23637345	23637346	chr2:23637346:C:A	rs2288698	C	A	C	Sox1_MA0870.1	7	1	-	10.4233197621008	10.378708209812892	AACAATAGCATGGTT
chr2	23637367	23637368	chr2:23637368:G:A	rs75133321	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	23707108	23707109	chr2:23707109:T:C	rs17045819	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr2	23872927	23872928	chr2:23872928:A:G	rs17038360	A	G	G	Sox1_MA0870.1	3	1	+	5.872556828306595	-1.0280328388906301	CACATTGGCATTGTA
chr2	24012103	24012104	chr2:24012104:T:C	rs2339938	T	C	C	Sox1_MA0870.1	6	1	-	8.59519393701406	7.056587243873342	GTCAATACCATTGCA
chr2	24246545	24246546	chr2:24246546:T:A	rs77561541	T	A	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	24301855	24301856	chr2:24301856:A:G	rs72793213	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	24415386	24415387	chr2:24415387:C:A	rs4581852	C	A	c	Sox1_MA0870.1	13	1	+	5.283307998486747	4.115437269348582	TACAATTTCATTTCT
chr2	24743527	24743528	chr2:24743528:C:T	rs115297889	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr2	24814172	24814173	chr2:24814173:G:A	rs1003064	G	A	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	24859239	24859240	chr2:24859240:G:A	rs76259681	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	25062800	25062801	chr2:25062801:C:T	rs13007686	C	T	C	Sox1_MA0870.1	0	1	-	4.746392597669701	6.0885157404764545	GCCAATGGCAGTGCC
chr2	25087285	25087286	chr2:25087286:G:T	rs512419	G	T	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	25209880	25209881	chr2:25209881:A:G	rs35692468	A	G	A	Sox1_MA0870.1	0	1	+	7.774013009100985	6.431889866294233	AACAATTTCACTGTG
chr2	25474533	25474534	chr2:25474534:A:G	rs6737282	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	25474563	25474564	chr2:25474564:T:C	rs6740340	T	C	T	Sox1_MA0870.1	10	1	+	4.075485988868667	-2.733211095267665	AACAAAAACATAGTG
chr2	25669533	25669534	chr2:25669534:T:G	rs6738958	T	G	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	25850707	25850708	chr2:25850708:G:A	rs13421137	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	26345980	26345981	chr2:26345981:G:A	rs190970827	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr2	26345990	26345991	chr2:26345991:C:T	rs114778983	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	26423212	26423213	chr2:26423213:G:C	rs191048536	G	C	G	Sox1_MA0870.1	30	0	-	0	0	.
chr2	26501856	26501857	chr2:26501857:T:G	rs6547079	T	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	26538350	26538351	chr2:26538351:G:A	rs11687195	G	A	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	26540277	26540278	chr2:26540278:G:A	rs11690336	G	A	G	Sox1_MA0870.1	12	1	+	5.976087904542941	-0.9326668747722802	AACCATTTCATTGAA
chr2	26670383	26670384	chr2:26670384:C:T	rs80271190	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	26686628	26686629	chr2:26686629:G:A	rs75395732	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr2	26686664	26686665	chr2:26686665:T:C	rs367816469	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr2	26772324	26772325	chr2:26772325:G:T	rs10170182	G	T	G	Sox1_MA0870.1	17	0	+	0	0	.
chr2	26942835	26942836	chr2:26942836:G:A	rs370057133	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	27614161	27614162	chr2:27614162:A:G	chr2:27614162:A:G	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	27638750	27638751	chr2:27638751:G:T	rs114940462	G	T	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	27651464	27651465	chr2:27651465:A:C	rs10201652	A	C	C	Sox1_MA0870.1	33	0	-	0	0	.
chr2	27716805	27716806	chr2:27716806:A:G	rs78299693	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr2	28096266	28096267	chr2:28096267:A:G	rs3863	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	28161166	28161167	chr2:28161167:G:T	rs147756373	G	T	G	Sox1_MA0870.1	30	0	-	0	0	.
chr2	28287580	28287581	chr2:28287581:A:G	rs144821775	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	28427638	28427639	chr2:28427639:G:A	rs6731639	G	A	A	Sox1_MA0870.1	30	0	+	0	0	.
chr2	28526713	28526714	chr2:28526714:A:G	rs79869688	A	G	A	Sox1_MA0870.1	10	1	-	8.396886818439825	1.5881897343034899	AGCACTTGCATTGTA
chr2	28623694	28623695	chr2:28623695:A:G	rs7604903	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	28623700	28623701	chr2:28623701:A:G	rs6547863	A	G	G	Sox1_MA0870.1	3	1	+	7.855898972404976	0.9553093052077495	GACACTTTCATTGGC
chr2	28917770	28917771	chr2:28917771:C:G	rs115047758	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr2	28997432	28997433	chr2:28997433:C:T	rs74444058	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	29068022	29068023	chr2:29068023:G:A	rs55861973	G	A	G	Sox1_MA0870.1	8	1	-	6.956449738028554	2.7748401913912706	AACACTAACATTTTA
chr2	29414821	29414822	chr2:29414822:G:A	rs76521269	G	A	G	Sox1_MA0870.1	4	1	-	4.722496828620862	-0.09826849092410783	CTCACAAACATTGTC
chr2	29443320	29443321	chr2:29443321:T:C	rs11678326	T	C	T	Sox1_MA0870.1	10	1	+	5.463974357097466	-1.3447227270388682	AACAGTTCCATTGCA
chr2	29519262	29519263	chr2:29519263:T:A	rs144896399	T	A	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr2	29619547	29619548	chr2:29619548:G:A	rs10865513	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr2	29724368	29724369	chr2:29724369:A:G	rs2541194	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	29803564	29803565	chr2:29803565:G:A	rs73922299	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr2	30185391	30185392	chr2:30185392:G:A	rs115308251	G	A	G	Sox1_MA0870.1	11	1	-	5.912583396945193	10.867978382755528	GGCAATTTCATCGTT
chr2	30208880	30208881	chr2:30208881:T:A	rs4951985	T	A	T	Sox1_MA0870.1	28	0	-	0	0	.
chr2	30287577	30287578	chr2:30287578:T:C	rs6733372	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	30312395	30312396	chr2:30312396:G:A	rs35303420	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	30684324	30684325	chr2:30684325:C:T	rs78361702	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	30761047	30761048	chr2:30761048:C:G	rs581331	C	G	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	30763986	30763987	chr2:30763987:A:G	rs17396613	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	30986605	30986606	chr2:30986606:G:C	rs56102228	G	C	G	Sox1_MA0870.1	2	1	-	6.703916608384488	-0.20483817093073275	CACAATTACATTTTA
chr2	31125523	31125524	chr2:31125524:A:G	rs2216832	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	31171353	31171354	chr2:31171354:G:C	rs9308916	G	C	G	Sox1_MA0870.1	4	1	-	7.111761656451344	2.2909963369063733	GACACTAACAGTGAG
chr2	31231678	31231679	chr2:31231679:C:T	rs605832	C	T	T	Sox1_MA0870.1	14	1	+	3.8539252242209288	5.364934628702334	GACAATGGCATGGCC
chr2	32040154	32040155	chr2:32040155:G:A	chr2:32040155:G:A	G	A	.	Sox1_MA0870.1	16	0	-	0	0	.
chr2	32277917	32277918	chr2:32277918:C:G	rs138302898	C	G	C	Sox1_MA0870.1	0	1	-	4.197482349275086	4.303308143526859	GACCATAACAGTGAC
chr2	32277926	32277927	chr2:32277927:G:T	rs916072489	G	T	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	32628583	32628584	chr2:32628584:A:G	rs113547951	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	32628588	32628589	chr2:32628589:G:A	rs6711579	G	A	A	Sox1_MA0870.1	0	1	+	6.125616124392421	7.467739267199175	GACAATGGCAATGTC
chr2	32796212	32796213	chr2:32796213:A:G	rs3906940	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr2	32812149	32812150	chr2:32812150:G:A	rs927088	G	A	A	Sox1_MA0870.1	4	1	+	5.432523271392093	12.210101525562282	AGCAGTTTCATTGTT
chr2	32812176	32812177	chr2:32812177:C:G	rs927089	C	G	C	Sox1_MA0870.1	31	0	+	0	0	.
chr2	32927010	32927011	chr2:32927011:T:C	rs76617644	T	C	T	Sox1_MA0870.1	10	1	+	6.148908352538484	-0.6597887315978485	GTCAAAGGCATTGTT
chr2	32977444	32977445	chr2:32977445:G:A	rs79599302	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr2	32977447	32977448	chr2:32977448:G:T	rs72791709	G	T	G	Sox1_MA0870.1	28	0	-	0	0	.
chr2	33018361	33018362	chr2:33018362:C:G	rs172662	C	G	G	Sox1_MA0870.1	0	1	+	4.196989877169451	4.09116408291768	CACATTTGCAGTGTA
chr2	33251064	33251065	chr2:33251065:A:G	rs78270585	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr2	33312235	33312236	chr2:33312236:A:T	rs1277992150	A	T	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	33559733	33559734	chr2:33559734:G:A	rs12478742	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	33700761	33700762	chr2:33700762:A:G	rs1868348	A	G	G	Sox1_MA0870.1	33	0	-	0	0	.
chr2	33822029	33822030	chr2:33822030:A:G	rs77075221	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr2	34003823	34003824	chr2:34003824:A:G	rs13032001	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	34210436	34210437	chr2:34210437:C:T	rs150404586	C	T	C	Sox1_MA0870.1	0	1	+	4.383432574214678	3.681055817067198	CACATTGTCATTGAT
chr2	34667233	34667234	chr2:34667234:T:G	rs4670388	T	G	T	Sox1_MA0870.1	6	1	+	6.563943034563476	5.9983850571370585	ATCAATTACCTTGTT
chr2	34667249	34667250	chr2:34667250:A:C	rs1527597	A	C	A	Sox1_MA0870.1	22	0	+	0	0	.
chr2	34726719	34726720	chr2:34726720:G:A	rs62163916	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	35507586	35507587	chr2:35507587:A:G	rs4567910	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr2	35707611	35707612	chr2:35707612:C:T	rs11681221	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	36369519	36369520	chr2:36369520:C:G	rs9308991	C	G	C	Sox1_MA0870.1	14	1	+	8.263081953162214	8.048409269925514	TCCAATAACAGTGTC
chr2	36469401	36469402	chr2:36469402:A:G	rs3770857	A	G	A	Sox1_MA0870.1	0	1	+	4.355594143864957	3.0134710010582038	AGCACTAACAGTGAG
chr2	36525978	36525979	chr2:36525979:T:G	rs3821153	T	G	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	36588883	36588884	chr2:36588884:T:C	rs848611	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	36697519	36697520	chr2:36697520:A:C	rs12989101	A	C	A	Sox1_MA0870.1	9	1	+	4.720200437830385	-2.1885543414848354	TACACTTAAAGTGTT
chr2	36732549	36732550	chr2:36732550:C:T	rs1015697	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr2	36732741	36732742	chr2:36732742:A:G	rs1015695	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr2	36821980	36821981	chr2:36821981:G:C	rs1468809	G	C	G	Sox1_MA0870.1	27	0	+	0	0	.
chr2	37085053	37085054	chr2:37085054:C:G	rs74476475	C	G	C	Sox1_MA0870.1	21	0	+	0	0	.
chr2	37151504	37151505	chr2:37151505:A:G	rs75756910	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	37349708	37349709	chr2:37349709:A:G	rs10196818	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	37377625	37377626	chr2:37377626:G:A	rs4233922	G	A	A	Sox1_MA0870.1	20	0	-	0	0	.
chr2	37415747	37415748	chr2:37415748:T:G	rs4670708	T	G	T	Sox1_MA0870.1	13	1	+	4.343952634295564	0.7014049076584915	CTCCATGACAGTGTT
chr2	37473119	37473120	chr2:37473120:A:G	rs6706731	A	G	G	Sox1_MA0870.1	7	1	+	5.795145984128384	5.398167656331875	AAAAAAAACATTGTT
chr2	37684282	37684283	chr2:37684283:A:G	rs34873654	A	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr2	37684294	37684295	chr2:37684295:G:A	rs35453820	G	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr2	37832629	37832630	chr2:37832630:C:A	rs749795407	C	A	C	Sox1_MA0870.1	7	1	+	3.9141206395615384	4.34388146709758	CTCACTACCCTTGTT
chr2	37912366	37912367	chr2:37912367:G:C	rs78148253	G	C	G	Sox1_MA0870.1	24	0	-	0	0	.
chr2	38095413	38095414	chr2:38095414:A:G	rs151256	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr2	38214840	38214841	chr2:38214841:A:G	rs1871163	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr2	38214885	38214886	chr2:38214886:G:A	rs1871162	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	38218636	38218637	chr2:38218637:C:A	rs10183112	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	38497787	38497788	chr2:38497788:G:A	rs143756552	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr2	38670574	38670575	chr2:38670575:T:G	rs73933118	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	38670611	38670612	chr2:38670612:C:T	rs6736259	C	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr2	38728723	38728724	chr2:38728724:G:A	rs6728394	G	A	g	Sox1_MA0870.1	4	1	+	5.859687597545776	12.637265851715963	AACCGTAACATTGTT
chr2	39180381	39180382	chr2:39180382:G:A	rs7569943	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr2	39403448	39403449	chr2:39403449:A:G	rs72801478	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	39439685	39439686	chr2:39439686:G:A	rs182215912	G	A	G	Sox1_MA0870.1	10	1	+	5.279168075356585	0.7115959197838113	GCCAATTCCAGTGCC
chr2	39672294	39672295	chr2:39672295:A:G	rs917964	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	39772665	39772666	chr2:39772666:T:A	rs1861258	T	A	T	Sox1_MA0870.1	33	0	+	0	0	.
chr2	39938990	39938991	chr2:39938991:C:T	rs17024636	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	40242099	40242100	chr2:40242100:T:C	rs415695	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr2	40321255	40321256	chr2:40321256:G:T	rs759387	G	T	G	Sox1_MA0870.1	12	1	-	7.663571984273623	7.663571984273623	AACAATTACATTCCT
chr2	40358018	40358019	chr2:40358019:T:C	rs77584700	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr2	40367791	40367792	chr2:40367792:C:T	rs6544333	C	T	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	40367797	40367798	chr2:40367798:A:G	rs11687700	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	40391447	40391448	chr2:40391448:T:C	rs6712218	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	40448554	40448555	chr2:40448555:G:C	rs12105772	G	C	G	Sox1_MA0870.1	7	1	-	4.489453955921781	4.522236455661315	AACAAAACCAGTGGA
chr2	40455955	40455956	chr2:40455956:A:G	rs56307721	A	G	A	Sox1_MA0870.1	11	1	-	4.793581893719658	-0.16181309209067596	GACAAATTCATTGGC
chr2	40505327	40505328	chr2:40505328:T:A	rs115434183	T	A	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	40505716	40505717	chr2:40505717:G:A	rs4952631	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr2	40721762	40721763	chr2:40721763:G:C	rs2888699	G	C	G	Sox1_MA0870.1	14	1	-	6.488233616955078	6.273560933718379	AACTATGCCAGTGTC
chr2	40827777	40827778	chr2:40827778:T:C	rs12712714	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr2	40886795	40886796	chr2:40886796:T:C	rs62141417	T	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	40902529	40902530	chr2:40902530:G:C	rs10182003	G	C	G	Sox1_MA0870.1	28	0	-	0	0	.
chr2	41040225	41040226	chr2:41040226:G:A	rs139665765	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	41143676	41143677	chr2:41143677:A:G	rs1866904	A	G	G	Sox1_MA0870.1	3	1	+	4.203741464606587	-2.696848202590638	CACATTGACAGTGTG
chr2	41329552	41329553	chr2:41329553:T:C	rs13419110	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	41443209	41443210	chr2:41443210:A:C	rs6544423	A	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr2	41925826	41925827	chr2:41925827:G:A	rs4952545	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	42012760	42012761	chr2:42012761:T:C	rs12996528	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	42076446	42076447	chr2:42076447:A:C	rs12329065	A	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr2	42241330	42241331	chr2:42241331:A:G	rs7583046	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	42298167	42298168	chr2:42298168:G:A	rs6544538	G	A	A	Sox1_MA0870.1	25	0	+	0	0	.
chr2	42366709	42366710	chr2:42366710:A:C	rs80210883	A	C	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	42721974	42721975	chr2:42721975:T:C	chr2:42721975:T:C	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	42873162	42873163	chr2:42873163:A:T	rs72872273	A	T	T	Sox1_MA0870.1	11	1	-	4.04228776393619	-2.860444922920642	AACATGAACATTGTT
chr2	42886216	42886217	chr2:42886217:C:T	rs4350801	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	42963247	42963248	chr2:42963248:A:G	rs13035036	A	G	A	Sox1_MA0870.1	11	1	-	4.807404461705861	-0.1479905241044739	CACACTTCCACTGTC
chr2	42985254	42985255	chr2:42985255:T:C	rs6544622	T	C	C	Sox1_MA0870.1	13	1	+	4.40527109760511	2.227615800154116	CTCAACAACATTGTA
chr2	42985275	42985276	chr2:42985276:G:A	rs12476250	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr2	43408579	43408580	chr2:43408580:C:T	rs1015572572	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr2	43590106	43590107	chr2:43590107:A:G	rs78925283	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr2	43617076	43617077	chr2:43617077:G:A	rs76163151	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	43642493	43642494	chr2:43642494:G:A	rs7569547	G	A	A	Sox1_MA0870.1	10	1	+	4.48098023068282	-0.08659192488995215	CTCTATTACAGTGTT
chr2	43714276	43714277	chr2:43714277:C:T	rs57980478	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	43829304	43829305	chr2:43829305:C:T	rs4148184	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	43896618	43896619	chr2:43896619:G:A	rs76850904	G	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr2	43896619	43896620	chr2:43896620:G:A	rs3795859	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr2	43974119	43974120	chr2:43974120:T:C	rs7593842	T	C	t	Sox1_MA0870.1	10	1	+	10.12770912890718	3.319012044770846	GCCAATTACATTGTC
chr2	44268417	44268418	chr2:44268418:T:C	rs1013376003	T	C	T	Sox1_MA0870.1	0	1	+	9.57721077355102	10.2795875306985	TTCACTTACATTGTT
chr2	44325336	44325337	chr2:44325337:G:A	rs76270585	G	A	G	Sox1_MA0870.1	8	1	-	6.241759422097479	2.0601498754601963	CACACTGCCAGTGCA
chr2	44498700	44498701	chr2:44498701:C:T	rs76883991	C	T	C	Sox1_MA0870.1	12	1	-	9.411466454188576	2.5027116748733547	AACAATTCCTTTGTT
chr2	44722076	44722077	chr2:44722077:G:A	rs559626606	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	44802278	44802279	chr2:44802279:T:C	rs114674148	T	C	T	Sox1_MA0870.1	1	1	-	6.760363332334224	2.6620726769410834	TACAATTTCAGTGGG
chr2	44841618	44841619	chr2:44841619:A:G	rs574398673	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr2	44920553	44920554	chr2:44920554:C:T	rs529438	C	T	C	Sox1_MA0870.1	8	1	+	4.638122916887971	0.4565133702506893	CACAATTACAGTCTG
chr2	45056819	45056820	chr2:45056820:G:A	rs7583949	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	45275503	45275504	chr2:45275504:A:G	rs71422153	A	G	A	Sox1_MA0870.1	6	1	-	10.209440992981499	5.793290705862597	AACACTTTCAGTGTA
chr2	45275529	45275530	chr2:45275530:G:A	rs1447098024	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	45445000	45445001	chr2:45445001:T:C	rs17393934	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr2	45543592	45543593	chr2:45543593:G:A	rs3770292	G	A	A	Sox1_MA0870.1	10	1	+	6.950295574743113	2.3827234191703406	TTCAATTTCAGTGTA
chr2	45723130	45723131	chr2:45723131:T:C	rs7577664	T	C	T	Sox1_MA0870.1	9	1	-	4.922154963592969	-1.986599815722251	AACAAATACACTGTT
chr2	45744242	45744243	chr2:45744243:A:G	rs146130377	A	G	A	Sox1_MA0870.1	14	1	-	6.283116497456762	4.772107092975357	TCCACTACCATTGAT
chr2	45791513	45791514	chr2:45791514:C:A	rs72799991	C	A	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	45839662	45839663	chr2:45839663:A:G	rs71422175	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr2	45905720	45905721	chr2:45905721:G:T	rs13015067	G	T	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	46001874	46001875	chr2:46001875:A:T	chr2:46001875:A:T	A	T	A	Sox1_MA0870.1	26	0	-	0	0	.
chr2	46007278	46007279	chr2:46007279:T:C	rs10177075	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	46073771	46073772	chr2:46073772:A:G	rs867279180	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	46171426	46171427	chr2:46171427:C:A	rs281479	C	A	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	46223469	46223470	chr2:46223470:G:A	rs11689759	G	A	a	Sox1_MA0870.1	4	1	-	5.719348611135846	0.8985832915908745	AACACTTCCATCGCC
chr2	46249885	46249886	chr2:46249886:A:G	rs78446731	A	G	A	Sox1_MA0870.1	10	1	-	5.036717121033887	-1.7719799631024467	TGCAATTCCATTGAA
chr2	46268973	46268974	chr2:46268974:C:G	rs76840548	C	G	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	46294380	46294381	chr2:46294381:C:G	rs72885037	C	G	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	46496079	46496080	chr2:46496080:C:A	rs7590802	C	A	C	Sox1_MA0870.1	26	0	+	0	0	.
chr2	46535508	46535509	chr2:46535509:G:A	rs74331478	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	46544281	46544282	chr2:46544282:C:T	rs1003875666	C	T	C	Sox1_MA0870.1	5	1	+	4.360933410083362	11.26409816873112	TACAACATCATTGCA
chr2	46544290	46544291	chr2:46544291:A:C	rs140447180	A	C	a	Sox1_MA0870.1	14	1	+	4.360933410083362	4.750937330387105	TACAACATCATTGCA
chr2	46559351	46559352	chr2:46559352:G:A	rs12712976	G	A	A	Sox1_MA0870.1	2	1	-	5.0703471561401265	-1.8384076231750934	AACACTATCATTAAT
chr2	46615270	46615271	chr2:46615271:A:G	rs2242033	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr2	46618709	46618710	chr2:46618710:A:G	rs2122715	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr2	46655716	46655717	chr2:46655717:C:G	rs76735197	C	G	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	46802882	46802883	chr2:46802883:G:C	rs34918913	G	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	46875515	46875516	chr2:46875516:G:A	rs753897	G	A	A	Sox1_MA0870.1	6	1	+	4.893538098493269	6.432144791633988	TACAGTGGCATTGCT
chr2	46917063	46917064	chr2:46917064:C:G	rs13388612	C	G	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	47005447	47005448	chr2:47005448:G:A	rs55839799	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr2	47008880	47008881	chr2:47008881:T:G	chr2:47008881:T:G	T	G	T	Sox1_MA0870.1	17	0	+	0	0	.
chr2	47091850	47091851	chr2:47091851:A:G	rs10181620	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	47121615	47121616	chr2:47121616:A:G	rs75776230	A	G	A	Sox1_MA0870.1	1	1	+	5.5984537288974625	1.500163073504321	TACAAATTCAGTGTC
chr2	47680102	47680103	chr2:47680103:C:T	rs79924484	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	48114316	48114317	chr2:48114317:G:C	rs79117374	G	C	G	Sox1_MA0870.1	22	0	+	0	0	.
chr2	48116809	48116810	chr2:48116810:G:A	rs6545021	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr2	48257327	48257328	chr2:48257328:C:T	rs12713007	C	T	C	Sox1_MA0870.1	4	1	+	4.014178334740426	-0.8065869848045445	CTCACTACCACTGTT
chr2	48444626	48444627	chr2:48444627:A:G	rs55757090	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	48447586	48447587	chr2:48447587:A:G	rs76953906	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	48605878	48605879	chr2:48605879:A:T	rs62137476	A	T	A	Sox1_MA0870.1	22	0	+	0	0	.
chr2	48694235	48694236	chr2:48694236:T:C	rs2293275	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr2	48754506	48754507	chr2:48754507:A:G	rs4073656	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr2	48890966	48890967	chr2:48890967:G:A	rs112804717	G	A	G	Sox1_MA0870.1	11	1	-	3.7812834093564764	8.736678395166809	AACAATAACAACGCT
chr2	48906783	48906784	chr2:48906784:A:G	rs10170423	A	G	G	Sox1_MA0870.1	13	1	+	4.8366688069480785	4.539647106900165	AACAATAGCAGAGAT
chr2	49110816	49110817	chr2:49110817:C:T	rs2349715	C	T	T	Sox1_MA0870.1	18	0	-	0	0	.
chr2	49110836	49110837	chr2:49110837:C:T	rs7597101	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	49270174	49270175	chr2:49270175:A:G	rs1365852	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr2	49809669	49809670	chr2:49809670:T:G	rs11673881	T	G	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	50208185	50208186	chr2:50208186:A:G	rs17040212	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	50208216	50208217	chr2:50208217:G:A	rs6545156	G	A	G	Sox1_MA0870.1	12	1	+	3.0552887258323578	-3.853466053482862	CACACTACCAGGGTA
chr2	50431983	50431984	chr2:50431984:C:A	rs6747128	C	A	C	Sox1_MA0870.1	29	0	-	0	0	.
chr2	50606998	50606999	chr2:50606999:G:A	rs12477674	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr2	51822102	51822103	chr2:51822103:T:A	rs6545237	T	A	A	Sox1_MA0870.1	34	0	+	0	0	.
chr2	52365917	52365918	chr2:52365918:C:G	rs4971810	C	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr2	52406313	52406314	chr2:52406314:A:T	rs75738950	A	T	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	52681488	52681489	chr2:52681489:T:C	rs350792	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr2	52704993	52704994	chr2:52704994:T:C	rs6738153	T	C	T	Sox1_MA0870.1	4	1	-	5.5962215182603305	-1.1813567359098567	ATCAATACCATTCTC
chr2	52710909	52710910	chr2:52710910:G:C	rs7573539	G	C	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	53423678	53423679	chr2:53423679:C:T	rs1494018	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr2	53504357	53504358	chr2:53504358:G:A	rs7586411	G	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	53740692	53740693	chr2:53740693:T:C	rs74905718	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	54093637	54093638	chr2:54093638:G:C	rs13418839	G	C	G	Sox1_MA0870.1	8	1	-	5.156727764490903	1.386224771590566	TTTAATATCATTGTT
chr2	54093661	54093662	chr2:54093662:C:T	rs13418658	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	54108306	54108307	chr2:54108307:G:C	rs2287644	G	C	G	Sox1_MA0870.1	27	0	-	0	0	.
chr2	54137805	54137806	chr2:54137806:A:G	rs7569743	A	G	G	Sox1_MA0870.1	6	1	-	3.97105265598868	-0.4450976311302203	GGCAATTCCATTATT
chr2	54234241	54234242	chr2:54234242:G:A	rs843666	G	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr2	54239557	54239558	chr2:54239558:A:G	rs543797163	A	G	A	Sox1_MA0870.1	6	1	+	4.380332908546808	2.84172621540609	TGAAATAGCATTGTT
chr2	54387391	54387392	chr2:54387392:C:A	rs147410969	C	A	C	Sox1_MA0870.1	29	0	-	0	0	.
chr2	54401943	54401944	chr2:54401944:G:A	rs4671925	G	A	G	Sox1_MA0870.1	13	1	-	4.823449283721509	7.001104581172502	GGCAATAAGATTGCC
chr2	54500944	54500945	chr2:54500945:T:G	rs6545415	T	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr2	54534395	54534396	chr2:54534396:C:T	rs10165490	C	T	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	54563151	54563152	chr2:54563152:A:G	rs184381375	A	G	T	Sox1_MA0870.1	30	0	-	0	0	.
chr2	54581184	54581185	chr2:54581185:G:A	rs10170355	G	A	A	Sox1_MA0870.1	5	1	+	3.828669846549788	5.7127045918870145	TACACGTGCATTGTG
chr2	54581202	54581203	chr2:54581203:A:T	rs10193692	A	T	A	Sox1_MA0870.1	23	0	+	0	0	.
chr2	54590315	54590316	chr2:54590316:A:T	rs10206143	A	T	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	55018040	55018041	chr2:55018041:T:C	rs12477711	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	55117607	55117608	chr2:55117608:G:C	rs7574696	G	C	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	55420994	55420995	chr2:55420995:G:A	rs3762511	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	55521080	55521081	chr2:55521081:G:C	rs17278044	G	C	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	55618925	55618926	chr2:55618926:A:G	rs571745368	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr2	55618929	55618930	chr2:55618930:A:G	rs1404460700	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr2	55764515	55764516	chr2:55764516:T:C	rs1465624	T	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	55856273	55856274	chr2:55856274:C:A	rs74733995	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr2	55955530	55955531	chr2:55955531:C:T	rs72811742	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	55992527	55992528	chr2:55992528:A:G	rs956251483	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr2	56120309	56120310	chr2:56120310:G:T	rs11883726	G	T	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	56127828	56127829	chr2:56127829:C:T	rs1023713	C	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	56370044	56370045	chr2:56370045:G:A	rs17268792	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr2	56807112	56807113	chr2:56807113:A:G	rs10202272	A	G	A	Sox1_MA0870.1	9	1	+	5.10509889883612	-1.8036558804791007	TACAATAAGATTCTT
chr2	57171865	57171866	chr2:57171866:T:C	rs984663	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	57214574	57214575	chr2:57214575:C:T	rs4390805	C	T	C	Sox1_MA0870.1	7	1	-	6.774749943005336	7.171728270801845	AAAAATAGCATTGGT
chr2	57692756	57692757	chr2:57692757:T:C	rs142378723	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	57746208	57746209	chr2:57746209:A:C	rs3886275	A	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	57764976	57764977	chr2:57764977:G:A	rs13032423	G	A	g	Sox1_MA0870.1	14	1	-	5.356829003322691	6.867838407804095	GCCACTATCATTGAC
chr2	58193786	58193787	chr2:58193787:G:C	rs11125745	G	C	G	Sox1_MA0870.1	2	1	-	5.073576832046841	-1.8351779472683796	AACAAACACAGTGTT
chr2	59077751	59077752	chr2:59077752:G:A	rs13011586	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	59758930	59758931	chr2:59758931:C:T	rs6545750	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	59880606	59880607	chr2:59880607:A:G	rs10200982	A	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	59934021	59934022	chr2:59934022:C:T	rs17328524	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr2	60045475	60045476	chr2:60045476:T:C	rs13021024	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr2	60320431	60320432	chr2:60320432:A:G	rs11125833	A	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	60336176	60336177	chr2:60336177:G:A	rs1047382532	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr2	60409478	60409479	chr2:60409479:C:A	rs17027944	C	A	C	Sox1_MA0870.1	27	0	+	0	0	.
chr2	60471325	60471326	chr2:60471326:C:T	rs4672394	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	60484205	60484206	chr2:60484206:C:T	rs114529748	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr2	60511925	60511926	chr2:60511926:T:A	rs6545819	T	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr2	61147366	61147367	chr2:61147367:T:G	rs1729655	T	G	G	Sox1_MA0870.1	5	1	+	5.2905433079948825	-1.612621450652877	GACAATAATATTATT
chr2	61539244	61539245	chr2:61539245:G:A	rs906854951	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	61715710	61715711	chr2:61715711:C:A	rs2421436	C	A	C	Sox1_MA0870.1	2	1	+	4.170468501849862	-2.738286277465358	CTCACTGACATTGGA
chr2	62182926	62182927	chr2:62182927:A:G	rs58155782	A	G	A	Sox1_MA0870.1	5	1	-	10.054139675654916	3.150974917007158	GACAATAGCAGTGCC
chr2	62187390	62187391	chr2:62187391:G:C	rs1410735626	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr2	62199992	62199993	chr2:62199993:T:C	rs62148376	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	62299535	62299536	chr2:62299536:G:A	rs79551081	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	62340972	62340973	chr2:62340973:C:T	rs111435911	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	62340973	62340974	chr2:62340974:C:T	rs57171330	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	62341966	62341967	chr2:62341967:G:A	rs72897544	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	62540502	62540503	chr2:62540503:C:A	rs1376507454	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	62589883	62589884	chr2:62589884:G:C	rs17576670	G	C	G	Sox1_MA0870.1	2	1	-	3.4600501471477387	-3.448704632167483	ACCAGTGACATTGCT
chr2	62825912	62825913	chr2:62825913:G:A	rs11688816	G	A	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	63192647	63192648	chr2:63192648:A:C	rs113738692	A	C	A	Sox1_MA0870.1	3	1	+	5.08045566819731	-0.005309256840865473	CACAAAGCCAGTGCT
chr2	63424861	63424862	chr2:63424862:G:A	rs10209490	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	63661227	63661228	chr2:63661228:C:T	rs768401887	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	63743327	63743328	chr2:63743328:A:T	rs17619855	A	T	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	63861247	63861248	chr2:63861248:G:A	rs547460031	G	A	G	Sox1_MA0870.1	12	1	+	9.880504113110494	2.9717493337952736	GACCATTTCATTGTT
chr2	64054662	64054663	chr2:64054663:C:T	rs13015703	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr2	64067447	64067448	chr2:64067448:T:C	rs35939512	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr2	64124273	64124274	chr2:64124274:A:C	rs7585957	A	C	C	Sox1_MA0870.1	11	1	-	4.757861218747698	-2.1448714681091334	AACACTTAAAGTGTA
chr2	64197959	64197960	chr2:64197960:G:A	rs6758601	G	A	A	Sox1_MA0870.1	2	1	-	4.063585356559044	-2.845169422756176	AACACTCCCAGTGGT
chr2	64223481	64223482	chr2:64223482:G:A	rs1001742656	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr2	64258330	64258331	chr2:64258331:T:G	rs2251764	T	G	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	64374126	64374127	chr2:64374127:C:T	rs4671574	C	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	64515489	64515490	chr2:64515490:T:C	rs78136426	T	C	t	Sox1_MA0870.1	26	0	+	0	0	.
chr2	64515493	64515494	chr2:64515494:A:G	rs183575940	A	G	a	Sox1_MA0870.1	30	0	+	0	0	.
chr2	64594318	64594319	chr2:64594319:A:G	rs11688177	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	64864761	64864762	chr2:64864762:C:T	rs150152406	C	T	.	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	64898643	64898644	chr2:64898644:T:C	rs6707916	T	C	C	Sox1_MA0870.1	10	1	+	9.928825716132518	3.1201286319961854	GGCACTAGCATTGTT
chr2	64972774	64972775	chr2:64972775:C:G	rs111730782	C	G	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	65000964	65000965	chr2:65000965:C:T	rs115853843	C	T	C	Sox1_MA0870.1	13	1	-	4.147268804449539	4.444290504497453	CACCATTGCAGTGGT
chr2	65053214	65053215	chr2:65053215:C:T	rs13033002	C	T	C	Sox1_MA0870.1	13	1	+	6.958733471348529	9.136388768799522	CAGAATATCATTGCT
chr2	65226786	65226787	chr2:65226787:T:C	rs34813149	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	65291125	65291126	chr2:65291126:A:G	rs4671652	A	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	65422445	65422446	chr2:65422446:G:A	rs10153675	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr2	65558827	65558828	chr2:65558828:G:A	rs1641469	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr2	65624001	65624002	chr2:65624002:C:T	rs112832799	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr2	65917053	65917054	chr2:65917054:T:A	rs62144103	T	A	T	Sox1_MA0870.1	13	1	+	6.243520727834776	2.8979947012456164	TACAATAGCAGAGTT
chr2	65937854	65937855	chr2:65937855:A:T	rs12463721	A	T	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	66522477	66522478	chr2:66522478:A:G	rs4430933	A	G	A	Sox1_MA0870.1	6	1	-	8.453567800568162	4.037417513449261	ATCAAATACATTGTT
chr2	66542021	66542022	chr2:66542022:C:T	rs17625742	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	67180511	67180512	chr2:67180512:A:G	rs6744324	A	G	A	Sox1_MA0870.1	4	1	+	8.658833082184772	1.8812548280145833	AAGAATACCATTGTG
chr2	67188600	67188601	chr2:67188601:A:G	rs75257340	A	G	G	Sox1_MA0870.1	3	1	+	4.971815377393553	-1.928774289803672	TACACAGGCATTGTA
chr2	67222009	67222010	chr2:67222010:C:G	rs78221752	C	G	C	Sox1_MA0870.1	26	0	+	0	0	.
chr2	67255290	67255291	chr2:67255291:T:C	rs752166	T	C	T	Sox1_MA0870.1	4	1	+	4.0214358200467775	8.842201139591749	CACATTGGCAGTGTC
chr2	67269303	67269304	chr2:67269304:G:A	rs2062203	G	A	G	Sox1_MA0870.1	7	1	-	8.873505765421472	8.861676712873098	AAGAATACCATTGTC
chr2	67923995	67923996	chr2:67923996:C:T	rs924719	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr2	68122390	68122391	chr2:68122391:T:C	rs2861799	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	68230440	68230441	chr2:68230441:C:T	rs12468533	C	T	T	Sox1_MA0870.1	8	1	+	7.013396818644468	2.8317872720071855	CACAATCTCATTGGT
chr2	68236310	68236311	chr2:68236311:C:T	rs7584955	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr2	68418737	68418738	chr2:68418738:A:G	rs12468278	A	G	A	Sox1_MA0870.1	9	1	+	5.496756856836999	-1.4119979224782222	AACAGTTGCATTGCA
chr2	68749215	68749216	chr2:68749216:T:A	rs4854508	T	A	A	Sox1_MA0870.1	1	1	-	7.322455151363224	4.0451709042020845	AACAAATTCAGTGTG
chr2	68784690	68784691	chr2:68784691:G:A	rs112552084	G	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	68789509	68789510	chr2:68789510:A:G	rs17602799	A	G	A	Sox1_MA0870.1	3	1	+	5.860825025391529	-1.0397646418056965	GACATTAGCATTGAT
chr2	68817395	68817396	chr2:68817396:A:T	rs2311420	A	T	A	Sox1_MA0870.1	18	0	-	0	0	.
chr2	68909030	68909031	chr2:68909031:T:G	rs79143619	T	G	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	68974358	68974359	chr2:68974359:A:C	rs75564632	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	69120111	69120112	chr2:69120112:A:G	rs62134399	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	69387540	69387541	chr2:69387541:T:C	rs149239600	T	C	T	Sox1_MA0870.1	4	1	-	4.456071468378242	-2.321506785791947	AACAATTCCATCCTT
chr2	69999007	69999008	chr2:69999008:G:A	rs4853243	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr2	70069064	70069065	chr2:70069065:G:A	rs986152932	G	A	g	Sox1_MA0870.1	8	1	-	6.4507022584034	2.2690927117661173	ACCAAATACATTGTC
chr2	70245349	70245350	chr2:70245350:G:A	rs2592178	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	70247364	70247365	chr2:70247365:T:C	rs17615583	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr2	70448574	70448575	chr2:70448575:T:G	rs11466297	T	G	T	Sox1_MA0870.1	32	0	+	0	0	.
chr2	70620478	70620479	chr2:70620479:G:A	rs72895865	G	A	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	70708094	70708095	chr2:70708095:A:T	rs1541582	A	T	T	Sox1_MA0870.1	3	1	+	3.1127362644865366	-2.401559041590799	CACACTACCTTTGCA
chr2	70726852	70726853	chr2:70726853:G:C	rs1014592	G	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr2	70778818	70778819	chr2:70778819:T:C	rs9646990	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr2	70902907	70902908	chr2:70902908:C:A	rs4852728	C	A	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	71036365	71036366	chr2:71036366:A:G	rs9679679	A	G	.	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	71044305	71044306	chr2:71044306:C:T	rs77538247	C	T	.	Sox1_MA0870.1	33	0	+	0	0	.
chr2	71119201	71119202	chr2:71119202:A:G	rs6546677	A	G	.	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	71389816	71389817	chr2:71389817:A:G	rs77581324	A	G	A	Sox1_MA0870.1	13	1	-	5.532763600057175	3.3551083026061796	AACAATAAGATTATC
chr2	71506451	71506452	chr2:71506452:C:T	rs12469262	C	T	C	Sox1_MA0870.1	12	1	-	6.104191744393233	-0.804563034921987	CACAAGGCCATTGTC
chr2	71603558	71603559	chr2:71603559:T:C	rs1529409	T	C	C	Sox1_MA0870.1	13	1	+	4.046552530629772	1.8688972331787777	GACATTTTCAGTGTA
chr2	71711057	71711058	chr2:71711058:A:G	rs1896496	A	G	G	Sox1_MA0870.1	5	1	-	5.2331552325296755	-1.6700095261180823	TACAATAGCACTGAT
chr2	71718301	71718302	chr2:71718302:C:T	rs934069	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr2	71893028	71893029	chr2:71893029:A:G	rs17007566	A	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	71967480	71967481	chr2:71967481:T:C	rs991136	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	72078803	72078804	chr2:72078804:T:C	rs10200160	T	C	T	Sox1_MA0870.1	6	1	-	6.895263840235961	5.356657147095243	CACAATATCTGTGTT
chr2	72111072	72111073	chr2:72111073:T:C	rs10209307	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr2	72130206	72130207	chr2:72130207:C:T	rs61138718	C	T	T	Sox1_MA0870.1	18	0	-	0	0	.
chr2	72157197	72157198	chr2:72157198:A:G	rs7557210	A	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	72263189	72263190	chr2:72263190:G:T	rs6546753	G	T	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	72548595	72548596	chr2:72548596:C:T	rs67970313	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	72814072	72814073	chr2:72814073:T:C	rs143399109	T	C	T	Sox1_MA0870.1	10	1	+	7.241397536472763	0.4327004523364286	CACAATATCATAGTA
chr2	72814090	72814091	chr2:72814091:G:A	rs139010951	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr2	72850801	72850802	chr2:72850802:G:A	rs71416765	G	A	g	Sox1_MA0870.1	26	0	+	0	0	.
chr2	73911010	73911011	chr2:73911011:C:T	rs2463120	C	T	C	Sox1_MA0870.1	10	1	+	5.306275293135475	12.114972377271808	ATCAATACCACTGTA
chr2	73936803	73936804	chr2:73936804:G:C	rs831528	G	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	73968583	73968584	chr2:73968584:A:C	rs74703312	A	C	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	74389531	74389532	chr2:74389532:A:G	rs6740481	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	74613266	74613267	chr2:74613267:C:T	rs6705956	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr2	74735144	74735145	chr2:74735145:C:G	rs115553932	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	75021772	75021773	chr2:75021773:C:T	rs116631008	C	T	C	Sox1_MA0870.1	0	1	-	3.1177876076803828	4.459910750487136	GACAATGGCAGTCCT
chr2	75021782	75021783	chr2:75021783:A:G	rs112349432	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	75194446	75194447	chr2:75194447:G:A	rs3755469	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	75394296	75394297	chr2:75394297:A:G	rs7568808	A	G	G	Sox1_MA0870.1	11	1	-	5.011591641933215	0.05619665612288027	AACCCTGTCATTGCC
chr2	75563715	75563716	chr2:75563716:G:A	rs13020202	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr2	75564516	75564517	chr2:75564517:C:G	rs77244715	C	G	C	Sox1_MA0870.1	10	1	-	5.175171773185319	0.6075996176125459	CACAACATCAGTGTG
chr2	75603635	75603636	chr2:75603636:A:G	rs112030914	A	G	A	Sox1_MA0870.1	5	1	-	8.609800089084981	1.706635330437222	TACAGTAGCATTGTT
chr2	75948005	75948006	chr2:75948006:G:A	rs17011958	G	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr2	75960123	75960124	chr2:75960124:A:G	rs2692743	A	G	A	Sox1_MA0870.1	10	1	+	8.139429650922105	12.707001806494878	CACAATGACAATGTT
chr2	76160060	76160061	chr2:76160061:A:G	rs1440881	A	G	A	Sox1_MA0870.1	7	1	+	3.620591729728663	3.223613401932154	CACAATGACAGTCCT
chr2	76421866	76421867	chr2:76421867:T:C	rs12614728	T	C	T	Sox1_MA0870.1	4	1	-	3.8902592949017447	-2.887318959268443	CACAATGGCCGTGTC
chr2	76641074	76641075	chr2:76641075:G:A	rs185006672	G	A	G	Sox1_MA0870.1	12	1	+	11.32674846877934	4.41799368946412	AGCAATAGCATTGTA
chr2	76641096	76641097	chr2:76641097:A:G	rs79944402	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr2	76959012	76959013	chr2:76959013:G:A	rs746208412	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr2	77429033	77429034	chr2:77429034:C:T	rs13403846	C	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr2	77769165	77769166	chr2:77769166:C:G	rs13399714	C	G	C	Sox1_MA0870.1	8	1	+	5.173914474459075	1.4034114815587362	CACACTCACAGTGTG
chr2	77769166	77769167	chr2:77769167:A:G	rs13425060	A	G	A	Sox1_MA0870.1	9	1	+	5.173914474459075	-1.7348403048561463	CACACTCACAGTGTG
chr2	78059717	78059718	chr2:78059718:T:C	rs71422996	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr2	78550439	78550440	chr2:78550440:G:A	rs74979852	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	78645305	78645306	chr2:78645306:G:A	rs1239103	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr2	78977758	78977759	chr2:78977759:A:T	rs570220603	A	T	A	Sox1_MA0870.1	29	0	+	0	0	.
chr2	79041838	79041839	chr2:79041839:T:C	rs283845	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	79530614	79530615	chr2:79530615:A:G	rs949751480	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr2	79960801	79960802	chr2:79960802:G:A	rs76646866	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	80157654	80157655	chr2:80157655:T:C	rs377617156	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	80498341	80498342	chr2:80498342:C:A	rs7604514	C	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr2	81658668	81658669	chr2:81658669:G:A	rs56031266	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	81876977	81876978	chr2:81876978:T:C	rs72923238	T	C	T	Sox1_MA0870.1	1	1	-	7.618135838405429	3.519845183012288	AACCAAAACATTGTT
chr2	81981495	81981496	chr2:81981496:C:T	rs12614042	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr2	82183702	82183703	chr2:82183703:C:T	rs7561758	C	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	82280834	82280835	chr2:82280835:C:T	rs12993756	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	83007308	83007309	chr2:83007309:A:C	rs62146758	A	C	A	Sox1_MA0870.1	13	1	+	9.685581907205123	10.853452636343286	ATCAATTTCATTGAT
chr2	83007908	83007909	chr2:83007909:C:T	rs62148861	C	T	C	Sox1_MA0870.1	7	1	-	3.5145649827855787	3.911543310582086	AACAATAGCATAATT
chr2	83142897	83142898	chr2:83142898:T:C	rs183577731	T	C	t	Sox1_MA0870.1	6	1	+	4.47279151638028	0.0566412292613786	AGCAATTTGAGTGTG
chr2	83273330	83273331	chr2:83273331:A:G	rs12620301	A	G	G	Sox1_MA0870.1	3	1	+	4.6955177139785995	-2.205071953218625	CACACTTTCATTATC
chr2	83439650	83439651	chr2:83439651:T:C	rs2195503	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	84285972	84285973	chr2:84285973:A:C	chr2:84285973:A:C	A	C	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	85111209	85111210	chr2:85111210:A:C	rs79402360	A	C	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	85274285	85274286	chr2:85274286:C:T	rs10201489	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	85276444	85276445	chr2:85276445:A:C	rs10184690	A	C	A	Sox1_MA0870.1	16	0	+	0	0	.
chr2	85531057	85531058	chr2:85531058:A:G	rs1457984414	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr2	85542587	85542588	chr2:85542588:C:G	rs1078004	C	G	G	Sox1_MA0870.1	2	1	+	5.202040791692964	-1.7067139876222543	CGCAAAATCATTGTG
chr2	85561429	85561430	chr2:85561430:G:T	rs776665054	G	T	G	Sox1_MA0870.1	12	1	+	3.3749071225466554	-3.5338476567685646	GACACCGCCATTGCT
chr2	85606202	85606203	chr2:85606203:C:T	rs56367745	C	T	C	Sox1_MA0870.1	11	1	+	4.782310222793103	9.737705208603437	GCCAATTACATCGTA
chr2	85668580	85668581	chr2:85668581:C:T	rs3024791	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr2	85693205	85693206	chr2:85693206:T:C	rs2886767	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr2	85826688	85826689	chr2:85826689:C:G	rs34593202	C	G	C	Sox1_MA0870.1	34	0	-	0	0	.
chr2	85850409	85850410	chr2:85850410:C:T	rs114993002	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr2	85950934	85950935	chr2:85950935:T:C	rs893443	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	86114204	86114205	chr2:86114205:G:A	rs10184246	G	A	G	Sox1_MA0870.1	2	1	-	5.384254435754556	-1.524500343560664	CACAATATCTGTGTC
chr2	86661409	86661410	chr2:86661410:A:G	rs76662362	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	86863445	86863446	chr2:86863446:G:A	rs754868699	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	87680946	87680947	chr2:87680947:G:A	rs146472401	G	A	.	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	87940919	87940920	chr2:87940920:A:C	rs115490520	A	C	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	88011470	88011471	chr2:88011471:C:T	rs6735537	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr2	88144680	88144681	chr2:88144681:G:A	rs12478496	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	88147744	88147745	chr2:88147745:T:G	rs80324973	T	G	T	Sox1_MA0870.1	5	1	+	5.950041314371521	-0.9531234442762383	ACCACTGCCATTGCA
chr2	88216242	88216243	chr2:88216243:T:C	rs6547762	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr2	88235805	88235806	chr2:88235806:T:C	rs11694318	T	C	C	Sox1_MA0870.1	10	1	+	3.8680680320219927	-2.940629052114341	CCCAATACCATTTTC
chr2	88602213	88602214	chr2:88602214:C:T	rs11681299	C	T	C	Sox1_MA0870.1	4	1	+	5.010801224833328	0.19003590528835623	TACACTAGCATTTTC
chr2	88755913	88755914	chr2:88755914:T:C	rs76045548	T	C	N	Sox1_MA0870.1	18	0	+	0	0	.
chr2	88843378	88843379	chr2:88843379:A:G	rs2200334	A	G	a	Sox1_MA0870.1	14	1	-	7.954770274964135	6.4437608704827305	AACAATAATAGTGAT
chr2	88855533	88855534	chr2:88855534:T:G	rs232233	T	G	T	Sox1_MA0870.1	11	1	+	4.144680202317884	-2.7580524845389487	GACAAAGGGATTGTC
chr2	89538543	89538544	chr2:89538544:G:A	rs1356323175	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr2	89756870	89756871	chr2:89756871:C:A	rs1194289259	C	A	.	Sox1_MA0870.1	12	1	-	2.8626229575567237	-4.046131821758497	CCCACTGCCAGTGCC
chr2	89797454	89797455	chr2:89797455:C:T	rs927375809	C	T	.	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	89836422	89836423	chr2:89836423:C:T	rs373713985	C	T	.	Sox1_MA0870.1	28	0	-	0	0	.
chr2	89836425	89836426	chr2:89836426:T:A	rs796887169	T	A	.	Sox1_MA0870.1	25	0	-	0	0	.
chr2	89840444	89840445	chr2:89840445:A:G	rs796676857	A	G	.	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	90382578	90382579	chr2:90382579:A:C	rs6709827	A	C	.	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	90389893	90389894	chr2:90389894:T:A	rs7424330	T	A	.	Sox1_MA0870.1	17	0	-	0	0	.
chr2	91917757	91917758	chr2:91917758:A:G	rs1034603191	A	G	a	Sox1_MA0870.1	24	0	+	0	0	.
chr2	91986745	91986746	chr2:91986746:C:T	rs12105714	C	T	c	Sox1_MA0870.1	2	1	+	3.8199058456661414	-3.0888489336490794	CACCCTGGCATTGCC
chr2	93062442	93062443	chr2:93062443:T:C	rs1437958514	T	C	.	Sox1_MA0870.1	18	0	-	0	0	.
chr2	93141885	93141886	chr2:93141886:G:A	rs1185843149	G	A	.	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	93141912	93141913	chr2:93141913:T:C	rs1242351516	T	C	.	Sox1_MA0870.1	14	1	+	5.016906398876646	3.505896994395241	GACAATAGGAGCGTT
chr2	93161413	93161414	chr2:93161414:C:T	rs1346902896	C	T	.	Sox1_MA0870.1	8	1	-	5.4559754934247255	3.333308832006849	CACAAAAAGAGTGTT
chr2	93861968	93861969	chr2:93861969:G:T	rs1478214796	G	T	.	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	94759344	94759345	chr2:94759345:G:A	rs114056527	G	A	-	Sox1_MA0870.1	4	1	-	4.2992264594700496	-0.5215388600749217	GACACTGGGAGTGCT
chr2	94839318	94839319	chr2:94839319:G:A	rs7588397	G	A	-	Sox1_MA0870.1	26	0	-	0	0	.
chr2	94909177	94909178	chr2:94909178:G:A	rs115685643	G	A	g	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	95076707	95076708	chr2:95076708:A:C	rs3105100	A	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	96938717	96938718	chr2:96938718:C:T	rs59178801	C	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr2	97724656	97724657	chr2:97724657:A:G	rs13006704	A	G	A	Sox1_MA0870.1	5	1	-	3.8709398921031464	-3.0322248665446128	CACCATAGCATCGCT
chr2	98019668	98019669	chr2:98019669:T:C	rs17025744	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr2	98028109	98028110	chr2:98028110:T:C	rs116557386	T	C	T	Sox1_MA0870.1	4	1	-	7.577063006943513	0.7994847527733252	CCCAATTGGATTGTT
chr2	98028417	98028418	chr2:98028418:C:A	rs142038621	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	98149243	98149244	chr2:98149244:T:C	rs1178817847	T	C	T	Sox1_MA0870.1	1	1	-	6.632666450801635	2.534375795408494	AACAATAATATTATT
chr2	98268616	98268617	chr2:98268617:A:G	chr2:98268617:A:G	A	G	a	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	98360314	98360315	chr2:98360315:C:T	rs12475597	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr2	98360315	98360316	chr2:98360316:A:T	rs12463616	A	T	A	Sox1_MA0870.1	15	0	-	0	0	.
chr2	98654547	98654548	chr2:98654548:C:T	rs2309433	C	T	C	Sox1_MA0870.1	7	1	-	4.259283586533798	4.656261914330306	GTAAATGGCATTGTT
chr2	98884854	98884855	chr2:98884855:C:T	rs1574516	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr2	99084812	99084813	chr2:99084813:G:A	rs1563107	G	A	A	Sox1_MA0870.1	5	1	+	5.417449956910392	7.301484702247619	CCCAAGAGCATTGTT
chr2	99390939	99390940	chr2:99390940:A:T	rs7574135	A	T	T	Sox1_MA0870.1	5	1	-	8.495127598367255	3.47599758505672	AACCATAACAGTGTA
chr2	99561483	99561484	chr2:99561484:C:T	rs73964163	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	99708504	99708505	chr2:99708505:C:T	rs779068354	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr2	99729240	99729241	chr2:99729241:C:T	rs183423513	C	T	C	Sox1_MA0870.1	12	1	-	3.8905134909518235	-3.0182412883633964	AACAATGCCTTCGTT
chr2	99783332	99783333	chr2:99783333:C:T	rs72817090	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr2	99945015	99945016	chr2:99945016:G:A	rs62147658	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr2	100009121	100009122	chr2:100009122:G:A	rs72819165	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr2	100130472	100130473	chr2:100130473:A:G	rs11885529	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	100158582	100158583	chr2:100158583:T:C	rs4851256	T	C	t	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	100322870	100322871	chr2:100322871:G:A	rs12999151	G	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	100560667	100560668	chr2:100560668:T:G	rs2946595	T	G	t	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	100630636	100630637	chr2:100630637:C:A	rs114997083	C	A	C	Sox1_MA0870.1	0	1	+	5.479687993490796	6.7159853420457765	CGAAATAACATTGTT
chr2	100680439	100680440	chr2:100680440:A:G	rs2971025	A	G	G	Sox1_MA0870.1	27	0	-	0	0	.
chr2	100680448	100680449	chr2:100680449:G:C	rs2942893	G	C	G	Sox1_MA0870.1	18	0	-	0	0	.
chr2	100730275	100730276	chr2:100730276:G:A	rs72814918	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr2	100898305	100898306	chr2:100898306:A:C	rs191193237	A	C	a	Sox1_MA0870.1	23	0	-	0	0	.
chr2	101012535	101012536	chr2:101012536:T:G	rs1302	T	G	G	Sox1_MA0870.1	6	1	-	6.680737165528051	1.2915381626948492	CTCACTACCAGTGTA
chr2	101110013	101110014	chr2:101110014:C:T	rs17795653	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr2	101234382	101234383	chr2:101234383:C:T	rs1192801	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	101350543	101350544	chr2:101350544:A:T	rs79206709	A	T	A	Sox1_MA0870.1	31	0	-	0	0	.
chr2	101518201	101518202	chr2:101518202:A:G	rs145887344	A	G	A	Sox1_MA0870.1	7	1	-	3.772742821381952	3.784571873930325	CCCATTATCATTGTG
chr2	101546111	101546112	chr2:101546112:C:T	rs75039754	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	101546140	101546141	chr2:101546141:A:G	rs13035856	A	G	a	Sox1_MA0870.1	9	1	+	5.18141080506623	-1.7273439742489898	CACAATACCAGTTTG
chr2	101615164	101615165	chr2:101615165:T:C	rs4850984	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr2	101821050	101821051	chr2:101821051:A:G	rs12469922	A	G	A	Sox1_MA0870.1	13	1	-	10.033015007344002	7.855359709893008	AACAAAACCAGTGTT
chr2	101874289	101874290	chr2:101874290:G:C	rs7583833	G	C	G	Sox1_MA0870.1	15	0	+	0	0	.
chr2	102006355	102006356	chr2:102006356:A:G	rs3755482	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	102110250	102110251	chr2:102110251:T:C	rs13020596	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	102142110	102142111	chr2:102142111:C:T	rs188558233	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr2	102225488	102225489	chr2:102225489:A:C	rs2310241	A	C	C	Sox1_MA0870.1	23	0	+	0	0	.
chr2	102345880	102345881	chr2:102345881:C:T	rs62152662	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	102345885	102345886	chr2:102345886:C:G	rs62152663	C	G	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	102345889	102345890	chr2:102345890:T:C	rs1054096	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	102443852	102443853	chr2:102443853:A:G	rs4851584	A	G	G	Sox1_MA0870.1	9	1	+	7.13739609956936	0.22864132025413852	AGCTATTACATTGTT
chr2	102475255	102475256	chr2:102475256:A:G	rs10197881	A	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr2	102509524	102509525	chr2:102509525:C:T	rs4851608	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	102635231	102635232	chr2:102635232:T:C	rs2215945	T	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	103138853	103138854	chr2:103138854:G:A	rs13399720	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr2	103874400	103874401	chr2:103874401:C:T	rs74417024	C	T	C	Sox1_MA0870.1	7	1	+	3.7460167697239273	3.734187717175554	GACACTGCCACTGTA
chr2	103874405	103874406	chr2:103874406:G:A	rs548844138	G	A	G	Sox1_MA0870.1	12	1	+	3.7460167697239273	-3.1627380095912927	GACACTGCCACTGTA
chr2	103975178	103975179	chr2:103975179:G:A	rs111699028	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	104111427	104111428	chr2:104111428:G:C	rs67772867	G	C	G	Sox1_MA0870.1	2	1	-	5.423589426161777	-1.4851653531534434	AACTATGACATTGAA
chr2	104244165	104244166	chr2:104244166:G:A	rs67190962	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	104547376	104547377	chr2:104547377:C:T	rs1530129	C	T	C	Sox1_MA0870.1	8	1	+	5.239544035699025	1.0579344890617417	GACATTAGCAGTGTG
chr2	104761253	104761254	chr2:104761254:A:G	rs881911	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr2	105048836	105048837	chr2:105048837:T:C	rs12611887	T	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	105053297	105053298	chr2:105053298:T:C	rs73945012	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	105053305	105053306	chr2:105053306:A:C	rs17634925	A	C	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	105053340	105053341	chr2:105053341:C:T	rs73945013	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr2	105183334	105183335	chr2:105183335:T:C	rs2679850	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr2	105293101	105293102	chr2:105293102:G:A	rs2576746	G	A	G	Sox1_MA0870.1	14	1	-	3.6700942866183826	5.181103691099787	CGCAGTACCATTGTC
chr2	105444195	105444196	chr2:105444196:T:C	rs146478674	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr2	105447560	105447561	chr2:105447561:T:C	rs17030917	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr2	105546808	105546809	chr2:105546809:G:A	rs144831616	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	105546838	105546839	chr2:105546839:C:T	rs10180130	C	T	C	Sox1_MA0870.1	13	1	+	7.122381664395986	9.300036961846981	CTCACTATCATTGCC
chr2	105732379	105732380	chr2:105732380:A:G	rs146440214	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr2	105749774	105749775	chr2:105749775:G:A	rs997522	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	105773570	105773571	chr2:105773571:A:C	rs12468535	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	105950680	105950681	chr2:105950681:A:G	rs112111147	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr2	106005139	106005140	chr2:106005140:A:G	rs1669510	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr2	106027350	106027351	chr2:106027351:T:C	rs1647692	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	106039260	106039261	chr2:106039261:A:G	rs13028037	A	G	A	Sox1_MA0870.1	7	1	-	6.030601034262892	6.042430086811265	AACTCTGTCAGTGTT
chr2	106351099	106351100	chr2:106351100:G:C	rs12373568	G	C	g	Sox1_MA0870.1	16	0	-	0	0	.
chr2	106561007	106561008	chr2:106561008:A:G	rs59005995	A	G	a	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	106563210	106563211	chr2:106563211:A:G	rs62156079	A	G	a	Sox1_MA0870.1	4	1	+	9.001488260897785	2.2239100067275968	TACAATTTCATTGGG
chr2	106812749	106812750	chr2:106812750:T:C	rs75012206	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr2	106832531	106832532	chr2:106832532:C:T	rs12623034	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr2	106839401	106839402	chr2:106839402:T:C	rs67385458	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr2	106839910	106839911	chr2:106839911:C:T	rs41505654	C	T	T	Sox1_MA0870.1	18	0	-	0	0	.
chr2	107209191	107209192	chr2:107209192:G:A	rs61445083	G	A	g	Sox1_MA0870.1	-11	0	+	0	0	.
chr2	107323361	107323362	chr2:107323362:T:C	rs138651992	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	107439895	107439896	chr2:107439896:A:G	rs266188	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr2	107528963	107528964	chr2:107528964:C:T	rs1549367	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	107570347	107570348	chr2:107570348:G:A	rs1424776	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr2	107984953	107984954	chr2:107984954:C:T	rs333240	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	108245654	108245655	chr2:108245655:C:T	rs11123687	C	T	c	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	108584199	108584200	chr2:108584200:T:C	rs2577625	T	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr2	108584208	108584209	chr2:108584209:T:G	rs72833160	T	G	T	Sox1_MA0870.1	30	0	+	0	0	.
chr2	108586648	108586649	chr2:108586649:G:T	rs3806527	G	T	G	Sox1_MA0870.1	0	1	-	5.685580693321494	6.921878041876475	CAGACTGGCATTGTT
chr2	108620612	108620613	chr2:108620613:C:G	rs1032304203	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	108927426	108927427	chr2:108927427:C:T	rs922452	C	T	C	Sox1_MA0870.1	7	1	+	4.289211692240459	4.277382639692085	CACCCTTCCAGTGTC
chr2	108974887	108974888	chr2:108974888:A:G	rs1983063	A	G	A	Sox1_MA0870.1	9	1	+	3.5206290030212273	-3.3881257762939927	AACACTTGCAGTCTG
chr2	109132846	109132847	chr2:109132847:G:A	rs6740122	G	A	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	109149226	109149227	chr2:109149227:G:C	rs6705120	G	C	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	109149262	109149263	chr2:109149263:C:T	rs570955965	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr2	109243062	109243063	chr2:109243063:C:A	rs1864474	C	A	A	Sox1_MA0870.1	3	1	-	4.296538986106945	5.682833347226834	GCCGATTTCATTGTT
chr2	109380429	109380430	chr2:109380430:T:G	rs112507081	T	G	T	Sox1_MA0870.1	4	1	-	8.638924421118517	6.6821114864933	CCCAATAACATTGCA
chr2	109402496	109402497	chr2:109402497:G:A	rs59333879	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	109451534	109451535	chr2:109451535:T:G	rs551558452	T	G	T	Sox1_MA0870.1	34	0	+	0	0	.
chr2	109644441	109644442	chr2:109644442:G:T	rs62151702	G	T	G	Sox1_MA0870.1	8	1	-	6.533750544932276	0.640580890614062	TTCAATACCATTGGA
chr2	109644447	109644448	chr2:109644448:G:A	rs56840594	G	A	G	Sox1_MA0870.1	2	1	-	6.533750544932276	-0.3750042343829443	TTCAATACCATTGGA
chr2	109663009	109663010	chr2:109663010:C:A	rs74805476	C	A	C	Sox1_MA0870.1	34	0	+	0	0	.
chr2	109706246	109706247	chr2:109706247:G:T	rs11682853	G	T	.	Sox1_MA0870.1	6	1	+	3.513515416537961	4.079073393964378	CACACCGGCATTGCT
chr2	110212513	110212514	chr2:110212514:C:T	chr2:110212514:C:T	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr2	110212520	110212521	chr2:110212521:G:A	rs191502224	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr2	110390772	110390773	chr2:110390773:C:T	rs1193545099	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr2	110728179	110728180	chr2:110728180:T:C	rs56146538	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	110948160	110948161	chr2:110948161:G:A	rs729386	G	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr2	111179409	111179410	chr2:111179410:A:G	rs78945139	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr2	111205974	111205975	chr2:111205975:T:C	rs77014918	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr2	111206012	111206013	chr2:111206013:G:C	rs7600458	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	111236048	111236049	chr2:111236049:C:T	rs17041943	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	111512620	111512621	chr2:111512621:T:C	rs11686057	T	C	T	Sox1_MA0870.1	3	1	+	4.653716994847323	5.0822473758864835	AACTATGCCAGTGAT
chr2	111608281	111608282	chr2:111608282:T:C	rs375642853	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr2	111834217	111834218	chr2:111834218:C:T	rs75031626	C	T	c	Sox1_MA0870.1	25	0	-	0	0	.
chr2	111834262	111834263	chr2:111834263:A:G	rs11674974	A	G	a	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	112192135	112192136	chr2:112192136:G:A	rs12620553	G	A	A	Sox1_MA0870.1	20	0	+	0	0	.
chr2	112301028	112301029	chr2:112301029:G:A	rs62160168	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	113067507	113067508	chr2:113067508:T:C	rs7599662	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	113119201	113119202	chr2:113119202:G:A	rs2637988	G	A	G	Sox1_MA0870.1	2	1	-	4.486905984217389	-2.4218487950978322	GACACTTCCACTGTG
chr2	113351801	113351802	chr2:113351802:C:T	rs1867866	C	T	.	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	113697752	113697753	chr2:113697753:A:G	rs78460688	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr2	113847576	113847577	chr2:113847577:T:C	rs4849293	T	C	T	Sox1_MA0870.1	9	1	-	7.171829338232138	0.26307455891691756	AACAATAGCAATGAT
chr2	113859193	113859194	chr2:113859194:T:G	rs114331701	T	G	T	Sox1_MA0870.1	26	0	+	0	0	.
chr2	114075487	114075488	chr2:114075488:T:C	rs172115	T	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr2	114709955	114709956	chr2:114709956:T:C	rs1898132	T	C	C	Sox1_MA0870.1	11	1	-	3.9954316942558687	3.9954316942558687	GACCATAGCATAGTT
chr2	115185055	115185056	chr2:115185056:T:C	rs1543147	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr2	115473498	115473499	chr2:115473499:T:C	rs10496492	T	C	T	Sox1_MA0870.1	11	1	+	4.835789548325136	-0.11960543748519703	CCCAATTACATTCTT
chr2	116719423	116719424	chr2:116719424:C:T	rs1810292	C	T	C	Sox1_MA0870.1	7	1	+	5.680395482241273	5.6685664296929	CACACTACCATTATC
chr2	116935733	116935734	chr2:116935734:A:G	rs150314834	A	G	A	Sox1_MA0870.1	14	1	-	3.911111238791158	2.400101834309753	AACAAGAACATTTTT
chr2	117661330	117661331	chr2:117661331:C:T	rs10864958	C	T	C	Sox1_MA0870.1	8	1	-	4.87597249444863	2.7533058330307534	GACAATTTGAGTGCA
chr2	117661354	117661355	chr2:117661355:G:A	rs78665852	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	117727017	117727018	chr2:117727018:C:T	rs17498503	C	T	C	Sox1_MA0870.1	12	1	-	7.5219840231059045	0.6132292437906844	ATCAATGCCATCGTT
chr2	117812696	117812697	chr2:117812697:G:A	rs17567144	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	118044515	118044516	chr2:118044516:G:C	rs78504488	G	C	G	Sox1_MA0870.1	10	1	+	3.6561531060347288	-0.911419049538044	GACAAGTCCAGTGCT
chr2	118080704	118080705	chr2:118080705:A:G	rs2161830	A	G	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	118256149	118256150	chr2:118256150:C:G	rs115174928	C	G	C	Sox1_MA0870.1	32	0	+	0	0	.
chr2	118490412	118490413	chr2:118490413:C:G	rs11686428	C	G	-	Sox1_MA0870.1	25	0	-	0	0	.
chr2	118843350	118843351	chr2:118843351:C:T	rs927293003	C	T	C	Sox1_MA0870.1	14	1	+	5.386509824903257	6.897519229384661	GAGAATAGCATTGCC
chr2	118893337	118893338	chr2:118893338:T:C	rs10187538	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr2	118948408	118948409	chr2:118948409:A:G	rs1813638	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	118953177	118953178	chr2:118953178:A:G	rs60188827	A	G	-	Sox1_MA0870.1	1	1	+	7.125611295506518	3.027320640113377	AACAATAACATTTCC
chr2	119229777	119229778	chr2:119229778:G:T	rs708672	G	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr2	119269609	119269610	chr2:119269610:T:A	rs6730921	T	A	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	119274439	119274440	chr2:119274440:A:G	rs187218529	A	G	A	Sox1_MA0870.1	10	1	-	5.280870807451755	-1.527826276684578	AACAATGAGATCGCT
chr2	119280979	119280980	chr2:119280980:C:A	rs12996784	C	A	C	Sox1_MA0870.1	7	1	-	4.778060879871855	4.7334493275839495	AACCCTGGCAGTGTG
chr2	119407990	119407991	chr2:119407991:G:A	rs774476005	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	119408025	119408026	chr2:119408026:T:A	rs79409005	T	A	T	Sox1_MA0870.1	15	0	+	0	0	.
chr2	119759960	119759961	chr2:119759961:C:T	rs1018960585	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	119760001	119760002	chr2:119760002:C:T	rs867439834	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr2	120241866	120241867	chr2:120241867:T:C	rs181640600	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr2	120265163	120265164	chr2:120265164:G:T	rs7587975	G	T	T	Sox1_MA0870.1	4	1	-	12.049955851537208	14.006768786162425	AACACTGACATTGCT
chr2	120398036	120398037	chr2:120398037:G:A	rs138520244	G	A	G	Sox1_MA0870.1	6	1	+	4.771891200282777	6.310497893423495	AACCATGGCAGTGCC
chr2	120653309	120653310	chr2:120653310:C:G	rs80281934	C	G	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	120710082	120710083	chr2:120710083:G:A	rs921502	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	120771320	120771321	chr2:120771321:G:C	rs12464053	G	C	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr2	120771332	120771333	chr2:120771333:C:T	rs75854441	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	120818528	120818529	chr2:120818529:G:A	rs77556830	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	120885298	120885299	chr2:120885299:G:C	rs113965320	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	121092307	121092308	chr2:121092308:C:T	rs76805213	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr2	121869056	121869057	chr2:121869057:T:C	rs62152385	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr2	122947742	122947743	chr2:122947743:G:T	rs17008966	G	T	g	Sox1_MA0870.1	34	0	-	0	0	.
chr2	123826236	123826237	chr2:123826237:T:G	rs10198263	T	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	124080599	124080600	chr2:124080600:T:C	rs72844498	T	C	T	Sox1_MA0870.1	10	1	+	5.276959428341193	-1.5317376557951405	TCCAATTGCATTGGG
chr2	124257381	124257382	chr2:124257382:G:A	rs1186396	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	124267893	124267894	chr2:124267894:T:C	rs62173768	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr2	124836400	124836401	chr2:124836401:T:G	rs146753867	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	125717153	125717154	chr2:125717154:T:C	rs13034852	T	C	T	Sox1_MA0870.1	13	1	+	4.792059064220681	2.6144037667696876	GTCAATTCCATTTTT
chr2	126368458	126368459	chr2:126368459:C:A	rs17013747	C	A	C	Sox1_MA0870.1	12	1	-	4.695173404727706	-2.213581374587514	TACACAGGCATTGCT
chr2	126369644	126369645	chr2:126369645:A:G	rs17013755	A	G	A	Sox1_MA0870.1	3	1	+	9.009867501646724	2.1092778344494985	AACATTGGCATTGTT
chr2	126809569	126809570	chr2:126809570:C:T	rs77746072	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr2	126915621	126915622	chr2:126915622:G:C	rs10928995	G	C	g	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	127014723	127014724	chr2:127014724:C:T	chr2:127014724:C:T	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr2	127084806	127084807	chr2:127084807:C:T	rs11691237	C	T	C	Sox1_MA0870.1	3	1	+	3.914850351990342	3.4863199709511807	GCCCATTGCAGTGTT
chr2	127109597	127109598	chr2:127109598:A:C	rs9653203	A	C	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	127137723	127137724	chr2:127137724:A:G	rs11899744	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	127199235	127199236	chr2:127199236:G:A	rs4273176	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	127255927	127255928	chr2:127255928:C:T	rs4662717	C	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr2	127453597	127453598	chr2:127453598:A:G	rs13383674	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr2	127564271	127564272	chr2:127564272:T:C	rs183069592	T	C	T	Sox1_MA0870.1	3	1	-	3.630191667740584	-3.270397999456643	AACACTGACCTTGCC
chr2	127708282	127708283	chr2:127708283:T:C	rs77665538	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr2	127858539	127858540	chr2:127858540:G:A	chr2:127858540:G:A	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	128362257	128362258	chr2:128362258:A:C	rs28616296	A	C	A	Sox1_MA0870.1	1	1	+	4.9211063431207025	1.1519659582762047	AAAAATAAAATTGTT
chr2	128410682	128410683	chr2:128410683:C:T	rs10205190	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	128464611	128464612	chr2:128464612:T:C	rs113773226	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	128633667	128633668	chr2:128633668:A:G	rs75454406	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr2	128752662	128752663	chr2:128752663:T:C	rs1316511	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr2	128782518	128782519	chr2:128782519:T:C	rs7425326	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr2	128785843	128785844	chr2:128785844:G:A	rs149739593	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr2	128813807	128813808	chr2:128813808:G:A	rs6710277	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	128885334	128885335	chr2:128885335:A:G	rs13034252	A	G	A	Sox1_MA0870.1	5	1	-	5.985684755634227	-0.9174800030135325	CACAATTTCATTTCT
chr2	129248189	129248190	chr2:129248190:T:A	rs7591211	T	A	T	Sox1_MA0870.1	4	1	+	6.065220702215067	12.842798956385254	CACATTTCCAGTGTT
chr2	129254628	129254629	chr2:129254629:A:G	rs837832	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	129481694	129481695	chr2:129481695:T:C	rs62157324	T	C	T	Sox1_MA0870.1	13	1	+	5.512725360168664	3.335070062717671	ATCATTACCATTGTG
chr2	129676084	129676085	chr2:129676085:T:C	rs3109281	T	C	T	Sox1_MA0870.1	1	1	-	6.030296307922135	1.9320056525289924	CACAATTGCATTCCT
chr2	129885004	129885005	chr2:129885005:T:G	rs10928936	T	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr2	129911309	129911310	chr2:129911310:T:A	rs34750135	T	A	T	Sox1_MA0870.1	9	1	-	6.754053555959841	-0.15470122335537895	AACACTTCCAGTGGG
chr2	130293901	130293902	chr2:130293902:T:G	rs938867	T	G	G	Sox1_MA0870.1	19	0	-	0	0	.
chr2	130345275	130345276	chr2:130345276:A:C	rs115373307	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	130355347	130355348	chr2:130355348:G:A	rs115321383	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr2	130802470	130802471	chr2:130802471:A:G	rs2403235	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	131094266	131094267	chr2:131094267:C:T	rs775843456	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr2	131400252	131400253	chr2:131400253:C:T	rs114686426	C	T	C	Sox1_MA0870.1	2	1	+	3.187166961762244	-3.721587817552975	CACGATGTCAGTGCT
chr2	131628475	131628476	chr2:131628476:G:C	rs11677832	G	C	.	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	132860989	132860990	chr2:132860990:G:T	rs1447546	G	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr2	132974856	132974857	chr2:132974857:A:T	rs893410	A	T	T	Sox1_MA0870.1	24	0	+	0	0	.
chr2	133232763	133232764	chr2:133232764:T:C	rs6756852	T	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr2	133557825	133557826	chr2:133557826:A:G	rs2278849	A	G	A	Sox1_MA0870.1	11	1	-	3.6506104203018013	-1.3047845655085324	GACCCTGGCAGTGTC
chr2	133718138	133718139	chr2:133718139:C:T	rs72843245	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr2	133777834	133777835	chr2:133777835:C:T	rs1446744	C	T	T	Sox1_MA0870.1	12	1	-	6.086772584682542	-0.8219821946326779	TCCAATTACATCGTT
chr2	133805904	133805905	chr2:133805905:C:T	rs16829491	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr2	133821690	133821691	chr2:133821691:T:G	rs79854988	T	G	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	133975276	133975277	chr2:133975277:G:A	rs12470618	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr2	134073546	134073547	chr2:134073547:C:A	rs1257370	C	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	134261225	134261226	chr2:134261226:A:G	rs3828175	A	G	A	Sox1_MA0870.1	10	1	-	5.92050051680692	-0.8881965673294135	GACAATCACATTGAG
chr2	134274562	134274563	chr2:134274563:C:T	rs747618	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	134376165	134376166	chr2:134376166:G:C	rs4954138	G	C	G	Sox1_MA0870.1	8	1	-	4.7897009096631145	1.019197916762777	AACACAGACAGTGCT
chr2	134421138	134421139	chr2:134421139:A:T	rs13024607	A	T	A	Sox1_MA0870.1	25	0	-	0	0	.
chr2	134421165	134421166	chr2:134421166:C:T	rs12473441	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	134455247	134455248	chr2:134455248:A:G	rs544050	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	134774586	134774587	chr2:134774587:C:T	rs6760245	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	134786013	134786014	chr2:134786014:T:C	rs4953933	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr2	134819435	134819436	chr2:134819436:C:T	rs528057422	C	T	C	Sox1_MA0870.1	2	1	+	8.772465184812834	1.863710405497613	AACCCTAGCATTGTC
chr2	135037872	135037873	chr2:135037873:C:T	rs10167901	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr2	135926740	135926741	chr2:135926741:C:T	rs116190965	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr2	136025598	136025599	chr2:136025599:A:G	rs6714750	A	G	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	136236347	136236348	chr2:136236348:A:G	rs10183863	A	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr2	136236395	136236396	chr2:136236396:G:A	rs75340150	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	136297810	136297811	chr2:136297811:T:C	rs4325815	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr2	136311358	136311359	chr2:136311359:C:T	rs79611659	C	T	C	Sox1_MA0870.1	8	1	+	5.429120184092545	1.2475106374552616	AACAATACCATCCTT
chr2	136324096	136324097	chr2:136324097:C:T	rs68190334	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr2	136801726	136801727	chr2:136801727:T:C	rs12614492	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr2	137023479	137023480	chr2:137023480:A:T	rs13411176	A	T	A	Sox1_MA0870.1	32	0	-	0	0	.
chr2	137199053	137199054	chr2:137199054:G:T	rs12998376	G	T	G	Sox1_MA0870.1	13	1	-	3.7302727852336557	2.5624020560954905	TACACTAGGAGTGCC
chr2	137208883	137208884	chr2:137208884:G:A	rs13404985	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr2	137208893	137208894	chr2:137208894:T:C	rs13396104	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr2	137354158	137354159	chr2:137354159:A:G	rs10172370	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	137787334	137787335	chr2:137787335:G:A	rs11904824	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	137791342	137791343	chr2:137791343:C:T	rs62166462	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr2	137812940	137812941	chr2:137812941:A:G	rs10204750	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	137948070	137948071	chr2:137948071:T:C	rs966573	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr2	138058719	138058720	chr2:138058720:G:A	rs1455151	G	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr2	138425642	138425643	chr2:138425643:C:G	rs75529043	C	G	C	Sox1_MA0870.1	34	0	-	0	0	.
chr2	138448282	138448283	chr2:138448283:C:T	rs4560178	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr2	138502792	138502793	chr2:138502793:C:G	chr2:138502793:C:G	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr2	139918915	139918916	chr2:139918916:G:T	rs1401940	G	T	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	140023926	140023927	chr2:140023927:G:C	rs12618840	G	C	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	140210738	140210739	chr2:140210739:T:C	rs1008695	T	C	T	Sox1_MA0870.1	14	1	+	6.984084202241788	5.473074797760383	GACATTATCATTGCT
chr2	140270356	140270357	chr2:140270357:A:G	rs3748865	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	140442082	140442083	chr2:140442083:A:T	rs1878742	A	T	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	140540897	140540898	chr2:140540898:A:C	rs6729619	A	C	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	140604652	140604653	chr2:140604653:G:T	rs493102	G	T	T	Sox1_MA0870.1	7	1	-	4.866105994178175	5.295866821714216	ATGAATACCAGTGTT
chr2	140747819	140747820	chr2:140747820:T:C	rs2218241	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr2	141125636	141125637	chr2:141125637:G:A	rs10179688	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr2	141228851	141228852	chr2:141228852:C:G	rs10188773	C	G	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	141322054	141322055	chr2:141322055:A:T	rs111739657	A	T	A	Sox1_MA0870.1	1	1	+	6.061319802854072	2.7840355556929324	AACAGTGACATTGAT
chr2	141330623	141330624	chr2:141330624:G:T	rs111464452	G	T	G	Sox1_MA0870.1	8	1	-	12.633652657886381	6.740483003568169	TACAATTACATTGCT
chr2	141557336	141557337	chr2:141557337:A:C	rs74600857	A	C	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	141557382	141557383	chr2:141557383:G:T	rs6747911	G	T	G	Sox1_MA0870.1	30	0	+	0	0	.
chr2	141595332	141595333	chr2:141595333:G:A	rs72855461	G	A	G	Sox1_MA0870.1	8	1	-	10.657149281414293	6.47553973477701	CACAATTACATTGAC
chr2	141728831	141728832	chr2:141728832:A:G	rs2164694	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr2	141887565	141887566	chr2:141887566:A:G	rs13429414	A	G	A	Sox1_MA0870.1	4	1	+	5.610273055347316	-1.1673051988228724	AACAATTAAATTGAA
chr2	141889972	141889973	chr2:141889973:C:T	rs546297728	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	141889974	141889975	chr2:141889975:T:C	rs7590166	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	142037148	142037149	chr2:142037149:A:G	rs11677303	A	G	G	Sox1_MA0870.1	10	1	-	3.812770506732253	-2.995926577404081	CACAATAGCCTTGGG
chr2	142037177	142037178	chr2:142037178:A:T	rs143516368	A	T	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	143262325	143262326	chr2:143262326:A:G	rs147469234	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr2	143435413	143435414	chr2:143435414:G:A	rs2271773	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	143442398	143442399	chr2:143442399:T:C	rs72853732	T	C	T	Sox1_MA0870.1	11	1	+	3.3653811639369686	-1.5900138218733653	CCCAGTAGCATTGCT
chr2	143481733	143481734	chr2:143481734:G:A	rs10048736	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	143511835	143511836	chr2:143511836:C:A	rs12691681	C	A	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	143730339	143730340	chr2:143730340:A:G	rs533744335	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	144540755	144540756	chr2:144540756:T:G	rs17689833	T	G	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	144824534	144824535	chr2:144824535:G:A	rs12165166	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	145117482	145117483	chr2:145117483:A:G	rs17408824	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	146244829	146244830	chr2:146244830:C:A	rs2194682	C	A	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	146321329	146321330	chr2:146321330:T:C	chr2:146321330:T:C	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr2	147278575	147278576	chr2:147278576:T:G	chr2:147278576:T:G	T	G	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	147398642	147398643	chr2:147398643:A:G	rs16827314	A	G	A	Sox1_MA0870.1	1	1	+	4.5167578688218315	0.418467213428689	GACAATAACATCTTT
chr2	147425097	147425098	chr2:147425098:T:C	rs12624284	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	147430653	147430654	chr2:147430654:C:T	rs76689898	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr2	147525209	147525210	chr2:147525210:T:C	rs11695576	T	C	T	Sox1_MA0870.1	10	1	+	6.0885811135763905	-0.720115970559943	CACACTGACATAGTT
chr2	147623459	147623460	chr2:147623460:C:T	rs114651922	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	147660675	147660676	chr2:147660676:T:C	rs12471426	T	C	T	Sox1_MA0870.1	10	1	+	6.493134050308898	-0.31556303382743545	AACACTTCTATTGCC
chr2	147914450	147914451	chr2:147914451:C:T	rs3768687	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr2	147945740	147945741	chr2:147945741:C:T	rs1531032	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr2	148416433	148416434	chr2:148416434:C:T	rs1195751323	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	148993276	148993277	chr2:148993277:T:A	rs79879193	T	A	T	Sox1_MA0870.1	5	1	+	3.7990779294152355	-1.2200520838952982	GACACTGACTTTGCT
chr2	149063373	149063374	chr2:149063374:T:C	rs11682788	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	149288864	149288865	chr2:149288865:C:T	rs4667340	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	149473291	149473292	chr2:149473292:T:C	rs1196667	T	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	149687520	149687521	chr2:149687521:C:A	rs12233106	C	A	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	149813706	149813707	chr2:149813707:C:T	rs17433263	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr2	149989790	149989791	chr2:149989791:G:T	rs78882373	G	T	G	Sox1_MA0870.1	23	0	-	0	0	.
chr2	149989805	149989806	chr2:149989806:G:A	rs79794679	G	A	G	Sox1_MA0870.1	8	1	-	4.548184831955825	0.36657528531854267	GGCAATTTCAGTGCA
chr2	149989831	149989832	chr2:149989832:C:T	rs1437946	C	T	c	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	150064576	150064577	chr2:150064577:A:G	rs330616	A	G	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	150066341	150066342	chr2:150066342:T:C	rs330613	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	150157085	150157086	chr2:150157086:T:C	rs76850333	T	C	T	Sox1_MA0870.1	4	1	+	4.586187678495673	9.406952998040644	AACATTAATATTGCT
chr2	150374362	150374363	chr2:150374363:A:G	rs2197110	A	G	A	Sox1_MA0870.1	3	1	+	6.262326728300073	-0.6382629388971528	CACAATTTCTTTGTA
chr2	150374828	150374829	chr2:150374829:T:C	chr2:150374829:T:C	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	150374862	150374863	chr2:150374863:A:G	rs1348215	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr2	150417563	150417564	chr2:150417564:C:T	rs1166855	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr2	150526755	150526756	chr2:150526756:T:C	rs574843731	T	C	T	Sox1_MA0870.1	13	1	-	7.468749970849759	7.171728270801845	AACAATAACATTTAT
chr2	150625486	150625487	chr2:150625487:A:G	rs80223372	A	G	A	Sox1_MA0870.1	9	1	+	6.141585577790732	-0.7671692015244886	GACCATAACATTGGC
chr2	150639182	150639183	chr2:150639183:C:T	rs2341081	C	T	T	Sox1_MA0870.1	7	1	-	4.565403878736055	4.962382206532563	CACAATTGCATTTGT
chr2	150735799	150735800	chr2:150735800:G:A	rs16828597	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr2	150814368	150814369	chr2:150814369:C:G	rs1519776	C	G	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	150888291	150888292	chr2:150888292:C:T	rs78904109	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	151107207	151107208	chr2:151107208:G:A	rs11889500	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr2	151638746	151638747	chr2:151638747:C:G	rs889976770	C	G	C	Sox1_MA0870.1	12	1	-	5.168813877184942	-1.7399409021302792	TTCACTTTCAGTGTG
chr2	151729678	151729679	chr2:151729679:T:C	rs77846253	T	C	T	Sox1_MA0870.1	10	1	+	4.37846126283292	-2.430235821303414	CACAAAGGCATTGGC
chr2	151851841	151851842	chr2:151851842:C:T	rs72868013	C	T	c	Sox1_MA0870.1	17	0	+	0	0	.
chr2	151931946	151931947	chr2:151931947:A:C	rs16830457	A	C	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	152415680	152415681	chr2:152415681:A:T	rs73967990	A	T	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	152514956	152514957	chr2:152514957:C:A	rs12612608	C	A	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	152549691	152549692	chr2:152549692:A:T	rs116727388	A	T	A	Sox1_MA0870.1	5	1	-	7.909762525454445	2.8906325121439114	CACCATGTCATTGTC
chr2	152769950	152769951	chr2:152769951:A:G	rs1813748	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr2	152880555	152880556	chr2:152880556:A:C	rs17543335	A	C	A	Sox1_MA0870.1	16	0	-	0	0	.
chr2	153223327	153223328	chr2:153223328:T:C	rs13021536	T	C	T	Sox1_MA0870.1	0	1	-	5.915078914304786	4.572955771498033	ATCAATTTGATTGAT
chr2	153844466	153844467	chr2:153844467:A:C	rs9808037	A	C	A	Sox1_MA0870.1	9	1	+	5.353556104043969	-1.5551986752712517	AACAAAATCATTCTT
chr2	153844475	153844476	chr2:153844476:T:C	rs9808067	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr2	154138027	154138028	chr2:154138028:T:G	rs1345948	T	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr2	154402378	154402379	chr2:154402379:T:C	rs551618021	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr2	154760179	154760180	chr2:154760180:T:G	rs2961962	T	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	155215541	155215542	chr2:155215542:A:C	rs189724230	A	C	A	Sox1_MA0870.1	9	1	+	6.37644372340325	-0.53231105591197	GATAATTGCATTGTG
chr2	155609234	155609235	chr2:155609235:C:A	rs80153284	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	155965645	155965646	chr2:155965646:G:A	rs113777447	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr2	156380466	156380467	chr2:156380467:C:T	rs79853719	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr2	156380468	156380469	chr2:156380469:C:T	rs78734358	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr2	156931751	156931752	chr2:156931752:T:C	rs73013794	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr2	156970971	156970972	chr2:156970972:G:A	rs7591639	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr2	157160397	157160398	chr2:157160398:G:A	rs7596456	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr2	157477507	157477508	chr2:157477508:T:C	rs145203333	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	157848604	157848605	chr2:157848605:G:A	rs7563276	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	158346322	158346323	chr2:158346323:G:C	rs2883853	G	C	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	158461043	158461044	chr2:158461044:G:A	rs73966671	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	158471422	158471423	chr2:158471423:A:G	rs6711582	A	G	A	Sox1_MA0870.1	7	1	+	11.468469663658096	11.071491335861587	AACAATTAGATTGTC
chr2	158560447	158560448	chr2:158560448:A:G	rs72936958	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	159032238	159032239	chr2:159032239:C:T	rs73969421	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	159138027	159138028	chr2:159138028:C:T	rs113890034	C	T	C	Sox1_MA0870.1	13	1	-	3.812105792926285	4.109127492974198	AACACTTCCATTCGT
chr2	159284938	159284939	chr2:159284939:G:A	rs73968311	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	159449751	159449752	chr2:159449752:C:T	rs4142233	C	T	T	Sox1_MA0870.1	26	0	+	0	0	.
chr2	159576175	159576176	chr2:159576176:T:A	rs9973341	T	A	A	Sox1_MA0870.1	10	1	+	4.620797304529584	-2.187899779606749	TACACTAGCTTTGTA
chr2	159735698	159735699	chr2:159735699:A:G	rs6432557	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr2	159738371	159738372	chr2:159738372:A:G	rs35551189	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr2	159738379	159738380	chr2:159738380:A:G	rs10166694	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr2	159851934	159851935	chr2:159851935:C:A	rs2556086	C	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr2	159856934	159856935	chr2:159856935:C:A	rs11675122	C	A	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	159961218	159961219	chr2:159961219:C:A	rs59062448	C	A	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	159974751	159974752	chr2:159974752:A:G	rs7584941	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	160037520	160037521	chr2:160037521:G:T	rs74457992	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	160705335	160705336	chr2:160705336:C:T	rs896483	C	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	160964188	160964189	chr2:160964189:G:T	rs74610221	G	T	G	Sox1_MA0870.1	2	1	-	3.6478845275902163	-3.260870251725004	AACGTTAGCATTGTT
chr2	160970692	160970693	chr2:160970693:G:T	rs1722656	G	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr2	161374008	161374009	chr2:161374009:T:G	rs6719721	T	G	G	Sox1_MA0870.1	5	1	+	5.125002265610837	-1.7781624930369229	GCCAATGAGATTGCT
chr2	161788758	161788759	chr2:161788759:G:A	rs62190667	G	A	G	Sox1_MA0870.1	8	1	-	3.8902592949017456	-0.2913502517355371	CAGAATGGCAGTGTC
chr2	161946999	161947000	chr2:161947000:A:T	rs2222057	A	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr2	162100732	162100733	chr2:162100733:A:C	chr2:162100733:A:C	A	C	A	Sox1_MA0870.1	27	0	-	0	0	.
chr2	162267643	162267644	chr2:162267644:C:A	rs3761652	C	A	C	Sox1_MA0870.1	34	0	+	0	0	.
chr2	162587498	162587499	chr2:162587499:C:T	rs1385865	C	T	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	163056082	163056083	chr2:163056083:C:T	rs7592618	C	T	C	Sox1_MA0870.1	0	1	+	11.76155037943989	11.05917362229241	CACAATTACAGTGTC
chr2	163249081	163249082	chr2:163249082:G:A	rs78467192	G	A	G	Sox1_MA0870.1	12	1	+	8.175555246622158	1.2668004673069393	CACACTGGCAGTGCT
chr2	163487185	163487186	chr2:163487186:T:G	rs1156931	T	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr2	163605191	163605192	chr2:163605192:T:C	chr2:163605192:T:C	T	C	T	Sox1_MA0870.1	1	1	-	6.2079712476731705	2.1096805922800295	AACACAAGCAGTGTA
chr2	163630937	163630938	chr2:163630938:C:T	rs115118192	C	T	C	Sox1_MA0870.1	13	1	+	8.316899401723328	10.494554699174323	CACAAATACATTGCT
chr2	163737443	163737444	chr2:163737444:G:T	chr2:163737444:G:T	G	T	G	Sox1_MA0870.1	19	0	+	0	0	.
chr2	164109612	164109613	chr2:164109613:C:T	rs140216863	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	164191567	164191568	chr2:164191568:C:A	rs10204551	C	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	164762652	164762653	chr2:164762653:T:G	rs355838	T	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr2	164843093	164843094	chr2:164843094:C:T	rs3806544	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	164843368	164843369	chr2:164843369:T:C	rs355824	T	C	T	Sox1_MA0870.1	11	1	+	4.005578913302584	-0.9498160725077499	AACAATAACTCTGTT
chr2	164917543	164917544	chr2:164917544:T:C	rs188716696	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr2	164945994	164945995	chr2:164945995:C:T	rs16849964	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	165009721	165009722	chr2:165009722:T:G	rs6708616	T	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	165116359	165116360	chr2:165116360:A:G	rs10930150	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr2	165142090	165142091	chr2:165142091:C:G	rs78969510	C	G	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	165602085	165602086	chr2:165602086:T:A	rs73029859	T	A	t	Sox1_MA0870.1	34	0	-	0	0	.
chr2	165637478	165637479	chr2:165637479:A:T	rs150701870	A	T	A	Sox1_MA0870.1	33	0	+	0	0	.
chr2	165746749	165746750	chr2:165746750:C:T	rs73017446	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	165836175	165836176	chr2:165836176:T:A	rs6742727	T	A	A	Sox1_MA0870.1	13	1	+	5.62725237490606	2.281726348316901	TGCCATTACATTGTT
chr2	165844428	165844429	chr2:165844429:A:G	rs16851139	A	G	A	Sox1_MA0870.1	6	1	-	5.395194746214008	0.979044459095106	TACAATTCCACTGCT
chr2	166014143	166014144	chr2:166014144:G:C	rs10207252	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	166048969	166048970	chr2:166048970:G:A	rs994399	G	A	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	166336601	166336602	chr2:166336602:C:T	rs72884732	C	T	C	Sox1_MA0870.1	7	1	-	7.4027447533467665	7.799723081143275	GACCCTGGCATTGTT
chr2	166996707	166996708	chr2:166996708:T:C	rs116531315	T	C	T	Sox1_MA0870.1	0	1	+	7.990173691948315	8.692550449095794	TACAATAAAATTGTA
chr2	167924127	167924128	chr2:167924128:T:C	rs13410459	T	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr2	168114603	168114604	chr2:168114604:C:T	rs1813140	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr2	168114628	168114629	chr2:168114629:G:A	rs1813141	G	A	A	Sox1_MA0870.1	2	1	-	11.267238808205153	4.358484028889934	AACCATTGCATTGTT
chr2	168221251	168221252	chr2:168221252:G:A	rs772884269	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr2	168222379	168222380	chr2:168222380:T:G	rs1807984	T	G	T	Sox1_MA0870.1	12	1	+	6.166964706766969	13.075719486082189	ATCAATTGCATTTTT
chr2	168420976	168420977	chr2:168420977:A:C	rs2601084	A	C	A	Sox1_MA0870.1	33	0	-	0	0	.
chr2	168519011	168519012	chr2:168519012:C:T	rs13413079	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr2	168633862	168633863	chr2:168633863:A:T	rs10200509	A	T	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	168661874	168661875	chr2:168661875:T:A	rs13384233	T	A	T	Sox1_MA0870.1	3	1	-	5.15735400014857	-0.3569413059287656	TGCACTACCAGTGTA
chr2	168671954	168671955	chr2:168671955:A:T	rs11687166	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr2	168672115	168672116	chr2:168672116:G:A	rs73970096	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	169036812	169036813	chr2:169036813:C:A	rs143627656	C	A	C	Sox1_MA0870.1	2	1	+	3.897171148111239	-3.01158363120398	AACTATTCCTTTGTT
chr2	169116025	169116026	chr2:169116026:T:C	rs2389598	T	C	C	Sox1_MA0870.1	13	1	+	4.188779646050734	2.0111243485997403	CACAATCACCTTGTT
chr2	169468936	169468937	chr2:169468937:T:C	rs74946619	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr2	169470034	169470035	chr2:169470035:C:A	rs73037933	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr2	169508001	169508002	chr2:169508002:A:G	rs80090638	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr2	169815955	169815956	chr2:169815956:G:C	rs115193235	G	C	G	Sox1_MA0870.1	30	0	+	0	0	.
chr2	169824323	169824324	chr2:169824324:T:G	chr2:169824324:T:G	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	169925827	169925828	chr2:169925828:C:T	rs13016918	C	T	A	Sox1_MA0870.1	31	0	-	0	0	.
chr2	169925845	169925846	chr2:169925846:C:T	rs61092155	C	T	C	Sox1_MA0870.1	13	1	-	5.417930271834834	5.714951971882748	TTCAATGGCATTGGC
chr2	170283151	170283152	chr2:170283152:C:T	rs12612480	C	T	T	Sox1_MA0870.1	32	0	-	0	0	.
chr2	170441829	170441830	chr2:170441830:C:T	rs116020262	C	T	T	Sox1_MA0870.1	25	0	+	0	0	.
chr2	170508023	170508024	chr2:170508024:A:C	rs73975676	A	C	A	Sox1_MA0870.1	21	0	-	0	0	.
chr2	170766136	170766137	chr2:170766137:C:A	rs56852746	C	A	A	Sox1_MA0870.1	10	1	+	8.975659586915343	8.975659586915343	TACAATAACACTGTT
chr2	170813499	170813500	chr2:170813500:C:T	rs57026097	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	171107039	171107040	chr2:171107040:C:T	rs10207361	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	171317052	171317053	chr2:171317053:T:A	rs184215465	T	A	T	Sox1_MA0870.1	19	0	+	0	0	.
chr2	171383652	171383653	chr2:171383653:A:C	rs16859370	A	C	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	171403241	171403242	chr2:171403242:A:C	rs73022909	A	C	A	Sox1_MA0870.1	25	0	-	0	0	.
chr2	171490594	171490595	chr2:171490595:G:C	rs58182652	G	C	C	Sox1_MA0870.1	2	1	-	7.1439586336811045	0.23520385436588542	AACCATTTCATTGCA
chr2	171515927	171515928	chr2:171515928:G:A	rs62183547	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr2	171572218	171572219	chr2:171572219:G:A	rs2356791	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	171763470	171763471	chr2:171763471:A:G	rs112353909	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	171763491	171763492	chr2:171763492:A:G	rs139137091	A	G	A	Sox1_MA0870.1	9	1	+	7.212664959795378	0.3039101804801567	GACAAAAGCAGTGTC
chr2	171810608	171810609	chr2:171810609:C:T	rs114750605	C	T	c	Sox1_MA0870.1	16	0	+	0	0	.
chr2	171816942	171816943	chr2:171816943:G:A	rs6716901	G	A	g	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	171923621	171923622	chr2:171923622:T:C	rs10202823	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	172231882	172231883	chr2:172231883:C:T	rs10167005	C	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	172298851	172298852	chr2:172298852:A:G	rs13413724	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	172298853	172298854	chr2:172298854:G:A	rs72882644	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	172497027	172497028	chr2:172497028:G:A	rs772982880	G	A	G	Sox1_MA0870.1	14	1	-	7.125611295506518	8.636620699987922	AACAATAACATTTCC
chr2	172561557	172561558	chr2:172561558:G:A	rs6728257	G	A	G	Sox1_MA0870.1	13	1	-	3.13673718080902	5.3143924782600145	TACAATGGCACTGCG
chr2	172639945	172639946	chr2:172639946:G:A	rs836624	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr2	172667921	172667922	chr2:172667922:C:T	rs78373236	C	T	C	Sox1_MA0870.1	2	1	+	5.626059229385836	-1.2826955499293846	TCCAAATGCATTGTT
chr2	173050278	173050279	chr2:173050279:G:A	rs4972527	G	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr2	173101911	173101912	chr2:173101912:G:A	rs76353190	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	173160205	173160206	chr2:173160206:C:G	rs188321068	C	G	C	Sox1_MA0870.1	12	1	-	4.53864347145491	-2.3701113078603098	CACAATTCCATAGGT
chr2	173347943	173347944	chr2:173347944:A:G	rs1560834	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	173392945	173392946	chr2:173392946:C:T	rs67304191	C	T	C	Sox1_MA0870.1	4	1	+	3.6118112949758006	-1.2089540245691706	ATCACTGCCCTTGTT
chr2	173574932	173574933	chr2:173574933:T:C	rs548652219	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	173576085	173576086	chr2:173576086:C:A	rs79237877	C	A	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	173581179	173581180	chr2:173581180:A:T	rs77886437	A	T	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr2	173709337	173709338	chr2:173709338:A:G	rs7572805	A	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr2	173750463	173750464	chr2:173750464:A:G	rs56350776	A	G	G	Sox1_MA0870.1	6	1	-	4.233470486356543	-0.1826798007623568	TCCAATTACAATGTT
chr2	173764321	173764322	chr2:173764322:A:G	rs79824576	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	173937271	173937272	chr2:173937272:T:C	rs6755295	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	174009588	174009589	chr2:174009589:T:C	rs147358705	T	C	T	Sox1_MA0870.1	6	1	-	9.544130887487722	8.005524194347004	AACAATATGAGTGTG
chr2	174009592	174009593	chr2:174009593:G:A	rs139948889	G	A	G	Sox1_MA0870.1	2	1	-	9.544130887487722	2.6353761081725007	AACAATATGAGTGTG
chr2	174039809	174039810	chr2:174039810:G:A	chr2:174039810:G:A	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr2	174050168	174050169	chr2:174050169:G:A	rs59012325	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr2	174389555	174389556	chr2:174389556:G:C	rs10180988	G	C	c	Sox1_MA0870.1	7	1	-	4.7813349272289365	4.814117426968469	CTCTATTCCATTGTC
chr2	174609441	174609442	chr2:174609442:G:A	rs73026164	G	A	G	Sox1_MA0870.1	1	1	-	4.126696040117329	4.618552177800687	ACCATTGACATTGTC
chr2	174701240	174701241	chr2:174701241:G:A	rs10930682	G	A	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	174749987	174749988	chr2:174749988:G:A	rs2229957	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr2	174798196	174798197	chr2:174798197:A:C	rs148091409	A	C	A	Sox1_MA0870.1	17	0	+	0	0	.
chr2	174998569	174998570	chr2:174998570:A:C	rs114010512	A	C	C	Sox1_MA0870.1	1	1	+	4.9774040345053185	1.2082636496608183	AACACTTTCAGCGCT
chr2	175070152	175070153	chr2:175070153:T:A	rs1153697	T	A	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	175616111	175616112	chr2:175616112:C:T	rs79101959	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	175890465	175890466	chr2:175890466:T:G	rs78426082	T	G	T	Sox1_MA0870.1	30	0	+	0	0	.
chr2	175984963	175984964	chr2:175984964:C:T	rs75727261	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	176013691	176013692	chr2:176013692:A:G	rs3099603	A	G	A	Sox1_MA0870.1	9	1	+	5.761673541940736	-1.147081237374485	ACCAGTTTCATTGTT
chr2	176205397	176205398	chr2:176205398:G:A	rs6749771	G	A	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	176270567	176270568	chr2:176270568:A:G	rs145057245	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr2	176319357	176319358	chr2:176319358:G:A	rs73036882	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr2	176734672	176734673	chr2:176734673:A:G	rs61370766	A	G	G	Sox1_MA0870.1	13	1	-	3.9229614968012765	1.7453061993502819	CACAAACCCATTGTG
chr2	176751487	176751488	chr2:176751488:A:G	rs4893916	A	G	A	Sox1_MA0870.1	10	1	-	4.074806106308877	-2.7338909778274556	CCCTATTCCATTGTG
chr2	176845829	176845830	chr2:176845830:G:A	rs1866132	G	A	A	Sox1_MA0870.1	20	0	+	0	0	.
chr2	176845834	176845835	chr2:176845835:T:G	rs1866133	T	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr2	177213274	177213275	chr2:177213275:C:T	rs1037658893	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr2	177213280	177213281	chr2:177213281:C:T	rs1056235695	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr2	177225132	177225133	chr2:177225133:G:A	rs2706112	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	177332289	177332290	chr2:177332290:A:G	rs11692099	A	G	G	Sox1_MA0870.1	11	1	-	5.157665060199868	0.20227007438953293	GACTCTAACAGTGTC
chr2	177622477	177622478	chr2:177622478:G:A	rs77212851	G	A	A	Sox1_MA0870.1	34	0	+	0	0	.
chr2	177626488	177626489	chr2:177626489:G:A	rs6723031	G	A	A	Sox1_MA0870.1	31	0	+	0	0	.
chr2	177663167	177663168	chr2:177663168:C:T	rs78447579	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	178089088	178089089	chr2:178089089:C:T	rs56103916	C	T	C	Sox1_MA0870.1	2	1	+	4.451287610258885	-2.4574671690563354	ACCACTACGATTGAT
chr2	178129107	178129108	chr2:178129108:G:A	rs77187337	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr2	178251380	178251381	chr2:178251381:C:T	rs115739852	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	178381052	178381053	chr2:178381053:T:G	rs73034339	T	G	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	178451975	178451976	chr2:178451976:A:G	rs764492133	A	G	A	Sox1_MA0870.1	5	1	-	4.922475197079807	-1.9806895615679507	ACGAATAGCATTGTG
chr2	178451995	178451996	chr2:178451996:T:C	rs78717143	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	178966008	178966009	chr2:178966009:G:A	rs78505469	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr2	179268411	179268412	chr2:179268412:T:G	rs76347893	T	G	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	179626860	179626861	chr2:179626861:T:A	rs36017881	T	A	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	179648076	179648077	chr2:179648077:A:G	rs10432487	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	179665199	179665200	chr2:179665200:A:G	rs3112970	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	179727563	179727564	chr2:179727564:A:G	rs116486951	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	180018200	180018201	chr2:180018201:G:A	rs80287113	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr2	180090635	180090636	chr2:180090636:T:C	rs6723904	T	C	T	Sox1_MA0870.1	9	1	-	5.6844501608908455	-1.224304618424376	ATCAATATCACTGTC
chr2	180130547	180130548	chr2:180130548:T:C	rs10497559	T	C	T	Sox1_MA0870.1	10	1	+	4.141909992713733	-2.6667870914226	AACACTTGCATTCAT
chr2	180494401	180494402	chr2:180494402:C:T	rs112997677	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr2	180541087	180541088	chr2:180541088:T:C	rs35482970	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr2	180547703	180547704	chr2:180547704:C:T	rs1490885649	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	180699957	180699958	chr2:180699958:A:C	rs35400381	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	180699980	180699981	chr2:180699981:C:T	rs4541218	C	T	C	Sox1_MA0870.1	8	1	+	3.0910272003992394	-1.0905823462380435	GACAATGCCAGGGCT
chr2	181197339	181197340	chr2:181197340:C:T	rs4233791	C	T	c	Sox1_MA0870.1	34	0	-	0	0	.
chr2	181306105	181306106	chr2:181306106:C:T	chr2:181306106:C:T	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	181426905	181426906	chr2:181426906:G:C	rs143947584	G	C	G	Sox1_MA0870.1	10	1	+	9.068443334276381	4.500871178703608	GGCAATTACAGTGTT
chr2	181443624	181443625	chr2:181443625:A:G	rs6740847	A	G	A	Sox1_MA0870.1	4	1	+	9.088593909720814	2.311015655550625	AACAATAACATTTTG
chr2	181463486	181463487	chr2:181463487:G:A	rs2124440	G	A	G	Sox1_MA0870.1	13	1	+	4.100952670771954	4.397974370819868	GGCAATAGCAGTGGA
chr2	181486584	181486585	chr2:181486585:C:A	rs155105	C	A	A	Sox1_MA0870.1	0	1	-	5.052678763783092	4.456127800887385	GTCAATATCAGTGGG
chr2	181851598	181851599	chr2:181851599:G:A	rs6718469	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	182164884	182164885	chr2:182164885:A:G	rs1196067	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	182505393	182505394	chr2:182505394:G:A	rs573750927	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	182528712	182528713	chr2:182528713:A:G	rs72890801	A	G	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	182893578	182893579	chr2:182893579:A:G	rs76322467	A	G	A	Sox1_MA0870.1	10	1	-	4.844601828792163	-1.964095255344171	CACCATTCCATTGGC
chr2	183163802	183163803	chr2:183163803:C:T	rs2887234	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	183284966	183284967	chr2:183284967:G:C	rs75168961	G	C	G	Sox1_MA0870.1	19	0	+	0	0	.
chr2	183488726	183488727	chr2:183488727:T:C	rs1992179	T	C	T	Sox1_MA0870.1	14	1	+	5.630497016795703	4.119487612314298	ACCAATTTCATTCTT
chr2	183740455	183740456	chr2:183740456:C:A	rs10206407	C	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	183740462	183740463	chr2:183740463:A:G	rs1454058	A	G	G	Sox1_MA0870.1	3	1	+	3.450813835153317	-3.449775832043908	AACAGTAGCAGTGAC
chr2	183869037	183869038	chr2:183869038:T:A	rs826173	T	A	T	Sox1_MA0870.1	16	0	-	0	0	.
chr2	183869066	183869067	chr2:183869067:T:C	rs111634644	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	184931617	184931618	chr2:184931618:C:T	rs6722992	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr2	185145993	185145994	chr2:185145994:C:T	rs1483236	C	T	T	Sox1_MA0870.1	10	1	+	5.901758922469922	12.710456006606256	AACAATTGCACTGGT
chr2	186105342	186105343	chr2:186105343:C:T	rs147312753	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	186336584	186336585	chr2:186336585:G:T	rs2044683	G	T	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	186701928	186701929	chr2:186701929:T:A	rs12612335	T	A	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	187250670	187250671	chr2:187250671:A:G	rs1569135	A	G	A	Sox1_MA0870.1	1	1	+	6.147534089074785	2.049243433681643	AACAAATCCATTGGC
chr2	187263549	187263550	chr2:187263550:A:C	rs75489379	A	C	A	Sox1_MA0870.1	30	0	+	0	0	.
chr2	187547301	187547302	chr2:187547302:T:A	rs58835850	T	A	T	Sox1_MA0870.1	18	0	-	0	0	.
chr2	187567399	187567400	chr2:187567400:T:C	rs150004323	T	C	T	Sox1_MA0870.1	11	1	+	7.558271062496683	2.6028760766863495	TACCATTTCATTGTG
chr2	187583028	187583029	chr2:187583029:C:T	rs10187989	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	187986645	187986646	chr2:187986646:C:G	rs77493856	C	G	C	Sox1_MA0870.1	8	1	-	3.824928673898547	7.595431666798884	CCCAATTGGAGTGTC
chr2	188182172	188182173	chr2:188182173:G:A	rs1439905	G	A	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	188415877	188415878	chr2:188415878:C:G	rs4381754	C	G	C	Sox1_MA0870.1	7	1	+	6.134182207027434	6.166964706766969	ATTAATTCCATTGTT
chr2	188415902	188415903	chr2:188415903:A:G	rs4476318	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr2	188524140	188524141	chr2:188524141:A:G	rs558330372	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr2	188609053	188609054	chr2:188609054:C:T	rs6434291	C	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	188965669	188965670	chr2:188965670:T:G	rs35222811	T	G	T	Sox1_MA0870.1	3	1	-	4.932272319154609	-0.1534926058835665	GGCAATATCATTATT
chr2	188980788	188980789	chr2:188980789:A:G	rs1914037	A	G	G	Sox1_MA0870.1	4	1	+	5.126146765980196	-1.6514314881899925	AACAATATCATTTAA
chr2	189013312	189013313	chr2:189013313:G:A	rs1434570164	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	189016178	189016179	chr2:189016179:G:A	rs62181745	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr2	189016221	189016222	chr2:189016222:C:G	rs4667258	C	G	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	189212109	189212110	chr2:189212110:T:C	rs11678388	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr2	189213377	189213378	chr2:189213378:A:C	rs143842855	A	C	A	Sox1_MA0870.1	25	0	-	0	0	.
chr2	189217545	189217546	chr2:189217546:A:G	rs1533618	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr2	189411811	189411812	chr2:189411812:T:C	rs140415580	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr2	189480655	189480656	chr2:189480656:C:A	rs146015099	C	A	C	Sox1_MA0870.1	13	1	+	4.980857175625647	3.8129864464874816	AACAATTTCAGTTCT
chr2	189825044	189825045	chr2:189825045:G:A	rs1233284	G	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr2	190079399	190079400	chr2:190079400:A:G	rs6434378	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr2	190124298	190124299	chr2:190124299:T:G	rs62186791	T	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr2	190197304	190197305	chr2:190197305:C:T	rs11894667	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	190407877	190407878	chr2:190407878:C:G	rs754110681	C	G	C	Sox1_MA0870.1	31	0	+	0	0	.
chr2	190867575	190867576	chr2:190867576:C:T	rs76382580	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr2	190973615	190973616	chr2:190973616:T:C	rs6734110	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	191155891	191155892	chr2:191155892:A:C	rs1031507	A	C	C	Sox1_MA0870.1	4	1	+	6.117915367069195	4.161102432443978	TTCAAATGCATTGTT
chr2	191253320	191253321	chr2:191253321:T:C	rs1823913	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr2	191296112	191296113	chr2:191296113:A:T	rs4853574	A	T	A	Sox1_MA0870.1	15	0	-	0	0	.
chr2	191355309	191355310	chr2:191355310:A:G	rs34303459	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr2	191703185	191703186	chr2:191703186:G:T	rs12464838	G	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr2	191703204	191703205	chr2:191703205:T:A	rs12469001	T	A	A	Sox1_MA0870.1	4	1	-	5.768580751946864	-1.0089975022233264	AACAATTACATAGCA
chr2	191812227	191812228	chr2:191812228:G:A	rs555052459	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	191918676	191918677	chr2:191918677:T:C	rs141075871	T	C	T	Sox1_MA0870.1	3	1	-	6.308047613449084	-0.5925420537481426	TACATTTACATTGTG
chr2	191937229	191937230	chr2:191937230:T:C	rs182826642	T	C	T	Sox1_MA0870.1	9	1	-	4.356876933399898	-2.5518778459153224	CACACTGACATTTTG
chr2	192148801	192148802	chr2:192148802:C:T	rs2356757	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	192886080	192886081	chr2:192886081:C:T	rs1445542	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr2	193101805	193101806	chr2:193101806:A:T	rs958472576	A	T	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	193463362	193463363	chr2:193463363:G:A	rs72923898	G	A	G	Sox1_MA0870.1	10	1	+	5.216236483505736	0.648664327932964	AACAAAAACAGTGAA
chr2	193627626	193627627	chr2:193627627:C:T	rs6723734	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr2	193751522	193751523	chr2:193751523:C:A	rs71418895	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr2	195395565	195395566	chr2:195395566:C:T	rs16840070	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	195522433	195522434	chr2:195522434:A:G	rs77954896	A	G	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	195634160	195634161	chr2:195634161:C:T	rs72929773	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr2	196051845	196051846	chr2:196051846:G:A	rs12620557	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	196161991	196161992	chr2:196161992:T:C	rs1519600	T	C	C	Sox1_MA0870.1	10	1	+	9.056547526759795	2.247850442623462	ATCAATCACATTGTT
chr2	196193261	196193262	chr2:196193262:G:C	rs10171929	G	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr2	196234149	196234150	chr2:196234150:T:C	rs76448188	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr2	196244773	196244774	chr2:196244774:A:G	rs4850686	A	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	196903662	196903663	chr2:196903663:G:A	rs150396935	G	A	G	Sox1_MA0870.1	0	1	+	11.09461137534078	12.436734518147535	GACAATACCATTGAC
chr2	197075889	197075890	chr2:197075890:A:C	rs137930548	A	C	A	Sox1_MA0870.1	26	0	-	0	0	.
chr2	197255695	197255696	chr2:197255696:C:T	rs140720269	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	197310623	197310624	chr2:197310624:C:T	rs192134306	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	197443088	197443089	chr2:197443089:C:T	rs2564372	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr2	197497293	197497294	chr2:197497294:T:C	rs8539	T	C	.	Sox1_MA0870.1	5	1	-	5.221665606318923	3.3376308609816965	TACAAAAACATTGGA
chr2	197674775	197674776	chr2:197674776:C:T	rs187648529	C	T	C	Sox1_MA0870.1	0	1	-	3.9348750793056113	5.276998222112365	GACACTTCCTTTGCT
chr2	197837699	197837700	chr2:197837700:C:A	rs700677	C	A	C	Sox1_MA0870.1	12	1	-	5.895483626540615	-1.0132711527746046	CACACTAACTTTGTG
chr2	197924288	197924289	chr2:197924289:T:C	rs12995110	T	C	-	Sox1_MA0870.1	9	1	-	5.91875471892858	-0.9900000603866412	AACAAAGACATTGAA
chr2	198017544	198017545	chr2:198017545:T:C	rs79909932	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr2	198317664	198317665	chr2:198317665:C:T	rs2529666	C	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr2	198962747	198962748	chr2:198962748:T:C	rs6714524	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr2	199606677	199606678	chr2:199606678:T:C	rs6723090	T	C	T	Sox1_MA0870.1	7	1	-	8.36493417054183	7.967955842745321	TTCAATAACAGTGTA
chr2	199798763	199798764	chr2:199798764:T:C	rs4353632	T	C	C	Sox1_MA0870.1	4	1	-	5.589478611654485	-1.1880996425157027	ATCCATAAGATTGTT
chr2	199798843	199798844	chr2:199798844:A:C	rs189214352	A	C	A	Sox1_MA0870.1	26	0	-	0	0	.
chr2	199799146	199799147	chr2:199799147:A:G	rs77624902	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr2	199967139	199967140	chr2:199967140:C:G	rs10497843	C	G	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	200192720	200192721	chr2:200192721:G:A	rs62181774	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr2	200339970	200339971	chr2:200339971:C:T	rs72918492	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr2	200479710	200479711	chr2:200479711:A:G	rs733054	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	200480071	200480072	chr2:200480072:G:C	rs17447905	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr2	200480082	200480083	chr2:200480083:G:T	rs75620403	G	T	G	Sox1_MA0870.1	4	1	-	5.3801822639705215	7.336995198595739	TACACTGACATTTTT
chr2	200656510	200656511	chr2:200656511:C:A	rs2287013	C	A	A	Sox1_MA0870.1	12	1	-	8.530925045003954	1.6221702656887342	GACACTAAAATTGTT
chr2	200667901	200667902	chr2:200667902:A:T	rs2715905	A	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr2	200731586	200731587	chr2:200731587:G:C	rs114407623	G	C	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	200735718	200735719	chr2:200735719:C:T	rs6738605	C	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr2	200810260	200810261	chr2:200810261:A:G	rs142900857	A	G	A	Sox1_MA0870.1	5	1	-	9.367241042889233	2.4640762842414747	AACACTGTCAGTGCT
chr2	200901843	200901844	chr2:200901844:T:C	chr2:200901844:T:C	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr2	201116119	201116120	chr2:201116120:G:A	rs75208666	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr2	201253541	201253542	chr2:201253542:T:C	rs16836969	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr2	201258411	201258412	chr2:201258412:C:T	rs529403950	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr2	201652531	201652532	chr2:201652532:C:T	rs56225831	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	202052196	202052197	chr2:202052197:G:T	rs75569293	G	T	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	202072560	202072561	chr2:202072561:G:A	rs871949	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	202201324	202201325	chr2:202201325:G:T	rs12693962	G	T	G	Sox1_MA0870.1	14	1	+	4.148431063758403	5.874113151476507	AGCAGTTACATTGTG
chr2	202201326	202201327	chr2:202201327:G:C	rs12693963	G	C	G	Sox1_MA0870.1	16	0	+	0	0	.
chr2	202267064	202267065	chr2:202267065:T:C	rs186552491	T	C	T	Sox1_MA0870.1	1	1	-	6.803847029902693	2.7055563745095514	AACCATTTCAGTGCT
chr2	202329532	202329533	chr2:202329533:A:C	rs6435143	A	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	202908180	202908181	chr2:202908181:G:A	rs17637266	G	A	G	Sox1_MA0870.1	1	1	-	3.873253243102213	4.365109380785571	CCTAATGGCATTGTT
chr2	203450670	203450671	chr2:203450671:G:A	rs11679740	G	A	G	Sox1_MA0870.1	13	1	-	4.444704929257535	6.62236022670853	AACACTAACAGAGCT
chr2	203574974	203574975	chr2:203574975:G:A	rs151087518	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	203574977	203574978	chr2:203574978:C:T	rs7594831	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	203744550	203744551	chr2:203744551:A:G	rs10497872	A	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	203914251	203914252	chr2:203914252:T:C	chr2:203914252:T:C	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr2	204066220	204066221	chr2:204066221:A:G	rs79208898	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr2	204078967	204078968	chr2:204078968:G:A	rs78270258	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	204491599	204491600	chr2:204491600:T:A	rs13005161	T	A	T	Sox1_MA0870.1	16	0	-	0	0	.
chr2	205586197	205586198	chr2:205586198:G:A	rs7605598	G	A	G	Sox1_MA0870.1	5	1	-	4.795548882675012	11.698713641322769	TACAACAGCATTGCC
chr2	205589669	205589670	chr2:205589670:T:C	rs12615013	T	C	T	Sox1_MA0870.1	14	1	+	4.054956565702564	2.543947161221159	CACCCTCACATTGTT
chr2	205834945	205834946	chr2:205834946:A:T	rs146568255	A	T	A	Sox1_MA0870.1	11	1	-	10.121523597207862	3.218790910351029	CACACTATCAGTGTG
chr2	205834971	205834972	chr2:205834972:C:T	rs11681752	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	205964632	205964633	chr2:205964633:G:C	rs6748181	G	C	G	Sox1_MA0870.1	13	1	+	8.387864098998378	9.852756528184456	AACAATAATATTGGC
chr2	206804573	206804574	chr2:206804574:G:A	rs10207817	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr2	206873633	206873634	chr2:206873634:T:C	rs144800529	T	C	T	Sox1_MA0870.1	5	1	+	4.657270409575305	-2.245894349072454	AACCATGCGAGTGTT
chr2	206878992	206878993	chr2:206878993:T:C	rs56409875	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr2	206918602	206918603	chr2:206918603:C:G	rs76954271	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	206936622	206936623	chr2:206936623:C:G	rs78351828	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr2	206936662	206936663	chr2:206936663:T:C	rs35631251	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	206940390	206940391	chr2:206940391:G:T	rs56241887	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	207110093	207110094	chr2:207110094:C:T	rs2244923	C	T	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	207468299	207468300	chr2:207468300:T:A	rs75286181	T	A	T	Sox1_MA0870.1	3	1	-	8.001360224121326	2.4870649180439894	GACACTAATAGTGTT
chr2	207840366	207840367	chr2:207840367:C:A	rs7574706	C	A	.	Sox1_MA0870.1	7	1	+	5.3653851565923425	5.795145984128384	AAAAAAACCATTGTT
chr2	208096699	208096700	chr2:208096700:C:A	rs6713275	C	A	c	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	208353284	208353285	chr2:208353285:A:G	rs34904313	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr2	208432217	208432218	chr2:208432218:G:T	rs10497900	G	T	G	Sox1_MA0870.1	16	0	+	0	0	.
chr2	208957316	208957317	chr2:208957317:G:T	rs12478669	G	T	G	Sox1_MA0870.1	15	0	-	0	0	.
chr2	209611686	209611687	chr2:209611687:T:C	rs16843236	T	C	T	Sox1_MA0870.1	11	1	+	5.77673353318451	0.8213385473741753	GTCCATAACAGTGTT
chr2	209684453	209684454	chr2:209684454:C:A	rs3768816	C	A	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	209757547	209757548	chr2:209757548:C:T	rs2191913	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	210499456	210499457	chr2:210499457:G:A	rs2160851	G	A	A	Sox1_MA0870.1	34	0	+	0	0	.
chr2	210572889	210572890	chr2:210572890:T:C	rs12694203	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr2	210776874	210776875	chr2:210776875:T:G	rs2058925	T	G	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	210901225	210901226	chr2:210901226:C:T	rs77523546	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	211437423	211437424	chr2:211437424:G:A	rs17803242	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr2	211509999	211510000	chr2:211510000:T:C	rs1851189	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	211720339	211720340	chr2:211720340:G:C	rs6435664	G	C	C	Sox1_MA0870.1	2	1	-	4.675482962880833	-2.2332718164343874	CACAAAGGCATTGAC
chr2	211905087	211905088	chr2:211905088:C:T	rs13389940	C	T	t	Sox1_MA0870.1	4	1	+	4.407487182532293	-0.41327813701267957	CACACATTCATTGCC
chr2	212229117	212229118	chr2:212229118:A:G	rs9288450	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	212392288	212392289	chr2:212392289:C:T	rs114415760	C	T	T	Sox1_MA0870.1	28	0	+	0	0	.
chr2	212726157	212726158	chr2:212726158:A:G	rs548808035	A	G	A	Sox1_MA0870.1	3	1	+	3.826675218074549	-3.073914449122677	GACACTAACATTTCC
chr2	212901711	212901712	chr2:212901712:T:A	rs7584738	T	A	t	Sox1_MA0870.1	3	1	-	6.740824739757478	1.2265294336801418	AACACTAGCATGGTG
chr2	212930574	212930575	chr2:212930575:T:G	rs74652229	T	G	T	Sox1_MA0870.1	5	1	+	5.388675673436526	-1.5144890852112336	AACATTTTCAGTGTA
chr2	212960056	212960057	chr2:212960057:T:C	rs1871944	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr2	213175322	213175323	chr2:213175323:T:A	rs4673732	T	A	T	Sox1_MA0870.1	17	0	-	0	0	.
chr2	213886522	213886523	chr2:213886523:A:T	rs10932508	A	T	A	Sox1_MA0870.1	33	0	+	0	0	.
chr2	214215677	214215678	chr2:214215678:C:T	rs13028775	C	T	T	Sox1_MA0870.1	28	0	-	0	0	.
chr2	214587768	214587769	chr2:214587769:G:T	rs9967682	G	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr2	215439311	215439312	chr2:215439312:G:A	rs1250228	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr2	215487531	215487532	chr2:215487532:A:T	rs11902239	A	T	t	Sox1_MA0870.1	27	0	+	0	0	.
chr2	215501243	215501244	chr2:215501244:T:C	rs80293382	T	C	t	Sox1_MA0870.1	11	1	+	7.494186289445186	2.5387913036348526	TACAAATGCATTGTA
chr2	215665513	215665514	chr2:215665514:G:A	rs1250078	G	A	A	Sox1_MA0870.1	20	0	-	0	0	.
chr2	215920242	215920243	chr2:215920243:C:T	rs13407338	C	T	C	Sox1_MA0870.1	12	1	-	7.107652621007606	0.198897841692386	AACAAATTTATTGTT
chr2	215922054	215922055	chr2:215922055:A:G	rs55917242	A	G	G	Sox1_MA0870.1	15	0	+	0	0	.
chr2	215940849	215940850	chr2:215940850:T:C	rs12472599	T	C	t	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	216032415	216032416	chr2:216032416:T:C	rs7600247	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	216171717	216171718	chr2:216171718:A:G	rs207928	A	G	N	Sox1_MA0870.1	29	0	+	0	0	.
chr2	216429270	216429271	chr2:216429271:A:G	rs2738282	A	G	a	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	216440756	216440757	chr2:216440757:T:A	rs2627046	T	A	T	Sox1_MA0870.1	1	1	-	3.6129590081910754	0.3356747610299361	AACAGTACCATGGTT
chr2	216546522	216546523	chr2:216546523:T:C	rs922987	T	C	C	Sox1_MA0870.1	23	0	+	0	0	.
chr2	216563843	216563844	chr2:216563844:C:A	rs55949753	C	A	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	216563858	216563859	chr2:216563859:T:C	rs9917209	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	216622898	216622899	chr2:216622899:G:A	rs4674101	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr2	216717205	216717206	chr2:216717206:G:T	rs34825902	G	T	G	Sox1_MA0870.1	18	0	-	0	0	.
chr2	216781969	216781970	chr2:216781970:G:A	rs2541397	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	217010207	217010208	chr2:217010208:T:C	rs13389571	T	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr2	217072329	217072330	chr2:217072330:C:T	rs16856893	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	217358299	217358300	chr2:217358300:T:C	rs4674159	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	217551689	217551690	chr2:217551690:T:C	rs1388265351	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr2	217555875	217555876	chr2:217555876:C:G	rs35579843	C	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr2	217770714	217770715	chr2:217770715:C:T	rs11682125	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr2	217793527	217793528	chr2:217793528:C:T	rs551725718	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	217918246	217918247	chr2:217918247:C:T	rs16858457	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr2	217933153	217933154	chr2:217933154:G:A	rs115963217	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr2	218080321	218080322	chr2:218080322:G:A	rs12694427	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	218298585	218298586	chr2:218298586:T:C	rs78757285	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	218322643	218322644	chr2:218322644:T:C	rs10203039	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr2	218994351	218994352	chr2:218994352:T:C	rs78050513	T	C	T	Sox1_MA0870.1	12	1	-	5.7200185215872	12.62877330090242	GACAATAACAGTATC
chr2	219033003	219033004	chr2:219033004:C:G	rs7572866	C	G	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr2	219277240	219277241	chr2:219277241:A:T	rs4674372	A	T	A	Sox1_MA0870.1	18	0	-	0	0	.
chr2	219295330	219295331	chr2:219295331:G:T	rs767844864	G	T	G	Sox1_MA0870.1	27	0	-	0	0	.
chr2	219295354	219295355	chr2:219295355:T:C	rs11887718	T	C	T	Sox1_MA0870.1	3	1	-	5.428865988042464	-1.4717236791547617	CACAATAGCTGTGTC
chr2	219624887	219624888	chr2:219624888:A:G	rs137943912	A	G	A	Sox1_MA0870.1	9	1	+	6.234195574317301	-0.6745592049979197	CACCATTTCAGTGTC
chr2	219648100	219648101	chr2:219648101:C:T	rs659266	C	T	C	Sox1_MA0870.1	10	1	-	4.47903404791875	-0.08853810765402248	TAAAATACCAGTGTG
chr2	219737368	219737369	chr2:219737369:C:A	rs143840607	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr2	219967021	219967022	chr2:219967022:A:G	rs34011564	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	219973240	219973241	chr2:219973241:A:C	rs115891716	A	C	A	Sox1_MA0870.1	1	1	+	3.3998442124700268	-0.3692961723744702	CATACTGTCAGTGTT
chr2	220062422	220062423	chr2:220062423:G:A	rs730833	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	220064276	220064277	chr2:220064277:G:A	rs143391550	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr2	220101753	220101754	chr2:220101754:T:C	rs4618039	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr2	220179349	220179350	chr2:220179350:C:T	rs10932836	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr2	220179376	220179377	chr2:220179377:T:C	rs77568105	T	C	T	Sox1_MA0870.1	4	1	-	5.610477698151451	-1.1671005560187373	GCCAATTTCAGTGAT
chr2	220312203	220312204	chr2:220312204:T:C	rs7558175	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	220314869	220314870	chr2:220314870:G:A	rs6757742	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr2	220319755	220319756	chr2:220319756:G:T	rs716029	G	T	T	Sox1_MA0870.1	24	0	+	0	0	.
chr2	220373980	220373981	chr2:220373981:T:C	rs79630665	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr2	220396685	220396686	chr2:220396686:T:A	rs13389098	T	A	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	220466607	220466608	chr2:220466608:T:C	rs62187871	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	220556498	220556499	chr2:220556499:T:A	rs77196966	T	A	T	Sox1_MA0870.1	13	1	+	6.606515846395382	3.260989819806223	AACACTCAGATTGTT
chr2	220703197	220703198	chr2:220703198:C:T	rs16861659	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	220733415	220733416	chr2:220733416:T:C	rs17675314	T	C	T	Sox1_MA0870.1	4	1	-	8.00032008905513	1.2227418348849426	GTCAATTTCATTGCC
chr2	220779815	220779816	chr2:220779816:G:A	rs7580960	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr2	220963100	220963101	chr2:220963101:G:A	rs1435178	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	221256127	221256128	chr2:221256128:C:A	rs13423224	C	A	C	Sox1_MA0870.1	21	0	-	0	0	.
chr2	221310958	221310959	chr2:221310959:C:T	rs10203169	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	222142276	222142277	chr2:222142277:A:G	rs6751789	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	222286741	222286742	chr2:222286742:A:G	rs4673015	A	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr2	222652985	222652986	chr2:222652986:C:G	rs10170846	C	G	g	Sox1_MA0870.1	19	0	+	0	0	.
chr2	222709988	222709989	chr2:222709989:T:C	rs10173147	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	222861072	222861073	chr2:222861073:G:C	rs561322556	G	C	-	Sox1_MA0870.1	5	1	-	4.355581498743852	4.355581498743852	GACAACTGCAGTGTC
chr2	222861097	222861098	chr2:222861098:C:G	rs530247752	C	G	-	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	222879412	222879413	chr2:222879413:A:G	rs34640732	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr2	223123038	223123039	chr2:223123039:G:A	rs6761103	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	223518972	223518973	chr2:223518973:A:C	rs1921631	A	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	223688800	223688801	chr2:223688801:A:C	rs113884461	A	C	A	Sox1_MA0870.1	11	1	-	3.812625749332421	-3.0901069375244097	CTCATTATCATTGCT
chr2	223722805	223722806	chr2:223722806:G:T	rs73075312	G	T	G	Sox1_MA0870.1	20	0	-	0	0	.
chr2	223818523	223818524	chr2:223818524:T:C	rs62185133	T	C	C	Sox1_MA0870.1	7	1	-	3.6367729872559056	3.2397946594593976	CCCAAGAACATTGCT
chr2	223837587	223837588	chr2:223837588:G:C	rs3738961	G	C	c	Sox1_MA0870.1	14	1	-	7.185492267279265	6.970819584042567	CACACTTTCAGTGCC
chr2	223861474	223861475	chr2:223861475:C:T	rs10432546	C	T	C	Sox1_MA0870.1	10	1	-	5.030048672464758	0.4624765168919852	ATCAAAACCAGTGTG
chr2	223942015	223942016	chr2:223942016:C:G	rs73089301	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	224223111	224223112	chr2:224223112:G:A	rs6717510	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr2	224347792	224347793	chr2:224347793:T:G	rs12105326	T	G	G	Sox1_MA0870.1	9	1	-	4.8781463310179305	-2.030608448297291	GACATTTACAGTGTC
chr2	224758134	224758135	chr2:224758135:T:C	rs116393193	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	224904541	224904542	chr2:224904542:A:G	rs11901561	A	G	-	Sox1_MA0870.1	3	1	+	3.2023854882441647	-3.698204178953059	CACACTAACTGTGCT
chr2	224910155	224910156	chr2:224910156:G:A	rs538964599	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	224910169	224910170	chr2:224910170:C:T	rs17199389	C	T	C	Sox1_MA0870.1	13	1	+	4.867480315143424	7.045135612594418	ACCAATAACGTTGCT
chr2	224915478	224915479	chr2:224915479:A:G	rs34256085	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	224932104	224932105	chr2:224932105:T:C	rs10192580	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr2	225289414	225289415	chr2:225289415:A:C	rs6743368	A	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	225289432	225289433	chr2:225289433:G:A	rs76545144	G	A	G	Sox1_MA0870.1	12	1	+	6.410181459226789	-0.49857332008843225	TACAATAACAGCGCT
chr2	225289447	225289448	chr2:225289448:G:A	rs6715186	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr2	225616428	225616429	chr2:225616429:C:T	rs13421400	C	T	c	Sox1_MA0870.1	23	0	+	0	0	.
chr2	225949185	225949186	chr2:225949186:T:C	rs1589153	T	C	C	Sox1_MA0870.1	17	0	-	0	0	.
chr2	226001244	226001245	chr2:226001245:A:G	rs908719	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	226277321	226277322	chr2:226277322:C:T	rs2713542	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	226756579	226756580	chr2:226756580:G:A	rs73992203	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	226992780	226992781	chr2:226992781:G:T	rs4234064	G	T	T	Sox1_MA0870.1	7	1	+	3.5206290030212273	3.4760174507333206	AACACTTGCGGTGTG
chr2	227034245	227034246	chr2:227034246:T:A	rs1997484	T	A	T	Sox1_MA0870.1	18	0	+	0	0	.
chr2	227130207	227130208	chr2:227130208:G:A	rs62277808	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	227227742	227227743	chr2:227227743:C:A	rs12617010	C	A	C	Sox1_MA0870.1	16	0	-	0	0	.
chr2	227308919	227308920	chr2:227308920:A:G	rs77964815	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr2	227366010	227366011	chr2:227366011:G:A	rs75274263	G	A	G	Sox1_MA0870.1	7	1	+	3.7929260514635166	4.189904379260025	AAACATGGCATTGTT
chr2	227369400	227369401	chr2:227369401:T:C	rs78978321	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	227370962	227370963	chr2:227370963:T:C	rs201095743	T	C	T	Sox1_MA0870.1	11	1	+	4.661851934997767	-0.2935430508125668	GTCAAGGACATTGTT
chr2	227388836	227388837	chr2:227388837:G:A	rs35438597	G	A	g	Sox1_MA0870.1	2	1	-	5.401959122914116	-1.506795656401105	CACAAGAATATTGTT
chr2	227388854	227388855	chr2:227388855:A:C	rs145814862	A	C	a	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	227463201	227463202	chr2:227463202:C:T	rs4673199	C	T	T	Sox1_MA0870.1	10	1	-	5.190171856184493	0.6225997006117203	CCCAATACCAGTGAC
chr2	227607500	227607501	chr2:227607501:A:G	rs7590997	A	G	G	Sox1_MA0870.1	14	1	+	4.058850027188792	4.234181264255836	CACTATTGCATTGGA
chr2	227671459	227671460	chr2:227671460:C:T	rs62191368	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	227743324	227743325	chr2:227743325:C:T	rs12694746	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr2	227748272	227748273	chr2:227748273:G:A	rs78800914	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr2	227864655	227864656	chr2:227864656:C:G	rs879611780	C	G	C	Sox1_MA0870.1	7	1	+	5.123862753319053	5.156645253058587	AACATTTCCAGTGCT
chr2	227864674	227864675	chr2:227864675:A:G	rs186095201	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr2	227884535	227884536	chr2:227884536:C:A	rs149167576	C	A	C	Sox1_MA0870.1	12	1	-	5.524660757541055	-1.3840940217741662	GACAGTAACATTGCA
chr2	227884561	227884562	chr2:227884562:G:T	rs13405511	G	T	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr2	228039913	228039914	chr2:228039914:C:T	rs7593227	C	T	T	Sox1_MA0870.1	20	0	-	0	0	.
chr2	228039939	228039940	chr2:228039940:C:T	rs7593234	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr2	228426826	228426827	chr2:228426827:G:A	rs6436789	G	A	A	Sox1_MA0870.1	0	1	-	5.321575579101742	4.619198821954262	CACTCTGCCATTGTG
chr2	228443929	228443930	chr2:228443930:G:A	rs2194551	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr2	228443937	228443938	chr2:228443938:G:C	rs58276054	G	C	G	Sox1_MA0870.1	14	1	-	4.587713522857545	4.373040839620845	AACAATTGCTTTGAC
chr2	228445370	228445371	chr2:228445371:C:G	rs60799555	C	G	C	Sox1_MA0870.1	30	0	-	0	0	.
chr2	228798712	228798713	chr2:228798713:T:C	rs57689303	T	C	T	Sox1_MA0870.1	9	1	-	4.885058776581888	-2.0236960027333333	AGCACTTTCATTGGG
chr2	228848046	228848047	chr2:228848047:G:A	rs72983359	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr2	228884514	228884515	chr2:228884515:A:G	rs800746	A	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr2	229161033	229161034	chr2:229161034:A:G	rs4973167	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr2	229272607	229272608	chr2:229272608:A:C	rs1239009	A	C	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	229419399	229419400	chr2:229419400:G:A	rs6710468	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	229462312	229462313	chr2:229462313:C:A	rs2112104	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr2	229464278	229464279	chr2:229464279:G:A	rs150198484	G	A	g	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	229612514	229612515	chr2:229612515:C:T	rs149566991	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr2	229688011	229688012	chr2:229688012:T:G	rs208788	T	G	G	Sox1_MA0870.1	11	1	+	4.011367208669061	-2.8913654781877716	TCCACTGCCATTGCA
chr2	229781049	229781050	chr2:229781050:T:C	rs114628133	T	C	T	Sox1_MA0870.1	4	1	-	4.87932663888765	-1.8982516152825386	AACAACAGCATTGGA
chr2	229832581	229832582	chr2:229832582:A:G	rs186478256	A	G	A	Sox1_MA0870.1	1	1	+	7.3004934033997575	3.2022027480066155	AACACAGGCATTGTC
chr2	230179147	230179148	chr2:230179148:T:G	rs967007	T	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr2	230377483	230377484	chr2:230377484:G:A	rs13012615	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	230431981	230431982	chr2:230431982:T:G	rs11898168	T	G	T	Sox1_MA0870.1	9	1	-	6.9613316122972115	0.05257683298199012	TACACTTGGATTGTG
chr2	230575381	230575382	chr2:230575382:G:A	rs73992347	G	A	.	Sox1_MA0870.1	30	0	+	0	0	.
chr2	230601095	230601096	chr2:230601096:T:C	rs1173175	T	C	C	Sox1_MA0870.1	9	1	-	7.004542137618639	0.09578735830341845	TACCATGCCATTGTG
chr2	230943517	230943518	chr2:230943518:C:T	rs4973352	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr2	230964792	230964793	chr2:230964793:C:T	rs2089662	C	T	-	Sox1_MA0870.1	-11	0	+	0	0	.
chr2	230973418	230973419	chr2:230973419:A:G	rs3106301	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr2	231242041	231242042	chr2:231242042:G:A	rs1395369585	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr2	231330574	231330575	chr2:231330575:A:G	rs1669078	A	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr2	231523323	231523324	chr2:231523324:T:C	rs11673905	T	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr2	231546564	231546565	chr2:231546565:A:G	rs988609665	A	G	A	Sox1_MA0870.1	5	1	-	6.088917091513386	-0.8142476671343737	AACATTAACATTGAC
chr2	231661389	231661390	chr2:231661390:A:G	rs55846746	A	G	A	Sox1_MA0870.1	3	1	+	8.42770223527766	1.5271125680804336	AACACTACCATTCTT
chr2	231661416	231661417	chr2:231661417:T:C	rs553259757	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr2	231681774	231681775	chr2:231681775:T:C	rs11894219	T	C	T	Sox1_MA0870.1	14	1	+	5.860807304683945	4.349797900202541	CTCACTTACAGTGCT
chr2	231709596	231709597	chr2:231709597:C:T	rs62197231	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr2	231714307	231714308	chr2:231714308:C:T	rs141242229	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr2	231932439	231932440	chr2:231932440:C:T	rs12464230	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr2	231935873	231935874	chr2:231935874:T:A	rs6735160	T	A	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	232383487	232383488	chr2:232383488:C:A	rs7600132	C	A	C	Sox1_MA0870.1	6	1	-	3.418877679838351	3.9844356572647683	GACAAGGTCATTGCA
chr2	232383495	232383496	chr2:232383496:C:T	rs2741313	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr2	232473787	232473788	chr2:232473788:C:T	rs73995650	C	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr2	232474062	232474063	chr2:232474063:T:G	rs73995652	T	G	T	Sox1_MA0870.1	34	0	-	0	0	.
chr2	232593077	232593078	chr2:232593078:G:A	rs534909998	G	A	G	Sox1_MA0870.1	13	1	-	9.977410572603556	12.155065870054552	AACACTTGCAGTGCT
chr2	232718051	232718052	chr2:232718052:C:T	rs35212961	C	T	C	Sox1_MA0870.1	0	1	+	3.4435925508333103	2.74121579368583	CGCAGTATCATTGTG
chr2	232718082	232718083	chr2:232718083:T:G	rs6761324	T	G	t	Sox1_MA0870.1	31	0	+	0	0	.
chr2	232795993	232795994	chr2:232795994:T:G	rs2305139	T	G	T	Sox1_MA0870.1	9	1	-	3.6481890183879773	-3.2605657609272436	CATAATAACAGTGCC
chr2	232913148	232913149	chr2:232913149:C:T	rs778364	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr2	232972540	232972541	chr2:232972541:T:C	rs62191859	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	233011827	233011828	chr2:233011828:T:C	rs77562385	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	233324844	233324845	chr2:233324845:G:A	rs10168355	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr2	233399965	233399966	chr2:233399966:G:A	rs10184166	G	A	A	Sox1_MA0870.1	12	1	+	5.295866821714216	-1.612887957601004	ATTAATAACAGTGTT
chr2	233640167	233640168	chr2:233640168:A:G	rs2741034	A	G	A	Sox1_MA0870.1	7	1	+	4.867610454411228	4.470632126614721	CCCACTAAAATTGTT
chr2	233655351	233655352	chr2:233655352:G:A	rs2741038	G	A	G	Sox1_MA0870.1	4	1	-	3.8714054481930438	-0.9493598713519266	GAGACTTCCAGTGTT
chr2	233775650	233775651	chr2:233775651:G:A	rs75026708	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	234027784	234027785	chr2:234027785:A:G	rs11682121	A	G	a	Sox1_MA0870.1	25	0	+	0	0	.
chr2	234035383	234035384	chr2:234035384:A:G	rs624460	A	G	A	Sox1_MA0870.1	3	1	+	3.93250101232632	-2.968088654870904	CACACTAACATTCCC
chr2	234303116	234303117	chr2:234303117:C:T	rs13031639	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr2	234346396	234346397	chr2:234346397:C:T	rs77402631	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr2	234608434	234608435	chr2:234608435:A:C	rs1917946	A	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr2	234609895	234609896	chr2:234609896:C:A	rs2386505	C	A	-	Sox1_MA0870.1	15	0	-	0	0	.
chr2	234630257	234630258	chr2:234630258:A:C	rs4663449	A	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr2	234661246	234661247	chr2:234661247:C:T	rs11693749	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr2	234661247	234661248	chr2:234661248:A:G	rs11677087	A	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr2	235032016	235032017	chr2:235032017:A:G	rs73126125	A	G	A	Sox1_MA0870.1	5	1	-	6.780969298141143	-0.12219546050661745	GACTATAGCATTGCC
chr2	235032033	235032034	chr2:235032034:C:G	rs11888319	C	G	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr2	235144713	235144714	chr2:235144714:A:G	rs6742844	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr2	235194479	235194480	chr2:235194480:A:G	rs1864716	A	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr2	235235962	235235963	chr2:235235963:T:C	rs6431352	T	C	T	Sox1_MA0870.1	11	1	+	4.255807721800974	-0.69958726400936	TACTATGGCATTGCA
chr2	235235963	235235964	chr2:235235964:G:C	rs6431353	G	C	G	Sox1_MA0870.1	12	1	+	4.255807721800974	-2.6529470575142464	TACTATGGCATTGCA
chr2	235263646	235263647	chr2:235263647:C:T	rs10929113	C	T	C	Sox1_MA0870.1	8	1	+	7.2398332491959705	3.058223702558687	AACAATTCCATGGCT
chr2	235353808	235353809	chr2:235353809:T:C	rs57570634	T	C	T	Sox1_MA0870.1	10	1	+	5.440704065614582	-1.367993018521751	AACAAATGAATTGTT
chr2	235448787	235448788	chr2:235448788:T:A	rs10929132	T	A	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	235512259	235512260	chr2:235512260:G:A	rs10803646	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr2	235676295	235676296	chr2:235676296:C:A	rs780220952	C	A	C	Sox1_MA0870.1	31	0	+	0	0	.
chr2	235817416	235817417	chr2:235817417:T:C	rs72983080	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr2	235901114	235901115	chr2:235901115:A:G	rs12328959	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr2	235937883	235937884	chr2:235937884:G:C	rs73128470	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr2	236139534	236139535	chr2:236139535:C:T	rs6431431	C	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	236359973	236359974	chr2:236359974:G:A	rs72982610	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr2	236398405	236398406	chr2:236398406:A:G	rs72984723	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	236551721	236551722	chr2:236551722:T:C	rs7582574	T	C	C	Sox1_MA0870.1	6	1	-	5.299980691361581	3.761373998220863	AAGTATAACATTGTT
chr2	236553038	236553039	chr2:236553039:G:C	rs76752414	G	C	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr2	236706275	236706276	chr2:236706276:C:T	rs7599728	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr2	236714486	236714487	chr2:236714487:A:G	rs79161818	A	G	A	Sox1_MA0870.1	4	1	+	7.4003233514329425	0.6227450972627535	CACAATAACTTTGCT
chr2	236714488	236714489	chr2:236714489:A:G	rs13410189	A	G	G	Sox1_MA0870.1	6	1	+	7.4003233514329425	5.861716658292225	CACAATAACTTTGCT
chr2	236715727	236715728	chr2:236715728:G:A	chr2:236715728:G:A	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr2	236893346	236893347	chr2:236893347:A:G	rs6732578	A	G	N	Sox1_MA0870.1	6	1	-	5.283020314570753	0.8668700274518513	AACACTTCCATGGCT
chr2	236981614	236981615	chr2:236981615:C:G	rs1814419	C	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr2	237015860	237015861	chr2:237015861:T:C	rs2701326	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr2	237144267	237144268	chr2:237144268:A:G	rs4549025	A	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr2	237144686	237144687	chr2:237144687:G:A	rs72975882	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr2	237255274	237255275	chr2:237255275:C:T	rs79616598	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr2	237428983	237428984	chr2:237428984:T:G	rs72988121	T	G	T	Sox1_MA0870.1	25	0	+	0	0	.
chr2	237545510	237545511	chr2:237545511:C:A	rs867306	C	A	a	Sox1_MA0870.1	3	1	+	3.7634106220463392	8.849175547084513	CACCCTGACAGTGTA
chr2	237638748	237638749	chr2:237638749:C:T	rs1038990	C	T	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	237734067	237734068	chr2:237734068:G:A	rs77283439	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr2	237737220	237737221	chr2:237737221:C:T	rs141074040	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	237775324	237775325	chr2:237775325:C:G	rs10176913	C	G	G	Sox1_MA0870.1	22	0	-	0	0	.
chr2	237924266	237924267	chr2:237924267:T:A	rs7602153	T	A	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	237936078	237936079	chr2:237936079:C:T	rs368157873	C	T	C	Sox1_MA0870.1	13	1	-	6.786836055699375	7.083857755747289	AACACTTGCAGTGGG
chr2	238029697	238029698	chr2:238029698:C:G	rs11887191	C	G	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	238340290	238340291	chr2:238340291:A:G	rs7607405	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr2	238440245	238440246	chr2:238440246:A:G	rs56198112	A	G	A	Sox1_MA0870.1	6	1	+	4.326823748129364	2.788217054988645	GACACTAGGAGTGCC
chr2	238598314	238598315	chr2:238598315:A:G	rs143887241	A	G	A	Sox1_MA0870.1	11	1	-	5.09853264885591	0.14313766304557507	GGCACTGACATTGCC
chr2	238644847	238644848	chr2:238644848:A:G	rs73106894	A	G	A	Sox1_MA0870.1	9	1	+	6.921878041876475	0.013123262561254179	AAAACTGGCATTGTT
chr2	238857977	238857978	chr2:238857978:T:C	rs149346792	T	C	t	Sox1_MA0870.1	10	1	+	5.059689973091505	-1.749007111044829	CACCATTACATTGGG
chr2	238889024	238889025	chr2:238889025:G:C	rs540785959	G	C	G	Sox1_MA0870.1	21	0	+	0	0	.
chr2	238956863	238956864	chr2:238956864:A:T	rs7568239	A	T	A	Sox1_MA0870.1	29	0	+	0	0	.
chr2	238979691	238979692	chr2:238979692:T:G	rs4131058	T	G	T	Sox1_MA0870.1	4	1	-	6.458035904551332	4.501222969926116	AACTATGTGATTGTT
chr2	238995895	238995896	chr2:238995896:C:T	rs79329139	C	T	c	Sox1_MA0870.1	-5	0	+	0	0	.
chr2	239191505	239191506	chr2:239191506:C:T	rs895804	C	T	C	Sox1_MA0870.1	6	1	-	5.426603083678428	6.965209776819146	GACAAAGCCAGTGTG
chr2	239324391	239324392	chr2:239324392:C:T	rs114969440	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr2	239326225	239326226	chr2:239326226:G:A	rs4852047	G	A	G	Sox1_MA0870.1	10	1	+	4.798805327824911	0.23123317225213835	CACAATACGAGTGAA
chr2	239353874	239353875	chr2:239353875:T:C	rs12988669	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr2	239353901	239353902	chr2:239353902:C:T	rs55932933	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr2	239427954	239427955	chr2:239427955:G:T	rs10184738	G	T	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr2	239443319	239443320	chr2:239443320:C:T	rs75704329	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr2	239543000	239543001	chr2:239543001:T:C	rs2068084	T	C	T	Sox1_MA0870.1	14	1	-	4.420435516681723	4.595766753748767	GACAATTACATTACA
chr2	239656267	239656268	chr2:239656268:T:C	rs2083113	T	C	T	Sox1_MA0870.1	9	1	-	5.893735184633506	-1.0150195946817147	AACAGTTACATTGCA
chr2	239748350	239748351	chr2:239748351:G:A	rs1530009	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr2	239757864	239757865	chr2:239757865:C:T	rs74218169	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr2	239775914	239775915	chr2:239775915:G:T	rs74654345	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr2	239783406	239783407	chr2:239783407:G:A	rs35278584	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr2	239888258	239888259	chr2:239888259:C:A	rs9711075	C	A	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	239895777	239895778	chr2:239895778:G:A	rs11695916	G	A	G	Sox1_MA0870.1	10	1	-	3.4564205593491035	10.265117643485437	AGCACTTCCACTGTT
chr2	239938249	239938250	chr2:239938250:T:C	rs10172732	T	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr2	239938252	239938253	chr2:239938253:A:C	rs10178362	A	C	A	Sox1_MA0870.1	19	0	-	0	0	.
chr2	239938290	239938291	chr2:239938291:T:G	rs6752251	T	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr2	239999231	239999232	chr2:239999232:T:C	rs13409579	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr2	240113549	240113550	chr2:240113550:G:A	rs77982803	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr2	240147443	240147444	chr2:240147444:T:G	rs62648946	T	G	-	Sox1_MA0870.1	22	0	-	0	0	.
chr2	240260007	240260008	chr2:240260008:C:T	rs10183031	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr2	240320592	240320593	chr2:240320593:G:A	rs55782345	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr2	240340779	240340780	chr2:240340780:C:T	rs140334923	C	T	C	Sox1_MA0870.1	11	1	-	3.0910272003992394	3.0910272003992394	GACAATGCCAGGGCT
chr2	240340806	240340807	chr2:240340807:G:T	rs114622131	G	T	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr2	240392789	240392790	chr2:240392790:A:C	rs1318523	A	C	A	Sox1_MA0870.1	3	1	+	7.454653519563358	2.368888594525183	AACACTTCCTTTGTT
chr2	240525843	240525844	chr2:240525844:G:A	rs35186665	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr2	240528936	240528937	chr2:240528937:G:A	rs77118343	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr2	240813494	240813495	chr2:240813495:G:A	rs77835327	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	240882063	240882064	chr2:240882064:T:C	rs4312490	T	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr2	240889017	240889018	chr2:240889018:C:T	rs6759908	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr2	240952584	240952585	chr2:240952585:A:C	rs4610049	A	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr2	240952591	240952592	chr2:240952592:G:A	rs4605365	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr2	240962520	240962521	chr2:240962521:C:T	rs536290211	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr2	240962567	240962568	chr2:240962568:G:A	rs183814426	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr2	241006950	241006951	chr2:241006951:G:T	rs11892860	G	T	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr2	241225146	241225147	chr2:241225147:C:T	rs7568928	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr2	241279592	241279593	chr2:241279593:C:T	rs116418494	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr2	241314901	241314902	chr2:241314902:A:G	rs55659209	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr2	241505756	241505757	chr2:241505757:C:T	rs138154504	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr2	241538985	241538986	chr2:241538986:T:C	rs79995252	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr2	241934700	241934701	chr2:241934701:C:T	rs116539363	C	T	.	Sox1_MA0870.1	28	0	+	0	0	.
chr2	241934703	241934704	chr2:241934704:C:A	rs75208989	C	A	.	Sox1_MA0870.1	31	0	+	0	0	.
chr2	241976519	241976520	chr2:241976520:T:C	rs11691410	T	C	.	Sox1_MA0870.1	-1	0	+	0	0	.
chr2	242037348	242037349	chr2:242037349:C:T	rs111884257	C	T	.	Sox1_MA0870.1	28	0	-	0	0	.
chr2	242037376	242037377	chr2:242037377:T:C	rs12477174	T	C	.	Sox1_MA0870.1	0	1	-	9.980936906347274	8.638813763540519	AACAATACCAGTGAG
chr20	278560	278561	chr20:278561:G:A	rs73895210	G	A	A	Sox1_MA0870.1	4	1	+	5.851195046732231	12.62877330090242	GACAGTAACAGTGTC
chr20	463153	463154	chr20:463154:A:G	rs205898	A	G	G	Sox1_MA0870.1	7	1	-	3.5557599061051905	3.567588958653564	CACAATATCAGGGAT
chr20	685319	685320	chr20:685320:C:T	rs760097121	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr20	783194	783195	chr20:783195:A:G	rs6085880	A	G	a	Sox1_MA0870.1	28	0	+	0	0	.
chr20	917574	917575	chr20:917575:T:C	rs540995	T	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr20	1021161	1021162	chr20:1021162:C:T	rs4816143	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr20	1167130	1167131	chr20:1167131:G:A	rs1049901	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr20	1284017	1284018	chr20:1284018:G:A	rs6033309	G	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr20	1335347	1335348	chr20:1335348:A:G	rs6041502	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr20	1427859	1427860	chr20:1427860:G:A	rs73584253	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr20	1430580	1430581	chr20:1430581:A:G	rs115444123	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr20	1470982	1470983	chr20:1470983:T:C	rs1543423	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr20	1706421	1706422	chr20:1706422:T:C	rs6135734	T	C	t	Sox1_MA0870.1	4	1	-	7.510764376260305	0.7331861220901174	CACAATATCACTGTG
chr20	1712968	1712969	chr20:1712969:A:T	rs75794831	A	T	A	Sox1_MA0870.1	29	0	+	0	0	.
chr20	1890135	1890136	chr20:1890136:A:G	rs12625334	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr20	1973692	1973693	chr20:1973693:C:T	rs1022563	C	T	C	Sox1_MA0870.1	0	1	-	6.572054523444775	7.914177666251529	GACACTGCCAGTGGT
chr20	2009335	2009336	chr20:2009336:C:T	rs1418044	C	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr20	2181024	2181025	chr20:2181025:T:A	rs4813409	T	A	T	Sox1_MA0870.1	9	1	-	5.771158080926317	-1.1375966983889039	CTCACTTCCATTGCA
chr20	2181031	2181032	chr20:2181032:G:A	rs4813410	G	A	G	Sox1_MA0870.1	2	1	-	5.771158080926317	-1.137596698388903	CTCACTTCCATTGCA
chr20	2203922	2203923	chr20:2203923:T:C	rs4296494	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr20	2229883	2229884	chr20:2229884:A:C	rs6082461	A	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr20	2304259	2304260	chr20:2304260:G:A	rs214790	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr20	2452342	2452343	chr20:2452343:T:C	chr20:2452343:T:C	T	C	T	Sox1_MA0870.1	10	1	+	4.134005509827672	-2.6746915743086617	AACCTTAACATTGTG
chr20	2473507	2473508	chr20:2473508:A:G	rs118139352	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr20	2533483	2533484	chr20:2533484:G:A	rs6036852	G	A	A	Sox1_MA0870.1	2	1	-	6.869076223492689	-0.03967855582253199	GACACTGCCAGTGAT
chr20	2533911	2533912	chr20:2533912:G:A	rs6076243	G	A	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr20	2658905	2658906	chr20:2658906:G:A	rs367817356	G	A	G	Sox1_MA0870.1	8	1	-	4.1315854762724165	-0.05002407036486567	CTCAATCACATTGCC
chr20	2658923	2658924	chr20:2658924:G:T	rs6037255	G	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr20	2688310	2688311	chr20:2688311:A:T	rs6115555	A	T	A	Sox1_MA0870.1	17	0	+	0	0	.
chr20	2745031	2745032	chr20:2745032:T:C	rs4815541	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr20	2885129	2885130	chr20:2885130:G:A	rs1748066	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr20	3015850	3015851	chr20:3015851:C:T	rs1178016	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr20	3313656	3313657	chr20:3313657:C:T	rs2207994	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr20	3344772	3344773	chr20:3344773:T:C	rs976041	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	3393647	3393648	chr20:3393648:C:T	rs239487	C	T	T	Sox1_MA0870.1	4	1	-	4.226411921194286	11.003990175364475	CACCGTAGCATTGTT
chr20	3420233	3420234	chr20:3420234:T:C	rs527758640	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr20	3563693	3563694	chr20:3563694:G:A	rs13042627	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr20	3653636	3653637	chr20:3653637:A:G	rs583540	A	G	G	Sox1_MA0870.1	6	1	+	5.957020840984004	4.418414147843286	CACAGTAACAGTGTC
chr20	3653650	3653651	chr20:3653651:C:T	rs2853207	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr20	3675237	3675238	chr20:3675238:G:A	chr20:3675238:G:A	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr20	3705105	3705106	chr20:3705106:A:G	rs6052019	A	G	A	Sox1_MA0870.1	5	1	-	3.980667425781187	-2.922497332866571	GGCACTAGGATTGCT
chr20	3705127	3705128	chr20:3705128:C:G	rs6052020	C	G	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr20	3783048	3783049	chr20:3783049:G:A	rs74316544	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr20	3783094	3783095	chr20:3783095:T:C	rs138739393	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr20	3936333	3936334	chr20:3936334:A:T	rs241609	A	T	A	Sox1_MA0870.1	30	0	+	0	0	.
chr20	3965176	3965177	chr20:3965177:T:C	rs6052196	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr20	3980989	3980990	chr20:3980990:G:A	rs62210559	G	A	g	Sox1_MA0870.1	34	0	-	0	0	.
chr20	4066491	4066492	chr20:4066492:C:T	rs34444919	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr20	4066512	4066513	chr20:4066513:C:G	rs4352290	C	G	G	Sox1_MA0870.1	12	1	-	6.223591364403607	-0.6851634149116143	CCCAATGACATCGTT
chr20	4129575	4129576	chr20:4129576:C:G	rs1741342	C	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr20	4379168	4379169	chr20:4379169:T:C	rs3848821	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr20	4452319	4452320	chr20:4452320:C:T	rs297672	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr20	4554435	4554436	chr20:4554436:G:T	rs115489289	G	T	G	Sox1_MA0870.1	18	0	-	0	0	.
chr20	4602879	4602880	chr20:4602880:C:A	rs34599214	C	A	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr20	4645560	4645561	chr20:4645561:G:A	rs6107505	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr20	4681326	4681327	chr20:4681327:G:C	rs145341944	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr20	4788530	4788531	chr20:4788531:G:C	rs6139553	G	C	G	Sox1_MA0870.1	29	0	+	0	0	.
chr20	4890350	4890351	chr20:4890351:C:G	rs1776958	C	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr20	4890351	4890352	chr20:4890352:T:C	rs72552208	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr20	4949958	4949959	chr20:4949959:C:T	rs1715394	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr20	5043590	5043591	chr20:5043591:C:T	rs404678	C	T	C	Sox1_MA0870.1	6	1	-	3.3344636426701677	4.873070335810885	ACCAAGGACATTGCT
chr20	5127570	5127571	chr20:5127571:G:A	rs74894064	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr20	5659763	5659764	chr20:5659764:T:C	rs16991150	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	5787165	5787166	chr20:5787166:G:A	rs6053692	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr20	5804036	5804037	chr20:5804037:G:A	rs4813780	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr20	5806689	5806690	chr20:5806690:T:C	rs1151949	T	C	T	Sox1_MA0870.1	11	1	+	5.342103307699708	0.3867083218893739	CACCATGTCATTGCA
chr20	5806701	5806702	chr20:5806702:G:T	chr20:5806702:G:T	G	T	G	Sox1_MA0870.1	23	0	+	0	0	.
chr20	6418846	6418847	chr20:6418847:T:C	rs2876032	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr20	6446870	6446871	chr20:6446871:C:T	rs6054255	C	T	C	Sox1_MA0870.1	4	1	+	5.828834471193215	1.0080691516482436	GTCACTTTCATTGCG
chr20	6533477	6533478	chr20:6533478:C:T	rs118035811	C	T	C	Sox1_MA0870.1	2	1	+	3.6445937947153344	-3.2641609845998865	ATCACTGGCATTTTT
chr20	6673169	6673170	chr20:6673170:G:A	rs11698137	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr20	6714678	6714679	chr20:6714679:G:T	chr20:6714679:G:T	G	T	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr20	6747134	6747135	chr20:6747135:T:C	rs6107868	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr20	6786706	6786707	chr20:6786707:C:T	rs57667344	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr20	7022549	7022550	chr20:7022550:T:C	rs2876070	T	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr20	7085708	7085709	chr20:7085709:C:T	rs148050731	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr20	7229120	7229121	chr20:7229121:G:A	rs112284783	G	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr20	7295035	7295036	chr20:7295036:G:C	rs724084	G	C	G	Sox1_MA0870.1	8	1	-	3.387879089436303	-0.3826239034640342	ATCAATAGCTGTGTC
chr20	7295053	7295054	chr20:7295054:G:A	rs724085	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr20	7463416	7463417	chr20:7463417:C:A	rs2326929	C	A	c	Sox1_MA0870.1	24	0	-	0	0	.
chr20	7477632	7477633	chr20:7477633:A:T	rs6086059	A	T	A	Sox1_MA0870.1	15	0	+	0	0	.
chr20	7490489	7490490	chr20:7490490:T:G	rs6086068	T	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr20	7586224	7586225	chr20:7586225:C:T	rs6117863	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr20	7760328	7760329	chr20:7760329:A:G	rs11087784	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr20	7923930	7923931	chr20:7923931:C:T	rs2247673	C	T	T	Sox1_MA0870.1	30	0	-	0	0	.
chr20	7945494	7945495	chr20:7945495:A:G	rs2423337	A	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr20	8044122	8044123	chr20:8044123:G:A	rs6039019	G	A	A	Sox1_MA0870.1	7	1	-	4.385211189724587	4.373382137176214	AGCAATACCATTTTA
chr20	8061775	8061776	chr20:8061776:C:T	rs6039021	C	T	T	Sox1_MA0870.1	14	1	-	5.5461038782626275	5.370772641195583	AACAATAACAATGGG
chr20	8314887	8314888	chr20:8314888:T:C	rs1509116	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr20	8400434	8400435	chr20:8400435:T:C	rs150620942	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	8569889	8569890	chr20:8569890:G:A	rs6086505	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr20	8667324	8667325	chr20:8667325:T:C	rs6055987	T	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr20	8667331	8667332	chr20:8667332:A:G	rs13043435	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr20	8744221	8744222	chr20:8744222:T:C	rs6039247	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr20	8851593	8851594	chr20:8851594:T:C	rs111933672	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr20	9200283	9200284	chr20:9200284:G:A	rs62194769	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr20	9612055	9612056	chr20:9612056:C:G	rs6056756	C	G	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr20	9686731	9686732	chr20:9686732:C:T	rs880168	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr20	9701199	9701200	chr20:9701200:A:G	rs8120907	A	G	G	Sox1_MA0870.1	11	1	-	7.442824467014987	2.487429481204653	AACACTTTCATTTTT
chr20	9917024	9917025	chr20:9917025:T:C	rs6118804	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr20	10367460	10367461	chr20:10367461:T:A	rs117342853	T	A	T	Sox1_MA0870.1	27	0	-	0	0	.
chr20	10504302	10504303	chr20:10504303:A:C	rs73076940	A	C	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr20	10800582	10800583	chr20:10800583:C:T	rs2423518	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr20	10853749	10853750	chr20:10853750:T:C	rs6040200	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	10861936	10861937	chr20:10861937:G:A	rs6108722	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr20	11045215	11045216	chr20:11045216:T:C	rs209941	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr20	11047432	11047433	chr20:11047433:C:G	rs6040319	C	G	T	Sox1_MA0870.1	20	0	-	0	0	.
chr20	11212901	11212902	chr20:11212902:T:G	rs8183455	T	G	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr20	11503949	11503950	chr20:11503950:G:A	rs145276342	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr20	11738898	11738899	chr20:11738899:A:C	rs2423600	A	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr20	11755312	11755313	chr20:11755313:G:C	rs112378439	G	C	G	Sox1_MA0870.1	26	0	+	0	0	.
chr20	11783305	11783306	chr20:11783306:G:C	rs151039441	G	C	G	Sox1_MA0870.1	31	0	+	0	0	.
chr20	11794730	11794731	chr20:11794731:G:A	rs6033228	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr20	11842784	11842785	chr20:11842785:C:T	rs16992747	C	T	T	Sox1_MA0870.1	12	1	+	6.145312876496138	6.145312876496138	GACACTTGCATTCTT
chr20	11842805	11842806	chr20:11842806:C:G	rs7268819	C	G	C	Sox1_MA0870.1	33	0	+	0	0	.
chr20	11929661	11929662	chr20:11929662:T:C	rs1883791	T	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr20	11952909	11952910	chr20:11952910:A:G	rs60093772	A	G	g	Sox1_MA0870.1	28	0	-	0	0	.
chr20	11994218	11994219	chr20:11994219:A:C	rs12624901	A	C	A	Sox1_MA0870.1	6	1	+	9.96638009561636	4.577181092783158	AACCATACCAGTGTT
chr20	12012444	12012445	chr20:12012445:G:A	rs1158499840	G	A	G	Sox1_MA0870.1	12	1	+	6.438409823432499	-0.47034495588272185	CTCAATTCCATTGGG
chr20	12093565	12093566	chr20:12093566:A:G	rs6041087	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr20	12398203	12398204	chr20:12398204:C:A	rs6131331	C	A	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr20	12526769	12526770	chr20:12526770:G:A	rs62217158	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr20	12929426	12929427	chr20:12929427:G:A	rs62201676	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr20	12929593	12929594	chr20:12929594:C:A	rs165555	C	A	C	Sox1_MA0870.1	2	1	+	4.795752544942571	-2.113002234372648	ATCCCTACCATTGCT
chr20	12941125	12941126	chr20:12941126:C:G	rs77061725	C	G	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr20	12984456	12984457	chr20:12984457:A:T	rs3848750	A	T	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr20	13008601	13008602	chr20:13008602:C:T	rs6078875	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr20	13008609	13008610	chr20:13008610:A:G	rs6074544	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	13206108	13206109	chr20:13206109:C:T	rs77407593	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr20	13252285	13252286	chr20:13252286:G:A	rs4814211	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr20	13289193	13289194	chr20:13289194:T:C	rs56181119	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr20	13458969	13458970	chr20:13458970:C:G	rs1884796	C	G	G	Sox1_MA0870.1	12	1	-	7.073750039922533	0.1649952606073123	GACACTATCCTTGTT
chr20	13479205	13479206	chr20:13479206:T:C	rs6109905	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr20	13485254	13485255	chr20:13485255:C:T	rs6109908	C	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr20	13581676	13581677	chr20:13581677:C:A	rs112723315	C	A	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr20	14204175	14204176	chr20:14204176:G:A	rs6079351	G	A	g	Sox1_MA0870.1	23	0	+	0	0	.
chr20	14383390	14383391	chr20:14383391:C:G	rs62207627	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr20	14383395	14383396	chr20:14383396:G:A	rs62207628	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr20	14646198	14646199	chr20:14646199:C:A	rs1932935	C	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr20	14708348	14708349	chr20:14708349:C:A	rs6042874	C	A	C	Sox1_MA0870.1	28	0	-	0	0	.
chr20	14711759	14711760	chr20:14711760:A:G	rs140950875	A	G	A	Sox1_MA0870.1	9	1	+	9.575425479073141	2.66667069975792	AACAGTTGCATTGTT
chr20	14764968	14764969	chr20:14764969:G:A	rs78019035	G	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr20	14863371	14863372	chr20:14863372:T:C	rs442467	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr20	14919157	14919158	chr20:14919158:C:A	rs6034063	C	A	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr20	15242128	15242129	chr20:15242129:A:G	rs175308	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr20	15257764	15257765	chr20:15257765:A:G	rs55990401	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr20	15297340	15297341	chr20:15297341:G:A	rs6079737	G	A	g	Sox1_MA0870.1	-6	0	-	0	0	.
chr20	15317701	15317702	chr20:15317702:C:G	rs6131661	C	G	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr20	15365018	15365019	chr20:15365019:C:A	rs2423958	C	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr20	15365020	15365021	chr20:15365021:T:G	rs62203484	T	G	T	Sox1_MA0870.1	16	0	-	0	0	.
chr20	15365049	15365050	chr20:15365050:A:G	rs6079788	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr20	15528464	15528465	chr20:15528465:T:C	rs6110655	T	C	T	Sox1_MA0870.1	4	1	-	3.22843653971905	-3.549141714451137	GCCAATAGCACTGCT
chr20	15539437	15539438	chr20:15539438:T:C	rs6043350	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr20	15556604	15556605	chr20:15556605:A:G	rs563458261	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr20	15576532	15576533	chr20:15576533:T:C	rs7272772	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr20	15593069	15593070	chr20:15593070:A:G	rs451214	A	G	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr20	15740316	15740317	chr20:15740317:A:G	rs13036467	A	G	A	Sox1_MA0870.1	10	1	-	6.889095542136941	0.08039845800060819	AAGACTGCCATTGTT
chr20	15843101	15843102	chr20:15843102:G:A	rs117516401	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr20	15843128	15843129	chr20:15843129:A:G	rs175818	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr20	15943986	15943987	chr20:15943987:T:C	rs8117004	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr20	16023674	16023675	chr20:16023675:G:A	rs708980	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr20	16146197	16146198	chr20:16146198:G:C	rs1323304	G	C	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	16195626	16195627	chr20:16195627:C:A	rs116436394	C	A	C	Sox1_MA0870.1	17	0	+	0	0	.
chr20	16205732	16205733	chr20:16205733:G:A	rs4814454	G	A	A	Sox1_MA0870.1	7	1	-	4.637778835850579	4.625949783302206	TGCACTTCCATTGCC
chr20	16583564	16583565	chr20:16583565:C:A	rs4814512	C	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr20	16918922	16918923	chr20:16918923:A:C	rs2224306	A	C	A	Sox1_MA0870.1	11	1	-	9.58764975409384	2.6849170672370075	AACCATGACATTGTC
chr20	16944937	16944938	chr20:16944938:T:A	chr20:16944938:T:A	T	A	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr20	17339411	17339412	chr20:17339412:T:C	rs6075193	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr20	17371375	17371376	chr20:17371376:A:G	rs62201010	A	G	a	Sox1_MA0870.1	-12	0	-	0	0	.
chr20	17557795	17557796	chr20:17557796:C:G	rs756181351	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr20	17557796	17557797	chr20:17557797:G:C	rs190834953	G	C	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	17722022	17722023	chr20:17722023:A:G	rs73093520	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr20	17722062	17722063	chr20:17722063:T:G	rs78719261	T	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr20	17776082	17776083	chr20:17776083:T:G	rs2745832	T	G	T	Sox1_MA0870.1	9	1	-	3.4536706307291603	-3.4550841485860606	AGCCCTTCCATTGTG
chr20	17850370	17850371	chr20:17850371:C:T	rs79517174	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr20	17850399	17850400	chr20:17850400:C:T	chr20:17850400:C:T	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr20	17850414	17850415	chr20:17850415:C:T	rs2618595	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr20	17911232	17911233	chr20:17911233:G:A	rs886755338	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr20	17965010	17965011	chr20:17965011:C:T	rs6105850	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr20	17966502	17966503	chr20:17966503:C:A	rs112615599	C	A	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr20	17999919	17999920	chr20:17999920:A:G	rs6111783	A	G	A	Sox1_MA0870.1	4	1	+	3.4475009511400816	-3.330077303030108	AGCCATTCCATTGCC
chr20	17999941	17999942	chr20:17999942:G:T	rs6080929	G	T	T	Sox1_MA0870.1	26	0	+	0	0	.
chr20	18012815	18012816	chr20:18012816:A:G	rs8120836	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr20	18063282	18063283	chr20:18063283:C:T	rs6045173	C	T	t	Sox1_MA0870.1	29	0	+	0	0	.
chr20	18203006	18203007	chr20:18203007:G:A	rs6045247	G	A	A	Sox1_MA0870.1	4	1	-	4.267806567786355	-0.5529587517586166	GCCACTGCCAGTGCT
chr20	18287879	18287880	chr20:18287880:A:G	rs368948005	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr20	18588954	18588955	chr20:18588955:T:C	rs963435	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr20	18927073	18927074	chr20:18927074:A:T	rs6075429	A	T	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr20	19454827	19454828	chr20:19454828:A:T	rs1883692	A	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr20	19524972	19524973	chr20:19524973:G:A	rs761219	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr20	19533260	19533261	chr20:19533261:T:G	rs3790252	T	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr20	19590114	19590115	chr20:19590115:T:A	rs62200270	T	A	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	19690407	19690408	chr20:19690408:A:G	rs1535244	A	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr20	19779060	19779061	chr20:19779061:A:G	rs1980588	A	G	G	Sox1_MA0870.1	22	0	-	0	0	.
chr20	19784615	19784616	chr20:19784616:G:A	rs530382110	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr20	19884287	19884288	chr20:19884288:G:A	rs150985976	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr20	19918323	19918324	chr20:19918324:C:T	rs371321066	C	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr20	19981327	19981328	chr20:19981328:A:G	rs199594	A	G	A	Sox1_MA0870.1	11	1	-	10.721741225802703	5.7663462399923695	AACAATTTCAGTGAT
chr20	19981346	19981347	chr20:19981347:C:T	rs199595	C	T	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	19990767	19990768	chr20:19990768:G:A	rs2424252	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr20	20216255	20216256	chr20:20216256:C:T	rs2424291	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr20	21017739	21017740	chr20:21017740:T:C	rs6132378	T	C	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr20	21202428	21202429	chr20:21202429:A:G	rs781709893	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	22375472	22375473	chr20:22375473:C:T	rs56176631	C	T	C	Sox1_MA0870.1	2	1	+	3.923046026757238	-2.9857087525579833	GACACTTTCTTTGCT
chr20	22447364	22447365	chr20:22447365:A:T	rs77437251	A	T	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr20	22486390	22486391	chr20:22486391:T:A	rs8117208	T	A	A	Sox1_MA0870.1	9	1	-	6.963562174187975	0.05480739487275388	AGCAATTTCATTGAA
chr20	22586598	22586599	chr20:22586599:T:C	rs76417740	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr20	22611791	22611792	chr20:22611792:G:T	rs1203936	G	T	G	Sox1_MA0870.1	4	1	-	7.520067899195934	9.476880833821149	AACACTAGGATTGCA
chr20	22620339	22620340	chr20:22620340:A:C	rs1203946	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr20	22719579	22719580	chr20:22719580:A:G	rs1983923	A	G	G	Sox1_MA0870.1	1	1	+	7.9055488753950485	3.8072582200019065	CACCCTGACATTGTT
chr20	23022194	23022195	chr20:23022195:C:G	rs13036275	C	G	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr20	23136027	23136028	chr20:23136028:A:T	rs844900	A	T	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr20	23225277	23225278	chr20:23225278:C:T	rs7272365	C	T	C	Sox1_MA0870.1	14	1	+	3.2004308402045414	4.711440244685946	AACACTGCCATTCCC
chr20	23258723	23258724	chr20:23258724:G:T	rs10485643	G	T	G	Sox1_MA0870.1	26	0	+	0	0	.
chr20	23628342	23628343	chr20:23628343:C:T	rs2424574	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr20	23629263	23629264	chr20:23629264:G:A	rs114895328	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr20	23652594	23652595	chr20:23652595:C:T	rs73102376	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr20	23652607	23652608	chr20:23652608:T:C	rs73102379	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr20	23719781	23719782	chr20:23719782:C:T	rs6083232	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr20	23833173	23833174	chr20:23833174:A:G	rs141521279	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr20	23877790	23877791	chr20:23877791:A:G	rs2285059	A	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	23937816	23937817	chr20:23937817:T:A	rs2258909	T	A	T	Sox1_MA0870.1	15	0	-	0	0	.
chr20	24006222	24006223	chr20:24006223:A:C	rs28516591	A	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr20	24007234	24007235	chr20:24007235:T:C	rs6114405	T	C	t	Sox1_MA0870.1	17	0	-	0	0	.
chr20	24007235	24007236	chr20:24007236:G:A	rs117108891	G	A	g	Sox1_MA0870.1	16	0	-	0	0	.
chr20	24008012	24008013	chr20:24008013:T:G	rs574562679	T	G	T	Sox1_MA0870.1	9	1	-	5.328630214458153	-1.5801245648570674	GACAAGAGCAGTGTC
chr20	24011529	24011530	chr20:24011530:A:G	rs147318566	A	G	a	Sox1_MA0870.1	10	1	-	4.668951802236717	-2.1397452818996165	ATCAATTACATAGTA
chr20	24049094	24049095	chr20:24049095:T:G	rs59581206	T	G	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr20	24331723	24331724	chr20:24331724:A:G	rs6083492	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr20	24518084	24518085	chr20:24518085:C:A	rs6049752	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	24670881	24670882	chr20:24670882:T:C	rs35954840	T	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr20	24675117	24675118	chr20:24675118:T:C	rs6036878	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr20	24690489	24690490	chr20:24690490:C:T	rs13045834	C	T	t	Sox1_MA0870.1	22	0	-	0	0	.
chr20	24696343	24696344	chr20:24696344:G:A	rs112270330	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr20	24727486	24727487	chr20:24727487:T:C	rs565041722	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr20	24745206	24745207	chr20:24745207:T:C	rs4813531	T	C	C	Sox1_MA0870.1	13	1	+	7.895836424961827	5.718181127510833	AACATTGACATTGTC
chr20	24754702	24754703	chr20:24754703:G:T	rs2424667	G	T	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr20	24916118	24916119	chr20:24916119:C:T	rs8119761	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr20	24930981	24930982	chr20:24930982:T:C	rs227625	T	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr20	24999232	24999233	chr20:24999233:A:G	rs6037004	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr20	25052502	25052503	chr20:25052503:T:C	rs73906068	T	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr20	25055724	25055725	chr20:25055725:T:C	rs73906074	T	C	T	Sox1_MA0870.1	3	1	-	4.500842514702242	-2.3997471524949825	AAGAATACCAGTGGT
chr20	25230190	25230191	chr20:25230191:A:G	rs6115094	A	G	a	Sox1_MA0870.1	-2	0	+	0	0	.
chr20	25238177	25238178	chr20:25238178:C:G	rs6050471	C	G	T	Sox1_MA0870.1	19	0	-	0	0	.
chr20	25286086	25286087	chr20:25286087:C:T	rs67184896	C	T	.	Sox1_MA0870.1	-15	0	+	0	0	.
chr20	25355050	25355051	chr20:25355051:A:G	rs6037095	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr20	25369688	25369689	chr20:25369689:G:A	rs4815412	G	A	g	Sox1_MA0870.1	-7	0	-	0	0	.
chr20	25398367	25398368	chr20:25398368:T:C	rs2387883	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr20	25467061	25467062	chr20:25467062:C:T	rs118007615	C	T	C	Sox1_MA0870.1	13	1	+	3.27869150518171	5.456346802632705	AACACAGACAGTGCC
chr20	25551830	25551831	chr20:25551831:G:A	rs117725244	G	A	G	Sox1_MA0870.1	2	1	-	6.18261671629689	-0.7261380630183313	CACACTGACAATGTT
chr20	25567130	25567131	chr20:25567131:A:G	rs6132845	A	G	A	Sox1_MA0870.1	4	1	+	7.038989143313719	0.2614108891435284	AACAATACCTTTGAT
chr20	25660095	25660096	chr20:25660096:C:G	rs6115241	C	G	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr20	26295340	26295341	chr20:26295341:T:C	rs6084108	T	C	.	Sox1_MA0870.1	17	0	-	0	0	.
chr20	26297691	26297692	chr20:26297692:G:A	rs528993352	G	A	.	Sox1_MA0870.1	30	0	-	0	0	.
chr20	26340695	26340696	chr20:26340696:C:T	rs1277164624	C	T	.	Sox1_MA0870.1	25	0	-	0	0	.
chr20	26469074	26469075	chr20:26469075:G:T	rs1324913643	G	T	.	Sox1_MA0870.1	25	0	-	0	0	.
chr20	26469098	26469099	chr20:26469099:T:G	rs1454154845	T	G	.	Sox1_MA0870.1	1	1	-	5.4559754934247255	1.6868351085802273	CACAAAAAGAGTGTT
chr20	26631495	26631496	chr20:26631496:T:A	rs1301364166	T	A	.	Sox1_MA0870.1	21	0	-	0	0	.
chr20	28562981	28562982	chr20:28562982:C:T	rs1265811049	C	T	.	Sox1_MA0870.1	0	1	-	5.82630470892005	7.168427851726802	GTCAATTGTATTGTG
chr20	28609422	28609423	chr20:28609423:T:G	rs1461100775	T	G	.	Sox1_MA0870.1	22	0	+	0	0	.
chr20	28695493	28695494	chr20:28695494:G:A	rs1217468755	G	A	.	Sox1_MA0870.1	24	0	-	0	0	.
chr20	28804567	28804568	chr20:28804568:A:G	rs879189245	A	G	.	Sox1_MA0870.1	1	1	+	8.524101729177582	4.425811073784441	TACAAAAACAGTGTT
chr20	28825564	28825565	chr20:28825565:G:A	rs1359050195	G	A	.	Sox1_MA0870.1	23	0	+	0	0	.
chr20	28832133	28832134	chr20:28832134:C:T	rs1186216499	C	T	.	Sox1_MA0870.1	-18	0	-	0	0	.
chr20	28841706	28841707	chr20:28841707:G:A	rs1437056816	G	A	.	Sox1_MA0870.1	0	1	-	5.4559754934247255	4.753598736277245	CACAAAAAGAGTGTT
chr20	28871535	28871536	chr20:28871536:C:T	rs1389189454	C	T	.	Sox1_MA0870.1	21	0	+	0	0	.
chr20	28938188	28938189	chr20:28938189:T:A	rs1416025071	T	A	.	Sox1_MA0870.1	9	1	-	4.753598736277245	-2.1551560430379744	TACAAAAAGAGTGTT
chr20	29120592	29120593	chr20:29120593:G:A	rs1327476296	G	A	.	Sox1_MA0870.1	-2	0	+	0	0	.
chr20	29204976	29204977	chr20:29204977:T:C	rs1278462877	T	C	.	Sox1_MA0870.1	-4	0	-	0	0	.
chr20	29206157	29206158	chr20:29206158:A:G	rs1274930150	A	G	.	Sox1_MA0870.1	13	1	-	4.753598736277245	2.575943438826251	TACAAAAAGAGTGTT
chr20	29263108	29263109	chr20:29263109:C:G	rs1222384103	C	G	.	Sox1_MA0870.1	10	1	-	5.4559754934247255	0.888403337851953	CACAAAAAGAGTGTT
chr20	29263947	29263948	chr20:29263948:T:C	rs1383267253	T	C	.	Sox1_MA0870.1	23	0	-	0	0	.
chr20	29307264	29307265	chr20:29307265:C:G	rs1430939789	C	G	.	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	29329861	29329862	chr20:29329862:C:G	rs879060105	C	G	.	Sox1_MA0870.1	-9	0	+	0	0	.
chr20	29876511	29876512	chr20:29876512:G:A	rs1460358818	G	A	.	Sox1_MA0870.1	0	1	+	7.175577389319505	8.517700532126259	GCCACTGCCATTGTC
chr20	29906764	29906765	chr20:29906765:G:C	rs1395206730	G	C	.	Sox1_MA0870.1	-1	0	-	0	0	.
chr20	30500619	30500620	chr20:30500620:A:G	rs879022409	A	G	.	Sox1_MA0870.1	-9	0	+	0	0	.
chr20	30941576	30941577	chr20:30941577:T:C	rs1324571086	T	C	.	Sox1_MA0870.1	29	0	+	0	0	.
chr20	31053380	31053381	chr20:31053381:T:A	rs941958388	T	A	.	Sox1_MA0870.1	14	1	-	7.607955669337852	9.508968994123	TACACTTACATTGAA
chr20	31053382	31053383	chr20:31053383:C:G	rs1359600266	C	G	.	Sox1_MA0870.1	12	1	-	7.607955669337852	0.6992008900226314	TACACTTACATTGAA
chr20	31053898	31053899	chr20:31053899:G:T	rs894772238	G	T	.	Sox1_MA0870.1	7	1	-	7.025594258404054	7.455355085940092	TTCAATTCCATTGCA
chr20	31055242	31055243	chr20:31055243:G:T	rs991441904	G	T	.	Sox1_MA0870.1	22	0	-	0	0	.
chr20	31058787	31058788	chr20:31058788:C:G	rs1310366425	C	G	.	Sox1_MA0870.1	25	0	-	0	0	.
chr20	31058821	31058822	chr20:31058822:A:C	rs1273849235	A	C	.	Sox1_MA0870.1	-9	0	-	0	0	.
chr20	31059534	31059535	chr20:31059535:G:C	chr20:31059535:G:C	G	C	.	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	31062027	31062028	chr20:31062028:T:C	chr20:31062028:T:C	T	C	.	Sox1_MA0870.1	19	0	-	0	0	.
chr20	31062033	31062034	chr20:31062034:A:G	rs1264175895	A	G	.	Sox1_MA0870.1	13	1	-	6.018497955602021	3.840842658151027	TTCCATTCCATTGTT
chr20	31062691	31062692	chr20:31062692:G:A	rs1416128291	G	A	.	Sox1_MA0870.1	0	1	-	9.62898434033668	8.9266075831892	CTCAATTCCATTGCT
chr20	31068315	31068316	chr20:31068316:G:C	chr20:31068316:G:C	G	C	.	Sox1_MA0870.1	17	0	-	0	0	.
chr20	31068327	31068328	chr20:31068328:A:G	chr20:31068328:A:G	A	G	.	Sox1_MA0870.1	5	1	-	7.025594258404054	0.12242949975629402	TTCAATTCCATTGCA
chr20	31068330	31068331	chr20:31068331:G:C	chr20:31068331:G:C	G	C	.	Sox1_MA0870.1	2	1	-	7.025594258404054	0.11683947908883363	TTCAATTCCATTGCA
chr20	31072106	31072107	chr20:31072107:G:T	rs1330426383	G	T	.	Sox1_MA0870.1	4	1	-	9.111990666326493	11.06880360095171	TACACTTGCATTGAT
chr20	31072587	31072588	chr20:31072588:T:C	chr20:31072588:T:C	T	C	.	Sox1_MA0870.1	33	0	-	0	0	.
chr20	31075222	31075223	chr20:31075223:C:G	rs943611828	C	G	.	Sox1_MA0870.1	7	1	-	7.058376758143585	7.025594258404054	TTCAATTGCATTGCA
chr20	31075829	31075830	chr20:31075830:C:A	chr20:31075830:C:A	C	A	.	Sox1_MA0870.1	19	0	-	0	0	.
chr20	31075839	31075840	chr20:31075840:T:A	chr20:31075840:T:A	T	A	.	Sox1_MA0870.1	9	1	-	5.2052845279786455	-1.7034702513365758	TACCATTTCATTGCA
chr20	31075856	31075857	chr20:31075857:G:T	rs1369081153	G	T	.	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	31187185	31187186	chr20:31187186:T:C	rs1410202764	T	C	.	Sox1_MA0870.1	7	1	-	5.092818707004099	4.695840379207591	TACACTCACATTGAT
chr20	31567323	31567324	chr20:31567324:C:T	rs545804263	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr20	31855669	31855670	chr20:31855670:C:G	rs4911533	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr20	31885384	31885385	chr20:31885385:T:C	rs6061015	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr20	32162542	32162543	chr20:32162543:C:T	rs6061197	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr20	32368875	32368876	chr20:32368876:A:G	chr20:32368876:A:G	A	G	A	Sox1_MA0870.1	13	1	-	6.431889866294233	4.2542345688432395	GACAATTTCACTGTG
chr20	32437427	32437428	chr20:32437428:T:C	rs2295763	T	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr20	32738166	32738167	chr20:32738167:C:A	rs558208068	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr20	32823376	32823377	chr20:32823377:C:T	rs566714217	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr20	32823385	32823386	chr20:32823386:A:G	rs1160187508	A	G	A	Sox1_MA0870.1	11	1	-	2.906336952129171	-2.0490580336811632	AACATTACCAGTGGG
chr20	32858935	32858936	chr20:32858936:G:C	rs3746386	G	C	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	32972976	32972977	chr20:32972977:C:T	rs11906313	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr20	33191719	33191720	chr20:33191720:G:A	rs76593342	G	A	G	Sox1_MA0870.1	2	1	-	5.286727621507153	-1.622027157808067	CACGCTATCATTGTA
chr20	33238220	33238221	chr20:33238221:T:C	rs6059183	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr20	33271966	33271967	chr20:33271967:A:T	rs78206376	A	T	A	Sox1_MA0870.1	0	1	+	7.259344548479946	5.320670442777486	ATCAAAATCATTGTG
chr20	33277890	33277891	chr20:33277891:G:A	rs7262822	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr20	33345473	33345474	chr20:33345474:T:C	rs293728	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr20	33891986	33891987	chr20:33891987:C:A	rs3888736	C	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr20	34074144	34074145	chr20:34074145:T:A	rs2284391	T	A	T	Sox1_MA0870.1	11	1	-	4.476483793551813	11.379216480408644	CACACTTACATAGCT
chr20	34233010	34233011	chr20:34233011:G:A	rs146960153	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr20	34314559	34314560	chr20:34314560:G:C	rs77301717	G	C	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr20	34314573	34314574	chr20:34314574:T:C	rs73263386	T	C	T	Sox1_MA0870.1	11	1	+	5.741650095418908	0.7862551096085745	CCCACAAACATTGTT
chr20	34843595	34843596	chr20:34843596:A:G	rs192101467	A	G	a	Sox1_MA0870.1	-14	0	+	0	0	.
chr20	35145532	35145533	chr20:35145533:T:C	rs118025823	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr20	35200546	35200547	chr20:35200547:A:T	rs6060304	A	T	T	Sox1_MA0870.1	2	1	+	3.519113453422662	3.519113453422662	CAAAATGTCATTGCA
chr20	35280120	35280121	chr20:35280121:G:A	rs2250205	G	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr20	35514475	35514476	chr20:35514476:T:G	rs528242926	T	G	T	Sox1_MA0870.1	4	1	-	7.1312013161739785	5.174388381548763	AACAAGAACATTGCC
chr20	35672326	35672327	chr20:35672327:G:A	rs116886776	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr20	35698328	35698329	chr20:35698329:G:T	rs56116518	G	T	G	Sox1_MA0870.1	1	1	-	3.5658121624219663	7.3349525472664645	GCCACTGGCATTGGC
chr20	36260193	36260194	chr20:36260194:C:T	rs2425193	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr20	36405404	36405405	chr20:36405405:G:A	rs187229941	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr20	36405405	36405406	chr20:36405406:A:C	rs192493554	A	C	A	Sox1_MA0870.1	31	0	-	0	0	.
chr20	36836822	36836823	chr20:36836823:T:C	rs187366352	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr20	36836833	36836834	chr20:36836834:T:C	rs191906463	T	C	T	Sox1_MA0870.1	14	1	-	8.879632089576447	9.05496332664349	CACAATGGGATTGTA
chr20	36860601	36860602	chr20:36860602:A:G	rs1146264	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr20	37181379	37181380	chr20:37181380:T:C	rs6031882	T	C	.	Sox1_MA0870.1	9	1	-	5.594240078838064	-1.3145147004771558	TACACATACAGTGTT
chr20	37218614	37218615	chr20:37218615:C:G	rs112719061	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr20	37912391	37912392	chr20:37912392:G:A	rs8114158	G	A	a	Sox1_MA0870.1	19	0	-	0	0	.
chr20	37993413	37993414	chr20:37993414:A:G	rs149780900	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr20	38181036	38181037	chr20:38181037:C:T	rs1883485	C	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr20	38275048	38275049	chr20:38275049:T:G	rs77333306	T	G	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr20	38278670	38278671	chr20:38278671:G:C	rs1341020	G	C	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr20	38278679	38278680	chr20:38278680:G:A	rs1038884716	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr20	38287696	38287697	chr20:38287697:T:C	rs73283280	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr20	38356646	38356647	chr20:38356647:C:T	rs76585941	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr20	38733629	38733630	chr20:38733630:C:G	rs75630410	C	G	C	Sox1_MA0870.1	30	0	+	0	0	.
chr20	38752811	38752812	chr20:38752812:A:G	rs2757518	A	G	a	Sox1_MA0870.1	10	1	-	6.262560748610339	-0.5461363355259954	CACAGTGGCATTGTC
chr20	38776537	38776538	chr20:38776538:C:T	rs150307045	C	T	T	Sox1_MA0870.1	13	1	+	3.8451683924641724	6.022823689915166	AACAAAAACATCGCG
chr20	38835170	38835171	chr20:38835171:G:T	rs4812316	G	T	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr20	38848113	38848114	chr20:38848114:C:T	rs1286774016	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr20	38929250	38929251	chr20:38929251:A:G	rs67343649	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr20	39045323	39045324	chr20:39045324:A:G	rs6129158	A	G	A	Sox1_MA0870.1	4	1	+	5.674957949237119	-1.1026203049330694	ACCAATACGATTGCA
chr20	39046352	39046353	chr20:39046353:C:G	rs8118808	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr20	39046367	39046368	chr20:39046368:A:T	rs6129159	A	T	T	Sox1_MA0870.1	13	1	-	5.9834010223142515	2.637874995725092	AAGACTTACATTGTA
chr20	39048681	39048682	chr20:39048682:T:C	rs138786193	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr20	39426371	39426372	chr20:39426372:A:C	rs2143215	A	C	C	Sox1_MA0870.1	1	1	+	5.132168858438585	1.3630284735940852	AACAATATCATGGAA
chr20	39658796	39658797	chr20:39658797:T:C	rs927290	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr20	39668612	39668613	chr20:39668613:A:G	rs1123102	A	G	G	Sox1_MA0870.1	0	1	+	9.439611982584783	8.097488839778029	AACAAAGACATTGTG
chr20	39796228	39796229	chr20:39796229:C:T	rs10485661	C	T	C	Sox1_MA0870.1	5	1	+	4.430117847670632	11.333282606318392	AACAACATGATTGCT
chr20	40080359	40080360	chr20:40080360:G:A	rs16988767	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr20	40263131	40263132	chr20:40263132:T:G	rs6016305	T	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr20	40781630	40781631	chr20:40781631:T:C	rs74167718	T	C	C	Sox1_MA0870.1	1	1	-	5.5690307620779755	1.470740106684834	CACTCTGGCATTGTC
chr20	40848842	40848843	chr20:40848843:A:C	rs7270566	A	C	A	Sox1_MA0870.1	33	0	-	0	0	.
chr20	40940889	40940890	chr20:40940890:G:A	rs6102227	G	A	A	Sox1_MA0870.1	8	1	-	3.535522684529813	-0.6460868621074692	CACACTAGCATTACC
chr20	40951946	40951947	chr20:40951947:G:A	rs6065290	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr20	40994696	40994697	chr20:40994697:A:G	rs6124299	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr20	41030178	41030179	chr20:41030179:T:C	rs79866880	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr20	41201169	41201170	chr20:41201170:C:T	rs6072306	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr20	41318121	41318122	chr20:41318122:C:G	chr20:41318122:C:G	C	G	C	Sox1_MA0870.1	2	1	+	8.371281814393276	1.4625270350780566	TCCAATTCCAGTGTT
chr20	41500589	41500590	chr20:41500590:G:C	rs1010901	G	C	G	Sox1_MA0870.1	28	0	-	0	0	.
chr20	41891333	41891334	chr20:41891334:T:G	rs6093531	T	G	T	Sox1_MA0870.1	1	1	+	5.156727764490903	4.335721356258901	TTGAATATCATTGTT
chr20	41891422	41891423	chr20:41891423:C:A	rs10485683	C	A	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr20	42095582	42095583	chr20:42095583:T:C	rs8124637	T	C	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	42099454	42099455	chr20:42099455:A:G	rs876523	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr20	42391686	42391687	chr20:42391687:A:G	rs16986829	A	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr20	42442184	42442185	chr20:42442185:C:A	rs187683710	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr20	42742144	42742145	chr20:42742145:T:C	rs973263	T	C	t	Sox1_MA0870.1	21	0	+	0	0	.
chr20	42742146	42742147	chr20:42742147:C:G	rs2208983	C	G	g	Sox1_MA0870.1	23	0	+	0	0	.
chr20	43306342	43306343	chr20:43306343:A:C	rs6130338	A	C	A	Sox1_MA0870.1	28	0	+	0	0	.
chr20	43538595	43538596	chr20:43538596:C:T	rs2269625	C	T	T	Sox1_MA0870.1	24	0	+	0	0	.
chr20	43541213	43541214	chr20:43541214:A:G	rs117851581	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr20	43821830	43821831	chr20:43821831:A:G	rs6093885	A	G	A	Sox1_MA0870.1	10	1	-	5.994542308986952	-0.8141547751493823	CTCAATGCCATTGAA
chr20	43910847	43910848	chr20:43910848:C:G	rs11086902	C	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr20	43910852	43910853	chr20:43910853:C:T	rs11086903	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr20	43922998	43922999	chr20:43922999:C:T	rs73908111	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr20	43963098	43963099	chr20:43963099:G:T	rs1410400717	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr20	44010642	44010643	chr20:44010643:C:T	rs150600758	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr20	44129600	44129601	chr20:44129601:G:A	rs761210	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr20	44143392	44143393	chr20:44143393:G:A	rs74398108	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	44356714	44356715	chr20:44356715:A:G	rs6031546	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr20	44410303	44410304	chr20:44410304:C:A	rs3212192	C	A	C	Sox1_MA0870.1	31	0	-	0	0	.
chr20	44560700	44560701	chr20:44560701:C:T	rs244122	C	T	C	Sox1_MA0870.1	8	1	+	5.49233561915503	1.3107260725177472	CACAATAGCCTTGCC
chr20	44664486	44664487	chr20:44664487:G:C	rs75076579	G	C	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr20	44777134	44777135	chr20:44777135:G:C	rs140327843	G	C	G	Sox1_MA0870.1	14	1	-	4.415680732107306	4.201008048870607	AACACTGACATCGAC
chr20	44840988	44840989	chr20:44840989:T:C	rs6103887	T	C	T	Sox1_MA0870.1	10	1	+	3.576121498894852	-3.2325755852414813	AGCATTTGCATTGTA
chr20	44977386	44977387	chr20:44977387:T:G	rs182068889	T	G	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	45014557	45014558	chr20:45014558:G:A	rs34864931	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	45049641	45049642	chr20:45049642:T:C	rs2299977	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr20	45049686	45049687	chr20:45049687:A:C	rs183317848	A	C	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr20	45128160	45128161	chr20:45128161:T:C	rs6104024	T	C	T	Sox1_MA0870.1	14	1	+	4.6876533480799365	3.176643943598532	GCCAATAGTATTGAT
chr20	45306296	45306297	chr20:45306297:T:C	rs2233085	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr20	45347026	45347027	chr20:45347027:A:C	rs1981430	A	C	A	Sox1_MA0870.1	6	1	+	5.9386521811286315	0.549453178295429	CACAGTAAGATTGTT
chr20	45347052	45347053	chr20:45347053:G:T	rs1981429	G	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr20	45354927	45354928	chr20:45354928:G:T	rs8123741	G	T	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr20	45379791	45379792	chr20:45379792:G:A	rs2741639	G	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr20	45489270	45489271	chr20:45489271:T:A	rs113418595	T	A	t	Sox1_MA0870.1	32	0	+	0	0	.
chr20	45635550	45635551	chr20:45635551:G:A	rs6017637	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	45799308	45799309	chr20:45799309:A:C	rs73306471	A	C	A	Sox1_MA0870.1	11	1	-	3.977231242444817	-2.925501444412015	CACACTTCCTGTGTT
chr20	45817171	45817172	chr20:45817172:T:C	rs188681934	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr20	46001124	46001125	chr20:46001125:T:C	rs73295268	T	C	T	Sox1_MA0870.1	9	1	-	4.01721331002003	-2.89154146929519	GTTAATAACATTGCT
chr20	46703692	46703693	chr20:46703693:T:C	rs112143500	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	46754235	46754236	chr20:46754236:A:T	rs11086180	A	T	A	Sox1_MA0870.1	25	0	-	0	0	.
chr20	46760998	46760999	chr20:46760999:C:A	rs4810554	C	A	A	Sox1_MA0870.1	15	0	+	0	0	.
chr20	46788631	46788632	chr20:46788632:A:G	rs1307213501	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr20	46810735	46810736	chr20:46810736:C:A	rs6094487	C	A	C	Sox1_MA0870.1	13	1	+	6.987147900594061	5.819277171455896	CACAATTTTATTGCG
chr20	46831683	46831684	chr20:46831684:G:A	rs6066084	G	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr20	46840450	46840451	chr20:46840451:A:G	rs3092038	A	G	A	Sox1_MA0870.1	4	1	+	5.214986503374611	-1.5625917507955762	AACCATGACAGTGGT
chr20	47020542	47020543	chr20:47020543:T:C	rs6094559	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr20	47028787	47028788	chr20:47028788:G:A	rs78802481	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr20	47029997	47029998	chr20:47029998:A:G	rs4810589	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr20	47118484	47118485	chr20:47118485:C:G	rs6122555	C	G	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr20	47297238	47297239	chr20:47297239:G:A	rs900886229	G	A	G	Sox1_MA0870.1	12	1	+	8.876362400675525	1.9676076213603038	TACAATATCATCGTC
chr20	47336289	47336290	chr20:47336290:C:T	rs140915989	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr20	47544841	47544842	chr20:47544842:A:G	rs1930125	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr20	47610876	47610877	chr20:47610877:G:A	rs6066408	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr20	47674739	47674740	chr20:47674740:G:T	rs77513685	G	T	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr20	47681181	47681182	chr20:47681182:G:A	rs73913415	G	A	G	Sox1_MA0870.1	8	1	-	8.272428098952698	4.090818552315414	TACAATGCCATTGGA
chr20	47878736	47878737	chr20:47878737:T:C	rs76779746	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr20	47887971	47887972	chr20:47887972:C:A	rs2426003	C	A	A	Sox1_MA0870.1	30	0	+	0	0	.
chr20	47895075	47895076	chr20:47895076:G:C	rs972588624	G	C	-	Sox1_MA0870.1	16	0	-	0	0	.
chr20	47895104	47895105	chr20:47895105:G:C	rs1192315343	G	C	-	Sox1_MA0870.1	-13	0	-	0	0	.
chr20	47895394	47895395	chr20:47895395:G:T	rs4810725	G	T	-	Sox1_MA0870.1	-9	0	-	0	0	.
chr20	47991052	47991053	chr20:47991053:C:T	rs4810744	C	T	C	Sox1_MA0870.1	14	1	-	7.718566866210004	7.54323562914296	AACAATTGCTTTGTG
chr20	48159932	48159933	chr20:48159933:G:A	rs228194	G	A	A	Sox1_MA0870.1	30	0	-	0	0	.
chr20	48437518	48437519	chr20:48437519:C:T	rs1321006	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr20	48503233	48503234	chr20:48503234:G:A	rs993236165	G	A	g	Sox1_MA0870.1	23	0	+	0	0	.
chr20	48505270	48505271	chr20:48505271:C:A	rs1181808486	C	A	-	Sox1_MA0870.1	2	1	+	6.306558287156417	-0.6021964921588056	TACAACAGCATTGCT
chr20	48513427	48513428	chr20:48513428:G:C	rs1190898161	G	C	-	Sox1_MA0870.1	23	0	+	0	0	.
chr20	48538896	48538897	chr20:48538897:T:C	rs16993895	T	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr20	48620519	48620520	chr20:48620520:C:T	rs562474371	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr20	48737910	48737911	chr20:48737911:A:G	rs79895253	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr20	48764452	48764453	chr20:48764453:T:C	rs6019409	T	C	t	Sox1_MA0870.1	10	1	+	8.977560087489227	2.1688630033528935	ATCAATAGCATTGAG
chr20	48809588	48809589	chr20:48809589:T:G	rs16994152	T	G	T	Sox1_MA0870.1	18	0	-	0	0	.
chr20	48939405	48939406	chr20:48939406:C:T	rs6019543	C	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr20	49460874	49460875	chr20:49460875:C:T	rs79171734	C	T	c	Sox1_MA0870.1	-12	0	+	0	0	.
chr20	49587529	49587530	chr20:49587530:C:T	rs496242	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr20	49704747	49704748	chr20:49704748:A:C	rs6067189	A	C	-	Sox1_MA0870.1	1	1	+	3.556445795617209	-0.212694589227291	AACCACAACATTGCT
chr20	49805142	49805143	chr20:49805143:C:T	rs7264383	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr20	49848281	49848282	chr20:49848282:G:T	rs6020085	G	T	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr20	49848383	49848384	chr20:49848384:A:G	rs184343568	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr20	49859728	49859729	chr20:49859729:C:G	rs686996	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr20	49892978	49892979	chr20:49892979:G:C	rs479007	G	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	49920716	49920717	chr20:49920717:T:C	rs6067270	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr20	49993755	49993756	chr20:49993756:A:G	rs6067309	A	G	A	Sox1_MA0870.1	14	1	+	4.662929709778328	4.838260946845372	ATCAATTACATTTTA
chr20	50195544	50195545	chr20:50195545:G:C	rs75545976	G	C	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	50215597	50215598	chr20:50215598:C:T	rs11699802	C	T	T	Sox1_MA0870.1	27	0	+	0	0	.
chr20	50355147	50355148	chr20:50355148:G:T	rs4809781	G	T	N	Sox1_MA0870.1	-7	0	-	0	0	.
chr20	50445746	50445747	chr20:50445747:G:A	rs6095951	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr20	50492455	50492456	chr20:50492456:A:G	rs111953176	A	G	A	Sox1_MA0870.1	4	1	+	5.327645686008495	-1.449932568161692	CTCAATTACATTCTT
chr20	50521511	50521512	chr20:50521512:A:G	rs2426157	A	G	A	Sox1_MA0870.1	9	1	+	5.070046084902932	-1.8387086944122886	CACTATGGCAGTGTG
chr20	50563527	50563528	chr20:50563528:T:C	rs2145697	T	C	C	Sox1_MA0870.1	13	1	+	4.889692697340273	2.712037399889278	ACCAATACCATTATG
chr20	50600965	50600966	chr20:50600966:T:C	rs118150973	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr20	50610373	50610374	chr20:50610374:T:C	rs1108895	T	C	C	Sox1_MA0870.1	4	1	-	5.514812765370289	-1.2627654887998987	TCCCATTTCATTGTT
chr20	50610383	50610384	chr20:50610384:C:G	rs1108894	C	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr20	50980789	50980790	chr20:50980790:G:A	rs989954860	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr20	51026155	51026156	chr20:51026156:G:C	rs6091250	G	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr20	51339179	51339180	chr20:51339180:A:G	rs4811159	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr20	51345654	51345655	chr20:51345655:G:A	rs6067743	G	A	A	Sox1_MA0870.1	8	1	-	3.8820678522508087	-0.29954169438647293	GCCCATTCCAGTGTT
chr20	51345664	51345665	chr20:51345665:G:A	rs144787155	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr20	51345676	51345677	chr20:51345677:C:T	rs76265181	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr20	51410451	51410452	chr20:51410452:G:C	rs2426307	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr20	51418210	51418211	chr20:51418211:T:C	rs36000730	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr20	51484107	51484108	chr20:51484108:G:A	rs76103140	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr20	51668751	51668752	chr20:51668752:T:C	rs910079344	T	C	T	Sox1_MA0870.1	5	1	-	3.8267784634516238	1.9427437181143983	AACAAAGCCCTTGTT
chr20	51711724	51711725	chr20:51711725:T:C	rs192575491	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr20	51875240	51875241	chr20:51875241:G:C	rs6021528	G	C	C	Sox1_MA0870.1	2	1	+	4.213888474089757	11.122643253404977	TAGAATTACATTGCC
chr20	51996823	51996824	chr20:51996824:T:C	rs6068038	T	C	T	Sox1_MA0870.1	14	1	-	5.269381675825579	5.444712912892623	GACACTTGCAGTGGA
chr20	52179647	52179648	chr20:52179648:G:A	rs12481281	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr20	52305130	52305131	chr20:52305131:T:C	rs115451095	T	C	T	Sox1_MA0870.1	1	1	-	3.935746159740491	-0.16254449565264972	TACAATTACAGTTTG
chr20	52425499	52425500	chr20:52425500:C:T	rs368793309	C	T	C	Sox1_MA0870.1	4	1	+	4.018178854302346	-0.8025864652426252	CACGCTTGCAGTGTT
chr20	52484442	52484443	chr20:52484443:C:T	rs74687627	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr20	52634419	52634420	chr20:52634420:G:A	rs856429	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr20	52643333	52643334	chr20:52643334:T:C	rs60499716	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr20	52688325	52688326	chr20:52688326:C:T	rs78938668	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr20	52942151	52942152	chr20:52942152:A:G	rs2002694	A	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr20	52964390	52964391	chr20:52964391:A:C	rs753143495	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr20	53001182	53001183	chr20:53001183:A:G	rs6013591	A	G	A	Sox1_MA0870.1	10	1	+	7.437052893774625	12.004625049347398	TACAATGACAATGTT
chr20	53001194	53001195	chr20:53001195:C:T	rs62206631	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr20	53162556	53162557	chr20:53162557:G:A	chr20:53162557:G:A	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr20	53188181	53188182	chr20:53188182:G:A	rs1293382	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr20	53426164	53426165	chr20:53426165:G:C	rs77936907	G	C	G	Sox1_MA0870.1	25	0	-	0	0	.
chr20	53446156	53446157	chr20:53446157:G:T	chr20:53446157:G:T	G	T	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr20	53735570	53735571	chr20:53735571:T:C	rs7265045	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr20	53786294	53786295	chr20:53786295:A:G	rs1053144781	A	G	A	Sox1_MA0870.1	4	1	+	5.058523650749532	-1.7190546034206573	ATCAAGTACATTGTC
chr20	53911680	53911681	chr20:53911681:G:T	rs1476719	G	T	T	Sox1_MA0870.1	1	1	+	4.554303394910718	5.37530980314272	AGCAAGATCATTGTG
chr20	53911689	53911690	chr20:53911690:T:C	rs6068718	T	C	T	Sox1_MA0870.1	10	1	+	4.554303394910718	-2.2543936892256133	AGCAAGATCATTGTG
chr20	53911693	53911694	chr20:53911694:G:C	rs1476718	G	C	C	Sox1_MA0870.1	14	1	+	4.554303394910718	4.768976078147418	AGCAAGATCATTGTG
chr20	54069264	54069265	chr20:54069265:C:G	rs6123353	C	G	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr20	54183060	54183061	chr20:54183061:C:G	rs1555438	C	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr20	54220069	54220070	chr20:54220070:T:A	rs1032212729	T	A	T	Sox1_MA0870.1	11	1	+	12.413921090713083	5.51118840385625	AACAATGAGATTGTT
chr20	54228543	54228544	chr20:54228544:A:G	rs374623	A	G	G	Sox1_MA0870.1	9	1	+	5.12165704632023	-1.787097732994991	AACAATAATATTATC
chr20	54263272	54263273	chr20:54263273:T:C	rs1477730	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr20	54269510	54269511	chr20:54269511:A:G	rs292136	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr20	54310962	54310963	chr20:54310963:T:A	rs28470915	T	A	T	Sox1_MA0870.1	0	1	+	6.176871088304052	8.115545194006513	TACAATTACATTCTG
chr20	54716216	54716217	chr20:54716217:G:A	rs2143709	G	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr20	55002480	55002481	chr20:55002481:T:C	rs6127367	T	C	C	Sox1_MA0870.1	10	1	+	3.8151206320230053	-2.993576452113328	GATAATGCCATTGCC
chr20	55067660	55067661	chr20:55067661:A:G	rs78023978	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr20	55641829	55641830	chr20:55641830:T:C	rs6064252	T	C	C	Sox1_MA0870.1	13	1	+	3.645793708848542	1.4681384113975482	CACAAGATGATTGTG
chr20	56273299	56273300	chr20:56273300:C:T	rs2094184	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr20	56386484	56386485	chr20:56386485:A:T	rs2273535	A	T	A	Sox1_MA0870.1	5	1	-	3.7903373417656563	-1.228792671544878	AGCAATTTCCTTGTC
chr20	56691624	56691625	chr20:56691625:T:C	rs6025069	T	C	C	Sox1_MA0870.1	14	1	+	4.0366977432687285	2.5256883387873237	AATATTAACATTGTT
chr20	56724349	56724350	chr20:56724350:A:G	rs2426662	A	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr20	56780377	56780378	chr20:56780378:T:A	rs2426677	T	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr20	56858292	56858293	chr20:56858293:G:A	rs75042534	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr20	56952742	56952743	chr20:56952743:A:G	rs6099369	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr20	56988015	56988016	chr20:56988016:G:A	chr20:56988016:G:A	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr20	56988019	56988020	chr20:56988020:C:T	rs1276423	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr20	57110804	57110805	chr20:57110805:T:C	rs62203922	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr20	57479751	57479752	chr20:57479752:C:A	rs78251101	C	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr20	57482001	57482002	chr20:57482002:C:G	rs1417939563	C	G	C	Sox1_MA0870.1	1	1	+	3.552440211916372	3.2232899413677294	CCCAAAGCCATTGCT
chr20	57577855	57577856	chr20:57577856:T:C	rs189310159	T	C	t	Sox1_MA0870.1	5	1	+	4.875648319360163	-2.0275164392875955	AACACTGCCAGCGTG
chr20	57628632	57628633	chr20:57628633:C:T	rs6128103	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr20	57924826	57924827	chr20:57924827:T:G	chr20:57924827:T:G	T	G	T	Sox1_MA0870.1	0	1	-	3.9565269095764397	2.7202295610214606	ATCAATTCCATTCCT
chr20	57976242	57976243	chr20:57976243:C:A	rs6025956	C	A	C	Sox1_MA0870.1	4	1	+	2.9677571131950575	4.924570047820273	CACACTAGGAGTGGC
chr20	58071264	58071265	chr20:58071265:G:A	rs111238857	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr20	58109033	58109034	chr20:58109034:T:A	rs6015197	T	A	a	Sox1_MA0870.1	0	1	-	4.456071468378242	2.5173973626757813	AACAATTCCATCTTT
chr20	58376705	58376706	chr20:58376706:C:T	rs4811987	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr20	58548970	58548971	chr20:58548971:A:G	rs1123030	A	G	G	Sox1_MA0870.1	22	0	-	0	0	.
chr20	58652433	58652434	chr20:58652434:T:C	rs1330417595	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr20	58702965	58702966	chr20:58702966:G:A	rs77212705	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr20	58746364	58746365	chr20:58746365:C:G	rs12625683	C	G	C	Sox1_MA0870.1	0	1	+	6.66415970115219	6.558333906900417	CAAAATTCCATTGTC
chr20	58787114	58787115	chr20:58787115:T:C	rs6070600	T	C	T	Sox1_MA0870.1	4	1	-	6.2432164131864685	-0.5343618409837193	AACAATAGGAGTGAG
chr20	59024346	59024347	chr20:59024347:G:A	rs6070697	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr20	59087924	59087925	chr20:59087925:A:G	rs4449199	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr20	59163457	59163458	chr20:59163458:A:G	rs150784118	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr20	59173828	59173829	chr20:59173829:G:A	rs73306889	G	A	g	Sox1_MA0870.1	29	0	-	0	0	.
chr20	59361591	59361592	chr20:59361592:A:G	rs3026517	A	G	A	Sox1_MA0870.1	10	1	-	6.310724704475122	-0.497972379661212	CACTATTACATTGCC
chr20	59406575	59406576	chr20:59406576:T:G	rs75177828	T	G	T	Sox1_MA0870.1	29	0	-	0	0	.
chr20	59406597	59406598	chr20:59406598:C:A	rs4810168	C	A	C	Sox1_MA0870.1	7	1	-	5.309780721851898	5.2651691695639915	AACACTTGCCTTGCT
chr20	59427929	59427930	chr20:59427930:A:G	rs271982	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr20	59780505	59780506	chr20:59780506:A:G	rs6100581	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr20	59780558	59780559	chr20:59780559:T:C	rs6092824	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr20	59812086	59812087	chr20:59812087:C:T	rs6123946	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr20	59813481	59813482	chr20:59813482:A:G	rs1338929	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr20	59828154	59828155	chr20:59828155:G:C	rs6123953	G	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr20	59832277	59832278	chr20:59832278:G:A	rs752338	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr20	59966675	59966676	chr20:59966676:T:C	rs146520441	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr20	60011598	60011599	chr20:60011599:C:T	rs73131342	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr20	60084137	60084138	chr20:60084138:C:T	rs78513871	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr20	60321656	60321657	chr20:60321657:A:G	rs6027506	A	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr20	60332268	60332269	chr20:60332269:A:G	rs145606961	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr20	60396489	60396490	chr20:60396490:A:T	rs2076865	A	T	A	Sox1_MA0870.1	6	1	-	4.394640162008636	5.367688877722936	CCCAAATCCATTGTA
chr20	60510190	60510191	chr20:60510191:T:A	chr20:60510191:T:A	T	A	T	Sox1_MA0870.1	19	0	-	0	0	.
chr20	60694139	60694140	chr20:60694140:A:C	rs17802507	A	C	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr20	60694169	60694170	chr20:60694170:T:C	rs62205646	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr20	60695549	60695550	chr20:60695550:T:G	rs1201898	T	G	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr20	60920204	60920205	chr20:60920205:C:T	rs6124032	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr20	60942261	60942262	chr20:60942262:T:G	rs237644	T	G	T	Sox1_MA0870.1	31	0	+	0	0	.
chr20	61087708	61087709	chr20:61087709:T:G	rs17805061	T	G	G	Sox1_MA0870.1	11	1	+	3.4658744669611106	-3.436858219895722	GGAAATAGCATTGTC
chr20	61287901	61287902	chr20:61287902:A:C	rs2427030	A	C	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr20	61289159	61289160	chr20:61289160:C:A	rs6101295	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr20	61337953	61337954	chr20:61337954:A:G	rs6028126	A	G	A	Sox1_MA0870.1	3	1	+	4.324464890016866	-2.57612477718036	CACAATAGCATTTAC
chr20	61404370	61404371	chr20:61404371:C:T	rs76294338	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr20	61404578	61404579	chr20:61404579:A:T	rs141933255	A	T	A	Sox1_MA0870.1	21	0	+	0	0	.
chr20	61419111	61419112	chr20:61419112:T:G	rs2427086	T	G	T	Sox1_MA0870.1	19	0	+	0	0	.
chr20	61657930	61657931	chr20:61657931:A:G	rs949823	A	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr20	61757939	61757940	chr20:61757940:G:A	rs78770067	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr20	61774376	61774377	chr20:61774377:G:A	rs13038571	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr20	61774422	61774423	chr20:61774423:C:T	rs6142855	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr20	61786209	61786210	chr20:61786210:G:T	rs1891576	G	T	T	Sox1_MA0870.1	12	1	+	3.7694373695602077	-3.139317409755013	GGCACTTCCATTGGC
chr20	61835428	61835429	chr20:61835429:G:A	rs34471004	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr20	61835463	61835464	chr20:61835464:G:A	rs34140814	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr20	61860032	61860033	chr20:61860033:G:A	rs78688375	G	A	G	Sox1_MA0870.1	5	1	+	3.351469694469701	5.2355044398069275	AACAAGGACAGTGCC
chr20	62009749	62009750	chr20:62009750:G:A	rs6061398	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr20	62030060	62030061	chr20:62030061:C:T	rs73152429	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr20	62043820	62043821	chr20:62043821:G:A	rs6061980	G	A	G	Sox1_MA0870.1	3	1	+	5.595169714483795	12.49575938168102	AACGATGACATTGCC
chr20	62059528	62059529	chr20:62059529:G:C	rs148021829	G	C	G	Sox1_MA0870.1	18	0	+	0	0	.
chr20	62500122	62500123	chr20:62500123:C:T	rs1264260767	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr20	62831044	62831045	chr20:62831045:G:A	rs12481719	G	A	a	Sox1_MA0870.1	23	0	+	0	0	.
chr20	63123421	63123422	chr20:63123422:G:A	rs73919020	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr20	63137174	63137175	chr20:63137175:G:A	rs2427524	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr20	63297127	63297128	chr20:63297128:G:A	rs564670163	G	A	G	Sox1_MA0870.1	10	1	+	9.160303934041934	4.592731778469162	CACACTTCCAGTGTG
chr20	63503928	63503929	chr20:63503929:T:C	rs8126186	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr20	63591884	63591885	chr20:63591885:C:T	rs149462	C	T	C	Sox1_MA0870.1	5	1	+	3.042128028022231	9.94529278666999	CACAACAGCAGTGCG
chr20	63640026	63640027	chr20:63640027:A:G	rs1059250	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr20	63769789	63769790	chr20:63769790:C:T	rs6089982	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr20	63801532	63801533	chr20:63801533:T:C	rs6011124	T	C	C	Sox1_MA0870.1	14	1	-	5.641868837408725	5.817200074475769	AACACTTTCAATGTA
chr20	64138089	64138090	chr20:64138090:A:G	rs34668587	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr20	64214589	64214590	chr20:64214590:C:T	rs2983460	C	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr21	5243457	5243458	chr21:5243458:T:A	rs948091636	T	A	.	Sox1_MA0870.1	15	0	-	0	0	.
chr21	6375075	6375076	chr21:6375076:T:C	rs1239366877	T	C	.	Sox1_MA0870.1	20	0	+	0	0	.
chr21	6375081	6375082	chr21:6375082:C:G	rs1218999440	C	G	.	Sox1_MA0870.1	26	0	+	0	0	.
chr21	8524866	8524867	chr21:8524867:G:A	rs375303486	G	A	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr21	8995407	8995408	chr21:8995408:G:C	rs76556921	G	C	.	Sox1_MA0870.1	-8	0	-	0	0	.
chr21	8995411	8995412	chr21:8995412:A:C	rs77288100	A	C	.	Sox1_MA0870.1	-12	0	-	0	0	.
chr21	9000716	9000717	chr21:9000717:A:G	rs371505215	A	G	.	Sox1_MA0870.1	33	0	+	0	0	.
chr21	9000717	9000718	chr21:9000718:C:T	rs376044444	C	T	.	Sox1_MA0870.1	34	0	+	0	0	.
chr21	9330940	9330941	chr21:9330941:A:T	rs369243700	A	T	.	Sox1_MA0870.1	-19	0	+	0	0	.
chr21	9663555	9663556	chr21:9663556:C:T	rs1425773801	C	T	.	Sox1_MA0870.1	-19	0	+	0	0	.
chr21	10400939	10400940	chr21:10400940:T:C	rs1810530	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr21	10416532	10416533	chr21:10416533:T:C	rs4913584	T	C	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr21	10416560	10416561	chr21:10416561:G:A	rs2775403	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr21	10416565	10416566	chr21:10416566:T:A	rs28498040	T	A	T	Sox1_MA0870.1	22	0	+	0	0	.
chr21	10663710	10663711	chr21:10663711:C:T	rs28460337	C	T	.	Sox1_MA0870.1	-12	0	+	0	0	.
chr21	10784324	10784325	chr21:10784325:C:A	rs28869260	C	A	.	Sox1_MA0870.1	23	0	-	0	0	.
chr21	13539379	13539380	chr21:13539380:C:T	rs11702153	C	T	.	Sox1_MA0870.1	25	0	-	0	0	.
chr21	14013647	14013648	chr21:14013648:C:A	rs13048111	C	A	c	Sox1_MA0870.1	-12	0	+	0	0	.
chr21	14076538	14076539	chr21:14076539:T:C	rs62209925	T	C	c	Sox1_MA0870.1	-19	0	+	0	0	.
chr21	14452410	14452411	chr21:14452411:T:G	rs9305334	T	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr21	14583326	14583327	chr21:14583327:T:C	rs2822792	T	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr21	14681857	14681858	chr21:14681858:G:C	rs995045	G	C	C	Sox1_MA0870.1	2	1	-	7.553712258774825	0.6449574794596032	CACATTACCATTGTG
chr21	14962641	14962642	chr21:14962642:T:G	rs2822988	T	G	T	Sox1_MA0870.1	16	0	+	0	0	.
chr21	15290881	15290882	chr21:15290882:G:A	rs75011704	G	A	A	Sox1_MA0870.1	14	1	+	5.343885954603392	5.168554717536348	ACCTATTGCATTGTG
chr21	15301884	15301885	chr21:15301885:A:G	rs13049627	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr21	15355296	15355297	chr21:15355297:A:G	rs73177157	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr21	15496122	15496123	chr21:15496123:T:C	rs6650845	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr21	15628734	15628735	chr21:15628735:C:T	rs2823400	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr21	15659793	15659794	chr21:15659794:A:C	rs73892700	A	C	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr21	15682074	15682075	chr21:15682075:A:G	rs979585	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr21	15692431	15692432	chr21:15692432:G:A	rs114134170	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr21	15743429	15743430	chr21:15743430:T:A	rs7277813	T	A	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr21	16159407	16159408	chr21:16159408:C:T	rs78012105	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr21	16438989	16438990	chr21:16438990:A:C	rs13048531	A	C	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr21	16456236	16456237	chr21:16456237:C:T	rs1041539516	C	T	C	Sox1_MA0870.1	4	1	+	4.29580734034589	-0.5249579791990845	AACACTTACAATGCC
chr21	16474031	16474032	chr21:16474032:A:G	rs73380344	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr21	16916462	16916463	chr21:16916463:C:G	rs112805339	C	G	C	Sox1_MA0870.1	2	1	+	3.7302493629194706	-3.1785054163957502	AACACTGACACTGCC
chr21	17214971	17214972	chr21:17214972:A:G	rs75958703	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr21	17327454	17327455	chr21:17327455:A:C	rs59267060	A	C	A	Sox1_MA0870.1	28	0	+	0	0	.
chr21	17398508	17398509	chr21:17398509:A:C	rs208878	A	C	A	Sox1_MA0870.1	7	1	-	6.262326728300073	6.306938280587981	CACAATTTCATTTTA
chr21	17628362	17628363	chr21:17628363:A:G	rs9305824	A	G	G	Sox1_MA0870.1	5	1	-	4.384292583458723	-2.518872175189037	AACTATACCAGTGGC
chr21	17671916	17671917	chr21:17671917:G:A	rs2824434	G	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr21	17726630	17726631	chr21:17726631:C:T	rs13050074	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr21	17944687	17944688	chr21:17944688:T:C	rs1876037	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr21	17944728	17944729	chr21:17944729:C:T	rs9305833	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr21	17947878	17947879	chr21:17947879:T:C	rs59600048	T	C	t	Sox1_MA0870.1	29	0	-	0	0	.
chr21	18355235	18355236	chr21:18355236:C:G	rs8130490	C	G	G	Sox1_MA0870.1	28	0	-	0	0	.
chr21	18417974	18417975	chr21:18417975:A:C	rs2268437	A	C	A	Sox1_MA0870.1	25	0	-	0	0	.
chr21	18443674	18443675	chr21:18443675:C:T	rs983074196	C	T	c	Sox1_MA0870.1	33	0	+	0	0	.
chr21	18453744	18453745	chr21:18453745:C:A	rs77213481	C	A	C	Sox1_MA0870.1	12	1	-	4.197799737872846	-2.7109550414423738	GACCCTTGGATTGTT
chr21	18570386	18570387	chr21:18570387:C:T	rs2824916	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr21	18668516	18668517	chr21:18668517:C:T	rs11911711	C	T	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr21	19046047	19046048	chr21:19046048:G:A	rs73893496	G	A	g	Sox1_MA0870.1	-2	0	+	0	0	.
chr21	19046072	19046073	chr21:19046073:C:T	rs10854430	C	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr21	19215638	19215639	chr21:19215639:G:A	rs2825421	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr21	19262130	19262131	chr21:19262131:C:T	rs9653753	C	T	C	Sox1_MA0870.1	5	1	-	4.0319320794033064	5.915966824740533	CACAAGTGTATTGTT
chr21	19356889	19356890	chr21:19356890:A:C	rs856185	A	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr21	19548188	19548189	chr21:19548189:C:T	rs9305915	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr21	19820893	19820894	chr21:19820894:G:C	rs138749336	G	C	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr21	20781030	20781031	chr21:20781031:G:T	rs7280806	G	T	-	Sox1_MA0870.1	12	1	+	3.923046026757237	-2.9857087525579833	GAAACTTTCATTGCT
chr21	21000817	21000818	chr21:21000818:A:G	rs138426866	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr21	21042247	21042248	chr21:21042248:T:C	rs6518050	T	C	T	Sox1_MA0870.1	3	1	-	3.5562932368642954	-3.3442964303329297	GACAGTGCCATTGCA
chr21	21713461	21713462	chr21:21713462:A:C	chr21:21713462:A:C	A	C	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr21	21974207	21974208	chr21:21974208:G:A	rs2827166	G	A	.	Sox1_MA0870.1	13	1	-	4.080323912903307	6.257979210354302	GAAAATTACAGTGCT
chr21	22247472	22247473	chr21:22247473:C:T	rs75658980	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr21	22421859	22421860	chr21:22421860:C:A	rs963842	C	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr21	23175595	23175596	chr21:23175596:C:T	rs2135335	C	T	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr21	23438438	23438439	chr21:23438439:T:C	rs200709	T	C	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr21	23639979	23639980	chr21:23639980:G:A	rs8184926	G	A	G	Sox1_MA0870.1	4	1	-	4.037752509119027	-0.7830128104259453	TACACTTGCATTATC
chr21	23790275	23790276	chr21:23790276:G:C	rs1157278	G	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr21	24014047	24014048	chr21:24014048:A:G	rs34542175	A	G	a	Sox1_MA0870.1	4	1	+	4.962358125030275	-1.8152201291399126	ATCAATAGCATTTCT
chr21	24214388	24214389	chr21:24214389:G:A	rs73140923	G	A	A	Sox1_MA0870.1	15	0	+	0	0	.
chr21	24621995	24621996	chr21:24621996:T:A	rs7280627	T	A	t	Sox1_MA0870.1	23	0	-	0	0	.
chr21	24693982	24693983	chr21:24693983:T:G	rs2829266	T	G	G	Sox1_MA0870.1	16	0	-	0	0	.
chr21	24941856	24941857	chr21:24941857:T:G	rs2829472	T	G	T	Sox1_MA0870.1	16	0	+	0	0	.
chr21	25333018	25333019	chr21:25333019:T:C	rs7279152	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr21	25638799	25638800	chr21:25638800:A:G	rs974680	A	G	A	Sox1_MA0870.1	10	1	-	8.013310726437417	1.2046136423010858	CACACTTACATTGGA
chr21	25882067	25882068	chr21:25882068:A:G	rs45556936	A	G	A	Sox1_MA0870.1	10	1	-	6.305846547666734	-0.5028505364695998	AAAAATACCATTGCA
chr21	25882094	25882095	chr21:25882095:C:G	rs45610338	C	G	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr21	25888112	25888113	chr21:25888113:C:G	rs373958790	C	G	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr21	26077618	26077619	chr21:26077619:C:T	rs117349040	C	T	C	Sox1_MA0870.1	7	1	+	5.568624229601019	5.556795177052646	ATCAATGCCATTTTT
chr21	26099393	26099394	chr21:26099394:C:T	rs2830053	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr21	26128824	26128825	chr21:26128825:T:C	rs2830073	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr21	26135741	26135742	chr21:26135742:T:C	rs432766	T	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr21	26366087	26366088	chr21:26366088:C:T	rs62219377	C	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr21	26480404	26480405	chr21:26480405:A:G	rs966410	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr21	26658518	26658519	chr21:26658519:A:G	rs996632	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr21	26691870	26691871	chr21:26691871:T:C	rs2212809	T	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr21	26785434	26785435	chr21:26785435:G:A	rs2830502	G	A	G	Sox1_MA0870.1	7	1	-	6.031351943628975	6.019522891080602	CACCATTCCAGTGTG
chr21	26846923	26846924	chr21:26846924:T:C	rs985049763	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr21	27188122	27188123	chr21:27188123:G:A	rs73374980	G	A	a	Sox1_MA0870.1	6	1	+	5.755890864040452	7.294497557181171	GACAATGACATTTCT
chr21	27258102	27258103	chr21:27258103:A:T	rs2078299	A	T	A	Sox1_MA0870.1	21	0	-	0	0	.
chr21	27418603	27418604	chr21:27418604:G:T	rs2830927	G	T	T	Sox1_MA0870.1	2	1	-	6.648116998544419	-0.26063778077080235	CACACTTACATTTTT
chr21	27681637	27681638	chr21:27681638:G:A	rs10211858	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr21	27763598	27763599	chr21:27763599:C:T	rs2831152	C	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr21	27884859	27884860	chr21:27884860:T:G	rs4816309	T	G	G	Sox1_MA0870.1	27	0	-	0	0	.
chr21	27884890	27884891	chr21:27884891:G:A	rs4816310	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr21	27913518	27913519	chr21:27913519:A:T	rs6516794	A	T	T	Sox1_MA0870.1	26	0	+	0	0	.
chr21	28112135	28112136	chr21:28112136:A:C	rs2831507	A	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr21	28208311	28208312	chr21:28208312:C:A	rs994319045	C	A	C	Sox1_MA0870.1	30	0	-	0	0	.
chr21	28431337	28431338	chr21:28431338:G:T	rs1350656062	G	T	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr21	28436237	28436238	chr21:28436238:T:C	rs113362703	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr21	28637628	28637629	chr21:28637629:G:C	rs1153265	G	C	G	Sox1_MA0870.1	31	0	+	0	0	.
chr21	28684187	28684188	chr21:28684188:T:C	rs75977629	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr21	28742709	28742710	chr21:28742710:C:T	rs2832035	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr21	28743002	28743003	chr21:28743003:G:A	rs2832038	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr21	28749753	28749754	chr21:28749754:G:A	rs56103672	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr21	28762011	28762012	chr21:28762012:T:C	rs2832061	T	C	T	Sox1_MA0870.1	1	1	+	4.819195373636301	4.327339235952943	ATCTCTACCATTGTG
chr21	29257890	29257891	chr21:29257891:C:T	rs931793367	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr21	29372848	29372849	chr21:29372849:C:T	rs4817285	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr21	29387149	29387150	chr21:29387150:G:A	rs7278255	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr21	29548251	29548252	chr21:29548252:G:A	rs76041185	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr21	29679215	29679216	chr21:29679216:C:T	rs8128745	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr21	29892479	29892480	chr21:29892480:A:C	rs2300332	A	C	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr21	30400352	30400353	chr21:30400353:T:C	rs2832853	T	C	-	Sox1_MA0870.1	22	0	-	0	0	.
chr21	30489411	30489412	chr21:30489412:C:T	rs2832912	C	T	-	Sox1_MA0870.1	33	0	-	0	0	.
chr21	30979280	30979281	chr21:30979281:C:G	rs75486310	C	G	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr21	31337119	31337120	chr21:31337120:C:T	rs2833380	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr21	31364065	31364066	chr21:31364066:T:C	rs150424142	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr21	31408572	31408573	chr21:31408573:T:G	rs117007720	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr21	31408594	31408595	chr21:31408595:G:A	rs57073567	G	A	G	Sox1_MA0870.1	14	1	+	4.575012314004693	4.399681076937649	CTCAATAACATTTTG
chr21	31420602	31420603	chr21:31420603:G:T	rs7280668	G	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr21	31420613	31420614	chr21:31420614:C:T	rs2833404	C	T	T	Sox1_MA0870.1	10	1	-	10.179566886976202	5.6119947314034295	AACACTAACAGTGAT
chr21	31732610	31732611	chr21:31732611:C:T	rs113113068	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr21	31793020	31793021	chr21:31793021:T:C	rs2833509	T	C	T	Sox1_MA0870.1	10	1	+	3.69616527577708	-3.1125318083592517	CTCACTCTCATTGTG
chr21	31860773	31860774	chr21:31860774:C:G	rs12481924	C	G	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr21	32136816	32136817	chr21:32136817:G:A	rs78153639	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr21	32192400	32192401	chr21:32192401:C:T	rs78098177	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr21	32214747	32214748	chr21:32214748:A:G	rs7280607	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr21	32355930	32355931	chr21:32355931:G:A	rs7281529	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr21	32406108	32406109	chr21:32406109:T:C	rs73190648	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr21	32484954	32484955	chr21:32484955:T:C	rs138731764	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr21	32520449	32520450	chr21:32520450:G:A	rs13046819	G	A	G	Sox1_MA0870.1	1	1	-	5.143504793352582	5.635360931035941	CCCACTGACATTGCA
chr21	32546094	32546095	chr21:32546095:A:T	rs113696667	A	T	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr21	32575836	32575837	chr21:32575837:T:C	rs928777	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr21	33321335	33321336	chr21:33321336:C:T	rs73194016	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr21	33326079	33326080	chr21:33326080:C:A	rs12626750	C	A	C	Sox1_MA0870.1	2	1	+	5.999326170211815	-0.9094286091034058	CTCAATGAGATTGTA
chr21	33387569	33387570	chr21:33387570:A:G	rs11702844	A	G	A	Sox1_MA0870.1	9	1	+	4.940706294759444	-1.968048484555775	GACACTAGCATTTCT
chr21	33449383	33449384	chr21:33449384:G:C	rs1044213	G	C	G	Sox1_MA0870.1	26	0	-	0	0	.
chr21	33820460	33820461	chr21:33820461:T:C	rs9979906	T	C	t	Sox1_MA0870.1	-17	0	+	0	0	.
chr21	33844413	33844414	chr21:33844414:T:C	rs75628245	T	C	T	Sox1_MA0870.1	10	1	+	5.026368257070551	-1.7823288270657818	CACAAATGCATTGAG
chr21	34256576	34256577	chr21:34256577:A:G	rs2834425	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr21	34303001	34303002	chr21:34303002:T:G	rs8128536	T	G	T	Sox1_MA0870.1	11	1	+	4.184069091699833	-2.718663595157	AACAGTATCAGTGCA
chr21	34337990	34337991	chr21:34337991:G:A	rs2834456	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr21	34644535	34644536	chr21:34644536:A:G	rs2834561	A	G	A	Sox1_MA0870.1	9	1	+	5.92221512452166	-0.98653965479356	CATAATTTCAGTGTT
chr21	34783120	34783121	chr21:34783121:T:G	rs186099645	T	G	T	Sox1_MA0870.1	10	1	+	5.5204834082251555	3.279358479661595	AACACTCACATTGAC
chr21	35042482	35042483	chr21:35042483:C:G	rs11701532	C	G	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr21	35047640	35047641	chr21:35047641:G:A	rs977180066	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr21	35206533	35206534	chr21:35206534:T:A	rs8132151	T	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr21	35283680	35283681	chr21:35283681:A:G	rs73901926	A	G	A	Sox1_MA0870.1	6	1	+	14.132942165777433	12.594335472636715	CACACTAGCATTGTT
chr21	35314977	35314978	chr21:35314978:A:G	rs2834900	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr21	35617876	35617877	chr21:35617877:A:T	rs2142034	A	T	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr21	35834090	35834091	chr21:35834091:G:A	rs74276113	G	A	G	Sox1_MA0870.1	8	1	-	16.320221233503794	12.138611686866513	AACAATTCCATTGTT
chr21	36104770	36104771	chr21:36104771:C:T	rs67422184	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr21	36164109	36164110	chr21:36164110:T:C	rs2239567	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr21	36355078	36355079	chr21:36355079:G:A	rs137906468	G	A	G	Sox1_MA0870.1	7	1	+	3.923295990691357	4.320274318487864	AATAATGGCATCGTT
chr21	36458350	36458351	chr21:36458351:C:T	rs552539331	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr21	36479676	36479677	chr21:36479677:C:G	rs188733	C	G	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr21	36757640	36757641	chr21:36757641:C:A	rs2850103	C	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr21	36757728	36757729	chr21:36757729:C:A	rs2850104	C	A	C	Sox1_MA0870.1	12	1	-	6.201112486336208	-0.7076422929790129	GACAATTGCTTTGTA
chr21	36757759	36757760	chr21:36757760:A:G	rs2850105	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr21	36908518	36908519	chr21:36908519:T:C	rs115715506	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr21	37074280	37074281	chr21:37074281:T:C	rs1543748	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr21	37323477	37323478	chr21:37323478:A:G	rs9983788	A	G	A	Sox1_MA0870.1	14	1	-	4.096740164510367	2.5857307600289623	AGCAATATCATTTCT
chr21	37324945	37324946	chr21:37324946:G:C	rs12626508	G	C	G	Sox1_MA0870.1	32	0	-	0	0	.
chr21	37463091	37463092	chr21:37463092:G:A	rs2186338	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr21	37547031	37547032	chr21:37547032:A:G	rs111243825	A	G	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr21	37547082	37547083	chr21:37547083:C:T	rs189048440	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr21	37564739	37564740	chr21:37564740:G:A	rs140564833	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr21	37564741	37564742	chr21:37564742:C:T	rs1415094897	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr21	37647810	37647811	chr21:37647811:A:C	rs1709838	A	C	C	Sox1_MA0870.1	11	1	-	4.052542115580673	-2.8501905712761593	CACCATGTCATTGGG
chr21	38236501	38236502	chr21:38236502:T:A	rs2836228	T	A	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr21	38437437	38437438	chr21:38437438:C:T	rs12481820	C	T	C	Sox1_MA0870.1	4	1	+	3.312517624566177	-1.5082476949787955	AACACGAGCATTGGC
chr21	38531434	38531435	chr21:38531435:C:G	rs3787914	C	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr21	38800571	38800572	chr21:38800572:A:G	rs8133056	A	G	A	Sox1_MA0870.1	3	1	+	9.593253476158791	2.6926638089615658	TTCAATTCCATTGTC
chr21	38826218	38826219	chr21:38826219:A:G	rs2836687	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr21	38990253	38990254	chr21:38990254:C:A	rs116594496	C	A	C	Sox1_MA0870.1	19	0	-	0	0	.
chr21	39113006	39113007	chr21:39113007:G:T	rs1882772	G	T	G	Sox1_MA0870.1	20	0	-	0	0	.
chr21	39347792	39347793	chr21:39347793:C:A	rs79444431	C	A	C	Sox1_MA0870.1	2	1	+	3.318537358673038	-3.590217420642182	AACACTTCCAGAGTA
chr21	39350143	39350144	chr21:39350144:T:A	rs2239384	T	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr21	39563713	39563714	chr21:39563714:C:G	rs571227	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr21	39564424	39564425	chr21:39564425:T:A	rs73904052	T	A	T	Sox1_MA0870.1	21	0	+	0	0	.
chr21	39576140	39576141	chr21:39576141:G:A	rs551439	G	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr21	39852145	39852146	chr21:39852146:C:A	rs2837258	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr21	39923747	39923748	chr21:39923748:A:G	rs1888504	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr21	40012009	40012010	chr21:40012010:T:C	rs73221333	T	C	T	Sox1_MA0870.1	13	1	+	3.9981889654042995	1.8205336679533048	AGCTCTACCATTGTG
chr21	40178644	40178645	chr21:40178645:G:C	rs74770328	G	C	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr21	40194321	40194322	chr21:40194322:C:T	rs73364154	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr21	40194850	40194851	chr21:40194851:T:C	rs58906309	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr21	40194881	40194882	chr21:40194882:G:A	rs8127634	G	A	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr21	40283340	40283341	chr21:40283341:G:A	chr21:40283341:G:A	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr21	40537407	40537408	chr21:40537408:A:G	rs2837691	A	G	A	Sox1_MA0870.1	6	1	+	8.8574630628137	7.318856369672982	AAAACTAACATTGTT
chr21	40564294	40564295	chr21:40564295:T:C	rs17000004	T	C	t	Sox1_MA0870.1	-5	0	-	0	0	.
chr21	40588222	40588223	chr21:40588223:T:C	rs467253	T	C	C	Sox1_MA0870.1	11	1	+	3.81691014629325	-1.1384848395170835	TACAATTGCATTACC
chr21	41058083	41058084	chr21:41058084:A:C	rs2104809	A	C	A	Sox1_MA0870.1	31	0	+	0	0	.
chr21	41062262	41062263	chr21:41062263:A:G	rs965546	A	G	G	Sox1_MA0870.1	6	1	-	4.350125345962764	-0.066024941156138	CACACTTGCATTCTA
chr21	41113655	41113656	chr21:41113656:T:C	rs117429429	T	C	T	Sox1_MA0870.1	3	1	-	4.434012150436976	-2.4665775167602497	CCCACTAGCAGTGCC
chr21	41123775	41123776	chr21:41123776:T:A	rs112671966	T	A	T	Sox1_MA0870.1	11	1	+	11.0901666077617	4.187433920904869	GACAATGACAGTGTC
chr21	41147428	41147429	chr21:41147429:T:C	rs2837963	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr21	41147461	41147462	chr21:41147462:C:T	rs9982271	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr21	41183858	41183859	chr21:41183859:G:T	rs77865052	G	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr21	41388650	41388651	chr21:41388651:G:A	rs73370139	G	A	G	Sox1_MA0870.1	14	1	-	4.618684564291483	6.129693968772887	AACATTAGCAGTGCC
chr21	41397044	41397045	chr21:41397045:T:G	rs395834	T	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr21	41765464	41765465	chr21:41765465:A:T	rs8126778	A	T	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr21	41804859	41804860	chr21:41804860:C:A	rs34506941	C	A	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr21	41827058	41827059	chr21:41827059:A:G	rs28415259	A	G	G	Sox1_MA0870.1	1	1	-	4.828535044682105	4.336678906998745	ATCCCTAGCATTGCT
chr21	41846733	41846734	chr21:41846734:T:C	rs4920056	T	C	T	Sox1_MA0870.1	9	1	-	4.166379846189153	-2.7423749331260674	GCCCCTTCCATTGTT
chr21	41926584	41926585	chr21:41926585:G:A	rs193253532	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr21	41926595	41926596	chr21:41926596:A:C	rs140466968	A	C	A	Sox1_MA0870.1	0	1	+	3.897171148111239	2.660873799556259	AACTATTCCTTTGTT
chr21	41995773	41995774	chr21:41995774:T:C	rs6586290	T	C	C	Sox1_MA0870.1	3	1	-	4.129087808037361	-2.7715018591598635	CACAAAACCATTTTT
chr21	42142586	42142587	chr21:42142587:C:T	rs7280633	C	T	T	Sox1_MA0870.1	12	1	-	6.406335941438733	-0.5024188378764873	AACATTAGCAGTGTA
chr21	42174366	42174367	chr21:42174367:G:A	rs149696067	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr21	42356068	42356069	chr21:42356069:A:G	rs541798	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr21	42356069	42356070	chr21:42356070:G:A	rs691587	G	A	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr21	42464585	42464586	chr21:42464586:A:G	rs138233210	A	G	A	Sox1_MA0870.1	9	1	+	3.7563888796190397	-3.1523658996961803	CAGAATTCCAGTGCT
chr21	42532030	42532031	chr21:42532031:T:C	rs228048	T	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr21	42780650	42780651	chr21:42780651:G:C	rs9976680	G	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr21	42886585	42886586	chr21:42886586:C:G	rs1009828	C	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr21	43018678	43018679	chr21:43018679:A:G	rs1672136	A	G	A	Sox1_MA0870.1	10	1	-	9.667976945732535	2.859279861596202	CCCAATGACATTGTC
chr21	43267576	43267577	chr21:43267577:G:A	rs28620758	G	A	.	Sox1_MA0870.1	-15	0	+	0	0	.
chr21	43267582	43267583	chr21:43267583:A:C	rs28758875	A	C	.	Sox1_MA0870.1	-9	0	+	0	0	.
chr21	43311739	43311740	chr21:43311740:T:C	rs637345	T	C	.	Sox1_MA0870.1	10	1	+	8.242460217481568	1.4337631333452348	AACACTGTCATTGGA
chr21	43717056	43717057	chr21:43717057:T:G	rs73908376	T	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr21	44303799	44303800	chr21:44303800:T:C	rs2838545	T	C	C	Sox1_MA0870.1	9	1	-	3.942604394741451	-2.966150384573769	AACAAAATCAATGTC
chr21	44338159	44338160	chr21:44338160:C:A	rs115007048	C	A	C	Sox1_MA0870.1	10	1	-	3.7206580154411486	5.96178294400471	TACAATTCCCGTGTC
chr21	44497024	44497025	chr21:44497025:A:G	rs2329817	A	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr21	44552708	44552709	chr21:44552709:C:T	rs146660912	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr21	44596466	44596467	chr21:44596467:G:C	rs60703712	G	C	C	Sox1_MA0870.1	6	1	+	5.320323076414426	1.4697307667219415	GACAATGTCATGGCT
chr21	44659611	44659612	chr21:44659612:C:T	rs112720679	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr21	44678182	44678183	chr21:44678183:A:G	rs73234839	A	G	A	Sox1_MA0870.1	14	1	-	4.691614253743433	3.1806048492620285	ATCAATAGGAGTGAT
chr21	44761093	44761094	chr21:44761094:A:G	rs2838674	A	G	A	Sox1_MA0870.1	0	1	+	7.794748509418654	6.452625366611901	AACAGTTACATTGCT
chr21	44848090	44848091	chr21:44848091:G:C	rs144057873	G	C	G	Sox1_MA0870.1	22	0	-	0	0	.
chr21	44848849	44848850	chr21:44848850:G:C	rs79591481	G	C	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr21	44848867	44848868	chr21:44848868:T:C	rs9980195	T	C	T	Sox1_MA0870.1	5	1	+	4.8595278616318165	-2.0436368970159435	CACCATAGCAGTGCG
chr21	44867252	44867253	chr21:44867253:G:T	rs73238101	G	T	G	Sox1_MA0870.1	12	1	+	5.680236510831447	-1.2285182684837728	ATCACTAACACTGTT
chr21	44929580	44929581	chr21:44929581:C:T	rs1721	C	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr21	44929599	44929600	chr21:44929600:T:C	rs62214473	T	C	T	Sox1_MA0870.1	4	1	-	3.229635494390543	-3.5479427597796436	CACAATGGCAGAGCT
chr21	44985539	44985540	chr21:44985540:C:T	rs11702235	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr21	45086063	45086064	chr21:45086064:A:C	rs870144	A	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr21	45499072	45499073	chr21:45499073:C:T	rs61633029	C	T	c	Sox1_MA0870.1	-9	0	+	0	0	.
chr21	45525844	45525845	chr21:45525845:C:T	rs374164733	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr21	45609308	45609309	chr21:45609309:G:A	rs112373318	G	A	G	Sox1_MA0870.1	2	1	-	3.4770561989472717	-3.4316985803679483	AACATTGACAGTGCC
chr21	46132294	46132295	chr21:46132295:G:A	rs35548026	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr21	46212152	46212153	chr21:46212153:C:G	rs117773065	C	G	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr21	46287667	46287668	chr21:46287668:T:C	rs13049797	T	C	C	Sox1_MA0870.1	0	1	+	4.36006314456397	5.06243990171145	TACAATTACACTGGT
chr21	46475393	46475394	chr21:46475394:G:A	rs2839275	G	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr21	46546471	46546472	chr21:46546472:C:A	rs7275616	C	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr22	10739891	10739892	chr22:10739892:A:G	rs1223206911	A	G	.	Sox1_MA0870.1	-15	0	+	0	0	.
chr22	11036978	11036979	chr22:11036979:A:G	rs1308964339	A	G	.	Sox1_MA0870.1	11	1	-	4.122112173179721	-0.8332828126306131	AAAAATGACATTGGC
chr22	12435701	12435702	chr22:12435702:T:A	rs1386210890	T	A	.	Sox1_MA0870.1	10	1	+	6.994723664840807	0.1860265807044731	TACAAAAAGATTGTT
chr22	15747880	15747881	chr22:15747881:A:G	rs375440887	A	G	a	Sox1_MA0870.1	15	0	-	0	0	.
chr22	15937055	15937056	chr22:15937056:A:T	rs1384470218	A	T	.	Sox1_MA0870.1	14	1	-	4.34388146709758	2.4428681423124323	CTCACTAACATTCTT
chr22	16398153	16398154	chr22:16398154:T:C	rs9606197	T	C	.	Sox1_MA0870.1	-18	0	-	0	0	.
chr22	16659132	16659133	chr22:16659133:G:C	rs11703273	G	C	.	Sox1_MA0870.1	13	1	-	2.954923438464121	1.4900310092780424	AACAATGGCAGGGCC
chr22	16824886	16824887	chr22:16824887:G:A	rs9606478	G	A	.	Sox1_MA0870.1	24	0	-	0	0	.
chr22	16851636	16851637	chr22:16851637:G:A	rs146550416	G	A	.	Sox1_MA0870.1	-17	0	+	0	0	.
chr22	16917921	16917922	chr22:16917922:A:G	rs13058496	A	G	.	Sox1_MA0870.1	17	0	+	0	0	.
chr22	16969874	16969875	chr22:16969875:A:G	rs61738794	A	G	A	Sox1_MA0870.1	9	1	+	4.251682709307838	-2.657072070007381	AACACCACTATTGTT
chr22	17008655	17008656	chr22:17008656:C:T	rs5746961	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr22	17153159	17153160	chr22:17153160:A:G	rs5994180	A	G	A	Sox1_MA0870.1	4	1	+	3.8595609631911576	-2.9180172909790305	AACAAAGGCATTTTT
chr22	17220977	17220978	chr22:17220978:C:T	rs57991508	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr22	17220979	17220980	chr22:17220980:C:T	rs1807520	C	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr22	17329162	17329163	chr22:17329163:G:A	rs17808489	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr22	17381185	17381186	chr22:17381186:C:T	rs11089174	C	T	T	Sox1_MA0870.1	2	1	+	8.546432688900076	1.637677909584855	TACACTGGCATTGAT
chr22	17381713	17381714	chr22:17381714:G:A	rs5747086	G	A	G	Sox1_MA0870.1	7	1	-	7.0706202190757885	7.058791166527415	CACAATACCACTGCT
chr22	17381715	17381716	chr22:17381716:A:G	rs891748699	A	G	A	Sox1_MA0870.1	5	1	-	7.0706202190757885	0.16745546042802895	CACAATACCACTGCT
chr22	17803959	17803960	chr22:17803960:T:C	rs187464145	T	C	T	Sox1_MA0870.1	4	1	-	4.33656834932627	-2.44100990484392	CTCCATATCATTGAT
chr22	17803964	17803965	chr22:17803965:C:T	rs73382727	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr22	17913562	17913563	chr22:17913563:A:C	rs4819649	A	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr22	17924973	17924974	chr22:17924974:C:T	rs75328607	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr22	17943820	17943821	chr22:17943821:C:T	chr22:17943821:C:T	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr22	18023976	18023977	chr22:18023977:T:C	rs143960823	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr22	18076322	18076323	chr22:18076323:T:C	rs41277572	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr22	19048332	19048333	chr22:19048333:T:C	rs73384864	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr22	19063364	19063365	chr22:19063365:A:G	rs9617765	A	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr22	19066970	19066971	chr22:19066971:G:A	rs117744112	G	A	C	Sox1_MA0870.1	22	0	+	0	0	.
chr22	19099254	19099255	chr22:19099255:A:G	rs73388723	A	G	A	Sox1_MA0870.1	2	1	+	3.5079253958704997	3.5079253958704997	CAAACTGGCATTGCT
chr22	19359904	19359905	chr22:19359905:T:G	rs79839027	T	G	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr22	19529531	19529532	chr22:19529532:G:A	rs141522260	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr22	19572395	19572396	chr22:19572396:A:G	rs112070208	A	G	A	Sox1_MA0870.1	1	1	+	3.912353060050573	-0.18593759534256782	GACGCTTGCAGTGTT
chr22	19620916	19620917	chr22:19620917:A:G	rs9618625	A	G	G	Sox1_MA0870.1	0	1	+	6.089956795728094	4.74783365292134	ATCACTGTCAGTGCT
chr22	19622411	19622412	chr22:19622412:C:T	rs9618630	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr22	19622419	19622420	chr22:19622420:A:G	rs9617814	A	G	G	Sox1_MA0870.1	6	1	+	8.602090820464781	7.063484127324062	CACAATAGCAGTGAA
chr22	19648592	19648593	chr22:19648593:T:C	rs528176308	T	C	T	Sox1_MA0870.1	11	1	+	4.582410757067118	-0.372984228743217	CTCAATAAGATTGAC
chr22	19705804	19705805	chr22:19705805:G:A	rs59900889	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr22	19723281	19723282	chr22:19723282:C:T	rs185431344	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr22	19740491	19740492	chr22:19740492:G:C	rs5748414	G	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr22	19819507	19819508	chr22:19819508:C:T	rs9606164	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr22	19891923	19891924	chr22:19891924:C:T	rs572864453	C	T	C	Sox1_MA0870.1	14	1	-	3.764406973670873	3.589075736603829	GACATTGGCATTGCG
chr22	19893797	19893798	chr22:19893798:G:A	rs56312415	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr22	19933613	19933614	chr22:19933614:C:T	rs9605030	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr22	20000643	20000644	chr22:20000644:G:A	rs4819852	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr22	20025438	20025439	chr22:20025439:G:A	rs117506927	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr22	20117439	20117440	chr22:20117440:A:T	rs540044660	A	T	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr22	20142014	20142015	chr22:20142015:G:A	rs175177	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr22	20243554	20243555	chr22:20243555:C:T	rs115511482	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr22	20247001	20247002	chr22:20247002:C:T	rs9606294	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr22	20571657	20571658	chr22:20571658:C:T	rs472836	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr22	20764361	20764362	chr22:20764362:G:A	rs9917585	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr22	20857291	20857292	chr22:20857292:C:T	rs41281581	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr22	20985461	20985462	chr22:20985462:T:C	rs178285	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr22	21009879	21009880	chr22:21009880:C:T	rs994709831	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr22	21552215	21552216	chr22:21552216:G:A	rs532484714	G	A	g	Sox1_MA0870.1	-11	0	-	0	0	.
chr22	21713271	21713272	chr22:21713272:C:T	rs145299550	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr22	21713272	21713273	chr22:21713273:G:A	rs115227355	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr22	21774925	21774926	chr22:21774926:A:G	rs743409	A	G	G	Sox1_MA0870.1	6	1	+	3.906462331198452	2.367855638057734	CACAATAAGATTCTA
chr22	21857590	21857591	chr22:21857591:T:C	rs11913120	T	C	T	Sox1_MA0870.1	10	1	+	5.090533346531175	-1.7181637376051586	TTCCATACCATTGTA
chr22	21908028	21908029	chr22:21908029:A:G	rs8143081	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr22	21912467	21912468	chr22:21912468:G:A	rs240055	G	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr22	22060418	22060419	chr22:22060419:G:A	rs5756711	G	A	a	Sox1_MA0870.1	12	1	+	7.364987681882614	0.4562329025673928	AACATTTCCATTGCT
chr22	22103135	22103136	chr22:22103136:T:C	rs7290065	T	C	.	Sox1_MA0870.1	30	0	-	0	0	.
chr22	22131255	22131256	chr22:22131256:A:C	chr22:22131256:A:C	A	C	.	Sox1_MA0870.1	13	1	-	4.187787895751358	0.5452401691142853	CTCAATTCAATTGTG
chr22	22182219	22182220	chr22:22182220:C:T	rs2877022	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr22	22201042	22201043	chr22:22201043:G:A	rs11912786	G	A	G	Sox1_MA0870.1	14	1	+	5.782888459880436	5.607557222813392	CACCCTGGCATTGTG
chr22	22215057	22215058	chr22:22215058:T:A	rs5750741	T	A	.	Sox1_MA0870.1	10	1	+	4.04228776393619	-2.7664093202001427	AACAGCAACATTGTT
chr22	22219783	22219784	chr22:22219784:A:G	rs147109501	A	G	.	Sox1_MA0870.1	14	1	-	9.972403806869648	8.461394402388244	AACATTTACATTGTT
chr22	22322160	22322161	chr22:22322161:A:G	rs553818817	A	G	a	Sox1_MA0870.1	-3	0	-	0	0	.
chr22	22403904	22403905	chr22:22403905:G:A	rs440822	G	A	.	Sox1_MA0870.1	7	1	-	4.593604825457512	4.581775772909139	TACACCACCATTGTA
chr22	22485077	22485078	chr22:22485078:A:G	rs398182	A	G	a	Sox1_MA0870.1	-13	0	-	0	0	.
chr22	22490314	22490315	chr22:22490315:A:C	rs5758484	A	C	c	Sox1_MA0870.1	30	0	+	0	0	.
chr22	22787970	22787971	chr22:22787971:A:G	rs75758834	A	G	.	Sox1_MA0870.1	-10	0	+	0	0	.
chr22	22788008	22788009	chr22:22788009:A:G	rs4820530	A	G	.	Sox1_MA0870.1	28	0	+	0	0	.
chr22	22848194	22848195	chr22:22848195:T:C	rs16993790	T	C	.	Sox1_MA0870.1	26	0	+	0	0	.
chr22	22902088	22902089	chr22:22902089:T:C	rs4822340	T	C	.	Sox1_MA0870.1	4	1	-	4.900000584697928	-1.8775776694722606	GACCATGACATTGAC
chr22	23041682	23041683	chr22:23041683:A:G	rs4434089	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr22	23182401	23182402	chr22:23182402:C:T	rs6003542	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr22	23187980	23187981	chr22:23187981:T:G	rs2267009	T	G	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr22	23218111	23218112	chr22:23218112:A:T	rs148998935	A	T	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr22	23353216	23353217	chr22:23353217:T:C	rs4820550	T	C	t	Sox1_MA0870.1	-12	0	+	0	0	.
chr22	23401311	23401312	chr22:23401312:A:C	rs5759770	A	C	N	Sox1_MA0870.1	-19	0	+	0	0	.
chr22	23416343	23416344	chr22:23416344:C:T	rs4991267	C	T	N	Sox1_MA0870.1	-9	0	-	0	0	.
chr22	23416344	23416345	chr22:23416345:T:A	rs4991266	T	A	N	Sox1_MA0870.1	-10	0	-	0	0	.
chr22	23473954	23473955	chr22:23473955:C:T	rs5759835	C	T	c	Sox1_MA0870.1	26	0	-	0	0	.
chr22	23473957	23473958	chr22:23473958:C:T	rs4822415	C	T	c	Sox1_MA0870.1	23	0	-	0	0	.
chr22	23525573	23525574	chr22:23525574:G:C	rs147354058	G	C	g	Sox1_MA0870.1	-2	0	-	0	0	.
chr22	23651430	23651431	chr22:23651431:G:A	rs8138605	G	A	g	Sox1_MA0870.1	23	0	-	0	0	.
chr22	23659787	23659788	chr22:23659788:A:T	rs5751704	A	T	a	Sox1_MA0870.1	7	1	-	7.3379397858379685	7.779529665922383	GACACTTTGATTGTA
chr22	23791180	23791181	chr22:23791181:C:G	rs2073388	C	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr22	23835763	23835764	chr22:23835764:C:T	rs151200188	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr22	23866058	23866059	chr22:23866059:T:C	rs6003933	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr22	24108002	24108003	chr22:24108003:C:A	rs142974005	C	A	C	Sox1_MA0870.1	2	1	+	2.4414837554871283	-4.467271023828091	CTCACGAGCATTGTC
chr22	24108023	24108024	chr22:24108024:C:T	rs176157	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr22	24445566	24445567	chr22:24445567:T:C	rs562548070	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr22	24474095	24474096	chr22:24474096:T:A	rs4822493	T	A	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr22	24631676	24631677	chr22:24631677:G:A	rs73879098	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr22	24731897	24731898	chr22:24731898:T:C	rs5751960	T	C	T	Sox1_MA0870.1	6	1	+	3.7541597650825875	-0.6619905220363148	AACACTTTCATTTCC
chr22	24772757	24772758	chr22:24772758:A:G	rs946677679	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr22	24805778	24805779	chr22:24805779:C:T	rs6004287	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr22	24953875	24953876	chr22:24953876:A:G	rs61367363	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr22	24966009	24966010	chr22:24966010:T:C	rs5996800	T	C	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr22	25083511	25083512	chr22:25083512:T:C	rs5760834	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr22	25085247	25085248	chr22:25085248:A:G	rs6004430	A	G	A	Sox1_MA0870.1	9	1	+	5.519574889903245	-1.389179889411976	TTCAAAGCCATTGTT
chr22	25197690	25197691	chr22:25197691:A:G	rs763281	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr22	25409256	25409257	chr22:25409257:T:C	rs13057190	T	C	t	Sox1_MA0870.1	-20	0	+	0	0	.
chr22	25493189	25493190	chr22:25493190:T:C	rs11090398	T	C	T	Sox1_MA0870.1	3	1	-	3.532180956767321	-3.3684087104299048	AACACAGCCATTGAA
chr22	25493208	25493209	chr22:25493209:C:G	rs560918724	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr22	25511937	25511938	chr22:25511938:C:A	rs507715	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr22	25514876	25514877	chr22:25514877:G:C	rs686025	G	C	C	Sox1_MA0870.1	8	1	-	4.985745461461541	1.2152424685612027	ATCACATACATTGTC
chr22	25536574	25536575	chr22:25536575:G:C	rs496796	G	C	G	Sox1_MA0870.1	2	1	-	3.207022651128402	-3.70173212818682	GACAATCACAGTGGA
chr22	25560041	25560042	chr22:25560042:T:C	rs66902261	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr22	25623360	25623361	chr22:25623361:G:T	rs16980512	G	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr22	25623361	25623362	chr22:25623362:T:C	rs186111803	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr22	25661298	25661299	chr22:25661299:T:C	rs77015463	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr22	25661330	25661331	chr22:25661331:G:A	rs115031980	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr22	25879193	25879194	chr22:25879194:A:G	rs5761294	A	G	A	Sox1_MA0870.1	4	1	+	2.527258737243064	-4.2503195169271235	TACAATGGCAGGGCT
chr22	25970019	25970020	chr22:25970020:A:G	rs114921896	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr22	26028437	26028438	chr22:26028438:G:A	rs16981230	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr22	26050234	26050235	chr22:26050235:G:A	rs76423288	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr22	26171325	26171326	chr22:26171326:C:A	rs186168694	C	A	C	Sox1_MA0870.1	20	0	-	0	0	.
chr22	26196941	26196942	chr22:26196942:G:C	rs1474602	G	C	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr22	26394737	26394738	chr22:26394738:G:T	rs2331250	G	T	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr22	26564722	26564723	chr22:26564723:T:C	rs2267092	T	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr22	26642888	26642889	chr22:26642889:A:G	rs5761655	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr22	26642900	26642901	chr22:26642901:G:T	rs5752371	G	T	G	Sox1_MA0870.1	10	1	+	5.378148337687623	7.619273266251184	GACAAAAGCAGTGAT
chr22	26645345	26645346	chr22:26645346:C:T	rs190325753	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr22	26645378	26645379	chr22:26645379:C:T	rs866111829	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr22	26650697	26650698	chr22:26650698:A:T	rs4822760	A	T	A	Sox1_MA0870.1	32	0	+	0	0	.
chr22	26768998	26768999	chr22:26768999:C:T	rs3091366	C	T	T	Sox1_MA0870.1	17	0	-	0	0	.
chr22	26926253	26926254	chr22:26926254:G:C	rs5761836	G	C	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr22	26942987	26942988	chr22:26942988:T:A	rs4822825	T	A	T	Sox1_MA0870.1	11	1	+	5.323040193790691	-1.5796924930661422	GAAAATAGCAGTGTC
chr22	27038009	27038010	chr22:27038010:C:G	rs5752468	C	G	C	Sox1_MA0870.1	33	0	-	0	0	.
chr22	27043580	27043581	chr22:27043581:G:A	rs7285361	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr22	27070666	27070667	chr22:27070667:A:C	rs16986745	A	C	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr22	27110844	27110845	chr22:27110845:G:A	rs78123870	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr22	27146983	27146984	chr22:27146984:C:G	rs9608582	C	G	c	Sox1_MA0870.1	21	0	+	0	0	.
chr22	27248987	27248988	chr22:27248988:A:G	rs552212	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr22	27286635	27286636	chr22:27286636:A:G	rs13054977	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr22	27286665	27286666	chr22:27286666:G:A	rs7293113	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr22	27348037	27348038	chr22:27348038:T:C	rs13057697	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr22	27406469	27406470	chr22:27406470:A:G	rs16984531	A	G	A	Sox1_MA0870.1	11	1	-	4.46350340619107	-0.4918915796192632	CTCATTGCCATTGTT
chr22	27510724	27510725	chr22:27510725:T:C	rs17465632	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr22	27510760	27510761	chr22:27510761:A:G	rs17465661	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr22	27617163	27617164	chr22:27617164:T:C	rs9608631	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr22	27620024	27620025	chr22:27620025:G:T	rs12159992	G	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr22	27671524	27671525	chr22:27671525:G:A	rs78260427	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr22	27727697	27727698	chr22:27727698:G:A	rs5997299	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr22	27758629	27758630	chr22:27758630:G:T	rs2267110	G	T	T	Sox1_MA0870.1	12	1	+	4.125460506185627	-2.783294273129593	GTCCCTGGCATTGTT
chr22	27850153	27850154	chr22:27850154:T:G	chr22:27850154:T:G	T	G	T	Sox1_MA0870.1	1	1	-	4.959951063369022	1.1908106785245223	AACCCTGCCAGTGTC
chr22	28076316	28076317	chr22:28076317:A:G	rs9625395	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr22	28183648	28183649	chr22:28183649:C:T	rs73882705	C	T	C	Sox1_MA0870.1	13	1	+	2.7169072851739946	4.894562582624989	AGCATTATCATTGCC
chr22	28422041	28422042	chr22:28422042:A:G	rs16986400	A	G	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr22	28435678	28435679	chr22:28435679:T:C	rs192952352	T	C	t	Sox1_MA0870.1	22	0	+	0	0	.
chr22	28707352	28707353	chr22:28707353:T:C	rs111507708	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr22	28810220	28810221	chr22:28810221:T:C	rs5762816	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr22	29095639	29095640	chr22:29095640:G:A	rs16987052	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr22	29117298	29117299	chr22:29117299:A:G	rs1978046	A	G	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr22	29160750	29160751	chr22:29160751:G:A	rs132304	G	A	a	Sox1_MA0870.1	30	0	+	0	0	.
chr22	29282287	29282288	chr22:29282288:T:C	rs8143120	T	C	T	Sox1_MA0870.1	15	0	+	0	0	.
chr22	29448052	29448053	chr22:29448053:A:G	rs1484668249	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr22	29585132	29585133	chr22:29585133:G:A	rs61056759	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr22	29585144	29585145	chr22:29585145:T:C	rs9613970	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr22	30227804	30227805	chr22:30227805:C:T	chr22:30227805:C:T	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr22	30227818	30227819	chr22:30227819:T:C	rs113188978	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr22	30445981	30445982	chr22:30445982:C:G	rs1180161782	C	G	C	Sox1_MA0870.1	15	0	+	0	0	.
chr22	30458675	30458676	chr22:30458676:G:A	rs4820851	G	A	g	Sox1_MA0870.1	34	0	-	0	0	.
chr22	30468804	30468805	chr22:30468805:C:T	rs2269962	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr22	30468829	30468830	chr22:30468830:A:G	rs2269963	A	G	A	Sox1_MA0870.1	5	1	-	7.664222817533139	0.7610580588853795	GACAATAGCACTGTC
chr22	30592074	30592075	chr22:30592075:T:C	chr22:30592075:T:C	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr22	30712629	30712630	chr22:30712630:G:T	rs9609057	G	T	G	Sox1_MA0870.1	27	0	+	0	0	.
chr22	30777965	30777966	chr22:30777966:A:T	rs75321327	A	T	A	Sox1_MA0870.1	11	1	-	4.063683342806601	-2.8390493440502307	CACTATAACATTTTT
chr22	30824724	30824725	chr22:30824725:G:T	rs76915174	G	T	G	Sox1_MA0870.1	17	0	-	0	0	.
chr22	30924683	30924684	chr22:30924684:C:T	rs775047848	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr22	31231198	31231199	chr22:31231199:A:C	chr22:31231199:A:C	A	C	A	Sox1_MA0870.1	27	0	-	0	0	.
chr22	31333570	31333571	chr22:31333571:A:C	rs34128648	A	C	A	Sox1_MA0870.1	6	1	-	7.203124025364547	6.637566047938131	AACAATTGCAGTTTT
chr22	31345005	31345006	chr22:31345006:G:C	rs745816246	G	C	G	Sox1_MA0870.1	2	1	-	3.0450954126810377	-3.863659366634182	AGCAATGGCATCGCC
chr22	31495940	31495941	chr22:31495941:C:G	rs11914234	C	G	C	Sox1_MA0870.1	13	1	+	4.514617544528711	3.0497251153426332	AACAAAAAGAGTGCT
chr22	31633364	31633365	chr22:31633365:C:G	rs111697884	C	G	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr22	31633379	31633380	chr22:31633380:C:A	rs113992242	C	A	C	Sox1_MA0870.1	13	1	+	5.945163033193742	4.777292304055576	TCCACTGGCATTGCT
chr22	31724041	31724042	chr22:31724042:T:C	rs131235	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr22	31927524	31927525	chr22:31927525:T:G	rs5994451	T	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr22	31947520	31947521	chr22:31947521:A:G	rs188311886	A	G	A	Sox1_MA0870.1	10	1	-	4.949691392370443	-1.8590056917658901	GGCAAGACCATTGTT
chr22	32020240	32020241	chr22:32020241:G:A	rs74924328	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr22	32311420	32311421	chr22:32311421:G:A	rs5753957	G	A	g	Sox1_MA0870.1	-5	0	+	0	0	.
chr22	32311424	32311425	chr22:32311425:C:T	rs4355205	C	T	c	Sox1_MA0870.1	-1	0	+	0	0	.
chr22	32327262	32327263	chr22:32327263:C:T	rs9609508	C	T	-	Sox1_MA0870.1	17	0	-	0	0	.
chr22	32466460	32466461	chr22:32466461:G:T	rs146955293	G	T	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr22	32534482	32534483	chr22:32534483:G:A	rs762908	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr22	32540544	32540545	chr22:32540545:A:G	rs4821072	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr22	32569062	32569063	chr22:32569063:G:A	rs1016742	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr22	32603781	32603782	chr22:32603782:C:T	rs16990827	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr22	32650549	32650550	chr22:32650550:C:G	rs4373007	C	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr22	32744812	32744813	chr22:32744813:C:T	rs5998611	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr22	32830663	32830664	chr22:32830664:C:T	rs73158332	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr22	32885067	32885068	chr22:32885068:T:C	rs35346738	T	C	T	Sox1_MA0870.1	10	1	+	6.164754351839687	-0.6439427322966481	AACACTTACATAGTG
chr22	32977340	32977341	chr22:32977341:G:A	rs73162032	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr22	33035178	33035179	chr22:33035179:G:A	rs8138938	G	A	A	Sox1_MA0870.1	8	1	-	7.226578395338395	3.044968848701113	ATCATTATCATTGTT
chr22	33405156	33405157	chr22:33405157:T:C	rs2267198	T	C	T	Sox1_MA0870.1	10	1	+	3.263916597027058	-3.5447804871092754	TACAAGGACATTGCA
chr22	33472857	33472858	chr22:33472858:A:G	rs5994754	A	G	A	Sox1_MA0870.1	6	1	+	2.3605535839283878	0.8219468907876699	ACCAGTAGCAGTGCT
chr22	33540034	33540035	chr22:33540035:C:T	rs738750	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr22	33553200	33553201	chr22:33553201:T:C	rs2283916	T	C	T	Sox1_MA0870.1	4	1	-	3.6358424509909937	-3.141735803179194	CACAATAAGATGGCT
chr22	33563756	33563757	chr22:33563757:G:A	rs62227071	G	A	G	Sox1_MA0870.1	2	1	-	2.758862184115271	-4.149892595199951	GACACTAACAATGAC
chr22	33626299	33626300	chr22:33626300:G:A	rs86487	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr22	33674686	33674687	chr22:33674687:A:G	rs4821171	A	G	G	Sox1_MA0870.1	1	1	+	5.068412936567624	0.970122281174484	CACACTCCCATTGGT
chr22	33780835	33780836	chr22:33780836:C:A	chr22:33780836:C:A	C	A	T	Sox1_MA0870.1	28	0	-	0	0	.
chr22	33780835	33780836	chr22:33780836:C:T	rs74608905	C	T	T	Sox1_MA0870.1	28	0	-	0	0	.
chr22	33780836	33780837	chr22:33780837:C:T	rs187844423	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr22	33792958	33792959	chr22:33792959:T:C	rs57936677	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr22	33849149	33849150	chr22:33849150:A:T	rs2283952	A	T	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr22	33923747	33923748	chr22:33923748:G:A	rs73154574	G	A	A	Sox1_MA0870.1	23	0	-	0	0	.
chr22	33923758	33923759	chr22:33923759:C:T	rs573877069	C	T	C	Sox1_MA0870.1	12	1	-	4.908794875454792	-1.9999599038604283	TACAATAACTGTGTG
chr22	33923768	33923769	chr22:33923769:G:T	rs111864395	G	T	G	Sox1_MA0870.1	2	1	-	4.908794875454792	-1.9999599038604283	TACAATAACTGTGTG
chr22	34406633	34406634	chr22:34406634:A:G	rs5749843	A	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr22	34761585	34761586	chr22:34761586:T:C	rs743790	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr22	34881046	34881047	chr22:34881047:A:G	rs5755393	A	G	G	Sox1_MA0870.1	13	1	-	7.410706681081418	5.233051383630425	CAAAATATCATTGTG
chr22	35104060	35104061	chr22:35104061:C:T	rs62241691	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr22	35123856	35123857	chr22:35123857:C:T	rs2157592	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr22	35397924	35397925	chr22:35397925:A:G	rs116786363	A	G	A	Sox1_MA0870.1	5	1	-	5.105328729768736	-1.7978360288790238	AACACTAACAGTTTC
chr22	35453399	35453400	chr22:35453400:A:T	rs73154016	A	T	A	Sox1_MA0870.1	13	1	-	3.283294281226507	-0.06223174536265175	CACTCTGTCAGTGTC
chr22	35478871	35478872	chr22:35478872:G:T	rs997231525	G	T	G	Sox1_MA0870.1	8	1	+	3.566350727420039	3.1552441736830934	CACAATAAGCGTGTT
chr22	35549655	35549656	chr22:35549656:T:G	rs6518957	T	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr22	35549683	35549684	chr22:35549684:G:A	rs78899921	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr22	35697452	35697453	chr22:35697453:C:G	rs5995144	C	G	C	Sox1_MA0870.1	29	0	+	0	0	.
chr22	35910335	35910336	chr22:35910336:C:T	rs145516367	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr22	36227958	36227959	chr22:36227959:C:T	rs200488207	C	T	C	Sox1_MA0870.1	3	1	+	3.147623613149739	2.7190932321105796	ACCCATGCCAGTGTC
chr22	36278191	36278192	chr22:36278192:G:A	rs112504133	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr22	36469596	36469597	chr22:36469597:T:C	rs12159295	T	C	C	Sox1_MA0870.1	11	1	+	3.9598986056033905	-0.9954963802069442	CAGACTGGCATTGTG
chr22	36511109	36511110	chr22:36511110:C:G	rs148926389	C	G	C	Sox1_MA0870.1	12	1	+	3.55131613439426	10.46007091370948	AACACTTCCATTCCG
chr22	36682912	36682913	chr22:36682913:A:T	rs5756289	A	T	a	Sox1_MA0870.1	-12	0	-	0	0	.
chr22	36734566	36734567	chr22:36734567:A:G	rs147897770	A	G	A	Sox1_MA0870.1	0	1	+	3.973330343083824	2.63120720027707	AAGACTGACATTGAT
chr22	36880242	36880243	chr22:36880243:C:A	rs5750326	C	A	C	Sox1_MA0870.1	31	0	-	0	0	.
chr22	37108116	37108117	chr22:37108117:A:C	rs228913	A	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr22	37167939	37167940	chr22:37167940:C:T	rs5756532	C	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr22	37197458	37197459	chr22:37197459:G:A	rs78728597	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr22	37218664	37218665	chr22:37218665:C:T	rs56141786	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr22	37218697	37218698	chr22:37218698:C:A	rs6000613	C	A	C	Sox1_MA0870.1	29	0	+	0	0	.
chr22	37346230	37346231	chr22:37346231:G:A	rs933242	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr22	37627717	37627718	chr22:37627718:C:A	rs112284215	C	A	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr22	37863752	37863753	chr22:37863753:A:G	chr22:37863753:A:G	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr22	37887890	37887891	chr22:37887891:G:C	rs55776434	G	C	G	Sox1_MA0870.1	32	0	-	0	0	.
chr22	38135527	38135528	chr22:38135528:G:A	rs867435302	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr22	38166048	38166049	chr22:38166049:T:C	rs132972	T	C	C	Sox1_MA0870.1	9	1	-	3.2720687830306527	-3.636685996284568	ACCACAGTCATTGTG
chr22	38166066	38166067	chr22:38166067:G:T	chr22:38166067:G:T	G	T	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr22	38171384	38171385	chr22:38171385:A:T	rs35526737	A	T	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr22	38196959	38196960	chr22:38196960:G:A	rs2413505	G	A	G	Sox1_MA0870.1	12	1	+	5.628068539515865	-1.2806862397993561	TCCAATGCCAGTGCT
chr22	38202763	38202764	chr22:38202764:G:A	chr22:38202764:G:A	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr22	38300220	38300221	chr22:38300221:C:T	rs78340378	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr22	38423343	38423344	chr22:38423344:C:T	rs2413533	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr22	38481576	38481577	chr22:38481577:G:A	rs116975602	G	A	G	Sox1_MA0870.1	8	1	-	8.624427413303776	4.442817866666493	AACACAAGCATTGTG
chr22	38718679	38718680	chr22:38718680:C:T	rs1024607728	C	T	C	Sox1_MA0870.1	10	1	-	3.9903650450228163	-0.5772071105499562	ATCCATTCCAGTGTG
chr22	38781319	38781320	chr22:38781320:C:T	rs112957960	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr22	38824554	38824555	chr22:38824555:C:T	rs77400816	C	T	C	Sox1_MA0870.1	13	1	+	7.820503662459647	9.99815895991064	CACCATTCCATTGCT
chr22	38976125	38976126	chr22:38976126:C:T	rs1074672	C	T	N	Sox1_MA0870.1	25	0	+	0	0	.
chr22	38976128	38976129	chr22:38976129:C:T	rs143120522	C	T	c	Sox1_MA0870.1	28	0	+	0	0	.
chr22	39266697	39266698	chr22:39266698:C:T	rs11089938	C	T	C	Sox1_MA0870.1	9	1	-	3.595107863184314	10.503862642499534	AACAGTATCGTTGTT
chr22	39373812	39373813	chr22:39373813:T:C	rs1569499	T	C	c	Sox1_MA0870.1	-18	0	-	0	0	.
chr22	39434117	39434118	chr22:39434118:A:G	rs5750824	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr22	39492795	39492796	chr22:39492796:C:T	rs59101477	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr22	39531613	39531614	chr22:39531614:C:T	rs17001283	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr22	39601624	39601625	chr22:39601625:C:T	rs713865	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr22	40179278	40179279	chr22:40179279:C:G	rs184710715	C	G	C	Sox1_MA0870.1	31	0	+	0	0	.
chr22	40208940	40208941	chr22:40208941:T:G	rs4820408	T	G	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr22	40213644	40213645	chr22:40213645:A:G	rs74893831	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr22	40361223	40361224	chr22:40361224:A:C	rs8135371	A	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr22	41066725	41066726	chr22:41066726:C:T	rs5995990	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr22	41074308	41074309	chr22:41074309:A:G	rs5758212	A	G	A	Sox1_MA0870.1	1	1	-	4.92333659340983	4.43148045572647	ATCAAGATCATTGCT
chr22	41201446	41201447	chr22:41201447:A:G	rs192117100	A	G	A	Sox1_MA0870.1	0	1	+	6.978645506302286	5.636522363495532	AACAGTAACAGTGTG
chr22	41778271	41778272	chr22:41778272:C:T	rs113639478	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr22	41816544	41816545	chr22:41816545:G:A	rs5758482	G	A	G	Sox1_MA0870.1	7	1	+	5.170848453587148	5.567826781383655	GACCCTAGGATTGTT
chr22	41966555	41966556	chr22:41966556:A:G	rs4822075	A	G	A	Sox1_MA0870.1	10	1	-	9.312160499634478	2.5034634154981443	CACAAAACCATTGTG
chr22	42022105	42022106	chr22:42022106:T:A	rs9607869	T	A	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr22	42152888	42152889	chr22:42152889:A:G	rs2743467	A	G	G	Sox1_MA0870.1	10	1	-	5.226038099678904	-1.5826589844574297	ACCACTTCCATTGGG
chr22	42340390	42340391	chr22:42340391:C:A	rs73886046	C	A	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr22	42459092	42459093	chr22:42459093:G:A	rs5751276	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr22	42507677	42507678	chr22:42507678:T:C	rs2413697	T	C	t	Sox1_MA0870.1	9	1	-	4.787727845785026	-2.1210269335301946	AACAATTACAATGGC
chr22	42623245	42623246	chr22:42623246:A:G	rs137126	A	G	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr22	42758292	42758293	chr22:42758293:A:G	rs9623692	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr22	42780166	42780167	chr22:42780167:T:C	rs925577509	T	C	T	Sox1_MA0870.1	10	1	+	7.550343632325127	0.7416465481887933	AACAAAAACATTGGC
chr22	42830592	42830593	chr22:42830593:C:A	rs5758965	C	A	C	Sox1_MA0870.1	12	1	+	5.1931068693931355	5.1931068693931355	TACACTAACATTCTG
chr22	42933756	42933757	chr22:42933757:C:T	rs17003423	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr22	43002955	43002956	chr22:43002956:C:T	rs738378	C	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr22	43005072	43005073	chr22:43005073:G:A	rs5759082	G	A	G	Sox1_MA0870.1	14	1	-	5.590729644560529	7.101739049041934	CACAGTACCATTGCC
chr22	43339809	43339810	chr22:43339810:T:G	rs191220075	T	G	-	Sox1_MA0870.1	30	0	+	0	0	.
chr22	43400924	43400925	chr22:43400925:T:C	rs113748591	T	C	t	Sox1_MA0870.1	18	0	+	0	0	.
chr22	43441295	43441296	chr22:43441296:A:G	rs135059	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr22	43460745	43460746	chr22:43460746:T:C	rs34401744	T	C	T	Sox1_MA0870.1	15	0	+	0	0	.
chr22	43745387	43745388	chr22:43745388:G:A	rs184343603	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr22	43745392	43745393	chr22:43745393:C:T	rs10483220	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr22	43797745	43797746	chr22:43797746:A:C	rs9614187	A	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr22	43890435	43890436	chr22:43890436:T:C	rs713831	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr22	43915820	43915821	chr22:43915821:G:A	rs9917616	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr22	43918544	43918545	chr22:43918545:A:G	rs5764027	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr22	43939525	43939526	chr22:43939526:C:A	rs35621602	C	A	C	Sox1_MA0870.1	25	0	+	0	0	.
chr22	44004817	44004818	chr22:44004818:G:A	rs6006611	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr22	44011521	44011522	chr22:44011522:C:A	rs55736117	C	A	A	Sox1_MA0870.1	8	1	+	3.4784388951213367	-2.414730759196878	GGCAAGAACATTGTA
chr22	44113155	44113156	chr22:44113156:C:G	rs141460626	C	G	-	Sox1_MA0870.1	0	1	+	3.716976445004134	3.6111506507523616	CACAGATACATTGTT
chr22	44126952	44126953	chr22:44126953:C:T	rs133909	C	T	T	Sox1_MA0870.1	25	0	+	0	0	.
chr22	44221762	44221763	chr22:44221763:T:C	rs139236	T	C	T	Sox1_MA0870.1	11	1	+	3.393469110103765	-1.561925875706569	ATCAACAGCAGTGTC
chr22	44357627	44357628	chr22:44357628:C:T	rs713695	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr22	44403368	44403369	chr22:44403369:A:T	rs713828	A	T	A	Sox1_MA0870.1	5	1	-	4.701554321059403	-0.3175756922511318	GGCACTGGCATTGCC
chr22	44438447	44438448	chr22:44438448:A:G	rs117981286	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr22	44537196	44537197	chr22:44537197:T:A	rs6007188	T	A	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr22	44541826	44541827	chr22:44541827:A:C	rs58583718	A	C	A	Sox1_MA0870.1	27	0	+	0	0	.
chr22	44541830	44541831	chr22:44541831:G:A	rs9626483	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr22	44552027	44552028	chr22:44552028:A:G	rs2349628	A	G	G	Sox1_MA0870.1	11	1	-	5.486567520082145	0.5311725342718105	GACAATAGCAATGCC
chr22	44620351	44620352	chr22:44620352:T:G	chr22:44620352:T:G	T	G	T	Sox1_MA0870.1	29	0	-	0	0	.
chr22	44622566	44622567	chr22:44622567:A:C	rs11705508	A	C	A	Sox1_MA0870.1	25	0	+	0	0	.
chr22	44674292	44674293	chr22:44674293:T:G	rs114982235	T	G	T	Sox1_MA0870.1	30	0	+	0	0	.
chr22	44721916	44721917	chr22:44721917:G:C	rs763218	G	C	c	Sox1_MA0870.1	8	1	-	3.653664763526234	-0.11683822937410338	GCCACTTTCAGTGAT
chr22	44796740	44796741	chr22:44796741:A:G	rs9626245	A	G	a	Sox1_MA0870.1	-10	0	+	0	0	.
chr22	44796779	44796780	chr22:44796780:G:A	rs1001728	G	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr22	44832505	44832506	chr22:44832506:A:G	rs10433321	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr22	45010968	45010969	chr22:45010969:A:G	rs116860341	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr22	45100574	45100575	chr22:45100575:T:C	rs6006931	T	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr22	45201749	45201750	chr22:45201750:C:T	rs5766533	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr22	45469749	45469750	chr22:45469750:T:A	rs2072771	T	A	T	Sox1_MA0870.1	30	0	+	0	0	.
chr22	45474233	45474234	chr22:45474234:G:A	rs557255298	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr22	45598286	45598287	chr22:45598287:T:A	rs3788672	T	A	A	Sox1_MA0870.1	13	1	+	6.402639827219685	3.057113800630527	TCCACTTTCAGTGTT
chr22	45603118	45603119	chr22:45603119:G:A	rs181362131	G	A	G	Sox1_MA0870.1	6	1	+	2.7120385411925296	4.250645234333248	GTCACTGCCATCGTC
chr22	45610909	45610910	chr22:45610910:T:A	rs5765533	T	A	A	Sox1_MA0870.1	4	1	-	3.496090663576777	-3.281487590593411	AACAATTGGGTTGCT
chr22	45639373	45639374	chr22:45639374:C:A	rs117267516	C	A	C	Sox1_MA0870.1	19	0	-	0	0	.
chr22	45748651	45748652	chr22:45748652:G:A	rs186126551	G	A	-	Sox1_MA0870.1	16	0	+	0	0	.
chr22	45775415	45775416	chr22:45775416:C:T	rs73444654	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr22	45993929	45993930	chr22:45993930:G:A	rs28394489	G	A	a	Sox1_MA0870.1	14	1	-	3.6331695517542015	5.144178956235606	ATCACCATCATTGTC
chr22	45993963	45993964	chr22:45993964:A:G	rs866546368	A	G	a	Sox1_MA0870.1	-20	0	-	0	0	.
chr22	46035393	46035394	chr22:46035394:C:A	rs76725535	C	A	A	Sox1_MA0870.1	16	0	-	0	0	.
chr22	46214169	46214170	chr22:46214170:G:A	rs4253728	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr22	46230534	46230535	chr22:46230535:C:T	rs11090818	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr22	46560588	46560589	chr22:46560589:A:G	rs5768956	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr22	46674444	46674445	chr22:46674445:A:C	chr22:46674445:A:C	A	C	A	Sox1_MA0870.1	1	1	+	2.782295765918027	-0.9868446189264718	AACCCTGCCAGTGCC
chr22	46674468	46674469	chr22:46674469:G:A	rs546940436	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr22	46739150	46739151	chr22:46739151:G:A	rs116714513	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr22	46744592	46744593	chr22:46744593:C:A	rs17761944	C	A	C	Sox1_MA0870.1	34	0	+	0	0	.
chr22	46750477	46750478	chr22:46750478:C:T	rs4823572	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr22	46919627	46919628	chr22:46919628:G:A	rs549484641	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr22	46919647	46919648	chr22:46919648:T:C	rs6008001	T	C	C	Sox1_MA0870.1	5	1	+	5.4033419085501	-1.4998228500976598	GCCCATAGCATTGTG
chr22	46930228	46930229	chr22:46930229:T:C	rs5769266	T	C	t	Sox1_MA0870.1	14	1	-	4.362861297714356	4.5381925347814	ACCAAAACCAGTGTA
chr22	46932687	46932688	chr22:46932688:A:G	rs9616163	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr22	46958106	46958107	chr22:46958107:G:C	rs6009070	G	C	C	Sox1_MA0870.1	12	1	+	3.632988222912946	-3.2757665564022744	AGCAGTTACAGTGTT
chr22	46998241	46998242	chr22:46998242:C:T	rs9627641	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr22	47030575	47030576	chr22:47030576:C:T	rs138586583	C	T	C	Sox1_MA0870.1	8	1	+	7.125611295506518	2.944001748869235	AACAATAACGTTGCC
chr22	47062127	47062128	chr22:47062128:T:C	rs73170411	T	C	T	Sox1_MA0870.1	11	1	+	3.073176055392475	-1.8822189304178578	GACAATGTCAGTCCT
chr22	47101311	47101312	chr22:47101312:G:A	rs2180149	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr22	47133513	47133514	chr22:47133514:G:A	rs738665	G	A	A	Sox1_MA0870.1	5	1	-	2.279753834258995	9.182918592906754	CACAACGGCATTGGG
chr22	47189623	47189624	chr22:47189624:G:A	rs112545119	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr22	47236923	47236924	chr22:47236924:A:T	rs4823621	A	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr22	47355206	47355207	chr22:47355207:T:C	rs4823633	T	C	C	Sox1_MA0870.1	13	1	+	3.85907651369358	1.681421216242586	CACAATCCCACTGTT
chr22	47370432	47370433	chr22:47370433:G:A	rs8136815	G	A	g	Sox1_MA0870.1	33	0	+	0	0	.
chr22	47409419	47409420	chr22:47409420:C:A	rs4823481	C	A	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr22	47434436	47434437	chr22:47434437:C:T	rs141844844	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr22	47474960	47474961	chr22:47474961:C:T	rs739010	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr22	47567462	47567463	chr22:47567463:A:G	rs1108364	A	G	G	Sox1_MA0870.1	11	1	-	3.57709164065107	-1.3783033451592643	GACAAAAACAGTGGA
chr22	47594625	47594626	chr22:47594626:T:G	rs5767822	T	G	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr22	47597659	47597660	chr22:47597660:G:A	rs1858755	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr22	48272221	48272222	chr22:48272222:A:G	rs133590	A	G	G	Sox1_MA0870.1	10	1	-	9.892555870692567	3.083858786556233	TCCAATAGCATTGTG
chr22	48380059	48380060	chr22:48380060:A:G	rs130767	A	G	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr22	48406771	48406772	chr22:48406772:A:T	rs130807	A	T	-	Sox1_MA0870.1	16	0	+	0	0	.
chr22	48434546	48434547	chr22:48434547:G:A	rs5768613	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr22	48502068	48502069	chr22:48502069:G:A	rs6008741	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr22	48622420	48622421	chr22:48622421:A:T	rs738688	A	T	T	Sox1_MA0870.1	3	1	+	5.444712912892623	-0.06958239318471426	GACACTTGCAGTGGG
chr22	48670947	48670948	chr22:48670948:G:A	rs12484312	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr22	48682688	48682689	chr22:48682689:G:C	rs2337489	G	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr22	48695417	48695418	chr22:48695418:T:C	rs910572	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr22	48710048	48710049	chr22:48710049:C:T	rs13056278	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr22	48732210	48732211	chr22:48732211:G:T	rs6010502	G	T	G	Sox1_MA0870.1	33	0	-	0	0	.
chr22	48738904	48738905	chr22:48738905:C:A	rs6010516	C	A	A	Sox1_MA0870.1	1	1	+	4.817426582051912	8.58656696689641	CCCAAATGCATTGTC
chr22	48797584	48797585	chr22:48797585:A:G	rs73179505	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr22	48797606	48797607	chr22:48797607:C:G	rs7288164	C	G	C	Sox1_MA0870.1	7	1	+	4.815379450257382	4.848161949996914	TACACTTCCAGTGGG
chr22	48827628	48827629	chr22:48827629:C:T	rs8184975	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr22	48852406	48852407	chr22:48852407:A:G	rs28714339	A	G	G	Sox1_MA0870.1	3	1	+	3.9049037236670077	-2.995685943530217	CACACTGACCTTGCT
chr22	48951107	48951108	chr22:48951108:G:A	rs5770432	G	A	G	Sox1_MA0870.1	14	1	-	6.796339861742476	8.30734926622388	AACATTAGCAGTGTC
chr22	49027895	49027896	chr22:49027896:G:A	rs9627810	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr22	49039129	49039130	chr22:49039130:T:C	rs2038304	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr22	49039140	49039141	chr22:49039141:A:G	rs9616224	A	G	A	Sox1_MA0870.1	10	1	-	3.9404650999730726	-2.8682319841632604	GACACCTCCATTGCT
chr22	49098606	49098607	chr22:49098607:T:C	rs935754413	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr22	49197498	49197499	chr22:49197499:T:G	rs1880003	T	G	T	Sox1_MA0870.1	3	1	-	3.156425233311626	-1.9293396917265482	CACACAGGCAGTGCT
chr22	49197516	49197517	chr22:49197517:C:T	rs4824008	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr22	49290511	49290512	chr22:49290512:A:G	rs7286313	A	G	A	Sox1_MA0870.1	9	1	+	2.725768755914794	-4.182986023400427	AACAGTGACATCGTG
chr22	49357189	49357190	chr22:49357190:G:A	rs9306530	G	A	g	Sox1_MA0870.1	2	1	-	6.005678920300596	-0.9030758590146256	CACGATTCCATTGCT
chr22	49765423	49765424	chr22:49765424:A:G	rs138809	A	G	a	Sox1_MA0870.1	4	1	+	5.13866010276613	-1.638918151404058	ATCCATGTCAGTGTT
chr22	49884186	49884187	chr22:49884187:T:C	rs910796	T	C	C	Sox1_MA0870.1	3	1	-	4.141788789100557	-2.7588008780966686	CACACTGCCATTTTC
chr22	49897954	49897955	chr22:49897955:G:A	rs73443931	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr22	50033577	50033578	chr22:50033578:T:C	rs148369674	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr22	50174510	50174511	chr22:50174511:G:A	rs866588572	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr22	50176166	50176167	chr22:50176167:G:A	rs78889708	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr22	50216257	50216258	chr22:50216258:C:G	rs777066989	C	G	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr22	50246278	50246279	chr22:50246279:G:A	rs2294404	G	A	g	Sox1_MA0870.1	31	0	-	0	0	.
chr22	50246317	50246318	chr22:50246318:C:T	rs76578729	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr22	50622770	50622771	chr22:50622771:G:T	rs11704557	G	T	G	Sox1_MA0870.1	28	0	+	0	0	.
chr22	50653848	50653849	chr22:50653849:A:G	rs190135248	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr3	441047	441048	chr3:441048:A:T	rs116534901	A	T	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	521132	521133	chr3:521133:T:C	rs75888098	T	C	T	Sox1_MA0870.1	10	1	+	5.318090916820475	-1.4906061673158586	AACAATAAGTTTGTG
chr3	700627	700628	chr3:700628:G:C	rs2729178	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	965595	965596	chr3:965596:C:T	rs553979435	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr3	1020702	1020703	chr3:1020703:T:C	rs4589918	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr3	1183750	1183751	chr3:1183751:A:G	rs77811193	A	G	-	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	1270057	1270058	chr3:1270058:A:G	rs7621594	A	G	G	Sox1_MA0870.1	7	1	+	14.655225546229282	14.258247218432773	GACAATAACATTGTG
chr3	1527909	1527910	chr3:1527910:C:G	rs73001631	C	G	C	Sox1_MA0870.1	31	0	+	0	0	.
chr3	1849227	1849228	chr3:1849228:G:A	rs2731503	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	1903568	1903569	chr3:1903569:T:C	rs66861863	T	C	T	Sox1_MA0870.1	5	1	+	4.987287190615187	-1.9158775680325728	CACTATATCATTGGA
chr3	2026618	2026619	chr3:2026619:A:G	rs9310604	A	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	2083202	2083203	chr3:2083203:C:A	chr3:2083203:C:A	C	A	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	2177636	2177637	chr3:2177637:A:G	rs115249398	A	G	A	Sox1_MA0870.1	11	1	-	7.025225871192841	2.069830885382507	CACAATCCCATTGGT
chr3	2207227	2207228	chr3:2207228:T:C	rs1153540	T	C	T	Sox1_MA0870.1	10	1	+	7.058584530187567	0.24988744605123436	CACAATAATATTGAA
chr3	2689222	2689223	chr3:2689223:T:C	rs908489	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr3	2851093	2851094	chr3:2851094:A:T	rs9825107	A	T	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	2897127	2897128	chr3:2897128:A:G	rs73005472	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	3100108	3100109	chr3:3100109:C:T	rs6442777	C	T	C	Sox1_MA0870.1	8	1	+	6.921878041876475	2.7402684952391922	AACACTGGCCTTGTT
chr3	3316102	3316103	chr3:3316103:G:A	rs12630974	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	3655188	3655189	chr3:3655189:T:C	rs9873276	T	C	T	Sox1_MA0870.1	10	1	+	5.527979738832315	-1.2807173453040193	AACAATACCATTTAC
chr3	3771808	3771809	chr3:3771809:A:G	rs115274801	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	3771811	3771812	chr3:3771812:G:A	rs148304528	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	4426913	4426914	chr3:4426914:C:G	chr3:4426914:C:G	C	G	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	4426913	4426914	chr3:4426914:C:T	rs2322683	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	4426917	4426918	chr3:4426918:C:G	rs1327234212	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr3	4507283	4507284	chr3:4507284:A:G	rs114506187	A	G	A	Sox1_MA0870.1	5	1	-	11.11850361384398	4.2153388551962205	CACAATAACATTGGG
chr3	4656242	4656243	chr3:4656243:A:G	rs12486970	A	G	A	Sox1_MA0870.1	10	1	-	4.304614220204031	-2.5040828639323025	CACAATTGCATTACG
chr3	4656261	4656262	chr3:4656262:C:G	rs765636821	C	G	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	4672533	4672534	chr3:4672534:A:T	rs145319823	A	T	A	Sox1_MA0870.1	31	0	+	0	0	.
chr3	4712440	4712441	chr3:4712441:T:C	rs9880562	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	4827905	4827906	chr3:4827906:A:G	rs3805025	A	G	A	Sox1_MA0870.1	4	1	+	8.684843160771688	1.907264906601502	GTCAATAACAGTGCT
chr3	4865838	4865839	chr3:4865839:A:G	rs2099836	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr3	4902192	4902193	chr3:4902193:C:T	rs7644690	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr3	4902193	4902194	chr3:4902194:G:A	rs1400837055	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr3	4976969	4976970	chr3:4976970:A:T	rs540105376	A	T	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	4989275	4989276	chr3:4989276:C:T	rs2137947	C	T	C	Sox1_MA0870.1	3	1	-	3.9657197386419774	10.866309405839203	AACGATTACAGTGGT
chr3	5458747	5458748	chr3:5458748:T:C	rs7621665	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr3	5961026	5961027	chr3:5961027:A:G	rs4686001	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	6055885	6055886	chr3:6055886:C:T	rs28534488	C	T	T	Sox1_MA0870.1	7	1	+	6.889095542136941	6.877266489588568	AACACTGCCATTATT
chr3	6079813	6079814	chr3:6079814:A:G	rs13088182	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	6097252	6097253	chr3:6097253:G:C	rs62245996	G	C	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	6100081	6100082	chr3:6100082:T:C	rs6794064	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	6173604	6173605	chr3:6173605:C:T	rs7636014	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr3	6274053	6274054	chr3:6274054:A:G	rs6443041	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	6642796	6642797	chr3:6642797:A:T	rs191605	A	T	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	6680737	6680738	chr3:6680738:C:G	rs17045703	C	G	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr3	6798853	6798854	chr3:6798854:C:A	rs163679	C	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	6833131	6833132	chr3:6833132:A:G	rs437555	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr3	7073415	7073416	chr3:7073416:C:T	chr3:7073416:C:T	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr3	7094369	7094370	chr3:7094370:A:C	rs73808676	A	C	A	Sox1_MA0870.1	14	1	+	5.05772014656338	5.4477240668671225	CACAATATCATTTCA
chr3	7190172	7190173	chr3:7190173:A:T	rs13326811	A	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr3	7475602	7475603	chr3:7475603:T:C	rs1391902	T	C	T	Sox1_MA0870.1	4	1	-	10.625370417120013	3.8477921629498257	AACAATAACAGTGAC
chr3	7477959	7477960	chr3:7477960:C:G	rs779699	C	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	7659301	7659302	chr3:7659302:G:A	rs73023704	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr3	7779592	7779593	chr3:7779593:T:C	rs55804114	T	C	T	Sox1_MA0870.1	1	1	-	10.206082445202016	6.107791789808875	CACAATAGCAGTGGT
chr3	7875716	7875717	chr3:7875717:C:A	rs447954	C	A	A	Sox1_MA0870.1	2	1	+	4.480565083508555	-2.428189695806665	AACAAATTCAATGTT
chr3	7897867	7897868	chr3:7897868:C:T	rs36084967	C	T	C	Sox1_MA0870.1	2	1	+	4.922079294683584	-1.9866754846316366	ATCACTCACATTGCT
chr3	8145919	8145920	chr3:8145920:G:A	rs1967402	G	A	A	Sox1_MA0870.1	14	1	-	6.220269473824683	7.731278878306087	AACATTTACAGTGTC
chr3	8307758	8307759	chr3:8307759:C:A	rs564240612	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	8504415	8504416	chr3:8504416:G:A	rs9312023	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr3	8553310	8553311	chr3:8553311:C:T	rs73022309	C	T	C	Sox1_MA0870.1	12	1	-	5.19230695615624	-1.716447823158981	GACCCTGCCATTGCT
chr3	8565846	8565847	chr3:8565847:G:C	rs1965215	G	C	G	Sox1_MA0870.1	22	0	+	0	0	.
chr3	8589927	8589928	chr3:8589928:C:A	rs4686276	C	A	C	Sox1_MA0870.1	24	0	+	0	0	.
chr3	8597926	8597927	chr3:8597927:T:G	rs411544	T	G	T	Sox1_MA0870.1	7	1	+	5.954988482690066	5.999600034977973	TACAATGTGATTGCA
chr3	8712338	8712339	chr3:8712339:T:C	rs73130711	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr3	8712352	8712353	chr3:8712353:G:A	rs73810962	G	A	A	Sox1_MA0870.1	8	1	-	3.1236427335720927	-1.0579668130651894	CACACAGCCAGTGCT
chr3	8963065	8963066	chr3:8963066:C:T	rs45585931	C	T	C	Sox1_MA0870.1	12	1	-	5.749089975590044	-1.1596648037251769	AACAATAACATGGAG
chr3	8978687	8978688	chr3:8978688:G:A	rs4312638	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr3	8978705	8978706	chr3:8978706:G:C	rs6443216	G	C	C	Sox1_MA0870.1	12	1	+	3.910614449003981	-2.99814033031124	AACACTCACATCGTC
chr3	9020029	9020030	chr3:9020030:T:G	rs17798894	T	G	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	9056738	9056739	chr3:9056739:G:A	rs2664098	G	A	A	Sox1_MA0870.1	13	1	-	4.636183100628935	6.813838398079929	CACAATGGGAGTGCG
chr3	9217797	9217798	chr3:9217798:A:G	rs2664099	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr3	9247966	9247967	chr3:9247967:C:A	rs145046376	C	A	C	Sox1_MA0870.1	30	0	-	0	0	.
chr3	9452630	9452631	chr3:9452631:A:G	rs112467087	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	9808873	9808874	chr3:9808874:C:T	rs114855956	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr3	9898316	9898317	chr3:9898317:C:G	rs183734953	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr3	10003345	10003346	chr3:10003346:C:A	rs13066757	C	A	c	Sox1_MA0870.1	29	0	+	0	0	.
chr3	10279832	10279833	chr3:10279833:G:A	rs10285	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr3	10318324	10318325	chr3:10318325:G:A	rs83604	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	10551460	10551461	chr3:10551461:C:T	rs553352558	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr3	10553407	10553408	chr3:10553408:T:C	rs1009398193	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr3	10561034	10561035	chr3:10561035:C:A	rs138992826	C	A	C	Sox1_MA0870.1	34	0	-	0	0	.
chr3	10803731	10803732	chr3:10803732:A:T	rs2581221	A	T	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	11050199	11050200	chr3:11050200:G:T	rs3856788	G	T	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr3	11080726	11080727	chr3:11080727:G:A	rs115089370	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	11176388	11176389	chr3:11176389:T:G	rs6442235	T	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr3	11567839	11567840	chr3:11567840:A:G	rs2447602	A	G	A	Sox1_MA0870.1	5	1	-	9.928847797650775	3.025683039003017	AACAATAAAATTGTA
chr3	11600190	11600191	chr3:11600191:A:C	rs73025163	A	C	A	Sox1_MA0870.1	17	0	-	0	0	.
chr3	11604613	11604614	chr3:11604614:G:C	rs79617729	G	C	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	11614365	11614366	chr3:11614366:C:T	rs61521214	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr3	11614372	11614373	chr3:11614373:C:T	rs57564733	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr3	11701472	11701473	chr3:11701473:G:A	rs6775028	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	11703424	11703425	chr3:11703425:C:G	rs36068197	C	G	C	Sox1_MA0870.1	4	1	+	4.746839724560916	-0.07392559498405549	ATCACTACCAGTGAG
chr3	12239370	12239371	chr3:12239371:G:A	rs113766050	G	A	G	Sox1_MA0870.1	8	1	-	4.797864214750156	0.6162546681128739	AAGAATACCAGTGAT
chr3	12293712	12293713	chr3:12293713:A:G	rs2920504	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr3	12489921	12489922	chr3:12489922:G:A	rs12495784	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr3	12513993	12513994	chr3:12513994:C:T	rs116103198	C	T	C	Sox1_MA0870.1	8	1	+	5.103570149647573	0.9219606030102905	AACACAAGCATTGAA
chr3	12973493	12973494	chr3:12973494:T:C	rs12492009	T	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	12985111	12985112	chr3:12985112:C:T	rs360744	C	T	-	Sox1_MA0870.1	-11	0	+	0	0	.
chr3	13016185	13016186	chr3:13016186:C:T	rs112087772	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr3	13016203	13016204	chr3:13016204:A:G	rs534201537	A	G	A	Sox1_MA0870.1	13	1	-	4.168803189767205	1.99114789231621	GACACTGGCAATGTC
chr3	13016220	13016221	chr3:13016221:G:A	rs559855862	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	13033849	13033850	chr3:13033850:T:A	rs11128629	T	A	A	Sox1_MA0870.1	4	1	-	4.176076834751818	-2.601501419418369	AACAATTGCACTGGG
chr3	13202846	13202847	chr3:13202847:A:G	rs143530452	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr3	13202883	13202884	chr3:13202884:A:C	rs4684917	A	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	13277159	13277160	chr3:13277160:C:T	rs630814	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr3	13277203	13277204	chr3:13277204:A:C	rs191561006	A	C	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	13646656	13646657	chr3:13646657:C:T	rs4684974	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	13659366	13659367	chr3:13659367:T:C	rs13078230	T	C	T	Sox1_MA0870.1	9	1	-	7.318856369672982	0.41010159035776217	AACACTGACATTATT
chr3	13754179	13754180	chr3:13754180:T:C	rs7634577	T	C	T	Sox1_MA0870.1	13	1	-	5.696866000506963	5.3998443004590495	GAAAATACCATTGAT
chr3	13857120	13857121	chr3:13857121:C:T	rs9819887	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	14131326	14131327	chr3:14131327:C:T	rs17038942	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	14147051	14147052	chr3:14147052:T:C	rs568513655	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr3	14175776	14175777	chr3:14175777:T:G	rs147123477	T	G	T	Sox1_MA0870.1	11	1	+	7.7582644778439604	0.8555317909871275	CACTATTACAGTGTT
chr3	14175788	14175789	chr3:14175789:C:A	rs1982546	C	A	C	Sox1_MA0870.1	23	0	+	0	0	.
chr3	14201031	14201032	chr3:14201032:T:A	rs73815319	T	A	T	Sox1_MA0870.1	0	1	-	8.636620699987922	6.697946594285463	AACAATAACATTTCT
chr3	14224099	14224100	chr3:14224100:C:T	rs9833599	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr3	14346417	14346418	chr3:14346418:A:G	rs749856	A	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr3	14439269	14439270	chr3:14439270:T:C	rs6790433	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	14514666	14514667	chr3:14514667:G:A	rs4684228	G	A	G	Sox1_MA0870.1	12	1	+	7.06154777710624	0.15279299779101974	AACAATGGGATCGTT
chr3	14597949	14597950	chr3:14597950:T:G	rs55712900	T	G	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	14639502	14639503	chr3:14639503:A:C	rs59295835	A	C	a	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	14787773	14787774	chr3:14787774:T:C	rs13080265	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	14958673	14958674	chr3:14958674:T:G	rs116130753	T	G	t	Sox1_MA0870.1	14	1	+	6.646794676742072	4.921112589023968	AACAATAGGATTTTT
chr3	15361022	15361023	chr3:15361023:G:A	rs73816889	G	A	G	Sox1_MA0870.1	8	1	+	5.478306453147219	3.355639791729342	CACACTGGGATTGAT
chr3	15517444	15517445	chr3:15517445:G:T	rs78868657	G	T	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	15519207	15519208	chr3:15519208:T:C	rs114071457	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr3	15602687	15602688	chr3:15602688:G:A	rs73030389	G	A	G	Sox1_MA0870.1	13	1	-	4.728669720000424	6.906325017451419	TTCACTTCCAGTGCT
chr3	15606816	15606817	chr3:15606817:C:G	rs34356435	C	G	C	Sox1_MA0870.1	8	1	-	6.565158012404389	10.335661005304726	TACAATTGGATTGCA
chr3	16148824	16148825	chr3:16148825:T:G	rs73152332	T	G	T	Sox1_MA0870.1	9	1	-	5.830265553520939	-1.078489225794281	AACATTTACAGTGTA
chr3	16304280	16304281	chr3:16304281:G:C	rs189763180	G	C	G	Sox1_MA0870.1	15	0	+	0	0	.
chr3	16463049	16463050	chr3:16463050:C:T	rs17042294	C	T	T	Sox1_MA0870.1	33	0	-	0	0	.
chr3	16550913	16550914	chr3:16550914:G:C	rs141665842	G	C	G	Sox1_MA0870.1	7	1	-	3.6004479487863073	3.6332304485258407	GACAATGCCTTTGCG
chr3	16551008	16551009	chr3:16551009:A:G	chr3:16551009:A:G	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr3	16551039	16551040	chr3:16551040:A:G	chr3:16551040:A:G	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	16633619	16633620	chr3:16633620:A:C	rs7647846	A	C	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	16670872	16670873	chr3:16670873:T:A	rs75913453	T	A	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	16910194	16910195	chr3:16910195:G:A	rs75929553	G	A	G	Sox1_MA0870.1	12	1	+	4.474675351152822	-2.4340794281623985	CACAATTTCTTTGCC
chr3	16941280	16941281	chr3:16941281:A:T	rs78222630	A	T	A	Sox1_MA0870.1	3	1	+	4.997942553651342	-0.5163527524259927	CTCAATTCCACTGTT
chr3	16943300	16943301	chr3:16943301:G:A	rs9830460	G	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	17057816	17057817	chr3:17057817:T:C	rs7610811	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr3	17233587	17233588	chr3:17233588:T:C	rs113993660	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	17276945	17276946	chr3:17276946:A:C	rs2733485	A	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	17518839	17518840	chr3:17518840:G:T	rs73153096	G	T	G	Sox1_MA0870.1	1	1	-	3.482715457475011	7.251855842319509	CCCCATAGCAGTGTC
chr3	17664768	17664769	chr3:17664769:C:T	rs4243836	C	T	T	Sox1_MA0870.1	28	0	+	0	0	.
chr3	18146887	18146888	chr3:18146888:A:G	rs1464044	A	G	G	Sox1_MA0870.1	10	1	-	4.38908584821513	-2.4196112359212036	AACATTTCCATTGGC
chr3	18185873	18185874	chr3:18185874:T:C	rs151077001	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	18386957	18386958	chr3:18386958:C:T	rs13321420	C	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	18590532	18590533	chr3:18590533:G:A	rs336613	G	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr3	18739092	18739093	chr3:18739093:C:T	rs59995677	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	19506613	19506614	chr3:19506614:G:A	rs76570061	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr3	19739454	19739455	chr3:19739455:A:C	rs185878587	A	C	A	Sox1_MA0870.1	10	1	-	7.673955313922098	5.432830385358537	AACAATTTCATTATG
chr3	19757797	19757798	chr3:19757798:T:G	rs4858093	T	G	T	Sox1_MA0870.1	25	0	-	0	0	.
chr3	20023106	20023107	chr3:20023107:G:T	rs74406340	G	T	G	Sox1_MA0870.1	27	0	+	0	0	.
chr3	20081338	20081339	chr3:20081339:C:T	rs6800250	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	20081366	20081367	chr3:20081367:T:A	rs73822403	T	A	T	Sox1_MA0870.1	23	0	+	0	0	.
chr3	20258775	20258776	chr3:20258776:A:T	rs7631707	A	T	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	20316741	20316742	chr3:20316742:A:G	rs7609905	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr3	20844633	20844634	chr3:20844634:G:A	rs7629544	G	A	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	21258535	21258536	chr3:21258536:A:T	rs13086810	A	T	A	Sox1_MA0870.1	4	1	+	4.480565083508555	-2.2970131706616326	AACAAATTCAATGTT
chr3	21331323	21331324	chr3:21331324:C:T	rs9819690	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr3	21393280	21393281	chr3:21393281:A:T	rs341862	A	T	A	Sox1_MA0870.1	1	1	+	5.241674119396006	1.9643898722348645	AACACAGACAGTGTG
chr3	21393354	21393355	chr3:21393355:A:C	rs61164437	A	C	G	Sox1_MA0870.1	6	1	-	4.363103746995103	3.797545769568685	AGCATTTACATTGTC
chr3	21445306	21445307	chr3:21445307:A:G	rs3913942	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr3	21477907	21477908	chr3:21477908:A:G	rs7644446	A	G	G	Sox1_MA0870.1	25	0	-	0	0	.
chr3	21509996	21509997	chr3:21509997:C:T	rs9862072	C	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	21581310	21581311	chr3:21581311:C:A	rs12637139	C	A	C	Sox1_MA0870.1	14	1	-	4.0760191395729315	5.801701227291035	AACAATTGCATTTGG
chr3	21691088	21691089	chr3:21691089:A:G	rs79069758	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	21719453	21719454	chr3:21719454:G:C	rs79003092	G	C	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	21750183	21750184	chr3:21750184:C:T	rs115015656	C	T	C	Sox1_MA0870.1	0	1	+	4.939190339464544	4.2368135823170645	CCCACTTCCAGTGCT
chr3	21755223	21755224	chr3:21755224:A:T	rs62236199	A	T	A	Sox1_MA0870.1	0	1	-	8.010453231164684	9.949127336867145	TACAATTTTATTGCT
chr3	21942792	21942793	chr3:21942793:T:G	chr3:21942793:T:G	T	G	T	Sox1_MA0870.1	17	0	+	0	0	.
chr3	21954536	21954537	chr3:21954537:G:T	rs1486397	G	T	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	21995251	21995252	chr3:21995252:G:C	rs1497928	G	C	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	22016320	22016321	chr3:22016321:A:G	rs1383091	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	22016323	22016324	chr3:22016324:T:C	rs13083345	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	22016339	22016340	chr3:22016340:G:A	rs28638460	G	A	G	Sox1_MA0870.1	7	1	+	3.999845901309637	4.396824229106145	CACAATGGCATTAGT
chr3	22097920	22097921	chr3:22097921:A:G	rs12491081	A	G	g	Sox1_MA0870.1	9	1	+	6.156734954358566	-0.752019824956655	GACAGTGGCATTGTC
chr3	22229438	22229439	chr3:22229439:C:T	rs1025162940	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr3	22290575	22290576	chr3:22290576:T:C	rs147916259	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	22315992	22315993	chr3:22315993:G:A	rs73821883	G	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr3	22317009	22317010	chr3:22317010:A:G	rs993919	A	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	22352989	22352990	chr3:22352990:G:C	rs7644804	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr3	22352994	22352995	chr3:22352995:G:A	rs9824408	G	A	G	Sox1_MA0870.1	11	1	-	4.484216996774448	9.439611982584783	AACAAAGACATCGTG
chr3	22361157	22361158	chr3:22361158:T:A	rs559752613	T	A	t	Sox1_MA0870.1	10	1	+	6.042722816270582	-0.7659742678657517	AACAAATTCATTGAA
chr3	22453968	22453969	chr3:22453969:G:A	rs951605	G	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr3	22562567	22562568	chr3:22562568:C:T	rs4858416	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	22562572	22562573	chr3:22562573:C:G	rs6765561	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	22692036	22692037	chr3:22692037:A:G	rs1335189644	A	G	A	Sox1_MA0870.1	4	1	+	3.4513728020511585	-3.3262054521190305	CACAATTACTTTGGC
chr3	22714192	22714193	chr3:22714193:A:T	rs535632906	A	T	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	22900430	22900431	chr3:22900431:T:C	rs1355737	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr3	22900441	22900442	chr3:22900442:G:A	rs1355736	G	A	A	Sox1_MA0870.1	4	1	-	4.438682836799146	-0.3820824827458261	AACACTAACTGTGCT
chr3	23055994	23055995	chr3:23055995:A:T	rs843989	A	T	A	Sox1_MA0870.1	28	0	-	0	0	.
chr3	23099833	23099834	chr3:23099834:A:T	rs6778603	A	T	A	Sox1_MA0870.1	0	1	+	5.987128884847394	4.048454779144934	AACAAAAGCAGTGCA
chr3	23471564	23471565	chr3:23471565:T:G	rs17013320	T	G	G	Sox1_MA0870.1	14	1	+	4.510312473792372	2.784630386074269	ACCACTGAGATTGCT
chr3	23543412	23543413	chr3:23543413:G:A	rs9815921	G	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr3	23568047	23568048	chr3:23568048:C:A	rs150064735	C	A	C	Sox1_MA0870.1	26	0	+	0	0	.
chr3	23568249	23568250	chr3:23568250:C:G	rs36021750	C	G	C	Sox1_MA0870.1	2	1	+	6.66415970115219	-0.24459507816303128	CACAATTCCCTTGTC
chr3	23667716	23667717	chr3:23667717:C:T	rs60353896	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr3	23671912	23671913	chr3:23671913:G:T	rs564180260	G	T	G	Sox1_MA0870.1	14	1	+	4.392419021240846	6.11810110895895	TGCACTTGCAGTGTG
chr3	23704477	23704478	chr3:23704478:C:G	rs9819064	C	G	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	23829910	23829911	chr3:23829911:G:A	rs2045300	G	A	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	23982556	23982557	chr3:23982557:C:T	rs62253391	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	23982574	23982575	chr3:23982575:A:T	rs187201648	A	T	A	Sox1_MA0870.1	14	1	+	6.384107212643901	8.285120537429048	AACAAAAACAGTGCA
chr3	24077889	24077890	chr3:24077890:T:C	rs79838200	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr3	24087000	24087001	chr3:24087001:A:G	rs896449532	A	G	A	Sox1_MA0870.1	4	1	+	6.321448841466868	-0.4561294127033194	GATAATTACATTGCT
chr3	24213002	24213003	chr3:24213003:C:T	rs941104107	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	24213025	24213026	chr3:24213026:C:T	rs7632417	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr3	24213058	24213059	chr3:24213059:C:T	rs746875	C	T	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	24263044	24263045	chr3:24263045:G:A	rs73823270	G	A	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	24263050	24263051	chr3:24263051:T:C	rs73823271	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	24741817	24741818	chr3:24741818:T:C	rs12715061	T	C	T	Sox1_MA0870.1	4	1	-	9.59576158943236	2.8181833352621717	GACAATGACATTGAA
chr3	24741821	24741822	chr3:24741822:C:T	rs73035585	C	T	C	Sox1_MA0870.1	0	1	-	9.59576158943236	10.937884732239112	GACAATGACATTGAA
chr3	24773998	24773999	chr3:24773999:T:G	rs142504926	T	G	T	Sox1_MA0870.1	31	0	-	0	0	.
chr3	24892709	24892710	chr3:24892710:A:T	rs13095194	A	T	A	Sox1_MA0870.1	33	0	-	0	0	.
chr3	24918111	24918112	chr3:24918112:A:G	rs9843036	A	G	G	Sox1_MA0870.1	7	1	+	9.577978648883937	9.18100032108743	CAGAATAACATTGTT
chr3	24918123	24918124	chr3:24918124:G:C	rs73049480	G	C	G	Sox1_MA0870.1	19	0	+	0	0	.
chr3	24918159	24918160	chr3:24918160:A:G	rs11712813	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	24940130	24940131	chr3:24940131:A:T	rs7648839	A	T	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	24995011	24995012	chr3:24995012:C:T	rs115342535	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr3	25032523	25032524	chr3:25032524:C:T	rs1603996	C	T	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	25034832	25034833	chr3:25034833:T:C	rs79543019	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr3	25124854	25124855	chr3:25124855:A:G	rs76988318	A	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr3	25124860	25124861	chr3:25124861:C:A	rs116698427	C	A	C	Sox1_MA0870.1	32	0	+	0	0	.
chr3	25387720	25387721	chr3:25387721:T:A	rs79116543	T	A	T	Sox1_MA0870.1	31	0	-	0	0	.
chr3	25461004	25461005	chr3:25461005:C:T	rs74820342	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr3	25489882	25489883	chr3:25489883:G:T	rs73046112	G	T	G	Sox1_MA0870.1	22	0	+	0	0	.
chr3	25501783	25501784	chr3:25501784:C:T	rs1153582	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	25507470	25507471	chr3:25507471:C:T	rs1997353	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	26062084	26062085	chr3:26062085:A:G	rs13063917	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr3	26682242	26682243	chr3:26682243:C:G	rs115340670	C	G	C	Sox1_MA0870.1	21	0	+	0	0	.
chr3	26922868	26922869	chr3:26922869:T:C	rs13089402	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	27043428	27043429	chr3:27043429:C:G	rs73051722	C	G	C	Sox1_MA0870.1	24	0	-	0	0	.
chr3	27073105	27073106	chr3:27073106:A:C	rs12636719	A	C	A	Sox1_MA0870.1	11	1	-	3.990744386569178	-2.911988300287655	ACCACTAGCAGTGGG
chr3	27074399	27074400	chr3:27074400:A:G	rs12495557	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr3	27217071	27217072	chr3:27217072:G:T	rs62256307	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr3	27531328	27531329	chr3:27531329:C:T	rs13070806	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	27667093	27667094	chr3:27667094:A:G	rs76604855	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	27881035	27881036	chr3:27881036:T:C	rs73049287	T	C	T	Sox1_MA0870.1	5	1	+	3.4658744669611106	-3.437290291686648	GGAAATAGCATTGTC
chr3	27913041	27913042	chr3:27913042:A:G	rs114917147	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	28022915	28022916	chr3:28022916:C:T	rs365482	C	T	T	Sox1_MA0870.1	20	0	+	0	0	.
chr3	28140269	28140270	chr3:28140270:A:G	rs7636966	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr3	28211354	28211355	chr3:28211355:T:A	rs1042391960	T	A	T	Sox1_MA0870.1	24	0	-	0	0	.
chr3	28249451	28249452	chr3:28249452:A:G	rs12498078	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr3	28351106	28351107	chr3:28351107:T:C	rs6763313	T	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr3	28743940	28743941	chr3:28743941:A:G	rs73066922	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr3	28780478	28780479	chr3:28780479:T:C	rs9862861	T	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr3	29202742	29202743	chr3:29202743:G:T	rs2048896	G	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	29335150	29335151	chr3:29335151:G:T	rs9845524	G	T	G	Sox1_MA0870.1	13	1	-	7.907817598188498	6.739946869050335	AACACTGACAGTGCA
chr3	29390306	29390307	chr3:29390307:A:G	rs4491856	A	G	g	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	29415760	29415761	chr3:29415761:G:A	rs144508398	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr3	29564842	29564843	chr3:29564843:A:G	rs3773084	A	G	A	Sox1_MA0870.1	5	1	-	8.762141045258172	1.8589762866104116	AACTATGGCATTGTC
chr3	29604244	29604245	chr3:29604245:T:C	rs7634557	T	C	T	Sox1_MA0870.1	1	1	-	9.154419868396579	5.056129213003439	CACAATTATATTGCT
chr3	29644379	29644380	chr3:29644380:A:G	rs17613797	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	29648893	29648894	chr3:29648894:T:C	rs9877765	T	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	30285693	30285694	chr3:30285694:T:C	rs7648080	T	C	t	Sox1_MA0870.1	7	1	+	5.371475796566646	5.383304849115019	CACAACATGATTGTT
chr3	30451858	30451859	chr3:30451859:C:T	rs11129405	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	30643190	30643191	chr3:30643191:G:A	rs9867701	G	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	30775121	30775122	chr3:30775122:T:C	rs59609343	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr3	30813866	30813867	chr3:30813867:A:G	rs1158453	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	30846654	30846655	chr3:30846655:C:G	rs9809336	C	G	G	Sox1_MA0870.1	2	1	+	5.181263437498302	-1.7274913418169184	AACAAAAAGAGTGTC
chr3	30886836	30886837	chr3:30886837:G:T	rs55644344	G	T	G	Sox1_MA0870.1	14	1	-	4.628762823213492	4.2387589029097485	ATCAACTCCATTGTC
chr3	31075883	31075884	chr3:31075884:A:G	rs1485925	A	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr3	31286218	31286219	chr3:31286219:A:G	rs142787232	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	31307160	31307161	chr3:31307161:T:C	rs7638704	T	C	C	Sox1_MA0870.1	6	1	+	5.338387852619895	0.9222375655009931	AACAAGTCCATTGCA
chr3	31407722	31407723	chr3:31407723:T:C	rs73824128	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	31637019	31637020	chr3:31637020:A:G	rs9828641	A	G	A	Sox1_MA0870.1	10	1	-	10.536628795641086	3.727931711504752	AACAAAATCATTGTG
chr3	31684632	31684633	chr3:31684633:C:G	rs17027964	C	G	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	31768928	31768929	chr3:31768929:C:T	rs146753377	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	31880944	31880945	chr3:31880945:G:A	rs79333014	G	A	A	Sox1_MA0870.1	6	1	+	6.095490147969219	7.634096841109936	ACCAATGACAGTGCA
chr3	31996359	31996360	chr3:31996360:C:G	rs976188	C	G	-	Sox1_MA0870.1	26	0	-	0	0	.
chr3	32048920	32048921	chr3:32048921:A:C	rs6778224	A	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	32235803	32235804	chr3:32235804:A:G	rs4955267	A	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr3	32304206	32304207	chr3:32304207:T:G	rs1398101	T	G	T	Sox1_MA0870.1	31	0	+	0	0	.
chr3	32423239	32423240	chr3:32423240:A:G	rs17029459	A	G	A	Sox1_MA0870.1	1	1	+	6.59111640663995	2.492825751246809	GATAATTGCATTGTC
chr3	32424294	32424295	chr3:32424295:C:T	rs78140886	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr3	32424311	32424312	chr3:32424312:G:A	rs112841255	G	A	G	Sox1_MA0870.1	7	1	-	4.027060838185859	4.015231785637486	TACAATACCAGTTCT
chr3	32424325	32424326	chr3:32424326:G:A	rs80121002	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	32439178	32439179	chr3:32439179:A:G	rs117521161	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	32439200	32439201	chr3:32439201:C:T	rs12152273	C	T	C	Sox1_MA0870.1	8	1	+	5.309780721851898	1.1281711752146155	AACACTTGCGTTGCT
chr3	32713051	32713052	chr3:32713052:G:T	rs7642441	G	T	G	Sox1_MA0870.1	6	1	+	7.336995198595739	7.902553176022154	TAAAATGACATTGTT
chr3	32744035	32744036	chr3:32744036:A:G	rs114049936	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr3	32837181	32837182	chr3:32837182:G:A	rs115239499	G	A	g	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	32958688	32958689	chr3:32958689:A:C	rs6807638	A	C	A	Sox1_MA0870.1	32	0	-	0	0	.
chr3	32993224	32993225	chr3:32993225:T:G	rs6792585	T	G	T	Sox1_MA0870.1	10	1	+	7.673955313922098	5.432830385358537	AACAATTTCATTCTG
chr3	33363421	33363422	chr3:33363422:C:T	rs12486192	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr3	33539721	33539722	chr3:33539722:T:A	rs75203728	T	A	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	34019737	34019738	chr3:34019738:G:A	rs4075756	G	A	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	34189440	34189441	chr3:34189441:C:T	rs11712920	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	34419832	34419833	chr3:34419833:G:A	rs4678468	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	34683332	34683333	chr3:34683333:G:A	rs9878670	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr3	34777714	34777715	chr3:34777715:C:T	rs684871	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	34948199	34948200	chr3:34948200:T:C	rs4450749	T	C	T	Sox1_MA0870.1	9	1	-	4.075485988868667	-2.8332687904465526	AACAAAAACATAGTG
chr3	35178969	35178970	chr3:35178970:A:T	rs13090791	A	T	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	35488687	35488688	chr3:35488688:T:A	rs1403468	T	A	A	Sox1_MA0870.1	5	1	+	7.410706681081418	2.3915766677708845	CACAATATCCTTGTG
chr3	35830933	35830934	chr3:35830934:G:T	rs55950610	G	T	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	35895444	35895445	chr3:35895445:A:C	rs11129673	A	C	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	35955380	35955381	chr3:35955381:A:G	rs1488092	A	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr3	36136034	36136035	chr3:36136035:G:A	rs78891919	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	36201718	36201719	chr3:36201719:C:T	rs73827501	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	36482424	36482425	chr3:36482425:C:A	rs77915587	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	36563269	36563270	chr3:36563270:G:A	rs2361279	G	A	G	Sox1_MA0870.1	13	1	+	4.796780261890112	5.093801961938027	AACCCTAACAGTGGT
chr3	36971380	36971381	chr3:36971381:G:A	rs13326073	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	36971384	36971385	chr3:36971385:C:T	rs899528038	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	36971398	36971399	chr3:36971399:A:G	rs958540547	A	G	A	Sox1_MA0870.1	9	1	+	4.319956171195766	-2.5887986081194545	CACATTCACATTGTT
chr3	36991970	36991971	chr3:36991971:T:G	rs4647200	T	G	T	Sox1_MA0870.1	31	0	+	0	0	.
chr3	37109496	37109497	chr3:37109497:C:G	rs6806252	C	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr3	37200935	37200936	chr3:37200936:G:C	rs9831012	G	C	t	Sox1_MA0870.1	8	1	-	4.080323912903307	0.30982092000297	GATAATTACAGTGCT
chr3	37695368	37695369	chr3:37695369:C:T	rs188531016	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	37742404	37742405	chr3:37742405:C:T	rs77147659	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr3	37771235	37771236	chr3:37771236:G:A	rs72860979	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	37923701	37923702	chr3:37923702:A:G	rs9815006	A	G	G	Sox1_MA0870.1	14	1	-	4.717750021060329	3.2067406165789247	TAAAATGTCATTGCT
chr3	38004531	38004532	chr3:38004532:A:C	rs9843506	A	C	A	Sox1_MA0870.1	3	1	+	8.351375692681088	3.265610767642916	AGCAATTGCATTGCG
chr3	38228337	38228338	chr3:38228338:A:G	rs111369288	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	38327691	38327692	chr3:38327692:T:C	rs114234361	T	C	T	Sox1_MA0870.1	13	1	+	5.1146285257706605	2.9369732283196655	AACCATAAGAGTGTC
chr3	39051834	39051835	chr3:39051835:G:A	rs6599003	G	A	A	Sox1_MA0870.1	10	1	-	3.739760764053125	10.548457848189459	AACAAAACCACTGTG
chr3	39051851	39051852	chr3:39051852:T:C	rs563781546	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	39138367	39138368	chr3:39138368:T:C	rs77110687	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	39151167	39151168	chr3:39151168:C:T	rs546021249	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr3	39292009	39292010	chr3:39292010:A:C	rs80127801	A	C	a	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	39413862	39413863	chr3:39413863:C:T	rs12638341	C	T	C	Sox1_MA0870.1	12	1	-	4.303752532790844	-2.6050022465243763	ATCTCTACCAGTGTT
chr3	39942130	39942131	chr3:39942131:C:A	rs78237660	C	A	C	Sox1_MA0870.1	2	1	+	4.592271419024649	-2.316483360290571	CACCATAACAATGTT
chr3	39981249	39981250	chr3:39981250:G:A	rs9881911	G	A	g	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	40058079	40058080	chr3:40058080:T:C	rs9863428	T	C	C	Sox1_MA0870.1	13	1	+	10.959378623076569	8.781723325625574	CACCATATCATTGTT
chr3	40206108	40206109	chr3:40206109:G:A	rs114138314	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr3	40206117	40206118	chr3:40206118:C:G	rs4426621	C	G	C	Sox1_MA0870.1	29	0	+	0	0	.
chr3	40310642	40310643	chr3:40310643:C:T	rs3214006	C	T	C	Sox1_MA0870.1	8	1	+	3.9136863302416915	-0.2679232163955906	AACGATAACATTATT
chr3	40940877	40940878	chr3:40940878:G:A	rs79316935	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr3	41057489	41057490	chr3:41057490:C:A	rs394831	C	A	C	Sox1_MA0870.1	2	1	+	5.149601571778095	-1.7591532075371248	AACCATAACAGTGAA
chr3	41148481	41148482	chr3:41148482:T:C	chr3:41148482:T:C	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	41502627	41502628	chr3:41502628:T:C	rs1795322	T	C	T	Sox1_MA0870.1	4	1	-	9.867158655159207	3.0895804009890186	ATCAATAGTATTGTT
chr3	41682183	41682184	chr3:41682184:A:G	rs78367972	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	42032657	42032658	chr3:42032658:G:A	rs13315860	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	42077880	42077881	chr3:42077881:T:A	rs6801363	T	A	A	Sox1_MA0870.1	7	1	-	7.571139529847017	7.129549649762603	GACAATAACATTCTA
chr3	42181795	42181796	chr3:42181796:C:G	rs7641090	C	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	42275390	42275391	chr3:42275391:G:C	rs79199376	G	C	G	Sox1_MA0870.1	25	0	-	0	0	.
chr3	42518949	42518950	chr3:42518950:G:A	rs450812	G	A	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	42699367	42699368	chr3:42699368:C:A	rs60176972	C	A	C	Sox1_MA0870.1	24	0	+	0	0	.
chr3	42736370	42736371	chr3:42736371:A:G	rs11922251	A	G	G	Sox1_MA0870.1	29	0	-	0	0	.
chr3	43000807	43000808	chr3:43000808:G:T	rs62249016	G	T	G	Sox1_MA0870.1	12	1	+	7.979490788325346	1.0707360090101257	GACCATTTCATTGTA
chr3	43022081	43022082	chr3:43022082:C:G	rs150806078	C	G	C	Sox1_MA0870.1	23	0	-	0	0	.
chr3	43029354	43029355	chr3:43029355:C:T	rs704903	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr3	43071715	43071716	chr3:43071716:T:C	rs73074963	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr3	43071770	43071771	chr3:43071771:C:T	rs7610687	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	43085082	43085083	chr3:43085083:G:T	rs12485530	G	T	t	Sox1_MA0870.1	25	0	+	0	0	.
chr3	43170975	43170976	chr3:43170976:C:T	rs570155730	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr3	43364905	43364906	chr3:43364906:G:A	rs150764868	G	A	g	Sox1_MA0870.1	29	0	+	0	0	.
chr3	43533869	43533870	chr3:43533870:T:C	rs17075780	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	43542617	43542618	chr3:43542618:C:T	rs6809134	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr3	43692839	43692840	chr3:43692840:G:A	rs12490378	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	43890537	43890538	chr3:43890538:G:T	rs57154335	G	T	G	Sox1_MA0870.1	33	0	-	0	0	.
chr3	44182539	44182540	chr3:44182540:A:G	rs6441824	A	G	G	Sox1_MA0870.1	29	0	-	0	0	.
chr3	44544179	44544180	chr3:44544180:C:G	rs7625596	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	44762436	44762437	chr3:44762437:T:A	rs150361082	T	A	T	Sox1_MA0870.1	33	0	-	0	0	.
chr3	44999014	44999015	chr3:44999015:G:A	rs4683018	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr3	45112215	45112216	chr3:45112216:G:A	rs35501071	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr3	45507850	45507851	chr3:45507851:G:A	rs144623042	G	A	G	Sox1_MA0870.1	2	1	-	6.465810518246365	-0.44294426106885676	TACACAATCATTGTA
chr3	45654172	45654173	chr3:45654173:C:G	rs114281551	C	G	C	Sox1_MA0870.1	32	0	-	0	0	.
chr3	45678152	45678153	chr3:45678153:G:T	rs6441927	G	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr3	45875525	45875526	chr3:45875526:C:T	rs74426244	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr3	45897446	45897447	chr3:45897447:G:A	rs2236938	G	A	G	Sox1_MA0870.1	2	1	-	6.213454094440804	-0.6953006848744171	GACAAGGACATTGTG
chr3	45953743	45953744	chr3:45953744:C:T	rs9824253	C	T	C	Sox1_MA0870.1	13	1	+	4.02706083818586	6.204716135636854	TAAAATACCAGTGCT
chr3	45987965	45987966	chr3:45987966:G:C	rs1873000	G	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	46049064	46049065	chr3:46049065:A:G	rs7642229	A	G	G	Sox1_MA0870.1	5	1	-	3.779507021808372	-3.1236577368393883	TACAGTGACATTGCC
chr3	46162974	46162975	chr3:46162975:A:G	rs41366344	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	46206893	46206894	chr3:46206894:T:C	rs3176824	T	C	C	Sox1_MA0870.1	6	1	-	6.242430391539879	4.7038236983991615	GACACTAGCAGTGGA
chr3	46269429	46269430	chr3:46269430:T:C	rs4413345	T	C	C	Sox1_MA0870.1	0	1	-	6.670753357264905	5.328630214458153	AACAAGAGCAGTGTC
chr3	46370348	46370349	chr3:46370349:G:T	rs2734648	G	T	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	46443007	46443008	chr3:46443008:C:A	rs6441992	C	A	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	46458873	46458874	chr3:46458874:A:C	rs115230523	A	C	A	Sox1_MA0870.1	11	1	-	3.12100963536587	-3.7817230514909626	AACAGTACCAGTGGC
chr3	46673217	46673218	chr3:46673218:C:G	rs12487651	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr3	46743640	46743641	chr3:46743641:G:A	rs4075011	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr3	46865501	46865502	chr3:46865502:G:A	rs773937593	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	47315235	47315236	chr3:47315236:C:G	rs145745253	C	G	c	Sox1_MA0870.1	10	1	-	7.176363618083403	2.60879146251063	AACAATTCCAGGGTT
chr3	47413928	47413929	chr3:47413929:G:A	rs112830289	G	A	G	Sox1_MA0870.1	12	1	+	7.248802698636265	0.34004791932104383	GACAATGGCAGCGTT
chr3	48432838	48432839	chr3:48432839:G:A	rs2279077	G	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	49647639	49647640	chr3:49647640:G:A	rs2329020	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	50040787	50040788	chr3:50040788:T:C	rs7430334	T	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	50057675	50057676	chr3:50057676:T:C	rs7636203	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr3	50468625	50468626	chr3:50468626:C:T	rs113044297	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr3	50639450	50639451	chr3:50639451:T:C	chr3:50639451:T:C	T	C	T	Sox1_MA0870.1	3	1	-	5.366647452675776	-1.5339422145214496	GACAATGTCATCGCA
chr3	50676031	50676032	chr3:50676032:A:C	rs193132573	A	C	A	Sox1_MA0870.1	20	0	-	0	0	.
chr3	50725602	50725603	chr3:50725603:A:C	rs7652715	A	C	A	Sox1_MA0870.1	22	0	-	0	0	.
chr3	50745933	50745934	chr3:50745934:T:C	rs60552386	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr3	50989324	50989325	chr3:50989325:G:A	chr3:50989325:G:A	G	A	G	Sox1_MA0870.1	12	1	+	6.7684434541554666	-0.14031132515975375	AACACTGAGATTGCC
chr3	51244232	51244233	chr3:51244233:A:G	rs9809209	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr3	51311276	51311277	chr3:51311277:A:G	rs548138086	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	51370619	51370620	chr3:51370620:C:T	rs1552074	C	T	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	51422558	51422559	chr3:51422559:G:A	rs62257541	G	A	G	Sox1_MA0870.1	12	1	+	7.271359342918075	0.36260456360285465	AGCACTACCAGTGTG
chr3	51582317	51582318	chr3:51582318:T:C	rs6806509	T	C	T	Sox1_MA0870.1	3	1	-	3.859560963191157	-3.041028704006067	AACAAAGGCTTTGTT
chr3	52091376	52091377	chr3:52091377:T:C	rs12493204	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr3	52144539	52144540	chr3:52144540:G:A	rs148576317	G	A	G	Sox1_MA0870.1	8	1	-	6.522594452188928	2.3409849055516463	GACAATGACACTGTC
chr3	52194133	52194134	chr3:52194134:A:T	rs411457	A	T	A	Sox1_MA0870.1	18	0	+	0	0	.
chr3	52852588	52852589	chr3:52852589:T:C	rs2276825	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	53358635	53358636	chr3:53358636:C:T	rs9942027	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr3	53578790	53578791	chr3:53578791:T:C	rs807199	T	C	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	53703179	53703180	chr3:53703180:A:G	rs116031253	A	G	A	Sox1_MA0870.1	11	1	-	5.206519202070845	0.25112421626051085	TCCAATAACACTGTT
chr3	53799370	53799371	chr3:53799371:A:G	rs3796348	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr3	53823622	53823623	chr3:53823623:C:T	rs759532293	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr3	53838987	53838988	chr3:53838988:G:T	rs62250939	G	T	G	Sox1_MA0870.1	18	0	+	0	0	.
chr3	54226071	54226072	chr3:54226072:C:T	rs193269972	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	54902643	54902644	chr3:54902644:G:A	rs17319204	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	54902661	54902662	chr3:54902662:T:G	rs17054529	T	G	T	Sox1_MA0870.1	10	1	+	7.989954561044014	5.748829632480453	ATCCATTGCATTGTT
chr3	55007695	55007696	chr3:55007696:G:T	rs2280187	G	T	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	55166823	55166824	chr3:55166824:G:A	rs115289696	G	A	G	Sox1_MA0870.1	7	1	-	9.542642979333607	9.530813926785234	AACATTTCCATTGTT
chr3	55166839	55166840	chr3:55166840:G:A	rs35729033	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	55629564	55629565	chr3:55629565:T:C	rs358917	T	C	T	Sox1_MA0870.1	11	1	+	3.8113357455307195	-1.1440592402796148	AACACCTACATTGCA
chr3	56106422	56106423	chr3:56106423:G:A	rs9855836	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	56220641	56220642	chr3:56220642:A:G	rs73080543	A	G	A	Sox1_MA0870.1	11	1	-	7.226194610450794	2.270799624640461	GACAATTGCAGTGGA
chr3	56373676	56373677	chr3:56373677:G:A	rs11711928	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	56742879	56742880	chr3:56742880:T:C	rs4681794	T	C	t	Sox1_MA0870.1	0	1	-	4.876501036736061	3.5343778939293085	AAGAATATGATTGTG
chr3	56783726	56783727	chr3:56783727:G:A	rs1176353324	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr3	56788288	56788289	chr3:56788289:A:G	rs11712455	A	G	A	Sox1_MA0870.1	10	1	-	5.499748568400351	-1.3089485157359828	GGCAATTTCATTGGG
chr3	56825690	56825691	chr3:56825691:C:T	rs58823518	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	56825720	56825721	chr3:56825721:C:T	rs115009289	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr3	56856908	56856909	chr3:56856909:T:G	rs114823668	T	G	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	56885481	56885482	chr3:56885482:C:A	rs55949100	C	A	C	Sox1_MA0870.1	26	0	-	0	0	.
chr3	56929970	56929971	chr3:56929971:G:A	rs7621108	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	56985475	56985476	chr3:56985476:T:G	rs116496086	T	G	T	Sox1_MA0870.1	5	1	+	5.1023316988512875	-1.8008330597964735	CAGAATAGCATTGCA
chr3	57036127	57036128	chr3:57036128:C:A	rs1010338	C	A	A	Sox1_MA0870.1	30	0	+	0	0	.
chr3	57100361	57100362	chr3:57100362:C:T	rs77220427	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr3	57100382	57100383	chr3:57100383:A:G	rs1056554049	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	57142308	57142309	chr3:57142309:T:G	rs146435174	T	G	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	57385566	57385567	chr3:57385567:C:T	rs942623074	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr3	57800929	57800930	chr3:57800930:A:G	rs266842	A	G	A	Sox1_MA0870.1	4	1	+	5.332152128962801	-1.4454261252073892	GACAATGCCATGGCT
chr3	57892230	57892231	chr3:57892231:T:C	rs4273341	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr3	58249469	58249470	chr3:58249470:C:G	rs7650424	C	G	C	Sox1_MA0870.1	21	0	+	0	0	.
chr3	58296660	58296661	chr3:58296661:T:C	rs59981877	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr3	58334094	58334095	chr3:58334095:C:G	rs575857844	C	G	C	Sox1_MA0870.1	28	0	+	0	0	.
chr3	58388805	58388806	chr3:58388806:A:T	rs56288363	A	T	A	Sox1_MA0870.1	5	1	-	5.004456302999326	-0.0146737103112079	AACAATATCATTTGG
chr3	58392478	58392479	chr3:58392479:C:T	rs55797456	C	T	c	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	58419703	58419704	chr3:58419704:A:G	rs11714807	A	G	G	Sox1_MA0870.1	14	1	-	6.002110099331789	4.491100694850385	CTCAGTACCATTGTT
chr3	58423335	58423336	chr3:58423336:T:C	rs12631656	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr3	58574315	58574316	chr3:58574316:G:T	rs6776877	G	T	G	Sox1_MA0870.1	31	0	+	0	0	.
chr3	58639022	58639023	chr3:58639023:G:A	rs76288074	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr3	58639042	58639043	chr3:58639043:A:G	rs731608	A	G	a	Sox1_MA0870.1	10	1	-	3.8036620937588044	-3.005034990377529	AACAGAAGCATTGTG
chr3	58669733	58669734	chr3:58669734:C:A	rs59993219	C	A	-	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	58841205	58841206	chr3:58841206:T:C	rs17059879	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr3	59331621	59331622	chr3:59331622:A:T	rs12489630	A	T	A	Sox1_MA0870.1	28	0	+	0	0	.
chr3	59381569	59381570	chr3:59381570:A:G	rs7372490	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr3	59772433	59772434	chr3:59772434:T:C	rs56348548	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	59886025	59886026	chr3:59886026:T:C	rs73100670	T	C	T	Sox1_MA0870.1	5	1	+	4.629929145555463	-2.2732356130922957	CACCATTCCATTGGG
chr3	59917074	59917075	chr3:59917075:C:T	rs1825630	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr3	59984505	59984506	chr3:59984506:T:C	rs11130742	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	60087426	60087427	chr3:60087427:T:C	rs7635362	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr3	60153914	60153915	chr3:60153915:C:T	rs7642732	C	T	T	Sox1_MA0870.1	7	1	-	8.554788102602132	8.951766430398639	AACAAAAGCAGTGTC
chr3	60182120	60182121	chr3:60182121:C:T	rs73097590	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr3	60487236	60487237	chr3:60487237:C:G	rs2362894	C	G	C	Sox1_MA0870.1	31	0	+	0	0	.
chr3	60513153	60513154	chr3:60513154:G:T	rs2611403	G	T	T	Sox1_MA0870.1	22	0	-	0	0	.
chr3	60555592	60555593	chr3:60555593:C:T	chr3:60555593:C:T	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	60594288	60594289	chr3:60594289:C:T	rs939495	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	60948076	60948077	chr3:60948077:G:A	rs1562524	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr3	61152476	61152477	chr3:61152477:T:A	rs6787511	T	A	A	Sox1_MA0870.1	31	0	+	0	0	.
chr3	61199977	61199978	chr3:61199978:G:C	rs11130821	G	C	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	61378413	61378414	chr3:61378414:A:G	rs72883298	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr3	61449242	61449243	chr3:61449243:G:C	rs12637169	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	61467494	61467495	chr3:61467495:G:A	rs12152314	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr3	61519110	61519111	chr3:61519111:G:A	rs35581372	G	A	G	Sox1_MA0870.1	12	1	+	7.061989951973167	0.15323517265794662	ATCCATAGCATTGTA
chr3	61581088	61581089	chr3:61581089:C:T	rs115811120	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	61718840	61718841	chr3:61718841:G:A	rs685896	G	A	A	Sox1_MA0870.1	15	0	-	0	0	.
chr3	61744013	61744014	chr3:61744014:G:A	rs1718704	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr3	61872230	61872231	chr3:61872231:G:C	rs600368	G	C	g	Sox1_MA0870.1	26	0	+	0	0	.
chr3	61948917	61948918	chr3:61948918:T:C	rs1048222638	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	62110972	62110973	chr3:62110973:G:T	chr3:62110973:G:T	G	T	G	Sox1_MA0870.1	21	0	-	0	0	.
chr3	62125733	62125734	chr3:62125734:G:T	rs17683922	G	T	G	Sox1_MA0870.1	20	0	+	0	0	.
chr3	62281123	62281124	chr3:62281124:C:T	rs9824098	C	T	T	Sox1_MA0870.1	8	1	+	5.643289418535838	1.4616798718985562	AAAACTTACAGTGTT
chr3	62538974	62538975	chr3:62538975:A:G	rs17066545	A	G	A	Sox1_MA0870.1	1	1	+	9.399637401640202	5.301346746247061	AACAATTTCATTTTT
chr3	62558293	62558294	chr3:62558294:G:T	rs71296778	G	T	G	Sox1_MA0870.1	12	1	+	4.349104780239501	-2.5596499990757198	AACCATGCCAGTGCA
chr3	62832497	62832498	chr3:62832498:C:T	rs7640156	C	T	c	Sox1_MA0870.1	30	0	+	0	0	.
chr3	63370307	63370308	chr3:63370308:T:C	rs17068392	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	63451226	63451227	chr3:63451227:C:T	rs17068589	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr3	63532823	63532824	chr3:63532824:A:T	chr3:63532824:A:T	A	T	A	Sox1_MA0870.1	10	1	-	9.001488260897785	2.192791176761452	TACAATTTCATTGGG
chr3	63688154	63688155	chr3:63688155:G:A	rs56237394	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr3	63753942	63753943	chr3:63753943:T:C	rs34520803	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	63808871	63808872	chr3:63808872:C:G	rs6762506	C	G	C	Sox1_MA0870.1	25	0	+	0	0	.
chr3	63887274	63887275	chr3:63887275:A:G	rs79701772	A	G	A	Sox1_MA0870.1	11	1	-	6.593394989418136	1.638000003607802	AACAAAGCCAGTGTA
chr3	64047084	64047085	chr3:64047085:C:A	rs6769680	C	A	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	64160082	64160083	chr3:64160083:T:C	rs2306380	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr3	64223541	64223542	chr3:64223542:A:G	rs696236	A	G	A	Sox1_MA0870.1	14	1	-	8.478623563939948	6.9676141594585435	TAAAATAGCATTGTT
chr3	64355795	64355796	chr3:64355796:A:T	rs17070493	A	T	A	Sox1_MA0870.1	22	0	-	0	0	.
chr3	64575749	64575750	chr3:64575750:A:G	rs75372051	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	64929302	64929303	chr3:64929303:G:A	rs6806742	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	64972827	64972828	chr3:64972828:T:C	rs35301373	T	C	T	Sox1_MA0870.1	10	1	+	6.2009189084623575	-0.6077781756739763	CTCACTTACATTGCA
chr3	65071262	65071263	chr3:65071263:G:A	rs531928385	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr3	65071275	65071276	chr3:65071276:T:G	rs9637475	T	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr3	65230598	65230599	chr3:65230599:G:C	rs12488533	G	C	G	Sox1_MA0870.1	13	1	-	3.795193471816962	2.3303010426308837	CACAATTGCAGAGCT
chr3	65230598	65230599	chr3:65230599:G:T	chr3:65230599:G:T	G	T	G	Sox1_MA0870.1	13	1	-	3.795193471816962	2.6273227426787975	CACAATTGCAGAGCT
chr3	65230695	65230696	chr3:65230696:C:G	rs143192638	C	G	C	Sox1_MA0870.1	1	1	-	5.583230262905566	5.9123805334542086	TGCACTGCCATTGCT
chr3	65418939	65418940	chr3:65418940:T:C	rs4688233	T	C	C	Sox1_MA0870.1	6	1	-	7.2527945172302095	5.71418782408949	CACAAGACCATTGTA
chr3	65816311	65816312	chr3:65816312:T:G	rs1473530	T	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr3	65964227	65964228	chr3:65964228:C:A	rs117603829	C	A	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	66390453	66390454	chr3:66390454:G:C	rs74856151	G	C	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	66415455	66415456	chr3:66415456:T:C	rs191549065	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr3	66442027	66442028	chr3:66442028:C:T	rs9882524	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr3	66503651	66503652	chr3:66503652:G:C	rs9819120	G	C	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	66516783	66516784	chr3:66516784:T:C	rs7646790	T	C	T	Sox1_MA0870.1	10	1	+	12.214788921306377	5.406091837170044	GCCAATAGCATTGTT
chr3	66999609	66999610	chr3:66999610:A:G	rs11920665	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	67077958	67077959	chr3:67077959:T:C	rs9682687	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	67404493	67404494	chr3:67404494:T:C	rs4450832	T	C	T	Sox1_MA0870.1	3	1	-	4.930667358211988	-1.9699223089852365	CTCAATTGCTTTGTT
chr3	67461248	67461249	chr3:67461249:C:A	rs189268887	C	A	c	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	67599608	67599609	chr3:67599609:C:T	rs6794091	C	T	T	Sox1_MA0870.1	28	0	-	0	0	.
chr3	67599651	67599652	chr3:67599652:G:A	rs6768909	G	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	67640201	67640202	chr3:67640202:T:C	rs1450345	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	67901882	67901883	chr3:67901883:C:T	rs1868185	C	T	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	68551336	68551337	chr3:68551337:C:T	rs1398065	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	68793941	68793942	chr3:68793942:G:A	rs75317837	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	69033639	69033640	chr3:69033640:G:C	chr3:69033640:G:C	G	C	G	Sox1_MA0870.1	8	1	-	8.212449893119343	4.441946900219006	AACAAGACCATTGCT
chr3	69248779	69248780	chr3:69248780:T:C	rs9842313	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	69256309	69256310	chr3:69256310:T:C	rs7619612	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr3	69274167	69274168	chr3:69274168:G:A	rs35547879	G	A	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	69274179	69274180	chr3:69274180:A:G	rs1564755	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	69406469	69406470	chr3:69406470:T:C	rs9829137	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	69469715	69469716	chr3:69469716:A:G	rs55976743	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr3	69532844	69532845	chr3:69532845:G:A	rs17006072	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr3	69535881	69535882	chr3:69535882:T:C	rs7644318	T	C	C	Sox1_MA0870.1	9	1	-	6.7010356790506975	-0.2077191002645239	AAGAATGGCATTGCT
chr3	69649179	69649180	chr3:69649180:C:G	rs114475955	C	G	C	Sox1_MA0870.1	15	0	+	0	0	.
chr3	69683128	69683129	chr3:69683129:C:T	rs2114659	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr3	69683287	69683288	chr3:69683288:G:A	rs13090155	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	69889885	69889886	chr3:69889886:G:A	rs115174997	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr3	69970471	69970472	chr3:69970472:T:A	rs1491688	T	A	T	Sox1_MA0870.1	21	0	+	0	0	.
chr3	69998044	69998045	chr3:69998045:C:T	rs143471157	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr3	70108379	70108380	chr3:70108380:C:A	rs60995599	C	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr3	70249446	70249447	chr3:70249447:A:C	rs72943324	A	C	A	Sox1_MA0870.1	26	0	+	0	0	.
chr3	70727769	70727770	chr3:70727770:G:A	rs6549353	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	70910286	70910287	chr3:70910287:G:A	rs9837992	G	A	g	Sox1_MA0870.1	21	0	-	0	0	.
chr3	70935907	70935908	chr3:70935908:C:A	rs11928769	C	A	C	Sox1_MA0870.1	15	0	+	0	0	.
chr3	71131996	71131997	chr3:71131997:G:C	rs566353958	G	C	G	Sox1_MA0870.1	2	1	-	4.031864427650921	-2.8768903516643007	AACATTTGCATTGGA
chr3	71213022	71213023	chr3:71213023:C:T	rs73108264	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	71227983	71227984	chr3:71227984:T:C	rs2686275	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	71309733	71309734	chr3:71309734:C:A	rs557117932	C	A	C	Sox1_MA0870.1	15	0	-	0	0	.
chr3	71414747	71414748	chr3:71414748:A:G	rs35956082	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr3	71452743	71452744	chr3:71452744:G:A	rs2135548	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	71611420	71611421	chr3:71611421:G:A	rs1717281	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	71790250	71790251	chr3:71790251:G:A	rs1343839	G	A	G	Sox1_MA0870.1	0	1	+	5.477949177003497	6.820072319810249	GTCACTGTCATTGCC
chr3	71894366	71894367	chr3:71894367:T:C	rs74497608	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr3	71930719	71930720	chr3:71930720:G:A	rs534075491	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr3	72075898	72075899	chr3:72075899:T:C	rs67908047	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	72079947	72079948	chr3:72079948:C:G	rs9813856	C	G	C	Sox1_MA0870.1	8	1	-	6.476881756921044	10.247384749821382	GACACTGGGAGTGTT
chr3	72175596	72175597	chr3:72175597:C:T	rs11707718	C	T	c	Sox1_MA0870.1	30	0	+	0	0	.
chr3	72380336	72380337	chr3:72380337:G:A	rs1001959758	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	72380338	72380339	chr3:72380339:T:C	rs4676874	T	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	72380343	72380344	chr3:72380344:C:T	rs11922622	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	72466904	72466905	chr3:72466905:T:G	rs6549458	T	G	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	72961085	72961086	chr3:72961086:C:T	rs13080133	C	T	C	Sox1_MA0870.1	13	1	+	3.789171379358573	5.966826676809568	CATAATTGCAGTGCT
chr3	73075148	73075149	chr3:73075149:A:G	rs1388277	A	G	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	73121753	73121754	chr3:73121754:C:T	rs35226797	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr3	73339972	73339973	chr3:73339973:G:C	rs13079084	G	C	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	73351370	73351371	chr3:73351371:G:T	rs9861617	G	T	T	Sox1_MA0870.1	6	1	+	5.728679096503264	6.294237073929681	TGCAATGACAGTGCT
chr3	73557486	73557487	chr3:73557487:C:T	rs35594519	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr3	73730457	73730458	chr3:73730458:G:A	rs3845877	G	A	A	Sox1_MA0870.1	27	0	+	0	0	.
chr3	73787935	73787936	chr3:73787936:A:G	rs484332	A	G	G	Sox1_MA0870.1	25	0	-	0	0	.
chr3	73955707	73955708	chr3:73955708:A:G	rs76047382	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr3	74006225	74006226	chr3:74006226:C:T	rs13090225	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	74023091	74023092	chr3:74023092:A:G	rs2030875	A	G	G	Sox1_MA0870.1	0	1	+	3.879491024320642	2.5373678815138883	AACCTTGTCATTGTT
chr3	74253969	74253970	chr3:74253970:A:G	rs56397133	A	G	A	Sox1_MA0870.1	4	1	+	3.719818655381205	-3.0577595987889836	CCCAATGAGATTGCC
chr3	74302909	74302910	chr3:74302910:T:C	rs672784	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr3	74456663	74456664	chr3:74456664:T:G	rs6776512	T	G	G	Sox1_MA0870.1	4	1	+	5.804922486172803	5.804922486172803	AACATTTGGATTGTT
chr3	74751816	74751817	chr3:74751817:G:T	rs184422098	G	T	A	Sox1_MA0870.1	17	0	+	0	0	.
chr3	75022136	75022137	chr3:75022137:T:C	rs9857308	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr3	75350135	75350136	chr3:75350136:A:T	rs7613668	A	T	.	Sox1_MA0870.1	3	1	+	4.696269572043981	-0.8180257340333537	CTCACTTCCATTGGC
chr3	75672365	75672366	chr3:75672366:A:G	rs73126903	A	G	a	Sox1_MA0870.1	26	0	-	0	0	.
chr3	75778757	75778758	chr3:75778758:T:C	rs62269667	T	C	t	Sox1_MA0870.1	9	1	-	8.605134868952925	1.696380089637704	GACACTCCCATTGTT
chr3	76138767	76138768	chr3:76138768:T:G	rs7648349	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	76308773	76308774	chr3:76308774:T:C	rs138151664	T	C	T	Sox1_MA0870.1	5	1	-	5.453613799222856	3.569579053885631	AACAAAATCACTGTT
chr3	76381882	76381883	chr3:76381883:G:A	rs62262619	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr3	77042530	77042531	chr3:77042531:T:G	rs57050685	T	G	T	Sox1_MA0870.1	6	1	+	6.740483003568169	6.174925026141752	TACAATTAAATTGCT
chr3	77200726	77200727	chr3:77200727:A:T	rs1441963	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr3	77531273	77531274	chr3:77531274:A:T	rs775754	A	T	A	Sox1_MA0870.1	13	1	-	4.729963754073363	1.3844377274842041	GCCAATTACATTCTT
chr3	77586090	77586091	chr3:77586091:G:A	rs775740	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr3	77586105	77586106	chr3:77586106:C:T	rs77814403	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr3	77619600	77619601	chr3:77619601:G:A	rs77309736	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	77690566	77690567	chr3:77690567:A:G	rs1795443	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	77693257	77693258	chr3:77693258:G:A	rs776105	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr3	77836720	77836721	chr3:77836721:T:C	rs62254509	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr3	78004719	78004720	chr3:78004720:T:C	rs62256171	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr3	78093119	78093120	chr3:78093120:A:G	rs62256196	A	G	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	78158035	78158036	chr3:78158036:A:G	rs1917072	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr3	78286428	78286429	chr3:78286429:C:T	rs62254612	C	T	c	Sox1_MA0870.1	4	1	+	3.3224608000847953	-1.498304519460175	GCCACTACCATGGTT
chr3	78337776	78337777	chr3:78337777:A:G	rs55802591	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr3	78722545	78722546	chr3:78722546:T:C	rs2608023	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	78878980	78878981	chr3:78878981:G:A	rs141316999	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr3	79098429	79098430	chr3:79098430:T:C	rs74719498	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr3	79424623	79424624	chr3:79424624:C:T	rs4444671	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr3	79769680	79769681	chr3:79769681:A:C	rs12632490	A	C	A	Sox1_MA0870.1	11	1	-	3.7374969648440954	-3.1652357220127367	CACAATAGCAATGGA
chr3	80367000	80367001	chr3:80367001:C:T	rs188766889	C	T	A	Sox1_MA0870.1	17	0	-	0	0	.
chr3	81034167	81034168	chr3:81034168:G:C	rs2639266	G	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr3	81872777	81872778	chr3:81872778:A:G	rs9812141	A	G	a	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	82475032	82475033	chr3:82475033:T:C	rs73118693	T	C	C	Sox1_MA0870.1	1	1	-	4.096729335010174	-0.0015613203829695221	GACAATTTCAGGGTG
chr3	82475038	82475039	chr3:82475039:C:T	rs7624562	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	82475040	82475041	chr3:82475041:G:A	rs7624726	G	A	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	82498479	82498480	chr3:82498480:G:A	rs9854343	G	A	G	Sox1_MA0870.1	2	1	-	8.91987912791496	2.0111243485997403	CACAATCACATTGCT
chr3	82939418	82939419	chr3:82939419:T:C	rs6782805	T	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr3	83879327	83879328	chr3:83879328:G:A	rs12487517	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	84042613	84042614	chr3:84042614:A:T	rs113993869	A	T	A	Sox1_MA0870.1	19	0	-	0	0	.
chr3	84379164	84379165	chr3:84379165:C:A	rs9849282	C	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	85052016	85052017	chr3:85052017:A:G	rs9837914	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	85215115	85215116	chr3:85215116:G:A	rs13078384	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr3	85636236	85636237	chr3:85636237:C:T	rs75699990	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	85636257	85636258	chr3:85636258:C:T	rs11714008	C	T	T	Sox1_MA0870.1	8	1	+	4.688077830081173	0.5064682834438922	GACAATGACACTGAT
chr3	86215954	86215955	chr3:86215955:T:C	rs1949198	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr3	86378256	86378257	chr3:86378257:T:C	rs9820853	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	86868295	86868296	chr3:86868296:C:T	rs9842925	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr3	86942359	86942360	chr3:86942360:A:G	rs114455627	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	87133108	87133109	chr3:87133109:A:T	rs62257768	A	T	A	Sox1_MA0870.1	10	1	-	5.5065289194537	-1.3021681646826324	ACCAATGACATTCTT
chr3	87389771	87389772	chr3:87389772:G:C	rs1389673	G	C	C	Sox1_MA0870.1	8	1	-	9.399637401640202	5.629134408739866	AACAATTTCGTTGTT
chr3	87541717	87541718	chr3:87541718:T:A	rs9855058	T	A	T	Sox1_MA0870.1	21	0	-	0	0	.
chr3	87891579	87891580	chr3:87891580:A:G	rs17025121	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr3	87914635	87914636	chr3:87914636:C:T	rs13320429	C	T	C	Sox1_MA0870.1	2	1	+	10.227388453878252	3.3186336745630305	CACAATTCCATTGAC
chr3	88463051	88463052	chr3:88463052:A:G	rs10511137	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr3	88957392	88957393	chr3:88957393:C:A	rs62271103	C	A	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	89180671	89180672	chr3:89180672:T:C	rs55849666	T	C	T	Sox1_MA0870.1	5	1	+	5.773803656206658	-1.1293611024410999	AACAATTGGACTGTT
chr3	89186610	89186611	chr3:89186611:A:G	rs148704832	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	89246204	89246205	chr3:89246205:T:G	rs58341586	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	89535019	89535020	chr3:89535020:G:A	rs12637036	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	90549471	90549472	chr3:90549472:A:G	chr3:90549472:A:G	A	G	.	Sox1_MA0870.1	19	0	+	0	0	.
chr3	91876897	91876898	chr3:91876898:G:C	rs1158289737	G	C	.	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	93909609	93909610	chr3:93909610:A:T	rs8178626	A	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	94495308	94495309	chr3:94495309:T:C	rs4626098	T	C	.	Sox1_MA0870.1	-3	0	-	0	0	.
chr3	94507723	94507724	chr3:94507724:A:G	rs9813962	A	G	.	Sox1_MA0870.1	11	1	-	4.932842695613099	-0.022552290197235814	CTCACTAACAGTGCA
chr3	94614664	94614665	chr3:94614665:A:G	rs6772592	A	G	A	Sox1_MA0870.1	9	1	+	6.03812285737376	-0.8706319219414611	GACAAGGACATTGTA
chr3	94643749	94643750	chr3:94643750:G:A	rs75276955	G	A	g	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	94699583	94699584	chr3:94699584:A:C	rs116414672	A	C	A	Sox1_MA0870.1	25	0	+	0	0	.
chr3	94734641	94734642	chr3:94734642:G:A	rs16849463	G	A	A	Sox1_MA0870.1	7	1	+	4.250505996569656	4.647484324366163	CACAAAGGGATTGTC
chr3	95436474	95436475	chr3:95436475:G:A	rs13077166	G	A	A	Sox1_MA0870.1	15	0	-	0	0	.
chr3	95436481	95436482	chr3:95436482:G:A	rs13077169	G	A	G	Sox1_MA0870.1	8	1	-	4.796933269500315	0.6153237228630322	TAAAATAACATTGCA
chr3	95587617	95587618	chr3:95587618:C:G	rs34765840	C	G	c	Sox1_MA0870.1	33	0	+	0	0	.
chr3	95957591	95957592	chr3:95957592:A:G	rs1433243	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr3	96170165	96170166	chr3:96170166:A:G	rs9815430	A	G	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	96623162	96623163	chr3:96623163:G:C	rs60135182	G	C	g	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	97719259	97719260	chr3:97719260:A:G	rs556979190	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr3	97872683	97872684	chr3:97872684:A:G	rs186224760	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr3	98100182	98100183	chr3:98100183:G:A	rs61672522	G	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr3	98189870	98189871	chr3:98189871:T:G	rs137915854	T	G	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	98746881	98746882	chr3:98746882:T:G	rs828597	T	G	T	Sox1_MA0870.1	18	0	-	0	0	.
chr3	98783378	98783379	chr3:98783379:C:G	rs555456498	C	G	C	Sox1_MA0870.1	6	1	-	3.56378689075661	-0.2868054189358745	CACACAGTCAGTGTG
chr3	98790385	98790386	chr3:98790386:T:G	rs75317298	T	G	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	98801494	98801495	chr3:98801495:G:A	rs72934641	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	99250592	99250593	chr3:99250593:C:G	rs6807964	C	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr3	99412999	99413000	chr3:99413000:T:C	rs4365660	T	C	C	Sox1_MA0870.1	9	1	-	3.9083136794715534	-3.0004410998436666	CTCACTATCATGGTT
chr3	99419434	99419435	chr3:99419435:C:T	rs2623349	C	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr3	99523975	99523976	chr3:99523976:T:C	rs72620016	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr3	99846704	99846705	chr3:99846705:C:T	rs572909330	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	100105425	100105426	chr3:100105426:G:T	chr3:100105426:G:T	G	T	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr3	100227977	100227978	chr3:100227978:A:G	rs12492610	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr3	100256613	100256614	chr3:100256614:T:A	rs77760672	T	A	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	100641424	100641425	chr3:100641425:A:T	rs1520650	A	T	A	Sox1_MA0870.1	16	0	+	0	0	.
chr3	100991868	100991869	chr3:100991869:C:A	chr3:100991869:C:A	C	A	C	Sox1_MA0870.1	0	1	-	6.143167577563587	5.5466166146678795	GACAATCCCAGTGCT
chr3	100991869	100991870	chr3:100991870:C:T	rs34587221	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	101134269	101134270	chr3:101134270:A:T	rs9290314	A	T	A	Sox1_MA0870.1	6	1	+	5.12165704632023	4.14860833060593	AATAATAATATTGTC
chr3	101223188	101223189	chr3:101223189:A:T	rs511575	A	T	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	101465289	101465290	chr3:101465290:A:G	rs7653081	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	101562148	101562149	chr3:101562149:T:C	rs2303476	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	101562864	101562865	chr3:101562865:A:G	rs4257518	A	G	A	Sox1_MA0870.1	4	1	+	4.98977471204024	-1.7878035421299483	GGCAATTACAGTGCA
chr3	101677684	101677685	chr3:101677685:G:C	rs3806654	G	C	C	Sox1_MA0870.1	8	1	-	7.531907341735453	3.7614043488351157	CGCAATAACATTGAC
chr3	101900936	101900937	chr3:101900937:C:T	rs73865932	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr3	101903481	101903482	chr3:101903482:T:C	rs16844399	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr3	101935453	101935454	chr3:101935454:A:G	rs2951443	A	G	a	Sox1_MA0870.1	22	0	+	0	0	.
chr3	101944472	101944473	chr3:101944473:A:G	rs9881690	A	G	A	Sox1_MA0870.1	1	1	+	7.846528462092948	3.748237806699806	GACAATAACAATGTG
chr3	101944478	101944479	chr3:101944479:A:G	rs77371624	A	G	A	Sox1_MA0870.1	7	1	+	7.846528462092948	7.449550134296439	GACAATAACAATGTG
chr3	101977855	101977856	chr3:101977856:A:G	rs1019710148	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	102183662	102183663	chr3:102183663:G:T	rs79541358	G	T	G	Sox1_MA0870.1	27	0	-	0	0	.
chr3	102326447	102326448	chr3:102326448:A:G	rs73157497	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr3	102896663	102896664	chr3:102896664:A:G	rs708308	A	G	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	103611286	103611287	chr3:103611287:T:G	rs1511632	T	G	G	Sox1_MA0870.1	13	1	+	9.080243839708356	5.437696113071283	AACTATTCCATTGTG
chr3	104215008	104215009	chr3:104215009:G:A	rs13068337	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr3	104254975	104254976	chr3:104254976:G:A	rs2895274	G	A	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	104596719	104596720	chr3:104596720:C:T	rs60493715	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr3	104708329	104708330	chr3:104708330:G:T	rs2607959	G	T	G	Sox1_MA0870.1	29	0	-	0	0	.
chr3	104708345	104708346	chr3:104708346:C:T	rs62258446	C	T	C	Sox1_MA0870.1	13	1	-	5.835195148662553	6.132216848710467	GACAAGAACATTGGT
chr3	104920551	104920552	chr3:104920552:C:T	rs9844761	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr3	104957761	104957762	chr3:104957762:A:G	rs7618202	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr3	105174139	105174140	chr3:105174140:A:G	rs16850936	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr3	105293614	105293615	chr3:105293615:A:G	rs9816378	A	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	105334215	105334216	chr3:105334216:G:A	rs6797259	G	A	A	Sox1_MA0870.1	7	1	-	3.9064091605112234	3.89458010796285	AACAAATCCAGTGGC
chr3	105540016	105540017	chr3:105540017:A:G	rs1044240	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr3	105723045	105723046	chr3:105723046:A:G	rs3772525	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr3	105746863	105746864	chr3:105746864:T:C	rs148156634	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	105800471	105800472	chr3:105800472:G:A	rs2120103	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr3	105826018	105826019	chr3:105826019:C:T	rs1992522	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	106126144	106126145	chr3:106126145:C:T	rs6802299	C	T	C	Sox1_MA0870.1	7	1	-	4.405669748178511	4.802648075975017	AACAATAGGAGTTTT
chr3	106338887	106338888	chr3:106338888:T:A	rs6788146	T	A	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	106391036	106391037	chr3:106391037:C:A	rs12494088	C	A	C	Sox1_MA0870.1	12	1	-	6.366848301552178	-0.541906477763043	AACAAAACTATTGTG
chr3	106457161	106457162	chr3:106457162:G:C	rs73859310	G	C	G	Sox1_MA0870.1	20	0	-	0	0	.
chr3	106630031	106630032	chr3:106630032:T:A	rs9821012	T	A	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	106829111	106829112	chr3:106829112:G:C	rs9829110	G	C	g	Sox1_MA0870.1	22	0	-	0	0	.
chr3	106844736	106844737	chr3:106844737:A:G	rs2682519	A	G	a	Sox1_MA0870.1	34	0	-	0	0	.
chr3	107098351	107098352	chr3:107098352:G:A	rs6773438	G	A	G	Sox1_MA0870.1	6	1	+	4.7295790736087024	6.268185766749421	TAGAATGCCATTGCT
chr3	107198735	107198736	chr3:107198736:C:A	rs73211626	C	A	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	107198737	107198738	chr3:107198738:A:G	rs375688955	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	107375768	107375769	chr3:107375769:C:T	rs709563	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	107893150	107893151	chr3:107893151:G:T	rs190371971	G	T	G	Sox1_MA0870.1	13	1	-	4.759662705469713	3.591791976331549	GTCACTGCCAGTGCT
chr3	107893173	107893174	chr3:107893174:G:T	rs184151674	G	T	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr3	108018440	108018441	chr3:108018441:C:T	rs1344878	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr3	108029076	108029077	chr3:108029077:G:T	rs34709920	G	T	G	Sox1_MA0870.1	7	1	-	6.022864539075861	6.452625366611901	GACATTTCCATTGCT
chr3	108223753	108223754	chr3:108223754:G:T	rs9838839	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	108346726	108346727	chr3:108346727:T:C	rs35672602	T	C	T	Sox1_MA0870.1	10	1	+	6.109682919683522	-0.6990141644528122	TACACATACATTGTG
chr3	108487315	108487316	chr3:108487316:A:C	rs62268051	A	C	A	Sox1_MA0870.1	17	0	-	0	0	.
chr3	108734015	108734016	chr3:108734016:T:C	rs17288713	T	C	T	Sox1_MA0870.1	10	1	+	4.532855026092232	-2.275842058044103	CACACTTGGATTGAC
chr3	108872932	108872933	chr3:108872933:G:A	rs6790638	G	A	G	Sox1_MA0870.1	1	1	+	4.638387739773669	8.736678395166809	AGCAATAACACTGCT
chr3	108975192	108975193	chr3:108975193:G:A	rs2922138	G	A	A	Sox1_MA0870.1	34	0	+	0	0	.
chr3	109161543	109161544	chr3:109161544:C:T	rs1356074	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr3	109319787	109319788	chr3:109319788:T:G	rs1967025	T	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr3	109334086	109334087	chr3:109334087:G:A	rs7642495	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr3	110485425	110485426	chr3:110485426:C:T	rs11721302	C	T	C	Sox1_MA0870.1	2	1	+	5.260457517387966	-1.6482972619272531	CTCACATACATTGTT
chr3	110492794	110492795	chr3:110492795:A:G	rs77957848	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr3	110528413	110528414	chr3:110528414:G:A	rs1398409	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr3	111074058	111074059	chr3:111074059:G:A	rs2399372	G	A	A	Sox1_MA0870.1	8	1	-	6.583331497160136	2.4017219505228544	TACAAAACCAGTGTC
chr3	111210243	111210244	chr3:111210244:A:G	rs57976070	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	111237058	111237059	chr3:111237059:G:A	rs36019095	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	111237096	111237097	chr3:111237097:C:T	rs62273847	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr3	111277523	111277524	chr3:111277524:A:T	rs115225033	A	T	A	Sox1_MA0870.1	26	0	+	0	0	.
chr3	111285269	111285270	chr3:111285270:A:G	rs13083624	A	G	G	Sox1_MA0870.1	31	0	-	0	0	.
chr3	111312044	111312045	chr3:111312045:A:G	rs79844292	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	111518932	111518933	chr3:111518933:A:C	rs17202754	A	C	A	Sox1_MA0870.1	18	0	+	0	0	.
chr3	111546578	111546579	chr3:111546579:T:C	rs62273542	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr3	111607690	111607691	chr3:111607691:G:A	rs13086157	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr3	111619488	111619489	chr3:111619489:A:G	rs6780729	A	G	A	Sox1_MA0870.1	9	1	+	4.7258644554953415	-2.18289032381988	AACATTTACATTGAA
chr3	111696107	111696108	chr3:111696108:G:A	rs73214109	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr3	111764745	111764746	chr3:111764746:G:A	rs777816299	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	111765527	111765528	chr3:111765528:G:A	rs62273780	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	111835577	111835578	chr3:111835578:C:T	rs60787620	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	111835578	111835579	chr3:111835579:G:A	rs10804493	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	111851282	111851283	chr3:111851283:A:C	rs1282975	A	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr3	111903884	111903885	chr3:111903885:G:T	rs12495997	G	T	g	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	112037516	112037517	chr3:112037517:G:T	rs9862414	G	T	T	Sox1_MA0870.1	8	1	-	4.940706294759445	-0.952463359558768	GAAACTAGCATTGCT
chr3	112333985	112333986	chr3:112333986:G:A	rs73856005	G	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	112362537	112362538	chr3:112362538:G:A	rs112007507	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr3	112487278	112487279	chr3:112487279:T:C	rs4682411	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr3	112561148	112561149	chr3:112561149:T:A	rs2705505	T	A	T	Sox1_MA0870.1	20	0	+	0	0	.
chr3	112579478	112579479	chr3:112579479:C:T	rs80049720	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr3	112579497	112579498	chr3:112579498:A:G	rs1472107	A	G	G	Sox1_MA0870.1	6	1	-	4.684440519495608	0.2682902323767067	CTCACTTTCATTGGC
chr3	112633100	112633101	chr3:112633101:T:C	rs16859875	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	112794634	112794635	chr3:112794635:A:G	rs10934187	A	G	a	Sox1_MA0870.1	27	0	+	0	0	.
chr3	112857024	112857025	chr3:112857025:A:T	rs554470402	A	T	A	Sox1_MA0870.1	5	1	-	6.7010356790506975	1.6819056657401632	AAAAATGGCATTGCT
chr3	113219798	113219799	chr3:113219799:C:T	rs904627	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr3	113614506	113614507	chr3:113614507:G:A	rs3773686	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	113758839	113758840	chr3:113758840:G:T	chr3:113758840:G:T	G	T	G	Sox1_MA0870.1	12	1	+	5.943644115081954	-0.9651106642332667	AACACTTCCTTTGTC
chr3	113912798	113912799	chr3:113912799:A:T	rs77158440	A	T	a	Sox1_MA0870.1	3	1	+	8.486319738619313	2.972024432541977	GACACTATGATTGTG
chr3	114336338	114336339	chr3:114336339:C:T	rs11929619	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr3	114730416	114730417	chr3:114730417:G:A	rs9873528	G	A	G	Sox1_MA0870.1	14	1	-	3.837337622132313	5.348347026613718	GCCCATAACATTGCC
chr3	115232404	115232405	chr3:115232405:G:C	rs7613792	G	C	G	Sox1_MA0870.1	33	0	+	0	0	.
chr3	115674390	115674391	chr3:115674391:C:T	rs28399382	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	115692385	115692386	chr3:115692386:G:T	rs12497189	G	T	G	Sox1_MA0870.1	16	0	+	0	0	.
chr3	115804993	115804994	chr3:115804994:A:G	rs560999169	A	G	A	Sox1_MA0870.1	11	1	-	4.697567692728359	-0.25782729308197505	AACAAAAGCAGTGGG
chr3	116001714	116001715	chr3:116001715:C:A	chr3:116001715:C:A	C	A	C	Sox1_MA0870.1	19	0	+	0	0	.
chr3	117019109	117019110	chr3:117019110:G:C	rs746733111	G	C	G	Sox1_MA0870.1	33	0	+	0	0	.
chr3	117168576	117168577	chr3:117168577:C:T	rs9880688	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	117392787	117392788	chr3:117392788:T:C	rs1398629	T	C	T	Sox1_MA0870.1	10	1	+	4.492318467147543	-2.3163786169887897	ATCACTCCCATTGCT
chr3	117407718	117407719	chr3:117407719:C:T	rs4855946	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr3	117426694	117426695	chr3:117426695:C:T	rs78128364	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr3	117611407	117611408	chr3:117611408:C:T	rs1354147	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr3	117618730	117618731	chr3:117618731:T:C	rs1910041	T	C	C	Sox1_MA0870.1	23	0	+	0	0	.
chr3	117872508	117872509	chr3:117872509:A:G	rs7622841	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr3	118311827	118311828	chr3:118311828:G:C	rs779595	G	C	c	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	118884727	118884728	chr3:118884728:C:T	rs151282070	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr3	119258803	119258804	chr3:119258804:T:A	rs9837492	T	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr3	119544832	119544833	chr3:119544833:C:T	rs2228017	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr3	119775258	119775259	chr3:119775259:G:A	rs62264665	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	119937290	119937291	chr3:119937291:T:C	rs77881395	T	C	T	Sox1_MA0870.1	1	1	-	4.829643079044435	0.7313524236512942	CACAATTCCATTCAT
chr3	120180240	120180241	chr3:120180241:C:G	rs979684	C	G	C	Sox1_MA0870.1	8	1	+	6.373404942617997	2.6029019497176575	AACACTTACATTATC
chr3	120313899	120313900	chr3:120313900:C:T	rs191197813	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	120389311	120389312	chr3:120389312:T:C	rs79446786	T	C	t	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	120673623	120673624	chr3:120673624:T:G	rs4676817	T	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	120673656	120673657	chr3:120673657:G:C	rs4676818	G	C	G	Sox1_MA0870.1	26	0	+	0	0	.
chr3	120781217	120781218	chr3:120781218:C:T	rs17243695	C	T	c	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	120903397	120903398	chr3:120903398:C:T	rs2220255	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr3	121225368	121225369	chr3:121225369:G:A	rs16832180	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	121552459	121552460	chr3:121552460:G:T	rs1877969	G	T	G	Sox1_MA0870.1	12	1	+	4.488142410714187	-2.420612368601034	GACATTTACAGTGTA
chr3	121575006	121575007	chr3:121575007:T:C	rs66494182	T	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr3	121707807	121707808	chr3:121707808:A:G	rs11710169	A	G	A	Sox1_MA0870.1	10	1	-	6.382541690589679	-0.4261553935466551	AACTCTGCCATTGTA
chr3	121837371	121837372	chr3:121837372:C:T	rs9826473	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr3	121868889	121868890	chr3:121868890:A:T	rs9869891	A	T	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	121894206	121894207	chr3:121894207:C:T	rs10470412	C	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	122068113	122068114	chr3:122068114:C:A	rs972437852	C	A	C	Sox1_MA0870.1	26	0	-	0	0	.
chr3	122589303	122589304	chr3:122589304:G:A	rs11714010	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	122665459	122665460	chr3:122665460:A:G	rs59548082	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr3	122677339	122677340	chr3:122677340:A:T	rs2650958	A	T	T	Sox1_MA0870.1	26	0	+	0	0	.
chr3	122760839	122760840	chr3:122760840:T:C	rs1877379	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	122760876	122760877	chr3:122760877:C:T	rs57705896	C	T	T	Sox1_MA0870.1	20	0	+	0	0	.
chr3	122909029	122909030	chr3:122909030:G:C	rs113836293	G	C	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	122974745	122974746	chr3:122974746:A:G	chr3:122974746:A:G	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	123068665	123068666	chr3:123068666:A:T	rs7614797	A	T	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	123203960	123203961	chr3:123203961:G:A	rs1515371	G	A	A	Sox1_MA0870.1	15	0	-	0	0	.
chr3	123346127	123346128	chr3:123346128:C:G	rs55848018	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr3	123349511	123349512	chr3:123349512:G:A	rs4383453	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	123366250	123366251	chr3:123366251:G:A	rs6781704	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	123471883	123471884	chr3:123471884:C:T	rs35000036	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr3	123620490	123620491	chr3:123620491:C:A	rs820456	C	A	C	Sox1_MA0870.1	32	0	-	0	0	.
chr3	123620494	123620495	chr3:123620495:A:G	rs115869339	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr3	123620513	123620514	chr3:123620514:T:G	chr3:123620514:T:G	T	G	T	Sox1_MA0870.1	9	1	-	8.572533574418667	1.6637787951034468	CACACTGACAGTGCT
chr3	123620707	123620708	chr3:123620708:C:T	rs565233007	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr3	123949738	123949739	chr3:123949739:C:A	rs7619302	C	A	C	Sox1_MA0870.1	21	0	+	0	0	.
chr3	124142928	124142929	chr3:124142929:T:C	rs68048456	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	124169630	124169631	chr3:124169631:G:T	rs4677919	G	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	124229711	124229712	chr3:124229712:G:T	rs766541113	G	T	G	Sox1_MA0870.1	34	0	-	0	0	.
chr3	124261374	124261375	chr3:124261375:C:T	rs4677922	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr3	124261400	124261401	chr3:124261401:G:A	rs533527207	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	124261418	124261419	chr3:124261419:A:G	rs112124364	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	124263525	124263526	chr3:124263526:T:A	rs7638513	T	A	T	Sox1_MA0870.1	9	1	-	4.777740874566253	-2.1310139047489685	CACAATCACAGTGCA
chr3	124263553	124263554	chr3:124263554:A:C	rs115519367	A	C	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	124300954	124300955	chr3:124300955:C:T	rs11712619	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	124352391	124352392	chr3:124352392:T:G	rs6772915	T	G	G	Sox1_MA0870.1	1	1	-	4.721346901923382	0.9522065170788816	AACACTAACAGAGTA
chr3	124501034	124501035	chr3:124501035:A:G	rs1822996	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	124574035	124574036	chr3:124574036:G:T	rs2333024	G	T	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr3	124574036	124574037	chr3:124574037:T:G	rs2246776	T	G	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	124592488	124592489	chr3:124592489:T:C	rs13096370	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	124714702	124714703	chr3:124714703:G:A	rs893830	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	124723533	124723534	chr3:124723534:A:T	rs73197605	A	T	A	Sox1_MA0870.1	28	0	+	0	0	.
chr3	124760364	124760365	chr3:124760365:C:T	rs13087417	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	124760733	124760734	chr3:124760734:T:A	rs965063	T	A	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	124760861	124760862	chr3:124760862:G:T	rs74659236	G	T	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	124841961	124841962	chr3:124841962:G:T	rs61760569	G	T	G	Sox1_MA0870.1	8	1	-	5.06753966338662	-0.8256299909315951	TGCACTTACATTGCC
chr3	124885841	124885842	chr3:124885842:C:A	rs1007857	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	125046316	125046317	chr3:125046317:C:T	rs4679276	C	T	C	Sox1_MA0870.1	10	1	-	4.474860413482215	-0.0927117420905571	AGCAATAACAGTATT
chr3	125070610	125070611	chr3:125070611:G:A	rs72980471	G	A	G	Sox1_MA0870.1	1	1	-	4.889692697340273	5.381548835023633	ACAAATACCATTGTG
chr3	125148437	125148438	chr3:125148438:C:T	rs7625624	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr3	125161151	125161152	chr3:125161152:T:C	rs632682	T	C	C	Sox1_MA0870.1	1	1	-	3.913686330241692	-0.18460432515145053	AATGATAACATTGTT
chr3	125348731	125348732	chr3:125348732:C:T	rs56253895	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr3	125923392	125923393	chr3:125923393:A:G	rs4334595	A	G	.	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	125923445	125923446	chr3:125923446:T:C	rs111324805	T	C	.	Sox1_MA0870.1	33	0	+	0	0	.
chr3	125928642	125928643	chr3:125928643:A:T	rs1976459	A	T	.	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	126015621	126015622	chr3:126015622:G:A	rs9862310	G	A	A	Sox1_MA0870.1	10	1	+	5.459812961030121	0.8922408054573481	TACACTTACAGTGGC
chr3	126037451	126037452	chr3:126037452:C:G	rs2134520	C	G	G	Sox1_MA0870.1	12	1	-	4.2978288595580345	-2.610925919757187	CCCAATAACTTTGTC
chr3	126133627	126133628	chr3:126133628:T:C	rs2365001	T	C	C	Sox1_MA0870.1	14	1	+	5.282193237982424	3.7711838335010195	GACTATTCTATTGTT
chr3	126136755	126136756	chr3:126136756:G:T	rs2305229	G	T	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	126152606	126152607	chr3:126152607:G:A	rs4646713	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	126158153	126158154	chr3:126158154:T:C	rs149896878	T	C	T	Sox1_MA0870.1	11	1	+	8.297821518492242	3.342426532681909	AACACTGACAGTGCC
chr3	126204088	126204089	chr3:126204089:C:T	rs11709544	C	T	C	Sox1_MA0870.1	10	1	-	3.3377756634485953	-1.2297964921241777	CACAGTATCAGTGCC
chr3	126466097	126466098	chr3:126466098:C:T	rs1799389	C	T	C	Sox1_MA0870.1	4	1	-	3.0472953714112307	9.824873625581418	AACAGTGCCAGTGCC
chr3	126680315	126680316	chr3:126680316:C:T	rs11714100	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr3	126969011	126969012	chr3:126969012:A:G	rs76927976	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr3	127104595	127104596	chr3:127104596:T:A	rs17701673	T	A	T	Sox1_MA0870.1	14	1	+	7.401561802229228	5.50054847744408	AACACAAACATTGAT
chr3	127129596	127129597	chr3:127129597:G:A	rs13316446	G	A	G	Sox1_MA0870.1	7	1	+	5.02792635153109	5.424904679327599	TTCAATGGCATTGGA
chr3	127152286	127152287	chr3:127152287:T:A	rs13085523	T	A	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	127210244	127210245	chr3:127210245:C:T	rs11714341	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr3	127728625	127728626	chr3:127728626:C:T	rs114023838	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	128076002	128076003	chr3:128076003:C:T	rs189492114	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	128187484	128187485	chr3:128187485:G:T	rs11928904	G	T	G	Sox1_MA0870.1	34	0	-	0	0	.
chr3	128315691	128315692	chr3:128315692:T:G	rs6771646	T	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr3	128318699	128318700	chr3:128318700:G:T	rs113134458	G	T	G	Sox1_MA0870.1	32	0	+	0	0	.
chr3	128456697	128456698	chr3:128456698:G:A	rs77018539	G	A	G	Sox1_MA0870.1	11	1	-	5.867427383629197	10.822822369439532	AACAATCACATCGTC
chr3	128490638	128490639	chr3:128490639:C:G	rs2953120	C	G	C	Sox1_MA0870.1	21	0	-	0	0	.
chr3	128490666	128490667	chr3:128490667:G:A	rs573443023	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	128711065	128711066	chr3:128711066:C:T	rs73196954	C	T	C	Sox1_MA0870.1	8	1	+	4.230017431731071	0.048407885093787684	CACACTGTCAATGTC
chr3	129439191	129439192	chr3:129439192:G:A	rs114422006	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr3	129469481	129469482	chr3:129469482:G:A	rs7612530	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	129489468	129489469	chr3:129489469:G:A	rs4352374	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	129651895	129651896	chr3:129651896:A:G	rs77017646	A	G	A	Sox1_MA0870.1	4	1	-	3.554927957034589	8.37569327657956	ATCATTGGCATTGCT
chr3	129949940	129949941	chr3:129949941:G:A	rs907931	G	A	A	Sox1_MA0870.1	11	1	-	7.888790715751751	12.844185701562084	CACAATAACATCGGT
chr3	130109057	130109058	chr3:130109058:A:G	rs73210763	A	G	a	Sox1_MA0870.1	10	1	-	7.2029318216003	0.3942347374639662	AACAAAACCATTGAG
chr3	130533565	130533566	chr3:130533566:T:C	rs9283579	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr3	130759974	130759975	chr3:130759975:T:A	rs187742787	T	A	T	Sox1_MA0870.1	24	0	-	0	0	.
chr3	130759989	130759990	chr3:130759990:G:A	rs76580213	G	A	G	Sox1_MA0870.1	9	1	-	5.201699538451424	5.201699538451424	AACACTTTCCGTGTT
chr3	130893893	130893894	chr3:130893894:T:G	rs890417509	T	G	T	Sox1_MA0870.1	18	0	+	0	0	.
chr3	131715195	131715196	chr3:131715196:G:A	rs73220429	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	131797472	131797473	chr3:131797473:C:A	rs186798722	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	131812483	131812484	chr3:131812484:T:C	rs16837858	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	131866347	131866348	chr3:131866348:C:T	rs7621543	C	T	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	131898582	131898583	chr3:131898583:C:T	rs4854629	C	T	T	Sox1_MA0870.1	10	1	-	5.77867959374027	1.2111074381674958	AACATTTTCAGTGTC
chr3	131958336	131958337	chr3:131958337:A:G	rs2699850	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr3	132071740	132071741	chr3:132071741:C:T	rs11720820	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	132136521	132136522	chr3:132136522:G:A	rs61793334	G	A	C	Sox1_MA0870.1	0	1	+	3.7245311038196767	5.066654246626429	GTCACTGACAGTGGT
chr3	132265395	132265396	chr3:132265396:A:G	rs6766469	A	G	G	Sox1_MA0870.1	9	1	+	4.244170341592921	-2.6645844377223007	CCCACTTACATTGGA
chr3	132339610	132339611	chr3:132339611:T:C	rs55950941	T	C	C	Sox1_MA0870.1	4	1	-	4.804010684030858	-1.97356757013933	ACCAATAACTGTGTT
chr3	132339625	132339626	chr3:132339626:G:T	rs309997	G	T	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	132784770	132784771	chr3:132784771:A:G	rs79593292	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	132784772	132784773	chr3:132784773:A:G	rs144446939	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr3	132963884	132963885	chr3:132963885:A:C	rs60368871	A	C	C	Sox1_MA0870.1	3	1	+	9.088593909720814	4.002828984682639	AAGAATAACATTGTG
chr3	133137323	133137324	chr3:133137324:A:G	rs75135323	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	133160274	133160275	chr3:133160275:A:G	rs112358350	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	133237798	133237799	chr3:133237799:C:A	rs2370047	C	A	A	Sox1_MA0870.1	32	0	+	0	0	.
chr3	133292359	133292360	chr3:133292360:C:T	rs11922891	C	T	T	Sox1_MA0870.1	8	1	+	3.8348284887866475	-0.3467810578506342	TCCAGTTCCATTGTT
chr3	133302105	133302106	chr3:133302106:A:G	rs16840202	A	G	A	Sox1_MA0870.1	6	1	+	8.70235502991185	7.163748336771132	GCCACTATCATTGTC
chr3	133302123	133302124	chr3:133302124:A:T	rs4600815	A	T	A	Sox1_MA0870.1	24	0	+	0	0	.
chr3	133392742	133392743	chr3:133392743:G:A	rs1708377	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	133394773	133394774	chr3:133394774:T:C	chr3:133394774:T:C	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr3	133444479	133444480	chr3:133444480:A:G	rs78039258	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr3	133444497	133444498	chr3:133444498:C:T	rs72980102	C	T	C	Sox1_MA0870.1	6	1	-	5.698011253595347	7.2366179467360645	GACAACGACAGTGTT
chr3	133536535	133536536	chr3:133536536:G:A	rs73861138	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	133837500	133837501	chr3:133837501:T:C	rs9840108	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	133924157	133924158	chr3:133924158:T:C	rs9289459	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	133945170	133945171	chr3:133945171:T:C	rs150345667	T	C	T	Sox1_MA0870.1	10	1	+	3.3950405661090457	-3.4136565180272873	CTCGATTCCATTGTC
chr3	133976659	133976660	chr3:133976660:G:A	rs4854781	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	134147023	134147024	chr3:134147024:G:A	rs113752496	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	134375679	134375680	chr3:134375680:C:T	rs73861400	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr3	134382598	134382599	chr3:134382599:G:A	rs35304308	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	134494695	134494696	chr3:134494696:C:T	rs9871305	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr3	134645286	134645287	chr3:134645287:A:G	rs34701532	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	134645295	134645296	chr3:134645296:A:C	chr3:134645296:A:C	A	C	A	Sox1_MA0870.1	1	1	+	5.234663119295446	1.465522734450948	CACCCTGCCAGTGTT
chr3	134645319	134645320	chr3:134645320:C:G	rs76741183	C	G	C	Sox1_MA0870.1	25	0	+	0	0	.
chr3	135145686	135145687	chr3:135145687:G:A	rs3772647	G	A	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	135216810	135216811	chr3:135216811:A:G	rs34744364	A	G	g	Sox1_MA0870.1	0	1	+	6.2653587321724675	4.9232355893657145	ATCATTTCCATTGTT
chr3	135216830	135216831	chr3:135216831:T:C	rs28707535	T	C	c	Sox1_MA0870.1	20	0	+	0	0	.
chr3	135310552	135310553	chr3:135310553:T:G	rs115344190	T	G	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	135566343	135566344	chr3:135566344:G:A	rs35126997	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr3	135983802	135983803	chr3:135983803:C:T	rs6439605	C	T	T	Sox1_MA0870.1	22	0	-	0	0	.
chr3	136378733	136378734	chr3:136378734:T:C	rs655836	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr3	136933291	136933292	chr3:136933292:A:G	rs73231966	A	G	A	Sox1_MA0870.1	10	1	-	12.779688353501976	5.970991269365642	CTCAATACCATTGTT
chr3	137032511	137032512	chr3:137032512:G:A	rs1009879791	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	137066954	137066955	chr3:137066955:G:A	rs1023765	G	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr3	137511961	137511962	chr3:137511962:C:T	rs2344794	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	137785841	137785842	chr3:137785842:G:T	rs6764959	G	T	G	Sox1_MA0870.1	19	0	+	0	0	.
chr3	138333626	138333627	chr3:138333627:A:G	rs116161029	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr3	138443272	138443273	chr3:138443273:C:G	rs34078858	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	138594840	138594841	chr3:138594841:C:G	rs146560881	C	G	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	138594850	138594851	chr3:138594851:C:A	rs141206666	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	138689070	138689071	chr3:138689071:T:A	rs56189529	T	A	T	Sox1_MA0870.1	18	0	-	0	0	.
chr3	138923636	138923637	chr3:138923637:G:A	rs116165602	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	138923670	138923671	chr3:138923671:T:A	rs188373213	T	A	T	Sox1_MA0870.1	29	0	+	0	0	.
chr3	139309772	139309773	chr3:139309773:C:T	rs114099356	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr3	139320065	139320066	chr3:139320066:T:C	rs6439848	T	C	T	Sox1_MA0870.1	4	1	-	3.6491697125542655	-3.128408541615925	GGCCATTGCATTGCT
chr3	139434994	139434995	chr3:139434995:G:T	rs116398271	G	T	G	Sox1_MA0870.1	2	1	-	4.171556845440312	-2.737197933874908	GACCCTTTCAGTGTC
chr3	139435004	139435005	chr3:139435005:C:G	rs148799579	C	G	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	139532542	139532543	chr3:139532543:G:A	rs3772868	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr3	139539051	139539052	chr3:139539052:C:T	rs115059529	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr3	139639414	139639415	chr3:139639415:A:C	rs6439872	A	C	A	Sox1_MA0870.1	25	0	-	0	0	.
chr3	139745671	139745672	chr3:139745672:T:C	rs12486169	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	140339779	140339780	chr3:140339780:C:T	rs1479878	C	T	T	Sox1_MA0870.1	10	1	-	8.731313193558261	4.1637410379854884	CACTATAACAGTGTT
chr3	140339792	140339793	chr3:140339793:C:T	rs1479879	C	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr3	140446765	140446766	chr3:140446766:A:G	rs6439921	A	G	G	Sox1_MA0870.1	6	1	-	4.623520762770866	0.20737047565196443	GACAAATGCATTGGG
chr3	140540594	140540595	chr3:140540595:C:T	rs349551	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	140656302	140656303	chr3:140656303:A:G	rs837662	A	G	G	Sox1_MA0870.1	4	1	+	4.5192869034407295	-2.2582913507294595	CACAATTGCCTTGCC
chr3	140758985	140758986	chr3:140758986:A:G	rs9864302	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	141274868	141274869	chr3:141274869:T:C	rs11715472	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr3	141289280	141289281	chr3:141289281:A:G	rs1567558	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	141386727	141386728	chr3:141386728:A:G	rs724016	A	G	A	Sox1_MA0870.1	5	1	+	6.264644002494816	4.380609257157589	GACACATTCATTGTG
chr3	141474371	141474372	chr3:141474372:T:G	rs79911932	T	G	G	Sox1_MA0870.1	6	1	-	8.066969244402532	2.6777702415693296	CACAATAACATTTTC
chr3	142031967	142031968	chr3:142031968:A:G	rs1397764	A	G	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	142115941	142115942	chr3:142115942:C:T	rs62284574	C	T	T	Sox1_MA0870.1	2	1	+	6.047951799649513	-0.8608029796657062	GTCAATTATATTGTA
chr3	142147944	142147945	chr3:142147945:C:T	rs73236053	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	142540417	142540418	chr3:142540418:A:G	rs72996190	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	142613792	142613793	chr3:142613793:C:G	rs28709617	C	G	C	Sox1_MA0870.1	12	1	-	6.014038223121234	-0.894716556193987	AACAATCACAGTGCA
chr3	142650736	142650737	chr3:142650737:T:C	rs951417183	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr3	143012707	143012708	chr3:143012708:G:A	rs112578400	G	A	T	Sox1_MA0870.1	4	1	-	6.621928154917601	1.8011628353726294	AACACGAACAGTGTT
chr3	143127527	143127528	chr3:143127528:A:G	rs6794836	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	143135362	143135363	chr3:143135363:G:A	rs192493549	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	143151404	143151405	chr3:143151405:C:T	rs4683753	C	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	143190321	143190322	chr3:143190322:T:G	rs834910	T	G	G	Sox1_MA0870.1	7	1	-	5.795145984128384	5.3653851565923425	AATAAAAACATTGTT
chr3	143274278	143274279	chr3:143274279:C:T	rs111641784	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	143443816	143443817	chr3:143443817:T:C	rs55864696	T	C	C	Sox1_MA0870.1	26	0	-	0	0	.
chr3	143508459	143508460	chr3:143508460:G:A	rs79803693	G	A	G	Sox1_MA0870.1	6	1	+	4.759662705469713	6.298269398610433	GTCACTGCCAGTGCT
chr3	143736376	143736377	chr3:143736377:G:A	rs73154705	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr3	143993094	143993095	chr3:143993095:C:T	rs114891426	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	144037344	144037345	chr3:144037345:C:G	rs1025984	C	G	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	144263718	144263719	chr3:144263719:T:C	rs17670978	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr3	144385287	144385288	chr3:144385288:T:C	rs1725546	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr3	145002912	145002913	chr3:145002913:C:T	rs9875246	C	T	C	Sox1_MA0870.1	12	1	-	7.753133131986086	0.8443783526708651	AACCATGACATTGAT
chr3	145313893	145313894	chr3:145313894:C:A	rs6806923	C	A	C	Sox1_MA0870.1	19	0	+	0	0	.
chr3	145519286	145519287	chr3:145519287:G:T	rs58386509	G	T	G	Sox1_MA0870.1	22	0	-	0	0	.
chr3	145532361	145532362	chr3:145532362:C:T	rs2177286	C	T	A	Sox1_MA0870.1	9	1	+	6.238217885278292	6.238217885278292	AACACTATCCTTGCT
chr3	145533800	145533801	chr3:145533801:A:G	rs478955	A	G	A	Sox1_MA0870.1	14	1	+	6.6212778920211735	6.796609129088218	AACAAAAATATTGTA
chr3	145533820	145533821	chr3:145533821:G:A	chr3:145533821:G:A	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr3	145936557	145936558	chr3:145936558:G:A	rs34135782	G	A	A	Sox1_MA0870.1	4	1	-	5.593174281954878	0.7724089624099068	AACACTGACCTTGTG
chr3	146092223	146092224	chr3:146092224:A:C	rs3792340	A	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	146117721	146117722	chr3:146117722:T:G	rs6799720	T	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr3	146170705	146170706	chr3:146170706:G:T	rs4342076	G	T	T	Sox1_MA0870.1	19	0	+	0	0	.
chr3	146222495	146222496	chr3:146222496:C:G	rs2036980	C	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr3	146281043	146281044	chr3:146281044:T:C	chr3:146281044:T:C	T	C	T	Sox1_MA0870.1	10	1	+	7.820503662459647	1.0118065783233123	CACCATTCCATTGCT
chr3	146375397	146375398	chr3:146375398:C:T	rs74886715	C	T	C	Sox1_MA0870.1	9	1	+	5.685580693321494	5.685580693321494	CACACTGGCCTTGTT
chr3	146375421	146375422	chr3:146375422:C:T	rs113820024	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr3	146391566	146391567	chr3:146391567:A:G	rs13064298	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	146507061	146507062	chr3:146507062:A:G	rs76838671	A	G	A	Sox1_MA0870.1	3	1	+	9.35636841072524	2.455778743528018	TTCAATTACATTGCT
chr3	146550958	146550959	chr3:146550959:T:C	rs75173624	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr3	146559679	146559680	chr3:146559680:A:G	rs1876412	A	G	a	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	146646397	146646398	chr3:146646398:A:G	rs6799360	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr3	146681329	146681330	chr3:146681330:T:G	rs6804783	T	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	146894127	146894128	chr3:146894128:T:C	rs12633225	T	C	T	Sox1_MA0870.1	5	1	+	5.197000682062058	-1.706164076585702	AACAATGACATTTCA
chr3	146904005	146904006	chr3:146904006:C:T	rs62274287	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr3	146948732	146948733	chr3:146948733:G:A	rs4414816	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	147416244	147416245	chr3:147416245:A:G	rs9833875	A	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	147416251	147416252	chr3:147416252:A:G	rs12107172	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	147424935	147424936	chr3:147424936:A:G	rs10460853	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr3	148149547	148149548	chr3:148149548:C:T	rs75225963	C	T	C	Sox1_MA0870.1	14	1	-	7.131780975095598	6.956449738028554	AACACTAACTTTGTG
chr3	148191686	148191687	chr3:148191687:C:T	rs67709324	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	148333394	148333395	chr3:148333395:G:T	rs75399699	G	T	G	Sox1_MA0870.1	13	1	-	5.286539156543196	4.11866842740503	GACACAACCATTGCC
chr3	148607375	148607376	chr3:148607376:C:T	rs16860581	C	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr3	148624774	148624775	chr3:148624775:T:G	rs275692	T	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr3	148727205	148727206	chr3:148727206:T:C	rs12721331	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	148758349	148758350	chr3:148758350:G:C	rs16860856	G	C	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	148772493	148772494	chr3:148772494:C:T	rs2934114	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr3	148836771	148836772	chr3:148836772:T:C	rs3821497	T	C	T	Sox1_MA0870.1	5	1	+	4.096740164510367	-2.806424594137391	AGCAATATCCTTGCT
chr3	148861357	148861358	chr3:148861358:T:C	rs73160782	T	C	T	Sox1_MA0870.1	1	1	+	6.6903262949521025	6.198470157268744	ATCTATAACAGTGTT
chr3	148866499	148866500	chr3:148866500:G:A	rs80245122	G	A	g	Sox1_MA0870.1	17	0	+	0	0	.
chr3	148968853	148968854	chr3:148968854:C:A	rs6764975	C	A	C	Sox1_MA0870.1	19	0	+	0	0	.
chr3	149324229	149324230	chr3:149324230:G:A	rs115360733	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	149363179	149363180	chr3:149363180:A:G	rs59692980	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr3	149481804	149481805	chr3:149481805:T:G	rs13067320	T	G	T	Sox1_MA0870.1	6	1	+	5.433287225724432	4.867729248298015	AACATTTGCAGTGTA
chr3	149524005	149524006	chr3:149524006:T:C	rs719073	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr3	149540199	149540200	chr3:149540200:C:G	rs114457234	C	G	C	Sox1_MA0870.1	12	1	-	12.254713077850187	5.345958298534967	AGCAATTGCATTGTT
chr3	149589226	149589227	chr3:149589227:G:C	rs73868029	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	149812273	149812274	chr3:149812274:T:C	rs142569336	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr3	149977604	149977605	chr3:149977605:G:A	rs35233622	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	150069188	150069189	chr3:150069189:T:C	rs67300977	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	150105982	150105983	chr3:150105983:C:A	rs16862469	C	A	C	Sox1_MA0870.1	12	1	-	7.6673532022057245	0.7585984228905036	AGCAATGACAGTGCT
chr3	150169842	150169843	chr3:150169843:T:C	rs7636525	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr3	150171705	150171706	chr3:150171706:A:G	rs147482062	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	150371697	150371698	chr3:150371698:C:T	rs78213229	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr3	150378107	150378108	chr3:150378108:G:A	rs527307077	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	150775362	150775363	chr3:150775363:C:T	rs113444499	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	150887173	150887174	chr3:150887174:C:T	rs34741729	C	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr3	151217582	151217583	chr3:151217583:A:G	rs1554120	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	151295107	151295108	chr3:151295108:C:T	rs9819885	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	151441116	151441117	chr3:151441117:T:C	rs9866874	T	C	T	Sox1_MA0870.1	3	1	-	4.939174134912896	-1.9614155322843283	AGCATTAGCATTGTC
chr3	151837884	151837885	chr3:151837885:T:C	rs35158710	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr3	151910284	151910285	chr3:151910285:T:C	rs16863749	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr3	152298671	152298672	chr3:152298672:G:T	rs17368404	G	T	G	Sox1_MA0870.1	17	0	-	0	0	.
chr3	152525444	152525445	chr3:152525445:G:T	rs55725193	G	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr3	152537563	152537564	chr3:152537564:T:C	rs11717127	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr3	152655779	152655780	chr3:152655780:C:A	rs6768283	C	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr3	152874036	152874037	chr3:152874037:C:T	rs62274972	C	T	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	152965383	152965384	chr3:152965384:T:C	rs1916276	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr3	152975674	152975675	chr3:152975675:G:A	rs11920980	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr3	153094614	153094615	chr3:153094615:T:A	rs9877520	T	A	T	Sox1_MA0870.1	18	0	-	0	0	.
chr3	153270025	153270026	chr3:153270026:T:C	rs16822472	T	C	C	Sox1_MA0870.1	13	1	+	4.6637388496843215	2.4860835522333264	AAGACTATCAGTGTC
chr3	153296206	153296207	chr3:153296207:T:A	rs7641790	T	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	153593463	153593464	chr3:153593464:G:C	rs12633877	G	C	g	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	153624998	153624999	chr3:153624999:T:C	rs566925389	T	C	T	Sox1_MA0870.1	13	1	+	10.199937581164052	8.022282283713057	TACAATTCTATTGTT
chr3	153671814	153671815	chr3:153671815:C:T	rs41490148	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	153689008	153689009	chr3:153689009:T:C	rs9835985	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	153761261	153761262	chr3:153761262:G:A	rs114741504	G	A	g	Sox1_MA0870.1	23	0	+	0	0	.
chr3	154085033	154085034	chr3:154085034:C:T	rs1405895	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr3	154241238	154241239	chr3:154241239:G:T	rs181443	G	T	G	Sox1_MA0870.1	2	1	-	9.061353036806532	2.1525982574913107	AACAAAAACATTGGT
chr3	154384544	154384545	chr3:154384545:A:C	rs696855	A	C	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	154842606	154842607	chr3:154842607:G:C	rs11924679	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr3	155079516	155079517	chr3:155079517:C:T	rs555476269	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr3	155231772	155231773	chr3:155231773:C:T	rs6778088	C	T	T	Sox1_MA0870.1	7	1	-	5.398167656331875	5.795145984128384	AACAAAAGCATTTTT
chr3	155231797	155231798	chr3:155231798:C:T	rs144446160	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	155292984	155292985	chr3:155292985:T:C	rs371667497	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr3	155421035	155421036	chr3:155421036:T:C	rs114008793	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	155554413	155554414	chr3:155554414:G:A	rs359550	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr3	155753259	155753260	chr3:155753260:T:C	rs9818179	T	C	T	Sox1_MA0870.1	11	1	+	9.617155287788307	4.661760301977973	CTCAATTTCATTGCT
chr3	156016763	156016764	chr3:156016764:T:G	rs7618886	T	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr3	156037537	156037538	chr3:156037538:G:A	rs9848466	G	A	g	Sox1_MA0870.1	10	1	-	5.857147370182016	12.66584445431835	AACAATTTCACTGGT
chr3	156037564	156037565	chr3:156037565:C:T	rs113841314	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	156341458	156341459	chr3:156341459:C:A	rs142225903	C	A	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	156388435	156388436	chr3:156388436:T:C	rs3755629	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	156460133	156460134	chr3:156460134:G:A	rs3817460	G	A	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	156617881	156617882	chr3:156617882:G:C	rs59343105	G	C	G	Sox1_MA0870.1	27	0	-	0	0	.
chr3	156617923	156617924	chr3:156617924:T:C	rs2176618	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr3	156819329	156819330	chr3:156819330:T:A	rs919520	T	A	T	Sox1_MA0870.1	28	0	+	0	0	.
chr3	157104028	157104029	chr3:157104029:T:C	rs6805954	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr3	157132524	157132525	chr3:157132525:A:G	rs56214236	A	G	A	Sox1_MA0870.1	1	1	+	4.057225288496017	-0.04106536689712559	AACACTCACAGTGCA
chr3	157161022	157161023	chr3:157161023:G:A	rs879945711	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr3	157358044	157358045	chr3:157358045:C:T	rs9990136	C	T	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	157582831	157582832	chr3:157582832:G:T	rs548763578	G	T	g	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	157702186	157702187	chr3:157702187:T:C	rs7609979	T	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr3	157760416	157760417	chr3:157760417:C:A	rs703175	C	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr3	158093408	158093409	chr3:158093409:A:T	rs60410659	A	T	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	158104879	158104880	chr3:158104880:T:C	rs1915940	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	158168130	158168131	chr3:158168131:C:T	rs73164094	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	158168142	158168143	chr3:158168143:C:T	rs7617503	C	T	T	Sox1_MA0870.1	11	1	+	8.190858428881274	13.146253414691607	TACAATAGCAGCGTT
chr3	158261914	158261915	chr3:158261915:C:T	rs827113	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	158334866	158334867	chr3:158334867:G:A	rs6806720	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr3	158790742	158790743	chr3:158790743:C:T	rs61796761	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr3	159175022	159175023	chr3:159175023:C:T	rs4269119	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	159322375	159322376	chr3:159322376:C:T	rs1012724329	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr3	159634353	159634354	chr3:159634354:G:A	rs9832970	G	A	A	Sox1_MA0870.1	4	1	-	5.951762333855326	1.1309970143103554	TACACTTACATAGTT
chr3	159650791	159650792	chr3:159650792:T:C	rs1978830	T	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr3	160612651	160612652	chr3:160612652:T:C	rs10513556	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr3	160612661	160612662	chr3:160612662:T:C	rs6769010	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr3	160677075	160677076	chr3:160677076:T:C	rs115086380	T	C	T	Sox1_MA0870.1	5	1	+	4.31182635110528	-2.5913384075424806	CACCATGGCATTGGC
chr3	160784674	160784675	chr3:160784675:A:G	rs78541969	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	160793781	160793782	chr3:160793782:A:G	rs140457474	A	G	A	Sox1_MA0870.1	13	1	-	8.712085396413986	6.534430098962993	AACCCTGCCATTGTT
chr3	160812034	160812035	chr3:160812035:T:C	rs9839885	T	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr3	160837455	160837456	chr3:160837456:G:A	rs145744522	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	160893539	160893540	chr3:160893540:T:G	rs1374789	T	G	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	161108916	161108917	chr3:161108917:C:A	rs544851735	C	A	C	Sox1_MA0870.1	34	0	-	0	0	.
chr3	161108941	161108942	chr3:161108942:T:G	rs6775897	T	G	T	Sox1_MA0870.1	9	1	-	8.628333184258736	1.7195784049435159	CACAATGACAGTGCA
chr3	161382881	161382882	chr3:161382882:T:C	rs459923	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	161490185	161490186	chr3:161490186:C:G	rs7624747	C	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr3	161671024	161671025	chr3:161671025:C:T	rs1588908	C	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr3	162008066	162008067	chr3:162008067:C:T	rs12630366	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr3	162041422	162041423	chr3:162041423:A:C	rs1397238	A	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr3	162073610	162073611	chr3:162073611:T:C	rs12696134	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr3	162073654	162073655	chr3:162073655:C:T	rs73018723	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr3	162214747	162214748	chr3:162214748:A:G	rs7340714	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr3	162709399	162709400	chr3:162709400:T:C	rs11919182	T	C	T	Sox1_MA0870.1	11	1	+	4.188779646050734	-0.7666153397595995	CATAATCACATTGTT
chr3	162932004	162932005	chr3:162932005:C:T	rs12632154	C	T	T	Sox1_MA0870.1	12	1	-	4.912240375965059	-1.9965144033501625	AACAAAAGCAGTGGC
chr3	163916974	163916975	chr3:163916975:T:A	rs574323895	T	A	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	163916976	163916977	chr3:163916977:G:A	rs114917840	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr3	163954913	163954914	chr3:163954914:C:T	rs12489788	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	164116337	164116338	chr3:164116338:T:C	rs6548330	T	C	C	Sox1_MA0870.1	9	1	-	4.380332908546808	-2.5284218707684123	TGAAATAGCATTGTT
chr3	164186361	164186362	chr3:164186362:A:C	rs788899	A	C	C	Sox1_MA0870.1	7	1	+	5.659617735087334	5.229856907551293	AACAATTATCTTGTT
chr3	164337703	164337704	chr3:164337704:C:T	rs76315165	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr3	164519523	164519524	chr3:164519524:C:T	rs7642358	C	T	C	Sox1_MA0870.1	1	1	+	4.068722593707958	4.560578731391317	ACCACTGTGATTGCT
chr3	164559860	164559861	chr3:164559861:G:A	rs1017788	G	A	a	Sox1_MA0870.1	10	1	-	6.979305540630419	13.788002624766753	CACAATTACACTGTG
chr3	165323327	165323328	chr3:165323328:C:A	rs9841819	C	A	C	Sox1_MA0870.1	8	1	+	9.154134254452854	3.260964600134642	CACAATTCCAGTGCC
chr3	165406610	165406611	chr3:165406611:T:C	rs1581557	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	165771051	165771052	chr3:165771052:A:G	rs142544999	A	G	A	Sox1_MA0870.1	4	1	-	6.978645506302286	11.799410825847257	AACATTAACAGTGTG
chr3	165833295	165833296	chr3:165833296:T:C	rs4639017	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	166243773	166243774	chr3:166243774:T:C	rs1348072	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr3	166992572	166992573	chr3:166992573:T:A	rs74740169	T	A	T	Sox1_MA0870.1	9	1	-	4.384194274825866	-2.5245605044893544	AACAAAAACAATGTC
chr3	167408225	167408226	chr3:167408226:G:C	rs11918151	G	C	G	Sox1_MA0870.1	8	1	-	6.450490653360745	2.6799876604604074	AACAATAGCAGTATG
chr3	168118272	168118273	chr3:168118273:G:C	rs190182577	G	C	G	Sox1_MA0870.1	29	0	+	0	0	.
chr3	168157378	168157379	chr3:168157379:G:A	rs3851387	G	A	G	Sox1_MA0870.1	6	1	+	4.21884413084945	5.757450823990168	CACCATGGCATTGAA
chr3	168211888	168211889	chr3:168211889:C:T	rs16851992	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	168220099	168220100	chr3:168220100:G:T	rs7624807	G	T	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	168804003	168804004	chr3:168804004:T:G	rs526766	T	G	T	Sox1_MA0870.1	23	0	+	0	0	.
chr3	168863702	168863703	chr3:168863703:A:G	rs7633280	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr3	168876788	168876789	chr3:168876789:T:C	rs186347910	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	169136898	169136899	chr3:169136899:C:T	rs137982399	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	169664538	169664539	chr3:169664539:A:G	rs57455012	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr3	169836340	169836341	chr3:169836341:G:A	rs2421830	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr3	169998850	169998851	chr3:169998851:A:C	rs16854711	A	C	A	Sox1_MA0870.1	21	0	-	0	0	.
chr3	170197164	170197165	chr3:170197165:T:G	rs1798239	T	G	G	Sox1_MA0870.1	4	1	-	12.290303614338852	10.333490679713636	ATCAATACCATTGTG
chr3	170222153	170222154	chr3:170222154:G:C	rs1039055987	G	C	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	170222180	170222181	chr3:170222181:G:T	chr3:170222181:G:T	G	T	G	Sox1_MA0870.1	12	1	+	4.120275295105408	-2.788479484209813	GTCCCTACCATTGTC
chr3	171089649	171089650	chr3:171089650:C:A	rs79460905	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	171089686	171089687	chr3:171089687:T:C	rs116862706	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr3	171349576	171349577	chr3:171349577:A:G	rs2222819	A	G	A	Sox1_MA0870.1	4	1	+	11.74318171958452	4.965603465414331	CACAATTAGATTGTT
chr3	171453418	171453419	chr3:171453419:C:G	rs761424143	C	G	C	Sox1_MA0870.1	33	0	-	0	0	.
chr3	171476021	171476022	chr3:171476022:G:A	rs6801356	G	A	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	171502528	171502529	chr3:171502529:C:T	rs6764402	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr3	171561874	171561875	chr3:171561875:T:C	rs17419458	T	C	T	Sox1_MA0870.1	3	1	-	5.307500095505629	-1.593089571691598	AACAATATCATAGAG
chr3	171729608	171729609	chr3:171729609:G:A	rs7638344	G	A	G	Sox1_MA0870.1	2	1	-	3.653920517330801	-3.2548342619844215	TACAAGGACATTGCC
chr3	171814093	171814094	chr3:171814094:T:C	rs371438769	T	C	T	Sox1_MA0870.1	5	1	+	4.303308143526859	-2.5998566151209013	CACCATAACAGTGAC
chr3	171888727	171888728	chr3:171888728:T:A	rs11918222	T	A	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	172032050	172032051	chr3:172032051:C:A	rs9847412	C	A	C	Sox1_MA0870.1	31	0	-	0	0	.
chr3	172203778	172203779	chr3:172203779:C:T	rs9854411	C	T	T	Sox1_MA0870.1	30	0	-	0	0	.
chr3	172523968	172523969	chr3:172523969:T:C	rs3136586	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	172691439	172691440	chr3:172691440:T:G	rs77399448	T	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	173402312	173402313	chr3:173402313:C:T	rs536445	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr3	173414074	173414075	chr3:173414075:A:G	rs605211	A	G	G	Sox1_MA0870.1	9	1	+	4.747103673759271	-2.16165110555595	CATACTTACATTGTA
chr3	173617393	173617394	chr3:173617394:A:G	rs6785544	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr3	173617398	173617399	chr3:173617399:A:G	rs73174591	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr3	173617415	173617416	chr3:173617416:A:G	rs6785556	A	G	A	Sox1_MA0870.1	10	1	-	5.67510856908361	-1.1335885150527232	ACAAATTGCATTGTT
chr3	173661812	173661813	chr3:173661813:A:G	rs1502483	A	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr3	173743492	173743493	chr3:173743493:T:A	rs12489631	T	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	174100493	174100494	chr3:174100494:A:C	rs9834157	A	C	A	Sox1_MA0870.1	1	1	+	5.299007305010367	1.5298669201658672	AACCCTTTCAGTGTG
chr3	174156594	174156595	chr3:174156595:G:A	rs1421428	G	A	G	Sox1_MA0870.1	2	1	-	7.038989143313719	0.13023436399849608	AACAATACCTTTGAT
chr3	174216858	174216859	chr3:174216859:G:A	rs6764226	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr3	174404956	174404957	chr3:174404957:C:T	rs60437291	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	174583460	174583461	chr3:174583461:C:T	rs9855684	C	T	T	Sox1_MA0870.1	12	1	-	3.734187717175554	-3.174567062139666	GACACTGTCACTGTA
chr3	174687114	174687115	chr3:174687115:G:C	rs549402	G	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	174701093	174701094	chr3:174701094:G:C	rs9866752	G	C	G	Sox1_MA0870.1	21	0	-	0	0	.
chr3	175176869	175176870	chr3:175176870:T:C	rs9817962	T	C	T	Sox1_MA0870.1	11	1	+	7.273879201759243	2.3184842159489087	CACAAAATCAGTGTC
chr3	175288066	175288067	chr3:175288067:C:T	rs7650940	C	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	175411831	175411832	chr3:175411832:A:T	rs9879366	A	T	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	175609191	175609192	chr3:175609192:C:G	rs10936860	C	G	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	175609193	175609194	chr3:175609194:T:C	rs10936861	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	175685789	175685790	chr3:175685790:G:A	rs150823927	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr3	176432065	176432066	chr3:176432066:A:G	rs73177133	A	G	a	Sox1_MA0870.1	22	0	-	0	0	.
chr3	176790591	176790592	chr3:176790592:C:T	rs9834937	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	176840760	176840761	chr3:176840761:G:T	chr3:176840761:G:T	G	T	G	Sox1_MA0870.1	26	0	+	0	0	.
chr3	177106287	177106288	chr3:177106288:A:C	rs62296570	A	C	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	177151256	177151257	chr3:177151257:T:C	rs6791268	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	177199604	177199605	chr3:177199605:T:G	rs73171149	T	G	T	Sox1_MA0870.1	14	1	+	5.298750244864701	3.573068157146597	AACCATACCATTCTT
chr3	177335919	177335920	chr3:177335920:C:T	rs769869043	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr3	177421122	177421123	chr3:177421123:G:A	rs35435237	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	177439978	177439979	chr3:177439979:A:C	chr3:177439979:A:C	A	C	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	177468839	177468840	chr3:177468840:T:C	rs1392218	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr3	177468860	177468861	chr3:177468861:G:C	rs1392217	G	C	G	Sox1_MA0870.1	0	1	-	5.327645686008495	5.221819891756722	CTCAATTACTTTGTT
chr3	177570054	177570055	chr3:177570055:T:C	rs11707350	T	C	T	Sox1_MA0870.1	6	1	-	4.548429254941071	3.0098225618003527	GACACAAACATTGAC
chr3	177596132	177596133	chr3:177596133:G:A	rs55750640	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr3	177773453	177773454	chr3:177773454:T:C	rs9829938	T	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	177816844	177816845	chr3:177816845:T:C	rs533362556	T	C	T	Sox1_MA0870.1	5	1	+	10.932211968200434	4.029047209552675	GACAATTGCATTGCA
chr3	178067491	178067492	chr3:178067492:A:G	rs9846895	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	178097737	178097738	chr3:178097738:C:A	chr3:178097738:C:A	C	A	C	Sox1_MA0870.1	18	0	+	0	0	.
chr3	178267606	178267607	chr3:178267607:T:C	rs4857763	T	C	C	Sox1_MA0870.1	6	1	+	5.732714504585285	1.3165642174663836	CACACTTATATTGGT
chr3	179105474	179105475	chr3:179105475:A:G	rs12497857	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr3	179147166	179147167	chr3:179147167:C:T	rs143821728	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	179605231	179605232	chr3:179605232:G:A	rs114012240	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr3	180753741	180753742	chr3:180753742:G:T	rs73190312	G	T	G	Sox1_MA0870.1	7	1	-	4.298840318481483	4.728601146017525	GATAATTCGATTGTT
chr3	181210433	181210434	chr3:181210434:G:A	rs549888797	G	A	G	Sox1_MA0870.1	0	1	+	5.433333919112215	6.775457061918969	GACAAATACATCGTT
chr3	182358858	182358859	chr3:182358859:A:G	rs16833062	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	182437273	182437274	chr3:182437274:A:G	rs17826722	A	G	A	Sox1_MA0870.1	5	1	-	7.568099351158595	0.6649345925108343	AACAATACTATTGGA
chr3	182683768	182683769	chr3:182683769:G:A	chr3:182683769:G:A	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr3	182683775	182683776	chr3:182683776:G:A	rs550457758	G	A	G	Sox1_MA0870.1	14	1	-	3.5144593234321486	5.0254687279135535	AAAAATTGCAGTGCC
chr3	182761193	182761194	chr3:182761194:C:T	chr3:182761194:C:T	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr3	183144346	183144347	chr3:183144347:A:G	rs79155994	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr3	183301214	183301215	chr3:183301215:C:T	rs73066044	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr3	183516219	183516220	chr3:183516220:G:A	rs78325341	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr3	183580543	183580544	chr3:183580544:T:C	rs4066036	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr3	184449794	184449795	chr3:184449795:C:T	rs12496289	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	184506740	184506741	chr3:184506741:A:G	rs73179208	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	184506776	184506777	chr3:184506777:T:G	rs7612178	T	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr3	184620425	184620426	chr3:184620426:T:A	rs4621307	T	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	184725068	184725069	chr3:184725069:C:T	rs1313639038	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr3	184800591	184800592	chr3:184800592:T:C	rs6786934	T	C	C	Sox1_MA0870.1	17	0	-	0	0	.
chr3	185021337	185021338	chr3:185021338:G:A	rs4605520	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr3	185052940	185052941	chr3:185052941:C:T	rs35670830	C	T	C	Sox1_MA0870.1	3	1	-	3.998839801263675	10.899429468460898	GACGATTCCATTGCA
chr3	185123395	185123396	chr3:185123396:C:G	rs7629390	C	G	C	Sox1_MA0870.1	4	1	+	5.776126782139976	0.9553614625950044	AACACTTAGATTGAA
chr3	185582606	185582607	chr3:185582607:G:A	rs7651346	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	185814062	185814063	chr3:185814063:C:T	rs13321016	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	185919951	185919952	chr3:185919952:T:C	rs16860329	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr3	185979950	185979951	chr3:185979951:T:C	rs1023179995	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	186096852	186096853	chr3:186096853:G:A	rs6809651	G	A	g	Sox1_MA0870.1	-14	0	-	0	0	.
chr3	186259520	186259521	chr3:186259521:C:T	rs2268835	C	T	T	Sox1_MA0870.1	2	1	+	6.774749943005338	-0.13400483630988436	AACAATAGCTTTGGT
chr3	186505434	186505435	chr3:186505435:T:C	rs3941831	T	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr3	186513595	186513596	chr3:186513596:C:A	rs79550230	C	A	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	187063077	187063078	chr3:187063078:G:A	rs10433485	G	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr3	187063789	187063790	chr3:187063790:G:T	rs553353252	G	T	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	187196794	187196795	chr3:187196795:A:G	rs575590466	A	G	A	Sox1_MA0870.1	3	1	+	3.5365325266384966	-3.3640571405587276	CACAAGGCCATTGCA
chr3	187196814	187196815	chr3:187196815:C:T	rs6772329	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr3	187214138	187214139	chr3:187214139:A:G	rs2006377	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	187475459	187475460	chr3:187475460:C:T	rs78012014	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr3	187619763	187619764	chr3:187619764:G:A	rs61338908	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr3	187699925	187699926	chr3:187699926:C:T	rs11928175	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	187735581	187735582	chr3:187735582:A:G	rs375021514	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	187839702	187839703	chr3:187839703:T:C	rs59161098	T	C	T	Sox1_MA0870.1	3	1	-	4.47596604648864	-2.424623620708586	TCCAATATCAGTGAC
chr3	187878955	187878956	chr3:187878956:G:T	rs6788294	G	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr3	187887526	187887527	chr3:187887527:C:T	rs6444265	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr3	187906121	187906122	chr3:187906122:A:G	rs9832302	A	G	A	Sox1_MA0870.1	5	1	-	5.580249982850544	-1.3229147757972162	ATCCATGACAGTGTT
chr3	187968052	187968053	chr3:187968053:T:C	rs6797424	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr3	188008849	188008850	chr3:188008850:C:T	rs74778406	C	T	C	Sox1_MA0870.1	9	1	+	4.040700873557383	4.040700873557383	CACACTTCCCTTGCT
chr3	188111372	188111373	chr3:188111373:A:C	rs13080242	A	C	A	Sox1_MA0870.1	26	0	+	0	0	.
chr3	188155120	188155121	chr3:188155121:A:G	rs76444825	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr3	188341654	188341655	chr3:188341655:A:G	rs13076750	A	G	G	Sox1_MA0870.1	0	1	+	11.29057089209627	9.948447749289517	AACACTAGCATTGCA
chr3	188491059	188491060	chr3:188491060:G:A	rs78659445	G	A	G	Sox1_MA0870.1	14	1	-	3.481676823692615	4.99268622817402	AAAAATTCCAGTGCC
chr3	188494741	188494742	chr3:188494742:G:T	rs12488120	G	T	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	188541116	188541117	chr3:188541117:C:A	rs1019673	C	A	A	Sox1_MA0870.1	2	1	+	5.085305905887855	-1.8234488734273662	AACCCTATCATTGGC
chr3	188541135	188541136	chr3:188541136:A:G	rs1515431	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr3	188553770	188553771	chr3:188553771:G:A	rs74433013	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr3	188635576	188635577	chr3:188635577:T:C	rs1828950	T	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr3	188656799	188656800	chr3:188656800:C:T	rs1515421	C	T	C	Sox1_MA0870.1	8	1	+	4.931198879410582	0.7495893327732994	AACATTGGCATTGCA
chr3	188719878	188719879	chr3:188719879:T:C	rs145155147	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	189270468	189270469	chr3:189270469:T:C	rs116837713	T	C	C	Sox1_MA0870.1	11	1	+	3.223613401932156	-1.731781583878178	CAGAATGGCAGTGCT
chr3	189364688	189364689	chr3:189364689:T:C	rs13068281	T	C	T	Sox1_MA0870.1	6	1	-	4.185856596025559	2.64724990288484	GAAAATACCATTGAC
chr3	189375606	189375607	chr3:189375607:T:C	rs260592	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	189393821	189393822	chr3:189393822:A:C	rs192942595	A	C	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr3	189437884	189437885	chr3:189437885:A:C	rs114471629	A	C	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	189485526	189485527	chr3:189485527:T:C	rs6784749	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr3	189512414	189512415	chr3:189512415:A:G	rs1364593	A	G	G	Sox1_MA0870.1	13	1	-	10.64518924269637	8.467533945245375	TCCAATTGCATTGTT
chr3	189531814	189531815	chr3:189531815:A:G	rs7615576	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr3	189573282	189573283	chr3:189573283:T:C	rs118065855	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr3	189720684	189720685	chr3:189720685:G:A	rs10804919	G	A	G	Sox1_MA0870.1	0	1	+	4.819576184957148	6.1616993277639	GACTATGCCATTGCA
chr3	189842059	189842060	chr3:189842060:C:G	rs73199755	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr3	189842060	189842061	chr3:189842061:G:A	rs373564022	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr3	189861721	189861722	chr3:189861722:G:A	rs17448036	G	A	A	Sox1_MA0870.1	13	1	-	4.486345432291369	6.664000729742364	ATCAATTACAATGCT
chr3	189863215	189863216	chr3:189863216:G:T	rs1913722	G	T	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr3	189863230	189863231	chr3:189863231:A:G	rs11924151	A	G	A	Sox1_MA0870.1	0	1	+	6.292140947614696	4.950017804807942	AGCAATTCCAGTGCC
chr3	190130879	190130880	chr3:190130880:A:C	rs838271	A	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr3	190133284	190133285	chr3:190133285:A:G	rs1002993	A	G	A	Sox1_MA0870.1	11	1	-	9.071424797336675	4.11602981152634	CACTATAACATTGTA
chr3	190370140	190370141	chr3:190370141:C:T	rs183339077	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr3	190370143	190370144	chr3:190370144:T:C	rs1425104	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	190386233	190386234	chr3:190386234:G:A	rs17444838	G	A	A	Sox1_MA0870.1	17	0	-	0	0	.
chr3	190807726	190807727	chr3:190807727:A:G	rs9870207	A	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr3	191198115	191198116	chr3:191198116:C:T	rs6444518	C	T	T	Sox1_MA0870.1	0	1	-	8.505126231376254	9.847249374183006	GACAATTACATGGTT
chr3	191376129	191376130	chr3:191376130:G:C	rs17754685	G	C	G	Sox1_MA0870.1	24	0	-	0	0	.
chr3	191801768	191801769	chr3:191801769:G:A	rs1426207333	G	A	G	Sox1_MA0870.1	0	1	+	5.850383818218769	7.192506961025521	GCCAATATCAGTGCA
chr3	192039830	192039831	chr3:192039831:C:T	rs6773170	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr3	192091634	192091635	chr3:192091635:G:A	rs62293431	G	A	G	Sox1_MA0870.1	8	1	-	4.503081868077057	0.3214723214397748	CTCACTACCAGTGCA
chr3	192171704	192171705	chr3:192171705:C:T	rs12495412	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr3	192336528	192336529	chr3:192336529:G:A	rs13081106	G	A	G	Sox1_MA0870.1	2	1	-	5.818987300241057	-1.089767479074165	AACTATATGATTGCT
chr3	192637185	192637186	chr3:192637186:A:G	rs74786214	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr3	192734874	192734875	chr3:192734875:C:T	rs13061824	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr3	192772703	192772704	chr3:192772704:C:G	rs77244942	C	G	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	192827410	192827411	chr3:192827411:G:A	rs138476913	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr3	192827412	192827413	chr3:192827413:C:T	rs7626121	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr3	192927276	192927277	chr3:192927277:C:G	rs2593895	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr3	193189920	193189921	chr3:193189921:T:C	rs1462486	T	C	C	Sox1_MA0870.1	9	1	-	4.622583663073603	-2.286171116241618	CACAATAACATCCTT
chr3	193701835	193701836	chr3:193701836:C:T	rs73069792	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr3	193712336	193712337	chr3:193712337:A:G	chr3:193712337:A:G	A	G	A	Sox1_MA0870.1	10	1	-	4.062585371247003	-2.7461117128893298	GTCAATAGCATCGCC
chr3	193791617	193791618	chr3:193791618:G:C	rs111303172	G	C	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr3	193822753	193822754	chr3:193822754:G:A	rs180765202	G	A	G	Sox1_MA0870.1	13	1	-	5.457306561649443	7.634961859100438	GACATTGCCATTGCT
chr3	193865502	193865503	chr3:193865503:T:C	rs115293330	T	C	T	Sox1_MA0870.1	10	1	+	5.470510273250681	-1.3381868108856532	GTCACTACCATTGAA
chr3	193879838	193879839	chr3:193879839:G:A	rs138828430	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr3	193932301	193932302	chr3:193932302:C:T	rs12485924	C	T	C	Sox1_MA0870.1	12	1	-	5.540889728055758	-1.367865051259463	GACTATGTCATTGAT
chr3	194010694	194010695	chr3:194010695:G:C	rs4687495	G	C	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr3	194061579	194061580	chr3:194061580:G:A	rs28636913	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr3	194137511	194137512	chr3:194137512:C:G	rs571779186	C	G	C	Sox1_MA0870.1	7	1	-	5.046532089011218	5.013749589271685	CACACTAGCGTTGCT
chr3	194246507	194246508	chr3:194246508:C:G	rs891571966	C	G	C	Sox1_MA0870.1	15	0	+	0	0	.
chr3	194249479	194249480	chr3:194249480:G:C	rs6444785	G	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr3	194256989	194256990	chr3:194256990:T:C	rs11716465	T	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr3	194383441	194383442	chr3:194383442:G:A	rs114068214	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr3	194383492	194383493	chr3:194383493:A:C	rs35639299	A	C	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr3	194485487	194485488	chr3:194485488:A:G	rs139445312	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr3	194556503	194556504	chr3:194556504:A:G	rs13078606	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr3	194566268	194566269	chr3:194566269:G:T	chr3:194566269:G:T	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr3	194661502	194661503	chr3:194661503:C:T	rs114997105	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr3	194722830	194722831	chr3:194722831:G:A	rs12695042	G	A	A	Sox1_MA0870.1	14	1	+	6.3318321711153445	6.1565009340483	GAAAATTTCATTGTG
chr3	194767189	194767190	chr3:194767190:T:A	rs9857633	T	A	T	Sox1_MA0870.1	11	1	+	8.239642372191415	1.3369096853345834	AACAATAGCCTTGCT
chr3	194797799	194797800	chr3:194797800:A:G	rs111270445	A	G	A	Sox1_MA0870.1	4	1	+	11.457468153558478	4.679889899388289	AGCAATATCATTGTG
chr3	194841414	194841415	chr3:194841415:G:A	rs79956118	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr3	194887325	194887326	chr3:194887326:G:A	rs11720362	G	A	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr3	194990469	194990470	chr3:194990470:G:A	rs78070501	G	A	g	Sox1_MA0870.1	-8	0	+	0	0	.
chr3	194990508	194990509	chr3:194990509:G:A	rs75370217	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr3	195004768	195004769	chr3:195004769:A:G	rs2048905	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr3	195068211	195068212	chr3:195068212:A:G	rs79640414	A	G	A	Sox1_MA0870.1	1	1	-	5.697520608939038	5.205664471255679	CTCAATGCCATTGGA
chr3	195106187	195106188	chr3:195106188:T:C	rs9872141	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr3	195130970	195130971	chr3:195130971:A:G	rs1552893	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr3	195377519	195377520	chr3:195377520:T:C	rs1326757567	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr3	195546197	195546198	chr3:195546198:G:A	rs1493701	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr3	195700805	195700806	chr3:195700806:A:G	rs892318199	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr3	195767575	195767576	chr3:195767576:C:T	rs112845197	C	T	-	Sox1_MA0870.1	25	0	+	0	0	.
chr3	196199945	196199946	chr3:196199946:G:A	rs73212109	G	A	A	Sox1_MA0870.1	21	0	-	0	0	.
chr3	196285752	196285753	chr3:196285753:C:T	rs73086649	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	196508319	196508320	chr3:196508320:A:G	rs73891273	A	G	A	Sox1_MA0870.1	9	1	+	5.857723529265889	-1.051031250049332	TTCAATTCCATTGAA
chr3	196525135	196525136	chr3:196525136:G:A	rs7648243	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr3	196749171	196749172	chr3:196749172:G:C	rs1104375	G	C	G	Sox1_MA0870.1	18	0	+	0	0	.
chr3	196793178	196793179	chr3:196793179:C:T	rs79390411	C	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr3	196867519	196867520	chr3:196867520:G:T	rs73891549	G	T	G	Sox1_MA0870.1	12	1	+	3.27056725860565	-3.63818752070957	CACAATACCAGGGGT
chr3	196960016	196960017	chr3:196960017:C:T	rs73208209	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr3	197408669	197408670	chr3:197408670:G:A	rs116395604	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	197409927	197409928	chr3:197409928:A:G	rs2003079	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr3	197417937	197417938	chr3:197417938:G:C	rs9873160	G	C	G	Sox1_MA0870.1	25	0	-	0	0	.
chr3	197417978	197417979	chr3:197417979:G:T	rs9873185	G	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr3	197504311	197504312	chr3:197504312:C:T	rs2686075	C	T	T	Sox1_MA0870.1	12	1	-	3.589290943637412	-3.319463835677808	AACACTAACACTGGG
chr3	197504320	197504321	chr3:197504321:T:G	rs2686074	T	G	T	Sox1_MA0870.1	3	1	-	3.589290943637412	-1.4964739814007642	AACACTAACACTGGG
chr3	197950477	197950478	chr3:197950478:G:C	rs7644053	G	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	121739	121740	chr4:121740:G:A	rs10025424	G	A	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	121771	121772	chr4:121772:C:T	rs9996597	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr4	234480	234481	chr4:234481:T:G	rs140534799	T	G	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	306617	306618	chr4:306618:T:C	rs78640123	T	C	T	Sox1_MA0870.1	11	1	+	4.9621728087137615	0.006777822903428876	CCCTATAACAGTGTT
chr4	716508	716509	chr4:716509:G:A	rs201672965	G	A	-	Sox1_MA0870.1	6	1	-	4.991608829899265	9.407759117018166	CACACTCGCAGTGTC
chr4	716551	716552	chr4:716552:G:A	rs530993354	G	A	-	Sox1_MA0870.1	8	1	-	4.991608829899265	0.8099992832619827	CACACTCGCAGTGTC
chr4	716569	716570	chr4:716570:C:T	rs200482937	C	T	-	Sox1_MA0870.1	-10	0	-	0	0	.
chr4	744723	744724	chr4:744724:T:C	rs6841958	T	C	C	Sox1_MA0870.1	1	1	-	4.878852135756447	0.7805614803633043	AACACTAACACTGCA
chr4	829515	829516	chr4:829516:C:T	rs7378189	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	829518	829519	chr4:829519:C:G	rs11737021	C	G	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	1137982	1137983	chr4:1137983:A:G	rs80099866	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr4	1252050	1252051	chr4:1252051:A:G	rs545663867	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr4	1509981	1509982	chr4:1509982:C:T	rs146842826	C	T	-	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	1524554	1524555	chr4:1524555:G:A	rs377403006	G	A	g	Sox1_MA0870.1	12	1	+	10.553348574030554	3.6445937947153344	ATCACTGGCATTGTT
chr4	1739935	1739936	chr4:1739936:G:A	rs111894970	G	A	G	Sox1_MA0870.1	4	1	-	3.8537582576542486	-0.9670070618907237	CACACAGCCATTGCC
chr4	1967722	1967723	chr4:1967723:G:T	rs28541559	G	T	G	Sox1_MA0870.1	15	0	+	0	0	.
chr4	1979501	1979502	chr4:1979502:G:T	rs73202837	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr4	2360928	2360929	chr4:2360929:T:C	rs3135125	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	2372012	2372013	chr4:2372013:G:T	rs762844	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr4	2489967	2489968	chr4:2489968:G:A	rs17132647	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	2705404	2705405	chr4:2705405:G:A	rs4690016	G	A	A	Sox1_MA0870.1	3	1	+	5.201271981511132	12.101861648708356	TACGCTAACATTGTG
chr4	2762175	2762176	chr4:2762176:T:C	rs1263493	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	2848414	2848415	chr4:2848415:G:A	rs12503220	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr4	2953737	2953738	chr4:2953738:T:C	rs1475975	T	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr4	2967343	2967344	chr4:2967344:G:T	rs17778731	G	T	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	3057437	3057438	chr4:3057438:A:C	rs28856696	A	C	A	Sox1_MA0870.1	16	0	+	0	0	.
chr4	3241210	3241211	chr4:3241211:G:T	rs144364475	G	T	G	Sox1_MA0870.1	22	0	-	0	0	.
chr4	3291926	3291927	chr4:3291927:C:T	rs115778476	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr4	3689463	3689464	chr4:3689464:C:T	rs10805007	C	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr4	3772983	3772984	chr4:3772984:G:A	rs73792669	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	3832140	3832141	chr4:3832141:G:A	rs28552809	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr4	3861201	3861202	chr4:3861202:A:G	rs28431162	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr4	3877514	3877515	chr4:3877515:G:A	rs148446047	G	A	G	Sox1_MA0870.1	5	1	+	6.853059001824715	8.73709374716194	AACAAGAACAGTGTG
chr4	3899282	3899283	chr4:3899283:G:C	rs28617372	G	C	-	Sox1_MA0870.1	1	1	+	4.1038928509071	4.433043121455743	GGCAATTGCACTGTT
chr4	4042821	4042822	chr4:4042822:C:G	rs13147402	C	G	c	Sox1_MA0870.1	8	1	+	3.8575979987753883	0.08709500587505115	AACAATTGCTGTGAT
chr4	4149885	4149886	chr4:4149886:A:G	rs143871354	A	G	-	Sox1_MA0870.1	32	0	-	0	0	.
chr4	4197355	4197356	chr4:4197356:T:G	rs34666677	T	G	T	Sox1_MA0870.1	31	0	+	0	0	.
chr4	4284990	4284991	chr4:4284991:T:A	rs3775340	T	A	T	Sox1_MA0870.1	3	1	-	3.7304002703228556	-1.7838950357544796	CTCACTGGCAGTGAT
chr4	4296842	4296843	chr4:4296843:A:G	rs2980167	A	G	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	4325552	4325553	chr4:4325553:C:T	rs1020266	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr4	4429243	4429244	chr4:4429244:G:A	rs13150601	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	4438711	4438712	chr4:4438712:T:C	rs28433883	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr4	4613340	4613341	chr4:4613341:G:C	rs73092023	G	C	G	Sox1_MA0870.1	8	1	-	8.030270441002758	4.259767448102421	ACCACTAACAGTGTG
chr4	4734264	4734265	chr4:4734265:T:C	rs67666605	T	C	T	Sox1_MA0870.1	6	1	+	4.0156037628518115	-0.40054652426708925	CACACCTGCAGTGTT
chr4	4872156	4872157	chr4:4872157:C:T	rs7676200	C	T	T	Sox1_MA0870.1	2	1	+	3.8655984881030596	-3.0431562912121612	GACACTTTCAGGGTT
chr4	4874685	4874686	chr4:4874686:C:A	rs191386084	C	A	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	4911214	4911215	chr4:4911215:A:G	rs4593079	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	4914375	4914376	chr4:4914376:A:G	rs77564418	A	G	A	Sox1_MA0870.1	2	1	+	8.913262672653769	8.913262672653769	AAAAATAACATTGTA
chr4	5114519	5114520	chr4:5114520:A:G	rs12509816	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr4	5365251	5365252	chr4:5365252:C:A	rs6824273	C	A	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	5398326	5398327	chr4:5398327:T:A	rs2301859	T	A	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr4	5654538	5654539	chr4:5654539:T:A	rs73198196	T	A	T	Sox1_MA0870.1	33	0	-	0	0	.
chr4	5712182	5712183	chr4:5712183:G:A	rs3774856	G	A	A	Sox1_MA0870.1	17	0	-	0	0	.
chr4	5774315	5774316	chr4:5774316:C:A	rs17747499	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	5863530	5863531	chr4:5863531:C:A	rs76377619	C	A	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	6060911	6060912	chr4:6060912:G:T	rs6821383	G	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr4	6097975	6097976	chr4:6097976:A:T	rs1877764	A	T	A	Sox1_MA0870.1	22	0	+	0	0	.
chr4	6097976	6097977	chr4:6097977:A:T	rs1877763	A	T	A	Sox1_MA0870.1	23	0	+	0	0	.
chr4	6254256	6254257	chr4:6254257:A:G	rs55637334	A	G	G	Sox1_MA0870.1	13	1	-	3.366227259165474	1.1885719617144797	GACACTAGCTGTGTC
chr4	6303034	6303035	chr4:6303035:C:G	rs12508118	C	G	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	6305899	6305900	chr4:6305900:G:A	rs73071177	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr4	6305929	6305930	chr4:6305930:A:G	rs114082424	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr4	6305941	6305942	chr4:6305942:G:A	rs7682228	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr4	6402803	6402804	chr4:6402804:G:A	rs7655407	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	6736495	6736496	chr4:6736496:C:T	rs111400911	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr4	6892379	6892380	chr4:6892380:G:C	rs548301280	G	C	G	Sox1_MA0870.1	19	0	-	0	0	.
chr4	6965134	6965135	chr4:6965135:A:G	rs79639066	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	7133399	7133400	chr4:7133400:G:A	rs41384948	G	A	A	Sox1_MA0870.1	10	1	-	6.351196365926798	13.159893450063132	CACACTTGCACTGTT
chr4	7133425	7133426	chr4:7133426:C:A	rs57999582	C	A	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	7144595	7144596	chr4:7144596:C:T	rs111571068	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr4	7144596	7144597	chr4:7144597:G:A	rs113111932	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr4	7174176	7174177	chr4:7174177:G:C	rs149735218	G	C	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	7183971	7183972	chr4:7183972:A:T	rs3936663	A	T	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	7302838	7302839	chr4:7302839:G:A	rs4689687	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr4	7354059	7354060	chr4:7354060:C:T	rs62279105	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr4	7665758	7665759	chr4:7665759:C:T	rs2214459	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr4	7764497	7764498	chr4:7764498:G:A	rs12639946	G	A	G	Sox1_MA0870.1	7	1	-	3.890195343659725	3.8783662911113517	CACATTCCCATTGTT
chr4	7797579	7797580	chr4:7797580:A:G	rs11721583	A	G	A	Sox1_MA0870.1	10	1	-	4.179617564144648	-2.629079519991686	GACAACATCATTGAC
chr4	7797598	7797599	chr4:7797599:G:C	rs6829710	G	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	7807744	7807745	chr4:7807745:A:G	rs4689869	A	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr4	7861496	7861497	chr4:7861497:T:A	rs28533862	T	A	T	Sox1_MA0870.1	23	0	+	0	0	.
chr4	8010937	8010938	chr4:8010938:A:G	rs6837516	A	G	G	Sox1_MA0870.1	6	1	+	4.7080269414078	3.169420248267082	AGCACAACCATTGTC
chr4	8090179	8090180	chr4:8090180:C:G	rs13119950	C	G	G	Sox1_MA0870.1	12	1	-	6.0416289500421385	-0.8671258292730828	GACCATAGCATTGAC
chr4	8106078	8106079	chr4:8106079:G:T	rs77311096	G	T	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	8147742	8147743	chr4:8147743:G:A	rs11734190	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr4	8200483	8200484	chr4:8200484:A:G	rs1281121	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr4	8221759	8221760	chr4:8221760:T:A	rs115664377	T	A	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	8251883	8251884	chr4:8251884:T:C	rs3852112	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	8393791	8393792	chr4:8393792:T:C	rs556070047	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr4	8393795	8393796	chr4:8393796:C:G	rs912520267	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr4	8423103	8423104	chr4:8423104:G:A	rs2140336	G	A	N	Sox1_MA0870.1	27	0	+	0	0	.
chr4	8517168	8517169	chr4:8517169:C:T	rs7665475	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	8568046	8568047	chr4:8568047:T:C	rs7655379	T	C	T	Sox1_MA0870.1	9	1	-	4.939190339464544	-1.9695644398506755	CCCACTTCCAGTGCT
chr4	8913127	8913128	chr4:8913128:C:T	rs148385862	C	T	c	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	8913129	8913130	chr4:8913130:C:G	rs28610212	C	G	c	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	9151731	9151732	chr4:9151732:T:A	rs35796658	T	A	N	Sox1_MA0870.1	5	1	+	4.33143929750963	-0.6876907158009042	CACAATAACTTTGAA
chr4	9155699	9155700	chr4:9155700:G:C	rs939450074	G	C	N	Sox1_MA0870.1	-1	0	+	0	0	.
chr4	9690877	9690878	chr4:9690878:C:T	rs6814274	C	T	t	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	9809306	9809307	chr4:9809307:G:C	rs1519095	G	C	c	Sox1_MA0870.1	33	0	-	0	0	.
chr4	9930854	9930855	chr4:9930855:A:T	rs6449137	A	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr4	9930885	9930886	chr4:9930886:G:A	rs6837336	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	9936116	9936117	chr4:9936117:C:T	rs71603975	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr4	9947204	9947205	chr4:9947205:C:T	rs998675	C	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	9965166	9965167	chr4:9965167:T:C	rs7663097	T	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	10006279	10006280	chr4:10006280:C:T	rs3796841	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr4	10006299	10006300	chr4:10006300:C:T	rs79695094	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr4	10094571	10094572	chr4:10094572:C:T	rs143334639	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	10094605	10094606	chr4:10094606:C:T	rs73212853	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr4	10129220	10129221	chr4:10129221:A:C	rs6853696	A	C	a	Sox1_MA0870.1	18	0	-	0	0	.
chr4	10150031	10150032	chr4:10150032:A:G	rs6827496	A	G	a	Sox1_MA0870.1	1	1	+	3.967657579045144	-0.13063307634799692	GAGACTTGCATTGCT
chr4	10157906	10157907	chr4:10157907:A:G	rs540504166	A	G	a	Sox1_MA0870.1	-4	0	+	0	0	.
chr4	10157929	10157930	chr4:10157930:G:A	rs2241467	G	A	g	Sox1_MA0870.1	19	0	+	0	0	.
chr4	10262149	10262150	chr4:10262150:C:G	rs4697990	C	G	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	10273309	10273310	chr4:10273310:G:C	rs4697999	G	C	c	Sox1_MA0870.1	2	1	-	6.96432349201599	0.0555687127007678	CACAACATCATTGCT
chr4	10285040	10285041	chr4:10285041:G:A	rs7685241	G	A	A	Sox1_MA0870.1	2	1	-	4.95012346416137	-1.9586313151538506	GGCAATACCATAGTT
chr4	10285062	10285063	chr4:10285063:C:T	rs12640013	C	T	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	10344925	10344926	chr4:10344926:A:G	rs17479487	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	10720714	10720715	chr4:10720715:A:C	rs10000059	A	C	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	10929917	10929918	chr4:10929918:A:G	rs17280854	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr4	10929963	10929964	chr4:10929964:G:T	rs11935551	G	T	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr4	10971621	10971622	chr4:10971622:C:T	rs7681377	C	T	C	Sox1_MA0870.1	14	1	+	7.625759825561332	9.136769230042736	AACAATAGGAGTGCC
chr4	10971636	10971637	chr4:10971637:G:A	rs10516217	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr4	10998532	10998533	chr4:10998533:A:G	rs4697827	A	G	a	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	11067482	11067483	chr4:11067483:T:C	rs10003771	T	C	C	Sox1_MA0870.1	5	1	+	5.3331118602782706	-1.5700528983694886	TACAATAACACTGGT
chr4	11069760	11069761	chr4:11069761:C:G	rs6823245	C	G	G	Sox1_MA0870.1	12	1	-	7.709801403051481	0.8010466237362603	CACACTGAGATTGTC
chr4	11113338	11113339	chr4:11113339:G:C	rs7686463	G	C	G	Sox1_MA0870.1	6	1	+	3.5637250057105687	-0.28686730398191573	CAAAATGGCATTGCA
chr4	11431073	11431074	chr4:11431074:A:G	rs2240901	A	G	A	Sox1_MA0870.1	1	1	+	4.188779646050734	0.0904889906575933	CACAATCACATTATT
chr4	11743626	11743627	chr4:11743627:A:G	rs1873714	A	G	A	Sox1_MA0870.1	4	1	+	13.63889317003265	6.861314915862462	AACAATATCATTGGT
chr4	11814119	11814120	chr4:11814120:T:A	rs7660011	T	A	A	Sox1_MA0870.1	21	0	-	0	0	.
chr4	11882262	11882263	chr4:11882263:A:G	rs17256968	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr4	12179123	12179124	chr4:12179124:T:G	rs724316	T	G	G	Sox1_MA0870.1	10	1	+	4.938294411612997	2.6971694830494366	GGCAATATCATAGTT
chr4	13013929	13013930	chr4:13013930:A:G	rs4834857	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr4	13057217	13057218	chr4:13057218:T:C	rs518375	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr4	13634023	13634024	chr4:13634024:T:C	rs1468681	T	C	T	Sox1_MA0870.1	14	1	-	7.80814184924382	7.983473086310864	CACATTAACATTGTA
chr4	13873084	13873085	chr4:13873085:C:T	rs17812202	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	13873085	13873086	chr4:13873086:A:T	rs73235373	A	T	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr4	13988546	13988547	chr4:13988547:T:C	rs186086090	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	14027232	14027233	chr4:14027233:G:A	rs541971	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr4	14157418	14157419	chr4:14157419:C:T	rs75677384	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr4	14176852	14176853	chr4:14176853:A:C	rs1426135	A	C	a	Sox1_MA0870.1	11	1	-	4.47903404791875	-2.4236986389380815	TAAAATACCAGTGTG
chr4	14306965	14306966	chr4:14306966:T:C	rs11935146	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr4	14410873	14410874	chr4:14410874:A:G	rs17481850	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr4	14478773	14478774	chr4:14478774:T:C	rs2867717	T	C	T	Sox1_MA0870.1	11	1	+	4.750831536292413	-0.2045634495179215	CACAAAAGCAGTGCA
chr4	14478783	14478784	chr4:14478784:A:G	rs35201389	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr4	14621924	14621925	chr4:14621925:A:G	rs4377586	A	G	A	Sox1_MA0870.1	10	1	-	5.217539299120213	-1.59115778501612	TACTCTTGCATTGTG
chr4	14632016	14632017	chr4:14632017:C:T	rs73797427	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	14836317	14836318	chr4:14836318:A:G	rs73239323	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr4	14877571	14877572	chr4:14877572:C:T	rs6848585	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr4	14877585	14877586	chr4:14877586:C:T	rs41328848	C	T	C	Sox1_MA0870.1	1	1	-	5.164027125708828	9.26231778110197	AGCAATTACAGTGAA
chr4	15327421	15327422	chr4:15327422:C:A	rs4440214	C	A	A	Sox1_MA0870.1	2	1	+	8.525010001836602	1.6162552225213807	AACCCTACCATTGTG
chr4	15561786	15561787	chr4:15561787:T:A	rs741180	T	A	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	15741362	15741363	chr4:15741363:T:C	rs6852450	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	15776840	15776841	chr4:15776841:T:C	rs112589006	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr4	15797583	15797584	chr4:15797584:C:T	rs6843266	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	15933387	15933388	chr4:15933388:A:G	rs2531176	A	G	A	Sox1_MA0870.1	11	1	-	10.58506342235113	5.629668436540797	AACACTGACATTGGT
chr4	16001614	16001615	chr4:16001615:C:G	rs75884627	C	G	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	16084380	16084381	chr4:16084381:C:G	rs980608	C	G	C	Sox1_MA0870.1	13	1	-	6.615428260044089	8.080320689230167	GCCACTAGCATTGGT
chr4	16122844	16122845	chr4:16122845:G:T	rs59747831	G	T	G	Sox1_MA0870.1	26	0	-	0	0	.
chr4	16323367	16323368	chr4:16323368:A:G	rs4586928	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	16416815	16416816	chr4:16416816:A:G	rs2872340	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr4	16416837	16416838	chr4:16416838:T:C	rs2036358	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	16788291	16788292	chr4:16788292:C:T	rs17757703	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr4	16860866	16860867	chr4:16860867:A:G	rs16894096	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	16865804	16865805	chr4:16865805:T:C	rs4698515	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	16952512	16952513	chr4:16952513:C:A	rs115400508	C	A	C	Sox1_MA0870.1	29	0	+	0	0	.
chr4	16967604	16967605	chr4:16967605:C:T	rs34967214	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr4	17142035	17142036	chr4:17142036:T:G	rs1357230	T	G	.	Sox1_MA0870.1	3	1	-	6.421451226361242	1.3356863013230669	CACAATAATAGTGGT
chr4	17391747	17391748	chr4:17391748:T:C	rs4698186	T	C	C	Sox1_MA0870.1	9	1	-	4.922434910826315	-1.9863198684889052	CACACTTACATTCTG
chr4	17535535	17535536	chr4:17535536:T:G	rs2518649	T	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr4	18077893	18077894	chr4:18077894:G:A	rs9291662	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	18150382	18150383	chr4:18150383:C:A	rs76002472	C	A	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	18532220	18532221	chr4:18532221:A:G	rs12644833	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	18571845	18571846	chr4:18571846:G:A	rs75287310	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr4	18749640	18749641	chr4:18749641:A:G	rs1568229	A	G	G	Sox1_MA0870.1	28	0	-	0	0	.
chr4	18972202	18972203	chr4:18972203:A:G	rs1377156	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	19098295	19098296	chr4:19098296:T:C	rs207296	T	C	C	Sox1_MA0870.1	27	0	+	0	0	.
chr4	19327618	19327619	chr4:19327619:C:A	rs4493529	C	A	C	Sox1_MA0870.1	23	0	-	0	0	.
chr4	19373942	19373943	chr4:19373943:C:T	rs34517311	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	19777166	19777167	chr4:19777167:T:C	rs35289167	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	20038078	20038079	chr4:20038079:C:T	rs4470624	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr4	20060706	20060707	chr4:20060707:A:T	rs139292157	A	T	T	Sox1_MA0870.1	24	0	+	0	0	.
chr4	20193623	20193624	chr4:20193624:G:A	rs73803277	G	A	G	Sox1_MA0870.1	0	1	-	4.412050813247484	3.7096740561000034	CCCAATTCCATAGTT
chr4	20194201	20194202	chr4:20194202:T:C	rs1158700027	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr4	20194206	20194207	chr4:20194207:C:T	rs677198	C	T	T	Sox1_MA0870.1	12	1	-	9.041011987927874	2.132257208612653	AGCAATATCAGTGTA
chr4	20258404	20258405	chr4:20258405:T:G	rs2322459	T	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr4	20258414	20258415	chr4:20258415:G:A	rs2874800	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr4	20324036	20324037	chr4:20324037:A:C	rs35915704	A	C	A	Sox1_MA0870.1	3	1	+	12.226845696135696	7.141080771097522	AACAATAAGATTGTG
chr4	20529357	20529358	chr4:20529358:G:A	rs2168801	G	A	G	Sox1_MA0870.1	7	1	-	7.107230922741737	7.095401870193363	ATAAATACCATTGTT
chr4	20754383	20754384	chr4:20754384:G:A	rs2291530	G	A	G	Sox1_MA0870.1	2	1	-	7.59992649599479	0.6911717166795698	AACAGTAACATTGAT
chr4	20847301	20847302	chr4:20847302:G:A	rs7682014	G	A	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	21544593	21544594	chr4:21544594:C:T	rs870368	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr4	21579759	21579760	chr4:21579760:T:G	rs112062758	T	G	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr4	21604946	21604947	chr4:21604947:T:G	rs17485906	T	G	T	Sox1_MA0870.1	7	1	+	4.046552530629772	4.09116408291768	GACATTTTCAGTGTA
chr4	21629484	21629485	chr4:21629485:T:C	rs10006027	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr4	21845358	21845359	chr4:21845359:A:G	rs12650691	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr4	21922919	21922920	chr4:21922920:T:G	rs13103030	T	G	T	Sox1_MA0870.1	9	1	-	7.149919804018353	0.2411650247031315	TATAATAACATTGTG
chr4	21986590	21986591	chr4:21986591:G:T	rs997045426	G	T	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	22291769	22291770	chr4:22291770:C:T	rs1159483	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr4	22427969	22427970	chr4:22427970:T:C	rs1841825	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr4	22595844	22595845	chr4:22595845:A:G	rs114960735	A	G	A	Sox1_MA0870.1	5	1	-	4.40703235623435	-2.496132402413409	ACCAATAGCTGTGTT
chr4	22609474	22609475	chr4:22609475:T:C	rs6838110	T	C	c	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	22697261	22697262	chr4:22697262:A:G	rs16872987	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr4	22815039	22815040	chr4:22815040:A:G	rs1485822	A	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr4	23290799	23290800	chr4:23290800:T:C	rs4519787	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr4	23332351	23332352	chr4:23332352:A:G	rs61792105	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr4	23805437	23805438	chr4:23805438:T:G	rs28750249	T	G	T	Sox1_MA0870.1	25	0	+	0	0	.
chr4	23877117	23877118	chr4:23877118:T:C	rs55913146	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr4	23925205	23925206	chr4:23925206:C:A	rs79067637	C	A	C	Sox1_MA0870.1	15	0	+	0	0	.
chr4	24009700	24009701	chr4:24009701:G:A	rs7672305	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	24009717	24009718	chr4:24009718:C:T	rs7671972	C	T	C	Sox1_MA0870.1	8	1	+	4.040007618129176	-0.14160192850810516	CACAACAACATTGGA
chr4	24274572	24274573	chr4:24274573:C:G	rs116869778	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	24402432	24402433	chr4:24402433:G:A	rs59129277	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr4	24604631	24604632	chr4:24604632:A:G	rs13120554	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	24725959	24725960	chr4:24725960:T:C	rs4697478	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	24820353	24820354	chr4:24820354:T:C	rs800454	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr4	24885449	24885450	chr4:24885450:T:C	rs140263854	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr4	25013893	25013894	chr4:25013894:A:G	rs7687614	A	G	G	Sox1_MA0870.1	6	1	+	3.99903608563656	2.4604293924958416	GGCACTAGCAGTGCC
chr4	25056609	25056610	chr4:25056610:A:G	rs759245	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	25161506	25161507	chr4:25161507:T:C	chr4:25161507:T:C	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	25313515	25313516	chr4:25313516:G:A	chr4:25313516:G:A	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr4	25440571	25440572	chr4:25440572:T:C	rs189874785	T	C	T	Sox1_MA0870.1	10	1	+	5.179352718447264	-1.6293443656890694	AGCCCTTCCATTGTT
chr4	25467584	25467585	chr4:25467585:C:T	rs11727058	C	T	c	Sox1_MA0870.1	22	0	-	0	0	.
chr4	25770350	25770351	chr4:25770351:C:T	rs6448402	C	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	25861604	25861605	chr4:25861605:A:C	chr4:25861605:A:C	A	C	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	25901144	25901145	chr4:25901145:A:G	rs9291475	A	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr4	25907296	25907297	chr4:25907297:A:G	rs6818008	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	25938024	25938025	chr4:25938025:T:A	rs143499469	T	A	T	Sox1_MA0870.1	23	0	-	0	0	.
chr4	25938847	25938848	chr4:25938848:T:C	rs2045330	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr4	26003614	26003615	chr4:26003615:A:G	rs17684918	A	G	a	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	26022134	26022135	chr4:26022135:C:G	rs115286901	C	G	C	Sox1_MA0870.1	30	0	+	0	0	.
chr4	26075810	26075811	chr4:26075811:A:G	rs6448430	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	26206633	26206634	chr4:26206634:G:A	rs528700663	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr4	26273824	26273825	chr4:26273825:T:C	rs16878236	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr4	26576374	26576375	chr4:26576375:G:T	rs76971433	G	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr4	26782659	26782660	chr4:26782660:A:G	rs7674636	A	G	A	Sox1_MA0870.1	10	1	-	3.239235432402465	-3.569461651733869	AACACTGGCATAGCC
chr4	26821375	26821376	chr4:26821376:A:G	rs6856464	A	G	C	Sox1_MA0870.1	3	1	+	7.176312137739451	0.275722470542224	ACCATTAACATTGTT
chr4	26887029	26887030	chr4:26887030:G:A	rs80197589	G	A	G	Sox1_MA0870.1	5	1	+	6.127943175146523	8.011977920483748	ATCAAGTTCATTGTT
chr4	27094521	27094522	chr4:27094522:C:T	rs56043656	C	T	C	Sox1_MA0870.1	7	1	+	8.564957297542849	8.553128244994475	AACCATACCATTGGT
chr4	27121324	27121325	chr4:27121325:C:T	rs969949	C	T	T	Sox1_MA0870.1	6	1	-	3.229203422599617	4.7678101157403345	CACAAGGGCAGTGCT
chr4	27252468	27252469	chr4:27252469:A:C	rs7356206	A	C	C	Sox1_MA0870.1	1	1	+	5.847482314559516	2.078341929715016	GACTAAAACATTGTT
chr4	27702599	27702600	chr4:27702600:G:T	rs6448532	G	T	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	28092596	28092597	chr4:28092597:G:T	rs28539715	G	T	G	Sox1_MA0870.1	14	1	+	6.417708153621213	8.143390241339317	AACAATACCAGTTTG
chr4	28209189	28209190	chr4:28209190:T:C	rs10009905	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr4	28421330	28421331	chr4:28421331:C:T	rs2309790	C	T	t	Sox1_MA0870.1	-5	0	+	0	0	.
chr4	29153719	29153720	chr4:29153720:C:G	rs73112426	C	G	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	29407415	29407416	chr4:29407416:A:T	rs260121	A	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr4	30463158	30463159	chr4:30463159:C:T	rs73216835	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	30716710	30716711	chr4:30716711:A:G	rs9291546	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr4	30788882	30788883	chr4:30788883:C:T	rs35154721	C	T	T	Sox1_MA0870.1	19	0	+	0	0	.
chr4	31275493	31275494	chr4:31275494:A:G	rs6815632	A	G	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	31311729	31311730	chr4:31311730:C:T	rs4566619	C	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	31383830	31383831	chr4:31383831:A:G	rs6830945	A	G	G	Sox1_MA0870.1	20	0	+	0	0	.
chr4	31963879	31963880	chr4:31963880:C:T	rs1916298	C	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr4	32243892	32243893	chr4:32243893:T:C	rs6831078	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	32326978	32326979	chr4:32326979:A:C	rs7682210	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr4	32693071	32693072	chr4:32693072:G:A	rs36004190	G	A	G	Sox1_MA0870.1	0	1	-	4.0687362841882795	3.3663595270407973	CGCAATAACAATGTC
chr4	32698440	32698441	chr4:32698441:C:T	rs56394960	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	32996623	32996624	chr4:32996624:T:C	rs66471116	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr4	34633436	34633437	chr4:34633437:T:C	rs11947871	T	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr4	34719304	34719305	chr4:34719305:G:A	rs1511856	G	A	A	Sox1_MA0870.1	16	0	-	0	0	.
chr4	35040005	35040006	chr4:35040006:A:T	rs7669278	A	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr4	35168345	35168346	chr4:35168346:A:C	rs13133684	A	C	A	Sox1_MA0870.1	23	0	-	0	0	.
chr4	35168370	35168371	chr4:35168371:A:G	rs114362182	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	35462450	35462451	chr4:35462451:T:C	rs6819653	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	35793321	35793322	chr4:35793322:C:T	rs114453248	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr4	36025124	36025125	chr4:36025125:T:C	rs1567482	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr4	36026873	36026874	chr4:36026874:G:C	rs6856512	G	C	G	Sox1_MA0870.1	34	0	+	0	0	.
chr4	36088680	36088681	chr4:36088681:T:C	rs6531409	T	C	C	Sox1_MA0870.1	4	1	-	7.279986996302282	0.5024087421320926	CATAATAGCATTGTA
chr4	36323680	36323681	chr4:36323681:T:C	rs6855771	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr4	36414422	36414423	chr4:36414423:G:C	rs78613845	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	37101018	37101019	chr4:37101019:C:T	rs7666915	C	T	T	Sox1_MA0870.1	14	1	-	7.9043058880638295	7.728974650996785	ATCAATAGCAGTGCG
chr4	37135111	37135112	chr4:37135112:A:C	rs75738358	A	C	A	Sox1_MA0870.1	11	1	-	3.4697901490532104	-3.4329425378036214	GACACAGCCAGTGTG
chr4	37489763	37489764	chr4:37489764:T:C	rs1552021	T	C	t	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	37523321	37523322	chr4:37523322:T:C	rs2380726	T	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	37523335	37523336	chr4:37523336:C:T	rs2380727	C	T	c	Sox1_MA0870.1	2	1	+	3.483308008248962	-3.425446771066258	CACGCTGCCATTGCT
chr4	37581653	37581654	chr4:37581654:C:T	rs6846773	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	37693338	37693339	chr4:37693339:A:G	rs1834346	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr4	37760947	37760948	chr4:37760948:T:G	rs75848821	T	G	G	Sox1_MA0870.1	1	1	-	4.135305075595376	0.3661646907508751	CACAATTGCATAGCA
chr4	37852630	37852631	chr4:37852631:G:A	rs73808089	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr4	37976111	37976112	chr4:37976112:A:G	rs2381134	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	38165431	38165432	chr4:38165432:A:G	rs13139753	A	G	A	Sox1_MA0870.1	1	1	-	4.265138712425507	3.773282574742149	CTCACAGCCATTGTT
chr4	38376134	38376135	chr4:38376135:G:A	rs1487623	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	38605311	38605312	chr4:38605312:C:T	rs74669155	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr4	38832524	38832525	chr4:38832525:C:G	rs114601407	C	G	G	Sox1_MA0870.1	8	1	-	7.893662588392526	11.664165581292863	AACAATGTGATTGCA
chr4	38856052	38856053	chr4:38856053:T:C	rs17616475	T	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	38859286	38859287	chr4:38859287:C:A	rs58956533	C	A	C	Sox1_MA0870.1	14	1	-	4.307459538700694	6.033141626418798	ATCCCTTGCATTGTG
chr4	38859302	38859303	chr4:38859303:T:C	rs55868291	T	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	38925238	38925239	chr4:38925239:C:T	rs17429556	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr4	39178796	39178797	chr4:39178797:T:G	rs1451821	T	G	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	39697254	39697255	chr4:39697255:A:T	rs142886097	A	T	A	Sox1_MA0870.1	17	0	-	0	0	.
chr4	39864634	39864635	chr4:39864635:T:C	rs78610582	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr4	40093670	40093671	chr4:40093671:C:T	rs28829300	C	T	C	Sox1_MA0870.1	12	1	-	3.5562932368642954	-3.3524615424509254	GACAGTGCCATTGCA
chr4	40179684	40179685	chr4:40179685:A:G	rs73229764	A	G	G	Sox1_MA0870.1	10	1	-	4.526261310933494	-2.2824357732028404	CAAAATTACATTGCA
chr4	40245214	40245215	chr4:40245215:T:A	rs58297725	T	A	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	40381541	40381542	chr4:40381542:G:C	rs59933647	G	C	g	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	40659470	40659471	chr4:40659471:A:G	rs180940662	A	G	A	Sox1_MA0870.1	3	1	+	9.681905598763368	2.7813159315661435	GCCACTTACATTGTT
chr4	40924026	40924027	chr4:40924027:C:T	rs756116586	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	41324766	41324767	chr4:41324767:G:T	rs1840101	G	T	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr4	41358718	41358719	chr4:41358719:A:T	rs56141185	A	T	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr4	41550883	41550884	chr4:41550884:C:T	rs7679107	C	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr4	41670741	41670742	chr4:41670742:C:T	rs2289342	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	41670753	41670754	chr4:41670754:A:T	rs555447284	A	T	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	41852457	41852458	chr4:41852458:A:T	rs7662555	A	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr4	42104520	42104521	chr4:42104521:G:C	rs6832890	G	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	42247803	42247804	chr4:42247804:T:A	rs7673565	T	A	T	Sox1_MA0870.1	33	0	-	0	0	.
chr4	42267089	42267090	chr4:42267090:C:G	rs1843924	C	G	C	Sox1_MA0870.1	23	0	-	0	0	.
chr4	42311830	42311831	chr4:42311831:C:A	rs79370584	C	A	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr4	42417604	42417605	chr4:42417605:G:C	rs73235559	G	C	G	Sox1_MA0870.1	4	1	-	7.318856369672982	2.498091050128011	AACACTGACATTTTT
chr4	42646002	42646003	chr4:42646003:A:G	rs2575472	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr4	42646023	42646024	chr4:42646024:C:T	rs115229687	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	42917338	42917339	chr4:42917339:G:T	rs1450904	G	T	G	Sox1_MA0870.1	2	1	-	5.11238349385932	-1.796371285455901	CACAATCTCATTGGA
chr4	43252112	43252113	chr4:43252113:A:G	rs1013813329	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	43709668	43709669	chr4:43709669:C:A	rs7439917	C	A	c	Sox1_MA0870.1	2	1	+	7.168147704789224	0.25939292547400317	AACAATTAAATTGCC
chr4	44553524	44553525	chr4:44553525:G:A	rs1548043	G	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr4	44848842	44848843	chr4:44848843:A:G	rs4267769	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr4	44957444	44957445	chr4:44957445:G:A	rs28862974	G	A	G	Sox1_MA0870.1	0	1	-	6.528362551261814	5.8259857941143345	CACAATGACCTTGTC
chr4	45151292	45151293	chr4:45151293:C:T	rs10222856	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr4	45275742	45275743	chr4:45275743:G:A	rs7689840	G	A	A	Sox1_MA0870.1	2	1	-	6.658391602079304	-0.25036317723591694	GACAATTCCAATGTC
chr4	45898181	45898182	chr4:45898182:C:T	rs7690208	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr4	46931996	46931997	chr4:46931997:T:G	rs12508654	T	G	T	Sox1_MA0870.1	23	0	-	0	0	.
chr4	47085730	47085731	chr4:47085731:G:A	rs114081655	G	A	g	Sox1_MA0870.1	-1	0	-	0	0	.
chr4	47427388	47427389	chr4:47427389:A:C	rs76065978	A	C	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr4	47679991	47679992	chr4:47679992:A:C	rs10517194	A	C	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	47733485	47733486	chr4:47733486:G:A	rs17601663	G	A	.	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	47816010	47816011	chr4:47816011:T:G	rs17601719	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	47961773	47961774	chr4:47961774:T:C	rs12512437	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr4	48131712	48131713	chr4:48131713:A:G	rs10027991	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	48175726	48175727	chr4:48175727:A:G	rs7695902	A	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr4	48254990	48254991	chr4:48254991:C:G	rs12504870	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	48309352	48309353	chr4:48309353:C:T	rs379323	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	48329832	48329833	chr4:48329833:A:G	rs309867	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr4	48375844	48375845	chr4:48375845:A:G	rs75395618	A	G	a	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	48431279	48431280	chr4:48431280:C:T	rs78233102	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	48477100	48477101	chr4:48477101:A:C	rs6821909	A	C	A	Sox1_MA0870.1	24	0	-	0	0	.
chr4	49112334	49112335	chr4:49112335:T:A	chr4:49112335:T:A	T	A	.	Sox1_MA0870.1	32	0	+	0	0	.
chr4	49147805	49147806	chr4:49147806:G:C	rs183775288	G	C	.	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	49150279	49150280	chr4:49150280:A:T	rs111215675	A	T	.	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	49150319	49150320	chr4:49150320:T:A	rs62646780	T	A	.	Sox1_MA0870.1	29	0	+	0	0	.
chr4	49510956	49510957	chr4:49510957:A:G	rs6599465	A	G	.	Sox1_MA0870.1	16	0	+	0	0	.
chr4	49710485	49710486	chr4:49710486:T:C	chr4:49710486:T:C	T	C	.	Sox1_MA0870.1	-20	0	+	0	0	.
chr4	49710516	49710517	chr4:49710517:T:A	rs1420536961	T	A	.	Sox1_MA0870.1	11	1	+	7.335433139193261	0.4327004523364286	CACAATATCAATGTA
chr4	51842999	51843000	chr4:51843000:A:C	rs73138670	A	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	51843001	51843002	chr4:51843002:T:C	rs774843137	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	51843007	51843008	chr4:51843008:G:A	chr4:51843008:G:A	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr4	52127626	52127627	chr4:52127627:G:A	rs59191369	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	52158206	52158207	chr4:52158207:G:A	rs17085552	G	A	g	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	52483416	52483417	chr4:52483417:T:C	rs10023109	T	C	C	Sox1_MA0870.1	7	1	+	8.523706200969642	8.535535253518013	AACAATTTCAGTGGA
chr4	52483424	52483425	chr4:52483425:G:C	rs145630090	G	C	G	Sox1_MA0870.1	15	0	+	0	0	.
chr4	52788625	52788626	chr4:52788626:G:A	rs4242019	G	A	A	Sox1_MA0870.1	30	0	-	0	0	.
chr4	52824912	52824913	chr4:52824913:C:T	rs556066841	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr4	52824913	52824914	chr4:52824914:G:A	rs114904649	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr4	52839408	52839409	chr4:52839409:C:T	rs6858566	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	52839409	52839410	chr4:52839410:G:A	rs76514671	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	53012984	53012985	chr4:53012985:A:G	rs10012324	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	53379331	53379332	chr4:53379332:A:G	rs10011631	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	53596784	53596785	chr4:53596785:C:T	rs1369351	C	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	53622857	53622858	chr4:53622858:A:G	rs111253710	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	53635263	53635264	chr4:53635264:T:C	rs3942650	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr4	53928175	53928176	chr4:53928176:G:A	rs61277036	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	53988209	53988210	chr4:53988210:C:A	rs13134590	C	A	C	Sox1_MA0870.1	12	1	-	5.3780861376555364	-1.530668641659684	AATACTGCCATTGTC
chr4	54014884	54014885	chr4:54014885:T:C	rs958852619	T	C	T	Sox1_MA0870.1	5	1	+	7.034544375734638	0.13137961708687962	AAAAATGACAGTGTT
chr4	54229231	54229232	chr4:54229232:A:G	rs1034941629	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	54278945	54278946	chr4:54278946:A:G	rs76850938	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	54403050	54403051	chr4:54403051:C:A	rs62297775	C	A	C	Sox1_MA0870.1	16	0	-	0	0	.
chr4	54515816	54515817	chr4:54515817:C:T	rs12500506	C	T	C	Sox1_MA0870.1	8	1	+	5.211369619531135	1.0297600728938514	TACTATTGCATTGCC
chr4	54625736	54625737	chr4:54625737:T:G	rs759082	T	G	T	Sox1_MA0870.1	17	0	-	0	0	.
chr4	54633271	54633272	chr4:54633272:C:G	rs113059858	C	G	C	Sox1_MA0870.1	23	0	-	0	0	.
chr4	54856298	54856299	chr4:54856299:G:A	rs61158093	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	54864386	54864387	chr4:54864387:T:G	rs1021604	T	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr4	55185126	55185127	chr4:55185127:C:T	rs144555188	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	55364951	55364952	chr4:55364952:C:T	rs7663650	C	T	C	Sox1_MA0870.1	9	1	+	4.189904379260024	4.189904379260024	AACCATGACCTTGTT
chr4	55544620	55544621	chr4:55544621:T:C	rs7667741	T	C	T	Sox1_MA0870.1	4	1	-	6.117324253454792	-0.6602540007153955	TTCAATATGATTGCT
chr4	55930655	55930656	chr4:55930656:G:T	rs34285861	G	T	G	Sox1_MA0870.1	6	1	+	5.417843044887834	5.983401022314253	AACACTGACATTTTA
chr4	56106423	56106424	chr4:56106424:A:G	rs77288397	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	56251775	56251776	chr4:56251776:T:C	rs11938331	T	C	C	Sox1_MA0870.1	14	1	-	6.307618455468808	6.482949692535852	AGCAAAAGCATTGTA
chr4	56259840	56259841	chr4:56259841:A:G	rs61000253	A	G	A	Sox1_MA0870.1	10	1	-	7.94881337837731	1.1401162942409773	CTCACTTCCATTGTA
chr4	56303970	56303971	chr4:56303971:A:G	rs62310630	A	G	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	56303971	56303972	chr4:56303972:T:C	rs74403828	T	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr4	56383108	56383109	chr4:56383109:T:A	rs13109030	T	A	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	56531940	56531941	chr4:56531941:C:A	rs4865116	C	A	C	Sox1_MA0870.1	3	1	+	4.844601828792163	9.930366753830338	CACCATTCCATTGGC
chr4	56691207	56691208	chr4:56691208:C:A	rs13141489	C	A	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	56730977	56730978	chr4:56730978:A:G	rs4864598	A	G	A	Sox1_MA0870.1	5	1	-	3.662591145362728	-3.240573613285031	CTCAATAGCTGTGTT
chr4	57044118	57044119	chr4:57044119:A:G	rs11573106	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr4	57044152	57044153	chr4:57044153:G:C	rs11573105	G	C	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr4	57080855	57080856	chr4:57080856:C:T	rs11936912	C	T	T	Sox1_MA0870.1	15	0	-	0	0	.
chr4	57285775	57285776	chr4:57285776:A:G	rs57826843	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr4	57501746	57501747	chr4:57501747:G:T	rs114683733	G	T	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr4	57607958	57607959	chr4:57607959:T:C	rs112522775	T	C	T	Sox1_MA0870.1	14	1	+	5.835474294498271	4.324464890016866	CACAATAGCATTAAT
chr4	57636089	57636090	chr4:57636090:T:C	rs17088474	T	C	T	Sox1_MA0870.1	6	1	+	3.489203059088638	-0.926947228030263	AGCACTTGCAATGTT
chr4	57704579	57704580	chr4:57704580:C:T	rs35118967	C	T	T	Sox1_MA0870.1	28	0	-	0	0	.
chr4	57704615	57704616	chr4:57704616:T:C	rs35095836	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	57906093	57906094	chr4:57906094:C:T	rs9992403	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr4	58091023	58091024	chr4:58091024:C:G	rs2660951	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr4	58209036	58209037	chr4:58209037:A:G	rs116770522	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr4	58349632	58349633	chr4:58349633:A:G	rs1879758	A	G	G	Sox1_MA0870.1	29	0	-	0	0	.
chr4	58349695	58349696	chr4:58349696:C:T	rs73190042	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr4	58780985	58780986	chr4:58780986:G:A	rs62302978	G	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	59200346	59200347	chr4:59200347:A:G	rs4860419	A	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr4	59712543	59712544	chr4:59712544:A:C	rs1507129	A	C	A	Sox1_MA0870.1	12	1	-	4.41799368946412	11.32674846877934	AGCAATAGCATTTTA
chr4	59938462	59938463	chr4:59938463:A:T	rs72637562	A	T	T	Sox1_MA0870.1	3	1	+	6.863914966392339	1.3496196603150028	AACACTTTCAGTGAA
chr4	60223119	60223120	chr4:60223120:A:G	rs76121733	A	G	A	Sox1_MA0870.1	4	1	+	5.170758318268102	-1.606819935902086	AAGAATAGCATTGAA
chr4	60562818	60562819	chr4:60562819:G:A	rs1866498	G	A	G	Sox1_MA0870.1	13	1	-	8.339700067370302	10.517355364821297	AACAATAGCAATGCT
chr4	60562851	60562852	chr4:60562852:T:A	rs17090190	T	A	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	61459697	61459698	chr4:61459698:A:C	rs10032317	A	C	A	Sox1_MA0870.1	32	0	+	0	0	.
chr4	62706303	62706304	chr4:62706304:T:G	rs72630526	T	G	T	Sox1_MA0870.1	16	0	-	0	0	.
chr4	62940469	62940470	chr4:62940470:G:C	rs6850291	G	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	63528737	63528738	chr4:63528738:C:T	rs12645084	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr4	63653203	63653204	chr4:63653204:G:A	rs921901	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr4	63873692	63873693	chr4:63873693:T:C	rs984927947	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	63906928	63906929	chr4:63906929:T:C	rs1349182	T	C	C	Sox1_MA0870.1	17	0	-	0	0	.
chr4	64359588	64359589	chr4:64359589:C:T	rs17084731	C	T	C	Sox1_MA0870.1	8	1	+	5.32817720720709	1.1465676605698065	AACATTGACATTGCA
chr4	64448124	64448125	chr4:64448125:A:G	rs72640359	A	G	a	Sox1_MA0870.1	29	0	+	0	0	.
chr4	64448127	64448128	chr4:64448128:G:A	rs115751970	G	A	g	Sox1_MA0870.1	32	0	+	0	0	.
chr4	64884079	64884080	chr4:64884080:G:A	rs10011900	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr4	65853329	65853330	chr4:65853330:C:T	rs17756441	C	T	C	Sox1_MA0870.1	12	1	-	13.385953856342045	6.477199077026825	TACACTATCATTGTT
chr4	65932651	65932652	chr4:65932652:C:T	rs11131629	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	66976428	66976429	chr4:66976429:C:T	rs6810682	C	T	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	67091858	67091859	chr4:67091859:C:A	rs6552063	C	A	C	Sox1_MA0870.1	29	0	+	0	0	.
chr4	67206062	67206063	chr4:67206063:A:G	rs13151209	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	67375362	67375363	chr4:67375363:A:G	rs920482	A	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr4	67521584	67521585	chr4:67521585:T:A	rs115587029	T	A	T	Sox1_MA0870.1	1	1	-	7.813148614977728	4.535864367816591	CACACTAGCAGTGCA
chr4	67725533	67725534	chr4:67725534:A:G	rs2630489	A	G	G	Sox1_MA0870.1	11	1	-	5.6863332315412185	0.7309382457308848	TACTATATCAGTGTA
chr4	67886022	67886023	chr4:67886023:G:A	rs77674053	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr4	67961859	67961860	chr4:67961860:G:A	rs4260588	G	A	G	Sox1_MA0870.1	2	1	-	11.135255866109485	4.226501086794265	GTCAATGCCATTGTT
chr4	67996243	67996244	chr4:67996244:C:T	rs1438407	C	T	c	Sox1_MA0870.1	12	1	-	14.761051340481053	7.852296561165833	CACAATAACATTGTG
chr4	68404750	68404751	chr4:68404751:C:A	rs141729907	C	A	c	Sox1_MA0870.1	27	0	+	0	0	.
chr4	68502546	68502547	chr4:68502547:C:T	rs35517288	C	T	c	Sox1_MA0870.1	8	1	+	6.449487017915491	2.2678774712782084	CACAATTCCATTATG
chr4	68522727	68522728	chr4:68522728:A:C	rs34138969	A	C	a	Sox1_MA0870.1	12	1	-	4.92957562529074	11.83833040460596	ATCAATACCATTTCT
chr4	68577533	68577534	chr4:68577534:C:T	rs6829482	C	T	c	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	68774095	68774096	chr4:68774096:T:C	rs4694324	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	69383420	69383421	chr4:69383421:G:A	rs112361767	G	A	.	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	69383426	69383427	chr4:69383427:A:C	rs74482239	A	C	.	Sox1_MA0870.1	-13	0	-	0	0	.
chr4	69728357	69728358	chr4:69728358:A:T	rs13115602	A	T	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr4	69883588	69883589	chr4:69883589:G:A	rs12505973	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr4	70089245	70089246	chr4:70089246:C:T	rs111865481	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	70144148	70144149	chr4:70144149:A:T	rs10003876	A	T	A	Sox1_MA0870.1	16	0	-	0	0	.
chr4	70241646	70241647	chr4:70241647:T:A	rs17148376	T	A	A	Sox1_MA0870.1	13	1	-	4.150965301281461	7.49649132787062	CCCACTGACATTGAG
chr4	70249335	70249336	chr4:70249336:T:A	rs3775740	T	A	T	Sox1_MA0870.1	26	0	+	0	0	.
chr4	70249342	70249343	chr4:70249343:G:A	rs3775739	G	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr4	70356465	70356466	chr4:70356466:G:A	rs61271106	G	A	G	Sox1_MA0870.1	10	1	+	7.203124025364547	2.635551869791774	AACAATTGCCGTGTT
chr4	70383723	70383724	chr4:70383724:T:A	rs10000799	T	A	T	Sox1_MA0870.1	27	0	+	0	0	.
chr4	70511514	70511515	chr4:70511515:G:C	rs28606581	G	C	C	Sox1_MA0870.1	20	0	+	0	0	.
chr4	70885343	70885344	chr4:70885344:G:A	chr4:70885344:G:A	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr4	70992404	70992405	chr4:70992405:A:G	rs7689093	A	G	A	Sox1_MA0870.1	4	1	+	9.106441071280289	2.3288628171101013	CCCAATTGCAGTGTT
chr4	71029223	71029224	chr4:71029224:A:G	rs77592672	A	G	a	Sox1_MA0870.1	10	1	-	10.439697285286254	3.6310002011499227	CACAATGCCATTGCA
chr4	71161075	71161076	chr4:71161076:G:A	rs16845943	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr4	71189696	71189697	chr4:71189697:C:T	rs75495490	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr4	71538625	71538626	chr4:71538626:G:A	rs72651805	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr4	72109750	72109751	chr4:72109751:A:G	rs115815780	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr4	72110935	72110936	chr4:72110936:T:C	rs115976041	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr4	72513653	72513654	chr4:72513654:T:A	rs810929	T	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr4	72817173	72817174	chr4:72817174:A:G	rs371949483	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	72843458	72843459	chr4:72843459:G:A	rs315311	G	A	G	Sox1_MA0870.1	12	1	+	7.038939688920771	0.1301849096055503	AACAATTGGATTGGA
chr4	72876978	72876979	chr4:72876979:C:A	rs150057499	C	A	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	72931510	72931511	chr4:72931511:T:G	rs6446907	T	G	G	Sox1_MA0870.1	0	1	-	3.9596186583700446	2.7233213098150637	AACAAAGGCAATGTT
chr4	73274881	73274882	chr4:73274882:C:A	rs57623299	C	A	C	Sox1_MA0870.1	12	1	-	4.113179605266229	-2.795575174048992	GACAATAACAGCGAG
chr4	73537072	73537073	chr4:73537073:G:T	rs4574378	G	T	A	Sox1_MA0870.1	8	1	-	5.14412228780927	-0.749047366508943	ACCAATAACCTTGTA
chr4	73609791	73609792	chr4:73609792:C:T	rs62312138	C	T	C	Sox1_MA0870.1	8	1	+	4.390460111678831	0.20885056504154875	GTCAGTGGCATTGTT
chr4	73662060	73662061	chr4:73662061:T:G	rs1247684	T	G	T	Sox1_MA0870.1	22	0	-	0	0	.
chr4	73717507	73717508	chr4:73717508:C:A	rs74446360	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	73766723	73766724	chr4:73766724:G:A	rs55704092	G	A	G	Sox1_MA0870.1	13	1	-	3.7752942933782347	5.952949590829229	CACCCTGTCATTGCC
chr4	73865560	73865561	chr4:73865561:G:T	rs3117598	G	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr4	73903083	73903084	chr4:73903084:C:T	rs148819125	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr4	74319043	74319044	chr4:74319044:A:G	rs16850918	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr4	74504521	74504522	chr4:74504522:A:G	rs3113928	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	74504558	74504559	chr4:74504559:A:T	rs3113929	A	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr4	74757157	74757158	chr4:74757158:C:T	rs9307117	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr4	74875141	74875142	chr4:74875142:T:C	rs16999972	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr4	75375594	75375595	chr4:75375595:G:A	rs1532893	G	A	A	Sox1_MA0870.1	10	1	+	5.027911108797225	0.46033895322445273	AACCATAACAGTGGG
chr4	75468888	75468889	chr4:75468889:G:C	rs6825648	G	C	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	75573532	75573533	chr4:75573533:G:C	rs573268652	G	C	G	Sox1_MA0870.1	19	0	-	0	0	.
chr4	76238842	76238843	chr4:76238843:G:A	rs1441917	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	76388940	76388941	chr4:76388941:A:G	rs2136051	A	G	A	Sox1_MA0870.1	9	1	+	5.3315327446042335	-1.5772220347109864	AACCATAGCATTATT
chr4	76434826	76434827	chr4:76434827:A:G	rs57758833	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr4	76434861	76434862	chr4:76434862:A:C	rs60642432	A	C	a	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	76447039	76447040	chr4:76447040:C:T	rs17001966	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr4	76526839	76526840	chr4:76526840:G:A	rs17254511	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	76526845	76526846	chr4:76526846:T:G	rs57001764	T	G	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	76554766	76554767	chr4:76554767:G:A	rs549744427	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr4	76588288	76588289	chr4:76588289:A:G	rs56857614	A	G	a	Sox1_MA0870.1	6	1	+	4.829125065932282	3.2905183727915643	AACAATATCATTAGA
chr4	76591341	76591342	chr4:76591342:C:T	rs1349755918	C	T	t	Sox1_MA0870.1	33	0	-	0	0	.
chr4	76607392	76607393	chr4:76607393:T:C	rs76941969	T	C	t	Sox1_MA0870.1	27	0	+	0	0	.
chr4	76664445	76664446	chr4:76664446:A:G	chr4:76664446:A:G	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr4	76726628	76726629	chr4:76726629:A:G	rs344131	A	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr4	77007199	77007200	chr4:77007200:A:G	rs72858695	A	G	A	Sox1_MA0870.1	3	1	+	6.4878595383224855	-0.4127301288747399	CACAAGTGCATTGTG
chr4	77007204	77007205	chr4:77007205:C:T	rs141805856	C	T	C	Sox1_MA0870.1	8	1	+	6.4878595383224855	2.3062499916852026	CACAAGTGCATTGTG
chr4	77110890	77110891	chr4:77110891:T:G	rs10856951	T	G	T	Sox1_MA0870.1	30	0	+	0	0	.
chr4	77220670	77220671	chr4:77220671:C:A	rs17581744	C	A	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	77360903	77360904	chr4:77360904:A:G	rs77873720	A	G	A	Sox1_MA0870.1	13	1	-	4.336485310591239	2.158830013140244	TACAATAGCAGTATA
chr4	77395162	77395163	chr4:77395163:A:G	rs28858493	A	G	g	Sox1_MA0870.1	5	1	-	8.17054848088825	1.267383722240492	CACAGTGACATTGTT
chr4	78293657	78293658	chr4:78293658:T:C	rs72864583	T	C	T	Sox1_MA0870.1	10	1	+	8.52476161131814	1.7160645271818074	GACAATAGGATTGCC
chr4	78437854	78437855	chr4:78437855:C:G	rs2903470	C	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr4	78510291	78510292	chr4:78510292:C:T	rs28449192	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	78510301	78510302	chr4:78510302:G:A	rs28721400	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	78565905	78565906	chr4:78565906:A:C	rs6533780	A	C	A	Sox1_MA0870.1	3	1	+	4.032650858853321	-1.0531140661848526	TACAAGACCAGTGCT
chr4	78638268	78638269	chr4:78638269:C:T	rs7668240	C	T	C	Sox1_MA0870.1	13	1	+	4.017468381263718	6.1951236787147135	AACACTCCCAGTGCC
chr4	78721117	78721118	chr4:78721118:C:T	rs17003426	C	T	C	Sox1_MA0870.1	12	1	-	3.9151783272018945	-2.9935764521133263	GACAATGCCAATGCC
chr4	78845465	78845466	chr4:78845466:A:G	rs17003465	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr4	79153633	79153634	chr4:79153634:C:G	rs111753031	C	G	C	Sox1_MA0870.1	0	1	-	4.584199366466662	4.6900251607184344	GACATAAACATTGTT
chr4	79197530	79197531	chr4:79197531:C:G	rs112062809	C	G	C	Sox1_MA0870.1	25	0	-	0	0	.
chr4	79497476	79497477	chr4:79497477:G:A	rs1971838	G	A	G	Sox1_MA0870.1	8	1	-	7.407382319989004	3.2257727733517214	ATCCATATCATTGTC
chr4	79585990	79585991	chr4:79585991:C:A	rs116186422	C	A	C	Sox1_MA0870.1	8	1	+	7.1244678573242854	1.2312982030060717	AACCATATCATTGAG
chr4	79622403	79622404	chr4:79622404:C:A	rs13133572	C	A	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr4	79650873	79650874	chr4:79650874:T:G	rs4368633	T	G	G	Sox1_MA0870.1	31	0	-	0	0	.
chr4	79651297	79651298	chr4:79651298:T:C	rs779534713	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	79963039	79963040	chr4:79963040:G:C	rs6838578	G	C	G	Sox1_MA0870.1	4	1	-	3.927116105863858	-0.8936492136811142	CACACTGCCATTATG
chr4	80012480	80012481	chr4:80012481:A:G	rs141969892	A	G	A	Sox1_MA0870.1	10	1	-	7.921148383730396	1.112451299594063	AACTCTACCATTGTA
chr4	80078916	80078917	chr4:80078917:A:G	rs7693145	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr4	80172759	80172760	chr4:80172760:A:C	rs1316430	A	C	A	Sox1_MA0870.1	22	0	+	0	0	.
chr4	80225479	80225480	chr4:80225480:T:A	rs1379702	T	A	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	80330043	80330044	chr4:80330044:C:T	rs6811219	C	T	T	Sox1_MA0870.1	7	1	+	8.767885006254055	8.756055953705683	AACCATGCCATTGTA
chr4	80611608	80611609	chr4:80611609:A:G	rs146027887	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	81284094	81284095	chr4:81284095:A:G	rs139063337	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr4	81397869	81397870	chr4:81397870:A:C	rs7687154	A	C	A	Sox1_MA0870.1	24	0	-	0	0	.
chr4	81469178	81469179	chr4:81469179:T:C	rs11932335	T	C	T	Sox1_MA0870.1	4	1	-	4.433043121455743	-2.344535132714444	GCCAATTGCACTGTT
chr4	81474055	81474056	chr4:81474056:G:A	rs116611383	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr4	81481295	81481296	chr4:81481296:T:C	rs17558376	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr4	81508635	81508636	chr4:81508636:T:C	rs1043554919	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	81512194	81512195	chr4:81512195:A:T	rs895087	A	T	T	Sox1_MA0870.1	20	0	-	0	0	.
chr4	81722097	81722098	chr4:81722098:C:A	rs7697168	C	A	C	Sox1_MA0870.1	22	0	-	0	0	.
chr4	82230489	82230490	chr4:82230490:T:C	chr4:82230490:T:C	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr4	82621040	82621041	chr4:82621041:C:G	rs11947120	C	G	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	82706429	82706430	chr4:82706430:T:C	rs4693491	T	C	T	Sox1_MA0870.1	5	1	+	4.216173864600139	-2.6869908940476193	ATCACTTGCATGGTT
chr4	82769242	82769243	chr4:82769243:C:G	rs78868620	C	G	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	82785782	82785783	chr4:82785783:G:T	rs145382402	G	T	T	Sox1_MA0870.1	4	1	-	4.338840552168566	6.295653486793784	CCCACATCCATTGTT
chr4	82785996	82785997	chr4:82785997:G:A	rs72925437	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr4	82930539	82930540	chr4:82930540:C:G	rs11724740	C	G	C	Sox1_MA0870.1	2	1	+	6.032582390125857	-0.8761723891893646	CACTATTACAGTGTG
chr4	83272884	83272885	chr4:83272885:G:T	rs6841864	G	T	T	Sox1_MA0870.1	2	1	-	3.4988309756739016	-3.4099238036413198	GACAATACCTTTGGA
chr4	83582541	83582542	chr4:83582542:A:C	rs1046042910	A	C	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	84102279	84102280	chr4:84102280:G:A	rs11930518	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr4	84366231	84366232	chr4:84366232:G:A	rs72660885	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	84683668	84683669	chr4:84683669:A:G	rs138970362	A	G	A	Sox1_MA0870.1	5	1	-	6.646177182285384	-0.2569875763623771	CACACTGGGATTGCT
chr4	85028968	85028969	chr4:85028969:C:T	rs12640378	C	T	c	Sox1_MA0870.1	7	1	+	4.235450974261226	4.223621921712852	TACACTTCGAGTGCT
chr4	85334446	85334447	chr4:85334447:A:G	rs450572	A	G	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	85422822	85422823	chr4:85422823:G:C	rs17010223	G	C	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	85437399	85437400	chr4:85437400:C:G	chr4:85437400:C:G	C	G	C	Sox1_MA0870.1	28	0	+	0	0	.
chr4	85521231	85521232	chr4:85521232:A:C	rs141735234	A	C	A	Sox1_MA0870.1	5	1	-	8.239642372191414	1.3364776135436556	AATAATAGCATTGCT
chr4	85766907	85766908	chr4:85766908:A:G	rs1966862	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	85789124	85789125	chr4:85789125:A:T	rs7684607	A	T	A	Sox1_MA0870.1	33	0	+	0	0	.
chr4	85940564	85940565	chr4:85940565:G:A	rs62305516	G	A	G	Sox1_MA0870.1	2	1	-	6.299506511741707	-0.6092482675735142	GACATTTCCATTGTA
chr4	85953274	85953275	chr4:85953275:T:C	rs346490	T	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr4	85956033	85956034	chr4:85956034:G:C	rs2665881	G	C	G	Sox1_MA0870.1	24	0	+	0	0	.
chr4	85994694	85994695	chr4:85994695:T:C	rs10003909	T	C	C	Sox1_MA0870.1	9	1	-	4.886055805924082	-2.022698973391137	CTGAATTTCATTGTT
chr4	86186360	86186361	chr4:86186361:T:G	rs17011445	T	G	G	Sox1_MA0870.1	11	1	+	5.699089028375908	-1.203643658480924	AACAATTACAGTTTA
chr4	86203424	86203425	chr4:86203425:T:G	rs79147616	T	G	T	Sox1_MA0870.1	34	0	-	0	0	.
chr4	86453422	86453423	chr4:86453423:G:A	rs72663991	G	A	G	Sox1_MA0870.1	2	1	-	3.7079943283254533	-3.200760450989766	CTCACTCCCATTGTG
chr4	87382962	87382963	chr4:87382963:A:G	rs7677036	A	G	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr4	87523517	87523518	chr4:87523518:G:A	rs17012787	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	87540789	87540790	chr4:87540790:C:T	rs78831010	C	T	C	Sox1_MA0870.1	12	1	-	4.707285635623366	-2.2014691436918534	AACAAACCCATTGCT
chr4	87559189	87559190	chr4:87559190:T:C	rs77063449	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr4	87620642	87620643	chr4:87620643:T:C	rs73840280	T	C	T	Sox1_MA0870.1	10	1	+	7.304880886829645	0.4961838026933111	GAAAATATCATTGTG
chr4	87872087	87872088	chr4:87872088:T:C	rs1381954	T	C	T	Sox1_MA0870.1	3	1	-	4.625383708883641	-2.2752059583135833	GGCAAAAGCAGTGTT
chr4	87985486	87985487	chr4:87985487:A:C	rs73841244	A	C	A	Sox1_MA0870.1	19	0	+	0	0	.
chr4	88064558	88064559	chr4:88064559:G:A	rs2725205	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr4	88106687	88106688	chr4:88106688:G:C	rs7681519	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr4	88107622	88107623	chr4:88107623:A:G	rs2054576	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	88172911	88172912	chr4:88172912:T:C	rs2622629	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	88265915	88265916	chr4:88265916:G:C	rs4693209	G	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	88740392	88740393	chr4:88740393:C:T	chr4:88740393:C:T	C	T	C	Sox1_MA0870.1	2	1	+	4.864307244382127	-2.0444475349330937	AACTATTTCAGTGCC
chr4	88818652	88818653	chr4:88818653:T:G	rs3775381	T	G	T	Sox1_MA0870.1	11	1	+	4.127378598119363	-2.775354088737469	CTCACTGACAGTGAT
chr4	88823211	88823212	chr4:88823212:C:T	rs77069696	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	88823217	88823218	chr4:88823218:C:G	rs1223326931	C	G	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	88998930	88998931	chr4:88998931:C:A	rs10516825	C	A	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	89022321	89022322	chr4:89022322:C:G	rs1795721	C	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr4	89134747	89134748	chr4:89134748:A:C	rs1398946	A	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr4	89134762	89134763	chr4:89134763:A:G	rs1398945	A	G	A	Sox1_MA0870.1	8	1	-	5.659617735087334	9.841227281724615	AAGAATTATATTGTT
chr4	89204899	89204900	chr4:89204900:T:C	rs678701	T	C	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr4	89285469	89285470	chr4:89285470:G:A	rs62304747	G	A	G	Sox1_MA0870.1	8	1	-	5.280889065735842	1.0992795190985594	GACCATGGCATTGCA
chr4	89493293	89493294	chr4:89493294:G:A	rs28463872	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	89493310	89493311	chr4:89493311:A:G	rs62305086	A	G	A	Sox1_MA0870.1	3	1	+	7.591274627736514	0.6906849605392874	GACAAAAAGATTGTT
chr4	89788442	89788443	chr4:89788443:C:T	rs115322031	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	89906931	89906932	chr4:89906932:C:T	rs116311010	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr4	89907073	89907074	chr4:89907074:T:A	chr4:89907074:T:A	T	A	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	89910849	89910850	chr4:89910850:T:C	rs7691487	T	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr4	90130370	90130371	chr4:90130371:A:C	rs115406248	A	C	A	Sox1_MA0870.1	14	1	+	5.393484232396023	5.783488152699766	GACAATAACATTTCA
chr4	90842946	90842947	chr4:90842947:G:A	rs11725878	G	A	A	Sox1_MA0870.1	19	0	-	0	0	.
chr4	90842983	90842984	chr4:90842984:C:T	rs11725824	C	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	91128146	91128147	chr4:91128147:C:G	rs6532278	C	G	C	Sox1_MA0870.1	20	0	+	0	0	.
chr4	91220404	91220405	chr4:91220405:T:C	rs11097307	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr4	91452466	91452467	chr4:91452467:A:G	rs6834106	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr4	91686286	91686287	chr4:91686287:C:A	rs73837960	C	A	C	Sox1_MA0870.1	6	1	-	3.354789927077188	3.9203479045036054	CACAGTGGCAGTGCT
chr4	91764169	91764170	chr4:91764170:C:T	rs10033467	C	T	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	91958972	91958973	chr4:91958973:C:T	rs1602073	C	T	c	Sox1_MA0870.1	24	0	-	0	0	.
chr4	93201975	93201976	chr4:93201976:G:T	rs62309156	G	T	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	93830522	93830523	chr4:93830523:A:G	rs28648558	A	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr4	94068738	94068739	chr4:94068739:T:C	rs1509948	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr4	94547931	94547932	chr4:94547932:C:T	rs28579984	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	94595099	94595100	chr4:94595100:A:G	rs62316475	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr4	94595141	94595142	chr4:94595142:C:T	rs77894892	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	94648064	94648065	chr4:94648065:A:T	rs7656545	A	T	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	95012750	95012751	chr4:95012751:C:A	chr4:95012751:C:A	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr4	95017424	95017425	chr4:95017425:G:A	rs568440380	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr4	95017441	95017442	chr4:95017442:A:G	rs10018945	A	G	G	Sox1_MA0870.1	14	1	-	12.352265196122945	10.84125579164154	CACACTAACATTGCT
chr4	95028054	95028055	chr4:95028055:T:C	rs10516957	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr4	95129821	95129822	chr4:95129822:C:T	rs187515937	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	95250529	95250530	chr4:95250530:A:G	rs34875919	A	G	A	Sox1_MA0870.1	11	1	-	7.592637235792353	2.637242249982018	GCCAAAAACATTGTT
chr4	95289569	95289570	chr4:95289570:A:T	rs6810943	A	T	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	95371981	95371982	chr4:95371982:G:A	rs79887252	G	A	G	Sox1_MA0870.1	0	1	+	8.202183506300242	9.544306649106995	GACAATTGCACTGTT
chr4	95382856	95382857	chr4:95382857:T:C	rs10461127	T	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr4	95382887	95382888	chr4:95382888:G:A	rs10461128	G	A	A	Sox1_MA0870.1	0	1	-	5.170038592883754	4.467661835736274	CACAGTAGCAGTGTA
chr4	95448662	95448663	chr4:95448663:A:T	rs17023905	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr4	95627406	95627407	chr4:95627407:A:C	rs6820560	A	C	A	Sox1_MA0870.1	4	1	+	12.707001806494878	10.750188871869662	CACAATGACAGTGTT
chr4	95801401	95801402	chr4:95801402:C:G	rs1561155	C	G	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr4	95832211	95832212	chr4:95832212:G:A	rs10212751	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr4	96002627	96002628	chr4:96002628:G:A	rs7689360	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr4	96176287	96176288	chr4:96176288:C:T	rs7661756	C	T	T	Sox1_MA0870.1	10	1	+	4.078903331776195	10.887600415912527	GACAATTTCACTGCA
chr4	96713583	96713584	chr4:96713584:G:A	rs72671960	G	A	G	Sox1_MA0870.1	11	1	-	10.399200857705303	15.354595843515636	TACAATACCATCGTT
chr4	96993886	96993887	chr4:96993887:A:G	rs72674065	A	G	A	Sox1_MA0870.1	9	1	+	6.094623138923131	-0.8141316403920904	TACAATTGCACTGTC
chr4	97279485	97279486	chr4:97279486:C:T	rs1462758	C	T	T	Sox1_MA0870.1	26	0	+	0	0	.
chr4	97396143	97396144	chr4:97396144:T:C	rs965407	T	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr4	97496534	97496535	chr4:97496535:A:G	rs141258797	A	G	A	Sox1_MA0870.1	5	1	-	4.3818872799790345	-2.521277478668725	AACCATGGCAGTGCA
chr4	98027798	98027799	chr4:98027799:A:G	rs783919	A	G	G	Sox1_MA0870.1	4	1	+	8.239642372191414	1.4620641180212266	AAGAATAGCATTGCT
chr4	98352713	98352714	chr4:98352714:G:T	rs72688415	G	T	G	Sox1_MA0870.1	16	0	+	0	0	.
chr4	98465285	98465286	chr4:98465286:C:A	rs11935895	C	A	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr4	98632085	98632086	chr4:98632086:T:C	rs72688488	T	C	T	Sox1_MA0870.1	4	1	-	7.876728990892909	1.099150736722721	CACTATTGCATTGTG
chr4	98662126	98662127	chr4:98662127:T:C	rs76489462	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr4	98939965	98939966	chr4:98939966:T:C	rs113633137	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	98995189	98995190	chr4:98995190:A:G	rs62323237	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	99179841	99179842	chr4:99179842:A:G	rs6818077	A	G	a	Sox1_MA0870.1	32	0	-	0	0	.
chr4	99405891	99405892	chr4:99405892:C:T	rs113956343	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr4	100248712	100248713	chr4:100248713:C:T	rs72688384	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr4	100248734	100248735	chr4:100248735:G:A	rs62306524	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	100446205	100446206	chr4:100446206:C:T	rs7658206	C	T	T	Sox1_MA0870.1	0	1	-	5.041984069837149	6.384107212643901	GACAAAAACAGTGCA
chr4	100604342	100604343	chr4:100604343:T:C	rs1015319546	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr4	100631719	100631720	chr4:100631720:G:A	rs4618316	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr4	101224536	101224537	chr4:101224537:C:A	rs2851005	C	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr4	101224543	101224544	chr4:101224544:G:A	rs2851006	G	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr4	101285818	101285819	chr4:101285819:C:T	rs72921877	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	101290034	101290035	chr4:101290035:T:C	rs6841711	T	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	101290064	101290065	chr4:101290065:T:C	rs2850355	T	C	T	Sox1_MA0870.1	13	1	+	5.61991661588926	3.442261318438267	GACACCAACATTGTA
chr4	101440044	101440045	chr4:101440045:G:A	rs13143896	G	A	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr4	101556921	101556922	chr4:101556922:G:A	rs76968463	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	101597361	101597362	chr4:101597362:T:C	rs142427337	T	C	T	Sox1_MA0870.1	4	1	-	5.313455998103537	-1.4641222560666511	GCCAATTTCAGTGGT
chr4	101689754	101689755	chr4:101689755:G:A	rs7695700	G	A	G	Sox1_MA0870.1	14	1	+	4.0707706751597215	3.8954394380926773	CACAACATCATTGAG
chr4	101722238	101722239	chr4:101722239:A:T	rs12649895	A	T	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr4	101722239	101722240	chr4:101722240:C:T	rs12643886	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	102246158	102246159	chr4:102246159:T:C	rs459331	T	C	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr4	104780396	104780397	chr4:104780397:G:A	rs964967118	G	A	G	Sox1_MA0870.1	7	1	-	9.389661332297386	9.377832279749013	ACCACTACCATTGCT
chr4	104780418	104780419	chr4:104780419:A:G	rs72664153	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	105127133	105127134	chr4:105127134:T:C	rs17035289	T	C	T	Sox1_MA0870.1	5	1	+	8.881188412746358	1.9780236540985987	AGCAATTAGATTGTT
chr4	105150439	105150440	chr4:105150440:T:A	rs763480	T	A	A	Sox1_MA0870.1	6	1	-	5.567736646064611	4.59468793035031	AACAATAACATTAAA
chr4	105170788	105170789	chr4:105170789:T:C	rs17430146	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr4	105606007	105606008	chr4:105606008:A:G	rs4324547	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr4	105623368	105623369	chr4:105623369:A:G	rs3796920	A	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr4	105710712	105710713	chr4:105710713:A:G	rs11727735	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	105754788	105754789	chr4:105754789:A:T	rs11731714	A	T	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	106132240	106132241	chr4:106132241:A:C	chr4:106132241:A:C	A	C	A	Sox1_MA0870.1	13	1	-	4.129087808037361	0.48654008140028837	CACAAAACCATTTTT
chr4	106565903	106565904	chr4:106565904:T:C	rs17358000	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr4	106734096	106734097	chr4:106734097:A:G	rs58348249	A	G	A	Sox1_MA0870.1	5	1	-	5.577801116159356	-1.3253636424884048	TACAATTCCATAGTA
chr4	107319219	107319220	chr4:107319220:A:G	rs17037600	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr4	107319267	107319268	chr4:107319268:G:A	rs76141033	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr4	107470226	107470227	chr4:107470227:A:G	rs1548487	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	107483774	107483775	chr4:107483775:T:C	chr4:107483775:T:C	T	C	t	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	107644452	107644453	chr4:107644453:G:A	rs11934943	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr4	107684152	107684153	chr4:107684153:A:T	rs17037986	A	T	A	Sox1_MA0870.1	26	0	+	0	0	.
chr4	107711931	107711932	chr4:107711932:T:C	rs150711664	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr4	107760934	107760935	chr4:107760935:C:T	rs4956136	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr4	108043538	108043539	chr4:108043539:C:T	rs143052526	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr4	108070993	108070994	chr4:108070994:G:A	rs79192813	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr4	108426543	108426544	chr4:108426544:T:G	rs219491	T	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	108466141	108466142	chr4:108466142:A:G	rs72889372	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	108821718	108821719	chr4:108821719:G:A	rs11722154	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr4	108878936	108878937	chr4:108878937:G:A	rs1114764	G	A	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	108907122	108907123	chr4:108907123:T:G	rs11731391	T	G	T	Sox1_MA0870.1	1	1	+	4.975926247681777	4.154919839449776	ATCACTAGGATTGAT
chr4	108951027	108951028	chr4:108951028:T:C	rs7654973	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	109043364	109043365	chr4:109043365:T:C	rs3096470	T	C	T	Sox1_MA0870.1	13	1	+	4.417993689464121	2.240338392013127	AGAAATAGCATTGTA
chr4	109233881	109233882	chr4:109233882:A:G	rs17304953	A	G	A	Sox1_MA0870.1	9	1	+	7.894650089617187	0.9858953103019645	AACAATTTCATGGTC
chr4	109641086	109641087	chr4:109641087:A:G	rs2346835	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	110222892	110222893	chr4:110222893:A:G	rs4698816	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	110306436	110306437	chr4:110306437:G:C	rs10010721	G	C	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	110414565	110414566	chr4:110414566:C:T	rs1879057	C	T	c	Sox1_MA0870.1	34	0	-	0	0	.
chr4	111132826	111132827	chr4:111132827:C:T	rs6828479	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr4	111178204	111178205	chr4:111178205:C:G	rs78868402	C	G	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	111294499	111294500	chr4:111294500:C:T	rs13125281	C	T	A	Sox1_MA0870.1	16	0	-	0	0	.
chr4	111562740	111562741	chr4:111562741:T:G	rs11722462	T	G	G	Sox1_MA0870.1	27	0	+	0	0	.
chr4	111604612	111604613	chr4:111604613:G:T	rs2717200	G	T	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr4	111850061	111850062	chr4:111850062:A:G	rs2174537	A	G	A	Sox1_MA0870.1	10	1	-	3.9844356572647683	-2.824261426871565	GACAACTTCATTGCA
chr4	111986868	111986869	chr4:111986869:G:T	rs12644757	G	T	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr4	112433764	112433765	chr4:112433765:T:C	rs11930555	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	112512887	112512888	chr4:112512888:C:T	rs62314757	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	112518133	112518134	chr4:112518134:A:G	rs1948083	A	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr4	112818662	112818663	chr4:112818663:G:C	rs28527179	G	C	G	Sox1_MA0870.1	7	1	-	3.6844628322899093	3.7172453320294436	GACACAGCCAGTGTC
chr4	112861769	112861770	chr4:112861770:T:C	rs895763	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr4	113146241	113146242	chr4:113146242:A:T	rs2171058	A	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr4	113146252	113146253	chr4:113146253:A:G	rs2171057	A	G	G	Sox1_MA0870.1	5	1	-	5.44547750910107	-1.4576872495466877	GACAGTGTCATTGCT
chr4	113172996	113172997	chr4:113172997:A:C	rs6813737	A	C	g	Sox1_MA0870.1	19	0	+	0	0	.
chr4	113446156	113446157	chr4:113446157:C:T	rs78104782	C	T	C	Sox1_MA0870.1	0	1	-	10.484378209250835	11.826501352057587	GTCAATATCATTGCT
chr4	113946530	113946531	chr4:113946531:G:A	rs28700902	G	A	-	Sox1_MA0870.1	25	0	-	0	0	.
chr4	114208658	114208659	chr4:114208659:T:C	rs1603617	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	114271236	114271237	chr4:114271237:A:G	rs139348676	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr4	114305095	114305096	chr4:114305096:T:G	rs28502715	T	G	T	Sox1_MA0870.1	16	0	-	0	0	.
chr4	114559654	114559655	chr4:114559655:C:T	rs112922949	C	T	C	Sox1_MA0870.1	13	1	+	8.042187345796902	10.219842643247897	AACAAATACATTGCC
chr4	114949874	114949875	chr4:114949875:C:T	rs998359	C	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	115167889	115167890	chr4:115167890:T:C	rs9994109	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr4	115844549	115844550	chr4:115844550:T:C	rs1835502	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr4	116544143	116544144	chr4:116544144:A:T	rs17504567	A	T	T	Sox1_MA0870.1	0	1	+	3.7416988855474944	1.8030247798450332	ACCACTGGCAGTGCA
chr4	116553219	116553220	chr4:116553220:C:T	rs78527300	C	T	-	Sox1_MA0870.1	31	0	-	0	0	.
chr4	116810093	116810094	chr4:116810094:G:A	rs10049964	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	116810115	116810116	chr4:116810116:C:T	rs2221208	C	T	C	Sox1_MA0870.1	14	1	+	6.434333604274704	7.945343008756108	ATCCATTTCATTGTC
chr4	116874786	116874787	chr4:116874787:G:A	rs72675454	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	117400078	117400079	chr4:117400079:T:C	rs17866921	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr4	117604611	117604612	chr4:117604612:C:G	rs17867515	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	117665099	117665100	chr4:117665100:A:G	rs11098400	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	118173309	118173310	chr4:118173310:C:T	rs11947071	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr4	118284513	118284514	chr4:118284514:T:A	rs79122966	T	A	T	Sox1_MA0870.1	5	1	+	4.847161368938159	-0.17196864437237602	CACACTTACAATGTA
chr4	118586330	118586331	chr4:118586331:G:A	rs111747134	G	A	.	Sox1_MA0870.1	20	0	-	0	0	.
chr4	118842361	118842362	chr4:118842362:G:A	rs59075024	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr4	118941310	118941311	chr4:118941311:C:T	rs56722335	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr4	118974253	118974254	chr4:118974254:G:A	rs36116256	G	A	G	Sox1_MA0870.1	7	1	-	4.47903404791875	4.467204995370377	TACAATACCTGTGTG
chr4	119100725	119100726	chr4:119100726:G:A	rs10023200	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr4	119317918	119317919	chr4:119317919:A:G	rs10213267	A	G	a	Sox1_MA0870.1	22	0	+	0	0	.
chr4	119657384	119657385	chr4:119657385:A:G	rs7664440	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr4	119726675	119726676	chr4:119726676:T:C	rs11098535	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	120401967	120401968	chr4:120401968:A:G	rs1448065	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr4	120481188	120481189	chr4:120481189:G:T	rs72672558	G	T	G	Sox1_MA0870.1	22	0	+	0	0	.
chr4	120693854	120693855	chr4:120693855:C:T	rs17345577	C	T	C	Sox1_MA0870.1	2	1	+	8.098376081622373	1.1896213023071516	CACTATTACATTGTA
chr4	120820100	120820101	chr4:120820101:A:G	rs343187	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr4	121157827	121157828	chr4:121157828:C:A	rs17051300	C	A	C	Sox1_MA0870.1	27	0	+	0	0	.
chr4	121177795	121177796	chr4:121177796:C:T	rs1470821	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr4	121178379	121178380	chr4:121178380:C:T	rs1877167	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr4	121178399	121178400	chr4:121178400:T:G	rs9307490	T	G	G	Sox1_MA0870.1	4	1	-	8.042131543844633	6.085318609219417	TGCAATTCCAGTGTT
chr4	121198186	121198187	chr4:121198187:G:A	rs114945578	G	A	G	Sox1_MA0870.1	13	1	-	6.656424126762791	8.834079424213785	AAAAATGTCATTGCT
chr4	121340440	121340441	chr4:121340441:A:T	rs12651331	A	T	A	Sox1_MA0870.1	21	0	+	0	0	.
chr4	121398347	121398348	chr4:121398348:T:C	rs13126125	T	C	T	Sox1_MA0870.1	14	1	-	8.313567927195681	8.488899164262726	AACACTTGTATTGTA
chr4	121819833	121819834	chr4:121819834:G:A	rs3217767	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr4	121950476	121950477	chr4:121950477:A:G	rs970349	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr4	122285396	122285397	chr4:122285397:G:A	rs193294687	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	122664206	122664207	chr4:122664207:G:A	rs6811007	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr4	122874287	122874288	chr4:122874288:C:T	rs10035081	C	T	C	Sox1_MA0870.1	2	1	+	5.9325934147847486	-0.9761613645304708	TCCAATAATATTGTA
chr4	123103450	123103451	chr4:123103451:T:C	rs412493	T	C	T	Sox1_MA0870.1	5	1	+	5.555569503226131	-1.3475952554216284	CACAATACTAGTGCA
chr4	123304487	123304488	chr4:123304488:G:T	rs142420242	G	T	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	123362965	123362966	chr4:123362966:C:G	rs7667357	C	G	G	Sox1_MA0870.1	12	1	-	4.400813483524722	-2.507941295790498	GGGAATTACATTGTT
chr4	123617344	123617345	chr4:123617345:T:C	rs7661054	T	C	t	Sox1_MA0870.1	29	0	+	0	0	.
chr4	123706873	123706874	chr4:123706874:G:A	rs13117812	G	A	A	Sox1_MA0870.1	12	1	+	6.652330648603817	-0.25642413071140435	CAAAATTTCATTGTC
chr4	123980590	123980591	chr4:123980591:T:G	rs55922840	T	G	T	Sox1_MA0870.1	10	1	+	7.283108998400707	5.041984069837149	GACAAAAACATTGCA
chr4	123986416	123986417	chr4:123986417:T:A	rs188440818	T	A	T	Sox1_MA0870.1	2	1	-	5.795145984128384	5.795145984128384	AAAAAAAACATTGTT
chr4	124030348	124030349	chr4:124030349:T:C	rs2049030	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	124318759	124318760	chr4:124318760:A:G	rs2085478	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr4	124322631	124322632	chr4:124322632:G:A	rs78323649	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	124374276	124374277	chr4:124374277:C:T	rs4833978	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	124854874	124854875	chr4:124854875:C:G	rs11944773	C	G	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	124867475	124867476	chr4:124867476:C:G	rs4834007	C	G	C	Sox1_MA0870.1	33	0	-	0	0	.
chr4	125345221	125345222	chr4:125345222:C:G	rs75346256	C	G	C	Sox1_MA0870.1	30	0	-	0	0	.
chr4	125481418	125481419	chr4:125481419:C:T	rs10026056	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr4	125486249	125486250	chr4:125486250:C:G	rs10009314	C	G	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	125515235	125515236	chr4:125515236:T:A	rs75383253	T	A	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr4	125520479	125520480	chr4:125520480:A:G	rs1506351	A	G	A	Sox1_MA0870.1	11	1	-	5.635976300764527	0.6805813149541936	AACCATTTCAGTGAT
chr4	125818319	125818320	chr4:125818320:C:T	rs28738820	C	T	C	Sox1_MA0870.1	8	1	+	7.700306020904619	3.5186964742673377	AACTATACCATTGCA
chr4	125831317	125831318	chr4:125831318:G:A	rs12506087	G	A	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	125991543	125991544	chr4:125991544:C:T	rs1567005	C	T	T	Sox1_MA0870.1	31	0	+	0	0	.
chr4	126128015	126128016	chr4:126128016:C:T	rs4834090	C	T	C	Sox1_MA0870.1	12	1	-	7.584743785861834	0.6759890065466129	AACCCTTGCATTGTG
chr4	126350550	126350551	chr4:126350551:T:C	rs10002555	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	126633633	126633634	chr4:126633634:T:A	rs313102	T	A	T	Sox1_MA0870.1	11	1	+	5.242817374932318	-1.6599153119245142	AACAATAAGAATGTA
chr4	126702904	126702905	chr4:126702905:C:T	rs62324175	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	126755476	126755477	chr4:126755477:A:G	rs2202278	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr4	126904182	126904183	chr4:126904183:C:T	rs11731081	C	T	c	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	126951587	126951588	chr4:126951588:C:T	rs78687859	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr4	127036381	127036382	chr4:127036382:C:T	rs11098909	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr4	127450677	127450678	chr4:127450678:T:C	rs4461539	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr4	127605366	127605367	chr4:127605367:C:A	rs60404814	C	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	127699044	127699045	chr4:127699045:A:G	rs143868086	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	127783726	127783727	chr4:127783727:A:G	rs72616949	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr4	127857249	127857250	chr4:127857250:T:C	rs143991735	T	C	T	Sox1_MA0870.1	10	1	+	6.670556900441758	-0.1381401836945758	CCCAATGCCATTGCA
chr4	128309410	128309411	chr4:128309411:C:T	rs117257723	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr4	128323839	128323840	chr4:128323840:C:T	chr4:128323840:C:T	C	T	C	Sox1_MA0870.1	2	1	+	4.373194534422662	-2.5355602448925594	TACAATACCATGGCA
chr4	128323854	128323855	chr4:128323855:G:A	rs760541246	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr4	128386561	128386562	chr4:128386562:A:G	rs7654743	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr4	128456935	128456936	chr4:128456936:C:T	rs2133464	C	T	T	Sox1_MA0870.1	10	1	-	9.826969751896403	5.259397596323632	TACAATGACAGTGCT
chr4	128537310	128537311	chr4:128537311:A:G	rs36029254	A	G	A	Sox1_MA0870.1	1	1	+	4.568822409855989	0.470531754462848	CACACTCCCAGTGTA
chr4	128590291	128590292	chr4:128590292:A:G	rs1732091	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr4	128590294	128590295	chr4:128590295:C:G	rs1695416	C	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr4	128609932	128609933	chr4:128609933:T:A	rs1216415	T	A	t	Sox1_MA0870.1	-20	0	+	0	0	.
chr4	128860075	128860076	chr4:128860076:A:G	rs73850017	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr4	129336708	129336709	chr4:129336709:A:T	rs6534726	A	T	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr4	129498839	129498840	chr4:129498840:A:C	rs599733	A	C	A	Sox1_MA0870.1	31	0	-	0	0	.
chr4	129893155	129893156	chr4:129893156:A:G	rs72615876	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr4	130073773	130073774	chr4:130073774:A:G	rs2391581	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	130154706	130154707	chr4:130154707:G:A	rs67052396	G	A	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr4	130704282	130704283	chr4:130704283:G:T	rs62317283	G	T	G	Sox1_MA0870.1	12	1	+	4.960383174506582	-1.948371604808639	GACCATATAATTGTT
chr4	130704300	130704301	chr4:130704301:G:A	rs10020498	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr4	130747907	130747908	chr4:130747908:G:C	rs17492514	G	C	-	Sox1_MA0870.1	-11	0	-	0	0	.
chr4	131092087	131092088	chr4:131092088:C:T	rs1552944	C	T	C	Sox1_MA0870.1	8	1	+	6.722292931784983	2.5406833851477004	GACATTTGCATTGTC
chr4	131548172	131548173	chr4:131548173:C:T	rs138718820	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	132180482	132180483	chr4:132180483:T:C	rs77882680	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	132214771	132214772	chr4:132214772:T:C	rs348070	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr4	132238860	132238861	chr4:132238861:C:T	rs62317704	C	T	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	132238883	132238884	chr4:132238884:G:A	rs60224107	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr4	132446499	132446500	chr4:132446500:G:A	rs1827133	G	A	g	Sox1_MA0870.1	23	0	-	0	0	.
chr4	132618535	132618536	chr4:132618536:C:G	rs13135040	C	G	C	Sox1_MA0870.1	20	0	+	0	0	.
chr4	132642645	132642646	chr4:132642646:C:T	rs1025588	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr4	132865768	132865769	chr4:132865769:A:G	rs6817623	A	G	A	Sox1_MA0870.1	13	1	-	6.616338134250141	4.4386828367991455	AAGACTAACAGTGTT
chr4	133555922	133555923	chr4:133555923:C:T	rs142453940	C	T	c	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	133659311	133659312	chr4:133659312:A:G	rs2724287	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr4	134127339	134127340	chr4:134127340:T:A	rs1580698	T	A	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	134491122	134491123	chr4:134491123:A:G	rs992164	A	G	G	Sox1_MA0870.1	7	1	+	5.080035162240015	4.683056834443508	CCCACTGACAGTGTA
chr4	134843097	134843098	chr4:134843098:C:G	rs138775643	C	G	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	134931522	134931523	chr4:134931523:G:A	rs7656273	G	A	G	Sox1_MA0870.1	10	1	+	5.33408053076262	0.7665083751898473	CACACAGGCAGTGTT
chr4	134935497	134935498	chr4:134935498:C:G	rs4863923	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	135013663	135013664	chr4:135013664:A:T	rs10021166	A	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	135044992	135044993	chr4:135044993:A:G	rs4530692	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr4	135045007	135045008	chr4:135045008:G:A	rs4645267	G	A	G	Sox1_MA0870.1	2	1	-	5.66716244265684	-1.2415923366583819	ATCTATGACATTGTG
chr4	136805910	136805911	chr4:136805911:A:T	rs1460144	A	T	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	136819316	136819317	chr4:136819317:G:C	rs898429	G	C	G	Sox1_MA0870.1	30	0	+	0	0	.
chr4	137308253	137308254	chr4:137308254:T:C	rs17049511	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr4	137390340	137390341	chr4:137390341:A:C	rs756816120	A	C	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	137390340	137390341	chr4:137390341:A:T	chr4:137390341:A:T	A	T	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr4	137456085	137456086	chr4:137456086:A:G	rs7659135	A	G	C	Sox1_MA0870.1	34	0	-	0	0	.
chr4	137610066	137610067	chr4:137610067:G:A	rs4863760	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	137632139	137632140	chr4:137632140:C:T	rs116704054	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr4	137999246	137999247	chr4:137999247:A:G	rs77775464	A	G	A	Sox1_MA0870.1	13	1	-	8.102125811121356	5.924470513670362	GACAATTGCCTTGTT
chr4	138182955	138182956	chr4:138182956:T:C	rs115001718	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	138182956	138182957	chr4:138182957:G:C	rs544450234	G	C	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	138222364	138222365	chr4:138222365:A:C	chr4:138222365:A:C	A	C	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr4	138252653	138252654	chr4:138252654:T:C	rs11731740	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	138335012	138335013	chr4:138335013:T:C	rs113064243	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr4	138405864	138405865	chr4:138405865:G:A	rs4863797	G	A	G	Sox1_MA0870.1	0	1	+	4.251051139148126	5.593174281954878	GACACTGACCTTGTG
chr4	138482743	138482744	chr4:138482744:A:G	rs11729957	A	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	138488669	138488670	chr4:138488670:C:T	rs74618087	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr4	138592910	138592911	chr4:138592911:G:A	rs62324077	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	138592944	138592945	chr4:138592945:A:C	rs4863565	A	C	A	Sox1_MA0870.1	24	0	+	0	0	.
chr4	138719238	138719239	chr4:138719239:G:A	rs62324140	G	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr4	139025493	139025494	chr4:139025494:A:G	rs17050680	A	G	A	Sox1_MA0870.1	10	1	-	8.902185478170779	2.0934883940344444	ATCAATAACATTGGA
chr4	139145127	139145128	chr4:139145128:G:A	rs2101425	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr4	139145129	139145130	chr4:139145130:G:A	rs2101424	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr4	139461201	139461202	chr4:139461202:G:A	rs35097785	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	139557706	139557707	chr4:139557707:T:G	rs111580374	T	G	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	139761385	139761386	chr4:139761386:G:C	rs6536444	G	C	-	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	139761386	139761387	chr4:139761387:A:G	rs1543067	A	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	139860763	139860764	chr4:139860764:T:C	rs2667365	T	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr4	139922702	139922703	chr4:139922703:A:G	rs112571460	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr4	139958954	139958955	chr4:139958955:T:C	rs769675	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	139987402	139987403	chr4:139987403:T:G	rs774684783	T	G	T	Sox1_MA0870.1	26	0	+	0	0	.
chr4	140251258	140251259	chr4:140251259:C:T	rs7659292	C	T	T	Sox1_MA0870.1	2	1	-	4.072564939461554	4.072564939461554	CAGAATGACAGTGTG
chr4	140277446	140277447	chr4:140277447:G:A	rs34070717	G	A	G	Sox1_MA0870.1	12	1	+	4.768961166330858	-2.1397936129843615	TGCTATTCCATTGTT
chr4	140317056	140317057	chr4:140317057:A:G	rs190643841	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr4	140333213	140333214	chr4:140333214:C:T	rs1912963	C	T	T	Sox1_MA0870.1	20	0	+	0	0	.
chr4	140602852	140602853	chr4:140602853:A:G	rs56277332	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	141154383	141154384	chr4:141154384:C:T	rs354934	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr4	141154399	141154400	chr4:141154400:G:A	rs4956350	G	A	A	Sox1_MA0870.1	16	0	-	0	0	.
chr4	141342498	141342499	chr4:141342499:A:G	rs55762117	A	G	A	Sox1_MA0870.1	7	1	+	4.926030386868662	4.5290520590721535	CTCAAAGACATTGTG
chr4	141581778	141581779	chr4:141581779:T:C	rs1961720	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	141609455	141609456	chr4:141609456:C:T	rs1519548	C	T	C	Sox1_MA0870.1	8	1	+	9.678036344062823	5.496426797425541	CACAATAACACTGTT
chr4	141654414	141654415	chr4:141654415:A:C	rs115468796	A	C	A	Sox1_MA0870.1	34	0	+	0	0	.
chr4	141915000	141915001	chr4:141915001:G:C	rs1909867	G	C	G	Sox1_MA0870.1	2	1	-	6.840765486603138	-0.06798929271208376	TACCCTAACATTGTA
chr4	141915007	141915008	chr4:141915008:A:G	rs2133926	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	142042214	142042215	chr4:142042215:A:T	rs4260616	A	T	A	Sox1_MA0870.1	30	0	-	0	0	.
chr4	142044660	142044661	chr4:142044661:C:T	rs2645813	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr4	142265337	142265338	chr4:142265338:G:A	rs2627828	G	A	A	Sox1_MA0870.1	19	0	-	0	0	.
chr4	142308480	142308481	chr4:142308481:A:G	rs1907107	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr4	142308489	142308490	chr4:142308490:C:T	rs1907106	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr4	142335962	142335963	chr4:142335963:C:T	rs6827918	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr4	142378046	142378047	chr4:142378047:T:A	rs78661502	T	A	T	Sox1_MA0870.1	18	0	-	0	0	.
chr4	142378849	142378850	chr4:142378850:T:G	rs6828156	T	G	T	Sox1_MA0870.1	5	1	+	3.42226450187818	-3.480900256769578	CCCACTACCCTTGTT
chr4	142379257	142379258	chr4:142379258:G:A	rs903305143	G	A	G	Sox1_MA0870.1	14	1	+	4.8778636447918995	4.702532407724855	ACCAATATCCTTGTG
chr4	142563729	142563730	chr4:142563730:G:A	rs111705685	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	142971098	142971099	chr4:142971099:A:C	rs7692881	A	C	C	Sox1_MA0870.1	9	1	+	9.714586596385526	2.8058318170703065	AACAATCTCATTGCT
chr4	143360851	143360852	chr4:143360852:A:G	rs17738628	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr4	143487918	143487919	chr4:143487919:G:A	rs1112861	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	143487919	143487920	chr4:143487920:C:A	rs952304	C	A	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	143707282	143707283	chr4:143707283:C:T	rs11723113	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr4	143728173	143728174	chr4:143728174:C:T	rs1813908	C	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	144304845	144304846	chr4:144304846:G:A	rs6821055	G	A	A	Sox1_MA0870.1	2	1	-	6.0893127654277714	-0.8194420138874505	GACACATTCATTGTA
chr4	144354146	144354147	chr4:144354147:T:A	rs115966499	T	A	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr4	144584485	144584486	chr4:144584486:C:T	rs10013495	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	145414818	145414819	chr4:145414819:G:C	rs116226418	G	C	G	Sox1_MA0870.1	19	0	-	0	0	.
chr4	145566624	145566625	chr4:145566625:G:C	rs6818989	G	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	145566717	145566718	chr4:145566718:A:G	rs113904822	A	G	A	Sox1_MA0870.1	11	1	-	4.424216734613823	-0.5311782511965119	GGCAATGACAGTGCA
chr4	145847921	145847922	chr4:145847922:G:A	rs1027841	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr4	146049533	146049534	chr4:146049534:G:A	rs9997873	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr4	146154107	146154108	chr4:146154108:C:T	rs147165661	C	T	C	Sox1_MA0870.1	2	1	+	3.6848152404689873	-3.2239395388462326	CACAATAGGCTTGTG
chr4	146381384	146381385	chr4:146381385:A:G	rs75369178	A	G	A	Sox1_MA0870.1	9	1	+	4.624583728416727	-2.284171050898494	TACTCTAACATTGCC
chr4	146960354	146960355	chr4:146960355:T:C	rs76854641	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr4	147050920	147050921	chr4:147050921:C:T	rs10446782	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	147054802	147054803	chr4:147054803:T:C	rs144733637	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr4	147158612	147158613	chr4:147158613:C:T	rs72735726	C	T	C	Sox1_MA0870.1	7	1	-	5.263740538523933	5.66071886632044	AACAATAGCATTAGC
chr4	147547344	147547345	chr4:147547345:C:T	rs79407802	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr4	147731242	147731243	chr4:147731243:A:C	rs72951430	A	C	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	147943356	147943357	chr4:147943357:T:C	rs6815620	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr4	147994592	147994593	chr4:147994593:A:G	rs17024245	A	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr4	148044111	148044112	chr4:148044112:T:G	rs146427370	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	148088823	148088824	chr4:148088824:C:A	rs6535578	C	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	148131698	148131699	chr4:148131699:T:A	rs11099678	T	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	148573361	148573362	chr4:148573362:G:A	rs977064	G	A	A	Sox1_MA0870.1	2	1	-	7.718566866210004	0.8098120868947841	AACAATTGCATTCTG
chr4	148828479	148828480	chr4:148828480:T:A	rs1983422	T	A	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	148828493	148828494	chr4:148828494:G:A	rs4240350	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr4	149136821	149136822	chr4:149136822:C:T	rs34222745	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	149136826	149136827	chr4:149136827:T:C	rs1438766	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	149303685	149303686	chr4:149303686:A:C	rs17624402	A	C	A	Sox1_MA0870.1	27	0	+	0	0	.
chr4	149311437	149311438	chr4:149311438:T:C	rs10019955	T	C	T	Sox1_MA0870.1	10	1	+	9.6577508242189	2.8490537400825655	TACAATTACATTGGC
chr4	149466348	149466349	chr4:149466349:T:C	rs7675037	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr4	149785959	149785960	chr4:149785960:C:T	rs116365658	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr4	149997938	149997939	chr4:149997939:T:A	rs60173171	T	A	T	Sox1_MA0870.1	13	1	+	4.0214358200467775	0.6759097934576186	CACAGTGGCAGTGTC
chr4	150259723	150259724	chr4:150259724:C:A	rs898333	C	A	A	Sox1_MA0870.1	8	1	+	6.065220702215067	0.17205104789685277	CACATTTCCAGTGTT
chr4	150283699	150283700	chr4:150283700:C:T	rs114767081	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	150911459	150911460	chr4:150911460:T:C	rs77013479	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr4	150934174	150934175	chr4:150934175:G:A	rs76087649	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	151355590	151355591	chr4:151355591:A:C	rs4696081	A	C	A	Sox1_MA0870.1	31	0	+	0	0	.
chr4	151356745	151356746	chr4:151356746:G:A	rs10001678	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr4	151356746	151356747	chr4:151356747:C:A	rs10001535	C	A	C	Sox1_MA0870.1	23	0	+	0	0	.
chr4	151358492	151358493	chr4:151358493:C:T	rs1010242023	C	T	C	Sox1_MA0870.1	8	1	+	7.224187386462212	3.0425778398249297	CACACTAGCATTCTT
chr4	151692389	151692390	chr4:151692390:A:G	rs6822737	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	151745615	151745616	chr4:151745616:A:C	rs10023298	A	C	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	152243946	152243947	chr4:152243947:A:G	rs115173434	A	G	A	Sox1_MA0870.1	1	1	+	4.877236663646879	0.7789460082537377	GACACTAGCCGTGTT
chr4	152462044	152462045	chr4:152462045:A:G	rs78989168	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr4	152574362	152574363	chr4:152574363:G:A	rs10011174	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr4	152805429	152805430	chr4:152805430:T:C	rs62319865	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr4	152901422	152901423	chr4:152901423:T:C	rs78265029	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr4	153089228	153089229	chr4:153089229:G:A	rs6818558	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr4	153464441	153464442	chr4:153464442:A:G	rs12644734	A	G	A	Sox1_MA0870.1	14	1	-	4.741133659660245	3.2301242551788407	TAGACTAACATTGCT
chr4	153610884	153610885	chr4:153610885:T:C	rs116245743	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr4	153610894	153610895	chr4:153610895:G:T	rs13135353	G	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr4	153851507	153851508	chr4:153851508:T:A	rs4696510	T	A	T	Sox1_MA0870.1	31	0	-	0	0	.
chr4	153851793	153851794	chr4:153851794:C:T	rs4696511	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr4	153905108	153905109	chr4:153905109:G:T	rs11942666	G	T	G	Sox1_MA0870.1	28	0	+	0	0	.
chr4	154029047	154029048	chr4:154029048:C:T	rs58229057	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr4	154029057	154029058	chr4:154029058:A:G	rs59388795	A	G	G	Sox1_MA0870.1	11	1	-	3.8303568980714497	-1.1250380877388846	CTCACTGACAGTGGT
chr4	154128331	154128332	chr4:154128332:C:T	rs938716	C	T	C	Sox1_MA0870.1	7	1	-	3.5079253958704997	3.9049037236670077	CAAACTGGCATTGCT
chr4	154329507	154329508	chr4:154329508:G:A	rs75602216	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr4	154500557	154500558	chr4:154500558:A:G	rs4345160	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr4	154657797	154657798	chr4:154657798:G:T	rs62324911	G	T	G	Sox1_MA0870.1	29	0	+	0	0	.
chr4	154959049	154959050	chr4:154959050:C:A	rs370641117	C	A	C	Sox1_MA0870.1	12	1	-	6.7010356790506975	-0.20771910026452345	AAAAATGGCATTGCT
chr4	155742444	155742445	chr4:155742445:G:A	rs7684247	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr4	155911994	155911995	chr4:155911995:A:G	rs7674417	A	G	A	Sox1_MA0870.1	13	1	-	5.807846965191578	3.630191667740584	AAAACTGACATTGTC
chr4	155922392	155922393	chr4:155922393:A:G	rs72681584	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr4	155960454	155960455	chr4:155960455:A:G	rs34549551	A	G	G	Sox1_MA0870.1	9	1	+	5.728971431845254	-1.1797833474699662	AAAACTTCCATTGTG
chr4	156016057	156016058	chr4:156016058:C:T	rs11100027	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr4	156187137	156187138	chr4:156187138:A:G	rs13115068	A	G	G	Sox1_MA0870.1	0	1	+	10.478939513311333	9.13681637050458	ATCAATAACAGTGTG
chr4	156195035	156195036	chr4:156195036:T:C	rs62327790	T	C	C	Sox1_MA0870.1	13	1	+	8.578741089542818	6.401085792091824	AACAAGAACAGTGTT
chr4	156231294	156231295	chr4:156231295:C:T	rs2879725	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr4	156247755	156247756	chr4:156247756:G:A	rs12502662	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr4	156539796	156539797	chr4:156539797:C:T	rs77760010	C	T	C	Sox1_MA0870.1	2	1	+	4.325671198436745	-2.583083580878477	GACAATAACACTGAA
chr4	156619565	156619566	chr4:156619566:C:T	rs6832283	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr4	156976401	156976402	chr4:156976402:A:G	rs1443237	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr4	157474175	157474176	chr4:157474176:T:C	rs72966605	T	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	157509482	157509483	chr4:157509483:A:G	rs59357327	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	157509490	157509491	chr4:157509491:C:T	rs17247935	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr4	157688327	157688328	chr4:157688328:T:C	rs1490531	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr4	157701466	157701467	chr4:157701467:G:T	rs920225540	G	T	g	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	157738142	157738143	chr4:157738143:A:G	rs74704382	A	G	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr4	157979296	157979297	chr4:157979297:A:T	rs4615226	A	T	A	Sox1_MA0870.1	28	0	+	0	0	.
chr4	158111428	158111429	chr4:158111429:C:T	rs1038433780	C	T	C	Sox1_MA0870.1	8	1	+	4.623520762770866	0.44191121613358353	GACAAATGCATTGGG
chr4	158633311	158633312	chr4:158633312:T:C	rs144210289	T	C	T	Sox1_MA0870.1	1	1	-	12.112115529440306	8.013824874047165	AACAATGCCATTGGT
chr4	159006966	159006967	chr4:159006967:T:C	rs999410	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr4	159060487	159060488	chr4:159060488:T:C	rs581849	T	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr4	159096757	159096758	chr4:159096758:T:G	rs579121	T	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr4	159228339	159228340	chr4:159228340:A:T	rs150533846	A	T	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	159434593	159434594	chr4:159434594:G:A	rs4690942	G	A	.	Sox1_MA0870.1	-20	0	-	0	0	.
chr4	159794672	159794673	chr4:159794673:A:G	rs6831972	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	159891413	159891414	chr4:159891414:A:G	rs62333046	A	G	A	Sox1_MA0870.1	5	1	-	5.197000682062058	-1.706164076585702	AACAATGACATTCCA
chr4	159925985	159925986	chr4:159925986:A:T	rs28556745	A	T	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	160056307	160056308	chr4:160056308:G:A	rs35164655	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr4	160485516	160485517	chr4:160485517:A:G	rs6839540	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	160498429	160498430	chr4:160498430:T:G	rs7664261	T	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	162134778	162134779	chr4:162134779:T:C	rs902852	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr4	162134784	162134785	chr4:162134785:A:G	rs875999	A	G	A	Sox1_MA0870.1	10	1	-	4.700051685905486	-2.1086453982308475	AACACAGCCATTGCA
chr4	162457624	162457625	chr4:162457625:T:C	rs11100445	T	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr4	162563691	162563692	chr4:162563692:G:A	rs7698288	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr4	162563715	162563716	chr4:162563716:A:G	rs6856230	A	G	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	162659293	162659294	chr4:162659294:C:T	chr4:162659294:C:T	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	163164618	163164619	chr4:163164619:A:C	rs6536705	A	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	163269672	163269673	chr4:163269673:G:A	rs74495978	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr4	163587879	163587880	chr4:163587880:T:C	rs7695517	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr4	163607299	163607300	chr4:163607300:A:G	rs1511779	A	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr4	163753878	163753879	chr4:163753879:C:T	rs2131861	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	163969917	163969918	chr4:163969918:G:A	rs4056332	G	A	A	Sox1_MA0870.1	12	1	+	5.353556104043969	-1.5551986752712512	AAGAAAATCATTGTT
chr4	164440403	164440404	chr4:164440404:C:A	rs11931372	C	A	A	Sox1_MA0870.1	12	1	-	7.410706681081418	0.5019519017661972	CACAATATCTTTGTG
chr4	164508953	164508954	chr4:164508954:G:A	rs145773605	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr4	164725298	164725299	chr4:164725299:G:A	rs72687891	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	164770275	164770276	chr4:164770276:C:A	rs62352459	C	A	C	Sox1_MA0870.1	1	1	+	6.61958852007805	10.38872890492255	GCCAAATACATTGTT
chr4	165487629	165487630	chr4:165487630:T:G	rs3822062	T	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr4	166091421	166091422	chr4:166091422:T:C	rs17505943	T	C	T	Sox1_MA0870.1	10	1	+	4.745781351956924	-2.0629157321794094	AATAATAGGATTGTA
chr4	166386695	166386696	chr4:166386696:C:T	rs2611701	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	167023024	167023025	chr4:167023025:T:C	rs35280774	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr4	167218228	167218229	chr4:167218229:A:G	rs9312517	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr4	167218263	167218264	chr4:167218264:C:A	rs371289259	C	A	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	167455540	167455541	chr4:167455541:A:G	rs2252437	A	G	g	Sox1_MA0870.1	6	1	+	5.859104521638383	4.320497828497665	CTTAATATCATTGTT
chr4	167763337	167763338	chr4:167763338:C:G	rs7670147	C	G	C	Sox1_MA0870.1	21	0	-	0	0	.
chr4	167887549	167887550	chr4:167887550:G:C	rs113568422	G	C	G	Sox1_MA0870.1	33	0	-	0	0	.
chr4	168097738	168097739	chr4:168097739:C:T	rs150828827	C	T	C	Sox1_MA0870.1	8	1	+	5.584392465711959	1.4027829190746748	ATAAATATCATTGTC
chr4	168208038	168208039	chr4:168208039:G:C	rs28403031	G	C	G	Sox1_MA0870.1	12	1	+	5.945740241396939	-0.9630145379182823	TAAACTTACATTGTT
chr4	168409265	168409266	chr4:168409266:G:A	rs72976829	G	A	G	Sox1_MA0870.1	3	1	-	7.697410119719997	7.268879738680836	AACCATTACAGTGTG
chr4	168421773	168421774	chr4:168421774:C:T	rs376164834	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr4	168604747	168604748	chr4:168604748:C:T	rs62335531	C	T	T	Sox1_MA0870.1	10	1	+	5.303418445303972	12.112115529440306	AACAATGCCACTGGT
chr4	168604771	168604772	chr4:168604772:C:T	rs7658992	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	168668062	168668063	chr4:168668063:T:C	rs2723705	T	C	T	Sox1_MA0870.1	10	1	+	14.227611148988203	7.418914064851869	AACACTGACATTGTT
chr4	168708301	168708302	chr4:168708302:A:T	rs12511925	A	T	A	Sox1_MA0870.1	6	1	+	5.611171632602272	4.638122916887971	CACAATAACCGTGTG
chr4	168766783	168766784	chr4:168766784:A:G	rs142449126	A	G	A	Sox1_MA0870.1	0	1	+	5.210998030022761	3.868874887216007	AGCAATAACATGGTC
chr4	169212804	169212805	chr4:169212805:C:T	rs2706751	C	T	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	169212837	169212838	chr4:169212838:C:A	rs141688897	C	A	C	Sox1_MA0870.1	25	0	+	0	0	.
chr4	169360151	169360152	chr4:169360152:T:C	rs116244087	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr4	169363752	169363753	chr4:169363753:G:A	rs72710312	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr4	169407652	169407653	chr4:169407653:A:G	rs10023181	A	G	a	Sox1_MA0870.1	26	0	+	0	0	.
chr4	169870202	169870203	chr4:169870203:A:G	rs28372206	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr4	170027176	170027177	chr4:170027177:C:T	rs67400066	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr4	170066484	170066485	chr4:170066485:A:G	rs1480544	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr4	171236187	171236188	chr4:171236188:G:A	rs10024424	G	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr4	171641883	171641884	chr4:171641884:A:G	rs13151144	A	G	A	Sox1_MA0870.1	6	1	-	4.340258339881313	-0.07589194723758885	AAGAATTCCATTGAG
chr4	172033909	172033910	chr4:172033910:A:T	rs12647912	A	T	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	172401874	172401875	chr4:172401875:G:A	rs335997	G	A	A	Sox1_MA0870.1	12	1	+	9.87441704176981	2.965662262454589	ACCACTAGCATTGTG
chr4	172546935	172546936	chr4:172546936:G:A	rs75664962	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr4	172778713	172778714	chr4:172778714:G:A	rs11132967	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	173001926	173001927	chr4:173001927:T:C	rs141260787	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr4	173153105	173153106	chr4:173153106:G:A	rs6855544	G	A	G	Sox1_MA0870.1	12	1	-	3.639719415472221	3.639719415472221	AACATTAGCATTCTT
chr4	173167713	173167714	chr4:173167714:A:G	rs10011724	A	G	A	Sox1_MA0870.1	11	1	-	4.423050283448366	-0.5323447023619676	TACATTATCAGTGTA
chr4	173466525	173466526	chr4:173466526:G:T	rs142572685	G	T	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	173685658	173685659	chr4:173685659:C:A	rs75002406	C	A	C	Sox1_MA0870.1	24	0	+	0	0	.
chr4	173972510	173972511	chr4:173972511:G:A	rs4075552	G	A	g	Sox1_MA0870.1	8	1	-	4.825022454299091	0.6434129076618095	CACATTGACATTGAT
chr4	174266034	174266035	chr4:174266035:T:A	rs72702241	T	A	T	Sox1_MA0870.1	5	1	+	5.257499148291493	0.2383691349809598	AACAATTTCAGTCTA
chr4	174744217	174744218	chr4:174744218:T:C	rs6823566	T	C	t	Sox1_MA0870.1	-7	0	+	0	0	.
chr4	174744218	174744219	chr4:174744219:G:A	rs76014598	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	175166243	175166244	chr4:175166244:A:T	rs162455	A	T	T	Sox1_MA0870.1	0	1	-	5.295137051035121	7.233811156737581	TACAATTCCATTACT
chr4	175423142	175423143	chr4:175423143:T:C	rs9994051	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr4	175451617	175451618	chr4:175451618:T:C	rs73013865	T	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	175964743	175964744	chr4:175964744:A:G	rs7656002	A	G	G	Sox1_MA0870.1	9	1	+	7.044809746033769	0.1360549667185479	GTCCATTACATTGTT
chr4	176052383	176052384	chr4:176052384:G:A	rs2062389	G	A	A	Sox1_MA0870.1	20	0	+	0	0	.
chr4	176121158	176121159	chr4:176121159:C:T	rs28695418	C	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr4	176238811	176238812	chr4:176238812:C:T	rs76064547	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr4	176575308	176575309	chr4:176575309:A:G	chr4:176575309:A:G	A	G	A	Sox1_MA0870.1	6	1	+	5.728511072400742	4.189904379260024	AACCATAACATTATT
chr4	176575332	176575333	chr4:176575333:G:T	rs10520357	G	T	G	Sox1_MA0870.1	30	0	+	0	0	.
chr4	176837576	176837577	chr4:176837577:G:A	rs6835226	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr4	176928046	176928047	chr4:176928047:C:A	rs7691914	C	A	C	Sox1_MA0870.1	23	0	-	0	0	.
chr4	176928061	176928062	chr4:176928062:A:C	rs2728159	A	C	A	Sox1_MA0870.1	8	1	-	8.231295593990463	8.642402147727408	TACACTTTTATTGTT
chr4	176928086	176928087	chr4:176928087:C:G	rs2724763	C	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr4	176928296	176928297	chr4:176928297:T:C	rs11727688	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr4	176949354	176949355	chr4:176949355:A:G	rs2724754	A	G	A	Sox1_MA0870.1	0	1	+	9.575425479073141	8.233302336266387	AACATTTGCATTGTT
chr4	177077523	177077524	chr4:177077524:T:G	rs1347899	T	G	T	Sox1_MA0870.1	33	0	+	0	0	.
chr4	177189462	177189463	chr4:177189463:C:A	rs12649842	C	A	C	Sox1_MA0870.1	12	1	-	4.061960946630084	-2.8467938326851376	GACAAATGCAGTGCC
chr4	177450705	177450706	chr4:177450706:A:G	rs76718931	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr4	177450733	177450734	chr4:177450734:A:G	rs73867939	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr4	177484782	177484783	chr4:177484783:G:A	rs6820293	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr4	177957969	177957970	chr4:177957970:G:C	rs6826177	G	C	G	Sox1_MA0870.1	33	0	-	0	0	.
chr4	178125485	178125486	chr4:178125486:C:T	rs11131851	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr4	178375493	178375494	chr4:178375494:G:A	chr4:178375494:G:A	G	A	A	Sox1_MA0870.1	19	0	-	0	0	.
chr4	178665377	178665378	chr4:178665378:C:T	rs4862013	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr4	178696931	178696932	chr4:178696932:C:T	rs400763	C	T	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	179399540	179399541	chr4:179399541:C:T	rs12508123	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr4	179628815	179628816	chr4:179628816:C:T	rs76696013	C	T	c	Sox1_MA0870.1	-9	0	+	0	0	.
chr4	180033873	180033874	chr4:180033874:C:G	rs2309127	C	G	T	Sox1_MA0870.1	2	1	+	4.584350864359673	-2.3244039149555458	TACGCTATCATTGTA
chr4	180101096	180101097	chr4:180101097:T:C	rs7664608	T	C	T	Sox1_MA0870.1	5	1	+	6.384979128867389	-0.5181856297803696	GACACTACCAGTGGG
chr4	180790832	180790833	chr4:180790833:A:G	rs139095077	A	G	A	Sox1_MA0870.1	3	1	+	7.442824467014985	0.5422347998177593	AACACTTTCTTTGTT
chr4	181290162	181290163	chr4:181290163:C:T	rs56227104	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr4	181329066	181329067	chr4:181329067:A:G	rs11132050	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr4	181346187	181346188	chr4:181346188:C:A	rs74949885	C	A	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	181379579	181379580	chr4:181379580:A:G	rs2309472	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr4	181538527	181538528	chr4:181538528:G:T	rs7672425	G	T	G	Sox1_MA0870.1	34	0	+	0	0	.
chr4	181570910	181570911	chr4:181570911:G:A	rs116332017	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr4	181598026	181598027	chr4:181598027:G:C	rs62340752	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr4	181598050	181598051	chr4:181598051:G:A	rs12651616	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr4	181793504	181793505	chr4:181793505:C:G	rs6839199	C	G	C	Sox1_MA0870.1	26	0	+	0	0	.
chr4	181996842	181996843	chr4:181996843:G:T	chr4:181996843:G:T	G	T	G	Sox1_MA0870.1	8	1	-	6.985493254604242	1.0923236002860288	CCCACTACCATTGAT
chr4	182538230	182538231	chr4:182538231:T:G	rs4862075	T	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr4	182890892	182890893	chr4:182890893:C:T	rs1130902	C	T	T	Sox1_MA0870.1	17	0	-	0	0	.
chr4	182903447	182903448	chr4:182903448:G:C	rs7688234	G	C	C	Sox1_MA0870.1	2	1	-	5.2371652892419025	-1.6715894900733197	CACACTTACACTGTC
chr4	183101747	183101748	chr4:183101748:A:C	rs34715490	A	C	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr4	183263985	183263986	chr4:183263986:C:G	rs150185381	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr4	183364119	183364120	chr4:183364120:C:T	rs34145465	C	T	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr4	183366190	183366191	chr4:183366191:T:C	rs867658	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr4	183435064	183435065	chr4:183435065:C:T	rs13105651	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr4	183435076	183435077	chr4:183435077:T:G	rs6819955	T	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr4	183472544	183472545	chr4:183472545:G:C	rs78354712	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr4	183541131	183541132	chr4:183541132:A:G	rs56077268	A	G	G	Sox1_MA0870.1	33	0	-	0	0	.
chr4	183559091	183559092	chr4:183559092:G:A	rs751903811	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr4	183576728	183576729	chr4:183576729:C:T	rs116012755	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr4	183620821	183620822	chr4:183620822:G:A	rs10007454	G	A	G	Sox1_MA0870.1	12	1	+	4.887899067704643	-2.020855711610577	GCCCATAGCAGTGTT
chr4	183637738	183637739	chr4:183637739:T:C	rs147294550	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr4	183960207	183960208	chr4:183960208:C:G	rs1379689536	C	G	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr4	184017590	184017591	chr4:184017591:T:C	rs371927714	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	184125356	184125357	chr4:184125357:A:G	rs7689305	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr4	184363387	184363388	chr4:184363388:T:A	rs35410414	T	A	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr4	184479593	184479594	chr4:184479594:G:A	rs7658103	G	A	A	Sox1_MA0870.1	24	0	-	0	0	.
chr4	184535029	184535030	chr4:184535030:G:T	rs13130427	G	T	G	Sox1_MA0870.1	25	0	-	0	0	.
chr4	184613534	184613535	chr4:184613535:C:T	rs28360675	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr4	184613570	184613571	chr4:184613571:A:C	rs6839175	A	C	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr4	184849639	184849640	chr4:184849640:A:G	rs6837920	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr4	184960927	184960928	chr4:184960928:T:G	rs6852984	T	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr4	184960930	184960931	chr4:184960931:C:T	rs6827081	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr4	184960952	184960953	chr4:184960953:G:A	rs4368654	G	A	G	Sox1_MA0870.1	14	1	+	4.068846401953591	3.893515164886547	CACACAGACATTGCG
chr4	184980375	184980376	chr4:184980376:C:T	rs72706985	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr4	185306377	185306378	chr4:185306378:T:G	rs753359	T	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr4	185467188	185467189	chr4:185467189:T:C	rs7677639	T	C	t	Sox1_MA0870.1	32	0	+	0	0	.
chr4	185833244	185833245	chr4:185833245:A:T	rs1262654029	A	T	A	Sox1_MA0870.1	3	1	+	4.065865430383781	-1.4484298756935527	TACAATAGCAGGGCT
chr4	185929049	185929050	chr4:185929050:C:T	rs10013071	C	T	t	Sox1_MA0870.1	2	1	+	5.745424210694855	-1.1633305686203665	CACAATTATAGTGAT
chr4	185933853	185933854	chr4:185933854:A:C	rs74380128	A	C	a	Sox1_MA0870.1	24	0	+	0	0	.
chr4	186012905	186012906	chr4:186012906:C:T	rs75747770	C	T	c	Sox1_MA0870.1	15	0	-	0	0	.
chr4	186033027	186033028	chr4:186033028:G:A	rs10024771	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr4	186051129	186051130	chr4:186051130:T:C	rs7686069	T	C	C	Sox1_MA0870.1	3	1	-	4.291225346781521	-2.6093643204157058	TACATTTGCATTGAT
chr4	186192196	186192197	chr4:186192197:A:C	rs923071642	A	C	a	Sox1_MA0870.1	21	0	-	0	0	.
chr4	186203304	186203305	chr4:186203305:A:C	rs10000459	A	C	A	Sox1_MA0870.1	6	1	-	4.659772579521762	4.094214602095345	AACAATTAGAATGTC
chr4	186627746	186627747	chr4:186627747:C:G	rs561086226	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr4	186773688	186773689	chr4:186773689:C:T	rs13105994	C	T	T	Sox1_MA0870.1	30	0	-	0	0	.
chr4	186851634	186851635	chr4:186851635:A:G	rs28548345	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr4	186875867	186875868	chr4:186875868:A:C	rs172818	A	C	A	Sox1_MA0870.1	17	0	+	0	0	.
chr4	187530403	187530404	chr4:187530404:T:C	rs56181973	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr4	188031736	188031737	chr4:188031737:A:G	rs72722859	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr4	188106983	188106984	chr4:188106984:C:T	rs28706936	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr4	188367677	188367678	chr4:188367678:T:C	rs28666836	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr4	188429108	188429109	chr4:188429109:T:C	rs62351650	T	C	t	Sox1_MA0870.1	-6	0	+	0	0	.
chr4	189203662	189203663	chr4:189203663:T:G	rs73875905	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr4	189203668	189203669	chr4:189203669:G:A	rs7678384	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr4	189203699	189203700	chr4:189203700:G:A	rs7678403	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr4	189341048	189341049	chr4:189341049:C:T	rs34649146	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr4	189375780	189375781	chr4:189375781:T:C	rs114036516	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr4	189476470	189476471	chr4:189476471:C:T	rs1456339	C	T	t	Sox1_MA0870.1	15	0	+	0	0	.
chr4	189809327	189809328	chr4:189809328:T:G	rs73029256	T	G	T	Sox1_MA0870.1	23	0	+	0	0	.
chr5	46312	46313	chr5:46313:C:T	rs6898953	C	T	.	Sox1_MA0870.1	-8	0	+	0	0	.
chr5	220498	220499	chr5:220499:T:C	rs62346526	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr5	346629	346630	chr5:346630:G:C	rs988652571	G	C	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	442559	442560	chr5:442560:C:T	rs139173233	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr5	590342	590343	chr5:590343:T:C	rs72703070	T	C	t	Sox1_MA0870.1	34	0	+	0	0	.
chr5	663888	663889	chr5:663889:G:A	rs112704282	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	757916	757917	chr5:757917:C:T	rs140924588	C	T	c	Sox1_MA0870.1	14	1	+	5.659385596129322	7.170395000610727	GACACTTGCAGTGGC
chr5	757919	757920	chr5:757920:G:C	rs395567	G	C	N	Sox1_MA0870.1	17	0	+	0	0	.
chr5	802240	802241	chr5:802241:T:C	rs141529865	T	C	-	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	840183	840184	chr5:840184:G:T	rs3822814	G	T	g	Sox1_MA0870.1	12	1	+	4.507488551120616	-2.4012662281946042	TTCCATTCCATTGTC
chr5	978652	978653	chr5:978653:G:A	rs80057422	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr5	1213552	1213553	chr5:1213553:G:A	rs7732589	G	A	G	Sox1_MA0870.1	12	1	+	5.551900980680674	-1.3568537986345461	ACCAATGGCATCGTC
chr5	1415513	1415514	chr5:1415514:A:T	rs37022	A	T	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	1437989	1437990	chr5:1437990:T:C	rs1048955	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr5	1442726	1442727	chr5:1442727:C:T	rs13189021	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr5	1601670	1601671	chr5:1601671:C:G	rs6889684	C	G	-	Sox1_MA0870.1	0	1	-	7.63387560025388	7.739701394505653	GACCATGGCATTGTG
chr5	1643696	1643697	chr5:1643697:A:G	rs10475077	A	G	A	Sox1_MA0870.1	1	1	+	3.5339267546456625	-0.5643639007474791	GACACTCCCATTGAG
chr5	1688183	1688184	chr5:1688184:T:C	rs16883201	T	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr5	1703816	1703817	chr5:1703817:C:T	rs56404441	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr5	1703828	1703829	chr5:1703829:C:T	rs56040632	C	T	C	Sox1_MA0870.1	6	1	-	3.1964209228600837	4.735027616000801	CACAAGGCCAGTGCT
chr5	1703847	1703848	chr5:1703848:T:C	rs6884323	T	C	t	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	1794806	1794807	chr5:1794807:T:C	rs4975846	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	1794810	1794811	chr5:1794811:C:T	rs546960284	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	1794830	1794831	chr5:1794831:C:T	rs565352209	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr5	2020159	2020160	chr5:2020160:C:T	rs4074914	C	T	c	Sox1_MA0870.1	29	0	-	0	0	.
chr5	2102822	2102823	chr5:2102823:T:C	rs73732580	T	C	T	Sox1_MA0870.1	4	1	-	4.850103295547981	-1.927474958622207	CACTATGTCAGTGTA
chr5	2113557	2113558	chr5:2113558:C:A	rs11950809	C	A	C	Sox1_MA0870.1	17	0	-	0	0	.
chr5	2400427	2400428	chr5:2400428:G:A	rs469087	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	2400451	2400452	chr5:2400452:A:T	rs468415	A	T	A	Sox1_MA0870.1	9	1	+	5.274086705978584	-1.6346680733366377	GGCACTTACATTGCA
chr5	2497369	2497370	chr5:2497370:A:G	rs462722	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	2539171	2539172	chr5:2539172:A:G	rs6879053	A	G	g	Sox1_MA0870.1	27	0	-	0	0	.
chr5	2629280	2629281	chr5:2629281:G:A	rs1444825472	G	A	G	Sox1_MA0870.1	7	1	+	5.734500935454259	6.131479263250767	TTCACTAGCAGTGCT
chr5	2686464	2686465	chr5:2686465:G:C	rs924217	G	C	A	Sox1_MA0870.1	8	1	-	3.5079253958704997	-0.2625775970298375	CACACTGGCTTTGCT
chr5	2723951	2723952	chr5:2723952:C:T	rs114846434	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr5	3157066	3157067	chr5:3157067:T:A	rs468700	T	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	3157082	3157083	chr5:3157083:C:T	rs469404	C	T	T	Sox1_MA0870.1	13	1	+	6.927423165773456	9.10507846322445	CACAATTGGAGTGCT
chr5	3228770	3228771	chr5:3228771:A:G	rs9313040	A	G	G	Sox1_MA0870.1	9	1	+	3.6787415742845733	-3.2300132050306467	GACACTGGCATTCTA
chr5	3354490	3354491	chr5:3354491:C:T	rs12518360	C	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	3372574	3372575	chr5:3372575:G:T	rs62337538	G	T	T	Sox1_MA0870.1	8	1	-	6.484312696354995	0.5911430420367823	AACAAATACATTGAA
chr5	3414788	3414789	chr5:3414789:C:G	rs138470809	C	G	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr5	3475920	3475921	chr5:3475921:C:T	rs1501839	C	T	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr5	3485471	3485472	chr5:3485472:T:G	rs17685711	T	G	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	4022067	4022068	chr5:4022068:T:G	rs494376	T	G	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	4198693	4198694	chr5:4198694:C:G	rs78287801	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr5	4204795	4204796	chr5:4204796:C:A	rs7734785	C	A	C	Sox1_MA0870.1	34	0	-	0	0	.
chr5	4784543	4784544	chr5:4784544:A:G	rs1173229	A	G	G	Sox1_MA0870.1	3	1	+	10.556943797703196	3.656354130505972	CACAATAACAGTGCC
chr5	4833753	4833754	chr5:4833754:T:C	rs816478	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr5	4921276	4921277	chr5:4921277:A:G	rs1669748	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr5	5136093	5136094	chr5:5136094:T:C	rs7720806	T	C	C	Sox1_MA0870.1	11	1	+	6.557872927656723	1.602477941846388	AACTCTGCCATTGTG
chr5	5260897	5260898	chr5:5260898:C:T	rs2913655	C	T	.	Sox1_MA0870.1	30	0	-	0	0	.
chr5	5693528	5693529	chr5:5693529:A:T	rs256484	A	T	T	Sox1_MA0870.1	0	1	+	5.3653851565923425	3.4267110508898813	AACAAAACCATTTTT
chr5	5928753	5928754	chr5:5928754:G:C	rs1174896	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr5	6087350	6087351	chr5:6087351:T:C	rs307176	T	C	C	Sox1_MA0870.1	27	0	+	0	0	.
chr5	6235188	6235189	chr5:6235189:C:T	rs2964755	C	T	C	Sox1_MA0870.1	10	1	-	4.2479032010116375	-0.31966895456113387	TATACTACCAGTGTT
chr5	6429020	6429021	chr5:6429021:A:G	rs12655198	A	G	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr5	6565804	6565805	chr5:6565805:C:A	rs116766265	C	A	C	Sox1_MA0870.1	21	0	-	0	0	.
chr5	6565819	6565820	chr5:6565820:T:G	rs13185529	T	G	G	Sox1_MA0870.1	6	1	-	6.97658483591805	1.5873858330848476	AACACAAAGATTGTT
chr5	6673422	6673423	chr5:6673423:C:T	rs28434783	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr5	6704023	6704024	chr5:6704024:C:T	rs4701751	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr5	6789269	6789270	chr5:6789270:A:C	rs116682574	A	C	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	6789275	6789276	chr5:6789276:G:A	rs114367387	G	A	g	Sox1_MA0870.1	4	1	+	5.893735184633506	12.671313438803693	AACAGTTACATTGCA
chr5	6873722	6873723	chr5:6873723:A:G	rs151003036	A	G	A	Sox1_MA0870.1	9	1	+	7.227572124856669	0.318817345541448	AACAAGTTCATTGCT
chr5	6887172	6887173	chr5:6887173:A:C	rs990488	A	C	A	Sox1_MA0870.1	34	0	+	0	0	.
chr5	6905687	6905688	chr5:6905688:T:A	rs147255432	T	A	T	Sox1_MA0870.1	0	1	-	4.446842842679805	2.5081687369773453	ACCACTGAGAGTGTT
chr5	7424460	7424461	chr5:7424461:G:C	rs1490782	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	7712407	7712408	chr5:7712408:C:T	rs6883085	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	7755345	7755346	chr5:7755346:G:T	rs140902960	G	T	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr5	7885990	7885991	chr5:7885991:T:C	rs162037	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr5	7887374	7887375	chr5:7887375:A:G	rs13190084	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	8078861	8078862	chr5:8078862:G:A	rs1453362	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr5	8291116	8291117	chr5:8291117:C:T	rs6887466	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	8893266	8893267	chr5:8893267:C:G	rs12522763	C	G	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr5	8893365	8893366	chr5:8893366:A:G	rs2963330	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr5	8919862	8919863	chr5:8919863:A:G	rs2962669	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr5	9194855	9194856	chr5:9194856:T:A	rs40690	T	A	A	Sox1_MA0870.1	22	0	+	0	0	.
chr5	9293100	9293101	chr5:9293101:G:A	rs3822787	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	9316134	9316135	chr5:9316135:C:T	rs13354960	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr5	9361922	9361923	chr5:9361923:G:T	rs1016415257	G	T	G	Sox1_MA0870.1	3	1	-	3.349292374563925	8.4350572996021	GCCCATGGCAGTGTT
chr5	9361934	9361935	chr5:9361935:T:C	rs111467249	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr5	9423721	9423722	chr5:9423722:G:T	rs17258120	G	T	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	9452193	9452194	chr5:9452194:C:T	rs13361369	C	T	C	Sox1_MA0870.1	13	1	+	5.165361993603134	7.343017291054128	TACAATGACATGGCT
chr5	9483359	9483360	chr5:9483360:G:A	rs399271	G	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	9971569	9971570	chr5:9971570:T:C	rs73036428	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr5	10124413	10124414	chr5:10124414:G:T	rs2658099	G	T	G	Sox1_MA0870.1	14	1	+	4.346280432339702	6.071962520057806	AACAATTCCATGGAG
chr5	10220272	10220273	chr5:10220273:T:C	rs66845069	T	C	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr5	10336063	10336064	chr5:10336064:G:A	rs75783352	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	10485680	10485681	chr5:10485681:C:T	rs532202598	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	10548503	10548504	chr5:10548504:A:T	rs12515831	A	T	A	Sox1_MA0870.1	30	0	+	0	0	.
chr5	10725622	10725623	chr5:10725623:T:A	rs5745211	T	A	T	Sox1_MA0870.1	24	0	-	0	0	.
chr5	10725632	10725633	chr5:10725633:T:C	rs4702727	T	C	T	Sox1_MA0870.1	14	1	-	5.599432541253788	5.774763778320832	AGCACTAGGATTGTA
chr5	10725640	10725641	chr5:10725641:T:C	rs5745210	T	C	T	Sox1_MA0870.1	6	1	-	5.599432541253788	4.060825848113068	AGCACTAGGATTGTA
chr5	10762026	10762027	chr5:10762027:A:G	rs6878848	A	G	A	Sox1_MA0870.1	9	1	+	5.433287225724432	-1.4754675535907882	AACATTTGCAGTGTA
chr5	10912804	10912805	chr5:10912805:T:C	rs16901126	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	12193302	12193303	chr5:12193303:G:A	rs2968091	G	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr5	13023122	13023123	chr5:13023123:C:T	rs35700763	C	T	C	Sox1_MA0870.1	7	1	+	9.042392027096122	9.03056297454775	GACAATACCATTCTT
chr5	13026975	13026976	chr5:13026976:T:C	rs111890809	T	C	t	Sox1_MA0870.1	11	1	+	4.885262087854324	-0.07013289795601008	ACCAATATGATTGAC
chr5	13435965	13435966	chr5:13435966:T:C	rs9312827	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	13802236	13802237	chr5:13802237:A:T	rs59430708	A	T	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	13989282	13989283	chr5:13989283:A:C	rs10038542	A	C	A	Sox1_MA0870.1	30	0	-	0	0	.
chr5	14013086	14013087	chr5:14013087:G:A	rs4701593	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr5	14054619	14054620	chr5:14054620:A:G	rs57287421	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr5	14058758	14058759	chr5:14058759:C:A	rs4702013	C	A	C	Sox1_MA0870.1	6	1	-	3.8674851440293265	4.433043121455743	GCCAATGGCAATGTT
chr5	14058759	14058760	chr5:14058760:A:G	rs4702014	A	G	G	Sox1_MA0870.1	5	1	-	3.8674851440293265	-3.035679614618432	GCCAATGGCAATGTT
chr5	14154305	14154306	chr5:14154306:G:A	rs164525	G	A	G	Sox1_MA0870.1	12	1	+	4.014944101721493	-2.8938106775937267	AACACTACCAGGGCT
chr5	14255457	14255458	chr5:14255458:T:G	rs354303	T	G	T	Sox1_MA0870.1	4	1	-	7.561020991116628	5.604208056491412	TACAATTTCACTGTT
chr5	14343202	14343203	chr5:14343203:C:G	rs143640780	C	G	C	Sox1_MA0870.1	4	1	+	3.7990779294152355	-1.021687390129736	GACACTGACTTTGCT
chr5	14394501	14394502	chr5:14394502:A:G	rs378369	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	14414943	14414944	chr5:14414944:C:G	rs30611	C	G	C	Sox1_MA0870.1	28	0	+	0	0	.
chr5	14414963	14414964	chr5:14414964:T:G	rs116791607	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	14452731	14452732	chr5:14452732:T:C	rs27108	T	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr5	14711920	14711921	chr5:14711921:A:G	rs58936946	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr5	14758021	14758022	chr5:14758022:G:A	rs772145182	G	A	G	Sox1_MA0870.1	8	1	-	3.9676575790451447	-0.21395196759213786	GACACTTGCGTTGCT
chr5	14908468	14908469	chr5:14908469:A:G	rs1550825	A	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr5	15021965	15021966	chr5:15021966:G:A	rs79249357	G	A	A	Sox1_MA0870.1	4	1	-	3.8539436012335475	-0.9668217183114237	CCCACTGACATTGGG
chr5	15538228	15538229	chr5:15538229:T:G	rs533011	T	G	G	Sox1_MA0870.1	3	1	-	6.537715660546004	1.4519507355078294	CACAATTTCAATGTG
chr5	15576646	15576647	chr5:15576647:T:C	rs9312894	T	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	15645860	15645861	chr5:15645861:G:A	rs78139386	G	A	G	Sox1_MA0870.1	14	1	-	3.86844281542508	5.379452219906485	GGCAACAACATTGTC
chr5	15687606	15687607	chr5:15687607:G:A	rs16867548	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr5	15752894	15752895	chr5:15752895:A:G	rs111366337	A	G	A	Sox1_MA0870.1	6	1	+	10.108669609180907	8.570062916040188	TTCACTATCATTGTT
chr5	15795416	15795417	chr5:15795417:G:A	rs257779	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr5	15993900	15993901	chr5:15993901:G:A	rs77067734	G	A	G	Sox1_MA0870.1	11	1	-	6.371353482969007	11.32674846877934	AGCAATAGCATCGTA
chr5	16366350	16366351	chr5:16366351:C:A	rs3849096	C	A	c	Sox1_MA0870.1	12	1	-	7.510453129403428	0.6016983500882067	AACAATTCCGTTGTA
chr5	16493565	16493566	chr5:16493566:T:C	rs71595968	T	C	T	Sox1_MA0870.1	4	1	-	7.336853720320375	0.5592754661501876	CACAATAACAGTTTT
chr5	16493586	16493587	chr5:16493587:T:C	rs11133848	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr5	16589740	16589741	chr5:16589741:T:C	rs2451851	T	C	c	Sox1_MA0870.1	22	0	+	0	0	.
chr5	16871113	16871114	chr5:16871114:G:T	rs253315	G	T	T	Sox1_MA0870.1	30	0	+	0	0	.
chr5	16881238	16881239	chr5:16881239:C:G	rs4702179	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr5	16987023	16987024	chr5:16987024:G:A	rs3853122	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	17000599	17000600	chr5:17000600:A:G	rs954604	A	G	A	Sox1_MA0870.1	10	1	-	7.642903493391296	0.8342064092549625	GTCAAAATCATTGTT
chr5	17180757	17180758	chr5:17180758:C:G	rs116725896	C	G	C	Sox1_MA0870.1	16	0	-	0	0	.
chr5	17259264	17259265	chr5:17259265:C:T	rs7700449	C	T	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	17428516	17428517	chr5:17428517:C:T	rs142001602	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	17605217	17605218	chr5:17605218:C:T	rs7736811	C	T	c	Sox1_MA0870.1	29	0	+	0	0	.
chr5	17895625	17895626	chr5:17895626:C:G	rs67550057	C	G	C	Sox1_MA0870.1	20	0	-	0	0	.
chr5	17895636	17895637	chr5:17895637:T:C	rs3932273	T	C	T	Sox1_MA0870.1	9	1	-	6.939875392523868	0.03112061320864823	CACAATAGCAGTTTT
chr5	18020237	18020238	chr5:18020238:G:T	rs1390633	G	T	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr5	18048573	18048574	chr5:18048574:C:T	rs13186768	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	18069124	18069125	chr5:18069125:A:G	rs633230	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr5	18069135	18069136	chr5:18069136:T:C	rs633217	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr5	18318187	18318188	chr5:18318188:A:T	rs2962895	A	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr5	18488220	18488221	chr5:18488221:A:G	rs75485994	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr5	18984308	18984309	chr5:18984309:T:C	rs12659472	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr5	19243406	19243407	chr5:19243407:C:A	rs12518540	C	A	C	Sox1_MA0870.1	23	0	-	0	0	.
chr5	19243437	19243438	chr5:19243438:T:C	rs6884800	T	C	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr5	19533009	19533010	chr5:19533010:G:C	rs1689680	G	C	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	19563389	19563390	chr5:19563390:G:A	rs770317	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr5	19715390	19715391	chr5:19715391:T:C	rs7734875	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr5	19902843	19902844	chr5:19902844:T:C	rs12658322	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr5	19929178	19929179	chr5:19929179:C:T	rs1911845	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr5	19929200	19929201	chr5:19929201:A:G	rs149606401	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	19950985	19950986	chr5:19950986:A:G	rs2089556	A	G	G	Sox1_MA0870.1	10	1	-	5.274026722916715	-1.5346703612196189	ATCACTGCCATTGAA
chr5	20283968	20283969	chr5:20283969:T:C	rs11949349	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr5	21160461	21160462	chr5:21160462:C:T	rs371821	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr5	21219446	21219447	chr5:21219447:G:C	rs294711	G	C	C	Sox1_MA0870.1	26	0	-	0	0	.
chr5	21497161	21497162	chr5:21497162:T:A	rs4701278	T	A	.	Sox1_MA0870.1	22	0	+	0	0	.
chr5	22425960	22425961	chr5:22425961:A:G	rs11948247	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr5	22501551	22501552	chr5:22501552:C:T	rs72744896	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	23840251	23840252	chr5:23840252:T:C	rs185801068	T	C	T	Sox1_MA0870.1	14	1	-	6.048603357534902	6.223934594601946	GACCATAACATTGAA
chr5	23996780	23996781	chr5:23996781:G:A	rs6863680	G	A	N	Sox1_MA0870.1	25	0	+	0	0	.
chr5	24354069	24354070	chr5:24354070:C:T	rs10520915	C	T	C	Sox1_MA0870.1	0	1	-	4.841924907360896	6.18404805016765	GACCATATGAGTGTT
chr5	24691443	24691444	chr5:24691444:T:C	rs10070341	T	C	C	Sox1_MA0870.1	7	1	+	4.976558731914949	4.988387784463322	AACAATATGACTGTG
chr5	24789575	24789576	chr5:24789576:T:A	rs77978088	T	A	T	Sox1_MA0870.1	30	0	-	0	0	.
chr5	25007183	25007184	chr5:25007184:A:G	rs11741737	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr5	25478484	25478485	chr5:25478485:G:A	rs17525483	G	A	g	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	25509592	25509593	chr5:25509593:C:T	rs7715794	C	T	c	Sox1_MA0870.1	31	0	+	0	0	.
chr5	25766710	25766711	chr5:25766711:A:G	rs35177822	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr5	25976026	25976027	chr5:25976027:A:T	rs72750946	A	T	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr5	26803252	26803253	chr5:26803253:C:G	rs62343985	C	G	C	Sox1_MA0870.1	6	1	-	5.652496075911209	1.8019037662187247	AACAAAGTCATTGAG
chr5	26918848	26918849	chr5:26918849:G:T	rs10942217	G	T	G	Sox1_MA0870.1	29	0	+	0	0	.
chr5	27551559	27551560	chr5:27551560:C:A	rs13179277	C	A	C	Sox1_MA0870.1	26	0	+	0	0	.
chr5	27844609	27844610	chr5:27844610:G:A	rs6450568	G	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	28926928	28926929	chr5:28926929:A:G	rs434405	A	G	g	Sox1_MA0870.1	30	0	-	0	0	.
chr5	28926939	28926940	chr5:28926940:T:C	rs949852840	T	C	t	Sox1_MA0870.1	19	0	-	0	0	.
chr5	29002263	29002264	chr5:29002264:T:G	rs36080912	T	G	T	Sox1_MA0870.1	30	0	-	0	0	.
chr5	29065165	29065166	chr5:29065166:C:T	rs583234	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr5	29162203	29162204	chr5:29162204:T:C	rs17553762	T	C	T	Sox1_MA0870.1	4	1	-	5.314686505078162	-1.4628917490920261	TGCAATATCAGTGCC
chr5	29390582	29390583	chr5:29390583:C:T	rs4867174	C	T	c	Sox1_MA0870.1	6	1	+	3.519369943914749	7.935520231033651	GACCCTCCCATTGTT
chr5	29510556	29510557	chr5:29510557:T:A	rs1394673	T	A	T	Sox1_MA0870.1	5	1	-	5.915966824740533	10.935096838051066	CACAAATGTATTGTT
chr5	30050229	30050230	chr5:30050230:G:A	rs17510317	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	30894675	30894676	chr5:30894676:A:G	rs2330615	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	30941114	30941115	chr5:30941115:T:C	rs1276165	T	C	T	Sox1_MA0870.1	14	1	+	5.3978155582628204	3.8868061537814156	CACACTGGCAGCGTT
chr5	30997705	30997706	chr5:30997706:A:G	rs1500169	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	31347606	31347607	chr5:31347607:T:A	rs481823	T	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr5	31347612	31347613	chr5:31347613:C:T	rs481801	C	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr5	31442516	31442517	chr5:31442517:A:G	rs16901168	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr5	31697011	31697012	chr5:31697012:A:G	rs450484	A	G	A	Sox1_MA0870.1	13	1	-	7.719501733381494	5.541846435930501	CACAATTAAATTGTA
chr5	31863313	31863314	chr5:31863314:A:T	rs62361595	A	T	A	Sox1_MA0870.1	22	0	-	0	0	.
chr5	32058008	32058009	chr5:32058009:A:G	rs151861	A	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr5	32098793	32098794	chr5:32098794:T:C	rs187241440	T	C	T	Sox1_MA0870.1	13	1	+	8.127123401381075	5.949468103930082	TACAAAAGCAGTGTT
chr5	32434339	32434340	chr5:32434340:C:T	rs71629079	C	T	c	Sox1_MA0870.1	21	0	+	0	0	.
chr5	32434348	32434349	chr5:32434349:T:C	rs71629080	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr5	32490452	32490453	chr5:32490453:C:T	rs16889807	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr5	32535072	32535073	chr5:32535073:A:G	rs671118	A	G	A	Sox1_MA0870.1	1	1	+	3.3101783747892815	-0.7881122806038589	CACAGTGTCAGTGCT
chr5	32740736	32740737	chr5:32740737:G:A	rs75895578	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	32790811	32790812	chr5:32790812:G:C	rs73073697	G	C	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	33102172	33102173	chr5:33102173:C:T	rs143838165	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	33276782	33276783	chr5:33276783:C:T	rs75181101	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr5	33338561	33338562	chr5:33338562:T:C	rs10040888	T	C	C	Sox1_MA0870.1	9	1	-	4.506770534576674	-2.4019842447385473	CAGAATAACATTGAG
chr5	33364577	33364578	chr5:33364578:C:T	rs268731	C	T	T	Sox1_MA0870.1	32	0	-	0	0	.
chr5	33525215	33525216	chr5:33525216:C:T	rs27405	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr5	33680242	33680243	chr5:33680243:G:A	rs35953152	G	A	G	Sox1_MA0870.1	2	1	-	11.097534425365955	4.188779646050734	CACAATCACATTGTT
chr5	33714292	33714293	chr5:33714293:G:T	rs11738966	G	T	G	Sox1_MA0870.1	33	0	-	0	0	.
chr5	33815280	33815281	chr5:33815281:T:A	rs984665	T	A	T	Sox1_MA0870.1	9	1	-	3.4556026653812015	-3.4531521139340198	CACACTGGGATTGGG
chr5	34184167	34184168	chr5:34184168:T:C	rs6893751	T	C	N	Sox1_MA0870.1	31	0	-	0	0	.
chr5	34329313	34329314	chr5:34329314:A:C	rs11747776	A	C	-	Sox1_MA0870.1	15	0	+	0	0	.
chr5	34468653	34468654	chr5:34468654:A:G	rs6451125	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	34762060	34762061	chr5:34762061:A:G	rs164311	A	G	G	Sox1_MA0870.1	5	1	-	10.815217110513672	3.9120523518659125	CACAATAAGATTGTA
chr5	34786634	34786635	chr5:34786635:T:G	rs11957373	T	G	G	Sox1_MA0870.1	5	1	+	4.113334145995864	-2.7898306126518935	ACCACTGGGATTGCT
chr5	35164718	35164719	chr5:35164719:A:G	rs16872490	A	G	G	Sox1_MA0870.1	7	1	-	4.808032335415979	4.819861387964353	CTCCATTTCATTGTA
chr5	35488258	35488259	chr5:35488259:C:A	rs77028340	C	A	C	Sox1_MA0870.1	7	1	-	3.4081216940771157	3.363510141789209	GACACTGGCATAGCT
chr5	35820178	35820179	chr5:35820179:C:T	rs186372714	C	T	C	Sox1_MA0870.1	2	1	+	5.7127045918870145	-1.1960501874282077	TACACATGCATTGTG
chr5	35871087	35871088	chr5:35871088:G:A	rs1494555	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr5	35971937	35971938	chr5:35971938:A:T	rs62352018	A	T	T	Sox1_MA0870.1	10	1	-	4.928457003284704	-1.8802400808516295	CACACTTACATGGTG
chr5	36066254	36066255	chr5:36066255:C:T	rs2012367	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr5	36168668	36168669	chr5:36168669:T:A	rs13190112	T	A	T	Sox1_MA0870.1	24	0	-	0	0	.
chr5	36361593	36361594	chr5:36361594:G:T	rs4413557	G	T	T	Sox1_MA0870.1	30	0	+	0	0	.
chr5	36452696	36452697	chr5:36452697:T:A	rs16903050	T	A	T	Sox1_MA0870.1	22	0	-	0	0	.
chr5	36452722	36452723	chr5:36452723:C:G	rs2468511	C	G	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr5	36691074	36691075	chr5:36691075:T:C	rs56407459	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr5	37735746	37735747	chr5:37735747:A:G	rs2910798	A	G	A	Sox1_MA0870.1	11	1	-	5.1387401056895925	0.18334511987925772	CTCAATTACAGTGAC
chr5	38046524	38046525	chr5:38046525:C:T	rs448468	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr5	38284605	38284606	chr5:38284606:G:A	rs6871786	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr5	38353377	38353378	chr5:38353378:C:T	rs2589811	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	38535827	38535828	chr5:38535828:C:T	rs184131872	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr5	38591075	38591076	chr5:38591076:A:G	rs115440380	A	G	A	Sox1_MA0870.1	0	1	-	4.8782324232454854	5.580609180392966	TACTATTACAGTGCT
chr5	38753346	38753347	chr5:38753347:C:A	rs75845289	C	A	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr5	39139132	39139133	chr5:39139133:A:T	rs183642364	A	T	A	Sox1_MA0870.1	22	0	+	0	0	.
chr5	39374031	39374032	chr5:39374032:T:C	rs184056041	T	C	.	Sox1_MA0870.1	10	1	+	6.865877930808106	0.05718084667177337	AACACAGTCATTGTA
chr5	39471073	39471074	chr5:39471074:T:C	rs3909475	T	C	C	Sox1_MA0870.1	7	1	+	8.137151209458404	8.148980262006777	AACAACATCAGTGTT
chr5	39476685	39476686	chr5:39476686:T:C	rs113286996	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr5	39618576	39618577	chr5:39618577:G:A	rs12697393	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr5	39625525	39625526	chr5:39625526:T:A	rs34346322	T	A	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	39633944	39633945	chr5:39633945:C:T	rs74863238	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr5	39799378	39799379	chr5:39799379:C:T	rs56098596	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr5	40046559	40046560	chr5:40046560:T:C	rs2939374	T	C	C	Sox1_MA0870.1	10	1	+	5.920737868050589	-0.8879592160857457	ATCACTTTCATTGGC
chr5	40189050	40189051	chr5:40189051:C:G	rs353376	C	G	C	Sox1_MA0870.1	12	1	-	3.9981889654042995	-2.910565813910921	AGCTCTACCATTGTG
chr5	40385138	40385139	chr5:40385139:A:T	rs12523046	A	T	T	Sox1_MA0870.1	19	0	+	0	0	.
chr5	40411059	40411060	chr5:40411060:C:T	rs188122145	C	T	C	Sox1_MA0870.1	2	1	+	4.661984321488562	-2.2467704578266585	GACAAGAGCAGTGCT
chr5	40411079	40411080	chr5:40411080:T:C	rs939781210	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr5	40688222	40688223	chr5:40688223:G:A	rs45446993	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr5	41334313	41334314	chr5:41334314:C:T	rs72755968	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr5	41405145	41405146	chr5:41405146:A:G	rs79025340	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr5	42426319	42426320	chr5:42426320:C:T	rs369651887	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr5	42804012	42804013	chr5:42804013:T:C	rs13168440	T	C	T	Sox1_MA0870.1	0	1	+	13.606701373600682	14.309078130748162	TACAATAACATTGCT
chr5	42855866	42855867	chr5:42855867:A:G	rs61371942	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr5	43001498	43001499	chr5:43001499:T:C	rs1542369	T	C	T	Sox1_MA0870.1	11	1	+	3.481676823692615	-1.4737181621177182	AACAATTCCAGTACC
chr5	43316037	43316038	chr5:43316038:A:C	rs1015795195	A	C	A	Sox1_MA0870.1	27	0	-	0	0	.
chr5	43476442	43476443	chr5:43476443:T:G	rs6896693	T	G	T	Sox1_MA0870.1	10	1	+	4.53864347145491	2.2975185428913494	CACAATTCCATAGGT
chr5	44390449	44390450	chr5:44390450:T:C	rs78761206	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	44497871	44497872	chr5:44497872:G:A	rs78946941	G	A	G	Sox1_MA0870.1	7	1	+	8.616342040036148	9.013320367832655	AACAATAGCACTGTA
chr5	44571111	44571112	chr5:44571112:G:A	rs57607823	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	46297142	46297143	chr5:46297143:T:C	rs4975911	T	C	.	Sox1_MA0870.1	0	1	+	8.524101729177582	9.226478486325062	TACAAAAACAGTGTT
chr5	49656304	49656305	chr5:49656305:C:A	chr5:49656305:C:A	C	A	.	Sox1_MA0870.1	2	1	+	4.0965004833974525	-2.8122542959177683	CACAATTCCATTCCA
chr5	49656892	49656893	chr5:49656893:A:T	chr5:49656893:A:T	A	T	.	Sox1_MA0870.1	-6	0	+	0	0	.
chr5	49656914	49656915	chr5:49656915:T:A	chr5:49656915:T:A	T	A	.	Sox1_MA0870.1	16	0	+	0	0	.
chr5	49657256	49657257	chr5:49657257:C:G	rs1173104674	C	G	.	Sox1_MA0870.1	33	0	+	0	0	.
chr5	49657517	49657518	chr5:49657518:C:A	rs1228652875	C	A	.	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	49657527	49657528	chr5:49657528:A:G	chr5:49657528:A:G	A	G	.	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	49657545	49657546	chr5:49657546:C:A	rs1374461714	C	A	.	Sox1_MA0870.1	17	0	+	0	0	.
chr5	49658019	49658020	chr5:49658020:G:C	rs1316647019	G	C	.	Sox1_MA0870.1	12	1	+	11.005255262712673	4.0965004833974525	CACAATTCCATTGCA
chr5	49658038	49658039	chr5:49658039:C:T	rs1248762273	C	T	.	Sox1_MA0870.1	31	0	+	0	0	.
chr5	49666297	49666298	chr5:49666298:C:A	rs1347147889	C	A	.	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	49666343	49666344	chr5:49666344:C:A	chr5:49666344:C:A	C	A	.	Sox1_MA0870.1	28	0	+	0	0	.
chr5	50036398	50036399	chr5:50036399:G:C	rs1374618442	G	C	.	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	50709691	50709692	chr5:50709692:T:G	rs1375127	T	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr5	50709705	50709706	chr5:50709706:C:T	rs77502439	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr5	50901160	50901161	chr5:50901161:C:T	rs72756179	C	T	C	Sox1_MA0870.1	4	1	+	9.790202791535375	4.969437471990403	ATCACTTACATTGTG
chr5	51495252	51495253	chr5:51495253:T:A	rs77972482	T	A	A	Sox1_MA0870.1	4	1	-	5.361480284882138	-1.416097969288049	GCCAATATCACTGTT
chr5	51495253	51495254	chr5:51495254:T:G	rs80099492	T	G	G	Sox1_MA0870.1	3	1	-	5.361480284882138	0.27571535984396445	GCCAATATCACTGTT
chr5	51841482	51841483	chr5:51841483:T:A	rs3111104	T	A	T	Sox1_MA0870.1	15	0	-	0	0	.
chr5	52063117	52063118	chr5:52063118:C:G	rs10070998	C	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	52453507	52453508	chr5:52453508:C:A	rs17260318	C	A	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr5	53560656	53560657	chr5:53560657:A:T	rs73754255	A	T	A	Sox1_MA0870.1	31	0	-	0	0	.
chr5	53560673	53560674	chr5:53560674:G:C	rs2279516	G	C	C	Sox1_MA0870.1	14	1	-	5.60193533307314	5.38726264983644	ACCACTGACATTGAC
chr5	53560699	53560700	chr5:53560700:C:A	chr5:53560700:C:A	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr5	53598043	53598044	chr5:53598044:A:G	rs12522861	A	G	A	Sox1_MA0870.1	14	1	-	8.855422769175627	7.344413364694223	TACTATTTCATTGTT
chr5	53648597	53648598	chr5:53648598:T:C	rs10513019	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	53650348	53650349	chr5:53650349:A:G	rs72753660	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	53838729	53838730	chr5:53838730:T:C	rs10940344	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr5	54278263	54278264	chr5:54278264:C:T	rs114214008	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	54388093	54388094	chr5:54388094:A:T	rs4865570	A	T	T	Sox1_MA0870.1	20	0	-	0	0	.
chr5	54401726	54401727	chr5:54401727:C:A	rs59995759	C	A	C	Sox1_MA0870.1	10	1	-	5.395315612970014	7.636440541533574	TTCACTTCCAGTGTC
chr5	54458715	54458716	chr5:54458716:G:C	rs72762097	G	C	G	Sox1_MA0870.1	23	0	-	0	0	.
chr5	54520951	54520952	chr5:54520952:T:C	rs2564990	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr5	54537732	54537733	chr5:54537733:A:G	rs11744803	A	G	G	Sox1_MA0870.1	11	1	-	6.639099299383429	1.6837043135730947	GGCAATAGCATTGAA
chr5	54590779	54590780	chr5:54590780:C:T	rs2565009	C	T	C	Sox1_MA0870.1	10	1	-	3.257380370180547	-1.3101917853922256	CACACTAGCCGTGTG
chr5	54621661	54621662	chr5:54621662:C:T	rs72754020	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	54735382	54735383	chr5:54735383:A:G	rs12516335	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr5	54739631	54739632	chr5:54739632:C:T	rs4410612	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr5	54985069	54985070	chr5:54985070:C:G	rs999289	C	G	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	55143684	55143685	chr5:55143685:A:C	rs191396	A	C	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr5	55303231	55303232	chr5:55303232:C:T	chr5:55303232:C:T	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr5	56183644	56183645	chr5:56183645:A:C	rs6871908	A	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr5	56350218	56350219	chr5:56350219:T:C	rs158494	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	56355749	56355750	chr5:56355750:A:T	rs1997522	A	T	A	Sox1_MA0870.1	3	1	+	5.077731441109421	-0.43656386496791344	AACACTGACAGTTTT
chr5	56360736	56360737	chr5:56360737:C:T	rs12523475	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr5	56406632	56406633	chr5:56406633:C:T	rs286012	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr5	56419039	56419040	chr5:56419040:A:T	rs286017	A	T	A	Sox1_MA0870.1	17	0	-	0	0	.
chr5	56458287	56458288	chr5:56458288:T:C	rs9292116	T	C	C	Sox1_MA0870.1	5	1	+	8.457967192517316	1.5548024338695563	AGCAATTTCAGTGTC
chr5	56458310	56458311	chr5:56458311:A:T	rs17713262	A	T	A	Sox1_MA0870.1	28	0	+	0	0	.
chr5	56482255	56482256	chr5:56482256:T:G	rs574427114	T	G	T	Sox1_MA0870.1	20	0	-	0	0	.
chr5	56616822	56616823	chr5:56616823:A:G	chr5:56616823:A:G	A	G	A	Sox1_MA0870.1	13	1	-	4.497803744513223	2.320148447062229	CACCAGAACATTGTT
chr5	56735424	56735425	chr5:56735425:A:G	rs35785124	A	G	A	Sox1_MA0870.1	1	1	+	5.532763600057175	1.4344729446640343	AAGAATAAGATTGTC
chr5	56738199	56738200	chr5:56738200:C:T	rs189759201	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr5	56746460	56746461	chr5:56746461:T:C	rs4312834	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr5	56818698	56818699	chr5:56818699:T:G	rs702691	T	G	T	Sox1_MA0870.1	19	0	+	0	0	.
chr5	56984285	56984286	chr5:56984286:C:G	rs76768919	C	G	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr5	57175111	57175112	chr5:57175112:G:T	rs73757313	G	T	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	57494538	57494539	chr5:57494539:C:T	rs1009204696	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr5	57751139	57751140	chr5:57751140:T:C	rs10054371	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	58294980	58294981	chr5:58294981:T:G	rs62366313	T	G	T	Sox1_MA0870.1	11	1	+	8.033603856670332	1.1308711698135	GACAATGACACTGTT
chr5	58326946	58326947	chr5:58326947:A:G	rs151914	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	58453567	58453568	chr5:58453568:T:A	rs10471451	T	A	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr5	58619426	58619427	chr5:58619427:G:C	rs10055649	G	C	G	Sox1_MA0870.1	2	1	-	8.893836038410592	1.985081259095372	AACAATTGGATTGCC
chr5	58853743	58853744	chr5:58853744:C:T	rs295675	C	T	C	Sox1_MA0870.1	12	1	-	4.481596888807282	-2.4271578905079383	CTCACTTCCATTGGG
chr5	58853755	58853756	chr5:58853756:G:A	rs295676	G	A	A	Sox1_MA0870.1	0	1	-	4.481596888807282	3.7792201316598018	CTCACTTCCATTGGG
chr5	58860862	58860863	chr5:58860863:T:C	rs9292180	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr5	58998863	58998864	chr5:58998864:G:C	rs4700316	G	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	59246490	59246491	chr5:59246491:G:A	rs27187	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	59359913	59359914	chr5:59359914:A:C	rs35281	A	C	C	Sox1_MA0870.1	11	1	-	7.038939688920771	0.13620700206393854	AACAATTGGATTGGA
chr5	59413184	59413185	chr5:59413185:C:T	rs258126	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	59733057	59733058	chr5:59733058:A:G	rs79162970	A	G	A	Sox1_MA0870.1	3	1	+	5.535143346781815	-1.3654463204154106	GACACTGTCCTTGTT
chr5	59746050	59746051	chr5:59746051:A:C	rs7709094	A	C	A	Sox1_MA0870.1	15	0	+	0	0	.
chr5	59763872	59763873	chr5:59763873:A:G	rs6869978	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr5	59799222	59799223	chr5:59799223:C:G	rs111672810	C	G	C	Sox1_MA0870.1	8	1	+	4.67427849571467	0.9037755028143328	AACAGTTTCATTGAC
chr5	59831435	59831436	chr5:59831436:T:G	rs73092830	T	G	T	Sox1_MA0870.1	21	0	-	0	0	.
chr5	59941297	59941298	chr5:59941298:T:C	rs2916866	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr5	59943817	59943818	chr5:59943818:T:G	rs4476687	T	G	T	Sox1_MA0870.1	12	1	+	8.42770223527766	15.336457014592881	AACACTACCATTTTT
chr5	60022889	60022890	chr5:60022890:A:G	rs13154041	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr5	60206708	60206709	chr5:60206709:T:A	chr5:60206709:T:A	T	A	T	Sox1_MA0870.1	17	0	-	0	0	.
chr5	60206739	60206740	chr5:60206740:G:A	chr5:60206740:G:A	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	60768509	60768510	chr5:60768510:G:A	rs1460959	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	60795123	60795124	chr5:60795124:C:G	rs10076679	C	G	C	Sox1_MA0870.1	34	0	+	0	0	.
chr5	60830474	60830475	chr5:60830475:A:T	rs72757152	A	T	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	61048571	61048572	chr5:61048572:T:C	rs12520484	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	61048627	61048628	chr5:61048628:C:T	rs34644	C	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	61055742	61055743	chr5:61055743:C:T	rs376948235	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr5	61312566	61312567	chr5:61312567:G:A	rs1424483529	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr5	61327816	61327817	chr5:61327817:C:G	rs114874908	C	G	C	Sox1_MA0870.1	0	1	-	3.8479031317625387	3.953728926014312	GAAAATGGCATTGCC
chr5	61640267	61640268	chr5:61640268:T:C	rs26912	T	C	T	Sox1_MA0870.1	0	1	-	4.447758237374336	3.105635094567583	AGCAAAGTCATTGCT
chr5	62152674	62152675	chr5:62152675:T:C	chr5:62152675:T:C	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	62267758	62267759	chr5:62267759:G:A	rs1995782	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr5	62384620	62384621	chr5:62384621:T:C	rs152189	T	C	T	Sox1_MA0870.1	4	1	-	5.112390364208499	-1.6651878899616883	TTCAATAACAGTGGC
chr5	62714264	62714265	chr5:62714265:C:T	rs10434535	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr5	62721145	62721146	chr5:62721146:A:G	rs1486807407	A	G	A	Sox1_MA0870.1	6	1	-	4.135318794839689	-0.2808314922792111	GAAAATTGCAGTGTG
chr5	63155436	63155437	chr5:63155437:G:C	rs1973393	G	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr5	63428813	63428814	chr5:63428814:A:G	rs553673985	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr5	63451193	63451194	chr5:63451194:G:A	rs4426873	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr5	64622605	64622606	chr5:64622606:T:C	rs6864394	T	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr5	64769356	64769357	chr5:64769357:C:A	rs59929214	C	A	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr5	64979709	64979710	chr5:64979710:T:G	rs1309577	T	G	G	Sox1_MA0870.1	25	0	-	0	0	.
chr5	65022005	65022006	chr5:65022006:T:A	rs266554	T	A	A	Sox1_MA0870.1	1	1	-	5.6924212329278845	2.415136985766746	GAGAATGACAGTGTT
chr5	65035189	65035190	chr5:65035190:T:C	rs6896396	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	65214136	65214137	chr5:65214137:G:T	chr5:65214137:G:T	G	T	G	Sox1_MA0870.1	30	0	+	0	0	.
chr5	65811169	65811170	chr5:65811170:G:A	rs114391609	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr5	65825686	65825687	chr5:65825687:G:A	rs17244346	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	65835525	65835526	chr5:65835526:C:G	rs71632542	C	G	C	Sox1_MA0870.1	8	1	+	3.6681811660301893	-0.10232182687014701	CTCAAGAGCAGTGTT
chr5	66273663	66273664	chr5:66273664:C:G	rs4700107	C	G	C	Sox1_MA0870.1	29	0	+	0	0	.
chr5	66441132	66441133	chr5:66441133:A:G	rs188072131	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr5	66524837	66524838	chr5:66524838:A:G	rs12659904	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr5	66598633	66598634	chr5:66598634:T:G	rs7700850	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	66617412	66617413	chr5:66617413:T:A	rs4073361	T	A	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr5	66802730	66802731	chr5:66802731:C:T	rs33725	C	T	T	Sox1_MA0870.1	11	1	+	5.644049927474908	10.599444913285241	AACACTTTCAGCGTC
chr5	66826828	66826829	chr5:66826829:A:G	rs17214805	A	G	A	Sox1_MA0870.1	10	1	-	4.848926546205362	-1.9597705379309702	TACAGTGTCATTGCT
chr5	67063457	67063458	chr5:67063458:T:A	rs77591491	T	A	T	Sox1_MA0870.1	0	1	+	10.96846573074982	12.907139836452279	TTCAATGACATTGTT
chr5	67180022	67180023	chr5:67180023:T:A	rs6890674	T	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr5	67244858	67244859	chr5:67244859:C:T	rs11739603	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr5	67258619	67258620	chr5:67258620:A:G	rs17224193	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr5	67401180	67401181	chr5:67401181:G:A	rs114894651	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr5	67669057	67669058	chr5:67669058:C:A	rs68113962	C	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr5	67669090	67669091	chr5:67669091:T:C	rs34298499	T	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	67957236	67957237	chr5:67957237:T:C	rs1948330	T	C	T	Sox1_MA0870.1	11	1	+	7.456582828011279	2.501187842200945	CACAATACTAGTGCT
chr5	68010925	68010926	chr5:68010926:A:G	rs13358352	A	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr5	68010947	68010948	chr5:68010948:G:C	rs281441	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	68149428	68149429	chr5:68149429:A:G	rs78014415	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr5	68287042	68287043	chr5:68287043:T:C	rs67913607	T	C	C	Sox1_MA0870.1	11	1	+	9.348612911450962	4.393217925640627	ATCACTTTCATTGTG
chr5	68287046	68287047	chr5:68287047:G:A	rs68180970	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr5	68365068	68365069	chr5:68365069:C:T	rs256500	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr5	68385406	68385407	chr5:68385407:C:A	rs16897779	C	A	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr5	68529305	68529306	chr5:68529306:A:C	rs56132153	A	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr5	68611306	68611307	chr5:68611307:A:G	rs1071213	A	G	G	Sox1_MA0870.1	32	0	+	0	0	.
chr5	68772101	68772102	chr5:68772102:A:G	rs33293	A	G	G	Sox1_MA0870.1	1	1	+	3.8414340925544415	-0.25685656283869973	CACACTGACAGTTTT
chr5	68921981	68921982	chr5:68921982:A:G	rs7715111	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr5	68924011	68924012	chr5:68924012:G:T	rs6886719	G	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr5	71569770	71569771	chr5:71569771:G:T	rs467563	G	T	G	Sox1_MA0870.1	7	1	+	2.813953532448271	2.7693419801603643	CACACTCGCAGTGCC
chr5	71801196	71801197	chr5:71801197:C:A	rs1516800	C	A	A	Sox1_MA0870.1	7	1	-	4.0734833732969165	4.028871821009009	CACACTTGCATTTCT
chr5	71961489	71961490	chr5:71961490:T:C	rs2662330	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr5	72238725	72238726	chr5:72238726:A:G	rs12697910	A	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr5	72294699	72294700	chr5:72294700:G:A	rs73127296	G	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr5	72445962	72445963	chr5:72445963:C:T	rs7710292	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr5	72448540	72448541	chr5:72448541:T:A	rs10069831	T	A	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr5	72451255	72451256	chr5:72451256:A:G	rs12697709	A	G	G	Sox1_MA0870.1	13	1	-	3.841434092554441	1.6637787951034468	CACACTGACGGTGTT
chr5	72507877	72507878	chr5:72507878:T:C	rs11745483	T	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr5	72507915	72507916	chr5:72507916:G:A	rs76632674	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr5	72597084	72597085	chr5:72597085:G:A	rs33425	G	A	A	Sox1_MA0870.1	4	1	-	10.662914544397808	5.842149224852836	AACACTTTCATTGCC
chr5	72878969	72878970	chr5:72878970:G:A	rs73762224	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr5	73229463	73229464	chr5:73229464:T:G	rs115946512	T	G	T	Sox1_MA0870.1	26	0	-	0	0	.
chr5	73281151	73281152	chr5:73281152:A:G	rs73106035	A	G	A	Sox1_MA0870.1	3	1	+	3.3004885353834297	-3.600101131813796	AACACTGCCAATGCC
chr5	73592454	73592455	chr5:73592455:G:T	rs2544654	G	T	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr5	73615406	73615407	chr5:73615407:T:C	rs192905379	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr5	73964973	73964974	chr5:73964974:C:T	rs399072	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr5	74021562	74021563	chr5:74021563:A:G	rs9293615	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr5	74037368	74037369	chr5:74037369:A:G	rs147203562	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr5	74384418	74384419	chr5:74384419:T:C	rs539548208	T	C	t	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	74594529	74594530	chr5:74594530:C:T	rs73765022	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr5	74935048	74935049	chr5:74935049:C:T	rs80204980	C	T	C	Sox1_MA0870.1	8	1	+	4.92957562529074	0.7479660786534592	ATCAATACCATTTCT
chr5	74954634	74954635	chr5:74954635:G:T	rs4571453	G	T	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	75277657	75277658	chr5:75277658:C:T	rs114791351	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr5	75510924	75510925	chr5:75510925:G:A	rs1035503570	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	75510960	75510961	chr5:75510961:T:C	chr5:75510961:T:C	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr5	75533939	75533940	chr5:75533940:A:G	rs150397862	A	G	A	Sox1_MA0870.1	0	1	-	8.42262345287158	9.12500021001906	TACAAAATCATTGTA
chr5	75641314	75641315	chr5:75641315:C:A	rs181441553	C	A	C	Sox1_MA0870.1	12	1	-	5.31474147772395	-1.594013301591271	GACAAAGCCATTGCA
chr5	75668302	75668303	chr5:75668303:C:T	rs34357	C	T	t	Sox1_MA0870.1	16	0	+	0	0	.
chr5	75818938	75818939	chr5:75818939:G:T	rs4317299	G	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	76367971	76367972	chr5:76367972:C:G	rs79668711	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr5	76368002	76368003	chr5:76368003:T:G	rs74841731	T	G	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr5	76396667	76396668	chr5:76396668:C:T	rs878199	C	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	76424823	76424824	chr5:76424824:G:A	rs10077372	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	76708502	76708503	chr5:76708503:T:C	rs153316	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr5	76818698	76818699	chr5:76818699:A:G	rs2242989	A	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr5	76831309	76831310	chr5:76831310:G:A	rs2243057	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr5	77028940	77028941	chr5:77028941:T:C	rs17682661	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr5	77159701	77159702	chr5:77159702:G:A	rs10036159	G	A	g	Sox1_MA0870.1	-20	0	+	0	0	.
chr5	77258772	77258773	chr5:77258773:C:T	rs10066037	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr5	77301598	77301599	chr5:77301599:C:T	rs888379660	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	77449647	77449648	chr5:77449648:A:C	rs146848902	A	C	A	Sox1_MA0870.1	9	1	+	3.653193024262921	-3.2555617550523	GACAATCCCATTATT
chr5	77501278	77501279	chr5:77501279:T:C	rs6883348	T	C	C	Sox1_MA0870.1	1	1	-	6.118232365759129	2.019941710365988	TACACTAGCAGTGAG
chr5	77709658	77709659	chr5:77709659:T:G	rs982063	T	G	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	77785842	77785843	chr5:77785843:C:T	rs11746827	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr5	77785854	77785855	chr5:77785855:C:T	rs254400	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	77809931	77809932	chr5:77809932:G:A	rs173281	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr5	78005310	78005311	chr5:78005311:C:T	rs12654154	C	T	C	Sox1_MA0870.1	8	1	+	4.261928002955782	0.08031845631849988	CACAAAAGCACTGTT
chr5	78288326	78288327	chr5:78288327:A:C	rs12186414	A	C	C	Sox1_MA0870.1	11	1	-	8.81623818135759	1.913505494500757	AACAATTATAGTGTC
chr5	78288327	78288328	chr5:78288328:C:T	rs6880507	C	T	T	Sox1_MA0870.1	10	1	-	8.81623818135759	4.248666025784818	AACAATTATAGTGTC
chr5	78295975	78295976	chr5:78295976:G:C	rs76901219	G	C	G	Sox1_MA0870.1	8	1	-	4.203741464606587	0.43323847170624885	CACAGTGACAGTGTG
chr5	78443329	78443330	chr5:78443330:T:C	rs1019803	T	C	C	Sox1_MA0870.1	29	0	-	0	0	.
chr5	78496011	78496012	chr5:78496012:T:C	rs144375037	T	C	T	Sox1_MA0870.1	3	1	-	4.031864427650921	-2.868725239546305	AACATTTGCATTGGA
chr5	78623919	78623920	chr5:78623920:T:C	rs112101376	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr5	78638568	78638569	chr5:78638569:C:T	rs541169012	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr5	78638577	78638578	chr5:78638578:G:A	rs76942426	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr5	78641141	78641142	chr5:78641142:C:T	rs168190	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr5	78782005	78782006	chr5:78782006:A:G	rs7721866	A	G	G	Sox1_MA0870.1	11	1	-	6.428565331054459	1.473170345244125	TCCAATAACAGTGAT
chr5	78903699	78903700	chr5:78903700:G:A	rs337863	G	A	G	Sox1_MA0870.1	12	1	+	9.880504113110494	2.9717493337952736	GACCATTTCATTGTT
chr5	79108310	79108311	chr5:79108311:C:T	rs16876500	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr5	79812652	79812653	chr5:79812653:T:C	rs13185886	T	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr5	79846367	79846368	chr5:79846368:T:G	rs10056632	T	G	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	80111806	80111807	chr5:80111807:T:C	rs113491810	T	C	T	Sox1_MA0870.1	9	1	-	6.833726137707668	-0.0750286416075513	GGCAAAACCATTGTT
chr5	80193027	80193028	chr5:80193028:A:C	rs145318546	A	C	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	80267108	80267109	chr5:80267109:G:C	rs28637244	G	C	g	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	80291293	80291294	chr5:80291294:A:G	rs28508166	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	80475093	80475094	chr5:80475094:G:A	rs183296707	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr5	80561517	80561518	chr5:80561518:T:G	rs249218	T	G	T	Sox1_MA0870.1	6	1	+	5.301346746247061	4.735788768820644	AGAAATTTCATTGTT
chr5	80615607	80615608	chr5:80615608:C:G	rs116207514	C	G	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	80655989	80655990	chr5:80655990:G:A	rs453544	G	A	A	Sox1_MA0870.1	15	0	+	0	0	.
chr5	80895594	80895595	chr5:80895595:G:T	rs10057510	G	T	G	Sox1_MA0870.1	8	1	-	6.268185766749421	0.37501611243120747	TACAATACCATTACT
chr5	81019208	81019209	chr5:81019209:T:G	rs150241884	T	G	T	Sox1_MA0870.1	1	1	+	5.903716073926288	5.0827096656942885	CTCAATAGCATTATT
chr5	81069067	81069068	chr5:81069068:T:C	rs26906	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr5	81113409	81113410	chr5:81113410:C:G	rs26422	C	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr5	81354366	81354367	chr5:81354367:T:C	rs6881812	T	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr5	81354377	81354378	chr5:81354378:G:A	rs6860593	G	A	G	Sox1_MA0870.1	8	1	-	4.4386828367991455	0.257073290161864	AACACTAACAGTACT
chr5	81427873	81427874	chr5:81427874:T:A	rs35657180	T	A	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr5	81970988	81970989	chr5:81970989:T:C	rs114210450	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr5	82421543	82421544	chr5:82421544:G:A	rs73766534	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	82551295	82551296	chr5:82551296:A:G	rs17309089	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr5	82564281	82564282	chr5:82564282:C:T	rs1847057	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr5	82622886	82622887	chr5:82622887:T:C	rs13178791	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	82719413	82719414	chr5:82719414:C:T	rs78071938	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr5	82738866	82738867	chr5:82738867:C:T	rs13176318	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr5	82814589	82814590	chr5:82814590:G:T	rs570152311	G	T	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	83142286	83142287	chr5:83142287:G:A	rs6868817	G	A	G	Sox1_MA0870.1	12	1	+	7.0428282216512255	0.13407344233600538	TACCATTTCAGTGTT
chr5	83267451	83267452	chr5:83267452:G:A	rs28360246	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	83554622	83554623	chr5:83554623:C:A	rs2290671	C	A	C	Sox1_MA0870.1	30	0	+	0	0	.
chr5	83572353	83572354	chr5:83572354:G:A	rs309585	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr5	83583915	83583916	chr5:83583916:T:A	rs180721333	T	A	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	83720228	83720229	chr5:83720229:A:G	rs2124884	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr5	83926623	83926624	chr5:83926624:G:A	rs75293683	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr5	83926624	83926625	chr5:83926625:T:G	rs141795028	T	G	T	Sox1_MA0870.1	19	0	+	0	0	.
chr5	83957310	83957311	chr5:83957311:C:T	rs78812825	C	T	C	Sox1_MA0870.1	2	1	+	6.168329986596674	-0.7404247927185472	GACAATTCCATTTTA
chr5	84238749	84238750	chr5:84238750:T:C	rs2121103	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr5	84636150	84636151	chr5:84636151:C:T	rs58203746	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr5	84719947	84719948	chr5:84719948:C:G	rs79058305	C	G	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr5	85030476	85030477	chr5:85030477:T:G	rs2136724	T	G	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	85714609	85714610	chr5:85714610:C:T	rs62363062	C	T	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	85938642	85938643	chr5:85938643:G:A	rs7702973	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr5	86210328	86210329	chr5:86210329:C:T	rs34441754	C	T	T	Sox1_MA0870.1	2	1	+	3.91811077961114	-2.9906439997040835	AACAATACCATCATC
chr5	86338300	86338301	chr5:86338301:C:T	rs68089139	C	T	T	Sox1_MA0870.1	8	1	+	6.163658635471153	1.9820490888338695	ACCACTTTCAGTGCT
chr5	86679919	86679920	chr5:86679920:A:G	rs113275192	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr5	87158903	87158904	chr5:87158904:G:A	rs12517726	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr5	87311815	87311816	chr5:87311816:G:A	rs10058449	G	A	G	Sox1_MA0870.1	0	1	+	5.221819891756724	6.563943034563476	GTAAATTACATTGTT
chr5	88467698	88467699	chr5:88467699:G:A	rs11952470	G	A	A	Sox1_MA0870.1	25	0	+	0	0	.
chr5	88550180	88550181	chr5:88550181:C:T	rs10491450	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	88848868	88848869	chr5:88848869:T:C	rs244751	T	C	T	Sox1_MA0870.1	1	1	-	5.396369102246654	1.298078446853514	CACAATAATATTATT
chr5	89339144	89339145	chr5:89339145:A:C	rs16867551	A	C	A	Sox1_MA0870.1	34	0	-	0	0	.
chr5	89339192	89339193	chr5:89339193:C:A	rs144535645	C	A	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	89722784	89722785	chr5:89722785:C:T	rs17512887	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr5	89729000	89729001	chr5:89729001:C:G	rs557860148	C	G	C	Sox1_MA0870.1	28	0	-	0	0	.
chr5	90168445	90168446	chr5:90168446:C:T	rs6859728	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr5	90169987	90169988	chr5:90169988:A:C	rs41410044	A	C	A	Sox1_MA0870.1	34	0	+	0	0	.
chr5	90170522	90170523	chr5:90170523:C:A	rs188803715	C	A	C	Sox1_MA0870.1	31	0	-	0	0	.
chr5	90326460	90326461	chr5:90326461:C:T	rs138603674	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr5	90439877	90439878	chr5:90439878:G:A	rs185513981	G	A	G	Sox1_MA0870.1	12	1	+	4.976883871442515	-1.9318709078727054	GGCAATAGCTTTGTT
chr5	90558494	90558495	chr5:90558495:C:G	rs154570	C	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr5	90558507	90558508	chr5:90558508:A:G	rs154569	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr5	91020672	91020673	chr5:91020673:T:C	rs116624629	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr5	91101911	91101912	chr5:91101912:A:G	rs6859589	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	91122853	91122854	chr5:91122854:T:G	rs13174460	T	G	T	Sox1_MA0870.1	34	0	-	0	0	.
chr5	91361525	91361526	chr5:91361526:T:G	rs147259291	T	G	T	Sox1_MA0870.1	9	1	-	5.931084390783796	-0.977670388531426	CACAATGAGATTGAA
chr5	91366915	91366916	chr5:91366916:C:T	rs62376561	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr5	91642290	91642291	chr5:91642291:A:G	rs148320994	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr5	91680251	91680252	chr5:91680252:T:C	rs2935250	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr5	91788061	91788062	chr5:91788062:T:C	rs4400158	T	C	C	Sox1_MA0870.1	4	1	-	4.119487612314298	-2.65809064185589	ACCAATTTCTTTGTC
chr5	92353396	92353397	chr5:92353397:G:A	rs115242525	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr5	93079209	93079210	chr5:93079210:C:T	rs995626	C	T	T	Sox1_MA0870.1	10	1	-	8.147603976358988	3.580031820786216	GACAAATACAGTGTT
chr5	93079221	93079222	chr5:93079222:A:G	chr5:93079222:A:G	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr5	93100629	93100630	chr5:93100630:G:A	rs76615913	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr5	93250239	93250240	chr5:93250240:A:G	rs115628076	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr5	93462110	93462111	chr5:93462111:A:C	rs115305675	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr5	94390330	94390331	chr5:94390331:T:C	rs29915	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	94527258	94527259	chr5:94527259:G:A	rs1839852	G	A	a	Sox1_MA0870.1	14	1	+	4.272835355909751	4.097504118842707	AACAATAGCAGTCCG
chr5	94661180	94661181	chr5:94661181:A:G	rs3947399	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	94691305	94691306	chr5:94691306:G:A	rs10078304	G	A	G	Sox1_MA0870.1	4	1	-	7.3004934033997575	2.4797280838547846	AACACAGGCATTGTC
chr5	94787402	94787403	chr5:94787403:C:T	rs185308	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr5	94918668	94918669	chr5:94918669:G:A	rs73776957	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr5	94918673	94918674	chr5:94918674:T:G	rs62365751	T	G	T	Sox1_MA0870.1	20	0	-	0	0	.
chr5	95080138	95080139	chr5:95080139:C:T	rs10060235	C	T	T	Sox1_MA0870.1	31	0	+	0	0	.
chr5	95486787	95486788	chr5:95486788:T:A	rs149966104	T	A	T	Sox1_MA0870.1	29	0	-	0	0	.
chr5	95554419	95554420	chr5:95554420:G:A	rs2731826	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr5	95732878	95732879	chr5:95732879:G:A	rs34894	G	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr5	96547971	96547972	chr5:96547972:G:A	rs112896983	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr5	96563416	96563417	chr5:96563417:T:C	rs2578697	T	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr5	96597877	96597878	chr5:96597878:C:T	rs55751508	C	T	.	Sox1_MA0870.1	21	0	+	0	0	.
chr5	96663457	96663458	chr5:96663458:C:T	rs190078201	C	T	C	Sox1_MA0870.1	10	1	-	3.481676823692615	-1.085895331880157	AACAATTCCAGTTCC
chr5	96663476	96663477	chr5:96663477:A:G	rs186303642	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr5	96663482	96663483	chr5:96663483:G:A	rs866651508	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	96806779	96806780	chr5:96806780:T:G	rs62376387	T	G	T	Sox1_MA0870.1	31	0	-	0	0	.
chr5	96895295	96895296	chr5:96895296:G:T	rs2549782	G	T	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr5	97010034	97010035	chr5:97010035:A:G	rs27711	A	G	G	Sox1_MA0870.1	27	0	-	0	0	.
chr5	97062074	97062075	chr5:97062075:C:T	rs80095180	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr5	97062078	97062079	chr5:97062079:G:A	rs74686141	G	A	g	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	97079397	97079398	chr5:97079398:C:T	rs316226	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr5	97140480	97140481	chr5:97140481:T:G	chr5:97140481:T:G	T	G	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr5	97528497	97528498	chr5:97528498:T:C	chr5:97528498:T:C	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr5	97908296	97908297	chr5:97908297:T:A	rs11742033	T	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr5	97921180	97921181	chr5:97921181:T:C	rs73156010	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr5	98483848	98483849	chr5:98483849:T:C	rs7712277	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr5	99178119	99178120	chr5:99178120:T:G	rs10056524	T	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	99219426	99219427	chr5:99219427:T:G	rs72777457	T	G	-	Sox1_MA0870.1	10	1	+	5.45206827554213	3.2109433469785684	AACAATAACATGGGG
chr5	99587037	99587038	chr5:99587038:G:A	rs2682159	G	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr5	99702684	99702685	chr5:99702685:G:T	rs12656620	G	T	G	Sox1_MA0870.1	22	0	-	0	0	.
chr5	99839705	99839706	chr5:99839706:T:C	rs10065685	T	C	C	Sox1_MA0870.1	26	0	-	0	0	.
chr5	99852051	99852052	chr5:99852052:C:A	rs61639350	C	A	-	Sox1_MA0870.1	-17	0	-	0	0	.
chr5	100693515	100693516	chr5:100693516:A:T	rs2590424	A	T	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	100780814	100780815	chr5:100780815:G:A	rs17778598	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	100837366	100837367	chr5:100837367:T:C	rs2548263	T	C	T	Sox1_MA0870.1	10	1	+	5.1624818410292495	-1.646215243107084	TGCAATTGCATTGGC
chr5	100940162	100940163	chr5:100940163:C:T	rs113831677	C	T	c	Sox1_MA0870.1	-8	0	-	0	0	.
chr5	101531350	101531351	chr5:101531351:G:A	rs350535	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	101754089	101754090	chr5:101754090:A:C	rs4703177	A	C	C	Sox1_MA0870.1	11	1	-	5.528236896484109	-1.374495790372724	GACAATGAGATTGGA
chr5	101754090	101754091	chr5:101754091:A:C	rs4703178	A	C	C	Sox1_MA0870.1	10	1	-	5.528236896484109	3.2871119679205476	GACAATGAGATTGGA
chr5	102346679	102346680	chr5:102346680:T:C	rs1584716	T	C	T	Sox1_MA0870.1	3	1	-	12.875581456124788	5.9749917889275626	CACAATTGCAGTGTT
chr5	102407998	102407999	chr5:102407999:T:C	rs1376899	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr5	102584150	102584151	chr5:102584151:T:C	rs72781841	T	C	T	Sox1_MA0870.1	9	1	-	7.957172061304481	1.04841728198926	ATCCATTCCATTGTT
chr5	102617411	102617412	chr5:102617412:C:T	rs10067699	C	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr5	102726160	102726161	chr5:102726161:T:C	rs79708835	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr5	102726205	102726206	chr5:102726206:A:G	rs58847509	A	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr5	102826880	102826881	chr5:102826881:A:G	chr5:102826881:A:G	A	G	A	Sox1_MA0870.1	10	1	-	5.126146765980196	-1.6825503181561379	AATAATATCATTGAA
chr5	102864444	102864445	chr5:102864445:A:G	rs7708778	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr5	103452674	103452675	chr5:103452675:C:T	rs1358453183	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	103457904	103457905	chr5:103457905:G:C	rs291836	G	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr5	103461289	103461290	chr5:103461290:T:A	rs294064	T	A	A	Sox1_MA0870.1	6	1	-	8.516284344857262	7.54323562914296	AACAATAGCATTTTA
chr5	103512841	103512842	chr5:103512842:C:G	rs294093	C	G	C	Sox1_MA0870.1	7	1	+	7.637208416866491	7.669990916606025	CACAATACCTTTGTC
chr5	103563122	103563123	chr5:103563123:T:C	rs368798432	T	C	T	Sox1_MA0870.1	3	1	-	6.2958610861049875	-0.6047285810922367	CTCAATTGCATTGGA
chr5	104327791	104327792	chr5:104327792:C:G	rs142236689	C	G	C	Sox1_MA0870.1	7	1	+	7.364987681882614	7.397770181622147	AACATTTCCATTGCT
chr5	104327818	104327819	chr5:104327819:A:G	rs349599	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr5	104432301	104432302	chr5:104432302:C:G	rs73192930	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr5	104540491	104540492	chr5:104540492:G:A	rs1363096	G	A	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr5	104612266	104612267	chr5:104612267:T:C	rs2431108	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr5	104766975	104766976	chr5:104766976:T:A	rs148839408	T	A	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	105632534	105632535	chr5:105632535:C:T	rs10070309	C	T	T	Sox1_MA0870.1	2	1	+	8.289717983621044	1.3809632043058242	TACAATAGCAGTGAC
chr5	105632548	105632549	chr5:105632549:T:C	rs10079505	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr5	105817329	105817330	chr5:105817330:T:C	rs75461962	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr5	106039444	106039445	chr5:106039445:G:A	rs35776914	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr5	106481692	106481693	chr5:106481693:G:A	rs191155580	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	106509411	106509412	chr5:106509412:G:A	rs10900889	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr5	106611141	106611142	chr5:106611142:A:T	rs62379351	A	T	A	Sox1_MA0870.1	34	0	-	0	0	.
chr5	106736979	106736980	chr5:106736980:G:A	rs293644	G	A	A	Sox1_MA0870.1	13	1	+	10.309980057216727	10.60700175726464	AACAATAAGATTGGT
chr5	106936429	106936430	chr5:106936430:C:T	rs543950592	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr5	107172756	107172757	chr5:107172757:G:C	rs12516271	G	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr5	107286913	107286914	chr5:107286914:G:A	rs13179809	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr5	107413342	107413343	chr5:107413343:C:A	rs66505151	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	107432401	107432402	chr5:107432402:A:C	rs154647	A	C	A	Sox1_MA0870.1	29	0	+	0	0	.
chr5	107557531	107557532	chr5:107557532:A:G	rs2161514	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	107557549	107557550	chr5:107557550:T:C	rs73198636	T	C	T	Sox1_MA0870.1	11	1	+	5.633121577661127	0.6777265918507934	AACAATGACATTTGT
chr5	107572733	107572734	chr5:107572734:C:T	rs624548	C	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr5	107724698	107724699	chr5:107724699:C:T	rs56159505	C	T	-	Sox1_MA0870.1	17	0	+	0	0	.
chr5	107772831	107772832	chr5:107772832:C:A	rs249980	C	A	C	Sox1_MA0870.1	30	0	-	0	0	.
chr5	107858244	107858245	chr5:107858245:A:G	rs6882819	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr5	107957329	107957330	chr5:107957330:T:C	rs12054721	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr5	108014661	108014662	chr5:108014662:C:G	rs2416523	C	G	C	Sox1_MA0870.1	21	0	+	0	0	.
chr5	108101323	108101324	chr5:108101324:C:A	rs10079990	C	A	C	Sox1_MA0870.1	7	1	-	10.701680830778736	10.65706927849083	AACCATGGCATTGTT
chr5	108167170	108167171	chr5:108167171:T:C	rs34423	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr5	108296022	108296023	chr5:108296023:T:C	rs73214575	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	108420452	108420453	chr5:108420453:C:G	rs17161316	C	G	c	Sox1_MA0870.1	-10	0	+	0	0	.
chr5	108508886	108508887	chr5:108508887:C:A	rs13188482	C	A	A	Sox1_MA0870.1	8	1	+	5.633121577661125	-0.26004807665708796	AATAATGACATTGGT
chr5	108859224	108859225	chr5:108859225:C:T	rs147399598	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr5	108863397	108863398	chr5:108863398:C:T	rs770511444	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	109191092	109191093	chr5:109191093:A:G	rs79861892	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr5	109327934	109327935	chr5:109327935:G:A	rs10463600	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr5	109368257	109368258	chr5:109368258:A:G	rs3805438	A	G	A	Sox1_MA0870.1	0	1	+	7.6673532022057245	6.3252300593989705	AGCAATGACAGTGCT
chr5	109411919	109411920	chr5:109411920:G:C	rs143912313	G	C	G	Sox1_MA0870.1	7	1	-	5.452798499900242	5.485580999639774	CTCCATACCAGTGTT
chr5	109411936	109411937	chr5:109411937:G:A	rs1156326889	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	109668858	109668859	chr5:109668859:G:T	rs142109310	G	T	G	Sox1_MA0870.1	2	1	-	10.945452522583949	4.0366977432687285	AACATTAACATTGTT
chr5	109866121	109866122	chr5:109866122:C:T	rs3797672	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr5	109988138	109988139	chr5:109988139:C:T	rs283350	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr5	109988164	109988165	chr5:109988165:T:C	rs189003526	T	C	T	Sox1_MA0870.1	10	1	+	4.003835155728214	-2.8048619284081187	GGAAATTGCATTGTT
chr5	110402211	110402212	chr5:110402212:G:A	rs35059300	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr5	110518453	110518454	chr5:110518454:A:C	rs28464907	A	C	C	Sox1_MA0870.1	1	1	+	6.2876774591933335	2.5185370743488344	GACATTTTCATTGTA
chr5	110816091	110816092	chr5:110816092:G:C	rs13354207	G	C	C	Sox1_MA0870.1	34	0	-	0	0	.
chr5	111158073	111158074	chr5:111158074:A:C	rs464429	A	C	A	Sox1_MA0870.1	3	1	+	6.055052488125798	0.9692875630876228	CACAATTTGATTGAA
chr5	111263132	111263133	chr5:111263133:C:T	rs7725193	C	T	C	Sox1_MA0870.1	2	1	+	4.197356135604714	-2.711398643710507	AACACTTTCAATGAT
chr5	111426709	111426710	chr5:111426710:C:T	rs6865298	C	T	C	Sox1_MA0870.1	7	1	-	5.966826676809568	6.363805004606075	CACAATTGCTGTGTT
chr5	111511332	111511333	chr5:111511333:A:G	rs152877	A	G	A	Sox1_MA0870.1	3	1	+	7.468749970849759	0.5681603036525326	AACAATAACATTTAT
chr5	111511337	111511338	chr5:111511338:C:T	rs138664285	C	T	C	Sox1_MA0870.1	8	1	+	7.468749970849759	3.2871404242124753	AACAATAACATTTAT
chr5	111530464	111530465	chr5:111530465:G:A	rs145149457	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr5	111638850	111638851	chr5:111638851:A:G	rs2118697	A	G	A	Sox1_MA0870.1	10	1	-	7.1244678573242854	0.31577077318795144	AACCATATCATTGAG
chr5	111658207	111658208	chr5:111658208:T:C	rs1904154	T	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr5	111677997	111677998	chr5:111677998:G:T	rs10478063	G	T	G	Sox1_MA0870.1	29	0	+	0	0	.
chr5	111758896	111758897	chr5:111758897:G:A	rs32334	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr5	111916397	111916398	chr5:111916398:A:G	rs1493457	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr5	112173531	112173532	chr5:112173532:A:G	rs6594568	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr5	112173534	112173535	chr5:112173535:A:G	rs6594569	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	112175237	112175238	chr5:112175238:C:T	rs777238202	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr5	112386916	112386917	chr5:112386917:T:A	rs151206467	T	A	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr5	112386944	112386945	chr5:112386945:C:G	rs17134454	C	G	G	Sox1_MA0870.1	8	1	+	8.217345835580144	4.446842842679805	ACCACTGACAGTGTT
chr5	112576149	112576150	chr5:112576150:C:T	rs6594617	C	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr5	112584825	112584826	chr5:112584826:G:A	rs12518872	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	112584841	112584842	chr5:112584842:T:C	rs72795818	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	112779944	112779945	chr5:112779945:A:G	rs77939389	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	112831889	112831890	chr5:112831890:T:C	rs548710	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr5	112884915	112884916	chr5:112884916:A:T	rs818428	A	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr5	112910755	112910756	chr5:112910756:C:A	rs17135168	C	A	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	113064856	113064857	chr5:113064857:A:T	rs4235787	A	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	113098768	113098769	chr5:113098769:G:A	rs3890775	G	A	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	113372091	113372092	chr5:113372092:C:T	rs12516418	C	T	C	Sox1_MA0870.1	2	1	+	14.582710093237319	7.673955313922098	AACAATTTCATTGTG
chr5	113375788	113375789	chr5:113375789:C:T	rs6887914	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	113433843	113433844	chr5:113433844:T:C	rs41459745	T	C	T	Sox1_MA0870.1	11	1	+	6.055647038815394	1.1002520530050595	GACATTTGCATTGCT
chr5	113599188	113599189	chr5:113599189:C:A	rs12517582	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	113599228	113599229	chr5:113599229:G:T	rs7715601	G	T	G	Sox1_MA0870.1	29	0	+	0	0	.
chr5	113645830	113645831	chr5:113645831:C:A	rs12189067	C	A	C	Sox1_MA0870.1	22	0	+	0	0	.
chr5	113671651	113671652	chr5:113671652:C:G	rs2195371	C	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr5	113738852	113738853	chr5:113738853:C:T	rs73250331	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	113813913	113813914	chr5:113813914:C:T	rs12520281	C	T	C	Sox1_MA0870.1	2	1	+	7.266880716367677	0.3581259370524582	TCCAATTCCATTGAT
chr5	113874911	113874912	chr5:113874912:A:T	rs7713629	A	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	113971153	113971154	chr5:113971154:T:C	rs1482487	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr5	114047722	114047723	chr5:114047723:T:G	rs78537262	T	G	T	Sox1_MA0870.1	5	1	-	5.917067955973637	4.033033210636413	CACAAAAGCATTGGC
chr5	114467883	114467884	chr5:114467884:C:G	rs112772339	C	G	C	Sox1_MA0870.1	10	1	+	5.785638388500381	10.353210544073153	CACACTGGCACTGTT
chr5	114544392	114544393	chr5:114544393:T:C	rs72803620	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr5	114789902	114789903	chr5:114789903:G:A	rs112348381	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr5	114988283	114988284	chr5:114988284:C:T	rs7701456	C	T	C	Sox1_MA0870.1	2	1	+	4.611782748533194	-2.2969720307820265	GACAATATCAGTACT
chr5	115022172	115022173	chr5:115022173:A:C	rs4705698	A	C	C	Sox1_MA0870.1	27	0	+	0	0	.
chr5	115492053	115492054	chr5:115492054:T:C	rs10463671	T	C	T	Sox1_MA0870.1	9	1	-	14.96626903814867	8.057514258833448	GACAATTTCATTGTT
chr5	115501869	115501870	chr5:115501870:G:A	rs181598906	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr5	115559782	115559783	chr5:115559783:C:T	rs256972	C	T	T	Sox1_MA0870.1	4	1	+	5.535143346781815	0.7143780272368433	GACACTGTCATTCTT
chr5	115661792	115661793	chr5:115661793:G:A	rs73782741	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr5	116071609	116071610	chr5:116071610:T:C	rs1605733	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr5	116075322	116075323	chr5:116075323:G:C	rs7715980	G	C	G	Sox1_MA0870.1	2	1	-	5.616761653269734	-1.2919931260454875	CACAAGAACAGTGTG
chr5	116132998	116132999	chr5:116132999:T:G	rs192696731	T	G	T	Sox1_MA0870.1	14	1	+	5.276998222112365	3.551316134394261	AATACTTCCATTGCT
chr5	116514086	116514087	chr5:116514087:C:T	rs112557435	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr5	116611427	116611428	chr5:116611428:A:G	rs12521940	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr5	116774096	116774097	chr5:116774097:T:C	rs2913608	T	C	C	Sox1_MA0870.1	13	1	+	4.00270274914114	1.8250474516901467	CTCAATAGCTTTGTA
chr5	116829972	116829973	chr5:116829973:C:T	rs1428011	C	T	C	Sox1_MA0870.1	7	1	+	4.299984273343744	4.288155220795371	TACACAACCATTGCA
chr5	116860333	116860334	chr5:116860334:T:C	rs10043907	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr5	116946757	116946758	chr5:116946758:C:T	rs59419128	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr5	117110693	117110694	chr5:117110694:T:C	rs4537091	T	C	c	Sox1_MA0870.1	9	1	-	7.235583064539654	0.3268282852244334	AGCAAATGCATTGTT
chr5	117401997	117401998	chr5:117401998:C:T	rs2624475	C	T	C	Sox1_MA0870.1	14	1	+	3.025987369922258	4.536996774403662	GGCACTTGCAGTGCC
chr5	117473627	117473628	chr5:117473628:C:A	rs2162748	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr5	118102307	118102308	chr5:118102308:A:G	rs6859254	A	G	A	Sox1_MA0870.1	11	1	-	5.327919550774654	0.3725245649643194	TACAATTGCTTTGCT
chr5	118235203	118235204	chr5:118235204:C:T	rs11742447	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr5	118354125	118354126	chr5:118354126:A:T	rs72791670	A	T	A	Sox1_MA0870.1	23	0	+	0	0	.
chr5	118487039	118487040	chr5:118487040:C:T	rs114508570	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr5	118487043	118487044	chr5:118487044:C:G	rs13164352	C	G	C	Sox1_MA0870.1	26	0	+	0	0	.
chr5	118620219	118620220	chr5:118620220:A:G	rs4519946	A	G	G	Sox1_MA0870.1	31	0	-	0	0	.
chr5	119271646	119271647	chr5:119271647:A:G	rs7704111	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr5	119277175	119277176	chr5:119277176:G:C	rs73247101	G	C	G	Sox1_MA0870.1	2	1	-	4.372321114236495	-2.536433665078724	CACAGTTGCAGTGTG
chr5	119365479	119365480	chr5:119365480:A:T	rs10055743	A	T	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	119418194	119418195	chr5:119418195:A:G	rs465091	A	G	A	Sox1_MA0870.1	6	1	-	6.440300608136998	2.024150321018097	ACCACTTTCAGTGTA
chr5	119681212	119681213	chr5:119681213:T:C	rs874886	T	C	T	Sox1_MA0870.1	6	1	-	15.939317753862971	14.400711060722251	GACAATATCATTGTT
chr5	119975076	119975077	chr5:119975077:G:A	rs58296627	G	A	G	Sox1_MA0870.1	6	1	+	4.487375652655654	6.025982345796372	ATCAATGACCTTGTC
chr5	119987128	119987129	chr5:119987129:G:A	rs4540207	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	120043339	120043340	chr5:120043340:C:T	rs6887845	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	120053328	120053329	chr5:120053329:C:G	rs347550	C	G	C	Sox1_MA0870.1	22	0	+	0	0	.
chr5	120053335	120053336	chr5:120053336:C:G	rs347551	C	G	C	Sox1_MA0870.1	29	0	+	0	0	.
chr5	120122830	120122831	chr5:120122831:C:T	rs77558498	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr5	120139209	120139210	chr5:120139210:C:T	rs79866854	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr5	120139868	120139869	chr5:120139869:T:C	rs17146162	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr5	120227128	120227129	chr5:120227129:C:T	rs12719272	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr5	120452578	120452579	chr5:120452579:G:A	rs1432461	G	A	A	Sox1_MA0870.1	27	0	+	0	0	.
chr5	120456696	120456697	chr5:120456697:G:T	rs1503929	G	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	120765998	120765999	chr5:120765999:C:T	rs1584469	C	T	C	Sox1_MA0870.1	7	1	+	5.71604713274092	5.704218080192547	ATCCATTCCAGTGTT
chr5	120766011	120766012	chr5:120766012:G:A	rs11749221	G	A	A	Sox1_MA0870.1	20	0	+	0	0	.
chr5	120803302	120803303	chr5:120803303:T:A	rs193290396	T	A	T	Sox1_MA0870.1	9	1	-	9.399637401640202	2.490882622324981	AAGAATTTCATTGTT
chr5	120872469	120872470	chr5:120872470:C:T	rs9327170	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	120872496	120872497	chr5:120872497:A:G	rs6878559	A	G	G	Sox1_MA0870.1	9	1	+	4.199734247194748	-2.7090205321204732	CTCTCTGACATTGTT
chr5	121102649	121102650	chr5:121102650:T:G	rs6896517	T	G	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr5	121106891	121106892	chr5:121106892:G:A	rs73266561	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr5	122313139	122313140	chr5:122313140:G:C	rs73279370	G	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr5	122418086	122418087	chr5:122418087:C:T	rs304391	C	T	C	Sox1_MA0870.1	8	1	+	3.410610837873471	-0.7709987087638115	GCCAAGAGCATTGTA
chr5	122592115	122592116	chr5:122592116:T:G	rs77575759	T	G	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr5	122703468	122703469	chr5:122703469:T:C	rs7710460	T	C	T	Sox1_MA0870.1	5	1	+	5.040763989938333	-1.8624007687094264	GACACTAGCACTGCT
chr5	123045429	123045430	chr5:123045430:G:T	rs780635350	G	T	G	Sox1_MA0870.1	19	0	-	0	0	.
chr5	123125372	123125373	chr5:123125373:C:T	rs335157	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr5	123199837	123199838	chr5:123199838:G:A	rs804722	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr5	123216085	123216086	chr5:123216086:T:C	rs57091299	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr5	123244922	123244923	chr5:123244923:G:A	rs453473	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr5	123693252	123693253	chr5:123693253:G:A	rs35021830	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr5	123997861	123997862	chr5:123997862:A:G	rs17489713	A	G	A	Sox1_MA0870.1	9	1	+	5.230958038784401	-1.6777967405308205	AACAATACCATTAGC
chr5	123998111	123998112	chr5:123998112:G:A	rs330433	G	A	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	124104958	124104959	chr5:124104959:A:G	rs138072248	A	G	A	Sox1_MA0870.1	13	1	-	3.772742821381952	1.595087523930958	CCCAGTATCATTGTG
chr5	124154931	124154932	chr5:124154932:C:T	rs12108901	C	T	C	Sox1_MA0870.1	7	1	-	11.839422137527208	12.236400465323715	CTCAATTGCATTGTT
chr5	124154934	124154935	chr5:124154935:T:G	rs1457687	T	G	g	Sox1_MA0870.1	4	1	-	11.839422137527208	9.882609202901993	CTCAATTGCATTGTT
chr5	124353197	124353198	chr5:124353198:G:A	rs79782499	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr5	124661085	124661086	chr5:124661086:A:G	rs7726952	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	124661111	124661112	chr5:124661112:T:C	rs76843142	T	C	T	Sox1_MA0870.1	11	1	+	4.25851336052987	-0.6968816252804638	AACCCATCCATTGTT
chr5	124679017	124679018	chr5:124679018:G:A	rs12655557	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr5	124773948	124773949	chr5:124773949:C:T	rs75498208	C	T	C	Sox1_MA0870.1	12	1	-	6.368675160521422	-0.5400796187937994	TACATTAGCAGTGTT
chr5	124949595	124949596	chr5:124949596:A:G	rs2028855	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr5	125255338	125255339	chr5:125255339:C:G	rs12522773	C	G	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr5	125326160	125326161	chr5:125326161:A:G	rs146365504	A	G	A	Sox1_MA0870.1	9	1	+	4.543101970569639	-2.3656528087455824	AACAATTTCATTCAC
chr5	125511014	125511015	chr5:125511015:C:T	rs2061328	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	125583654	125583655	chr5:125583655:T:C	rs56697409	T	C	T	Sox1_MA0870.1	4	1	-	6.939875392523868	0.16229713835368054	CACAATAGCCGTGTT
chr5	125583659	125583660	chr5:125583660:A:G	rs57517773	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	125639688	125639689	chr5:125639689:C:T	rs73784795	C	T	c	Sox1_MA0870.1	4	1	+	5.732428890641561	0.9116635710965886	CACACTTCCAGTGGC
chr5	125971537	125971538	chr5:125971538:G:A	rs72795069	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr5	126002494	126002495	chr5:126002495:T:G	rs71586079	T	G	T	Sox1_MA0870.1	0	1	-	5.621733018880666	4.385435670325685	AACAAAGACATTGGA
chr5	126274511	126274512	chr5:126274512:A:C	rs74928035	A	C	A	Sox1_MA0870.1	18	0	+	0	0	.
chr5	126334343	126334344	chr5:126334344:A:G	rs17154410	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	126374216	126374217	chr5:126374217:T:C	rs10078989	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr5	126437922	126437923	chr5:126437923:A:G	rs183737645	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr5	126554866	126554867	chr5:126554867:C:T	rs12513847	C	T	t	Sox1_MA0870.1	31	0	-	0	0	.
chr5	126728492	126728493	chr5:126728493:T:C	rs2055869	T	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr5	126923485	126923486	chr5:126923486:G:C	rs6860726	G	C	G	Sox1_MA0870.1	13	1	-	3.3851565051881174	1.9202640760020389	GACCATGTCAGTGCC
chr5	126998199	126998200	chr5:126998200:A:C	rs61653213	A	C	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	127149192	127149193	chr5:127149193:C:T	rs248045	C	T	T	Sox1_MA0870.1	10	1	-	4.080323912903308	-0.4872482426694643	GACAATTACCGTGCT
chr5	127601531	127601532	chr5:127601532:C:T	rs114741290	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr5	127660144	127660145	chr5:127660145:A:G	rs248700	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	128085547	128085548	chr5:128085548:A:G	rs770750751	A	G	A	Sox1_MA0870.1	10	1	-	4.160306478068924	-2.648390606067409	AACAGTGACATTGAA
chr5	128225440	128225441	chr5:128225441:G:C	rs36712	G	C	G	Sox1_MA0870.1	17	0	-	0	0	.
chr5	128560025	128560026	chr5:128560026:T:C	rs73348080	T	C	T	Sox1_MA0870.1	10	1	+	4.4936189494799965	-2.315078134656336	GTCTATTGCATTGTG
chr5	128736478	128736479	chr5:128736479:C:T	rs247178	C	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr5	128871024	128871025	chr5:128871025:A:G	rs13356389	A	G	G	Sox1_MA0870.1	4	1	+	3.4578992114587956	-3.319679042711392	GAGAATGGCATTGCA
chr5	129878190	129878191	chr5:129878191:T:C	rs33914	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr5	130479273	130479274	chr5:130479274:G:A	chr5:130479274:G:A	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr5	131065432	131065433	chr5:131065433:C:T	rs72803718	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	131583451	131583452	chr5:131583452:G:C	chr5:131583452:G:C	G	C	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr5	131657430	131657431	chr5:131657431:A:G	rs31584	A	G	g	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	132019961	132019962	chr5:132019962:G:A	rs1017884808	G	A	G	Sox1_MA0870.1	4	1	-	5.648819608779318	0.8280542892343467	TACACTTGCAATGTT
chr5	132137227	132137228	chr5:132137228:G:A	rs1416078064	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr5	132387133	132387134	chr5:132387134:A:G	rs77300588	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	132663267	132663268	chr5:132663268:C:T	chr5:132663268:C:T	C	T	C	Sox1_MA0870.1	7	1	-	3.9203479045036054	4.317326232300113	CACAGTTGCAGTGCT
chr5	132873617	132873618	chr5:132873618:A:G	rs7723970	A	G	A	Sox1_MA0870.1	6	1	-	8.881895492540776	4.465745205421875	AACTCTTGCATTGTT
chr5	132944973	132944974	chr5:132944974:C:A	rs13185394	C	A	N	Sox1_MA0870.1	2	1	+	4.919214783457822	-1.989539995857398	AACAAAAACAGTGGA
chr5	133055059	133055060	chr5:133055060:G:T	rs6874265	G	T	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr5	133397020	133397021	chr5:133397021:G:A	rs17166677	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr5	133423631	133423632	chr5:133423632:C:T	rs29545	C	T	T	Sox1_MA0870.1	24	0	-	0	0	.
chr5	133475636	133475637	chr5:133475637:C:G	rs165994	C	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr5	134032356	134032357	chr5:134032357:A:C	rs11956750	A	C	a	Sox1_MA0870.1	-17	0	-	0	0	.
chr5	134053986	134053987	chr5:134053987:A:G	rs2546347	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	134053989	134053990	chr5:134053990:C:T	rs2546348	C	T	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	134059368	134059369	chr5:134059369:C:T	rs192258821	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr5	134125999	134126000	chr5:134126000:A:G	rs3972624	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr5	134169183	134169184	chr5:134169184:T:C	rs2284312	T	C	T	Sox1_MA0870.1	4	1	-	4.661545322953025	-2.1160329312171635	ATCAAGTGCATTGTC
chr5	134175570	134175571	chr5:134175571:T:C	rs73791516	T	C	T	Sox1_MA0870.1	4	1	-	6.172554727434429	-0.6050235267357588	ATCAACTGCATTGTT
chr5	134252850	134252851	chr5:134252851:C:T	rs10078473	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	134284512	134284513	chr5:134284513:T:C	rs326610	T	C	T	Sox1_MA0870.1	10	1	+	4.383432574214678	-2.4252645099216554	CACAGTGTCATTGAT
chr5	134482866	134482867	chr5:134482867:T:C	rs74759031	T	C	t	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	134509420	134509421	chr5:134509421:T:C	rs6877546	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr5	134777762	134777763	chr5:134777763:C:G	rs139332323	C	G	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr5	134916928	134916929	chr5:134916929:C:G	rs319592	C	G	C	Sox1_MA0870.1	4	1	+	5.943658946862541	1.122893627317569	CACACTAGGAGTGCT
chr5	135067538	135067539	chr5:135067539:T:C	rs7737968	T	C	C	Sox1_MA0870.1	11	1	+	8.410264972731639	3.454869986921305	ATCACTAACATTGCA
chr5	135404008	135404009	chr5:135404009:C:A	rs139392213	C	A	C	Sox1_MA0870.1	32	0	+	0	0	.
chr5	135474644	135474645	chr5:135474645:G:A	rs251557	G	A	A	Sox1_MA0870.1	23	0	-	0	0	.
chr5	135512793	135512794	chr5:135512794:T:C	rs185786819	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	135636474	135636475	chr5:135636475:G:A	rs112800818	G	A	G	Sox1_MA0870.1	8	1	-	5.076934119188741	0.8953245725514583	ACCACAAACATTGTA
chr5	135809726	135809727	chr5:135809727:C:T	rs62364726	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	135881170	135881171	chr5:135881171:T:C	rs417168	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr5	135881171	135881172	chr5:135881172:G:A	rs442281	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr5	136062589	136062590	chr5:136062590:G:A	rs3749782	G	A	G	Sox1_MA0870.1	13	1	-	3.8479031317625396	6.025558429213534	GACAATGGCTTTGCC
chr5	136235329	136235330	chr5:136235330:C:A	rs2194138	C	A	A	Sox1_MA0870.1	17	0	-	0	0	.
chr5	137088744	137088745	chr5:137088745:C:T	rs2881849	C	T	T	Sox1_MA0870.1	18	0	-	0	0	.
chr5	137111884	137111885	chr5:137111885:A:C	rs1859346	A	C	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	137273912	137273913	chr5:137273913:T:C	rs17171273	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr5	137288092	137288093	chr5:137288093:T:C	rs2905558	T	C	T	Sox1_MA0870.1	4	1	-	5.411470053708577	-1.3661082004616123	GACCATAACAGTGGT
chr5	137288106	137288107	chr5:137288107:T:C	rs79147742	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	137372929	137372930	chr5:137372930:T:C	rs17171376	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr5	137395124	137395125	chr5:137395125:T:C	chr5:137395125:T:C	T	C	T	Sox1_MA0870.1	9	1	-	5.672398409047004	-1.2363563702682168	GACCATGTCATTGGT
chr5	137492722	137492723	chr5:137492723:A:G	rs114453870	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr5	137563655	137563656	chr5:137563656:C:G	rs35051685	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr5	138101535	138101536	chr5:138101536:A:G	rs4835767	A	G	A	Sox1_MA0870.1	14	1	-	8.909187051261029	7.398177646779624	AGCAATTGCATTGAT
chr5	138725982	138725983	chr5:138725983:T:C	rs78747212	T	C	T	Sox1_MA0870.1	10	1	+	3.8173543736698594	-2.991342710466474	CCCATTAGCATTGTG
chr5	138955443	138955444	chr5:138955444:G:A	rs564332339	G	A	G	Sox1_MA0870.1	7	1	-	4.177369272402218	4.1655402198538445	ATCACTTCCATTTTT
chr5	139049977	139049978	chr5:139049978:A:G	rs541418131	A	G	A	Sox1_MA0870.1	1	1	+	6.370712638041305	2.2724219826481633	AACTCTGTCATTGTA
chr5	139475514	139475515	chr5:139475515:C:T	rs186158920	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	139475516	139475517	chr5:139475517:A:G	rs372676180	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	139747006	139747007	chr5:139747007:C:T	rs1000763926	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr5	139780269	139780270	chr5:139780270:G:A	rs72794884	G	A	G	Sox1_MA0870.1	4	1	-	6.799243019080465	1.9784776995354942	AACCCTGTCATTGTA
chr5	140073307	140073308	chr5:140073308:G:A	rs187178000	G	A	G	Sox1_MA0870.1	8	1	-	7.516812627716947	3.3352030810796647	ATCTATTTCATTGTT
chr5	140296594	140296595	chr5:140296595:C:T	rs7734018	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr5	140718797	140718798	chr5:140718798:G:T	rs73273339	G	T	G	Sox1_MA0870.1	2	1	-	7.09823934418753	0.18948456487230825	GACAATTGGAGTGTA
chr5	141477654	141477655	chr5:141477655:T:C	rs138608867	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr5	141696404	141696405	chr5:141696405:A:T	rs74957209	A	T	T	Sox1_MA0870.1	28	0	+	0	0	.
chr5	141701933	141701934	chr5:141701934:C:T	rs78010744	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr5	141834687	141834688	chr5:141834688:G:A	rs114194	G	A	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	141956698	141956699	chr5:141956699:G:T	rs164075	G	T	T	Sox1_MA0870.1	14	1	+	4.12056978034453	5.846251868062634	GACCAAACCATTGTG
chr5	142175949	142175950	chr5:142175950:A:G	rs9324871	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr5	142278084	142278085	chr5:142278085:G:A	rs10066930	G	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr5	142407139	142407140	chr5:142407140:A:T	rs2446051	A	T	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	142500297	142500298	chr5:142500298:A:G	rs249729	A	G	A	Sox1_MA0870.1	10	1	-	9.457258800664151	2.648561716527818	AGCAATAGGATTGTT
chr5	142568256	142568257	chr5:142568257:T:C	rs33984	T	C	C	Sox1_MA0870.1	9	1	-	5.8335221333771266	-1.0752326459380939	AACACTAGAATTGGT
chr5	142693239	142693240	chr5:142693240:C:T	rs11949820	C	T	c	Sox1_MA0870.1	-13	0	+	0	0	.
chr5	142837919	142837920	chr5:142837920:G:A	rs10045187	G	A	A	Sox1_MA0870.1	32	0	-	0	0	.
chr5	142888685	142888686	chr5:142888686:T:C	rs774958166	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr5	143004691	143004692	chr5:143004692:C:G	rs75903547	C	G	C	Sox1_MA0870.1	27	0	-	0	0	.
chr5	143019291	143019292	chr5:143019292:A:C	rs3776362	A	C	A	Sox1_MA0870.1	3	1	+	5.426308598439304	0.34054367340112845	GTCACTGCCAGTGTC
chr5	143217378	143217379	chr5:143217379:T:G	rs148105567	T	G	T	Sox1_MA0870.1	32	0	+	0	0	.
chr5	143248646	143248647	chr5:143248647:C:T	rs139068600	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr5	143471597	143471598	chr5:143471598:T:C	rs139538225	T	C	C	Sox1_MA0870.1	29	0	-	0	0	.
chr5	143471598	143471599	chr5:143471599:A:G	rs141591619	A	G	G	Sox1_MA0870.1	28	0	-	0	0	.
chr5	143534113	143534114	chr5:143534114:C:T	rs6895860	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr5	143657294	143657295	chr5:143657295:A:C	rs1427864	A	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	143757247	143757248	chr5:143757248:T:C	rs114604128	T	C	T	Sox1_MA0870.1	3	1	-	5.007677561881094	-1.8929121053161304	AACAGTATGATTGTG
chr5	143965094	143965095	chr5:143965095:G:A	rs312571	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr5	144134454	144134455	chr5:144134455:A:T	rs145918900	A	T	A	Sox1_MA0870.1	3	1	+	10.548474194787442	5.034178888710105	AACAGTAGCATTGTT
chr5	144208288	144208289	chr5:144208289:G:A	rs146717397	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr5	144293718	144293719	chr5:144293719:A:G	rs10515537	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr5	144773346	144773347	chr5:144773347:T:C	rs247563	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr5	144971737	144971738	chr5:144971738:A:C	rs31901	A	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr5	145110847	145110848	chr5:145110848:A:G	rs13178930	A	G	A	Sox1_MA0870.1	11	1	-	4.423034772588629	-0.5323602132217049	CACAATTCCAGTCTC
chr5	145239374	145239375	chr5:145239375:T:C	rs17096539	T	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr5	146028524	146028525	chr5:146028525:C:T	rs13181933	C	T	T	Sox1_MA0870.1	16	0	+	0	0	.
chr5	146126536	146126537	chr5:146126537:G:A	rs11540216	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr5	146188800	146188801	chr5:146188801:T:A	rs17104298	T	A	T	Sox1_MA0870.1	18	0	-	0	0	.
chr5	146542706	146542707	chr5:146542707:T:C	rs75656298	T	C	T	Sox1_MA0870.1	13	1	+	5.584392465711959	3.406737168260964	ATAAATATCATTGTC
chr5	146759196	146759197	chr5:146759197:T:C	rs575975422	T	C	T	Sox1_MA0870.1	13	1	+	4.801743666070392	2.624088368619398	TGCTATTGCATTGTT
chr5	146833349	146833350	chr5:146833350:T:A	rs249900	T	A	T	Sox1_MA0870.1	6	1	+	7.888627997158798	8.861676712873098	AATAATTTCATTGTC
chr5	146834311	146834312	chr5:146834312:T:C	chr5:146834312:T:C	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	146834315	146834316	chr5:146834316:T:C	chr5:146834316:T:C	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr5	147395911	147395912	chr5:147395912:T:G	rs2288806	T	G	G	Sox1_MA0870.1	5	1	-	4.064128496242143	2.180093750904916	ACCACATCCATTGTC
chr5	147551769	147551770	chr5:147551770:C:A	rs72833398	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr5	147780867	147780868	chr5:147780868:G:A	rs12655202	G	A	G	Sox1_MA0870.1	2	1	-	15.770431492188319	8.861676712873098	AACAATATCATTGTC
chr5	147857650	147857651	chr5:147857651:T:C	rs150243556	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr5	147909587	147909588	chr5:147909588:G:A	rs60307992	G	A	C	Sox1_MA0870.1	29	0	-	0	0	.
chr5	148098625	148098626	chr5:148098626:T:G	rs12657460	T	G	T	Sox1_MA0870.1	25	0	+	0	0	.
chr5	148696379	148696380	chr5:148696380:G:T	rs73795119	G	T	G	Sox1_MA0870.1	24	0	-	0	0	.
chr5	148731112	148731113	chr5:148731113:T:C	rs367936739	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr5	148731142	148731143	chr5:148731143:T:G	rs138468658	T	G	T	Sox1_MA0870.1	11	1	+	9.29701264926004	2.394279962403208	TACTATTACATTGTT
chr5	148881659	148881660	chr5:148881660:T:A	rs990506	T	A	A	Sox1_MA0870.1	21	0	-	0	0	.
chr5	148887802	148887803	chr5:148887803:G:A	rs72829178	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr5	148955679	148955680	chr5:148955680:T:C	rs4705298	T	C	T	Sox1_MA0870.1	7	1	-	7.023467181251647	6.626488853455138	ATCAATGACAGTGGT
chr5	149067192	149067193	chr5:149067193:A:G	rs168750	A	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr5	149073162	149073163	chr5:149073163:T:C	rs417413	T	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr5	149203069	149203070	chr5:149203070:A:C	rs6880899	A	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	149373037	149373038	chr5:149373038:G:A	rs432132	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr5	149373041	149373042	chr5:149373042:T:C	rs374806	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr5	149419936	149419937	chr5:149419937:T:C	rs34670039	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr5	149576263	149576264	chr5:149576264:A:C	rs74294135	A	C	A	Sox1_MA0870.1	10	1	-	7.460963295937741	5.21983836737418	TACAATTTCTTTGTT
chr5	149611300	149611301	chr5:149611301:A:T	rs376379550	A	T	A	Sox1_MA0870.1	9	1	+	4.830646714489689	-2.078108064825531	AATAATAGCAGTGAT
chr5	149611306	149611307	chr5:149611307:G:T	rs6873616	G	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr5	149673213	149673214	chr5:149673214:G:A	rs115727681	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr5	149872021	149872022	chr5:149872022:T:C	rs9885044	T	C	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr5	149941579	149941580	chr5:149941580:G:A	rs1368427	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr5	149941582	149941583	chr5:149941583:T:C	rs1368428	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr5	149960131	149960132	chr5:149960132:T:C	rs75063351	T	C	T	Sox1_MA0870.1	12	1	+	6.001539851237008	6.001539851237008	TACAATTACATTTTA
chr5	149960147	149960148	chr5:149960148:G:T	rs77024356	G	T	T	Sox1_MA0870.1	28	0	+	0	0	.
chr5	150024615	150024616	chr5:150024616:G:T	rs35341726	G	T	G	Sox1_MA0870.1	24	0	+	0	0	.
chr5	150043865	150043866	chr5:150043866:A:G	rs371713011	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr5	150395870	150395871	chr5:150395871:C:T	rs55752439	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr5	150407437	150407438	chr5:150407438:C:T	chr5:150407438:C:T	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr5	150567258	150567259	chr5:150567259:A:G	rs253290	A	G	G	Sox1_MA0870.1	11	1	-	6.200997598128892	1.2456026123185577	TACACAACCATTGCT
chr5	150610488	150610489	chr5:150610489:C:T	rs957243781	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr5	150789958	150789959	chr5:150789959:T:A	rs10077008	T	A	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	151214633	151214634	chr5:151214634:T:C	rs12521757	T	C	C	Sox1_MA0870.1	4	1	-	4.851596616796255	-1.925981637373934	TACAATCACATTGGA
chr5	151283921	151283922	chr5:151283922:C:T	rs114946340	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	151283999	151284000	chr5:151284000:T:A	rs10043175	T	A	A	Sox1_MA0870.1	5	1	+	5.790508646288643	0.771378632978108	AACAGTTCCAGTGTC
chr5	151284003	151284004	chr5:151284004:A:C	rs1347147	A	C	C	Sox1_MA0870.1	9	1	+	5.790508646288643	-1.1182461330265785	AACAGTTCCAGTGTC
chr5	151452427	151452428	chr5:151452428:A:G	rs918421	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr5	151523598	151523599	chr5:151523599:G:A	rs376564132	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	151566369	151566370	chr5:151566370:C:T	rs3734058	C	T	C	Sox1_MA0870.1	3	1	+	7.201075991932582	6.772545610893422	AACCCTGCCATTGTC
chr5	151611109	151611110	chr5:151611110:G:A	rs79877348	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	152039087	152039088	chr5:152039088:C:T	rs774720498	C	T	C	Sox1_MA0870.1	12	1	-	4.2962064802445505	-2.6125482990706703	TACACTCACAGTGTA
chr5	152097028	152097029	chr5:152097029:G:A	rs497988	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr5	152405354	152405355	chr5:152405355:A:G	rs114523919	A	G	A	Sox1_MA0870.1	10	1	-	3.5455744795378457	-3.2631226045984874	CACACTCTCATTGGC
chr5	152500350	152500351	chr5:152500351:A:G	rs17451303	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	152500398	152500399	chr5:152500399:T:C	rs17113291	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr5	153628477	153628478	chr5:153628478:C:T	rs74680387	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr5	153641032	153641033	chr5:153641033:A:C	rs1422893	A	C	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr5	153768287	153768288	chr5:153768288:C:T	rs4576205	C	T	T	Sox1_MA0870.1	25	0	+	0	0	.
chr5	153780865	153780866	chr5:153780866:G:A	rs56968997	G	A	G	Sox1_MA0870.1	8	1	+	10.329656673137562	8.206990011719686	CACACTACGATTGTT
chr5	153901246	153901247	chr5:153901247:G:A	rs76624928	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	154039781	154039782	chr5:154039782:C:T	rs2560062	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	154147317	154147318	chr5:154147318:G:T	rs815615	G	T	T	Sox1_MA0870.1	17	0	-	0	0	.
chr5	154218363	154218364	chr5:154218364:G:A	rs4958715	G	A	A	Sox1_MA0870.1	12	1	+	6.561103921858622	-0.3476508574565993	ATCAATAGCAGTGAA
chr5	154243207	154243208	chr5:154243208:T:G	rs2122895	T	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr5	154255371	154255372	chr5:154255372:G:A	rs2034580	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr5	154279051	154279052	chr5:154279052:T:C	rs72808634	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr5	154465432	154465433	chr5:154465433:C:T	rs17116175	C	T	C	Sox1_MA0870.1	0	1	+	5.088299686361749	4.385922929214268	CGCAAGAGCATTGTT
chr5	154644995	154644996	chr5:154644996:C:T	rs68119351	C	T	C	Sox1_MA0870.1	7	1	-	4.209849901959053	4.6068282297555605	CACAATAGCACTGAG
chr5	154829463	154829464	chr5:154829464:A:G	rs702742	A	G	G	Sox1_MA0870.1	13	1	-	3.406791161447977	1.2291358639969827	ACCAAGTCCAGTGTT
chr5	155481239	155481240	chr5:155481240:G:A	rs28403074	G	A	G	Sox1_MA0870.1	8	1	-	5.269328200839866	1.0877186542025847	AACAATTCCAGTATA
chr5	155665802	155665803	chr5:155665803:A:G	rs17118190	A	G	G	Sox1_MA0870.1	0	1	-	8.090035830905203	8.792412588052683	TCCACTGCCATTGTT
chr5	156133208	156133209	chr5:156133209:T:C	rs4704977	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr5	156302879	156302880	chr5:156302880:C:T	rs1580927	C	T	c	Sox1_MA0870.1	25	0	-	0	0	.
chr5	156328243	156328244	chr5:156328244:G:A	rs74755325	G	A	G	Sox1_MA0870.1	6	1	+	9.725491475590403	11.26409816873112	TACAATGTCATTGCA
chr5	156531452	156531453	chr5:156531453:G:A	rs148926503	G	A	G	Sox1_MA0870.1	33	0	-	0	0	.
chr5	156590074	156590075	chr5:156590075:A:G	rs3797574	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	156590078	156590079	chr5:156590079:A:G	rs157292	A	G	G	Sox1_MA0870.1	0	1	+	5.601406729340551	4.259283586533798	ATGAATGGCATTGTT
chr5	156735640	156735641	chr5:156735641:G:A	rs76691977	G	A	g	Sox1_MA0870.1	24	0	-	0	0	.
chr5	156735647	156735648	chr5:156735648:T:C	rs116543869	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr5	156801147	156801148	chr5:156801148:A:C	rs1029481076	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr5	157116102	157116103	chr5:157116103:T:G	rs4704854	T	G	G	Sox1_MA0870.1	1	1	-	3.305847470766628	-0.4632929140778709	GACACTGCCAGTATT
chr5	157144161	157144162	chr5:157144162:A:G	rs246857	A	G	A	Sox1_MA0870.1	5	1	-	3.288809638193964	-3.614355120453795	GACCATAGCAGTGGG
chr5	157158242	157158243	chr5:157158243:T:C	rs246871	T	C	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr5	157216388	157216389	chr5:157216389:A:G	rs152113	A	G	A	Sox1_MA0870.1	10	1	-	3.9072684906410506	-2.9014285934952837	CACAACACCATTGAA
chr5	157363428	157363429	chr5:157363429:A:G	rs73815868	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr5	157475706	157475707	chr5:157475707:C:T	rs75019310	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr5	157524113	157524114	chr5:157524114:G:C	rs34603646	G	C	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr5	157567022	157567023	chr5:157567023:C:T	rs11465254	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr5	157691229	157691230	chr5:157691230:T:C	rs73815357	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr5	157691272	157691273	chr5:157691273:T:C	rs73815359	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr5	157761998	157761999	chr5:157761999:A:G	rs1474912264	A	G	A	Sox1_MA0870.1	4	1	-	4.281595368122222	9.102360687667193	TACATTTACAGTGTC
chr5	157780493	157780494	chr5:157780494:T:C	rs254680	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr5	157821539	157821540	chr5:157821540:T:A	rs17680818	T	A	T	Sox1_MA0870.1	4	1	-	6.12306061925541	-0.6545176349147758	GACTATTAGATTGTT
chr5	157888399	157888400	chr5:157888400:G:A	rs150335442	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr5	157915755	157915756	chr5:157915756:T:C	rs899541	T	C	C	Sox1_MA0870.1	0	1	-	6.4521296606853715	5.110006517878618	ACCACTTCCAGTGTA
chr5	158000740	158000741	chr5:158000741:T:C	rs7728299	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr5	158215927	158215928	chr5:158215928:A:G	rs115783907	A	G	A	Sox1_MA0870.1	5	1	-	12.337620767357684	5.434456008709924	CACAATAGCAGTGTC
chr5	158449465	158449466	chr5:158449466:T:G	rs11959225	T	G	G	Sox1_MA0870.1	22	0	-	0	0	.
chr5	158820529	158820530	chr5:158820530:G:A	rs146680595	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr5	159061697	159061698	chr5:159061698:C:T	chr5:159061698:C:T	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr5	159286663	159286664	chr5:159286664:G:A	rs111764671	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr5	159325261	159325262	chr5:159325262:C:T	rs3181217	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr5	159412208	159412209	chr5:159412209:C:T	rs1422878	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr5	159517076	159517077	chr5:159517077:A:G	rs11959014	A	G	A	Sox1_MA0870.1	9	1	+	14.255208437647518	7.3464536583322975	AACACTAACATTGTC
chr5	159816809	159816810	chr5:159816810:A:T	rs17057157	A	T	A	Sox1_MA0870.1	11	1	-	5.326130036504412	-1.5766026503524198	GACAATGCCATTTCT
chr5	160073734	160073735	chr5:160073735:G:C	rs563719179	G	C	G	Sox1_MA0870.1	25	0	-	0	0	.
chr5	160199014	160199015	chr5:160199015:C:T	rs116602704	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	160240605	160240606	chr5:160240606:C:T	rs3926393	C	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	160309021	160309022	chr5:160309022:G:A	rs79101558	G	A	g	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	160309036	160309037	chr5:160309037:A:G	rs12659739	A	G	g	Sox1_MA0870.1	-16	0	-	0	0	.
chr5	160333980	160333981	chr5:160333981:A:C	rs141896007	A	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr5	160358008	160358009	chr5:160358009:T:C	rs80247458	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr5	160398895	160398896	chr5:160398896:G:T	rs141941019	G	T	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	160484216	160484217	chr5:160484217:A:G	rs2910163	A	G	A	Sox1_MA0870.1	6	1	+	6.955497422994178	5.41689072985346	AACACTAGCATGGTC
chr5	160852272	160852273	chr5:160852273:C:T	rs6868857	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	160852274	160852275	chr5:160852275:A:G	rs6889594	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr5	160900991	160900992	chr5:160900992:G:A	rs1516652	G	A	g	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	161167752	161167753	chr5:161167753:G:A	rs164042	G	A	A	Sox1_MA0870.1	13	1	-	4.789958862007548	6.9676141594585435	TACAATAGCATTTCC
chr5	161307632	161307633	chr5:161307633:G:T	rs194073	G	T	T	Sox1_MA0870.1	7	1	-	4.437719487607382	4.867480315143424	ACAAATACCATTGCT
chr5	161407210	161407211	chr5:161407211:G:A	rs1422950	G	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr5	161407253	161407254	chr5:161407254:G:A	rs1422951	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr5	161483652	161483653	chr5:161483653:T:C	rs2964772	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr5	161483690	161483691	chr5:161483691:G:A	rs74707285	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr5	162096716	162096717	chr5:162096717:A:G	rs2910223	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr5	162818069	162818070	chr5:162818070:A:G	rs17060894	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr5	163269583	163269584	chr5:163269584:C:T	rs300193	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr5	163284224	163284225	chr5:163284225:T:C	rs933640	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr5	163489737	163489738	chr5:163489738:T:C	rs72808226	T	C	T	Sox1_MA0870.1	5	1	+	4.565403878736055	-2.3377608799117042	CACAATTGCATTTGT
chr5	163861943	163861944	chr5:163861944:A:T	rs138742827	A	T	A	Sox1_MA0870.1	14	1	+	7.118472455279609	9.019485780064757	GTCAATATCATTGGA
chr5	163913871	163913872	chr5:163913872:T:C	rs17062504	T	C	T	Sox1_MA0870.1	10	1	+	5.790312668510574	-1.0183844156257589	AACAAATGCATTGGA
chr5	164070299	164070300	chr5:164070300:G:A	rs978114	G	A	A	Sox1_MA0870.1	12	1	+	5.699089028375908	-1.2096657509393123	AACAATTACTGTGTA
chr5	164615273	164615274	chr5:164615274:T:C	rs1366190	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr5	165360856	165360857	chr5:165360857:G:A	rs55641890	G	A	G	Sox1_MA0870.1	11	1	-	7.950873601687488	12.90626858749782	CACAATTCCATCGCT
chr5	165466739	165466740	chr5:165466740:T:C	rs3899980	T	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr5	165808377	165808378	chr5:165808378:G:A	chr5:165808378:G:A	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr5	165996948	165996949	chr5:165996949:C:T	rs62383292	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	166002823	166002824	chr5:166002824:A:G	rs6868659	A	G	G	Sox1_MA0870.1	13	1	-	10.838708427165994	8.661053129714999	AACTATTGCATTGTT
chr5	166363732	166363733	chr5:166363733:C:T	rs2047586	C	T	T	Sox1_MA0870.1	22	0	-	0	0	.
chr5	166371315	166371316	chr5:166371316:G:A	rs17066756	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	166897045	166897046	chr5:166897046:G:A	rs562330152	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr5	167639731	167639732	chr5:167639732:T:A	rs76536823	T	A	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr5	167711054	167711055	chr5:167711055:G:A	rs7732135	G	A	G	Sox1_MA0870.1	13	1	-	3.481676823692615	5.65933212114361	AACAATTCCAGTACC
chr5	167861678	167861679	chr5:167861679:G:A	rs1363206	G	A	G	Sox1_MA0870.1	8	1	-	5.661428247458595	1.479818700821312	TAAAATTACAGTGTT
chr5	167889370	167889371	chr5:167889371:G:A	rs78787245	G	A	G	Sox1_MA0870.1	11	1	-	5.902786274870392	10.858181260680727	ACCAATTGCATCGTG
chr5	167910087	167910088	chr5:167910088:A:G	rs1433682402	A	G	a	Sox1_MA0870.1	27	0	-	0	0	.
chr5	167946126	167946127	chr5:167946127:A:T	rs1050878876	A	T	A	Sox1_MA0870.1	21	0	-	0	0	.
chr5	168147616	168147617	chr5:168147617:G:C	rs10077866	G	C	G	Sox1_MA0870.1	0	1	+	8.136594160426489	8.242419954678262	GGCAATGCCATTGCT
chr5	168291054	168291055	chr5:168291055:T:A	rs72838318	T	A	T	Sox1_MA0870.1	5	1	+	6.701035679050698	1.6819056657401634	AACAATGGCATTACT
chr5	168459825	168459826	chr5:168459826:C:G	rs2337212	C	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr5	168459839	168459840	chr5:168459840:T:C	rs642448	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr5	168797062	168797063	chr5:168797063:C:T	rs143652220	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr5	168848605	168848606	chr5:168848606:G:A	rs114372095	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	169088447	169088448	chr5:169088448:A:G	rs2221839	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr5	169089546	169089547	chr5:169089547:A:G	rs7724307	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr5	169779307	169779308	chr5:169779308:A:C	rs6879663	A	C	A	Sox1_MA0870.1	14	1	-	8.69650167176067	6.970819584042567	CACACTTTCAGTGCT
chr5	170058810	170058811	chr5:170058811:G:A	rs7727916	G	A	g	Sox1_MA0870.1	18	0	+	0	0	.
chr5	170317772	170317773	chr5:170317773:A:G	rs57306647	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr5	170442736	170442737	chr5:170442737:C:T	rs1973527	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr5	170555031	170555032	chr5:170555032:A:G	rs9313511	A	G	G	Sox1_MA0870.1	11	1	-	4.080323912903307	-0.8750710729070269	GATAATTACAGTGCT
chr5	170654707	170654708	chr5:170654708:A:G	rs17650276	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr5	171386793	171386794	chr5:171386794:T:G	rs77271960	T	G	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	171495525	171495526	chr5:171495526:G:T	rs1349494697	G	T	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr5	171710732	171710733	chr5:171710733:G:A	rs1897549	G	A	G	Sox1_MA0870.1	8	1	-	6.980233629106804	2.798624082469522	AACCATGCCATTGCC
chr5	171847220	171847221	chr5:171847221:T:C	rs702097	T	C	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr5	172332145	172332146	chr5:172332146:G:C	rs12656204	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	172338074	172338075	chr5:172338075:G:T	rs76956436	G	T	G	Sox1_MA0870.1	17	0	-	0	0	.
chr5	172358287	172358288	chr5:172358288:A:G	rs17702964	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr5	172476305	172476306	chr5:172476306:T:C	rs10042482	T	C	A	Sox1_MA0870.1	5	1	+	5.206627820447442	-1.6965369382003184	CACACTGACAGTGGA
chr5	172559310	172559311	chr5:172559311:C:T	rs142962816	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr5	172677624	172677625	chr5:172677625:T:C	rs4867685	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr5	173165195	173165196	chr5:173165196:A:G	rs28200	A	G	G	Sox1_MA0870.1	11	1	-	3.4578992114587956	-1.4974957743515387	GAGAATGGCATTGCA
chr5	173248030	173248031	chr5:173248031:A:G	rs62378332	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr5	173409272	173409273	chr5:173409273:A:G	rs35470281	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr5	173481239	173481240	chr5:173481240:T:C	rs873725	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	173557645	173557646	chr5:173557646:G:C	rs112708239	G	C	G	Sox1_MA0870.1	13	1	-	3.8647747893602715	2.399882360174193	AACTCTGCCAGTGCT
chr5	173572523	173572524	chr5:173572524:T:C	rs7703857	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr5	173775452	173775453	chr5:173775453:A:G	rs73804584	A	G	A	Sox1_MA0870.1	6	1	+	5.262260407954759	3.723653714814041	CACCCTACCAGTGTC
chr5	173775468	173775469	chr5:173775469:T:A	rs979021742	T	A	T	Sox1_MA0870.1	22	0	+	0	0	.
chr5	173871458	173871459	chr5:173871459:G:T	rs359440	G	T	t	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	173877493	173877494	chr5:173877494:G:T	rs359474	G	T	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	174355327	174355328	chr5:174355328:T:C	rs12521800	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr5	174355404	174355405	chr5:174355405:C:T	rs75437378	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr5	174355432	174355433	chr5:174355433:T:C	rs2964111	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr5	174518444	174518445	chr5:174518445:A:C	rs2560346	A	C	A	Sox1_MA0870.1	28	0	-	0	0	.
chr5	174518462	174518463	chr5:174518463:A:G	rs10475601	A	G	A	Sox1_MA0870.1	10	1	-	6.082129623844024	-0.7265674602923107	AACTATTACATTGGC
chr5	174524539	174524540	chr5:174524540:C:T	rs10065187	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr5	174565611	174565612	chr5:174565612:A:T	rs1490042	A	T	A	Sox1_MA0870.1	4	1	+	9.893797260454154	3.116219006283967	CTCAATTTCATTGTA
chr5	174624567	174624568	chr5:174624568:T:C	rs7718005	T	C	C	Sox1_MA0870.1	9	1	-	4.958280559293025	-1.9504742200221963	AACACATGCAGTGCT
chr5	174737212	174737213	chr5:174737213:C:T	rs7733337	C	T	T	Sox1_MA0870.1	12	1	-	4.084671430849079	-2.8240833484661416	CACAATTTCTTTGCA
chr5	175352099	175352100	chr5:175352100:G:A	rs860676	G	A	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr5	175352105	175352106	chr5:175352106:T:A	rs56067739	T	A	T	Sox1_MA0870.1	5	1	+	4.5760655514136594	-0.4430644618968742	CACCATGCCATTGAC
chr5	175464773	175464774	chr5:175464774:G:A	rs143621318	G	A	G	Sox1_MA0870.1	11	1	-	3.8421946014935098	8.797589587303843	CACACTGTCAGCGTC
chr5	175892731	175892732	chr5:175892732:C:T	rs4867812	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr5	175892732	175892733	chr5:175892733:A:G	rs4867813	A	G	G	Sox1_MA0870.1	27	0	-	0	0	.
chr5	175923220	175923221	chr5:175923221:A:T	rs201025250	A	T	A	Sox1_MA0870.1	9	1	+	6.017514689092543	-0.8912400902226781	TACACTAGGATTGGT
chr5	176466940	176466941	chr5:176466941:C:A	rs2913730	C	A	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr5	176489247	176489248	chr5:176489248:T:C	rs2277068	T	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr5	176959439	176959440	chr5:176959440:G:A	rs150760221	G	A	-	Sox1_MA0870.1	-19	0	-	0	0	.
chr5	177151070	177151071	chr5:177151071:G:A	rs10039241	G	A	A	Sox1_MA0870.1	12	1	+	3.584040569956999	-3.324714209358221	AGCACTTCCATCGTG
chr5	177151074	177151075	chr5:177151075:C:G	rs76450189	C	G	C	Sox1_MA0870.1	16	0	+	0	0	.
chr5	178177133	178177134	chr5:178177134:T:C	rs7448252	T	C	T	Sox1_MA0870.1	3	1	-	13.756223760472473	6.855634093275247	AACAATAACAGTGTG
chr5	178195282	178195283	chr5:178195283:G:C	rs2913814	G	C	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr5	178349146	178349147	chr5:178349147:G:T	rs751181	G	T	T	Sox1_MA0870.1	12	1	+	4.453022841321629	-2.455731937993591	GAGAAAAACATTGTT
chr5	178539139	178539140	chr5:178539140:A:G	rs6889736	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr5	178765805	178765806	chr5:178765806:T:C	rs7703542	T	C	N	Sox1_MA0870.1	30	0	+	0	0	.
chr5	178792853	178792854	chr5:178792854:G:A	rs7711944	G	A	g	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	178931855	178931856	chr5:178931856:C:T	rs61744382	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr5	178999148	178999149	chr5:178999149:T:C	rs4700775	T	C	C	Sox1_MA0870.1	6	1	-	7.4222468724552755	5.883640179314557	GGCAATATCAGTGCT
chr5	179183026	179183027	chr5:179183027:T:C	rs3776819	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr5	179350633	179350634	chr5:179350634:C:T	rs4701099	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr5	179644923	179644924	chr5:179644924:G:A	rs141003025	G	A	g	Sox1_MA0870.1	-19	0	+	0	0	.
chr5	179644956	179644957	chr5:179644957:C:G	rs7731123	C	G	c	Sox1_MA0870.1	14	1	+	5.634183903291902	5.4195112200552025	ACCAATAACACTGTC
chr5	179750114	179750115	chr5:179750115:C:T	rs55827522	C	T	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr5	179768588	179768589	chr5:179768589:C:T	rs75697540	C	T	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr5	179768589	179768590	chr5:179768590:G:A	rs57463529	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr5	179768865	179768866	chr5:179768866:G:A	rs41285557	G	A	G	Sox1_MA0870.1	10	1	+	5.5255090407954395	0.9579368852226655	AACCCTTCCAGTGTC
chr5	179837914	179837915	chr5:179837915:G:T	rs1065154	G	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr5	180168859	180168860	chr5:180168860:G:C	rs57606278	G	C	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr5	180181359	180181360	chr5:180181360:T:C	rs11749727	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr5	180243515	180243516	chr5:180243516:A:G	rs4601008	A	G	A	Sox1_MA0870.1	11	1	-	3.8400054880378085	-1.115389497772526	TACAGTTTCAGTGTC
chr5	180243527	180243528	chr5:180243528:C:T	rs7445806	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr5	180519288	180519289	chr5:180519289:G:T	rs72811168	G	T	G	Sox1_MA0870.1	23	0	-	0	0	.
chr5	180519310	180519311	chr5:180519311:T:C	rs72812928	T	C	T	Sox1_MA0870.1	1	1	-	3.8902592949017456	-0.20803136049139526	CAAAATGGCAGTGTC
chr5	180564275	180564276	chr5:180564276:C:A	rs6889526	C	A	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr5	180643480	180643481	chr5:180643481:A:G	rs114629325	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr5	180840128	180840129	chr5:180840129:G:C	rs29654	G	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr5	181050448	181050449	chr5:181050449:C:G	rs7702426	C	G	c	Sox1_MA0870.1	14	1	-	3.4554216033816836	3.6700942866183826	CGCAGTACCATTGTG
chr5	181448645	181448646	chr5:181448646:G:A	rs140583535	G	A	g	Sox1_MA0870.1	-1	0	+	0	0	.
chr6	210910	210911	chr6:210911:C:T	rs111408476	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr6	273665	273666	chr6:273666:A:G	rs77076880	A	G	a	Sox1_MA0870.1	9	1	+	5.044159066881869	-1.8645957124333505	GGCAATACCACTGTT
chr6	342879	342880	chr6:342880:G:A	rs73717037	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr6	408993	408994	chr6:408994:G:A	rs74389255	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr6	453441	453442	chr6:453442:A:G	rs9503879	A	G	A	Sox1_MA0870.1	1	1	+	5.722801752256176	1.624511096863035	AACAATTCCATTACC
chr6	806537	806538	chr6:806538:C:T	rs2873399	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	812135	812136	chr6:812136:A:G	rs9505233	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	1198045	1198046	chr6:1198046:T:C	rs463443	T	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	1316215	1316216	chr6:1316216:G:A	rs2006798	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr6	1414449	1414450	chr6:1414450:G:A	rs7742720	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	1519504	1519505	chr6:1519505:T:C	rs57756311	T	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr6	1519510	1519511	chr6:1519511:A:T	rs57770600	A	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr6	1539019	1539020	chr6:1539020:C:T	chr6:1539020:C:T	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr6	1671132	1671133	chr6:1671133:A:G	rs763112092	A	G	G	Sox1_MA0870.1	18	0	-	0	0	.
chr6	1749284	1749285	chr6:1749285:G:A	rs1040528	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	1832701	1832702	chr6:1832702:T:C	rs3778533	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr6	1973294	1973295	chr6:1973295:C:A	rs936755	C	A	A	Sox1_MA0870.1	8	1	+	4.68767015060614	-1.2054995037120744	AACAATTACATTAGC
chr6	1973906	1973907	chr6:1973907:G:A	rs368265331	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	2054749	2054750	chr6:2054750:A:T	rs78906641	A	T	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr6	2080817	2080818	chr6:2080818:G:T	rs192765591	G	T	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	2157378	2157379	chr6:2157379:T:G	rs145764951	T	G	T	Sox1_MA0870.1	11	1	+	5.892868808118498	-1.0098638787383343	GGCAATATGATTGCT
chr6	2157400	2157401	chr6:2157401:C:A	rs142133468	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr6	2215591	2215592	chr6:2215592:A:G	rs12216224	A	G	A	Sox1_MA0870.1	4	1	+	4.58632122871281	-2.1912570254573764	AACCATATCAGTGGG
chr6	2246814	2246815	chr6:2246815:G:A	rs12198593	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr6	2411993	2411994	chr6:2411994:C:T	rs4959663	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr6	2429338	2429339	chr6:2429339:T:C	rs13196905	T	C	C	Sox1_MA0870.1	5	1	-	4.077078849339263	2.193044104002038	CTCAAAGGCATTGCT
chr6	2481055	2481056	chr6:2481056:A:G	rs1891199	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	2577652	2577653	chr6:2577653:G:A	rs1384535	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	2626905	2626906	chr6:2626906:C:T	rs9503235	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	2642627	2642628	chr6:2642628:T:C	rs9328111	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr6	2861396	2861397	chr6:2861397:T:C	rs62391492	T	C	-	Sox1_MA0870.1	23	0	-	0	0	.
chr6	2877669	2877670	chr6:2877670:G:A	rs7745181	G	A	A	Sox1_MA0870.1	1	1	+	3.887972869921549	7.9862635253146905	CGCAATTCCAGTGAC
chr6	3108672	3108673	chr6:3108673:G:A	rs9503400	G	A	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	3375462	3375463	chr6:3375463:T:G	rs6911308	T	G	T	Sox1_MA0870.1	11	1	-	3.153574538410144	5.100912239456642	ACCACTACCATAGTC
chr6	3549761	3549762	chr6:3549762:G:T	rs6934461	G	T	T	Sox1_MA0870.1	34	0	+	0	0	.
chr6	3607903	3607904	chr6:3607904:G:A	rs72845649	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	3641450	3641451	chr6:3641451:C:A	rs7763283	C	A	A	Sox1_MA0870.1	10	1	-	5.6475030685952365	7.888627997158798	AACAATTTCTGTGTC
chr6	3686184	3686185	chr6:3686185:G:T	rs7749290	G	T	G	Sox1_MA0870.1	28	0	+	0	0	.
chr6	3811312	3811313	chr6:3811313:C:T	rs76780062	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr6	3868717	3868718	chr6:3868718:G:A	rs2490030	G	A	G	Sox1_MA0870.1	13	1	-	3.433281823837258	5.610937121288251	GACGATGCCATTGCA
chr6	3892773	3892774	chr6:3892774:T:G	rs79269974	T	G	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	3943797	3943798	chr6:3943798:C:T	rs9503833	C	T	c	Sox1_MA0870.1	2	1	+	5.730966864374171	-1.177787914941049	AACGATTCCATTGCC
chr6	3955925	3955926	chr6:3955926:A:G	rs11755366	A	G	A	Sox1_MA0870.1	10	1	-	4.462615822654661	-2.3460812614816717	CACAGTAACATTGAA
chr6	4008720	4008721	chr6:4008721:A:C	rs73347781	A	C	A	Sox1_MA0870.1	11	1	-	5.806285094228642	-1.09644759262819	ACCAGTTGCATTGTT
chr6	4038717	4038718	chr6:4038718:C:T	rs4959918	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr6	4097677	4097678	chr6:4097678:G:A	rs707991	G	A	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	4163118	4163119	chr6:4163119:T:C	rs613546	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr6	4264304	4264305	chr6:4264305:C:A	rs7753647	C	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr6	4313101	4313102	chr6:4313102:G:T	rs9405721	G	T	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	4435116	4435117	chr6:4435117:C:T	rs79208893	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	4461163	4461164	chr6:4461164:A:G	chr6:4461164:A:G	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr6	4537464	4537465	chr6:4537465:A:G	rs72817657	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr6	5089043	5089044	chr6:5089044:A:G	rs463951	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr6	5098409	5098410	chr6:5098410:C:T	rs389707	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr6	5098419	5098420	chr6:5098420:C:T	rs389691	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr6	5102393	5102394	chr6:5102394:T:C	rs461144	T	C	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	5260271	5260272	chr6:5260272:G:A	rs6913120	G	A	A	Sox1_MA0870.1	10	1	+	4.430332766786688	-0.13723938878608444	AACTCTTCCAGTGCT
chr6	5319198	5319199	chr6:5319199:A:G	rs2753250	A	G	G	Sox1_MA0870.1	9	1	+	4.787259994129029	-2.1214947851861936	GTCACTACCAGTGCC
chr6	5556463	5556464	chr6:5556464:C:T	rs9504434	C	T	T	Sox1_MA0870.1	10	1	-	6.324063608233514	1.7564914526607414	TACAGTATCAGTGTT
chr6	5593846	5593847	chr6:5593847:A:G	rs9405853	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr6	5707704	5707705	chr6:5707705:A:T	rs78921673	A	T	A	Sox1_MA0870.1	27	0	-	0	0	.
chr6	5725997	5725998	chr6:5725998:A:C	rs17292578	A	C	A	Sox1_MA0870.1	30	0	+	0	0	.
chr6	5853510	5853511	chr6:5853511:C:T	rs75991116	C	T	C	Sox1_MA0870.1	7	1	-	7.018275754343776	7.415254082140283	CCCACTAGCATTGAT
chr6	5853512	5853513	chr6:5853513:A:G	rs796514270	A	G	A	Sox1_MA0870.1	5	1	-	7.018275754343776	0.11511099569601602	CCCACTAGCATTGAT
chr6	6260195	6260196	chr6:6260196:A:T	rs2815815	A	T	A	Sox1_MA0870.1	22	0	-	0	0	.
chr6	6553144	6553145	chr6:6553145:C:G	rs479251	C	G	C	Sox1_MA0870.1	32	0	+	0	0	.
chr6	6554817	6554818	chr6:6554818:C:T	rs623810	C	T	C	Sox1_MA0870.1	8	1	+	3.524793595577302	-0.6568159510599799	ATCACTACCACTGTG
chr6	6662705	6662706	chr6:6662706:A:G	rs201011	A	G	G	Sox1_MA0870.1	3	1	+	7.439158174046554	0.5385685068493267	TCCACTATCATTGCT
chr6	6673285	6673286	chr6:6673286:G:A	rs9328381	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	6684955	6684956	chr6:6684956:C:G	rs74729012	C	G	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	6691908	6691909	chr6:6691909:T:C	rs115560	T	C	C	Sox1_MA0870.1	17	0	-	0	0	.
chr6	6741475	6741476	chr6:6741476:T:C	rs9504912	T	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr6	6914396	6914397	chr6:6914397:T:C	rs9392843	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr6	7050759	7050760	chr6:7050760:C:G	rs79103204	C	G	C	Sox1_MA0870.1	4	1	-	6.904598576344791	11.725363895889764	GACAGTTACATTGTG
chr6	7216013	7216014	chr6:7216014:C:T	rs2151942	C	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr6	7438836	7438837	chr6:7438837:G:A	rs11243180	G	A	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	7455114	7455115	chr6:7455115:A:T	rs2147404	A	T	A	Sox1_MA0870.1	32	0	+	0	0	.
chr6	7642799	7642800	chr6:7642800:C:T	rs9392164	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	7642836	7642837	chr6:7642837:A:C	rs9392165	A	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr6	7705770	7705771	chr6:7705771:G:A	rs6927500	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	7730692	7730693	chr6:7730693:C:T	rs543418575	C	T	C	Sox1_MA0870.1	12	1	-	5.479687993490796	-1.4290667858244244	CGCAATAACTTTGTT
chr6	7730710	7730711	chr6:7730711:A:G	rs7753111	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	7743429	7743430	chr6:7743430:G:A	rs9505270	G	A	A	Sox1_MA0870.1	16	0	-	0	0	.
chr6	7824096	7824097	chr6:7824097:T:C	rs6913356	T	C	T	Sox1_MA0870.1	0	1	-	3.462698285429985	2.120575142623231	ACCACTAACACTGTG
chr6	8085644	8085645	chr6:8085645:C:G	rs12197549	C	G	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	8230537	8230538	chr6:8230538:T:C	rs17179618	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr6	8441612	8441613	chr6:8441613:A:G	rs78105287	A	G	G	Sox1_MA0870.1	16	0	-	0	0	.
chr6	8539439	8539440	chr6:8539440:G:A	rs2015281	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr6	8628945	8628946	chr6:8628946:T:A	rs330102	T	A	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	8652052	8652053	chr6:8652053:G:A	rs2039111	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr6	8838547	8838548	chr6:8838548:G:C	rs9505549	G	C	G	Sox1_MA0870.1	15	0	+	0	0	.
chr6	8960482	8960483	chr6:8960483:A:C	rs9791250	A	C	A	Sox1_MA0870.1	5	1	-	5.2661102826387465	-1.6370544760090135	CACACTTTGATTGCA
chr6	9307851	9307852	chr6:9307852:T:C	rs9295671	T	C	T	Sox1_MA0870.1	4	1	-	5.869319886720101	-0.9082583674500887	AGCTATAACAGTGTT
chr6	9456978	9456979	chr6:9456979:C:T	rs188930523	C	T	C	Sox1_MA0870.1	2	1	+	6.360509894962674	-0.5482448843525467	AACAATCCCATTGGA
chr6	9522498	9522499	chr6:9522499:C:T	rs114334891	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	9621460	9621461	chr6:9621461:C:T	rs773106914	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr6	9658171	9658172	chr6:9658172:C:T	rs12198882	C	T	T	Sox1_MA0870.1	8	1	+	6.319007014249268	2.137397467611986	AGCAATAGCATTTTT
chr6	9936601	9936602	chr6:9936602:T:C	rs73720672	T	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	10033092	10033093	chr6:10033093:T:C	rs12209628	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	10033121	10033122	chr6:10033122:A:G	rs10484258	A	G	A	Sox1_MA0870.1	21	0	+	0	0	.
chr6	10235680	10235681	chr6:10235681:A:G	rs17556952	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr6	10236676	10236677	chr6:10236677:G:A	rs67529084	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr6	10295778	10295779	chr6:10295779:A:G	rs9465864	A	G	G	Sox1_MA0870.1	11	1	-	5.30467153393532	0.34927654812498543	GACAATAGGATTCTT
chr6	10460504	10460505	chr6:10460505:T:A	rs9348516	T	A	T	Sox1_MA0870.1	0	1	-	3.5758180857665445	1.637143980064082	AACAATACCACTTTT
chr6	10722339	10722340	chr6:10722340:C:G	rs12663432	C	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	11277672	11277673	chr6:11277673:T:C	rs1018374	T	C	T	Sox1_MA0870.1	11	1	+	4.887899067704643	-0.06749591810569078	GCCCATAGCAGTGTT
chr6	11398888	11398889	chr6:11398889:A:G	rs6912346	A	G	A	Sox1_MA0870.1	11	1	-	5.090360949506559	0.13496596369622538	AGCAATAACAATGTG
chr6	11398890	11398891	chr6:11398891:T:C	rs6916980	T	C	T	Sox1_MA0870.1	9	1	-	5.090360949506559	-1.8183938298086608	AGCAATAACAATGTG
chr6	11430880	11430881	chr6:11430881:T:G	rs12664948	T	G	T	Sox1_MA0870.1	3	1	-	4.297704482735721	-0.7880604423024542	CACAATACCATAGAC
chr6	11433127	11433128	chr6:11433128:T:A	rs6909496	T	A	T	Sox1_MA0870.1	32	0	-	0	0	.
chr6	11495814	11495815	chr6:11495815:A:C	rs9348895	A	C	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr6	11497077	11497078	chr6:11497078:C:T	rs79722961	C	T	c	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	11669280	11669281	chr6:11669281:A:G	rs821158	A	G	a	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	11767602	11767603	chr6:11767603:C:T	rs146574481	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr6	12070028	12070029	chr6:12070029:T:A	chr6:12070029:T:A	T	A	T	Sox1_MA0870.1	22	0	+	0	0	.
chr6	12234965	12234966	chr6:12234966:T:C	rs4490660	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr6	12278459	12278460	chr6:12278460:G:A	rs75335602	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr6	12679671	12679672	chr6:12679672:A:G	rs12196110	A	G	A	Sox1_MA0870.1	7	1	-	5.487644044016346	5.499473096564719	ATCACTTTCAGTGAT
chr6	12865416	12865417	chr6:12865417:A:G	rs9296495	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr6	12865458	12865459	chr6:12865459:T:G	rs56712240	T	G	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	12887232	12887233	chr6:12887233:G:A	rs10456561	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr6	12974145	12974146	chr6:12974146:C:T	rs4715032	C	T	T	Sox1_MA0870.1	2	1	+	3.647023751387426	-3.2617310279277985	ACCCCTGACATTGTG
chr6	13178377	13178378	chr6:13178378:A:G	rs4097413	A	G	A	Sox1_MA0870.1	7	1	+	4.626319006112381	4.229340678315874	CACAATTACACTGCA
chr6	13260220	13260221	chr6:13260221:C:T	rs396360	C	T	T	Sox1_MA0870.1	13	1	-	4.744385162203448	5.041406862251362	ATCCATTACATTGGT
chr6	13426551	13426552	chr6:13426552:C:A	rs7758003	C	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr6	13553810	13553811	chr6:13553811:A:G	rs4712032	A	G	A	Sox1_MA0870.1	6	1	+	7.524639716008872	5.986033022868154	GACCATAAGATTGTT
chr6	13581854	13581855	chr6:13581855:T:C	rs192200464	T	C	T	Sox1_MA0870.1	10	1	+	4.04228776393619	-2.7664093202001427	AACAGGAACATTGTT
chr6	13914637	13914638	chr6:13914638:C:T	rs9475771	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr6	14259939	14259940	chr6:14259940:C:A	rs9464672	C	A	C	Sox1_MA0870.1	31	0	-	0	0	.
chr6	14367335	14367336	chr6:14367336:T:C	rs9476543	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	14653070	14653071	chr6:14653071:T:C	rs2027490	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr6	14884164	14884165	chr6:14884165:G:C	rs52875	G	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	14925777	14925778	chr6:14925778:T:G	rs6912023	T	G	T	Sox1_MA0870.1	34	0	-	0	0	.
chr6	14975127	14975128	chr6:14975128:G:A	rs17529181	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	15256836	15256837	chr6:15256837:G:A	rs10949287	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr6	15258067	15258068	chr6:15258068:C:A	rs1077080	C	A	A	Sox1_MA0870.1	1	1	+	7.328394040521456	11.097534425365955	CCCAATCACATTGTT
chr6	15285077	15285078	chr6:15285078:A:T	rs116599870	A	T	A	Sox1_MA0870.1	19	0	+	0	0	.
chr6	15484501	15484502	chr6:15484502:G:A	rs6917591	G	A	G	Sox1_MA0870.1	0	1	-	5.601349344747515	4.898972587600033	CACAATCAGATTGTG
chr6	15497362	15497363	chr6:15497363:T:C	rs58121172	T	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr6	15620623	15620624	chr6:15620624:C:G	rs2619539	C	G	G	Sox1_MA0870.1	2	1	+	6.24423997773668	-0.6645148015785406	AACACTATCATAGCT
chr6	15789878	15789879	chr6:15789879:G:T	rs220923	G	T	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	15901780	15901781	chr6:15901781:T:C	rs808362	T	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr6	15901813	15901814	chr6:15901814:G:A	chr6:15901814:G:A	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	16033453	16033454	chr6:16033454:C:T	rs9297000	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr6	16080443	16080444	chr6:16080444:A:C	rs4716041	A	C	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	16215618	16215619	chr6:16215619:C:T	rs61569822	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr6	16440801	16440802	chr6:16440802:T:C	rs1709172	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr6	16921544	16921545	chr6:16921545:C:T	rs6904876	C	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr6	16921545	16921546	chr6:16921546:G:A	rs73725283	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr6	17395068	17395069	chr6:17395069:G:A	rs4716140	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	17516939	17516940	chr6:17516940:T:G	rs4716147	T	G	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	17587926	17587927	chr6:17587927:A:G	rs942465	A	G	A	Sox1_MA0870.1	11	1	-	3.8070024076593665	-1.148392578150967	GACAATAGCAATGGG
chr6	17665247	17665248	chr6:17665248:G:C	rs6906499	G	C	T	Sox1_MA0870.1	2	1	-	5.483031958313905	-1.4257228210013153	AACAAGTGCAGTGTG
chr6	17829524	17829525	chr6:17829525:T:C	rs10949457	T	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	18094529	18094530	chr6:18094530:A:C	rs9477610	A	C	C	Sox1_MA0870.1	3	1	+	5.759675430266222	0.6739105052280455	AACAATTATACTGTT
chr6	18284484	18284485	chr6:18284485:C:T	rs214544	C	T	C	Sox1_MA0870.1	13	1	-	5.790312668510574	6.087334368558488	AACAAATGCATTGGA
chr6	18336161	18336162	chr6:18336162:T:A	rs1324429	T	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr6	18352744	18352745	chr6:18352745:A:C	rs1951924	A	C	.	Sox1_MA0870.1	3	1	+	6.481304997760525	1.3955400727223495	AACACTTTTATTGCC
chr6	18364501	18364502	chr6:18364502:G:C	rs6928572	G	C	c	Sox1_MA0870.1	24	0	-	0	0	.
chr6	18514430	18514431	chr6:18514431:G:C	rs1535935	G	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr6	18937880	18937881	chr6:18937881:A:G	rs9383447	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr6	19169410	19169411	chr6:19169411:T:A	rs16881759	T	A	T	Sox1_MA0870.1	19	0	-	0	0	.
chr6	19590765	19590766	chr6:19590766:T:C	rs185256013	T	C	T	Sox1_MA0870.1	0	1	+	4.312674445819068	5.015051202966549	TACTATGACAGTGCT
chr6	19628108	19628109	chr6:19628109:A:G	rs2328483	A	G	A	Sox1_MA0870.1	0	1	-	5.96178294400471	6.66415970115219	TATAATTCCATTGTC
chr6	19664249	19664250	chr6:19664250:C:T	rs12197609	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr6	19865457	19865458	chr6:19865458:C:T	rs13210561	C	T	C	Sox1_MA0870.1	8	1	+	4.253086149867335	0.07147660323005345	AACACAGACATCGTT
chr6	20302739	20302740	chr6:20302740:G:A	rs6456329	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	20665498	20665499	chr6:20665499:T:C	rs58048170	T	C	C	Sox1_MA0870.1	5	1	+	6.774749943005336	-0.12841481564242307	AAGAATAGCATTGGT
chr6	20741077	20741078	chr6:20741078:T:A	rs62399291	T	A	A	Sox1_MA0870.1	28	0	-	0	0	.
chr6	20804331	20804332	chr6:20804332:T:C	rs9465895	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	20826427	20826428	chr6:20826428:A:G	rs192213622	A	G	A	Sox1_MA0870.1	14	1	-	4.829643079044435	3.3186336745630305	CACAATTCCATTTAT
chr6	20826433	20826434	chr6:20826434:G:T	rs189088108	G	T	G	Sox1_MA0870.1	8	1	-	4.829643079044435	-1.063526575273778	CACAATTCCATTTAT
chr6	20826442	20826443	chr6:20826443:T:C	rs184805301	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	20827813	20827814	chr6:20827814:T:G	rs190783796	T	G	T	Sox1_MA0870.1	32	0	-	0	0	.
chr6	20990852	20990853	chr6:20990853:G:A	rs12528036	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr6	21045083	21045084	chr6:21045084:A:G	rs201322	A	G	A	Sox1_MA0870.1	6	1	+	5.969745652008736	4.431138958868019	TACTATAGCATTGCG
chr6	21457718	21457719	chr6:21457719:C:T	rs11758386	C	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	21666168	21666169	chr6:21666169:A:G	rs966941278	A	G	A	Sox1_MA0870.1	10	1	-	6.554496392812229	-0.2542006913241025	TCCAAAATCATTGTT
chr6	21666195	21666196	chr6:21666196:C:T	rs76062205	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr6	21893677	21893678	chr6:21893678:G:A	rs9350391	G	A	g	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	21972765	21972766	chr6:21972766:G:T	rs150234965	G	T	G	Sox1_MA0870.1	30	0	-	0	0	.
chr6	22003281	22003282	chr6:22003282:T:C	rs4710997	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	22098977	22098978	chr6:22098978:A:G	rs140546200	A	G	A	Sox1_MA0870.1	7	1	+	5.598317644575317	5.20133931677881	TTTAATAACATTGTT
chr6	22209380	22209381	chr6:22209381:T:C	rs13198653	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr6	22366580	22366581	chr6:22366581:G:A	rs1205917	G	A	A	Sox1_MA0870.1	28	0	-	0	0	.
chr6	22421125	22421126	chr6:22421126:A:T	rs4370356	A	T	A	Sox1_MA0870.1	0	1	+	8.652335249245407	6.713661143542947	ATCACTGGCATTGTA
chr6	22467148	22467149	chr6:22467149:C:T	rs62390206	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	22809565	22809566	chr6:22809566:T:C	rs35349492	T	C	T	Sox1_MA0870.1	4	1	-	9.089568285927058	2.3119900317568693	TCCAATTTCATTGTC
chr6	22845822	22845823	chr6:22845823:A:G	rs1018401	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr6	23184596	23184597	chr6:23184597:C:T	rs12524736	C	T	C	Sox1_MA0870.1	14	1	-	5.140826549729098	4.965495312662054	GGCAAAAGCATTGTG
chr6	24054977	24054978	chr6:24054978:G:A	rs138541100	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	24077202	24077203	chr6:24077203:G:A	rs12210651	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr6	24219931	24219932	chr6:24219932:C:T	rs62403464	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	24229768	24229769	chr6:24229769:A:T	rs793838	A	T	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	24447151	24447152	chr6:24447152:A:T	rs113984289	A	T	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	24614834	24614835	chr6:24614835:G:A	rs7763790	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr6	24644029	24644030	chr6:24644030:T:C	rs115563696	T	C	T	Sox1_MA0870.1	10	1	+	6.306716494181186	-0.501980589955148	CTCAATAACATAGTT
chr6	24895391	24895392	chr6:24895392:C:T	rs117398844	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr6	24899339	24899340	chr6:24899340:C:A	rs2817723	C	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr6	25005405	25005406	chr6:25005406:A:G	rs1536768	A	G	G	Sox1_MA0870.1	33	0	-	0	0	.
chr6	25138479	25138480	chr6:25138480:T:C	rs572255189	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr6	25138494	25138495	chr6:25138495:C:T	rs303019	C	T	T	Sox1_MA0870.1	10	1	-	9.397593604825024	4.830021449252251	GCCAATTACAGTGTT
chr6	25318817	25318818	chr6:25318818:A:G	rs113875637	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	25503506	25503507	chr6:25503507:C:T	rs17253044	C	T	C	Sox1_MA0870.1	2	1	+	6.997828182059555	0.08907340274433329	GACACTTTGAGTGTT
chr6	25695962	25695963	chr6:25695963:T:C	rs62393720	T	C	T	Sox1_MA0870.1	5	1	+	5.267261804896369	-1.635902953751393	AACACTAACATCGGA
chr6	25749370	25749371	chr6:25749371:T:C	rs9379791	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr6	25764911	25764912	chr6:25764912:A:G	rs2154217	A	G	A	Sox1_MA0870.1	10	1	-	9.785052690873389	2.9763556067370542	TGCAATAACATTGTA
chr6	25776720	25776721	chr6:25776721:G:A	rs11754288	G	A	G	Sox1_MA0870.1	6	1	+	4.939344241951488	6.477950935092208	TTCACTGCCATTGGT
chr6	25911546	25911547	chr6:25911547:T:C	rs3846838	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr6	25925758	25925759	chr6:25925759:G:A	rs3734523	G	A	G	Sox1_MA0870.1	10	1	+	3.0282056306278324	-1.5393665249449406	AACAAGAGCAGTGGC
chr6	26045224	26045225	chr6:26045225:G:A	rs75637109	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	26057552	26057553	chr6:26057553:A:C	rs13201821	A	C	A	Sox1_MA0870.1	11	1	-	6.514893694865702	-0.38783899199113014	TTCAAATACATTGTT
chr6	26199539	26199540	chr6:26199540:G:T	rs201327765	G	T	G	Sox1_MA0870.1	27	0	+	0	0	.
chr6	26271484	26271485	chr6:26271485:A:T	rs9393690	A	T	.	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	26303329	26303330	chr6:26303330:A:G	rs73397347	A	G	a	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	26316594	26316595	chr6:26316595:T:C	rs75939831	T	C	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	26322395	26322396	chr6:26322396:G:T	rs73399394	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	26372598	26372599	chr6:26372599:C:T	rs12174602	C	T	C	Sox1_MA0870.1	12	1	-	3.7807114725043336	-3.128043306810886	CACATTTACATCGTT
chr6	26568512	26568513	chr6:26568513:C:T	rs1078679	C	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	27583429	27583430	chr6:27583430:T:G	rs73739148	T	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr6	27680270	27680271	chr6:27680271:C:G	rs117974412	C	G	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr6	28283206	28283207	chr6:28283207:G:A	rs6901575	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	28283207	28283208	chr6:28283208:C:T	rs9468325	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	28292665	28292666	chr6:28292666:C:G	rs11758337	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr6	28317490	28317491	chr6:28317491:T:C	rs775764705	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr6	28607394	28607395	chr6:28607395:T:A	rs1474986	T	A	T	Sox1_MA0870.1	29	0	+	0	0	.
chr6	28643601	28643602	chr6:28643602:C:T	rs114882957	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	28648494	28648495	chr6:28648495:T:A	rs193186834	T	A	T	Sox1_MA0870.1	7	1	+	4.642976903986013	5.084566784070428	AACAATGTCAGCGCG
chr6	28710153	28710154	chr6:28710154:A:G	rs116246293	A	G	G	Sox1_MA0870.1	25	0	-	0	0	.
chr6	29017412	29017413	chr6:29017413:G:A	rs929472074	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	29017427	29017428	chr6:29017428:A:G	rs9380103	A	G	A	Sox1_MA0870.1	0	1	+	5.417843044887834	4.075719902081082	AACACTGACATTTTA
chr6	29514170	29514171	chr6:29514171:G:A	rs1010409	G	A	A	Sox1_MA0870.1	7	1	+	8.677075690073218	9.074054017869726	AACACTGGCATTGGC
chr6	29516332	29516333	chr6:29516333:G:A	rs2523432	G	A	G	Sox1_MA0870.1	0	1	+	3.915717194392419	5.2578403371991715	GACACTAGTAGTGCC
chr6	29516346	29516347	chr6:29516347:C:T	rs147831673	C	T	C	Sox1_MA0870.1	14	1	+	3.915717194392419	5.426726598873824	GACACTAGTAGTGCC
chr6	29695824	29695825	chr6:29695825:A:G	rs79612264	A	G	A	Sox1_MA0870.1	9	1	+	4.7768669929114	-2.13188778640382	CACACTGCCAGTGGA
chr6	29722916	29722917	chr6:29722917:C:G	rs3998799	C	G	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	29726160	29726161	chr6:29726161:G:A	rs2735061	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	29726191	29726192	chr6:29726192:C:T	rs1736922	C	T	C	Sox1_MA0870.1	14	1	+	5.020537271331104	6.531546675812509	ATCACTGACAGTGCC
chr6	29753619	29753620	chr6:29753620:G:C	rs2394164	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr6	29753637	29753638	chr6:29753638:A:G	rs1610625	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr6	29770215	29770216	chr6:29770216:C:G	rs1737028	C	G	G	Sox1_MA0870.1	30	0	-	0	0	.
chr6	29802775	29802776	chr6:29802776:C:A	rs1611189	C	A	-	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	29814249	29814250	chr6:29814250:C:T	rs1610706	C	T	-	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	29814270	29814271	chr6:29814271:C:A	rs1610707	C	A	-	Sox1_MA0870.1	8	1	+	7.550343632325127	1.657173978006913	AACAAAAACATTGGC
chr6	29886430	29886431	chr6:29886431:T:C	rs2394236	T	C	-	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	29891826	29891827	chr6:29891827:C:T	rs9259299	C	T	-	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	29891843	29891844	chr6:29891844:T:C	rs9259300	T	C	-	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	29941198	29941199	chr6:29941199:C:T	rs74218766	C	T	-	Sox1_MA0870.1	29	0	-	0	0	.
chr6	29941243	29941244	chr6:29941244:C:G	rs2571420	C	G	-	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	29966103	29966104	chr6:29966104:T:A	rs6457110	T	A	-	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	29966570	29966571	chr6:29966571:A:C	rs17186475	A	C	-	Sox1_MA0870.1	1	1	+	3.2236134019321554	-0.5455269829123425	CACAATGGCTGTGCT
chr6	29977730	29977731	chr6:29977731:C:T	rs9260860	C	T	-	Sox1_MA0870.1	12	1	-	5.3653851565923425	-1.5433696227228784	AACAAAACCCTTGTT
chr6	29977816	29977817	chr6:29977817:C:T	rs9260861	C	T	-	Sox1_MA0870.1	2	1	+	4.927062346830284	-1.981692432484937	CACACAATCAGTGTA
chr6	29977824	29977825	chr6:29977825:G:A	rs2246198	G	A	-	Sox1_MA0870.1	10	1	+	4.927062346830284	0.3594901912575108	CACACAATCAGTGTA
chr6	30034663	30034664	chr6:30034664:C:G	rs3121594	C	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr6	30062411	30062412	chr6:30062412:T:A	rs9261271	T	A	T	Sox1_MA0870.1	33	0	+	0	0	.
chr6	30129392	30129393	chr6:30129393:T:A	rs1419671	T	A	T	Sox1_MA0870.1	10	1	-	4.181851263444383	10.990548347580717	CACAATAAGAATGTG
chr6	30170384	30170385	chr6:30170385:C:G	rs1029239	C	G	G	Sox1_MA0870.1	8	1	+	4.886055805924081	1.1155528130237449	CTCAATTTCATTATT
chr6	30207794	30207795	chr6:30207795:C:T	rs150308202	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr6	30238408	30238409	chr6:30238409:G:A	rs10456378	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	30244027	30244028	chr6:30244028:G:A	rs3132664	G	A	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr6	30319739	30319740	chr6:30319740:C:G	rs6931387	C	G	G	Sox1_MA0870.1	10	1	-	4.171556845440312	-0.3960153101324606	GACCCTTTCAGTGTC
chr6	30405034	30405035	chr6:30405035:G:T	rs1264562	G	T	-	Sox1_MA0870.1	23	0	-	0	0	.
chr6	30534746	30534747	chr6:30534747:C:G	rs531906160	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr6	30785580	30785581	chr6:30785581:T:C	rs9468834	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	30834518	30834519	chr6:30834519:G:A	chr6:30834519:G:A	G	A	G	Sox1_MA0870.1	12	1	+	5.248106565996308	-1.6606482133189124	GACCATGCCATTGCA
chr6	30971105	30971106	chr6:30971106:A:G	rs9368649	A	G	A	Sox1_MA0870.1	11	1	-	10.989078692218529	6.033683706408197	GACAATTACAGTGCT
chr6	31012132	31012133	chr6:31012133:T:C	rs9262461	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	31012155	31012156	chr6:31012156:T:C	rs9380204	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr6	31087423	31087424	chr6:31087424:T:G	rs17190407	T	G	t	Sox1_MA0870.1	14	1	+	9.472152854632164	7.74647076691406	GAAAATAACATTGTT
chr6	31205990	31205991	chr6:31205991:A:G	rs12660585	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr6	31245724	31245725	chr6:31245725:G:A	rs2394897	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr6	31274059	31274060	chr6:31274060:C:T	rs3130447	C	T	T	Sox1_MA0870.1	7	1	-	5.398167656331875	5.795145984128384	AATAAAAGCATTGTT
chr6	31274060	31274061	chr6:31274061:T:C	rs3094681	T	C	C	Sox1_MA0870.1	6	1	-	5.398167656331875	3.859560963191157	AATAAAAGCATTGTT
chr6	31351679	31351680	chr6:31351680:C:T	rs9266064	C	T	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	31351700	31351701	chr6:31351701:A:G	rs9266065	A	G	A	Sox1_MA0870.1	6	1	+	7.279603503213158	5.74099681007244	AGCAATAGGATTGCT
chr6	31351711	31351712	chr6:31351712:C:T	rs9405083	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr6	31380802	31380803	chr6:31380803:A:G	rs9266689	A	G	a	Sox1_MA0870.1	24	0	-	0	0	.
chr6	31394532	31394533	chr6:31394533:C:T	rs16899524	C	T	C	Sox1_MA0870.1	2	1	+	4.092836542967075	-2.8159182363481468	CACGATTTCATTGCA
chr6	31405940	31405941	chr6:31405941:C:G	rs9295988	C	G	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	31422843	31422844	chr6:31422844:T:C	rs2516447	T	C	-	Sox1_MA0870.1	-12	0	+	0	0	.
chr6	31422859	31422860	chr6:31422860:A:G	rs58045889	A	G	-	Sox1_MA0870.1	4	1	+	4.350707253810819	-2.4268710003593688	CACAATGACATTCCC
chr6	31463111	31463112	chr6:31463112:T:C	rs6928071	T	C	-	Sox1_MA0870.1	18	0	+	0	0	.
chr6	31473284	31473285	chr6:31473285:A:C	rs62395330	A	C	-	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	31557541	31557542	chr6:31557542:C:T	rs2239707	C	T	T	Sox1_MA0870.1	30	0	+	0	0	.
chr6	31727659	31727660	chr6:31727660:G:A	rs138907940	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	31810494	31810495	chr6:31810495:G:A	rs2227956	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	32079658	32079659	chr6:32079659:C:G	rs204877	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr6	32112561	32112562	chr6:32112562:C:T	rs115346508	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	32112565	32112566	chr6:32112566:T:G	chr6:32112566:T:G	T	G	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	32560478	32560479	chr6:32560479:G:A	rs113508557	G	A	.	Sox1_MA0870.1	27	0	-	0	0	.
chr6	32639675	32639676	chr6:32639676:C:T	rs9272583	C	T	.	Sox1_MA0870.1	28	0	-	0	0	.
chr6	32805264	32805265	chr6:32805265:T:G	rs2199871	T	G	g	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	32957812	32957813	chr6:32957813:T:G	rs35546426	T	G	T	Sox1_MA0870.1	31	0	-	0	0	.
chr6	33072320	33072321	chr6:33072321:C:T	rs4345439	C	T	c	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	33082721	33082722	chr6:33082722:A:G	rs9277386	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	33123279	33123280	chr6:33123280:C:T	rs3117024	C	T	C	Sox1_MA0870.1	12	1	-	4.701578667454088	-2.2071761118611324	GACACTTCCACTGTC
chr6	33128977	33128978	chr6:33128978:A:G	rs3117005	A	G	G	Sox1_MA0870.1	13	1	-	4.707346766526973	2.5296914690759786	CATACTTCCATTGTC
chr6	33128988	33128989	chr6:33128989:A:G	rs3117004	A	G	G	Sox1_MA0870.1	2	1	-	4.707346766526973	11.616101545842193	CATACTTCCATTGTC
chr6	33128998	33128999	chr6:33128999:C:T	rs56217718	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	33178969	33178970	chr6:33178970:G:A	rs145499142	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr6	33228227	33228228	chr6:33228228:G:A	rs213195	G	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	33429698	33429699	chr6:33429699:C:T	rs139673206	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	33820322	33820323	chr6:33820323:G:A	rs76514505	G	A	G	Sox1_MA0870.1	10	1	-	2.6625316639943994	9.471228748130732	CACACTTGCACTGCC
chr6	33854754	33854755	chr6:33854755:A:G	rs6938075	A	G	G	Sox1_MA0870.1	13	1	-	4.169995797314408	1.9923404998634147	GCCAAGGACATTGTT
chr6	33858792	33858793	chr6:33858793:G:A	rs4713696	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	33936251	33936252	chr6:33936252:T:C	rs10947468	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr6	34055632	34055633	chr6:34055633:G:A	rs565659861	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	34157003	34157004	chr6:34157004:A:G	rs59338676	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr6	34160312	34160313	chr6:34160313:C:A	rs9368797	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	34160324	34160325	chr6:34160325:T:C	rs75293058	T	C	T	Sox1_MA0870.1	5	1	+	8.7327886764256	1.829623917777841	ACCACTGACATTGTG
chr6	34231031	34231032	chr6:34231032:C:A	rs9688762	C	A	C	Sox1_MA0870.1	7	1	+	4.7919047787828815	5.221665606318923	TACAAAACCATTGGA
chr6	34755326	34755327	chr6:34755327:T:A	rs61407926	T	A	T	Sox1_MA0870.1	25	0	-	0	0	.
chr6	35142966	35142967	chr6:35142967:C:G	chr6:35142967:C:G	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr6	35169212	35169213	chr6:35169213:T:C	rs62404583	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr6	35210027	35210028	chr6:35210028:A:G	rs73748069	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr6	35282662	35282663	chr6:35282663:C:A	rs2267662	C	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr6	35344802	35344803	chr6:35344803:T:C	rs75205617	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	35415645	35415646	chr6:35415646:G:A	rs78609397	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	35458397	35458398	chr6:35458398:C:T	rs3823434	C	T	c	Sox1_MA0870.1	15	0	-	0	0	.
chr6	35611224	35611225	chr6:35611225:A:G	rs3777747	A	G	A	Sox1_MA0870.1	11	1	-	5.845356756941161	0.8899617711308265	ATCAATAATAGTGCT
chr6	35665139	35665140	chr6:35665140:C:A	rs75710780	C	A	C	Sox1_MA0870.1	12	1	-	6.011142908120104	-0.897611871195116	TTCACTAGCAGTGTA
chr6	35708540	35708541	chr6:35708541:T:C	rs6457842	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr6	35741175	35741176	chr6:35741176:G:A	rs6936778	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	35771856	35771857	chr6:35771857:A:G	rs2817063	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr6	35856536	35856537	chr6:35856537:A:G	rs9470141	A	G	G	Sox1_MA0870.1	1	1	+	6.703916608384488	2.6056259529913475	CAGAATTACATTGTA
chr6	36024113	36024114	chr6:36024114:A:G	rs612049	A	G	A	Sox1_MA0870.1	1	1	+	4.697567692728359	0.5992770373352178	AACAAAAGCAGTGGG
chr6	36110183	36110184	chr6:36110184:G:A	rs3804451	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr6	36126972	36126973	chr6:36126973:T:C	rs73413618	T	C	T	Sox1_MA0870.1	6	1	-	6.185895154788993	4.647288461648275	AACACTATGATTGGG
chr6	36301825	36301826	chr6:36301826:G:A	rs10947600	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr6	36353571	36353572	chr6:36353572:G:T	rs78382807	G	T	g	Sox1_MA0870.1	0	1	-	7.0851549257159565	8.321452274270936	CTCACTAGGATTGTT
chr6	36379151	36379152	chr6:36379152:A:G	rs11759903	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr6	36379196	36379197	chr6:36379197:G:A	rs11755362	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr6	36501832	36501833	chr6:36501833:G:A	rs62402198	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	36573544	36573545	chr6:36573545:G:A	rs606781	G	A	-	Sox1_MA0870.1	27	0	+	0	0	.
chr6	36610728	36610729	chr6:36610729:T:C	rs73408383	T	C	C	Sox1_MA0870.1	3	1	-	5.635554508909791	-1.2650351582874353	GACAATGGCATTTTA
chr6	36631232	36631233	chr6:36631233:T:C	rs4713987	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr6	36651072	36651073	chr6:36651073:G:A	rs75243073	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr6	36889819	36889820	chr6:36889820:G:A	rs3957238	G	A	-	Sox1_MA0870.1	0	1	-	3.927472521608889	3.2250957644614084	CACACAACCATTGGC
chr6	36976777	36976778	chr6:36976778:C:T	rs3778024	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	36985490	36985491	chr6:36985491:A:T	rs12213465	A	T	A	Sox1_MA0870.1	30	0	+	0	0	.
chr6	37017037	37017038	chr6:37017038:T:C	rs1547571	T	C	T	Sox1_MA0870.1	2	1	+	4.708120571039611	11.616875350354832	TATAATAGGATTGTT
chr6	37102919	37102920	chr6:37102920:T:C	rs183698375	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr6	37103126	37103127	chr6:37103127:G:A	rs77439431	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	37183437	37183438	chr6:37183438:C:T	rs866217038	C	T	C	Sox1_MA0870.1	29	0	+	0	0	.
chr6	37560692	37560693	chr6:37560693:T:C	rs2776892	T	C	T	Sox1_MA0870.1	9	1	-	4.400813483524721	-2.507941295790499	GGCAATTACATTCTT
chr6	37620786	37620787	chr6:37620787:C:A	rs2179782	C	A	C	Sox1_MA0870.1	25	0	+	0	0	.
chr6	37764923	37764924	chr6:37764924:T:C	rs11756581	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	37877753	37877754	chr6:37877754:A:G	rs35806631	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	37941307	37941308	chr6:37941308:G:A	rs2842510	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	38427956	38427957	chr6:38427957:C:T	rs80089404	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr6	38770971	38770972	chr6:38770972:A:T	rs1614699	A	T	T	Sox1_MA0870.1	4	1	+	9.03954457002304	2.2619663158528507	TACAAAAACATTGTG
chr6	38876554	38876555	chr6:38876555:G:A	rs111639657	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	39063262	39063263	chr6:39063263:A:G	rs877446	A	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr6	39145017	39145018	chr6:39145018:G:A	rs116389770	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr6	39154051	39154052	chr6:39154052:C:T	rs1366323	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr6	39270501	39270502	chr6:39270502:G:A	rs2815020	G	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr6	39285784	39285785	chr6:39285785:A:T	rs1885616	A	T	A	Sox1_MA0870.1	19	0	-	0	0	.
chr6	39285838	39285839	chr6:39285839:G:A	rs1885617	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	39371236	39371237	chr6:39371237:C:T	rs10046447	C	T	c	Sox1_MA0870.1	20	0	+	0	0	.
chr6	39371237	39371238	chr6:39371238:G:A	rs115063005	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr6	39922522	39922523	chr6:39922523:A:C	rs2984659	A	C	A	Sox1_MA0870.1	18	0	-	0	0	.
chr6	40264245	40264246	chr6:40264246:G:C	rs114678891	G	C	G	Sox1_MA0870.1	24	0	-	0	0	.
chr6	40331811	40331812	chr6:40331812:C:T	rs12196317	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr6	40345699	40345700	chr6:40345700:A:G	rs930310652	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr6	40345716	40345717	chr6:40345717:A:T	rs2504824	A	T	T	Sox1_MA0870.1	13	1	-	6.18261671629689	2.8370906897077304	CACACTGACACTGTT
chr6	40396585	40396586	chr6:40396586:A:G	rs17619780	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr6	40715366	40715367	chr6:40715367:G:A	rs9462644	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	40806898	40806899	chr6:40806899:G:A	rs10947915	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr6	40861205	40861206	chr6:40861206:A:G	rs12196881	A	G	G	Sox1_MA0870.1	4	1	+	4.386385928304749	-2.3911923258654393	CACTATATCAGTGCG
chr6	40978886	40978887	chr6:40978887:A:G	rs9381016	A	G	G	Sox1_MA0870.1	16	0	-	0	0	.
chr6	41062486	41062487	chr6:41062487:C:T	rs2268190	C	T	T	Sox1_MA0870.1	2	1	+	5.477441937646443	-1.4313128416687775	AACAATTGCTGTGTG
chr6	41258520	41258521	chr6:41258521:C:T	rs4124010	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr6	41659009	41659010	chr6:41659010:G:T	rs9357365	G	T	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	41659030	41659031	chr6:41659031:G:C	rs78248170	G	C	G	Sox1_MA0870.1	13	1	+	7.271785965980731	8.736678395166809	AACAATAACAATGGT
chr6	41670962	41670963	chr6:41670963:T:C	rs6909657	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	41723284	41723285	chr6:41723285:C:T	rs73733004	C	T	C	Sox1_MA0870.1	2	1	+	4.429431971878198	-2.479322807437023	CCCAATGCCAGTGCA
chr6	41776237	41776238	chr6:41776238:G:C	rs66711509	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr6	42167176	42167177	chr6:42167177:G:T	rs57668268	G	T	G	Sox1_MA0870.1	25	0	-	0	0	.
chr6	42218566	42218567	chr6:42218567:C:T	rs7757788	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	42249361	42249362	chr6:42249362:C:A	rs58170583	C	A	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	42276672	42276673	chr6:42276673:T:C	rs34491635	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	42742345	42742346	chr6:42742346:G:A	rs61296601	G	A	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	42779584	42779585	chr6:42779585:C:T	rs146741325	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	43270829	43270830	chr6:43270830:C:A	rs117084418	C	A	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	43270831	43270832	chr6:43270832:A:G	rs2651186	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr6	43270870	43270871	chr6:43270871:C:T	rs2651187	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr6	43294965	43294966	chr6:43294966:A:T	rs16896398	A	T	A	Sox1_MA0870.1	18	0	-	0	0	.
chr6	43306873	43306874	chr6:43306874:C:T	rs191076667	C	T	C	Sox1_MA0870.1	13	1	+	4.040293898871438	6.217949196322433	CACAGTGTCATTGCC
chr6	43604407	43604408	chr6:43604408:A:G	rs6912884	A	G	G	Sox1_MA0870.1	4	1	+	8.69089186453725	1.9133136103670605	GACAAAACCAGTGTT
chr6	43783337	43783338	chr6:43783338:A:G	rs3025033	A	G	A	Sox1_MA0870.1	11	1	-	7.405913372100404	2.4505183862900695	CACAAGAACATTGCT
chr6	43946250	43946251	chr6:43946251:G:T	rs7764227	G	T	T	Sox1_MA0870.1	2	1	-	5.4643538259915925	-1.4444009533236248	GACCATCTCATTGTT
chr6	44109931	44109932	chr6:44109932:T:C	rs4714745	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr6	44386588	44386589	chr6:44386589:C:T	rs141867913	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr6	44431439	44431440	chr6:44431440:A:G	rs116230878	A	G	A	Sox1_MA0870.1	5	1	-	6.527332330897529	-0.3758324277502313	CACAATTACACTGCT
chr6	44431451	44431452	chr6:44431452:T:G	rs564990	T	G	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr6	44431452	44431453	chr6:44431453:A:G	rs564988	A	G	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	44522376	44522377	chr6:44522377:C:T	rs4432970	C	T	c	Sox1_MA0870.1	14	1	-	3.230187891108475	3.054856654041431	CACACCACCAGTGTG
chr6	44531669	44531670	chr6:44531670:A:G	rs12209212	A	G	G	Sox1_MA0870.1	10	1	-	3.4811649885893554	-3.327532095546977	CACACTGCCATGGCT
chr6	44541715	44541716	chr6:44541716:G:A	rs6918083	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	44607558	44607559	chr6:44607559:T:C	rs73737027	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr6	44619225	44619226	chr6:44619226:C:T	rs57743756	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr6	44628315	44628316	chr6:44628316:T:G	rs497177	T	G	G	Sox1_MA0870.1	10	1	+	6.722292931784983	4.481168003221423	GACATTTGCATTGTC
chr6	45224284	45224285	chr6:45224285:T:A	rs17288250	T	A	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	45314373	45314374	chr6:45314374:G:T	rs12191751	G	T	G	Sox1_MA0870.1	8	1	+	12.168814760962633	11.757708207225688	GACAATATGATTGTT
chr6	45326662	45326663	chr6:45326663:T:A	rs12201555	T	A	T	Sox1_MA0870.1	11	1	+	4.169879730503536	-2.732852956353296	TACCCTACCAGTGTA
chr6	45428051	45428052	chr6:45428052:A:C	rs2819860	A	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr6	45428054	45428055	chr6:45428055:A:C	rs2677105	A	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr6	45445688	45445689	chr6:45445689:G:A	rs114192438	G	A	G	Sox1_MA0870.1	1	1	+	6.9285891281805405	11.026879783573682	AGCAATTTGATTGTC
chr6	45577336	45577337	chr6:45577337:C:T	rs3899143	C	T	.	Sox1_MA0870.1	2	1	+	3.455956668988765	-3.452798110326456	CCCAGTTACATTGTC
chr6	45608257	45608258	chr6:45608258:G:T	rs35748889	G	T	G	Sox1_MA0870.1	34	0	-	0	0	.
chr6	45880346	45880347	chr6:45880347:T:C	rs1025414408	T	C	T	Sox1_MA0870.1	9	1	-	5.211807618624049	-1.696947160691172	ATCAACACCATTGTA
chr6	45947193	45947194	chr6:45947194:T:C	rs11757345	T	C	C	Sox1_MA0870.1	20	0	+	0	0	.
chr6	46184269	46184270	chr6:46184270:G:A	rs113057435	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	46184312	46184313	chr6:46184313:A:G	rs16874358	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr6	46220016	46220017	chr6:46220017:A:T	rs2799355	A	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr6	46350830	46350831	chr6:46350831:T:C	rs11963889	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr6	46653675	46653676	chr6:46653676:A:C	rs199817388	A	C	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	46893744	46893745	chr6:46893745:C:T	rs141734163	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr6	46921546	46921547	chr6:46921547:G:A	rs17385889	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	46964045	46964046	chr6:46964046:T:C	rs9472935	T	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr6	46969930	46969931	chr6:46969931:A:G	rs6942339	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	47147213	47147214	chr6:47147214:C:T	rs7748496	C	T	C	Sox1_MA0870.1	7	1	+	3.927116105863858	3.9152870533154847	CACACTGCCATTTTG
chr6	47153185	47153186	chr6:47153186:A:G	rs115423236	A	G	A	Sox1_MA0870.1	13	1	+	7.314858755535484	7.01783705548757	AACAATTGTATTGAC
chr6	47157250	47157251	chr6:47157251:G:A	rs7774223	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr6	47169229	47169230	chr6:47169230:C:T	rs6458546	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr6	47437653	47437654	chr6:47437654:A:C	rs62410670	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	47519221	47519222	chr6:47519222:A:G	rs1385741	A	G	A	Sox1_MA0870.1	1	1	+	4.588020134902286	0.4897294795091459	GAAAATGACATTGAT
chr6	47604193	47604194	chr6:47604194:G:A	rs190321061	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr6	47679484	47679485	chr6:47679485:C:T	rs10948374	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr6	47743988	47743989	chr6:47743989:A:C	rs9473167	A	C	A	Sox1_MA0870.1	13	1	-	7.691806458928861	4.049258732291788	AACAATTCCATAGTG
chr6	47854181	47854182	chr6:47854182:C:T	rs77285320	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	48388892	48388893	chr6:48388893:C:T	rs12209582	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	48611413	48611414	chr6:48611414:G:A	rs1573203	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	48614039	48614040	chr6:48614040:T:C	rs3010531	T	C	T	Sox1_MA0870.1	13	1	+	3.910837959013779	1.7331826615627852	CTCACTCTCATTGTC
chr6	48706979	48706980	chr6:48706980:G:A	rs10484857	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr6	49529598	49529599	chr6:49529599:G:A	rs73431936	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr6	49532315	49532316	chr6:49532316:A:G	rs113403851	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr6	49563719	49563720	chr6:49563720:G:C	rs12195674	G	C	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	50159687	50159688	chr6:50159688:T:C	rs10948548	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr6	50234237	50234238	chr6:50234238:T:C	rs12528705	T	C	T	Sox1_MA0870.1	10	1	+	5.741380303161562	-1.0673167809747715	CACAATGGCATTTTA
chr6	50355138	50355139	chr6:50355139:T:G	rs9349536	T	G	G	Sox1_MA0870.1	13	1	+	8.009834258296262	4.36728653165919	ACCTATACCATTGTT
chr6	50714597	50714598	chr6:50714598:T:C	rs78460443	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr6	50979398	50979399	chr6:50979399:A:G	rs113440632	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	51323302	51323303	chr6:51323303:C:T	rs13197867	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	51352839	51352840	chr6:51352840:G:A	rs6916171	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	51352843	51352844	chr6:51352844:A:G	rs6915726	A	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	51541971	51541972	chr6:51541972:G:C	chr6:51541972:G:C	G	C	G	Sox1_MA0870.1	12	1	+	6.437019170877101	-0.4717356084381198	TTCACTGGCATTGCT
chr6	51800798	51800799	chr6:51800799:T:C	rs1326570	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr6	51812284	51812285	chr6:51812285:T:G	rs6929552	T	G	T	Sox1_MA0870.1	20	0	+	0	0	.
chr6	52156327	52156328	chr6:52156328:A:G	rs764530160	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	52310470	52310471	chr6:52310471:T:C	rs73441794	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr6	52338070	52338071	chr6:52338071:C:T	rs74542499	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr6	52376274	52376275	chr6:52376275:G:A	rs73740362	G	A	G	Sox1_MA0870.1	14	1	+	6.767488410796588	6.592157173729544	ACCAAAATCATTGTG
chr6	52407627	52407628	chr6:52407628:C:T	rs116301436	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	52407638	52407639	chr6:52407639:G:A	rs140250304	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr6	52475377	52475378	chr6:52475378:T:C	rs9474227	T	C	T	Sox1_MA0870.1	9	1	-	5.592143952523081	-1.3166108267921406	AACACATCCAGTGTC
chr6	52660891	52660892	chr6:52660892:A:C	rs9474285	A	C	A	Sox1_MA0870.1	26	0	+	0	0	.
chr6	52915706	52915707	chr6:52915707:C:A	rs687509	C	A	c	Sox1_MA0870.1	-16	0	+	0	0	.
chr6	53042486	53042487	chr6:53042487:G:A	rs115214880	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr6	53113254	53113255	chr6:53113255:G:A	rs75128058	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	53202389	53202390	chr6:53202390:A:T	rs2816379	A	T	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	53394972	53394973	chr6:53394973:A:C	rs77479938	A	C	A	Sox1_MA0870.1	1	1	+	4.78995886200755	1.0208184771630524	TAAAATAGCATTGCC
chr6	53462182	53462183	chr6:53462183:T:C	rs7758711	T	C	T	Sox1_MA0870.1	10	1	+	4.051401751951394	-2.75729533218494	AACGATTCCATTGGG
chr6	53679321	53679322	chr6:53679322:C:G	rs11964937	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr6	53989394	53989395	chr6:53989395:G:A	rs55680514	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr6	54580355	54580356	chr6:54580356:G:A	rs9367586	G	A	A	Sox1_MA0870.1	10	1	+	4.044008230133232	-0.5235639254395411	CCCACTAGCAGTGCA
chr6	55492283	55492284	chr6:55492284:G:T	rs9296785	G	T	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	55674661	55674662	chr6:55674662:G:A	rs79131328	G	A	G	Sox1_MA0870.1	18	0	-	0	0	.
chr6	55678545	55678546	chr6:55678546:T:C	rs9357872	T	C	C	Sox1_MA0870.1	4	1	-	5.455526258082779	-1.3220519960874078	CTCAATATCAGTGAG
chr6	55764312	55764313	chr6:55764313:C:T	rs7745479	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	55851361	55851362	chr6:55851362:C:T	rs3823038	C	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	55877978	55877979	chr6:55877979:G:C	rs10485078	G	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	55898710	55898711	chr6:55898711:C:T	rs2397194	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	56220450	56220451	chr6:56220451:T:G	rs9382595	T	G	T	Sox1_MA0870.1	20	0	+	0	0	.
chr6	56239784	56239785	chr6:56239785:T:A	rs12209422	T	A	T	Sox1_MA0870.1	15	0	-	0	0	.
chr6	56293291	56293292	chr6:56293292:C:G	rs9475656	C	G	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	56329183	56329184	chr6:56329184:A:G	rs9382619	A	G	A	Sox1_MA0870.1	12	1	+	5.138588935568146	12.047343714883366	ATCACTATCATTATT
chr6	56438872	56438873	chr6:56438873:A:G	rs139468988	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	56491225	56491226	chr6:56491226:C:T	rs78801074	C	T	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	56593011	56593012	chr6:56593012:G:C	rs56024486	G	C	G	Sox1_MA0870.1	23	0	+	0	0	.
chr6	56656161	56656162	chr6:56656162:G:A	rs28633631	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	56737529	56737530	chr6:56737530:T:C	rs4275049	T	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr6	56816665	56816666	chr6:56816666:G:A	rs78421949	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr6	58059551	58059552	chr6:58059552:G:A	rs4928437	G	A	g	Sox1_MA0870.1	16	0	+	0	0	.
chr6	58366110	58366111	chr6:58366111:A:G	rs10458030	A	G	A	Sox1_MA0870.1	10	1	-	5.169456248522015	-1.639240835614319	TGCAATTACATTGGA
chr6	60737464	60737465	chr6:60737465:G:A	rs185829160	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr6	61556300	61556301	chr6:61556301:G:T	chr6:61556301:G:T	G	T	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	61717542	61717543	chr6:61717543:T:C	rs7766165	T	C	T	Sox1_MA0870.1	3	1	+	5.3984258857662795	5.826956266805439	GACTATAGCATTGAG
chr6	61842624	61842625	chr6:61842625:T:C	rs56229006	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr6	62091009	62091010	chr6:62091010:C:G	rs208975	C	G	C	Sox1_MA0870.1	10	1	-	7.992409994595393	3.424837839022619	CCCAATTACAGTGTC
chr6	62541290	62541291	chr6:62541291:C:T	rs2345983	C	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr6	62611989	62611990	chr6:62611990:A:G	rs11757197	A	G	A	Sox1_MA0870.1	7	1	-	4.381123325646695	4.392952378195068	AGCCATGTCATTGCT
chr6	62640989	62640990	chr6:62640990:G:A	rs55865929	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr6	63078082	63078083	chr6:63078083:T:C	rs789948	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	63492713	63492714	chr6:63492714:C:T	rs2758225	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	63806100	63806101	chr6:63806101:T:C	rs188089894	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	63806134	63806135	chr6:63806135:T:G	rs191508648	T	G	T	Sox1_MA0870.1	26	0	+	0	0	.
chr6	63963515	63963516	chr6:63963516:G:A	rs9362319	G	A	G	Sox1_MA0870.1	0	1	+	5.358912536243944	6.7010356790506975	GAAAATGGCATTGCT
chr6	64325020	64325021	chr6:64325021:C:T	rs647367	C	T	T	Sox1_MA0870.1	10	1	-	5.2813274276028075	0.7137552720300347	GGCAATTTCAGTGAT
chr6	64325045	64325046	chr6:64325046:G:C	rs647342	G	C	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	64385303	64385304	chr6:64385304:G:C	rs585253	G	C	N	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	65448782	65448783	chr6:65448783:T:A	rs12200840	T	A	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	65730252	65730253	chr6:65730253:T:C	rs72887832	T	C	T	Sox1_MA0870.1	5	1	+	4.493597329091475	-2.4095674295562817	ACCATTATCAGTGTT
chr6	65896541	65896542	chr6:65896542:T:C	rs4421177	T	C	T	Sox1_MA0870.1	11	1	+	4.129087808037361	-0.8263071777729728	CACAAAACCATTTTT
chr6	65903058	65903059	chr6:65903059:T:C	rs1392146	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	66081295	66081296	chr6:66081296:G:T	rs3912417	G	T	g	Sox1_MA0870.1	2	1	+	5.560762238571845	5.560762238571845	AAGAATAGCATTGAC
chr6	66435630	66435631	chr6:66435631:C:T	rs1606531	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	66638526	66638527	chr6:66638527:C:T	rs1026389	C	T	T	Sox1_MA0870.1	16	0	-	0	0	.
chr6	67220253	67220254	chr6:67220254:A:G	rs6455225	A	G	A	Sox1_MA0870.1	4	1	+	5.291326526092045	-1.4862517280781424	CCCAATTTGAGTGTT
chr6	67393245	67393246	chr6:67393246:G:A	rs1374556	G	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	67542864	67542865	chr6:67542865:G:T	rs2374175	G	T	G	Sox1_MA0870.1	1	1	-	5.642326069344076	9.411466454188576	ACCAATTCCATTTTT
chr6	67723258	67723259	chr6:67723259:T:C	rs73460669	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr6	68054654	68054655	chr6:68054655:A:G	rs12196925	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr6	68436906	68436907	chr6:68436907:C:T	rs62417070	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr6	68616101	68616102	chr6:68616102:G:A	rs76217514	G	A	G	Sox1_MA0870.1	7	1	+	5.3589125362439445	5.755890864040452	GACAATGGCATTTCT
chr6	68634576	68634577	chr6:68634577:T:C	rs530316276	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr6	68826689	68826690	chr6:68826690:T:C	rs62418566	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr6	68858840	68858841	chr6:68858841:G:T	rs518704	G	T	T	Sox1_MA0870.1	12	1	+	12.274139935907563	5.3653851565923425	AACAAAACCATTGTT
chr6	69028139	69028140	chr6:69028140:T:C	rs1283903	T	C	T	Sox1_MA0870.1	4	1	-	7.673955313922098	0.8963770597519097	AACAATTTCATTCTG
chr6	69139510	69139511	chr6:69139511:C:T	rs9360377	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr6	69570724	69570725	chr6:69570725:C:A	rs6914524	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	69747131	69747132	chr6:69747132:A:C	rs6918407	A	C	c	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	69815088	69815089	chr6:69815089:T:C	rs78323479	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr6	70119590	70119591	chr6:70119591:G:A	rs77297861	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr6	70119623	70119624	chr6:70119624:A:G	rs6455355	A	G	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	70125106	70125107	chr6:70125107:A:G	rs2093374	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr6	70230842	70230843	chr6:70230843:G:A	rs4342384	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr6	70293065	70293066	chr6:70293066:A:G	rs3793075	A	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr6	70380393	70380394	chr6:70380394:T:C	rs7748194	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr6	70688498	70688499	chr6:70688499:T:G	rs781967	T	G	T	Sox1_MA0870.1	20	0	-	0	0	.
chr6	71291162	71291163	chr6:71291163:G:T	rs9360445	G	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr6	71444628	71444629	chr6:71444629:G:A	rs9360453	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	71461109	71461110	chr6:71461110:C:T	rs112124105	C	T	C	Sox1_MA0870.1	0	1	-	3.645959074545039	4.988082217351793	GAAACTGCCATTGTA
chr6	71461112	71461113	chr6:71461113:T:C	rs186224196	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	71531785	71531786	chr6:71531786:A:C	rs9342840	A	C	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	71886075	71886076	chr6:71886076:G:T	rs9358985	G	T	G	Sox1_MA0870.1	15	0	+	0	0	.
chr6	72489544	72489545	chr6:72489545:G:T	rs9351921	G	T	G	Sox1_MA0870.1	4	1	-	4.206435259533141	6.163248194158358	AACCCTTCCATTGAG
chr6	72640491	72640492	chr6:72640492:A:G	rs12196826	A	G	G	Sox1_MA0870.1	7	1	+	8.91885269332123	8.521874365524724	AACAACAACATTGTA
chr6	72676089	72676090	chr6:72676090:G:A	rs12210850	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	72731492	72731493	chr6:72731493:A:T	rs2179952	A	T	t	Sox1_MA0870.1	-7	0	-	0	0	.
chr6	72825448	72825449	chr6:72825449:T:C	rs77728020	T	C	T	Sox1_MA0870.1	20	0	+	0	0	.
chr6	72834776	72834777	chr6:72834777:G:A	rs6915355	G	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr6	72878510	72878511	chr6:72878511:G:A	rs62412473	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr6	73043789	73043790	chr6:73043790:G:A	rs12213933	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr6	73109205	73109206	chr6:73109206:T:A	rs9293920	T	A	T	Sox1_MA0870.1	18	0	-	0	0	.
chr6	73460228	73460229	chr6:73460229:G:T	rs3013728	G	T	G	Sox1_MA0870.1	19	0	+	0	0	.
chr6	73471898	73471899	chr6:73471899:C:T	rs903517	C	T	c	Sox1_MA0870.1	34	0	+	0	0	.
chr6	73944445	73944446	chr6:73944446:A:G	rs992281188	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr6	73944457	73944458	chr6:73944458:A:G	rs1403253588	A	G	A	Sox1_MA0870.1	13	1	-	4.167777834014798	1.9901225365638031	GGCAAATGCATTGTG
chr6	73944460	73944461	chr6:73944461:A:G	rs113171788	A	G	A	Sox1_MA0870.1	10	1	-	4.167777834014798	-2.6409192501215357	GGCAAATGCATTGTG
chr6	74072453	74072454	chr6:74072454:T:G	rs115135824	T	G	T	Sox1_MA0870.1	33	0	-	0	0	.
chr6	74574974	74574975	chr6:74574975:C:G	rs111643957	C	G	C	Sox1_MA0870.1	28	0	+	0	0	.
chr6	74971821	74971822	chr6:74971822:T:C	rs7754400	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr6	74991950	74991951	chr6:74991951:T:G	rs10943230	T	G	T	Sox1_MA0870.1	10	1	+	5.891688013930827	3.6505630853672657	GAGAATTCCATTGCT
chr6	75267121	75267122	chr6:75267122:G:A	rs240394	G	A	G	Sox1_MA0870.1	6	1	+	3.5002553745980025	5.03886206773872	CAGAATGGCAGTGTA
chr6	76217635	76217636	chr6:76217636:T:G	rs9343377	T	G	g	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	76366869	76366870	chr6:76366870:T:G	rs2505011	T	G	G	Sox1_MA0870.1	4	1	-	6.0230471999249655	4.066234265299748	CTCAAAATCATTGTG
chr6	76420449	76420450	chr6:76420450:A:G	rs991761	A	G	G	Sox1_MA0870.1	11	1	-	4.469767836258908	-0.48562714955142516	CTCACTTTCATTGGG
chr6	76792668	76792669	chr6:76792669:G:A	rs4708285	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr6	76802990	76802991	chr6:76802991:G:A	rs6906350	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr6	77017595	77017596	chr6:77017596:G:A	rs9343540	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr6	77559198	77559199	chr6:77559199:T:C	rs1343492	T	C	T	Sox1_MA0870.1	10	1	+	7.2626236596136735	0.4539265754773395	AACAATCACATTGAG
chr6	77681360	77681361	chr6:77681361:C:T	rs13197085	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	77889752	77889753	chr6:77889753:G:T	rs6911385	G	T	G	Sox1_MA0870.1	2	1	-	4.129087808037361	-2.7796669712778592	CACAAAACCATTTTT
chr6	78154047	78154048	chr6:78154048:T:G	rs73475056	T	G	T	Sox1_MA0870.1	15	0	-	0	0	.
chr6	78156180	78156181	chr6:78156181:G:C	rs9361376	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	78243528	78243529	chr6:78243529:G:A	rs6911371	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr6	78263483	78263484	chr6:78263484:A:G	rs818249	A	G	G	Sox1_MA0870.1	13	1	+	6.677488277105672	6.380466577057758	TTCAATTACATTGAC
chr6	78692195	78692196	chr6:78692196:C:A	rs531345734	C	A	C	Sox1_MA0870.1	16	0	-	0	0	.
chr6	78692733	78692734	chr6:78692734:T:C	rs10943567	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr6	79084774	79084775	chr6:79084775:G:T	rs7776432	G	T	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	79084775	79084776	chr6:79084776:C:T	rs7776138	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	79084804	79084805	chr6:79084805:T:C	rs146051006	T	C	T	Sox1_MA0870.1	11	1	+	3.5206290030212273	-1.4347659827891062	AACACTTGCAGTTTG
chr6	79421787	79421788	chr6:79421788:G:T	rs149562633	G	T	G	Sox1_MA0870.1	9	1	+	5.142759679753431	5.142759679753431	AACAATAAGGTTGTA
chr6	79438425	79438426	chr6:79438426:T:C	rs75865394	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr6	79750805	79750806	chr6:79750806:T:C	rs761605	T	C	C	Sox1_MA0870.1	15	0	-	0	0	.
chr6	79804208	79804209	chr6:79804209:A:T	rs9361561	A	T	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	79815470	79815471	chr6:79815471:G:A	rs114992634	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr6	79840298	79840299	chr6:79840299:T:C	rs58131569	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	79866201	79866202	chr6:79866202:G:A	rs4706105	G	A	g	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	79894710	79894711	chr6:79894711:C:A	rs16891209	C	A	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	80003181	80003182	chr6:80003182:A:G	rs73747936	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr6	80004136	80004137	chr6:80004137:G:A	rs574242499	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr6	80129534	80129535	chr6:80129535:G:T	rs2505932	G	T	t	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	80259384	80259385	chr6:80259385:A:T	rs669420	A	T	T	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	80383364	80383365	chr6:80383365:A:G	rs1436862	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr6	80517135	80517136	chr6:80517136:A:G	rs11969171	A	G	G	Sox1_MA0870.1	15	0	+	0	0	.
chr6	80557832	80557833	chr6:80557833:A:T	rs9449068	A	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr6	80872353	80872354	chr6:80872354:C:T	rs16892314	C	T	C	Sox1_MA0870.1	9	1	+	4.123039104271802	4.123039104271802	CTCAATAACCTTGCT
chr6	81417887	81417888	chr6:81417888:G:A	rs9449321	G	A	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	81459661	81459662	chr6:81459662:C:G	rs73749117	C	G	C	Sox1_MA0870.1	27	0	-	0	0	.
chr6	81714878	81714879	chr6:81714879:A:G	rs194898	A	G	A	Sox1_MA0870.1	10	1	-	11.665354563847417	4.8566574797110835	GACAATTGCATTGAT
chr6	81821868	81821869	chr6:81821869:C:T	rs733415	C	T	T	Sox1_MA0870.1	26	0	+	0	0	.
chr6	81845963	81845964	chr6:81845964:C:T	rs6926755	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr6	82066308	82066309	chr6:82066309:A:G	rs1984189	A	G	A	Sox1_MA0870.1	29	0	+	0	0	.
chr6	82568316	82568317	chr6:82568317:G:C	rs2917492	G	C	G	Sox1_MA0870.1	26	0	-	0	0	.
chr6	82738112	82738113	chr6:82738113:G:A	rs7773826	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	82877642	82877643	chr6:82877643:T:C	rs9361982	T	C	T	Sox1_MA0870.1	9	1	-	4.29686760135755	-2.611887177957669	CACAATGGCATTCAT
chr6	83265809	83265810	chr6:83265810:C:T	rs34326691	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	83461719	83461720	chr6:83461720:C:G	rs16885798	C	G	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr6	83479677	83479678	chr6:83479678:A:T	rs4707000	A	T	A	Sox1_MA0870.1	0	1	+	5.490600759092916	3.5519266533904554	ATCCATGCCATTGTA
chr6	83505015	83505016	chr6:83505016:T:G	rs1171106	T	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	84334200	84334201	chr6:84334201:A:G	rs9359585	A	G	A	Sox1_MA0870.1	13	1	-	7.0565074332074404	4.878852135756447	AACACTAACACTGTA
chr6	84360664	84360665	chr6:84360665:G:C	rs4504449	G	C	G	Sox1_MA0870.1	2	1	-	5.886760777140742	-1.021994002174479	AACATTTGCATTGCC
chr6	84448490	84448491	chr6:84448491:A:C	rs9449914	A	C	A	Sox1_MA0870.1	27	0	-	0	0	.
chr6	84479465	84479466	chr6:84479466:C:T	rs9353189	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr6	84505117	84505118	chr6:84505118:C:A	rs9341979	C	A	C	Sox1_MA0870.1	32	0	-	0	0	.
chr6	84617911	84617912	chr6:84617912:A:G	rs9444205	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr6	84977394	84977395	chr6:84977395:G:A	chr6:84977395:G:A	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr6	84977418	84977419	chr6:84977419:G:C	rs16875388	G	C	G	Sox1_MA0870.1	2	1	-	11.018546986095387	4.109792206780167	CACAATAGCATTGAG
chr6	85058985	85058986	chr6:85058986:C:T	rs9450135	C	T	T	Sox1_MA0870.1	8	1	-	4.663221334835709	2.5405546734178337	AACACTACGATAGTT
chr6	85059010	85059011	chr6:85059011:C:T	rs62420794	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr6	85059011	85059012	chr6:85059012:G:A	rs117600122	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	85278710	85278711	chr6:85278711:A:G	rs4053778	A	G	g	Sox1_MA0870.1	31	0	+	0	0	.
chr6	85489610	85489611	chr6:85489611:G:C	rs9450284	G	C	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	85495604	85495605	chr6:85495605:T:G	rs6922	T	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr6	85705517	85705518	chr6:85705518:T:C	rs2475787	T	C	C	Sox1_MA0870.1	4	1	-	3.490982299439891	-3.2865959547302976	CACCATGTCAGTGCC
chr6	85827435	85827436	chr6:85827436:A:G	rs3900313	A	G	t	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	85827526	85827527	chr6:85827527:G:A	rs539439664	G	A	g	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	85960495	85960496	chr6:85960496:G:A	rs10455455	G	A	g	Sox1_MA0870.1	21	0	+	0	0	.
chr6	86069365	86069366	chr6:86069366:C:A	rs1415749	C	A	C	Sox1_MA0870.1	7	1	-	3.8994879237056863	3.8548763714177805	CACAATAGGTTTGTC
chr6	86346958	86346959	chr6:86346959:C:T	rs58087474	C	T	C	Sox1_MA0870.1	2	1	+	4.129087808037361	-2.7796669712778592	CACAAAACCATTTTT
chr6	86581821	86581822	chr6:86581822:T:C	rs2020078	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	86764794	86764795	chr6:86764795:T:C	rs12526964	T	C	T	Sox1_MA0870.1	10	1	+	4.425734877934602	-2.382962206201731	AGCCATGGCATTGCT
chr6	87100022	87100023	chr6:87100023:T:A	rs981086	T	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	87685312	87685313	chr6:87685313:T:G	rs2787918	T	G	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	87832561	87832562	chr6:87832562:C:T	rs76691151	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr6	87851932	87851933	chr6:87851933:T:C	rs9351133	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	88179496	88179497	chr6:88179497:C:G	rs4707437	C	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr6	88276581	88276582	chr6:88276582:C:G	rs917400806	C	G	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	88698982	88698983	chr6:88698983:G:C	rs2756361	G	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr6	89080489	89080490	chr6:89080490:G:A	rs2231266	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	89285231	89285232	chr6:89285232:A:G	rs6454748	A	G	G	Sox1_MA0870.1	1	1	+	4.6285384930000655	0.5302478376069244	TACCCTGGCATTGCT
chr6	89285257	89285258	chr6:89285258:T:C	rs6454749	T	C	T	Sox1_MA0870.1	4	1	-	5.5081290690194775	-1.2694491851507115	AACAATTCCCTTGCG
chr6	89357995	89357996	chr6:89357996:T:C	rs1782	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	89613419	89613420	chr6:89613420:G:T	rs17735389	G	T	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	89680723	89680724	chr6:89680724:C:A	rs9353689	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr6	89985138	89985139	chr6:89985139:C:T	rs150182765	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	90074418	90074419	chr6:90074419:A:G	rs541090487	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr6	90079060	90079061	chr6:90079061:T:C	rs115781566	T	C	T	Sox1_MA0870.1	1	1	+	4.836321130586337	4.344464992902979	ATCAATGGGATTGCG
chr6	90355310	90355311	chr6:90355311:C:G	rs4706364	C	G	C	Sox1_MA0870.1	30	0	-	0	0	.
chr6	90432675	90432676	chr6:90432676:A:T	rs12194712	A	T	A	Sox1_MA0870.1	13	1	+	7.91132386988304	11.256849896472199	CTCAATATCATTGAC
chr6	90479398	90479399	chr6:90479399:C:T	rs150745969	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr6	90620156	90620157	chr6:90620157:C:T	rs12528032	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	90654722	90654723	chr6:90654723:C:T	rs1923066	C	T	C	Sox1_MA0870.1	0	1	+	6.00353590064099	5.30115914349351	CACAATTCCATGGCT
chr6	90761946	90761947	chr6:90761947:G:T	rs1919533	G	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	90835835	90835836	chr6:90835836:A:C	rs1528982	A	C	a	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	90894521	90894522	chr6:90894522:C:T	rs901015	C	T	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	90951114	90951115	chr6:90951115:C:T	rs9451543	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr6	91172263	91172264	chr6:91172264:G:C	rs4544882	G	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	91221356	91221357	chr6:91221357:C:T	rs9345115	C	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	91821296	91821297	chr6:91821297:C:T	rs6928787	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr6	91852803	91852804	chr6:91852804:C:T	rs2454267	C	T	T	Sox1_MA0870.1	22	0	-	0	0	.
chr6	92181593	92181594	chr6:92181594:A:G	rs950360	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	92275090	92275091	chr6:92275091:G:A	rs6925015	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr6	92362785	92362786	chr6:92362786:T:C	rs7769347	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	92623620	92623621	chr6:92623621:A:C	rs783610	A	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	93848143	93848144	chr6:93848144:T:G	rs115211323	T	G	T	Sox1_MA0870.1	19	0	-	0	0	.
chr6	94204075	94204076	chr6:94204076:G:C	rs112159673	G	C	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	94478295	94478296	chr6:94478296:G:T	rs9445284	G	T	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	95225629	95225630	chr6:95225630:T:A	rs36186602	T	A	A	Sox1_MA0870.1	32	0	-	0	0	.
chr6	95271579	95271580	chr6:95271580:G:T	rs36162534	G	T	G	Sox1_MA0870.1	34	0	-	0	0	.
chr6	95289008	95289009	chr6:95289009:T:C	rs985703627	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr6	95357216	95357217	chr6:95357217:C:T	rs36156302	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr6	95885721	95885722	chr6:95885722:C:T	rs2485195	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr6	96151466	96151467	chr6:96151467:A:G	rs4289659	A	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	96342277	96342278	chr6:96342278:C:T	rs12190042	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr6	96762270	96762271	chr6:96762271:G:A	rs2179540	G	A	G	Sox1_MA0870.1	0	1	-	5.092010254248852	4.3896334971013715	CACACAAACAGTGCT
chr6	97033449	97033450	chr6:97033450:C:T	rs1617057	C	T	c	Sox1_MA0870.1	17	0	+	0	0	.
chr6	97437162	97437163	chr6:97437163:A:G	rs1005463335	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr6	97657130	97657131	chr6:97657131:G:A	rs4397234	G	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	98626371	98626372	chr6:98626372:C:A	rs74670105	C	A	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr6	99119622	99119623	chr6:99119623:C:G	rs768728836	C	G	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr6	99119627	99119628	chr6:99119628:C:T	rs150820849	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	99516615	99516616	chr6:99516616:G:A	rs62432317	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr6	99751900	99751901	chr6:99751901:A:G	rs6902345	A	G	G	Sox1_MA0870.1	14	1	-	3.3793880104182894	1.8683786059368845	AACACTGGCACTGGT
chr6	100087926	100087927	chr6:100087927:T:A	rs2474261	T	A	a	Sox1_MA0870.1	34	0	+	0	0	.
chr6	100376371	100376372	chr6:100376372:T:G	rs1054013029	T	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	100376373	100376374	chr6:100376374:G:A	rs12202773	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	100454554	100454555	chr6:100454555:C:T	rs116676482	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr6	100488484	100488485	chr6:100488485:T:C	rs6570772	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr6	100684491	100684492	chr6:100684492:T:C	rs239195	T	C	T	Sox1_MA0870.1	1	1	-	4.318595723513688	0.2203050681205445	GACAATAACATTAGC
chr6	101114140	101114141	chr6:101114141:T:C	rs9498521	T	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr6	101183758	101183759	chr6:101183759:G:A	rs80194065	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	101428872	101428873	chr6:101428873:A:C	rs72957648	A	C	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	101730856	101730857	chr6:101730857:G:A	rs9322604	G	A	A	Sox1_MA0870.1	16	0	-	0	0	.
chr6	101798752	101798753	chr6:101798753:T:C	rs4839801	T	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr6	101911031	101911032	chr6:101911032:A:G	rs1475920	A	G	A	Sox1_MA0870.1	0	1	-	7.1540746856667745	7.8564514428142544	TACAAATGCAGTGTT
chr6	101993127	101993128	chr6:101993128:C:G	rs7771009	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr6	102327803	102327804	chr6:102327804:T:C	rs9377354	T	C	c	Sox1_MA0870.1	28	0	+	0	0	.
chr6	102603863	102603864	chr6:102603864:G:T	rs4320376	G	T	G	Sox1_MA0870.1	18	0	-	0	0	.
chr6	102603899	102603900	chr6:102603900:C:G	rs4594955	C	G	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	102900215	102900216	chr6:102900216:C:T	rs72982886	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	103649243	103649244	chr6:103649244:T:C	rs9654623	T	C	T	Sox1_MA0870.1	10	1	+	10.384515169902876	3.5758180857665423	AAAAATACCATTGTT
chr6	103763213	103763214	chr6:103763214:A:G	rs9499664	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr6	104809108	104809109	chr6:104809109:T:C	rs73768821	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr6	105032573	105032574	chr6:105032574:A:T	rs9500018	A	T	A	Sox1_MA0870.1	26	0	+	0	0	.
chr6	105113608	105113609	chr6:105113609:T:A	rs1981480	T	A	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	105137763	105137764	chr6:105137764:A:G	rs915623478	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	105158142	105158143	chr6:105158143:T:C	rs768781	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr6	105210474	105210475	chr6:105210475:C:T	rs67107125	C	T	C	Sox1_MA0870.1	7	1	+	4.024885800365791	4.0130567478174175	GTCACTGCCATTGGC
chr6	105210495	105210496	chr6:105210496:A:C	rs67836055	A	C	A	Sox1_MA0870.1	28	0	+	0	0	.
chr6	105272662	105272663	chr6:105272663:G:C	rs1772203	G	C	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr6	105436725	105436726	chr6:105436726:A:G	rs10440860	A	G	A	Sox1_MA0870.1	3	1	+	7.140013422481269	0.23942375528404491	ATCAATAGCATTTTT
chr6	105543155	105543156	chr6:105543156:G:A	rs4946672	G	A	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	105665268	105665269	chr6:105665269:G:A	rs13215959	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	105671981	105671982	chr6:105671982:A:G	rs56121626	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr6	105760089	105760090	chr6:105760090:T:C	rs72931525	T	C	T	Sox1_MA0870.1	11	1	+	5.909306094593751	0.9539111087834159	CTCAAGAGCATTGTT
chr6	105804540	105804541	chr6:105804541:G:A	rs1876556	G	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr6	105886833	105886834	chr6:105886834:T:C	rs6931636	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	106056851	106056852	chr6:106056852:C:T	rs4576290	C	T	C	Sox1_MA0870.1	12	1	-	5.931329275007325	-0.9774255043078958	AACACAAGCAGTGCT
chr6	106116360	106116361	chr6:106116361:A:G	rs533733	A	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr6	106319037	106319038	chr6:106319038:A:C	rs1769978	A	C	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	106319060	106319061	chr6:106319061:A:G	rs662114	A	G	G	Sox1_MA0870.1	14	1	+	6.881890488221413	7.057221725288457	ACCACTTACAGTGTA
chr6	106445417	106445418	chr6:106445418:T:C	rs927014	T	C	T	Sox1_MA0870.1	4	1	-	5.298750244864701	-1.4788280093054862	AACCATACCATTTTT
chr6	106509244	106509245	chr6:106509245:G:T	rs1417356	G	T	G	Sox1_MA0870.1	16	0	-	0	0	.
chr6	106746920	106746921	chr6:106746921:G:C	rs539290940	G	C	G	Sox1_MA0870.1	1	1	-	5.762878009106899	5.433727738558257	CCCAAAGGCATTGTT
chr6	107214476	107214477	chr6:107214477:A:T	chr6:107214477:A:T	A	T	A	Sox1_MA0870.1	19	0	+	0	0	.
chr6	107230173	107230174	chr6:107230174:G:T	rs9372156	G	T	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	107241802	107241803	chr6:107241803:T:C	rs12528138	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr6	107439666	107439667	chr6:107439667:T:C	rs319075	T	C	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	107439691	107439692	chr6:107439692:G:A	rs319076	G	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr6	107540725	107540726	chr6:107540726:G:A	rs79596750	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	107571839	107571840	chr6:107571840:A:G	rs4513841	A	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr6	107641265	107641266	chr6:107641266:C:T	rs72945685	C	T	C	Sox1_MA0870.1	0	1	+	5.750281486205282	5.047904729057802	CTCAATAAGATTGCC
chr6	107689370	107689371	chr6:107689371:T:C	rs9372165	T	C	C	Sox1_MA0870.1	33	0	-	0	0	.
chr6	107708540	107708541	chr6:107708541:A:C	rs7742875	A	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr6	107708557	107708558	chr6:107708558:G:C	rs2463451	G	C	C	Sox1_MA0870.1	2	1	-	4.525456583029808	-2.383298196285413	CACACTTGCATTCTG
chr6	107807620	107807621	chr6:107807621:A:G	rs74943503	A	G	A	Sox1_MA0870.1	11	1	-	14.479894309162237	9.524499323351904	GACAATAACATTGTA
chr6	108068073	108068074	chr6:108068074:G:C	rs9400194	G	C	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	108105748	108105749	chr6:108105749:C:T	rs78644798	C	T	T	Sox1_MA0870.1	13	1	+	5.75558425199571	7.933239549446704	AAAAATTGCATTGCC
chr6	108133232	108133233	chr6:108133233:A:G	rs218289	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr6	108591997	108591998	chr6:108591998:T:C	rs13220810	T	C	T	Sox1_MA0870.1	10	1	+	6.358811285757607	-0.44988579837872666	GTCAAAAACATTGTG
chr6	108729174	108729175	chr6:108729175:G:T	rs9486940	G	T	g	Sox1_MA0870.1	12	1	+	7.140013422481269	0.23125864316604916	ATTAATAGCATTGTT
chr6	108835305	108835306	chr6:108835306:C:T	rs75037346	C	T	C	Sox1_MA0870.1	1	1	-	5.444352323940466	9.542642979333607	AGCATTTCCATTGTT
chr6	109015413	109015414	chr6:109015414:A:G	rs117412830	A	G	A	Sox1_MA0870.1	11	1	-	3.7172453320294436	-1.238149653780891	GACACAGGCAGTGTC
chr6	109059904	109059905	chr6:109059905:A:G	rs565800876	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr6	109059936	109059937	chr6:109059937:A:G	rs79723641	A	G	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	109202617	109202618	chr6:109202618:C:T	rs352834	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr6	109793399	109793400	chr6:109793400:T:G	rs115069576	T	G	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	109867923	109867924	chr6:109867924:T:G	rs62437601	T	G	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	109867945	109867946	chr6:109867946:A:G	rs9487241	A	G	G	Sox1_MA0870.1	3	1	+	6.673653602077268	-0.22693606511995779	TTCAATTTCAGTGCT
chr6	110021556	110021557	chr6:110021557:A:G	rs7763290	A	G	G	Sox1_MA0870.1	1	1	-	10.801812057779095	10.309955920095737	ATCAATTCCAGTGTT
chr6	110391216	110391217	chr6:110391217:A:G	rs6902281	A	G	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	110513078	110513079	chr6:110513079:G:C	rs11153242	G	C	G	Sox1_MA0870.1	32	0	+	0	0	.
chr6	110813816	110813817	chr6:110813817:C:G	rs9487533	C	G	C	Sox1_MA0870.1	30	0	-	0	0	.
chr6	110876579	110876580	chr6:110876580:A:G	rs1028207658	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr6	110876595	110876596	chr6:110876596:G:A	rs12212810	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr6	111416672	111416673	chr6:111416673:C:T	rs185237952	C	T	C	Sox1_MA0870.1	8	1	+	8.449096176236733	4.267486629599449	AACACAAGCATTGTA
chr6	111485148	111485149	chr6:111485149:G:A	rs17510346	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr6	111645327	111645328	chr6:111645328:C:G	rs7763331	C	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr6	111654515	111654516	chr6:111654516:G:A	rs916378	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr6	111718563	111718564	chr6:111718564:G:T	rs9374281	G	T	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	111747873	111747874	chr6:111747874:C:T	rs12525113	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr6	111810435	111810436	chr6:111810436:C:T	rs1244477954	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	111810444	111810445	chr6:111810445:T:C	rs9481193	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr6	111830771	111830772	chr6:111830772:T:A	rs9487729	T	A	A	Sox1_MA0870.1	34	0	-	0	0	.
chr6	111852875	111852876	chr6:111852876:T:C	rs111655883	T	C	T	Sox1_MA0870.1	1	1	-	4.478436443170769	0.38014578777762964	CACTATGACATCGTT
chr6	111909074	111909075	chr6:111909075:C:T	rs9487745	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	112087908	112087909	chr6:112087909:T:C	rs149880190	T	C	T	Sox1_MA0870.1	9	1	-	4.337916901713498	-2.5708378776017224	CTCAACGCCATTGTT
chr6	112214880	112214881	chr6:112214881:A:G	rs189545465	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	112216772	112216773	chr6:112216773:T:C	rs57283028	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr6	112216812	112216813	chr6:112216813:C:T	rs191420018	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	112217847	112217848	chr6:112217848:A:G	rs2237249	A	G	G	Sox1_MA0870.1	1	1	+	6.57492308418569	2.476632428792547	GACACTAAGATTGCA
chr6	112750281	112750282	chr6:112750282:A:G	rs9387097	A	G	A	Sox1_MA0870.1	4	1	+	5.745555124973636	-1.0320231291965518	GCCAATTGGATTGTG
chr6	112880567	112880568	chr6:112880568:A:C	rs6905481	A	C	A	Sox1_MA0870.1	4	1	+	4.245309181647539	2.288496247022322	CTCAATACCACTGTG
chr6	112882216	112882217	chr6:112882217:C:A	rs78031581	C	A	C	Sox1_MA0870.1	2	1	+	4.98129766939356	-1.9274571099216615	AACAAATCCAGTGCA
chr6	113293618	113293619	chr6:113293619:A:T	rs771457606	A	T	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	113306773	113306774	chr6:113306774:T:A	rs1029577053	T	A	T	Sox1_MA0870.1	18	0	-	0	0	.
chr6	113311970	113311971	chr6:113311971:A:C	rs10440868	A	C	C	Sox1_MA0870.1	20	0	+	0	0	.
chr6	113444163	113444164	chr6:113444164:C:T	rs11153417	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr6	113450071	113450072	chr6:113450072:A:G	rs9320456	A	G	A	Sox1_MA0870.1	5	1	-	12.110094096094029	5.206929337446271	TTCAATAGCATTGTT
chr6	113460993	113460994	chr6:113460994:C:T	chr6:113460994:C:T	C	T	C	Sox1_MA0870.1	8	1	+	4.735459687791728	0.5538501411544463	CACAATACCAGGGCT
chr6	113461014	113461015	chr6:113461015:A:C	rs9384868	A	C	A	Sox1_MA0870.1	29	0	+	0	0	.
chr6	113611589	113611590	chr6:113611590:C:T	rs75121165	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr6	113611607	113611608	chr6:113611608:C:T	chr6:113611608:C:T	C	T	C	Sox1_MA0870.1	7	1	-	5.4012686993831505	5.798247027179658	CAGAATGGCAGTGTT
chr6	113764093	113764094	chr6:113764094:T:C	rs550746686	T	C	T	Sox1_MA0870.1	3	1	-	5.825076440506054	-1.07551322669117	TTCACTTACAGTGTC
chr6	113776890	113776891	chr6:113776891:T:C	rs9481398	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	113995831	113995832	chr6:113995832:A:G	rs976102915	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	114007859	114007860	chr6:114007860:A:G	rs6568825	A	G	G	Sox1_MA0870.1	22	0	-	0	0	.
chr6	114024883	114024884	chr6:114024884:G:T	rs61464163	G	T	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr6	114042721	114042722	chr6:114042722:T:C	rs12204963	T	C	C	Sox1_MA0870.1	9	1	-	3.8655984881030596	-3.0431562912121604	GACACTTTCAGGGTT
chr6	114181643	114181644	chr6:114181644:A:G	rs9481426	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr6	114328674	114328675	chr6:114328675:C:T	rs12216474	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr6	114334534	114334535	chr6:114334535:T:C	rs785137	T	C	C	Sox1_MA0870.1	3	1	-	3.5814081064340044	-3.319181560763221	AACAAGACCACTGTT
chr6	114514411	114514412	chr6:114514412:A:C	rs558520405	A	C	A	Sox1_MA0870.1	7	1	-	5.829399177005932	5.874010729293838	GGCAATATGAGTGTT
chr6	114793717	114793718	chr6:114793718:G:C	rs4295513	G	C	G	Sox1_MA0870.1	22	0	-	0	0	.
chr6	115293438	115293439	chr6:115293439:G:T	rs12196309	G	T	G	Sox1_MA0870.1	28	0	+	0	0	.
chr6	115483761	115483762	chr6:115483762:T:C	rs11153568	T	C	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr6	115733807	115733808	chr6:115733808:A:C	rs4946116	A	C	A	Sox1_MA0870.1	31	0	-	0	0	.
chr6	116511534	116511535	chr6:116511535:G:T	chr6:116511535:G:T	G	T	G	Sox1_MA0870.1	30	0	-	0	0	.
chr6	116948886	116948887	chr6:116948887:T:C	rs1334659	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	116950145	116950146	chr6:116950146:G:T	rs17175	G	T	T	Sox1_MA0870.1	20	0	+	0	0	.
chr6	117127863	117127864	chr6:117127864:C:A	rs783372	C	A	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	117974927	117974928	chr6:117974928:A:G	rs75706782	A	G	A	Sox1_MA0870.1	9	1	+	5.586422694517744	-1.3223320847974767	AAAACTTGCATTGTA
chr6	118558422	118558423	chr6:118558423:G:T	rs1288839	G	T	G	Sox1_MA0870.1	8	1	-	5.3653851565923425	-0.5277844977258709	AACAAAACCATTTTT
chr6	118708918	118708919	chr6:118708919:A:C	rs560754934	A	C	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	118762740	118762741	chr6:118762741:G:A	rs62424027	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	118764914	118764915	chr6:118764915:C:T	rs574822436	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	118893359	118893360	chr6:118893360:A:G	rs147109562	A	G	a	Sox1_MA0870.1	0	1	+	5.943644115081954	4.6015209722752015	AACACTTCCATTTTC
chr6	118893373	118893374	chr6:118893374:C:T	rs148150280	C	T	C	Sox1_MA0870.1	14	1	+	5.943644115081954	7.454653519563358	AACACTTCCATTTTC
chr6	119258443	119258444	chr6:119258444:T:C	rs2299879	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr6	119447097	119447098	chr6:119447098:C:T	rs12208590	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr6	120021052	120021053	chr6:120021053:T:C	rs6933285	T	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	120021094	120021095	chr6:120021095:G:T	rs6569098	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr6	120097106	120097107	chr6:120097107:T:C	rs1359016	T	C	C	Sox1_MA0870.1	11	1	+	5.440704065614582	0.48530907980424776	AACAAATGAATTGTT
chr6	120229991	120229992	chr6:120229992:C:T	rs77273437	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr6	120277953	120277954	chr6:120277954:T:C	rs12216323	T	C	T	Sox1_MA0870.1	4	1	-	8.369048040189195	1.5914697860190063	TACTATAACATTGTA
chr6	120805335	120805336	chr6:120805336:C:T	rs2789074	C	T	T	Sox1_MA0870.1	4	1	+	4.607130099938259	-0.21363521960671472	ATTACTTACATTGTT
chr6	121043827	121043828	chr6:121043828:C:T	rs764613207	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	121043828	121043829	chr6:121043829:A:C	rs751542143	A	C	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	121114923	121114924	chr6:121114924:A:G	rs13199297	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr6	121383262	121383263	chr6:121383263:G:C	rs9490226	G	C	g	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	121442816	121442817	chr6:121442817:C:G	rs12197797	C	G	C	Sox1_MA0870.1	22	0	-	0	0	.
chr6	121482188	121482189	chr6:121482189:C:T	rs113594998	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr6	121488303	121488304	chr6:121488304:G:A	rs4946572	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr6	121492688	121492689	chr6:121492689:A:G	rs76785130	A	G	A	Sox1_MA0870.1	15	0	+	0	0	.
chr6	121523204	121523205	chr6:121523205:C:A	rs4143301	C	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	121523228	121523229	chr6:121523229:G:A	rs115147666	G	A	G	Sox1_MA0870.1	6	1	+	4.141629817690729	5.680236510831447	ATCACTGACACTGTT
chr6	121563305	121563306	chr6:121563306:A:G	rs117230201	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr6	121826578	121826579	chr6:121826579:G:A	rs9401454	G	A	G	Sox1_MA0870.1	2	1	-	4.263175748009739	-2.6455790313054806	CTCACTTCCAGTGAT
chr6	122056118	122056119	chr6:122056119:G:A	rs9320853	G	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr6	122129955	122129956	chr6:122129956:C:A	rs80105958	C	A	C	Sox1_MA0870.1	7	1	+	4.656070840256674	5.085831667792716	GGCAAAACCATTGCT
chr6	122196550	122196551	chr6:122196551:A:G	rs9401497	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	122654812	122654813	chr6:122654813:A:G	rs12205720	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr6	122714292	122714293	chr6:122714293:G:A	rs9398693	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr6	122744535	122744536	chr6:122744536:C:T	chr6:122744536:C:T	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr6	122803358	122803359	chr6:122803359:A:G	rs6936183	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr6	122803386	122803387	chr6:122803387:G:A	rs6936666	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr6	122956603	122956604	chr6:122956604:A:C	rs7773412	A	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	123763892	123763893	chr6:123763893:G:A	rs9490922	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr6	123869742	123869743	chr6:123869743:A:G	rs6924068	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr6	123874074	123874075	chr6:123874075:A:C	rs9388286	A	C	A	Sox1_MA0870.1	4	1	+	4.600354323784591	2.6435413891593744	GCCCATTTCATTGTC
chr6	123925331	123925332	chr6:123925332:G:A	rs145972159	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	124008530	124008531	chr6:124008531:T:C	rs1022105	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr6	124028238	124028239	chr6:124028239:G:T	rs17086515	G	T	T	Sox1_MA0870.1	8	1	-	10.814275997438918	4.9211063431207025	AAAAATAACATTGTT
chr6	124235014	124235015	chr6:124235015:G:A	rs802309	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr6	124291574	124291575	chr6:124291575:T:G	rs2753150	T	G	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	124310309	124310310	chr6:124310310:T:C	rs932600	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr6	124371408	124371409	chr6:124371409:G:A	rs2208814	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr6	124371820	124371821	chr6:124371821:C:T	rs11751246	C	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	124389345	124389346	chr6:124389346:T:C	rs17051780	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr6	124416953	124416954	chr6:124416954:A:C	rs487242	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	124666092	124666093	chr6:124666093:G:A	rs972895	G	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr6	124823682	124823683	chr6:124823683:A:C	rs192027726	A	C	A	Sox1_MA0870.1	15	0	-	0	0	.
chr6	124823707	124823708	chr6:124823708:G:A	rs41285244	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	125220575	125220576	chr6:125220576:A:T	rs1557053	A	T	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	125558589	125558590	chr6:125558590:G:A	rs147222768	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	125558597	125558598	chr6:125558598:G:A	rs116423307	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	125950724	125950725	chr6:125950725:C:T	rs9491549	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr6	126188531	126188532	chr6:126188532:A:G	rs9491575	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	126228171	126228172	chr6:126228172:G:C	rs150386077	G	C	G	Sox1_MA0870.1	20	0	-	0	0	.
chr6	126645161	126645162	chr6:126645162:T:C	rs4549631	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	127483943	127483944	chr6:127483944:A:G	rs1512449	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr6	127716851	127716852	chr6:127716852:G:A	rs146442272	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr6	127863592	127863593	chr6:127863593:T:C	rs270041	T	C	T	Sox1_MA0870.1	5	1	+	8.440362486994282	1.537197728346524	AACAATTGGAGTGTA
chr6	127932691	127932692	chr6:127932692:T:C	rs1044512983	T	C	T	Sox1_MA0870.1	0	1	-	8.12048399430795	6.778360851501196	ATCAATATCAGTGGT
chr6	128606178	128606179	chr6:128606179:C:T	rs148888641	C	T	C	Sox1_MA0870.1	13	1	+	5.3227905685879415	7.500445866038936	AGCACTAGGATTGCT
chr6	128710136	128710137	chr6:128710137:A:T	rs141254550	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr6	128731935	128731936	chr6:128731936:G:A	rs6569556	G	A	A	Sox1_MA0870.1	15	0	+	0	0	.
chr6	129104418	129104419	chr6:129104419:A:C	rs9388686	A	C	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	129249617	129249618	chr6:129249618:T:A	rs3778123	T	A	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr6	129292745	129292746	chr6:129292746:T:G	rs4257879	T	G	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	129318408	129318409	chr6:129318409:C:T	chr6:129318409:C:T	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr6	129318411	129318412	chr6:129318412:C:T	rs113995977	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr6	129526827	129526828	chr6:129526828:A:G	rs2006724	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr6	129565742	129565743	chr6:129565743:A:T	rs77357380	A	T	A	Sox1_MA0870.1	34	0	+	0	0	.
chr6	129890639	129890640	chr6:129890640:T:C	rs9968804	T	C	C	Sox1_MA0870.1	26	0	-	0	0	.
chr6	130113108	130113109	chr6:130113109:G:A	rs6934316	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr6	130245536	130245537	chr6:130245537:C:T	rs55737947	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr6	130245542	130245543	chr6:130245543:A:G	rs9492501	A	G	a	Sox1_MA0870.1	15	0	-	0	0	.
chr6	130309783	130309784	chr6:130309784:T:C	rs73615694	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr6	130431746	130431747	chr6:130431747:G:A	rs4897423	G	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr6	130500771	130500772	chr6:130500772:G:T	rs112906624	G	T	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr6	130513527	130513528	chr6:130513528:G:A	rs142291591	G	A	G	Sox1_MA0870.1	12	1	+	5.423946048936969	-1.4848087303782518	CCCACTTGCAGTGTG
chr6	130598324	130598325	chr6:130598325:A:G	rs145275245	A	G	A	Sox1_MA0870.1	4	1	+	11.675994633841235	4.8984163796710485	AACAATGCCATTGCA
chr6	130598326	130598327	chr6:130598327:G:C	rs77437540	G	C	G	Sox1_MA0870.1	6	1	+	11.675994633841235	7.825402324148752	AACAATGCCATTGCA
chr6	130827722	130827723	chr6:130827723:A:T	rs9388856	A	T	A	Sox1_MA0870.1	11	1	-	7.907817598188498	1.0050849113316676	AACACTGACAGTGCA
chr6	131029962	131029963	chr6:131029963:T:C	rs1855078	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr6	131826475	131826476	chr6:131826476:G:C	rs6917903	G	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr6	131925037	131925038	chr6:131925038:C:T	rs77197652	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr6	132053814	132053815	chr6:132053815:A:G	rs191234828	A	G	A	Sox1_MA0870.1	11	1	-	6.601612998248976	1.6462180124386427	GACAAATTCATTGAT
chr6	132068963	132068964	chr6:132068964:A:G	rs73545585	A	G	A	Sox1_MA0870.1	34	0	+	0	0	.
chr6	132269225	132269226	chr6:132269226:C:T	rs1950683	C	T	T	Sox1_MA0870.1	12	1	-	4.344155331863737	-2.564599447451483	TATACTAGCATTGCT
chr6	132333691	132333692	chr6:132333692:C:T	rs11968833	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr6	132728833	132728834	chr6:132728834:G:A	rs45553436	G	A	G	Sox1_MA0870.1	6	1	+	5.13255680898766	6.671163502128378	GTCACTGGCATTGCA
chr6	132758654	132758655	chr6:132758655:C:T	rs6911025	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr6	132814693	132814694	chr6:132814694:A:G	rs888345218	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr6	132814724	132814725	chr6:132814725:T:G	rs12202302	T	G	T	Sox1_MA0870.1	0	1	-	7.450387004576532	6.214089656021551	AACAAAAGCATTGAC
chr6	133092468	133092469	chr6:133092469:G:A	rs78121991	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr6	133137022	133137023	chr6:133137023:A:G	rs7756963	A	G	G	Sox1_MA0870.1	1	1	+	4.926696363788165	0.8284057083950237	AACAACAAAATTGTT
chr6	133158225	133158226	chr6:133158226:T:C	rs77562673	T	C	T	Sox1_MA0870.1	3	1	-	3.3653811639369686	-3.5352085032602565	CCCATTAGCATTGCT
chr6	133528650	133528651	chr6:133528651:A:G	rs3822939	A	G	G	Sox1_MA0870.1	11	1	-	5.529033349639802	0.5736383638294675	ATCACAACCATTGTC
chr6	133595023	133595024	chr6:133595024:A:G	rs12198984	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	133752075	133752076	chr6:133752076:A:G	rs2207405	A	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	133788706	133788707	chr6:133788707:A:G	chr6:133788707:A:G	A	G	a	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	133896972	133896973	chr6:133896973:G:A	rs12214596	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	133972117	133972118	chr6:133972118:G:A	rs74393117	G	A	G	Sox1_MA0870.1	8	1	-	6.659643933422039	2.4780343867847576	AACAAATACATTGAG
chr6	134003756	134003757	chr6:134003757:T:C	rs190985588	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	134003771	134003772	chr6:134003772:G:A	rs9375999	G	A	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	134195226	134195227	chr6:134195227:C:T	rs117423888	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr6	134195227	134195228	chr6:134195228:G:C	rs79274754	G	C	G	Sox1_MA0870.1	26	0	-	0	0	.
chr6	134333601	134333602	chr6:134333602:G:C	rs191741645	G	C	G	Sox1_MA0870.1	8	1	-	9.399637401640202	5.629134408739866	AACAATTTCTTTGTT
chr6	134382089	134382090	chr6:134382090:A:G	rs78156561	A	G	A	Sox1_MA0870.1	5	1	-	9.838388169019762	2.935223410372003	AACAATAGCAGTGAA
chr6	134535214	134535215	chr6:134535215:C:T	rs9389191	C	T	T	Sox1_MA0870.1	8	1	+	4.171073572094969	-0.010535974542313475	ACCAATTACTTTGTA
chr6	135217453	135217454	chr6:135217454:G:A	rs2179308	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	135600433	135600434	chr6:135600434:C:T	rs114986612	C	T	c	Sox1_MA0870.1	30	0	-	0	0	.
chr6	135698008	135698009	chr6:135698009:C:T	rs12202212	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	135936810	135936811	chr6:135936811:G:A	rs73775625	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr6	136051460	136051461	chr6:136051461:C:T	rs114224649	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr6	136716385	136716386	chr6:136716386:T:C	rs77761220	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	136962891	136962892	chr6:136962892:A:C	rs6926744	A	C	A	Sox1_MA0870.1	4	1	+	3.7994526020664985	1.842639667441282	AACAATCACAATGTG
chr6	136995692	136995693	chr6:136995693:C:T	rs10484795	C	T	C	Sox1_MA0870.1	2	1	+	4.0167016768048605	-2.8920531025103604	ACCAATTCCAATGTG
chr6	137333255	137333256	chr6:137333256:A:G	rs72981489	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr6	137333277	137333278	chr6:137333278:T:G	chr6:137333278:T:G	T	G	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	137402406	137402407	chr6:137402407:A:T	rs6912317	A	T	T	Sox1_MA0870.1	14	1	-	4.886055805924081	2.9850424811389336	CTCAATTTCATTATT
chr6	137427711	137427712	chr6:137427712:A:G	rs6929588	A	G	G	Sox1_MA0870.1	9	1	+	5.630472716471473	-1.278282062843747	AACCATGGCATTGAG
chr6	137427724	137427725	chr6:137427725:T:C	rs115177216	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr6	137495025	137495026	chr6:137495026:C:T	rs6910320	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr6	137530230	137530231	chr6:137530231:T:G	rs62434150	T	G	T	Sox1_MA0870.1	9	1	-	6.948099668016096	0.03934488870087449	AACTCTTCCATTGTA
chr6	137665694	137665695	chr6:137665695:C:T	rs79184826	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr6	137752540	137752541	chr6:137752541:G:A	rs142601174	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr6	137762827	137762828	chr6:137762828:C:T	rs77271426	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	137819808	137819809	chr6:137819809:A:C	rs75107996	A	C	A	Sox1_MA0870.1	24	0	+	0	0	.
chr6	138115486	138115487	chr6:138115487:A:G	rs74346063	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr6	138158076	138158077	chr6:138158077:C:G	rs1334706	C	G	C	Sox1_MA0870.1	12	1	-	5.10803597591355	-1.8007188034016708	GACAATCACAGTGGT
chr6	138192696	138192697	chr6:138192697:G:C	rs11759254	G	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr6	138430913	138430914	chr6:138430914:C:G	rs118003870	C	G	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	138673511	138673512	chr6:138673512:A:G	rs77652318	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	138805834	138805835	chr6:138805835:T:C	rs6939456	T	C	T	Sox1_MA0870.1	10	1	+	5.4994310628299115	-1.309266021306423	CACAACATCATTGGT
chr6	138862741	138862742	chr6:138862742:G:A	rs12204850	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	138943792	138943793	chr6:138943793:T:G	rs6899737	T	G	G	Sox1_MA0870.1	0	1	-	7.888009823141745	6.651712474586766	ATCAAAGACATTGTT
chr6	139030055	139030056	chr6:139030056:A:C	rs62441849	A	C	G	Sox1_MA0870.1	27	0	+	0	0	.
chr6	139044192	139044193	chr6:139044193:T:C	rs9484232	T	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	139155209	139155210	chr6:139155210:C:T	rs9403046	C	T	T	Sox1_MA0870.1	8	1	+	4.29686760135755	0.1152580547202694	CACAATGGCATTTAT
chr6	139202216	139202217	chr6:139202217:C:T	rs115144400	C	T	C	Sox1_MA0870.1	3	1	+	5.635976300764527	5.207445919725368	AACCATTTCAGTGAT
chr6	139231320	139231321	chr6:139231321:C:T	rs7748799	C	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr6	139241302	139241303	chr6:139241303:G:C	rs10499208	G	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	139252291	139252292	chr6:139252292:C:T	rs150695430	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr6	139364617	139364618	chr6:139364618:A:G	rs113106360	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	139494659	139494660	chr6:139494660:G:A	rs9389690	G	A	G	Sox1_MA0870.1	10	1	+	3.4609758589342543	-1.1065962966385183	CTCACTAGCAGTGGC
chr6	139494670	139494671	chr6:139494671:A:T	rs9403082	A	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr6	139501184	139501185	chr6:139501185:A:G	rs62440903	A	G	A	Sox1_MA0870.1	10	1	-	5.870933574186756	-0.9377635099495759	CTAAATACCATTGTT
chr6	139501189	139501190	chr6:139501190:A:G	rs4895563	A	G	A	Sox1_MA0870.1	5	1	-	5.870933574186756	-1.0322311844609993	CTAAATACCATTGTT
chr6	139698973	139698974	chr6:139698974:A:G	rs113886690	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	139760010	139760011	chr6:139760011:A:G	rs9373247	A	G	A	Sox1_MA0870.1	10	1	-	4.373445848050238	-2.4352512360860956	GTCATTATCATTGTC
chr6	139764157	139764158	chr6:139764158:T:C	rs7774968	T	C	C	Sox1_MA0870.1	29	0	-	0	0	.
chr6	139784365	139784366	chr6:139784366:A:G	rs9403120	A	G	A	Sox1_MA0870.1	16	0	+	0	0	.
chr6	139828745	139828746	chr6:139828746:A:T	rs62430239	A	T	A	Sox1_MA0870.1	34	0	+	0	0	.
chr6	139852807	139852808	chr6:139852808:G:A	rs118190830	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	139982087	139982088	chr6:139982088:G:A	rs576011813	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr6	140031508	140031509	chr6:140031509:T:C	rs56030520	T	C	C	Sox1_MA0870.1	3	1	-	4.3541172096153655	-2.5464724575818583	CTCAATATCATAGTC
chr6	140058920	140058921	chr6:140058921:T:G	rs62431062	T	G	T	Sox1_MA0870.1	23	0	-	0	0	.
chr6	140295688	140295689	chr6:140295689:T:G	rs12662848	T	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr6	140385490	140385491	chr6:140385491:A:G	rs9403174	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	140987870	140987871	chr6:140987871:C:A	rs7749385	C	A	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr6	141483127	141483128	chr6:141483128:T:C	rs74331666	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	142320418	142320419	chr6:142320419:A:G	rs9385993	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr6	142320468	142320469	chr6:142320469:T:C	rs12189801	T	C	T	Sox1_MA0870.1	34	0	+	0	0	.
chr6	142705621	142705622	chr6:142705622:C:T	rs111516269	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr6	142841887	142841888	chr6:142841888:A:G	rs6912129	A	G	A	Sox1_MA0870.1	10	1	-	7.001269880631234	0.19257279649490044	CACAATTTAATTGCT
chr6	142907503	142907504	chr6:142907504:A:T	rs9403420	A	T	A	Sox1_MA0870.1	9	1	+	7.32158059676087	0.4128258174456487	CACAAAGCCATTGCT
chr6	143079530	143079531	chr6:143079531:A:G	rs9386021	A	G	G	Sox1_MA0870.1	10	1	-	5.281260672634595	-1.5274364115017383	ATCAATCCCATTGAT
chr6	143135469	143135470	chr6:143135470:T:C	rs3804535	T	C	C	Sox1_MA0870.1	7	1	-	8.352438845317383	7.955460517520875	CACAATAAAAGTGTT
chr6	143200304	143200305	chr6:143200305:A:G	rs7745568	A	G	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	143219910	143219911	chr6:143219911:C:T	rs145597550	C	T	C	Sox1_MA0870.1	8	1	+	5.470328351163178	1.2887188045258953	CACAACGGCATTGCT
chr6	143219926	143219927	chr6:143219927:C:A	rs2876551	C	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr6	143398140	143398141	chr6:143398141:G:A	rs223586	G	A	G	Sox1_MA0870.1	2	1	-	6.705965121890761	-0.20278965742445865	CCCAATAAGAGTGTT
chr6	143427224	143427225	chr6:143427225:T:C	chr6:143427225:T:C	T	C	T	Sox1_MA0870.1	11	1	+	4.526261310933494	-0.4291336748768394	CACAATTACATTCCA
chr6	143616917	143616918	chr6:143616918:G:C	rs13199393	G	C	G	Sox1_MA0870.1	34	0	-	0	0	.
chr6	143654019	143654020	chr6:143654020:A:G	rs11155315	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr6	143949780	143949781	chr6:143949781:T:G	rs76015148	T	G	T	Sox1_MA0870.1	19	0	+	0	0	.
chr6	144021084	144021085	chr6:144021085:C:A	rs77516841	C	A	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr6	144667953	144667954	chr6:144667954:G:A	rs746160444	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	144719006	144719007	chr6:144719007:A:G	rs75376745	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr6	144897571	144897572	chr6:144897572:G:A	rs9399520	G	A	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	145004661	145004662	chr6:145004662:C:G	rs951020	C	G	G	Sox1_MA0870.1	25	0	+	0	0	.
chr6	145067615	145067616	chr6:145067616:C:G	rs117389178	C	G	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr6	145279651	145279652	chr6:145279652:C:A	rs557970	C	A	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	145279673	145279674	chr6:145279674:T:C	rs557229	T	C	T	Sox1_MA0870.1	3	1	+	9.873083037177834	10.301613418216995	TACTATAGCATTGTT
chr6	145404681	145404682	chr6:145404682:A:G	rs4243477	A	G	A	Sox1_MA0870.1	6	1	+	4.795275017908853	3.2566683247681354	CTCAACAACATTGTC
chr6	145830093	145830094	chr6:145830094:A:T	rs6570723	A	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr6	145899621	145899622	chr6:145899622:G:C	rs2265472	G	C	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	146211735	146211736	chr6:146211736:T:C	rs990519	T	C	C	Sox1_MA0870.1	9	1	-	6.615374785058377	-0.2933799942568426	ACAAATACCATTGTT
chr6	146361020	146361021	chr6:146361021:G:T	rs362847	G	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	146363927	146363928	chr6:146363928:T:A	rs2252798	T	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	146700194	146700195	chr6:146700195:A:G	rs759035039	A	G	A	Sox1_MA0870.1	11	1	-	6.985495036036864	2.0301000502265305	TACAAAGACAGTGTT
chr6	146794097	146794098	chr6:146794098:T:G	rs59383774	T	G	T	Sox1_MA0870.1	27	0	-	0	0	.
chr6	146904826	146904827	chr6:146904827:A:T	rs73582241	A	T	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	147066012	147066013	chr6:147066013:T:C	rs73786884	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr6	147322792	147322793	chr6:147322793:A:T	rs561450709	A	T	A	Sox1_MA0870.1	25	0	+	0	0	.
chr6	147528904	147528905	chr6:147528905:T:C	rs77628336	T	C	T	Sox1_MA0870.1	10	1	+	7.170165668458749	0.3614685843224156	AACAGTACCATTGAT
chr6	147553742	147553743	chr6:147553743:C:T	rs118019023	C	T	C	Sox1_MA0870.1	6	1	-	4.465723822384826	6.0043305155255435	GACACTGACCTTGTC
chr6	147622244	147622245	chr6:147622245:C:T	rs7756592	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr6	147641949	147641950	chr6:147641950:A:G	rs9497834	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	147714094	147714095	chr6:147714095:C:G	rs3915072	C	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr6	147740253	147740254	chr6:147740254:A:G	rs57142885	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr6	147740260	147740261	chr6:147740261:C:T	rs58592548	C	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	147984133	147984134	chr6:147984134:G:A	rs112727943	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr6	148192624	148192625	chr6:148192625:T:G	rs9497963	T	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	148423469	148423470	chr6:148423470:C:T	rs114795033	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr6	148451223	148451224	chr6:148451224:A:G	rs6940972	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr6	148759164	148759165	chr6:148759165:T:C	rs11751562	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr6	148764851	148764852	chr6:148764852:C:T	rs113717991	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr6	148913134	148913135	chr6:148913135:T:G	rs9399670	T	G	G	Sox1_MA0870.1	4	1	-	6.597513605929517	4.640700671304302	GCCAATGGCATTGCA
chr6	148924624	148924625	chr6:148924625:C:T	rs1871918	C	T	c	Sox1_MA0870.1	-13	0	-	0	0	.
chr6	149054579	149054580	chr6:149054580:C:G	rs13217006	C	G	G	Sox1_MA0870.1	0	1	-	6.840071690730484	6.9458974849822575	GACAATAGCAGAGTT
chr6	149167376	149167377	chr6:149167377:A:G	rs13214977	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr6	149171544	149171545	chr6:149171545:A:G	rs1448087734	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	149171547	149171548	chr6:149171548:G:C	rs11155628	G	C	g	Sox1_MA0870.1	-4	0	+	0	0	.
chr6	149177246	149177247	chr6:149177247:A:G	rs7751665	A	G	G	Sox1_MA0870.1	10	1	-	5.138684058360692	-1.6700130257756416	AGCAATTGGATTGAT
chr6	149307140	149307141	chr6:149307141:A:G	rs661838	A	G	G	Sox1_MA0870.1	1	1	+	5.332797831952433	1.2345071765592919	AACAATTCCGTTGCA
chr6	149318630	149318631	chr6:149318631:G:A	rs367696503	G	A	a	Sox1_MA0870.1	-16	0	+	0	0	.
chr6	149334775	149334776	chr6:149334776:A:G	rs532008	A	G	A	Sox1_MA0870.1	5	1	-	7.597782075658804	0.6946173170110442	CACAATGTCCTTGTT
chr6	149421610	149421611	chr6:149421611:G:A	rs12110948	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr6	149444010	149444011	chr6:149444011:T:A	rs57485886	T	A	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr6	149477229	149477230	chr6:149477230:C:G	rs444784	C	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr6	149477241	149477242	chr6:149477242:C:T	rs571070879	C	T	C	Sox1_MA0870.1	12	1	-	7.369962253607234	0.46120747429201303	GACCCTGCCATTGTT
chr6	150273226	150273227	chr6:150273227:T:C	rs789481	T	C	C	Sox1_MA0870.1	5	1	+	13.761662456411976	6.858497697764218	GACAATATCATTGCT
chr6	150297258	150297259	chr6:150297259:G:C	rs11965959	G	C	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	150356617	150356618	chr6:150356618:C:A	rs607971	C	A	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr6	150356653	150356654	chr6:150356654:G:A	rs607612	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr6	150567584	150567585	chr6:150567585:C:A	rs62432618	C	A	C	Sox1_MA0870.1	0	1	-	5.404428167396656	4.807877204500948	GCCAGTACCATTGTT
chr6	150668991	150668992	chr6:150668992:A:G	rs185172259	A	G	A	Sox1_MA0870.1	9	1	+	6.155316735323083	-0.7534380439921359	CTCCATGCCATTGTT
chr6	150720215	150720216	chr6:150720216:C:T	rs9383542	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr6	150807053	150807054	chr6:150807054:T:G	rs6908190	T	G	G	Sox1_MA0870.1	13	1	-	5.278901386714617	6.446772115852782	AACACAAGCATTGAG
chr6	150814248	150814249	chr6:150814249:A:G	rs79102053	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	151015176	151015177	chr6:151015177:T:G	rs6910091	T	G	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	151056294	151056295	chr6:151056295:A:C	rs116972452	A	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	151060075	151060076	chr6:151060076:C:T	rs147917720	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	151060120	151060121	chr6:151060121:C:T	rs112739100	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr6	151254808	151254809	chr6:151254809:C:T	rs17080959	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr6	151254815	151254816	chr6:151254816:A:G	rs187019384	A	G	A	Sox1_MA0870.1	10	1	-	4.994441715665314	-1.8142553684710196	ATCTCTGTCATTGTT
chr6	151254821	151254822	chr6:151254822:G:C	rs12195960	G	C	G	Sox1_MA0870.1	4	1	-	4.994441715665314	0.17367639612034258	ATCTCTGTCATTGTT
chr6	151299453	151299454	chr6:151299454:A:G	rs9383565	A	G	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr6	151346431	151346432	chr6:151346432:A:G	rs4870012	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr6	151551312	151551313	chr6:151551313:G:T	rs9479068	G	T	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	151551364	151551365	chr6:151551365:T:C	rs9371537	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr6	151629099	151629100	chr6:151629100:A:G	rs6557161	A	G	G	Sox1_MA0870.1	1	1	+	7.513271022905013	3.4149803675118697	GACACTTTGATTGTG
chr6	151648190	151648191	chr6:151648191:A:G	rs3020302	A	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr6	151648226	151648227	chr6:151648227:T:A	rs11155807	T	A	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	151722255	151722256	chr6:151722256:A:G	rs149125850	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr6	151765549	151765550	chr6:151765550:C:T	rs17081662	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	152096006	152096007	chr6:152096007:G:A	rs9341056	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr6	152245862	152245863	chr6:152245863:G:T	rs192403019	G	T	G	Sox1_MA0870.1	4	1	-	3.965402189896444	5.92221512452166	CACACTTTCAGTCTT
chr6	152299646	152299647	chr6:152299647:T:C	rs17216894	T	C	T	Sox1_MA0870.1	9	1	-	6.045797936575825	-0.8629568427393949	TACACTTACACTGTT
chr6	152381812	152381813	chr6:152381813:A:C	rs115792796	A	C	A	Sox1_MA0870.1	3	1	+	4.317342846223229	-0.7684220788149445	CACACTTCCATTCTA
chr6	152458797	152458798	chr6:152458798:G:A	rs34610829	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	152461492	152461493	chr6:152461493:C:T	rs506181	C	T	T	Sox1_MA0870.1	11	1	+	7.351527449836762	12.306922435647095	AACAAAAGCATCGTT
chr6	152746791	152746792	chr6:152746792:G:A	rs17083008	G	A	A	Sox1_MA0870.1	12	1	+	10.297900143224972	3.389145363909751	AGCACTTGCATTGTT
chr6	152816166	152816167	chr6:152816167:C:A	rs76718311	C	A	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	152933058	152933059	chr6:152933059:T:C	rs6915028	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	152948646	152948647	chr6:152948647:T:A	rs9384055	T	A	A	Sox1_MA0870.1	11	1	+	6.789438045984188	-0.11329464087264418	GATAATATCAGTGTT
chr6	153027572	153027573	chr6:153027573:A:G	rs598662	A	G	G	Sox1_MA0870.1	14	1	-	4.0877034347214725	2.576694030240068	ATCATTTCCATTGCT
chr6	153027606	153027607	chr6:153027607:T:C	rs598623	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	153791358	153791359	chr6:153791359:G:A	rs7739682	G	A	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	153948316	153948317	chr6:153948317:T:A	rs508654	T	A	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr6	153978832	153978833	chr6:153978833:C:T	rs790917	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr6	153978859	153978860	chr6:153978860:T:C	rs790916	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	154044976	154044977	chr6:154044977:C:T	rs579316	C	T	T	Sox1_MA0870.1	11	1	+	4.441813938550029	9.397208924360362	TACAATGCCAGCGCT
chr6	154134559	154134560	chr6:154134560:A:T	rs485399	A	T	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	154219188	154219189	chr6:154219189:T:G	rs6921548	T	G	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr6	154458084	154458085	chr6:154458085:C:T	rs114004899	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr6	154511588	154511589	chr6:154511589:G:T	rs183622754	G	T	G	Sox1_MA0870.1	12	1	+	4.186910216094148	-2.7218445632210724	CACAATTTCAGCGCC
chr6	155050378	155050379	chr6:155050379:T:C	rs9322495	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	155083495	155083496	chr6:155083496:T:C	rs1889489	T	C	C	Sox1_MA0870.1	9	1	-	6.91304000887804	0.00428522956282007	GACAATCACATTGCA
chr6	155137672	155137673	chr6:155137673:C:T	rs371975682	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	155188766	155188767	chr6:155188767:A:G	rs189457288	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr6	155205081	155205082	chr6:155205082:G:C	rs9397788	G	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	155471398	155471399	chr6:155471399:C:G	rs7774182	C	G	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	155524098	155524099	chr6:155524099:T:C	rs6557431	T	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	155862012	155862013	chr6:155862013:C:T	rs4463267	C	T	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	155880362	155880363	chr6:155880363:T:G	rs117626653	T	G	T	Sox1_MA0870.1	23	0	+	0	0	.
chr6	156498804	156498805	chr6:156498805:A:G	rs2250759	A	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr6	156564015	156564016	chr6:156564016:C:T	rs35354867	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr6	156617902	156617903	chr6:156617903:C:T	rs750713271	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	156828795	156828796	chr6:156828796:T:C	rs9480393	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	156999797	156999798	chr6:156999798:T:G	rs11156129	T	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr6	157047006	157047007	chr6:157047007:T:G	rs17088057	T	G	T	Sox1_MA0870.1	1	1	-	6.633847510430168	2.8647071255856686	AACACAGGCATTGCT
chr6	157089406	157089407	chr6:157089407:A:G	rs17088104	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr6	157230851	157230852	chr6:157230852:T:G	rs148079503	T	G	T	Sox1_MA0870.1	26	0	+	0	0	.
chr6	157432626	157432627	chr6:157432627:T:C	rs17165322	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr6	157571279	157571280	chr6:157571280:A:C	rs559726635	A	C	A	Sox1_MA0870.1	21	0	-	0	0	.
chr6	157748922	157748923	chr6:157748923:C:T	rs7742219	C	T	C	Sox1_MA0870.1	8	1	+	8.245664464649805	4.064054918012522	AACAATAGCATGGCT
chr6	157795826	157795827	chr6:157795827:A:C	rs2803363	A	C	C	Sox1_MA0870.1	3	1	+	7.561020991116628	2.4752560660784533	TACAATTTCAATGTT
chr6	157811500	157811501	chr6:157811501:A:G	rs16900456	A	G	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	158069430	158069431	chr6:158069431:A:C	rs116798432	A	C	A	Sox1_MA0870.1	34	0	+	0	0	.
chr6	158073535	158073536	chr6:158073536:G:A	rs9459298	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr6	158257471	158257472	chr6:158257472:A:G	rs6920121	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	158286643	158286644	chr6:158286644:A:G	chr6:158286644:A:G	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr6	158811061	158811062	chr6:158811062:C:G	rs3123134	C	G	C	Sox1_MA0870.1	32	0	-	0	0	.
chr6	158840722	158840723	chr6:158840723:A:G	rs3127160	A	G	G	Sox1_MA0870.1	9	1	+	5.280889065735842	-1.6278657135793795	GACCATGGCATTGCA
chr6	158927334	158927335	chr6:158927335:G:A	rs6927518	G	A	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr6	158927348	158927349	chr6:158927349:T:C	rs6912697	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	158972178	158972179	chr6:158972179:G:A	rs2235823	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr6	159004703	159004704	chr6:159004704:A:G	rs187659570	A	G	A	Sox1_MA0870.1	11	1	-	5.265169169563992	0.30977418375365895	AACACTTTCATTACT
chr6	159041122	159041123	chr6:159041123:C:T	rs4709269	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	159085744	159085745	chr6:159085745:G:C	rs9355259	G	C	G	Sox1_MA0870.1	2	1	+	6.450490653360745	13.359245432675966	AAGAATAGCAGTGTG
chr6	159187948	159187949	chr6:159187949:C:T	rs9456374	C	T	C	Sox1_MA0870.1	10	1	-	4.336485310591239	-0.23108684498153353	TACAATAGCAGTATA
chr6	159316909	159316910	chr6:159316910:G:A	rs117664822	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr6	159566106	159566107	chr6:159566107:T:C	rs113818340	T	C	T	Sox1_MA0870.1	13	1	+	6.446033876795161	4.268378579344167	CACACTTCCATCGTG
chr6	159718928	159718929	chr6:159718929:G:A	rs4709363	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	159847341	159847342	chr6:159847342:A:G	rs1004252	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr6	159936004	159936005	chr6:159936005:T:G	rs1040574	T	G	G	Sox1_MA0870.1	3	1	-	3.4751428961309663	-1.610622028907207	CAAACTGCCATTGCT
chr6	160050158	160050159	chr6:160050159:T:G	rs8191818	T	G	T	Sox1_MA0870.1	14	1	-	5.009787522608334	5.399791442912077	ATCACTGGCATTGGA
chr6	160096855	160096856	chr6:160096856:C:T	rs998203	C	T	T	Sox1_MA0870.1	15	0	-	0	0	.
chr6	160139900	160139901	chr6:160139901:C:T	rs9457843	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr6	160146895	160146896	chr6:160146896:G:T	rs3798167	G	T	G	Sox1_MA0870.1	12	1	+	14.809211829022392	7.900457049707171	AACAATTCCATTGTC
chr6	160198778	160198779	chr6:160198779:G:C	rs150972629	G	C	G	Sox1_MA0870.1	5	1	+	5.083321461776883	5.083321461776883	AACACGGACAGTGTT
chr6	160240425	160240426	chr6:160240426:T:C	rs315989	T	C	T	Sox1_MA0870.1	13	1	+	6.537055626217871	4.359400328766877	AACATTATCAGTGTG
chr6	160279866	160279867	chr6:160279867:T:C	rs604258	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	160883209	160883210	chr6:160883210:A:T	rs62435349	A	T	a	Sox1_MA0870.1	10	1	-	6.198679555087542	-0.6100175290487907	AAGAATTACATTGGT
chr6	161058968	161058969	chr6:161058969:A:G	rs76304068	A	G	A	Sox1_MA0870.1	10	1	-	5.332797831952433	-1.4758992521839	AACAATTCCATTTCA
chr6	161075930	161075931	chr6:161075931:G:A	rs71565788	G	A	G	Sox1_MA0870.1	10	1	+	10.021185954795628	5.453613799222856	AACAAAATCAGTGTT
chr6	161137065	161137066	chr6:161137066:C:A	rs16892196	C	A	C	Sox1_MA0870.1	27	0	-	0	0	.
chr6	161215254	161215255	chr6:161215255:G:A	rs78353268	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	161407502	161407503	chr6:161407503:C:G	rs10945749	C	G	C	Sox1_MA0870.1	4	1	+	5.290391561937532	0.46962624239255923	CATACTACCATTGTA
chr6	161430131	161430132	chr6:161430132:A:C	rs4263565	A	C	C	Sox1_MA0870.1	11	1	-	3.1177876076803828	-3.784945079176448	GACAATGGCAGTCCT
chr6	161435032	161435033	chr6:161435033:A:T	rs115956068	A	T	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr6	161435055	161435056	chr6:161435056:T:G	rs116241970	T	G	T	Sox1_MA0870.1	6	1	+	4.3329854262768555	3.7674274488504396	GCCAATTGCATTTTT
chr6	161435069	161435070	chr6:161435070:A:T	rs114914735	A	T	A	Sox1_MA0870.1	20	0	+	0	0	.
chr6	161512017	161512018	chr6:161512018:T:C	rs6927018	T	C	C	Sox1_MA0870.1	11	1	+	6.653707019211879	1.6983120334015456	CACACCTACATTGTT
chr6	161832667	161832668	chr6:161832668:G:A	rs11962503	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr6	161838667	161838668	chr6:161838668:G:A	rs11966665	G	A	A	Sox1_MA0870.1	12	1	+	3.247757549471139	-3.6609972298440816	CACACTAGCAGCGCC
chr6	161838673	161838674	chr6:161838674:G:A	rs58551010	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr6	161922936	161922937	chr6:161922937:T:C	rs75567417	T	C	T	Sox1_MA0870.1	5	1	+	4.06581335202442	-2.83735140662334	CACAATTGCAGTTTA
chr6	161922943	161922944	chr6:161922944:T:C	rs143404189	T	C	T	Sox1_MA0870.1	12	1	+	4.06581335202442	4.06581335202442	CACAATTGCAGTTTA
chr6	162156225	162156226	chr6:162156226:C:T	rs2849609	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr6	162177898	162177899	chr6:162177899:C:T	rs9458474	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr6	162256721	162256722	chr6:162256722:A:C	chr6:162256722:A:C	A	C	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	162326768	162326769	chr6:162326769:C:T	rs7776148	C	T	T	Sox1_MA0870.1	4	1	+	5.120980800886423	0.30021548134145004	AACACTAGCATAGAT
chr6	162488818	162488819	chr6:162488819:G:C	rs112200634	G	C	G	Sox1_MA0870.1	18	0	-	0	0	.
chr6	162616633	162616634	chr6:162616634:G:A	rs58763955	G	A	G	Sox1_MA0870.1	8	1	-	5.931559071335787	1.7499495246985044	AGCCATACCATTGCT
chr6	163183899	163183900	chr6:163183900:G:A	rs2763996	G	A	A	Sox1_MA0870.1	7	1	-	4.9472500823058265	4.935421029757453	AACCAAACCAGTGTT
chr6	163254487	163254488	chr6:163254488:A:C	rs775005090	A	C	A	Sox1_MA0870.1	5	1	-	6.696942200891723	-0.2062225577560366	CACAATTGCTTTGTC
chr6	163326507	163326508	chr6:163326508:T:C	rs2321513	T	C	C	Sox1_MA0870.1	11	1	+	4.130711594617564	-0.82468339119277	CTCACTGCCATTGGC
chr6	163352360	163352361	chr6:163352361:A:G	rs9347742	A	G	G	Sox1_MA0870.1	28	0	+	0	0	.
chr6	163724025	163724026	chr6:163724026:T:C	rs12525490	T	C	T	Sox1_MA0870.1	13	1	+	7.34540009232099	5.167744794869996	CACAATCACAGTGTC
chr6	163904893	163904894	chr6:163904894:G:A	rs2281407	G	A	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	163941667	163941668	chr6:163941668:C:T	rs4709024	C	T	C	Sox1_MA0870.1	2	1	+	4.048865985675379	-2.859888793639843	CACGCTTCCATTGCT
chr6	163941676	163941677	chr6:163941677:T:C	rs4709025	T	C	C	Sox1_MA0870.1	11	1	+	4.048865985675379	-0.9065290001349547	CACGCTTCCATTGCT
chr6	164037233	164037234	chr6:164037234:T:C	rs2070284	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr6	164037254	164037255	chr6:164037255:T:C	rs2070286	T	C	T	Sox1_MA0870.1	9	1	-	8.034937642500825	1.1261828631856048	GACACATGCATTGTT
chr6	164131916	164131917	chr6:164131917:T:C	rs58778525	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr6	164150883	164150884	chr6:164150884:T:C	rs78794252	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr6	164208682	164208683	chr6:164208683:G:T	rs1325402	G	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr6	164242576	164242577	chr6:164242577:G:A	rs6930653	G	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr6	164709922	164709923	chr6:164709923:A:G	rs10946017	A	G	G	Sox1_MA0870.1	1	1	+	5.6789807575624	1.580690102169258	CACACTGACAGTGAG
chr6	164814380	164814381	chr6:164814381:C:T	rs2136934	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr6	164908922	164908923	chr6:164908923:T:C	rs1285086031	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	165129944	165129945	chr6:165129945:T:C	rs17569276	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr6	165206918	165206919	chr6:165206919:G:C	rs1029386879	G	C	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	165625086	165625087	chr6:165625087:T:C	rs56228667	T	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	165782969	165782970	chr6:165782970:T:C	rs9348044	T	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr6	165799841	165799842	chr6:165799842:G:T	rs75415167	G	T	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	165845539	165845540	chr6:165845540:A:G	rs117258088	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr6	165922234	165922235	chr6:165922235:G:A	rs75340726	G	A	A	Sox1_MA0870.1	16	0	+	0	0	.
chr6	166072883	166072884	chr6:166072884:T:G	rs12192972	T	G	T	Sox1_MA0870.1	18	0	-	0	0	.
chr6	166258517	166258518	chr6:166258518:C:T	rs142296018	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr6	166276111	166276112	chr6:166276112:C:T	rs9355566	C	T	T	Sox1_MA0870.1	12	1	-	3.957954988596656	-2.950799790718564	AACAGAGCCATTGTT
chr6	166437309	166437310	chr6:166437310:C:T	rs9348131	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr6	166437765	166437766	chr6:166437766:C:T	rs113312701	C	T	C	Sox1_MA0870.1	12	1	+	4.711440244685946	4.711440244685946	AACACTGCCATTCCT
chr6	166456936	166456937	chr6:166456937:A:C	rs2235288	A	C	A	Sox1_MA0870.1	11	1	-	6.168329986596674	-0.7344027002601592	GAGAATTCCATTGTA
chr6	166551947	166551948	chr6:166551948:G:A	rs3799630	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	166565659	166565660	chr6:166565660:G:A	rs3778400	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr6	166798201	166798202	chr6:166798202:T:C	rs13437290	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr6	166970227	166970228	chr6:166970228:C:G	rs79373553	C	G	C	Sox1_MA0870.1	17	0	+	0	0	.
chr6	167298408	167298409	chr6:167298409:G:A	rs2981965	G	A	-	Sox1_MA0870.1	-10	0	-	0	0	.
chr6	167329073	167329074	chr6:167329074:T:C	rs73266936	T	C	T	Sox1_MA0870.1	11	1	+	6.501154257892098	1.5457592720817641	AGCACTTTCAGTGTC
chr6	167472971	167472972	chr6:167472972:T:C	rs9505736	T	C	t	Sox1_MA0870.1	-6	0	+	0	0	.
chr6	167509970	167509971	chr6:167509971:C:T	rs6899849	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr6	167555423	167555424	chr6:167555424:A:G	rs879074575	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	167789539	167789540	chr6:167789540:G:A	rs2285244	G	A	G	Sox1_MA0870.1	12	1	+	6.2666306309550475	-0.6421241483601735	GCCAATAGGATTGCT
chr6	167789546	167789547	chr6:167789547:G:A	rs2285245	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr6	168005148	168005149	chr6:168005149:A:G	rs7773670	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	168149833	168149834	chr6:168149834:A:T	rs6455490	A	T	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	168149844	168149845	chr6:168149845:A:G	rs6929011	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	168231134	168231135	chr6:168231135:G:A	rs10806678	G	A	-	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	168457348	168457349	chr6:168457349:A:G	rs2763276	A	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr6	168575769	168575770	chr6:168575770:C:T	rs6455536	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr6	168620677	168620678	chr6:168620678:C:T	rs3935853	C	T	C	Sox1_MA0870.1	10	1	-	3.3101783747892815	-1.2573937807834903	CACAGTGTCAGTGCT
chr6	168620689	168620690	chr6:168620690:G:A	rs2342640	G	A	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	168826850	168826851	chr6:168826851:A:C	rs9969068	A	C	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr6	168826885	168826886	chr6:168826886:A:G	rs73246787	A	G	A	Sox1_MA0870.1	22	0	+	0	0	.
chr6	168919234	168919235	chr6:168919235:C:T	rs58942365	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr6	168919651	168919652	chr6:168919652:G:T	rs73789974	G	T	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr6	168926364	168926365	chr6:168926365:A:G	rs915497904	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr6	168926369	168926370	chr6:168926370:C:T	rs57695620	C	T	c	Sox1_MA0870.1	-10	0	+	0	0	.
chr6	169071175	169071176	chr6:169071176:G:A	rs9689923	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr6	169071190	169071191	chr6:169071191:A:G	rs116239143	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr6	169341762	169341763	chr6:169341763:T:C	rs7452203	T	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr6	169381222	169381223	chr6:169381223:G:A	rs1474569	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr6	169398477	169398478	chr6:169398478:C:A	rs3006185	C	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr6	169539677	169539678	chr6:169539678:G:A	rs80114444	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr6	169677226	169677227	chr6:169677227:G:A	rs74838157	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr6	169895684	169895685	chr6:169895685:T:G	rs36137265	T	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr6	169923433	169923434	chr6:169923434:C:T	rs879088426	C	T	c	Sox1_MA0870.1	7	1	+	4.291682390277332	4.279853337728959	CAGAATACCATTGAC
chr6	169923937	169923938	chr6:169923938:C:A	rs927676800	C	A	a	Sox1_MA0870.1	20	0	-	0	0	.
chr6	169968648	169968649	chr6:169968649:T:C	rs949388467	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr6	170002483	170002484	chr6:170002484:C:A	rs943881130	C	A	C	Sox1_MA0870.1	26	0	+	0	0	.
chr6	170045754	170045755	chr6:170045755:C:T	rs79290324	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr6	170045767	170045768	chr6:170045768:T:A	rs3942996	T	A	A	Sox1_MA0870.1	33	0	+	0	0	.
chr6	170085491	170085492	chr6:170085492:T:C	rs9366263	T	C	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	170147502	170147503	chr6:170147503:C:T	rs79362042	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr6	170202681	170202682	chr6:170202682:G:T	rs7769343	G	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr6	170302440	170302441	chr6:170302441:T:C	rs2005443	T	C	T	Sox1_MA0870.1	10	1	+	8.507011269699149	1.6983141855628152	AACCATATCATTGCC
chr6	170394819	170394820	chr6:170394820:C:T	rs7772226	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr6	170404310	170404311	chr6:170404311:G:C	rs9295406	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr6	170408332	170408333	chr6:170408333:A:G	rs926221	A	G	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr6	170439570	170439571	chr6:170439571:G:T	rs62428586	G	T	G	Sox1_MA0870.1	0	1	-	4.698622178495505	5.934919527050486	CGCAATTGCAGTGCA
chr6	170439571	170439572	chr6:170439572:G:A	rs6905944	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr6	170459708	170459709	chr6:170459709:A:C	rs76918707	A	C	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	61652	61653	chr7:61653:G:A	rs146093299	G	A	g	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	115853	115854	chr7:115854:T:C	rs34702399	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr7	183024	183025	chr7:183025:C:G	rs28497001	C	G	C	Sox1_MA0870.1	14	1	+	3.8479031317625396	3.6332304485258407	GACAATGGCTTTGCC
chr7	459957	459958	chr7:459958:G:T	rs140504673	G	T	T	Sox1_MA0870.1	27	0	+	0	0	.
chr7	463220	463221	chr7:463221:C:T	rs143533142	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr7	537368	537369	chr7:537369:G:A	rs146808558	G	A	G	Sox1_MA0870.1	6	1	+	4.713610097930168	6.252216791070886	GCCAATGCCAGTGCC
chr7	586192	586193	chr7:586193:C:T	rs13241164	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr7	678805	678806	chr7:678806:A:C	rs67525723	A	C	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	735010	735011	chr7:735011:C:T	rs760745080	C	T	-	Sox1_MA0870.1	17	0	+	0	0	.
chr7	735136	735137	chr7:735137:C:T	rs12702635	C	T	-	Sox1_MA0870.1	2	1	+	5.428291890325806	-1.4804628889894151	CACGATGTCATTGCT
chr7	880780	880781	chr7:880781:A:G	rs77178709	A	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	920812	920813	chr7:920813:C:T	rs3808343	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr7	1000890	1000891	chr7:1000891:G:A	rs112650357	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr7	1121412	1121413	chr7:1121413:C:T	rs62431982	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	1160643	1160644	chr7:1160644:A:T	rs76116355	A	T	A	Sox1_MA0870.1	33	0	-	0	0	.
chr7	1275909	1275910	chr7:1275910:C:T	rs13221556	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	1278981	1278982	chr7:1278982:C:T	rs28408943	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr7	1742906	1742907	chr7:1742907:G:A	rs138962782	G	A	G	Sox1_MA0870.1	0	1	+	5.174369226763962	6.516492369570716	GTCAATATCAGTGAA
chr7	1812481	1812482	chr7:1812482:C:T	rs561049135	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	1843596	1843597	chr7:1843597:C:T	rs116982397	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	1851748	1851749	chr7:1851749:G:A	rs12672508	G	A	G	Sox1_MA0870.1	10	1	+	5.600620995169761	1.033048839596987	GGCACTTACAGTGTC
chr7	1851755	1851756	chr7:1851756:G:A	rs546216929	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr7	1983083	1983084	chr7:1983084:G:A	rs118013978	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr7	2020214	2020215	chr7:2020215:G:C	rs113843655	G	C	G	Sox1_MA0870.1	28	0	-	0	0	.
chr7	2020261	2020262	chr7:2020262:G:C	rs531550999	G	C	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	2039219	2039220	chr7:2039220:G:C	rs55683212	G	C	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	2110519	2110520	chr7:2110520:C:A	rs149055808	C	A	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	2204356	2204357	chr7:2204357:G:C	rs77417403	G	C	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	2248952	2248953	chr7:2248953:C:G	rs34002396	C	G	C	Sox1_MA0870.1	10	1	-	7.0428282216512255	2.4752560660784533	TACCATTTCAGTGTT
chr7	2393161	2393162	chr7:2393162:G:C	rs2057840	G	C	G	Sox1_MA0870.1	8	1	-	6.616338134250141	2.8458351413498026	AACACTAACAGTTTT
chr7	2468436	2468437	chr7:2468437:T:C	rs2906166	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr7	2512090	2512091	chr7:2512091:G:A	rs80006756	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	2626916	2626917	chr7:2626917:A:T	rs117814416	A	T	.	Sox1_MA0870.1	-3	0	+	0	0	.
chr7	2724819	2724820	chr7:2724820:C:T	rs79941659	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	2734748	2734749	chr7:2734749:G:A	rs56356906	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr7	2759828	2759829	chr7:2759829:G:T	rs77925799	G	T	G	Sox1_MA0870.1	28	0	-	0	0	.
chr7	2759835	2759836	chr7:2759836:G:A	rs141690815	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr7	2759844	2759845	chr7:2759845:C:T	rs150502471	C	T	C	Sox1_MA0870.1	12	1	-	5.0511692518954545	-1.8575855274197663	GACAATCGCATTGGA
chr7	2760434	2760435	chr7:2760435:C:T	rs17132655	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	2871386	2871387	chr7:2871387:G:T	rs185445107	G	T	G	Sox1_MA0870.1	12	1	+	4.058381583178146	-2.850373196137075	GACATTTCCAGTGTA
chr7	3007216	3007217	chr7:3007217:T:C	rs1968923	T	C	C	Sox1_MA0870.1	4	1	-	4.358484028889933	-2.419094225280254	AACCATTGCATTATT
chr7	3007232	3007233	chr7:3007233:G:A	rs74555857	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	3064968	3064969	chr7:3064969:T:C	rs1965950	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr7	3149607	3149608	chr7:3149608:C:T	rs147336446	C	T	c	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	3191897	3191898	chr7:3191898:G:C	rs12540303	G	C	G	Sox1_MA0870.1	10	1	+	3.7598989119216704	-0.8076732436511022	CTCCATAGCAGTGTG
chr7	3216430	3216431	chr7:3216431:G:C	rs62439546	G	C	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	3222135	3222136	chr7:3222136:C:A	rs7789178	C	A	A	Sox1_MA0870.1	16	0	+	0	0	.
chr7	3244505	3244506	chr7:3244506:T:C	rs10452788	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr7	3318643	3318644	chr7:3318644:T:C	rs12700789	T	C	c	Sox1_MA0870.1	27	0	+	0	0	.
chr7	3374105	3374106	chr7:3374106:C:T	rs12673513	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr7	3400081	3400082	chr7:3400082:A:C	rs6948557	A	C	A	Sox1_MA0870.1	21	0	+	0	0	.
chr7	3673111	3673112	chr7:3673112:C:T	rs55906803	C	T	c	Sox1_MA0870.1	-6	0	+	0	0	.
chr7	3929144	3929145	chr7:3929145:G:C	rs12701291	G	C	G	Sox1_MA0870.1	2	1	-	6.34920285048897	-0.5595519288262522	GACAAATGCATTGGT
chr7	3944110	3944111	chr7:3944111:C:A	rs74684178	C	A	C	Sox1_MA0870.1	4	1	+	3.9779114173256445	5.934724351950861	AGCACAACCAGTGTT
chr7	3993928	3993929	chr7:3993929:A:G	rs1025915	A	G	A	Sox1_MA0870.1	10	1	-	4.967948145697737	-1.8407489384385962	ATCAAGAGCATTGCT
chr7	4057499	4057500	chr7:4057500:C:T	rs77269623	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr7	4057511	4057512	chr7:4057512:C:A	rs116464905	C	A	C	Sox1_MA0870.1	4	1	-	3.3226783967800553	3.3226783967800553	GACAGTAGCAGTGGT
chr7	4460287	4460288	chr7:4460288:C:G	rs7782258	C	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	4725229	4725230	chr7:4725230:G:A	rs11765781	G	A	G	Sox1_MA0870.1	2	1	+	3.1453848963396958	3.1453848963396958	GAGAATAGCAGTGCC
chr7	4725246	4725247	chr7:4725247:C:T	rs551519934	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr7	4725256	4725257	chr7:4725257:G:A	rs7785686	G	A	A	Sox1_MA0870.1	29	0	+	0	0	.
chr7	5528656	5528657	chr7:5528657:C:A	rs79074016	C	A	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr7	5591466	5591467	chr7:5591467:G:C	rs73334454	G	C	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	5839372	5839373	chr7:5839373:C:T	rs17322413	C	T	.	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	5840167	5840168	chr7:5840168:A:G	rs308098	A	G	.	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	6380161	6380162	chr7:6380162:C:T	rs836488	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr7	6618923	6618924	chr7:6618924:A:G	rs2248342	A	G	g	Sox1_MA0870.1	11	1	-	7.731930875062973	2.7765358892526386	GACACTGACATTGGC
chr7	6641374	6641375	chr7:6641375:G:A	rs4720680	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	6659273	6659274	chr7:6659274:C:A	rs872424	C	A	C	Sox1_MA0870.1	16	0	-	0	0	.
chr7	6876078	6876079	chr7:6876079:G:C	rs62440041	G	C	.	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	7060301	7060302	chr7:7060302:T:C	rs2347679	T	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr7	7062306	7062307	chr7:7062307:T:A	rs77906399	T	A	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	7146922	7146923	chr7:7146923:G:A	rs724254	G	A	A	Sox1_MA0870.1	7	1	-	4.436356879551544	4.42452782700317	AAGAATACGATTGCT
chr7	7321852	7321853	chr7:7321853:A:G	rs17506507	A	G	A	Sox1_MA0870.1	4	1	-	4.550310398372668	9.37107571791764	AACATTGACATTGAC
chr7	7385748	7385749	chr7:7385749:G:A	rs1294633	G	A	A	Sox1_MA0870.1	8	1	-	6.158732259381296	1.9771227127440127	AATACTTACATTGTG
chr7	7484272	7484273	chr7:7484273:T:G	rs77228513	T	G	T	Sox1_MA0870.1	23	0	-	0	0	.
chr7	7505110	7505111	chr7:7505111:G:A	rs10486175	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	7566103	7566104	chr7:7566104:T:C	rs75374076	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	7595532	7595533	chr7:7595533:T:C	rs17168807	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	7595585	7595586	chr7:7595586:C:T	rs73340646	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr7	7682014	7682015	chr7:7682015:A:C	rs62432580	A	C	A	Sox1_MA0870.1	3	1	+	6.368649942628039	1.282885017589864	TTCACTAATATTGTT
chr7	7694377	7694378	chr7:7694378:G:A	rs7791543	G	A	A	Sox1_MA0870.1	13	1	-	4.714037004144572	6.891692301595565	TACAATTGGAGTGCC
chr7	7953863	7953864	chr7:7953864:C:T	rs58586931	C	T	C	Sox1_MA0870.1	2	1	-	6.974588566951309	6.974588566951309	TAGAATAACATTGTA
chr7	8071149	8071150	chr7:8071150:A:G	rs10486207	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	8155842	8155843	chr7:8155843:A:C	rs78393208	A	C	A	Sox1_MA0870.1	23	0	-	0	0	.
chr7	8211891	8211892	chr7:8211892:T:C	rs3779364	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr7	8363676	8363677	chr7:8363677:C:G	rs4034617	C	G	G	Sox1_MA0870.1	19	0	-	0	0	.
chr7	8437709	8437710	chr7:8437710:G:C	chr7:8437710:G:C	G	C	G	Sox1_MA0870.1	34	0	+	0	0	.
chr7	8509846	8509847	chr7:8509847:C:T	rs2057865	C	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr7	8590849	8590850	chr7:8590850:C:G	rs10257762	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	8985233	8985234	chr7:8985234:T:C	rs11982591	T	C	T	Sox1_MA0870.1	10	1	+	5.398167656331875	-1.4105294278044576	AACAAAAGCATTATT
chr7	9130167	9130168	chr7:9130168:G:A	rs188374	G	A	a	Sox1_MA0870.1	12	1	+	6.038233096610616	-0.870521682704605	AACAAATATATTGTC
chr7	9889397	9889398	chr7:9889398:C:G	rs2915138	C	G	G	Sox1_MA0870.1	7	1	-	3.607983091049387	3.5752005913098546	CACACTGGCACTGCT
chr7	10129021	10129022	chr7:10129022:A:C	rs17162680	A	C	A	Sox1_MA0870.1	17	0	-	0	0	.
chr7	10241560	10241561	chr7:10241561:C:G	rs73269571	C	G	C	Sox1_MA0870.1	13	1	+	4.35390924140691	2.889016812220832	TACACTTCAATTGCT
chr7	10337317	10337318	chr7:10337318:T:A	rs6948603	T	A	T	Sox1_MA0870.1	29	0	+	0	0	.
chr7	10343126	10343127	chr7:10343127:T:C	rs13236213	T	C	T	Sox1_MA0870.1	10	1	+	8.495501071880671	1.6868039877443373	GGCAATATCATTGAT
chr7	10471612	10471613	chr7:10471613:A:G	rs12538000	A	G	A	Sox1_MA0870.1	10	1	+	3.4760425925061034	8.043614748078873	AACACTTCCAATGCA
chr7	10819420	10819421	chr7:10819421:T:C	rs142124911	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr7	10999113	10999114	chr7:10999114:A:G	rs77043289	A	G	A	Sox1_MA0870.1	10	1	-	7.049363025206041	0.2406659410697075	AACAAGAAGATTGTT
chr7	10999130	10999131	chr7:10999131:T:C	rs189408303	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	11130768	11130769	chr7:11130769:T:G	rs7790383	T	G	T	Sox1_MA0870.1	5	1	+	6.675785454401716	-0.2273793042460428	CACCATTACAGTGTC
chr7	11340082	11340083	chr7:11340083:C:T	rs10245115	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	11557759	11557760	chr7:11557760:T:C	rs10229585	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	11564276	11564277	chr7:11564277:A:G	rs2189640	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	11574723	11574724	chr7:11574724:C:A	rs72	C	A	c	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	11574725	11574726	chr7:11574726:G:A	rs56094756	G	A	g	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	12064773	12064774	chr7:12064774:T:C	rs75627357	T	C	T	Sox1_MA0870.1	10	1	+	8.929272226759565	2.120575142623231	GCCACTAACATTGTG
chr7	12120200	12120201	chr7:12120201:G:A	rs35572431	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr7	12522838	12522839	chr7:12522839:A:C	rs12671228	A	C	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr7	12567220	12567221	chr7:12567221:C:G	rs1859989	C	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr7	12567225	12567226	chr7:12567226:A:G	rs1859990	A	G	G	Sox1_MA0870.1	19	0	-	0	0	.
chr7	12775694	12775695	chr7:12775695:C:T	rs10262101	C	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr7	12806007	12806008	chr7:12806008:C:T	rs6460979	C	T	T	Sox1_MA0870.1	9	1	-	6.546504854352044	13.455259633667266	GACAATTTCGTTGTC
chr7	12806140	12806141	chr7:12806141:A:G	rs62445814	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr7	13144587	13144588	chr7:13144588:A:T	rs60323503	A	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr7	13166117	13166118	chr7:13166118:T:C	rs2357202	T	C	T	Sox1_MA0870.1	7	1	-	4.528681133647744	4.131702805851237	ACCACTGACAGTGCC
chr7	13198726	13198727	chr7:13198727:G:A	rs194024	G	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr7	13369148	13369149	chr7:13369149:G:T	rs1583255	G	T	G	Sox1_MA0870.1	4	1	+	5.94001478918447	5.94001478918447	CCCAGTAACATTGTT
chr7	13508131	13508132	chr7:13508132:G:T	rs2723394	G	T	T	Sox1_MA0870.1	8	1	-	4.320274318487866	-1.572895335830348	AACAATGACATCCTT
chr7	14366476	14366477	chr7:14366477:T:C	rs74474860	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr7	14447032	14447033	chr7:14447033:A:G	rs10950526	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	14447047	14447048	chr7:14447048:A:G	rs6943928	A	G	A	Sox1_MA0870.1	0	1	+	5.325565070553247	3.9834419277464947	ATCATTATCATTGTA
chr7	14457907	14457908	chr7:14457908:G:T	rs187444454	G	T	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	14606323	14606324	chr7:14606324:A:G	rs9638713	A	G	G	Sox1_MA0870.1	33	0	+	0	0	.
chr7	14760994	14760995	chr7:14760995:A:C	rs17168398	A	C	A	Sox1_MA0870.1	10	1	-	4.295816122373543	2.0546911938099823	GACCAAGTCATTGTT
chr7	14900298	14900299	chr7:14900299:C:T	rs217598	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	14960672	14960673	chr7:14960673:A:T	rs36909	A	T	A	Sox1_MA0870.1	5	1	-	8.32698824613268	3.307858232822147	CTCACTTTCATTGTC
chr7	14960679	14960680	chr7:14960680:G:A	rs36910	G	A	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	15042645	15042646	chr7:15042646:T:G	rs7788523	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	15245949	15245950	chr7:15245950:C:A	rs61113173	C	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr7	15461402	15461403	chr7:15461403:C:T	rs6461185	C	T	C	Sox1_MA0870.1	5	1	+	7.466553316605202	14.369718075252962	TACAACTTCATTGTT
chr7	15601384	15601385	chr7:15601385:G:A	rs966470	G	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr7	15601416	15601417	chr7:15601417:T:C	rs17168881	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	15612851	15612852	chr7:15612852:T:G	rs2237494	T	G	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	15694048	15694049	chr7:15694049:T:C	rs4721453	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr7	15822368	15822369	chr7:15822369:T:C	rs140755429	T	C	T	Sox1_MA0870.1	13	1	+	5.807475655983598	3.6298203585326045	CAAAATAAGATTGTT
chr7	16039569	16039570	chr7:16039570:A:T	rs4721467	A	T	T	Sox1_MA0870.1	29	0	-	0	0	.
chr7	16077293	16077294	chr7:16077294:T:A	rs62440852	T	A	T	Sox1_MA0870.1	29	0	+	0	0	.
chr7	16078568	16078569	chr7:16078569:A:G	rs11971693	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	16269461	16269462	chr7:16269462:A:G	chr7:16269462:A:G	A	G	A	Sox1_MA0870.1	9	1	+	11.899058033642893	4.990303254327673	AGCAATAACATTGTG
chr7	16300192	16300193	chr7:16300193:G:A	rs192469436	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	16343365	16343366	chr7:16343366:A:T	rs2526602	A	T	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	16356470	16356471	chr7:16356471:G:T	rs4517017	G	T	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	16356481	16356482	chr7:16356482:T:C	rs13237371	T	C	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	16554937	16554938	chr7:16554938:G:C	rs116540265	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	16607106	16607107	chr7:16607107:G:A	rs7788389	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	16653496	16653497	chr7:16653497:G:C	rs818586	G	C	G	Sox1_MA0870.1	33	0	-	0	0	.
chr7	16653506	16653507	chr7:16653507:A:G	rs818587	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr7	16679038	16679039	chr7:16679039:G:A	chr7:16679039:G:A	G	A	G	Sox1_MA0870.1	6	1	+	9.20419789375965	10.742804586900366	CACACTGTCATTGAT
chr7	16702605	16702606	chr7:16702606:T:C	rs78383859	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	16705963	16705964	chr7:16705964:T:C	rs1149510	T	C	C	Sox1_MA0870.1	14	1	-	4.633416774177845	4.808748011244889	AACCCTGCCATTGCA
chr7	16741306	16741307	chr7:16741307:A:G	rs864211	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr7	16741947	16741948	chr7:16741948:A:G	rs13230372	A	G	A	Sox1_MA0870.1	9	1	+	6.3304452966633455	-0.5783094826518759	CCCAATGCCAGTGCT
chr7	16744318	16744319	chr7:16744319:T:C	rs1723804	T	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr7	16745706	16745707	chr7:16745707:C:A	rs56147833	C	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr7	16803733	16803734	chr7:16803734:T:A	rs3823653	T	A	A	Sox1_MA0870.1	0	1	-	4.113911354199063	2.175237248496601	AACACTTAGGTTGTT
chr7	16805180	16805181	chr7:16805181:G:C	rs77617133	G	C	G	Sox1_MA0870.1	34	0	+	0	0	.
chr7	16882741	16882742	chr7:16882742:A:G	rs10950638	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	17043097	17043098	chr7:17043098:A:G	rs662774	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	17043269	17043270	chr7:17043270:A:G	rs4721562	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr7	17153788	17153789	chr7:17153789:G:A	rs139276265	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	17368125	17368126	chr7:17368126:T:G	rs74542680	T	G	T	Sox1_MA0870.1	24	0	-	0	0	.
chr7	17531286	17531287	chr7:17531287:T:G	rs139475333	T	G	T	Sox1_MA0870.1	32	0	+	0	0	.
chr7	17632666	17632667	chr7:17632667:G:A	rs74801627	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	17968958	17968959	chr7:17968959:G:A	rs34058374	G	A	A	Sox1_MA0870.1	12	1	+	3.729878053711493	-3.178876725603727	CACAATAAGAATGCT
chr7	17994807	17994808	chr7:17994808:C:T	rs12699936	C	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr7	17994810	17994811	chr7:17994811:A:G	rs12699937	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr7	18370899	18370900	chr7:18370900:A:T	chr7:18370900:A:T	A	T	A	Sox1_MA0870.1	30	0	-	0	0	.
chr7	18698695	18698696	chr7:18698696:C:T	rs1182736	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr7	18702250	18702251	chr7:18702251:T:G	rs212671	T	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr7	18793170	18793171	chr7:18793171:C:T	rs141076905	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr7	18866884	18866885	chr7:18866885:A:C	rs146650699	A	C	A	Sox1_MA0870.1	3	1	+	4.909459057013183	-0.17630586802499193	CTCAATGTCAGTGCA
chr7	18895214	18895215	chr7:18895215:G:A	rs10272709	G	A	A	Sox1_MA0870.1	27	0	+	0	0	.
chr7	18917207	18917208	chr7:18917208:G:A	rs17140258	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr7	19020388	19020389	chr7:19020389:T:G	rs2906044	T	G	g	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	19263728	19263729	chr7:19263729:A:G	rs10275718	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr7	19752251	19752252	chr7:19752252:G:A	rs12386623	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr7	20238949	20238950	chr7:20238950:G:A	rs117421608	G	A	G	Sox1_MA0870.1	2	1	-	3.462698285429985	-3.446056493885235	ACCACTAACAATGTG
chr7	20241501	20241502	chr7:20241502:C:A	rs117757442	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr7	20277124	20277125	chr7:20277125:C:A	rs73264504	C	A	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr7	20280154	20280155	chr7:20280155:G:A	rs62453044	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	20280191	20280192	chr7:20280192:T:A	rs62453045	T	A	T	Sox1_MA0870.1	28	0	+	0	0	.
chr7	20299483	20299484	chr7:20299484:T:C	rs35129652	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	20307195	20307196	chr7:20307196:T:C	rs558928109	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	20355297	20355298	chr7:20355298:C:G	rs67199281	C	G	C	Sox1_MA0870.1	4	1	+	4.632292040968555	-0.18847327857641683	CACACTCCCATTGCA
chr7	20355324	20355325	chr7:20355325:C:T	rs73086586	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr7	20404097	20404098	chr7:20404098:A:G	rs6972297	A	G	A	Sox1_MA0870.1	5	1	-	4.587713522857545	-2.3154512357902144	AACAATTGCATTCAC
chr7	20404457	20404458	chr7:20404458:C:T	rs6973059	C	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr7	20532906	20532907	chr7:20532907:G:T	rs916789	G	T	T	Sox1_MA0870.1	12	1	+	9.059966291629701	2.151211512314481	AACAAATCCAGTGTT
chr7	20843649	20843650	chr7:20843650:T:C	rs6960772	T	C	T	Sox1_MA0870.1	9	1	-	2.992878457745226	-3.9158763215699928	GGCACCACCATTGTT
chr7	21096550	21096551	chr7:21096551:G:T	rs17678809	G	T	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	21108058	21108059	chr7:21108059:A:C	rs11974269	A	C	A	Sox1_MA0870.1	14	1	+	10.973476398418395	11.363480318722138	AACAATACCAGTGCA
chr7	21123314	21123315	chr7:21123315:T:C	rs62439794	T	C	T	Sox1_MA0870.1	4	1	-	7.150043725233594	0.372465471063406	AACTATTGCATTGCC
chr7	21160722	21160723	chr7:21160723:G:A	rs57106142	G	A	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	21307852	21307853	chr7:21307853:T:C	rs1613562	T	C	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	21426538	21426539	chr7:21426539:T:C	rs2073535	T	C	T	Sox1_MA0870.1	4	1	-	4.71094224256932	-2.0666360116008677	CTCAAAGCCATTGTC
chr7	21426556	21426557	chr7:21426557:C:G	rs117219096	C	G	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	21672241	21672242	chr7:21672242:C:T	rs10950869	C	T	T	Sox1_MA0870.1	8	1	+	10.750678080861547	6.569068534224265	AGCAATTACATTGTA
chr7	21765058	21765059	chr7:21765059:A:G	rs17145312	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr7	21765390	21765391	chr7:21765391:A:C	rs1013671358	A	C	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	22041010	22041011	chr7:22041011:G:T	rs1476692	G	T	G	Sox1_MA0870.1	25	0	-	0	0	.
chr7	22051309	22051310	chr7:22051310:G:A	rs1637081	G	A	A	Sox1_MA0870.1	18	0	-	0	0	.
chr7	22056816	22056817	chr7:22056817:G:A	rs10260357	G	A	G	Sox1_MA0870.1	4	1	-	4.678466688332717	-0.1422986312122535	AGCACTTCCAGTGAT
chr7	22126403	22126404	chr7:22126404:C:T	rs1419755	C	T	T	Sox1_MA0870.1	4	1	+	6.988958581484901	2.1681932619399302	GTCACTGTCATTGCT
chr7	22142736	22142737	chr7:22142737:T:C	rs181321776	T	C	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	22194877	22194878	chr7:22194878:G:A	rs1050617845	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	22217807	22217808	chr7:22217808:T:C	rs4722112	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr7	22375283	22375284	chr7:22375284:C:T	rs6944521	C	T	C	Sox1_MA0870.1	22	0	+	0	0	.
chr7	22375849	22375850	chr7:22375850:T:G	rs80030891	T	G	T	Sox1_MA0870.1	16	0	-	0	0	.
chr7	22481835	22481836	chr7:22481836:A:C	rs6968662	A	C	A	Sox1_MA0870.1	18	0	+	0	0	.
chr7	22675554	22675555	chr7:22675555:C:T	rs2961305	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	22963646	22963647	chr7:22963647:G:A	rs115923476	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	23022606	23022607	chr7:23022607:C:T	rs148850755	C	T	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	23022650	23022651	chr7:23022651:C:T	rs1441229413	C	T	c	Sox1_MA0870.1	28	0	+	0	0	.
chr7	23022651	23022652	chr7:23022652:G:A	rs77520274	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr7	23078430	23078431	chr7:23078431:T:A	rs6957013	T	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	23110123	23110124	chr7:23110124:A:G	chr7:23110124:A:G	A	G	A	Sox1_MA0870.1	11	1	-	6.7557424730922735	1.800347487281939	AACAAAAAGATTGCT
chr7	23236042	23236043	chr7:23236043:G:A	rs59529962	G	A	G	Sox1_MA0870.1	12	1	+	4.6146895099865475	-2.294065269328674	TACACAATCAGTGTC
chr7	23411868	23411869	chr7:23411869:C:T	rs189221807	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr7	23897578	23897579	chr7:23897579:C:T	rs10225926	C	T	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	24336651	24336652	chr7:24336652:C:T	rs2722379	C	T	T	Sox1_MA0870.1	15	0	-	0	0	.
chr7	24336686	24336687	chr7:24336687:G:A	rs73088775	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	24576031	24576032	chr7:24576032:A:C	rs78797842	A	C	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	24787125	24787126	chr7:24787126:C:T	rs370216106	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	24787169	24787170	chr7:24787170:G:T	rs191079451	G	T	G	Sox1_MA0870.1	25	0	+	0	0	.
chr7	24787178	24787179	chr7:24787179:G:A	rs116429702	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr7	24842722	24842723	chr7:24842723:A:G	rs73087718	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr7	24899267	24899268	chr7:24899268:C:G	rs131	C	G	C	Sox1_MA0870.1	29	0	-	0	0	.
chr7	25105976	25105977	chr7:25105977:T:C	rs6974844	T	C	g	Sox1_MA0870.1	32	0	-	0	0	.
chr7	25163893	25163894	chr7:25163894:A:C	rs2189293	A	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr7	25259984	25259985	chr7:25259985:G:C	rs62451646	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr7	25407969	25407970	chr7:25407970:T:A	rs6951954	T	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr7	25407971	25407972	chr7:25407972:A:G	rs6969555	A	G	A	Sox1_MA0870.1	20	0	+	0	0	.
chr7	25460899	25460900	chr7:25460900:C:A	rs17317312	C	A	C	Sox1_MA0870.1	2	1	+	8.913262672653769	2.0045078933385483	AACAATAACTTTGTA
chr7	25522251	25522252	chr7:25522252:C:T	rs6977303	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr7	25528234	25528235	chr7:25528235:T:C	rs10807828	T	C	C	Sox1_MA0870.1	11	1	+	8.928257719014145	3.9728627332038124	GACAATTGTATTGTA
chr7	25619806	25619807	chr7:25619807:C:T	rs17152043	C	T	C	Sox1_MA0870.1	1	1	-	7.235583064539654	11.333873719932795	AGCAAATGCATTGTT
chr7	25711218	25711219	chr7:25711219:C:A	rs775723380	C	A	C	Sox1_MA0870.1	25	0	-	0	0	.
chr7	25723517	25723518	chr7:25723518:C:A	rs11769488	C	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	25751186	25751187	chr7:25751187:T:C	rs56329358	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	25947828	25947829	chr7:25947829:A:C	rs12672505	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	26274237	26274238	chr7:26274238:G:A	rs940445309	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr7	26365732	26365733	chr7:26365733:A:G	rs2698716	A	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr7	26426199	26426200	chr7:26426200:C:T	rs1229684	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	26847024	26847025	chr7:26847025:G:A	rs10252268	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr7	26868976	26868977	chr7:26868977:T:C	rs10235680	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	27099899	27099900	chr7:27099900:G:T	rs151171339	G	T	G	Sox1_MA0870.1	7	1	+	5.440704065614582	5.396092513326675	AACAAATGAATTGTT
chr7	27157981	27157982	chr7:27157982:C:G	rs4722666	C	G	C	Sox1_MA0870.1	33	0	-	0	0	.
chr7	27186197	27186198	chr7:27186198:A:C	rs141152665	A	C	A	Sox1_MA0870.1	13	1	-	4.936689450670376	1.2941417240333037	CTCAATTGCATGGTT
chr7	27347184	27347185	chr7:27347185:C:T	rs4719888	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr7	27347201	27347202	chr7:27347202:A:G	rs28357211	A	G	A	Sox1_MA0870.1	6	1	-	4.534332133355408	0.11818184623650774	AACAAATACAGCGTT
chr7	27645263	27645264	chr7:27645264:T:C	rs12672811	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr7	27838457	27838458	chr7:27838458:A:G	rs1859328	A	G	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	28025078	28025079	chr7:28025079:C:T	rs10480067	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	28200790	28200791	chr7:28200791:T:C	rs180774964	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr7	28203566	28203567	chr7:28203567:T:C	rs10263934	T	C	T	Sox1_MA0870.1	10	1	+	9.123178723878656	2.3144816397423216	TACAATTTCATTGAA
chr7	28612154	28612155	chr7:28612155:A:G	rs41280	A	G	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	28640359	28640360	chr7:28640360:A:G	rs75235966	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr7	28865660	28865661	chr7:28865661:G:A	rs182776642	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr7	28866225	28866226	chr7:28866226:T:C	rs11763355	T	C	C	Sox1_MA0870.1	6	1	-	5.51615068628394	3.9775439931432213	AACAATATCATTAAC
chr7	28866236	28866237	chr7:28866237:G:A	rs73294992	G	A	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	28879252	28879253	chr7:28879253:A:G	rs372848239	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr7	28985998	28985999	chr7:28985999:C:T	rs1499227	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr7	29035682	29035683	chr7:29035683:A:T	rs607432	A	T	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr7	29069717	29069718	chr7:29069718:G:A	rs17675939	G	A	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	29218333	29218334	chr7:29218334:A:G	rs900195666	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr7	29469348	29469349	chr7:29469349:A:G	rs79776490	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr7	29472174	29472175	chr7:29472175:C:A	rs10255035	C	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr7	29493777	29493778	chr7:29493778:G:A	rs1946134	G	A	A	Sox1_MA0870.1	8	1	-	3.351901766260628	-0.829707780376654	AACAATGACAGAGCC
chr7	29649210	29649211	chr7:29649211:T:C	rs1641209	T	C	c	Sox1_MA0870.1	30	0	+	0	0	.
chr7	29794475	29794476	chr7:29794476:A:T	rs28479988	A	T	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr7	30041873	30041874	chr7:30041874:G:A	rs183682197	G	A	G	Sox1_MA0870.1	13	1	-	5.203022774520447	7.380678071971441	AACAATGACATAGCA
chr7	30185502	30185503	chr7:30185503:G:T	rs6462192	G	T	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	30427947	30427948	chr7:30427948:C:G	rs11536450	C	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	30669858	30669859	chr7:30669859:C:A	rs2190242	C	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr7	30728103	30728104	chr7:30728104:T:C	rs255160	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr7	30806002	30806003	chr7:30806003:G:A	rs12701041	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr7	30850544	30850545	chr7:30850545:G:A	rs78722842	G	A	g	Sox1_MA0870.1	19	0	-	0	0	.
chr7	30874969	30874970	chr7:30874970:A:G	rs577036312	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	30989624	30989625	chr7:30989625:G:C	rs78765106	G	C	G	Sox1_MA0870.1	31	0	+	0	0	.
chr7	30991243	30991244	chr7:30991244:C:T	rs73686068	C	T	C	Sox1_MA0870.1	12	1	-	4.456457609366806	-2.4522971699484137	AACACTGGCAGCGCT
chr7	31106840	31106841	chr7:31106841:A:G	rs2302476	A	G	G	Sox1_MA0870.1	6	1	-	4.1025362951001565	-0.3136139920187434	GACAATTCCAGTCTG
chr7	31115641	31115642	chr7:31115642:T:C	rs2192028	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr7	31183048	31183049	chr7:31183049:A:G	rs11543666	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	31188472	31188473	chr7:31188473:C:G	rs11976529	C	G	C	Sox1_MA0870.1	20	0	-	0	0	.
chr7	31203050	31203051	chr7:31203051:C:T	rs17470094	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr7	31337754	31337755	chr7:31337755:T:G	rs10238918	T	G	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr7	31885418	31885419	chr7:31885419:T:C	rs116213572	T	C	T	Sox1_MA0870.1	10	1	+	8.545745332141717	1.737048248005383	TGCAATTTCATTGTG
chr7	31997008	31997009	chr7:31997009:C:T	rs17336044	C	T	C	Sox1_MA0870.1	15	0	+	0	0	.
chr7	32206622	32206623	chr7:32206623:C:T	rs10257579	C	T	C	Sox1_MA0870.1	7	1	+	3.927116105863858	3.9152870533154847	CACACTGCCCTTGTG
chr7	32263903	32263904	chr7:32263904:A:G	rs62457470	A	G	A	Sox1_MA0870.1	9	1	+	5.384254435754556	-1.524500343560664	CACAATATCAGTCTC
chr7	32283487	32283488	chr7:32283488:T:C	rs17161132	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr7	32472188	32472189	chr7:32472189:T:G	rs17362028	T	G	T	Sox1_MA0870.1	19	0	+	0	0	.
chr7	32875591	32875592	chr7:32875592:C:A	rs7785065	C	A	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	32881461	32881462	chr7:32881462:G:A	rs77278941	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr7	32892338	32892339	chr7:32892339:G:A	rs7781666	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	32892365	32892366	chr7:32892366:C:A	rs1031506595	C	A	C	Sox1_MA0870.1	22	0	+	0	0	.
chr7	32948436	32948437	chr7:32948437:C:T	rs147572810	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	33050868	33050869	chr7:33050869:A:G	rs4720100	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	33551167	33551168	chr7:33551168:G:A	rs2392247	G	A	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	33551199	33551200	chr7:33551200:G:A	rs1882039	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr7	33601943	33601944	chr7:33601944:A:G	rs1451022	A	G	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	33639655	33639656	chr7:33639656:G:A	rs928552177	G	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	33669347	33669348	chr7:33669348:G:A	rs35296610	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	33982688	33982689	chr7:33982689:C:T	rs10486625	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr7	33982721	33982722	chr7:33982722:T:C	rs1029075968	T	C	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	33997005	33997006	chr7:33997006:G:A	rs9986855	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	34025529	34025530	chr7:34025530:T:A	rs74651988	T	A	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	34036007	34036008	chr7:34036008:A:G	rs76320157	A	G	A	Sox1_MA0870.1	11	1	-	4.040007618129176	-0.915387367681157	CACAACAACATTGGA
chr7	34063940	34063941	chr7:34063941:C:A	rs1420328	C	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	34088222	34088223	chr7:34088223:G:A	rs566879631	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	34491257	34491258	chr7:34491258:C:T	rs6951496	C	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	34723263	34723264	chr7:34723264:A:G	rs17198093	A	G	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	34735902	34735903	chr7:34735903:G:A	rs324391	G	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr7	35025914	35025915	chr7:35025915:A:C	rs329255	A	C	.	Sox1_MA0870.1	5	1	-	7.554913592669953	0.6517488340221926	ACCAATGTCAGTGCT
chr7	35255879	35255880	chr7:35255880:T:C	rs1003549	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	35316654	35316655	chr7:35316655:A:G	rs6976218	A	G	G	Sox1_MA0870.1	31	0	-	0	0	.
chr7	35316674	35316675	chr7:35316675:A:G	rs75314410	A	G	A	Sox1_MA0870.1	11	1	-	6.309494257978242	1.3540992721679075	CACCATTCCATTGCC
chr7	35560177	35560178	chr7:35560178:G:A	rs75342581	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr7	35561072	35561073	chr7:35561073:A:T	rs58933480	A	T	A	Sox1_MA0870.1	11	1	-	4.539711983086788	-2.3630207037700455	GTCTATGACATTGTC
chr7	35752466	35752467	chr7:35752467:C:T	rs76777832	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	35890826	35890827	chr7:35890827:A:C	rs10244144	A	C	A	Sox1_MA0870.1	26	0	-	0	0	.
chr7	35906493	35906494	chr7:35906494:T:C	rs78510295	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr7	36109041	36109042	chr7:36109042:C:A	rs10246132	C	A	C	Sox1_MA0870.1	20	0	-	0	0	.
chr7	36155986	36155987	chr7:36155987:G:C	rs73688713	G	C	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	36157050	36157051	chr7:36157051:T:C	rs2002958	T	C	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr7	36209117	36209118	chr7:36209118:A:G	rs73338940	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	36221114	36221115	chr7:36221115:A:G	rs2540678	A	G	a	Sox1_MA0870.1	11	1	-	5.208449808593719	0.2530548227833853	TACAAATTCAGTGTA
chr7	36448691	36448692	chr7:36448692:T:C	rs9639730	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	36522637	36522638	chr7:36522638:G:A	rs10273902	G	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr7	36596842	36596843	chr7:36596843:C:T	rs2727811	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	36735609	36735610	chr7:36735610:G:A	rs17379430	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	36884485	36884486	chr7:36884486:C:A	rs3778712	C	A	a	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	37019457	37019458	chr7:37019458:C:G	rs6964564	C	G	G	Sox1_MA0870.1	8	1	-	4.318182342855533	8.08868533575587	CACACTTGGATTGAG
chr7	37150408	37150409	chr7:37150409:C:T	rs77334007	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr7	37366748	37366749	chr7:37366749:A:G	rs1882070	A	G	A	Sox1_MA0870.1	3	1	+	4.807997609767863	-2.0925920574293615	AGCAATAGCATTCTC
chr7	37411902	37411903	chr7:37411903:T:C	rs529039184	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr7	37753299	37753300	chr7:37753300:T:C	rs10274478	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	37794025	37794026	chr7:37794026:A:G	rs17825495	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	37908444	37908445	chr7:37908445:A:T	rs2060711	A	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	37915351	37915352	chr7:37915352:T:C	rs2722315	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr7	37915386	37915387	chr7:37915387:G:A	rs2598112	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr7	37917459	37917460	chr7:37917460:G:C	rs115584196	G	C	G	Sox1_MA0870.1	24	0	+	0	0	.
chr7	37945570	37945571	chr7:37945571:T:A	rs78939164	T	A	T	Sox1_MA0870.1	5	1	+	3.76598881763096	-1.2531411956795746	AAAACTTCCATTGCC
chr7	37974313	37974314	chr7:37974314:A:T	rs1717737	A	T	T	Sox1_MA0870.1	11	1	-	5.384254435754556	-1.5184782511022759	CAAAATATCAGTGTC
chr7	38226748	38226749	chr7:38226749:C:G	rs10265214	C	G	G	Sox1_MA0870.1	31	0	-	0	0	.
chr7	38252601	38252602	chr7:38252602:A:G	rs6958249	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	38403370	38403371	chr7:38403371:C:G	rs2267804	C	G	G	Sox1_MA0870.1	15	0	-	0	0	.
chr7	38577421	38577422	chr7:38577422:C:T	rs6965722	C	T	t	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	38710235	38710236	chr7:38710236:A:T	rs1978172	A	T	a	Sox1_MA0870.1	4	1	+	11.70021906433019	4.922640810160002	TACAATATCATTGGT
chr7	38746609	38746610	chr7:38746610:G:A	rs73125611	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr7	38882271	38882272	chr7:38882272:C:T	rs28369620	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	39017431	39017432	chr7:39017432:A:G	rs859513	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr7	39084738	39084739	chr7:39084739:C:T	rs190592150	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr7	39299997	39299998	chr7:39299998:C:T	rs4130697	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	39325393	39325394	chr7:39325394:C:T	rs4723858	C	T	C	Sox1_MA0870.1	11	1	-	7.16453456553503	7.16453456553503	AACAATTTCAGGGTT
chr7	39331907	39331908	chr7:39331908:C:A	rs188643003	C	A	C	Sox1_MA0870.1	12	1	-	4.431141033075963	-2.4776137462392573	AACAAATGCATGGTT
chr7	39449135	39449136	chr7:39449136:T:G	rs2299123	T	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr7	39535167	39535168	chr7:39535168:A:G	rs12113030	A	G	G	Sox1_MA0870.1	0	1	+	12.45056592154506	11.108442778738304	AACACTTTCATTGTA
chr7	39684168	39684169	chr7:39684169:G:A	rs10486802	G	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	39826215	39826216	chr7:39826216:C:T	rs4295565	C	T	t	Sox1_MA0870.1	15	0	+	0	0	.
chr7	39834125	39834126	chr7:39834126:G:C	rs572027907	G	C	g	Sox1_MA0870.1	28	0	+	0	0	.
chr7	40211666	40211667	chr7:40211667:A:G	rs6966734	A	G	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	40231624	40231625	chr7:40231625:A:G	rs4723936	A	G	A	Sox1_MA0870.1	4	1	+	4.448918579316931	-2.328659674853257	AACAATATCAGGGCC
chr7	40701385	40701386	chr7:40701386:G:A	rs1379681551	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr7	40796345	40796346	chr7:40796346:T:C	rs1921746	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	40986000	40986001	chr7:40986001:G:C	rs6967858	G	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr7	41028182	41028183	chr7:41028183:A:G	rs1548630	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr7	41097374	41097375	chr7:41097375:C:T	rs116235239	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr7	41123389	41123390	chr7:41123390:T:C	rs6463006	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	41134486	41134487	chr7:41134487:C:T	rs138182481	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr7	41243506	41243507	chr7:41243507:G:A	rs35759722	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr7	41316444	41316445	chr7:41316445:T:C	rs37297	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr7	41336984	41336985	chr7:41336985:T:C	rs43213	T	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr7	41451734	41451735	chr7:41451735:A:C	rs78749107	A	C	A	Sox1_MA0870.1	1	1	+	7.137803067553987	3.368662682709486	AACACTAACATAGTG
chr7	41559731	41559732	chr7:41559732:T:A	rs73323904	T	A	T	Sox1_MA0870.1	11	1	+	5.798247027179658	-1.1044856596771742	CACAATGACAGTTTT
chr7	41573221	41573222	chr7:41573222:G:A	rs4724053	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr7	41573229	41573230	chr7:41573230:T:G	rs2624792	T	G	t	Sox1_MA0870.1	24	0	-	0	0	.
chr7	41735526	41735527	chr7:41735527:C:T	rs190455470	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr7	41847574	41847575	chr7:41847575:C:A	rs35287602	C	A	C	Sox1_MA0870.1	25	0	+	0	0	.
chr7	41874059	41874060	chr7:41874060:C:T	rs17639280	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr7	41889120	41889121	chr7:41889121:C:T	rs150847326	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	41980270	41980271	chr7:41980271:A:C	rs10486730	A	C	A	Sox1_MA0870.1	9	1	+	3.90236275421115	-3.0063920251040694	CTCCATGTCAGTGTT
chr7	42021923	42021924	chr7:42021924:C:T	rs2299142	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr7	42104690	42104691	chr7:42104691:A:G	rs7787414	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr7	42232491	42232492	chr7:42232492:G:A	rs188418902	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr7	42232497	42232498	chr7:42232498:A:G	rs10951676	A	G	A	Sox1_MA0870.1	13	1	-	4.772815029764006	2.595159732313011	CCCAAATTCATTGTC
chr7	42232524	42232525	chr7:42232525:C:T	rs547769967	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	42567546	42567547	chr7:42567547:T:A	rs60402639	T	A	T	Sox1_MA0870.1	15	0	-	0	0	.
chr7	42574647	42574648	chr7:42574648:T:G	rs192673816	T	G	T	Sox1_MA0870.1	30	0	-	0	0	.
chr7	42627069	42627070	chr7:42627070:T:C	rs2222550	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr7	43354022	43354023	chr7:43354023:A:G	rs12702034	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr7	43409574	43409575	chr7:43409575:C:G	rs6415276	C	G	G	Sox1_MA0870.1	12	1	-	10.021185954795628	3.1124311754804084	AACAAAATCAGTGTT
chr7	43665519	43665520	chr7:43665520:G:C	rs73108658	G	C	G	Sox1_MA0870.1	22	0	+	0	0	.
chr7	43731519	43731520	chr7:43731520:A:G	rs28412519	A	G	a	Sox1_MA0870.1	11	1	-	5.512118940121162	0.5567239543108277	ACCAAGGACATTGTT
chr7	43803823	43803824	chr7:43803824:G:A	rs1131372	G	A	G	Sox1_MA0870.1	2	1	-	4.129959736552184	-2.7787950427630377	CACACTGTCATTTTC
chr7	43826640	43826641	chr7:43826641:G:T	rs75485115	G	T	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	44477273	44477274	chr7:44477274:A:G	rs112978165	A	G	A	Sox1_MA0870.1	9	1	+	5.38563080636262	-1.5231239729525998	CACACCAACAGTGTT
chr7	44477297	44477298	chr7:44477298:T:A	rs307015	T	A	T	Sox1_MA0870.1	33	0	+	0	0	.
chr7	44538291	44538292	chr7:44538292:A:G	rs147201814	A	G	A	Sox1_MA0870.1	14	1	-	5.599975377097158	4.088965972615753	CACACTTCTATTGAT
chr7	44638078	44638079	chr7:44638079:C:T	rs116046892	C	T	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	44638081	44638082	chr7:44638082:C:A	rs112127822	C	A	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	44684226	44684227	chr7:44684227:A:G	rs7797184	A	G	A	Sox1_MA0870.1	4	1	+	5.413778208062256	-1.363800046107932	CCCAATGGCATTGGG
chr7	44973944	44973945	chr7:44973945:G:A	rs530845321	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr7	45024440	45024441	chr7:45024441:G:C	rs884082	G	C	G	Sox1_MA0870.1	15	0	-	0	0	.
chr7	45100616	45100617	chr7:45100617:G:A	rs113108041	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr7	45134821	45134822	chr7:45134822:C:T	rs11979485	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	45187692	45187693	chr7:45187693:C:G	rs17172492	C	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr7	45187722	45187723	chr7:45187723:C:T	rs13229410	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	45187724	45187725	chr7:45187725:A:G	rs35758250	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	45223313	45223314	chr7:45223314:A:G	rs757680	A	G	G	Sox1_MA0870.1	6	1	-	3.4143574177342115	-1.00179286938469	AACACCTGCATTGCA
chr7	45565942	45565943	chr7:45565943:C:T	rs73318920	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr7	45655837	45655838	chr7:45655838:T:C	rs2471226	T	C	T	Sox1_MA0870.1	5	1	+	9.446424291329219	2.5432595326814593	AACACTAACAGTGCA
chr7	45870398	45870399	chr7:45870399:G:A	rs1027438	G	A	.	Sox1_MA0870.1	14	1	+	5.0888783417326895	4.913547104665645	AACACTGAGATTGGG
chr7	45882753	45882754	chr7:45882754:C:T	rs73104683	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	45911630	45911631	chr7:45911631:G:A	rs13223993	G	A	A	Sox1_MA0870.1	34	0	+	0	0	.
chr7	45923504	45923505	chr7:45923505:T:A	rs10270457	T	A	T	Sox1_MA0870.1	18	0	+	0	0	.
chr7	45988977	45988978	chr7:45988978:C:T	rs1723939	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr7	45997885	45997886	chr7:45997886:G:A	rs788743	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	46107525	46107526	chr7:46107526:C:T	rs146074069	C	T	C	Sox1_MA0870.1	2	1	+	3.424182773697506	-3.4845720056177134	CCCACTGCCATTGGG
chr7	46126598	46126599	chr7:46126599:G:A	rs17172633	G	A	G	Sox1_MA0870.1	12	1	+	3.7841276465537157	-3.124627132761505	TATAATTCCATTGCC
chr7	46126904	46126905	chr7:46126905:C:G	rs13231830	C	G	C	Sox1_MA0870.1	20	0	+	0	0	.
chr7	46160154	46160155	chr7:46160155:G:T	rs6968071	G	T	G	Sox1_MA0870.1	20	0	-	0	0	.
chr7	46206676	46206677	chr7:46206677:G:A	rs114615235	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	46206682	46206683	chr7:46206683:C:A	rs537948336	C	A	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	46216047	46216048	chr7:46216048:A:G	rs78123299	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr7	46216059	46216060	chr7:46216060:T:C	rs1003069259	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr7	46318285	46318286	chr7:46318286:G:A	rs6970754	G	A	a	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	46366535	46366536	chr7:46366536:A:G	rs12333796	A	G	A	Sox1_MA0870.1	13	1	-	7.564733335088297	5.387078037637303	ACCAAATGCATTGTT
chr7	46370566	46370567	chr7:46370567:G:A	rs192044454	G	A	G	Sox1_MA0870.1	10	1	+	4.519220320573509	-0.048351834999262544	CACTATATGAGTGTT
chr7	46490547	46490548	chr7:46490548:A:G	rs970605	A	G	A	Sox1_MA0870.1	4	1	+	5.796826446052543	-0.9807518081176443	CACAATGTCAATGTA
chr7	46558462	46558463	chr7:46558463:A:G	rs12673331	A	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	46589433	46589434	chr7:46589434:A:G	rs10258175	A	G	A	Sox1_MA0870.1	5	1	-	7.095401870193363	0.19223711154560352	ATAAATATCATTGTT
chr7	46853689	46853690	chr7:46853690:A:C	rs12668566	A	C	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	47139763	47139764	chr7:47139764:A:T	rs1583674	A	T	A	Sox1_MA0870.1	23	0	-	0	0	.
chr7	47248710	47248711	chr7:47248711:G:A	rs6463402	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr7	47277725	47277726	chr7:47277726:G:A	rs3210894	G	A	G	Sox1_MA0870.1	13	1	-	3.320850001293114	5.498505298744108	CACACTAGCATTCCG
chr7	47294048	47294049	chr7:47294049:C:T	rs57198477	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr7	47294059	47294060	chr7:47294060:G:A	rs149268955	G	A	G	Sox1_MA0870.1	13	1	-	8.471055298112667	10.64871059556366	CACACTGTCATTGCA
chr7	47509571	47509572	chr7:47509572:G:A	rs182838	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr7	47683489	47683490	chr7:47683490:T:G	rs28490888	T	G	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	47699955	47699956	chr7:47699956:G:A	rs67043063	G	A	A	Sox1_MA0870.1	2	1	-	6.329856080232576	-0.5788986990826447	AACAGTTACATTGGT
chr7	47722038	47722039	chr7:47722039:T:C	rs4724616	T	C	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	47722079	47722080	chr7:47722080:C:T	rs138722219	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr7	47765017	47765018	chr7:47765018:A:G	rs73097426	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr7	47768460	47768461	chr7:47768461:C:T	rs11971419	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr7	47771702	47771703	chr7:47771703:T:C	rs150187937	T	C	T	Sox1_MA0870.1	1	1	-	5.717142379296881	1.6188517239037408	AATACTTTCATTGTG
chr7	47776804	47776805	chr7:47776805:C:A	rs4339543	C	A	A	Sox1_MA0870.1	16	0	+	0	0	.
chr7	47795184	47795185	chr7:47795185:C:T	rs62448551	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	47969068	47969069	chr7:47969069:A:G	rs3176582	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	48085233	48085234	chr7:48085234:T:C	rs11971012	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr7	48109044	48109045	chr7:48109045:C:T	rs117804121	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr7	48110723	48110724	chr7:48110724:T:C	rs112645772	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr7	48515681	48515682	chr7:48515682:C:G	rs17730353	C	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr7	48515691	48515692	chr7:48515692:A:T	rs77747856	A	T	A	Sox1_MA0870.1	34	0	+	0	0	.
chr7	49024016	49024017	chr7:49024017:C:A	rs7791409	C	A	C	Sox1_MA0870.1	2	1	+	8.010797607488024	1.102042828172804	AACTCTAACAGTGTT
chr7	50369249	50369250	chr7:50369250:A:G	rs12718731	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	50493133	50493134	chr7:50493134:G:T	rs58085392	G	T	G	Sox1_MA0870.1	13	1	-	4.177693290938517	3.0098225618003527	GACACAGACATTGCC
chr7	50578748	50578749	chr7:50578749:G:C	rs1839739	G	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr7	50714742	50714743	chr7:50714743:A:G	rs28470699	A	G	G	Sox1_MA0870.1	20	0	+	0	0	.
chr7	50859077	50859078	chr7:50859078:G:A	rs7789720	G	A	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	51082253	51082254	chr7:51082254:C:T	rs55687834	C	T	C	Sox1_MA0870.1	1	1	-	3.4124737208671654	7.510764376260305	CGCAATATCACTGTG
chr7	51290205	51290206	chr7:51290206:T:C	rs148533647	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	51577519	51577520	chr7:51577520:A:T	rs2079823	A	T	A	Sox1_MA0870.1	24	0	-	0	0	.
chr7	51745796	51745797	chr7:51745797:G:C	rs721113	G	C	G	Sox1_MA0870.1	32	0	-	0	0	.
chr7	51748903	51748904	chr7:51748904:G:A	rs749669540	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	51896078	51896079	chr7:51896079:T:C	rs4947385	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr7	52208998	52208999	chr7:52208999:T:C	rs3935568	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr7	52709662	52709663	chr7:52709663:C:T	rs890636	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr7	52748020	52748021	chr7:52748021:A:G	rs73106268	A	G	G	Sox1_MA0870.1	9	1	+	3.940483062171512	-2.9682717171437103	CACAATAGCATGGAA
chr7	52834703	52834704	chr7:52834704:A:G	rs2965626	A	G	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	53205208	53205209	chr7:53205209:A:T	rs769346	A	T	N	Sox1_MA0870.1	17	0	-	0	0	.
chr7	53595051	53595052	chr7:53595052:A:G	rs17135869	A	G	A	Sox1_MA0870.1	2	1	+	5.233051383630425	5.233051383630425	CAAAATATCATTGCG
chr7	54351327	54351328	chr7:54351328:A:G	rs10249215	A	G	G	Sox1_MA0870.1	7	1	-	4.418187791078143	4.430016843626516	GACATTTTGATTGTT
chr7	54481665	54481666	chr7:54481666:G:A	rs588610	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr7	54810461	54810462	chr7:54810462:A:G	rs1919827	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	54995655	54995656	chr7:54995656:T:C	rs118169376	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	55092289	55092290	chr7:55092290:A:G	rs6972246	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr7	55099451	55099452	chr7:55099452:G:A	rs10225425	G	A	G	Sox1_MA0870.1	8	1	-	6.4281267776775035	2.24651723104022	GACAAGGACATTGTC
chr7	55139167	55139168	chr7:55139168:G:T	rs887824	G	T	G	Sox1_MA0870.1	2	1	-	6.1266268280430065	-0.7821279512722167	GACAATAACGTTGAT
chr7	55167651	55167652	chr7:55167652:C:T	rs73137522	C	T	T	Sox1_MA0870.1	0	1	-	8.499511399223524	9.841634542030278	GCCACTACCATTGTG
chr7	55206390	55206391	chr7:55206391:T:C	rs884225	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr7	55536705	55536706	chr7:55536706:A:C	rs17565995	A	C	A	Sox1_MA0870.1	13	1	+	6.030200972887927	7.198071702026093	AACAATGACACTGAT
chr7	56065510	56065511	chr7:56065511:C:T	rs7793614	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr7	56806631	56806632	chr7:56806632:G:A	rs148648344	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr7	56947915	56947916	chr7:56947916:G:C	rs189304959	G	C	G	Sox1_MA0870.1	3	1	-	4.887899067704643	3.0730743255455923	GCCCATAGCAGTGTT
chr7	57217340	57217341	chr7:57217341:G:T	rs113700686	G	T	-	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	57329003	57329004	chr7:57329004:C:T	rs73699759	C	T	c	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	59241918	59241919	chr7:59241919:T:G	chr7:59241919:T:G	T	G	.	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	59241919	59241920	chr7:59241920:C:G	chr7:59241920:C:G	C	G	.	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	61494619	61494620	chr7:61494620:A:T	rs1462604305	A	T	.	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	61792549	61792550	chr7:61792550:T:C	rs1342040439	T	C	.	Sox1_MA0870.1	8	1	+	4.939043145436008	9.12065269207329	GACAAAAATAGTGTT
chr7	62204282	62204283	chr7:62204283:A:G	rs146310699	A	G	.	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	62227720	62227721	chr7:62227721:C:T	rs9692103	C	T	.	Sox1_MA0870.1	-8	0	-	0	0	.
chr7	64471173	64471174	chr7:64471174:C:A	rs80216832	C	A	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	64999430	64999431	chr7:64999431:C:T	rs73141516	C	T	.	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	64999458	64999459	chr7:64999459:G:A	rs146918419	G	A	.	Sox1_MA0870.1	12	1	+	4.8629111707420325	-2.0458436085731875	AACAATGACAGGGCT
chr7	64999459	64999460	chr7:64999460:C:T	rs114491128	C	T	.	Sox1_MA0870.1	13	1	+	4.8629111707420325	7.040566468193028	AACAATGACAGGGCT
chr7	65237722	65237723	chr7:65237723:G:A	rs580759	G	A	a	Sox1_MA0870.1	10	1	+	4.072564939461554	-0.49500721611121856	CACAATGACAGTCTG
chr7	65791844	65791845	chr7:65791845:G:A	rs56107209	G	A	.	Sox1_MA0870.1	17	0	-	0	0	.
chr7	65811326	65811327	chr7:65811327:G:T	rs34705328	G	T	.	Sox1_MA0870.1	18	0	+	0	0	.
chr7	65882974	65882975	chr7:65882975:A:G	rs73142138	A	G	.	Sox1_MA0870.1	20	0	+	0	0	.
chr7	65896517	65896518	chr7:65896518:G:T	rs139850908	G	T	.	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	66296168	66296169	chr7:66296169:A:G	rs531588938	A	G	a	Sox1_MA0870.1	-16	0	-	0	0	.
chr7	66356244	66356245	chr7:66356245:A:C	rs1009244144	A	C	A	Sox1_MA0870.1	34	0	+	0	0	.
chr7	66630750	66630751	chr7:66630751:A:G	rs1638735	A	G	.	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	66686364	66686365	chr7:66686365:C:G	rs2659916	C	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr7	66843775	66843776	chr7:66843776:G:C	chr7:66843776:G:C	G	C	.	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	66855491	66855492	chr7:66855492:C:T	rs7796977	C	T	.	Sox1_MA0870.1	-3	0	+	0	0	.
chr7	66869777	66869778	chr7:66869778:C:T	rs74457978	C	T	.	Sox1_MA0870.1	15	0	+	0	0	.
chr7	66946792	66946793	chr7:66946793:G:A	rs190352496	G	A	G	Sox1_MA0870.1	12	1	-	3.917607330817736	3.917607330817736	AACACTTACAGTCTG
chr7	67137541	67137542	chr7:67137542:A:G	rs79302106	A	G	A	Sox1_MA0870.1	1	1	+	10.95199141914862	6.853700763755478	AACAATTCCATTGGG
chr7	67267581	67267582	chr7:67267582:T:C	rs62465042	T	C	.	Sox1_MA0870.1	22	0	-	0	0	.
chr7	67307819	67307820	chr7:67307820:G:C	rs117513367	G	C	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	67777688	67777689	chr7:67777689:C:A	rs6970918	C	A	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	67793802	67793803	chr7:67793803:T:A	rs7781614	T	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	68217979	68217980	chr7:68217980:C:T	rs62457276	C	T	C	Sox1_MA0870.1	12	1	-	5.219118611667259	-1.689636167647961	AACACCTCCAGTGTT
chr7	68246243	68246244	chr7:68246244:C:T	rs141665947	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	68265552	68265553	chr7:68265553:T:C	rs3113130	T	C	C	Sox1_MA0870.1	5	1	+	5.972760321853055	-0.930404436794705	TCCACTAGCATTGCC
chr7	68321859	68321860	chr7:68321860:T:C	rs73399849	T	C	T	Sox1_MA0870.1	13	1	+	4.233256619089367	2.0556013216383726	AACAATAACACCGTG
chr7	68364888	68364889	chr7:68364889:G:T	rs13234286	G	T	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	68492240	68492241	chr7:68492241:A:G	rs111066349	A	G	a	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	68560972	68560973	chr7:68560973:G:A	rs10240115	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr7	68996859	68996860	chr7:68996860:T:C	rs6460478	T	C	T	Sox1_MA0870.1	14	1	+	4.082953851798962	2.5719444473175574	GACAATCACATTCTT
chr7	69130789	69130790	chr7:69130790:C:T	rs58227663	C	T	T	Sox1_MA0870.1	7	1	+	3.734644949110906	3.722815896562533	GCCAATGCCATTTTT
chr7	69361111	69361112	chr7:69361112:G:A	rs73700742	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr7	70004887	70004888	chr7:70004888:G:A	rs7800317	G	A	G	Sox1_MA0870.1	3	1	-	5.236277513447935	4.807747132408775	GACCATGTCATTGCA
chr7	70063593	70063594	chr7:70063594:G:A	rs17365011	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	70387780	70387781	chr7:70387781:T:C	rs75501049	T	C	T	Sox1_MA0870.1	5	1	+	7.540587905880486	0.6374231472327265	CTCAATGTCATTGCC
chr7	70566285	70566286	chr7:70566286:T:C	rs2189962	T	C	C	Sox1_MA0870.1	5	1	+	8.0713904820845	1.1682257234367412	AACATTTACATTGTA
chr7	70867712	70867713	chr7:70867713:C:T	rs7798255	C	T	T	Sox1_MA0870.1	24	0	+	0	0	.
chr7	71173295	71173296	chr7:71173296:T:C	rs10215771	T	C	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	71264464	71264465	chr7:71264465:A:G	rs1882571	A	G	A	Sox1_MA0870.1	10	1	-	5.774763778320832	-1.033933305815502	AGCACTAGGATTGTG
chr7	71402758	71402759	chr7:71402759:A:C	rs34419262	A	C	A	Sox1_MA0870.1	9	1	+	12.594335472636715	5.685580693321494	CACACTGGCATTGTT
chr7	71439444	71439445	chr7:71439445:T:G	rs73175291	T	G	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	71527344	71527345	chr7:71527345:C:T	rs12699049	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr7	71535627	71535628	chr7:71535628:C:T	rs57707559	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr7	71535628	71535629	chr7:71535629:T:G	rs6460664	T	G	G	Sox1_MA0870.1	31	0	+	0	0	.
chr7	71739538	71739539	chr7:71739539:T:C	rs73177692	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	71762738	71762739	chr7:71762739:C:G	rs2079965	C	G	G	Sox1_MA0870.1	0	1	+	5.507604359079508	5.401778564827735	CTCAAAATCAGTGTT
chr7	71931993	71931994	chr7:71931994:T:C	rs73185100	T	C	T	Sox1_MA0870.1	6	1	-	3.477643074084708	1.9390363809439894	CACACCAGCAGTGTC
chr7	71949130	71949131	chr7:71949131:A:C	rs10215280	A	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr7	72542865	72542866	chr7:72542866:G:A	rs10229194	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	73626936	73626937	chr7:73626937:A:G	rs34958022	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	73787626	73787627	chr7:73787627:G:T	rs59773062	G	T	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	74104767	74104768	chr7:74104768:A:G	rs77474392	A	G	A	Sox1_MA0870.1	5	1	-	4.247166681549853	-2.6559980770979075	CACAATTGCAGGGTG
chr7	74104768	74104769	chr7:74104769:T:C	rs1021926459	T	C	T	Sox1_MA0870.1	4	1	-	4.247166681549853	-2.5304115726203364	CACAATTGCAGGGTG
chr7	74175111	74175112	chr7:74175112:A:G	rs376741021	A	G	A	Sox1_MA0870.1	9	1	+	5.985684755634227	-0.9230700236809938	CACAATTTCATTTCT
chr7	74340418	74340419	chr7:74340419:G:A	rs2261353	G	A	A	Sox1_MA0870.1	12	1	+	4.930603342238284	-1.9781514370769364	AATAATAACAGTGGT
chr7	74431175	74431176	chr7:74431176:C:T	rs117290807	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr7	74572746	74572747	chr7:74572747:A:G	rs139526014	A	G	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	74628494	74628495	chr7:74628495:A:C	rs111361634	A	C	A	Sox1_MA0870.1	7	1	-	3.7737417773493735	3.8183533296372794	ACCACTTTCAATGTT
chr7	74988728	74988729	chr7:74988729:C:T	rs587657421	C	T	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr7	75743660	75743661	chr7:75743661:T:C	rs1859293	T	C	C	Sox1_MA0870.1	14	1	+	4.123039104271803	2.6120296997903987	CTTAATAACATTGCT
chr7	76300408	76300409	chr7:76300409:A:G	chr7:76300409:A:G	A	G	A	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	76325414	76325415	chr7:76325415:C:G	rs113060618	C	G	C	Sox1_MA0870.1	18	0	+	0	0	.
chr7	76599823	76599824	chr7:76599824:A:G	rs10258554	A	G	a	Sox1_MA0870.1	5	1	+	5.596643216526202	3.7126084711889766	AACAAATTTATTGTC
chr7	77152933	77152934	chr7:77152934:A:C	rs144455686	A	C	A	Sox1_MA0870.1	1	1	+	4.431496992688516	0.6623566078440191	CACAATAACACTGAA
chr7	77253319	77253320	chr7:77253320:A:T	rs117334834	A	T	A	Sox1_MA0870.1	21	0	-	0	0	.
chr7	77253339	77253340	chr7:77253340:T:C	rs4729254	T	C	T	Sox1_MA0870.1	1	1	-	5.924470513670362	1.8261798582772193	GACAATTGCATTCCT
chr7	77450743	77450744	chr7:77450744:C:A	rs1017036	C	A	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	77528472	77528473	chr7:77528473:T:C	rs79061270	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr7	77759150	77759151	chr7:77759151:C:A	rs13229008	C	A	C	Sox1_MA0870.1	31	0	+	0	0	.
chr7	77771989	77771990	chr7:77771990:T:C	rs6465816	T	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	78060082	78060083	chr7:78060083:G:T	rs3823800	G	T	T	Sox1_MA0870.1	12	1	+	6.979305540630419	0.07055076131519866	CACAATTACAATGTG
chr7	78090844	78090845	chr7:78090845:T:G	rs73362682	T	G	T	Sox1_MA0870.1	9	1	+	3.7601435517239823	3.7601435517239823	AACCATGCCTTTGTT
chr7	78130649	78130650	chr7:78130650:G:C	rs986880	G	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	78413751	78413752	chr7:78413752:A:G	rs138417935	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	78449107	78449108	chr7:78449108:C:A	rs117460038	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	78471039	78471040	chr7:78471040:A:G	rs10235821	A	G	A	Sox1_MA0870.1	9	1	+	5.790794260232365	-1.1179605190828545	AACATTTATATTGTT
chr7	78479555	78479556	chr7:78479556:T:C	rs79887236	T	C	T	Sox1_MA0870.1	10	1	+	5.049067855287232	-1.759629228849101	AAAAATAGCATTGGG
chr7	78530483	78530484	chr7:78530484:C:G	rs1000796835	C	G	C	Sox1_MA0870.1	10	1	-	5.831434336506433	1.2638621809336592	CACAAGAACAGTGTC
chr7	78850423	78850424	chr7:78850424:T:G	rs576744	T	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	79145623	79145624	chr7:79145624:A:G	chr7:79145624:A:G	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr7	79333997	79333998	chr7:79333998:C:T	rs1528264	C	T	T	Sox1_MA0870.1	30	0	-	0	0	.
chr7	79452939	79452940	chr7:79452940:T:A	rs114233436	T	A	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr7	79820593	79820594	chr7:79820594:C:T	rs74984194	C	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	79897405	79897406	chr7:79897406:A:G	rs73370529	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	79897416	79897417	chr7:79897417:C:A	rs75060282	C	A	C	Sox1_MA0870.1	2	1	+	5.710972699707803	-1.1977820796074177	AACAATTTCATTTCC
chr7	80027347	80027348	chr7:80027348:G:A	rs117944463	G	A	G	Sox1_MA0870.1	12	1	+	3.739777110651108	-3.1689776686641125	AACAGTAGCAATGTT
chr7	80027752	80027753	chr7:80027753:A:G	rs17153254	A	G	A	Sox1_MA0870.1	1	1	+	5.515979413860897	1.4176887584677562	TACACTTCCCTTGTT
chr7	80185802	80185803	chr7:80185803:A:C	rs62462670	A	C	A	Sox1_MA0870.1	4	1	+	6.801267098532561	4.844454163907344	GAAAATACCAGTGTT
chr7	80233553	80233554	chr7:80233554:C:G	rs4731301	C	G	C	Sox1_MA0870.1	21	0	-	0	0	.
chr7	80279901	80279902	chr7:80279902:C:G	rs762929011	C	G	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	80324020	80324021	chr7:80324021:A:C	rs570591990	A	C	A	Sox1_MA0870.1	14	1	-	4.264589316322689	2.5389072286045855	TCCATTTACATTGTT
chr7	80480958	80480959	chr7:80480959:C:T	rs75068980	C	T	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	80549297	80549298	chr7:80549298:C:T	rs112905381	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	80620002	80620003	chr7:80620003:G:A	rs6960369	G	A	G	Sox1_MA0870.1	13	1	-	5.2651691695639915	7.442824467014985	AACACTTTCTTTGCT
chr7	80636751	80636752	chr7:80636752:A:G	rs1334511	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr7	80740854	80740855	chr7:80740855:G:A	rs34917802	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr7	80852065	80852066	chr7:80852066:C:T	rs17154550	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr7	80852090	80852091	chr7:80852091:G:A	rs368226677	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	80968207	80968208	chr7:80968208:T:A	rs76829266	T	A	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	80992266	80992267	chr7:80992267:G:A	rs853045	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr7	81342038	81342039	chr7:81342039:A:C	rs17551973	A	C	A	Sox1_MA0870.1	31	0	-	0	0	.
chr7	81604167	81604168	chr7:81604168:C:T	rs564395731	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	81605582	81605583	chr7:81605583:A:C	rs76702992	A	C	A	Sox1_MA0870.1	18	0	+	0	0	.
chr7	81630716	81630717	chr7:81630717:T:A	rs3926968	T	A	T	Sox1_MA0870.1	7	1	+	6.030601034262892	6.472190914347307	AACTCTGTCAGTGTT
chr7	81630720	81630721	chr7:81630721:T:A	rs3926969	T	A	T	Sox1_MA0870.1	11	1	+	6.030601034262892	-0.8721316525939399	AACTCTGTCAGTGTT
chr7	81676989	81676990	chr7:81676990:A:T	chr7:81676990:A:T	A	T	A	Sox1_MA0870.1	23	0	+	0	0	.
chr7	82128410	82128411	chr7:82128411:G:A	rs258692	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr7	82506563	82506564	chr7:82506564:C:T	rs73374483	C	T	c	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	82756415	82756416	chr7:82756416:G:T	rs1859174	G	T	.	Sox1_MA0870.1	17	0	-	0	0	.
chr7	82803225	82803226	chr7:82803226:T:C	rs7782310	T	C	T	Sox1_MA0870.1	14	1	-	4.443726106611856	4.6190573436789	CACTCTACCAGTGTA
chr7	83226078	83226079	chr7:83226079:T:C	rs6968875	T	C	C	Sox1_MA0870.1	7	1	-	3.336757813993346	2.9397794861968394	CACAATTACAATGGG
chr7	83268019	83268020	chr7:83268020:G:A	rs17289395	G	A	G	Sox1_MA0870.1	13	1	-	5.060752150435775	7.238407447886768	ATCATTACCATTGCT
chr7	83271586	83271587	chr7:83271587:T:C	rs61124199	T	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	83586368	83586369	chr7:83586369:A:G	chr7:83586369:A:G	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr7	83879244	83879245	chr7:83879245:A:G	chr7:83879245:A:G	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	83879257	83879258	chr7:83879258:A:G	rs17158309	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	84040284	84040285	chr7:84040285:A:G	rs4732536	A	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr7	84081059	84081060	chr7:84081060:G:A	rs62473957	G	A	g	Sox1_MA0870.1	1	1	-	5.1127551076962785	5.604611245379637	ACCTCTTGCATTGTT
chr7	84145638	84145639	chr7:84145639:C:G	chr7:84145639:C:G	C	G	C	Sox1_MA0870.1	15	0	-	0	0	.
chr7	84246240	84246241	chr7:84246241:C:G	rs144033399	C	G	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	84246256	84246257	chr7:84246257:G:A	rs56021068	G	A	g	Sox1_MA0870.1	9	1	+	7.460963295937741	14.369718075252962	TACAATTTCGTTGTT
chr7	84250653	84250654	chr7:84250654:C:A	rs998807496	C	A	C	Sox1_MA0870.1	17	0	-	0	0	.
chr7	84468259	84468260	chr7:84468260:G:T	rs78447225	G	T	G	Sox1_MA0870.1	18	0	-	0	0	.
chr7	85060676	85060677	chr7:85060677:A:T	rs2286190	A	T	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	85336476	85336477	chr7:85336477:A:T	rs2696173	A	T	A	Sox1_MA0870.1	10	1	-	5.369719782475258	-1.4389773016610747	ATCAATATCATTTTG
chr7	85384639	85384640	chr7:85384640:A:G	rs10234933	A	G	A	Sox1_MA0870.1	9	1	+	8.89955707260173	1.9908022932865088	AGCAATTACAGTGTC
chr7	85384641	85384642	chr7:85384642:T:C	rs2030624	T	C	T	Sox1_MA0870.1	11	1	+	8.89955707260173	3.9441620867913953	AGCAATTACAGTGTC
chr7	85587748	85587749	chr7:85587749:C:A	rs182264820	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	85635229	85635230	chr7:85635230:A:G	rs4604361	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr7	85873661	85873662	chr7:85873662:C:T	rs12154445	C	T	C	Sox1_MA0870.1	10	1	-	6.014038223121234	1.4464660675484602	AACAATCACAGTGCA
chr7	85997644	85997645	chr7:85997645:G:C	rs557416436	G	C	G	Sox1_MA0870.1	21	0	+	0	0	.
chr7	86174220	86174221	chr7:86174221:G:A	rs116270520	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	86211916	86211917	chr7:86211917:T:C	rs75215319	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	86347627	86347628	chr7:86347628:T:C	rs9640570	T	C	C	Sox1_MA0870.1	1	1	-	4.824687278522416	0.7263966231292733	TACAAAAGCATTGGA
chr7	86442653	86442654	chr7:86442654:C:T	rs13245412	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr7	86505459	86505460	chr7:86505460:T:C	rs183367848	T	C	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	86642977	86642978	chr7:86642978:C:T	rs166677	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr7	86648317	86648318	chr7:86648318:T:C	rs701332	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr7	86780722	86780723	chr7:86780723:G:C	rs6970642	G	C	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	86913679	86913680	chr7:86913680:C:T	rs11981220	C	T	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	86993466	86993467	chr7:86993467:T:C	rs1767697	T	C	T	Sox1_MA0870.1	11	1	+	8.445841064200415	3.490446078390082	TACAATACCATTATT
chr7	87767902	87767903	chr7:87767903:A:G	rs189990168	A	G	a	Sox1_MA0870.1	10	1	-	3.336161795638917	-3.4725352884974154	CTCAGTTGCATTGTG
chr7	88311895	88311896	chr7:88311896:A:G	rs55751897	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	88317661	88317662	chr7:88317662:G:A	rs916849	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	88363450	88363451	chr7:88363451:A:C	rs11762499	A	C	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	88523084	88523085	chr7:88523085:G:A	rs62461983	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	88523867	88523868	chr7:88523868:G:A	rs141420755	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	89680614	89680615	chr7:89680615:C:T	rs10952962	C	T	T	Sox1_MA0870.1	4	1	+	10.68722305290964	5.866457733364669	TACACTTTCATTGTG
chr7	89680631	89680632	chr7:89680632:T:C	rs10261097	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr7	89966639	89966640	chr7:89966640:A:G	rs10487089	A	G	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	90295913	90295914	chr7:90295914:T:C	rs17866067	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	90886717	90886718	chr7:90886718:C:G	rs12537076	C	G	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	90917803	90917804	chr7:90917804:G:A	rs78194207	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	91043588	91043589	chr7:91043589:G:T	rs34435827	G	T	G	Sox1_MA0870.1	26	0	-	0	0	.
chr7	91195014	91195015	chr7:91195015:T:C	rs1036172773	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	91290251	91290252	chr7:91290252:C:A	rs1346665	C	A	A	Sox1_MA0870.1	16	0	+	0	0	.
chr7	91461464	91461465	chr7:91461465:T:C	rs4076028	T	C	T	Sox1_MA0870.1	0	1	-	5.633121577661125	4.290998434854372	AAGAATGACATTGGT
chr7	91517775	91517776	chr7:91517776:T:C	rs7784138	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	91565614	91565615	chr7:91565615:C:T	rs2110769	C	T	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	91657600	91657601	chr7:91657601:A:G	rs113556641	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr7	91685648	91685649	chr7:91685649:C:T	rs705364	C	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	91692299	91692300	chr7:91692300:T:C	rs1916600	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	91916412	91916413	chr7:91916413:C:T	rs7812219	C	T	T	Sox1_MA0870.1	10	1	-	3.7634106220463392	-0.804161533526434	CACCCTGACAGTGTA
chr7	92644915	92644916	chr7:92644916:C:T	rs117751067	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr7	92644936	92644937	chr7:92644937:T:G	rs6954434	T	G	T	Sox1_MA0870.1	18	0	+	0	0	.
chr7	92731482	92731483	chr7:92731483:G:A	rs60683232	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	92795517	92795518	chr7:92795518:T:C	rs539087741	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	92855012	92855013	chr7:92855013:G:A	rs28718888	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr7	92987653	92987654	chr7:92987654:C:T	rs17699960	C	T	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr7	93014062	93014063	chr7:93014063:A:G	rs6948574	A	G	G	Sox1_MA0870.1	23	0	+	0	0	.
chr7	93117647	93117648	chr7:93117648:C:T	rs10233715	C	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	93142385	93142386	chr7:93142386:G:T	rs948146819	G	T	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	93723667	93723668	chr7:93723668:G:A	rs2677057	G	A	G	Sox1_MA0870.1	7	1	+	5.793812713937266	6.190791041733773	GACACATGCAGTGTT
chr7	93923188	93923189	chr7:93923189:A:G	rs7785521	A	G	A	Sox1_MA0870.1	10	1	-	4.326684626470008	-2.482012457666325	TTCATTTCCATTGTT
chr7	94052872	94052873	chr7:94052873:A:G	rs17306186	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	94059651	94059652	chr7:94059652:A:G	rs41532	A	G	a	Sox1_MA0870.1	34	0	+	0	0	.
chr7	94158100	94158101	chr7:94158101:C:A	rs7357193	C	A	A	Sox1_MA0870.1	13	1	+	7.028679407931711	5.860808678793546	GACAAAACCATTGCG
chr7	94216949	94216950	chr7:94216950:A:T	rs17166100	A	T	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr7	94241134	94241135	chr7:94241135:G:A	rs6959259	G	A	A	Sox1_MA0870.1	7	1	-	6.978722529777562	6.966893477229188	CCCAATGCGATTGTT
chr7	94275050	94275051	chr7:94275051:G:T	chr7:94275051:G:T	G	T	G	Sox1_MA0870.1	12	1	+	7.558271062496683	0.6495162831814628	TACCATTTCATTGTG
chr7	94334007	94334008	chr7:94334008:G:A	rs1557657	G	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	94368907	94368908	chr7:94368908:A:G	rs10487253	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	94403440	94403441	chr7:94403441:A:G	rs1858822	A	G	A	Sox1_MA0870.1	26	0	-	0	0	.
chr7	94404487	94404488	chr7:94404488:A:G	rs406226	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr7	94426620	94426621	chr7:94426621:T:C	rs13240759	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	94633984	94633985	chr7:94633985:A:G	rs147103554	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr7	94656119	94656120	chr7:94656120:C:G	rs745436141	C	G	C	Sox1_MA0870.1	32	0	+	0	0	.
chr7	94922752	94922753	chr7:94922753:T:C	rs547444502	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr7	95210131	95210132	chr7:95210132:T:G	rs11762113	T	G	T	Sox1_MA0870.1	0	1	+	6.300968266488954	6.897519229384662	TACAATAGCATTTCT
chr7	95425027	95425028	chr7:95425028:T:C	rs11981433	T	C	T	Sox1_MA0870.1	5	1	+	5.358912536243944	-1.544252222403815	GAAAATGGCATTGCT
chr7	95560935	95560936	chr7:95560936:G:T	rs916711	G	T	G	Sox1_MA0870.1	4	1	-	4.075719902081082	6.032532836706298	GACACTGACCTTGTA
chr7	95582330	95582331	chr7:95582331:T:A	rs7811683	T	A	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	95611422	95611423	chr7:95611423:C:A	rs7787663	C	A	C	Sox1_MA0870.1	27	0	-	0	0	.
chr7	95611434	95611435	chr7:95611435:C:T	rs112988987	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr7	95630299	95630300	chr7:95630300:T:C	rs7777424	T	C	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	95775259	95775260	chr7:95775260:G:A	rs1382620	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	96035309	96035310	chr7:96035310:T:C	rs7796312	T	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	96052962	96052963	chr7:96052963:T:G	rs2299282	T	G	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	96397067	96397068	chr7:96397068:A:G	rs11760823	A	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr7	96400698	96400699	chr7:96400699:A:G	rs7784197	A	G	A	Sox1_MA0870.1	13	1	-	4.113911354199063	1.9362560567480684	AACACTTAGGTTGTT
chr7	96832336	96832337	chr7:96832337:T:C	rs1947228	T	C	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	96833765	96833766	chr7:96833766:C:T	rs576129699	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr7	96992694	96992695	chr7:96992695:A:C	rs3815195	A	C	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	97399951	97399952	chr7:97399952:T:C	rs79552220	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr7	98132119	98132120	chr7:98132120:A:G	rs114803676	A	G	A	Sox1_MA0870.1	10	1	-	7.094125464471521	0.28542838033518647	GACACTCCCATTGTC
chr7	98132131	98132132	chr7:98132132:A:G	rs377045372	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	98163259	98163260	chr7:98163260:C:T	rs116212815	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	98360739	98360740	chr7:98360740:C:T	rs185163839	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	98497684	98497685	chr7:98497685:T:A	rs28635326	T	A	A	Sox1_MA0870.1	16	0	+	0	0	.
chr7	98623306	98623307	chr7:98623307:C:T	rs75306184	C	T	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	98810134	98810135	chr7:98810135:C:T	rs10245517	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr7	98842076	98842077	chr7:98842077:T:C	rs4368910	T	C	C	Sox1_MA0870.1	5	1	+	3.9236294232761253	-2.979535335371635	AACACTTACAGGGTG
chr7	98942499	98942500	chr7:98942500:T:C	rs2237598	T	C	C	Sox1_MA0870.1	9	1	-	12.570183026773815	5.661428247458595	TACAATTACAGTGTT
chr7	99003596	99003597	chr7:99003597:A:G	rs563675641	A	G	A	Sox1_MA0870.1	3	1	+	4.370699401453032	-2.529890265744195	CTCAACGGCATTGTT
chr7	99003620	99003621	chr7:99003621:T:C	rs73161950	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr7	99750704	99750705	chr7:99750705:T:C	rs6945984	T	C	C	Sox1_MA0870.1	5	1	+	6.964161018338215	0.0609962596904543	TACACTAGCATCGTC
chr7	100375778	100375779	chr7:100375779:G:A	rs6965458	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	100803031	100803032	chr7:100803032:G:C	rs56326327	G	C	G	Sox1_MA0870.1	24	0	-	0	0	.
chr7	101032694	101032695	chr7:101032695:G:A	rs56103274	G	A	-	Sox1_MA0870.1	8	1	-	4.269608506268179	0.08799895963089754	TTCACTAGCAGTGGT
chr7	101593925	101593926	chr7:101593926:G:A	rs12113459	G	A	g	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	101788256	101788257	chr7:101788257:A:G	rs2529214	A	G	g	Sox1_MA0870.1	25	0	-	0	0	.
chr7	101837916	101837917	chr7:101837917:C:T	rs2906745	C	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	101858268	101858269	chr7:101858269:C:T	rs76653084	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	101863181	101863182	chr7:101863182:A:G	rs75577283	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr7	101933757	101933758	chr7:101933758:T:C	rs2906649	T	C	T	Sox1_MA0870.1	11	1	+	4.077882085685708	-0.8775129001246255	AGAAATAGCAGTGTT
chr7	102105269	102105270	chr7:102105270:G:A	rs201484	G	A	G	Sox1_MA0870.1	0	1	-	3.7259883349702836	3.0236115778228023	CCCACTGAGATTGTG
chr7	102106410	102106411	chr7:102106411:G:T	rs10271376	G	T	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	102431829	102431830	chr7:102431830:T:C	rs186356521	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	102856146	102856147	chr7:102856147:G:T	rs2215040	G	T	T	Sox1_MA0870.1	8	1	+	7.321930835191486	6.9108242814545395	TTCAATTTGATTGTT
chr7	102933856	102933857	chr7:102933857:A:G	chr7:102933857:A:G	A	G	A	Sox1_MA0870.1	0	1	+	7.442824467014985	6.100701324208231	AATACTTTCATTGTT
chr7	102943565	102943566	chr7:102943566:A:G	rs13242493	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr7	102993467	102993468	chr7:102993468:A:G	rs57734320	A	G	a	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	102994732	102994733	chr7:102994733:T:C	rs149131375	T	C	t	Sox1_MA0870.1	-1	0	+	0	0	.
chr7	103133772	103133773	chr7:103133773:T:C	rs79775118	T	C	t	Sox1_MA0870.1	3	1	-	4.756445454006049	-2.144144213191178	TTCATTTACATTGTT
chr7	103167239	103167240	chr7:103167240:G:A	rs76284802	G	A	g	Sox1_MA0870.1	18	0	-	0	0	.
chr7	103167240	103167241	chr7:103167241:C:T	rs77438725	C	T	c	Sox1_MA0870.1	17	0	-	0	0	.
chr7	103349278	103349279	chr7:103349279:T:G	rs17136728	T	G	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	103598696	103598697	chr7:103598697:T:C	rs362672	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr7	103614475	103614476	chr7:103614476:T:C	rs147883951	T	C	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	104231080	104231081	chr7:104231081:G:T	rs6971455	G	T	G	Sox1_MA0870.1	15	0	-	0	0	.
chr7	104706864	104706865	chr7:104706865:A:G	rs6966224	A	G	a	Sox1_MA0870.1	4	1	+	8.175169105633595	1.3975908514634061	CACAATTCCATTCTT
chr7	104782956	104782957	chr7:104782957:C:T	rs140513734	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr7	104958000	104958001	chr7:104958001:T:C	rs6466030	T	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr7	105012287	105012288	chr7:105012288:C:T	rs77205034	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr7	105049294	105049295	chr7:105049295:T:C	rs960437	T	C	C	Sox1_MA0870.1	10	1	+	3.481782483046043	-3.326914601090289	AAAAATACCATAGTT
chr7	105204747	105204748	chr7:105204748:A:C	rs2237612	A	C	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	105512743	105512744	chr7:105512744:C:T	rs711433	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	105771633	105771634	chr7:105771634:T:C	rs1204376	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr7	105831664	105831665	chr7:105831665:T:C	rs367794143	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr7	105910464	105910465	chr7:105910465:C:A	rs73408379	C	A	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	105933796	105933797	chr7:105933797:G:A	rs7780301	G	A	G	Sox1_MA0870.1	5	1	-	3.4500457854253943	10.353210544073153	CACACCGGCAGTGTT
chr7	106049469	106049470	chr7:106049470:C:T	rs58630275	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	106118044	106118045	chr7:106118045:T:G	rs12668312	T	G	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	106157458	106157459	chr7:106157459:T:C	rs176526	T	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	106163239	106163240	chr7:106163240:T:A	rs176556	T	A	T	Sox1_MA0870.1	15	0	+	0	0	.
chr7	106239020	106239021	chr7:106239021:T:G	rs17372315	T	G	T	Sox1_MA0870.1	15	0	+	0	0	.
chr7	106345497	106345498	chr7:106345498:G:A	rs6973843	G	A	G	Sox1_MA0870.1	12	1	+	5.617571370176543	-1.2911834091386774	TGCAATAGGATTGTA
chr7	106380807	106380808	chr7:106380808:G:A	rs179883	G	A	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr7	106421710	106421711	chr7:106421711:T:C	rs11772805	T	C	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	106447453	106447454	chr7:106447454:C:T	rs73413922	C	T	c	Sox1_MA0870.1	20	0	-	0	0	.
chr7	106682180	106682181	chr7:106682181:T:C	rs78560642	T	C	T	Sox1_MA0870.1	15	0	-	0	0	.
chr7	106781269	106781270	chr7:106781270:A:G	rs73186244	A	G	A	Sox1_MA0870.1	11	1	-	8.157731843087571	3.20233685727724	CTCAATTACATTGCA
chr7	107139034	107139035	chr7:107139035:C:T	rs11760261	C	T	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	107507084	107507085	chr7:107507085:C:A	rs11974387	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr7	107738674	107738675	chr7:107738675:G:T	rs2395886	G	T	G	Sox1_MA0870.1	12	1	-	4.080323912903308	4.080323912903308	GACAATTACAGTCCT
chr7	107860467	107860468	chr7:107860468:A:G	rs2108228	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr7	107860513	107860514	chr7:107860514:A:G	rs79720348	A	G	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	108099908	108099909	chr7:108099909:T:C	rs73197610	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr7	108181951	108181952	chr7:108181952:G:A	rs2142325	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr7	108203503	108203504	chr7:108203504:A:G	rs10953560	A	G	A	Sox1_MA0870.1	6	1	+	10.367077907356855	8.828471214216137	ATCAATAACATTGCA
chr7	108232371	108232372	chr7:108232372:G:A	rs2072546	G	A	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	108398621	108398622	chr7:108398622:A:C	rs75795574	A	C	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	108440859	108440860	chr7:108440860:T:C	rs16872572	T	C	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr7	109059856	109059857	chr7:109059857:T:C	rs1996146	T	C	T	Sox1_MA0870.1	7	1	-	4.21297496434627	3.8159966365497633	GACCATGACATTGGA
chr7	109129370	109129371	chr7:109129371:A:G	rs74301807	A	G	A	Sox1_MA0870.1	9	1	+	6.4565127458191345	-0.4522420334960867	AACAATAGCAGAGTG
chr7	109467793	109467794	chr7:109467794:G:T	rs549879585	G	T	g	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	109694312	109694313	chr7:109694313:C:T	rs7801297	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	109713708	109713709	chr7:109713709:C:T	rs62478871	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr7	109953745	109953746	chr7:109953746:C:T	rs6960389	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr7	110017513	110017514	chr7:110017514:T:C	rs184800515	T	C	T	Sox1_MA0870.1	33	0	+	0	0	.
chr7	110084674	110084675	chr7:110084675:T:C	rs1815112	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	110156724	110156725	chr7:110156725:A:G	rs1722061	A	G	G	Sox1_MA0870.1	29	0	-	0	0	.
chr7	110187580	110187581	chr7:110187581:G:T	rs1722089	G	T	G	Sox1_MA0870.1	31	0	-	0	0	.
chr7	110507687	110507688	chr7:110507688:A:C	rs10255144	A	C	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	110539732	110539733	chr7:110539733:A:G	rs55735006	A	G	A	Sox1_MA0870.1	10	1	-	11.726568805811283	4.917871721674949	CACAATTTCATTGAT
chr7	110733253	110733254	chr7:110733254:A:T	rs7802317	A	T	A	Sox1_MA0870.1	34	0	-	0	0	.
chr7	111076782	111076783	chr7:111076783:C:T	rs117677570	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	111474744	111474745	chr7:111474745:T:C	rs76306865	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	111476054	111476055	chr7:111476055:C:A	chr7:111476055:C:A	C	A	C	Sox1_MA0870.1	19	0	+	0	0	.
chr7	111711455	111711456	chr7:111711456:T:C	rs10487331	T	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr7	111941881	111941882	chr7:111941882:A:G	rs17159028	A	G	G	Sox1_MA0870.1	11	1	-	4.011432961237215	-0.9439620245731183	GACAAAATCCTTGTT
chr7	112019029	112019030	chr7:112019030:T:C	rs74947312	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	112025502	112025503	chr7:112025503:G:A	rs1468207	G	A	A	Sox1_MA0870.1	10	1	+	5.843525639685506	1.2759534841127338	AACTCTATCAGTGTG
chr7	112291317	112291318	chr7:112291318:G:T	rs56675883	G	T	G	Sox1_MA0870.1	15	0	+	0	0	.
chr7	112356896	112356897	chr7:112356897:T:C	rs12113634	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	112485043	112485044	chr7:112485044:G:A	rs3095028	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr7	112668758	112668759	chr7:112668759:A:G	rs73436447	A	G	A	Sox1_MA0870.1	11	1	-	6.654380329947613	1.6989853441372784	GCCAATGACAGTGCT
chr7	112709746	112709747	chr7:112709747:C:T	rs10261844	C	T	c	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	112874066	112874067	chr7:112874067:C:T	rs10277476	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	112916267	112916268	chr7:112916268:T:C	rs549688	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr7	113968787	113968788	chr7:113968788:C:G	rs4730613	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	114112853	114112854	chr7:114112854:C:T	rs1839563	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr7	114315105	114315106	chr7:114315106:T:C	rs1482480130	T	C	T	Sox1_MA0870.1	13	1	-	4.3423457665951855	4.045324066547272	CACAAAGACAGTGAT
chr7	114484604	114484605	chr7:114484605:C:G	rs6974757	C	G	G	Sox1_MA0870.1	29	0	+	0	0	.
chr7	114574653	114574654	chr7:114574654:G:C	rs12667021	G	C	G	Sox1_MA0870.1	17	0	-	0	0	.
chr7	114660661	114660662	chr7:114660662:T:C	rs12154391	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	114882142	114882143	chr7:114882143:T:G	rs4730652	T	G	G	Sox1_MA0870.1	6	1	-	7.3113066386243215	1.9221076357911202	AGCAATACCAGTGGT
chr7	115054607	115054608	chr7:115054608:T:C	rs2709480	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr7	115075249	115075250	chr7:115075250:C:G	rs78647047	C	G	C	Sox1_MA0870.1	30	0	+	0	0	.
chr7	115274450	115274451	chr7:115274451:A:G	rs10274638	A	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr7	115288122	115288123	chr7:115288123:A:G	rs13224705	A	G	G	Sox1_MA0870.1	0	1	+	4.908592384232534	3.5664692414257813	AACTAGAGCATTGTT
chr7	115510112	115510113	chr7:115510113:G:A	rs4329220	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr7	115779829	115779830	chr7:115779830:T:C	rs76935609	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	115813615	115813616	chr7:115813616:T:C	rs77695440	T	C	T	Sox1_MA0870.1	29	0	-	0	0	.
chr7	115842977	115842978	chr7:115842978:T:C	rs10267313	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr7	116180504	116180505	chr7:116180505:A:C	rs73454551	A	C	A	Sox1_MA0870.1	33	0	+	0	0	.
chr7	116584780	116584781	chr7:116584781:A:G	rs6466590	A	G	A	Sox1_MA0870.1	4	1	-	6.061319802854072	10.882085122399044	AACATTGACATTGAT
chr7	116765332	116765333	chr7:116765333:T:C	rs2237717	T	C	C	Sox1_MA0870.1	1	1	-	11.006053219741048	6.907762564347905	AACACTTTCATTGAT
chr7	116778152	116778153	chr7:116778153:A:C	rs563631358	A	C	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	116783106	116783107	chr7:116783107:G:A	rs2073560	G	A	G	Sox1_MA0870.1	14	1	-	4.3760579847040795	5.887067389185485	GACATTGACATTGCC
chr7	116786964	116786965	chr7:116786965:A:G	rs2283053	A	G	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	117250831	117250832	chr7:117250832:C:T	rs38903	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr7	117716118	117716119	chr7:117716119:A:T	rs148638862	A	T	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	117812167	117812168	chr7:117812168:A:G	rs10248793	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	118245459	118245460	chr7:118245460:A:G	rs17141135	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr7	118286035	118286036	chr7:118286036:A:T	rs75024620	A	T	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	118859208	118859209	chr7:118859209:A:G	rs13228009	A	G	A	Sox1_MA0870.1	9	1	+	9.995275536760156	3.0865207574449345	CTCAATTACAGTGTT
chr7	119320592	119320593	chr7:119320593:A:G	rs3103360	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	119565686	119565687	chr7:119565687:G:A	rs73719951	G	A	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr7	119565687	119565688	chr7:119565688:C:T	rs73719952	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	119943913	119943914	chr7:119943914:C:T	rs59779536	C	T	C	Sox1_MA0870.1	12	1	-	4.647890611891272	-2.260864167423948	CACAAAAGTAGTGTT
chr7	120282609	120282610	chr7:120282610:A:G	rs184164946	A	G	A	Sox1_MA0870.1	9	1	+	5.567736646064611	-1.3410181332506108	AAAAATAACATTGAA
chr7	120402032	120402033	chr7:120402033:G:T	rs66843006	G	T	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	120583029	120583030	chr7:120583030:A:G	rs10262476	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	121007063	121007064	chr7:121007064:T:C	rs12112966	T	C	T	Sox1_MA0870.1	9	1	-	5.803837047847118	-1.1049177314681011	CACAAGGACAGTGTT
chr7	121081579	121081580	chr7:121081580:G:A	rs151209936	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr7	121212138	121212139	chr7:121212139:T:C	rs1357756	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr7	121305273	121305274	chr7:121305274:T:C	rs1547959	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr7	121344053	121344054	chr7:121344054:T:G	rs71571022	T	G	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	121441646	121441647	chr7:121441647:T:C	rs6466787	T	C	C	Sox1_MA0870.1	14	1	+	9.395199614230334	7.88419020974893	TACAAATGCATTGTT
chr7	121448134	121448135	chr7:121448135:A:G	rs4731015	A	G	G	Sox1_MA0870.1	20	0	+	0	0	.
chr7	121715057	121715058	chr7:121715058:G:A	rs75902089	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	121716888	121716889	chr7:121716889:A:G	rs6466804	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	121914736	121914737	chr7:121914737:C:T	rs6946211	C	T	T	Sox1_MA0870.1	21	0	+	0	0	.
chr7	121994596	121994597	chr7:121994597:G:A	rs78575875	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr7	122313046	122313047	chr7:122313047:T:C	rs34474804	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr7	122390255	122390256	chr7:122390256:C:G	rs60674414	C	G	C	Sox1_MA0870.1	21	0	-	0	0	.
chr7	122415819	122415820	chr7:122415820:A:G	rs6979826	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	122679471	122679472	chr7:122679472:G:A	rs77466975	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	122778568	122778569	chr7:122778569:A:G	rs40364	A	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	123208886	123208887	chr7:123208887:T:C	rs79647431	T	C	T	Sox1_MA0870.1	9	1	-	6.82022810824297	-0.08852667107225021	AACAAAAACAGTGGT
chr7	123537074	123537075	chr7:123537075:A:T	rs34418989	A	T	a	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	123788861	123788862	chr7:123788862:G:T	rs77738210	G	T	G	Sox1_MA0870.1	8	1	-	7.902553176022156	2.0093835217039424	TACAATTACATTTTT
chr7	124171289	124171290	chr7:124171290:C:T	rs746087989	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr7	124208386	124208387	chr7:124208387:C:A	rs6974549	C	A	C	Sox1_MA0870.1	12	1	-	5.359336452826783	-1.5494183264884378	ATGAATAACATTGCT
chr7	124275673	124275674	chr7:124275674:G:A	rs1860578	G	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr7	124288886	124288887	chr7:124288887:G:A	rs4289743	G	A	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	125489774	125489775	chr7:125489775:T:C	rs73719923	T	C	.	Sox1_MA0870.1	34	0	-	0	0	.
chr7	125841138	125841139	chr7:125841139:G:A	rs2402798	G	A	A	Sox1_MA0870.1	24	0	+	0	0	.
chr7	125908755	125908756	chr7:125908756:T:C	rs55914199	T	C	T	Sox1_MA0870.1	5	1	+	4.142717237902115	-2.760447520745645	GACAATTGGAGTGAC
chr7	125922136	125922137	chr7:125922137:T:C	rs9886176	T	C	t	Sox1_MA0870.1	22	0	-	0	0	.
chr7	126103951	126103952	chr7:126103952:G:C	rs71576263	G	C	G	Sox1_MA0870.1	8	1	-	4.756319609509193	0.9858166166088554	GTCAATGACAATGTT
chr7	126426823	126426824	chr7:126426824:A:G	rs10226585	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr7	126446834	126446835	chr7:126446835:T:A	rs10252001	T	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr7	126573276	126573277	chr7:126573277:G:A	rs12674181	G	A	A	Sox1_MA0870.1	2	1	-	5.020864717091327	-1.8878900622238937	AACACTGGCATTCTA
chr7	127287318	127287319	chr7:127287319:C:T	rs17862343	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr7	127389374	127389375	chr7:127389375:C:A	rs6978090	C	A	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	127518302	127518303	chr7:127518303:T:G	rs10273635	T	G	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	127669712	127669713	chr7:127669713:A:C	chr7:127669713:A:C	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	127731698	127731699	chr7:127731699:G:A	rs10229187	G	A	A	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	127805539	127805540	chr7:127805540:A:G	rs10251548	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	128066628	128066629	chr7:128066629:G:T	rs3757755	G	T	G	Sox1_MA0870.1	12	1	+	6.166964706766969	-0.7417900725482524	ATTAATTGCATTGTT
chr7	128066633	128066634	chr7:128066634:T:C	rs3757754	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr7	128272588	128272589	chr7:128272589:A:G	rs4731438	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr7	128353606	128353607	chr7:128353607:C:G	rs7810319	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr7	128383725	128383726	chr7:128383726:T:A	rs143275038	T	A	T	Sox1_MA0870.1	21	0	+	0	0	.
chr7	128911308	128911309	chr7:128911309:G:T	rs11978560	G	T	G	Sox1_MA0870.1	5	1	+	4.850044184574807	11.753208943222566	GACACGACCAGTGTT
chr7	129115880	129115881	chr7:129115881:T:C	rs59891781	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr7	129536334	129536335	chr7:129536335:T:G	rs10267839	T	G	T	Sox1_MA0870.1	11	1	+	5.197491547370019	-1.7052411394868128	TGCCATTCCATTGTT
chr7	129865225	129865226	chr7:129865226:T:G	rs527712450	T	G	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	129941497	129941498	chr7:129941498:C:T	rs1725078	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	130276484	130276485	chr7:130276485:C:T	rs41274170	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr7	130334359	130334360	chr7:130334360:C:T	rs7798773	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	130350293	130350294	chr7:130350294:A:G	rs6957041	A	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr7	130352667	130352668	chr7:130352668:A:G	rs11760909	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	130712772	130712773	chr7:130712773:C:T	rs7790241	C	T	C	Sox1_MA0870.1	2	1	+	5.1152737873589835	-1.7934809919562371	TACCATACCATTGGC
chr7	130904639	130904640	chr7:130904640:C:T	rs147046488	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr7	130904640	130904641	chr7:130904641:G:A	rs2278747	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	131016325	131016326	chr7:131016326:T:C	rs535927755	T	C	C	Sox1_MA0870.1	5	1	+	5.190026274569293	-1.713138484078467	AACAATGGCATTTCC
chr7	131016328	131016329	chr7:131016329:C:A	rs7801390	C	A	C	Sox1_MA0870.1	8	1	+	5.190026274569293	-0.7031433797489209	AACAATGGCATTTCC
chr7	131016497	131016498	chr7:131016498:C:T	rs73145664	C	T	C	Sox1_MA0870.1	2	1	+	6.112530376756606	-0.7962244025586159	GACACTTCCCTTGTT
chr7	131154975	131154976	chr7:131154976:T:C	rs4731759	T	C	t	Sox1_MA0870.1	34	0	-	0	0	.
chr7	131235788	131235789	chr7:131235789:G:A	rs116057203	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr7	131337196	131337197	chr7:131337197:A:G	rs13238544	A	G	A	Sox1_MA0870.1	10	1	-	5.3653851565923425	-1.443311927543991	AACAAAACCATTCTT
chr7	131704895	131704896	chr7:131704896:T:C	rs10251246	T	C	C	Sox1_MA0870.1	3	1	+	6.842183540105008	7.27071392114417	CACTATATCATTGCC
chr7	131717642	131717643	chr7:131717643:C:G	rs34021471	C	G	C	Sox1_MA0870.1	2	1	+	5.09005560620923	-1.8186991731059918	AACACAGCCATTGCC
chr7	132082283	132082284	chr7:132082284:T:C	rs9649571	T	C	G	Sox1_MA0870.1	14	1	+	4.01001374218435	2.4990043377029454	CACACTTGCTGTGTT
chr7	132182073	132182074	chr7:132182074:A:G	rs3734984	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	132393919	132393920	chr7:132393920:G:T	rs116954928	G	T	G	Sox1_MA0870.1	34	0	-	0	0	.
chr7	132439164	132439165	chr7:132439165:T:C	rs3752707	T	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr7	132439184	132439185	chr7:132439185:A:T	rs3752708	A	T	A	Sox1_MA0870.1	14	1	+	6.734274105011657	8.635287429796804	GACACTTGCAGTGCA
chr7	132487599	132487600	chr7:132487600:T:C	rs156927	T	C	T	Sox1_MA0870.1	14	1	+	5.928237216980049	4.417227812498645	CACAATTTCAGAGTT
chr7	132508796	132508797	chr7:132508797:A:T	rs156963	A	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr7	132516952	132516953	chr7:132516953:C:T	rs156976	C	T	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	132764104	132764105	chr7:132764105:G:C	rs76460034	G	C	G	Sox1_MA0870.1	18	0	-	0	0	.
chr7	132849183	132849184	chr7:132849184:T:C	rs11763065	T	C	T	Sox1_MA0870.1	5	1	+	9.148217821347895	2.2450530627001366	CACAATACCATTCTT
chr7	132932032	132932033	chr7:132932033:G:A	rs6962471	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	132940086	132940087	chr7:132940087:A:G	rs10233020	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	133184188	133184189	chr7:133184189:C:T	rs4236642	C	T	-	Sox1_MA0870.1	-1	0	+	0	0	.
chr7	133506372	133506373	chr7:133506373:T:C	rs11975951	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr7	133510665	133510666	chr7:133510666:G:A	rs6966473	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	133601726	133601727	chr7:133601727:A:C	rs1222827060	A	C	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr7	133853184	133853185	chr7:133853185:G:C	rs79238907	G	C	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	134104434	134104435	chr7:134104435:C:T	rs11982121	C	T	-	Sox1_MA0870.1	8	1	+	5.339157330265953	1.1575477836286707	ATCTATTTCATTGCT
chr7	134254525	134254526	chr7:134254526:C:A	rs2544178	C	A	C	Sox1_MA0870.1	12	1	-	3.782820901277802	-3.125933878037419	ACCCCTTCCATTGTG
chr7	134388375	134388376	chr7:134388376:A:G	rs1628232	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr7	134432734	134432735	chr7:134432735:C:T	chr7:134432735:C:T	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	134521234	134521235	chr7:134521235:T:C	rs10278904	T	C	T	Sox1_MA0870.1	13	1	+	5.730554711974591	3.5528994145235964	ACCAATTTCAATGTT
chr7	134631103	134631104	chr7:134631104:T:C	rs12533064	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr7	134695839	134695840	chr7:134695840:T:C	rs75027741	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr7	134700032	134700033	chr7:134700033:C:T	rs149410637	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr7	134759368	134759369	chr7:134759369:T:C	rs1026275	T	C	T	Sox1_MA0870.1	24	0	+	0	0	.
chr7	134828596	134828597	chr7:134828597:G:A	rs13233583	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	134828643	134828644	chr7:134828644:G:A	rs11980803	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr7	134891714	134891715	chr7:134891715:T:C	rs77382246	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr7	135178047	135178048	chr7:135178048:C:T	rs292532	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr7	135238486	135238487	chr7:135238487:T:C	rs17168324	T	C	T	Sox1_MA0870.1	4	1	-	6.3304452966633455	-0.44713295750684356	CCCAATGCCAGTGCT
chr7	135267457	135267458	chr7:135267458:G:C	rs292649	G	C	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	135318624	135318625	chr7:135318625:C:T	rs13230718	C	T	C	Sox1_MA0870.1	12	1	-	4.1895401549898015	-2.719214624325419	CACAATCTCATCGTC
chr7	135540226	135540227	chr7:135540227:A:G	rs7792729	A	G	A	Sox1_MA0870.1	4	1	+	5.993547806281674	-0.784030447888514	GACAAAAACATTGGG
chr7	135798122	135798123	chr7:135798123:A:T	rs62491563	A	T	A	Sox1_MA0870.1	7	1	-	10.536628795641086	10.9782186757255	AACAAAATCATTGTG
chr7	135978128	135978129	chr7:135978129:T:C	rs116077446	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr7	135980464	135980465	chr7:135980465:G:A	rs116669115	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	136163508	136163509	chr7:136163509:T:C	rs834770	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	136533973	136533974	chr7:136533974:G:A	rs115951625	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr7	137006396	137006397	chr7:137006397:T:A	rs140980960	T	A	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr7	137032699	137032700	chr7:137032700:T:C	rs13229637	T	C	T	Sox1_MA0870.1	16	0	-	0	0	.
chr7	137539185	137539186	chr7:137539186:G:A	rs834065	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	138782008	138782009	chr7:138782009:T:G	rs55962121	T	G	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr7	139349167	139349168	chr7:139349168:A:G	rs4077889	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	139509904	139509905	chr7:139509905:T:C	rs2718238	T	C	T	Sox1_MA0870.1	15	0	+	0	0	.
chr7	139540674	139540675	chr7:139540675:C:A	rs35786058	C	A	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr7	139814231	139814232	chr7:139814232:G:T	rs150311262	G	T	G	Sox1_MA0870.1	12	1	+	4.3316228182210175	-2.5771319610942016	GACAATTGGTTTGTT
chr7	139981723	139981724	chr7:139981724:T:C	rs2299899	T	C	T	Sox1_MA0870.1	11	1	+	5.546548232575239	0.591153246764904	CTCACTGGGATTGTT
chr7	139995644	139995645	chr7:139995645:G:C	rs111256476	G	C	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr7	140286161	140286162	chr7:140286162:G:A	rs2429215	G	A	A	Sox1_MA0870.1	0	1	-	5.002415627568809	4.3000388704213295	CACGATATCAGTGTA
chr7	140358812	140358813	chr7:140358813:T:C	rs201353721	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	140376303	140376304	chr7:140376304:T:A	rs4368896	T	A	A	Sox1_MA0870.1	11	1	+	15.545375479303143	8.642642792446312	AACAATAACATTGCT
chr7	140611017	140611018	chr7:140611018:C:G	rs73500495	C	G	C	Sox1_MA0870.1	32	0	-	0	0	.
chr7	140611056	140611057	chr7:140611057:A:T	rs9691566	A	T	a	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	140982531	140982532	chr7:140982532:C:A	chr7:140982532:C:A	C	A	C	Sox1_MA0870.1	10	1	-	5.21983836737418	7.460963295937741	TACAATTTCAGTTTT
chr7	141425777	141425778	chr7:141425778:T:A	rs1860282	T	A	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr7	141425795	141425796	chr7:141425796:T:C	rs1181731	T	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr7	141659297	141659298	chr7:141659298:C:T	rs78374993	C	T	C	Sox1_MA0870.1	12	1	-	6.140198832613903	-0.7685559467013183	GACCATTCCAGTGTC
chr7	141976012	141976013	chr7:141976013:T:C	rs73540589	T	C	T	Sox1_MA0870.1	9	1	-	6.44546186523735	-0.4632929140778709	GCCACTGCCAGTGTT
chr7	142244081	142244082	chr7:142244082:G:A	rs4382388	G	A	A	Sox1_MA0870.1	15	0	+	0	0	.
chr7	142348621	142348622	chr7:142348622:T:C	rs6979216	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr7	142471172	142471173	chr7:142471173:T:C	rs2734162	T	C	.	Sox1_MA0870.1	18	0	+	0	0	.
chr7	142480978	142480979	chr7:142480979:A:G	rs1339971160	A	G	.	Sox1_MA0870.1	10	1	-	4.869007599228638	-1.9396894849076962	TACCATTACATTGAC
chr7	142782971	142782972	chr7:142782972:T:C	chr7:142782972:T:C	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr7	142928321	142928322	chr7:142928322:C:A	rs4252416	C	A	C	Sox1_MA0870.1	31	0	+	0	0	.
chr7	142964150	142964151	chr7:142964151:A:G	rs8175954	A	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr7	143040551	143040552	chr7:143040552:C:T	rs139156380	C	T	C	Sox1_MA0870.1	32	0	-	0	0	.
chr7	143240406	143240407	chr7:143240407:G:A	rs147790104	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr7	143240407	143240408	chr7:143240408:C:A	rs141360367	C	A	C	Sox1_MA0870.1	31	0	+	0	0	.
chr7	143737262	143737263	chr7:143737263:G:A	rs57749006	G	A	A	Sox1_MA0870.1	19	0	-	0	0	.
chr7	143737263	143737264	chr7:143737264:T:C	rs144919945	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr7	143905448	143905449	chr7:143905449:T:G	rs73462409	T	G	T	Sox1_MA0870.1	19	0	-	0	0	.
chr7	143936063	143936064	chr7:143936064:T:C	rs13235235	T	C	.	Sox1_MA0870.1	3	1	+	5.024409597136444	5.452939978175603	TTCTATGCCATTGTT
chr7	144118650	144118651	chr7:144118651:T:C	rs10263904	T	C	c	Sox1_MA0870.1	25	0	+	0	0	.
chr7	144379670	144379671	chr7:144379671:A:G	rs1612590	A	G	g	Sox1_MA0870.1	-16	0	+	0	0	.
chr7	144665768	144665769	chr7:144665769:A:C	rs6942497	A	C	C	Sox1_MA0870.1	10	1	-	5.037461494873645	2.796336566310083	TTCACTATCATTGAG
chr7	144924204	144924205	chr7:144924205:C:G	rs2699464	C	G	C	Sox1_MA0870.1	29	0	-	0	0	.
chr7	145019171	145019172	chr7:145019172:C:T	rs6464638	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr7	145122801	145122802	chr7:145122802:A:G	rs56069552	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr7	145137836	145137837	chr7:145137837:C:T	rs611224	C	T	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr7	145511034	145511035	chr7:145511035:A:G	rs17169735	A	G	G	Sox1_MA0870.1	0	1	+	5.666308886987901	4.324185744181149	AACAAGAACATTGGC
chr7	145664933	145664934	chr7:145664934:A:T	rs2191275	A	T	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr7	145762495	145762496	chr7:145762496:A:C	rs10252954	A	C	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr7	145845981	145845982	chr7:145845982:T:C	rs6975640	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr7	145910149	145910150	chr7:145910150:C:T	rs73460973	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr7	146534417	146534418	chr7:146534418:G:A	rs801931	G	A	-	Sox1_MA0870.1	10	1	+	5.642474167570967	1.074902011998193	TACAATATGAGTGCC
chr7	146647012	146647013	chr7:146647013:A:G	rs10258848	A	G	A	Sox1_MA0870.1	6	1	+	5.593898737341336	4.055292044200618	CACAATATCAATGGT
chr7	146949257	146949258	chr7:146949258:T:C	rs33954628	T	C	T	Sox1_MA0870.1	4	1	-	4.71198823224429	-2.0655900219258982	GACAATTTCATTTAT
chr7	147117092	147117093	chr7:147117093:G:A	rs12536128	G	A	G	Sox1_MA0870.1	8	1	-	3.873253243102213	-0.3083563035350686	CCGAATGGCATTGTT
chr7	147337362	147337363	chr7:147337363:C:G	rs35444249	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	147340035	147340036	chr7:147340036:T:C	rs899619	T	C	C	Sox1_MA0870.1	10	1	+	6.474744319550193	-0.3339527645861411	ACCAATGGCATTGGA
chr7	147478719	147478720	chr7:147478720:C:T	rs111430821	C	T	C	Sox1_MA0870.1	4	1	+	5.234329798746286	0.4135644792013141	GGCACTTCCATTGCC
chr7	147498956	147498957	chr7:147498957:A:T	rs7778685	A	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr7	147570880	147570881	chr7:147570881:G:A	rs73464989	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	147639254	147639255	chr7:147639255:G:C	rs372580822	G	C	G	Sox1_MA0870.1	24	0	+	0	0	.
chr7	147731517	147731518	chr7:147731518:G:A	rs77871602	G	A	A	Sox1_MA0870.1	8	1	-	4.890656046532037	0.7090464998947542	AACACTAACAGTTTG
chr7	147947265	147947266	chr7:147947266:C:T	rs4631378	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	148020775	148020776	chr7:148020776:C:T	rs4726910	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr7	148107962	148107963	chr7:148107963:C:G	rs4726922	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr7	148304198	148304199	chr7:148304199:G:A	rs1110144	G	A	G	Sox1_MA0870.1	8	1	-	5.879858961382455	1.6982494147451723	GACAATTTCTTTGCT
chr7	148382713	148382714	chr7:148382714:T:C	rs1637845	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr7	148382732	148382733	chr7:148382733:T:C	rs1637844	T	C	t	Sox1_MA0870.1	3	1	-	3.751401375707689	-3.1491882914895344	AGCACTGCGATTGCT
chr7	148385116	148385117	chr7:148385117:C:T	rs1406597	C	T	T	Sox1_MA0870.1	12	1	-	2.9858725198036282	-3.922882259511592	CACAATGACAATGGC
chr7	148395890	148395891	chr7:148395891:G:A	rs10242598	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	148428282	148428283	chr7:148428283:A:G	rs574048324	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr7	148588789	148588790	chr7:148588790:A:G	rs3801977	A	G	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	148730497	148730498	chr7:148730498:A:T	rs6464923	A	T	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	148790236	148790237	chr7:148790237:G:T	rs933436	G	T	T	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	148918034	148918035	chr7:148918035:G:A	rs10234012	G	A	G	Sox1_MA0870.1	13	1	-	4.807747132408775	6.985402429859769	GACTATGTCATTGCA
chr7	148929201	148929202	chr7:148929202:T:C	rs11971625	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	148941285	148941286	chr7:148941286:A:C	rs564181437	A	C	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr7	148966672	148966673	chr7:148966673:G:T	rs147491381	G	T	G	Sox1_MA0870.1	32	0	-	0	0	.
chr7	148966679	148966680	chr7:148966680:C:T	rs183692643	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr7	148966682	148966683	chr7:148966683:G:A	rs1389410038	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr7	149027412	149027413	chr7:149027413:G:A	rs6965276	G	A	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr7	149066185	149066186	chr7:149066186:T:C	rs151257199	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr7	149321663	149321664	chr7:149321664:G:A	rs2003500	G	A	A	Sox1_MA0870.1	6	1	+	5.295249327257529	6.833856020398247	CTCACTGACAGTGCT
chr7	149888210	149888211	chr7:149888211:G:T	rs28485543	G	T	.	Sox1_MA0870.1	12	1	+	3.993140956831119	-2.915613822484101	TACACTTTCTTTGTC
chr7	149933914	149933915	chr7:149933915:G:T	rs7791831	G	T	.	Sox1_MA0870.1	27	0	+	0	0	.
chr7	150404097	150404098	chr7:150404098:T:C	rs113626325	T	C	C	Sox1_MA0870.1	10	1	+	4.064128496242143	-2.7445685878941912	ACCACATCCATTGTC
chr7	150412958	150412959	chr7:150412959:C:T	rs192589690	C	T	C	Sox1_MA0870.1	7	1	+	6.302383268257797	6.290554215709424	GACTCTACCATTGCT
chr7	150520246	150520247	chr7:150520247:G:T	rs3735079	G	T	G	Sox1_MA0870.1	15	0	-	0	0	.
chr7	150791527	150791528	chr7:150791528:A:G	rs2302479	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr7	150824007	150824008	chr7:150824008:A:G	rs7787744	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr7	150831348	150831349	chr7:150831349:G:C	rs4725953	G	C	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr7	150863233	150863234	chr7:150863234:A:G	rs11978239	A	G	A	Sox1_MA0870.1	13	1	-	8.489091865785191	6.311436568334196	AACAACACCATTGTA
chr7	151017724	151017725	chr7:151017725:G:A	rs2373929	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr7	151081093	151081094	chr7:151081094:C:T	rs11977913	C	T	c	Sox1_MA0870.1	-8	0	-	0	0	.
chr7	151226153	151226154	chr7:151226154:C:T	rs12532489	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	151233052	151233053	chr7:151233053:G:A	chr7:151233053:G:A	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr7	151330867	151330868	chr7:151330868:T:C	rs2792448	T	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	151458643	151458644	chr7:151458644:G:A	rs80148781	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr7	151467261	151467262	chr7:151467262:G:A	rs17635434	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr7	151516047	151516048	chr7:151516048:G:C	rs3815384	G	C	G	Sox1_MA0870.1	16	0	+	0	0	.
chr7	151709253	151709254	chr7:151709254:A:C	rs12672354	A	C	-	Sox1_MA0870.1	32	0	+	0	0	.
chr7	151784337	151784338	chr7:151784338:T:C	rs62478217	T	C	T	Sox1_MA0870.1	9	1	-	3.07974520514791	-3.8290095741673107	GACATTTGCATTGGC
chr7	151844836	151844837	chr7:151844837:A:G	rs77913872	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr7	151873744	151873745	chr7:151873745:G:T	rs35697533	G	T	G	Sox1_MA0870.1	22	0	+	0	0	.
chr7	151931774	151931775	chr7:151931775:C:T	rs6948413	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr7	152146013	152146014	chr7:152146014:C:T	rs6954362	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr7	152341163	152341164	chr7:152341164:T:C	rs34782657	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr7	152733684	152733685	chr7:152733685:T:C	rs4601228	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	153081644	153081645	chr7:153081645:A:G	rs10952385	A	G	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr7	153323476	153323477	chr7:153323477:C:G	rs390279	C	G	G	Sox1_MA0870.1	14	1	+	4.4244215177654596	4.20974883452876	CACAATAACTTTGGC
chr7	153519785	153519786	chr7:153519786:C:A	rs75253742	C	A	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr7	153542143	153542144	chr7:153542144:C:T	rs4389845	C	T	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr7	153639734	153639735	chr7:153639735:A:G	rs4725510	A	G	.	Sox1_MA0870.1	9	1	+	6.979305540630419	0.07055076131519822	CACAATTACAATGTG
chr7	154099923	154099924	chr7:154099924:C:T	rs4082394	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	154127725	154127726	chr7:154127726:C:T	rs544672879	C	T	T	Sox1_MA0870.1	11	1	+	5.124236279459618	10.079631265269953	TCCAATGGCATCGTT
chr7	154250371	154250372	chr7:154250372:A:T	rs117529650	A	T	A	Sox1_MA0870.1	1	1	+	3.5262190236886886	0.24893477652754814	AACACCTGCAGTGTG
chr7	154454353	154454354	chr7:154454354:A:G	rs74984571	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	154597675	154597676	chr7:154597676:G:A	rs10263481	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr7	154597676	154597677	chr7:154597677:C:T	rs10237169	C	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr7	154622887	154622888	chr7:154622888:G:A	rs62477221	G	A	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr7	154626168	154626169	chr7:154626169:T:C	rs4960555	T	C	T	Sox1_MA0870.1	9	1	-	5.9643415710753205	-0.9444132082399005	AGCCATAGCATTGCT
chr7	154757692	154757693	chr7:154757693:T:C	rs12112562	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr7	154757715	154757716	chr7:154757716:G:C	rs62475823	G	C	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr7	154778139	154778140	chr7:154778140:G:A	rs34259212	G	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr7	154877294	154877295	chr7:154877295:C:G	rs10274105	C	G	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	154879986	154879987	chr7:154879987:C:G	rs3807293	C	G	C	Sox1_MA0870.1	14	1	+	4.312588353591513	4.097915670354814	GACAGTGACAGTGTC
chr7	154953350	154953351	chr7:154953351:A:C	rs6960009	A	C	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	155097452	155097453	chr7:155097453:G:A	rs55916846	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr7	155162057	155162058	chr7:155162058:A:G	rs1621963	A	G	N	Sox1_MA0870.1	-8	0	+	0	0	.
chr7	155211036	155211037	chr7:155211037:T:C	rs11766971	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr7	155211044	155211045	chr7:155211045:C:T	rs75003816	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr7	155257395	155257396	chr7:155257396:G:A	rs35570237	G	A	g	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	155261392	155261393	chr7:155261393:C:T	rs59274457	C	T	c	Sox1_MA0870.1	31	0	+	0	0	.
chr7	155285852	155285853	chr7:155285853:C:T	rs9769991	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr7	155287023	155287024	chr7:155287024:G:A	rs9801301	G	A	A	Sox1_MA0870.1	14	1	-	5.963762658826743	7.474772063308148	AACAATAACATGGAC
chr7	155300514	155300515	chr7:155300515:C:G	rs11980659	C	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	155403063	155403064	chr7:155403064:G:T	rs4716545	G	T	G	Sox1_MA0870.1	5	1	+	4.065433358592855	10.968598117240612	TACAAGAGCAGTGCT
chr7	155558898	155558899	chr7:155558899:T:C	rs55747191	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr7	155580430	155580431	chr7:155580431:T:C	rs10274485	T	C	T	Sox1_MA0870.1	6	1	+	7.272183677144576	2.8560333900256745	AACAAGTGCATTGCT
chr7	155873305	155873306	chr7:155873306:T:C	rs12671696	T	C	T	Sox1_MA0870.1	13	1	+	3.867610988526181	1.689955691075187	TCCATTTGCATTGTT
chr7	155888825	155888826	chr7:155888826:G:C	rs12698334	G	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr7	155900786	155900787	chr7:155900787:C:A	rs1824552	C	A	C	Sox1_MA0870.1	2	1	+	3.8940201070578655	-3.014734672257356	GACAATGGCATTTGT
chr7	155913222	155913223	chr7:155913223:A:G	rs6975429	A	G	G	Sox1_MA0870.1	5	1	-	3.8972337023945096	-3.005931056253249	CACAATGACCGTGTA
chr7	156000092	156000093	chr7:156000093:C:T	rs62480441	C	T	C	Sox1_MA0870.1	-13	0	+	0	0	.
chr7	156000111	156000112	chr7:156000112:C:T	rs115730087	C	T	C	Sox1_MA0870.1	6	1	+	3.780724123771235	8.196874410890135	CTCAATCGCATTGGT
chr7	156099320	156099321	chr7:156099321:C:A	rs192725144	C	A	C	Sox1_MA0870.1	33	0	-	0	0	.
chr7	156156104	156156105	chr7:156156105:A:T	rs1735005	A	T	A	Sox1_MA0870.1	23	0	-	0	0	.
chr7	156156260	156156261	chr7:156156261:A:C	rs143824156	A	C	A	Sox1_MA0870.1	13	1	-	6.4150813490344945	2.7725336223974213	CACACATGCATTGTG
chr7	156156289	156156290	chr7:156156290:A:G	rs1735006	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr7	156324419	156324420	chr7:156324420:T:C	rs4424129	T	C	C	Sox1_MA0870.1	-1	0	+	0	0	.
chr7	156356807	156356808	chr7:156356808:C:G	rs7798044	C	G	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	156368169	156368170	chr7:156368170:C:T	rs34977094	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr7	156368188	156368189	chr7:156368189:T:C	rs34810003	T	C	T	Sox1_MA0870.1	7	1	-	5.722917307687222	5.325938979890715	GGCAATTACAGTGAT
chr7	156368202	156368203	chr7:156368203:T:G	rs34245976	T	G	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr7	156457120	156457121	chr7:156457121:C:T	rs12697963	C	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr7	156558481	156558482	chr7:156558482:C:T	rs923975994	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	156641474	156641475	chr7:156641475:T:G	rs61418670	T	G	T	Sox1_MA0870.1	21	0	+	0	0	.
chr7	156654857	156654858	chr7:156654858:T:A	rs112618417	T	A	T	Sox1_MA0870.1	17	0	+	0	0	.
chr7	157020142	157020143	chr7:157020143:T:C	rs75889171	T	C	T	Sox1_MA0870.1	13	1	+	6.546504854352046	4.368849556901051	GACAATTTCATTTTC
chr7	157027809	157027810	chr7:157027810:G:A	rs76421322	G	A	A	Sox1_MA0870.1	28	0	-	0	0	.
chr7	157203533	157203534	chr7:157203534:T:C	rs3802115	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr7	157267133	157267134	chr7:157267134:C:A	rs4262225	C	A	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr7	157403351	157403352	chr7:157403352:A:G	rs945120849	A	G	A	Sox1_MA0870.1	-8	0	+	0	0	.
chr7	157403360	157403361	chr7:157403361:C:T	rs140733337	C	T	C	Sox1_MA0870.1	1	1	+	4.831131956508845	5.322988094192205	TCCACTGACATTGCC
chr7	157490188	157490189	chr7:157490189:C:T	rs73181232	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr7	157490189	157490190	chr7:157490190:A:G	rs66677469	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr7	157493774	157493775	chr7:157493775:A:G	rs73744951	A	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr7	157569007	157569008	chr7:157569008:C:T	rs144237368	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr7	157569041	157569042	chr7:157569042:T:C	rs221294	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr7	157974486	157974487	chr7:157974487:G:A	rs11763881	G	A	G	Sox1_MA0870.1	10	1	+	4.065159493826697	-0.502412661746075	CTCAAGAACAGTGTT
chr7	158122649	158122650	chr7:158122650:C:A	rs73171588	C	A	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr7	158180058	158180059	chr7:158180059:A:G	rs6979649	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr7	158320697	158320698	chr7:158320698:T:G	rs896779	T	G	T	Sox1_MA0870.1	3	1	-	7.095401870193363	2.0096369451551874	ATGAATATCATTGTT
chr7	158377738	158377739	chr7:158377739:C:G	rs75366508	C	G	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr7	158483576	158483577	chr7:158483577:G:A	rs576506034	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr7	158492010	158492011	chr7:158492011:T:C	rs118023943	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr7	158638214	158638215	chr7:158638215:C:T	rs877279	C	T	c	Sox1_MA0870.1	-19	0	+	0	0	.
chr7	158712489	158712490	chr7:158712490:A:G	rs7780388	A	G	A	Sox1_MA0870.1	9	1	+	3.238803360611537	-3.6699514187036835	AACACGGGCATTGCC
chr7	158823660	158823661	chr7:158823661:A:G	rs1320879475	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr7	159047688	159047689	chr7:159047689:G:A	rs2730261	G	A	G	Sox1_MA0870.1	5	1	-	3.911111238791158	10.814275997438918	AACAACAACATTCTT
chr7	159091613	159091614	chr7:159091614:C:A	rs73169239	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	159094582	159094583	chr7:159094583:A:G	rs78766442	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr7	159094601	159094602	chr7:159094602:T:C	rs73169244	T	C	C	Sox1_MA0870.1	5	1	+	4.135318794839689	-2.767845963808069	GATAATTGCAGTGTG
chr7	159100501	159100502	chr7:159100502:T:C	rs72621132	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr7	159142149	159142150	chr7:159142150:G:A	rs4345505	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr7	159193388	159193389	chr7:159193389:G:T	rs396061	G	T	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr7	159193417	159193418	chr7:159193418:G:A	rs396091	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr8	339568	339569	chr8:339569:T:G	rs78661643	T	G	.	Sox1_MA0870.1	11	1	+	13.304250550739582	6.401517863882751	AACAATAACAGTGCT
chr8	343367	343368	chr8:343368:A:T	rs6983362	A	T	.	Sox1_MA0870.1	9	1	+	11.030866952494943	4.122112173179723	AACAATGACATTGGC
chr8	362228	362229	chr8:362229:A:G	rs75119291	A	G	.	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	385485	385486	chr8:385486:T:A	rs1550949	T	A	.	Sox1_MA0870.1	16	0	+	0	0	.
chr8	615515	615516	chr8:615516:G:A	rs145066056	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr8	654938	654939	chr8:654939:C:G	rs1025571553	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr8	676561	676562	chr8:676562:T:C	rs73521114	T	C	t	Sox1_MA0870.1	20	0	+	0	0	.
chr8	679488	679489	chr8:679489:C:T	rs75484252	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	679506	679507	chr8:679507:G:C	rs551010799	G	C	G	Sox1_MA0870.1	0	1	+	3.463489232126258	3.56931502637803	GACAAGGGCATTGCA
chr8	686538	686539	chr8:686539:C:G	rs71512846	C	G	c	Sox1_MA0870.1	27	0	-	0	0	.
chr8	805539	805540	chr8:805540:C:G	rs74514726	C	G	C	Sox1_MA0870.1	5	1	-	5.922301560896068	5.922301560896068	CACAAGGGCATTGTG
chr8	909981	909982	chr8:909982:T:G	rs955980	T	G	T	Sox1_MA0870.1	19	0	-	0	0	.
chr8	1032866	1032867	chr8:1032867:T:A	rs2600502	T	A	T	Sox1_MA0870.1	11	1	+	5.071629638522129	-1.8311030483347026	GACAAAAGAATTGTT
chr8	1052062	1052063	chr8:1052063:C:A	rs117467332	C	A	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	1087928	1087929	chr8:1087929:G:A	rs73180697	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	1087972	1087973	chr8:1087973:C:G	rs2701897	C	G	C	Sox1_MA0870.1	34	0	+	0	0	.
chr8	1166917	1166918	chr8:1166918:G:T	rs10086026	G	T	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	1223537	1223538	chr8:1223538:T:C	chr8:1223538:T:C	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr8	1289416	1289417	chr8:1289417:A:G	rs13277401	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr8	1318762	1318763	chr8:1318763:C:A	rs10094861	C	A	C	Sox1_MA0870.1	8	1	+	4.275786509634521	-1.617383144683692	AACTAATCCATTGTC
chr8	1343333	1343334	chr8:1343334:G:A	rs74356841	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr8	1442851	1442852	chr8:1442852:T:C	rs10108209	T	C	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	1502806	1502807	chr8:1502807:A:G	rs6997216	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr8	1743293	1743294	chr8:1743294:G:T	rs11136421	G	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr8	1745669	1745670	chr8:1745670:G:A	rs548661062	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr8	1745683	1745684	chr8:1745684:A:G	rs57165429	A	G	C	Sox1_MA0870.1	10	1	-	4.590738263031332	-2.217958821105001	GACAAATCCATTGGG
chr8	1745712	1745713	chr8:1745713:T:A	rs35869899	T	A	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr8	1925887	1925888	chr8:1925888:A:G	rs7386034	A	G	G	Sox1_MA0870.1	3	1	+	4.565781517563712	-2.3348081496335134	GACACTGACAATGTC
chr8	1925903	1925904	chr8:1925904:T:C	rs56680073	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr8	2035770	2035771	chr8:2035771:C:T	rs73657703	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr8	2051405	2051406	chr8:2051406:G:A	rs3779866	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr8	2051446	2051447	chr8:2051447:T:C	rs3779865	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	2056966	2056967	chr8:2056967:G:C	rs1542065	G	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	2057064	2057065	chr8:2057065:T:C	rs7820083	T	C	T	Sox1_MA0870.1	9	1	-	4.1386772133440015	-2.7700775659712193	ACCACTGACAGTGCA
chr8	2091767	2091768	chr8:2091768:A:G	rs1550454	A	G	A	Sox1_MA0870.1	13	1	-	5.535143346781815	3.357488049330821	GACACTGTCATTTTT
chr8	2130985	2130986	chr8:2130986:A:G	rs183404589	A	G	A	Sox1_MA0870.1	10	1	+	4.625514278208694	9.193086433781467	CACACTTGCAATGTG
chr8	2182872	2182873	chr8:2182873:C:T	rs543064767	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr8	2182877	2182878	chr8:2182878:C:T	rs562951991	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr8	2182911	2182912	chr8:2182912:C:G	rs80223530	C	G	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	2242438	2242439	chr8:2242439:A:C	rs200120688	A	C	a	Sox1_MA0870.1	-13	0	+	0	0	.
chr8	2630325	2630326	chr8:2630326:A:G	rs3935443	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr8	2803532	2803533	chr8:2803533:A:G	rs7830827	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr8	2919562	2919563	chr8:2919563:C:A	rs189499756	C	A	c	Sox1_MA0870.1	23	0	+	0	0	.
chr8	3100675	3100676	chr8:3100676:G:C	rs66471223	G	C	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	3192499	3192500	chr8:3192500:C:T	rs6558727	C	T	N	Sox1_MA0870.1	0	1	-	6.2579792103543035	7.600102353161056	GACAATTACTGTGTT
chr8	3228983	3228984	chr8:3228984:C:G	rs13258433	C	G	G	Sox1_MA0870.1	8	1	+	6.360086467098112	2.589583474197774	CACACATACATTGCT
chr8	3247373	3247374	chr8:3247374:C:G	rs35729878	C	G	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	3358762	3358763	chr8:3358763:C:T	rs9774400	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr8	3587354	3587355	chr8:3587355:T:C	rs77899112	T	C	C	Sox1_MA0870.1	10	1	+	3.691565544669915	-3.1171315394664187	GACAAGCGCATTGTT
chr8	3646672	3646673	chr8:3646673:A:G	rs112523280	A	G	A	Sox1_MA0870.1	9	1	+	7.487436019302892	0.5786812399876712	AAGACTTGCATTGTT
chr8	3646697	3646698	chr8:3646698:C:T	rs186981033	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr8	3764259	3764260	chr8:3764260:C:T	rs60996915	C	T	C	Sox1_MA0870.1	12	1	-	4.844695791599497	-2.064058987715723	AACACAGGCAGTGTG
chr8	3771710	3771711	chr8:3771711:C:G	rs143025491	C	G	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	3813117	3813118	chr8:3813118:T:G	rs7840023	T	G	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	3910100	3910101	chr8:3910101:C:T	rs2688326	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	4062681	4062682	chr8:4062682:C:G	rs6991762	C	G	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	4117317	4117318	chr8:4117318:A:G	rs5016258	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	4445956	4445957	chr8:4445957:G:C	rs1154066	G	C	g	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	4567713	4567714	chr8:4567714:C:T	rs2693792	C	T	T	Sox1_MA0870.1	8	1	+	4.40026062171621	0.21865107507892756	GCCAATTCCAATGTT
chr8	4732534	4732535	chr8:4732535:T:C	rs13255293	T	C	T	Sox1_MA0870.1	9	1	-	7.058376758143585	0.14962197882836614	TTCAATTGCATTGCA
chr8	4834070	4834071	chr8:4834071:A:G	rs11782229	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	5026880	5026881	chr8:5026881:T:C	rs17072086	T	C	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr8	5144473	5144474	chr8:5144474:C:T	rs4875449	C	T	T	Sox1_MA0870.1	8	1	+	3.600697883851775	-0.5809116627855057	AACAGGATCATTGTT
chr8	5172567	5172568	chr8:5172568:G:A	rs6558974	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	5226502	5226503	chr8:5226503:C:T	rs62489595	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr8	5357304	5357305	chr8:5357305:G:T	rs10106459	G	T	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	5455977	5455978	chr8:5455978:G:T	rs7827464	G	T	G	Sox1_MA0870.1	22	0	+	0	0	.
chr8	5725736	5725737	chr8:5725737:C:T	rs538973570	C	T	-	Sox1_MA0870.1	25	0	-	0	0	.
chr8	5733493	5733494	chr8:5733494:C:G	rs12679100	C	G	C	Sox1_MA0870.1	16	0	+	0	0	.
chr8	6135026	6135027	chr8:6135027:G:A	rs56046539	G	A	T	Sox1_MA0870.1	3	1	-	5.976087904542941	5.547557523503779	AACCATTTCATTGAA
chr8	6187309	6187310	chr8:6187310:G:A	rs2570650	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr8	6247090	6247091	chr8:6247091:T:C	rs6559126	T	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	6247116	6247117	chr8:6247117:C:G	rs6559127	C	G	G	Sox1_MA0870.1	11	1	+	5.868735798989628	3.92139809794313	GACAATTTCAGCGTA
chr8	6313802	6313803	chr8:6313803:A:C	rs6999296	A	C	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	6327836	6327837	chr8:6327837:C:T	rs71505115	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr8	6327839	6327840	chr8:6327840:G:C	rs12550696	G	C	G	Sox1_MA0870.1	24	0	-	0	0	.
chr8	6418007	6418008	chr8:6418008:G:A	rs7002495	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	6464112	6464113	chr8:6464113:T:A	rs145968388	T	A	T	Sox1_MA0870.1	26	0	+	0	0	.
chr8	6533305	6533306	chr8:6533306:T:C	rs145792022	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr8	6566470	6566471	chr8:6566471:G:A	rs2442528	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr8	6587428	6587429	chr8:6587429:A:G	rs7003723	A	G	a	Sox1_MA0870.1	10	1	+	5.817200074475769	10.384772230048542	AACACTTTCAATGTG
chr8	6589334	6589335	chr8:6589335:G:A	rs73509269	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	6643022	6643023	chr8:6643023:C:T	rs1057091	C	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	6707170	6707171	chr8:6707171:T:C	rs1425784	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr8	6843732	6843733	chr8:6843733:G:A	rs894835680	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	6869091	6869092	chr8:6869092:T:G	rs2951825	T	G	T	Sox1_MA0870.1	23	0	-	0	0	.
chr8	6879673	6879674	chr8:6879674:A:G	rs2741136	A	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr8	6879712	6879713	chr8:6879713:A:G	rs2741137	A	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr8	6961721	6961722	chr8:6961722:T:C	rs62488525	T	C	.	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	7253809	7253810	chr8:7253810:C:T	rs370010535	C	T	.	Sox1_MA0870.1	34	0	-	0	0	.
chr8	7253840	7253841	chr8:7253841:T:A	rs62488770	T	A	.	Sox1_MA0870.1	3	1	-	7.266593656477114	1.7522983503997784	AACAATTGCTTTGCT
chr8	7547472	7547473	chr8:7547473:G:A	rs62639834	G	A	.	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	7547493	7547494	chr8:7547494:A:C	rs78324875	A	C	.	Sox1_MA0870.1	3	1	+	7.266593656477114	2.180828731438939	AACAATTGCTTTGCT
chr8	7765885	7765886	chr8:7765886:G:C	rs774409518	G	C	.	Sox1_MA0870.1	8	1	-	7.266593656477114	3.496090663576777	AACAATTGCTTTGCT
chr8	8273156	8273157	chr8:8273157:A:T	rs76072795	A	T	A	Sox1_MA0870.1	17	0	-	0	0	.
chr8	8273167	8273168	chr8:8273168:C:T	chr8:8273168:C:T	C	T	C	Sox1_MA0870.1	6	1	-	5.463892613263058	7.0024993064037755	CACACTGCCAGTGAC
chr8	8273171	8273172	chr8:8273172:G:A	rs114763371	G	A	G	Sox1_MA0870.1	2	1	-	5.463892613263058	-1.4448621660521637	CACACTGCCAGTGAC
chr8	8333622	8333623	chr8:8333623:G:A	rs28607078	G	A	G	Sox1_MA0870.1	0	1	+	8.911165448130312	10.253288590937064	GGCACTTTCATTGTT
chr8	8364963	8364964	chr8:8364964:T:C	rs2030279	T	C	C	Sox1_MA0870.1	10	1	+	8.057514258833448	1.2488171746971153	GACAATTTCCTTGTT
chr8	8374174	8374175	chr8:8374175:A:G	rs13280051	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr8	8451497	8451498	chr8:8451498:T:C	rs2979162	T	C	T	Sox1_MA0870.1	19	0	-	0	0	.
chr8	8451503	8451504	chr8:8451504:A:G	rs2976866	A	G	A	Sox1_MA0870.1	13	1	-	8.163340053085221	5.985684755634227	CACAATTTCATTCTT
chr8	8662540	8662541	chr8:8662541:T:C	rs7813831	T	C	C	Sox1_MA0870.1	1	1	-	6.26194673486851	2.1636560794753676	TACAACATCATTGCT
chr8	8749496	8749497	chr8:8749497:C:T	rs76298333	C	T	c	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	8749500	8749501	chr8:8749501:C:T	rs4841030	C	T	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	9009900	9009901	chr8:9009901:G:C	rs2915251	G	C	G	Sox1_MA0870.1	2	1	-	8.597660204699503	1.6889054253842812	TTCACTATCATTGTC
chr8	9022979	9022980	chr8:9022980:A:T	rs78550140	A	T	A	Sox1_MA0870.1	4	1	+	8.543148830759357	1.7655705765891687	TACCATACCATTGTG
chr8	9023004	9023005	chr8:9023005:T:G	rs74524526	T	G	t	Sox1_MA0870.1	29	0	+	0	0	.
chr8	9350488	9350489	chr8:9350489:C:T	rs78210623	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr8	9436030	9436031	chr8:9436031:C:T	rs11989460	C	T	C	Sox1_MA0870.1	8	1	+	4.8166091165745435	0.6349995699372605	GACACTTACCTTGTG
chr8	9790092	9790093	chr8:9790093:C:T	rs2898223	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr8	9873959	9873960	chr8:9873960:T:C	rs13268133	T	C	T	Sox1_MA0870.1	4	1	-	7.233811156737581	0.45623290256739235	AACAATTCCGTTGCT
chr8	10150030	10150031	chr8:10150031:C:T	rs146581287	C	T	c	Sox1_MA0870.1	21	0	+	0	0	.
chr8	10217862	10217863	chr8:10217863:C:T	rs12548393	C	T	c	Sox1_MA0870.1	18	0	-	0	0	.
chr8	10300905	10300906	chr8:10300906:T:C	rs34028848	T	C	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	10300917	10300918	chr8:10300918:A:G	rs7822305	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	10417316	10417317	chr8:10417317:T:G	rs17710558	T	G	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr8	10520727	10520728	chr8:10520728:G:A	rs12677569	G	A	g	Sox1_MA0870.1	12	1	+	3.2226960270878418	-3.6860587522273787	AACAATGGCAGCGGG
chr8	10520745	10520746	chr8:10520746:G:A	rs35483889	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr8	10539535	10539536	chr8:10539536:T:G	rs4077605	T	G	T	Sox1_MA0870.1	-16	0	-	0	0	.
chr8	10777786	10777787	chr8:10777787:T:C	rs2116095	T	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr8	10943626	10943627	chr8:10943627:A:G	rs7833435	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr8	10975354	10975355	chr8:10975355:A:G	rs6601542	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	10975382	10975383	chr8:10975383:C:T	rs77412214	C	T	C	Sox1_MA0870.1	23	0	+	0	0	.
chr8	11013536	11013537	chr8:11013537:A:G	rs6990395	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	11280310	11280311	chr8:11280311:C:T	rs2572419	C	T	T	Sox1_MA0870.1	15	0	-	0	0	.
chr8	11295535	11295536	chr8:11295536:T:C	rs2117615	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr8	11506274	11506275	chr8:11506275:A:T	rs2280805	A	T	A	Sox1_MA0870.1	9	1	+	3.0910272003992394	-3.8177275789159815	GACAATGCCAGGGCT
chr8	11692274	11692275	chr8:11692275:T:C	rs73537803	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr8	11733626	11733627	chr8:11733627:C:A	rs6983129	C	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	11754871	11754872	chr8:11754872:T:C	rs13273672	T	C	C	Sox1_MA0870.1	9	1	-	6.134182207027434	-0.7745725722877858	ATCAATTCCATTTTT
chr8	11764783	11764784	chr8:11764784:C:T	rs1004712	C	T	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr8	11791279	11791280	chr8:11791280:G:A	rs2740444	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr8	11877365	11877366	chr8:11877366:G:A	rs1620833	G	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	11878429	11878430	chr8:11878430:C:A	rs880632	C	A	C	Sox1_MA0870.1	4	1	+	5.122838105948762	7.079651040573978	AACACAGGCATTGCC
chr8	12028517	12028518	chr8:12028518:A:G	rs13278012	A	G	.	Sox1_MA0870.1	32	0	-	0	0	.
chr8	12126553	12126554	chr8:12126554:T:A	rs149407283	T	A	T	Sox1_MA0870.1	5	1	-	6.356829761375064	11.375959774685597	TACAAAATCAGTGTG
chr8	12433905	12433906	chr8:12433906:C:A	rs80169473	C	A	.	Sox1_MA0870.1	31	0	-	0	0	.
chr8	12693172	12693173	chr8:12693173:G:A	rs6530926	G	A	.	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	12771868	12771869	chr8:12771869:C:T	rs35649296	C	T	C	Sox1_MA0870.1	8	1	+	11.130094609009134	6.948485062371852	ATCAATTTCATTGTA
chr8	12810294	12810295	chr8:12810295:G:C	rs11773992	G	C	G	Sox1_MA0870.1	2	1	-	5.729648500246498	-1.1791062790687241	GACAATAGCATTTAT
chr8	12872731	12872732	chr8:12872732:A:T	rs2956736	A	T	T	Sox1_MA0870.1	10	1	-	4.317582527336145	-2.4911145568001873	AGCACTATCATTTTT
chr8	12872737	12872738	chr8:12872738:G:A	rs34110297	G	A	G	Sox1_MA0870.1	4	1	-	4.317582527336145	-0.5031827922088264	AGCACTATCATTTTT
chr8	12929219	12929220	chr8:12929220:G:C	rs2977149	G	C	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	12973159	12973160	chr8:12973160:A:G	rs28492847	A	G	A	Sox1_MA0870.1	1	1	+	6.030296307922134	1.932005652528993	CAGAATTGCATTGCT
chr8	12976852	12976853	chr8:12976853:C:G	rs2466254	C	G	G	Sox1_MA0870.1	-17	0	+	0	0	.
chr8	12976855	12976856	chr8:12976856:A:G	rs75021555	A	G	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr8	12976899	12976900	chr8:12976900:T:C	rs12541930	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr8	13047463	13047464	chr8:13047464:T:C	rs552366	T	C	T	Sox1_MA0870.1	3	1	-	4.171073572094969	-2.7295160951022566	ACCAATTACCTTGTA
chr8	13253886	13253887	chr8:13253887:T:C	rs1305584172	T	C	T	Sox1_MA0870.1	13	1	+	5.89520367930727	3.7175483818562767	AACAAAAACACTGTT
chr8	13366467	13366468	chr8:13366468:G:C	rs10094334	G	C	G	Sox1_MA0870.1	8	1	+	5.967474013991449	9.737977006891786	AACACTATGAGTGAT
chr8	13368587	13368588	chr8:13368588:G:A	rs183789710	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr8	13437620	13437621	chr8:13437621:A:G	rs564984671	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	13455350	13455351	chr8:13455351:A:C	rs78763857	A	C	A	Sox1_MA0870.1	15	0	-	0	0	.
chr8	13455380	13455381	chr8:13455381:A:G	rs289548	A	G	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	13472664	13472665	chr8:13472665:A:C	rs117170309	A	C	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	13472670	13472671	chr8:13472671:G:A	rs11783934	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	13571628	13571629	chr8:13571629:C:T	rs11775957	C	T	T	Sox1_MA0870.1	15	0	+	0	0	.
chr8	13581160	13581161	chr8:13581161:C:A	rs13254681	C	A	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	13581233	13581234	chr8:13581234:A:T	rs13256026	A	T	A	Sox1_MA0870.1	-13	0	+	0	0	.
chr8	13601386	13601387	chr8:13601387:T:A	rs28379779	T	A	T	Sox1_MA0870.1	33	0	-	0	0	.
chr8	13640501	13640502	chr8:13640502:C:T	rs7014659	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr8	13640533	13640534	chr8:13640534:G:A	rs28565094	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	13662595	13662596	chr8:13662596:A:G	rs17116999	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	13673524	13673525	chr8:13673525:C:T	rs1481582	C	T	-	Sox1_MA0870.1	12	1	-	5.58008506904209	-1.3286697102731297	TACAAATTGATTGTT
chr8	14038220	14038221	chr8:14038221:A:G	rs1485543	A	G	A	Sox1_MA0870.1	10	1	+	6.537715660546004	11.105287816118777	CACAATTTCAATGTG
chr8	14229774	14229775	chr8:14229775:G:T	rs9657231	G	T	G	Sox1_MA0870.1	8	1	-	5.164027125708828	-0.729142528609386	AGCAATTACAGTGAA
chr8	14235174	14235175	chr8:14235175:C:A	rs17213822	C	A	C	Sox1_MA0870.1	25	0	+	0	0	.
chr8	14776275	14776276	chr8:14776276:G:T	rs73531196	G	T	G	Sox1_MA0870.1	26	0	-	0	0	.
chr8	14844867	14844868	chr8:14844868:G:A	rs78319879	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr8	15023526	15023527	chr8:15023527:T:C	rs7388371	T	C	C	Sox1_MA0870.1	20	0	-	0	0	.
chr8	15027039	15027040	chr8:15027040:C:T	rs4631467	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	15325401	15325402	chr8:15325402:C:T	rs75263565	C	T	C	Sox1_MA0870.1	8	1	+	4.19589424231354	0.014284695676257897	TTCACTGGCAGTGCT
chr8	15325415	15325416	chr8:15325416:G:A	rs10093109	G	A	A	Sox1_MA0870.1	22	0	+	0	0	.
chr8	15457445	15457446	chr8:15457446:C:T	rs1495081	C	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	15505348	15505349	chr8:15505349:A:G	rs76934792	A	G	A	Sox1_MA0870.1	10	1	-	5.7085978034220295	-1.100099280714304	CACAATGCCATTATA
chr8	15505356	15505357	chr8:15505357:G:C	rs565616058	G	C	G	Sox1_MA0870.1	2	1	-	5.7085978034220295	-1.2001569758931914	CACAATGCCATTATA
chr8	15582559	15582560	chr8:15582560:G:A	rs1429085	G	A	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	15765148	15765149	chr8:15765149:T:C	rs2278947	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr8	15949837	15949838	chr8:15949838:C:T	rs76118903	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr8	16017837	16017838	chr8:16017838:C:A	rs76257177	C	A	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	16017842	16017843	chr8:16017843:C:A	rs75089071	C	A	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	16416499	16416500	chr8:16416500:A:G	rs75701261	A	G	a	Sox1_MA0870.1	31	0	+	0	0	.
chr8	16587215	16587216	chr8:16587216:A:G	rs10503583	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr8	16712610	16712611	chr8:16712611:A:G	rs562919239	A	G	A	Sox1_MA0870.1	11	1	-	6.00358836474328	1.0481933789329463	TCCAATAAGAGTGTT
chr8	16712614	16712615	chr8:16712615:T:C	rs17584412	T	C	C	Sox1_MA0870.1	7	1	-	6.00358836474328	5.606610036946773	TCCAATAAGAGTGTT
chr8	16728102	16728103	chr8:16728103:A:G	rs75698107	A	G	A	Sox1_MA0870.1	3	1	-	4.49942410000947	4.927954481048632	AACTATAGCAGTGAG
chr8	16746384	16746385	chr8:16746385:G:C	rs13270993	G	C	G	Sox1_MA0870.1	10	1	+	6.706336431098739	2.1387642755259653	ACCACTGACAGTGTC
chr8	16779977	16779978	chr8:16779978:T:G	rs144371966	T	G	T	Sox1_MA0870.1	7	1	-	5.558490294392831	5.1287294668567895	TACAATTATATTGAG
chr8	16779991	16779992	chr8:16779992:G:C	rs117062586	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr8	16799811	16799812	chr8:16799812:A:G	rs652078	A	G	A	Sox1_MA0870.1	3	1	+	4.532283403391883	-2.368306263805344	CACAATTACATAGCA
chr8	16909663	16909664	chr8:16909664:G:T	rs13269520	G	T	G	Sox1_MA0870.1	33	0	+	0	0	.
chr8	17024394	17024395	chr8:17024395:C:G	rs79432701	C	G	C	Sox1_MA0870.1	27	0	-	0	0	.
chr8	17094294	17094295	chr8:17094295:T:C	rs72607370	T	C	T	Sox1_MA0870.1	10	1	+	4.4453932409732975	-2.3633038431630355	TCCCATTACATTGTC
chr8	17105852	17105853	chr8:17105853:A:T	rs1851712	A	T	A	Sox1_MA0870.1	16	0	+	0	0	.
chr8	17320424	17320425	chr8:17320425:A:G	rs756604	A	G	A	Sox1_MA0870.1	14	1	-	4.4388112205286285	2.927801816047224	CCCAATTGCCTTGTT
chr8	17334560	17334561	chr8:17334561:A:T	rs2269691	A	T	T	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	17406315	17406316	chr8:17406316:A:G	rs78739229	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr8	17532359	17532360	chr8:17532360:G:C	rs2588226	G	C	G	Sox1_MA0870.1	0	1	-	3.4556026653812015	3.3497768711294285	CACACTGGGATTGGG
chr8	17577830	17577831	chr8:17577831:C:T	rs35784756	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr8	17577831	17577832	chr8:17577832:C:T	rs140993366	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr8	17596964	17596965	chr8:17596965:T:A	rs2246480	T	A	T	Sox1_MA0870.1	3	1	-	3.1946238801145572	-2.3196714259627784	AACACTGTCATAGCC
chr8	17596964	17596965	chr8:17596965:T:C	chr8:17596965:T:C	T	C	T	Sox1_MA0870.1	3	1	-	3.1946238801145572	-3.7059657870826683	AACACTGTCATAGCC
chr8	17649002	17649003	chr8:17649003:G:A	rs188124949	G	A	G	Sox1_MA0870.1	12	1	+	9.574525507763607	2.665770728448386	CACACTAACATCGTT
chr8	17686620	17686621	chr8:17686621:C:T	rs3862094	C	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	17686664	17686665	chr8:17686665:T:G	rs3862095	T	G	T	Sox1_MA0870.1	32	0	+	0	0	.
chr8	17802929	17802930	chr8:17802930:T:C	rs112617450	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	17859438	17859439	chr8:17859439:T:C	rs11203922	T	C	t	Sox1_MA0870.1	16	0	-	0	0	.
chr8	17864666	17864667	chr8:17864667:C:T	rs1386912833	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	17922447	17922448	chr8:17922448:G:A	rs74612948	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr8	17922465	17922466	chr8:17922466:T:C	rs7836950	T	C	T	Sox1_MA0870.1	3	1	-	4.741335574686386	-2.15925409251084	GACACTTACAATGTA
chr8	18053267	18053268	chr8:18053268:G:T	rs10112108	G	T	G	Sox1_MA0870.1	30	0	-	0	0	.
chr8	18085154	18085155	chr8:18085155:G:C	rs1557600	G	C	G	Sox1_MA0870.1	22	0	-	0	0	.
chr8	18088308	18088309	chr8:18088309:A:G	rs11203935	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr8	18124706	18124707	chr8:18124707:C:T	rs7822438	C	T	T	Sox1_MA0870.1	14	1	+	3.750753360211571	5.261762764692976	GACACTTAGAGTGCC
chr8	18306728	18306729	chr8:18306729:T:C	rs58057772	T	C	T	Sox1_MA0870.1	30	0	+	0	0	.
chr8	18400343	18400344	chr8:18400344:T:C	rs1801280	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr8	18403087	18403088	chr8:18403088:G:A	rs4646250	G	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr8	18676747	18676748	chr8:18676748:T:A	rs11774964	T	A	T	Sox1_MA0870.1	5	1	+	5.953905891339948	0.9347758780294138	AACAATATCTGTGCT
chr8	18676774	18676775	chr8:18676775:A:C	rs10087403	A	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr8	18768774	18768775	chr8:18768775:T:C	rs13264337	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr8	18808365	18808366	chr8:18808366:C:G	rs12549141	C	G	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	18957917	18957918	chr8:18957918:C:T	rs74829276	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr8	19132971	19132972	chr8:19132972:C:T	rs28530764	C	T	T	Sox1_MA0870.1	24	0	-	0	0	.
chr8	19136372	19136373	chr8:19136373:C:T	rs662032	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr8	19141743	19141744	chr8:19141744:C:A	rs11778029	C	A	C	Sox1_MA0870.1	18	0	-	0	0	.
chr8	19141765	19141766	chr8:19141766:C:A	rs333031	C	A	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	19199657	19199658	chr8:19199658:T:C	rs9657496	T	C	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	19434959	19434960	chr8:19434960:G:C	rs7822046	G	C	C	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	19584296	19584297	chr8:19584297:C:T	rs115989737	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	19796616	19796617	chr8:19796617:G:A	rs6995945	G	A	A	Sox1_MA0870.1	7	1	+	4.425118940617574	4.822097268414082	AATAAATGCATTGTT
chr8	19848660	19848661	chr8:19848661:A:T	rs4520184	A	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	19880748	19880749	chr8:19880749:G:A	rs6586876	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr8	19898465	19898466	chr8:19898466:G:T	rs12543154	G	T	G	Sox1_MA0870.1	27	0	+	0	0	.
chr8	20091464	20091465	chr8:20091465:C:A	rs183237593	C	A	C	Sox1_MA0870.1	7	1	-	7.569755143021714	7.525143590733807	GACAAGAGCATTGTC
chr8	20192216	20192217	chr8:20192217:G:T	rs71510685	G	T	G	Sox1_MA0870.1	2	1	-	5.286921192316328	-1.6218335869988914	AACCATATCCTTGTT
chr8	20227097	20227098	chr8:20227098:A:G	rs138193053	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	20437427	20437428	chr8:20437428:C:T	rs999746	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	20916977	20916978	chr8:20916978:G:C	rs6988989	G	C	C	Sox1_MA0870.1	26	0	-	0	0	.
chr8	20934842	20934843	chr8:20934843:G:C	rs7002145	G	C	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr8	20989820	20989821	chr8:20989821:A:G	rs12114032	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	21558075	21558076	chr8:21558076:A:G	rs966113	A	G	G	Sox1_MA0870.1	11	1	-	7.629800602000086	2.6744056161897523	AACAGTTTCATTGTA
chr8	21578256	21578257	chr8:21578257:G:A	rs116212795	G	A	g	Sox1_MA0870.1	14	1	-	5.168798360881302	6.679807765362708	AACACTAACTTTGCC
chr8	21935046	21935047	chr8:21935047:G:A	rs188970436	G	A	G	Sox1_MA0870.1	0	1	+	6.332289011481239	7.674412154287993	GACATTTGCATTGTA
chr8	21948501	21948502	chr8:21948502:T:A	rs182544764	T	A	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr8	21968909	21968910	chr8:21968910:C:T	rs6557712	C	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr8	22109837	22109838	chr8:22109838:G:A	rs7831322	G	A	g	Sox1_MA0870.1	15	0	+	0	0	.
chr8	22172024	22172025	chr8:22172025:A:G	rs79210878	A	G	A	Sox1_MA0870.1	3	1	+	3.4892332484585253	-3.411356418738702	AACACTAACCTTGGG
chr8	22190721	22190722	chr8:22190722:T:C	rs73225853	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	22203849	22203850	chr8:22203850:T:C	chr8:22203850:T:C	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	22304977	22304978	chr8:22304978:A:G	rs78323775	A	G	G	Sox1_MA0870.1	0	1	-	7.449624618539088	8.152001375686567	TACACTACGATTGCT
chr8	22349856	22349857	chr8:22349857:T:C	rs79021774	T	C	C	Sox1_MA0870.1	4	1	-	4.641697772457352	-2.135880481712835	TTCAATGGCAGTGCC
chr8	22411177	22411178	chr8:22411178:C:G	rs7814612	C	G	G	Sox1_MA0870.1	25	0	-	0	0	.
chr8	22744122	22744123	chr8:22744123:A:G	rs11780367	A	G	A	Sox1_MA0870.1	4	1	+	5.631438129870458	-1.1461401242997302	CCCAATTTGATTGTA
chr8	22746046	22746047	chr8:22746047:C:T	rs4872542	C	T	T	Sox1_MA0870.1	8	1	+	5.710148106127518	1.5285385594902334	AACCAAAGCATTGTC
chr8	22876550	22876551	chr8:22876551:C:T	rs117629491	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	22903172	22903173	chr8:22903173:C:T	rs12545333	C	T	C	Sox1_MA0870.1	30	0	-	0	0	.
chr8	23067740	23067741	chr8:23067741:A:G	rs571388484	A	G	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	23067741	23067742	chr8:23067742:T:G	rs143206963	T	G	T	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	23286720	23286721	chr8:23286721:C:T	rs4872101	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	23352922	23352923	chr8:23352923:G:A	rs4872109	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr8	23401262	23401263	chr8:23401263:A:G	rs17089189	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	23497945	23497946	chr8:23497946:G:A	rs7813840	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr8	23660544	23660545	chr8:23660545:C:T	rs7006278	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr8	23660588	23660589	chr8:23660589:A:G	rs17089500	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	23877335	23877336	chr8:23877336:A:G	rs4872203	A	G	G	Sox1_MA0870.1	3	1	+	4.84878506793	-2.0518045992672254	CACATTATCAGTGCT
chr8	23890906	23890907	chr8:23890907:C:T	rs34861762	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr8	23910691	23910692	chr8:23910692:A:G	rs182182689	A	G	A	Sox1_MA0870.1	9	1	+	3.8935708835935525	-3.0151838957216683	GCCACTATCAGTGCA
chr8	24078057	24078058	chr8:24078058:A:C	rs7845241	A	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	24229544	24229545	chr8:24229545:T:C	rs190358543	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	24296426	24296427	chr8:24296427:A:T	rs11995783	A	T	A	Sox1_MA0870.1	24	0	+	0	0	.
chr8	24296432	24296433	chr8:24296433:C:T	rs62502708	C	T	c	Sox1_MA0870.1	30	0	+	0	0	.
chr8	24296935	24296936	chr8:24296936:G:A	rs62502710	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr8	24384390	24384391	chr8:24384391:T:C	rs12334642	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	24406443	24406444	chr8:24406444:G:C	rs13259526	G	C	G	Sox1_MA0870.1	8	1	-	7.900843190695735	4.130340197795398	AACACTGGCAGTGCC
chr8	24634163	24634164	chr8:24634164:G:A	rs2720732	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr8	24784598	24784599	chr8:24784599:C:T	rs2245382	C	T	c	Sox1_MA0870.1	-13	0	-	0	0	.
chr8	24951553	24951554	chr8:24951554:C:T	rs2979704	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr8	25088441	25088442	chr8:25088442:T:C	rs67218646	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	25179976	25179977	chr8:25179977:G:A	rs2979823	G	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr8	25378076	25378077	chr8:25378077:G:A	rs2709624	G	A	A	Sox1_MA0870.1	22	0	-	0	0	.
chr8	25378081	25378082	chr8:25378082:C:G	rs111902374	C	G	C	Sox1_MA0870.1	17	0	-	0	0	.
chr8	25690566	25690567	chr8:25690567:A:G	rs17054185	A	G	A	Sox1_MA0870.1	4	1	+	7.522452356166369	0.7448741019961808	GGCAATTTCATTGAT
chr8	25905478	25905479	chr8:25905479:T:G	rs56919067	T	G	T	Sox1_MA0870.1	18	0	-	0	0	.
chr8	25919919	25919920	chr8:25919920:C:T	rs11135903	C	T	T	Sox1_MA0870.1	7	1	-	4.141351716798274	4.538330044594782	AGTAATAGCATTGCT
chr8	26080660	26080661	chr8:26080661:C:T	rs4871965	C	T	C	Sox1_MA0870.1	12	1	-	7.764659899816795	0.855905120501574	AACAATGACCTTGTC
chr8	26110929	26110930	chr8:26110930:A:G	rs2976331	A	G	A	Sox1_MA0870.1	14	1	-	9.411466454188576	7.900457049707171	AACAATTCCATTCTT
chr8	26157758	26157759	chr8:26157759:A:C	rs80169010	A	C	A	Sox1_MA0870.1	4	1	+	4.488853968117774	2.532041033492559	AACAATTGCATCATT
chr8	26196045	26196046	chr8:26196046:C:T	rs13250131	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr8	26202156	26202157	chr8:26202157:C:T	rs12674998	C	T	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	26213594	26213595	chr8:26213595:G:A	rs4521767	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr8	26251524	26251525	chr8:26251525:G:A	rs11135928	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr8	26290632	26290633	chr8:26290633:G:C	rs917231134	G	C	G	Sox1_MA0870.1	27	0	-	0	0	.
chr8	26324056	26324057	chr8:26324057:A:T	rs17247110	A	T	A	Sox1_MA0870.1	31	0	+	0	0	.
chr8	26483736	26483737	chr8:26483737:T:C	rs10101608	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr8	26609343	26609344	chr8:26609344:C:A	rs11775967	C	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	26839539	26839540	chr8:26839540:T:C	rs574647	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr8	26899870	26899871	chr8:26899871:G:T	rs73569910	G	T	G	Sox1_MA0870.1	0	1	-	4.077009707040633	5.313307055595615	CACAATACCATTTAG
chr8	26901449	26901450	chr8:26901450:C:T	rs9644123	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	27126485	27126486	chr8:27126486:C:T	rs73237453	C	T	C	Sox1_MA0870.1	12	1	-	4.3789328835587975	-2.5298218957564225	AACACTAGTAATGTT
chr8	27356662	27356663	chr8:27356663:A:G	rs114946623	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr8	27386782	27386783	chr8:27386783:A:G	rs11776858	A	G	G	Sox1_MA0870.1	11	1	-	10.763130531426158	5.807735545615824	AACAAAACCATTGTC
chr8	27493647	27493648	chr8:27493648:G:C	rs62504269	G	C	G	Sox1_MA0870.1	16	0	-	0	0	.
chr8	27617126	27617127	chr8:27617127:A:C	chr8:27617127:A:C	A	C	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	27786009	27786010	chr8:27786010:G:A	rs28754813	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr8	27939856	27939857	chr8:27939857:T:C	rs2726955	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	27966314	27966315	chr8:27966315:G:A	rs11780263	G	A	G	Sox1_MA0870.1	9	1	-	5.3780861376555364	5.3780861376555364	AACACTGCCCTTGTC
chr8	27974648	27974649	chr8:27974649:A:G	rs2727006	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	28001903	28001904	chr8:28001904:C:T	rs56858294	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	28008804	28008805	chr8:28008805:T:C	rs7831209	T	C	C	Sox1_MA0870.1	18	0	+	0	0	.
chr8	28016964	28016965	chr8:28016965:A:C	rs79144503	A	C	A	Sox1_MA0870.1	-14	0	+	0	0	.
chr8	28033760	28033761	chr8:28033761:G:A	rs7015759	G	A	G	Sox1_MA0870.1	7	1	+	3.816910146293249	4.213888474089757	TAGAATTGCATTGCC
chr8	28258042	28258043	chr8:28258043:A:C	rs71519674	A	C	A	Sox1_MA0870.1	21	0	-	0	0	.
chr8	28341529	28341530	chr8:28341530:C:T	rs60950192	C	T	C	Sox1_MA0870.1	6	1	-	4.021690016096856	5.560296709237575	AACATTGCCATCGTT
chr8	28368499	28368500	chr8:28368500:G:A	rs17059034	G	A	g	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	28374449	28374450	chr8:28374450:C:T	rs1978676	C	T	C	Sox1_MA0870.1	14	1	-	4.15417687366435	3.978845636597306	GAAAATTTCATTGCG
chr8	28374480	28374481	chr8:28374481:T:A	rs1978677	T	A	A	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	28419785	28419786	chr8:28419786:C:T	rs146467514	C	T	C	Sox1_MA0870.1	1	1	+	6.057829367051906	6.549685504735265	TCCAATGACAGTGCT
chr8	28474844	28474845	chr8:28474845:T:C	rs10087762	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	28504941	28504942	chr8:28504942:C:T	rs7842884	C	T	T	Sox1_MA0870.1	4	1	+	4.251051139148126	-0.5697141803968458	GACACTGACATTCTG
chr8	28705216	28705217	chr8:28705217:G:A	rs140269142	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr8	29283098	29283099	chr8:29283099:C:A	rs677485	C	A	C	Sox1_MA0870.1	16	0	-	0	0	.
chr8	29283104	29283105	chr8:29283105:T:C	rs76239329	T	C	T	Sox1_MA0870.1	10	1	-	4.857234057446904	9.424806213019675	TACAATACCAATGCC
chr8	29551641	29551642	chr8:29551642:A:G	rs13273498	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	29555331	29555332	chr8:29555332:T:C	rs6998142	T	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr8	29575734	29575735	chr8:29575735:C:T	rs56346320	C	T	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	29663896	29663897	chr8:29663897:T:C	rs112472431	T	C	C	Sox1_MA0870.1	22	0	-	0	0	.
chr8	29663936	29663937	chr8:29663937:A:C	rs4732699	A	C	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	29685450	29685451	chr8:29685451:A:G	rs145340002	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr8	29778963	29778964	chr8:29778964:G:T	rs10102208	G	T	T	Sox1_MA0870.1	28	0	-	0	0	.
chr8	29886961	29886962	chr8:29886962:G:A	rs118136238	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	29975313	29975314	chr8:29975314:G:A	rs550664958	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	29975342	29975343	chr8:29975343:A:G	rs6985480	A	G	A	Sox1_MA0870.1	9	1	+	4.088731151669014	-2.820023627646206	AACATTTACAGTGGT
chr8	29975346	29975347	chr8:29975347:G:A	rs10101135	G	A	G	Sox1_MA0870.1	13	1	+	4.088731151669014	4.385752851716928	AACATTTACAGTGGT
chr8	30269191	30269192	chr8:30269192:G:A	rs7822547	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr8	30278236	30278237	chr8:30278237:A:T	rs75551494	A	T	A	Sox1_MA0870.1	1	1	+	2.983964527332212	-0.29331971982892757	GACCCTGGCAGTGCT
chr8	30317447	30317448	chr8:30317448:C:T	rs11996929	C	T	T	Sox1_MA0870.1	8	1	+	11.403237225954435	7.221627679317151	AACAATAACAGTGCA
chr8	30362150	30362151	chr8:30362151:A:G	rs4733483	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr8	30549447	30549448	chr8:30549448:A:G	rs974337804	A	G	A	Sox1_MA0870.1	14	1	-	6.054111375051043	4.543101970569639	AACAATTTCATTTAT
chr8	30722230	30722231	chr8:30722231:G:T	rs6996579	G	T	G	Sox1_MA0870.1	13	1	+	5.263740538523933	8.906288265161006	AACAATAGCATTTGC
chr8	30722235	30722236	chr8:30722236:C:T	rs2472219	C	T	C	Sox1_MA0870.1	18	0	+	0	0	.
chr8	30814288	30814289	chr8:30814289:T:C	rs6996100	T	C	T	Sox1_MA0870.1	9	1	-	8.859381334633026	1.9506265553178062	AACACTGACATTGGG
chr8	31075098	31075099	chr8:31075099:C:G	rs2725383	C	G	G	Sox1_MA0870.1	0	1	+	3.7304002703228556	3.6245744760710825	CTCACTGGCAGTGAT
chr8	31075108	31075109	chr8:31075109:G:C	rs2737320	G	C	G	Sox1_MA0870.1	10	1	+	3.7304002703228556	-0.8371718852499176	CTCACTGGCAGTGAT
chr8	31311868	31311869	chr8:31311869:G:T	rs11780710	G	T	G	Sox1_MA0870.1	32	0	-	0	0	.
chr8	31319830	31319831	chr8:31319831:C:T	rs16877899	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr8	31604060	31604061	chr8:31604061:G:A	rs28489590	G	A	G	Sox1_MA0870.1	0	1	+	5.306034141991157	6.648157284797911	GCCAATAGCATTTTT
chr8	31952905	31952906	chr8:31952906:T:C	rs406422	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr8	32334750	32334751	chr8:32334751:G:C	rs73248796	G	C	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr8	32571416	32571417	chr8:32571417:C:T	rs4733361	C	T	C	Sox1_MA0870.1	11	1	+	4.454178792581047	9.409573778391382	GTCAATGCCATCGTG
chr8	32581204	32581205	chr8:32581205:C:G	rs4302803	C	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	32664607	32664608	chr8:32664608:A:T	rs2919394	A	T	A	Sox1_MA0870.1	28	0	+	0	0	.
chr8	32692387	32692388	chr8:32692388:T:C	rs73675420	T	C	T	Sox1_MA0870.1	32	0	-	0	0	.
chr8	32842824	32842825	chr8:32842825:T:C	rs10503931	T	C	C	Sox1_MA0870.1	9	1	-	6.921878041876475	0.013123262561254179	AAGACTGGCATTGTT
chr8	32945367	32945368	chr8:32945368:C:A	rs11780587	C	A	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	33389019	33389020	chr8:33389020:A:G	rs16880849	A	G	A	Sox1_MA0870.1	14	1	-	7.106937905833593	5.595928501352189	GACAATTACATCGAT
chr8	33389043	33389044	chr8:33389044:G:A	rs16880851	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	33594299	33594300	chr8:33594300:T:C	rs75386451	T	C	T	Sox1_MA0870.1	9	1	-	3.965402189896444	-2.9433525894187764	CACACTTTCAGTTTT
chr8	33770908	33770909	chr8:33770909:T:C	rs16881216	T	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	34038929	34038930	chr8:34038930:T:C	rs12682471	T	C	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	34462575	34462576	chr8:34462576:T:C	rs7840167	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr8	34666960	34666961	chr8:34666961:T:C	rs4455823	T	C	C	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	34666994	34666995	chr8:34666995:C:T	rs16882722	C	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr8	35615345	35615346	chr8:35615346:C:T	rs16884195	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	36981671	36981672	chr8:36981672:C:G	rs2970652	C	G	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr8	36981702	36981703	chr8:36981703:C:T	rs2970653	C	T	T	Sox1_MA0870.1	27	0	+	0	0	.
chr8	36994666	36994667	chr8:36994667:C:A	rs2970616	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr8	37060111	37060112	chr8:37060112:A:T	rs3015718	A	T	T	Sox1_MA0870.1	32	0	-	0	0	.
chr8	37312594	37312595	chr8:37312595:G:A	rs405459	G	A	G	Sox1_MA0870.1	8	1	-	4.342327018084092	0.1607174714468096	GTCAATATCACTGTC
chr8	37333271	37333272	chr8:37333272:T:A	rs407793	T	A	T	Sox1_MA0870.1	32	0	-	0	0	.
chr8	37358367	37358368	chr8:37358368:T:C	rs150437463	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	37364772	37364773	chr8:37364773:C:T	rs239447	C	T	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr8	37491086	37491087	chr8:37491087:G:A	rs73675815	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	38435944	38435945	chr8:38435945:G:A	rs2411256	G	A	A	Sox1_MA0870.1	12	1	+	5.7617539315847885	-1.1470008477304323	AACACTTGCTTTGTG
chr8	38435958	38435959	chr8:38435959:T:C	rs2411257	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr8	38541386	38541387	chr8:38541387:A:G	rs79359083	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr8	38705938	38705939	chr8:38705939:T:C	rs28567377	T	C	T	Sox1_MA0870.1	6	1	+	6.82364571607539	2.4074954289564894	CACAATTCTATTGCA
chr8	38718078	38718079	chr8:38718079:T:A	rs72634781	T	A	A	Sox1_MA0870.1	21	0	+	0	0	.
chr8	38878198	38878199	chr8:38878199:C:T	rs187575448	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr8	38915708	38915709	chr8:38915709:C:A	rs62504363	C	A	C	Sox1_MA0870.1	33	0	+	0	0	.
chr8	40013875	40013876	chr8:40013876:A:G	rs4321987	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	40211733	40211734	chr8:40211734:A:G	rs2980801	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr8	40266350	40266351	chr8:40266351:G:A	rs7843396	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr8	40350019	40350020	chr8:40350020:G:A	rs77043538	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr8	40418418	40418419	chr8:40418419:T:C	rs956686	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr8	40462433	40462434	chr8:40462434:C:T	rs2565068	C	T	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr8	40758469	40758470	chr8:40758470:G:A	rs4460355	G	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr8	40845847	40845848	chr8:40845848:A:G	rs7837405	A	G	A	Sox1_MA0870.1	13	1	-	4.369918857767277	2.192263560316283	GGCTCTATCATTGTT
chr8	40887660	40887661	chr8:40887661:A:G	rs78579293	A	G	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr8	41161863	41161864	chr8:41161864:T:C	rs113262729	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	41261977	41261978	chr8:41261978:T:C	rs4736958	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr8	41916878	41916879	chr8:41916879:G:C	rs2939980	G	C	G	Sox1_MA0870.1	24	0	-	0	0	.
chr8	42155820	42155821	chr8:42155821:T:C	rs59253046	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	42180222	42180223	chr8:42180223:G:A	rs185787026	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr8	42198530	42198531	chr8:42198531:C:G	rs2299609	C	G	C	Sox1_MA0870.1	26	0	-	0	0	.
chr8	42477407	42477408	chr8:42477408:G:A	rs10808961	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	42709088	42709089	chr8:42709089:C:T	rs78428120	C	T	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	43199281	43199282	chr8:43199282:T:G	rs117086996	T	G	T	Sox1_MA0870.1	3	1	-	8.326443537782977	3.2406786127448024	TGCACTTCCATTGTT
chr8	43614603	43614604	chr8:43614604:G:A	rs9801848	G	A	-	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	44751234	44751235	chr8:44751235:T:C	rs1370217137	T	C	.	Sox1_MA0870.1	1	1	-	9.77272874958778	5.674438094194638	TACAATAAGAGTGTT
chr8	46484390	46484391	chr8:46484391:A:T	rs7836208	A	T	.	Sox1_MA0870.1	-13	0	-	0	0	.
chr8	46823886	46823887	chr8:46823887:A:G	rs17061727	A	G	A	Sox1_MA0870.1	3	1	-	5.602821562589815	6.031351943628975	CACTATTCCAGTGTG
chr8	47261779	47261780	chr8:47261780:C:T	rs72644587	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	47508976	47508977	chr8:47508977:T:C	rs4536257	T	C	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	47522620	47522621	chr8:47522621:A:G	rs915309560	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr8	47540232	47540233	chr8:47540233:G:A	rs62539108	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	48156934	48156935	chr8:48156935:T:C	rs72633944	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr8	48265038	48265039	chr8:48265039:C:A	rs141030141	C	A	C	Sox1_MA0870.1	-8	0	-	0	0	.
chr8	48288440	48288441	chr8:48288441:C:T	rs71527698	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	48318990	48318991	chr8:48318991:C:T	chr8:48318991:C:T	C	T	C	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	48636396	48636397	chr8:48636397:C:T	rs4582590	C	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	48661617	48661618	chr8:48661618:A:G	rs13278011	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr8	48705207	48705208	chr8:48705208:C:T	rs16938602	C	T	C	Sox1_MA0870.1	2	1	+	5.311513425959982	-1.5972413533552388	GACCATAGCAGTGAT
chr8	49062761	49062762	chr8:49062762:A:T	rs1511365	A	T	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	49340402	49340403	chr8:49340403:C:T	rs1519835	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr8	49703626	49703627	chr8:49703627:A:C	rs2029897	A	C	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	49703630	49703631	chr8:49703631:G:C	rs2029896	G	C	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr8	50898363	50898364	chr8:50898364:G:A	rs7018008	G	A	A	Sox1_MA0870.1	24	0	-	0	0	.
chr8	51044008	51044009	chr8:51044009:T:C	rs113115513	T	C	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	51156747	51156748	chr8:51156748:A:T	rs10086704	A	T	T	Sox1_MA0870.1	17	0	+	0	0	.
chr8	51869992	51869993	chr8:51869993:C:G	rs7011046	C	G	C	Sox1_MA0870.1	18	0	-	0	0	.
chr8	52108493	52108494	chr8:52108494:T:C	rs28582357	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr8	52391463	52391464	chr8:52391464:C:T	rs35361856	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	52423356	52423357	chr8:52423357:G:A	chr8:52423357:G:A	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr8	53078338	53078339	chr8:53078339:C:T	rs13260897	C	T	C	Sox1_MA0870.1	2	1	+	9.588742439775627	2.6799876604604074	AACAATAGGAGTGTG
chr8	53145880	53145881	chr8:53145881:T:C	rs2120559	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	53218731	53218732	chr8:53218732:T:C	rs919042	T	C	T	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	53218775	53218776	chr8:53218776:A:T	rs118081261	A	T	A	Sox1_MA0870.1	17	0	+	0	0	.
chr8	53297325	53297326	chr8:53297326:T:C	rs7823007	T	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	53582199	53582200	chr8:53582200:C:A	rs77394560	C	A	C	Sox1_MA0870.1	26	0	+	0	0	.
chr8	53843580	53843581	chr8:53843581:T:C	rs185742152	T	C	T	Sox1_MA0870.1	4	1	-	4.817333763777445	-1.9602444903927423	TACAATAAGAGCGTT
chr8	53957392	53957393	chr8:53957393:G:C	rs28707072	G	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	54150876	54150877	chr8:54150877:C:T	rs16919782	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	54279155	54279156	chr8:54279156:G:T	rs2656262	G	T	G	Sox1_MA0870.1	8	1	-	4.350125345962764	-1.5430443083554504	CAAACTTGCATTGTA
chr8	54337344	54337345	chr8:54337345:C:A	rs2719356	C	A	A	Sox1_MA0870.1	13	1	+	5.987128884847394	4.819258155709229	AACAAAAGCAGTGCA
chr8	54337362	54337363	chr8:54337363:G:A	rs1995533	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr8	54382306	54382307	chr8:54382307:T:A	rs6986393	T	A	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr8	54481708	54481709	chr8:54481709:T:G	rs1079005	T	G	G	Sox1_MA0870.1	11	1	+	6.652632933321481	-0.25009975353535097	CACCATTCCATTGAT
chr8	54913835	54913836	chr8:54913836:T:C	rs903146	T	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr8	55219196	55219197	chr8:55219197:T:C	rs75752766	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr8	55319482	55319483	chr8:55319483:A:G	rs16921601	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	55631524	55631525	chr8:55631525:A:G	rs62517982	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	56017363	56017364	chr8:56017364:A:G	rs2668013	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr8	56291249	56291250	chr8:56291250:T:A	rs13269647	T	A	T	Sox1_MA0870.1	16	0	-	0	0	.
chr8	56483060	56483061	chr8:56483061:T:A	rs1996103	T	A	T	Sox1_MA0870.1	5	1	+	3.5562932368642954	-1.462836776446239	GACAGTGCCATTGCA
chr8	56867649	56867650	chr8:56867650:T:C	rs1508094	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr8	56867670	56867671	chr8:56867671:G:A	rs1508093	G	A	G	Sox1_MA0870.1	3	1	-	7.394768877978012	6.966238496938852	TACCATTCCATTGTA
chr8	57061839	57061840	chr8:57061840:G:A	rs60074804	G	A	.	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	57305484	57305485	chr8:57305485:A:G	rs1878628	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	57424876	57424877	chr8:57424877:G:A	rs115898843	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	57890606	57890607	chr8:57890607:A:G	rs4738638	A	G	a	Sox1_MA0870.1	15	0	+	0	0	.
chr8	57997247	57997248	chr8:57997248:C:T	rs144748563	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	58066245	58066246	chr8:58066246:T:C	rs10093645	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr8	58089052	58089053	chr8:58089053:G:A	rs6471680	G	A	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	58229159	58229160	chr8:58229160:T:A	rs737145	T	A	A	Sox1_MA0870.1	23	0	-	0	0	.
chr8	58245005	58245006	chr8:58245006:A:G	rs147617050	A	G	A	Sox1_MA0870.1	0	1	+	6.382541690589679	5.040418547782925	AACTCTGCCATTGTA
chr8	58264657	58264658	chr8:58264658:A:C	rs11781385	A	C	A	Sox1_MA0870.1	9	1	+	6.360086467098112	-0.5486683122171102	CACACATACATTGCT
chr8	58310035	58310036	chr8:58310036:G:A	rs10109576	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	58310063	58310064	chr8:58310064:C:A	rs10109389	C	A	A	Sox1_MA0870.1	25	0	+	0	0	.
chr8	58324233	58324234	chr8:58324234:T:G	rs7818992	T	G	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	58543310	58543311	chr8:58543311:G:T	rs76362468	G	T	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr8	58768766	58768767	chr8:58768767:T:C	rs2634517	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr8	58880240	58880241	chr8:58880241:A:G	rs2726557	A	G	G	Sox1_MA0870.1	1	1	+	10.366653990774015	6.268363335380876	GACAATGGCATTGCA
chr8	59108451	59108452	chr8:59108452:T:A	rs897535	T	A	A	Sox1_MA0870.1	31	0	+	0	0	.
chr8	59148060	59148061	chr8:59148061:A:G	rs16924675	A	G	A	Sox1_MA0870.1	23	0	+	0	0	.
chr8	59316892	59316893	chr8:59316893:A:G	rs4237032	A	G	A	Sox1_MA0870.1	4	1	+	4.34986226795832	-2.4277159862118682	CCCAATTACAGTGGC
chr8	59320705	59320706	chr8:59320706:T:C	rs58588385	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr8	59721333	59721334	chr8:59721334:C:T	rs4338094	C	T	T	Sox1_MA0870.1	15	0	-	0	0	.
chr8	59919129	59919130	chr8:59919130:A:G	rs184694274	A	G	A	Sox1_MA0870.1	25	0	-	0	0	.
chr8	60374485	60374486	chr8:60374486:A:G	rs12677500	A	G	A	Sox1_MA0870.1	9	1	+	4.403313818726386	-2.505440960588834	ACCACAAGCATTGCT
chr8	60643865	60643866	chr8:60643866:T:G	rs7822621	T	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	60700844	60700845	chr8:60700845:T:C	rs6471894	T	C	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	60911911	60911912	chr8:60911912:G:A	rs558329919	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr8	60922749	60922750	chr8:60922750:G:A	rs150719045	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr8	60922749	60922750	chr8:60922750:G:C	chr8:60922750:G:C	G	C	G	Sox1_MA0870.1	30	0	+	0	0	.
chr8	61008174	61008175	chr8:61008175:G:C	rs4738852	G	C	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr8	61311591	61311592	chr8:61311592:T:C	rs145187932	T	C	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	61561309	61561310	chr8:61561310:G:A	rs13253460	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	61591467	61591468	chr8:61591468:C:G	rs113487937	C	G	C	Sox1_MA0870.1	16	0	+	0	0	.
chr8	61698676	61698677	chr8:61698677:C:G	rs189681712	C	G	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr8	61825907	61825908	chr8:61825908:T:C	rs993792	T	C	T	Sox1_MA0870.1	6	1	-	7.027160090765344	5.488553397624626	AACAATATCATTTAT
chr8	61843066	61843067	chr8:61843067:C:A	rs775132000	C	A	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr8	62039124	62039125	chr8:62039125:C:A	rs11998202	C	A	C	Sox1_MA0870.1	16	0	-	0	0	.
chr8	62139345	62139346	chr8:62139346:T:C	rs6980515	T	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr8	62287177	62287178	chr8:62287178:C:T	rs55748249	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr8	62350988	62350989	chr8:62350989:C:T	rs13282612	C	T	c	Sox1_MA0870.1	-17	0	+	0	0	.
chr8	62472645	62472646	chr8:62472646:G:T	rs34558126	G	T	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	62488008	62488009	chr8:62488009:C:T	rs10091239	C	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	62632074	62632075	chr8:62632075:C:T	rs16929314	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	62865793	62865794	chr8:62865794:A:G	rs7842329	A	G	.	Sox1_MA0870.1	15	0	-	0	0	.
chr8	63010312	63010313	chr8:63010313:T:A	rs10504362	T	A	T	Sox1_MA0870.1	31	0	-	0	0	.
chr8	63019374	63019375	chr8:63019375:A:C	rs4581048	A	C	C	Sox1_MA0870.1	1	1	+	6.853348170864667	3.08420778602017	GACAAAACCATTGCA
chr8	63329566	63329567	chr8:63329567:C:T	rs114172683	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr8	63543604	63543605	chr8:63543605:G:A	rs1469589	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	63704466	63704467	chr8:63704467:C:T	rs553143108	C	T	A	Sox1_MA0870.1	12	1	-	5.616037109039786	-1.2927176702754353	TACACTTCCAATGTT
chr8	63749759	63749760	chr8:63749760:G:A	rs28549862	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr8	64168561	64168562	chr8:64168562:A:G	rs2356341	A	G	G	Sox1_MA0870.1	26	0	-	0	0	.
chr8	64327503	64327504	chr8:64327504:T:A	rs13274668	T	A	T	Sox1_MA0870.1	10	1	+	7.277640013915363	0.46894292977902985	GACAAAATCATTGGT
chr8	64365168	64365169	chr8:64365169:A:T	rs298203	A	T	T	Sox1_MA0870.1	33	0	+	0	0	.
chr8	64440499	64440500	chr8:64440500:C:T	rs2577897	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	64453436	64453437	chr8:64453437:T:C	rs117610305	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr8	64477399	64477400	chr8:64477400:G:C	rs28703225	G	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr8	64575320	64575321	chr8:64575321:T:C	rs533692235	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	64630843	64630844	chr8:64630844:G:C	rs7008736	G	C	c	Sox1_MA0870.1	20	0	+	0	0	.
chr8	64695682	64695683	chr8:64695683:T:C	rs13277887	T	C	T	Sox1_MA0870.1	34	0	-	0	0	.
chr8	64695687	64695688	chr8:64695688:A:G	chr8:64695688:A:G	A	G	A	Sox1_MA0870.1	29	0	-	0	0	.
chr8	65189952	65189953	chr8:65189953:G:A	rs72658989	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	65580519	65580520	chr8:65580520:T:C	rs76074883	T	C	T	Sox1_MA0870.1	9	1	-	3.9074394899430214	-3.001315289372199	AAAAATGACATTGGG
chr8	66044120	66044121	chr8:66044121:A:G	rs73243214	A	G	A	Sox1_MA0870.1	9	1	+	5.311624162658619	-1.5971306166566017	GCCAAGAGCATTGTT
chr8	66113970	66113971	chr8:66113971:G:A	rs149784744	G	A	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr8	66113971	66113972	chr8:66113972:G:A	rs144653944	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	66114821	66114822	chr8:66114822:G:A	rs78408882	G	A	G	Sox1_MA0870.1	19	0	-	0	0	.
chr8	66459598	66459599	chr8:66459599:T:A	rs890515	T	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	66531380	66531381	chr8:66531381:A:G	chr8:66531381:A:G	A	G	A	Sox1_MA0870.1	14	1	-	5.226190614582862	3.715181210101457	TCCAATACTATTGCT
chr8	67559076	67559077	chr8:67559077:T:C	chr8:67559077:T:C	T	C	T	Sox1_MA0870.1	11	1	+	6.141429279110783	1.1860342933004484	GACTATTACAGTGTC
chr8	68010034	68010035	chr8:68010035:G:A	rs13274293	G	A	g	Sox1_MA0870.1	34	0	+	0	0	.
chr8	68135555	68135556	chr8:68135556:G:A	rs62522678	G	A	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	68640953	68640954	chr8:68640954:C:T	rs11785516	C	T	C	Sox1_MA0870.1	2	1	+	3.859576395644672	-3.0491783836705495	GACACTTTCAGTTTT
chr8	68770750	68770751	chr8:68770751:T:A	rs183644126	T	A	T	Sox1_MA0870.1	27	0	-	0	0	.
chr8	68770751	68770752	chr8:68770752:C:G	rs188302805	C	G	C	Sox1_MA0870.1	26	0	-	0	0	.
chr8	68770785	68770786	chr8:68770786:A:C	rs4299986	A	C	A	Sox1_MA0870.1	-8	0	-	0	0	.
chr8	68773770	68773771	chr8:68773771:C:G	rs7016534	C	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr8	68773800	68773801	chr8:68773801:G:A	rs11994264	G	A	G	Sox1_MA0870.1	2	1	-	5.505670094710823	-1.4030846846043974	CACAATACCATTTGT
chr8	68985135	68985136	chr8:68985136:G:A	rs17613697	G	A	G	Sox1_MA0870.1	14	1	+	8.336950138750355	8.161618901683312	AACCATAGCATTGCG
chr8	69034342	69034343	chr8:69034343:A:G	rs7350143	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	69034463	69034464	chr8:69034464:T:C	rs75476130	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr8	69267742	69267743	chr8:69267743:G:A	rs283323	G	A	G	Sox1_MA0870.1	11	1	+	3.3753391943375823	3.3753391943375823	GACACTGCCATGGCT
chr8	69506885	69506886	chr8:69506886:A:G	rs1441198	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr8	69506898	69506899	chr8:69506899:C:G	rs1441197	C	G	G	Sox1_MA0870.1	21	0	-	0	0	.
chr8	69577433	69577434	chr8:69577434:A:C	rs4737995	A	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr8	69599950	69599951	chr8:69599951:A:T	rs7846303	A	T	A	Sox1_MA0870.1	23	0	+	0	0	.
chr8	69654766	69654767	chr8:69654767:G:T	rs59388909	G	T	G	Sox1_MA0870.1	29	0	-	0	0	.
chr8	69705926	69705927	chr8:69705927:T:C	rs918004551	T	C	T	Sox1_MA0870.1	5	1	+	6.134182207027434	-0.7689825516203245	ATCAATTCCATTCTT
chr8	70194469	70194470	chr8:70194470:G:A	rs4512409	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	70404980	70404981	chr8:70404981:G:A	rs117301484	G	A	g	Sox1_MA0870.1	8	1	+	10.369279712483486	8.24661305106561	GACAATAAGAGTGTT
chr8	70670519	70670520	chr8:70670520:T:A	rs268644	T	A	t	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	70670527	70670528	chr8:70670528:G:A	rs1477943	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	70820028	70820029	chr8:70820029:T:C	rs13261712	T	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	70999882	70999883	chr8:70999883:A:G	rs2732146	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	71047079	71047080	chr8:71047080:T:C	rs77191980	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr8	71175935	71175936	chr8:71175936:A:G	rs737534	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr8	71176012	71176013	chr8:71176013:G:C	rs72652101	G	C	G	Sox1_MA0870.1	19	0	+	0	0	.
chr8	71279049	71279050	chr8:71279050:C:T	rs16937550	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr8	71280614	71280615	chr8:71280615:C:T	rs116318425	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr8	71436410	71436411	chr8:71436411:C:T	rs13264641	C	T	T	Sox1_MA0870.1	24	0	+	0	0	.
chr8	71604206	71604207	chr8:71604207:T:C	rs77331111	T	C	T	Sox1_MA0870.1	27	0	+	0	0	.
chr8	71895851	71895852	chr8:71895852:T:A	rs72657970	T	A	T	Sox1_MA0870.1	19	0	+	0	0	.
chr8	72108018	72108019	chr8:72108019:T:C	rs16938029	T	C	T	Sox1_MA0870.1	4	1	-	7.034544375734638	0.2569661215644504	AAAAATGACAGTGTT
chr8	72651790	72651791	chr8:72651791:A:G	rs1440341	A	G	G	Sox1_MA0870.1	13	1	+	10.53781731967737	10.240795619629456	TACAATAACATTGAA
chr8	72810566	72810567	chr8:72810567:G:A	rs10957619	G	A	g	Sox1_MA0870.1	4	1	-	5.000845398447075	0.18008007890210287	GACACTGGCAGTGAA
chr8	73090834	73090835	chr8:73090835:C:G	rs72655857	C	G	C	Sox1_MA0870.1	29	0	+	0	0	.
chr8	73191058	73191059	chr8:73191059:G:C	rs11775029	G	C	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	73498714	73498715	chr8:73498715:A:G	rs7844571	A	G	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	73648489	73648490	chr8:73648490:G:A	rs56046157	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr8	73756023	73756024	chr8:73756024:A:G	rs7008333	A	G	G	Sox1_MA0870.1	6	1	+	4.0722081919564115	2.533601498815694	GTCAATAGCATTCTG
chr8	73877720	73877721	chr8:73877721:G:A	rs138836581	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	73983840	73983841	chr8:73983841:A:G	rs16938752	A	G	A	Sox1_MA0870.1	9	1	+	10.417297669642409	3.5085428903271882	AAAAATAGCATTGTT
chr8	74106149	74106150	chr8:74106150:A:G	rs17326309	A	G	a	Sox1_MA0870.1	5	1	-	12.939051087237354	6.035886328589595	CACAATTGCATTGCT
chr8	74147055	74147056	chr8:74147056:G:T	rs2912302	G	T	T	Sox1_MA0870.1	24	0	-	0	0	.
chr8	74219887	74219888	chr8:74219888:C:G	rs59608008	C	G	G	Sox1_MA0870.1	2	1	+	3.354789927077188	-3.553964852238031	CACAGTGGCAGTGCT
chr8	74231269	74231270	chr8:74231270:T:C	rs4738437	T	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr8	74250890	74250891	chr8:74250891:A:T	chr8:74250891:A:T	A	T	A	Sox1_MA0870.1	4	1	-	6.452625366611901	13.23020362078209	GACATTTACATTGCT
chr8	74283795	74283796	chr8:74283796:G:A	rs148256767	G	A	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr8	74369874	74369875	chr8:74369875:G:A	rs576507808	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr8	75503536	75503537	chr8:75503537:A:G	rs2926588	A	G	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	75814511	75814512	chr8:75814512:C:G	rs2977343	C	G	C	Sox1_MA0870.1	33	0	-	0	0	.
chr8	76230167	76230168	chr8:76230168:A:T	rs60381340	A	T	A	Sox1_MA0870.1	22	0	-	0	0	.
chr8	76262581	76262582	chr8:76262582:A:G	rs115021606	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	76530212	76530213	chr8:76530213:C:T	rs577418164	C	T	C	Sox1_MA0870.1	17	0	+	0	0	.
chr8	76674299	76674300	chr8:76674300:A:C	chr8:76674300:A:C	A	C	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	76687133	76687134	chr8:76687134:T:C	rs76651026	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr8	76693400	76693401	chr8:76693401:G:C	chr8:76693401:G:C	G	C	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr8	77000371	77000372	chr8:77000372:A:T	rs12156404	A	T	A	Sox1_MA0870.1	6	1	-	5.120323776129112	6.093372491843413	GACACTTGTAGTGTC
chr8	77000389	77000390	chr8:77000390:G:A	rs1054793101	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr8	77131225	77131226	chr8:77131226:A:G	rs10086637	A	G	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr8	77767159	77767160	chr8:77767160:A:G	rs7827238	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr8	77804152	77804153	chr8:77804153:G:A	rs58450533	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	78281309	78281310	chr8:78281310:G:C	rs13278146	G	C	G	Sox1_MA0870.1	25	0	+	0	0	.
chr8	78807361	78807362	chr8:78807362:A:G	rs7007634	A	G	G	Sox1_MA0870.1	16	0	-	0	0	.
chr8	78916208	78916209	chr8:78916209:C:T	rs6983856	C	T	C	Sox1_MA0870.1	12	1	-	4.6955177139785995	-2.213237065336621	CACACTTTCCTTGTC
chr8	78986559	78986560	chr8:78986560:G:A	rs639261	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	79183600	79183601	chr8:79183601:A:G	rs62519421	A	G	A	Sox1_MA0870.1	9	1	+	4.732294626739414	-2.1764601525758063	AACCCTAAGATTGCT
chr8	79356035	79356036	chr8:79356036:T:C	rs6994136	T	C	T	Sox1_MA0870.1	17	0	+	0	0	.
chr8	79384068	79384069	chr8:79384069:G:T	rs56808068	G	T	G	Sox1_MA0870.1	12	1	+	6.799429704456196	-0.10932507485902454	AACATTGCCATTGCT
chr8	79636589	79636590	chr8:79636590:A:G	rs17452334	A	G	A	Sox1_MA0870.1	13	1	-	4.27197347444021	2.094318176989215	ATCAATTGCATAGTA
chr8	79699257	79699258	chr8:79699258:T:C	rs2440631	T	C	C	Sox1_MA0870.1	26	0	-	0	0	.
chr8	79822225	79822226	chr8:79822226:A:G	rs72684769	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	79841768	79841769	chr8:79841769:A:G	rs2467784	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr8	79841785	79841786	chr8:79841786:C:T	rs2467785	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr8	80083741	80083742	chr8:80083742:C:A	rs62516075	C	A	C	Sox1_MA0870.1	31	0	+	0	0	.
chr8	80782309	80782310	chr8:80782310:C:G	rs34754555	C	G	C	Sox1_MA0870.1	0	1	-	4.856556412280791	4.962382206532563	GACAATTACATTTGT
chr8	80975570	80975571	chr8:80975571:C:T	rs16908229	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	80975575	80975576	chr8:80975576:A:G	rs372471457	A	G	A	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	81028300	81028301	chr8:81028301:C:T	rs12676654	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	81079113	81079114	chr8:81079114:T:C	rs4515498	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr8	81133026	81133027	chr8:81133027:A:C	rs10088396	A	C	C	Sox1_MA0870.1	7	1	+	4.46918651975292	4.039425692216879	GTAAATAACATTGTG
chr8	81187268	81187269	chr8:81187269:T:C	rs115293527	T	C	T	Sox1_MA0870.1	11	1	+	7.743500397409027	2.788105411598693	GGCAATAGCAGTGTA
chr8	81193017	81193018	chr8:81193018:G:A	rs1834711	G	A	A	Sox1_MA0870.1	0	1	-	3.9128282019111396	3.2104514447636583	CACAATAGCACTGGG
chr8	81253317	81253318	chr8:81253318:A:G	rs75985855	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr8	81273047	81273048	chr8:81273048:A:G	rs111944243	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr8	81573891	81573892	chr8:81573892:G:A	rs4520121	G	A	g	Sox1_MA0870.1	2	1	-	5.268225093765407	-1.6405296855498137	GACGATATGATTGTT
chr8	81745497	81745498	chr8:81745498:A:G	rs148698659	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr8	81868858	81868859	chr8:81868859:T:C	rs74377651	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr8	81913278	81913279	chr8:81913279:C:A	rs4610705	C	A	C	Sox1_MA0870.1	23	0	-	0	0	.
chr8	81913320	81913321	chr8:81913321:T:G	rs765755	T	G	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr8	82020645	82020646	chr8:82020646:T:C	rs10091992	T	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	82418371	82418372	chr8:82418372:C:T	rs717498	C	T	c	Sox1_MA0870.1	33	0	-	0	0	.
chr8	82763251	82763252	chr8:82763252:T:A	rs7011681	T	A	T	Sox1_MA0870.1	9	1	-	4.99268622817402	-1.9160685511412	AAAAATTCCAGTGCT
chr8	82839021	82839022	chr8:82839022:A:G	rs67048258	A	G	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr8	83130205	83130206	chr8:83130206:A:G	rs1193103700	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr8	83679823	83679824	chr8:83679824:A:G	rs7834347	A	G	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	83775662	83775663	chr8:83775663:C:T	rs77781759	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr8	84626453	84626454	chr8:84626454:A:T	rs1488710	A	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	84949007	84949008	chr8:84949008:G:C	rs9693371	G	C	c	Sox1_MA0870.1	31	0	-	0	0	.
chr8	84949054	84949055	chr8:84949055:A:T	rs12542468	A	T	a	Sox1_MA0870.1	-16	0	-	0	0	.
chr8	85049300	85049301	chr8:85049301:G:A	rs368824801	G	A	g	Sox1_MA0870.1	31	0	-	0	0	.
chr8	85638246	85638247	chr8:85638247:A:G	rs7826539	A	G	A	Sox1_MA0870.1	0	1	+	5.874420265442952	4.5322971226362	AACAATTACGGTGTG
chr8	86089973	86089974	chr8:86089974:G:A	rs143059931	G	A	G	Sox1_MA0870.1	32	0	+	0	0	.
chr8	86343357	86343358	chr8:86343358:T:C	rs6988004	T	C	C	Sox1_MA0870.1	34	0	+	0	0	.
chr8	86748136	86748137	chr8:86748137:C:G	rs4961215	C	G	C	Sox1_MA0870.1	15	0	-	0	0	.
chr8	86765559	86765560	chr8:86765560:C:A	rs12549955	C	A	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	87998613	87998614	chr8:87998614:G:A	rs114857283	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr8	88799494	88799495	chr8:88799495:T:C	rs1498529	T	C	T	Sox1_MA0870.1	9	1	+	3.05439447425465	3.05439447425465	CACAATTGCTTTGGC
chr8	89001887	89001888	chr8:89001888:A:G	rs2464701	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr8	89043705	89043706	chr8:89043706:A:G	rs74382089	A	G	A	Sox1_MA0870.1	22	0	-	0	0	.
chr8	89184766	89184767	chr8:89184767:A:T	rs139948923	A	T	A	Sox1_MA0870.1	17	0	+	0	0	.
chr8	89721042	89721043	chr8:89721043:T:C	rs35489404	T	C	T	Sox1_MA0870.1	28	0	-	0	0	.
chr8	89778754	89778755	chr8:89778755:G:A	rs76938743	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr8	89999957	89999958	chr8:89999958:T:C	rs7822272	T	C	C	Sox1_MA0870.1	11	1	+	4.884486366942959	-0.07090861886737632	AAGAATAACAGTGCC
chr8	91145110	91145111	chr8:91145111:C:T	rs4374950	C	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr8	91304816	91304817	chr8:91304817:T:C	rs79907341	T	C	T	Sox1_MA0870.1	22	0	-	0	0	.
chr8	91953155	91953156	chr8:91953156:G:T	rs889540429	G	T	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	91975524	91975525	chr8:91975525:T:C	rs2920464	T	C	T	Sox1_MA0870.1	31	0	-	0	0	.
chr8	92479064	92479065	chr8:92479065:A:C	rs4734231	A	C	A	Sox1_MA0870.1	1	1	+	10.122700162958107	6.353559778113607	AACACTAGCATTGAA
chr8	93020514	93020515	chr8:93020515:G:T	rs2339774	G	T	T	Sox1_MA0870.1	12	1	+	6.986403308695882	0.07764852938066225	AACCCTGCCATTGTG
chr8	93127819	93127820	chr8:93127820:T:A	rs10108455	T	A	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	93903182	93903183	chr8:93903183:A:G	rs4585714	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	93915979	93915980	chr8:93915980:A:C	rs4236818	A	C	C	Sox1_MA0870.1	1	1	+	5.453785020342611	1.684644635498112	GACAATACCAATGCC
chr8	93986968	93986969	chr8:93986969:T:C	rs4579497	T	C	t	Sox1_MA0870.1	19	0	-	0	0	.
chr8	94155789	94155790	chr8:94155790:G:A	rs7840435	G	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr8	94200244	94200245	chr8:94200245:G:C	rs755637547	G	C	G	Sox1_MA0870.1	32	0	-	0	0	.
chr8	94227497	94227498	chr8:94227498:G:T	rs2448908	G	T	T	Sox1_MA0870.1	27	0	-	0	0	.
chr8	94227544	94227545	chr8:94227545:C:T	rs2607063	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	94782962	94782963	chr8:94782963:G:A	rs11998371	G	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr8	95069711	95069712	chr8:95069712:A:G	rs2002243	A	G	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	95476960	95476961	chr8:95476961:A:G	rs2133947	A	G	G	Sox1_MA0870.1	6	1	+	4.5926012091441075	3.05399451600339	GGCAAAACCAGTGTT
chr8	95520396	95520397	chr8:95520397:T:G	rs1500906	T	G	G	Sox1_MA0870.1	-5	0	-	0	0	.
chr8	95893043	95893044	chr8:95893044:A:G	rs74720900	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr8	96104250	96104251	chr8:96104251:T:C	rs80264598	T	C	T	Sox1_MA0870.1	10	1	+	9.148217821347895	2.339520737211562	CATAATACCATTGTT
chr8	96143985	96143986	chr8:96143986:T:A	rs75587676	T	A	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	96246490	96246491	chr8:96246491:C:T	rs1878638	C	T	T	Sox1_MA0870.1	4	1	+	7.884414347099401	3.0636490275544275	AACACTTACATTCTT
chr8	96334761	96334762	chr8:96334762:T:A	rs34646355	T	A	T	Sox1_MA0870.1	4	1	+	3.9461259360482828	10.723704190218472	AACATAGTCATTGTT
chr8	96345518	96345519	chr8:96345519:T:G	chr8:96345519:T:G	T	G	T	Sox1_MA0870.1	17	0	+	0	0	.
chr8	96523205	96523206	chr8:96523206:C:T	rs28437004	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr8	96523236	96523237	chr8:96523237:T:C	rs13259047	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr8	96570836	96570837	chr8:96570837:T:A	rs724236	T	A	A	Sox1_MA0870.1	6	1	+	4.749177934650029	5.7222266503643295	GACACTTTTATTGCA
chr8	96617677	96617678	chr8:96617678:G:A	rs10955078	G	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	97119530	97119531	chr8:97119531:T:G	rs67964310	T	G	G	Sox1_MA0870.1	7	1	+	8.91678485677003	8.961396409057937	AACAAAATCATTGAT
chr8	97598100	97598101	chr8:97598101:C:A	rs185778610	C	A	c	Sox1_MA0870.1	8	1	+	5.795145984128384	-0.09802367018982994	AAAAAAAACATTGTT
chr8	97813020	97813021	chr8:97813021:C:T	rs75581115	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	97940597	97940598	chr8:97940598:C:T	rs2512024	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr8	97995504	97995505	chr8:97995505:G:A	rs16896517	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr8	98189489	98189490	chr8:98189490:C:T	rs16896768	C	T	T	Sox1_MA0870.1	2	1	+	4.150681538940235	-2.7580732403749857	CACCATATCACTGTT
chr8	98358710	98358711	chr8:98358711:G:C	rs116914733	G	C	A	Sox1_MA0870.1	29	0	-	0	0	.
chr8	98457011	98457012	chr8:98457012:A:G	chr8:98457012:A:G	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr8	98457042	98457043	chr8:98457043:G:C	rs1490299141	G	C	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	99024814	99024815	chr8:99024815:C:A	rs78791374	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr8	99807547	99807548	chr8:99807548:C:A	rs1979115	C	A	A	Sox1_MA0870.1	15	0	-	0	0	.
chr8	99869693	99869694	chr8:99869694:C:G	rs138091634	C	G	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	99887271	99887272	chr8:99887272:T:C	rs545978155	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr8	100025362	100025363	chr8:100025363:T:C	rs3133685	T	C	T	Sox1_MA0870.1	20	0	-	0	0	.
chr8	100038795	100038796	chr8:100038796:C:A	rs930965	C	A	A	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	100182297	100182298	chr8:100182298:C:T	rs11780842	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr8	100324645	100324646	chr8:100324646:C:T	rs2439456	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr8	100333317	100333318	chr8:100333318:T:G	rs6468710	T	G	t	Sox1_MA0870.1	29	0	+	0	0	.
chr8	100472513	100472514	chr8:100472514:T:C	rs75604920	T	C	T	Sox1_MA0870.1	10	1	+	9.74192132717052	2.9332242430341857	CACAAAAACATTGTG
chr8	100563363	100563364	chr8:100563364:T:C	rs138148767	T	C	T	Sox1_MA0870.1	5	1	+	4.884486366942959	-2.018678391704802	AAAAATAACAGTGCC
chr8	100663643	100663644	chr8:100663644:G:A	rs2935545	G	A	A	Sox1_MA0870.1	20	0	-	0	0	.
chr8	100777033	100777034	chr8:100777034:C:T	rs1874631	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr8	100795922	100795923	chr8:100795923:A:C	rs10464815	A	C	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr8	100827210	100827211	chr8:100827211:G:A	rs1353348528	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr8	100925145	100925146	chr8:100925146:A:G	rs3105460	A	G	a	Sox1_MA0870.1	25	0	-	0	0	.
chr8	101223008	101223009	chr8:101223009:A:G	rs73698960	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr8	101232125	101232126	chr8:101232126:G:A	rs60426890	G	A	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	101602205	101602206	chr8:101602206:A:G	rs7821380	A	G	A	Sox1_MA0870.1	6	1	+	5.088485985062883	3.549879291922165	TAAAATATCATTGAT
chr8	101882237	101882238	chr8:101882238:C:G	rs543897	C	G	G	Sox1_MA0870.1	12	1	-	4.333756571704372	-2.574998207610849	GACACAAACATTGAG
chr8	101884928	101884929	chr8:101884929:T:C	rs149860778	T	C	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr8	101952521	101952522	chr8:101952522:A:C	rs16868791	A	C	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr8	102128821	102128822	chr8:102128822:A:T	rs7822831	A	T	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	102238214	102238215	chr8:102238215:C:G	rs28999671	C	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr8	102272890	102272891	chr8:102272891:A:T	rs75848936	A	T	T	Sox1_MA0870.1	14	1	-	4.133412791177657	2.2323994663925086	TCCAATTACTTTGTT
chr8	102486088	102486089	chr8:102486089:T:C	rs7002717	T	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr8	102550522	102550523	chr8:102550523:T:A	rs11990360	T	A	T	Sox1_MA0870.1	8	1	+	4.638400330074715	2.926840222393783	CCCACTACTATTGTC
chr8	102584201	102584202	chr8:102584202:G:A	rs545477396	G	A	G	Sox1_MA0870.1	2	1	-	6.300694401722797	-0.6080603775924228	CTCAATAACATTTTT
chr8	102590501	102590502	chr8:102590502:G:T	rs753754099	G	T	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	102653667	102653668	chr8:102653668:T:C	rs190680917	T	C	T	Sox1_MA0870.1	10	1	+	7.309602620115368	0.5009055359790349	AACAATATAATTGCA
chr8	102900089	102900090	chr8:102900090:A:G	rs138031917	A	G	A	Sox1_MA0870.1	2	1	-	5.21983836737418	12.1285931466894	TATAATTTCAGTGTT
chr8	102900108	102900109	chr8:102900109:G:A	rs78430053	G	A	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	102919289	102919290	chr8:102919290:C:T	rs79582339	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	102919290	102919291	chr8:102919291:C:A	rs79077248	C	A	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr8	103020173	103020174	chr8:103020174:C:T	rs56937660	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	103071557	103071558	chr8:103071558:G:T	rs16870033	G	T	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	103111077	103111078	chr8:103111078:G:A	rs33999374	G	A	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	103164977	103164978	chr8:103164978:C:T	rs1494282	C	T	C	Sox1_MA0870.1	0	1	+	3.978617987621647	3.276241230474167	CACACTAACTTTGGT
chr8	103636870	103636871	chr8:103636871:T:C	rs76666704	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	103760500	103760501	chr8:103760501:G:C	rs17235420	G	C	G	Sox1_MA0870.1	21	0	+	0	0	.
chr8	103996528	103996529	chr8:103996529:T:C	rs7830448	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr8	104064768	104064769	chr8:104064769:C:A	rs72683185	C	A	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	104064784	104064785	chr8:104064785:A:G	rs11786807	A	G	G	Sox1_MA0870.1	6	1	+	6.5148598579441375	4.97625316480342	AAAACTATCATTGTA
chr8	104184204	104184205	chr8:104184205:A:G	rs6651195	A	G	A	Sox1_MA0870.1	11	1	-	4.777311236343316	-0.17808374946701788	TGTAATAACATTGTT
chr8	104569055	104569056	chr8:104569056:A:G	rs10955352	A	G	G	Sox1_MA0870.1	24	0	-	0	0	.
chr8	104575363	104575364	chr8:104575364:C:T	rs117723748	C	T	C	Sox1_MA0870.1	16	0	-	0	0	.
chr8	104678937	104678938	chr8:104678938:A:G	rs193024976	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr8	104887736	104887737	chr8:104887737:G:A	rs547910280	G	A	G	Sox1_MA0870.1	34	0	-	0	0	.
chr8	104902010	104902011	chr8:104902011:T:C	rs716429	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	104992541	104992542	chr8:104992542:A:G	rs62509490	A	G	A	Sox1_MA0870.1	16	0	-	0	0	.
chr8	105076950	105076951	chr8:105076951:A:T	rs3110293	A	T	A	Sox1_MA0870.1	26	0	-	0	0	.
chr8	105076973	105076974	chr8:105076974:T:C	rs2956785	T	C	T	Sox1_MA0870.1	3	1	-	8.52760650321896	1.6270168360217356	AGCACTTTCATTGTG
chr8	105408807	105408808	chr8:105408808:A:G	rs1383590	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr8	105464789	105464790	chr8:105464790:G:T	rs33916644	G	T	G	Sox1_MA0870.1	17	0	-	0	0	.
chr8	105848438	105848439	chr8:105848439:A:T	rs10112683	A	T	A	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	106012276	106012277	chr8:106012277:C:T	rs1496182	C	T	C	Sox1_MA0870.1	12	1	-	4.554735466701647	-2.3540193126135738	AGCAATATCATAGTG
chr8	106208782	106208783	chr8:106208783:A:T	rs111406152	A	T	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	106331032	106331033	chr8:106331033:A:G	rs7834655	A	G	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	106624659	106624660	chr8:106624660:A:G	rs3134134	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	106763197	106763198	chr8:106763198:T:A	rs6991117	T	A	t	Sox1_MA0870.1	0	1	+	9.006778416881488	10.945452522583949	TACATTAACATTGTT
chr8	106903787	106903788	chr8:106903788:C:T	rs554547637	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	106973386	106973387	chr8:106973387:C:G	rs117327309	C	G	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	107064943	107064944	chr8:107064944:G:A	rs3019932	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr8	107365511	107365512	chr8:107365512:T:C	rs1283660	T	C	T	Sox1_MA0870.1	26	0	-	0	0	.
chr8	107374362	107374363	chr8:107374363:A:C	rs892247	A	C	A	Sox1_MA0870.1	9	1	+	3.223613401932154	-3.685141377383064	CACAATGGCAGTTCT
chr8	107483377	107483378	chr8:107483378:T:A	rs16876348	T	A	A	Sox1_MA0870.1	17	0	-	0	0	.
chr8	107497402	107497403	chr8:107497403:G:T	rs148142982	G	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr8	107520158	107520159	chr8:107520159:C:G	rs146593322	C	G	C	Sox1_MA0870.1	31	0	-	0	0	.
chr8	107741289	107741290	chr8:107741290:G:A	rs1003155322	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr8	107867976	107867977	chr8:107867977:A:G	rs937294	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	107888889	107888890	chr8:107888890:T:C	rs6987451	T	C	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	108262841	108262842	chr8:108262842:G:A	rs60862542	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr8	108942645	108942646	chr8:108942646:C:T	rs116911578	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr8	109252033	109252034	chr8:109252034:T:G	chr8:109252034:T:G	T	G	T	Sox1_MA0870.1	13	1	-	12.222061834910836	13.389932564049	AACAATACCATTGAG
chr8	109448258	109448259	chr8:109448259:G:T	rs1673407	G	T	T	Sox1_MA0870.1	-1	0	-	0	0	.
chr8	109464545	109464546	chr8:109464546:C:A	rs181520404	C	A	C	Sox1_MA0870.1	17	0	-	0	0	.
chr8	109715521	109715522	chr8:109715522:C:A	rs3134344	C	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr8	110836031	110836032	chr8:110836032:A:G	rs62522391	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr8	110959065	110959066	chr8:110959066:C:A	rs4637866	C	A	C	Sox1_MA0870.1	15	0	+	0	0	.
chr8	111086641	111086642	chr8:111086642:A:T	chr8:111086642:A:T	A	T	A	Sox1_MA0870.1	9	1	+	5.23321506295366	-1.6755397163615617	AACAACAACAGTGAT
chr8	111532341	111532342	chr8:111532342:A:T	rs560340179	A	T	a	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	111611619	111611620	chr8:111611620:G:C	rs35171173	G	C	G	Sox1_MA0870.1	34	0	+	0	0	.
chr8	112195863	112195864	chr8:112195864:G:A	rs12114136	G	A	G	Sox1_MA0870.1	13	1	-	6.864736729645128	9.042392027096122	GACAATACCATTCCT
chr8	112768574	112768575	chr8:112768575:C:T	rs10955633	C	T	T	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	112888137	112888138	chr8:112888138:T:C	rs2125553	T	C	C	Sox1_MA0870.1	7	1	-	4.76767772924954	4.370699401453032	CTCAAGGACATTGTT
chr8	114298074	114298075	chr8:114298075:G:A	rs6984224	G	A	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr8	115026762	115026763	chr8:115026763:A:C	rs1436719	A	C	A	Sox1_MA0870.1	7	1	-	4.7914642850149685	4.836075837302875	TACAATATCTTTGGT
chr8	115336174	115336175	chr8:115336175:A:G	rs7017904	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr8	115405965	115405966	chr8:115405966:G:A	rs231149	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	115418535	115418536	chr8:115418536:T:C	rs77108422	T	C	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	115420447	115420448	chr8:115420448:A:T	rs16887452	A	T	A	Sox1_MA0870.1	30	0	-	0	0	.
chr8	115450461	115450462	chr8:115450462:G:A	rs115729284	G	A	G	Sox1_MA0870.1	14	1	-	5.872456403685732	7.383465808167136	CACAAAATCATTGGC
chr8	115607128	115607129	chr8:115607129:C:T	rs997806	C	T	C	Sox1_MA0870.1	15	0	-	0	0	.
chr8	116353736	116353737	chr8:116353737:C:T	rs117156100	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	116353749	116353750	chr8:116353750:G:A	rs9650062	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	116903775	116903776	chr8:116903776:G:A	rs720131	G	A	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr8	117069777	117069778	chr8:117069778:A:G	rs35875446	A	G	G	Sox1_MA0870.1	6	1	+	5.560042513187497	4.0214358200467775	CACAGTAGCAGTGTC
chr8	117441664	117441665	chr8:117441665:G:A	rs2318169	G	A	G	Sox1_MA0870.1	25	0	-	0	0	.
chr8	117441675	117441676	chr8:117441676:C:T	rs2318170	C	T	C	Sox1_MA0870.1	14	1	-	5.937889896555518	5.762558659488474	AAAAATTACATTGCG
chr8	117471394	117471395	chr8:117471395:T:G	rs17740330	T	G	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	117707055	117707056	chr8:117707056:A:G	chr8:117707056:A:G	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	117707101	117707102	chr8:117707102:A:G	rs734650	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr8	117762757	117762758	chr8:117762758:T:C	rs720896	T	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr8	117794066	117794067	chr8:117794067:G:A	rs10087589	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr8	117926854	117926855	chr8:117926855:G:A	rs7812722	G	A	G	Sox1_MA0870.1	13	1	-	6.16871612758524	8.346371425036235	GACACTGGCAGTGCA
chr8	118103818	118103819	chr8:118103819:T:C	rs12541473	T	C	T	Sox1_MA0870.1	31	0	+	0	0	.
chr8	118517907	118517908	chr8:118517908:C:T	rs74499227	C	T	C	Sox1_MA0870.1	34	0	-	0	0	.
chr8	118521577	118521578	chr8:118521578:C:A	rs9297588	C	A	A	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	118650336	118650337	chr8:118650337:G:T	rs1543223	G	T	G	Sox1_MA0870.1	2	1	-	3.8986039739954714	-3.0101508053197485	GCCATTGGCATTGTT
chr8	119355361	119355362	chr8:119355362:A:G	rs1903512	A	G	A	Sox1_MA0870.1	3	1	+	9.81175213856093	2.911162471363704	ACCAATAACAGTGTA
chr8	119426168	119426169	chr8:119426169:C:T	rs60859300	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr8	119603082	119603083	chr8:119603083:C:T	rs1374100	C	T	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr8	119873859	119873860	chr8:119873860:G:A	rs147235105	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	119908739	119908740	chr8:119908740:A:G	rs7017583	A	G	A	Sox1_MA0870.1	9	1	-	4.886055805924081	4.886055805924081	CTCAATTTCTTTGTT
chr8	120030817	120030818	chr8:120030818:C:G	rs12542032	C	G	C	Sox1_MA0870.1	22	0	+	0	0	.
chr8	120161641	120161642	chr8:120161642:C:T	chr8:120161642:C:T	C	T	C	Sox1_MA0870.1	24	0	+	0	0	.
chr8	120175659	120175660	chr8:120175660:T:C	rs2198755	T	C	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr8	120379982	120379983	chr8:120379983:A:T	rs6469923	A	T	A	Sox1_MA0870.1	9	1	+	5.592012715185205	-1.3167420641300154	AACACCTGCATTGTA
chr8	120566850	120566851	chr8:120566851:A:G	rs7826902	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	120588757	120588758	chr8:120588758:G:A	rs13265960	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr8	120733384	120733385	chr8:120733385:A:G	rs138227875	A	G	A	Sox1_MA0870.1	14	1	-	4.229145503216248	2.7181360987348433	CACAAAACCAATGTT
chr8	120866450	120866451	chr8:120866451:C:T	rs6651222	C	T	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr8	120987837	120987838	chr8:120987838:C:T	rs919849	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr8	121017064	121017065	chr8:121017065:C:T	rs16894535	C	T	C	Sox1_MA0870.1	10	1	-	4.724624605466917	0.1570524498941439	AACCATAAGAGTGTA
chr8	121017075	121017076	chr8:121017076:G:A	rs73333065	G	A	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr8	121119755	121119756	chr8:121119756:A:G	rs6997963	A	G	G	Sox1_MA0870.1	10	1	-	5.986364930515055	-0.8223321536212792	AGCAAAATCATTGCT
chr8	121135842	121135843	chr8:121135843:T:C	rs77403953	T	C	T	Sox1_MA0870.1	-19	0	-	0	0	.
chr8	121324702	121324703	chr8:121324703:A:G	rs56023279	A	G	G	Sox1_MA0870.1	33	0	+	0	0	.
chr8	121324703	121324704	chr8:121324704:A:G	rs56019878	A	G	G	Sox1_MA0870.1	34	0	+	0	0	.
chr8	121450334	121450335	chr8:121450335:G:A	rs73332345	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr8	121471548	121471549	chr8:121471549:A:C	rs78337060	A	C	A	Sox1_MA0870.1	0	1	-	3.5898036800426625	4.18635464293837	TACACTCCCAGTGCT
chr8	121546929	121546930	chr8:121546930:C:T	rs56285244	C	T	C	Sox1_MA0870.1	7	1	-	3.555104696796601	3.952083024593108	CCCACTAGCAATGTT
chr8	121558172	121558173	chr8:121558173:T:A	rs7016865	T	A	T	Sox1_MA0870.1	23	0	-	0	0	.
chr8	121680339	121680340	chr8:121680340:G:A	rs10113295	G	A	A	Sox1_MA0870.1	18	0	+	0	0	.
chr8	121811418	121811419	chr8:121811419:T:G	rs1371719	T	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	121839117	121839118	chr8:121839118:T:G	rs4582571	T	G	G	Sox1_MA0870.1	6	1	-	4.492213723845762	-0.8969852789874407	CACCATAACATTTTT
chr8	121866310	121866311	chr8:121866311:C:T	rs16896323	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	122084684	122084685	chr8:122084685:C:T	rs6981337	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr8	122241116	122241117	chr8:122241117:A:G	rs2105781	A	G	G	Sox1_MA0870.1	10	1	-	4.129087808037361	-2.679609276098972	CACAAAACCATTTTT
chr8	122334806	122334807	chr8:122334807:G:C	rs34811381	G	C	G	Sox1_MA0870.1	31	0	-	0	0	.
chr8	122623310	122623311	chr8:122623311:G:A	rs554645789	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	122623338	122623339	chr8:122623339:T:G	rs56282802	T	G	T	Sox1_MA0870.1	10	1	+	5.1454147222813855	2.904289793717825	AATAATGTCATTGCC
chr8	122746700	122746701	chr8:122746701:C:T	rs6981534	C	T	T	Sox1_MA0870.1	15	0	-	0	0	.
chr8	122876277	122876278	chr8:122876278:G:A	rs73333647	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr8	122994720	122994721	chr8:122994721:C:T	rs149810257	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr8	123072233	123072234	chr8:123072234:C:T	chr8:123072234:C:T	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr8	123085788	123085789	chr8:123085789:C:T	rs7836014	C	T	C	Sox1_MA0870.1	8	1	+	5.747110260768011	1.565500714130728	TAGAATTCCATTGTG
chr8	123157227	123157228	chr8:123157228:T:C	rs182134026	T	C	T	Sox1_MA0870.1	11	1	+	6.355019249003805	1.3996242631934699	AACAAAATTATTGTG
chr8	123157229	123157230	chr8:123157230:T:G	rs528472445	T	G	T	Sox1_MA0870.1	13	1	+	6.355019249003805	2.7124715223667315	AACAAAATTATTGTG
chr8	123167694	123167695	chr8:123167695:T:C	rs7011341	T	C	T	Sox1_MA0870.1	6	1	+	9.620521304069907	5.204371016951006	CACAATTGGATTGTG
chr8	123173729	123173730	chr8:123173730:T:C	rs6988636	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr8	123179151	123179152	chr8:123179152:T:A	rs112246173	T	A	T	Sox1_MA0870.1	17	0	-	0	0	.
chr8	123272131	123272132	chr8:123272132:T:C	rs7014857	T	C	T	Sox1_MA0870.1	10	1	+	4.2961036279593	-2.512593456177033	AACATTTCCATTGAA
chr8	123466488	123466489	chr8:123466489:A:C	rs528338809	A	C	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	123578267	123578268	chr8:123578268:T:C	rs72711207	T	C	T	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	123618111	123618112	chr8:123618112:T:C	rs7821932	T	C	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	124294868	124294869	chr8:124294869:C:A	rs111699176	C	A	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr8	124521390	124521391	chr8:124521391:G:A	rs72713090	G	A	G	Sox1_MA0870.1	-5	0	+	0	0	.
chr8	124610163	124610164	chr8:124610164:T:C	rs12114612	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	124649235	124649236	chr8:124649236:G:A	rs28703083	G	A	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr8	124701070	124701071	chr8:124701071:A:C	rs79330310	A	C	A	Sox1_MA0870.1	4	1	+	5.574433760570409	3.6176208259451927	CACAAAAAAATTGTT
chr8	124717961	124717962	chr8:124717962:G:A	rs4870920	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	124888850	124888851	chr8:124888851:T:C	rs28806495	T	C	T	Sox1_MA0870.1	1	1	-	4.653024394662215	0.5547337392690745	CACAATAGAATTGGA
chr8	125075567	125075568	chr8:125075568:G:A	rs74766652	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	125075571	125075572	chr8:125075572:C:A	rs74638659	C	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr8	125131076	125131077	chr8:125131077:A:G	rs2891633	A	G	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr8	125255387	125255388	chr8:125255388:T:G	rs7008482	T	G	G	Sox1_MA0870.1	17	0	+	0	0	.
chr8	125262912	125262913	chr8:125262913:T:C	rs74660548	T	C	T	Sox1_MA0870.1	5	1	+	3.950714482614535	-2.9524502760332245	GACCATTTCAGTGCC
chr8	125262936	125262937	chr8:125262937:T:C	rs56920013	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr8	125289631	125289632	chr8:125289632:T:C	rs6470348	T	C	C	Sox1_MA0870.1	26	0	+	0	0	.
chr8	125294674	125294675	chr8:125294675:G:A	rs10101690	G	A	A	Sox1_MA0870.1	23	0	+	0	0	.
chr8	125479490	125479491	chr8:125479491:G:T	rs2954031	G	T	G	Sox1_MA0870.1	34	0	-	0	0	.
chr8	125529431	125529432	chr8:125529432:T:C	rs1809166	T	C	C	Sox1_MA0870.1	0	1	-	5.717142379296883	4.375019236490129	AACACTTTCATTTTG
chr8	125636239	125636240	chr8:125636240:A:G	rs60074719	A	G	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr8	125676794	125676795	chr8:125676795:T:C	rs11997786	T	C	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr8	125760318	125760319	chr8:125760319:C:T	rs10956258	C	T	C	Sox1_MA0870.1	21	0	-	0	0	.
chr8	125953569	125953570	chr8:125953570:T:C	rs28625492	T	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr8	125972419	125972420	chr8:125972420:T:C	rs12682025	T	C	T	Sox1_MA0870.1	33	0	-	0	0	.
chr8	126398326	126398327	chr8:126398327:G:T	rs10094763	G	T	T	Sox1_MA0870.1	14	1	-	3.07974520514791	2.689741284844167	GACATTTGCATTGGC
chr8	126621210	126621211	chr8:126621211:T:C	rs139460374	T	C	T	Sox1_MA0870.1	11	1	+	4.8984163796710485	-0.05697860613928596	AACATTGCCATTGCA
chr8	126668285	126668286	chr8:126668286:A:C	rs7828002	A	C	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	126668328	126668329	chr8:126668329:A:T	rs16901632	A	T	A	Sox1_MA0870.1	23	0	-	0	0	.
chr8	126904124	126904125	chr8:126904125:A:G	rs1516937	A	G	A	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	126926970	126926971	chr8:126926971:T:C	rs10097524	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr8	126990556	126990557	chr8:126990557:G:C	rs12678076	G	C	G	Sox1_MA0870.1	17	0	+	0	0	.
chr8	127100719	127100720	chr8:127100720:A:G	rs559605202	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr8	127137271	127137272	chr8:127137272:C:T	rs60148388	C	T	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	127352952	127352953	chr8:127352953:A:C	rs11774777	A	C	C	Sox1_MA0870.1	28	0	+	0	0	.
chr8	127352955	127352956	chr8:127352956:G:A	rs11781679	G	A	A	Sox1_MA0870.1	31	0	+	0	0	.
chr8	127490337	127490338	chr8:127490338:C:T	rs7820229	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	127564089	127564090	chr8:127564090:G:C	rs10956374	G	C	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	127564670	127564671	chr8:127564671:C:T	rs10217106	C	T	C	Sox1_MA0870.1	26	0	-	0	0	.
chr8	127584168	127584169	chr8:127584169:G:C	rs13282785	G	C	C	Sox1_MA0870.1	8	1	-	9.047962759298468	5.277459766398129	TGCAATAGCAGTGTT
chr8	127776738	127776739	chr8:127776739:A:G	rs4395860	A	G	G	Sox1_MA0870.1	6	1	+	3.7978815401551254	2.2592748470144075	CACTGTAGCATTGTT
chr8	127784967	127784968	chr8:127784968:T:G	rs6470575	T	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	127892993	127892994	chr8:127892994:T:C	chr8:127892994:T:C	T	C	T	Sox1_MA0870.1	24	0	-	0	0	.
chr8	127981474	127981475	chr8:127981475:C:T	rs115311148	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr8	128007285	128007286	chr8:128007286:C:A	rs73355697	C	A	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr8	128113928	128113929	chr8:128113929:C:T	rs2019940	C	T	T	Sox1_MA0870.1	18	0	-	0	0	.
chr8	128184799	128184800	chr8:128184800:G:T	rs80272901	G	T	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr8	128190383	128190384	chr8:128190384:G:A	rs117412945	G	A	G	Sox1_MA0870.1	12	1	+	8.439602032319504	1.5308472530042834	TACAAGATCATTGTT
chr8	128318021	128318022	chr8:128318022:C:T	rs4470994	C	T	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr8	128376640	128376641	chr8:128376641:A:T	rs112287406	A	T	A	Sox1_MA0870.1	27	0	+	0	0	.
chr8	128557124	128557125	chr8:128557125:G:A	rs1561924	G	A	A	Sox1_MA0870.1	6	1	+	7.175040047701863	8.71364674084258	ATCACTGCCATTGAT
chr8	128754564	128754565	chr8:128754565:A:G	rs6470656	A	G	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr8	128871912	128871913	chr8:128871913:T:C	rs13276570	T	C	T	Sox1_MA0870.1	9	1	-	4.763386057479957	-2.145368721835264	AGCAATATCATTTTC
chr8	128939522	128939523	chr8:128939523:C:T	rs7815993	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr8	129241196	129241197	chr8:129241197:G:C	rs7817451	G	C	C	Sox1_MA0870.1	29	0	+	0	0	.
chr8	130008551	130008552	chr8:130008552:C:T	rs72720360	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr8	130029762	130029763	chr8:130029763:C:T	rs10087217	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr8	130194968	130194969	chr8:130194969:C:T	rs80153538	C	T	C	Sox1_MA0870.1	8	1	+	5.123467558691491	0.941858012054209	TACAATAACAGTATC
chr8	130247108	130247109	chr8:130247109:G:C	rs143516443	G	C	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr8	130277804	130277805	chr8:130277805:T:G	rs191163693	T	G	T	Sox1_MA0870.1	4	1	-	4.879958495532367	2.92314556090715	CACAATATGAGTGGC
chr8	130421177	130421178	chr8:130421178:G:A	rs77783234	G	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr8	130478479	130478480	chr8:130478480:T:C	rs7004992	T	C	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	130478483	130478484	chr8:130478484:T:C	rs12543635	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr8	130503902	130503903	chr8:130503903:G:C	rs114695550	G	C	G	Sox1_MA0870.1	20	0	-	0	0	.
chr8	130675757	130675758	chr8:130675758:A:G	rs16904338	A	G	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr8	131446022	131446023	chr8:131446023:A:G	rs1430314	A	G	A	Sox1_MA0870.1	14	1	-	4.557027149432996	3.046017744951592	TACAATTACGTTGAT
chr8	131814715	131814716	chr8:131814716:G:A	rs62519243	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr8	132038652	132038653	chr8:132038653:A:G	rs871959	A	G	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	132453911	132453912	chr8:132453912:C:T	rs907878917	C	T	C	Sox1_MA0870.1	25	0	-	0	0	.
chr8	132573102	132573103	chr8:132573103:T:C	rs143343082	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr8	132908075	132908076	chr8:132908076:A:G	rs866468	A	G	G	Sox1_MA0870.1	16	0	+	0	0	.
chr8	132946258	132946259	chr8:132946259:A:C	rs77027029	A	C	A	Sox1_MA0870.1	14	1	-	5.795145984128384	4.06946389641028	AACAAAAACATTCTT
chr8	133008966	133008967	chr8:133008967:T:G	rs17693908	T	G	T	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	133092930	133092931	chr8:133092931:C:T	rs73354628	C	T	C	Sox1_MA0870.1	20	0	+	0	0	.
chr8	133203267	133203268	chr8:133203268:C:T	rs145447010	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	133462349	133462350	chr8:133462350:G:A	rs2736870	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr8	133579537	133579538	chr8:133579538:T:C	rs73363005	T	C	T	Sox1_MA0870.1	7	1	+	5.6844501608908455	5.696279213439219	ATCAATATCACTGTC
chr8	133902827	133902828	chr8:133902828:T:G	rs13255744	T	G	T	Sox1_MA0870.1	6	1	+	4.925240860689878	4.359682883263461	TACACTTTCAGTGAA
chr8	133902838	133902839	chr8:133902839:G:T	rs6471169	G	T	G	Sox1_MA0870.1	17	0	+	0	0	.
chr8	133902845	133902846	chr8:133902846:T:C	rs7846118	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr8	133920326	133920327	chr8:133920327:C:T	rs3866719	C	T	T	Sox1_MA0870.1	14	1	+	7.312823075254974	8.823832479736378	CACACTGGGATTGTC
chr8	134010656	134010657	chr8:134010657:A:G	rs11990927	A	G	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	134010672	134010673	chr8:134010673:G:A	rs11998159	G	A	g	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	134078096	134078097	chr8:134078097:T:C	rs7842219	T	C	T	Sox1_MA0870.1	10	1	+	5.641568446160091	-1.167128637976243	ATCAAGAACATTGTA
chr8	134305898	134305899	chr8:134305899:C:T	rs1867950	C	T	C	Sox1_MA0870.1	26	0	+	0	0	.
chr8	134719334	134719335	chr8:134719335:G:A	rs9969668	G	A	g	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	134757645	134757646	chr8:134757646:A:G	rs67047054	A	G	a	Sox1_MA0870.1	13	1	-	10.295630233306271	8.117974935855276	CTCAATTCCATTGTC
chr8	134757669	134757670	chr8:134757670:G:A	rs111593990	G	A	g	Sox1_MA0870.1	-11	0	-	0	0	.
chr8	134921797	134921798	chr8:134921798:A:T	rs11786795	A	T	A	Sox1_MA0870.1	23	0	+	0	0	.
chr8	134928790	134928791	chr8:134928791:G:A	rs7014658	G	A	G	Sox1_MA0870.1	12	1	+	3.639479750833098	-3.269275028482122	ATCCATGCCAGTGTC
chr8	135036011	135036012	chr8:135036012:C:G	rs7829668	C	G	C	Sox1_MA0870.1	12	1	-	4.59838152051541	-2.31037325879981	TACAGTATCAGTGTG
chr8	135418090	135418091	chr8:135418091:C:A	rs716035	C	A	A	Sox1_MA0870.1	21	0	-	0	0	.
chr8	135418103	135418104	chr8:135418104:G:A	rs117970095	G	A	G	Sox1_MA0870.1	8	1	-	9.19802211521173	5.016412568574447	AACACTTTCATTGGC
chr8	135452566	135452567	chr8:135452567:T:A	rs59688381	T	A	T	Sox1_MA0870.1	7	1	+	5.169581752517857	5.611171632602272	CACAATATCTGTGTG
chr8	135516340	135516341	chr8:135516341:C:G	rs6992764	C	G	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr8	135901171	135901172	chr8:135901172:C:T	rs6999978	C	T	-	Sox1_MA0870.1	13	1	-	6.198679555087542	6.495701255135456	AATAATTACATTGGT
chr8	136026717	136026718	chr8:136026718:T:C	chr8:136026718:T:C	T	C	T	Sox1_MA0870.1	7	1	+	4.875636425291749	4.887465477840122	GTCACTTTCATTGAC
chr8	136040980	136040981	chr8:136040981:G:A	rs2317349	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr8	136049163	136049164	chr8:136049164:G:T	rs4909547	G	T	G	Sox1_MA0870.1	22	0	+	0	0	.
chr8	136143332	136143333	chr8:136143333:G:A	rs4909572	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr8	136525768	136525769	chr8:136525769:A:G	rs4909598	A	G	A	Sox1_MA0870.1	17	0	+	0	0	.
chr8	137010028	137010029	chr8:137010029:A:G	rs7357354	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr8	137150967	137150968	chr8:137150968:A:G	rs7009688	A	G	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	137514436	137514437	chr8:137514437:G:A	rs16907443	G	A	G	Sox1_MA0870.1	15	0	-	0	0	.
chr8	138196569	138196570	chr8:138196570:T:C	rs4909749	T	C	C	Sox1_MA0870.1	23	0	-	0	0	.
chr8	138268159	138268160	chr8:138268160:C:T	rs73439028	C	T	C	Sox1_MA0870.1	8	1	+	4.356876933399898	0.17526738676261544	CACACTGACCTTGTG
chr8	138699485	138699486	chr8:138699486:T:A	rs4545143	T	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr8	138738997	138738998	chr8:138738998:G:C	rs10090839	G	C	C	Sox1_MA0870.1	25	0	+	0	0	.
chr8	138784805	138784806	chr8:138784806:T:G	rs7460631	T	G	.	Sox1_MA0870.1	27	0	+	0	0	.
chr8	138830975	138830976	chr8:138830976:A:C	rs59176636	A	C	A	Sox1_MA0870.1	5	1	-	4.163043168591109	-2.7401215900566496	GACAATGAGGTTGTT
chr8	138834946	138834947	chr8:138834947:A:G	rs6996369	A	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr8	138834969	138834970	chr8:138834970:A:G	rs6996386	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr8	138860376	138860377	chr8:138860377:A:G	rs1574172	A	G	G	Sox1_MA0870.1	9	1	+	3.8268802531589063	-3.0818745261563145	CACCCTGACATTGCA
chr8	138896538	138896539	chr8:138896539:G:C	rs9644439	G	C	C	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	139096465	139096466	chr8:139096466:A:G	rs78193702	A	G	A	Sox1_MA0870.1	4	1	+	5.7532787273866095	-1.0242995267835782	GTCAATATCCTTGTT
chr8	139096478	139096479	chr8:139096479:T:C	rs79705081	T	C	c	Sox1_MA0870.1	17	0	+	0	0	.
chr8	139173960	139173961	chr8:139173961:G:C	rs7001924	G	C	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	139228362	139228363	chr8:139228363:G:A	rs916906652	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr8	139736773	139736774	chr8:139736774:A:C	rs7821038	A	C	A	Sox1_MA0870.1	-10	0	+	0	0	.
chr8	139831746	139831747	chr8:139831747:T:C	rs139935286	T	C	T	Sox1_MA0870.1	18	0	-	0	0	.
chr8	139831764	139831765	chr8:139831765:T:C	rs118093331	T	C	T	Sox1_MA0870.1	0	1	-	3.639544777024776	2.2974216342180216	AACACTTTCACTGCG
chr8	139908084	139908085	chr8:139908085:G:C	rs59461876	G	C	G	Sox1_MA0870.1	20	0	+	0	0	.
chr8	139959580	139959581	chr8:139959581:A:G	rs962355	A	G	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	140060393	140060394	chr8:140060394:T:A	rs146889587	T	A	T	Sox1_MA0870.1	1	1	-	5.4375458514236445	2.1602616042625047	CACAAGGCCATTGCT
chr8	140102728	140102729	chr8:140102729:G:A	rs59302559	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr8	140352725	140352726	chr8:140352726:C:G	rs60598280	C	G	G	Sox1_MA0870.1	10	1	-	5.436163982240523	0.8685918266677501	AACTCTAGCAGTGCT
chr8	140512769	140512770	chr8:140512770:C:T	chr8:140512770:C:T	C	T	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr8	140527779	140527780	chr8:140527780:G:A	rs927563987	G	A	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr8	140577304	140577305	chr8:140577305:C:T	rs9694342	C	T	T	Sox1_MA0870.1	-17	0	-	0	0	.
chr8	140791088	140791089	chr8:140791089:G:C	rs6985838	G	C	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	140999497	140999498	chr8:140999498:C:T	rs28636414	C	T	C	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	141015729	141015730	chr8:141015730:C:T	rs62523587	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr8	141239945	141239946	chr8:141239946:A:T	rs117625650	A	T	A	Sox1_MA0870.1	2	1	+	5.213528590999797	5.213528590999797	AAAACTTCCAGTGTT
chr8	141408243	141408244	chr8:141408244:G:T	rs59515857	G	T	G	Sox1_MA0870.1	13	1	-	5.719348611135846	4.551477881997682	AACACTTCCATCGCC
chr8	141465043	141465044	chr8:141465044:C:A	rs7846272	C	A	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr8	141467513	141467514	chr8:141467514:C:T	rs72685432	C	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr8	141527304	141527305	chr8:141527305:T:C	rs6578200	T	C	t	Sox1_MA0870.1	32	0	+	0	0	.
chr8	141541533	141541534	chr8:141541534:G:A	rs7017750	G	A	-	Sox1_MA0870.1	23	0	+	0	0	.
chr8	141622214	141622215	chr8:141622215:T:C	rs13263959	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr8	141679124	141679125	chr8:141679125:A:G	rs868481	A	G	G	Sox1_MA0870.1	13	1	-	5.579754899069721	3.4020996016187266	GACACTGGCATTCTT
chr8	141738321	141738322	chr8:141738322:G:A	rs77375767	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr8	141930693	141930694	chr8:141930694:G:A	rs114903020	G	A	G	Sox1_MA0870.1	7	1	+	7.635436944682473	8.032415272478982	GTCAATAGCATTGAG
chr8	142059052	142059053	chr8:142059053:G:A	rs183835912	G	A	G	Sox1_MA0870.1	12	1	-	5.203360750125086	5.203360750125086	AACAATGCCATTCGT
chr8	142231142	142231143	chr8:142231143:C:T	rs56031226	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr8	142394752	142394753	chr8:142394753:A:G	rs28433910	A	G	G	Sox1_MA0870.1	19	0	+	0	0	.
chr8	142406298	142406299	chr8:142406299:G:C	rs7462663	G	C	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr8	142905774	142905775	chr8:142905775:G:A	rs6987382	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr8	142905801	142905802	chr8:142905802:T:A	rs4736357	T	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr8	143107999	143108000	chr8:143108000:T:C	rs10102811	T	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr8	143467325	143467326	chr8:143467326:A:G	rs188342475	A	G	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr8	143467353	143467354	chr8:143467354:G:A	rs141299726	G	A	G	Sox1_MA0870.1	26	0	+	0	0	.
chr8	143559142	143559143	chr8:143559143:G:A	rs7840166	G	A	G	Sox1_MA0870.1	8	1	-	6.363805004606075	2.1821954579687923	CAGAATTACAGTGTT
chr8	143754635	143754636	chr8:143754636:T:A	rs12680066	T	A	t	Sox1_MA0870.1	-10	0	-	0	0	.
chr8	143796317	143796318	chr8:143796318:C:T	rs58835571	C	T	G	Sox1_MA0870.1	4	1	+	5.291724367623415	0.47095904807844224	GACACAGGCATTGCT
chr8	143796334	143796335	chr8:143796335:C:T	rs115416870	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr8	143796346	143796347	chr8:143796347:C:T	rs188551135	C	T	C	Sox1_MA0870.1	33	0	+	0	0	.
chr8	143876051	143876052	chr8:143876052:C:T	rs76331009	C	T	.	Sox1_MA0870.1	20	0	-	0	0	.
chr8	143967774	143967775	chr8:143967775:T:C	rs112641794	T	C	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr8	144039437	144039438	chr8:144039438:C:G	rs62530310	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr8	144064020	144064021	chr8:144064021:C:T	rs77912488	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr8	144189706	144189707	chr8:144189707:C:T	rs139244008	C	T	c	Sox1_MA0870.1	0	1	+	3.377497392465865	2.675120635318385	CGCCCTGCCATTGTT
chr8	144189707	144189708	chr8:144189708:G:A	rs552144370	G	A	G	Sox1_MA0870.1	1	1	+	3.377497392465865	7.475788047859007	CGCCCTGCCATTGTT
chr8	144416972	144416973	chr8:144416973:G:A	rs117568226	G	A	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr8	144589459	144589460	chr8:144589460:G:C	rs141047234	G	C	G	Sox1_MA0870.1	0	1	+	3.554554996183672	3.6603807904354433	GACACTAACAGGGTG
chr8	144687846	144687847	chr8:144687847:A:G	rs367593356	A	G	-	Sox1_MA0870.1	6	1	+	6.820609122906609	5.282002429765891	CACACTAGCAGTGAG
chr8	144687849	144687850	chr8:144687850:A:G	rs2956181	A	G	-	Sox1_MA0870.1	9	1	+	6.820609122906609	-0.08814565640861194	CACACTAGCAGTGAG
chr8	145022140	145022141	chr8:145022141:A:G	rs12548151	A	G	a	Sox1_MA0870.1	25	0	-	0	0	.
chr9	259989	259990	chr9:259990:G:C	rs553489	G	C	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	326766	326767	chr9:326767:C:T	rs1556022	C	T	C	Sox1_MA0870.1	19	0	+	0	0	.
chr9	474204	474205	chr9:474205:A:G	rs7867795	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr9	474238	474239	chr9:474239:G:A	rs7850568	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	534257	534258	chr9:534258:G:C	rs7031554	G	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr9	550776	550777	chr9:550777:C:T	rs79076661	C	T	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	550781	550782	chr9:550782:A:G	rs2804279	A	G	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr9	590226	590227	chr9:590227:G:T	rs16920607	G	T	g	Sox1_MA0870.1	18	0	-	0	0	.
chr9	592849	592850	chr9:592850:C:T	rs2804285	C	T	T	Sox1_MA0870.1	26	0	+	0	0	.
chr9	663658	663659	chr9:663659:T:C	rs4237165	T	C	T	Sox1_MA0870.1	27	0	-	0	0	.
chr9	663675	663676	chr9:663676:C:T	rs2885160	C	T	T	Sox1_MA0870.1	10	1	-	3.877427540651433	-0.6901446149213394	GACACTTCCAGAGTT
chr9	717892	717893	chr9:717893:C:G	rs16923077	C	G	C	Sox1_MA0870.1	31	0	+	0	0	.
chr9	735017	735018	chr9:735018:T:G	rs781522381	T	G	T	Sox1_MA0870.1	15	0	+	0	0	.
chr9	761812	761813	chr9:761813:C:A	rs6477206	C	A	A	Sox1_MA0870.1	-9	0	+	0	0	.
chr9	801570	801571	chr9:801571:G:A	rs10815717	G	A	G	Sox1_MA0870.1	2	1	-	5.301346746247061	-1.6074080330681588	AGCAATTTCTTTGTT
chr9	887018	887019	chr9:887019:A:G	rs10815945	A	G	A	Sox1_MA0870.1	23	0	-	0	0	.
chr9	968053	968054	chr9:968054:A:G	rs35846503	A	G	A	Sox1_MA0870.1	-4	0	+	0	0	.
chr9	1013192	1013193	chr9:1013193:C:A	rs113802100	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	1032566	1032567	chr9:1032567:G:A	rs1016565	G	A	A	Sox1_MA0870.1	1	1	-	3.8732532431022126	4.3651093807855705	CCCAATGGCATTTTT
chr9	1049615	1049616	chr9:1049616:T:G	rs6474542	T	G	G	Sox1_MA0870.1	30	0	+	0	0	.
chr9	1216634	1216635	chr9:1216635:C:T	rs3920797	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	1222607	1222608	chr9:1222608:C:G	rs10960495	C	G	C	Sox1_MA0870.1	17	0	-	0	0	.
chr9	1222644	1222645	chr9:1222645:G:C	rs9298671	G	C	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr9	1415078	1415079	chr9:1415079:A:C	rs148179666	A	C	A	Sox1_MA0870.1	7	1	-	3.5413305226526077	3.5859420749405153	GCCAAGATCATTGTG
chr9	1428033	1428034	chr9:1428034:G:A	rs10961409	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr9	1428058	1428059	chr9:1428059:C:A	rs10961410	C	A	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	1459662	1459663	chr9:1459663:T:C	rs10114417	T	C	T	Sox1_MA0870.1	10	1	+	15.342766790967262	8.534069706830929	TACAATATCATTGTT
chr9	1535169	1535170	chr9:1535170:G:A	rs541318510	G	A	G	Sox1_MA0870.1	23	0	+	0	0	.
chr9	1603984	1603985	chr9:1603985:C:G	rs702161	C	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr9	2018657	2018658	chr9:2018658:C:T	rs1999979	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	2019053	2019054	chr9:2019054:T:C	chr9:2019054:T:C	T	C	T	Sox1_MA0870.1	14	1	-	7.674412154287993	7.849743391355037	AACATTTGCATTGTA
chr9	2228076	2228077	chr9:2228077:A:G	rs7350291	A	G	A	Sox1_MA0870.1	5	1	-	4.933048541644239	-1.9701162170035198	TCCAATGACATTGGA
chr9	2228088	2228089	chr9:2228089:C:T	rs62528850	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	2228404	2228405	chr9:2228405:G:C	rs10965286	G	C	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	2237179	2237180	chr9:2237180:G:A	rs73641017	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr9	2295571	2295572	chr9:2295572:T:C	rs16938276	T	C	T	Sox1_MA0870.1	11	1	+	4.302250097240001	-0.6531448885703328	ACCAGTTACATTGTA
chr9	2425856	2425857	chr9:2425857:C:G	rs10491710	C	G	C	Sox1_MA0870.1	7	1	-	3.56931502637803	3.5365325266384966	CACAAGGGCATTGCA
chr9	2497313	2497314	chr9:2497314:G:C	rs869507	G	C	C	Sox1_MA0870.1	12	1	+	6.1986594189046595	-0.7100953604105609	CACAATGCCACTGTC
chr9	2526148	2526149	chr9:2526149:G:C	rs2183736	G	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr9	2540567	2540568	chr9:2540568:G:A	rs1398432	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr9	2632364	2632365	chr9:2632365:T:G	rs12336893	T	G	T	Sox1_MA0870.1	20	0	+	0	0	.
chr9	2639532	2639533	chr9:2639533:A:G	rs34156497	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr9	3018722	3018723	chr9:3018723:A:G	rs10757940	A	G	G	Sox1_MA0870.1	10	1	-	7.621165714258719	0.8124686301223863	CAGACTAACATTGTT
chr9	3117003	3117004	chr9:3117004:G:A	rs12683952	G	A	G	Sox1_MA0870.1	-10	0	+	0	0	.
chr9	3345372	3345373	chr9:3345373:G:A	rs7867276	G	A	G	Sox1_MA0870.1	26	0	-	0	0	.
chr9	3736277	3736278	chr9:3736278:G:T	rs3802409	G	T	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	3856677	3856678	chr9:3856678:A:G	rs10814699	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr9	3980481	3980482	chr9:3980482:T:G	chr9:3980482:T:G	T	G	T	Sox1_MA0870.1	26	0	-	0	0	.
chr9	4032789	4032790	chr9:4032790:A:G	rs7043922	A	G	A	Sox1_MA0870.1	4	1	+	3.795024737509752	-2.9825535166604356	GCCAATAGCATTCTC
chr9	4069812	4069813	chr9:4069813:A:G	rs2027393	A	G	G	Sox1_MA0870.1	9	1	+	6.7201589764823115	-0.18859580283290966	TAAAATACCATTGTG
chr9	4207973	4207974	chr9:4207974:G:C	rs13289602	G	C	A	Sox1_MA0870.1	30	0	-	0	0	.
chr9	4226629	4226630	chr9:4226630:C:T	rs10814891	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr9	4226642	4226643	chr9:4226643:T:C	rs10814892	T	C	T	Sox1_MA0870.1	29	0	+	0	0	.
chr9	4292847	4292848	chr9:4292848:A:G	rs17660864	A	G	A	Sox1_MA0870.1	-16	0	-	0	0	.
chr9	4334457	4334458	chr9:4334458:C:T	rs117566625	C	T	C	Sox1_MA0870.1	2	1	+	5.851600635806345	-1.057154143508877	AACAATTGTAGTGCA
chr9	4334460	4334461	chr9:4334461:T:C	rs116333668	T	C	T	Sox1_MA0870.1	5	1	+	5.851600635806345	-1.0515641228414152	AACAATTGTAGTGCA
chr9	4396958	4396959	chr9:4396959:T:C	rs34786443	T	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr9	4555436	4555437	chr9:4555437:C:T	rs62542090	C	T	c	Sox1_MA0870.1	11	1	-	3.5145649827855787	3.5145649827855787	AACAATAGCATGTTT
chr9	4636989	4636990	chr9:4636990:G:A	rs4740797	G	A	G	Sox1_MA0870.1	28	0	+	0	0	.
chr9	4644977	4644978	chr9:4644978:T:A	rs418122	T	A	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	4644978	4644979	chr9:4644979:T:C	rs364802	T	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	4677452	4677453	chr9:4677453:T:C	rs7847302	T	C	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr9	4677453	4677454	chr9:4677454:G:T	rs10974724	G	T	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr9	4734293	4734294	chr9:4734294:T:C	rs140956177	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr9	4798367	4798368	chr9:4798368:C:T	rs73641878	C	T	T	Sox1_MA0870.1	14	1	+	3.3252273306757463	4.836236735157151	AACAAGAGCAGTGAC
chr9	4834393	4834394	chr9:4834394:A:G	rs457287	A	G	A	Sox1_MA0870.1	13	1	-	7.561020991116628	5.383365693665635	TACAATTTCACTGTT
chr9	4834419	4834420	chr9:4834420:G:A	rs10974805	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr9	4853886	4853887	chr9:4853887:G:T	rs80277240	G	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr9	5042756	5042757	chr9:5042757:G:A	rs59225790	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr9	5389418	5389419	chr9:5389419:G:A	rs111832850	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	5420253	5420254	chr9:5420254:G:A	rs10121219	G	A	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	5517264	5517265	chr9:5517265:G:A	rs28581351	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr9	6230669	6230670	chr9:6230670:C:G	rs10815383	C	G	C	Sox1_MA0870.1	32	0	-	0	0	.
chr9	6230682	6230683	chr9:6230683:C:A	rs892720677	C	A	C	Sox1_MA0870.1	19	0	-	0	0	.
chr9	6278070	6278071	chr9:6278071:A:G	rs2169284	A	G	A	Sox1_MA0870.1	26	0	+	0	0	.
chr9	6406427	6406428	chr9:6406428:G:T	rs10758782	G	T	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr9	6723832	6723833	chr9:6723833:G:A	rs2990660	G	A	g	Sox1_MA0870.1	21	0	+	0	0	.
chr9	6759530	6759531	chr9:6759531:C:T	chr9:6759531:C:T	C	T	C	Sox1_MA0870.1	1	1	+	9.061829518992383	9.553685656675741	CCCAATTTCAGTGTT
chr9	6803075	6803076	chr9:6803076:G:A	rs62567989	G	A	G	Sox1_MA0870.1	8	1	-	6.363805004606075	2.1821954579687928	CACAATTACGGTGTT
chr9	6835418	6835419	chr9:6835419:C:T	rs7030531	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr9	6986463	6986464	chr9:6986464:G:C	rs35826653	G	C	G	Sox1_MA0870.1	17	0	+	0	0	.
chr9	6988418	6988419	chr9:6988419:T:C	rs2760648	T	C	C	Sox1_MA0870.1	24	0	-	0	0	.
chr9	6988438	6988439	chr9:6988439:T:C	rs2760649	T	C	T	Sox1_MA0870.1	4	1	-	5.301397011957696	-1.476181242212491	TTCAATAGCAATGTT
chr9	7022909	7022910	chr9:7022910:G:A	rs10975984	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr9	7032775	7032776	chr9:7032776:G:A	rs1407862	G	A	A	Sox1_MA0870.1	32	0	-	0	0	.
chr9	7065748	7065749	chr9:7065749:T:G	rs4740868	T	G	T	Sox1_MA0870.1	-12	0	-	0	0	.
chr9	7072097	7072098	chr9:7072098:A:G	rs4740870	A	G	A	Sox1_MA0870.1	31	0	-	0	0	.
chr9	7076462	7076463	chr9:7076463:G:A	rs1570512	G	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	7166457	7166458	chr9:7166458:A:G	rs12379356	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr9	7171711	7171712	chr9:7171712:C:T	rs112126468	C	T	C	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	7177283	7177284	chr9:7177284:A:G	rs2026714	A	G	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	7185821	7185822	chr9:7185822:G:T	rs10976101	G	T	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr9	7273572	7273573	chr9:7273573:C:T	rs1928201	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	7303864	7303865	chr9:7303865:G:A	rs10976202	G	A	G	Sox1_MA0870.1	10	1	+	4.980080709650284	0.41250855407751186	GACAATCAGAGTGTT
chr9	7379570	7379571	chr9:7379571:G:A	rs2381587	G	A	A	Sox1_MA0870.1	8	1	-	4.190745998304269	0.00913645166698751	CTCAGTAACAGTGTT
chr9	7461870	7461871	chr9:7461871:T:C	rs2997572	T	C	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	7695592	7695593	chr9:7695593:T:C	rs12553833	T	C	T	Sox1_MA0870.1	4	1	-	7.315325473432075	0.5377472192618873	CACCATAGCATTGCC
chr9	7701934	7701935	chr9:7701935:C:G	rs7021768	C	G	C	Sox1_MA0870.1	4	1	+	4.681632435519407	-0.13913288402556434	GCCACTACCATTGGA
chr9	7777549	7777550	chr9:7777550:T:C	rs7034632	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr9	7857878	7857879	chr9:7857879:A:C	rs10976628	A	C	A	Sox1_MA0870.1	15	0	-	0	0	.
chr9	7906932	7906933	chr9:7906933:C:A	rs12347060	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	7963226	7963227	chr9:7963227:A:G	rs34119686	A	G	A	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	8264660	8264661	chr9:8264661:C:T	rs10976895	C	T	C	Sox1_MA0870.1	25	0	+	0	0	.
chr9	8417500	8417501	chr9:8417501:A:C	rs12377175	A	C	A	Sox1_MA0870.1	28	0	+	0	0	.
chr9	8430032	8430033	chr9:8430033:C:T	rs4742502	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr9	8468632	8468633	chr9:8468633:T:C	rs13291309	T	C	T	Sox1_MA0870.1	30	0	-	0	0	.
chr9	8816664	8816665	chr9:8816665:T:C	rs7872026	T	C	T	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	8843784	8843785	chr9:8843785:C:A	rs78749485	C	A	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	8856907	8856908	chr9:8856908:C:T	rs751372	C	T	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr9	8901681	8901682	chr9:8901682:T:G	rs1433540	T	G	T	Sox1_MA0870.1	9	1	-	4.350177424322126	-2.5585773549930946	TACACTAGCATGGCT
chr9	9044830	9044831	chr9:9044831:G:A	rs72694907	G	A	G	Sox1_MA0870.1	27	0	-	0	0	.
chr9	9499125	9499126	chr9:9499126:G:A	rs2382019	G	A	A	Sox1_MA0870.1	19	0	-	0	0	.
chr9	9537064	9537065	chr9:9537065:T:C	rs16929670	T	C	C	Sox1_MA0870.1	15	0	+	0	0	.
chr9	9726250	9726251	chr9:9726251:A:C	rs7048068	A	C	A	Sox1_MA0870.1	1	1	+	9.074054017869726	5.304913633025226	AACACTGACATTGGC
chr9	9806902	9806903	chr9:9806903:G:C	chr9:9806903:G:C	G	C	G	Sox1_MA0870.1	0	1	-	4.246734609758924	4.140908815507153	CACAAGTGCAGTGTG
chr9	9919287	9919288	chr9:9919288:G:C	rs10978087	G	C	g	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	9924591	9924592	chr9:9924592:A:G	rs12553808	A	G	a	Sox1_MA0870.1	31	0	+	0	0	.
chr9	9951279	9951280	chr9:9951280:G:A	rs73643834	G	A	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	10131154	10131155	chr9:10131155:G:A	rs291305	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr9	10232764	10232765	chr9:10232765:C:G	rs13288348	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr9	10265616	10265617	chr9:10265617:C:T	rs2475346	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr9	10273832	10273833	chr9:10273833:C:G	rs1323502	C	G	G	Sox1_MA0870.1	20	0	+	0	0	.
chr9	10538374	10538375	chr9:10538375:T:A	rs10156436	T	A	T	Sox1_MA0870.1	-6	0	-	0	0	.
chr9	10591937	10591938	chr9:10591938:G:T	rs62539615	G	T	G	Sox1_MA0870.1	0	1	+	7.117097423012189	6.520546460116483	GACAATTTGATTGCA
chr9	11795400	11795401	chr9:11795401:C:G	rs10960238	C	G	c	Sox1_MA0870.1	-18	0	-	0	0	.
chr9	11962622	11962623	chr9:11962623:T:A	rs73646822	T	A	t	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	12274757	12274758	chr9:12274758:C:A	rs537325334	C	A	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	12274773	12274774	chr9:12274774:T:C	rs12555009	T	C	T	Sox1_MA0870.1	10	1	+	4.81140108859473	-1.997295995541604	CTCACTTGCATTGAG
chr9	12274794	12274795	chr9:12274795:C:T	rs142335293	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr9	12318993	12318994	chr9:12318994:G:A	rs7853736	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr9	12414206	12414207	chr9:12414207:T:G	rs1984031	T	G	T	Sox1_MA0870.1	-9	0	+	0	0	.
chr9	12599560	12599561	chr9:12599561:C:T	rs13283146	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	12604338	12604339	chr9:12604339:G:A	rs527970674	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr9	12723112	12723113	chr9:12723113:G:A	rs12379260	G	A	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr9	12735666	12735667	chr9:12735667:G:T	rs7047704	G	T	G	Sox1_MA0870.1	15	0	-	0	0	.
chr9	12814163	12814164	chr9:12814164:T:C	rs76663000	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr9	13171366	13171367	chr9:13171367:C:T	rs12553978	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr9	13365528	13365529	chr9:13365529:A:G	rs13284661	A	G	A	Sox1_MA0870.1	10	1	-	4.858131824559571	-1.950565259576761	AACAAAATAATTGTC
chr9	13493397	13493398	chr9:13493398:C:T	rs17521660	C	T	C	Sox1_MA0870.1	-17	0	-	0	0	.
chr9	13697668	13697669	chr9:13697669:C:A	rs2382403	C	A	C	Sox1_MA0870.1	32	0	-	0	0	.
chr9	13705859	13705860	chr9:13705860:G:A	rs180827221	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr9	13705882	13705883	chr9:13705883:T:C	rs992457	T	C	T	Sox1_MA0870.1	1	1	-	8.604929933169636	4.506639277776495	CATAATTACATTGTT
chr9	13726331	13726332	chr9:13726332:C:G	rs10810009	C	G	C	Sox1_MA0870.1	23	0	+	0	0	.
chr9	14022404	14022405	chr9:14022405:G:T	rs10810078	G	T	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	14152436	14152437	chr9:14152437:A:C	rs10756531	A	C	A	Sox1_MA0870.1	6	1	-	5.605836232434134	5.040278255007719	CCCACTTCCAGTGTC
chr9	14197498	14197499	chr9:14197499:A:G	rs10738355	A	G	G	Sox1_MA0870.1	-15	0	+	0	0	.
chr9	14256730	14256731	chr9:14256731:T:C	chr9:14256731:T:C	T	C	T	Sox1_MA0870.1	11	1	+	3.679752233408408	-1.275642752401926	GACAAGACCATTGGG
chr9	14814668	14814669	chr9:14814669:T:C	rs147801323	T	C	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	14849217	14849218	chr9:14849218:C:T	rs12236064	C	T	C	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	15390259	15390260	chr9:15390260:T:A	rs2490859	T	A	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	15390276	15390277	chr9:15390277:T:G	rs13298276	T	G	T	Sox1_MA0870.1	6	1	+	5.716562720375265	5.151004742948848	AACAAGTTCATTGCC
chr9	15525196	15525197	chr9:15525197:C:G	rs1828382	C	G	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	15966437	15966438	chr9:15966438:G:T	rs2987011	G	T	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr9	16098364	16098365	chr9:16098365:A:G	rs75443270	A	G	A	Sox1_MA0870.1	27	0	+	0	0	.
chr9	16197114	16197115	chr9:16197115:T:C	rs7020120	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr9	16268756	16268757	chr9:16268757:T:C	rs4961477	T	C	T	Sox1_MA0870.1	11	1	+	3.8902592949017456	-1.065135690908589	CAAAATGGCAGTGTC
chr9	16282415	16282416	chr9:16282416:T:G	rs56152796	T	G	T	Sox1_MA0870.1	34	0	-	0	0	.
chr9	16282420	16282421	chr9:16282421:G:A	rs55650163	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr9	16289749	16289750	chr9:16289750:C:G	rs150791389	C	G	C	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	16331168	16331169	chr9:16331169:C:A	rs9407755	C	A	A	Sox1_MA0870.1	14	1	+	4.246080270521725	3.8560763502179816	AACAATTTCCTTGGC
chr9	16357577	16357578	chr9:16357578:T:C	rs7028338	T	C	T	Sox1_MA0870.1	3	1	-	7.597782075658804	0.6971924084615789	CACAATGTCATTATT
chr9	16449789	16449790	chr9:16449790:T:C	rs12338207	T	C	T	Sox1_MA0870.1	3	1	-	4.537205245934128	-2.3633844212630977	CCCATTTCCATTGTT
chr9	16515298	16515299	chr9:16515299:G:A	rs76982071	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr9	16628248	16628249	chr9:16628249:A:G	rs76753553	A	G	A	Sox1_MA0870.1	8	1	-	7.197606933771364	11.379216480408644	CACACTTATATTGCT
chr9	16679670	16679671	chr9:16679671:C:T	rs78486918	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr9	16884794	16884795	chr9:16884795:A:G	rs115860057	A	G	A	Sox1_MA0870.1	34	0	-	0	0	.
chr9	17230087	17230088	chr9:17230088:G:A	rs10962917	G	A	A	Sox1_MA0870.1	25	0	-	0	0	.
chr9	17409013	17409014	chr9:17409014:A:G	rs2584548	A	G	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	17579935	17579936	chr9:17579936:A:G	rs150030811	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr9	17674873	17674874	chr9:17674874:G:A	rs4418424	G	A	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	17674920	17674921	chr9:17674921:G:C	rs4601434	G	C	C	Sox1_MA0870.1	30	0	+	0	0	.
chr9	17810447	17810448	chr9:17810448:A:G	rs142247745	A	G	A	Sox1_MA0870.1	1	1	-	3.9545544231133434	3.462698285429985	ATCACTAACACTGTG
chr9	17865867	17865868	chr9:17865868:A:G	rs17765335	A	G	A	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	18032733	18032734	chr9:18032734:T:C	rs10963402	T	C	C	Sox1_MA0870.1	16	0	-	0	0	.
chr9	18115482	18115483	chr9:18115483:A:T	rs117285455	A	T	A	Sox1_MA0870.1	33	0	-	0	0	.
chr9	18142396	18142397	chr9:18142397:G:A	rs79811056	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	18237989	18237990	chr9:18237990:G:A	rs11795321	G	A	A	Sox1_MA0870.1	26	0	+	0	0	.
chr9	18238315	18238316	chr9:18238316:C:T	rs7038985	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr9	18239200	18239201	chr9:18239201:C:T	rs10756951	C	T	T	Sox1_MA0870.1	23	0	-	0	0	.
chr9	18346979	18346980	chr9:18346980:T:A	rs4961640	T	A	A	Sox1_MA0870.1	16	0	-	0	0	.
chr9	18385144	18385145	chr9:18385145:A:G	rs17792334	A	G	A	Sox1_MA0870.1	5	1	-	4.225605335277096	-2.677559423370664	CACAATAGCATCATT
chr9	18428942	18428943	chr9:18428943:G:A	rs145690887	G	A	G	Sox1_MA0870.1	-12	0	-	0	0	.
chr9	18623303	18623304	chr9:18623304:C:T	rs147541624	C	T	C	Sox1_MA0870.1	12	1	-	4.303688322760785	-2.6050664565544355	AACAATTACATGGGA
chr9	18739844	18739845	chr9:18739845:C:T	rs2482970	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr9	18795680	18795681	chr9:18795681:G:A	rs7847591	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr9	18921538	18921539	chr9:18921539:T:C	rs10963841	T	C	T	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	19018561	19018562	chr9:19018562:T:C	rs10963907	T	C	T	Sox1_MA0870.1	11	1	+	4.711360243003838	-0.24403474280649518	CACAAAAGTATTGCT
chr9	19457948	19457949	chr9:19457949:A:G	rs10811188	A	G	A	Sox1_MA0870.1	14	1	+	6.5776102391548	6.752941476221844	TAAAATAGCATTGTA
chr9	19801037	19801038	chr9:19801038:G:T	rs117681571	G	T	G	Sox1_MA0870.1	2	1	-	4.0252503258146	-2.883504453500621	AACAATACTTTTGCT
chr9	19940144	19940145	chr9:19940145:G:T	rs10124918	G	T	T	Sox1_MA0870.1	3	1	+	3.7264607465763877	5.1127551076962785	ACCGCTTGCATTGTT
chr9	19980276	19980277	chr9:19980277:A:G	rs1857432	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr9	20022681	20022682	chr9:20022682:T:C	rs10811299	T	C	T	Sox1_MA0870.1	21	0	+	0	0	.
chr9	20084211	20084212	chr9:20084212:A:G	rs12342499	A	G	a	Sox1_MA0870.1	33	0	-	0	0	.
chr9	20244759	20244760	chr9:20244760:A:G	rs1379217	A	G	A	Sox1_MA0870.1	4	1	+	4.4568216657219	-2.3207565884482864	TACAATAACAGTACT
chr9	20284947	20284948	chr9:20284948:T:A	rs10811341	T	A	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	20321212	20321213	chr9:20321213:C:T	rs1034585	C	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	20474047	20474048	chr9:20474048:C:A	rs377202107	C	A	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	20552721	20552722	chr9:20552722:C:T	rs10121833	C	T	T	Sox1_MA0870.1	4	1	-	5.790794260232365	12.568372514402554	AACAGTTATATTGTT
chr9	20693258	20693259	chr9:20693259:C:G	rs1268823438	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr9	21005397	21005398	chr9:21005398:A:C	rs4129715	A	C	C	Sox1_MA0870.1	21	0	+	0	0	.
chr9	21556874	21556875	chr9:21556875:A:G	chr9:21556875:A:G	A	G	A	Sox1_MA0870.1	32	0	-	0	0	.
chr9	21556881	21556882	chr9:21556882:T:C	rs4141713	T	C	C	Sox1_MA0870.1	25	0	-	0	0	.
chr9	21782164	21782165	chr9:21782165:G:A	rs10811615	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	21993048	21993049	chr9:21993049:G:A	rs3731191	G	A	G	Sox1_MA0870.1	4	1	-	6.174748254165726	1.3539829346207535	AAAACTATCAGTGTT
chr9	22097693	22097694	chr9:22097694:G:A	rs6475607	G	A	G	Sox1_MA0870.1	33	0	+	0	0	.
chr9	22115026	22115027	chr9:22115027:A:G	rs2383206	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	22212314	22212315	chr9:22212315:T:C	rs114110369	T	C	T	Sox1_MA0870.1	21	0	-	0	0	.
chr9	22229217	22229218	chr9:22229218:C:G	rs527401840	C	G	C	Sox1_MA0870.1	24	0	+	0	0	.
chr9	22229223	22229224	chr9:22229224:C:T	rs79084604	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr9	22342482	22342483	chr9:22342483:T:C	rs1327060	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr9	22883107	22883108	chr9:22883108:C:T	rs10115720	C	T	T	Sox1_MA0870.1	26	0	-	0	0	.
chr9	22969960	22969961	chr9:22969961:T:G	chr9:22969961:T:G	T	G	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr9	22990144	22990145	chr9:22990145:C:T	rs2126637	C	T	T	Sox1_MA0870.1	2	1	+	10.384515169902878	3.4757603905876553	AACAATACCATTTTT
chr9	23218975	23218976	chr9:23218976:G:C	rs1339143	G	C	G	Sox1_MA0870.1	22	0	-	0	0	.
chr9	23382383	23382384	chr9:23382384:T:C	rs2094889	T	C	t	Sox1_MA0870.1	1	1	-	3.561239104598224	-0.5370515507949171	AACCATATCTTTGTG
chr9	23471508	23471509	chr9:23471509:T:C	chr9:23471509:T:C	T	C	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr9	23471509	23471510	chr9:23471510:T:G	chr9:23471510:T:G	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	23746450	23746451	chr9:23746451:G:C	rs116854588	G	C	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	24649570	24649571	chr9:24649571:G:A	rs1591105	G	A	A	Sox1_MA0870.1	20	0	+	0	0	.
chr9	24649581	24649582	chr9:24649582:C:T	rs4484783	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr9	25036154	25036155	chr9:25036155:T:C	rs72718145	T	C	T	Sox1_MA0870.1	4	1	-	3.8759694830138094	-2.9016087711563774	AACCATATCACTGTC
chr9	25188507	25188508	chr9:25188508:A:G	rs7033077	A	G	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	25377628	25377629	chr9:25377629:G:A	rs10738713	G	A	A	Sox1_MA0870.1	17	0	-	0	0	.
chr9	25393679	25393680	chr9:25393680:C:G	rs10757524	C	G	G	Sox1_MA0870.1	-9	0	+	0	0	.
chr9	25564465	25564466	chr9:25564466:C:T	rs13295475	C	T	C	Sox1_MA0870.1	1	1	+	4.646732797884787	5.138588935568146	ACTACTATCATTGTT
chr9	25602722	25602723	chr9:25602723:C:G	rs1986439	C	G	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	26266242	26266243	chr9:26266243:T:C	rs115120252	T	C	T	Sox1_MA0870.1	6	1	-	5.108060396587547	3.569453703446829	GGCAGTAGCATTGTT
chr9	26435579	26435580	chr9:26435580:G:C	rs72716233	G	C	G	Sox1_MA0870.1	33	0	+	0	0	.
chr9	26453724	26453725	chr9:26453725:G:A	rs6475897	G	A	A	Sox1_MA0870.1	0	1	+	4.307188368187474	5.649311510994229	GACACTTACAGAGTT
chr9	26565914	26565915	chr9:26565915:A:C	rs1887221	A	C	A	Sox1_MA0870.1	-1	0	+	0	0	.
chr9	26896721	26896722	chr9:26896722:C:T	rs77953007	C	T	c	Sox1_MA0870.1	18	0	+	0	0	.
chr9	27200359	27200360	chr9:27200360:C:T	rs7039849	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	27227884	27227885	chr9:27227885:G:A	rs62542576	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	27303033	27303034	chr9:27303034:T:C	rs59382932	T	C	T	Sox1_MA0870.1	13	1	+	5.19204134509579	3.014386047644796	AACAAACGCATTGTG
chr9	27441755	27441756	chr9:27441756:G:A	rs544839701	G	A	G	Sox1_MA0870.1	13	1	-	4.198788425952258	6.376443723403252	GACAATTGCATTACG
chr9	27499628	27499629	chr9:27499629:C:A	rs2492812	C	A	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	27572312	27572313	chr9:27572313:A:C	rs73643419	A	C	A	Sox1_MA0870.1	16	0	-	0	0	.
chr9	27581488	27581489	chr9:27581489:G:A	rs111787602	G	A	G	Sox1_MA0870.1	30	0	+	0	0	.
chr9	27584900	27584901	chr9:27584901:T:C	rs10757670	T	C	T	Sox1_MA0870.1	3	1	-	8.039371955743219	1.1387822885459928	CACAATGACATTATT
chr9	27591804	27591805	chr9:27591805:G:A	rs3861017	G	A	A	Sox1_MA0870.1	15	0	-	0	0	.
chr9	28108008	28108009	chr9:28108009:T:C	rs10812742	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr9	28215695	28215696	chr9:28215696:C:T	rs4604546	C	T	T	Sox1_MA0870.1	-8	0	-	0	0	.
chr9	29077748	29077749	chr9:29077749:A:T	rs17419297	A	T	T	Sox1_MA0870.1	9	1	+	8.573151068875356	1.6643962895601354	AATAATAACAGTGTT
chr9	29078513	29078514	chr9:29078514:C:G	rs13296159	C	G	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	29440768	29440769	chr9:29440769:C:T	rs7037405	C	T	T	Sox1_MA0870.1	18	0	+	0	0	.
chr9	29440776	29440777	chr9:29440777:C:G	rs7037409	C	G	G	Sox1_MA0870.1	26	0	+	0	0	.
chr9	29472688	29472689	chr9:29472689:C:T	rs529598330	C	T	C	Sox1_MA0870.1	-9	0	+	0	0	.
chr9	29472721	29472722	chr9:29472722:T:A	rs549860029	T	A	T	Sox1_MA0870.1	24	0	+	0	0	.
chr9	29472728	29472729	chr9:29472729:C:T	rs55971094	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr9	29638168	29638169	chr9:29638169:G:T	rs546929	G	T	G	Sox1_MA0870.1	21	0	-	0	0	.
chr9	29657655	29657656	chr9:29657656:G:C	rs7024034	G	C	C	Sox1_MA0870.1	16	0	+	0	0	.
chr9	29686720	29686721	chr9:29686721:A:G	rs12004303	A	G	A	Sox1_MA0870.1	4	1	+	8.336239969701602	1.5586617155314104	AACAATTACATAGTC
chr9	29750005	29750006	chr9:29750006:A:T	rs12376898	A	T	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	29869620	29869621	chr9:29869621:A:G	rs10969420	A	G	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr9	29887376	29887377	chr9:29887377:T:C	rs9406932	T	C	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr9	30140556	30140557	chr9:30140557:C:G	rs12349038	C	G	C	Sox1_MA0870.1	4	1	-	4.625658971784247	9.446424291329219	AACAGTAACAGTGCA
chr9	30698143	30698144	chr9:30698144:C:T	rs7027645	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr9	30844311	30844312	chr9:30844312:A:C	rs10969889	A	C	C	Sox1_MA0870.1	11	1	-	4.239443521212718	-2.6632891656441138	TCCACTCCCATTGTT
chr9	30924480	30924481	chr9:30924481:A:G	rs199793339	A	G	A	Sox1_MA0870.1	15	0	-	0	0	.
chr9	30924498	30924499	chr9:30924499:A:G	rs10969977	A	G	A	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	31030959	31030960	chr9:31030960:T:G	rs550708606	T	G	T	Sox1_MA0870.1	9	1	-	5.945163033193742	-0.963591746121479	TCCACTGGCATTGCT
chr9	31350128	31350129	chr9:31350129:C:T	rs16924059	C	T	C	Sox1_MA0870.1	8	1	+	6.695850467970477	2.5142409213331947	AAAAATACCATTGCC
chr9	31394026	31394027	chr9:31394027:A:G	rs7857709	A	G	G	Sox1_MA0870.1	32	0	-	0	0	.
chr9	31868955	31868956	chr9:31868956:A:G	rs73646911	A	G	G	Sox1_MA0870.1	22	0	+	0	0	.
chr9	31988817	31988818	chr9:31988818:T:A	rs11795371	T	A	T	Sox1_MA0870.1	13	1	+	4.129087808037361	0.7835617814482022	CACAAAACCATTTTT
chr9	32196937	32196938	chr9:32196938:G:A	rs10283638	G	A	G	Sox1_MA0870.1	13	1	+	5.633121577661125	5.930143277709039	AAGAATGACATTGGT
chr9	32344872	32344873	chr9:32344873:A:G	rs12550887	A	G	A	Sox1_MA0870.1	5	1	-	3.4557410719434025	-3.447423686704356	GACAATACCTGTGAT
chr9	32378957	32378958	chr9:32378958:A:G	rs10813801	A	G	A	Sox1_MA0870.1	10	1	-	5.024409597136444	-1.7842874869998897	TTCTATGCCATTGTT
chr9	32741594	32741595	chr9:32741595:C:T	rs1410832	C	T	T	Sox1_MA0870.1	30	0	-	0	0	.
chr9	33026122	33026123	chr9:33026123:G:A	rs16918953	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	33028978	33028979	chr9:33028979:C:T	rs12377889	C	T	C	Sox1_MA0870.1	-12	0	-	0	0	.
chr9	33029257	33029258	chr9:33029258:A:C	rs190465417	A	C	A	Sox1_MA0870.1	33	0	-	0	0	.
chr9	33039025	33039026	chr9:33039026:T:A	rs7296	T	A	T	Sox1_MA0870.1	15	0	+	0	0	.
chr9	33051541	33051542	chr9:33051542:T:C	rs7846968	T	C	G	Sox1_MA0870.1	1	1	-	3.4274415011293398	-0.6708491542638004	CACACTATCAGTATC
chr9	33069182	33069183	chr9:33069183:C:T	rs13289835	C	T	T	Sox1_MA0870.1	34	0	-	0	0	.
chr9	33069206	33069207	chr9:33069207:C:A	rs62542143	C	A	C	Sox1_MA0870.1	10	1	-	6.450490653360745	8.691615581924305	AAAAATAGCAGTGTG
chr9	33081476	33081477	chr9:33081477:A:G	rs539626117	A	G	A	Sox1_MA0870.1	-5	0	+	0	0	.
chr9	33162658	33162659	chr9:33162659:A:G	chr9:33162659:A:G	A	G	A	Sox1_MA0870.1	9	1	+	3.880870730049704	-3.027884049265517	GACAATCCCATCGTG
chr9	33221374	33221375	chr9:33221375:T:C	rs16919079	T	C	T	Sox1_MA0870.1	4	1	-	5.459553119415496	-1.3180251347546919	CACAATACCCTTGCC
chr9	33232272	33232273	chr9:33232273:C:A	rs891671	C	A	C	Sox1_MA0870.1	12	1	-	3.601024296289275	-3.3077304830259457	AACAGTTTCAGTGCC
chr9	33236165	33236166	chr9:33236166:A:G	rs1702669	A	G	A	Sox1_MA0870.1	4	1	+	4.088504203489979	-2.6890740506802095	CGCCATTACAGTGTT
chr9	33618678	33618679	chr9:33618679:A:G	rs855513	A	G	g	Sox1_MA0870.1	34	0	-	0	0	.
chr9	33676028	33676029	chr9:33676029:C:A	rs855465	C	A	.	Sox1_MA0870.1	20	0	-	0	0	.
chr9	33680617	33680618	chr9:33680618:A:C	rs12683646	A	C	.	Sox1_MA0870.1	31	0	+	0	0	.
chr9	33715239	33715240	chr9:33715240:T:C	rs2049809	T	C	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	33715244	33715245	chr9:33715245:C:G	rs12379456	C	G	C	Sox1_MA0870.1	2	1	+	3.920581035301716	-2.988173744013503	AACCATAGCACTGTC
chr9	33715249	33715250	chr9:33715250:G:C	rs150720721	G	C	G	Sox1_MA0870.1	7	1	+	3.920581035301716	3.8877985355621827	AACCATAGCACTGTC
chr9	33896078	33896079	chr9:33896079:A:G	rs34576091	A	G	A	Sox1_MA0870.1	33	0	-	0	0	.
chr9	33949840	33949841	chr9:33949841:A:G	rs10971815	A	G	a	Sox1_MA0870.1	11	1	-	5.323040193790691	0.3676452079803558	GAAAATAGCAGTGTC
chr9	34036530	34036531	chr9:34036531:G:C	rs1629188	G	C	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	34180582	34180583	chr9:34180583:G:A	chr9:34180583:G:A	G	A	g	Sox1_MA0870.1	16	0	+	0	0	.
chr9	34186395	34186396	chr9:34186396:T:C	rs756611485	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	34469918	34469919	chr9:34469919:G:T	chr9:34469919:G:T	G	T	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	34771232	34771233	chr9:34771233:T:G	rs117042148	T	G	T	Sox1_MA0870.1	32	0	+	0	0	.
chr9	34960171	34960172	chr9:34960172:C:T	rs145637357	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr9	34985493	34985494	chr9:34985494:G:A	rs73497327	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	35060748	35060749	chr9:35060749:A:G	rs562381	A	G	G	Sox1_MA0870.1	0	1	+	4.762987404957216	3.4208642621504612	ATCAATTACAATGTA
chr9	35640296	35640297	chr9:35640297:C:T	rs10972539	C	T	C	Sox1_MA0870.1	11	1	-	5.111350822227125	5.111350822227125	AACACTAACAGGGTC
chr9	35646678	35646679	chr9:35646679:T:C	rs373906537	T	C	T	Sox1_MA0870.1	10	1	+	4.9211063431207025	-1.88759074101563	AAAAATAAAATTGTT
chr9	35802585	35802586	chr9:35802586:C:T	rs5812	C	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr9	35807544	35807545	chr9:35807545:C:T	rs13294264	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr9	35882216	35882217	chr9:35882217:T:C	rs78016065	T	C	T	Sox1_MA0870.1	32	0	+	0	0	.
chr9	35895797	35895798	chr9:35895798:G:A	rs12380372	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	35948590	35948591	chr9:35948591:T:C	rs10972638	T	C	T	Sox1_MA0870.1	18	0	+	0	0	.
chr9	36175049	36175050	chr9:36175050:G:A	rs890312773	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr9	36438732	36438733	chr9:36438733:T:C	rs62546163	T	C	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	36891637	36891638	chr9:36891638:T:G	rs12551556	T	G	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	36949354	36949355	chr9:36949355:C:T	rs62533677	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr9	37385987	37385988	chr9:37385988:C:T	rs3899197	C	T	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	37405237	37405238	chr9:37405238:C:T	rs2087357	C	T	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	37437765	37437766	chr9:37437766:C:G	rs117306138	C	G	C	Sox1_MA0870.1	26	0	+	0	0	.
chr9	37529288	37529289	chr9:37529289:G:A	rs34323368	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr9	37679946	37679947	chr9:37679947:C:A	chr9:37679947:C:A	C	A	C	Sox1_MA0870.1	2	1	+	6.19216732738156	-0.7165874519336596	AACACCACCAGTGTT
chr9	37693959	37693960	chr9:37693960:C:T	rs7025444	C	T	T	Sox1_MA0870.1	10	1	-	10.099585681507842	5.532013525935071	CACAATGCCAGTGCT
chr9	37724197	37724198	chr9:37724198:A:G	rs10814609	A	G	A	Sox1_MA0870.1	18	0	-	0	0	.
chr9	37727385	37727386	chr9:37727386:A:G	rs12554587	A	G	A	Sox1_MA0870.1	31	0	+	0	0	.
chr9	37987360	37987361	chr9:37987361:G:A	rs1384727740	G	A	G	Sox1_MA0870.1	21	0	+	0	0	.
chr9	38314568	38314569	chr9:38314569:C:T	rs36056385	C	T	C	Sox1_MA0870.1	11	1	+	3.9255997118219517	8.880994697632286	CCCAATGGCATCGTA
chr9	39036298	39036299	chr9:39036299:C:G	rs414044	C	G	-	Sox1_MA0870.1	12	1	-	14.377504750164979	7.468749970849759	AACAATAACATTGAT
chr9	39038534	39038535	chr9:39038535:T:C	rs62567338	T	C	T	Sox1_MA0870.1	-20	0	+	0	0	.
chr9	39082859	39082860	chr9:39082860:C:T	rs56121395	C	T	c	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	39828562	39828563	chr9:39828563:A:C	rs28696198	A	C	A	Sox1_MA0870.1	32	0	-	0	0	.
chr9	40868685	40868686	chr9:40868686:A:C	rs10907917	A	C	.	Sox1_MA0870.1	23	0	-	0	0	.
chr9	40909098	40909099	chr9:40909099:A:T	rs74481819	A	T	.	Sox1_MA0870.1	-13	0	-	0	0	.
chr9	40910581	40910582	chr9:40910582:G:A	rs962600246	G	A	.	Sox1_MA0870.1	23	0	+	0	0	.
chr9	40911895	40911896	chr9:40911896:C:A	rs891200271	C	A	.	Sox1_MA0870.1	20	0	-	0	0	.
chr9	40925037	40925038	chr9:40925038:C:A	rs62555113	C	A	.	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	40927573	40927574	chr9:40927574:C:A	rs1831622	C	A	.	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	41806944	41806945	chr9:41806945:C:G	rs560711265	C	G	.	Sox1_MA0870.1	8	1	-	5.8074756559836	9.577978648883937	CACAATAAGATTTTT
chr9	42160447	42160448	chr9:42160448:T:C	rs144621459	T	C	t	Sox1_MA0870.1	9	1	-	4.476092008014377	-2.432662771300843	ACCAAGAGCATTGCT
chr9	42347509	42347510	chr9:42347510:C:T	rs1326784622	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr9	42951512	42951513	chr9:42951513:A:G	rs1386556680	A	G	.	Sox1_MA0870.1	33	0	+	0	0	.
chr9	43187484	43187485	chr9:43187485:A:T	rs1304861855	A	T	.	Sox1_MA0870.1	11	1	-	6.994723664840807	0.09199097798397415	TACAAAAAGATTGTT
chr9	43925791	43925792	chr9:43925792:C:T	rs1424506570	C	T	.	Sox1_MA0870.1	12	1	-	5.4559754934247255	-1.4527792858904953	CACAAAAAGAGTGTT
chr9	60617405	60617406	chr9:60617406:A:C	rs1364248048	A	C	.	Sox1_MA0870.1	-20	0	+	0	0	.
chr9	64437997	64437998	chr9:64437998:T:A	rs373818045	T	A	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	66655825	66655826	chr9:66655826:G:A	rs542507249	G	A	G	Sox1_MA0870.1	2	1	-	3.7149994378599516	-3.1937553414552684	TGCACTGGCATTGCA
chr9	66697102	66697103	chr9:66697103:C:T	rs2320633	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	68502362	68502363	chr9:68502363:T:C	rs923784	T	C	T	Sox1_MA0870.1	9	1	-	5.362697102469713	-1.5460576768455065	AACAATTGTACTGTT
chr9	68533694	68533695	chr9:68533695:T:C	rs148536917	T	C	T	Sox1_MA0870.1	5	1	+	4.543219415298506	-2.359945343349253	CTCCATTCCATTGCT
chr9	68546692	68546693	chr9:68546693:G:A	rs149733952	G	A	G	Sox1_MA0870.1	17	0	+	0	0	.
chr9	68779845	68779846	chr9:68779846:G:A	rs58984094	G	A	G	Sox1_MA0870.1	28	0	-	0	0	.
chr9	68782817	68782818	chr9:68782818:A:G	rs1412988	A	G	A	Sox1_MA0870.1	13	1	-	7.170341525625014	4.992686228174021	AACAATTCCTGTGTT
chr9	68782830	68782831	chr9:68782831:T:C	rs2017	T	C	T	Sox1_MA0870.1	0	1	-	7.170341525625014	5.828218382818262	AACAATTCCTGTGTT
chr9	68867943	68867944	chr9:68867944:A:G	rs11144066	A	G	A	Sox1_MA0870.1	9	1	+	5.839051247370193	-1.069703531945028	ACCAAATGCATTGTG
chr9	68942424	68942425	chr9:68942425:A:G	rs3829061	A	G	A	Sox1_MA0870.1	10	1	-	5.084204774654749	-1.7244923094815845	AACCCTTTTATTGTT
chr9	69120720	69120721	chr9:69120721:T:G	chr9:69120721:T:G	T	G	T	Sox1_MA0870.1	1	1	-	2.782295765918027	-0.9868446189264718	AACCCTGCCAGTGCC
chr9	69156022	69156023	chr9:69156023:G:A	rs11145488	G	A	G	Sox1_MA0870.1	14	1	+	6.343661223663718	6.168329986596674	GAGAATTCCATTGTG
chr9	69657510	69657511	chr9:69657511:C:T	rs565577900	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr9	70034293	70034294	chr9:70034294:G:C	rs12553082	G	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr9	70081651	70081652	chr9:70081652:A:G	rs1986412	A	G	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	70404033	70404034	chr9:70404034:C:T	rs28404495	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	70414417	70414418	chr9:70414418:G:C	rs115977087	G	C	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	70414429	70414430	chr9:70414430:T:C	rs1205461121	T	C	T	Sox1_MA0870.1	5	1	+	4.057668300105325	-2.8454964585424354	GTCACTGGCATTGGC
chr9	70565198	70565199	chr9:70565199:G:T	rs12351436	G	T	G	Sox1_MA0870.1	19	0	-	0	0	.
chr9	70682519	70682520	chr9:70682520:A:G	rs4237243	A	G	G	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	70699692	70699693	chr9:70699693:G:A	rs10116217	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr9	70699701	70699702	chr9:70699702:C:T	rs62543305	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr9	70747477	70747478	chr9:70747478:C:T	rs10511986	C	T	C	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	70833843	70833844	chr9:70833844:T:C	rs2039641	T	C	T	Sox1_MA0870.1	16	0	+	0	0	.
chr9	70964444	70964445	chr9:70964445:T:C	rs35806768	T	C	T	Sox1_MA0870.1	10	1	+	3.812625749332421	-2.996071334803912	CTCAGTATCATTGCT
chr9	71029899	71029900	chr9:71029900:A:G	rs11142672	A	G	a	Sox1_MA0870.1	29	0	+	0	0	.
chr9	71255903	71255904	chr9:71255904:A:G	rs1504404	A	G	A	Sox1_MA0870.1	3	1	+	4.423320386532353	-2.477269280664871	CACAATTATCTTGTT
chr9	71541256	71541257	chr9:71541257:A:G	rs10512000	A	G	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr9	71592602	71592603	chr9:71592603:G:A	rs72737923	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr9	71592604	71592605	chr9:71592605:A:C	rs11142907	A	C	C	Sox1_MA0870.1	17	0	+	0	0	.
chr9	71775145	71775146	chr9:71775146:T:C	rs771233086	T	C	T	Sox1_MA0870.1	3	1	-	5.895483626540615	-1.0051060406566088	CACACTAACATTCTG
chr9	71775163	71775164	chr9:71775164:T:C	rs3970316	T	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	71795217	71795218	chr9:71795218:A:G	rs76872287	A	G	A	Sox1_MA0870.1	24	0	-	0	0	.
chr9	71795231	71795232	chr9:71795232:A:G	rs186801801	A	G	A	Sox1_MA0870.1	10	1	-	6.913955641493431	0.10525855735709788	TACACTTGCATTGGA
chr9	72110072	72110073	chr9:72110073:T:C	rs10735611	T	C	T	Sox1_MA0870.1	6	1	+	5.359947173849768	0.9437968867308663	AACCATTGTATTGTG
chr9	72396816	72396817	chr9:72396817:A:G	rs10869172	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	72468970	72468971	chr9:72468971:G:A	rs10869179	G	A	G	Sox1_MA0870.1	-4	0	+	0	0	.
chr9	72726830	72726831	chr9:72726831:C:T	rs1444824	C	T	T	Sox1_MA0870.1	32	0	-	0	0	.
chr9	72881032	72881033	chr9:72881033:G:A	rs72734830	G	A	C	Sox1_MA0870.1	32	0	+	0	0	.
chr9	73039592	73039593	chr9:73039593:C:G	chr9:73039593:C:G	C	G	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr9	73151848	73151849	chr9:73151849:C:G	rs772490050	C	G	C	Sox1_MA0870.1	21	0	-	0	0	.
chr9	73214067	73214068	chr9:73214068:C:T	rs4363267	C	T	C	Sox1_MA0870.1	19	0	-	0	0	.
chr9	73411817	73411818	chr9:73411818:T:G	rs12006282	T	G	T	Sox1_MA0870.1	26	0	-	0	0	.
chr9	74200393	74200394	chr9:74200394:T:A	rs4263838	T	A	A	Sox1_MA0870.1	10	1	+	11.68898479098753	4.880287706851195	GTCAATTTCATTGTT
chr9	74344093	74344094	chr9:74344094:C:T	rs7046187	C	T	C	Sox1_MA0870.1	31	0	+	0	0	.
chr9	74344502	74344503	chr9:74344503:A:G	rs34581853	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr9	74839485	74839486	chr9:74839486:A:T	rs35669196	A	T	A	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	75113238	75113239	chr9:75113239:G:T	rs11144236	G	T	G	Sox1_MA0870.1	-17	0	-	0	0	.
chr9	75133672	75133673	chr9:75133673:A:G	rs7857698	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	75151937	75151938	chr9:75151938:A:G	rs2093449	A	G	A	Sox1_MA0870.1	6	1	+	4.86078248045884	3.322175787318123	GACAATACTATTATT
chr9	75383577	75383578	chr9:75383578:G:A	rs11144417	G	A	A	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	75396824	75396825	chr9:75396825:G:A	rs75718389	G	A	G	Sox1_MA0870.1	2	1	-	6.4994438266832795	-0.4093109526319402	TACAATTTTATTGCC
chr9	75451791	75451792	chr9:75451792:G:A	rs73545847	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr9	75453185	75453186	chr9:75453186:A:G	rs500859	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr9	75453292	75453293	chr9:75453293:G:A	rs10122599	G	A	G	Sox1_MA0870.1	2	1	-	5.483031958313905	-1.4257228210013153	AACAAGTGCAGTGTG
chr9	75453305	75453306	chr9:75453306:C:T	rs9314833	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr9	75649377	75649378	chr9:75649378:T:C	rs12346159	T	C	C	Sox1_MA0870.1	28	0	-	0	0	.
chr9	76183431	76183432	chr9:76183432:G:A	rs34530537	G	A	G	Sox1_MA0870.1	12	1	+	4.317326232300113	-2.591428547015107	CACATTTACAGTGCT
chr9	76383774	76383775	chr9:76383775:C:T	rs34046058	C	T	C	Sox1_MA0870.1	3	1	+	5.027975124770931	4.59944474373177	CTCCATTGCATTGTG
chr9	76450382	76450383	chr9:76450383:A:C	rs11144905	A	C	A	Sox1_MA0870.1	9	1	+	9.707404201376445	2.7986494220612244	AACCCTTACATTGTT
chr9	76631122	76631123	chr9:76631123:C:G	rs73650264	C	G	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr9	76634844	76634845	chr9:76634845:T:A	rs7045505	T	A	T	Sox1_MA0870.1	3	1	-	3.645741507930609	-1.8685537981467264	AACATTAGCATAGTT
chr9	76688255	76688256	chr9:76688256:G:A	rs761319848	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr9	76725383	76725384	chr9:76725384:G:C	rs4745576	G	C	C	Sox1_MA0870.1	4	1	-	7.93824798921619	3.1174826696712183	GACACTTTCATTGAG
chr9	76835198	76835199	chr9:76835199:T:C	rs13297748	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr9	76897792	76897793	chr9:76897793:T:C	rs34919927	T	C	T	Sox1_MA0870.1	10	1	+	6.725748997149774	-0.08294808698656075	TACAAGACCATTGTG
chr9	76921621	76921622	chr9:76921622:A:G	rs56253538	A	G	A	Sox1_MA0870.1	21	0	-	0	0	.
chr9	77690137	77690138	chr9:77690138:A:G	rs1855654	A	G	A	Sox1_MA0870.1	-20	0	-	0	0	.
chr9	77715801	77715802	chr9:77715802:G:C	rs4745664	G	C	C	Sox1_MA0870.1	-1	0	-	0	0	.
chr9	77854830	77854831	chr9:77854831:G:T	rs7048811	G	T	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	78278674	78278675	chr9:78278675:T:C	rs149585469	T	C	T	Sox1_MA0870.1	23	0	-	0	0	.
chr9	78292318	78292319	chr9:78292319:T:C	rs62565621	T	C	T	Sox1_MA0870.1	5	1	+	5.075585010814457	-1.8275797478333016	GAAAATACCAGTGTG
chr9	78507441	78507442	chr9:78507442:G:A	rs986319494	G	A	G	Sox1_MA0870.1	-10	0	-	0	0	.
chr9	78559453	78559454	chr9:78559454:G:T	rs3009700	G	T	T	Sox1_MA0870.1	23	0	+	0	0	.
chr9	78778183	78778184	chr9:78778184:C:G	rs10867270	C	G	c	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	78865779	78865780	chr9:78865780:A:G	rs7046415	A	G	G	Sox1_MA0870.1	4	1	-	4.7258644554953415	9.546629775040316	AACATTTACATTGAA
chr9	78924035	78924036	chr9:78924036:G:A	rs7874303	G	A	G	Sox1_MA0870.1	29	0	+	0	0	.
chr9	79445904	79445905	chr9:79445905:G:T	rs11138221	G	T	T	Sox1_MA0870.1	14	1	+	6.752941476221844	8.478623563939948	TACAATAGCATTATG
chr9	79510317	79510318	chr9:79510318:G:A	rs10780313	G	A	G	Sox1_MA0870.1	29	0	-	0	0	.
chr9	79610371	79610372	chr9:79610372:C:T	rs192789076	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	79610372	79610373	chr9:79610373:G:A	rs115623536	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr9	79735849	79735850	chr9:79735850:A:G	rs4077795	A	G	A	Sox1_MA0870.1	-19	0	-	0	0	.
chr9	79952896	79952897	chr9:79952897:T:C	rs17729057	T	C	T	Sox1_MA0870.1	3	1	-	6.615374785058377	-0.28521488213884816	ACCAATACCATTCTT
chr9	80131940	80131941	chr9:80131941:T:C	rs10867471	T	C	T	Sox1_MA0870.1	3	1	-	5.519286770436746	-1.3813028967604806	TCCACTAGCAGTGTA
chr9	80176234	80176235	chr9:80176235:A:G	rs4877160	A	G	G	Sox1_MA0870.1	20	0	+	0	0	.
chr9	80385591	80385592	chr9:80385592:C:T	rs7861030	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr9	80385593	80385594	chr9:80385594:G:A	rs12380683	G	A	G	Sox1_MA0870.1	21	0	-	0	0	.
chr9	80426395	80426396	chr9:80426396:G:A	rs10512100	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	80670398	80670399	chr9:80670399:C:T	rs141560702	C	T	C	Sox1_MA0870.1	24	0	-	0	0	.
chr9	80679059	80679060	chr9:80679060:G:A	rs72751011	G	A	G	Sox1_MA0870.1	10	1	+	7.866931563577768	3.299359408004995	TACAATACCAGTGAA
chr9	80772469	80772470	chr9:80772470:G:A	rs4483241	G	A	A	Sox1_MA0870.1	33	0	-	0	0	.
chr9	80857732	80857733	chr9:80857733:C:T	rs1547137	C	T	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	81074494	81074495	chr9:81074495:G:A	rs17268798	G	A	G	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	81074506	81074507	chr9:81074507:G:A	rs1929706	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	81490876	81490877	chr9:81490877:G:A	rs183315155	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	81639903	81639904	chr9:81639904:A:G	rs10867787	A	G	A	Sox1_MA0870.1	17	0	-	0	0	.
chr9	81752266	81752267	chr9:81752267:T:C	rs75122168	T	C	T	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	82271468	82271469	chr9:82271469:A:G	rs117156887	A	G	A	Sox1_MA0870.1	5	1	-	4.127251113030164	-2.775913645617595	TACACTAAGAGTGCC
chr9	82533081	82533082	chr9:82533082:G:T	rs1888328	G	T	T	Sox1_MA0870.1	32	0	+	0	0	.
chr9	82680379	82680380	chr9:82680380:A:G	rs11794369	A	G	G	Sox1_MA0870.1	11	1	-	4.501840207684841	-0.4535547781254935	CGCACTAACAGTGCC
chr9	82718690	82718691	chr9:82718691:A:C	rs556689	A	C	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	82882924	82882925	chr9:82882925:G:C	rs17733409	G	C	G	Sox1_MA0870.1	32	0	+	0	0	.
chr9	83247903	83247904	chr9:83247904:G:A	rs78846594	G	A	G	Sox1_MA0870.1	31	0	+	0	0	.
chr9	83454321	83454322	chr9:83454322:C:T	rs4877767	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	83667425	83667426	chr9:83667426:G:A	rs4877791	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr9	83704774	83704775	chr9:83704775:G:A	rs7860614	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	84102090	84102091	chr9:84102091:G:A	rs35664751	G	A	G	Sox1_MA0870.1	32	0	-	0	0	.
chr9	84169831	84169832	chr9:84169832:A:T	rs871228	A	T	T	Sox1_MA0870.1	22	0	+	0	0	.
chr9	84851359	84851360	chr9:84851360:G:A	rs73474471	G	A	G	Sox1_MA0870.1	-8	0	-	0	0	.
chr9	84852206	84852207	chr9:84852207:A:G	rs986748515	A	G	A	Sox1_MA0870.1	19	0	+	0	0	.
chr9	84860598	84860599	chr9:84860599:G:A	rs78934541	G	A	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	84860616	84860617	chr9:84860617:G:T	rs192838986	G	T	G	Sox1_MA0870.1	7	1	+	4.988784242246798	4.944172689958892	GTCAAATGCATTGTG
chr9	84924748	84924749	chr9:84924749:G:A	rs763623	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr9	85700270	85700271	chr9:85700271:A:G	rs11141068	A	G	A	Sox1_MA0870.1	7	1	-	3.77846827359442	3.7902973261427935	TACACTTTCGTTGTG
chr9	86127196	86127197	chr9:86127197:C:T	rs73650927	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr9	86127199	86127200	chr9:86127200:A:G	rs147450450	A	G	C	Sox1_MA0870.1	20	0	-	0	0	.
chr9	86145842	86145843	chr9:86145843:A:G	rs4466477	A	G	A	Sox1_MA0870.1	3	1	+	3.749156118219855	-3.151433548977371	CTCAGTATCAGTGTT
chr9	86689589	86689590	chr9:86689590:A:G	rs2026341	A	G	A	Sox1_MA0870.1	10	1	-	5.260457517387966	-1.5482395667483675	CTCACATACATTGTT
chr9	86794851	86794852	chr9:86794852:T:G	chr9:86794852:T:G	T	G	T	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	86990237	86990238	chr9:86990238:C:T	rs6559958	C	T	C	Sox1_MA0870.1	23	0	-	0	0	.
chr9	87055381	87055382	chr9:87055382:T:C	rs4878037	T	C	T	Sox1_MA0870.1	-18	0	-	0	0	.
chr9	87064249	87064250	chr9:87064250:G:T	rs113566533	G	T	G	Sox1_MA0870.1	22	0	-	0	0	.
chr9	87081056	87081057	chr9:87081057:C:T	rs116002010	C	T	C	Sox1_MA0870.1	13	1	+	3.080077871150764	5.257733168601758	AACATTGGCAGTGCC
chr9	87081061	87081062	chr9:87081062:A:G	rs73654955	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr9	87451282	87451283	chr9:87451283:C:T	rs1329598	C	T	C	Sox1_MA0870.1	-18	0	-	0	0	.
chr9	87480108	87480109	chr9:87480109:T:G	rs10780842	T	G	G	Sox1_MA0870.1	21	0	+	0	0	.
chr9	87541930	87541931	chr9:87541931:C:T	rs1041326	C	T	C	Sox1_MA0870.1	17	0	-	0	0	.
chr9	87555918	87555919	chr9:87555919:C:T	rs12685588	C	T	C	Sox1_MA0870.1	8	1	+	3.9067099949642765	-0.27489955167300595	AACAATTGCATGGGA
chr9	87563938	87563939	chr9:87563939:C:T	rs147070602	C	T	C	Sox1_MA0870.1	31	0	-	0	0	.
chr9	87863439	87863440	chr9:87863440:C:A	rs11142007	C	A	-	Sox1_MA0870.1	31	0	-	0	0	.
chr9	88031966	88031967	chr9:88031967:C:T	rs61741160	C	T	.	Sox1_MA0870.1	8	1	+	3.0178169393203205	-1.1637926073169615	GACACAGCCAGTGCT
chr9	88218954	88218955	chr9:88218955:C:T	rs192114045	C	T	C	Sox1_MA0870.1	12	1	-	5.4868033451246365	-1.421951434190584	AACAAAGGGATTGTC
chr9	88218955	88218956	chr9:88218956:A:G	rs2438400	A	G	G	Sox1_MA0870.1	11	1	-	5.4868033451246365	0.5314083593143024	AACAAAGGGATTGTC
chr9	88230860	88230861	chr9:88230861:C:A	rs73652529	C	A	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr9	88583970	88583971	chr9:88583971:C:G	rs9410665	C	G	C	Sox1_MA0870.1	21	0	-	0	0	.
chr9	88583980	88583981	chr9:88583981:A:G	rs28496878	A	G	A	Sox1_MA0870.1	11	1	-	4.291682390277332	-0.6637125955330019	CAAAATACCATTGAC
chr9	88584076	88584077	chr9:88584077:A:G	rs17054242	A	G	A	Sox1_MA0870.1	10	1	-	4.9644316446921035	-1.84426543944423	GGCAATTGGATTGCT
chr9	88661928	88661929	chr9:88661929:A:G	rs77485037	A	G	A	Sox1_MA0870.1	20	0	-	0	0	.
chr9	88718891	88718892	chr9:88718892:G:C	rs28489203	G	C	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	88747331	88747332	chr9:88747332:G:T	rs28517748	G	T	G	Sox1_MA0870.1	20	0	-	0	0	.
chr9	88747355	88747356	chr9:88747356:G:A	rs145821518	G	A	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	88757610	88757611	chr9:88757611:T:C	rs28666530	T	C	C	Sox1_MA0870.1	32	0	-	0	0	.
chr9	88808695	88808696	chr9:88808696:T:G	rs2653814	T	G	G	Sox1_MA0870.1	13	1	+	13.040139002780526	9.397591276143453	CACAATGGCATTGTC
chr9	88856592	88856593	chr9:88856593:G:T	rs55935740	G	T	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	88915661	88915662	chr9:88915662:C:T	rs11137450	C	T	T	Sox1_MA0870.1	21	0	-	0	0	.
chr9	88952621	88952622	chr9:88952622:G:A	rs9410285	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr9	88996071	88996072	chr9:88996072:C:T	rs41286041	C	T	C	Sox1_MA0870.1	-10	0	+	0	0	.
chr9	88997663	88997664	chr9:88997664:T:A	rs72748922	T	A	T	Sox1_MA0870.1	24	0	+	0	0	.
chr9	89154843	89154844	chr9:89154844:G:A	rs2039307	G	A	G	Sox1_MA0870.1	2	1	-	4.041645739747106	-2.8671090395681165	GTCTATTGCATTGCT
chr9	89154847	89154848	chr9:89154848:A:G	rs1888642	A	G	A	Sox1_MA0870.1	-2	0	-	0	0	.
chr9	89363675	89363676	chr9:89363676:C:T	rs76395868	C	T	C	Sox1_MA0870.1	4	1	+	6.680878643803413	1.8601133242584424	TTCACTGCCATTGTA
chr9	89490504	89490505	chr9:89490505:T:C	rs9695896	T	C	C	Sox1_MA0870.1	1	1	-	5.5036495204953555	1.405358865102214	CACACTGACAGTGAA
chr9	89519585	89519586	chr9:89519586:C:T	rs117965518	C	T	C	Sox1_MA0870.1	-6	0	-	0	0	.
chr9	89519589	89519590	chr9:89519590:T:C	rs147545213	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr9	89574597	89574598	chr9:89574598:A:C	rs7030895	A	C	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	89576469	89576470	chr9:89576470:G:A	rs187827108	G	A	G	Sox1_MA0870.1	16	0	-	0	0	.
chr9	89598317	89598318	chr9:89598318:A:G	rs554653982	A	G	A	Sox1_MA0870.1	4	1	+	5.730429344220068	-1.0471489099501192	AACCATGACATTGGG
chr9	89598332	89598333	chr9:89598333:G:A	chr9:89598333:G:A	G	A	G	Sox1_MA0870.1	19	0	+	0	0	.
chr9	89598333	89598334	chr9:89598334:C:A	rs10120108	C	A	C	Sox1_MA0870.1	20	0	+	0	0	.
chr9	89598342	89598343	chr9:89598343:A:C	rs143474207	A	C	A	Sox1_MA0870.1	29	0	+	0	0	.
chr9	89604687	89604688	chr9:89604688:A:G	rs145026737	A	G	A	Sox1_MA0870.1	19	0	-	0	0	.
chr9	89720968	89720969	chr9:89720969:C:T	rs76941768	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr9	89735702	89735703	chr9:89735703:A:T	rs1046992296	A	T	A	Sox1_MA0870.1	11	1	-	6.785573469015762	-0.1171592178410703	GCCACTGCCATTGTA
chr9	89750413	89750414	chr9:89750414:A:G	rs187042200	A	G	A	Sox1_MA0870.1	4	1	+	10.593570019784208	3.8159917656140205	CACAATAGGATTGTG
chr9	89803030	89803031	chr9:89803031:C:T	rs576061849	C	T	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr9	89803070	89803071	chr9:89803071:T:C	rs184904920	T	C	T	Sox1_MA0870.1	28	0	+	0	0	.
chr9	89840516	89840517	chr9:89840517:G:T	rs878855487	G	T	G	Sox1_MA0870.1	12	1	+	4.946296315426907	-1.962458463888313	GACACCAGCATTGCT
chr9	89840532	89840533	chr9:89840533:A:G	rs979530006	A	G	A	Sox1_MA0870.1	28	0	+	0	0	.
chr9	89841117	89841118	chr9:89841118:A:C	rs36143929	A	C	A	Sox1_MA0870.1	15	0	-	0	0	.
chr9	89848987	89848988	chr9:89848988:C:T	rs878937885	C	T	c	Sox1_MA0870.1	19	0	-	0	0	.
chr9	89890317	89890318	chr9:89890318:T:C	rs914523227	T	C	T	Sox1_MA0870.1	5	1	+	4.218639095765093	-2.684525662882666	GACAATAGCATTAAC
chr9	89969430	89969431	chr9:89969431:C:T	rs76436224	C	T	C	Sox1_MA0870.1	28	0	-	0	0	.
chr9	89969454	89969455	chr9:89969455:G:A	rs74757203	G	A	A	Sox1_MA0870.1	4	1	-	2.9691197212508964	-1.8516455982940756	CCCACTAGCAGTGGC
chr9	90220163	90220164	chr9:90220164:G:T	rs113246651	G	T	G	Sox1_MA0870.1	-12	0	+	0	0	.
chr9	90505801	90505802	chr9:90505802:G:A	rs41281210	G	A	G	Sox1_MA0870.1	20	0	-	0	0	.
chr9	90699366	90699367	chr9:90699367:A:G	rs1173107	A	G	.	Sox1_MA0870.1	33	0	-	0	0	.
chr9	90739307	90739308	chr9:90739308:C:T	rs1582994	C	T	.	Sox1_MA0870.1	-1	0	+	0	0	.
chr9	90744789	90744790	chr9:90744790:G:A	rs557070124	G	A	.	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	90840371	90840372	chr9:90840372:C:T	rs140369985	C	T	C	Sox1_MA0870.1	-11	0	-	0	0	.
chr9	91100049	91100050	chr9:91100050:A:C	rs16907164	A	C	C	Sox1_MA0870.1	-19	0	-	0	0	.
chr9	91119071	91119072	chr9:91119072:T:G	rs2296751	T	G	G	Sox1_MA0870.1	23	0	-	0	0	.
chr9	91156066	91156067	chr9:91156067:C:T	rs10991789	C	T	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	91176668	91176669	chr9:91176669:G:A	rs1705276	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr9	91515736	91515737	chr9:91515737:G:A	rs7028882	G	A	A	Sox1_MA0870.1	22	0	+	0	0	.
chr9	91529095	91529096	chr9:91529096:C:T	rs10820870	C	T	C	Sox1_MA0870.1	14	1	-	5.113957531221454	4.9386262941544095	GACAACAGCAGTGTG
chr9	91558786	91558787	chr9:91558787:G:T	rs2131301	G	T	G	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	91800398	91800399	chr9:91800399:T:C	rs7029814	T	C	C	Sox1_MA0870.1	32	0	+	0	0	.
chr9	91947577	91947578	chr9:91947578:G:A	rs62565755	G	A	G	Sox1_MA0870.1	34	0	+	0	0	.
chr9	91992980	91992981	chr9:91992981:A:C	rs7872437	A	C	A	Sox1_MA0870.1	19	0	-	0	0	.
chr9	92019630	92019631	chr9:92019631:C:T	rs79121984	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr9	92407114	92407115	chr9:92407115:C:T	rs117516582	C	T	C	Sox1_MA0870.1	34	0	+	0	0	.
chr9	92551004	92551005	chr9:92551005:A:T	rs10761163	A	T	A	Sox1_MA0870.1	31	0	+	0	0	.
chr9	92600382	92600383	chr9:92600383:G:A	rs1874128	G	A	A	Sox1_MA0870.1	-12	0	-	0	0	.
chr9	92620323	92620324	chr9:92620324:C:A	rs12238865	C	A	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	92811401	92811402	chr9:92811402:A:G	rs1853429	A	G	a	Sox1_MA0870.1	9	1	+	10.65006752387415	3.741312744558928	ACCAATTCCATTGTA
chr9	92949361	92949362	chr9:92949362:T:C	rs3936099	T	C	C	Sox1_MA0870.1	-12	0	+	0	0	.
chr9	93109318	93109319	chr9:93109319:C:T	rs377123575	C	T	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr9	93299423	93299424	chr9:93299424:G:T	rs72743442	G	T	G	Sox1_MA0870.1	20	0	-	0	0	.
chr9	93317087	93317088	chr9:93317088:A:G	rs10992704	A	G	A	Sox1_MA0870.1	1	1	+	2.562473968815512	-1.5358166865776295	CACACTTGCTTTGCC
chr9	93436815	93436816	chr9:93436816:C:G	rs10992731	C	G	G	Sox1_MA0870.1	33	0	+	0	0	.
chr9	93467279	93467280	chr9:93467280:T:C	rs7021689	T	C	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	93511393	93511394	chr9:93511394:C:T	rs1259700907	C	T	C	Sox1_MA0870.1	-5	0	+	0	0	.
chr9	93660045	93660046	chr9:93660046:A:G	rs73523906	A	G	A	Sox1_MA0870.1	33	0	+	0	0	.
chr9	93667120	93667121	chr9:93667121:A:G	rs1193045242	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr9	93667156	93667157	chr9:93667157:G:A	rs41297181	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr9	93730896	93730897	chr9:93730897:G:A	rs112974499	G	A	G	Sox1_MA0870.1	22	0	+	0	0	.
chr9	93869240	93869241	chr9:93869241:A:G	rs11787920	A	G	A	Sox1_MA0870.1	-1	0	-	0	0	.
chr9	93974016	93974017	chr9:93974017:G:A	rs1933671	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	94098316	94098317	chr9:94098317:A:T	rs73518294	A	T	.	Sox1_MA0870.1	21	0	+	0	0	.
chr9	94281244	94281245	chr9:94281245:C:T	rs6479534	C	T	T	Sox1_MA0870.1	-11	0	-	0	0	.
chr9	94559652	94559653	chr9:94559653:C:T	rs7039582	C	T	C	Sox1_MA0870.1	20	0	-	0	0	.
chr9	94803073	94803074	chr9:94803074:A:G	rs72746536	A	G	A	Sox1_MA0870.1	13	1	-	5.380070844394767	3.2024155469437736	TACAAAACCATCGTT
chr9	94883208	94883209	chr9:94883209:G:T	rs56319051	G	T	T	Sox1_MA0870.1	2	1	-	7.283886768167211	0.3751319888519893	TACAATTCCAGTGAC
chr9	94915273	94915274	chr9:94915274:A:G	rs12235316	A	G	A	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	95018690	95018691	chr9:95018691:A:G	rs62579892	A	G	A	Sox1_MA0870.1	10	1	-	8.460484735017193	1.6517876508808595	AACACTAGCATTCTT
chr9	95018709	95018710	chr9:95018710:G:C	rs3802455	G	C	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	95215855	95215856	chr9:95215856:T:A	rs4647457	T	A	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	95351378	95351379	chr9:95351379:C:T	rs1105979	C	T	C	Sox1_MA0870.1	10	1	-	4.3569658855691555	-0.21060627000361798	GACAATTACCGTGTA
chr9	95794218	95794219	chr9:95794219:T:A	rs138385576	T	A	T	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	96122489	96122490	chr9:96122490:C:T	rs76853823	C	T	C	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	96210147	96210148	chr9:96210148:A:G	rs11791270	A	G	a	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	96261246	96261247	chr9:96261247:G:A	rs79005077	G	A	G	Sox1_MA0870.1	4	1	-	5.706759049648407	0.8859937301034333	AACACTTACATTTCT
chr9	96491650	96491651	chr9:96491651:T:C	rs10991367	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	96501538	96501539	chr9:96501539:A:G	rs10820739	A	G	a	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	97062506	97062507	chr9:97062507:G:A	rs75989705	G	A	G	Sox1_MA0870.1	27	0	+	0	0	.
chr9	97292422	97292423	chr9:97292423:T:C	rs2615143	T	C	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr9	97345350	97345351	chr9:97345351:A:G	rs7034449	A	G	A	Sox1_MA0870.1	27	0	-	0	0	.
chr9	97345352	97345353	chr9:97345353:C:T	rs10435867	C	T	T	Sox1_MA0870.1	25	0	-	0	0	.
chr9	97385151	97385152	chr9:97385152:T:C	rs10759644	T	C	C	Sox1_MA0870.1	11	1	+	8.042131543844633	3.086736558034299	TGCAATTCCAGTGTT
chr9	97407735	97407736	chr9:97407736:G:A	rs55712525	G	A	G	Sox1_MA0870.1	18	0	+	0	0	.
chr9	97771713	97771714	chr9:97771714:T:C	rs12003414	T	C	T	Sox1_MA0870.1	22	0	+	0	0	.
chr9	98103515	98103516	chr9:98103516:A:C	rs7872652	A	C	C	Sox1_MA0870.1	33	0	+	0	0	.
chr9	98118669	98118670	chr9:98118670:C:T	chr9:98118670:C:T	C	T	C	Sox1_MA0870.1	6	1	-	7.193323158542006	8.731929851682722	CACACTGCCATTGGG
chr9	98165264	98165265	chr9:98165265:T:C	rs7032570	T	C	T	Sox1_MA0870.1	-1	0	+	0	0	.
chr9	98480738	98480739	chr9:98480739:T:C	rs2779547	T	C	T	Sox1_MA0870.1	9	1	-	3.91811077961114	-2.9906439997040817	AACAATACCATCATC
chr9	98627556	98627557	chr9:98627557:T:C	rs2779541	T	C	C	Sox1_MA0870.1	21	0	-	0	0	.
chr9	98630472	98630473	chr9:98630473:C:T	rs1547272	C	T	C	Sox1_MA0870.1	8	1	+	5.743697577356304	1.5620880307190221	GACACAGGCATTGTG
chr9	98779166	98779167	chr9:98779167:G:A	rs147385396	G	A	G	Sox1_MA0870.1	0	1	+	5.081175031481919	6.423298174288673	GACAAGACCAGTGTG
chr9	98909526	98909527	chr9:98909527:G:T	rs142992897	G	T	G	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	99056433	99056434	chr9:99056434:T:C	rs11788317	T	C	C	Sox1_MA0870.1	-4	0	+	0	0	.
chr9	99190887	99190888	chr9:99190888:C:T	rs10988745	C	T	T	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	99346134	99346135	chr9:99346135:G:A	rs147138188	G	A	G	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	99357156	99357157	chr9:99357157:G:A	rs7044297	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr9	99359506	99359507	chr9:99359507:A:G	chr9:99359507:A:G	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr9	99359556	99359557	chr9:99359557:G:A	rs77682886	G	A	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr9	99450702	99450703	chr9:99450703:T:C	rs7855403	T	C	C	Sox1_MA0870.1	6	1	+	7.66951752651223	3.253367239393329	TACAAATGCATTGTG
chr9	99690289	99690290	chr9:99690290:T:C	rs72744672	T	C	T	Sox1_MA0870.1	25	0	+	0	0	.
chr9	99711159	99711160	chr9:99711160:C:A	rs1147312	C	A	C	Sox1_MA0870.1	-13	0	-	0	0	.
chr9	99907932	99907933	chr9:99907933:T:A	rs7039716	T	A	A	Sox1_MA0870.1	30	0	-	0	0	.
chr9	100113898	100113899	chr9:100113899:T:C	rs7846794	T	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr9	100325080	100325081	chr9:100325081:T:A	rs4237195	T	A	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	100395232	100395233	chr9:100395233:C:A	rs12000794	C	A	C	Sox1_MA0870.1	6	1	-	3.697617770583322	4.263175748009739	CTCACTGCCAGTGAT
chr9	100438068	100438069	chr9:100438069:T:G	rs560161009	T	G	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr9	100438090	100438091	chr9:100438091:A:G	rs117222978	A	G	A	Sox1_MA0870.1	3	1	+	7.663571984273622	0.7629823170763974	AAGAATTACATTGCT
chr9	100463985	100463986	chr9:100463986:G:A	rs7034154	G	A	A	Sox1_MA0870.1	-19	0	+	0	0	.
chr9	100869447	100869448	chr9:100869448:G:C	rs17751690	G	C	G	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	100937501	100937502	chr9:100937502:A:G	rs1330181	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr9	101481726	101481727	chr9:101481727:C:A	rs16920423	C	A	C	Sox1_MA0870.1	2	1	+	5.187432897524619	-1.7213218817906015	CACAATACCAGGGTG
chr9	101653305	101653306	chr9:101653306:T:C	rs1323424	T	C	T	Sox1_MA0870.1	19	0	+	0	0	.
chr9	101663079	101663080	chr9:101663080:G:A	rs16920640	G	A	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr9	101675090	101675091	chr9:101675091:G:T	rs7469637	G	T	G	Sox1_MA0870.1	18	0	+	0	0	.
chr9	102046573	102046574	chr9:102046574:T:C	rs10820041	T	C	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	102372133	102372134	chr9:102372134:C:T	rs10116192	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr9	102587566	102587567	chr9:102587567:A:G	rs77289227	A	G	A	Sox1_MA0870.1	30	0	-	0	0	.
chr9	102729007	102729008	chr9:102729008:A:G	rs10820257	A	G	G	Sox1_MA0870.1	34	0	-	0	0	.
chr9	102729014	102729015	chr9:102729015:T:G	rs10118172	T	G	G	Sox1_MA0870.1	27	0	-	0	0	.
chr9	102867634	102867635	chr9:102867635:A:C	rs843278	A	C	C	Sox1_MA0870.1	0	1	+	6.417708153621213	5.18141080506623	AACAATACCAGTTTG
chr9	102867664	102867665	chr9:102867665:A:G	rs75011458	A	G	A	Sox1_MA0870.1	30	0	+	0	0	.
chr9	103206524	103206525	chr9:103206525:C:A	rs7856077	C	A	-	Sox1_MA0870.1	12	1	-	5.220331576133513	-1.6884232031817068	CCCAATTTTATTGTA
chr9	103533145	103533146	chr9:103533146:C:T	rs10760970	C	T	C	Sox1_MA0870.1	2	1	+	4.997294232232618	-1.9114605470826027	AACAGTAAGATTGCT
chr9	104091222	104091223	chr9:104091223:G:A	rs1999153	G	A	A	Sox1_MA0870.1	28	0	+	0	0	.
chr9	104514689	104514690	chr9:104514690:C:T	rs1851714	C	T	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	104777070	104777071	chr9:104777071:T:C	rs2482430	T	C	C	Sox1_MA0870.1	13	1	+	8.873505765421472	6.695850467970477	AATAATACCATTGTC
chr9	104875024	104875025	chr9:104875025:A:G	rs59237458	A	G	g	Sox1_MA0870.1	11	1	-	5.3780861376555364	0.42269115184520256	AAAACTGCCATTGTC
chr9	104882269	104882270	chr9:104882270:C:T	rs79252500	C	T	C	Sox1_MA0870.1	27	0	+	0	0	.
chr9	104912746	104912747	chr9:104912747:G:C	rs11792330	G	C	G	Sox1_MA0870.1	33	0	+	0	0	.
chr9	104931263	104931264	chr9:104931264:G:A	rs7866586	G	A	G	Sox1_MA0870.1	24	0	+	0	0	.
chr9	105132055	105132056	chr9:105132056:A:G	rs66488152	A	G	a	Sox1_MA0870.1	-12	0	-	0	0	.
chr9	105169578	105169579	chr9:105169579:A:C	rs73506426	A	C	A	Sox1_MA0870.1	20	0	+	0	0	.
chr9	105276131	105276132	chr9:105276132:G:A	rs328010	G	A	G	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	105277766	105277767	chr9:105277767:A:G	rs12686574	A	G	A	Sox1_MA0870.1	28	0	-	0	0	.
chr9	105652163	105652164	chr9:105652164:G:A	rs551015	G	A	G	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	105757746	105757747	chr9:105757747:C:T	rs7026968	C	T	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	106309918	106309919	chr9:106309919:A:G	rs1507077	A	G	G	Sox1_MA0870.1	-20	0	-	0	0	.
chr9	106643655	106643656	chr9:106643656:G:C	rs57849724	G	C	G	Sox1_MA0870.1	18	0	+	0	0	.
chr9	106732216	106732217	chr9:106732217:T:C	rs2498857	T	C	T	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	107046977	107046978	chr9:107046978:G:A	rs6477555	G	A	A	Sox1_MA0870.1	12	1	+	7.474339991517219	0.565585212201999	AACAACAACATTGAT
chr9	107246457	107246458	chr9:107246458:G:A	rs36116755	G	A	G	Sox1_MA0870.1	8	1	-	8.711393418171689	4.5297838715344065	TCCAATTCCATTGTA
chr9	107270216	107270217	chr9:107270217:G:T	rs12345455	G	T	T	Sox1_MA0870.1	12	1	+	10.600363823141286	3.691609043826066	AACAATATCATCGTG
chr9	107614372	107614373	chr9:107614373:T:C	rs7869457	T	C	C	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	107645670	107645671	chr9:107645671:G:C	rs940291	G	C	G	Sox1_MA0870.1	-16	0	-	0	0	.
chr9	107708350	107708351	chr9:107708351:G:A	rs10979021	G	A	G	Sox1_MA0870.1	17	0	-	0	0	.
chr9	107751067	107751068	chr9:107751068:T:C	rs77966123	T	C	T	Sox1_MA0870.1	5	1	+	7.203124025364547	0.29995926671678863	AAGAATTGCAGTGTT
chr9	108185711	108185712	chr9:108185712:C:T	rs10816641	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	108185742	108185743	chr9:108185743:C:G	rs864145	C	G	C	Sox1_MA0870.1	14	1	+	5.6147586113879004	5.400085928151201	AACAAAGGCATTGGC
chr9	108656926	108656927	chr9:108656927:T:G	rs28372166	T	G	T	Sox1_MA0870.1	10	1	+	5.579754899069721	3.3386299705061613	GACACTGGCATTCTT
chr9	108693184	108693185	chr9:108693185:G:A	rs72753987	G	A	G	Sox1_MA0870.1	16	0	+	0	0	.
chr9	108968226	108968227	chr9:108968227:A:T	rs74872150	A	T	A	Sox1_MA0870.1	24	0	+	0	0	.
chr9	109036044	109036045	chr9:109036045:C:A	rs6477686	C	A	A	Sox1_MA0870.1	0	1	-	4.893564980198373	4.297014017302666	GAAAATAGTATTGTT
chr9	109036058	109036059	chr9:109036059:T:C	rs72760315	T	C	T	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	109037999	109038000	chr9:109038000:T:G	rs763011310	T	G	T	Sox1_MA0870.1	0	1	+	4.663509018751704	5.260059981647412	TACAATATGGTTGTT
chr9	109183927	109183928	chr9:109183928:C:T	rs10979734	C	T	C	Sox1_MA0870.1	-15	0	+	0	0	.
chr9	109318706	109318707	chr9:109318707:A:G	rs72746939	A	G	A	Sox1_MA0870.1	1	1	+	4.0366977432687285	-0.0615929121244122	AACAGTAACATTTTT
chr9	109424051	109424052	chr9:109424052:A:T	rs10816809	A	T	A	Sox1_MA0870.1	1	1	+	6.974902017744462	3.697617770583322	CACACTGCCAGTGAT
chr9	109444741	109444742	chr9:109444742:T:C	rs59705917	T	C	T	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	109470322	109470323	chr9:109470323:T:G	rs7020624	T	G	T	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	109574485	109574486	chr9:109574486:A:G	chr9:109574486:A:G	A	G	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	109574513	109574514	chr9:109574514:T:C	rs145866260	T	C	T	Sox1_MA0870.1	10	1	+	9.960956389415518	3.152259305279186	AACAATTCTATTGCT
chr9	109604354	109604355	chr9:109604355:G:A	rs4978839	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	109604826	109604827	chr9:109604827:G:A	rs10119049	G	A	G	Sox1_MA0870.1	10	1	+	3.419593937756879	-1.147978217815894	AACAATAACTGTGGC
chr9	109755120	109755121	chr9:109755121:C:T	rs79575115	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr9	109774148	109774149	chr9:109774149:G:A	rs7022209	G	A	A	Sox1_MA0870.1	-10	0	-	0	0	.
chr9	110191708	110191709	chr9:110191709:C:T	rs76360042	C	T	C	Sox1_MA0870.1	8	1	+	11.335883030062822	7.154273483425542	AACAATGCCAGTGCT
chr9	110252439	110252440	chr9:110252440:A:G	rs4135189	A	G	A	Sox1_MA0870.1	4	1	+	3.359210459344136	-3.418367794826053	AACTATACCCTTGTC
chr9	110252446	110252447	chr9:110252447:T:C	rs4135188	T	C	T	Sox1_MA0870.1	11	1	+	3.359210459344136	-1.5961845264661978	AACTATACCCTTGTC
chr9	110370359	110370360	chr9:110370360:C:A	rs10980348	C	A	.	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	110450994	110450995	chr9:110450995:G:C	rs72746759	G	C	G	Sox1_MA0870.1	31	0	+	0	0	.
chr9	110526642	110526643	chr9:110526643:C:T	rs143660930	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	110536542	110536543	chr9:110536543:A:G	rs7860069	A	G	C	Sox1_MA0870.1	9	1	+	4.129282983136987	-2.779471796178235	CACAATTGCATTTCA
chr9	110578221	110578222	chr9:110578222:T:C	rs74404084	T	C	T	Sox1_MA0870.1	-10	0	-	0	0	.
chr9	110623355	110623356	chr9:110623356:A:G	rs7028039	A	G	G	Sox1_MA0870.1	24	0	+	0	0	.
chr9	110820391	110820392	chr9:110820392:A:C	rs12553421	A	C	A	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	110928577	110928578	chr9:110928578:A:G	rs116985942	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr9	111075524	111075525	chr9:111075525:G:A	rs10980729	G	A	G	Sox1_MA0870.1	31	0	-	0	0	.
chr9	111475319	111475320	chr9:111475320:C:T	rs12238412	C	T	C	Sox1_MA0870.1	10	1	-	6.937318002920708	2.369745847347935	GTCACTGCCAGTGTT
chr9	111566415	111566416	chr9:111566416:G:A	rs181624788	G	A	G	Sox1_MA0870.1	-13	0	-	0	0	.
chr9	111622774	111622775	chr9:111622775:G:A	rs10759503	G	A	g	Sox1_MA0870.1	20	0	-	0	0	.
chr9	111898023	111898024	chr9:111898024:G:T	rs139622009	G	T	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	111909454	111909455	chr9:111909455:A:G	rs62573863	A	G	G	Sox1_MA0870.1	18	0	+	0	0	.
chr9	111995065	111995066	chr9:111995066:A:C	rs2805484	A	C	C	Sox1_MA0870.1	19	0	-	0	0	.
chr9	112047821	112047822	chr9:112047822:A:G	rs10981228	A	G	A	Sox1_MA0870.1	24	0	+	0	0	.
chr9	112194266	112194267	chr9:112194267:A:G	rs10125519	A	G	A	Sox1_MA0870.1	32	0	+	0	0	.
chr9	112400786	112400787	chr9:112400787:A:G	rs4978488	A	G	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr9	112437544	112437545	chr9:112437545:G:A	rs7866567	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr9	112546158	112546159	chr9:112546159:C:T	rs7847821	C	T	C	Sox1_MA0870.1	29	0	-	0	0	.
chr9	112565455	112565456	chr9:112565456:C:T	rs72764191	C	T	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	112824199	112824200	chr9:112824200:T:G	rs17743418	T	G	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	112862391	112862392	chr9:112862392:G:A	rs543165809	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr9	112867968	112867969	chr9:112867969:C:T	rs4979174	C	T	C	Sox1_MA0870.1	7	1	-	5.5690307620779755	5.966009089874483	CACTCTGGCATTGTC
chr9	113058238	113058239	chr9:113058239:G:A	rs72756132	G	A	g	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	113090771	113090772	chr9:113090772:G:C	rs151186194	G	C	-	Sox1_MA0870.1	18	0	-	0	0	.
chr9	113090803	113090804	chr9:113090804:G:T	rs72500654	G	T	-	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	113153974	113153975	chr9:113153975:A:G	rs7856379	A	G	G	Sox1_MA0870.1	5	1	-	10.410697733883314	3.5075329752355557	AACAATAACAGTGAG
chr9	113233763	113233764	chr9:113233764:T:C	rs10759631	T	C	T	Sox1_MA0870.1	23	0	+	0	0	.
chr9	113313516	113313517	chr9:113313517:T:C	rs10817477	T	C	T	Sox1_MA0870.1	25	0	-	0	0	.
chr9	113615263	113615264	chr9:113615264:T:C	rs79222753	T	C	T	Sox1_MA0870.1	9	1	-	5.465976781292003	-1.4427779980232183	AACACAGGCATTGAT
chr9	113986108	113986109	chr9:113986109:A:G	rs148054353	A	G	A	Sox1_MA0870.1	10	1	-	4.664151871100621	-2.144545213035711	ACCACGACCATTGTT
chr9	113990567	113990568	chr9:113990568:C:G	rs74671845	C	G	C	Sox1_MA0870.1	30	0	+	0	0	.
chr9	114015728	114015729	chr9:114015729:T:C	rs10759677	T	C	T	Sox1_MA0870.1	-4	0	+	0	0	.
chr9	114015738	114015739	chr9:114015739:T:C	rs4979323	T	C	C	Sox1_MA0870.1	6	1	+	7.988685692337684	3.5725354052187828	AACAATTTCAATGTC
chr9	114125786	114125787	chr9:114125787:C:T	rs2217541	C	T	C	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	114134932	114134933	chr9:114134933:C:A	rs891720	C	A	C	Sox1_MA0870.1	4	1	+	3.487846503281693	5.44465943790691	AACACTTCCAGTCTG
chr9	114225988	114225989	chr9:114225989:C:T	rs7028958	C	T	C	Sox1_MA0870.1	16	0	+	0	0	.
chr9	114278178	114278179	chr9:114278179:G:A	rs112446757	G	A	G	Sox1_MA0870.1	22	0	-	0	0	.
chr9	114434990	114434991	chr9:114434991:C:A	chr9:114434991:C:A	C	A	C	Sox1_MA0870.1	3	1	+	3.9622171227254084	9.047982047763584	GACCAGACCATTGTT
chr9	114485306	114485307	chr9:114485307:A:T	rs10817625	A	T	A	Sox1_MA0870.1	20	0	-	0	0	.
chr9	114512713	114512714	chr9:114512714:C:T	rs1408525	C	T	C	Sox1_MA0870.1	22	0	-	0	0	.
chr9	114512731	114512732	chr9:114512732:G:A	rs998547	G	A	G	Sox1_MA0870.1	4	1	-	3.595905845978914	-1.224859473566057	GACTCTGCCATTGAT
chr9	114583081	114583082	chr9:114583082:T:A	rs7019057	T	A	T	Sox1_MA0870.1	19	0	+	0	0	.
chr9	114644100	114644101	chr9:114644101:A:G	rs2183018	A	G	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	114893656	114893657	chr9:114893657:A:G	rs138262172	A	G	A	Sox1_MA0870.1	18	0	+	0	0	.
chr9	114908383	114908384	chr9:114908384:A:T	rs12337739	A	T	T	Sox1_MA0870.1	9	1	+	4.746526465556075	-2.1622283137591465	CCCACTGGCATTGCA
chr9	114917089	114917090	chr9:114917090:G:C	rs927374	G	C	C	Sox1_MA0870.1	31	0	-	0	0	.
chr9	114924451	114924452	chr9:114924452:A:T	rs10982453	A	T	T	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	115010302	115010303	chr9:115010303:T:A	rs10817699	T	A	-	Sox1_MA0870.1	-8	0	-	0	0	.
chr9	115209875	115209876	chr9:115209876:C:T	rs1335357	C	T	T	Sox1_MA0870.1	-13	0	-	0	0	.
chr9	115296966	115296967	chr9:115296967:C:T	chr9:115296967:C:T	C	T	C	Sox1_MA0870.1	7	1	+	4.984040817552183	4.972211765003809	TACACTACCATGGTC
chr9	115357085	115357086	chr9:115357086:C:T	rs10982705	C	T	T	Sox1_MA0870.1	13	1	+	7.233811156737581	9.411466454188576	AACAATTCCATTACT
chr9	115394240	115394241	chr9:115394241:G:A	rs10817761	G	A	A	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	115553361	115553362	chr9:115553362:C:T	rs12005078	C	T	T	Sox1_MA0870.1	19	0	-	0	0	.
chr9	115596633	115596634	chr9:115596634:G:A	rs7467290	G	A	G	Sox1_MA0870.1	-18	0	-	0	0	.
chr9	115924255	115924256	chr9:115924256:C:T	rs13297992	C	T	C	Sox1_MA0870.1	-16	0	-	0	0	.
chr9	116099820	116099821	chr9:116099821:G:A	rs6415825	G	A	A	Sox1_MA0870.1	-18	0	+	0	0	.
chr9	116156256	116156257	chr9:116156257:A:C	rs10983069	A	C	A	Sox1_MA0870.1	5	1	-	6.654139091002808	-0.24902566764495282	CACACTTACATAGTT
chr9	116404940	116404941	chr9:116404941:C:T	rs1858015	C	T	T	Sox1_MA0870.1	-4	0	-	0	0	.
chr9	116525671	116525672	chr9:116525672:T:C	rs56123339	T	C	T	Sox1_MA0870.1	5	1	+	4.715412036411992	-2.187752722235768	TTCAATAGCAGTGGC
chr9	116567241	116567242	chr9:116567242:A:C	rs1467553	A	C	C	Sox1_MA0870.1	19	0	+	0	0	.
chr9	116727525	116727526	chr9:116727526:G:A	rs12554458	G	A	G	Sox1_MA0870.1	25	0	+	0	0	.
chr9	116728058	116728059	chr9:116728059:G:A	rs10983328	G	A	G	Sox1_MA0870.1	-11	0	-	0	0	.
chr9	116826109	116826110	chr9:116826110:G:A	rs10817940	G	A	G	Sox1_MA0870.1	-20	0	+	0	0	.
chr9	116959464	116959465	chr9:116959465:G:C	rs10123636	G	C	G	Sox1_MA0870.1	4	1	-	5.757864933582657	0.9370996140376848	GACCCTTCCATTGCT
chr9	116975358	116975359	chr9:116975359:G:A	rs1331087441	G	A	G	Sox1_MA0870.1	2	1	-	5.200205198101143	-1.7085495812140783	AACTCTTACATTGCA
chr9	117135087	117135088	chr9:117135088:G:C	rs78024663	G	C	G	Sox1_MA0870.1	16	0	+	0	0	.
chr9	117549259	117549260	chr9:117549260:G:A	rs35904208	G	A	G	Sox1_MA0870.1	-19	0	+	0	0	.
chr9	117823887	117823888	chr9:117823888:G:A	rs34256730	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	117938060	117938061	chr9:117938061:G:A	rs492121	G	A	A	Sox1_MA0870.1	2	1	-	5.10509889883612	-1.8036558804791025	TACAATAAGCTTGTT
chr9	118170198	118170199	chr9:118170199:T:C	rs544015562	T	C	T	Sox1_MA0870.1	5	1	+	7.564165122354252	0.6610003637064925	GACAATAGCCTTGTC
chr9	118303404	118303405	chr9:118303405:C:T	rs10739515	C	T	T	Sox1_MA0870.1	-2	0	-	0	0	.
chr9	118363467	118363468	chr9:118363468:T:C	rs10429475	T	C	C	Sox1_MA0870.1	24	0	+	0	0	.
chr9	118529465	118529466	chr9:118529466:G:A	rs7037164	G	A	A	Sox1_MA0870.1	17	0	+	0	0	.
chr9	118570643	118570644	chr9:118570644:T:G	rs7874294	T	G	G	Sox1_MA0870.1	-1	0	-	0	0	.
chr9	119526827	119526828	chr9:119526828:T:C	rs1009471	T	C	C	Sox1_MA0870.1	31	0	+	0	0	.
chr9	119588414	119588415	chr9:119588415:G:A	rs12000630	G	A	A	Sox1_MA0870.1	29	0	-	0	0	.
chr9	119736447	119736448	chr9:119736448:T:C	rs16908885	T	C	T	Sox1_MA0870.1	10	1	+	3.5141329109946495	-3.2945641731416835	AATAAGAGCATTGTT
chr9	119862467	119862468	chr9:119862468:A:C	rs76705546	A	C	A	Sox1_MA0870.1	21	0	-	0	0	.
chr9	119862478	119862479	chr9:119862479:A:G	rs1360690	A	G	A	Sox1_MA0870.1	10	1	-	3.5668291252656843	-3.2418679588706474	AACCAGATCATTGTG
chr9	119998456	119998457	chr9:119998457:C:T	rs10119706	C	T	C	Sox1_MA0870.1	33	0	-	0	0	.
chr9	120026067	120026068	chr9:120026068:A:T	rs7856836	A	T	A	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	120583721	120583722	chr9:120583722:C:G	rs74939255	C	G	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	120650531	120650532	chr9:120650532:A:T	rs144177743	A	T	A	Sox1_MA0870.1	4	1	+	7.751341424296911	0.9737631701267226	CACAAAGACATTGCT
chr9	120853462	120853463	chr9:120853463:G:A	rs34674181	G	A	A	Sox1_MA0870.1	8	1	-	9.405227422307663	5.2236178756703815	AACAACTTCATTGTT
chr9	120865943	120865944	chr9:120865944:G:A	rs41273394	G	A	G	Sox1_MA0870.1	14	1	-	5.722801752256176	7.233811156737581	AACAATTCCATTTCC
chr9	120893050	120893051	chr9:120893051:T:C	rs6478486	T	C	T	Sox1_MA0870.1	11	1	+	4.620329120533809	-0.3350658652765254	GACAATCTCAGTGCC
chr9	120894048	120894049	chr9:120894049:T:C	rs7037140	T	C	C	Sox1_MA0870.1	30	0	-	0	0	.
chr9	120936106	120936107	chr9:120936107:A:G	rs116533358	A	G	A	Sox1_MA0870.1	9	1	+	7.258110965648303	0.34935618633308263	CACAAAGCCAGTGTT
chr9	120946385	120946386	chr9:120946386:T:A	rs10818489	T	A	T	Sox1_MA0870.1	-19	0	+	0	0	.
chr9	121454111	121454112	chr9:121454112:G:C	rs10818538	G	C	G	Sox1_MA0870.1	22	0	+	0	0	.
chr9	121670438	121670439	chr9:121670439:G:A	rs62572790	G	A	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	121725289	121725290	chr9:121725290:G:A	rs778069876	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr9	121808019	121808020	chr9:121808020:G:C	rs140097197	G	C	G	Sox1_MA0870.1	23	0	+	0	0	.
chr9	121841984	121841985	chr9:121841985:A:G	rs12348475	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr9	121915086	121915087	chr9:121915087:A:G	rs1018997565	A	G	A	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	121993984	121993985	chr9:121993985:G:A	rs4836872	G	A	A	Sox1_MA0870.1	19	0	+	0	0	.
chr9	122186766	122186767	chr9:122186767:A:G	rs2039197	A	G	G	Sox1_MA0870.1	17	0	-	0	0	.
chr9	122215341	122215342	chr9:122215342:G:A	rs4837949	G	A	A	Sox1_MA0870.1	31	0	-	0	0	.
chr9	122385252	122385253	chr9:122385253:T:C	rs9299279	T	C	C	Sox1_MA0870.1	18	0	-	0	0	.
chr9	122567904	122567905	chr9:122567905:A:C	rs10985702	A	C	A	Sox1_MA0870.1	24	0	+	0	0	.
chr9	122898252	122898253	chr9:122898253:C:G	rs10985809	C	G	C	Sox1_MA0870.1	14	1	+	5.299721704643986	5.085049021407286	AACAAAAAAATTGTC
chr9	122949816	122949817	chr9:122949817:T:A	rs28592199	T	A	T	Sox1_MA0870.1	11	1	+	5.493541927574911	-1.409190759281922	GACAATAACACTGCA
chr9	123525122	123525123	chr9:123525123:G:A	rs117436484	G	A	g	Sox1_MA0870.1	25	0	-	0	0	.
chr9	123525124	123525125	chr9:123525125:G:A	rs61655407	G	A	G	Sox1_MA0870.1	23	0	-	0	0	.
chr9	123525136	123525137	chr9:123525137:A:G	rs2772213	A	G	A	Sox1_MA0870.1	11	1	-	5.915802186620327	0.9604072008099936	CTCACTTGCAGTGTG
chr9	123544010	123544011	chr9:123544011:A:C	rs12335550	A	C	A	Sox1_MA0870.1	-20	0	+	0	0	.
chr9	123757788	123757789	chr9:123757789:T:C	rs9785285	T	C	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	124174633	124174634	chr9:124174634:G:T	rs10986262	G	T	G	Sox1_MA0870.1	24	0	-	0	0	.
chr9	124863676	124863677	chr9:124863677:A:C	rs76458638	A	C	A	Sox1_MA0870.1	33	0	+	0	0	.
chr9	125053867	125053868	chr9:125053868:T:C	rs600310	T	C	T	Sox1_MA0870.1	11	1	-	7.324878462131371	7.324878462131371	AACACTGACATAGTT
chr9	125932005	125932006	chr9:125932006:C:T	rs147911174	C	T	C	Sox1_MA0870.1	30	0	+	0	0	.
chr9	125964890	125964891	chr9:125964891:C:T	rs3793622	C	T	C	Sox1_MA0870.1	4	1	+	4.263001148757975	-0.5577641707869966	CACCCTGACATTGGT
chr9	125977735	125977736	chr9:125977736:A:G	rs2111363	A	G	A	Sox1_MA0870.1	5	1	-	3.7302493629194706	-3.172915395728288	AACACTGACAATGCC
chr9	126001633	126001634	chr9:126001634:T:C	rs139310645	T	C	T	Sox1_MA0870.1	26	0	+	0	0	.
chr9	126066271	126066272	chr9:126066272:T:A	rs12552810	T	A	A	Sox1_MA0870.1	9	1	-	2.895405457296257	-4.013349322018963	CCCACTGGCAGTGCC
chr9	126066283	126066284	chr9:126066284:G:C	rs78088457	G	C	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	126123066	126123067	chr9:126123067:A:T	rs7035212	A	T	A	Sox1_MA0870.1	31	0	-	0	0	.
chr9	126425119	126425120	chr9:126425120:A:G	rs7018672	A	G	-	Sox1_MA0870.1	9	1	+	7.940213956939469	1.031459177624248	AACAATTACATTCTA
chr9	126716628	126716629	chr9:126716629:C:T	rs10760452	C	T	T	Sox1_MA0870.1	24	0	+	0	0	.
chr9	126914425	126914426	chr9:126914426:G:A	rs117608974	G	A	G	Sox1_MA0870.1	-13	0	+	0	0	.
chr9	126938125	126938126	chr9:126938126:C:G	rs546493	C	G	G	Sox1_MA0870.1	20	0	-	0	0	.
chr9	126965732	126965733	chr9:126965733:T:A	rs10819257	T	A	T	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	127108538	127108539	chr9:127108539:C:T	rs535557834	C	T	C	Sox1_MA0870.1	27	0	-	0	0	.
chr9	127165191	127165192	chr9:127165192:A:T	rs78737030	A	T	A	Sox1_MA0870.1	9	1	+	4.316747999093161	-2.5920067802220585	AACTCTGCCAGTGTG
chr9	127389304	127389305	chr9:127389305:T:C	rs45526734	T	C	t	Sox1_MA0870.1	4	1	-	3.569579053885631	-3.207999200284558	AACAACATCACTGTT
chr9	127454770	127454771	chr9:127454771:C:G	rs2243509	C	G	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	127614007	127614008	chr9:127614008:T:C	rs10819302	T	C	T	Sox1_MA0870.1	10	1	+	5.547401162897299	-1.2612959212390347	AACACCTTCATTGTA
chr9	127769984	127769985	chr9:127769985:T:C	rs117929733	T	C	T	Sox1_MA0870.1	11	1	+	11.011291074415377	6.055896088605044	GACAATTCCAGTGTG
chr9	127976450	127976451	chr9:127976451:C:T	rs13302576	C	T	C	Sox1_MA0870.1	-7	0	-	0	0	.
chr9	127983747	127983748	chr9:127983748:A:G	rs143041339	A	G	A	Sox1_MA0870.1	-18	0	-	0	0	.
chr9	128021570	128021571	chr9:128021571:G:A	rs76010425	G	A	G	Sox1_MA0870.1	8	1	-	3.3831447865520325	-0.7984647600852487	GCCAAAGCCAGTGTT
chr9	128306395	128306396	chr9:128306396:A:G	rs7865290	A	G	G	Sox1_MA0870.1	9	1	+	4.442768855940046	-2.4659859233751744	CACCATTTCATTGGA
chr9	128385825	128385826	chr9:128385826:G:A	rs113630620	G	A	G	Sox1_MA0870.1	20	0	+	0	0	.
chr9	128898607	128898608	chr9:128898608:T:C	rs941959	T	C	T	Sox1_MA0870.1	17	0	-	0	0	.
chr9	128935346	128935347	chr9:128935347:G:A	rs12005404	G	A	G	Sox1_MA0870.1	15	0	+	0	0	.
chr9	128996047	128996048	chr9:128996048:G:A	chr9:128996048:G:A	G	A	G	Sox1_MA0870.1	-2	0	+	0	0	.
chr9	129214999	129215000	chr9:129215000:G:A	rs10988250	G	A	g	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	129260295	129260296	chr9:129260296:C:A	rs1556145	C	A	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	129427202	129427203	chr9:129427203:G:T	rs79385872	G	T	g	Sox1_MA0870.1	29	0	+	0	0	.
chr9	129533340	129533341	chr9:129533341:A:G	rs1613345	A	G	g	Sox1_MA0870.1	21	0	-	0	0	.
chr9	129703527	129703528	chr9:129703528:T:G	rs4836668	T	G	G	Sox1_MA0870.1	14	1	+	4.669675918829921	2.943993831111818	ATCACTGGCAGTGGT
chr9	129892320	129892321	chr9:129892321:A:G	rs1226029141	A	G	A	Sox1_MA0870.1	-13	0	-	0	0	.
chr9	129934937	129934938	chr9:129934938:A:G	rs376800546	A	G	A	Sox1_MA0870.1	25	0	+	0	0	.
chr9	130106924	130106925	chr9:130106925:C:T	rs11788668	C	T	C	Sox1_MA0870.1	18	0	-	0	0	.
chr9	130254620	130254621	chr9:130254621:C:T	rs10819622	C	T	C	Sox1_MA0870.1	28	0	+	0	0	.
chr9	130267598	130267599	chr9:130267599:C:A	rs10819627	C	A	C	Sox1_MA0870.1	7	1	+	5.069549199111753	5.499310026647795	CACAATACCATTACA
chr9	130276441	130276442	chr9:130276442:A:G	rs9657643	A	G	a	Sox1_MA0870.1	23	0	-	0	0	.
chr9	130282174	130282175	chr9:130282175:C:T	rs118004427	C	T	C	Sox1_MA0870.1	-20	0	-	0	0	.
chr9	130291174	130291175	chr9:130291175:C:T	rs4837491	C	T	T	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	130411635	130411636	chr9:130411636:T:C	rs11790911	T	C	-	Sox1_MA0870.1	9	1	-	4.129282983136986	-2.779471796178235	CAGAATTGCATTGCA
chr9	130483268	130483269	chr9:130483269:G:T	rs10901080	G	T	G	Sox1_MA0870.1	-9	0	-	0	0	.
chr9	130555704	130555705	chr9:130555705:G:A	rs878346	G	A	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	130738689	130738690	chr9:130738690:T:C	rs2583844	T	C	T	Sox1_MA0870.1	14	1	+	4.3862877371124815	2.875278332631077	ATCAATTACCTTGCT
chr9	131076636	131076637	chr9:131076637:A:G	rs928674	A	G	G	Sox1_MA0870.1	-6	0	-	0	0	.
chr9	131256816	131256817	chr9:131256817:C:T	rs1213752525	C	T	c	Sox1_MA0870.1	-19	0	-	0	0	.
chr9	131353083	131353084	chr9:131353084:C:A	rs11243362	C	A	C	Sox1_MA0870.1	-16	0	+	0	0	.
chr9	131518374	131518375	chr9:131518375:C:T	rs113628769	C	T	C	Sox1_MA0870.1	21	0	+	0	0	.
chr9	131833318	131833319	chr9:131833319:C:T	rs943837	C	T	C	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	131916532	131916533	chr9:131916533:G:C	rs12555726	G	C	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr9	132250479	132250480	chr9:132250480:C:G	rs144674862	C	G	C	Sox1_MA0870.1	17	0	-	0	0	.
chr9	132579614	132579615	chr9:132579615:G:C	rs431195	G	C	C	Sox1_MA0870.1	27	0	-	0	0	.
chr9	132673853	132673854	chr9:132673854:A:C	rs755729	A	C	A	Sox1_MA0870.1	29	0	-	0	0	.
chr9	132793840	132793841	chr9:132793841:T:C	rs1410969	T	C	t	Sox1_MA0870.1	34	0	+	0	0	.
chr9	132857196	132857197	chr9:132857197:G:C	rs73549201	G	C	G	Sox1_MA0870.1	24	0	+	0	0	.
chr9	133008162	133008163	chr9:133008163:C:A	rs2773815	C	A	C	Sox1_MA0870.1	28	0	-	0	0	.
chr9	133008175	133008176	chr9:133008176:G:A	rs8193012	G	A	-	Sox1_MA0870.1	15	0	-	0	0	.
chr9	133008193	133008194	chr9:133008194:G:A	rs8193013	G	A	G	Sox1_MA0870.1	-3	0	-	0	0	.
chr9	133102499	133102500	chr9:133102500:G:A	rs143632195	G	A	G	Sox1_MA0870.1	4	1	-	7.267710903660223	2.446945584115251	AACACAGCCATTGTC
chr9	133122510	133122511	chr9:133122511:C:T	rs35528861	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	133257464	133257465	chr9:133257465:G:A	rs8176721	G	A	g	Sox1_MA0870.1	-19	0	-	0	0	.
chr9	133259145	133259146	chr9:133259146:T:A	rs8176710	T	A	t	Sox1_MA0870.1	-8	0	+	0	0	.
chr9	133416804	133416805	chr9:133416805:G:A	rs3124780	G	A	A	Sox1_MA0870.1	27	0	-	0	0	.
chr9	133416845	133416846	chr9:133416846:G:A	rs3124779	G	A	A	Sox1_MA0870.1	-14	0	-	0	0	.
chr9	133647152	133647153	chr9:133647153:T:C	rs2519154	T	C	T	Sox1_MA0870.1	1	1	-	5.225556145184262	1.1272654897911205	AACAATTTGAGTGAG
chr9	133752682	133752683	chr9:133752683:A:T	rs495817	A	T	T	Sox1_MA0870.1	29	0	+	0	0	.
chr9	134219299	134219300	chr9:134219300:G:A	rs11185665	G	A	G	Sox1_MA0870.1	-1	0	+	0	0	.
chr9	134379530	134379531	chr9:134379531:G:A	rs373210159	G	A	G	Sox1_MA0870.1	-2	0	-	0	0	.
chr9	134493801	134493802	chr9:134493802:T:C	rs12349921	T	C	C	Sox1_MA0870.1	-7	0	+	0	0	.
chr9	134708620	134708621	chr9:134708621:C:T	rs55960630	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr9	134872800	134872801	chr9:134872801:G:A	rs7873805	G	A	G	Sox1_MA0870.1	-16	0	+	0	0	.
chr9	134872813	134872814	chr9:134872814:C:T	rs113527459	C	T	C	Sox1_MA0870.1	-3	0	+	0	0	.
chr9	134917114	134917115	chr9:134917115:C:A	rs12377780	C	A	C	Sox1_MA0870.1	23	0	-	0	0	.
chr9	135046004	135046005	chr9:135046005:T:C	rs10858322	T	C	C	Sox1_MA0870.1	-5	0	-	0	0	.
chr9	135248051	135248052	chr9:135248052:C:T	rs149979906	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	135326591	135326592	chr9:135326592:C:T	rs72764604	C	T	c	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	135485586	135485587	chr9:135485587:G:A	rs3827827	G	A	G	Sox1_MA0870.1	30	0	-	0	0	.
chr9	135580144	135580145	chr9:135580145:T:C	rs7848523	T	C	-	Sox1_MA0870.1	6	1	-	8.156863099210184	6.618256406069465	AACACTAACAGTGGG
chr9	135689165	135689166	chr9:135689166:T:C	rs62579818	T	C	t	Sox1_MA0870.1	20	0	+	0	0	.
chr9	135882310	135882311	chr9:135882311:C:T	rs17038736	C	T	C	Sox1_MA0870.1	-17	0	+	0	0	.
chr9	135946293	135946294	chr9:135946294:T:C	rs7028495	T	C	C	Sox1_MA0870.1	11	1	+	5.432855527131321	0.4774605413209865	AACAATTCCACTGCA
chr9	135974989	135974990	chr9:135974990:C:T	rs11789650	C	T	C	Sox1_MA0870.1	32	0	+	0	0	.
chr9	135990550	135990551	chr9:135990551:G:A	rs111728330	G	A	G	Sox1_MA0870.1	24	0	-	0	0	.
chr9	136021942	136021943	chr9:136021943:C:T	rs4842076	C	T	T	Sox1_MA0870.1	34	0	+	0	0	.
chr9	136113125	136113126	chr9:136113126:A:G	rs1630725	A	G	G	Sox1_MA0870.1	-14	0	+	0	0	.
chr9	136304681	136304682	chr9:136304682:C:T	rs973607508	C	T	C	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	136363055	136363056	chr9:136363056:G:A	rs145299967	G	A	G	Sox1_MA0870.1	-15	0	-	0	0	.
chr9	136363059	136363060	chr9:136363060:G:T	rs145144911	G	T	G	Sox1_MA0870.1	-19	0	-	0	0	.
chr9	136632334	136632335	chr9:136632335:T:C	rs7046944	T	C	-	Sox1_MA0870.1	9	1	-	3.283294281226507	-3.625460498088713	CACTCTGTCAGTGTC
chr9	136940325	136940326	chr9:136940326:T:A	rs562086198	T	A	T	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	137225431	137225432	chr9:137225432:A:G	rs6606567	A	G	G	Sox1_MA0870.1	-6	0	+	0	0	.
chr9	137638925	137638926	chr9:137638926:C:G	rs11137163	C	G	C	Sox1_MA0870.1	-11	0	+	0	0	.
chr9	137967715	137967716	chr9:137967716:T:C	rs7860115	T	C	T	Sox1_MA0870.1	-20	0	-	0	0	.