chr1	1119171	1119172	chr1:1119172:G:A	rs12567697	G	A	g	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	1208442	1208443	chr1:1208443:G:A	rs190498570	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	1538786	1538787	chr1:1538787:A:G	rs1571149	A	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	1641228	1641229	chr1:1641229:C:G	rs192475345	C	G	c	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	1851761	1851762	chr1:1851762:G:A	rs12402876	G	A	g	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	2151126	2151127	chr1:2151127:T:C	rs2257182	T	C	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr1	2358040	2358041	chr1:2358041:A:G	rs903915	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.345367688132999	-2.5304014449912815	TGAAAATCCATGCA
chr1	2441418	2441419	chr1:2441419:T:C	rs2494425	T	C	C	Sox1.mouse_HMG_4	9	1	-	4.084962199587464	0.720141312084456	TGAATGAACATCCC
chr1	2466309	2466310	chr1:2466310:G:A	rs72845402	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	2895248	2895249	chr1:2895249:G:A	rs1456465	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	2959959	2959960	chr1:2959960:T:C	rs10909845	T	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	3290082	3290083	chr1:3290083:G:T	rs56195320	G	T	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	3324551	3324552	chr1:3324552:G:A	rs57675406	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	3337274	3337275	chr1:3337275:C:G	rs7516137	C	G	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	3368739	3368740	chr1:3368740:T:C	rs4648487	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	3660997	3660998	chr1:3660998:A:G	rs12117522	A	G	A	Sox1.mouse_HMG_4	5	1	+	7.657826315161359	7.21604709255602	TGAATATATATCCA
chr1	3678191	3678192	chr1:3678192:A:T	rs2368542	A	T	t	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	3679350	3679351	chr1:3679351:G:A	rs115303734	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	4346037	4346038	chr1:4346038:A:G	rs472705	A	G	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	4411823	4411824	chr1:4411824:T:C	rs2130620	T	C	T	Sox1.mouse_HMG_4	3	1	-	8.129468753827856	1.2420488440236588	TGAATAAACTTTCA
chr1	4509375	4509376	chr1:4509376:T:A	rs780569	T	A	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	4572467	4572468	chr1:4572468:A:G	rs241211	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	4680963	4680964	chr1:4680964:G:A	rs115464622	G	A	G	Sox1.mouse_HMG_4	6	1	-	4.694821180280669	5.2170347955208465	TGAATTCGAATGCC
chr1	5245303	5245304	chr1:5245304:T:G	rs673451	T	G	T	Sox1.mouse_HMG_4	0	1	+	7.576258449569397	3.978920076797789	TGAATTGATGGTCA
chr1	5265323	5265324	chr1:5265324:A:G	rs34916930	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.300645041819745	0.41322513201554667	TGAATACCCATTCT
chr1	5268534	5268535	chr1:5268535:G:A	rs605572	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr1	5375975	5375976	chr1:5375976:C:T	rs36165769	C	T	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	5465386	5465387	chr1:5465387:A:G	rs6672325	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	5503338	5503339	chr1:5503339:G:A	rs9659669	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	5514467	5514468	chr1:5514468:G:A	rs1032417539	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	5551668	5551669	chr1:5551669:A:C	rs2211417	A	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	5598357	5598358	chr1:5598358:C:T	chr1:5598358:C:T	C	T	C	Sox1.mouse_HMG_4	5	1	-	7.4215125657932095	7.86329178839855	TGAACGCCCATTCC
chr1	5598358	5598359	chr1:5598359:G:A	rs12139270	G	A	G	Sox1.mouse_HMG_4	4	1	-	7.4215125657932095	10.143529384620608	TGAACGCCCATTCC
chr1	5622862	5622863	chr1:5622863:G:A	rs999413	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	5624727	5624728	chr1:5624728:G:A	rs12145625	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	5731861	5731862	chr1:5731862:G:A	rs2649058	G	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr1	5840492	5840493	chr1:5840493:T:C	rs9727677	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr1	5846582	5846583	chr1:5846583:T:C	rs495376	T	C	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr1	5927635	5927636	chr1:5927636:T:C	rs7520105	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	5963534	5963535	chr1:5963535:T:C	rs115993009	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	5964044	5964045	chr1:5964045:T:C	rs35357995	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	6267876	6267877	chr1:6267877:G:A	rs114260806	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	6435203	6435204	chr1:6435204:A:T	rs72633466	A	T	-	Sox1.mouse_HMG_4	5	1	-	13.688243525164108	14.328130618640984	TGAATTGAAATTCA
chr1	6721510	6721511	chr1:6721511:C:T	rs277678	C	T	C	Sox1.mouse_HMG_4	10	1	-	5.410438187752942	1.899489942131667	TGACTTCGCAGTCA
chr1	6787502	6787503	chr1:6787503:C:G	rs12047247	C	G	C	Sox1.mouse_HMG_4	6	1	+	6.671089836460435	7.60084954040397	TGAAATCACATTCA
chr1	7110658	7110659	chr1:7110659:A:G	rs17349921	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	7376999	7377000	chr1:7377000:A:G	rs72865635	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	7437346	7437347	chr1:7437347:G:A	rs1193224	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	7581327	7581328	chr1:7581328:G:C	rs873433	G	C	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	7868120	7868121	chr1:7868121:G:A	rs2066980	G	A	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr1	8073291	8073292	chr1:8073292:T:C	rs7539255	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	8307951	8307952	chr1:8307952:A:G	rs12029259	A	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	8370780	8370781	chr1:8370781:T:G	rs74049618	T	G	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	8370813	8370814	chr1:8370814:A:G	rs74049619	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	9062497	9062498	chr1:9062498:A:G	rs1612895	A	G	G	Sox1.mouse_HMG_4	4	1	-	3.9358241543167374	1.2138073354893386	TGAATACCCAGTCT
chr1	9233801	9233802	chr1:9233802:C:T	rs9434725	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.9175478031704145	-1.9912069761448061	TGAAAAATTAGTCA
chr1	9338559	9338560	chr1:9338560:C:T	rs72643830	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr1	9686937	9686938	chr1:9686938:C:A	rs9661903	C	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr1	9851232	9851233	chr1:9851233:A:G	rs2379107	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	10379318	10379319	chr1:10379319:G:C	rs190725532	G	C	G	Sox1.mouse_HMG_4	4	1	-	5.401899359477255	1.2778341958060748	TGAACAGACAGTCC
chr1	10619656	10619657	chr1:10619657:C:T	rs78282029	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	10940276	10940277	chr1:10940277:G:A	rs375931437	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	11295079	11295080	chr1:11295080:T:C	rs41274522	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	11407296	11407297	chr1:11407297:G:T	rs4846002	G	T	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	12121694	12121695	chr1:12121695:G:A	rs116632878	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr1	12136711	12136712	chr1:12136712:G:T	rs816046	G	T	t	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	12408065	12408066	chr1:12408066:C:T	rs34820623	C	T	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	12514732	12514733	chr1:12514733:T:C	rs79744516	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	12530719	12530720	chr1:12530720:C:T	rs10864555	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	12530720	12530721	chr1:12530721:G:A	rs12045649	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	12771655	12771656	chr1:12771656:T:C	rs1009864	T	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	13226322	13226323	chr1:13226323:G:A	rs2359082	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr1	13226354	13226355	chr1:13226355:T:G	rs761823668	T	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	13372163	13372164	chr1:13372164:A:G	rs1204043724	A	G	-	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	13400412	13400413	chr1:13400413:A:G	rs1035804918	A	G	N	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	13575388	13575389	chr1:13575389:T:C	rs12404716	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	13642208	13642209	chr1:13642209:G:A	rs11799571	G	A	g	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	13675623	13675624	chr1:13675624:T:C	rs139071845	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	13724119	13724120	chr1:13724120:T:A	rs77986549	T	A	T	Sox1.mouse_HMG_4	10	1	+	6.28687843951953	-0.5888906936047518	GGAATACAAATGCA
chr1	13976664	13976665	chr1:13976665:A:G	rs2359899	A	G	A	Sox1.mouse_HMG_4	5	1	+	10.406430427531314	9.964651204925977	TGAATATAAATGCA
chr1	14372651	14372652	chr1:14372652:C:A	rs72869042	C	A	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	14405086	14405087	chr1:14405087:C:T	rs1328830	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	14463038	14463039	chr1:14463039:C:T	rs12564154	C	T	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	14891834	14891835	chr1:14891835:C:T	rs1524160	C	T	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	15083540	15083541	chr1:15083541:G:A	rs17372042	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	15459699	15459700	chr1:15459700:A:G	rs4661627	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	15515070	15515071	chr1:15515071:C:A	rs12026303	C	A	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	15850789	15850790	chr1:15850790:A:G	rs10927867	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	15956528	15956529	chr1:15956529:C:T	rs56048916	C	T	T	Sox1.mouse_HMG_4	0	1	-	11.047701021002478	7.780797227123698	GGAATGGACATTCA
chr1	16056470	16056471	chr1:16056471:C:T	rs5255	C	T	c	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr1	16195773	16195774	chr1:16195774:T:C	rs1985166	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	16308427	16308428	chr1:16308428:C:T	rs11583228	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	16489593	16489594	chr1:16489594:C:A	rs140407246	C	A	.	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	16712860	16712861	chr1:16712861:T:G	rs543486917	T	G	.	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	16755580	16755581	chr1:16755581:G:A	rs2476569	G	A	.	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	16960663	16960664	chr1:16960664:C:A	rs142857667	C	A	.	Sox1.mouse_HMG_4	8	1	+	4.279735450364247	3.5210474526258038	TGACCACACAGTCA
chr1	17009823	17009824	chr1:17009824:A:C	rs9435670	A	C	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr1	17190027	17190028	chr1:17190028:A:G	rs2935944	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr1	17190064	17190065	chr1:17190065:T:C	rs149036052	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	17681745	17681746	chr1:17681746:C:T	rs75044419	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	17701058	17701059	chr1:17701059:A:C	rs2354291	A	C	A	Sox1.mouse_HMG_4	4	1	-	6.048169655350246	-0.7979123271483337	TGACTCCAAATTCA
chr1	17857335	17857336	chr1:17857336:T:G	rs752657	T	G	T	Sox1.mouse_HMG_4	13	1	-	4.458758329647267	0.8606767790755017	GGAGTATTCATTCA
chr1	17907616	17907617	chr1:17907617:C:T	rs1953425	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	18026845	18026846	chr1:18026846:A:G	rs115672876	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr1	18069973	18069974	chr1:18069974:G:A	rs11800423	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	18325249	18325250	chr1:18325250:G:C	rs76761585	G	C	G	Sox1.mouse_HMG_4	13	1	-	11.046957843202323	7.762294277796119	TGAATGGACATTCC
chr1	18448198	18448199	chr1:18448199:A:G	rs2946535	A	G	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	18471208	18471209	chr1:18471209:A:G	rs2992736	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	18481125	18481126	chr1:18481126:G:C	rs34109355	G	C	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	18484626	18484627	chr1:18484627:G:A	rs35259167	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	18485821	18485822	chr1:18485822:C:T	rs708088	C	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	18712133	18712134	chr1:18712134:C:T	rs61760724	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.854241630741998	7.576258449569397	TGAACTGATGGTCA
chr1	18712167	18712168	chr1:18712168:C:T	rs61760725	C	T	c	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	18788122	18788123	chr1:18788123:G:A	rs11584720	G	A	G	Sox1.mouse_HMG_4	5	1	-	7.117822468361603	10.03765087849069	TGAATCCCTGTTCA
chr1	18940110	18940111	chr1:18940111:G:C	rs114151258	G	C	g	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	18999739	18999740	chr1:18999740:T:A	rs6669421	T	A	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	19091571	19091572	chr1:19091572:G:A	rs12563949	G	A	G	Sox1.mouse_HMG_4	9	1	+	4.87591574637784	8.240736633880847	TGAAAAGACGTTCA
chr1	19286917	19286918	chr1:19286918:A:G	rs12405546	A	G	a	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	19423181	19423182	chr1:19423182:A:G	rs6686979	A	G	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr1	19423184	19423185	chr1:19423185:T:C	rs6689918	T	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	19963594	19963595	chr1:19963595:C:T	rs12021852	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	20153254	20153255	chr1:20153255:C:T	rs139684181	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	20431285	20431286	chr1:20431286:C:T	rs72969023	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	20431326	20431327	chr1:20431327:T:C	rs55761633	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	20550812	20550813	chr1:20550813:C:T	rs1253787	C	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr1	20569613	20569614	chr1:20569614:T:A	rs10916816	T	A	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	20830173	20830174	chr1:20830174:A:G	rs4654874	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	21005657	21005658	chr1:21005658:A:G	rs79194140	A	G	a	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	21099034	21099035	chr1:21099035:A:G	rs12724752	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr1	21271878	21271879	chr1:21271879:G:A	rs3026866	G	A	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr1	21271883	21271884	chr1:21271884:C:T	rs212549	C	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	21654187	21654188	chr1:21654188:C:T	rs3767126	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	21677172	21677173	chr1:21677173:C:G	rs16825800	C	G	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	21703695	21703696	chr1:21703696:T:C	rs829372	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	21907930	21907931	chr1:21907931:G:C	rs2501253	G	C	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	22241392	22241393	chr1:22241393:C:A	rs12030840	C	A	C	Sox1.mouse_HMG_4	12	1	+	4.871351301232415	-2.0374034780828056	TGAACATCCATGCC
chr1	22281720	22281721	chr1:22281721:G:A	rs61766934	G	A	G	Sox1.mouse_HMG_4	10	1	+	6.055949418164501	2.545001172543227	TGAATGGGAAGGCA
chr1	22377009	22377010	chr1:22377010:G:A	rs115424381	G	A	g	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	22418328	22418329	chr1:22418329:C:T	rs4634875	C	T	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	22585628	22585629	chr1:22585629:T:C	rs79962833	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.118408811082644	-2.7643363048953247	TGATCATGCATTCA
chr1	23284185	23284186	chr1:23284186:T:A	rs594228	T	A	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	23426792	23426793	chr1:23426793:G:A	rs12058300	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	23495011	23495012	chr1:23495012:C:T	rs146600947	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr1	23522853	23522854	chr1:23522854:C:T	rs1555027	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	23554103	23554104	chr1:23554104:G:A	rs192538749	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr1	23559107	23559108	chr1:23559108:T:C	rs2067053	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	23578760	23578761	chr1:23578761:A:G	rs2811947	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	23732585	23732586	chr1:23732586:C:T	rs79404684	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr1	23873151	23873152	chr1:23873152:G:A	rs6663474	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	23878916	23878917	chr1:23878917:G:A	rs2502989	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	24540416	24540417	chr1:24540417:C:T	rs7528038	C	T	C	Sox1.mouse_HMG_4	9	1	-	5.491858018389661	8.856678905892666	TGAACATTCGGTCA
chr1	24966592	24966593	chr1:24966593:T:C	rs7536201	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr1	25175189	25175190	chr1:25175190:A:G	rs35940806	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	25264310	25264311	chr1:25264311:T:G	rs114845124	T	G	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	25338949	25338950	chr1:25338950:C:G	rs3093567	C	G	c	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	25338986	25338987	chr1:25338987:G:A	rs183491127	G	A	g	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	25567229	25567230	chr1:25567230:C:T	rs114902249	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr1	25998509	25998510	chr1:25998510:G:T	rs1297618783	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	25998553	25998554	chr1:25998554:A:C	chr1:25998554:A:C	A	C	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr1	26075531	26075532	chr1:26075532:A:G	rs3008231	A	G	G	Sox1.mouse_HMG_4	2	1	+	4.435432794625045	-2.4733219846901746	TGAATGGTCCTTCC
chr1	26115146	26115147	chr1:26115147:G:A	rs56299762	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr1	26162455	26162456	chr1:26162456:C:T	rs12069762	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.239622170265118	-2.6691326090501017	GGAACACACATTCC
chr1	26702025	26702026	chr1:26702026:G:A	chr1:26702026:G:A	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	26841696	26841697	chr1:26841697:G:C	rs12746395	G	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	27431546	27431547	chr1:27431547:C:T	rs17162627	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	27863475	27863476	chr1:27863476:A:G	rs187803066	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	27956966	27956967	chr1:27956967:G:A	rs4908382	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr1	28037762	28037763	chr1:28037763:T:C	rs525844	T	C	C	Sox1.mouse_HMG_4	13	1	-	7.394874739430976	0.5121296234530064	TGAATTTTCATTAA
chr1	28078182	28078183	chr1:28078183:G:C	rs2147025	G	C	g	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr1	28370570	28370571	chr1:28370571:C:T	rs78234797	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr1	29171373	29171374	chr1:29171374:A:G	rs71642261	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr1	29388815	29388816	chr1:29388816:C:T	rs56178150	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	29466453	29466454	chr1:29466454:C:T	rs116359424	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	29466692	29466693	chr1:29466693:C:A	rs927727	C	A	C	Sox1.mouse_HMG_4	12	1	+	7.477930883671063	0.5691761043558425	TGATTTAACATTCA
chr1	29624446	29624447	chr1:29624447:G:A	rs9283399	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	29748917	29748918	chr1:29748918:A:G	rs10914309	A	G	.	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	29865341	29865342	chr1:29865342:C:T	rs971127	C	T	T	Sox1.mouse_HMG_4	1	1	-	6.842161542665528	-0.06659323664969308	TGAAGTGAAATTCA
chr1	29876152	29876153	chr1:29876153:A:G	rs61320865	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.96678652275907	-1.908982610365211	TGAACATCTTTTCA
chr1	30028290	30028291	chr1:30028291:C:T	rs12732511	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	30152260	30152261	chr1:30152261:T:C	rs55935931	T	C	T	Sox1.mouse_HMG_4	6	1	+	4.0185887487419745	3.4963751335017985	TGAATGTCCAGACA
chr1	30603853	30603854	chr1:30603854:C:G	rs7551073	C	G	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr1	31219187	31219188	chr1:31219188:T:C	rs12755429	T	C	T	Sox1.mouse_HMG_4	3	1	-	10.0909051523925	3.203485242588301	GGAATTGAAATTCA
chr1	31272437	31272438	chr1:31272438:T:C	rs16834327	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	31549709	31549710	chr1:31549710:G:A	rs147022324	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	31674862	31674863	chr1:31674863:C:T	rs746912909	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr1	31674898	31674899	chr1:31674899:A:G	rs111763876	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	32139160	32139161	chr1:32139161:G:A	rs76178726	G	A	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	32394644	32394645	chr1:32394645:G:C	rs1274618268	G	C	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	32394652	32394653	chr1:32394653:C:T	rs116149175	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr1	32813094	32813095	chr1:32813095:C:A	rs75499764	C	A	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	33461444	33461445	chr1:33461445:A:G	rs10914730	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	33548533	33548534	chr1:33548534:C:A	rs12751162	C	A	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	33558258	33558259	chr1:33558259:A:G	rs76776666	A	G	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	33558266	33558267	chr1:33558267:G:C	rs915107	G	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr1	33737074	33737075	chr1:33737075:T:G	rs10914769	T	G	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr1	33973692	33973693	chr1:33973693:C:T	rs506546	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr1	34266206	34266207	chr1:34266207:G:A	rs77231008	G	A	G	Sox1.mouse_HMG_4	9	1	+	7.12927450788134	10.494095395384347	TGAATCAGCGTTCA
chr1	34268684	34268685	chr1:34268685:G:A	rs771395	G	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	34395639	34395640	chr1:34395640:A:G	rs79076660	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	34654389	34654390	chr1:34654390:C:T	rs1415025	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	34711846	34711847	chr1:34711847:G:T	rs61776057	G	T	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr1	34843369	34843370	chr1:34843370:A:C	rs928117152	A	C	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	35193418	35193419	chr1:35193419:C:G	rs12075169	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	35637434	35637435	chr1:35637435:A:G	rs7535473	A	G	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	36701012	36701013	chr1:36701013:C:T	rs34550707	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	36928572	36928573	chr1:36928573:G:T	rs116731477	G	T	G	Sox1.mouse_HMG_4	4	1	-	4.883386102836396	0.7593209391652149	TGAACCTACATGCA
chr1	37465315	37465316	chr1:37465316:T:C	rs2783725	T	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	37562046	37562047	chr1:37562047:G:A	rs113215442	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr1	37595121	37595122	chr1:37595122:T:A	rs10908361	T	A	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	37621373	37621374	chr1:37621374:G:A	rs112998422	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	37908687	37908688	chr1:37908688:T:C	rs114255784	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr1	37908719	37908720	chr1:37908720:C:G	rs61776677	C	G	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	38138414	38138415	chr1:38138415:C:T	rs12028791	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	38153455	38153456	chr1:38153456:A:G	rs72663644	A	G	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	38153468	38153469	chr1:38153469:A:G	rs748953	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	38590428	38590429	chr1:38590429:T:C	rs78541528	T	C	T	Sox1.mouse_HMG_4	5	1	-	10.323246157166016	9.88146693456068	GGAATATAAATTCA
chr1	39062087	39062088	chr1:39062088:G:A	rs7364654	G	A	g	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	39206189	39206190	chr1:39206190:A:G	rs1031169686	A	G	A	Sox1.mouse_HMG_4	7	1	-	11.437664426392926	11.199751587207743	TGAATATTTAGTCA
chr1	39268756	39268757	chr1:39268757:G:A	rs758933140	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	39278039	39278040	chr1:39278040:A:T	rs2252549	A	T	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	39406416	39406417	chr1:39406417:G:A	rs79388602	G	A	G	Sox1.mouse_HMG_4	4	1	-	8.00803224924182	10.730049068069219	TGAACAGAAATTCC
chr1	39493412	39493413	chr1:39493413:C:T	rs1809697	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	39562507	39562508	chr1:39562508:A:G	rs4660293	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr1	39837954	39837955	chr1:39837955:C:T	rs12123609	C	T	c	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	39848176	39848177	chr1:39848177:T:C	rs1333742	T	C	T	Sox1.mouse_HMG_4	11	1	+	4.542701736257047	-2.337713177930522	TGAACAGGTGGTCA
chr1	40337449	40337450	chr1:40337450:G:A	rs517364	G	A	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	40555926	40555927	chr1:40555927:T:G	rs4660426	T	G	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr1	40700188	40700189	chr1:40700189:A:C	rs1008204	A	C	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	40700203	40700204	chr1:40700204:A:G	rs1008203	A	G	a	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	40736101	40736102	chr1:40736102:C:T	rs192301638	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	40736127	40736128	chr1:40736128:T:C	rs75991985	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	40769074	40769075	chr1:40769075:G:A	rs187174335	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	40821775	40821776	chr1:40821776:T:A	rs4483396	T	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	40886675	40886676	chr1:40886676:C:T	rs79481872	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	40978964	40978965	chr1:40978965:C:T	rs144297525	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	40985533	40985534	chr1:40985534:A:G	rs56770595	A	G	A	Sox1.mouse_HMG_4	6	1	+	5.374466288809518	5.456047018236808	TGTACAAACATTCA
chr1	41315340	41315341	chr1:41315341:T:C	rs4233488	T	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	41330803	41330804	chr1:41330804:C:T	rs72667615	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	41653094	41653095	chr1:41653095:A:G	rs4393146	A	G	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	41768421	41768422	chr1:41768422:A:G	rs11578234	A	G	G	Sox1.mouse_HMG_4	3	1	+	10.273568507512215	3.386148597708016	GGAATTATAATTCA
chr1	41790095	41790096	chr1:41790096:T:C	rs400187	T	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	41813840	41813841	chr1:41813841:T:C	rs349442	T	C	C	Sox1.mouse_HMG_4	11	1	+	7.724582555428244	0.8441676412406753	TGACTAGCCATTCC
chr1	42041679	42041680	chr1:42041680:C:T	rs190726135	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr1	42420513	42420514	chr1:42420514:A:G	rs10493109	A	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	42961214	42961215	chr1:42961215:C:G	rs75076086	C	G	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr1	43092976	43092977	chr1:43092977:T:C	rs1339707	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	43322083	43322084	chr1:43322084:G:A	rs141350660	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	43711197	43711198	chr1:43711198:C:T	rs72884945	C	T	C	Sox1.mouse_HMG_4	8	1	+	9.99093014776478	9.849898849437638	TGACTTCTCATTCA
chr1	43711209	43711210	chr1:43711210:G:A	rs77151807	G	A	g	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	43821441	43821442	chr1:43821442:C:T	chr1:43821442:C:T	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.12003830907661	3.979007010749469	GGAAGGAACATTCA
chr1	43821443	43821444	chr1:43821444:T:G	rs3791068	T	G	T	Sox1.mouse_HMG_4	10	1	+	4.12003830907661	0.7552174215736029	GGAAGGAACATTCA
chr1	44036977	44036978	chr1:44036978:G:C	rs2485992	G	C	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	44273497	44273498	chr1:44273498:G:T	rs4660782	G	T	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	44483194	44483195	chr1:44483195:C:T	rs72895522	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	44489507	44489508	chr1:44489508:A:G	rs76652114	A	G	A	Sox1.mouse_HMG_4	5	1	+	7.24830413312067	6.806524910515333	TGAATACACATTGA
chr1	44489525	44489526	chr1:44489526:A:G	rs116593999	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	44819898	44819899	chr1:44819899:A:C	rs181420462	A	C	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	44819915	44819916	chr1:44819916:A:G	rs182864574	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.370780756089413	0.4833608462852157	TGAATAAAAACTCA
chr1	44819916	44819917	chr1:44819917:T:C	rs41269083	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.370780756089413	4.648763937262014	TGAATAAAAACTCA
chr1	44819935	44819936	chr1:44819936:C:T	rs567801023	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	44819938	44819939	chr1:44819939:C:T	rs144745590	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr1	44819940	44819941	chr1:44819941:C:T	rs184930641	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	44819941	44819942	chr1:44819942:G:A	rs540658149	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	44819942	44819943	chr1:44819943:G:A	rs188241457	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	45007643	45007644	chr1:45007644:C:T	rs4660830	C	T	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr1	45589927	45589928	chr1:45589928:C:T	rs2152078	C	T	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	45971519	45971520	chr1:45971520:A:C	rs72692632	A	C	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	46020241	46020242	chr1:46020242:C:T	rs11211250	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	46137171	46137172	chr1:46137172:G:A	rs1416706	G	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	46153354	46153355	chr1:46153355:G:C	rs10493121	G	C	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	46520454	46520455	chr1:46520455:G:C	rs72894638	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	46688182	46688183	chr1:46688183:T:A	rs11211340	T	A	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	47203652	47203653	chr1:47203653:G:A	rs12760654	G	A	G	Sox1.mouse_HMG_4	4	1	-	4.903951437666054	7.6259682564934534	TGAACGTTCTTTCA
chr1	47325567	47325568	chr1:47325568:G:T	rs72686222	G	T	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	47526040	47526041	chr1:47526041:C:T	rs76630974	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	47699935	47699936	chr1:47699936:T:G	rs13374953	T	G	T	Sox1.mouse_HMG_4	10	1	+	6.836304699921236	3.471483812418229	TGAATGCACGTGCA
chr1	47921215	47921216	chr1:47921216:C:T	rs1497095	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	47994234	47994235	chr1:47994235:C:T	rs3814006	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	48008320	48008321	chr1:48008321:A:C	rs11205435	A	C	C	Sox1.mouse_HMG_4	2	1	+	9.013224216964149	2.1044694376489286	TGAATGTGAATGCA
chr1	48062569	48062570	chr1:48062570:C:T	rs302681	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	48239718	48239719	chr1:48239719:G:A	rs11205459	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr1	48827007	48827008	chr1:48827008:C:A	rs4926763	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	49063919	49063920	chr1:49063920:G:T	rs17369068	G	T	G	Sox1.mouse_HMG_4	5	1	-	5.00659888905626	8.566314392662225	TGAACCTTTATGCA
chr1	50157651	50157652	chr1:50157652:A:G	rs114429849	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr1	50322659	50322660	chr1:50322660:C:G	rs7516333	C	G	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	50531788	50531789	chr1:50531789:T:C	rs12135541	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.455053197256574	-2.427691918721395	TGAATCACTCTTCA
chr1	51230627	51230628	chr1:51230628:C:T	rs72896422	C	T	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	52112134	52112135	chr1:52112135:C:T	rs10788939	C	T	c	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	52631532	52631533	chr1:52631533:G:C	rs2050694	G	C	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	52699936	52699937	chr1:52699937:C:T	rs6688064	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	52908993	52908994	chr1:52908994:C:T	rs562641	C	T	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr1	52926924	52926925	chr1:52926925:G:T	rs28384398	G	T	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	53032013	53032014	chr1:53032014:T:C	rs4638058	T	C	N	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr1	53128518	53128519	chr1:53128519:G:A	rs1679962	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	53145864	53145865	chr1:53145865:G:A	rs7552743	G	A	G	Sox1.mouse_HMG_4	1	1	+	6.896085231123526	-0.012669548191693858	TGAACGCCAAGTCA
chr1	53145867	53145868	chr1:53145868:C:T	rs7531069	C	T	C	Sox1.mouse_HMG_4	4	1	+	6.896085231123526	9.618102049950924	TGAACGCCAAGTCA
chr1	53313768	53313769	chr1:53313769:G:T	rs12084300	G	T	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr1	53455604	53455605	chr1:53455605:C:A	rs61592837	C	A	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr1	53554448	53554449	chr1:53554449:T:C	rs78514812	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.869353984328924	-2.0180659254752724	TGAATAGCCGGGCA
chr1	53621453	53621454	chr1:53621454:C:T	rs3006901	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	53730769	53730770	chr1:53730770:C:T	rs78770536	C	T	C	Sox1.mouse_HMG_4	8	1	+	6.836304699921236	6.695273401594095	TGAATGCACGTGCA
chr1	54017146	54017147	chr1:54017147:C:T	rs111491582	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	54111834	54111835	chr1:54111835:G:A	rs55850011	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	54448615	54448616	chr1:54448616:A:G	rs4268303	A	G	G	Sox1.mouse_HMG_4	4	1	-	4.351389386212877	1.629372567385478	GGAATGATCAGGCA
chr1	54796492	54796493	chr1:54796493:C:T	rs880755	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	54841827	54841828	chr1:54841828:A:G	rs41297871	A	G	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	54925702	54925703	chr1:54925703:G:A	rs117779762	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr1	54966076	54966077	chr1:54966077:C:G	rs12402488	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	55057809	55057810	chr1:55057810:C:T	rs534347	C	T	C	Sox1.mouse_HMG_4	1	1	-	10.680454947166298	3.771700167851077	TGAACTCCTATTCA
chr1	55402374	55402375	chr1:55402375:G:C	rs149813011	G	C	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr1	55446510	55446511	chr1:55446511:C:T	rs1986518	C	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr1	55474695	55474696	chr1:55474696:A:G	rs1392141	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.4349450814183955	-2.440824051705887	TGAACTTCCATTGA
chr1	55552772	55552773	chr1:55552773:A:G	rs6682182	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	55607584	55607585	chr1:55607585:A:G	rs11206636	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	55700834	55700835	chr1:55700835:A:C	rs12239009	A	C	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	55827575	55827576	chr1:55827576:G:A	rs114718226	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr1	55867516	55867517	chr1:55867517:C:T	rs76573794	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.567780052498151	7.42674875417101	GGAATATACATGCA
chr1	56190382	56190383	chr1:56190383:G:A	rs74072853	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.710814919799302	7.948727758984487	TGAATGACCAGGCA
chr1	56190393	56190394	chr1:56190394:A:C	rs1149647	A	C	c	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	56316666	56316667	chr1:56316667:A:G	rs3005891	A	G	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	56425046	56425047	chr1:56425047:G:A	rs78347133	G	A	G	Sox1.mouse_HMG_4	11	1	+	6.873046169287173	3.5067853575059145	TGAATCTCAATGCA
chr1	56459845	56459846	chr1:56459846:G:A	rs61772577	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	56798119	56798120	chr1:56798120:T:C	rs12033684	T	C	T	Sox1.mouse_HMG_4	8	1	+	8.037032538737066	8.178063837064208	TGAATAGATATTTA
chr1	57412213	57412214	chr1:57412214:G:A	rs182202240	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	57440372	57440373	chr1:57440373:C:T	rs12758741	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr1	57883332	57883333	chr1:57883333:T:C	rs1202824	T	C	.	Sox1.mouse_HMG_4	13	1	-	8.809095481572994	1.9263503655950247	GGAACAATTATTCA
chr1	57894223	57894224	chr1:57894224:G:C	rs1202833	G	C	.	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	57994657	57994658	chr1:57994658:A:C	rs17116665	A	C	A	Sox1.mouse_HMG_4	2	1	+	4.610505253698501	-2.2982495256167192	GGAATAGACAGGCA
chr1	58019196	58019197	chr1:58019197:A:G	rs1188003	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.596084495583714	1.8740676767563154	TGAATCACCCTTCA
chr1	58031676	58031677	chr1:58031677:T:C	rs12026684	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	58062831	58062832	chr1:58062832:G:A	rs148452523	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	58460722	58460723	chr1:58460723:G:T	rs12040053	G	T	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	58545231	58545232	chr1:58545232:A:T	rs10789066	A	T	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	58815208	58815209	chr1:58815209:T:A	rs2760468	T	A	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	58923244	58923245	chr1:58923245:C:T	rs117073348	C	T	C	Sox1.mouse_HMG_4	9	1	-	7.792395649226592	11.1572165367296	TGAATGGCCGTGCA
chr1	59013128	59013129	chr1:59013129:A:G	rs2716145	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr1	59238065	59238066	chr1:59238066:T:C	rs6703534	T	C	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr1	59808847	59808848	chr1:59808848:A:C	rs75514570	A	C	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	59994644	59994645	chr1:59994645:A:T	rs145049758	A	T	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr1	60171786	60171787	chr1:60171787:G:A	rs80065062	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	60941416	60941417	chr1:60941417:G:A	rs1819555	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	60941446	60941447	chr1:60941447:G:C	rs1819554	G	C	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr1	61203030	61203031	chr1:61203031:G:A	rs72929838	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr1	61268902	61268903	chr1:61268903:A:G	rs17121878	A	G	A	Sox1.mouse_HMG_4	3	1	+	4.4044493731468	-2.4829705366573966	TGAATGGACTGTCA
chr1	61452848	61452849	chr1:61452849:C:G	rs181799623	C	G	C	Sox1.mouse_HMG_4	10	1	+	6.548933026934989	10.059881272556263	TGAATACCAACTCA
chr1	61746930	61746931	chr1:61746931:T:C	rs74076163	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	61746931	61746932	chr1:61746932:G:C	rs17378676	G	C	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	62034882	62034883	chr1:62034883:C:T	rs7520924	C	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	62196119	62196120	chr1:62196120:G:A	rs6656763	G	A	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	62308089	62308090	chr1:62308090:G:A	rs143374464	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	63188584	63188585	chr1:63188585:C:T	rs67736570	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	63480468	63480469	chr1:63480469:T:C	rs2036868	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr1	63507782	63507783	chr1:63507783:T:C	rs10889425	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	63731369	63731370	chr1:63731370:A:G	rs4529740	A	G	G	Sox1.mouse_HMG_4	9	1	+	6.870296756217641	3.5054758687146332	GGAATTTCCATTCC
chr1	63810493	63810494	chr1:63810494:C:A	rs149075062	C	A	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	63828461	63828462	chr1:63828462:G:A	rs653049	G	A	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	63950442	63950443	chr1:63950443:G:A	rs114559479	G	A	G	Sox1.mouse_HMG_4	12	1	-	10.356752777877512	3.4479979985622915	TGAATTATAATGCA
chr1	64124869	64124870	chr1:64124870:G:C	rs57082090	G	C	G	Sox1.mouse_HMG_4	4	1	-	4.11678881857425	-0.007276345096931758	TGAACTGCAAATCA
chr1	64223797	64223798	chr1:64223798:G:A	rs1541063	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	64326182	64326183	chr1:64326183:C:T	rs746633	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	64841949	64841950	chr1:64841950:A:G	rs74080749	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	64861788	64861789	chr1:64861789:C:T	rs533293374	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr1	65147234	65147235	chr1:65147235:G:A	rs72677673	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	65622145	65622146	chr1:65622146:T:A	rs6658330	T	A	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	65766008	65766009	chr1:65766009:G:A	rs4350183	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	65769735	65769736	chr1:65769736:T:C	rs67013326	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	65769767	65769768	chr1:65769768:A:G	rs114693753	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	65964508	65964509	chr1:65964509:G:C	rs1318475	G	C	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	66268062	66268063	chr1:66268063:G:A	rs75762678	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	66271900	66271901	chr1:66271901:A:G	rs72679155	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	66477006	66477007	chr1:66477007:A:G	rs699248	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	66563874	66563875	chr1:66563875:C:G	rs12081718	C	G	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	66945114	66945115	chr1:66945115:T:C	rs143124684	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	66951766	66951767	chr1:66951767:C:T	rs17129538	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	67190602	67190603	chr1:67190603:A:G	rs11209013	A	G	A	Sox1.mouse_HMG_4	13	1	+	10.732395786807382	3.849650670829414	TGAATAAAAATGCA
chr1	67214637	67214638	chr1:67214638:G:A	rs114425253	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	67452230	67452231	chr1:67452231:A:G	rs12138671	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.580725464292599	1.215904576789592	GGAATAGACATTTA
chr1	67551712	67551713	chr1:67551713:T:C	rs12119894	T	C	C	Sox1.mouse_HMG_4	13	1	-	7.419375839325764	0.5366307233477947	TGAATAGAAATTAA
chr1	67792345	67792346	chr1:67792346:A:G	rs1276298	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	67941900	67941901	chr1:67941901:C:T	rs1938426	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	67979220	67979221	chr1:67979221:T:C	rs114883763	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	68210845	68210846	chr1:68210846:C:T	rs10889751	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	68271699	68271700	chr1:68271700:C:A	rs59129922	C	A	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	68453211	68453212	chr1:68453212:C:T	rs436070	C	T	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	68889327	68889328	chr1:68889328:T:C	rs28599531	T	C	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	69733201	69733202	chr1:69733202:G:A	rs6667737	G	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr1	70084781	70084782	chr1:70084782:G:C	rs61784291	G	C	G	Sox1.mouse_HMG_4	5	1	-	4.277988217230921	7.395924498231546	GGAACCCACATTCA
chr1	70092037	70092038	chr1:70092038:A:T	rs61784293	A	T	A	Sox1.mouse_HMG_4	11	1	-	4.437599940631328	-2.442814973556241	TAAATTGTCAGTCA
chr1	70376222	70376223	chr1:70376223:C:T	rs55687135	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	70415033	70415034	chr1:70415034:T:C	rs681475	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	70415034	70415035	chr1:70415035:T:C	rs115228206	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	70685171	70685172	chr1:70685172:A:G	rs1932061	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.163616301074911	0.28087118509694164	TGAATTTACTTTCA
chr1	71098863	71098864	chr1:71098864:C:T	rs75682272	C	T	C	Sox1.mouse_HMG_4	5	1	-	4.166881027987089	4.60866025059243	TGAATGACCATGGA
chr1	71098885	71098886	chr1:71098886:A:T	rs61778912	A	T	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	71425680	71425681	chr1:71425681:A:G	rs11209782	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	71502771	71502772	chr1:71502772:A:G	rs357230	A	G	G	Sox1.mouse_HMG_4	4	1	-	6.93545169779728	4.213434878969881	TGAATTTATAGTCC
chr1	71534237	71534238	chr1:71534238:A:T	rs12129849	A	T	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	71658020	71658021	chr1:71658021:C:T	rs1537716	C	T	C	Sox1.mouse_HMG_4	6	1	-	7.661389529807196	7.579808800379905	TGAATTGTTATTAA
chr1	72154277	72154278	chr1:72154278:C:A	rs2422137	C	A	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	72197892	72197893	chr1:72197893:C:T	rs12141242	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr1	72285450	72285451	chr1:72285451:C:T	rs3101337	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr1	73473111	73473112	chr1:73473112:T:G	rs78527600	T	G	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	73523381	73523382	chr1:73523382:C:A	rs12139606	C	A	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	73873291	73873292	chr1:73873292:G:T	rs1979216	G	T	T	Sox1.mouse_HMG_4	4	1	-	4.89539693961189	0.7713317759407083	GGACCAAACATTCA
chr1	75437410	75437411	chr1:75437411:C:T	rs79810704	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	76069425	76069426	chr1:76069426:C:T	rs699830	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	76344066	76344067	chr1:76344067:A:G	rs17098793	A	G	A	Sox1.mouse_HMG_4	3	1	+	8.628035667391288	1.7406157575870898	TGAACAAATATGCA
chr1	76476867	76476868	chr1:76476868:T:G	rs7555277	T	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr1	76578718	76578719	chr1:76578719:G:A	rs315030	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	77280835	77280836	chr1:77280836:A:T	rs2799568	A	T	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	77368540	77368541	chr1:77368541:C:G	rs61783076	C	G	C	Sox1.mouse_HMG_4	5	1	+	5.618956282628596	8.73689256362922	TGACTCTGAATTCA
chr1	77447283	77447284	chr1:77447284:T:C	rs1874819	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	77460609	77460610	chr1:77460610:A:C	rs7534707	A	C	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr1	78003975	78003976	chr1:78003976:A:G	rs11162405	A	G	A	Sox1.mouse_HMG_4	7	1	+	7.629486450033707	6.67805946207188	TGAATATATATTTA
chr1	78145291	78145292	chr1:78145292:A:G	rs191744040	A	G	A	Sox1.mouse_HMG_4	3	1	+	11.748328974238241	4.860909064434044	TGAATAGCCAGTCA
chr1	78833601	78833602	chr1:78833602:C:A	rs114715125	C	A	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	78872993	78872994	chr1:78872994:G:A	rs139157999	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.879558735968551	-2.029196043346669	TGAATAATCAAGCA
chr1	79128942	79128943	chr1:79128943:C:A	chr1:79128943:C:A	C	A	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	79847744	79847745	chr1:79847745:T:C	rs12119972	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	79982497	79982498	chr1:79982498:C:G	rs9988466	C	G	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	79982520	79982521	chr1:79982521:T:C	rs78862312	T	C	T	Sox1.mouse_HMG_4	9	1	-	6.768603254638357	3.40378236713535	GGAACTTGCATTCA
chr1	80060098	80060099	chr1:80060099:A:G	rs11162911	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.313638849499632	0.4262189396954341	GGAACTACAATTCA
chr1	80339186	80339187	chr1:80339187:C:T	rs17488710	C	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	80343021	80343022	chr1:80343022:T:G	rs17435926	T	G	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	80565768	80565769	chr1:80565769:C:T	rs17398889	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.4895816603509795	7.348550362023839	TGAATTAACTTTCA
chr1	80882835	80882836	chr1:80882836:G:A	rs185286722	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	81076005	81076006	chr1:81076006:C:A	rs7413227	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr1	81258085	81258086	chr1:81258086:A:G	rs12737330	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr1	81388179	81388180	chr1:81388180:A:T	rs4650367	A	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	81467296	81467297	chr1:81467297:G:A	rs12081728	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr1	81574407	81574408	chr1:81574408:A:G	rs74863859	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	81584819	81584820	chr1:81584820:G:A	rs75992300	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	81682560	81682561	chr1:81682561:T:C	rs559004677	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	81682607	81682608	chr1:81682608:G:C	rs575762495	G	C	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	81798663	81798664	chr1:81798664:G:C	rs868202038	G	C	G	Sox1.mouse_HMG_4	12	1	-	4.455053197256574	-2.4537015820586463	TGAATCACTCTTCA
chr1	81830980	81830981	chr1:81830981:C:T	rs35134484	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.402941337844434	0.49418655852921245	CGAATCAATATTCA
chr1	81876681	81876682	chr1:81876682:G:A	rs12143946	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr1	82327768	82327769	chr1:82327769:T:G	rs6667706	T	G	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	82359792	82359793	chr1:82359793:C:A	rs139371077	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr1	82490013	82490014	chr1:82490014:G:C	rs12120389	G	C	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	82741255	82741256	chr1:82741256:T:C	rs1409795	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.520952569997488	-2.361792545980481	GGAACAGCAATGCA
chr1	83370229	83370230	chr1:83370230:C:T	rs2069114	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr1	83511444	83511445	chr1:83511445:T:C	rs17130615	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr1	83517568	83517569	chr1:83517569:T:C	rs7553619	T	C	C	Sox1.mouse_HMG_4	6	1	-	4.166881027987089	4.24846175741438	TGAATGACCATGAA
chr1	83822285	83822286	chr1:83822286:A:G	rs35260485	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr1	83901597	83901598	chr1:83901598:C:T	rs187514332	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	84103346	84103347	chr1:84103347:G:T	rs185115136	G	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	84223824	84223825	chr1:84223825:T:G	rs638545	T	G	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr1	84304734	84304735	chr1:84304735:A:G	rs188817	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr1	85379683	85379684	chr1:85379684:T:C	rs997251	T	C	T	Sox1.mouse_HMG_4	6	1	+	7.385851561303414	6.863637946063236	TGACCTTATATTCA
chr1	85906193	85906194	chr1:85906194:G:A	rs1481202	G	A	A	Sox1.mouse_HMG_4	6	1	-	5.603177177976327	6.125390793216504	TGACTTCAAAGTCA
chr1	86071853	86071854	chr1:86071854:G:A	rs111943767	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr1	86201660	86201661	chr1:86201661:A:C	rs11583102	A	C	A	Sox1.mouse_HMG_4	11	1	-	11.153030856481834	7.638876754075524	TGACTATTCATTCA
chr1	86201672	86201673	chr1:86201673:T:C	rs11581326	T	C	T	Sox1.mouse_HMG_4	10	1	+	8.470647786738862	1.5948786536145814	TGAATAGTCATACA
chr1	86617268	86617269	chr1:86617269:T:C	rs35673485	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	86703761	86703762	chr1:86703762:A:C	rs930215807	A	C	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr1	86793622	86793623	chr1:86793623:T:C	rs12074463	T	C	C	Sox1.mouse_HMG_4	9	1	+	4.877955195030542	4.877955195030542	GGAATAGTCTTTCA
chr1	87103243	87103244	chr1:87103244:A:G	rs72957707	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	87386679	87386680	chr1:87386680:C:T	rs12034810	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	87386700	87386701	chr1:87386701:A:T	rs7537916	A	T	A	Sox1.mouse_HMG_4	9	1	+	8.045041311670701	1.1692721785464208	AGAATGGTCATTCA
chr1	88236703	88236704	chr1:88236704:A:G	rs6673046	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr1	88237119	88237120	chr1:88237120:C:T	rs34263925	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	88890280	88890281	chr1:88890281:C:G	rs77261327	C	G	C	Sox1.mouse_HMG_4	5	1	-	3.7059481075593306	0.588011826558706	TGGATGCTCAGTCA
chr1	89099164	89099165	chr1:89099165:C:A	rs190187601	C	A	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	89438554	89438555	chr1:89438555:G:A	rs61443369	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	89767879	89767880	chr1:89767880:A:G	rs508373	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	89845127	89845128	chr1:89845128:C:G	rs146186947	C	G	C	Sox1.mouse_HMG_4	12	1	+	7.175143267548802	0.2663884882335814	AGAATTTACATTCA
chr1	89980909	89980910	chr1:89980910:C:A	rs2816872	C	A	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	90067392	90067393	chr1:90067393:C:G	rs114377071	C	G	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	90114768	90114769	chr1:90114769:C:A	chr1:90114769:C:A	C	A	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	90613974	90613975	chr1:90613975:G:A	rs11589620	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	90760008	90760009	chr1:90760009:G:A	rs4658171	G	A	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	91124672	91124673	chr1:91124673:C:T	rs1828024	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	91537919	91537920	chr1:91537920:C:T	rs1531232	C	T	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	91679464	91679465	chr1:91679465:G:A	rs75335243	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr1	91699778	91699779	chr1:91699779:C:T	rs140122374	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	91715913	91715914	chr1:91715914:C:G	rs75989895	C	G	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	91799356	91799357	chr1:91799357:G:A	rs113155803	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	91913709	91913710	chr1:91913710:T:C	rs1019375551	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	92016634	92016635	chr1:92016635:T:G	rs74101080	T	G	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	92040976	92040977	chr1:92040977:T:C	rs6656733	T	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	92080893	92080894	chr1:92080894:C:T	rs187517881	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	92543162	92543163	chr1:92543163:G:T	rs10735779	G	T	T	Sox1.mouse_HMG_4	12	1	-	4.661346296866901	-2.2474084824483196	TGAATGTAGATGCA
chr1	92757027	92757028	chr1:92757028:C:T	rs74607587	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.434945081418395	7.156961900245793	TAAACTTCCATTCA
chr1	92994403	92994404	chr1:92994404:C:T	rs191580945	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	93172842	93172843	chr1:93172843:G:A	rs1932314	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	93219627	93219628	chr1:93219628:C:T	rs183643476	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	93411795	93411796	chr1:93411796:G:A	rs11164922	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	93722555	93722556	chr1:93722556:G:A	rs980418727	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr1	94051428	94051429	chr1:94051429:A:C	rs1191231	A	C	A	Sox1.mouse_HMG_4	13	1	+	5.503713133109652	1.905631582537886	TGATCAGCCATTCA
chr1	94072454	94072455	chr1:94072455:G:A	rs1761375	G	A	G	Sox1.mouse_HMG_4	6	1	+	7.716605570063707	7.635024840636418	TGAATAGTATTTCA
chr1	94216209	94216210	chr1:94216210:T:C	rs57666908	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr1	94691182	94691183	chr1:94691183:G:A	rs10874881	G	A	G	Sox1.mouse_HMG_4	4	1	-	8.35620378195428	11.078220600781677	TGAACAGTAATGCA
chr1	94721084	94721085	chr1:94721085:G:A	rs2802101	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	94797515	94797516	chr1:94797516:C:T	rs1053826253	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	94801363	94801364	chr1:94801364:T:A	rs12132021	T	A	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	95019261	95019262	chr1:95019262:T:A	rs12408845	T	A	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	95084504	95084505	chr1:95084505:T:A	rs12724815	T	A	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr1	95171375	95171376	chr1:95171376:G:T	rs72722164	G	T	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr1	95227199	95227200	chr1:95227200:A:G	rs11165346	A	G	A	Sox1.mouse_HMG_4	10	1	-	10.918367786351478	4.0425986532271985	TGAACTCTTATTCA
chr1	95276054	95276055	chr1:95276055:T:C	rs11165361	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	95543387	95543388	chr1:95543388:A:G	rs678378	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr1	95789939	95789940	chr1:95789940:C:G	rs10874951	C	G	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr1	95888693	95888694	chr1:95888694:C:G	rs77358602	C	G	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	95985352	95985353	chr1:95985353:T:A	rs141360862	T	A	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	96010936	96010937	chr1:96010937:A:G	rs321241	A	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	96372954	96372955	chr1:96372955:G:A	rs11165606	G	A	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	96372956	96372957	chr1:96372957:G:A	rs11165607	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	96389119	96389120	chr1:96389120:C:T	rs143176335	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	96419470	96419471	chr1:96419471:C:G	rs17459990	C	G	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	96502814	96502815	chr1:96502815:T:C	rs9804071	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr1	96558697	96558698	chr1:96558698:T:C	chr1:96558698:T:C	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.757619483969891	0.8748743679919215	TGAGTGGACATTCA
chr1	96915638	96915639	chr1:96915639:T:A	rs78663128	T	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	97655051	97655052	chr1:97655052:C:T	rs139858815	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	97669137	97669138	chr1:97669138:A:G	rs78070973	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	97729228	97729229	chr1:97729229:C:T	rs72734017	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	97797546	97797547	chr1:97797547:G:A	rs113455750	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	98034488	98034489	chr1:98034489:G:C	rs7554283	G	C	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	98426280	98426281	chr1:98426281:A:G	rs6700104	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	98496796	98496797	chr1:98496797:C:T	rs6604108	C	T	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	98502130	98502131	chr1:98502131:C:T	rs1434357	C	T	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	98736215	98736216	chr1:98736216:T:C	rs11810907	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.050353886542841	-2.832391229435128	TAAATTGCCATGCA
chr1	98937640	98937641	chr1:98937641:T:C	rs309057	T	C	c	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	98959513	98959514	chr1:98959514:T:C	rs1571502	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.923448957960874	4.201432139133475	TGAATGGAAAGTCC
chr1	99064510	99064511	chr1:99064511:T:G	rs12409665	T	G	T	Sox1.mouse_HMG_4	7	1	-	4.73457919533264	4.760910440694464	TGAACTAACATTAA
chr1	99227439	99227440	chr1:99227440:A:G	rs71659188	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	99594140	99594141	chr1:99594141:T:C	rs6665212	T	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	99594177	99594178	chr1:99594178:A:T	rs6662233	A	T	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	99661290	99661291	chr1:99661291:A:G	rs1338572	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.905391544451742	1.0296224113274606	TGACTAGTTATGCA
chr1	99662778	99662779	chr1:99662779:G:A	rs76831347	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	99681730	99681731	chr1:99681731:A:G	rs12122854	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	99776491	99776492	chr1:99776492:A:C	rs10875257	A	C	A	Sox1.mouse_HMG_4	10	1	-	4.696463495943814	1.3316426084408073	TGAGCTGATATTCA
chr1	99820995	99820996	chr1:99820996:A:T	rs3920022	A	T	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	100253063	100253064	chr1:100253064:C:T	rs59180049	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	100795552	100795553	chr1:100795553:T:C	rs79324909	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	100855369	100855370	chr1:100855370:G:C	rs114882394	G	C	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	100855386	100855387	chr1:100855387:A:G	rs115744905	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	101187428	101187429	chr1:101187429:T:C	rs72989115	T	C	T	Sox1.mouse_HMG_4	9	1	-	10.467635128989249	7.102814241486239	TGAATTTCCATTCC
chr1	101204283	101204284	chr1:101204284:G:T	rs1571498	G	T	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	101205109	101205110	chr1:101205110:C:A	rs7534410	C	A	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	102072018	102072019	chr1:102072019:G:A	rs11164374	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	103076868	103076869	chr1:103076869:T:A	rs12131399	T	A	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	103125360	103125361	chr1:103125361:G:A	rs12126147	G	A	A	Sox1.mouse_HMG_4	12	1	-	3.7102826519018235	-3.198472127413397	GGAATACCCTTTCA
chr1	103189689	103189690	chr1:103189690:G:A	rs35286522	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	103296656	103296657	chr1:103296657:A:G	rs11164768	A	G	G	Sox1.mouse_HMG_4	2	1	+	4.674937961017215	-2.233816818298004	GGAACAGTAATTCC
chr1	103931734	103931735	chr1:103931735:G:A	rs35018254	G	A	-	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	104004197	104004198	chr1:104004198:C:T	rs1330408	C	T	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	104061222	104061223	chr1:104061223:A:G	rs11185369	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.802420828134335	0.9196757121563657	TTAATTGTCATTCA
chr1	104074549	104074550	chr1:104074550:A:G	rs2149604	A	G	G	Sox1.mouse_HMG_4	13	1	-	4.580136745412828	7.864800310819032	TGAATGATCAGTCT
chr1	104156881	104156882	chr1:104156882:A:G	rs34116274	A	G	G	Sox1.mouse_HMG_4	2	1	+	6.8801887563370805	-0.02856602297814015	TGACTATTAATGCA
chr1	105318754	105318755	chr1:105318755:T:C	rs2455667	T	C	T	Sox1.mouse_HMG_4	5	1	-	5.401899359477255	4.960120136871916	TGAACAGACAGTCC
chr1	105439178	105439179	chr1:105439179:T:C	rs6677879	T	C	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr1	105443199	105443200	chr1:105443200:C:T	rs4572018	C	T	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	105658423	105658424	chr1:105658424:T:C	rs4915113	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr1	106218118	106218119	chr1:106218119:C:T	rs11806395	C	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	107552818	107552819	chr1:107552819:T:A	rs17476816	T	A	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	107947952	107947953	chr1:107947953:C:T	rs345281	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	108010227	108010228	chr1:108010228:C:T	rs1557057	C	T	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr1	108016411	108016412	chr1:108016412:T:C	rs1781051	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	108818186	108818187	chr1:108818187:T:A	rs1767036	T	A	A	Sox1.mouse_HMG_4	9	1	-	6.824217131133312	-0.05155200199096943	TGACTGCTCAGTCA
chr1	108893505	108893506	chr1:108893506:A:G	rs12726126	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.829834639913609	0.9470895239356398	TGAATATCCTTTCA
chr1	108962530	108962531	chr1:108962531:G:C	rs115313079	G	C	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	109154887	109154888	chr1:109154888:G:C	rs580771	G	C	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr1	109257457	109257458	chr1:109257458:A:G	rs79551419	A	G	A	Sox1.mouse_HMG_4	10	1	-	6.834864775642983	-0.04090435748129839	TGAATGCACATACA
chr1	109566125	109566126	chr1:109566126:G:C	rs142639967	G	C	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	109780254	109780255	chr1:109780255:A:G	rs7523091	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.0290992351940265	0.12754948801942634	TGAAGTGCCATTCC
chr1	109780255	109780256	chr1:109780256:T:C	rs1041715461	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	109960249	109960250	chr1:109960250:A:G	rs147343972	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr1	110409535	110409536	chr1:110409536:A:G	rs4839377	A	G	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	110496094	110496095	chr1:110496095:C:G	rs112484806	C	G	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	110505747	110505748	chr1:110505748:C:G	rs1290262	C	G	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	110551591	110551592	chr1:110551592:T:A	rs77886791	T	A	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	110551594	110551595	chr1:110551595:C:G	rs78034352	C	G	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	110628360	110628361	chr1:110628361:G:A	rs17634761	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	111158062	111158063	chr1:111158063:T:C	rs2580040	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	111552402	111552403	chr1:111552403:G:A	rs2786974	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.7452454345479165	7.267459049788093	GGAACACGTATTCA
chr1	111563761	111563762	chr1:111563762:G:T	rs17027995	G	T	G	Sox1.mouse_HMG_4	12	1	-	8.483130122296926	1.574375342981705	GGAACATTTATTCA
chr1	111647854	111647855	chr1:111647855:T:A	rs115053728	T	A	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	111723743	111723744	chr1:111723744:T:C	rs197427	T	C	C	Sox1.mouse_HMG_4	7	1	-	5.844356039114036	4.892929051152207	TGAATGCAAATGCC
chr1	112255428	112255429	chr1:112255429:G:A	rs12089446	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	112387383	112387384	chr1:112387384:A:C	rs12080074	A	C	a	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	112468621	112468622	chr1:112468622:C:T	rs7416024	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	112852349	112852350	chr1:112852350:C:T	rs75875159	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr1	113389843	113389844	chr1:113389844:G:A	rs141142328	G	A	g	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr1	113948157	113948158	chr1:113948158:A:G	rs1553450	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.991382894451273	1.089833147276673	TGAACAGTAAGGCA
chr1	113979473	113979474	chr1:113979474:G:T	rs1368814215	G	T	G	Sox1.mouse_HMG_4	12	1	-	4.553317225968716	-2.355437553346505	GGAACGTACAGTCA
chr1	113979477	113979478	chr1:113979478:G:C	rs375578039	G	C	G	Sox1.mouse_HMG_4	8	1	-	4.553317225968716	-1.5086756798288017	GGAACGTACAGTCA
chr1	114037887	114037888	chr1:114037888:C:T	rs2938342	C	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	114040634	114040635	chr1:114040635:A:T	rs10776777	A	T	T	Sox1.mouse_HMG_4	13	1	+	5.077487034108205	-1.8052580818697646	TGAATAGTCAGTAA
chr1	114223784	114223785	chr1:114223785:T:C	rs72692085	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	114319895	114319896	chr1:114319896:T:C	rs621231	T	C	T	Sox1.mouse_HMG_4	2	1	-	9.800289364125684	2.891534584810463	TGAATACAAATTCC
chr1	115067469	115067470	chr1:115067470:T:C	rs717275	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr1	115079238	115079239	chr1:115079239:C:T	rs17479252	C	T	C	Sox1.mouse_HMG_4	7	1	+	6.548933026934989	6.7868458661201725	TGAATACCAACTCA
chr1	115118517	115118518	chr1:115118518:C:A	rs1750402	C	A	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	115263337	115263338	chr1:115263338:C:T	rs11581489	C	T	c	Sox1.mouse_HMG_4	12	1	+	7.268913328937382	0.3601585496221611	TGACCTCTCATTCA
chr1	115289161	115289162	chr1:115289162:C:T	rs2268793	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	115302100	115302101	chr1:115302101:C:T	rs11466087	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr1	115322770	115322771	chr1:115322771:C:A	rs11466074	C	A	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	115728255	115728256	chr1:115728256:T:C	rs72703628	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	115731166	115731167	chr1:115731167:A:G	rs3010396	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	115998200	115998201	chr1:115998201:T:G	rs7527213	T	G	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	116033836	116033837	chr1:116033837:C:T	rs75119142	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	116150847	116150848	chr1:116150848:A:G	rs10802163	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	116494745	116494746	chr1:116494746:A:G	rs143728622	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	117006882	117006883	chr1:117006883:G:A	rs12038289	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	117067990	117067991	chr1:117067991:A:G	rs2801940	A	G	G	Sox1.mouse_HMG_4	8	1	-	7.2639687061311635	7.405000004458304	CGAATGGCTAGTCA
chr1	117079663	117079664	chr1:117079664:A:G	rs2801939	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	117340010	117340011	chr1:117340011:A:C	rs17037147	A	C	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	117370065	117370066	chr1:117370066:A:G	rs3767790	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	117641201	117641202	chr1:117641202:G:C	rs76585205	G	C	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	117883774	117883775	chr1:117883775:T:C	rs2273578	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.822858657059921	5.1008418382325225	TGAATATCCATTCT
chr1	118256606	118256607	chr1:118256607:C:T	rs12081441	C	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	118588799	118588800	chr1:118588800:A:T	chr1:118588800:A:T	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	118627646	118627647	chr1:118627647:T:C	rs58060170	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	118768568	118768569	chr1:118768569:A:G	rs726637	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr1	118786687	118786688	chr1:118786688:T:C	rs12129194	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	118902802	118902803	chr1:118902803:C:T	rs115551315	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr1	118934970	118934971	chr1:118934971:A:T	rs6656528	A	T	A	Sox1.mouse_HMG_4	7	1	+	10.060094289097103	10.324338373644105	TGAATGCATATGCA
chr1	119041213	119041214	chr1:119041214:A:T	rs12032374	A	T	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	119535406	119535407	chr1:119535407:G:A	rs10754406	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.606313531854264	4.524732802426973	TGAATAGCCATTGC
chr1	119721019	119721020	chr1:119721020:T:C	rs550174	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	119721033	119721034	chr1:119721034:A:G	rs894079	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	120420264	120420265	chr1:120420265:G:A	rs2660553	G	A	g	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	120420287	120420288	chr1:120420288:G:A	rs2660552	G	A	g	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr1	121234789	121234790	chr1:121234790:T:C	rs587718995	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	125080226	125080227	chr1:125080227:C:T	rs1263934055	C	T	.	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr1	125080368	125080369	chr1:125080369:C:T	rs1489436730	C	T	.	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	143194689	143194690	chr1:143194690:A:T	rs1474739748	A	T	.	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	143232016	143232017	chr1:143232017:T:A	rs1342035526	T	A	.	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	143232029	143232030	chr1:143232030:T:C	rs1360356684	T	C	.	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	143232045	143232046	chr1:143232046:G:T	rs1305460603	G	T	.	Sox1.mouse_HMG_4	12	1	+	4.763388819412314	4.763388819412314	GGAATAATCATTGA
chr1	145011447	145011448	chr1:145011448:A:G	rs148260687	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	145979711	145979712	chr1:145979712:G:C	rs952139484	G	C	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	147248013	147248014	chr1:147248014:G:A	rs67248543	G	A	a	Sox1.mouse_HMG_4	6	1	-	4.418241662157072	4.940455277397248	TGAACACATAATCA
chr1	147377636	147377637	chr1:147377637:C:G	rs1178441607	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	147503951	147503952	chr1:147503952:C:T	rs612963	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	147509543	147509544	chr1:147509544:G:A	rs12085860	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	147744731	147744732	chr1:147744732:T:C	rs6684174	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	147753760	147753761	chr1:147753761:T:C	rs192510775	T	C	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	147794995	147794996	chr1:147794996:T:C	rs11240123	T	C	C	Sox1.mouse_HMG_4	10	1	+	4.8201081670687	-2.055660966055582	TGAATAGTTTTGCA
chr1	148158249	148158250	chr1:148158250:C:T	rs1252570137	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.423214604558628	7.282183306231487	TGAATTTTCATCCA
chr1	149747171	149747172	chr1:149747172:G:A	rs114969164	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	150623888	150623889	chr1:150623889:A:G	rs150444624	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr1	150623934	150623935	chr1:150623935:C:A	rs7517	C	A	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	150963491	150963492	chr1:150963492:T:C	rs10157132	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	150979508	150979509	chr1:150979509:G:A	rs192112113	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	150982243	150982244	chr1:150982244:G:A	rs28521412	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	151165316	151165317	chr1:151165317:C:G	rs41308397	C	G	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	151255005	151255006	chr1:151255006:C:G	rs11204789	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	151310542	151310543	chr1:151310543:T:C	rs943637	T	C	T	Sox1.mouse_HMG_4	5	1	-	4.262183417767702	3.8204041951623626	GGAAGATCCATTCA
chr1	151579895	151579896	chr1:151579896:T:A	rs3748606	T	A	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr1	151867361	151867362	chr1:151867362:A:C	rs12566232	A	C	a	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	152190091	152190092	chr1:152190092:T:C	rs4845733	T	C	C	Sox1.mouse_HMG_4	4	1	+	10.682190148083992	7.960173329256593	TGAATACTTATTCC
chr1	152190094	152190095	chr1:152190095:T:G	chr1:152190095:T:G	T	G	T	Sox1.mouse_HMG_4	7	1	+	10.682190148083992	9.466519075575158	TGAATACTTATTCC
chr1	152566916	152566917	chr1:152566917:G:A	rs17659389	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr1	153527159	153527160	chr1:153527160:G:A	rs969586073	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	153542502	153542503	chr1:153542503:T:G	rs73026335	T	G	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	153553872	153553873	chr1:153553873:T:G	rs3953061	T	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	153657976	153657977	chr1:153657977:A:G	rs138845914	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	154083115	154083116	chr1:154083116:G:C	rs11586701	G	C	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr1	154207202	154207203	chr1:154207203:T:C	rs6719	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.179203666922144	-0.7035414490558249	TGGATTTGCATTCA
chr1	154408307	154408308	chr1:154408308:T:C	rs11265610	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	154496383	154496384	chr1:154496384:G:C	rs560009925	G	C	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	154911265	154911266	chr1:154911266:G:A	rs72995438	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	154948944	154948945	chr1:154948945:T:C	rs111290363	T	C	c	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	155002203	155002204	chr1:155002204:G:C	rs1023724194	G	C	G	Sox1.mouse_HMG_4	6	1	-	3.9428001371704253	4.872559841113961	TGAATACCCGCTCA
chr1	155224887	155224888	chr1:155224888:A:G	rs16836748	A	G	A	Sox1.mouse_HMG_4	10	1	-	3.6912280953472534	-3.1845410377770276	TGAAAAGGCATTCC
chr1	155464267	155464268	chr1:155464268:C:T	rs919843319	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	156070518	156070519	chr1:156070519:A:G	rs2275075	A	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	156273014	156273015	chr1:156273015:A:G	rs11264463	A	G	G	Sox1.mouse_HMG_4	10	1	-	7.734455707391302	0.8586865742670204	GGAACAAGCATTCA
chr1	156421771	156421772	chr1:156421772:C:G	rs376393334	C	G	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	156592119	156592120	chr1:156592120:G:C	rs149164071	G	C	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	157247630	157247631	chr1:157247631:C:G	rs723543	C	G	c	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	157332558	157332559	chr1:157332559:A:G	rs9426952	A	G	N	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	157570027	157570028	chr1:157570028:G:A	rs77960425	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	158496173	158496174	chr1:158496174:G:A	rs73027798	G	A	g	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	158527288	158527289	chr1:158527289:T:C	rs10797023	T	C	C	Sox1.mouse_HMG_4	4	1	+	3.2638576482331976	0.5418408294057977	GGAATGCCCATCCA
chr1	158684796	158684797	chr1:158684797:A:T	rs3835726	A	T	a	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr1	158834191	158834192	chr1:158834192:T:C	rs6698593	T	C	t	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	159092181	159092182	chr1:159092182:G:A	rs72709590	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	159261096	159261097	chr1:159261097:A:C	rs61828208	A	C	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	160157444	160157445	chr1:160157445:C:T	rs10908763	C	T	T	Sox1.mouse_HMG_4	10	1	-	4.643954539538971	1.1330062939176961	GGAACAGAAAGTCA
chr1	160374394	160374395	chr1:160374395:A:G	rs932746	A	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	160395156	160395157	chr1:160395157:G:A	rs12739519	G	A	a	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	160451989	160451990	chr1:160451990:T:C	rs116414780	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.226636849102379	0.35086771597809796	TGTATAGGCATTCA
chr1	160547086	160547087	chr1:160547087:T:C	rs11586224	T	C	t	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	160549537	160549538	chr1:160549538:C:G	rs3766386	C	G	c	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	160707867	160707868	chr1:160707868:A:G	chr1:160707868:A:G	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	160712794	160712795	chr1:160712795:G:A	rs35304526	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	160823769	160823770	chr1:160823770:A:G	rs509749	A	G	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr1	160993580	160993581	chr1:160993581:A:G	rs746235617	A	G	A	Sox1.mouse_HMG_4	4	1	-	13.688243525164108	10.966226706336709	TGAATTGAAATTCA
chr1	161084263	161084264	chr1:161084264:T:C	rs3892375	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	161084308	161084309	chr1:161084309:A:G	rs141745832	A	G	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	161092230	161092231	chr1:161092231:T:C	rs77618518	T	C	T	Sox1.mouse_HMG_4	0	1	+	9.94542151374907	6.043871766574473	TGAATTCCCATTCC
chr1	161545385	161545386	chr1:161545386:T:C	rs10429882	T	C	T	Sox1.mouse_HMG_4	4	1	+	3.6622841225217098	0.9402673036943108	GGAATAGGCAATCA
chr1	161626858	161626859	chr1:161626859:T:A	rs117463942	T	A	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	161772101	161772102	chr1:161772102:A:G	rs2089085	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	162137045	162137046	chr1:162137046:C:T	rs77771805	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.300092410557856	-2.608662368757363	AGAACGGAAATTCA
chr1	162142478	162142479	chr1:162142479:G:T	rs74125929	G	T	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	162142481	162142482	chr1:162142482:T:G	rs74125930	T	G	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	162301772	162301773	chr1:162301773:G:T	rs114979216	G	T	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	162302458	162302459	chr1:162302459:C:T	rs16859958	C	T	C	Sox1.mouse_HMG_4	12	1	+	6.814637415902943	-0.09411736341227805	TGAATGGGCAGGCA
chr1	162710699	162710700	chr1:162710700:T:C	rs10799868	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	162711042	162711043	chr1:162711043:C:T	rs16843784	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	162908860	162908861	chr1:162908861:G:A	rs10917637	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	163077594	163077595	chr1:163077595:G:T	rs12411109	G	T	.	Sox1.mouse_HMG_4	12	1	-	4.0017588033064895	-2.906995976008731	TGAATTACCCTGCA
chr1	163285628	163285629	chr1:163285629:G:A	rs10917714	G	A	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	163872384	163872385	chr1:163872385:G:A	rs767544	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	163894013	163894014	chr1:163894014:C:T	rs1989728	C	T	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	164605816	164605817	chr1:164605817:A:G	rs7517971	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.242980761435664	3.5209639426082644	GGAATTGGTATGCA
chr1	164664019	164664020	chr1:164664020:G:C	rs12121197	G	C	C	Sox1.mouse_HMG_4	2	1	+	4.437599940631328	4.437599940631328	TGGATTGTCAGTCA
chr1	164754426	164754427	chr1:164754427:T:G	chr1:164754427:T:G	T	G	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr1	164768311	164768312	chr1:164768312:T:C	rs7521521	T	C	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	164770176	164770177	chr1:164770177:A:G	rs12732181	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	164912245	164912246	chr1:164912246:C:T	rs12063847	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	165284499	165284500	chr1:165284500:C:A	rs114673747	C	A	C	Sox1.mouse_HMG_4	8	1	+	6.733056686475652	5.9743686887372105	TGAATGAGCAGGCA
chr1	165356267	165356268	chr1:165356268:C:T	rs112895630	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr1	165356284	165356285	chr1:165356285:T:C	rs561174809	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.383603667016558	-0.499141448961411	TGACTTGAAATGCA
chr1	165373863	165373864	chr1:165373864:T:C	rs12136025	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr1	165702582	165702583	chr1:165702583:T:C	rs7530127	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	165936198	165936199	chr1:165936199:A:G	rs12727124	A	G	G	Sox1.mouse_HMG_4	10	1	-	7.044823259457814	0.1690541263335339	TGAATACACATGCC
chr1	166236266	166236267	chr1:166236267:C:T	rs1451600	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr1	167077728	167077729	chr1:167077729:G:A	rs61814862	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	167360225	167360226	chr1:167360226:A:G	rs117595623	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	167360251	167360252	chr1:167360252:G:C	rs6427084	G	C	C	Sox1.mouse_HMG_4	6	1	+	4.957790605292087	4.028030901348552	TGAGTAGTTAGTCA
chr1	167470300	167470301	chr1:167470301:C:T	rs2949659	C	T	T	Sox1.mouse_HMG_4	0	1	+	8.08203720703589	11.983586954210491	CGAACATCCATTCA
chr1	167530457	167530458	chr1:167530458:C:G	rs35514002	C	G	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	168535402	168535403	chr1:168535403:A:C	rs7519937	A	C	A	Sox1.mouse_HMG_4	1	1	-	4.787122520877761	11.69587730019298	TTAATAGTTATGCA
chr1	168625701	168625702	chr1:168625702:A:G	rs2064298	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	168643686	168643687	chr1:168643687:A:G	rs6427139	A	G	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	168706732	168706733	chr1:168706733:G:A	rs530022	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	168752638	168752639	chr1:168752639:C:G	rs12563398	C	G	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr1	168755821	168755822	chr1:168755822:G:A	rs76422892	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	168976139	168976140	chr1:168976140:G:A	rs539749887	G	A	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	169120349	169120350	chr1:169120350:T:A	rs3766038	T	A	A	Sox1.mouse_HMG_4	0	1	+	8.000528699005873	1.1362865323554814	TGAATGGTCATTAA
chr1	169238599	169238600	chr1:169238600:A:G	rs10489417	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	169486334	169486335	chr1:169486335:C:T	rs993482885	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr1	169486337	169486338	chr1:169486338:C:T	rs72542446	C	T	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	169680389	169680390	chr1:169680390:G:A	rs10489183	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	169765795	169765796	chr1:169765796:T:A	rs17593568	T	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	170078088	170078089	chr1:170078089:G:A	rs80075382	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	170202372	170202373	chr1:170202373:T:A	rs10919327	T	A	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr1	170292045	170292046	chr1:170292046:C:G	rs68008235	C	G	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	170511150	170511151	chr1:170511151:G:A	rs10800526	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	170533412	170533413	chr1:170533413:A:G	rs182193737	A	G	a	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	170863700	170863701	chr1:170863701:C:T	rs10489235	C	T	T	Sox1.mouse_HMG_4	12	1	+	4.684758601705622	-2.2239961776095987	TGAACCTCTATTCC
chr1	170868151	170868152	chr1:170868152:G:A	rs3765378	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr1	170932054	170932055	chr1:170932055:T:C	rs3980710	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	171139117	171139118	chr1:171139118:T:C	rs148885051	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	171139139	171139140	chr1:171139140:A:G	rs7061859	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.1699456316101715	0.28720051563220217	TGAAAACATATTCA
chr1	171173435	171173436	chr1:171173436:A:G	rs12132443	A	G	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	171173460	171173461	chr1:171173461:A:C	rs78743342	A	C	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	171179581	171179582	chr1:171179582:G:A	rs7545923	G	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	171224768	171224769	chr1:171224769:T:C	rs111659296	T	C	T	Sox1.mouse_HMG_4	9	1	-	11.198567711110226	7.83374682360722	TGAACATAAATTCA
chr1	171226818	171226819	chr1:171226819:G:A	rs10912616	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	171438811	171438812	chr1:171438812:T:C	rs16864488	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	171686071	171686072	chr1:171686072:T:G	rs73042000	T	G	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	172003176	172003177	chr1:172003177:A:C	rs12406353	A	C	A	Sox1.mouse_HMG_4	0	1	-	10.840307761596495	7.242969388824887	TGAATAGCAATGCA
chr1	172177886	172177887	chr1:172177887:T:C	rs979021	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	172182676	172182677	chr1:172182677:T:A	rs480988	T	A	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	172324050	172324051	chr1:172324051:T:C	rs142257853	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr1	172390895	172390896	chr1:172390896:T:C	rs74126214	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.45196618916888	0.5761970560445986	GGAATGAACATGCA
chr1	172416628	172416629	chr1:172416629:C:T	rs16844423	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr1	172531581	172531582	chr1:172531582:C:T	rs115353976	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	173016090	173016091	chr1:173016091:T:C	rs1883478	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	173380585	173380586	chr1:173380586:A:C	rs2105325	A	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	173825407	173825408	chr1:173825408:T:G	rs202160561	T	G	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr1	174870688	174870689	chr1:174870689:T:A	rs7543595	T	A	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	174953220	174953221	chr1:174953221:G:A	rs1894680	G	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	175084549	175084550	chr1:175084550:C:T	rs55895008	C	T	c	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	175128194	175128195	chr1:175128195:G:A	rs10912891	G	A	A	Sox1.mouse_HMG_4	9	1	+	4.988798100971904	8.35361898847491	TGAACGACCGTGCA
chr1	175128212	175128213	chr1:175128213:C:T	rs7547567	C	T	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr1	175433684	175433685	chr1:175433685:T:C	rs182738487	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	175544133	175544134	chr1:175544134:G:C	rs4650921	G	C	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	175554947	175554948	chr1:175554948:C:T	rs952510143	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	175917476	175917477	chr1:175917477:A:T	rs71514835	A	T	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	175920490	175920491	chr1:175920491:C:A	rs2030558	C	A	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	176114067	176114068	chr1:176114068:T:C	rs79433644	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	176693605	176693606	chr1:176693606:T:C	rs75347881	T	C	T	Sox1.mouse_HMG_4	4	1	+	3.985818360252651	1.2638015414252532	TGAATCCTCTTTCA
chr1	176829365	176829366	chr1:176829366:C:T	rs12141787	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr1	176975297	176975298	chr1:176975298:G:C	rs4415524	G	C	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	176995136	176995137	chr1:176995137:C:T	rs10798494	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	177334491	177334492	chr1:177334492:T:C	rs10798510	T	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	178173060	178173061	chr1:178173061:G:T	rs10047059	G	T	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	178173072	178173073	chr1:178173073:G:A	rs316274	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.594111297859971	0.6853565185447519	GGAATATCCATGCA
chr1	178448389	178448390	chr1:178448390:G:A	rs141625422	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.6660144483310875	4.584433718903798	TGAGTCGCCATTCA
chr1	178448892	178448893	chr1:178448893:T:C	rs147096949	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	178573071	178573072	chr1:178573072:G:A	rs12057234	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	178690233	178690234	chr1:178690234:T:A	rs145544750	T	A	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	179017488	179017489	chr1:179017489:T:C	rs12567630	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	179194069	179194070	chr1:179194070:G:A	rs60268764	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	179310422	179310423	chr1:179310423:T:C	rs114183266	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.140549782625268	0.23900003545066872	TGTATGAACATGCA
chr1	179815094	179815095	chr1:179815095:A:G	rs1386359808	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	179881407	179881408	chr1:179881408:C:G	rs2007148	C	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr1	180026777	180026778	chr1:180026778:A:G	rs75508984	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr1	180228278	180228279	chr1:180228279:C:T	rs3842892	C	T	c	Sox1.mouse_HMG_4	4	1	+	8.76746342478042	11.489480243607819	GGAACAGACATTCA
chr1	180534257	180534258	chr1:180534258:T:C	rs10914022	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	180574300	180574301	chr1:180574301:C:A	chr1:180574301:C:A	C	A	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	180752126	180752127	chr1:180752127:A:G	rs61809357	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	180752142	180752143	chr1:180752143:G:A	rs7550031	G	A	A	Sox1.mouse_HMG_4	6	1	+	7.571162389778269	7.489581660350979	TGAATTGACACTCA
chr1	181142116	181142117	chr1:181142117:A:G	rs3856077	A	G	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	181440349	181440350	chr1:181440350:G:T	rs11582261	G	T	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	181554378	181554379	chr1:181554379:G:C	rs2877684	G	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr1	181843334	181843335	chr1:181843335:A:G	rs626581	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr1	182147506	182147507	chr1:182147507:A:G	rs80101443	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr1	182268865	182268866	chr1:182268866:C:T	rs76200682	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	182290272	182290273	chr1:182290273:C:G	chr1:182290273:C:G	C	G	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	182406483	182406484	chr1:182406484:T:C	rs4652709	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr1	182726981	182726982	chr1:182726982:C:G	rs595289	C	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	182731937	182731938	chr1:182731938:T:G	rs1287982	T	G	G	Sox1.mouse_HMG_4	9	1	-	5.020158149390668	-1.8556109837336126	TGATCTATCATTCA
chr1	183059294	183059295	chr1:183059295:G:A	rs10797828	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr1	183174438	183174439	chr1:183174439:G:C	rs75177051	G	C	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	183571962	183571963	chr1:183571963:C:T	rs6667363	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	183571990	183571991	chr1:183571991:T:C	rs10911358	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.533883087178698	0.6581139540544176	TGATTACTCATTCA
chr1	183632195	183632196	chr1:183632196:C:T	rs17436125	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr1	183634487	183634488	chr1:183634488:T:C	rs16861318	T	C	T	Sox1.mouse_HMG_4	13	1	-	9.432773045503913	2.5500279295259443	TGAATTTGTATGCA
chr1	183733319	183733320	chr1:183733320:T:A	rs7536447	T	A	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr1	183998144	183998145	chr1:183998145:A:G	rs60313520	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.42674875417101	0.5509796210467284	GGAATATATATGCA
chr1	184472919	184472920	chr1:184472920:T:C	rs4651208	T	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	184577428	184577429	chr1:184577429:C:T	rs4651222	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	184635793	184635794	chr1:184635794:G:A	rs17578245	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	184966157	184966158	chr1:184966158:C:T	rs79775150	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.806187938236864	0.8974331589216431	TGAACACCTATGCA
chr1	185153765	185153766	chr1:185153766:A:T	rs76377915	A	T	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	185375631	185375632	chr1:185375632:A:G	rs977004	A	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	185491776	185491777	chr1:185491777:C:T	rs80301041	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr1	185527960	185527961	chr1:185527961:A:T	rs60046748	A	T	A	Sox1.mouse_HMG_4	10	1	-	6.887925669165288	0.012156536041006083	CGAATTTTCATGCA
chr1	186139539	186139540	chr1:186139540:G:A	rs10489753	G	A	G	Sox1.mouse_HMG_4	0	1	-	4.432712522300411	8.33426226947501	CGAATAGTTACTCA
chr1	186143372	186143373	chr1:186143373:A:G	rs6664918	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	186213023	186213024	chr1:186213024:T:C	rs6666859	T	C	T	Sox1.mouse_HMG_4	0	1	+	5.720291102783812	1.8187413556092122	TGGACAGTCATTCA
chr1	186498296	186498297	chr1:186498297:T:G	rs10489395	T	G	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	186930560	186930561	chr1:186930561:G:T	rs72709877	G	T	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr1	188170350	188170351	chr1:188170351:G:T	rs3851888	G	T	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr1	188355741	188355742	chr1:188355742:A:G	rs34774113	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	188489733	188489734	chr1:188489734:C:T	rs75553121	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.807696460657345	0.8989416813421245	TGAATGATTGTGCA
chr1	188793662	188793663	chr1:188793663:A:C	rs79915058	A	C	A	Sox1.mouse_HMG_4	8	1	+	7.627737064195524	8.386425061933965	TGAACTGCAAGTCA
chr1	189607324	189607325	chr1:189607325:T:C	rs13374066	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	189607326	189607327	chr1:189607327:A:C	rs12118969	A	C	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	189614471	189614472	chr1:189614472:A:C	rs10922360	A	C	a	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	190243418	190243419	chr1:190243419:T:G	rs192450961	T	G	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	190251985	190251986	chr1:190251986:T:C	rs7416623	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	190541428	190541429	chr1:190541429:G:A	rs10920739	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	191423392	191423393	chr1:191423393:A:C	rs10920941	A	C	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	191993913	191993914	chr1:191993914:G:T	rs1340650	G	T	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	192059738	192059739	chr1:192059739:C:T	rs10921073	C	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	192577921	192577922	chr1:192577922:G:T	rs10921202	G	T	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr1	192577943	192577944	chr1:192577944:C:A	rs2246829	C	A	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	192588211	192588212	chr1:192588212:T:C	rs757039884	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr1	192790571	192790572	chr1:192790572:T:A	rs12755351	T	A	T	Sox1.mouse_HMG_4	10	1	+	7.072072695523544	0.1963035623992624	TGAATTGTAATACA
chr1	192858558	192858559	chr1:192858559:A:G	rs73064200	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	192896574	192896575	chr1:192896575:G:T	rs4451535	G	T	g	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	193183468	193183469	chr1:193183469:G:C	rs6428154	G	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	193495272	193495273	chr1:193495273:G:A	rs6694325	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	193495306	193495307	chr1:193495307:G:A	rs6694398	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr1	193789686	193789687	chr1:193789687:T:G	rs1328181	T	G	T	Sox1.mouse_HMG_4	2	1	-	6.586749755625502	-0.3220050236897196	TAAATTGGCATTCA
chr1	193802180	193802181	chr1:193802181:C:G	rs10801255	C	G	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	193902435	193902436	chr1:193902436:A:C	rs2031748	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	194930708	194930709	chr1:194930709:G:T	rs339646	G	T	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	195144171	195144172	chr1:195144172:T:C	rs654163	T	C	C	Sox1.mouse_HMG_4	7	1	-	7.397145445260191	6.445718457298362	TTAATTGATATTCA
chr1	195197780	195197781	chr1:195197781:A:C	rs12755016	A	C	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	195278862	195278863	chr1:195278863:A:G	rs78881121	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	195292932	195292933	chr1:195292933:G:A	rs17661321	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	195328119	195328120	chr1:195328120:C:T	rs74132813	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	195585174	195585175	chr1:195585175:A:G	rs2486470	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	195847040	195847041	chr1:195847041:A:T	rs10801470	A	T	T	Sox1.mouse_HMG_4	4	1	-	6.236612982039898	-0.6094690004586829	TGACTCTGTATTCA
chr1	195847053	195847054	chr1:195847054:G:A	rs10754161	G	A	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	195856032	195856033	chr1:195856033:C:T	rs4466638	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	195856532	195856533	chr1:195856533:G:A	rs34167524	G	A	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	196002741	196002742	chr1:196002742:C:T	rs10922007	C	T	C	Sox1.mouse_HMG_4	9	1	-	6.836304699921236	10.201125587424242	TGAATGCACGTGCA
chr1	196033969	196033970	chr1:196033970:C:T	rs4439342	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr1	196355274	196355275	chr1:196355275:C:T	rs11806479	C	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr1	196774796	196774797	chr1:196774797:A:C	rs385390	A	C	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	197577760	197577761	chr1:197577761:G:A	rs6428410	G	A	A	Sox1.mouse_HMG_4	1	1	+	7.482048636142404	0.5732938568271841	TGAAGAGAAATTCA
chr1	197675642	197675643	chr1:197675643:C:T	rs9633354	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr1	197736744	197736745	chr1:197736745:A:T	rs937217442	A	T	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	197736759	197736760	chr1:197736760:T:G	rs76010531	T	G	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr1	197949411	197949412	chr1:197949412:G:C	rs12073527	G	C	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	198602109	198602110	chr1:198602110:C:A	rs73081334	C	A	c	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	198602150	198602151	chr1:198602151:G:A	rs965266869	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	198621946	198621947	chr1:198621947:G:A	rs16843476	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	198701518	198701519	chr1:198701519:T:C	rs78200658	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	199035864	199035865	chr1:199035865:C:G	rs10800606	C	G	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr1	199089763	199089764	chr1:199089764:A:T	rs322921	A	T	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	199909041	199909042	chr1:199909042:G:A	rs12564677	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	200022254	200022255	chr1:200022255:T:C	rs974830747	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr1	200052132	200052133	chr1:200052133:A:G	rs2821372	A	G	a	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr1	200121856	200121857	chr1:200121857:G:A	rs2816969	G	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	200290809	200290810	chr1:200290810:T:C	rs34959467	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	200290819	200290820	chr1:200290820:T:A	rs7527628	T	A	T	Sox1.mouse_HMG_4	7	1	+	8.470647786738862	8.206403702191858	TGAATAGTCATACA
chr1	200620042	200620043	chr1:200620043:G:T	rs2809353	G	T	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr1	200620064	200620065	chr1:200620065:T:G	rs2808243	T	G	G	Sox1.mouse_HMG_4	3	1	-	4.4349450814183955	0.6444593256771547	TGAACTTCCATTAA
chr1	200927168	200927169	chr1:200927169:G:A	rs561767	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	201353749	201353750	chr1:201353750:C:T	rs12409010	C	T	c	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	201377919	201377920	chr1:201377920:G:A	rs45529540	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	201409359	201409360	chr1:201409360:G:A	rs12048410	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	201983445	201983446	chr1:201983446:T:C	rs4950806	T	C	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr1	201983469	201983470	chr1:201983470:G:A	rs56768485	G	A	g	Sox1.mouse_HMG_4	7	1	-	4.821222540742104	5.059135379927287	TGAACAACAGGTCA
chr1	202108798	202108799	chr1:202108799:C:A	rs4950826	C	A	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	202108827	202108828	chr1:202108828:G:A	rs74740128	G	A	G	Sox1.mouse_HMG_4	11	1	+	4.582329005230607	1.2160681934493478	TGCATAAACATGCA
chr1	202154742	202154743	chr1:202154743:G:A	rs10920340	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	202274928	202274929	chr1:202274929:T:G	rs3010082	T	G	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	203052894	203052895	chr1:203052895:T:G	rs4245712	T	G	N	Sox1.mouse_HMG_4	3	1	-	4.839252612898452	1.0487668571572115	TGAATAGACAGTCT
chr1	203970389	203970390	chr1:203970390:A:G	rs1112076	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	204014730	204014731	chr1:204014731:T:C	rs10793749	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	204014743	204014744	chr1:204014744:C:T	rs10793750	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.321609596806975	4.180578298479834	GAAATGATCATTCA
chr1	204078391	204078392	chr1:204078392:G:A	rs17404301	G	A	G	Sox1.mouse_HMG_4	1	1	+	5.646991346042654	-1.2617634332725658	GGAATTCAAATGCA
chr1	204565942	204565943	chr1:204565943:T:C	rs74866621	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr1	204565948	204565949	chr1:204565949:C:T	rs56316905	C	T	C	Sox1.mouse_HMG_4	0	1	+	3.812471029409739	7.714020776584338	CGAATGACCAATCA
chr1	204565956	204565957	chr1:204565957:C:T	rs137953310	C	T	C	Sox1.mouse_HMG_4	8	1	+	3.812471029409739	3.6714397310825992	CGAATGACCAATCA
chr1	204565978	204565979	chr1:204565979:C:G	rs115512688	C	G	c	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	204592047	204592048	chr1:204592048:G:A	chr1:204592048:G:A	G	A	G	Sox1.mouse_HMG_4	5	1	-	4.584433718903798	7.5042621290328855	TGATTCACCATTCA
chr1	204914282	204914283	chr1:204914283:A:G	rs12562359	A	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	204973034	204973035	chr1:204973035:C:T	rs61817611	C	T	C	Sox1.mouse_HMG_4	0	1	+	6.753137064677158	10.654686811851755	CGAACAGGAATTCA
chr1	205048372	205048373	chr1:205048373:C:T	rs752163330	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	205048410	205048411	chr1:205048411:A:G	rs113117159	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	205493631	205493632	chr1:205493632:C:T	rs190989510	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	205524117	205524118	chr1:205524118:T:C	rs74141240	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	205538206	205538207	chr1:205538207:C:A	rs4245716	C	A	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	205545538	205545539	chr1:205545539:C:G	rs10751440	C	G	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	205693589	205693590	chr1:205693590:G:A	rs1172198	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	205693611	205693612	chr1:205693612:C:G	chr1:205693612:C:G	C	G	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	206013049	206013050	chr1:206013050:T:A	rs55693327	T	A	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr1	206558115	206558116	chr1:206558116:A:G	rs115098986	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.526287314293272	-2.3564578016846967	TAAACACACATTCA
chr1	206558118	206558119	chr1:206558119:G:T	rs550568903	G	T	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	207390367	207390368	chr1:207390368:T:C	rs982499404	T	C	T	Sox1.mouse_HMG_4	13	1	-	5.341346965271489	-1.5413981507064802	TAAACAGCTATTCA
chr1	207649378	207649379	chr1:207649379:G:T	rs6667118	G	T	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	207864257	207864258	chr1:207864258:G:A	chr1:207864258:G:A	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	208037777	208037778	chr1:208037778:A:G	rs601078	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr1	208080850	208080851	chr1:208080851:C:G	rs12031641	C	G	C	Sox1.mouse_HMG_4	4	1	+	9.031707509327424	4.907642345656242	GGAACAGTCATTCA
chr1	208151321	208151322	chr1:208151322:A:C	chr1:208151322:A:C	A	C	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	208230336	208230337	chr1:208230337:G:A	rs2590682	G	A	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	208748334	208748335	chr1:208748335:C:T	rs6699917	C	T	T	Sox1.mouse_HMG_4	1	1	-	5.006115717710199	-1.9026390616050188	AGAACAGTAATTCA
chr1	208758041	208758042	chr1:208758042:A:G	rs17259902	A	G	A	Sox1.mouse_HMG_4	0	1	-	15.005237886952138	11.103688139777535	TGAATAAACATTCA
chr1	208923885	208923886	chr1:208923886:G:T	rs116645828	G	T	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	208935147	208935148	chr1:208935148:G:A	rs1320539	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	209369309	209369310	chr1:209369310:G:T	rs546597022	G	T	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	209418664	209418665	chr1:209418665:A:G	rs11119271	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	209621206	209621207	chr1:209621207:T:G	rs742255	T	G	T	Sox1.mouse_HMG_4	9	1	-	7.795601506011629	0.919832372887347	TGAATGGCCACTCA
chr1	209800886	209800887	chr1:209800887:A:C	rs622832	A	C	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr1	209884015	209884016	chr1:209884016:G:A	rs183497879	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr1	210143727	210143728	chr1:210143728:T:A	rs74662042	T	A	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	210188346	210188347	chr1:210188347:G:T	rs111299109	G	T	-	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	210332291	210332292	chr1:210332292:G:T	rs78335529	G	T	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr1	210584623	210584624	chr1:210584624:G:A	rs112828862	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	210670594	210670595	chr1:210670595:A:G	rs34536170	A	G	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	211703245	211703246	chr1:211703246:G:T	rs76951658	G	T	G	Sox1.mouse_HMG_4	1	1	+	4.365518132068068	-2.5432366472471504	CGAAAAGCCATTCA
chr1	212192457	212192458	chr1:212192458:G:A	rs10863953	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr1	212549833	212549834	chr1:212549834:G:A	rs791851	G	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	212596077	212596078	chr1:212596078:G:A	rs141629691	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr1	213456478	213456479	chr1:213456479:G:A	rs12066137	G	A	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	213744822	213744823	chr1:213744823:C:T	rs61818933	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	213773189	213773190	chr1:213773190:G:A	rs74857851	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr1	214300731	214300732	chr1:214300732:A:G	rs68118165	A	G	A	Sox1.mouse_HMG_4	9	1	+	5.9020699506044245	2.5372490631014184	TGAATTCCAATTCT
chr1	214320662	214320663	chr1:214320663:C:T	rs12737638	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr1	214507034	214507035	chr1:214507035:C:T	rs6540844	C	T	T	Sox1.mouse_HMG_4	5	1	-	4.527662159366665	4.969441381972003	TGAATGGTTTGTCA
chr1	214685887	214685888	chr1:214685888:A:G	rs374482	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.145056119675089	0.2692869865508076	TTAATAAGCATTCA
chr1	216033156	216033157	chr1:216033157:G:T	rs74143911	G	T	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	216678833	216678834	chr1:216678834:A:G	rs4426040	A	G	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	216687644	216687645	chr1:216687645:G:A	rs77080810	G	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	217348853	217348854	chr1:217348854:T:C	rs2646799	T	C	C	Sox1.mouse_HMG_4	10	1	+	4.587793702977578	-2.2879754301467026	GGAACACTCATGCA
chr1	217369896	217369897	chr1:217369897:T:C	rs2815237	T	C	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	217877168	217877169	chr1:217877169:C:T	rs11117963	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	217930227	217930228	chr1:217930228:G:C	rs72732806	G	C	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr1	218566139	218566140	chr1:218566140:A:G	rs682483	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr1	218574257	218574258	chr1:218574258:G:A	rs77388458	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	218703763	218703764	chr1:218703764:A:C	rs1383755	A	C	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	218778952	218778953	chr1:218778953:T:C	rs9659264	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr1	218850363	218850364	chr1:218850364:G:A	rs642762	G	A	g	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	218870604	218870605	chr1:218870605:C:A	rs12043466	C	A	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	218954091	218954092	chr1:218954092:T:C	rs12406457	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr1	218971948	218971949	chr1:218971949:G:T	rs673785	G	T	T	Sox1.mouse_HMG_4	11	1	+	6.800446988419392	10.314601090825702	TGAATGGCAATGCC
chr1	219106080	219106081	chr1:219106081:A:G	rs11118213	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	219315657	219315658	chr1:219315658:A:G	rs1361431	A	G	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr1	219459310	219459311	chr1:219459311:C:T	rs73084044	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	219466308	219466309	chr1:219466309:G:A	rs12030393	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	219659406	219659407	chr1:219659407:C:T	rs184729750	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	220046034	220046035	chr1:220046035:G:A	chr1:220046035:G:A	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	220157976	220157977	chr1:220157977:T:G	rs3767654	T	G	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	220234012	220234013	chr1:220234013:A:G	rs11118507	A	G	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	220325992	220325993	chr1:220325993:A:G	rs60892757	A	G	G	Sox1.mouse_HMG_4	0	1	-	4.890777627743445	0.9892278805688453	TGAACTATTCTTCA
chr1	221033906	221033907	chr1:221033907:G:T	rs58487387	G	T	g	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	221279407	221279408	chr1:221279408:T:C	rs72744243	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.488720610827678	2.5871708636530784	TGATTTCATATTCA
chr1	221667603	221667604	chr1:221667604:T:C	rs12041614	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	221667610	221667611	chr1:221667611:C:A	rs113533905	C	A	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	221667611	221667612	chr1:221667612:T:C	rs542423730	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	221667632	221667633	chr1:221667633:G:A	rs572703677	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr1	221704796	221704797	chr1:221704797:T:C	rs1519463	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr1	221961853	221961854	chr1:221961854:G:A	rs74715317	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	222188572	222188573	chr1:222188573:T:C	rs2453619	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr1	222469976	222469977	chr1:222469977:A:G	rs3895963	A	G	-	Sox1.mouse_HMG_4	0	1	-	3.5307080651907876	-0.3708416819838123	TGAAAGCCCAGTCA
chr1	223075167	223075168	chr1:223075168:C:T	rs17701886	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	223632197	223632198	chr1:223632198:G:A	chr1:223632198:G:A	G	A	g	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr1	224050792	224050793	chr1:224050793:A:C	rs36067040	A	C	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr1	224050805	224050806	chr1:224050806:G:A	rs537531769	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr1	224115252	224115253	chr1:224115253:T:C	rs3767730	T	C	T	Sox1.mouse_HMG_4	6	1	-	4.76756484152358	4.849145570950871	TGAACTAACAATCA
chr1	224457886	224457887	chr1:224457887:A:G	chr1:224457887:A:G	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr1	224704062	224704063	chr1:224704063:A:G	rs12562581	A	G	G	Sox1.mouse_HMG_4	7	1	-	8.505536996857584	8.267624157672401	TGAACAGTAGTTCA
chr1	225549929	225549930	chr1:225549930:C:T	rs554744	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	225774822	225774823	chr1:225774823:A:G	rs1849685	A	G	A	Sox1.mouse_HMG_4	3	1	+	6.702629536368413	-0.18479037343578542	TGAACTCTAATTCC
chr1	225774837	225774838	chr1:225774838:G:A	rs6670903	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr1	225812943	225812944	chr1:225812944:C:G	rs150397580	C	G	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	225871809	225871810	chr1:225871810:G:A	rs57095220	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	225942769	225942770	chr1:225942770:T:C	rs3753675	T	C	T	Sox1.mouse_HMG_4	3	1	-	14.15705891243589	7.269639002631695	TGAATACACATTCA
chr1	226098355	226098356	chr1:226098356:A:G	rs907426413	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	226446517	226446518	chr1:226446518:T:G	rs870001	T	G	G	Sox1.mouse_HMG_4	8	1	-	10.732395786807382	11.491083784545825	TGAATAAAAATGCA
chr1	226511413	226511414	chr1:226511414:A:G	rs117704985	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.75237725175578	4.030360432928381	TGAATGCACAGTCC
chr1	226636904	226636905	chr1:226636905:C:T	rs1288460	C	T	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	226986353	226986354	chr1:226986354:T:C	rs75146933	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr1	227243704	227243705	chr1:227243705:C:T	rs4630094	C	T	T	Sox1.mouse_HMG_4	1	1	-	4.723368683835616	-2.1853860954796045	TGAACAGAAATTCT
chr1	227908734	227908735	chr1:227908735:A:C	rs10799458	A	C	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr1	227913189	227913190	chr1:227913190:A:G	rs7552818	A	G	G	Sox1.mouse_HMG_4	0	1	-	3.692931008833666	-0.2086187383409328	TGAATCGGCATTCT
chr1	228000583	228000584	chr1:228000584:G:A	rs144532425	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr1	228031235	228031236	chr1:228031236:G:A	rs74143618	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr1	228104999	228105000	chr1:228105000:T:G	rs74140962	T	G	G	Sox1.mouse_HMG_4	2	1	-	3.6192876894726664	-3.289467089842554	TGAAAGCTCATGCA
chr1	228196059	228196060	chr1:228196060:C:G	rs10916276	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr1	228463309	228463310	chr1:228463310:T:C	rs6426503	T	C	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr1	228697318	228697319	chr1:228697319:A:C	rs72750025	A	C	A	Sox1.mouse_HMG_4	3	1	+	11.34543506165131	7.554949305910069	TGAATATTCATTCC
chr1	228777519	228777520	chr1:228777520:C:T	rs72751961	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr1	228848536	228848537	chr1:228848537:G:A	rs116332356	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr1	228868498	228868499	chr1:228868499:C:T	rs74939273	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr1	228938813	228938814	chr1:228938814:A:T	rs944037532	A	T	a	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	229487383	229487384	chr1:229487384:G:C	rs6678721	G	C	G	Sox1.mouse_HMG_4	4	1	+	7.60084954040397	11.72491470407515	TGAAGTGACATTCA
chr1	229487389	229487390	chr1:229487390:T:C	rs4925493	T	C	C	Sox1.mouse_HMG_4	10	1	+	7.60084954040397	0.725080407279689	TGAAGTGACATTCA
chr1	229710940	229710941	chr1:229710941:G:A	rs1050739415	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	229943168	229943169	chr1:229943169:G:A	rs6666786	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	230130736	230130737	chr1:230130737:G:A	rs375891426	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	230262134	230262135	chr1:230262135:G:A	rs1214387457	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	230270537	230270538	chr1:230270538:C:T	chr1:230270538:C:T	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr1	230304060	230304061	chr1:230304061:A:G	rs34836081	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.542232301777926	1.1774114142749188	GGAACCCTCATTCA
chr1	230541489	230541490	chr1:230541490:G:A	rs12139982	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr1	230928799	230928800	chr1:230928800:T:C	rs1343674	T	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr1	231401796	231401797	chr1:231401797:G:A	rs2749711	G	A	A	Sox1.mouse_HMG_4	8	1	-	3.946156042434305	3.8051247441071645	TGAAAACACGTTCA
chr1	231487202	231487203	chr1:231487203:T:C	rs1769801	T	C	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	231487203	231487204	chr1:231487204:G:C	rs116240544	G	C	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	231606828	231606829	chr1:231606829:T:C	rs4658879	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	231719663	231719664	chr1:231719664:T:C	rs1954175	T	C	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	231834869	231834870	chr1:231834870:A:G	rs12406165	A	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr1	231834871	231834872	chr1:231834872:A:G	rs12406166	A	G	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr1	232209449	232209450	chr1:232209450:A:C	rs12022955	A	C	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr1	232404064	232404065	chr1:232404065:T:A	rs2275306	T	A	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	232462518	232462519	chr1:232462519:C:T	rs12140277	C	T	C	Sox1.mouse_HMG_4	11	1	-	4.87692313564408	1.510662323862821	TGAACTGTCATGCC
chr1	232524293	232524294	chr1:232524294:A:G	rs2182431	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr1	232553451	232553452	chr1:232553452:G:A	rs142171077	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr1	232686522	232686523	chr1:232686523:G:A	rs10910589	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	232925903	232925904	chr1:232925904:C:T	rs4350151	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr1	233356709	233356710	chr1:233356710:C:T	rs6665061	C	T	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr1	233372683	233372684	chr1:233372684:G:A	rs12568697	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	233615542	233615543	chr1:233615543:T:C	rs139488336	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr1	233636013	233636014	chr1:233636014:C:T	rs76343846	C	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	233636014	233636015	chr1:233636015:G:A	rs56039843	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr1	233849367	233849368	chr1:233849368:A:T	rs35168304	A	T	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr1	233999075	233999076	chr1:233999076:G:A	rs12023024	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr1	234296712	234296713	chr1:234296713:A:G	rs2025007	A	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr1	234296718	234296719	chr1:234296719:C:T	rs628407	C	T	T	Sox1.mouse_HMG_4	3	1	+	6.307391818237422	3.210457664174463	TGACTGAGCATGCA
chr1	234458705	234458706	chr1:234458706:C:T	rs77160133	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.618348333458243	4.5367676040309535	TGTATCGACATTCA
chr1	234505718	234505719	chr1:234505719:G:C	rs701186	G	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr1	234658212	234658213	chr1:234658213:T:C	rs10910481	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr1	234692707	234692708	chr1:234692708:A:G	rs533239040	A	G	A	Sox1.mouse_HMG_4	4	1	-	7.145056119675089	4.42303930084769	TCAATAAGCATTCA
chr1	234715648	234715649	chr1:234715649:C:T	rs633269	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr1	234721928	234721929	chr1:234721929:T:C	rs484084	T	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr1	234737527	234737528	chr1:234737528:A:C	rs822928	A	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr1	235469299	235469300	chr1:235469300:G:A	rs1466984439	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	235601670	235601671	chr1:235601671:T:A	rs59867624	T	A	T	Sox1.mouse_HMG_4	8	1	+	4.438950988165301	3.8212942887539985	TGGATAGATATTCC
chr1	235857916	235857917	chr1:235857917:A:G	rs7547309	A	G	G	Sox1.mouse_HMG_4	8	1	+	6.797180966466866	1.4938760584077906	TGACTTGTAAGTCA
chr1	236046496	236046497	chr1:236046497:A:C	rs114546281	A	C	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr1	236816296	236816297	chr1:236816297:A:G	rs3795708	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr1	236966995	236966996	chr1:236966996:T:C	rs1252126	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr1	236984548	236984549	chr1:236984549:A:G	rs1729485	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr1	237807181	237807182	chr1:237807182:A:G	chr1:237807182:A:G	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	237839340	237839341	chr1:237839341:C:G	rs11585037	C	G	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr1	237839371	237839372	chr1:237839372:A:G	rs761042722	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr1	237894688	237894689	chr1:237894689:T:C	rs1339646	T	C	T	Sox1.mouse_HMG_4	9	1	-	6.491354654881874	3.1265337673788673	CGACTACCCATTCA
chr1	238341302	238341303	chr1:238341303:T:C	chr1:238341303:T:C	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	238466794	238466795	chr1:238466795:A:T	rs7513347	A	T	A	Sox1.mouse_HMG_4	2	1	+	7.716605570063708	0.8078507907484871	TGAATAGTAAATCA
chr1	239743333	239743334	chr1:239743334:G:A	rs55973901	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr1	239792375	239792376	chr1:239792376:T:C	rs693948	T	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr1	239898334	239898335	chr1:239898335:T:C	rs10802816	T	C	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr1	240030261	240030262	chr1:240030262:G:A	rs61828675	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	240032996	240032997	chr1:240032997:G:T	rs35309998	G	T	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr1	240136585	240136586	chr1:240136586:G:A	rs537110603	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr1	240136609	240136610	chr1:240136610:T:G	rs190265713	T	G	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr1	241202435	241202436	chr1:241202436:C:T	rs1915881	C	T	T	Sox1.mouse_HMG_4	1	1	-	5.834691494932148	-1.074063284383072	TGAATTTGTATGCC
chr1	241519866	241519867	chr1:241519867:T:C	rs950412234	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.316214242890392	1.5941974240629928	TGAATGACCAGTAA
chr1	241542472	241542473	chr1:241542473:T:C	rs34554438	T	C	c	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr1	241749966	241749967	chr1:241749967:C:T	rs139039172	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	241893000	241893001	chr1:241893001:C:T	rs57430398	C	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	242186039	242186040	chr1:242186040:T:C	rs182358689	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr1	242242874	242242875	chr1:242242875:A:G	rs12723187	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr1	243433925	243433926	chr1:243433926:G:A	rs12039979	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	243830913	243830914	chr1:243830914:T:C	rs10927081	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr1	244089106	244089107	chr1:244089107:C:G	rs2453197	C	G	G	Sox1.mouse_HMG_4	9	1	+	7.988437455500715	11.499385701121987	TGAATAAATCTTCA
chr1	244092413	244092414	chr1:244092414:G:C	rs78448529	G	C	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr1	244325997	244325998	chr1:244325998:C:T	rs36119740	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr1	244454263	244454264	chr1:244454264:C:G	rs74151395	C	G	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr1	244673406	244673407	chr1:244673407:A:G	rs12743033	A	G	.	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr1	244673408	244673409	chr1:244673409:A:G	rs2173987	A	G	.	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr1	244713496	244713497	chr1:244713497:A:G	rs10754846	A	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr1	244993049	244993050	chr1:244993050:A:G	rs73123389	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr1	245402610	245402611	chr1:245402611:G:A	rs12121603	G	A	g	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	245409178	245409179	chr1:245409179:A:G	rs4658769	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr1	245538954	245538955	chr1:245538955:A:G	rs111408889	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr1	245585693	245585694	chr1:245585694:T:C	rs71636576	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr1	245655446	245655447	chr1:245655447:C:T	rs12745738	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr1	245863578	245863579	chr1:245863579:G:A	rs9730425	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr1	246057443	246057444	chr1:246057444:T:C	rs2485914	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr1	246404709	246404710	chr1:246404710:C:T	rs114263146	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr1	246573112	246573113	chr1:246573113:C:A	rs74923291	C	A	C	Sox1.mouse_HMG_4	6	1	+	5.849729041905353	6.697908016421597	TTAATTCAAATTCA
chr1	247408729	247408730	chr1:247408730:G:A	rs72771987	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr1	247875477	247875478	chr1:247875478:C:T	rs72774611	C	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr1	248821298	248821299	chr1:248821299:C:T	rs1269188433	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.566547393436856	4.4255160951097166	TGAATCAACGTGCA
chr10	378457	378458	chr10:378458:A:G	rs11252001	A	G	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	488753	488754	chr10:488754:G:A	rs139350494	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr10	673551	673552	chr10:673552:G:A	rs11253317	G	A	.	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr10	1074295	1074296	chr10:1074296:T:C	rs41299206	T	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr10	1153730	1153731	chr10:1153731:C:T	rs4450107	C	T	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr10	1367182	1367183	chr10:1367183:C:T	rs11250466	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr10	1367203	1367204	chr10:1367204:G:C	rs10903430	G	C	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr10	1367864	1367865	chr10:1367865:A:G	rs11250468	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	1384887	1384888	chr10:1384888:C:T	rs2387662	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr10	1404636	1404637	chr10:1404637:C:G	rs12773910	C	G	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	1482269	1482270	chr10:1482270:T:C	rs2138688	T	C	T	Sox1.mouse_HMG_4	5	1	-	7.822858657059921	7.3810794344545805	TGAATATCCATTCT
chr10	1499203	1499204	chr10:1499204:T:C	rs10437531	T	C	C	Sox1.mouse_HMG_4	1	1	+	4.790531398840277	4.790531398840277	TTAACACTCATTCA
chr10	1499229	1499230	chr10:1499230:G:A	rs115724260	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	1499281	1499282	chr10:1499282:T:C	rs10903468	T	C	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	1603162	1603163	chr10:1603163:T:A	rs200377100	T	A	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr10	1603179	1603180	chr10:1603180:T:C	rs12249622	T	C	T	Sox1.mouse_HMG_4	2	1	+	4.526287314293272	4.526287314293272	TGTACACACATTCA
chr10	1603191	1603192	chr10:1603192:C:A	rs72766704	C	A	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	1617986	1617987	chr10:1617987:T:G	rs17294005	T	G	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	1718324	1718325	chr10:1718325:G:C	rs7094290	G	C	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr10	1718352	1718353	chr10:1718353:A:G	rs7078880	A	G	G	Sox1.mouse_HMG_4	0	1	-	4.237167873457603	0.33561812628300314	TGACCGTCCATGCA
chr10	2071760	2071761	chr10:2071761:A:G	rs17155596	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.3389829980866175	1.6169661792592176	TGACTAAACAATCA
chr10	2295016	2295017	chr10:2295017:T:C	rs4593936	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	3010861	3010862	chr10:3010862:A:G	rs2279225	A	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	3010887	3010888	chr10:3010888:A:G	rs10903918	A	G	G	Sox1.mouse_HMG_4	9	1	+	6.979941292978037	3.6151204054750288	TGAATCAGCATGCA
chr10	3031945	3031946	chr10:3031946:A:G	rs10903935	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.579982286492443	1.2151613989894354	TGAATAGACATTTC
chr10	3482561	3482562	chr10:3482562:G:A	rs7923379	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	3716163	3716164	chr10:3716164:G:A	rs61831129	G	A	G	Sox1.mouse_HMG_4	7	1	+	11.005828720886843	11.95725570884867	TGAACATGCATTCA
chr10	3756450	3756451	chr10:3756451:C:T	rs72769378	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	3756981	3756982	chr10:3756982:A:C	rs72769379	A	C	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr10	4102413	4102414	chr10:4102414:T:A	rs559425388	T	A	T	Sox1.mouse_HMG_4	11	1	+	4.64004235584536	-2.2403725583422096	GGAATAGCCACTCA
chr10	4201463	4201464	chr10:4201464:C:T	rs2397412	C	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	4247026	4247027	chr10:4247027:T:A	rs115615743	T	A	T	Sox1.mouse_HMG_4	3	1	-	5.578631550171467	-1.3087883596327308	TGAAATCGTATTCA
chr10	4247400	4247401	chr10:4247401:T:C	rs377158084	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	4247431	4247432	chr10:4247432:A:C	rs185900447	A	C	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	4431625	4431626	chr10:4431626:C:A	rs1751278	C	A	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	4766198	4766199	chr10:4766199:C:G	rs1901634	C	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	4770961	4770962	chr10:4770962:A:G	rs11818567	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr10	4808119	4808120	chr10:4808120:T:C	rs78505172	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr10	4834433	4834434	chr10:4834434:A:T	rs4881353	A	T	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr10	5033646	5033647	chr10:5033647:C:A	rs77434680	C	A	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr10	5034799	5034800	chr10:5034800:A:G	rs7081949	A	G	A	Sox1.mouse_HMG_4	6	1	-	4.940455277397248	4.418241662157072	TGAACATATAATCA
chr10	5074127	5074128	chr10:5074128:C:G	rs1892403	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr10	5075609	5075610	chr10:5075610:C:T	rs7893254	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	5079840	5079841	chr10:5079841:A:G	rs11252924	A	G	A	Sox1.mouse_HMG_4	9	1	+	10.38420003346574	7.019379145962734	TGAATTTATATGCA
chr10	5095843	5095844	chr10:5095844:A:G	rs2518049	A	G	G	Sox1.mouse_HMG_4	9	1	+	4.070362342324779	0.7055414548217722	AGAATGACTATGCA
chr10	5399607	5399608	chr10:5399608:G:A	rs10795272	G	A	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	5517501	5517502	chr10:5517502:A:G	rs56144923	A	G	A	Sox1.mouse_HMG_4	7	1	+	6.467385741316655	5.515958753354827	TTAATTCATATTCA
chr10	5615563	5615564	chr10:5615564:T:C	rs11597151	T	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr10	5632794	5632795	chr10:5632795:T:A	rs4749853	T	A	t	Sox1.mouse_HMG_4	3	1	-	5.374466288809518	-1.5129536209946794	TCAACAAACATTCA
chr10	5684289	5684290	chr10:5684290:G:A	rs11596406	G	A	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	5854362	5854363	chr10:5854363:C:T	rs111287471	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	6023647	6023648	chr10:6023648:A:G	rs7900744	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	6064546	6064547	chr10:6064547:C:T	rs113812293	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	6091407	6091408	chr10:6091408:T:C	rs12220852	T	C	T	Sox1.mouse_HMG_4	13	1	-	5.315015719909668	-1.5677293960683016	TAAACAGATATTCA
chr10	6157889	6157890	chr10:6157890:G:C	rs10905919	G	C	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	6525012	6525013	chr10:6525013:T:C	rs4357599	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	6644347	6644348	chr10:6644348:T:G	rs116034873	T	G	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr10	7035420	7035421	chr10:7035421:G:C	rs7908885	G	C	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	7045923	7045924	chr10:7045924:G:T	rs56756957	G	T	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	7231559	7231560	chr10:7231560:G:A	rs2025464	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	7318436	7318437	chr10:7318437:A:G	rs117442171	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr10	7466248	7466249	chr10:7466249:C:T	rs2251884	C	T	G	Sox1.mouse_HMG_4	3	1	-	7.269639002631695	14.15705891243589	TGAGTACACATTCA
chr10	7539299	7539300	chr10:7539300:C:T	rs17430079	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr10	7547198	7547199	chr10:7547199:C:T	rs148668217	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	7547230	7547231	chr10:7547231:C:T	rs75677878	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	7580450	7580451	chr10:7580451:C:G	rs7090707	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr10	7593120	7593121	chr10:7593121:T:C	rs59495908	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr10	7593142	7593143	chr10:7593143:C:G	rs143427636	C	G	C	Sox1.mouse_HMG_4	12	1	+	4.528698208143919	-2.380056571171301	GGAAGAGCTATTCA
chr10	7797948	7797949	chr10:7797949:C:T	rs1244423	C	T	T	Sox1.mouse_HMG_4	1	1	-	6.5003713875075935	-0.4083833918076263	TGAATTCATAATCA
chr10	7887968	7887969	chr10:7887969:C:T	rs2490303	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr10	8282304	8282305	chr10:8282305:T:G	rs6602294	T	G	g	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr10	8758254	8758255	chr10:8758255:C:T	rs4749819	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr10	9357758	9357759	chr10:9357759:T:C	rs1998597	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr10	9535563	9535564	chr10:9535564:G:T	rs61841007	G	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	10150766	10150767	chr10:10150767:C:T	rs7081883	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr10	10476065	10476066	chr10:10476066:C:A	rs2245789	C	A	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr10	10526886	10526887	chr10:10526887:A:G	rs10508405	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr10	10545036	10545037	chr10:10545037:G:A	rs7071686	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr10	10631112	10631113	chr10:10631113:T:C	rs10508412	T	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr10	10657494	10657495	chr10:10657495:A:T	rs11256746	A	T	T	Sox1.mouse_HMG_4	9	1	+	7.076718476586832	0.20094934346255022	TGAATTGTAACTCA
chr10	10818202	10818203	chr10:10818203:T:C	rs117597795	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.296877145158844	3.5748603263314447	TTAATACGCATTCA
chr10	10823424	10823425	chr10:10823425:G:A	rs2038664	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.9177299383978745	8.15564277758306	GGAATAGCCATTCC
chr10	10910268	10910269	chr10:10910269:C:T	rs6602461	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr10	10931352	10931353	chr10:10931353:C:T	rs992193	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	11341024	11341025	chr10:11341025:T:C	rs12776250	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	11673418	11673419	chr10:11673419:T:C	rs1211138505	T	C	T	Sox1.mouse_HMG_4	4	1	+	8.034761832907853	5.312745014080454	TAAATATTCATTCA
chr10	11872579	11872580	chr10:11872580:A:G	rs7915210	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	12508220	12508221	chr10:12508221:A:C	rs78451158	A	C	A	Sox1.mouse_HMG_4	4	1	-	5.53700285353742	-1.3090791289611607	TGAATAGCGATGCA
chr10	12631936	12631937	chr10:12631937:G:C	rs72771756	G	C	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	12639113	12639114	chr10:12639114:T:C	rs17580343	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	12767758	12767759	chr10:12767759:C:A	rs10906220	C	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr10	12840267	12840268	chr10:12840268:T:C	rs7068717	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.765686279439627	-0.12173363036457219	GGAATATGCAGTCA
chr10	13086335	13086336	chr10:13086336:C:G	rs34476927	C	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	13489380	13489381	chr10:13489381:A:G	rs7919627	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr10	13617357	13617358	chr10:13617358:A:C	rs191616553	A	C	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr10	13741684	13741685	chr10:13741685:T:G	rs6602681	T	G	T	Sox1.mouse_HMG_4	13	1	-	9.415146168732823	5.817064618161059	TGACTACGCATTCA
chr10	13783833	13783834	chr10:13783834:C:A	rs4750414	C	A	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	13872506	13872507	chr10:13872507:C:T	rs7899899	C	T	T	Sox1.mouse_HMG_4	12	1	+	7.071897682619795	0.1631429033045746	GGAATACCCATGCA
chr10	13887129	13887130	chr10:13887130:A:C	rs751498	A	C	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr10	13922941	13922942	chr10:13922942:G:C	rs79746776	G	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr10	14093885	14093886	chr10:14093886:C:T	chr10:14093886:C:T	C	T	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr10	14390171	14390172	chr10:14390172:G:A	rs11819724	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr10	14523414	14523415	chr10:14523415:C:G	rs79560796	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr10	14549576	14549577	chr10:14549577:A:G	rs3813876	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr10	14622096	14622097	chr10:14622097:A:T	rs11259233	A	T	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	14622104	14622105	chr10:14622105:A:C	rs4750543	A	C	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	14656510	14656511	chr10:14656511:T:C	rs7922151	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.997453915754946	0.11470879977697646	CGAATGTCCAGTCA
chr10	14658749	14658750	chr10:14658750:T:C	rs72770510	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	14798716	14798717	chr10:14798717:G:A	rs7084152	G	A	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr10	14936852	14936853	chr10:14936853:C:T	rs61845571	C	T	c	Sox1.mouse_HMG_4	11	1	-	5.750070892189716	2.383810080408457	TGAACAGTCAGGCA
chr10	15141159	15141160	chr10:15141160:G:A	rs41284467	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr10	15200940	15200941	chr10:15200941:C:A	rs190768064	C	A	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	15435033	15435034	chr10:15435034:C:A	rs35165800	C	A	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	15504004	15504005	chr10:15504005:A:G	rs10752392	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	15651166	15651167	chr10:15651167:A:G	rs12220589	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	15744462	15744463	chr10:15744463:C:T	rs1361538	C	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr10	15763215	15763216	chr10:15763216:C:A	rs7909645	C	A	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	16222998	16222999	chr10:16222999:G:A	rs116185488	G	A	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr10	16545391	16545392	chr10:16545392:C:T	rs12260511	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr10	16545393	16545394	chr10:16545394:C:T	rs112798631	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr10	16663633	16663634	chr10:16663634:C:T	rs45524037	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr10	16786962	16786963	chr10:16786963:T:C	rs7088350	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr10	16911315	16911316	chr10:16911316:C:T	rs116680586	C	T	C	Sox1.mouse_HMG_4	7	1	+	4.723690265860186	4.961603105045371	TGAACAGCAATTTA
chr10	16934226	16934227	chr10:16934227:G:A	rs11591673	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	16946186	16946187	chr10:16946187:C:T	rs10904847	C	T	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr10	16965506	16965507	chr10:16965507:G:A	rs11254303	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr10	16965523	16965524	chr10:16965524:C:A	rs1687710	C	A	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr10	17017622	17017623	chr10:17017623:A:T	rs7905980	A	T	T	Sox1.mouse_HMG_4	9	1	+	4.466025411327281	-2.4097437217970015	GGAATAGCTATTGA
chr10	17028958	17028959	chr10:17028959:A:C	rs150474104	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr10	17793340	17793341	chr10:17793341:A:G	rs782199013	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr10	17815061	17815062	chr10:17815062:T:C	rs2461145	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr10	17838118	17838119	chr10:17838119:C:T	rs2477634	C	T	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	18079781	18079782	chr10:18079782:A:G	rs73591731	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr10	18401738	18401739	chr10:18401739:A:G	rs3829133	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	18668717	18668718	chr10:18668718:T:G	rs10741127	T	G	g	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr10	18689781	18689782	chr10:18689782:T:A	rs111472693	T	A	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	18886069	18886070	chr10:18886070:A:C	rs16917924	A	C	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	19071978	19071979	chr10:19071979:G:T	rs7089512	G	T	G	Sox1.mouse_HMG_4	11	1	+	7.058951980018158	10.573106082424468	TGAACAAGAATGCA
chr10	19071994	19071995	chr10:19071995:G:C	rs6481736	G	C	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	19449883	19449884	chr10:19449884:A:G	rs3904489	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr10	19762118	19762119	chr10:19762119:A:G	rs75289683	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.4047938671722715	4.166881027987089	TGTATGATCATGCA
chr10	19842684	19842685	chr10:19842685:G:C	rs6482066	G	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	20005106	20005107	chr10:20005107:G:A	rs17760485	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr10	20007963	20007964	chr10:20007964:T:C	rs11011732	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	20222295	20222296	chr10:20222296:T:G	rs11011884	T	G	T	Sox1.mouse_HMG_4	11	1	+	7.7918526178718714	4.277698515465561	TGATTATACATTCA
chr10	20289600	20289601	chr10:20289601:T:C	rs955429	T	C	T	Sox1.mouse_HMG_4	7	1	+	4.469665928527027	4.231753089341844	TGAATATTCCTTCC
chr10	20690426	20690427	chr10:20690427:T:C	rs1925549	T	C	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	20712658	20712659	chr10:20712659:T:C	rs1378153730	T	C	c	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	20768001	20768002	chr10:20768002:C:T	rs137882096	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr10	21260532	21260533	chr10:21260533:T:C	rs192231635	T	C	T	Sox1.mouse_HMG_4	10	1	-	4.559272960484211	8.070221206105485	TGAACACACAATCA
chr10	21298215	21298216	chr10:21298216:T:A	rs78507507	T	A	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	21340744	21340745	chr10:21340745:G:T	rs12252792	G	T	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	21452194	21452195	chr10:21452195:C:T	rs7074328	C	T	T	Sox1.mouse_HMG_4	4	1	+	4.035359179325822	6.757375998153221	TGACCGGCAAGTCA
chr10	21473413	21473414	chr10:21473414:G:C	rs11012717	G	C	C	Sox1.mouse_HMG_4	1	1	+	3.8739013149019588	-3.0348534644132608	TGAATGTCCTTGCA
chr10	21574921	21574922	chr10:21574922:C:G	rs527392937	C	G	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr10	22158893	22158894	chr10:22158894:T:C	rs12773425	T	C	t	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	22437896	22437897	chr10:22437897:A:G	rs16922272	A	G	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	22585897	22585898	chr10:22585898:T:C	rs7895928	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr10	22737785	22737786	chr10:22737786:G:A	rs115692036	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	23351584	23351585	chr10:23351585:C:T	rs10734044	C	T	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	23399556	23399557	chr10:23399557:T:C	rs10458696	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	23399591	23399592	chr10:23399592:T:C	rs10458697	T	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr10	23437562	23437563	chr10:23437563:C:T	rs7097167	C	T	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr10	23440634	23440635	chr10:23440635:A:G	rs549342032	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.79684899372267	4.432028106219662	TGAATATCCATTTA
chr10	23640630	23640631	chr10:23640631:C:T	rs1582120	C	T	c	Sox1.mouse_HMG_4	5	1	-	4.633052952289932	5.074832174895271	TTAACGTCCATTCA
chr10	23725471	23725472	chr10:23725472:G:T	rs12416100	G	T	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr10	23742760	23742761	chr10:23742761:G:C	rs78339313	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	23998459	23998460	chr10:23998460:A:G	rs10734049	A	G	G	Sox1.mouse_HMG_4	0	1	-	6.505169026198211	2.6036192790236132	TGAATTAGCATTGA
chr10	24354869	24354870	chr10:24354870:G:A	rs2014290	G	A	G	Sox1.mouse_HMG_4	4	1	-	3.776175663641487	6.4981924824688875	GGAACGGGCATTCC
chr10	24504386	24504387	chr10:24504387:A:G	rs7920450	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr10	24519144	24519145	chr10:24519145:C:A	chr10:24519145:C:A	C	A	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	24519155	24519156	chr10:24519156:C:A	chr10:24519156:C:A	C	A	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	24519155	24519156	chr10:24519156:C:G	rs184021413	C	G	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	24552931	24552932	chr10:24552932:A:T	rs2246694	A	T	A	Sox1.mouse_HMG_4	9	1	+	6.652929652308625	-0.2228394808156564	AGAATTCACATTCA
chr10	24935665	24935666	chr10:24935666:A:G	rs1033963	A	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr10	24947269	24947270	chr10:24947270:A:C	rs11014319	A	C	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	25068395	25068396	chr10:25068396:T:C	chr10:25068396:T:C	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	25219831	25219832	chr10:25219832:T:C	rs2807237	T	C	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	25328580	25328581	chr10:25328581:G:C	rs35832360	G	C	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr10	25391151	25391152	chr10:25391152:T:G	rs1760734	T	G	G	Sox1.mouse_HMG_4	11	1	+	3.990248883614325	0.4760947812080143	TGGATGTCCAGTCA
chr10	25705723	25705724	chr10:25705724:T:A	rs10828852	T	A	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr10	25713173	25713174	chr10:25713174:C:T	rs11014704	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	26359905	26359906	chr10:26359906:T:G	rs3006768	T	G	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr10	26359910	26359911	chr10:26359911:T:C	rs11015052	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr10	26359942	26359943	chr10:26359943:C:T	rs2184570	C	T	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr10	26571635	26571636	chr10:26571636:T:G	rs74749063	T	G	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr10	27030177	27030178	chr10:27030178:T:C	rs146808306	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	27230911	27230912	chr10:27230912:C:T	rs2040038	C	T	c	Sox1.mouse_HMG_4	6	1	+	3.267760251496327	3.7899738667365046	TGAATGCCCCTTCC
chr10	27230915	27230916	chr10:27230916:T:C	rs2800396	T	C	t	Sox1.mouse_HMG_4	10	1	+	3.267760251496327	-3.6080088816279536	TGAATGCCCCTTCC
chr10	27601742	27601743	chr10:27601743:T:C	rs6482632	T	C	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr10	27601750	27601751	chr10:27601751:A:G	rs11015898	A	G	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr10	27661956	27661957	chr10:27661957:G:A	rs2642299	G	A	A	Sox1.mouse_HMG_4	1	1	+	7.484029084827778	0.5752743055125582	TGAATTGACAGTCC
chr10	28138625	28138626	chr10:28138626:T:C	rs73608041	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.0379447357303455	0.6731238482273394	TGACTTGTCATTCT
chr10	28402626	28402627	chr10:28402627:G:A	rs17753074	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	28538913	28538914	chr10:28538914:C:T	rs34455583	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr10	28839182	28839183	chr10:28839183:G:A	rs7082918	G	A	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr10	28940540	28940541	chr10:28940541:G:T	rs12269354	G	T	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr10	29013518	29013519	chr10:29013519:G:C	rs7089414	G	C	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	29037410	29037411	chr10:29037411:T:G	rs2368947	T	G	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	29141254	29141255	chr10:29141255:G:A	rs538728293	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	29378393	29378394	chr10:29378394:T:C	rs182408101	T	C	t	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr10	29378439	29378440	chr10:29378440:T:C	rs1774929	T	C	c	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr10	29475432	29475433	chr10:29475433:G:A	rs45506291	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr10	29501859	29501860	chr10:29501860:G:A	rs12269693	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	29728118	29728119	chr10:29728119:A:G	rs7098831	A	G	A	Sox1.mouse_HMG_4	2	1	+	8.756979396930502	1.8482246176152823	TGACCAATCATTCA
chr10	29728140	29728141	chr10:29728141:C:T	rs10826684	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr10	29866238	29866239	chr10:29866239:G:A	rs16930691	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	29947501	29947502	chr10:29947502:T:C	rs2776635	T	C	T	Sox1.mouse_HMG_4	4	1	-	4.200875860703743	4.200875860703743	TGAAAGGACATTCC
chr10	30572656	30572657	chr10:30572657:G:A	rs4747713	G	A	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	31035953	31035954	chr10:31035954:T:A	rs793091	T	A	a	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	31062894	31062895	chr10:31062895:T:A	rs2793116	T	A	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr10	31124006	31124007	chr10:31124007:C:A	rs2066250	C	A	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	31165619	31165620	chr10:31165620:A:G	rs12782625	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	31186184	31186185	chr10:31186185:C:T	rs1764437	C	T	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr10	31186191	31186192	chr10:31186192:T:C	rs11008408	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.3094997360805465	1.5874829172531475	CGAATAGACAATCA
chr10	31742859	31742860	chr10:31742860:T:C	rs7896634	T	C	C	Sox1.mouse_HMG_4	8	1	-	6.496288716491589	1.1929838084325117	TGAATAGGAATACA
chr10	31757464	31757465	chr10:31757465:G:C	rs74130046	G	C	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	31757477	31757478	chr10:31757478:C:G	rs183148686	C	G	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr10	31940066	31940067	chr10:31940067:T:G	rs7912121	T	G	G	Sox1.mouse_HMG_4	2	1	-	5.374466288809519	-1.5342884905057026	TGAACAAACATTTA
chr10	31940805	31940806	chr10:31940806:C:T	rs10827001	C	T	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	32138113	32138114	chr10:32138114:G:A	rs4749709	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr10	32140999	32141000	chr10:32141000:C:A	rs3006663	C	A	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr10	32225655	32225656	chr10:32225656:G:C	rs79128219	G	C	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr10	32331688	32331689	chr10:32331689:T:C	rs3123645	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	32489421	32489422	chr10:32489422:T:C	rs73251548	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.410639831683003	-0.47210528429496623	TGACTGCACATGCA
chr10	32938000	32938001	chr10:32938001:C:T	rs116108499	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr10	32983058	32983059	chr10:32983059:T:C	rs556106902	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.371516919340536	0.49574778621625426	TTAATACTTATTCA
chr10	33035641	33035642	chr10:33035642:T:C	rs1187061	T	C	T	Sox1.mouse_HMG_4	5	1	+	10.030787418601443	7.110959008472356	TGAATTTTAATGCA
chr10	33141480	33141481	chr10:33141481:T:C	rs11009247	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr10	33392611	33392612	chr10:33392612:T:C	rs3885982	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr10	33483223	33483224	chr10:33483224:T:A	rs4934971	T	A	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	33612831	33612832	chr10:33612832:G:T	rs116810669	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	34003685	34003686	chr10:34003686:C:T	rs868358224	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr10	34047268	34047269	chr10:34047269:G:A	rs10508796	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	34137756	34137757	chr10:34137757:C:T	rs1123653	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	34637500	34637501	chr10:34637501:G:A	rs774747204	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	34770194	34770195	chr10:34770195:C:G	rs116042293	C	G	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	34795348	34795349	chr10:34795349:A:G	rs11009940	A	G	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	35216305	35216306	chr10:35216306:A:G	rs59747285	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	35421893	35421894	chr10:35421894:G:T	rs750156617	G	T	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr10	35642304	35642305	chr10:35642305:G:A	rs77625364	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr10	35767834	35767835	chr10:35767835:T:G	rs534516576	T	G	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr10	35768109	35768110	chr10:35768110:G:A	rs7922611	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	35913776	35913777	chr10:35913777:G:A	rs78677458	G	A	G	Sox1.mouse_HMG_4	1	1	+	6.679260897670447	-0.2294938816447749	AGAATTCCCATTCA
chr10	35949414	35949415	chr10:35949415:T:A	rs11010330	T	A	A	Sox1.mouse_HMG_4	0	1	+	7.248304133120672	0.38406196647028	TTAATACACATTCA
chr10	35986951	35986952	chr10:35986952:T:A	chr10:35986952:T:A	T	A	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	36086864	36086865	chr10:36086865:C:T	chr10:36086865:C:T	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr10	36115787	36115788	chr10:36115788:C:G	rs10508834	C	G	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	36349345	36349346	chr10:36349346:T:G	rs1632588	T	G	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr10	37977783	37977784	chr10:37977784:A:C	rs11011416	A	C	A	Sox1.mouse_HMG_4	13	1	+	8.096483107636917	4.4984015570651525	TGAATAAACATTAA
chr10	38070572	38070573	chr10:38070573:T:C	rs12357256	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr10	38995321	38995322	chr10:38995322:A:C	rs35514374	A	C	.	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr10	38995359	38995360	chr10:38995360:T:C	rs36192872	T	C	.	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr10	39372480	39372481	chr10:39372481:G:T	rs1713160	G	T	.	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	39456638	39456639	chr10:39456639:G:A	rs1417759390	G	A	.	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr10	41850403	41850404	chr10:41850404:C:T	rs74191960	C	T	.	Sox1.mouse_HMG_4	12	1	-	4.763388819412314	4.763388819412314	GGAATAATCATTGA
chr10	42080648	42080649	chr10:42080649:G:C	rs1311329122	G	C	.	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	42081077	42081078	chr10:42081078:G:A	rs1379719091	G	A	.	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	42081108	42081109	chr10:42081109:A:G	rs1299728585	A	G	.	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	42101707	42101708	chr10:42101708:G:C	rs1227936567	G	C	.	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr10	42617417	42617418	chr10:42617418:G:A	rs504191	G	A	a	Sox1.mouse_HMG_4	1	1	+	10.93277742049624	4.02402264118102	TGAATTGACATGCA
chr10	42617419	42617420	chr10:42617420:A:G	rs504209	A	G	a	Sox1.mouse_HMG_4	3	1	+	10.93277742049624	4.0453575106920425	TGAATTGACATGCA
chr10	42961430	42961431	chr10:42961431:G:A	rs73258299	G	A	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr10	43117160	43117161	chr10:43117161:C:T	rs2742234	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr10	43455341	43455342	chr10:43455342:G:C	rs59615405	G	C	g	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	43558136	43558137	chr10:43558137:C:T	rs2999278	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr10	43862770	43862771	chr10:43862771:C:A	rs2169200	C	A	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr10	43879450	43879451	chr10:43879451:T:C	rs7920511	T	C	C	Sox1.mouse_HMG_4	6	1	-	4.563098849392774	4.644679578820065	TGAATCACCATTTA
chr10	43924443	43924444	chr10:43924444:C:T	rs17381521	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr10	43971736	43971737	chr10:43971737:A:G	rs7904114	A	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr10	44008457	44008458	chr10:44008458:G:A	rs543044402	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr10	44047808	44047809	chr10:44047809:A:G	rs78892197	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr10	44068915	44068916	chr10:44068916:A:G	rs182075	A	G	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	44071771	44071772	chr10:44071772:T:A	rs115556617	T	A	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr10	44311794	44311795	chr10:44311795:C:T	rs7914042	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr10	44371179	44371180	chr10:44371180:G:A	rs2839696	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	44371988	44371989	chr10:44371989:T:C	rs76300950	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr10	44753104	44753105	chr10:44753105:G:T	rs111982525	G	T	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	44966358	44966359	chr10:44966359:G:A	rs147199696	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	45553813	45553814	chr10:45553814:T:A	rs957366983	T	A	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	46020180	46020181	chr10:46020181:T:G	rs74134605	T	G	T	Sox1.mouse_HMG_4	7	1	+	5.5792598044566715	4.363588731947839	TCAACAGTTATTCA
chr10	46259023	46259024	chr10:46259024:C:T	rs2999428	C	T	.	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr10	46511398	46511399	chr10:46511399:C:G	rs9702857	C	G	c	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr10	46516406	46516407	chr10:46516407:C:A	rs28648684	C	A	c	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	47013554	47013555	chr10:47013555:T:A	rs961464885	T	A	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	47013576	47013577	chr10:47013577:G:A	rs373658176	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.301882334412281	4.160851036085141	GGAACAGGCATGCA
chr10	47187085	47187086	chr10:47187086:G:T	rs117508055	G	T	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr10	47496238	47496239	chr10:47496239:C:T	rs1304773031	C	T	c	Sox1.mouse_HMG_4	7	1	+	4.029842412994183	4.267755252179366	GGAAATGCCATTCA
chr10	47873227	47873228	chr10:47873228:G:C	rs1296982607	G	C	.	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr10	48237806	48237807	chr10:48237807:T:C	rs68069145	T	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr10	48247227	48247228	chr10:48247228:G:A	rs280615	G	A	G	Sox1.mouse_HMG_4	6	1	-	3.5307080651907876	4.0529216804309645	TGAAGGCCCAGTCA
chr10	48247234	48247235	chr10:48247235:T:C	rs280616	T	C	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	48254617	48254618	chr10:48254618:C:T	rs1465605	C	T	T	Sox1.mouse_HMG_4	9	1	-	4.437599940631328	7.802420828134335	TGTATTGTCGTTCA
chr10	48444440	48444441	chr10:48444441:A:T	rs147396784	A	T	A	Sox1.mouse_HMG_4	9	1	+	8.157246318521066	1.2814771853967857	TGAATAATCATGCC
chr10	48602931	48602932	chr10:48602932:G:T	rs7915707	G	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	48692149	48692150	chr10:48692150:T:G	rs10857618	T	G	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr10	48734724	48734725	chr10:48734725:G:T	rs10776642	G	T	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	48783203	48783204	chr10:48783204:C:T	rs12780784	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	48868228	48868229	chr10:48868229:G:T	rs2663020	G	T	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr10	49147497	49147498	chr10:49147498:C:T	rs2725186	C	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr10	49225913	49225914	chr10:49225914:T:C	rs17774224	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	49257155	49257156	chr10:49257156:C:T	rs76728164	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	49263130	49263131	chr10:49263131:G:A	rs10857453	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr10	49319018	49319019	chr10:49319019:T:C	rs11101086	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr10	49319055	49319056	chr10:49319056:A:G	rs34780651	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	49396579	49396580	chr10:49396580:C:T	rs74905808	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	50016029	50016030	chr10:50016030:C:T	rs544662698	C	T	.	Sox1.mouse_HMG_4	6	1	-	4.029842412994183	3.9482616835668933	GGAAATGCCATTCA
chr10	50017564	50017565	chr10:50017565:G:T	rs56223978	G	T	.	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr10	50058333	50058334	chr10:50058334:C:G	rs1072794	C	G	.	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr10	50398622	50398623	chr10:50398623:A:G	rs1916567	A	G	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr10	50410272	50410273	chr10:50410273:G:C	rs16934269	G	C	G	Sox1.mouse_HMG_4	13	1	-	3.267760251496327	-0.01690331390987687	TGAATGCCCTTTCC
chr10	50540486	50540487	chr10:50540487:C:G	rs10826165	C	G	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr10	50593614	50593615	chr10:50593615:A:G	rs17496500	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	50671880	50671881	chr10:50671881:C:A	rs140005644	C	A	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	51083040	51083041	chr10:51083041:T:A	rs4935010	T	A	T	Sox1.mouse_HMG_4	0	1	+	6.519726650015727	-0.3445155166346634	TGAATTCCTATTCT
chr10	51083045	51083046	chr10:51083046:T:G	rs4935011	T	G	T	Sox1.mouse_HMG_4	5	1	+	6.519726650015727	6.717834520887266	TGAATTCCTATTCT
chr10	52112983	52112984	chr10:52112984:G:A	rs2219749	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	52249943	52249944	chr10:52249944:A:T	rs1194511	A	T	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	52672448	52672449	chr10:52672449:A:T	rs1443131	A	T	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	52863920	52863921	chr10:52863921:A:G	rs17588890	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	52908779	52908780	chr10:52908780:G:A	rs1935937	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	53070481	53070482	chr10:53070482:G:A	rs10762917	G	A	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr10	53315259	53315260	chr10:53315260:G:A	rs11003557	G	A	A	Sox1.mouse_HMG_4	1	1	+	4.73166222013391	-2.17709255918131	TGTATAAACAGTCA
chr10	53517743	53517744	chr10:53517744:A:G	rs7097292	A	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr10	53529102	53529103	chr10:53529103:C:G	rs7085753	C	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	53531433	53531434	chr10:53531434:A:C	rs11003667	A	C	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	54139882	54139883	chr10:54139883:G:T	rs181992255	G	T	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr10	54713098	54713099	chr10:54713099:T:A	rs17592418	T	A	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	54867225	54867226	chr10:54867226:G:A	rs994058937	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr10	55326150	55326151	chr10:55326151:C:A	rs116504353	C	A	c	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	55518270	55518271	chr10:55518271:G:A	rs10825538	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	56605654	56605655	chr10:56605655:T:C	rs1873800	T	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	56975712	56975713	chr10:56975713:G:A	rs60600285	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr10	57612721	57612722	chr10:57612722:A:C	rs2393368	A	C	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	57722871	57722872	chr10:57722872:C:T	rs76359277	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	57964623	57964624	chr10:57964624:C:T	rs112811470	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	57968233	57968234	chr10:57968234:A:C	rs2537651	A	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr10	58173616	58173617	chr10:58173617:G:T	rs1615681	G	T	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr10	58177749	58177750	chr10:58177750:A:T	rs116631979	A	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	58266664	58266665	chr10:58266665:G:T	rs7899961	G	T	G	Sox1.mouse_HMG_4	12	1	-	6.7033727141685695	-0.20538206514665114	GGAACTCTAATTCA
chr10	58458311	58458312	chr10:58458312:C:T	rs73294294	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr10	58458316	58458317	chr10:58458317:T:A	rs78591498	T	A	T	Sox1.mouse_HMG_4	9	1	-	6.869197707331973	-0.006571425792307517	TGAAAGCACATTCA
chr10	58514335	58514336	chr10:58514336:T:G	chr10:58514336:T:G	T	G	T	Sox1.mouse_HMG_4	7	1	+	8.097434629724493	6.881763557215661	TGAAGATTCATTCA
chr10	58573242	58573243	chr10:58573243:G:A	rs1658418	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr10	58573278	58573279	chr10:58573279:T:C	rs1658417	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	58645480	58645481	chr10:58645481:T:G	chr10:58645481:T:G	T	G	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	58856842	58856843	chr10:58856843:A:T	rs61861325	A	T	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr10	59243922	59243923	chr10:59243923:T:C	rs10763601	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr10	59702699	59702700	chr10:59702700:C:T	rs9651300	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	60232210	60232211	chr10:60232211:T:G	rs10821705	T	G	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	60467221	60467222	chr10:60467222:C:T	rs1572843	C	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr10	60467263	60467264	chr10:60467264:C:T	rs75020387	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	60481064	60481065	chr10:60481065:A:T	rs11816019	A	T	a	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr10	60595969	60595970	chr10:60595970:T:C	rs7477771	T	C	T	Sox1.mouse_HMG_4	10	1	-	5.113389655497874	8.624337901119148	TGAACTGTCAATCA
chr10	60989472	60989473	chr10:60989473:A:G	rs573692017	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.171713715753314	-1.7040554173709668	TAAACATTTATTCA
chr10	61761328	61761329	chr10:61761329:T:C	rs2244860	T	C	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	61838042	61838043	chr10:61838043:G:C	rs7088089	G	C	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr10	61838081	61838082	chr10:61838082:T:C	rs76721350	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr10	61909762	61909763	chr10:61909763:G:A	rs146289397	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	61971242	61971243	chr10:61971243:G:A	rs953570220	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	62243229	62243230	chr10:62243230:T:C	rs3864793	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	62377296	62377297	chr10:62377297:G:C	rs10821985	G	C	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr10	62492350	62492351	chr10:62492351:A:C	rs11813235	A	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	62654299	62654300	chr10:62654300:G:A	rs7071642	G	A	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	62779809	62779810	chr10:62779810:T:A	rs117380293	T	A	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	63605772	63605773	chr10:63605773:G:C	rs149828170	G	C	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	63682386	63682387	chr10:63682387:C:T	rs145734141	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.721868495649309	-2.186886283665913	CGAACATTCATTCC
chr10	63889875	63889876	chr10:63889876:C:T	rs960823	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr10	64627086	64627087	chr10:64627087:C:G	rs12779133	C	G	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr10	65281991	65281992	chr10:65281992:G:A	rs12571280	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr10	67270004	67270005	chr10:67270005:G:A	rs7085384	G	A	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr10	67773106	67773107	chr10:67773107:C:T	rs140429406	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	67808726	67808727	chr10:67808727:G:T	rs148702250	G	T	G	Sox1.mouse_HMG_4	6	1	+	8.091703649226538	7.6841575605231816	TGAATAGCTATACA
chr10	68179207	68179208	chr10:68179208:C:T	rs10997980	C	T	C	Sox1.mouse_HMG_4	13	1	+	8.238827047948357	4.954163482542153	TGAATAGTCATGCC
chr10	68832372	68832373	chr10:68832373:C:T	rs10762242	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	69028060	69028061	chr10:69028061:A:G	rs17472312	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	69202624	69202625	chr10:69202625:C:G	rs2279928	C	G	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr10	69470964	69470965	chr10:69470965:C:T	rs78150807	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr10	69624054	69624055	chr10:69624055:A:T	rs2812572	A	T	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr10	69968004	69968005	chr10:69968005:C:G	rs4570472	C	G	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr10	69968005	69968006	chr10:69968006:A:G	rs4578269	A	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr10	70232200	70232201	chr10:70232201:C:A	rs80349070	C	A	C	Sox1.mouse_HMG_4	7	1	-	7.226636849102378	8.44230792161121	TGAATAGGCATTGA
chr10	70279339	70279340	chr10:70279340:G:T	rs10823510	G	T	T	Sox1.mouse_HMG_4	4	1	-	4.303576284792586	0.17951112112140422	TGAACCCCCATTCC
chr10	70469468	70469469	chr10:70469469:C:T	rs140028231	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr10	70527637	70527638	chr10:70527638:T:C	rs10999375	T	C	C	Sox1.mouse_HMG_4	3	1	-	7.370491874503109	0.48307196469891056	TGAACTAAAATGCA
chr10	70666847	70666848	chr10:70666848:G:A	rs72813300	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr10	70666862	70666863	chr10:70666863:G:A	rs78234399	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.8071582542769855	4.666126955949845	AGAATAATCATTCC
chr10	70831153	70831154	chr10:70831154:C:T	rs147702720	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	70929674	70929675	chr10:70929675:A:G	rs827310	A	G	G	Sox1.mouse_HMG_4	5	1	-	4.262916176692517	1.34308776656343	TGAACTGCAGGTCA
chr10	70993401	70993402	chr10:70993402:G:T	rs10762412	G	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	71223305	71223306	chr10:71223306:C:G	rs80342704	C	G	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	71334439	71334440	chr10:71334440:G:A	rs12252139	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr10	71502373	71502374	chr10:71502374:C:A	rs946878	C	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	71504193	71504194	chr10:71504194:A:G	rs74234118	A	G	A	Sox1.mouse_HMG_4	11	1	-	4.902304594217336	-1.9781103199702337	AGAACTATTATTCA
chr10	71577322	71577323	chr10:71577323:T:C	rs11813320	T	C	T	Sox1.mouse_HMG_4	4	1	+	3.996949405583446	1.2749325867560473	GGAATTGCCAGGCA
chr10	71755111	71755112	chr10:71755112:A:G	rs77746026	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr10	72097825	72097826	chr10:72097826:A:G	rs759557004	A	G	A	Sox1.mouse_HMG_4	6	1	+	7.28515005156107	7.366730780988361	TGACTGACCATGCA
chr10	72097832	72097833	chr10:72097833:A:C	rs147703665	A	C	A	Sox1.mouse_HMG_4	13	1	+	7.28515005156107	3.6870685009893043	TGACTGACCATGCA
chr10	72216707	72216708	chr10:72216708:T:C	chr10:72216708:T:C	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	72216712	72216713	chr10:72216713:G:T	rs73276919	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	72355299	72355300	chr10:72355300:A:G	rs78415942	A	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	72355320	72355321	chr10:72355321:C:T	rs189887317	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.315015719909668	8.037032538737066	TGAACAGATATTGA
chr10	72676821	72676822	chr10:72676822:G:A	rs190614279	G	A	.	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr10	72687033	72687034	chr10:72687034:C:T	rs2166335	C	T	.	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	73110423	73110424	chr10:73110424:G:A	chr10:73110424:G:A	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	73110435	73110436	chr10:73110436:G:C	rs374293200	G	C	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	73993388	73993389	chr10:73993389:T:C	rs774092885	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	74121588	74121589	chr10:74121589:G:T	rs3180427	G	T	G	Sox1.mouse_HMG_4	12	1	-	8.204395082426029	1.295640303110808	TTAATAGCCATTCA
chr10	74655750	74655751	chr10:74655751:G:T	rs1538311	G	T	.	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	74949378	74949379	chr10:74949379:G:A	rs11001216	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr10	74949389	74949390	chr10:74949390:C:G	rs755294560	C	G	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	74958116	74958117	chr10:74958117:T:A	rs11001222	T	A	T	Sox1.mouse_HMG_4	9	1	-	8.492735312383498	1.6169661792592176	TGACCAAACATTCA
chr10	75383708	75383709	chr10:75383709:A:G	rs1897191	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	75620688	75620689	chr10:75620689:C:T	rs7895659	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	75694953	75694954	chr10:75694954:C:T	rs74696323	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	75694954	75694955	chr10:75694955:A:G	rs7911113	A	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	75770613	75770614	chr10:75770614:T:C	rs556906953	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	76115311	76115312	chr10:76115312:T:C	rs2164369	T	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr10	76115356	76115357	chr10:76115357:G:A	rs10824368	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	76378245	76378246	chr10:76378246:C:T	rs12356246	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr10	76403453	76403454	chr10:76403454:C:T	rs11596247	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr10	76409093	76409094	chr10:76409094:G:A	rs12774333	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	76492284	76492285	chr10:76492285:G:C	rs73292569	G	C	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr10	77332336	77332337	chr10:77332337:A:C	chr10:77332337:A:C	A	C	A	Sox1.mouse_HMG_4	11	1	-	7.835406474325273	4.321252371918963	TGAATTGTCACTCA
chr10	77392785	77392786	chr10:77392786:A:C	rs12221259	A	C	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	77589473	77589474	chr10:77589474:T:A	rs938225	T	A	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr10	77591983	77591984	chr10:77591984:G:A	rs16935116	G	A	G	Sox1.mouse_HMG_4	12	1	-	3.9425112555841197	-2.9662435237311007	TGAACTCCCAGGCA
chr10	77797478	77797479	chr10:77797479:C:T	rs2812423	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr10	77979841	77979842	chr10:77979842:A:T	rs4979937	A	T	A	Sox1.mouse_HMG_4	5	1	+	6.2430642714532025	5.603177177976327	TGACTACAAAGTCA
chr10	78220283	78220284	chr10:78220284:A:G	rs1249153	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr10	78349444	78349445	chr10:78349445:A:G	rs11002515	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	78349461	78349462	chr10:78349462:T:C	rs890687	T	C	C	Sox1.mouse_HMG_4	11	1	+	4.698380608319506	-2.182034305868063	TGAAAGGTCAGTCA
chr10	78537794	78537795	chr10:78537795:T:C	rs2593151	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.405679343781097	-0.4770657721968723	GGAATTCACATGCA
chr10	78540220	78540221	chr10:78540221:T:G	rs1865265	T	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	78543791	78543792	chr10:78543792:G:C	rs16936045	G	C	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr10	78657003	78657004	chr10:78657004:C:A	rs12268217	C	A	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr10	78674775	78674776	chr10:78674776:G:A	rs252827	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	78796346	78796347	chr10:78796347:C:G	rs78475104	C	G	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr10	78865712	78865713	chr10:78865713:T:C	chr10:78865713:T:C	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.556067103699175	-2.3266780122787942	TGAACACACAGGCA
chr10	78865734	78865735	chr10:78865735:C:T	rs74144016	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr10	78986206	78986207	chr10:78986207:C:T	rs78829965	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	79017809	79017810	chr10:79017810:T:C	rs1371104	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.1130266833594815	-2.774393226444718	TGAAGTGCCATGCA
chr10	79028234	79028235	chr10:79028235:G:T	rs60184910	G	T	G	Sox1.mouse_HMG_4	11	1	+	4.185062395290098	7.699216497696408	AGAATGAACATGCA
chr10	79028238	79028239	chr10:79028239:G:A	rs77962260	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	79448828	79448829	chr10:79448829:A:C	rs79421183	A	C	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	79922883	79922884	chr10:79922884:C:T	rs41314475	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr10	79922888	79922889	chr10:79922889:A:G	rs1054053	A	G	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	79939481	79939482	chr10:79939482:G:A	rs2245121	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr10	80146627	80146628	chr10:80146628:G:T	rs2152546	G	T	G	Sox1.mouse_HMG_4	12	1	-	4.722653187067458	-2.1861015922477627	TGAAACATTATTCA
chr10	80148127	80148128	chr10:80148128:A:T	rs2789679	A	T	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr10	80290889	80290890	chr10:80290890:G:A	rs55899456	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr10	80495294	80495295	chr10:80495295:C:T	rs78786423	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr10	80702778	80702779	chr10:80702779:C:T	rs73294406	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	80720343	80720344	chr10:80720344:C:T	rs7913282	C	T	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr10	80761317	80761318	chr10:80761318:T:C	rs4934479	T	C	C	Sox1.mouse_HMG_4	8	1	+	5.315015719909668	5.456047018236808	TCAACAGATATTCA
chr10	82473227	82473228	chr10:82473228:C:T	rs117670971	C	T	c	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr10	82918303	82918304	chr10:82918304:A:C	rs576966	A	C	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	83394262	83394263	chr10:83394263:C:A	rs56822585	C	A	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	84047605	84047606	chr10:84047606:C:T	rs7097734	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.262359898262785	4.180779168835495	TGAAGTGCCAGTCA
chr10	84088820	84088821	chr10:84088821:A:T	rs11200841	A	T	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr10	84415849	84415850	chr10:84415850:T:A	rs10788341	T	A	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr10	84633343	84633344	chr10:84633344:G:T	rs74147436	G	T	G	Sox1.mouse_HMG_4	7	1	-	4.509794846191952	4.483463600830131	AGAATAGCTATTCC
chr10	84907499	84907500	chr10:84907500:C:G	rs10749502	C	G	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	85159399	85159400	chr10:85159400:C:G	rs10887452	C	G	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	85164498	85164499	chr10:85164499:C:T	rs7901296	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr10	85464990	85464991	chr10:85464991:C:A	rs66663074	C	A	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	85490710	85490711	chr10:85490711:A:C	rs66882125	A	C	a	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr10	85924923	85924924	chr10:85924924:T:C	rs2352099	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	86070939	86070940	chr10:86070940:T:C	rs75995763	T	C	C	Sox1.mouse_HMG_4	11	1	+	7.289309645919019	0.4088947317314495	TGAAAAGGCATTCA
chr10	86165823	86165824	chr10:86165824:G:A	chr10:86165824:G:A	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr10	86351034	86351035	chr10:86351035:T:C	rs10887582	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr10	86753160	86753161	chr10:86753161:C:T	rs58334200	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr10	87072472	87072473	chr10:87072473:A:T	rs9420432	A	T	a	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	87594109	87594110	chr10:87594110:C:A	rs190470896	C	A	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr10	88281858	88281859	chr10:88281859:T:C	rs80202096	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	88455871	88455872	chr10:88455872:T:C	rs6586139	T	C	C	Sox1.mouse_HMG_4	9	1	-	3.2920383936017528	-0.07278249390125402	TGAGTGGGCATGCA
chr10	88676443	88676444	chr10:88676444:C:T	rs1432444	C	T	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	88848759	88848760	chr10:88848760:T:C	rs76240008	T	C	t	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	88941719	88941720	chr10:88941720:C:T	rs79127111	C	T	T	Sox1.mouse_HMG_4	4	1	+	4.959018311566001	7.6810351303934	TTAACGACCATTCA
chr10	89023215	89023216	chr10:89023216:A:G	rs10887883	A	G	g	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr10	89186103	89186104	chr10:89186104:A:T	rs10887928	A	T	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	89242216	89242217	chr10:89242217:A:G	rs869820	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	89352016	89352017	chr10:89352017:C:T	rs145986066	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr10	89352022	89352023	chr10:89352023:C:T	rs4378299	C	T	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr10	89393941	89393942	chr10:89393942:T:C	rs303217	T	C	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr10	89556715	89556716	chr10:89556716:C:T	rs67539223	C	T	C	Sox1.mouse_HMG_4	12	1	+	5.401899359477255	-1.5068554198379651	TGAACAGACAGTCC
chr10	89837162	89837163	chr10:89837163:T:G	rs7076219	T	G	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr10	89837188	89837189	chr10:89837189:G:C	rs68147789	G	C	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr10	89921403	89921404	chr10:89921404:T:C	rs1616391	T	C	T	Sox1.mouse_HMG_4	2	1	-	7.079015723098442	0.17026094378322054	GGAACACAAATTCA
chr10	90129771	90129772	chr10:90129772:G:A	rs35784625	G	A	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr10	90278803	90278804	chr10:90278804:C:G	rs1326846	C	G	G	Sox1.mouse_HMG_4	1	1	-	4.526287314293271	-2.382467465021948	TGAACACACATTTA
chr10	90574159	90574160	chr10:90574160:T:C	rs61859288	T	C	T	Sox1.mouse_HMG_4	5	1	-	6.489616135382229	6.04783691277689	TAAATACAAATTCA
chr10	90921201	90921202	chr10:90921202:T:G	rs1049659603	T	G	T	Sox1.mouse_HMG_4	0	1	+	10.70554796817443	7.108209595402823	TGAATTTTCATTCC
chr10	90970474	90970475	chr10:90970475:C:T	rs11597992	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.539189125840555	-2.369565653474665	AGAATGGTTAGTCA
chr10	90970490	90970491	chr10:90970491:C:A	rs7088999	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr10	90971959	90971960	chr10:90971960:C:T	rs145455752	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	91159330	91159331	chr10:91159331:G:T	rs11186475	G	T	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	91300460	91300461	chr10:91300461:C:T	rs3890159	C	T	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	91596614	91596615	chr10:91596615:T:C	rs10509629	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	92308607	92308608	chr10:92308608:G:C	rs10748577	G	C	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	92418987	92418988	chr10:92418988:C:T	rs74151633	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	92575020	92575021	chr10:92575021:A:C	rs3758505	A	C	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr10	92644162	92644163	chr10:92644163:G:A	rs77464338	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr10	92806026	92806027	chr10:92806027:G:T	rs2422067	G	T	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr10	92957816	92957817	chr10:92957817:C:G	rs7914459	C	G	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	92981227	92981228	chr10:92981228:A:C	rs10509648	A	C	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr10	93071379	93071380	chr10:93071380:G:C	rs117001522	G	C	G	Sox1.mouse_HMG_4	5	1	+	4.031103610728539	0.913167329727915	GGAACGCACGTTCA
chr10	93174338	93174339	chr10:93174339:G:T	rs11187309	G	T	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	93174526	93174527	chr10:93174527:C:T	rs117738100	C	T	C	Sox1.mouse_HMG_4	6	1	+	10.117941317058945	10.64015493229912	GGAATGCACATTCA
chr10	93245217	93245218	chr10:93245218:T:C	rs10882195	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.708899945380751	0.8261548294027818	TGACTAAATAGTCA
chr10	93262537	93262538	chr10:93262538:T:C	rs11187352	T	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	93294041	93294042	chr10:93294042:G:A	rs35317001	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr10	93502371	93502372	chr10:93502372:G:C	rs6583894	G	C	C	Sox1.mouse_HMG_4	11	1	+	7.919333479335885	4.553072667554625	TGAATAACCATGCC
chr10	93630116	93630117	chr10:93630117:G:A	rs72822871	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.210400126981309	-2.6983546523339106	TGAAGACTCAGTCA
chr10	93630118	93630119	chr10:93630119:C:T	rs10882288	C	T	T	Sox1.mouse_HMG_4	10	1	-	4.210400126981309	0.6994518813600348	TGAAGACTCAGTCA
chr10	93751451	93751452	chr10:93751452:A:T	rs75061874	A	T	A	Sox1.mouse_HMG_4	4	1	-	7.039103005404732	0.19302102290614997	GGAATGGTAATGCA
chr10	93916913	93916914	chr10:93916914:A:G	chr10:93916914:A:G	A	G	A	Sox1.mouse_HMG_4	6	1	-	5.171713715753314	4.649500100513136	TAAACATTTATTCA
chr10	94036343	94036344	chr10:94036344:A:G	rs143635041	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr10	94539993	94539994	chr10:94539994:G:A	rs1977291	G	A	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr10	94581578	94581579	chr10:94581579:A:C	rs12220588	A	C	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	94647555	94647556	chr10:94647556:G:A	rs34582766	G	A	g	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	94647594	94647595	chr10:94647595:T:C	rs7089349	T	C	t	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	95573700	95573701	chr10:95573701:G:A	rs12354465	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr10	95712167	95712168	chr10:95712168:T:C	rs12244559	T	C	t	Sox1.mouse_HMG_4	9	1	-	4.46502014746374	1.100199259960732	TGAATATTCATACC
chr10	95745520	95745521	chr10:95745521:C:T	rs1891535	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr10	95772290	95772291	chr10:95772291:A:G	rs74517023	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr10	96118711	96118712	chr10:96118712:A:T	rs61858649	A	T	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr10	96128994	96128995	chr10:96128995:C:T	rs1172960	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr10	96129558	96129559	chr10:96129559:A:G	rs139451872	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	96366875	96366876	chr10:96366876:T:G	rs73324504	T	G	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr10	96411765	96411766	chr10:96411766:C:G	rs74515452	C	G	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr10	96585916	96585917	chr10:96585917:T:C	rs114286345	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr10	96622545	96622546	chr10:96622546:A:G	rs9633706	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.524456302581629	0.622906555407029	TGAATGGTTGGGCA
chr10	97210906	97210907	chr10:97210907:G:A	rs1147598	G	A	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	97676910	97676911	chr10:97676911:A:G	rs186763685	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	98316596	98316597	chr10:98316597:A:G	rs4919207	A	G	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	98587692	98587693	chr10:98587693:T:C	rs6584214	T	C	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	99599388	99599389	chr10:99599389:T:C	rs1246386478	T	C	T	Sox1.mouse_HMG_4	11	1	+	7.3153740504173275	0.43495913622975735	GGAATAATAATTCC
chr10	99628433	99628434	chr10:99628434:T:A	rs1035214	T	A	t	Sox1.mouse_HMG_4	9	1	-	15.005237886952138	8.129468753827856	TGAATAAACATTCA
chr10	99709951	99709952	chr10:99709952:G:T	chr10:99709952:G:T	G	T	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr10	100100669	100100670	chr10:100100670:C:T	rs552187685	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	100103652	100103653	chr10:100103653:C:A	rs7474634	C	A	C	Sox1.mouse_HMG_4	4	1	+	4.755537437903144	0.6314722742319638	TGAACGACCATGCC
chr10	100382663	100382664	chr10:100382664:T:C	rs10883466	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.360361153530076	-2.522383962447893	GGAATCACCATGCA
chr10	100382676	100382677	chr10:100382677:C:T	rs10883467	C	T	C	Sox1.mouse_HMG_4	0	1	-	4.360361153530076	1.0934573596512946	GGAATCACCATGCA
chr10	100501651	100501652	chr10:100501652:G:C	rs4604805	G	C	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	100532171	100532172	chr10:100532172:G:A	rs191811134	G	A	G	Sox1.mouse_HMG_4	13	1	-	8.625688948653123	5.341025383246919	TGAACAGATATTCC
chr10	100741813	100741814	chr10:100741814:C:T	rs4509693	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr10	100907520	100907521	chr10:100907521:A:T	rs10883559	A	T	T	Sox1.mouse_HMG_4	7	1	+	4.928804500717332	5.193048585264337	TGAGCATATATTCA
chr10	101002369	101002370	chr10:101002370:A:G	rs701835	A	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	101558982	101558983	chr10:101558983:G:A	rs76821280	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	102604465	102604466	chr10:102604466:A:G	rs74854733	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	102641780	102641781	chr10:102641781:A:T	rs530209439	A	T	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr10	102689686	102689687	chr10:102689687:C:T	rs11191368	C	T	c	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr10	102725543	102725544	chr10:102725544:G:A	rs12775883	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	102740006	102740007	chr10:102740007:C:T	rs7092723	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr10	102763260	102763261	chr10:102763261:C:T	rs11191389	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	102819498	102819499	chr10:102819499:A:G	rs56119742	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr10	102838848	102838849	chr10:102838849:G:C	rs10786714	G	C	G	Sox1.mouse_HMG_4	8	1	-	4.222130512052558	-1.8398623937449605	TAAATGGACATGCA
chr10	102963333	102963334	chr10:102963334:T:C	rs7073179	T	C	.	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr10	103181495	103181496	chr10:103181496:T:G	rs193280326	T	G	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr10	103279821	103279822	chr10:103279822:A:G	rs1163086	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	103548131	103548132	chr10:103548132:T:C	rs55928628	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr10	103672675	103672676	chr10:103672676:C:A	rs3781338	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	103769008	103769009	chr10:103769009:G:A	rs11191799	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	104123448	104123449	chr10:104123449:G:T	rs76224672	G	T	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	104310415	104310416	chr10:104310416:T:C	rs116453107	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.505169026198213	2.6036192790236132	TGTATTAGCATTCA
chr10	104350589	104350590	chr10:104350590:G:C	rs6584596	G	C	C	Sox1.mouse_HMG_4	10	1	+	3.7272829770703533	0.2163347314490791	TGATTGCTCAGTCA
chr10	104540637	104540638	chr10:104540638:T:C	rs73340971	T	C	t	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr10	105982906	105982907	chr10:105982907:T:C	rs1361961831	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.723690265860186	-2.159054850117783	TTAACAGCAATTCA
chr10	106219276	106219277	chr10:106219277:T:C	rs2025733	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr10	106966089	106966090	chr10:106966090:T:C	rs11193135	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.299575840249643	3.5775590214222435	CGAATGCACATGCA
chr10	106966105	106966106	chr10:106966106:T:C	rs719965	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	107019675	107019676	chr10:107019676:G:T	rs932860	G	T	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr10	107133806	107133807	chr10:107133807:T:C	rs864262	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr10	107245473	107245474	chr10:107245474:T:G	rs7069052	T	G	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr10	107409690	107409691	chr10:107409691:G:A	rs375756022	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr10	107424104	107424105	chr10:107424105:G:A	rs7099573	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr10	107620765	107620766	chr10:107620766:G:C	rs10884483	G	C	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	107689819	107689820	chr10:107689820:T:C	rs12241966	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr10	107748290	107748291	chr10:107748291:T:C	rs35356847	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr10	107748318	107748319	chr10:107748319:C:T	rs6584824	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	107889321	107889322	chr10:107889322:C:T	rs1424604	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	108360158	108360159	chr10:108360159:C:G	rs883000	C	G	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	108411674	108411675	chr10:108411675:C:T	rs77669911	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	108411685	108411686	chr10:108411686:C:T	rs1754617	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr10	109977507	109977508	chr10:109977508:C:T	rs111325286	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	110075957	110075958	chr10:110075958:A:G	rs182651680	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr10	110326188	110326189	chr10:110326189:T:C	rs143975479	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.397794972317683	-2.489624937486515	TCAATGGCCAGTCA
chr10	110462550	110462551	chr10:110462551:T:C	rs11195142	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	110482231	110482232	chr10:110482232:A:G	rs150127169	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr10	110547394	110547395	chr10:110547395:T:C	rs12247232	T	C	T	Sox1.mouse_HMG_4	3	1	-	3.9839573168413835	-2.9034625929628133	CGAATGGTTATTCT
chr10	110547413	110547414	chr10:110547414:T:G	rs12355893	T	G	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	110552083	110552084	chr10:110552084:A:G	rs11195177	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr10	110641639	110641640	chr10:110641640:A:G	rs11594629	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr10	110641659	110641660	chr10:110641660:T:C	rs6585002	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	110775318	110775319	chr10:110775319:T:C	rs2078243	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	110804525	110804526	chr10:110804526:C:G	rs11594287	C	G	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr10	111107653	111107654	chr10:111107654:C:T	rs1556716	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr10	111482433	111482434	chr10:111482434:G:A	rs2900932	G	A	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr10	111567504	111567505	chr10:111567505:T:G	rs7905975	T	G	T	Sox1.mouse_HMG_4	10	1	+	4.7450251353712085	1.3802042478682022	TGAGCAGCAATTCA
chr10	111916839	111916840	chr10:111916840:A:C	rs656385	A	C	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	112209159	112209160	chr10:112209160:T:C	rs116292370	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	112332282	112332283	chr10:112332283:C:T	rs73361388	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr10	112628573	112628574	chr10:112628574:T:A	rs12412059	T	A	A	Sox1.mouse_HMG_4	9	1	-	5.259766235844201	-1.616002897280082	TGAACAACTATTAA
chr10	113049142	113049143	chr10:113049143:G:T	rs12255372	G	T	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr10	113218802	113218803	chr10:113218803:C:T	rs17130209	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr10	113856145	113856146	chr10:113856146:G:T	rs1180821932	G	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	113897390	113897391	chr10:113897391:G:C	rs10787508	G	C	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr10	114331959	114331960	chr10:114331960:C:T	rs72826914	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr10	114434450	114434451	chr10:114434451:G:A	rs3802734	G	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr10	114536567	114536568	chr10:114536568:C:T	rs4128920	C	T	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr10	114536576	114536577	chr10:114536577:G:A	rs4514325	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	114631183	114631184	chr10:114631184:G:A	rs117961105	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr10	114657051	114657052	chr10:114657052:T:C	rs35505004	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr10	114729546	114729547	chr10:114729547:G:A	rs4752147	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr10	114864984	114864985	chr10:114864985:A:C	chr10:114864985:A:C	A	C	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	115860295	115860296	chr10:115860296:A:G	rs10885821	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr10	116179025	116179026	chr10:116179026:C:T	rs2420246	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr10	116471063	116471064	chr10:116471064:G:A	rs2217632	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	116709045	116709046	chr10:116709046:C:T	rs182389242	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr10	116725550	116725551	chr10:116725551:G:T	rs7906171	G	T	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	116726423	116726424	chr10:116726424:C:T	rs1867988	C	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr10	117229650	117229651	chr10:117229651:G:A	rs363324	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr10	117273944	117273945	chr10:117273945:T:A	rs3523	T	A	T	Sox1.mouse_HMG_4	10	1	+	5.646248168242496	-1.229520964881785	TGAATTCAAATGCC
chr10	117609130	117609131	chr10:117609131:G:A	rs115387156	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	118127296	118127297	chr10:118127297:C:T	rs4752142	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	118220075	118220076	chr10:118220076:A:C	rs188666623	A	C	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr10	118220109	118220110	chr10:118220110:G:A	rs1638639	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr10	118221035	118221036	chr10:118221036:G:T	rs188730346	G	T	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	118304679	118304680	chr10:118304680:T:C	rs4752150	T	C	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr10	118408076	118408077	chr10:118408077:A:G	rs10787829	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr10	118408090	118408091	chr10:118408091:G:A	rs1246889	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	118458664	118458665	chr10:118458665:A:C	rs10886254	A	C	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr10	118467044	118467045	chr10:118467045:G:A	rs189193472	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr10	118669722	118669723	chr10:118669723:G:A	rs12767451	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	119023093	119023094	chr10:119023094:C:T	rs2420492	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	119500504	119500505	chr10:119500505:C:T	rs756278	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr10	119668912	119668913	chr10:119668913:G:A	rs196324	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	119668929	119668930	chr10:119668930:T:C	rs189499827	T	C	T	Sox1.mouse_HMG_4	8	1	+	6.936194875597438	7.077226173924578	GGAATTTATAGTCA
chr10	119680960	119680961	chr10:119680961:A:G	rs35600085	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr10	119979099	119979100	chr10:119979100:A:G	rs12783897	A	G	A	Sox1.mouse_HMG_4	11	1	-	4.508951190633223	-2.3714637235543465	TGAATCACCAGTCC
chr10	120077772	120077773	chr10:120077773:C:T	rs10886590	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	120115243	120115244	chr10:120115244:C:T	rs4237517	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr10	120390563	120390564	chr10:120390564:C:T	rs10788079	C	T	C	Sox1.mouse_HMG_4	10	1	-	10.363024652211232	6.852076406589958	TGAATATGCAGTCA
chr10	120416466	120416467	chr10:120416467:A:G	rs2420717	A	G	G	Sox1.mouse_HMG_4	5	1	+	4.47766389078648	4.035884668181141	TGAATAAGGATGCA
chr10	120510613	120510614	chr10:120510614:G:A	rs12769643	G	A	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr10	120917488	120917489	chr10:120917489:C:T	rs4751807	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr10	120975030	120975031	chr10:120975031:A:G	rs1897195	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	121113244	121113245	chr10:121113245:T:C	rs2918605	T	C	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr10	121253056	121253057	chr10:121253057:G:A	rs74658313	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr10	121262374	121262375	chr10:121262375:T:C	rs7094569	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.394874739430977	0.519105606306695	TGGATTTTCATTCA
chr10	121263797	121263798	chr10:121263798:A:G	rs4751833	A	G	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr10	121333667	121333668	chr10:121333668:G:A	rs9420318	G	A	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr10	121403149	121403150	chr10:121403150:T:G	rs77847719	T	G	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	121415048	121415049	chr10:121415049:T:A	rs7094364	T	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr10	121418395	121418396	chr10:121418396:C:T	rs57247869	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	121469530	121469531	chr10:121469531:C:T	rs117664527	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	121887297	121887298	chr10:121887298:A:C	rs147925585	A	C	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	122296607	122296608	chr10:122296608:C:T	chr10:122296608:C:T	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr10	122353282	122353283	chr10:122353283:C:T	rs7074542	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr10	122465399	122465400	chr10:122465400:G:T	rs2248929	G	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr10	122502244	122502245	chr10:122502245:A:G	rs558172992	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.40079753417134	-1.4749715989529417	TCAACAACCATTCA
chr10	122508880	122508881	chr10:122508881:G:A	rs79778361	G	A	g	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr10	122508884	122508885	chr10:122508885:C:G	rs2672585	C	G	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr10	122620941	122620942	chr10:122620942:G:A	rs3740225	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr10	123134522	123134523	chr10:123134523:C:T	rs953635703	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr10	123464743	123464744	chr10:123464744:A:G	rs705142	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr10	124021441	124021442	chr10:124021442:C:T	rs9422312	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	124100780	124100781	chr10:124100781:A:G	rs7092879	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr10	124155439	124155440	chr10:124155440:A:G	rs1163155645	A	G	a	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	124164364	124164365	chr10:124164365:T:C	rs36144615	T	C	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr10	124174694	124174695	chr10:124174695:C:G	rs1015089124	C	G	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	124288669	124288670	chr10:124288670:G:T	rs73374300	G	T	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr10	124409784	124409785	chr10:124409785:A:G	rs1399930	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr10	124961379	124961380	chr10:124961380:T:A	rs76972397	T	A	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr10	125000828	125000829	chr10:125000829:T:C	rs4962413	T	C	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	125002091	125002092	chr10:125002092:C:T	rs58796909	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr10	125063412	125063413	chr10:125063413:C:T	rs116747996	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	125149216	125149217	chr10:125149217:C:T	rs79157201	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	125214498	125214499	chr10:125214499:C:T	rs11245545	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr10	125385490	125385491	chr10:125385491:C:T	rs12776234	C	T	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr10	125524708	125524709	chr10:125524709:T:C	rs145803594	T	C	T	Sox1.mouse_HMG_4	8	1	+	6.79182214859604	6.932853446923181	TGACTGTATATGCA
chr10	125524732	125524733	chr10:125524733:T:C	rs4962309	T	C	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	125535174	125535175	chr10:125535175:T:C	rs1529751	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr10	125984436	125984437	chr10:125984437:T:C	rs73370528	T	C	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	125984457	125984458	chr10:125984458:A:G	rs73370532	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.670449401560549	-2.2122957144174205	TGAACAACAATCCA
chr10	126034776	126034777	chr10:126034777:T:C	rs10751539	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr10	126054671	126054672	chr10:126054672:G:A	rs75911726	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr10	126153862	126153863	chr10:126153863:C:T	rs4272714	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr10	126158044	126158045	chr10:126158045:G:T	rs10901542	G	T	G	Sox1.mouse_HMG_4	4	1	-	5.259340533121059	1.135275369449878	GGAACATTCGTTCA
chr10	126228732	126228733	chr10:126228733:C:T	rs4962520	C	T	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	126259668	126259669	chr10:126259669:T:C	rs6597754	T	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr10	126314028	126314029	chr10:126314029:G:A	rs11244953	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr10	126619255	126619256	chr10:126619256:A:G	rs2164583	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr10	126674416	126674417	chr10:126674417:T:C	rs11245088	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.635707811502866	-2.251712098301332	TCAATGGTCAGTCA
chr10	126781578	126781579	chr10:126781579:G:A	rs10901703	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	126836481	126836482	chr10:126836482:G:A	rs10901722	G	A	G	Sox1.mouse_HMG_4	12	1	-	3.768649230416595	-3.1401055488986254	TGACTGGCCATGCC
chr10	126973613	126973614	chr10:126973614:C:T	rs4075924	C	T	C	Sox1.mouse_HMG_4	5	1	-	7.566996204436639	8.008775427041977	GGAACGGAAATTCA
chr10	127243276	127243277	chr10:127243277:A:C	rs7077776	A	C	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	127374463	127374464	chr10:127374464:C:G	rs55893294	C	G	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr10	127702653	127702654	chr10:127702654:A:G	rs4751476	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.788343511362201	0.8867937641876011	TGAACTGCCGTTCC
chr10	127823476	127823477	chr10:127823477:G:A	rs11018330	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr10	127847292	127847293	chr10:127847293:G:T	rs67370653	G	T	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr10	127849936	127849937	chr10:127849937:C:A	rs12260650	C	A	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr10	127889710	127889711	chr10:127889711:G:A	rs76114116	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	127889712	127889713	chr10:127889713:G:A	rs145775106	G	A	g	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	127977095	127977096	chr10:127977096:C:T	rs7475525	C	T	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr10	127977106	127977107	chr10:127977107:T:C	rs12254339	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr10	128061193	128061194	chr10:128061194:A:T	rs4332435	A	T	T	Sox1.mouse_HMG_4	4	1	-	9.160402270648808	2.3143202881502267	TGAATTCAAATTCC
chr10	128387270	128387271	chr10:128387271:A:G	rs11016216	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.084695461951366	0.2089263288270864	TGACTTGCCATTCC
chr10	128483690	128483691	chr10:128483691:A:G	rs957807	A	G	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr10	128681322	128681323	chr10:128681323:T:C	rs11016427	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr10	128681338	128681339	chr10:128681339:G:A	rs11594651	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr10	128722294	128722295	chr10:128722295:G:A	chr10:128722295:G:A	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr10	128729199	128729200	chr10:128729200:G:A	rs1555928	G	A	G	Sox1.mouse_HMG_4	4	1	-	7.5054400139586654	10.227456832786062	TGAACGCCCATGCA
chr10	129061801	129061802	chr10:129061802:G:A	rs77864537	G	A	G	Sox1.mouse_HMG_4	0	1	-	5.456960394345745	9.358510141520346	CGAATGCAAATTCC
chr10	129118041	129118042	chr10:129118042:C:T	rs10829573	C	T	C	Sox1.mouse_HMG_4	8	1	+	5.104611964301173	4.9635806659740345	TGAACATCCAGGCA
chr10	129180603	129180604	chr10:129180604:G:A	rs6482724	G	A	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr10	129180641	129180642	chr10:129180642:C:T	rs116582502	C	T	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr10	129221501	129221502	chr10:129221502:G:C	rs72831413	G	C	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr10	129327102	129327103	chr10:129327103:T:C	rs12356452	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr10	129346000	129346001	chr10:129346001:C:G	rs7916192	C	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr10	129517837	129517838	chr10:129517838:G:A	rs76291463	G	A	g	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr10	129581014	129581015	chr10:129581015:A:T	rs79356478	A	T	A	Sox1.mouse_HMG_4	10	1	-	6.2413170383198775	-0.6344520948044041	GGAATCCAAATTCA
chr10	129925058	129925059	chr10:129925059:A:C	rs528090607	A	C	-	Sox1.mouse_HMG_4	10	1	+	4.114084859916357	4.114084859916357	TGAATGGATAAGCA
chr10	129991690	129991691	chr10:129991691:G:A	rs7907202	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr10	130426560	130426561	chr10:130426561:C:T	rs4750807	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr10	130607652	130607653	chr10:130607653:A:G	rs6482814	A	G	G	Sox1.mouse_HMG_4	13	1	+	3.9340663356892405	-2.948678780288729	TGAGCTCCCATTCA
chr10	130838829	130838830	chr10:130838830:C:A	rs4751280	C	A	c	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr10	130864195	130864196	chr10:130864196:T:C	rs73386153	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr10	130949393	130949394	chr10:130949394:C:T	rs3125595	C	T	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	130956587	130956588	chr10:130956588:C:T	rs10829855	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr10	130956971	130956972	chr10:130956972:T:C	rs10765007	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr10	130958907	130958908	chr10:130958908:A:G	rs75226236	A	G	A	Sox1.mouse_HMG_4	2	1	-	4.405696860857842	4.405696860857842	TGTATATACAGTCA
chr10	131181869	131181870	chr10:131181870:C:T	rs2918162	C	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr10	131196071	131196072	chr10:131196072:C:A	rs7084141	C	A	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr10	131196782	131196783	chr10:131196783:A:C	rs11597694	A	C	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr10	131200013	131200014	chr10:131200014:T:C	rs61861199	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.227950283865721	0.8631293963627142	GGAAGGGCCATTCA
chr10	131200021	131200022	chr10:131200022:C:T	rs149236114	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.227950283865721	-2.6808044954494967	GGAAGGGCCATTCA
chr10	131250794	131250795	chr10:131250795:A:C	rs11017842	A	C	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr10	131315945	131315946	chr10:131315946:T:C	rs7080842	T	C	C	Sox1.mouse_HMG_4	6	1	+	6.207543532049795	5.685329916809617	TGAATTTGCATCCA
chr10	131574391	131574392	chr10:131574392:G:T	rs3935349	G	T	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr10	131587093	131587094	chr10:131587094:C:T	rs936607100	C	T	C	Sox1.mouse_HMG_4	5	1	+	3.729594142313055	6.649422552442142	TGAAGCGGCATTCA
chr10	131757817	131757818	chr10:131757818:C:A	rs374284192	C	A	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr10	131787437	131787438	chr10:131787438:G:A	rs145155559	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr10	132116353	132116354	chr10:132116354:C:T	rs60251740	C	T	C	Sox1.mouse_HMG_4	0	1	+	10.255509165261293	14.15705891243589	CGAATACACATTCA
chr10	132116427	132116428	chr10:132116428:C:T	rs2035803	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr10	132589218	132589219	chr10:132589219:C:G	rs2814448	C	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr10	132815171	132815172	chr10:132815172:C:A	rs2387071	C	A	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr10	132978775	132978776	chr10:132978776:C:T	rs7089667	C	T	C	Sox1.mouse_HMG_4	6	1	+	4.310718871842493	4.83293248708267	TGACCACTCATTCC
chr10	132993875	132993876	chr10:132993876:G:A	rs541896958	G	A	G	Sox1.mouse_HMG_4	8	1	-	7.484029084827776	7.3429977865006375	TGAATTGACGTTCC
chr10	132995762	132995763	chr10:132995763:A:C	rs533352732	A	C	a	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr10	133143301	133143302	chr10:133143302:C:T	rs9418936	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr10	133182335	133182336	chr10:133182336:G:A	rs7086197	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr10	133184537	133184538	chr10:133184538:A:C	rs3008394	A	C	c	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr10	133184561	133184562	chr10:133184562:C:T	rs4838671	C	T	c	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr10	133224476	133224477	chr10:133224477:C:T	rs11597199	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr11	257029	257030	chr11:257030:G:A	rs532483	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	776278	776279	chr11:776279:A:C	rs11246309	A	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr11	1023162	1023163	chr11:1023163:G:T	chr11:1023163:G:T	G	T	G	Sox1.mouse_HMG_4	5	1	+	7.543452376110341	7.345344505238803	TGAATGAATGTGCA
chr11	1175595	1175596	chr11:1175596:C:T	rs1372897899	C	T	c	Sox1.mouse_HMG_4	7	1	-	5.7438464136322676	6.695273401594095	TGAATGCGTGTGCA
chr11	1633519	1633520	chr11:1633520:T:G	rs28449536	T	G	-	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr11	2077430	2077431	chr11:2077431:G:A	rs74048177	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr11	2159541	2159542	chr11:2159542:C:T	rs3842756	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr11	2275855	2275856	chr11:2275856:A:G	rs77411016	A	G	A	Sox1.mouse_HMG_4	8	1	+	5.603177177976327	0.29987226991725113	TGACTTCAAAGTCA
chr11	2375060	2375061	chr11:2375061:A:C	rs800138	A	C	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	2442813	2442814	chr11:2442814:A:C	rs35197079	A	C	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr11	2577559	2577560	chr11:2577560:C:T	rs4930128	C	T	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	2904530	2904531	chr11:2904531:A:G	rs389646	A	G	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr11	3393096	3393097	chr11:3393097:C:T	rs11822549	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr11	4164961	4164962	chr11:4164962:C:T	rs11031184	C	T	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr11	4392931	4392932	chr11:4392932:T:G	rs928913	T	G	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr11	4626169	4626170	chr11:4626170:A:T	rs74836383	A	T	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr11	4671903	4671904	chr11:4671904:A:C	rs11033275	A	C	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr11	4699973	4699974	chr11:4699974:T:A	rs1032446	T	A	A	Sox1.mouse_HMG_4	2	1	-	6.942318423812392	0.03356364449716964	GGAATAAGCATGCA
chr11	4704533	4704534	chr11:4704534:T:C	rs79232628	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	4704562	4704563	chr11:4704563:T:C	rs12222503	T	C	C	Sox1.mouse_HMG_4	3	1	-	6.8726611241908	-0.01475878561339905	TCAATTCTCATTCA
chr11	4704584	4704585	chr11:4704585:G:T	rs61681282	G	T	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	4864220	4864221	chr11:4864221:A:T	rs10836851	A	T	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	5036825	5036826	chr11:5036826:C:T	rs2445267	C	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	5037465	5037466	chr11:5037466:T:G	rs2445270	T	G	.	Sox1.mouse_HMG_4	7	1	-	6.190958946155908	6.21729019151773	CGAATTAAAATGCA
chr11	5303432	5303433	chr11:5303433:G:A	rs181854385	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr11	5369044	5369045	chr11:5369045:C:T	rs12796030	C	T	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr11	5797385	5797386	chr11:5797386:A:G	rs7949986	A	G	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	6319805	6319806	chr11:6319806:C:T	rs555764326	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr11	6319809	6319810	chr11:6319810:C:T	rs113589839	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr11	6477984	6477985	chr11:6477985:A:G	rs2303493	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr11	6627192	6627193	chr11:6627193:G:A	rs4758443	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	7089316	7089317	chr11:7089317:C:T	rs11041170	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr11	7383470	7383471	chr11:7383471:G:A	rs1386744	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr11	7451051	7451052	chr11:7451052:A:G	rs28473678	A	G	a	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr11	7677378	7677379	chr11:7677379:T:A	rs115122403	T	A	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	7985208	7985209	chr11:7985209:G:T	rs4758266	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr11	8878270	8878271	chr11:8878271:G:C	rs12418190	G	C	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr11	9459564	9459565	chr11:9459565:C:T	rs147953269	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr11	9460701	9460702	chr11:9460702:T:A	chr11:9460702:T:A	T	A	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	9460726	9460727	chr11:9460727:G:T	rs12574536	G	T	G	Sox1.mouse_HMG_4	6	1	+	4.257096416563899	3.849550327860541	TGACTCGCTAGTCA
chr11	9460734	9460735	chr11:9460735:G:C	rs889420071	G	C	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	9489167	9489168	chr11:9489168:C:T	rs972594	C	T	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr11	9738060	9738061	chr11:9738061:T:C	rs93139	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr11	10101229	10101230	chr11:10101230:G:A	rs10128601	G	A	G	Sox1.mouse_HMG_4	12	1	-	10.249045733408048	3.340290954092829	CGAATGGTAATTCA
chr11	10388556	10388557	chr11:10388557:T:C	rs4391811	T	C	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr11	10538942	10538943	chr11:10538943:G:A	rs10770124	G	A	G	Sox1.mouse_HMG_4	12	1	-	7.815628044072347	0.9068732647571263	TGACCAGAAATTCA
chr11	10550916	10550917	chr11:10550917:G:A	rs10840440	G	A	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr11	10990294	10990295	chr11:10990295:A:G	rs79350811	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr11	11077128	11077129	chr11:11077129:A:G	rs1124694	A	G	G	Sox1.mouse_HMG_4	9	1	+	6.710756226676516	3.345935339173508	TGAACTTGTATGCA
chr11	11143909	11143910	chr11:11143910:G:A	rs6484703	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr11	11471249	11471250	chr11:11471250:G:C	rs10831619	G	C	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	11476862	11476863	chr11:11476863:G:A	rs4910353	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr11	11513707	11513708	chr11:11513708:G:A	rs77990257	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	11513712	11513713	chr11:11513713:G:A	rs76978349	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr11	11573129	11573130	chr11:11573130:A:T	rs10831641	A	T	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	11836801	11836802	chr11:11836802:T:C	rs12791631	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	11988271	11988272	chr11:11988272:A:G	rs6485345	A	G	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr11	11993120	11993121	chr11:11993121:A:G	rs987663	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr11	11993152	11993153	chr11:11993153:T:C	rs987664	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr11	11997658	11997659	chr11:11997659:C:T	rs76777854	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr11	12042647	12042648	chr11:12042648:A:G	rs184813797	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	12084550	12084551	chr11:12084551:A:C	rs4103544	A	C	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	12092401	12092402	chr11:12092402:G:A	rs7950281	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr11	12182094	12182095	chr11:12182095:T:G	rs7124014	T	G	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr11	12240862	12240863	chr11:12240863:G:A	rs2279613	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr11	12457142	12457143	chr11:12457143:G:A	rs77638919	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	12506941	12506942	chr11:12506942:C:T	rs4277094	C	T	C	Sox1.mouse_HMG_4	7	1	+	11.1572165367296	11.395129375914781	TGAATGGCCATGCA
chr11	12569991	12569992	chr11:12569992:A:G	rs145662300	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr11	12625377	12625378	chr11:12625378:A:G	rs61879780	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr11	12626010	12626011	chr11:12626011:C:T	rs76003349	C	T	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	12663847	12663848	chr11:12663848:T:C	rs11022463	T	C	c	Sox1.mouse_HMG_4	0	1	+	4.573953429166116	0.672403681991516	TGAGCACCCATTCA
chr11	12847092	12847093	chr11:12847093:C:T	rs112628772	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	12901005	12901006	chr11:12901006:A:C	rs35593256	A	C	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr11	12939163	12939164	chr11:12939164:C:G	rs10734207	C	G	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr11	12998528	12998529	chr11:12998529:A:G	rs10831935	A	G	A	Sox1.mouse_HMG_4	5	1	-	14.711175607449555	11.79134719732047	TGAATTGTCATTCA
chr11	13104355	13104356	chr11:13104356:G:A	rs7934918	G	A	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr11	13183268	13183269	chr11:13183269:G:A	rs556662771	G	A	G	Sox1.mouse_HMG_4	8	1	-	14.645039393774088	14.504008095446949	TGAATGGACATTCA
chr11	13183286	13183287	chr11:13183287:G:A	rs6486101	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr11	13226112	13226113	chr11:13226113:T:C	rs877790	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	13448938	13448939	chr11:13448939:T:C	rs10741618	T	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	13719922	13719923	chr11:13719923:A:C	rs72866521	A	C	A	Sox1.mouse_HMG_4	2	1	+	7.107272834793531	0.19851805547831103	TAAATACATATTCA
chr11	13856650	13856651	chr11:13856651:A:G	rs3849162	A	G	G	Sox1.mouse_HMG_4	4	1	-	7.248304133120672	4.526287314293272	TAAATACACATTCA
chr11	13940401	13940402	chr11:13940402:C:T	rs11023028	C	T	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr11	14519124	14519125	chr11:14519125:A:G	rs1823466	A	G	G	Sox1.mouse_HMG_4	3	1	+	7.156961900245793	0.269541990441595	TGTATTTCCATTCA
chr11	15046023	15046024	chr11:15046024:A:C	rs7483283	A	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr11	15295924	15295925	chr11:15295925:C:T	rs11023511	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr11	15301735	15301736	chr11:15301736:T:C	rs1320209	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr11	15897570	15897571	chr11:15897571:A:C	rs28630606	A	C	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	15944805	15944806	chr11:15944806:T:A	rs7111730	T	A	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	16451636	16451637	chr11:16451637:T:C	rs11023947	T	C	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr11	17007197	17007198	chr11:17007198:A:G	rs7933984	A	G	a	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr11	17013089	17013090	chr11:17013090:T:C	rs6486336	T	C	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr11	17350588	17350589	chr11:17350589:T:C	chr11:17350589:T:C	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	17687453	17687454	chr11:17687454:A:C	rs4757566	A	C	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr11	17698902	17698903	chr11:17698903:C:T	rs10832845	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr11	17761803	17761804	chr11:17761804:G:C	rs533211887	G	C	G	Sox1.mouse_HMG_4	4	1	-	8.008775427041977	3.8847102633707946	GGAACAGAAATTCA
chr11	18335722	18335723	chr11:18335723:A:G	rs4150581	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr11	19102111	19102112	chr11:19102112:A:G	rs11025010	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr11	19455580	19455581	chr11:19455581:T:C	rs6483603	T	C	T	Sox1.mouse_HMG_4	3	1	-	5.233434990482378	-1.6539849193218201	TCAACAAATATTCA
chr11	19614815	19614816	chr11:19614816:C:T	rs113941667	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	19616147	19616148	chr11:19616148:G:A	rs11025195	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr11	19667262	19667263	chr11:19667263:T:C	rs7350468	T	C	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr11	19675689	19675690	chr11:19675690:C:T	rs10766579	C	T	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr11	20021892	20021893	chr11:20021893:A:G	rs2584834	A	G	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	20208599	20208600	chr11:20208600:G:C	rs9943579	G	C	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr11	20770735	20770736	chr11:20770736:T:C	rs16906777	T	C	C	Sox1.mouse_HMG_4	13	1	-	10.913455600989092	4.030710485011124	GGAATAATAATTCA
chr11	21510287	21510288	chr11:21510288:G:A	rs11601429	G	A	A	Sox1.mouse_HMG_4	1	1	+	4.872582753114862	-2.036172026200359	TGAATAATCATGCT
chr11	21510304	21510305	chr11:21510305:G:T	rs11601433	G	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr11	21924458	21924459	chr11:21924459:T:C	rs4922601	T	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr11	21924462	21924463	chr11:21924463:A:G	rs4922602	A	G	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr11	21960135	21960136	chr11:21960136:C:G	rs1487837	C	G	.	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr11	22318905	22318906	chr11:22318906:G:A	rs190996811	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr11	22800136	22800137	chr11:22800137:G:A	rs11026796	G	A	g	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	22832004	22832005	chr11:22832005:A:C	rs10766971	A	C	A	Sox1.mouse_HMG_4	11	1	-	7.145056119675087	3.6309020172687774	TGAATAAGCATTAA
chr11	22901753	22901754	chr11:22901754:C:T	rs10833847	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	23011314	23011315	chr11:23011315:A:T	rs11828070	A	T	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr11	23358876	23358877	chr11:23358877:T:C	rs4351818	T	C	t	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr11	23395254	23395255	chr11:23395255:G:A	rs1381719	G	A	A	Sox1.mouse_HMG_4	10	1	+	4.228161722799507	0.7172134771782332	TGTATGTTCAGTCA
chr11	23757641	23757642	chr11:23757642:A:C	rs11822638	A	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr11	23976748	23976749	chr11:23976749:T:A	rs7118930	T	A	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	23980246	23980247	chr11:23980247:C:T	rs75793797	C	T	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr11	24800469	24800470	chr11:24800470:A:C	rs10834486	A	C	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	24820658	24820659	chr11:24820659:A:C	rs61875870	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr11	25122659	25122660	chr11:25122660:G:A	rs11819771	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr11	25442644	25442645	chr11:25442645:T:G	rs2404125	T	G	T	Sox1.mouse_HMG_4	2	1	-	5.074832174895271	-1.8339226044199484	TTAACATCCATTCA
chr11	25510292	25510293	chr11:25510293:A:G	rs17242224	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.408016095089062	1.043195207586055	TGAAGGGTTATGCA
chr11	25737445	25737446	chr11:25737446:A:G	rs1908165	A	G	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	25774938	25774939	chr11:25774939:C:T	rs7949594	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr11	25818956	25818957	chr11:25818957:C:T	rs11028955	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr11	26087690	26087691	chr11:26087691:A:G	rs11029167	A	G	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	26087729	26087730	chr11:26087730:T:C	rs11029168	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr11	26187714	26187715	chr11:26187715:T:C	rs11029370	T	C	T	Sox1.mouse_HMG_4	12	1	+	7.720840098707044	14.629594878022264	TGAATTATCATTTA
chr11	26187723	26187724	chr11:26187724:G:T	rs4075765	G	T	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	26231578	26231579	chr11:26231579:G:T	rs7940616	G	T	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	26231624	26231625	chr11:26231625:C:T	rs898731	C	T	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr11	26584541	26584542	chr11:26584542:A:T	rs1690067	A	T	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr11	26735008	26735009	chr11:26735009:T:C	rs4923384	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.844969548839605	-2.0307995842846776	GGAATAGTCATTGA
chr11	27108386	27108387	chr11:27108387:A:G	rs545434975	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr11	27214014	27214015	chr11:27214015:G:A	rs1372908	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	27292315	27292316	chr11:27292316:A:T	rs10835153	A	T	T	Sox1.mouse_HMG_4	11	1	-	7.427860385621916	0.5474454714343462	TGAATTTTCACTCA
chr11	27656035	27656036	chr11:27656036:C:A	rs11030099	C	A	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	27656038	27656039	chr11:27656039:G:T	rs11030100	G	T	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr11	27908714	27908715	chr11:27908715:T:C	rs74644196	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.0310004897521985	0.15523135662791732	TGACCTCCCATTCA
chr11	28269318	28269319	chr11:28269319:A:T	rs12797155	A	T	a	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr11	28269342	28269343	chr11:28269343:G:A	rs12797712	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr11	28491286	28491287	chr11:28491287:T:G	rs2007527	T	G	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr11	28620191	28620192	chr11:28620192:A:G	rs186852484	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr11	28699699	28699700	chr11:28699700:G:A	rs482986	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	29159619	29159620	chr11:29159620:A:G	chr11:29159620:A:G	A	G	A	Sox1.mouse_HMG_4	8	1	-	5.579259804456673	5.720291102783812	TGAACAGTTATTAA
chr11	29243831	29243832	chr11:29243832:C:T	rs4511302	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr11	30011643	30011644	chr11:30011644:G:A	rs3802914	G	A	g	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr11	30169689	30169690	chr11:30169690:G:T	rs7128357	G	T	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr11	32100034	32100035	chr11:32100035:G:A	rs223066	G	A	A	Sox1.mouse_HMG_4	12	1	-	7.127882030610241	0.21912725129502042	TGACCTCTTATTCA
chr11	32118616	32118617	chr11:32118617:G:A	rs2135464	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	32203185	32203186	chr11:32203186:G:A	rs10767921	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	32297472	32297473	chr11:32297473:C:G	rs16923064	C	G	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr11	32392263	32392264	chr11:32392264:G:A	chr11:32392264:G:A	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr11	33372655	33372656	chr11:33372656:A:G	rs11032246	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	33676188	33676189	chr11:33676189:T:C	rs76213795	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr11	33739257	33739258	chr11:33739258:C:T	rs10742305	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr11	34063210	34063211	chr11:34063211:G:A	rs10501132	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	34546768	34546769	chr11:34546769:T:C	rs35604895	T	C	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr11	34574060	34574061	chr11:34574061:G:A	rs1530966	G	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr11	34630767	34630768	chr11:34630768:C:G	chr11:34630768:C:G	C	G	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	34630788	34630789	chr11:34630789:C:T	rs16925936	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.295347695275543	7.017364514102943	GGAACGCTCAGTCA
chr11	34630806	34630807	chr11:34630807:C:A	rs139716757	C	A	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr11	34630816	34630817	chr11:34630817:C:T	rs11032792	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr11	34632143	34632144	chr11:34632144:G:A	rs117875964	G	A	G	Sox1.mouse_HMG_4	1	1	+	8.33446529065249	1.4257105113372701	TGAACACTCAGTCA
chr11	34650775	34650776	chr11:34650776:A:T	rs193276295	A	T	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr11	34650817	34650818	chr11:34650818:G:A	rs183240116	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr11	34772884	34772885	chr11:34772885:T:A	rs1396888	T	A	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	34890322	34890323	chr11:34890323:C:T	rs72926580	C	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	34927279	34927280	chr11:34927280:G:C	rs10488803	G	C	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	34977198	34977199	chr11:34977199:G:A	rs746124	G	A	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr11	34987685	34987686	chr11:34987686:T:C	rs2762954	T	C	t	Sox1.mouse_HMG_4	0	1	+	7.226636849102378	3.32508710192778	TGAATAGGCATTAA
chr11	35043257	35043258	chr11:35043258:A:G	rs536864	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr11	35337327	35337328	chr11:35337328:A:T	rs150231821	A	T	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	35337371	35337372	chr11:35337372:C:T	rs78640408	C	T	c	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	35337377	35337378	chr11:35337378:G:A	rs116167968	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr11	35337891	35337892	chr11:35337892:A:G	rs7926910	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.160592714413496	0.2778475984355264	TGACTCATAATTCA
chr11	35516881	35516882	chr11:35516882:G:C	rs7932452	G	C	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	35523283	35523284	chr11:35523284:T:C	rs12800242	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	35641794	35641795	chr11:35641795:T:C	rs12288617	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr11	35889167	35889168	chr11:35889168:A:G	rs673129	A	G	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr11	35954267	35954268	chr11:35954268:C:T	rs140935833	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr11	35992152	35992153	chr11:35992153:G:T	rs114379217	G	T	G	Sox1.mouse_HMG_4	7	1	-	4.820666262312372	4.7943350169505505	TGAAAAACCAGTCA
chr11	35992218	35992219	chr11:35992219:C:A	rs146192735	C	A	C	Sox1.mouse_HMG_4	12	1	+	7.058951980018158	0.15019720070293707	TGAACAAGAATGCA
chr11	36060516	36060517	chr11:36060517:T:G	rs1499516	T	G	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr11	36164903	36164904	chr11:36164904:G:A	rs10836514	G	A	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr11	36195682	36195683	chr11:36195683:C:T	rs16928509	C	T	T	Sox1.mouse_HMG_4	1	1	-	5.261774855610029	-1.6469799237051916	TGAACAAATATACA
chr11	36364938	36364939	chr11:36364939:A:G	rs78613190	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	36365204	36365205	chr11:36365205:C:T	rs10501153	C	T	T	Sox1.mouse_HMG_4	5	1	-	8.507604379494639	8.949383602099976	TGAACGATCATTCC
chr11	36388275	36388276	chr11:36388276:T:C	rs606442	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	36403868	36403869	chr11:36403869:T:A	rs138968367	T	A	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr11	36406248	36406249	chr11:36406249:C:G	rs35047514	C	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr11	36635408	36635409	chr11:36635409:A:C	rs1498344	A	C	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr11	36744674	36744675	chr11:36744675:T:G	rs4756345	T	G	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	36965132	36965133	chr11:36965133:C:G	rs58706519	C	G	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	37390832	37390833	chr11:37390833:A:T	rs12273055	A	T	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	37619188	37619189	chr11:37619189:A:C	rs2085941	A	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr11	38333742	38333743	chr11:38333743:A:G	rs2861130	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr11	39102399	39102400	chr11:39102400:C:T	rs1381312	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	39212148	39212149	chr11:39212149:G:A	rs76717469	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr11	39480701	39480702	chr11:39480702:T:G	rs79657487	T	G	T	Sox1.mouse_HMG_4	11	1	+	3.6912280953472534	0.17707399294094284	TGAAGAGGCATTCC
chr11	39930229	39930230	chr11:39930230:T:A	rs16926386	T	A	t	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr11	40501461	40501462	chr11:40501462:A:T	rs7932464	A	T	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr11	40971497	40971498	chr11:40971498:T:C	rs66539910	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr11	41245420	41245421	chr11:41245421:G:T	rs191683039	G	T	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr11	41394777	41394778	chr11:41394778:C:G	rs116847763	C	G	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	41429001	41429002	chr11:41429002:G:A	rs1814069	G	A	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr11	41879709	41879710	chr11:41879710:A:G	rs7952179	A	G	G	Sox1.mouse_HMG_4	8	1	-	4.516011382686749	4.6570426810138885	TGATTGGTTAGTCA
chr11	42315395	42315396	chr11:42315396:T:C	rs11036840	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr11	43272505	43272506	chr11:43272506:T:G	rs7110435	T	G	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	43287161	43287162	chr11:43287162:G:T	rs61883503	G	T	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	43832700	43832701	chr11:43832701:C:A	rs117627355	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	44065632	44065633	chr11:44065633:C:A	rs178510	C	A	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	44065633	44065634	chr11:44065634:C:T	rs75372436	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr11	44081626	44081627	chr11:44081627:G:T	rs3134909	G	T	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr11	44094602	44094603	chr11:44094603:A:T	rs77942604	A	T	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr11	44408902	44408903	chr11:44408903:T:C	rs897010	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	44408912	44408913	chr11:44408913:A:G	rs116142251	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr11	44424678	44424679	chr11:44424679:C:T	rs529804454	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	44435588	44435589	chr11:44435589:C:T	rs4755250	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr11	44770054	44770055	chr11:44770055:G:C	rs4755891	G	C	G	Sox1.mouse_HMG_4	3	1	+	7.269639002631695	10.36657315669465	TGAGTACACATTCA
chr11	44862509	44862510	chr11:44862510:C:T	rs1014907958	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr11	44862511	44862512	chr11:44862512:C:A	rs567119887	C	A	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr11	44927583	44927584	chr11:44927584:C:T	rs145608474	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr11	45160130	45160131	chr11:45160131:C:T	rs10838427	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr11	45160133	45160134	chr11:45160134:G:A	rs72907072	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	45187283	45187284	chr11:45187284:C:T	rs3758729	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.8132429495612	4.6722116512340595	TGGATAGACGTTCA
chr11	45332614	45332615	chr11:45332615:C:T	rs7482739	C	T	T	Sox1.mouse_HMG_4	1	1	-	7.627180785765792	0.7184260064505701	TGAAGTGCCATTCA
chr11	45374258	45374259	chr11:45374259:C:A	rs11038417	C	A	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr11	45449949	45449950	chr11:45449950:G:A	rs10769148	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr11	45449969	45449970	chr11:45449970:T:C	rs10769149	T	C	T	Sox1.mouse_HMG_4	10	1	+	3.7256310385911915	-3.150138094533089	CGAAATGCCATTCA
chr11	45517328	45517329	chr11:45517329:C:A	rs11038507	C	A	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	45651174	45651175	chr11:45651175:T:C	rs4148903	T	C	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr11	45791761	45791762	chr11:45791762:A:G	rs11038658	A	G	G	Sox1.mouse_HMG_4	3	1	+	4.351389386212877	-2.5360305235913208	GGAATGATCAGGCA
chr11	46123116	46123117	chr11:46123117:A:G	rs4756058	A	G	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr11	46279170	46279171	chr11:46279171:G:A	rs12280680	G	A	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	46505368	46505369	chr11:46505369:G:A	rs191100239	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr11	46729850	46729851	chr11:46729851:T:C	rs2282687	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr11	47378047	47378048	chr11:47378048:C:T	rs190258273	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	47378050	47378051	chr11:47378051:G:A	rs2278890	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr11	47427992	47427993	chr11:47427993:C:T	rs7105122	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr11	47538998	47538999	chr11:47538999:T:C	rs115132983	T	C	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	47655854	47655855	chr11:47655855:T:A	rs61897976	T	A	T	Sox1.mouse_HMG_4	10	1	+	6.847430625526671	-0.02833850759761103	TGAATATGCATACA
chr11	47704574	47704575	chr11:47704575:C:T	rs139606530	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.004669244390377	6.863637946063236	TGACCTCACATTCA
chr11	48012366	48012367	chr11:48012367:A:G	rs11601764	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	48077757	48077758	chr11:48077758:A:G	rs79397199	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	48098138	48098139	chr11:48098139:G:A	rs10742831	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr11	48457456	48457457	chr11:48457457:C:T	rs11039760	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr11	49184936	49184937	chr11:49184937:A:G	rs117457497	A	G	.	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr11	49685808	49685809	chr11:49685809:A:C	rs12364577	A	C	A	Sox1.mouse_HMG_4	2	1	+	8.423956267430293	1.5152014881150728	TGAACAATAAGTCA
chr11	49960003	49960004	chr11:49960004:C:A	rs10839465	C	A	C	Sox1.mouse_HMG_4	6	1	-	4.054025978127844	3.6464798894244863	GGAATGGCTAGGCA
chr11	50441520	50441521	chr11:50441521:T:C	rs539590	T	C	.	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr11	54628348	54628349	chr11:54628349:G:C	rs57031685	G	C	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	55085163	55085164	chr11:55085164:C:T	rs138400425	C	T	.	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr11	55085197	55085198	chr11:55085198:G:A	rs11825822	G	A	.	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr11	56848089	56848090	chr11:56848090:G:C	rs190722568	G	C	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr11	57071889	57071890	chr11:57071890:A:G	rs10896568	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr11	57098533	57098534	chr11:57098534:T:C	rs17151596	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr11	57187371	57187372	chr11:57187372:C:T	rs716745	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	57290575	57290576	chr11:57290576:A:G	rs17573746	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr11	57323720	57323721	chr11:57323721:G:A	rs77360448	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr11	57427762	57427763	chr11:57427763:C:T	rs57381335	C	T	T	Sox1.mouse_HMG_4	8	1	+	8.14414922250976	8.00311792418262	TGATTAACCATTCA
chr11	57644901	57644902	chr11:57644902:G:C	rs111713924	G	C	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr11	57652406	57652407	chr11:57652407:T:C	rs1783829	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	58014443	58014444	chr11:58014444:T:G	chr11:58014444:T:G	T	G	T	Sox1.mouse_HMG_4	5	1	-	6.413801192604385	2.8540856889984205	TGAATAGGAAGTCC
chr11	58142757	58142758	chr11:58142758:G:A	rs908350687	G	A	a	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr11	58323771	58323772	chr11:58323772:A:G	rs6591469	A	G	g	Sox1.mouse_HMG_4	9	1	+	7.102814241486241	3.737993353983234	TGAATTTCCAGTCC
chr11	58525501	58525502	chr11:58525502:C:T	rs113901489	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	58525502	58525503	chr11:58525503:G:A	rs10896788	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr11	58547360	58547361	chr11:58547361:T:C	rs956658	T	C	C	Sox1.mouse_HMG_4	8	1	+	4.743055509260712	4.884086807587852	AGAATAGCTAGTCA
chr11	58739764	58739765	chr11:58739765:G:C	rs994153576	G	C	G	Sox1.mouse_HMG_4	6	1	-	9.200923943494178	10.130683647437714	TGAATTCGCAGTCA
chr11	59560455	59560456	chr11:59560456:G:A	rs139109473	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr11	59560460	59560461	chr11:59560461:G:A	rs550288360	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.764358984738544	-2.144395794576675	TGAACTAACAGGCA
chr11	59560468	59560469	chr11:59560469:A:G	rs693110	A	G	G	Sox1.mouse_HMG_4	9	1	+	4.764358984738544	1.3995380972355373	TGAACTAACAGGCA
chr11	59724199	59724200	chr11:59724200:C:T	rs11230061	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	59731089	59731090	chr11:59731090:C:A	rs475706	C	A	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	60389633	60389634	chr11:60389634:T:G	rs2233252	T	G	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	60571031	60571032	chr11:60571032:C:T	rs75124615	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.579982286492443	4.438950988165301	TGAATAGACATTTC
chr11	60991570	60991571	chr11:60991571:T:C	rs61348566	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	61004454	61004455	chr11:61004455:G:A	rs2237996	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	61058694	61058695	chr11:61058695:G:A	rs175118	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	61740906	61740907	chr11:61740907:A:G	rs198441	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr11	62245112	62245113	chr11:62245113:G:T	rs4122119	G	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr11	62488144	62488145	chr11:62488145:C:T	rs11827029	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr11	62490559	62490560	chr11:62490560:A:G	rs528723293	A	G	A	Sox1.mouse_HMG_4	13	1	+	11.923022574946689	5.0402774589687205	TGAACGGACATTCA
chr11	62502301	62502302	chr11:62502302:G:A	rs11231121	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr11	62611713	62611714	chr11:62611714:C:T	rs189332869	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	62853375	62853376	chr11:62853376:T:C	chr11:62853376:T:C	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr11	62965599	62965600	chr11:62965600:T:A	rs10792364	T	A	A	Sox1.mouse_HMG_4	13	1	-	4.628391579165442	-2.254353536812527	GGAGTAGCCATTCA
chr11	63024348	63024349	chr11:63024349:C:G	rs149077958	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr11	63240310	63240311	chr11:63240311:T:C	rs77646115	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr11	63241277	63241278	chr11:63241278:G:A	rs10897399	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr11	63568817	63568818	chr11:63568818:A:G	rs11231520	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr11	64659560	64659561	chr11:64659561:G:A	rs139154826	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	65129259	65129260	chr11:65129260:T:C	rs9971546	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.467385741316655	-0.415359374661314	TTAATTCATATTCA
chr11	65357927	65357928	chr11:65357928:C:T	rs79802876	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr11	65488942	65488943	chr11:65488943:G:A	rs576999662	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr11	65727515	65727516	chr11:65727516:C:T	rs537786	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	66053201	66053202	chr11:66053202:A:G	rs503156	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr11	66411591	66411592	chr11:66411592:T:C	rs12785651	T	C	t	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	67656447	67656448	chr11:67656448:G:A	rs116178883	G	A	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr11	67656477	67656478	chr11:67656478:G:A	rs74909140	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	68209523	68209524	chr11:68209524:G:A	chr11:68209524:G:A	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr11	68216060	68216061	chr11:68216061:G:A	rs78352786	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.142969837625908	7.380882676811091	TGAACCCCAATTCA
chr11	68279362	68279363	chr11:68279363:C:T	rs1211566	C	T	c	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	68354826	68354827	chr11:68354827:T:G	rs312788	T	G	.	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	68521098	68521099	chr11:68521099:A:G	rs4084149	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.878068907033003	-0.9977002260912784	TGAATTCAAATACA
chr11	69012695	69012696	chr11:69012696:G:A	chr11:69012696:G:A	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.397794972317683	-2.510959806997538	TGAATGGCCAGTGA
chr11	69102680	69102681	chr11:69102681:A:G	rs11228497	A	G	A	Sox1.mouse_HMG_4	13	1	+	3.998394115261365	-2.8843510007166038	TGCATACTCATGCA
chr11	69143047	69143048	chr11:69143048:A:G	rs11228520	A	G	A	Sox1.mouse_HMG_4	3	1	-	4.251767298139744	7.348701452202703	TGATTGGATAGTCA
chr11	69187811	69187812	chr11:69187812:A:G	rs73526023	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	69229314	69229315	chr11:69229315:G:A	rs11603288	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	69229346	69229347	chr11:69229347:T:C	rs11228577	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr11	69274646	69274647	chr11:69274647:A:G	rs11607511	A	G	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr11	69335355	69335356	chr11:69335356:G:A	rs75100465	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr11	69518184	69518185	chr11:69518185:A:T	rs476679	A	T	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr11	69621228	69621229	chr11:69621229:G:A	rs191414500	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.3659713583663695	0.4572165790511493	GGAATAGAAAGTCA
chr11	69638461	69638462	chr11:69638462:T:C	rs2510461	T	C	T	Sox1.mouse_HMG_4	13	1	-	5.064445917018102	-1.8182991989598665	GGAACCTTCATTCA
chr11	69861733	69861734	chr11:69861734:C:T	rs4074402	C	T	T	Sox1.mouse_HMG_4	1	1	-	4.918019264774381	-1.9907355145408394	TGAACCTCTGTTCA
chr11	69954979	69954980	chr11:69954980:C:T	rs149142321	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr11	70054255	70054256	chr11:70054256:T:G	rs114252457	T	G	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr11	70054258	70054259	chr11:70054259:T:C	rs4980585	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr11	70066145	70066146	chr11:70066146:A:G	rs75341943	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr11	70578353	70578354	chr11:70578354:G:A	rs11236713	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr11	70710008	70710009	chr11:70710009:C:T	rs12421506	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	70884603	70884604	chr11:70884604:T:C	rs686805	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	71137508	71137509	chr11:71137509:G:A	rs4945086	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr11	71169994	71169995	chr11:71169995:A:G	rs10897697	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr11	71237851	71237852	chr11:71237852:T:C	rs57661690	T	C	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr11	71248911	71248912	chr11:71248912:C:T	rs533526329	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	71364559	71364560	chr11:71364560:G:A	rs1392266564	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr11	71364561	71364562	chr11:71364562:A:G	rs1792313	A	G	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	71373766	71373767	chr11:71373767:C:A	rs1792301	C	A	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	71940914	71940915	chr11:71940915:G:C	rs2187496	G	C	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr11	71991630	71991631	chr11:71991631:A:G	rs141194893	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.701459871794612	-2.174309261329668	TTAACTGCTATTCA
chr11	72094005	72094006	chr11:72094006:C:T	rs2508860	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	72871719	72871720	chr11:72871720:C:T	rs7115321	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	73241410	73241411	chr11:73241411:T:C	rs2013474	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	73327774	73327775	chr11:73327775:C:T	rs7123298	C	T	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	73327776	73327777	chr11:73327777:C:T	rs7123300	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	73327788	73327789	chr11:73327789:G:A	rs56184513	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr11	73425215	73425216	chr11:73425216:A:T	rs12288753	A	T	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr11	73561900	73561901	chr11:73561901:T:G	rs12291233	T	G	G	Sox1.mouse_HMG_4	2	1	-	6.824001358513717	-0.08475342080150328	AGAATTGAAATTCA
chr11	73561901	73561902	chr11:73561902:C:T	rs79915238	C	T	C	Sox1.mouse_HMG_4	1	1	-	6.824001358513717	-0.08475342080150328	AGAATTGAAATTCA
chr11	73972461	73972462	chr11:73972462:G:C	rs56007494	G	C	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	74141573	74141574	chr11:74141574:G:C	rs951965801	G	C	G	Sox1.mouse_HMG_4	5	1	-	7.45228405454873	10.570220335549356	TGACTCTTTATTCA
chr11	74551167	74551168	chr11:74551168:T:C	rs657474	T	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr11	74577780	74577781	chr11:74577781:T:G	rs9667592	T	G	T	Sox1.mouse_HMG_4	13	1	-	6.2660600288724435	2.667978478300678	TGAATGTGTGTGCA
chr11	74728008	74728009	chr11:74728009:G:A	rs72991236	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	75170599	75170600	chr11:75170600:G:A	rs1676879	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr11	75170636	75170637	chr11:75170637:C:T	rs1789694	C	T	c	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr11	75430716	75430717	chr11:75430717:T:C	rs3018101	T	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	75482168	75482169	chr11:75482169:C:T	rs61897411	C	T	C	Sox1.mouse_HMG_4	0	1	-	6.870296756217641	3.603392962338858	GGAATTTCCATTCC
chr11	75712087	75712088	chr11:75712088:G:T	rs11236498	G	T	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr11	75713054	75713055	chr11:75713055:T:C	rs2508390	T	C	C	Sox1.mouse_HMG_4	9	1	-	6.991931890374505	3.627111002871499	TGAATTATAAGGCA
chr11	75827731	75827732	chr11:75827732:G:C	rs73489925	G	C	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr11	76371460	76371461	chr11:76371461:T:C	rs75640464	T	C	T	Sox1.mouse_HMG_4	6	1	+	10.072660138980789	9.550446523740613	TGAATATGTATGCA
chr11	76763492	76763493	chr11:76763493:T:C	rs10160660	T	C	T	Sox1.mouse_HMG_4	9	1	-	5.259766235844201	1.894945348341192	TGAACAACTATTTA
chr11	76861391	76861392	chr11:76861392:G:A	rs117063835	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.348083140977462	6.870296756217641	GGAATTCCCATTCC
chr11	77093084	77093085	chr11:77093085:G:A	rs6592705	G	A	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr11	77162573	77162574	chr11:77162574:T:C	rs3740763	T	C	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr11	77351040	77351041	chr11:77351041:T:C	rs17135577	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr11	77419522	77419523	chr11:77419523:T:C	rs2844328	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr11	77752540	77752541	chr11:77752541:A:T	rs61900164	A	T	A	Sox1.mouse_HMG_4	4	1	-	3.966426438377386	-2.8796555441211953	TGGATTGCCATTCC
chr11	77914188	77914189	chr11:77914189:A:G	rs111848793	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr11	78310702	78310703	chr11:78310703:G:A	rs1237595626	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	78953037	78953038	chr11:78953038:G:T	rs117478501	G	T	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr11	79025709	79025710	chr11:79025710:G:T	rs150589339	G	T	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr11	79241779	79241780	chr11:79241780:C:T	rs78566352	C	T	C	Sox1.mouse_HMG_4	6	1	+	3.7342879726869818	4.256501587927158	TGAATGCTCAGCCA
chr11	79903022	79903023	chr11:79903023:C:T	rs17139057	C	T	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr11	80186902	80186903	chr11:80186903:A:G	rs1528638	A	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	80473718	80473719	chr11:80473719:C:T	rs11232156	C	T	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr11	80605053	80605054	chr11:80605054:G:C	rs7111552	G	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr11	80605095	80605096	chr11:80605096:T:C	rs74238086	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr11	81026081	81026082	chr11:81026082:T:C	rs78795705	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr11	81175533	81175534	chr11:81175534:A:G	rs10897762	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr11	81190799	81190800	chr11:81190800:A:C	rs139161943	A	C	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr11	81262528	81262529	chr11:81262529:A:G	rs150763538	A	G	A	Sox1.mouse_HMG_4	9	1	+	10.41053127882756	7.0457103913245565	TGAATTTCTATGCA
chr11	81681540	81681541	chr11:81681541:T:C	rs61888580	T	C	T	Sox1.mouse_HMG_4	13	1	-	8.099705335553706	1.2169602195757374	TGAAAAGATATTCA
chr11	81871043	81871044	chr11:81871044:G:A	rs6592012	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr11	81912222	81912223	chr11:81912223:T:G	rs11232923	T	G	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	82527313	82527314	chr11:82527314:T:A	rs17143748	T	A	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr11	82527352	82527353	chr11:82527353:C:T	rs4944403	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	82576958	82576959	chr11:82576959:T:C	rs4944406	T	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr11	82648880	82648881	chr11:82648881:C:T	rs1497112	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr11	82654123	82654124	chr11:82654124:G:A	rs7939840	G	A	g	Sox1.mouse_HMG_4	10	1	+	6.862635945283057	3.351687699661783	TGAATGCCCAGGCA
chr11	82750635	82750636	chr11:82750636:G:A	rs7130550	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr11	82810944	82810945	chr11:82810945:G:T	rs10792647	G	T	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr11	83335064	83335065	chr11:83335065:T:G	rs17457655	T	G	T	Sox1.mouse_HMG_4	7	1	-	5.233434990482378	5.259766235844199	TTAACAAATATTCA
chr11	83410163	83410164	chr11:83410164:G:A	rs11233607	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr11	83522254	83522255	chr11:83522255:G:A	rs6592119	G	A	A	Sox1.mouse_HMG_4	4	1	-	4.363588731947839	7.085605550775239	TTAACAGGTATTCA
chr11	83602312	83602313	chr11:83602313:A:G	rs17145701	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.479108768596843	0.6033396354725615	TGAACGCACATGCA
chr11	83961630	83961631	chr11:83961631:G:C	rs77729597	G	C	G	Sox1.mouse_HMG_4	12	1	-	5.171713715753314	-1.7370410635619067	TTAACATTTATTCA
chr11	84140535	84140536	chr11:84140536:C:A	rs71469628	C	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr11	85759897	85759898	chr11:85759898:A:G	rs592712	A	G	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	85805512	85805513	chr11:85805513:G:C	rs12286206	G	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	85870223	85870224	chr11:85870224:G:A	rs78356210	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr11	86070199	86070200	chr11:86070200:C:A	rs187147924	C	A	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr11	86443039	86443040	chr11:86443040:A:G	rs118087427	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr11	86488630	86488631	chr11:86488631:C:T	rs12292032	C	T	C	Sox1.mouse_HMG_4	5	1	-	4.424525195745287	4.866304418350625	GGAGTGGTCATTCA
chr11	86516945	86516946	chr11:86516946:G:C	rs677301	G	C	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr11	86583367	86583368	chr11:86583368:G:T	rs7117143	G	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	86608756	86608757	chr11:86608757:A:G	rs186253171	A	G	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr11	86617975	86617976	chr11:86617976:C:T	rs17757676	C	T	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr11	86629229	86629230	chr11:86629230:G:T	rs116548581	G	T	G	Sox1.mouse_HMG_4	7	1	+	6.626828778511062	7.842499851019893	TGAACTTGTATTCC
chr11	86783253	86783254	chr11:86783254:G:C	rs7114246	G	C	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr11	86803161	86803162	chr11:86803162:T:C	rs34873514	T	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	86917811	86917812	chr11:86917812:A:T	rs17758621	A	T	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr11	87161865	87161866	chr11:87161866:T:C	rs549932	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	87170578	87170579	chr11:87170579:C:T	rs572433	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr11	87170598	87170599	chr11:87170599:A:G	rs489247	A	G	C	Sox1.mouse_HMG_4	10	1	-	10.669236055391403	3.793466922267122	TGAATACCCATGCA
chr11	87257130	87257131	chr11:87257131:C:T	rs643902	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	87320770	87320771	chr11:87320771:T:A	rs7108829	T	A	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	87867127	87867128	chr11:87867128:C:T	rs2508487	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr11	88046123	88046124	chr11:88046124:C:T	rs665906	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr11	88157030	88157031	chr11:88157031:T:G	rs61909944	T	G	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr11	88418626	88418627	chr11:88418627:G:A	rs72970471	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr11	88435413	88435414	chr11:88435414:C:T	rs78582254	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	88523704	88523705	chr11:88523705:A:G	rs308878	A	G	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	88620633	88620634	chr11:88620634:G:A	rs905646	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr11	88751657	88751658	chr11:88751658:G:C	rs12276517	G	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr11	88780022	88780023	chr11:88780023:C:T	rs79432530	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	89221170	89221171	chr11:89221171:C:T	rs6483002	C	T	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr11	89382049	89382050	chr11:89382050:T:C	rs317179	T	C	C	Sox1.mouse_HMG_4	11	1	-	5.024246169808567	8.390506981589825	TGAATAATCAGACA
chr11	89610879	89610880	chr11:89610880:A:G	rs7125738	A	G	-	Sox1.mouse_HMG_4	2	1	+	4.8201081670687	-2.08864661224652	TGAATAGTTCTGCA
chr11	89660487	89660488	chr11:89660488:C:T	rs150434686	C	T	.	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	90459298	90459299	chr11:90459299:A:G	rs542612	A	G	G	Sox1.mouse_HMG_4	3	1	+	5.233434990482377	-1.6539849193218201	TGAACAAATATTAA
chr11	90513390	90513391	chr11:90513391:T:C	rs10765337	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr11	90593320	90593321	chr11:90593321:C:G	rs4635043	C	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr11	90912904	90912905	chr11:90912905:A:T	rs1524954	A	T	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr11	91163953	91163954	chr11:91163954:A:G	rs2514084	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	91857483	91857484	chr11:91857484:T:C	rs956647	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr11	91942716	91942717	chr11:91942717:T:C	rs1945873	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr11	92165607	92165608	chr11:92165608:T:G	rs10830860	T	G	T	Sox1.mouse_HMG_4	8	1	-	4.626327924639147	5.3850159223775895	TGAACCACAGTTCA
chr11	92591661	92591662	chr11:92591662:G:A	rs541556	G	A	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr11	93280220	93280221	chr11:93280221:T:G	rs7943372	T	G	T	Sox1.mouse_HMG_4	13	1	-	4.393368521353744	0.7952869707819783	TGAACAGGTAGGCA
chr11	93515794	93515795	chr11:93515795:C:G	rs7111773	C	G	C	Sox1.mouse_HMG_4	4	1	+	5.263214779888282	1.1391496162170995	TGAACAAATGTGCA
chr11	93872140	93872141	chr11:93872141:T:A	rs608479	T	A	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr11	93939605	93939606	chr11:93939606:C:T	rs78582072	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	94000839	94000840	chr11:94000840:G:A	rs2203793	G	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr11	94151176	94151177	chr11:94151177:T:A	rs57562692	T	A	T	Sox1.mouse_HMG_4	7	1	-	6.9241921357610305	7.188436220308035	GGAATGGAAAGTCA
chr11	94174344	94174345	chr11:94174345:G:T	rs12284895	G	T	G	Sox1.mouse_HMG_4	10	1	-	6.905646770381738	6.905646770381738	TGAATTCTCACTCA
chr11	94322688	94322689	chr11:94322689:T:G	rs11020733	T	G	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr11	94537015	94537016	chr11:94537016:A:G	rs2508781	A	G	A	Sox1.mouse_HMG_4	9	1	+	5.341346965271489	1.9765260777684823	TAAACAGCTATTCA
chr11	94537069	94537070	chr11:94537070:T:C	rs11020819	T	C	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr11	94960598	94960599	chr11:94960599:T:C	rs10741497	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr11	95074416	95074417	chr11:95074417:A:G	rs610183	A	G	a	Sox1.mouse_HMG_4	9	1	+	4.2016190385039	0.8367981510008928	GGAAAGGACATTCA
chr11	95147835	95147836	chr11:95147836:G:A	rs72981727	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr11	95652078	95652079	chr11:95652079:G:A	rs61904092	G	A	G	Sox1.mouse_HMG_4	1	1	+	5.494128724218875	-1.4146260550963456	TGAACAGATGGTCA
chr11	96023527	96023528	chr11:96023528:C:T	rs184925187	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr11	96113376	96113377	chr11:96113377:T:C	rs10831485	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr11	96195195	96195196	chr11:96195196:A:G	rs1939477	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	96228771	96228772	chr11:96228772:T:C	rs182811811	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr11	96235495	96235496	chr11:96235496:G:T	rs2186584	G	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr11	96239345	96239346	chr11:96239346:C:T	rs527077	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	96271448	96271449	chr11:96271449:C:T	rs78014775	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr11	96271470	96271471	chr11:96271471:A:G	rs11825625	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	96273024	96273025	chr11:96273025:T:C	rs75152834	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr11	96618970	96618971	chr11:96618971:T:G	rs2919048	T	G	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	96709392	96709393	chr11:96709393:T:C	rs77692417	T	C	.	Sox1.mouse_HMG_4	4	1	+	10.93277742049624	8.210760601668841	TGAATTGACATGCA
chr11	96781314	96781315	chr11:96781315:C:T	rs10790108	C	T	T	Sox1.mouse_HMG_4	0	1	+	7.570303881533396	11.471853628707994	CGAATCACCATTCA
chr11	96804254	96804255	chr11:96804255:G:A	rs7939964	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr11	96863650	96863651	chr11:96863651:A:T	rs35440310	A	T	A	Sox1.mouse_HMG_4	10	1	-	3.961796613386226	-2.9139725197380555	GGAATGGCCATGCC
chr11	96867185	96867186	chr11:96867186:G:C	rs11219779	G	C	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr11	96867189	96867190	chr11:96867190:G:A	rs1159532	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	98693674	98693675	chr11:98693675:G:A	rs7109002	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr11	98820360	98820361	chr11:98820361:C:G	rs936032788	C	G	c	Sox1.mouse_HMG_4	7	1	-	9.84372801216979	10.821486245493436	TGAACTCGCATTCA
chr11	99349409	99349410	chr11:99349410:A:G	rs10893173	A	G	g	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr11	99513682	99513683	chr11:99513683:G:A	rs56061881	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	99773795	99773796	chr11:99773796:A:G	chr11:99773796:A:G	A	G	A	Sox1.mouse_HMG_4	11	1	-	6.009172079099756	-0.8712428350878128	TGAACTTGAATTCC
chr11	99928431	99928432	chr11:99928432:G:A	rs1817157	G	A	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr11	100316147	100316148	chr11:100316148:A:C	rs1216170	A	C	a	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	100359890	100359891	chr11:100359891:T:A	rs118132226	T	A	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	100608419	100608420	chr11:100608420:T:A	rs113836089	T	A	T	Sox1.mouse_HMG_4	11	1	+	10.821486245493436	3.941071331305868	TGAACTCCCATTCA
chr11	100640094	100640095	chr11:100640095:A:C	rs11224342	A	C	A	Sox1.mouse_HMG_4	10	1	-	6.048169655350246	2.6833487678472396	TGACTCCAAATTCA
chr11	100640109	100640110	chr11:100640110:T:G	rs143652086	T	G	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr11	100720333	100720334	chr11:100720334:G:C	rs4753981	G	C	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	100914795	100914796	chr11:100914796:A:G	rs74724827	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr11	100959847	100959848	chr11:100959848:G:A	rs6590829	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr11	101298925	101298926	chr11:101298926:T:G	rs1938984	T	G	T	Sox1.mouse_HMG_4	2	1	-	4.460367971347313	-2.448386807967906	TGAATATCCAGCCA
chr11	101438478	101438479	chr11:101438479:A:T	rs11224762	A	T	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr11	101575859	101575860	chr11:101575860:G:C	rs10501985	G	C	G	Sox1.mouse_HMG_4	5	1	-	5.1254240139470095	8.243360294947633	TGAACCAACATTCC
chr11	101687001	101687002	chr11:101687002:C:A	rs77636297	C	A	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr11	101816998	101816999	chr11:101816999:C:T	rs11225017	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	102726042	102726043	chr11:102726043:T:C	rs17099452	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.512548217667676	3.610998470493076	TGAATACTCATTTA
chr11	102785347	102785348	chr11:102785348:T:G	rs559518	T	G	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	102788747	102788748	chr11:102788748:C:T	rs17880553	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr11	103450387	103450388	chr11:103450388:C:T	rs557212	C	T	C	Sox1.mouse_HMG_4	6	1	+	5.8996105352183354	6.421824150458512	AGAATGCGCATTCA
chr11	103594460	103594461	chr11:103594461:A:G	rs77937499	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	103961210	103961211	chr11:103961211:T:C	chr11:103961211:T:C	T	C	T	Sox1.mouse_HMG_4	2	1	-	4.677831829207221	-2.2309229501079977	TGACTAGTCATTCT
chr11	103980255	103980256	chr11:103980256:T:C	rs79825996	T	C	T	Sox1.mouse_HMG_4	8	1	+	11.457964461007798	11.598995759334937	TGAATAGCTATGCA
chr11	104316998	104316999	chr11:104316999:C:T	rs11226298	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	105636438	105636439	chr11:105636439:T:C	rs12574741	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr11	105791318	105791319	chr11:105791319:C:T	rs1938967	C	T	T	Sox1.mouse_HMG_4	1	1	-	10.406430427531314	3.497675648216095	TGAATATAAATGCA
chr11	106373188	106373189	chr11:106373189:C:T	rs655810	C	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr11	106601451	106601452	chr11:106601452:A:G	rs17105864	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	107021002	107021003	chr11:107021003:G:A	rs12271377	G	A	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr11	107116866	107116867	chr11:107116867:G:A	rs11212035	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr11	107179241	107179242	chr11:107179242:T:G	rs957838	T	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr11	107313858	107313859	chr11:107313859:A:G	rs10789605	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr11	107313861	107313862	chr11:107313862:C:T	rs10789606	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr11	107722691	107722692	chr11:107722692:T:C	chr11:107722692:T:C	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr11	107778299	107778300	chr11:107778300:G:A	rs553663	G	A	G	Sox1.mouse_HMG_4	4	1	-	4.42303930084769	7.145056119675089	TAAACAAGCATTCA
chr11	108341068	108341069	chr11:108341069:A:G	rs79128456	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr11	108468316	108468317	chr11:108468317:C:T	rs17618313	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr11	108637756	108637757	chr11:108637757:G:A	rs78474882	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.499144734865308	4.358113436538168	GGTATAAACATTCA
chr11	109134638	109134639	chr11:109134639:C:T	rs1509731	C	T	c	Sox1.mouse_HMG_4	5	1	-	5.196931150751184	5.638710373356521	TGAACGATCATTAA
chr11	110027450	110027451	chr11:110027451:A:G	rs112990645	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr11	110101502	110101503	chr11:110101503:G:A	rs7128556	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr11	110436294	110436295	chr11:110436295:A:G	rs116914612	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	110471821	110471822	chr11:110471822:C:G	rs2298511	C	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	110729098	110729099	chr11:110729099:A:T	rs1395301	A	T	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr11	110747791	110747792	chr11:110747792:A:G	rs75896712	A	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr11	110760202	110760203	chr11:110760203:C:T	rs145613656	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr11	111148275	111148276	chr11:111148276:C:T	rs1900556	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr11	111178963	111178964	chr11:111178964:A:C	rs11213756	A	C	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr11	111200152	111200153	chr11:111200153:C:A	rs17461386	C	A	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr11	111281252	111281253	chr11:111281253:A:T	rs7121531	A	T	A	Sox1.mouse_HMG_4	9	1	+	6.757639489200912	-0.11812964392337122	TGAATTCTTATTCT
chr11	111718830	111718831	chr11:111718831:G:A	rs11213990	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr11	111745436	111745437	chr11:111745437:G:A	rs12279604	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr11	111819266	111819267	chr11:111819267:G:C	rs45586335	G	C	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr11	111819289	111819290	chr11:111819290:A:G	rs75319554	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	111819292	111819293	chr11:111819293:A:G	rs77002959	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr11	111956037	111956038	chr11:111956038:C:T	rs7931988	C	T	.	Sox1.mouse_HMG_4	12	1	+	4.857791981552506	-2.0509627977627147	TGGACTATTATTCA
chr11	112024468	112024469	chr11:112024469:G:T	rs73561950	G	T	G	Sox1.mouse_HMG_4	12	1	-	10.881729001710687	3.972974222395467	TGAATAAAAAGTCA
chr11	112265036	112265037	chr11:112265037:T:C	rs2564883	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr11	112822458	112822459	chr11:112822459:T:C	rs72999845	T	C	T	Sox1.mouse_HMG_4	2	1	-	8.267067879242669	1.3583130999274478	TGAAAAGCCATTCA
chr11	112835818	112835819	chr11:112835819:G:A	rs1397010879	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr11	113162002	113162003	chr11:113162003:C:T	rs556227854	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.3660744104978	-2.54268036881742	CGAACAGCAGTTCA
chr11	113537389	113537390	chr11:113537390:C:T	rs114940082	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr11	113674524	113674525	chr11:113674525:G:A	rs61903063	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr11	113876054	113876055	chr11:113876055:A:G	rs148955193	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr11	113948029	113948030	chr11:113948030:C:A	rs7129190	C	A	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	114114252	114114253	chr11:114114253:A:G	rs2073844	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr11	114426537	114426538	chr11:114426538:C:G	rs117778624	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr11	114533032	114533033	chr11:114533033:T:A	rs12282557	T	A	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	114533052	114533053	chr11:114533053:T:G	rs12282561	T	G	T	Sox1.mouse_HMG_4	8	1	-	11.462811795657231	12.221499793395672	TGAACATTAATTCA
chr11	115244968	115244969	chr11:115244969:T:G	rs12277228	T	G	T	Sox1.mouse_HMG_4	13	1	-	5.512158053004533	1.914076502432767	TGAACAGCCAGGCA
chr11	115531043	115531044	chr11:115531044:G:T	rs10891861	G	T	G	Sox1.mouse_HMG_4	12	1	-	4.763388819412313	-2.1453659599029073	GCAATAATCATTCA
chr11	115578571	115578572	chr11:115578572:A:T	rs11215603	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	115791345	115791346	chr11:115791346:A:G	rs4938219	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr11	115926819	115926820	chr11:115926820:A:G	rs7115420	A	G	A	Sox1.mouse_HMG_4	3	1	+	8.000528699005871	1.1131087892016744	TCAATGGTCATTCA
chr11	116249825	116249826	chr11:116249826:A:G	rs7103726	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr11	116351660	116351661	chr11:116351661:G:A	rs534437	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr11	116394389	116394390	chr11:116394390:T:C	rs555699	T	C	c	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	116553815	116553816	chr11:116553816:G:A	rs75212830	G	A	G	Sox1.mouse_HMG_4	1	1	+	11.314451640173061	4.405696860857842	TGAATATACAGTCA
chr11	116648866	116648867	chr11:116648867:C:G	rs516043	C	G	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	116657826	116657827	chr11:116657827:C:T	rs74444640	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr11	116690911	116690912	chr11:116690912:G:A	rs61905060	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr11	117027117	117027118	chr11:117027118:C:T	rs61905709	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.9950964485740545	4.854065150246915	GGAACATACAGTCA
chr11	117426698	117426699	chr11:117426699:C:A	rs7940638	C	A	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	117554824	117554825	chr11:117554825:C:T	rs12805320	C	T	C	Sox1.mouse_HMG_4	13	1	+	4.7883435113622	1.5036799459559962	TGAACTGCCAGTCC
chr11	117565069	117565070	chr11:117565070:C:A	rs12789727	C	A	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr11	117739671	117739672	chr11:117739672:G:A	rs10790203	G	A	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr11	117900274	117900275	chr11:117900275:A:G	rs73020466	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.0903511584509085	1.36833433962351	GGAATGAACCTTCA
chr11	117900282	117900283	chr11:117900283:C:A	rs543290	C	A	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	118118530	118118531	chr11:118118531:G:A	rs1941627	G	A	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr11	118166323	118166324	chr11:118166324:C:T	rs113739057	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr11	118180063	118180064	chr11:118180064:A:G	rs67163042	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	118727834	118727835	chr11:118727835:G:A	rs10892271	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	118746834	118746835	chr11:118746835:G:A	rs472641	G	A	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	119102756	119102757	chr11:119102757:C:G	rs116514494	C	G	C	Sox1.mouse_HMG_4	8	1	+	3.8593269852188223	-2.2026659205786947	GGAACTCCCAGTCA
chr11	119217465	119217466	chr11:119217466:A:G	rs11217188	A	G	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr11	119534227	119534228	chr11:119534228:C:T	rs61044489	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr11	119595167	119595168	chr11:119595168:A:G	rs7130618	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.1074304590872375	-2.768338674037043	TGAATGGCTATGTA
chr11	119762636	119762637	chr11:119762637:G:A	rs55829398	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr11	119762637	119762638	chr11:119762638:T:G	rs55724844	T	G	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	120023593	120023594	chr11:120023594:G:A	rs649451	G	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr11	120244860	120244861	chr11:120244861:A:T	rs2252520	A	T	A	Sox1.mouse_HMG_4	9	1	+	4.520607730501542	-2.3551614026227385	TGCATATTCATGCA
chr11	121099698	121099699	chr11:121099699:G:A	rs34178922	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr11	121268685	121268686	chr11:121268686:C:T	rs10790425	C	T	c	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	121284922	121284923	chr11:121284923:G:C	rs10892717	G	C	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr11	121449847	121449848	chr11:121449848:C:A	rs57785427	C	A	c	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	121488555	121488556	chr11:121488556:T:C	rs676759	T	C	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr11	121802937	121802938	chr11:121802938:T:C	rs142573943	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr11	121869608	121869609	chr11:121869609:C:A	rs7935547	C	A	c	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	121926813	121926814	chr11:121926814:G:T	rs10790478	G	T	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	122070160	122070161	chr11:122070161:T:C	rs149704618	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr11	122664699	122664700	chr11:122664700:T:C	rs10790519	T	C	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr11	122730910	122730911	chr11:122730911:T:C	rs12785310	T	C	T	Sox1.mouse_HMG_4	10	1	+	6.731629825863659	-0.14413930726062163	TGGATTCTTATTCA
chr11	122879717	122879718	chr11:122879718:A:G	rs1916039	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.486149487438651	0.5987295776344539	TGAAGTGCTATTCA
chr11	123125386	123125387	chr11:123125387:T:C	rs370104740	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.100163377407227	-2.7825817385707428	TGAGTGTTCATGCA
chr11	123183921	123183922	chr11:123183922:C:A	rs146191563	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr11	123514092	123514093	chr11:123514093:A:G	rs61906277	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	123671730	123671731	chr11:123671731:T:C	rs17674621	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr11	123926306	123926307	chr11:123926307:A:T	rs12226080	A	T	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr11	124071706	124071707	chr11:124071707:T:A	rs149687241	T	A	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr11	124071723	124071724	chr11:124071724:T:C	rs561460	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr11	124172938	124172939	chr11:124172939:T:A	rs2508880	T	A	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr11	124254962	124254963	chr11:124254963:A:G	rs2466717	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr11	124586395	124586396	chr11:124586396:G:T	rs76752135	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr11	124586396	124586397	chr11:124586397:A:C	chr11:124586397:A:C	A	C	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr11	125071412	125071413	chr11:125071413:A:G	rs12289616	A	G	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr11	125091888	125091889	chr11:125091889:G:C	rs758934106	G	C	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr11	125482689	125482690	chr11:125482690:C:A	rs582108	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr11	125773760	125773761	chr11:125773761:G:C	rs510221	G	C	G	Sox1.mouse_HMG_4	3	1	-	6.898504255746063	3.8015701016831054	TGACTAAGCAGTCA
chr11	125942515	125942516	chr11:125942516:A:T	rs652336	A	T	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr11	125956691	125956692	chr11:125956692:G:A	rs965561510	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr11	125978586	125978587	chr11:125978587:T:C	rs636268	T	C	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr11	125983420	125983421	chr11:125983421:T:C	rs113615738	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr11	126225671	126225672	chr11:126225672:C:G	rs10790795	C	G	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr11	126565186	126565187	chr11:126565187:G:A	rs489725	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr11	126565189	126565190	chr11:126565190:C:A	rs114268125	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr11	126638996	126638997	chr11:126638997:A:G	rs57651982	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr11	127013726	127013727	chr11:127013727:T:C	rs521381	T	C	T	Sox1.mouse_HMG_4	2	1	-	7.724062326623835	0.8153075473086144	TGAAATGTTATTCA
chr11	127042562	127042563	chr11:127042563:A:T	rs142263059	A	T	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	127818653	127818654	chr11:127818654:G:C	rs10790923	G	C	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr11	128174286	128174287	chr11:128174287:T:C	rs10893831	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.7262478815492495	-0.15649723442871988	TGAATTAAAATCCA
chr11	128235931	128235932	chr11:128235932:A:C	rs36083239	A	C	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr11	128364407	128364408	chr11:128364408:C:G	rs2067946	C	G	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr11	128452316	128452317	chr11:128452317:A:G	rs6590332	A	G	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	128576100	128576101	chr11:128576101:C:T	rs188442373	C	T	C	Sox1.mouse_HMG_4	4	1	-	4.267755252179366	4.267755252179366	GGAAGTGTCATTCA
chr11	128840549	128840550	chr11:128840550:T:C	rs637992	T	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	128902922	128902923	chr11:128902923:A:G	rs192123673	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr11	129211492	129211493	chr11:129211493:T:C	rs10893995	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr11	129252662	129252663	chr11:129252663:A:G	rs7941048	A	G	A	Sox1.mouse_HMG_4	9	1	+	6.179203666922143	2.8143827794191374	TGAATTTGCATTAA
chr11	129331596	129331597	chr11:129331597:G:A	rs79973485	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	129700075	129700076	chr11:129700076:A:G	rs7122475	A	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr11	129700101	129700102	chr11:129700102:T:C	rs7108279	T	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr11	129710059	129710060	chr11:129710060:C:T	rs113582974	C	T	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr11	129749774	129749775	chr11:129749775:A:G	rs571168	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	129979064	129979065	chr11:129979065:C:T	rs55691920	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr11	130103605	130103606	chr11:130103606:C:T	rs187925603	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr11	130158108	130158109	chr11:130158109:G:A	rs117780129	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr11	130340692	130340693	chr11:130340693:T:C	rs17139358	T	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr11	130544529	130544530	chr11:130544530:C:T	rs1733430	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr11	130871386	130871387	chr11:130871387:C:T	rs73024809	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr11	131043893	131043894	chr11:131043894:A:G	rs1030344	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.222130512052558	0.8573096245495508	TCAATGGACATGCA
chr11	131186524	131186525	chr11:131186525:C:T	rs77507913	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr11	131455972	131455973	chr11:131455973:T:C	rs10894394	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr11	131456020	131456021	chr11:131456021:G:A	rs10894395	G	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr11	131811482	131811483	chr11:131811483:G:A	rs1527772	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr11	131866673	131866674	chr11:131866674:C:T	rs12287321	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr11	131986006	131986007	chr11:131986007:A:G	rs534902795	A	G	A	Sox1.mouse_HMG_4	6	1	+	10.353064097057205	10.434644826484496	TGAATCAGTATTCA
chr11	132059545	132059546	chr11:132059546:T:A	rs11222893	T	A	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr11	132059561	132059562	chr11:132059562:G:T	rs11222894	G	T	G	Sox1.mouse_HMG_4	9	1	+	6.671646114890167	3.1606978692688923	TGAACTCAAGTTCA
chr11	132076953	132076954	chr11:132076954:C:T	rs1547896	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr11	132160009	132160010	chr11:132160010:G:A	rs12419402	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr11	132401828	132401829	chr11:132401829:T:C	rs12421244	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr11	132451609	132451610	chr11:132451610:A:G	rs11223079	A	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr11	132685268	132685269	chr11:132685269:A:C	rs1784526	A	C	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr11	132729289	132729290	chr11:132729290:C:T	rs1939525	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr11	133526520	133526521	chr11:133526521:A:G	rs4372469	A	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr11	133692828	133692829	chr11:133692829:A:C	rs11223561	A	C	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr11	134445604	134445605	chr11:134445605:G:A	rs11223816	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr11	134562155	134562156	chr11:134562156:G:A	rs4936241	G	A	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr11	134656263	134656264	chr11:134656264:T:C	rs113755321	T	C	-	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr11	134679915	134679916	chr11:134679916:T:C	rs114793946	T	C	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr11	134760500	134760501	chr11:134760501:A:C	rs73031766	A	C	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	134798840	134798841	chr11:134798841:C:T	rs188375675	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr11	134865569	134865570	chr11:134865570:A:G	rs7951054	A	G	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr11	134954043	134954044	chr11:134954044:A:T	rs78296108	A	T	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr11	134954776	134954777	chr11:134954777:C:T	rs10750585	C	T	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr11	135001703	135001704	chr11:135001704:G:T	rs60887583	G	T	.	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	100502	100503	chr12:100503:T:C	rs7315421	T	C	.	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr12	818921	818922	chr12:818922:A:G	rs116361359	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr12	907743	907744	chr12:907744:T:C	rs2277869	T	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr12	1171931	1171932	chr12:1171932:T:A	rs16928249	T	A	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr12	1578918	1578919	chr12:1578919:C:G	rs78690218	C	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr12	1649135	1649136	chr12:1649136:G:A	rs2369973	G	A	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr12	1794223	1794224	chr12:1794224:A:T	rs10128890	A	T	A	Sox1.mouse_HMG_4	10	1	-	9.14108170536868	2.265312572244399	TGAATTAGAATGCA
chr12	2063763	2063764	chr12:2063764:C:T	rs55666250	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	2150666	2150667	chr12:2150667:T:C	rs75381140	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr12	2895333	2895334	chr12:2895334:A:G	rs10848722	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr12	3022361	3022362	chr12:3022362:C:T	rs12579163	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr12	3103244	3103245	chr12:3103245:A:G	rs73247348	A	G	a	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	3103439	3103440	chr12:3103440:G:A	rs11062500	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	3269984	3269985	chr12:3269985:T:C	rs34592797	T	C	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	3362099	3362100	chr12:3362100:C:T	rs7138508	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr12	3634591	3634592	chr12:3634592:G:A	rs147008543	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr12	3664690	3664691	chr12:3664691:A:G	rs11062756	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr12	3951721	3951722	chr12:3951722:T:C	rs2578467	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr12	4048986	4048987	chr12:4048987:G:A	rs79035418	G	A	g	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr12	4063959	4063960	chr12:4063960:A:G	rs11062987	A	G	A	Sox1.mouse_HMG_4	5	1	-	7.724062326623835	4.804233916494748	TGAAATGTTATTCA
chr12	4116526	4116527	chr12:4116527:C:T	rs77534921	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	4116564	4116565	chr12:4116565:T:G	rs553035354	T	G	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	4213685	4213686	chr12:4213686:C:G	rs67684915	C	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	4224036	4224037	chr12:4224037:G:T	rs7954847	G	T	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	4296637	4296638	chr12:4296638:G:A	rs3217906	G	A	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr12	4608387	4608388	chr12:4608388:A:G	rs78395662	A	G	A	Sox1.mouse_HMG_4	3	1	+	10.072660138980789	3.1852402291765927	TGAATATGTATGCA
chr12	4849253	4849254	chr12:4849254:G:A	rs184372204	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr12	4939534	4939535	chr12:4939535:G:A	rs1990388	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr12	4959144	4959145	chr12:4959145:C:T	rs7954150	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr12	5031363	5031364	chr12:5031364:T:C	rs6489601	T	C	C	Sox1.mouse_HMG_4	13	1	-	6.325217010286495	-0.5575281056914747	TGAATACGCATACA
chr12	5123956	5123957	chr12:5123957:T:A	rs542059	T	A	T	Sox1.mouse_HMG_4	7	1	-	7.9852315987156794	8.249475683262684	TGAATAAATAGGCA
chr12	5124238	5124239	chr12:5124239:G:A	rs11063514	G	A	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr12	5126556	5126557	chr12:5126557:G:A	rs565246	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr12	5634042	5634043	chr12:5634043:T:G	rs74056074	T	G	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr12	5634047	5634048	chr12:5634048:G:A	rs1558508	G	A	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	5722784	5722785	chr12:5722785:T:C	rs71459966	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr12	5731057	5731058	chr12:5731058:T:C	rs34097431	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr12	5901681	5901682	chr12:5901682:C:T	rs141944558	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr12	6040571	6040572	chr12:6040572:T:G	rs11064004	T	G	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr12	6063302	6063303	chr12:6063303:C:T	rs888879207	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr12	6436364	6436365	chr12:6436365:A:G	rs2364493	A	G	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr12	6473111	6473112	chr12:6473112:T:C	rs10849466	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	6473163	6473164	chr12:6473164:C:T	rs12316668	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr12	6964837	6964838	chr12:6964838:T:C	rs764962239	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr12	7154150	7154151	chr12:7154151:A:C	rs763593977	A	C	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr12	7304002	7304003	chr12:7304003:G:A	rs72653462	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	7747587	7747588	chr12:7747588:C:T	rs10845821	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr12	7792338	7792339	chr12:7792339:T:C	rs11611389	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr12	7874037	7874038	chr12:7874038:C:T	rs7303617	C	T	c	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	7874078	7874079	chr12:7874079:T:C	rs7313357	T	C	t	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	8083226	8083227	chr12:8083227:C:A	rs370126021	C	A	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr12	8181453	8181454	chr12:8181454:C:T	rs143242142	C	T	a	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	8695380	8695381	chr12:8695381:G:C	rs182768560	G	C	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	9320046	9320047	chr12:9320047:G:A	rs4271437	G	A	g	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	9364626	9364627	chr12:9364627:C:G	rs187189124	C	G	c	Sox1.mouse_HMG_4	5	1	-	10.993262871003154	7.87532659000253	TGAACGCACATTCA
chr12	9411733	9411734	chr12:9411734:C:T	rs201959792	C	T	.	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr12	9471645	9471646	chr12:9471646:A:C	rs10843860	A	C	.	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr12	9591059	9591060	chr12:9591060:A:G	rs10743778	A	G	.	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr12	9651336	9651337	chr12:9651337:T:G	rs11830731	T	G	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr12	9667561	9667562	chr12:9667562:A:T	rs138575935	A	T	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr12	9670677	9670678	chr12:9670678:T:A	rs10844380	T	A	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	9701557	9701558	chr12:9701558:G:C	rs12830448	G	C	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	9735956	9735957	chr12:9735957:A:G	rs10772093	A	G	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	9755832	9755833	chr12:9755833:A:G	rs766502	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr12	10098129	10098130	chr12:10098130:G:A	rs7977902	G	A	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr12	10234506	10234507	chr12:10234507:A:T	rs113247892	A	T	A	Sox1.mouse_HMG_4	0	1	-	7.384849560523233	0.5206073938728444	TGAATGTCCAGGCA
chr12	10499193	10499194	chr12:10499194:T:C	rs73060473	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr12	10615733	10615734	chr12:10615734:C:G	rs1045530541	C	G	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr12	10615743	10615744	chr12:10615744:G:A	rs10845184	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr12	10673558	10673559	chr12:10673559:C:T	rs2418096	C	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr12	11071016	11071017	chr12:11071017:C:T	rs73045543	C	T	c	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr12	11171064	11171065	chr12:11171065:C:G	rs117039418	C	G	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr12	11729327	11729328	chr12:11729328:A:G	rs1270942580	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr12	11814925	11814926	chr12:11814926:G:A	rs1276980591	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr12	11959052	11959053	chr12:11959053:G:C	rs4763742	G	C	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr12	12091953	12091954	chr12:12091954:T:C	rs1612841	T	C	C	Sox1.mouse_HMG_4	10	1	+	3.673067911195443	-3.2027012219288373	AGAATAGGCATTCC
chr12	12443064	12443065	chr12:12443065:T:C	rs16908076	T	C	t	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr12	12461560	12461561	chr12:12461561:A:G	rs10845551	A	G	G	Sox1.mouse_HMG_4	0	1	-	8.129468753827856	4.227919006653256	TGAATAAACTTTCA
chr12	12475574	12475575	chr12:12475575:C:T	rs17378260	C	T	C	Sox1.mouse_HMG_4	9	1	+	4.469665928527027	4.469665928527027	TGAATATTCCTTCC
chr12	12503523	12503524	chr12:12503524:G:A	rs12581531	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr12	12565038	12565039	chr12:12565039:T:G	rs186852040	T	G	T	Sox1.mouse_HMG_4	13	1	-	5.113389655497874	1.5153081049261092	TGAACTGTCCTTCA
chr12	12707481	12707482	chr12:12707482:A:G	rs10845613	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr12	12718484	12718485	chr12:12718485:T:G	rs3093730	T	G	T	Sox1.mouse_HMG_4	8	1	-	6.451356152492572	7.210044150231015	TGACTTAAAAGTCA
chr12	12747979	12747980	chr12:12747980:G:C	rs7980460	G	C	g	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr12	13120679	13120680	chr12:13120680:T:C	rs151125981	T	C	T	Sox1.mouse_HMG_4	2	1	-	4.541942600012565	-2.3668121793026566	TGATTATTCATGCA
chr12	13183666	13183667	chr12:13183667:T:G	rs191801655	T	G	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr12	13314045	13314046	chr12:13314046:G:T	rs17397517	G	T	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr12	14164412	14164413	chr12:14164413:T:C	rs11609703	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr12	14166965	14166966	chr12:14166966:C:A	rs17341318	C	A	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr12	14947890	14947891	chr12:14947891:T:C	rs11541210	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.188039970001726	4.466023151174327	TGACTCTATATTCA
chr12	14961553	14961554	chr12:14961554:T:A	rs145108104	T	A	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr12	15114637	15114638	chr12:15114638:G:A	rs374197279	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr12	15150858	15150859	chr12:15150859:A:T	rs7131893	A	T	T	Sox1.mouse_HMG_4	0	1	-	8.267624157672401	1.40338199102201	TGAACAGCAGTTCA
chr12	15181929	15181930	chr12:15181930:C:G	rs35401286	C	G	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr12	15279479	15279480	chr12:15279480:C:T	rs192303373	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr12	15279501	15279502	chr12:15279502:C:A	rs56766674	C	A	C	Sox1.mouse_HMG_4	13	1	+	6.383268881962646	9.981350432534411	TGAATTGGCATGCC
chr12	15527942	15527943	chr12:15527943:C:T	rs35086668	C	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	15978823	15978824	chr12:15978824:C:T	rs2061752	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	16163403	16163404	chr12:16163404:G:A	rs7954112	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	16365727	16365728	chr12:16365728:T:C	rs1024834	T	C	C	Sox1.mouse_HMG_4	10	1	+	4.140549782625268	-2.7352193504990128	TGCATGAACATGCA
chr12	16365734	16365735	chr12:16365735:G:A	rs9332955	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr12	18141445	18141446	chr12:18141446:G:T	rs11043891	G	T	.	Sox1.mouse_HMG_4	12	1	-	6.555012558684401	-0.35374222063082006	GGAATTCACAGTCA
chr12	18191867	18191868	chr12:18191868:A:G	rs10743259	A	G	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr12	18602235	18602236	chr12:18602236:G:C	rs73068391	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr12	18646447	18646448	chr12:18646448:C:T	rs520242	C	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr12	18658117	18658118	chr12:18658118:G:A	rs12579778	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.441599482247512	-2.467155297067708	TGAACTTACTTTCA
chr12	18837393	18837394	chr12:18837394:A:G	rs1982849	A	G	G	Sox1.mouse_HMG_4	3	1	+	8.623418242823908	1.7359983330197113	TGAACATTCATTCC
chr12	18878399	18878400	chr12:18878400:C:G	rs1490727	C	G	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr12	19029837	19029838	chr12:19029838:A:G	rs1018298	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr12	19121872	19121873	chr12:19121873:G:T	rs992601	G	T	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr12	19553928	19553929	chr12:19553929:G:T	rs56059528	G	T	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	19674195	19674196	chr12:19674196:A:T	rs73348958	A	T	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr12	19744603	19744604	chr12:19744604:A:T	rs11044833	A	T	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr12	19794395	19794396	chr12:19794396:T:C	rs4762910	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.1899475464367315	0.30720243045876217	TGAATTTCCTTTCA
chr12	20409125	20409126	chr12:20409126:A:G	rs1444631	A	G	a	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	20473295	20473296	chr12:20473296:A:G	rs142016500	A	G	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr12	20641160	20641161	chr12:20641161:A:G	rs4630342	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr12	21386402	21386403	chr12:21386403:A:G	rs7964783	A	G	G	Sox1.mouse_HMG_4	9	1	+	4.2373249237535076	0.8725040362505014	TGAATTGTCACTCC
chr12	21615111	21615112	chr12:21615112:A:G	rs1981948	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr12	21650984	21650985	chr12:21650985:A:C	rs1677083	A	C	C	Sox1.mouse_HMG_4	2	1	+	3.7751555435127084	-3.133599235802513	TGAAAAGGCATGCA
chr12	21882938	21882939	chr12:21882939:C:T	rs1356368	C	T	T	Sox1.mouse_HMG_4	6	1	+	4.682485746704076	5.204699361944254	TGAACACTTACTCA
chr12	21882948	21882949	chr12:21882949:T:G	rs1283802	T	G	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	22894007	22894008	chr12:22894008:G:A	rs2466969	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr12	23120059	23120060	chr12:23120060:T:C	rs1406772	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	23666889	23666890	chr12:23666890:T:A	rs10842207	T	A	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr12	24027627	24027628	chr12:24027628:C:T	rs16926996	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr12	24027651	24027652	chr12:24027652:G:A	rs1909350	G	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr12	24189154	24189155	chr12:24189155:C:T	rs12315411	C	T	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr12	24189166	24189167	chr12:24189167:C:T	rs7132541	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr12	24425233	24425234	chr12:24425234:A:G	rs56831089	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr12	24444851	24444852	chr12:24444852:C:T	rs11047442	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr12	24470472	24470473	chr12:24470473:G:A	rs7299191	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	24470525	24470526	chr12:24470526:A:G	rs117456179	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr12	24563059	24563060	chr12:24563060:C:T	rs896574053	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr12	24697624	24697625	chr12:24697625:T:C	rs10842395	T	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr12	24705677	24705678	chr12:24705678:G:A	rs9668677	G	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	25135995	25135996	chr12:25135996:C:A	rs11047855	C	A	C	Sox1.mouse_HMG_4	6	1	+	7.399856784468187	8.248035758984432	TGAATACTTATCCA
chr12	25453252	25453253	chr12:25453253:C:G	rs12829243	C	G	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	25573409	25573410	chr12:25573410:T:C	rs151166049	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr12	25684375	25684376	chr12:25684376:G:A	rs11048175	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr12	25785062	25785063	chr12:25785063:G:A	rs6487513	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	25812415	25812416	chr12:25812416:A:G	rs12423385	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr12	25875913	25875914	chr12:25875914:A:G	rs1488822	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr12	25934083	25934084	chr12:25934084:T:C	rs1691902	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr12	26016796	26016797	chr12:26016797:T:A	rs949849	T	A	A	Sox1.mouse_HMG_4	6	1	-	5.259766235844199	4.933800876568131	TAAACAACTATTCA
chr12	26027501	26027502	chr12:26027502:A:G	rs61914243	A	G	A	Sox1.mouse_HMG_4	4	1	-	7.274635378482493	4.552618559655094	TAAATACCCATTCA
chr12	26028115	26028116	chr12:26028116:G:A	rs2729633	G	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr12	26119600	26119601	chr12:26119601:C:A	rs146921383	C	A	C	Sox1.mouse_HMG_4	6	1	-	7.627737064195524	7.220190975492166	TGAACTGCAAGTCA
chr12	26123824	26123825	chr12:26123825:A:G	rs7972225	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr12	26195044	26195045	chr12:26195045:A:G	rs12818979	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	26469164	26469165	chr12:26469165:T:A	rs2170980	T	A	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr12	26782952	26782953	chr12:26782953:C:T	rs61920578	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	26791323	26791324	chr12:26791324:T:A	rs76183007	T	A	t	Sox1.mouse_HMG_4	13	1	-	6.495725606444306	-0.3870195095336637	TGAATTCATATACA
chr12	26857678	26857679	chr12:26857679:C:A	rs112851961	C	A	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr12	26919195	26919196	chr12:26919196:A:G	rs950158	A	G	a	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr12	26919218	26919219	chr12:26919219:A:T	rs4353353	A	T	A	Sox1.mouse_HMG_4	7	1	-	4.877212017230385	4.6129679326833815	TGAATAGTCTTTCC
chr12	27645210	27645211	chr12:27645211:T:C	rs17801352	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	27674611	27674612	chr12:27674612:G:A	rs10771355	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr12	27817807	27817808	chr12:27817808:C:G	rs10771376	C	G	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr12	27973821	27973822	chr12:27973822:C:G	rs75908589	C	G	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr12	28029318	28029319	chr12:28029319:T:C	rs11049295	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr12	28094287	28094288	chr12:28094288:A:G	rs11049342	A	G	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr12	28129113	28129114	chr12:28129114:A:G	rs7305286	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	28603763	28603764	chr12:28603764:A:G	rs1512569	A	G	A	Sox1.mouse_HMG_4	5	1	+	5.315015719909668	4.8732364973043305	TGAACAGATATTTA
chr12	28788462	28788463	chr12:28788463:A:G	rs4931094	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr12	29049041	29049042	chr12:29049042:G:A	rs7300122	G	A	A	Sox1.mouse_HMG_4	6	1	+	7.395219578926922	7.313638849499632	GGAACTGCAATTCA
chr12	29166604	29166605	chr12:29166605:A:T	rs34339523	A	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr12	29199321	29199322	chr12:29199322:G:A	rs11050117	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr12	29279204	29279205	chr12:29279205:T:C	rs7979654	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr12	29282546	29282547	chr12:29282547:G:A	rs2015599	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	29404089	29404090	chr12:29404090:A:C	rs11608324	A	C	C	Sox1.mouse_HMG_4	3	1	+	8.240736633880847	4.450250878139607	TGAAAAGACATTCA
chr12	29517283	29517284	chr12:29517284:G:A	rs58461380	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr12	29742039	29742040	chr12:29742040:C:T	rs79598393	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr12	29961483	29961484	chr12:29961484:G:A	rs16935131	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	30048148	30048149	chr12:30048149:A:G	rs11830554	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr12	30144717	30144718	chr12:30144718:G:A	rs1552343	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr12	30149092	30149093	chr12:30149093:C:T	rs1586284	C	T	T	Sox1.mouse_HMG_4	12	1	+	11.17342034184592	4.264665562530701	TGAATATATAGTCA
chr12	30153091	30153092	chr12:30153092:C:G	rs10771649	C	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	30164756	30164757	chr12:30164757:G:A	rs7963655	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	30178754	30178755	chr12:30178755:G:A	rs1485412	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr12	30197802	30197803	chr12:30197803:C:G	rs75388092	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	30662973	30662974	chr12:30662974:C:T	rs10743728	C	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr12	30782557	30782558	chr12:30782558:G:A	rs79423681	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr12	30865921	30865922	chr12:30865922:G:A	rs192286	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr12	30931998	30931999	chr12:30931999:G:A	rs143266004	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr12	31326906	31326907	chr12:31326907:A:G	rs11051388	A	G	A	Sox1.mouse_HMG_4	7	1	-	5.638710373356522	5.40079753417134	TTAACAATCATTCA
chr12	31385131	31385132	chr12:31385132:T:G	rs2892638	T	G	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr12	31624375	31624376	chr12:31624376:C:G	rs2625878	C	G	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr12	31894895	31894896	chr12:31894896:G:A	rs1259877	G	A	G	Sox1.mouse_HMG_4	0	1	+	7.287307604137811	4.020403810259029	GGAACTAAAATTCA
chr12	32063357	32063358	chr12:32063358:T:G	rs2630573	T	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	32148689	32148690	chr12:32148690:A:G	rs1151012	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr12	32589524	32589525	chr12:32589525:G:A	rs77841044	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr12	32754236	32754237	chr12:32754237:C:T	rs559486105	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr12	32754237	32754238	chr12:32754238:A:G	rs116033296	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	32870720	32870721	chr12:32870721:T:G	rs17543896	T	G	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr12	33532722	33532723	chr12:33532723:A:T	rs11615703	A	T	T	Sox1.mouse_HMG_4	3	1	+	8.98774964906578	2.100329739261582	TGAACCATCATTCA
chr12	34524548	34524549	chr12:34524549:G:A	rs9705973	G	A	.	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr12	38056244	38056245	chr12:38056245:G:A	rs4882310	G	A	.	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	38283605	38283606	chr12:38283606:T:C	rs1843910	T	C	c	Sox1.mouse_HMG_4	10	1	-	4.9723583571707355	8.483306602792009	TGAACTGTTAATCA
chr12	38325269	38325270	chr12:38325270:G:A	rs11183330	G	A	g	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	38547800	38547801	chr12:38547801:T:C	rs151250275	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr12	39452324	39452325	chr12:39452325:T:G	rs7294474	T	G	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr12	39935629	39935630	chr12:39935630:A:C	rs7960023	A	C	A	Sox1.mouse_HMG_4	10	1	-	8.301276623284071	4.936455735781064	TGAATAGTTATTTA
chr12	40038459	40038460	chr12:40038460:G:A	rs2896825	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr12	40208421	40208422	chr12:40208422:T:G	rs1491932	T	G	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr12	41014514	41014515	chr12:41014515:G:A	rs114746486	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr12	41127338	41127339	chr12:41127339:A:G	rs17129051	A	G	G	Sox1.mouse_HMG_4	0	1	-	4.450472371515428	0.5489226243408285	TGAACAGGCAGTCC
chr12	41352441	41352442	chr12:41352442:T:G	rs2405912	T	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	41715078	41715079	chr12:41715079:C:G	rs1497181	C	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	41966162	41966163	chr12:41966163:C:T	rs140805603	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	42039246	42039247	chr12:42039247:G:T	rs12299325	G	T	g	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr12	42084753	42084754	chr12:42084754:A:C	rs17224170	A	C	a	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	42134981	42134982	chr12:42134982:C:G	rs3852594	C	G	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr12	42473346	42473347	chr12:42473347:G:C	rs151329987	G	C	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr12	42692214	42692215	chr12:42692215:A:G	rs113824862	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.8866223308717025	1.0108531977474209	TGAACGTCTATGCA
chr12	42967977	42967978	chr12:42967978:G:A	rs1402357	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr12	43005334	43005335	chr12:43005335:T:C	rs147958176	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.486375803565943	3.5848260563913437	TGAATTAACGTGCA
chr12	43348658	43348659	chr12:43348659:T:C	rs10880464	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr12	44655149	44655150	chr12:44655150:C:T	rs1452260	C	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr12	44788856	44788857	chr12:44788857:A:G	rs11182676	A	G	G	Sox1.mouse_HMG_4	10	1	-	4.335542099856062	-2.540227033268218	CGAACTGCCATGCA
chr12	44836282	44836283	chr12:44836283:G:A	rs146276577	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr12	44930143	44930144	chr12:44930144:C:A	rs113175023	C	A	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr12	44973114	44973115	chr12:44973115:T:C	rs139191435	T	C	T	Sox1.mouse_HMG_4	13	1	-	5.484386883364459	-1.3983582326135107	TGAACAGACATACA
chr12	45256912	45256913	chr12:45256913:A:G	rs11182950	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr12	45587330	45587331	chr12:45587331:A:G	rs4768092	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr12	45654335	45654336	chr12:45654336:T:A	rs7974245	T	A	A	Sox1.mouse_HMG_4	11	1	+	5.603177177976327	-1.2772377362112428	TGACTTCAAAGTCA
chr12	45767520	45767521	chr12:45767521:G:C	rs7965783	G	C	G	Sox1.mouse_HMG_4	4	1	-	4.362678643123968	0.23861347945278677	TGACCTGCCATTCC
chr12	45966633	45966634	chr12:45966634:G:A	rs75091769	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr12	46209356	46209357	chr12:46209357:C:T	rs79586812	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	46365352	46365353	chr12:46365353:T:C	rs7968283	T	C	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	46558196	46558197	chr12:46558197:C:T	rs12312855	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr12	46660870	46660871	chr12:46660871:A:C	rs12296535	A	C	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr12	46785533	46785534	chr12:46785534:A:G	rs180431	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr12	47041534	47041535	chr12:47041535:A:G	rs7971230	A	G	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr12	47356665	47356666	chr12:47356666:A:G	rs149541564	A	G	A	Sox1.mouse_HMG_4	9	1	+	10.03765087849069	6.672829990987683	TGAATTCCTAGTCA
chr12	47357091	47357092	chr12:47357092:A:C	rs215376	A	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr12	47414200	47414201	chr12:47414201:G:A	rs4329752	G	A	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	47554593	47554594	chr12:47554594:C:T	rs12302370	C	T	c	Sox1.mouse_HMG_4	0	1	+	10.962656841450396	14.864206588624995	CGAATAAATATTCA
chr12	47767404	47767405	chr12:47767405:A:T	rs76440607	A	T	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr12	47999353	47999354	chr12:47999354:C:T	rs1635533	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr12	48189983	48189984	chr12:48189984:C:T	rs146739938	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr12	48387056	48387057	chr12:48387057:A:T	rs4760702	A	T	a	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	48492700	48492701	chr12:48492701:C:T	rs2731106	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr12	48535831	48535832	chr12:48535832:T:C	rs7962421	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	48865805	48865806	chr12:48865806:G:A	rs144933576	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr12	49209363	49209364	chr12:49209364:A:G	rs12309994	A	G	g	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr12	49808921	49808922	chr12:49808922:C:G	rs114225221	C	G	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr12	49808927	49808928	chr12:49808928:G:A	rs897059	G	A	G	Sox1.mouse_HMG_4	0	1	+	3.995509481305194	0.7286056874264124	GGAATTGCCATCCA
chr12	49879766	49879767	chr12:49879767:C:T	rs2924703	C	T	-	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr12	50519595	50519596	chr12:50519596:C:T	rs755958774	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr12	51188264	51188265	chr12:51188265:G:A	rs111665877	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr12	51925389	51925390	chr12:51925390:G:T	rs706823	G	T	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr12	52006145	52006146	chr12:52006146:T:C	rs113680730	T	C	T	Sox1.mouse_HMG_4	11	1	+	3.945717112369156	-2.9346978018184133	TGAACTCCCACTCA
chr12	52006150	52006151	chr12:52006151:C:T	rs74583694	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	52006166	52006167	chr12:52006167:C:G	rs148859231	C	G	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr12	52252856	52252857	chr12:52252857:G:A	rs114943813	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr12	52427376	52427377	chr12:52427377:C:G	rs10876289	C	G	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr12	52567925	52567926	chr12:52567926:G:A	rs79199336	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.902246991739662	-2.0065077875755586	TGAAGAGCCAGTCA
chr12	52656489	52656490	chr12:52656490:A:C	rs11170224	A	C	a	Sox1.mouse_HMG_4	6	1	-	7.06794078539013	7.475486874093489	TGAATATCAGTGCA
chr12	52656495	52656496	chr12:52656496:A:G	rs11170225	A	G	g	Sox1.mouse_HMG_4	0	1	-	7.06794078539013	3.1663910382155303	TGAATATCAGTGCA
chr12	52787685	52787686	chr12:52787686:T:G	rs4919753	T	G	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr12	52876082	52876083	chr12:52876083:C:G	rs10876384	C	G	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr12	52876346	52876347	chr12:52876347:C:G	rs2682307	C	G	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	53427757	53427758	chr12:53427758:A:G	rs10876454	A	G	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr12	53830895	53830896	chr12:53830896:C:T	rs12822602	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr12	54259473	54259474	chr12:54259474:G:A	rs4759073	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	54678808	54678809	chr12:54678809:C:T	rs11171016	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr12	55501753	55501754	chr12:55501754:C:T	rs7304684	C	T	c	Sox1.mouse_HMG_4	13	1	+	6.398722838125689	3.1140592727194853	CGAATTTATATTCC
chr12	55641671	55641672	chr12:55641672:T:C	rs11171632	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.880884669691026	-2.006535240113172	TGAATAATTAGTCT
chr12	55841031	55841032	chr12:55841032:T:C	chr12:55841032:T:C	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	56160630	56160631	chr12:56160631:G:C	rs61938990	G	C	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr12	56714418	56714419	chr12:56714419:A:G	rs4902	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr12	57627295	57627296	chr12:57627296:G:A	rs764712156	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr12	57627307	57627308	chr12:57627308:G:C	rs12320537	G	C	G	Sox1.mouse_HMG_4	13	1	-	7.54780671886016	4.263143153453957	TGAATCTCCATTCC
chr12	58420586	58420587	chr12:58420587:G:A	rs74097143	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	58434954	58434955	chr12:58434955:A:G	rs4760216	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr12	58458475	58458476	chr12:58458476:C:T	rs3907503	C	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr12	58459458	58459459	chr12:58459459:A:C	rs3900145	A	C	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr12	58844603	58844604	chr12:58844604:A:G	rs11172758	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr12	59445056	59445057	chr12:59445057:G:A	rs371247031	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr12	59445090	59445091	chr12:59445091:A:C	rs143312574	A	C	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr12	59590905	59590906	chr12:59590906:G:A	rs1391130	G	A	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr12	59613146	59613147	chr12:59613147:G:A	rs7305326	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	59737294	59737295	chr12:59737295:T:C	rs2244244	T	C	C	Sox1.mouse_HMG_4	0	1	+	6.697908016421597	2.7963582692469977	TGAATTAAAATTGA
chr12	59927701	59927702	chr12:59927702:T:C	rs11173245	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr12	60197781	60197782	chr12:60197782:G:C	rs10784033	G	C	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr12	60476797	60476798	chr12:60476798:T:G	rs116849721	T	G	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr12	60522830	60522831	chr12:60522831:T:C	rs7131721	T	C	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr12	62103845	62103846	chr12:62103846:A:G	rs80239013	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	62106521	62106522	chr12:62106522:T:C	rs73123987	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	62186646	62186647	chr12:62186647:C:T	rs77999070	C	T	c	Sox1.mouse_HMG_4	8	1	+	4.413909326684789	4.272878028357648	TAACTAGCCATTCA
chr12	62189108	62189109	chr12:62189109:G:A	rs1920089	G	A	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr12	62603012	62603013	chr12:62603013:G:T	rs144717278	G	T	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr12	62695732	62695733	chr12:62695733:T:C	rs11174605	T	C	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr12	62696042	62696043	chr12:62696043:C:G	rs4763027	C	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr12	62783953	62783954	chr12:62783954:G:A	rs546913975	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr12	62995419	62995420	chr12:62995420:A:G	rs17738403	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	63086415	63086416	chr12:63086416:C:T	rs11174770	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr12	63288185	63288186	chr12:63288186:G:A	rs141344258	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr12	63305311	63305312	chr12:63305312:G:A	rs1146110	G	A	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr12	63532974	63532975	chr12:63532975:T:C	rs12317048	T	C	t	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr12	63889464	63889465	chr12:63889465:T:A	chr12:63889465:T:A	T	A	T	Sox1.mouse_HMG_4	7	1	+	4.173736993501921	3.909492908954915	TGAATACTCAGTCT
chr12	64043051	64043052	chr12:64043052:C:T	rs182268387	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr12	64043056	64043057	chr12:64043057:A:G	rs78293181	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	64299584	64299585	chr12:64299585:G:A	rs1347576	G	A	G	Sox1.mouse_HMG_4	7	1	+	6.616353064536323	7.567780052498151	GGAATATGCATGCA
chr12	64323961	64323962	chr12:64323962:T:C	rs1865801	T	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr12	65281468	65281469	chr12:65281469:T:A	rs12307788	T	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr12	65510788	65510789	chr12:65510789:T:C	rs758990400	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr12	65656210	65656211	chr12:65656211:G:A	rs7975095	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr12	65821511	65821512	chr12:65821512:C:G	rs2612069	C	G	C	Sox1.mouse_HMG_4	10	1	+	4.682485746704076	8.19343399232535	TGAACACTTACTCA
chr12	66345758	66345759	chr12:66345759:A:G	rs1168307	A	G	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	66388843	66388844	chr12:66388844:A:G	rs550026467	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr12	66423497	66423498	chr12:66423498:T:C	rs7398313	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr12	66492106	66492107	chr12:66492107:G:T	rs1364011704	G	T	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr12	66536488	66536489	chr12:66536489:G:C	rs2904513	G	C	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr12	66611542	66611543	chr12:66611543:T:C	rs75129901	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr12	66647281	66647282	chr12:66647282:A:G	rs1231067356	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr12	66659256	66659257	chr12:66659257:A:G	rs17181854	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr12	66941140	66941141	chr12:66941141:C:T	rs17182971	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr12	67276926	67276927	chr12:67276927:A:G	rs79509078	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr12	67366105	67366106	chr12:67366106:C:T	rs183466904	C	T	c	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr12	67394647	67394648	chr12:67394648:G:A	rs1317054404	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	67681058	67681059	chr12:67681059:A:C	rs12309014	A	C	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr12	67721646	67721647	chr12:67721647:T:C	rs7958238	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	68199079	68199080	chr12:68199080:T:G	rs12313843	T	G	T	Sox1.mouse_HMG_4	1	1	+	6.371942657145529	13.280697436460748	TTAATTTAAATTCA
chr12	68332832	68332833	chr12:68332833:A:C	rs114034770	A	C	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	68375361	68375362	chr12:68375362:C:T	rs78107601	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr12	68530477	68530478	chr12:68530478:T:C	rs1442273	T	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr12	68972753	68972754	chr12:68972754:A:G	rs7976991	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr12	69000299	69000300	chr12:69000300:G:A	rs1908676	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr12	69396386	69396387	chr12:69396387:C:T	rs61075977	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr12	69630745	69630746	chr12:69630746:C:T	rs11609277	C	T	c	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr12	69897866	69897867	chr12:69897867:T:G	rs796508683	T	G	t	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr12	69900308	69900309	chr12:69900309:G:A	rs7956173	G	A	A	Sox1.mouse_HMG_4	4	1	-	5.374466288809518	8.096483107636917	TAAACAAACATTCA
chr12	70049032	70049033	chr12:70049033:C:T	rs7959690	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	70106237	70106238	chr12:70106238:G:A	rs181584590	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr12	70393765	70393766	chr12:70393766:A:G	rs787938	A	G	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	70443116	70443117	chr12:70443117:G:A	rs392942	G	A	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	70483477	70483478	chr12:70483478:A:G	rs3913057	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	70510530	70510531	chr12:70510531:G:A	rs1074296	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	70739690	70739691	chr12:70739691:G:A	rs972769	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr12	70816283	70816284	chr12:70816284:C:T	rs11613970	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	70890876	70890877	chr12:70890877:G:A	rs10879214	G	A	A	Sox1.mouse_HMG_4	6	1	-	3.739226624727367	4.261440239967545	TGAAGACCCATTCC
chr12	71504506	71504507	chr12:71504507:G:A	rs7136209	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr12	71565730	71565731	chr12:71565731:A:C	rs1468340462	A	C	A	Sox1.mouse_HMG_4	10	1	-	5.233434990482378	1.868614102979371	TCAACAAATATTCA
chr12	71574404	71574405	chr12:71574405:C:T	rs74101179	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr12	71874341	71874342	chr12:71874342:T:A	rs12581839	T	A	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr12	72284687	72284688	chr12:72284688:C:T	rs4423229	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr12	72284691	72284692	chr12:72284692:A:G	rs4587772	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr12	72502228	72502229	chr12:72502229:C:T	rs192601889	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	74147930	74147931	chr12:74147931:G:A	rs10506703	G	A	G	Sox1.mouse_HMG_4	5	1	-	4.88259241800525	7.802420828134335	TGAATCGTCATTGA
chr12	74204324	74204325	chr12:74204325:C:T	rs12825697	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr12	74204325	74204326	chr12:74204326:T:C	rs12827069	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr12	74801928	74801929	chr12:74801929:T:C	rs6582248	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr12	75651472	75651473	chr12:75651473:C:T	rs67652641	C	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr12	75702849	75702850	chr12:75702850:G:A	rs11180644	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr12	75716970	75716971	chr12:75716971:A:G	rs11180649	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.19515691802823	-2.6806122150960503	AGAACTCTCATTCA
chr12	75721112	75721113	chr12:75721113:T:C	rs35976241	T	C	t	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr12	75794650	75794651	chr12:75794651:C:T	rs11180686	C	T	C	Sox1.mouse_HMG_4	6	1	+	4.178984170491051	4.701197785731229	TGAACTCTCATACA
chr12	75858981	75858982	chr12:75858982:A:G	rs11180720	A	G	G	Sox1.mouse_HMG_4	6	1	-	6.847430625526671	6.325217010286495	TGAATATGCATCCA
chr12	75889501	75889502	chr12:75889502:G:A	rs144048094	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr12	75954242	75954243	chr12:75954243:T:C	rs917325144	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr12	76081114	76081115	chr12:76081115:T:C	rs10785230	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	76319281	76319282	chr12:76319282:T:A	rs142948224	T	A	T	Sox1.mouse_HMG_4	9	1	-	5.137866091608633	-1.7379030415156476	TGAACAGCTATGCC
chr12	76591744	76591745	chr12:76591745:G:C	rs146065815	G	C	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	76636008	76636009	chr12:76636009:T:C	rs1913085	T	C	c	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	76642218	76642219	chr12:76642219:C:T	rs73140815	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr12	77162275	77162276	chr12:77162276:T:C	rs2682805	T	C	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr12	77162310	77162311	chr12:77162311:A:G	rs74105106	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr12	77163300	77163301	chr12:77163301:C:A	rs1391707	C	A	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr12	77222824	77222825	chr12:77222825:C:G	rs1402344	C	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr12	77599936	77599937	chr12:77599937:G:A	rs75130357	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr12	77943553	77943554	chr12:77943554:G:C	rs139979258	G	C	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr12	78144146	78144147	chr12:78144147:T:C	rs419388	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr12	78271861	78271862	chr12:78271862:C:T	rs795941	C	T	C	Sox1.mouse_HMG_4	11	1	-	7.5434523761103405	4.177191564329082	TGAATGAATAGGCA
chr12	78403659	78403660	chr12:78403660:G:A	rs117521380	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.816533016745873	7.338746631986051	TGAAGACTAATTCA
chr12	79384577	79384578	chr12:79384578:G:T	rs2400395	G	T	g	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr12	80101515	80101516	chr12:80101516:T:G	rs73355059	T	G	.	Sox1.mouse_HMG_4	6	1	-	10.356752777877512	9.508573803361267	TGAATTATAATGCA
chr12	80107174	80107175	chr12:80107175:C:A	rs4466901	C	A	.	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr12	80270171	80270172	chr12:80270172:G:A	rs11114378	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr12	80402031	80402032	chr12:80402032:A:T	rs73143130	A	T	A	Sox1.mouse_HMG_4	4	1	-	6.864074401969975	0.017992419471394294	TGAATGTTAAGGCA
chr12	80509458	80509459	chr12:80509459:C:T	rs10862157	C	T	T	Sox1.mouse_HMG_4	0	1	+	6.017540521212652	9.919090268387249	CGAATTCACATTCC
chr12	80864761	80864762	chr12:80864762:A:G	rs76034031	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr12	81187237	81187238	chr12:81187238:T:C	rs77661070	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	82942630	82942631	chr12:82942631:T:C	rs7965229	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr12	83186810	83186811	chr12:83186811:C:A	rs12817230	C	A	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	83310636	83310637	chr12:83310637:G:A	rs6539725	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	83828620	83828621	chr12:83828621:T:G	rs61954584	T	G	t	Sox1.mouse_HMG_4	3	1	-	8.204395082426029	4.413909326684789	TGGATAGCCATTCA
chr12	84198526	84198527	chr12:84198527:A:G	rs34358344	A	G	A	Sox1.mouse_HMG_4	9	1	-	5.753276748974751	5.753276748974751	TGAACAGTCTTTCA
chr12	84421350	84421351	chr12:84421351:A:G	rs12320203	A	G	G	Sox1.mouse_HMG_4	8	1	+	7.546156334768233	2.2428514267091577	TGAACTACAAGTCA
chr12	84603526	84603527	chr12:84603527:T:C	rs7310052	T	C	C	Sox1.mouse_HMG_4	3	1	-	8.178063837064208	1.2906439272600092	TGAATAGACATTGA
chr12	85093185	85093186	chr12:85093186:G:A	rs11532387	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	85198506	85198507	chr12:85198507:C:G	rs74455916	C	G	c	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	85281113	85281114	chr12:85281114:G:A	rs114662219	G	A	G	Sox1.mouse_HMG_4	12	1	-	5.374466288809518	-1.5342884905057026	TTAACAAACATTCA
chr12	85401902	85401903	chr12:85401903:A:G	rs1423416227	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	85523627	85523628	chr12:85523628:A:G	rs12303494	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr12	85641744	85641745	chr12:85641745:G:A	rs11835161	G	A	A	Sox1.mouse_HMG_4	7	1	-	4.434945081418395	4.672857920603578	TGGACTTCCATTCA
chr12	86735951	86735952	chr12:86735952:A:C	rs12315500	A	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr12	86777212	86777213	chr12:86777213:A:G	rs11104082	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr12	86912470	86912471	chr12:86912471:A:G	chr12:86912471:A:G	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	87051693	87051694	chr12:87051694:A:T	rs17014343	A	T	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr12	87113132	87113133	chr12:87113133:G:A	rs2053091	G	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	87720160	87720161	chr12:87720161:A:C	rs11608255	A	C	A	Sox1.mouse_HMG_4	0	1	-	3.4963751335017985	-0.10096323926980966	TGAATGCCCAGCCA
chr12	87954779	87954780	chr12:87954780:T:G	rs12303828	T	G	.	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr12	88299436	88299437	chr12:88299437:T:G	rs186957554	T	G	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr12	88580977	88580978	chr12:88580978:A:T	rs869408	A	T	a	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr12	89350036	89350037	chr12:89350037:T:C	rs111655193	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr12	89350043	89350044	chr12:89350044:T:C	rs78601602	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr12	89350047	89350048	chr12:89350048:T:A	rs76651047	T	A	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	89354410	89354411	chr12:89354411:A:C	chr12:89354411:A:C	A	C	A	Sox1.mouse_HMG_4	0	1	-	6.941910031066145	3.3445716582945355	TGACTAAAAATGCA
chr12	89370586	89370587	chr12:89370587:A:G	rs149619428	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	89397645	89397646	chr12:89397646:A:G	chr12:89397646:A:G	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr12	89465061	89465062	chr12:89465062:G:A	rs11105294	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	89857982	89857983	chr12:89857983:T:C	rs11105439	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.835423300121528	-0.05199660968266939	GGAATATCAATGCA
chr12	90124671	90124672	chr12:90124672:C:T	rs73212053	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	90304466	90304467	chr12:90304467:T:C	rs55688345	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	91073445	91073446	chr12:91073446:G:T	rs7966486	G	T	G	Sox1.mouse_HMG_4	11	1	+	7.058951980018158	10.573106082424468	TGAACAAGAATGCA
chr12	91073446	91073447	chr12:91073447:C:A	rs7966286	C	A	C	Sox1.mouse_HMG_4	12	1	+	7.058951980018158	0.15019720070293707	TGAACAAGAATGCA
chr12	91171749	91171750	chr12:91171750:T:G	rs3138190	T	G	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr12	91256702	91256703	chr12:91256703:G:T	rs11106074	G	T	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr12	91951677	91951678	chr12:91951678:C:G	rs10859245	C	G	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr12	92102833	92102834	chr12:92102834:G:C	rs145012853	G	C	G	Sox1.mouse_HMG_4	5	1	+	4.3182228626562225	1.2002865816555983	TGAATGAACAGCCA
chr12	92123838	92123839	chr12:92123839:T:C	rs709235	T	C	C	Sox1.mouse_HMG_4	2	1	-	4.468369657674482	-2.4403851216407384	TGAAAATACAGTCA
chr12	92134240	92134241	chr12:92134241:T:C	rs77415184	T	C	T	Sox1.mouse_HMG_4	2	1	-	7.269639002631695	0.36088422331647263	TGATTACACATTCA
chr12	92134250	92134251	chr12:92134251:C:T	rs709220	C	T	t	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr12	92244917	92244918	chr12:92244918:C:T	rs10777385	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr12	92395152	92395153	chr12:92395153:C:T	rs791232	C	T	c	Sox1.mouse_HMG_4	12	1	+	3.985818360252651	-2.9229364190625686	TGAATCCTCTTTCA
chr12	92469900	92469901	chr12:92469901:G:A	rs144890056	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr12	92485731	92485732	chr12:92485732:T:C	rs78222869	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr12	92507137	92507138	chr12:92507138:G:A	rs538838054	G	A	g	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	92542863	92542864	chr12:92542864:G:A	rs144670344	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	92654568	92654569	chr12:92654569:T:G	rs6538344	T	G	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr12	92754628	92754629	chr12:92754629:G:C	rs149677164	G	C	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	92973890	92973891	chr12:92973891:T:G	rs75356012	T	G	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	93279553	93279554	chr12:93279554:A:G	rs12423479	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr12	93316557	93316558	chr12:93316558:C:T	rs4761703	C	T	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr12	93571479	93571480	chr12:93571480:C:G	chr12:93571480:C:G	C	G	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	93663600	93663601	chr12:93663601:G:C	rs76285860	G	C	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr12	93991924	93991925	chr12:93991925:T:A	rs147882881	T	A	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr12	93991935	93991936	chr12:93991936:G:A	rs2971589	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr12	94098509	94098510	chr12:94098510:G:A	rs10859667	G	A	a	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	94098523	94098524	chr12:94098524:G:A	rs10859668	G	A	g	Sox1.mouse_HMG_4	8	1	-	5.456047018236807	5.315015719909668	TGAACAGACATTTA
chr12	94218131	94218132	chr12:94218132:G:C	rs5005507	G	C	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr12	94532978	94532979	chr12:94532979:C:T	rs4761624	C	T	C	Sox1.mouse_HMG_4	0	1	-	5.741851203468609	2.474947409589827	GGAATGAGAATGCA
chr12	94533888	94533889	chr12:94533889:G:C	rs7135412	G	C	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	94544597	94544598	chr12:94544598:A:G	rs4761629	A	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr12	94699885	94699886	chr12:94699886:T:C	rs56956092	T	C	t	Sox1.mouse_HMG_4	0	1	+	5.0864931847663	1.1849434375916996	TGACCAGCCATGCA
chr12	94770728	94770729	chr12:94770729:T:C	rs1991930	T	C	C	Sox1.mouse_HMG_4	4	1	+	6.586304291948129	3.8642874731207293	TGACTGCCCAGTCA
chr12	94793485	94793486	chr12:94793486:A:G	rs372979777	A	G	A	Sox1.mouse_HMG_4	9	1	+	6.207051842650323	2.8422309551473166	GGAATTCCTATTCC
chr12	95271626	95271627	chr12:95271627:G:A	rs7135879	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr12	95315538	95315539	chr12:95315539:G:A	rs10777684	G	A	g	Sox1.mouse_HMG_4	8	1	-	5.456047018236807	5.315015719909668	TGAACAGACATTTA
chr12	95582039	95582040	chr12:95582040:A:G	rs780390544	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr12	95694527	95694528	chr12:95694528:C:T	rs7315564	C	T	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr12	95838148	95838149	chr12:95838149:C:T	rs11108298	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr12	95980784	95980785	chr12:95980785:T:C	rs6538694	T	C	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr12	96223245	96223246	chr12:96223246:A:G	rs2300554	A	G	g	Sox1.mouse_HMG_4	0	1	-	3.7362547443875522	-0.1652950027870459	TGAGTCCCCATTCA
chr12	97143588	97143589	chr12:97143589:C:T	rs73230281	C	T	C	Sox1.mouse_HMG_4	7	1	+	9.753017308579595	9.99093014776478	TGACTTCCCATTCA
chr12	97558426	97558427	chr12:97558427:T:C	rs11109107	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr12	97984123	97984124	chr12:97984124:T:A	rs11109314	T	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr12	98292329	98292330	chr12:98292330:T:C	rs12316140	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr12	98397667	98397668	chr12:98397668:C:G	rs143253286	C	G	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr12	98824464	98824465	chr12:98824465:G:T	rs201421	G	T	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr12	98897178	98897179	chr12:98897179:T:C	rs116824709	T	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr12	98897194	98897195	chr12:98897195:A:G	rs11109657	A	G	A	Sox1.mouse_HMG_4	9	1	+	3.77759267169317	0.412771784190163	TGAAGCCCCATTCA
chr12	99218370	99218371	chr12:99218371:G:T	rs2246683	G	T	T	Sox1.mouse_HMG_4	7	1	+	5.559524016931424	6.775195089440256	TGATTACGAATTCA
chr12	99260350	99260351	chr12:99260351:A:G	rs73140991	A	G	A	Sox1.mouse_HMG_4	8	1	+	9.393662933717565	4.09035802565849	TGAATTCAAAGTCA
chr12	99980168	99980169	chr12:99980169:A:G	rs56356758	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr12	100954079	100954080	chr12:100954080:C:A	rs11831528	C	A	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	101623951	101623952	chr12:101623952:A:T	rs825066	A	T	A	Sox1.mouse_HMG_4	8	1	-	7.988148573914412	7.370491874503109	TGAACTAATATGCA
chr12	101664555	101664556	chr12:101664556:C:G	rs11110945	C	G	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr12	101699695	101699696	chr12:101699696:T:C	rs11110968	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr12	101744929	101744930	chr12:101744930:G:C	rs1980144	G	C	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr12	101772374	101772375	chr12:101772375:C:A	rs7979857	C	A	C	Sox1.mouse_HMG_4	1	1	-	4.972666431869731	-1.9360883474454902	AGAATAGTCATGCA
chr12	101862271	101862272	chr12:101862272:C:T	rs11111065	C	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr12	101941569	101941570	chr12:101941570:G:T	rs60652275	G	T	G	Sox1.mouse_HMG_4	12	1	-	7.955451809309777	1.046697029994556	TCAATAAATATTCA
chr12	101996095	101996096	chr12:101996096:A:C	rs180988730	A	C	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	102061496	102061497	chr12:102061497:T:C	rs116126814	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr12	103209769	103209770	chr12:103209770:A:T	rs181914202	A	T	A	Sox1.mouse_HMG_4	4	1	-	7.366730780988361	0.5206487984897794	TGACTGGCCATGCA
chr12	103561099	103561100	chr12:103561100:C:T	rs80334388	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr12	103579832	103579833	chr12:103579833:G:C	rs17034112	G	C	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr12	103666962	103666963	chr12:103666963:A:G	rs3752877	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr12	103931870	103931871	chr12:103931871:T:G	rs2722188	T	G	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr12	103991550	103991551	chr12:103991551:T:A	rs2254063	T	A	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr12	104223999	104224000	chr12:104224000:G:A	rs10861171	G	A	G	Sox1.mouse_HMG_4	12	1	-	7.352548330413043	0.4437935510978226	CGAATGGTTATGCA
chr12	104295680	104295681	chr12:104295681:T:C	rs7294778	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	104367479	104367480	chr12:104367480:C:A	rs73181933	C	A	C	Sox1.mouse_HMG_4	7	1	+	4.527955030343763	4.501623784981941	TGAAGAGCTATTCC
chr12	104412453	104412454	chr12:104412454:T:C	rs6539151	T	C	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr12	104448226	104448227	chr12:104448227:G:A	rs2374356	G	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr12	104591801	104591802	chr12:104591802:G:A	rs11112120	G	A	G	Sox1.mouse_HMG_4	4	1	-	8.163813034179535	10.885829853006934	TGAACTACTAGTCA
chr12	104711479	104711480	chr12:104711480:A:T	rs73191451	A	T	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr12	104958162	104958163	chr12:104958163:G:A	rs75254888	G	A	g	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr12	105065018	105065019	chr12:105065019:T:C	rs10861342	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr12	105085783	105085784	chr12:105085784:G:A	rs6539191	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.4976790750293825	8.21969589385678	TGAACAATTATTTA
chr12	105106852	105106853	chr12:105106853:G:A	rs1196841	G	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr12	105257577	105257578	chr12:105257578:C:T	rs4964344	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr12	105318802	105318803	chr12:105318803:A:C	rs67454169	A	C	A	Sox1.mouse_HMG_4	5	1	-	5.879508831311256	6.077616702182793	TGAATTCAAGTGCA
chr12	105318824	105318825	chr12:105318825:T:C	rs10746022	T	C	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	105415790	105415791	chr12:105415791:C:T	rs78201331	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr12	105476922	105476923	chr12:105476923:C:T	rs9634225	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr12	105561722	105561723	chr12:105561723:A:G	rs2694397	A	G	G	Sox1.mouse_HMG_4	11	1	-	4.160281111198282	-2.720133802989287	GGAGTGGACATTCA
chr12	105702094	105702095	chr12:105702095:A:G	rs11112680	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr12	105792644	105792645	chr12:105792645:A:G	rs1477242	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr12	105820833	105820834	chr12:105820834:C:T	rs76736341	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	105967463	105967464	chr12:105967464:T:C	rs35819527	T	C	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr12	106030965	106030966	chr12:106030966:A:C	rs744346	A	C	A	Sox1.mouse_HMG_4	13	1	+	5.456047018236807	1.857965467665041	TGAACAGACATTTA
chr12	106106565	106106566	chr12:106106566:C:T	rs78442120	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr12	106522935	106522936	chr12:106522936:T:C	rs7963357	T	C	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	106673946	106673947	chr12:106673947:C:A	rs186123599	C	A	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	106919529	106919530	chr12:106919530:C:A	rs114813975	C	A	C	Sox1.mouse_HMG_4	1	1	-	5.878068907033003	-1.030685872282217	TGAATTCAAATCCA
chr12	107282942	107282943	chr12:107282943:A:G	rs724041	A	G	G	Sox1.mouse_HMG_4	11	1	-	7.069742493733145	0.18932757954557466	TGAATTGTAATTCT
chr12	107436969	107436970	chr12:107436970:C:A	rs56722149	C	A	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	107759474	107759475	chr12:107759475:C:G	rs75169334	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr12	108180500	108180501	chr12:108180501:T:G	rs1895910	T	G	T	Sox1.mouse_HMG_4	9	1	-	5.374466288809518	-1.5013028443147631	TCAACAAACATTCA
chr12	108262406	108262407	chr12:108262407:T:C	rs7300909	T	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr12	108393005	108393006	chr12:108393006:G:A	rs803564	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr12	108457578	108457579	chr12:108457579:T:C	rs6539428	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr12	108489843	108489844	chr12:108489844:T:C	rs2160974	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	108632456	108632457	chr12:108632457:C:G	rs149712683	C	G	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	108712641	108712642	chr12:108712642:C:T	rs11114037	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr12	108727918	108727919	chr12:108727919:G:A	rs11114039	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	108908157	108908158	chr12:108908158:A:G	rs117872254	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr12	108935341	108935342	chr12:108935342:C:T	rs11114106	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr12	109157770	109157771	chr12:109157771:C:G	rs12818998	C	G	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr12	109541441	109541442	chr12:109541442:T:C	rs73198406	T	C	T	Sox1.mouse_HMG_4	3	1	-	8.250789117523407	1.3633692077192088	GGAACTGTTATTCA
chr12	109541461	109541462	chr12:109541462:T:C	rs12831657	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr12	109639132	109639133	chr12:109639133:C:T	rs7960944	C	T	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr12	109702583	109702584	chr12:109702584:T:C	rs1420746	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	110218407	110218408	chr12:110218408:A:G	rs117833221	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr12	110728014	110728015	chr12:110728015:G:A	rs74893960	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr12	111467838	111467839	chr12:111467839:T:G	chr12:111467839:T:G	T	G	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	111468204	111468205	chr12:111468205:T:A	rs151096690	T	A	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	111813557	111813558	chr12:111813558:C:T	rs73205612	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	112001694	112001695	chr12:112001695:C:G	rs184058330	C	G	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr12	112450887	112450888	chr12:112450888:C:A	rs17822304	C	A	C	Sox1.mouse_HMG_4	3	1	+	4.7959790808560525	8.586464836597292	CGACCAGTTATTCA
chr12	112977948	112977949	chr12:112977949:C:T	rs12815666	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	112977990	112977991	chr12:112977991:G:A	rs73205248	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	112991523	112991524	chr12:112991524:G:A	rs7975318	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr12	113007039	113007040	chr12:113007040:G:A	rs1293747	G	A	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr12	113236156	113236157	chr12:113236157:G:A	rs77255906	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr12	113246162	113246163	chr12:113246163:A:G	rs148591081	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.8459397141658345	0.9443899669912346	TGAACTGACAGGCA
chr12	113257715	113257716	chr12:113257716:T:C	rs61943600	T	C	T	Sox1.mouse_HMG_4	3	1	-	12.221499793395672	5.3340798835914764	TGAACATTCATTCA
chr12	113616938	113616939	chr12:113616939:C:T	rs12825782	C	T	c	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr12	113683404	113683405	chr12:113683405:G:A	rs11616159	G	A	g	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr12	114073426	114073427	chr12:114073427:A:G	rs12582231	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr12	114284434	114284435	chr12:114284435:A:G	rs11067028	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr12	114294525	114294526	chr12:114294526:A:G	rs10774745	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	114294538	114294539	chr12:114294539:A:C	rs10774746	A	C	C	Sox1.mouse_HMG_4	4	1	-	11.6072976759111	4.761215693412521	TGAATAGCTAGTCA
chr12	114294539	114294540	chr12:114294540:T:A	rs10774747	T	A	A	Sox1.mouse_HMG_4	3	1	-	11.6072976759111	4.7198777661069045	TGAATAGCTAGTCA
chr12	114334147	114334148	chr12:114334148:G:A	rs10850317	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr12	114478494	114478495	chr12:114478495:G:A	rs3914951	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr12	114918877	114918878	chr12:114918878:T:C	rs80243479	T	C	t	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr12	114936941	114936942	chr12:114936942:T:C	rs117786301	T	C	T	Sox1.mouse_HMG_4	6	1	-	9.290414920271983	9.371995649699272	TGAATTAGAAGTCA
chr12	115170536	115170537	chr12:115170537:G:A	rs11067452	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr12	115421832	115421833	chr12:115421833:A:G	rs12817997	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr12	115719747	115719748	chr12:115719748:A:C	rs17774152	A	C	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	115796897	115796898	chr12:115796898:A:T	rs912360677	A	T	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr12	116135690	116135691	chr12:116135691:A:G	rs59509739	A	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr12	116165144	116165145	chr12:116165145:A:G	rs112608219	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.860672537424762	1.495851649921755	AGAACTGACATTCA
chr12	116375107	116375108	chr12:116375108:A:G	rs2247001	A	G	G	Sox1.mouse_HMG_4	10	1	-	4.17606719529232	-2.6997019378319607	TGAATACTCGTACA
chr12	116392115	116392116	chr12:116392116:G:A	rs2254578	G	A	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr12	116408753	116408754	chr12:116408754:C:A	rs73204035	C	A	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr12	116910718	116910719	chr12:116910719:G:A	rs115599170	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	117151450	117151451	chr12:117151451:C:T	rs2221165	C	T	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr12	117527620	117527621	chr12:117527621:G:A	rs12579847	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	118815238	118815239	chr12:118815239:G:A	rs7974231	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr12	119205215	119205216	chr12:119205216:C:T	chr12:119205216:C:T	C	T	C	Sox1.mouse_HMG_4	4	1	+	7.45666535799043	10.178682176817828	TGAACTCCCAGTCA
chr12	119259616	119259617	chr12:119259617:G:A	rs2555262	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr12	119259638	119259639	chr12:119259639:C:T	rs76307937	C	T	C	Sox1.mouse_HMG_4	12	1	+	6.813192906055955	-0.09556187325926602	GGAATTTCTATGCA
chr12	119259639	119259640	chr12:119259640:A:T	rs80264264	A	T	A	Sox1.mouse_HMG_4	13	1	+	6.813192906055955	-0.06955220992201472	GGAATTTCTATGCA
chr12	119288754	119288755	chr12:119288755:A:G	rs12424105	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr12	119625019	119625020	chr12:119625020:A:G	rs10744742	A	G	G	Sox1.mouse_HMG_4	0	1	-	9.65790701826457	5.75635727108997	TGAATTCTAAGTCA
chr12	120121470	120121471	chr12:120121471:G:A	rs79190122	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr12	120509615	120509616	chr12:120509616:A:G	rs11065145	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr12	120582204	120582205	chr12:120582205:C:G	rs77143301	C	G	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr12	121091407	121091408	chr12:121091408:G:A	rs56098349	G	A	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr12	121091423	121091424	chr12:121091424:A:G	rs71454676	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr12	121099879	121099880	chr12:121099880:G:A	rs2263271	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr12	121099905	121099906	chr12:121099906:C:A	rs1182936	C	A	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	121179582	121179583	chr12:121179583:T:C	rs35734276	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr12	121246116	121246117	chr12:121246117:C:T	rs35898441	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr12	121247384	121247385	chr12:121247385:T:A	rs2686342	T	A	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr12	121423825	121423826	chr12:121423826:T:G	rs183521191	T	G	T	Sox1.mouse_HMG_4	11	1	+	4.790531398840277	1.276377296433967	TGAACACTCATTGA
chr12	121538637	121538638	chr12:121538638:G:A	rs76665063	G	A	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr12	121707074	121707075	chr12:121707075:C:T	rs112154130	C	T	-	Sox1.mouse_HMG_4	9	1	-	4.427574761723585	7.7923956492265924	TGAATGGCCGGGCA
chr12	121808229	121808230	chr12:121808230:T:C	rs145928437	T	C	T	Sox1.mouse_HMG_4	0	1	+	5.118485715289003	1.2169359681144025	TGAACTGTTGGTCA
chr12	122205958	122205959	chr12:122205959:T:C	rs149961727	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr12	122612928	122612929	chr12:122612929:C:T	rs768309588	C	T	C	Sox1.mouse_HMG_4	6	1	+	3.2685034292964854	3.7907170445366623	GGAATGCCCCTTCA
chr12	122723257	122723258	chr12:122723258:A:C	rs10847574	A	C	-	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr12	123722661	123722662	chr12:123722662:C:T	rs9788204	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	123722664	123722665	chr12:123722665:T:C	rs9787987	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr12	124073247	124073248	chr12:124073248:C:G	rs1387669	C	G	c	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr12	124170875	124170876	chr12:124170876:T:C	rs4324002	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.280481267466071	3.37893152029147	TGAACGCCTATTCC
chr12	124170904	124170905	chr12:124170905:A:G	rs4635173	A	G	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr12	124639406	124639407	chr12:124639407:T:C	rs11614335	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr12	124639412	124639413	chr12:124639413:A:G	rs4765166	A	G	A	Sox1.mouse_HMG_4	11	1	-	4.470409106327184	-2.4100058078603857	GGAATATTCACTCA
chr12	124730713	124730714	chr12:124730714:T:C	rs838857	T	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr12	124911074	124911075	chr12:124911075:T:C	rs143404497	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	124911075	124911076	chr12:124911076:C:T	rs60821733	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr12	125129812	125129813	chr12:125129813:C:T	rs73423563	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr12	125501813	125501814	chr12:125501814:G:A	rs4430574	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	126108470	126108471	chr12:126108471:C:T	rs12580681	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr12	126139617	126139618	chr12:126139618:T:C	rs7960175	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr12	126312197	126312198	chr12:126312198:G:T	rs10847123	G	T	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr12	126465755	126465756	chr12:126465756:G:A	rs10847164	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr12	126548158	126548159	chr12:126548159:G:A	rs182100327	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr12	126548185	126548186	chr12:126548186:C:T	rs10847178	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr12	126667520	126667521	chr12:126667521:G:A	rs75534601	G	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr12	126784595	126784596	chr12:126784596:T:C	rs927291032	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr12	126881201	126881202	chr12:126881202:A:T	rs80298628	A	T	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr12	126907362	126907363	chr12:126907363:G:T	rs918133	G	T	g	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr12	127108678	127108679	chr12:127108679:T:G	rs143918440	T	G	G	Sox1.mouse_HMG_4	6	1	-	5.266420636673317	4.4182416621570715	TGAACAAATTTTCA
chr12	127224885	127224886	chr12:127224886:G:T	rs12309248	G	T	T	Sox1.mouse_HMG_4	10	1	+	11.17342034184592	14.538241229348927	TGAATATATAGTCA
chr12	127716453	127716454	chr12:127716454:G:A	rs113953798	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr12	127802482	127802483	chr12:127802483:G:A	rs68021801	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr12	128076422	128076423	chr12:128076423:C:T	rs77643730	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr12	128079841	128079842	chr12:128079842:A:T	rs57307741	A	T	A	Sox1.mouse_HMG_4	3	1	+	7.281000897725306	0.3935809879211083	TGAACTCACATGCA
chr12	128123733	128123734	chr12:128123734:G:A	rs76624987	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr12	128190879	128190880	chr12:128190880:C:A	rs115764069	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr12	128582246	128582247	chr12:128582247:A:G	rs1489418	A	G	A	Sox1.mouse_HMG_4	7	1	+	4.502366962782098	3.5509399748202695	GGAAAAGATATTCA
chr12	128592452	128592453	chr12:128592453:A:G	rs75181278	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	128947212	128947213	chr12:128947213:G:A	rs470671	G	A	g	Sox1.mouse_HMG_4	5	1	+	4.3868338822170045	4.828613104822344	TGAACGCTTGGTCA
chr12	128959928	128959929	chr12:128959929:A:T	rs112565884	A	T	a	Sox1.mouse_HMG_4	3	1	+	10.75638031343104	3.8689604036268435	TGAATAGCAATTCC
chr12	129119929	129119930	chr12:129119930:A:G	rs11060145	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr12	129132930	129132931	chr12:129132931:C:T	rs10744400	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr12	129133305	129133306	chr12:129133306:A:G	rs7972082	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr12	129607683	129607684	chr12:129607684:T:C	rs61943549	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr12	129614383	129614384	chr12:129614384:G:A	rs542392759	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr12	129614401	129614402	chr12:129614402:T:C	rs78159213	T	C	T	Sox1.mouse_HMG_4	7	1	+	7.553546898848473	7.315634059663291	TGAACTCTTAGTCA
chr12	129749362	129749363	chr12:129749363:G:A	rs11060533	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr12	129807198	129807199	chr12:129807199:A:T	rs11060566	A	T	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr12	129849021	129849022	chr12:129849022:C:A	rs74446564	C	A	C	Sox1.mouse_HMG_4	8	1	+	11.346178239451465	10.587490241713022	GGAATATTCATTCA
chr12	129851406	129851407	chr12:129851407:T:C	rs10744435	T	C	T	Sox1.mouse_HMG_4	3	1	-	5.5306647212203215	-1.3567551885838756	TGAACAATTTTTCA
chr12	129996966	129996967	chr12:129996967:T:A	rs78954540	T	A	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr12	129996974	129996975	chr12:129996975:G:A	rs1675867	G	A	A	Sox1.mouse_HMG_4	6	1	+	4.000155262368482	3.918574532941193	GGAATTGCCTTTCA
chr12	129999117	129999118	chr12:129999118:T:C	rs2398495	T	C	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr12	130054312	130054313	chr12:130054313:A:G	rs10847983	A	G	A	Sox1.mouse_HMG_4	3	1	+	4.277988217230921	-2.609431692573276	GGAACCCACATTCA
chr12	130185233	130185234	chr12:130185234:G:A	rs73441119	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr12	130280820	130280821	chr12:130280821:C:T	rs10773762	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr12	130301500	130301501	chr12:130301501:A:G	rs77449897	A	G	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr12	130728485	130728486	chr12:130728486:C:T	rs1206015	C	T	-	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr12	130836097	130836098	chr12:130836098:C:T	rs35019831	C	T	C	Sox1.mouse_HMG_4	6	1	+	7.269639002631695	7.7918526178718714	TGAGTACACATTCA
chr12	131068380	131068381	chr12:131068381:T:C	rs11061310	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr12	131220617	131220618	chr12:131220618:A:G	rs11061390	A	G	a	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr12	131483212	131483213	chr12:131483213:G:A	rs12579726	G	A	G	Sox1.mouse_HMG_4	5	1	+	4.314896689445787	4.756675912051126	TGAACGGCAAATCA
chr12	131543372	131543373	chr12:131543373:C:T	rs66918939	C	T	-	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr12	131574966	131574967	chr12:131574967:A:G	rs10751698	A	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr12	131621438	131621439	chr12:131621439:G:A	rs6598217	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr12	131790754	131790755	chr12:131790755:G:A	rs6598156	G	A	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr12	132078326	132078327	chr12:132078327:G:A	rs551287424	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr12	132107976	132107977	chr12:132107977:T:C	rs12426424	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr12	132287462	132287463	chr12:132287463:T:C	rs28577928	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr12	132636150	132636151	chr12:132636151:C:T	rs4883624	C	T	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr12	132666208	132666209	chr12:132666209:G:A	rs4883579	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr12	132986949	132986950	chr12:132986950:G:A	rs889274847	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr13	19581794	19581795	chr13:19581795:C:G	rs2487357	C	G	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr13	20121539	20121540	chr13:20121540:T:C	rs191251463	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr13	20133216	20133217	chr13:20133217:C:G	rs4769950	C	G	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr13	20190562	20190563	chr13:20190563:G:C	chr13:20190563:G:C	G	C	G	Sox1.mouse_HMG_4	4	1	-	7.478403849292221	3.3543386856210384	TGAACTGCAATGCA
chr13	20266163	20266164	chr13:20266164:C:T	chr13:20266164:C:T	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr13	20361656	20361657	chr13:20361657:G:A	rs141699024	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr13	20387580	20387581	chr13:20387581:G:A	rs75918354	G	A	G	Sox1.mouse_HMG_4	8	1	-	7.803214512965484	7.662183214638343	TGAACTTACATGCA
chr13	20388376	20388377	chr13:20388377:G:A	rs1928370	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr13	20669311	20669312	chr13:20669312:C:T	rs17055401	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr13	20787373	20787374	chr13:20787374:T:C	rs4146442	T	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr13	21014596	21014597	chr13:21014597:C:T	rs113584185	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr13	21341071	21341072	chr13:21341072:T:A	chr13:21341072:T:A	T	A	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr13	21436643	21436644	chr13:21436644:A:C	rs9506678	A	C	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr13	21604624	21604625	chr13:21604625:A:G	rs55788810	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr13	21838748	21838749	chr13:21838749:C:G	rs57961600	C	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr13	22285947	22285948	chr13:22285948:A:C	rs9550833	A	C	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr13	22328109	22328110	chr13:22328110:T:G	rs158870	T	G	G	Sox1.mouse_HMG_4	6	1	-	5.197316660508483	4.349137685992239	TGAACAACCATGCC
chr13	22499475	22499476	chr13:22499476:G:A	rs9510198	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.663909734657896	-2.2448450446573247	TCAATAGACATGCA
chr13	22506286	22506287	chr13:22506287:A:G	rs549880284	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr13	22730150	22730151	chr13:22730151:G:A	rs74037681	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr13	23009598	23009599	chr13:23009599:T:C	rs142914730	T	C	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	23839297	23839298	chr13:23839298:C:T	rs9578648	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr13	23848963	23848964	chr13:23848964:G:T	rs139645487	G	T	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr13	23866410	23866411	chr13:23866411:G:C	rs9510913	G	C	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr13	23958140	23958141	chr13:23958141:T:C	rs142907982	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr13	24031660	24031661	chr13:24031661:G:A	rs10507336	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr13	24136127	24136128	chr13:24136128:A:T	rs7337499	A	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr13	24459061	24459062	chr13:24459062:T:A	rs1130941	T	A	.	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr13	24459088	24459089	chr13:24459089:A:G	rs1050107	A	G	.	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr13	24708963	24708964	chr13:24708964:G:A	rs9507398	G	A	-	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr13	25113092	25113093	chr13:25113093:T:C	rs2994891	T	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr13	25585503	25585504	chr13:25585504:T:C	rs7321555	T	C	T	Sox1.mouse_HMG_4	12	1	+	6.779488745848888	13.688243525164108	TGAATTGAAATTTA
chr13	25988622	25988623	chr13:25988623:T:C	rs4770892	T	C	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr13	26048681	26048682	chr13:26048682:G:A	rs9553714	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr13	26200894	26200895	chr13:26200895:A:C	rs7338440	A	C	a	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr13	26206511	26206512	chr13:26206512:T:C	rs301062	T	C	-	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr13	26280803	26280804	chr13:26280804:G:A	rs9512178	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr13	26556378	26556379	chr13:26556379:A:G	rs4769504	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr13	26824650	26824651	chr13:26824651:G:A	rs7335408	G	A	G	Sox1.mouse_HMG_4	5	1	+	11.164334577208248	11.606113799813585	TGAACGGAAATTCA
chr13	27480440	27480441	chr13:27480441:A:C	rs9581865	A	C	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr13	27826346	27826347	chr13:27826347:C:A	rs9551403	C	A	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr13	28003416	28003417	chr13:28003417:A:G	rs35613052	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr13	28023701	28023702	chr13:28023702:G:A	rs9512982	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr13	28137563	28137564	chr13:28137564:A:G	rs373941405	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.800823615359911	4.078806796532511	TGATTTGAAATTCA
chr13	28161517	28161518	chr13:28161518:T:C	rs575356245	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.188039970001726	3.286490222827126	TGACTCTATATTCA
chr13	28476468	28476469	chr13:28476469:A:G	rs17628733	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr13	28523327	28523328	chr13:28523328:T:C	rs76252727	T	C	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr13	28529938	28529939	chr13:28529939:T:A	rs117629014	T	A	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr13	29004921	29004922	chr13:29004922:A:G	rs3858734	A	G	A	Sox1.mouse_HMG_4	8	1	-	9.888317663587385	10.029348961914524	TGAATTCCTATGCA
chr13	29212895	29212896	chr13:29212896:G:A	rs11619729	G	A	-	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr13	29230874	29230875	chr13:29230875:G:T	rs7981178	G	T	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr13	29566843	29566844	chr13:29566844:A:G	rs6490411	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr13	30179435	30179436	chr13:30179436:C:T	rs67903552	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr13	30225132	30225133	chr13:30225133:T:C	rs605095	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.171188710078042	-2.7162311997261557	TGAATGGACTTTCC
chr13	30226155	30226156	chr13:30226156:A:C	rs169332	A	C	A	Sox1.mouse_HMG_4	2	1	+	6.8726611241908	-0.036093655124420865	TGAATTCTCATTTA
chr13	30327074	30327075	chr13:30327075:A:G	rs9285072	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr13	30720748	30720749	chr13:30720749:T:C	rs76204123	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr13	30734514	30734515	chr13:30734515:A:T	rs9315042	A	T	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr13	30893228	30893229	chr13:30893229:T:C	rs145184098	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr13	31195813	31195814	chr13:31195814:G:A	rs77658764	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr13	31195819	31195820	chr13:31195820:T:C	rs559351877	T	C	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	31965937	31965938	chr13:31965938:A:C	rs660772	A	C	A	Sox1.mouse_HMG_4	1	1	+	5.720291102783812	5.720291102783812	TAAACAGTCATTCA
chr13	31965939	31965940	chr13:31965940:A:G	rs7322910	A	G	A	Sox1.mouse_HMG_4	3	1	+	5.720291102783812	-1.167128807020385	TAAACAGTCATTCA
chr13	32080056	32080057	chr13:32080057:G:T	rs204568	G	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr13	32213138	32213139	chr13:32213139:T:C	rs798986	T	C	C	Sox1.mouse_HMG_4	0	1	+	6.467385741316655	2.5658359941420557	TGAATTCATATTAA
chr13	32285442	32285443	chr13:32285443:T:G	rs564641237	T	G	T	Sox1.mouse_HMG_4	11	1	+	3.9092455494629332	0.3950914470566229	AGAACTGGCATTCA
chr13	33046287	33046288	chr13:33046288:A:T	rs625774	A	T	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr13	33123277	33123278	chr13:33123278:G:C	rs75153868	G	C	G	Sox1.mouse_HMG_4	6	1	-	9.508573803361267	10.438333507304803	TGAATTCTAATGCA
chr13	33578864	33578865	chr13:33578865:A:C	rs9597678	A	C	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr13	33723457	33723458	chr13:33723458:A:C	rs9598028	A	C	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr13	33723491	33723492	chr13:33723492:T:G	rs1925092	T	G	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr13	33806782	33806783	chr13:33806783:A:G	rs932757	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr13	34951811	34951812	chr13:34951812:A:C	rs4941807	A	C	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr13	35713476	35713477	chr13:35713477:T:C	rs1035122258	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.829834639913609	0.9470895239356398	TGAATATCCTTTCA
chr13	35812202	35812203	chr13:35812203:T:C	rs4542532	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr13	36067613	36067614	chr13:36067614:C:A	rs35040964	C	A	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr13	36068025	36068026	chr13:36068026:C:G	rs76734765	C	G	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr13	36124137	36124138	chr13:36124138:C:T	rs7332939	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr13	36875467	36875468	chr13:36875468:T:C	rs9531990	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr13	37194876	37194877	chr13:37194877:C:T	rs9532012	C	T	.	Sox1.mouse_HMG_4	5	1	-	7.66016858277855	8.101947805383888	GGAACGCTCATTCA
chr13	37241948	37241949	chr13:37241949:A:G	rs1980733	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr13	37337018	37337019	chr13:37337019:C:T	rs12871603	C	T	c	Sox1.mouse_HMG_4	12	1	+	10.821486245493436	3.912731466178216	TGAACTCCCATTCA
chr13	37443759	37443760	chr13:37443760:A:T	rs4144255	A	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr13	38477740	38477741	chr13:38477741:T:A	rs9548366	T	A	T	Sox1.mouse_HMG_4	8	1	+	5.263214779888282	4.645558080476979	TGAACAAATGTGCA
chr13	38915527	38915528	chr13:38915528:A:C	rs79506629	A	C	A	Sox1.mouse_HMG_4	11	1	-	10.273568507512215	6.759414405105904	GGAATTATAATTCA
chr13	39095598	39095599	chr13:39095599:A:C	rs9548594	A	C	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr13	39254223	39254224	chr13:39254224:C:A	rs115613308	C	A	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr13	39285116	39285117	chr13:39285117:C:T	rs76460761	C	T	C	Sox1.mouse_HMG_4	5	1	-	4.140619126455658	4.582398349060997	TGAACGCCCAGGCA
chr13	39285131	39285132	chr13:39285132:G:A	rs80333517	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr13	39285140	39285141	chr13:39285141:C:T	rs77164770	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr13	39449216	39449217	chr13:39449217:C:T	rs77307194	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr13	39609606	39609607	chr13:39609607:C:T	rs4943680	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr13	39655404	39655405	chr13:39655405:T:C	rs149418199	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr13	39655430	39655431	chr13:39655431:A:T	rs9548867	A	T	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr13	40232217	40232218	chr13:40232218:G:A	rs13378244	G	A	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr13	40507272	40507273	chr13:40507273:C:T	rs9549229	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	40777832	40777833	chr13:40777833:G:C	rs566364910	G	C	.	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr13	40806226	40806227	chr13:40806227:C:T	rs3783164	C	T	.	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr13	41419444	41419445	chr13:41419445:T:C	rs77807298	T	C	.	Sox1.mouse_HMG_4	2	1	+	8.034761832907853	8.034761832907853	TGTATATTCATTCA
chr13	41564072	41564073	chr13:41564073:A:C	rs1887743	A	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr13	41802337	41802338	chr13:41802338:G:T	rs4942079	G	T	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr13	42326309	42326310	chr13:42326310:T:G	rs935802913	T	G	T	Sox1.mouse_HMG_4	13	1	-	7.00000503605832	3.401923485486554	GGAATCCACATTCA
chr13	42991857	42991858	chr13:42991858:C:A	rs1271346816	C	A	C	Sox1.mouse_HMG_4	12	1	+	4.6941927901146006	-2.21456198920062	TGAGCTTTCATTCA
chr13	43096509	43096510	chr13:43096510:G:A	rs74063468	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr13	43347425	43347426	chr13:43347426:G:A	rs6561119	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr13	43364404	43364405	chr13:43364405:T:C	rs4942221	T	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr13	43396141	43396142	chr13:43396142:T:C	rs4942224	T	C	t	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr13	43474984	43474985	chr13:43474985:A:C	rs1853404	A	C	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr13	43924876	43924877	chr13:43924877:T:C	rs2028812	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr13	43958017	43958018	chr13:43958018:C:T	rs7334745	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr13	44159740	44159741	chr13:44159741:C:T	rs4448833	C	T	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr13	44259339	44259340	chr13:44259340:C:T	rs9590817	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr13	44922508	44922509	chr13:44922509:G:C	rs988224396	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr13	45320106	45320107	chr13:45320107:G:A	rs115514770	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr13	45468862	45468863	chr13:45468863:C:T	rs35391963	C	T	.	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr13	45590216	45590217	chr13:45590217:T:C	rs1325688	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr13	45941469	45941470	chr13:45941470:T:C	rs2075427	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr13	45989517	45989518	chr13:45989518:T:C	rs718530	T	C	t	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr13	46125343	46125344	chr13:46125344:C:G	rs9534334	C	G	A	Sox1.mouse_HMG_4	10	1	-	5.070378830399194	1.559430584777919	TGAACGGCCAGGCA
chr13	46125356	46125357	chr13:46125357:C:T	rs148868871	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr13	46338220	46338221	chr13:46338221:T:C	rs2765619	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr13	46552125	46552126	chr13:46552126:A:G	rs142125262	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr13	46552157	46552158	chr13:46552158:T:C	rs116644245	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr13	46552170	46552171	chr13:46552171:T:C	rs114039912	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr13	46700591	46700592	chr13:46700592:T:C	rs842397	T	C	C	Sox1.mouse_HMG_4	5	1	+	7.315634059663291	4.395805649534204	TGAACTCCTAGTCA
chr13	47188793	47188794	chr13:47188794:G:A	rs7338907	G	A	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr13	47358599	47358600	chr13:47358600:T:C	rs9526320	T	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr13	48040302	48040303	chr13:48040303:G:T	rs9567985	G	T	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr13	48040338	48040339	chr13:48040339:C:T	rs61973264	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr13	48044033	48044034	chr13:48044034:C:T	rs9567986	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr13	48152082	48152083	chr13:48152083:G:A	rs1752136	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr13	48694286	48694287	chr13:48694287:G:A	rs139925532	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr13	49643302	49643303	chr13:49643303:C:T	rs118072935	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr13	49686030	49686031	chr13:49686031:G:A	rs1535544	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	50357804	50357805	chr13:50357805:T:A	rs35045939	T	A	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr13	50357806	50357807	chr13:50357807:G:A	rs35383320	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr13	50800682	50800683	chr13:50800683:A:G	rs59962876	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.312745014080454	-1.563024119043827	TGGACATTCATTCA
chr13	50801834	50801835	chr13:50801835:A:G	rs9591364	A	G	A	Sox1.mouse_HMG_4	4	1	-	8.44230792161121	5.720291102783812	TGAATAGTCATTAA
chr13	50801847	50801848	chr13:50801848:T:C	rs73186332	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr13	50893753	50893754	chr13:50893754:A:C	rs139699252	A	C	A	Sox1.mouse_HMG_4	6	1	-	6.194793028844494	6.602339117547853	TGAATTTCAATGCC
chr13	50912030	50912031	chr13:50912031:G:T	rs77867626	G	T	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr13	50912057	50912058	chr13:50912058:C:G	rs76357952	C	G	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr13	50912066	50912067	chr13:50912067:A:G	rs75122835	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr13	51069541	51069542	chr13:51069542:C:G	rs7325888	C	G	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr13	51071537	51071538	chr13:51071538:A:C	rs4605050	A	C	C	Sox1.mouse_HMG_4	5	1	+	7.337795109898473	3.7780796062925113	TGAATAAAAATTGA
chr13	51126098	51126099	chr13:51126099:G:A	rs924484872	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr13	51450799	51450800	chr13:51450800:T:A	rs2277445	T	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr13	51821173	51821174	chr13:51821174:T:G	rs7335860	T	G	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	52338244	52338245	chr13:52338245:G:A	rs9596643	G	A	G	Sox1.mouse_HMG_4	6	1	-	7.0707689950623385	7.592982610302514	TGAATGCTCATTGA
chr13	52749482	52749483	chr13:52749483:C:T	rs9536275	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr13	52962039	52962040	chr13:52962040:T:C	rs11617841	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr13	53171214	53171215	chr13:53171215:T:C	rs1322962	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr13	53193497	53193498	chr13:53193498:G:C	rs1322954	G	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr13	53277033	53277034	chr13:53277034:A:G	rs7335176	A	G	a	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr13	53753800	53753801	chr13:53753801:A:G	rs4537884	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr13	54424462	54424463	chr13:54424463:G:A	rs9527208	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr13	56000391	56000392	chr13:56000392:A:C	rs8000414	A	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr13	56461556	56461557	chr13:56461557:G:A	rs3905100	G	A	A	Sox1.mouse_HMG_4	13	1	-	7.575338791274156	4.290675225867952	TGAATATATAGTCC
chr13	56507237	56507238	chr13:56507238:C:T	rs7333297	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr13	56507242	56507243	chr13:56507243:T:C	rs7334724	T	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr13	56507276	56507277	chr13:56507277:C:T	rs115902258	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr13	57246733	57246734	chr13:57246734:C:T	rs959745	C	T	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr13	57315441	57315442	chr13:57315442:C:A	rs74659743	C	A	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr13	57628073	57628074	chr13:57628074:G:T	rs118032710	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr13	58744101	58744102	chr13:58744102:G:A	rs1413116	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr13	58998963	58998964	chr13:58998964:T:C	rs77062668	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr13	59599327	59599328	chr13:59599328:A:C	rs80092351	A	C	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr13	60163364	60163365	chr13:60163365:C:T	rs180886484	C	T	C	Sox1.mouse_HMG_4	7	1	+	4.734445517985551	4.972358357170735	TGAACTGCTTTTCA
chr13	60275549	60275550	chr13:60275550:C:A	rs67451150	C	A	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr13	61133240	61133241	chr13:61133241:C:T	rs11148543	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	61261626	61261627	chr13:61261627:T:G	rs9805473	T	G	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr13	61503292	61503293	chr13:61503293:T:A	rs12427905	T	A	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr13	61830701	61830702	chr13:61830702:T:C	rs76968855	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr13	61961151	61961152	chr13:61961152:T:C	rs9598397	T	C	C	Sox1.mouse_HMG_4	4	1	+	6.730893662612536	4.008876843785138	TGAATTAAATTTCA
chr13	62627251	62627252	chr13:62627252:G:C	rs2809600	G	C	C	Sox1.mouse_HMG_4	10	1	+	9.915876548957742	6.404928303336469	TGAATTTAAAGTCA
chr13	62644417	62644418	chr13:62644418:T:A	rs538181048	T	A	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr13	63088258	63088259	chr13:63088259:A:G	rs3106417	A	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr13	63704998	63704999	chr13:63704999:G:C	rs7998991	G	C	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr13	64000150	64000151	chr13:64000151:T:C	rs970704	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr13	64753705	64753706	chr13:64753706:G:A	rs9564191	G	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr13	65507622	65507623	chr13:65507623:T:C	rs7338146	T	C	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr13	66365455	66365456	chr13:66365456:T:C	rs7319883	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr13	66657357	66657358	chr13:66657358:C:A	chr13:66657358:C:A	C	A	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr13	66657372	66657373	chr13:66657373:G:A	rs9529114	G	A	G	Sox1.mouse_HMG_4	10	1	+	7.3115332083670435	3.800584962745769	TGAACACAAAGTCA
chr13	66657385	66657386	chr13:66657386:A:G	rs1408283240	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr13	66996692	66996693	chr13:66996693:G:A	rs74096720	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.171713715753314	7.893730534580713	TGTACATTTATTCA
chr13	67515932	67515933	chr13:67515933:A:G	rs9541139	A	G	G	Sox1.mouse_HMG_4	0	1	-	7.156640318221221	3.2550905710466242	TGAATTTACATTCT
chr13	67577806	67577807	chr13:67577807:A:G	rs12862917	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr13	67742760	67742761	chr13:67742761:A:T	rs1414527	A	T	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr13	68645082	68645083	chr13:68645083:T:C	rs78815836	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr13	68728134	68728135	chr13:68728135:T:C	rs9529415	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr13	68970628	68970629	chr13:68970629:G:A	rs17084426	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr13	69296832	69296833	chr13:69296833:T:G	rs1322683	T	G	T	Sox1.mouse_HMG_4	10	1	+	7.736284614458868	4.37146372695586	TGAATGGACATTTA
chr13	69857668	69857669	chr13:69857669:T:C	rs17085536	T	C	C	Sox1.mouse_HMG_4	7	1	-	5.418978901474348	4.46755191351252	AGAACAAACATTCA
chr13	70348394	70348395	chr13:70348395:T:C	rs17086821	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr13	71252218	71252219	chr13:71252219:C:T	rs2325405	C	T	T	Sox1.mouse_HMG_4	0	1	+	6.554514386297855	10.456064133472454	CGACTAAAAATTCA
chr13	71768472	71768473	chr13:71768473:A:G	rs9572786	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr13	72151927	72151928	chr13:72151928:C:T	rs2032734	C	T	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr13	72225259	72225260	chr13:72225260:C:T	rs12100447	C	T	c	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr13	72256068	72256069	chr13:72256069:G:A	rs9572927	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr13	72535807	72535808	chr13:72535808:G:A	rs7320819	G	A	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr13	72580554	72580555	chr13:72580555:T:C	rs66695278	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr13	73025555	73025556	chr13:73025556:T:C	rs9543203	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr13	73160659	73160660	chr13:73160660:C:T	rs61967427	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.527439872186692	7.386408573859552	AGAATTACCATTCA
chr13	73223281	73223282	chr13:73223282:G:A	rs1410100	G	A	G	Sox1.mouse_HMG_4	6	1	-	7.955521153140167	8.477734768380344	TGAACACCTGTTCA
chr13	73223293	73223294	chr13:73223294:C:T	rs75391501	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr13	73451656	73451657	chr13:73451657:T:G	rs187107384	T	G	T	Sox1.mouse_HMG_4	9	1	-	10.57486503773402	3.6990959046097407	TGACTTAACATTCA
chr13	73809750	73809751	chr13:73809751:A:G	rs2875667	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr13	73809779	73809780	chr13:73809780:A:G	rs111748270	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr13	74155189	74155190	chr13:74155190:T:C	rs9318248	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr13	74281353	74281354	chr13:74281354:C:T	rs75626642	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr13	74784226	74784227	chr13:74784227:G:A	rs943601	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr13	75120013	75120014	chr13:75120014:C:T	rs9565134	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr13	75425550	75425551	chr13:75425551:G:A	rs12876647	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr13	75452648	75452649	chr13:75452649:T:C	rs150889385	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr13	75697109	75697110	chr13:75697110:C:T	rs9544029	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr13	75907208	75907209	chr13:75907209:C:G	rs9318383	C	G	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr13	76165706	76165707	chr13:76165707:G:A	rs12860868	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr13	76474861	76474862	chr13:76474862:A:G	rs146278791	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.827859780026356	4.105842961198957	TGAGTGCACATTCA
chr13	76515975	76515976	chr13:76515976:G:A	rs2065725	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.365518132068068	-2.5432366472471504	CGAAGAGCCATTCA
chr13	76770237	76770238	chr13:76770238:G:C	rs115193159	G	C	G	Sox1.mouse_HMG_4	4	1	-	4.994588751236309	0.8705235875651274	TGAACAGTAAATCA
chr13	76949700	76949701	chr13:76949701:A:G	rs9530613	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.951933615769523	4.587112728266516	TGAATGATCAATCA
chr13	77386966	77386967	chr13:77386967:A:G	rs9318479	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr13	77399365	77399366	chr13:77399366:A:G	rs9530646	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr13	77516439	77516440	chr13:77516440:A:G	rs10871105	A	G	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr13	77779705	77779706	chr13:77779706:C:T	rs150737520	C	T	c	Sox1.mouse_HMG_4	0	1	-	6.440312505719082	3.1734087118403	GGAATTCCTAGTCA
chr13	77779723	77779724	chr13:77779724:G:C	rs536919722	G	C	g	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr13	77834262	77834263	chr13:77834263:A:T	rs79724345	A	T	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr13	77866440	77866441	chr13:77866441:G:A	rs4885488	G	A	g	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr13	77907732	77907733	chr13:77907733:C:T	rs3027111	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr13	78057953	78057954	chr13:78057954:G:A	rs1819435	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr13	78187878	78187879	chr13:78187879:G:A	rs9544747	G	A	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr13	78735733	78735734	chr13:78735734:A:T	rs9574284	A	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr13	78860839	78860840	chr13:78860840:C:T	rs2184181	C	T	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr13	79386699	79386700	chr13:79386700:G:C	rs3742120	G	C	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr13	79485419	79485420	chr13:79485420:T:C	rs61368443	T	C	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr13	79910910	79910911	chr13:79910911:T:A	rs140578224	T	A	T	Sox1.mouse_HMG_4	4	1	+	4.222130512052558	-2.6239514704460243	TGCATGGACATGCA
chr13	80047509	80047510	chr13:80047510:C:T	rs11838936	C	T	T	Sox1.mouse_HMG_4	4	1	+	7.633132418112105	10.355149236939502	GGAACTGTAATTCA
chr13	80047511	80047512	chr13:80047512:G:T	rs11838950	G	T	G	Sox1.mouse_HMG_4	6	1	+	7.633132418112105	7.225586329408746	GGAACTGTAATTCA
chr13	80103422	80103423	chr13:80103423:T:A	rs1327313	T	A	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr13	80584731	80584732	chr13:80584732:T:C	rs9545496	T	C	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr13	80658880	80658881	chr13:80658881:G:C	rs113265742	G	C	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr13	80658902	80658903	chr13:80658903:C:G	rs1417833	C	G	G	Sox1.mouse_HMG_4	8	1	+	4.987194560033895	-1.0747983457636219	GGAACGGCCGTTCA
chr13	80658909	80658910	chr13:80658910:G:T	rs1176326	G	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr13	81017387	81017388	chr13:81017388:C:A	rs4473061	C	A	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr13	81017398	81017399	chr13:81017399:T:A	rs150720927	T	A	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr13	82297866	82297867	chr13:82297867:G:A	rs9531323	G	A	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr13	82849082	82849083	chr13:82849083:T:G	rs9546241	T	G	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr13	83002856	83002857	chr13:83002857:G:A	rs2633053	G	A	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr13	83065185	83065186	chr13:83065186:G:A	rs61960185	G	A	A	Sox1.mouse_HMG_4	4	1	-	4.876472024807573	7.598488843634971	TGAACAGAAGGTCA
chr13	83230194	83230195	chr13:83230195:C:T	rs80263311	C	T	C	Sox1.mouse_HMG_4	1	1	-	9.371995649699272	2.4632408703840527	TGAATTGGAAGTCA
chr13	83377023	83377024	chr13:83377024:C:T	rs9546362	C	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr13	83927585	83927586	chr13:83927586:G:A	rs7338518	G	A	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr13	83979934	83979935	chr13:83979935:C:T	rs9575497	C	T	T	Sox1.mouse_HMG_4	12	1	+	14.864206588624995	7.955451809309776	TGAATAAATATTCA
chr13	84332688	84332689	chr13:84332689:G:A	rs6563381	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr13	85236318	85236319	chr13:85236319:C:T	rs9566053	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr13	85236324	85236325	chr13:85236325:T:C	rs9566054	T	C	C	Sox1.mouse_HMG_4	4	1	+	7.264249120605324	4.542232301777926	GGAATCCTCATTCA
chr13	85401139	85401140	chr13:85401140:T:C	rs9602744	T	C	t	Sox1.mouse_HMG_4	5	1	+	5.822655806307779	2.902827396178692	GGAATTCCAAGTCA
chr13	85738853	85738854	chr13:85738854:C:T	rs7336831	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr13	85896158	85896159	chr13:85896159:C:A	rs9547426	C	A	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr13	85942887	85942888	chr13:85942888:A:G	rs28571288	A	G	A	Sox1.mouse_HMG_4	10	1	-	10.978525725742966	4.102756592618684	TGAATCTATATTCA
chr13	85942915	85942916	chr13:85942916:A:G	rs1330048	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr13	86383685	86383686	chr13:86383686:A:G	rs9517457	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr13	86956422	86956423	chr13:86956423:A:G	rs2685785	A	G	A	Sox1.mouse_HMG_4	2	1	+	8.096349430289827	1.1875946509746071	TGAATAGCTAATCA
chr13	87556943	87556944	chr13:87556944:C:G	rs7996035	C	G	C	Sox1.mouse_HMG_4	1	1	-	7.348344743466546	0.439589964151325	TGAATCACAGTTCA
chr13	87867769	87867770	chr13:87867770:A:G	rs9554871	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr13	88564991	88564992	chr13:88564992:G:C	rs9559556	G	C	G	Sox1.mouse_HMG_4	12	1	-	14.22431949514812	7.3155647158329	TGAATTAATATTCA
chr13	88938251	88938252	chr13:88938252:T:C	rs73590296	T	C	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr13	88979775	88979776	chr13:88979776:T:C	rs117690311	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr13	89311100	89311101	chr13:89311101:G:T	rs146901232	G	T	G	Sox1.mouse_HMG_4	7	1	-	10.840307761596495	10.813976516234675	TGAATAGCAATGCA
chr13	90416540	90416541	chr13:90416541:T:C	rs117684387	T	C	T	Sox1.mouse_HMG_4	9	1	-	9.187476693810785	5.822655806307779	GGAATTCCAATTCA
chr13	92036019	92036020	chr13:92036020:C:A	rs72635404	C	A	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr13	92137160	92137161	chr13:92137161:T:G	rs2182500	T	G	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr13	93108483	93108484	chr13:93108484:C:T	rs113485054	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr13	93230148	93230149	chr13:93230149:G:C	rs142812921	G	C	G	Sox1.mouse_HMG_4	12	1	-	4.749699929197437	-2.1590548501177835	TGAACAGCAATTCT
chr13	93343151	93343152	chr13:93343152:A:G	rs9561321	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr13	93476265	93476266	chr13:93476266:A:G	rs17234537	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr13	93547976	93547977	chr13:93547977:G:T	rs9524126	G	T	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr13	93982735	93982736	chr13:93982736:A:G	rs9301921	A	G	A	Sox1.mouse_HMG_4	10	1	+	4.9723583571707355	8.483306602792009	TGAACTGTTAATCA
chr13	94056128	94056129	chr13:94056129:G:A	rs9301928	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr13	94198909	94198910	chr13:94198910:G:A	rs11840269	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr13	94382782	94382783	chr13:94382783:T:A	rs4280106	T	A	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr13	94965895	94965896	chr13:94965896:C:A	rs9524716	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	95167811	95167812	chr13:95167812:T:C	rs114768847	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr13	95231416	95231417	chr13:95231417:C:T	rs9561811	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr13	95406578	95406579	chr13:95406579:A:G	rs1538335	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr13	95554285	95554286	chr13:95554286:T:A	rs114121880	T	A	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr13	97012612	97012613	chr13:97012613:C:G	rs145420628	C	G	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr13	97261553	97261554	chr13:97261554:T:C	rs149205461	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.371352961609674	1.0065320741066666	TGAATGGTTATGCT
chr13	97758574	97758575	chr13:97758575:C:G	rs2783485	C	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr13	97766950	97766951	chr13:97766951:T:C	rs1772377	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr13	98097832	98097833	chr13:98097833:T:C	rs9513352	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr13	98172785	98172786	chr13:98172786:G:A	rs185885	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.963580665974034	-1.9451741133411862	TGAACATCTGTGCA
chr13	98175091	98175092	chr13:98175092:C:G	rs187653993	C	G	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr13	98275213	98275214	chr13:98275214:C:T	rs17565003	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr13	98371464	98371465	chr13:98371465:C:G	rs9517276	C	G	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr13	98549620	98549621	chr13:98549621:G:A	rs9513442	G	A	G	Sox1.mouse_HMG_4	4	1	-	4.451215549315585	7.173232368142984	GGAACAGGCAGTCA
chr13	98691447	98691448	chr13:98691448:A:C	rs559513384	A	C	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr13	98772453	98772454	chr13:98772454:T:A	rs7331136	T	A	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr13	98997123	98997124	chr13:98997124:A:G	rs541228161	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr13	99651101	99651102	chr13:99651102:C:G	rs61974380	C	G	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr13	99940540	99940541	chr13:99940541:G:A	rs12583077	G	A	G	Sox1.mouse_HMG_4	5	1	+	4.175737587965382	4.61751681057072	CGACCGACCATTCA
chr13	100668812	100668813	chr13:100668813:T:C	rs2791680	T	C	C	Sox1.mouse_HMG_4	0	1	+	7.955451809309777	4.053902062135178	TGTATAAATATTCA
chr13	100933009	100933010	chr13:100933010:C:A	rs9582435	C	A	A	Sox1.mouse_HMG_4	1	1	-	7.815628044072347	0.9068732647571249	TGACCAGAAATTCA
chr13	100970146	100970147	chr13:100970147:C:T	rs2094133	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr13	101613273	101613274	chr13:101613274:A:G	rs72659145	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr13	101815905	101815906	chr13:101815906:A:T	rs7999888	A	T	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr13	101920179	101920180	chr13:101920180:G:A	rs141274897	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr13	101974843	101974844	chr13:101974844:T:C	rs4772432	T	C	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr13	101982535	101982536	chr13:101982536:G:A	rs2476210	G	A	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr13	102044010	102044011	chr13:102044011:A:G	rs589992	A	G	a	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr13	102045945	102045946	chr13:102045946:A:G	rs7332448	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	102130926	102130927	chr13:102130927:C:T	rs16959792	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr13	102193624	102193625	chr13:102193625:C:G	rs589987	C	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr13	102614432	102614433	chr13:102614433:C:T	rs1998957	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr13	102614450	102614451	chr13:102614451:A:G	rs1998956	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr13	102901784	102901785	chr13:102901785:A:G	rs35379416	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr13	102901820	102901821	chr13:102901821:C:T	rs8181825	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr13	103018508	103018509	chr13:103018509:G:T	rs2033070	G	T	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr13	103081637	103081638	chr13:103081638:C:T	rs9518918	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr13	103276029	103276030	chr13:103276030:A:G	rs2951176	A	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr13	103664068	103664069	chr13:103664069:G:T	rs16962959	G	T	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr13	103885017	103885018	chr13:103885018:G:T	rs1360969	G	T	T	Sox1.mouse_HMG_4	8	1	-	6.36571205392511	5.607024056186667	CGAATTCTCATGCA
chr13	104222001	104222002	chr13:104222002:G:A	rs9586438	G	A	A	Sox1.mouse_HMG_4	8	1	-	4.762919060460292	4.621887762133153	TGAACTAACATACA
chr13	104309593	104309594	chr13:104309594:A:G	rs6491840	A	G	G	Sox1.mouse_HMG_4	0	1	-	4.711575849530741	0.8100261023561413	TGAGTAGCCATGCA
chr13	104551939	104551940	chr13:104551940:A:G	rs71432819	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.849729041905353	-1.0260400912189287	TTAATTCAAATTCA
chr13	104875684	104875685	chr13:104875685:A:C	rs138131415	A	C	A	Sox1.mouse_HMG_4	0	1	-	6.61973540181644	3.022397029044834	TGAATTGGCACTCA
chr13	104892255	104892256	chr13:104892256:A:G	rs17471783	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr13	105232734	105232735	chr13:105232735:C:G	rs9555155	C	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr13	105432740	105432741	chr13:105432741:C:A	rs143935404	C	A	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr13	105565380	105565381	chr13:105565381:C:T	rs7327536	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr13	105634309	105634310	chr13:105634310:T:G	rs79000211	T	G	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr13	105798057	105798058	chr13:105798058:G:A	rs9583043	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr13	105824622	105824623	chr13:105824623:C:A	rs12428213	C	A	C	Sox1.mouse_HMG_4	12	1	+	4.907642345656242	-2.001112433658978	GGAAAAGTCATTCA
chr13	105830575	105830576	chr13:105830576:C:G	rs7321500	C	G	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr13	105907052	105907053	chr13:105907053:T:C	rs71432868	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr13	105960846	105960847	chr13:105960847:G:A	rs61972607	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr13	105967449	105967450	chr13:105967450:T:C	rs79832300	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr13	106651521	106651522	chr13:106651522:G:C	rs9520135	G	C	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr13	107141691	107141692	chr13:107141692:A:G	rs72664762	A	G	A	Sox1.mouse_HMG_4	11	1	-	7.310976929937312	0.4305620157497423	TGAAAACACATTCA
chr13	107169801	107169802	chr13:107169802:C:T	rs2182957	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr13	107203175	107203176	chr13:107203176:T:C	rs9301197	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr13	107369995	107369996	chr13:107369996:C:A	rs11619597	C	A	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr13	107370991	107370992	chr13:107370992:T:C	rs7330338	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr13	107529280	107529281	chr13:107529281:C:T	rs1830754	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr13	108199243	108199244	chr13:108199244:G:A	chr13:108199244:G:A	G	A	G	Sox1.mouse_HMG_4	0	1	+	7.313638849499632	4.04673505562085	GGAACTACAATTCA
chr13	108201011	108201012	chr13:108201012:C:G	rs72660867	C	G	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr13	108227792	108227793	chr13:108227793:A:G	rs12855465	A	G	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr13	108595845	108595846	chr13:108595846:G:A	rs77325888	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr13	108777760	108777761	chr13:108777761:T:A	rs144828559	T	A	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr13	108895035	108895036	chr13:108895036:A:G	rs73614646	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr13	108919351	108919352	chr13:108919352:T:G	rs79796122	T	G	T	Sox1.mouse_HMG_4	8	1	-	6.779488745848887	7.53817674358733	TAAATTGAAATTCA
chr13	109037119	109037120	chr13:109037120:T:C	rs7997784	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr13	109181231	109181232	chr13:109181232:A:G	rs1445756549	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.789086689162358	-2.0936584268156113	GGAACTGCCAGTCA
chr13	109198837	109198838	chr13:109198838:C:A	rs114135283	C	A	T	Sox1.mouse_HMG_4	0	1	+	6.5721218413728115	3.609429421897021	CGAATGCTTGTTCA
chr13	109271590	109271591	chr13:109271591:T:C	rs869914	T	C	T	Sox1.mouse_HMG_4	10	1	+	9.884216812291138	3.008447679166858	TGAATACAAATGCA
chr13	109473986	109473987	chr13:109473987:C:T	rs7324699	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr13	109707936	109707937	chr13:109707937:T:C	rs9521484	T	C	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr13	109740668	109740669	chr13:109740669:C:T	rs1550039	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr13	109918701	109918702	chr13:109918702:G:C	rs76948695	G	C	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr13	109918712	109918713	chr13:109918713:A:G	rs9559674	A	G	G	Sox1.mouse_HMG_4	7	1	+	6.843965510855821	5.8925385228939895	GGAATTTACATTCC
chr13	109979588	109979589	chr13:109979589:A:G	rs9559688	A	G	A	Sox1.mouse_HMG_4	4	1	-	3.8669253320482717	1.144908513220872	TGAATGTCCATGCT
chr13	110188276	110188277	chr13:110188277:G:T	rs1977892	G	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr13	110400311	110400312	chr13:110400312:A:G	rs1927346	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr13	110461289	110461290	chr13:110461290:T:G	rs9515222	T	G	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr13	110485907	110485908	chr13:110485908:G:A	rs2296851	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr13	110628904	110628905	chr13:110628905:C:T	rs7995119	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr13	110767617	110767618	chr13:110767618:A:G	rs9888475	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.6198791423673224	-2.2628659736106465	TGTACTACTATTCA
chr13	110911880	110911881	chr13:110911881:C:T	rs9515311	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr13	110944179	110944180	chr13:110944180:T:A	rs2001187	T	A	.	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr13	111033664	111033665	chr13:111033665:C:T	rs188920184	C	T	C	Sox1.mouse_HMG_4	6	1	-	7.621917304066906	7.540336574639616	TGACTCGCTATTCA
chr13	111219375	111219376	chr13:111219376:G:A	rs141912875	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr13	111303559	111303560	chr13:111303560:T:C	rs6492352	T	C	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr13	111337122	111337123	chr13:111337123:G:A	rs512610	G	A	A	Sox1.mouse_HMG_4	0	1	-	6.272539675583198	10.174089422757797	CGAATTGAAATGCA
chr13	111478211	111478212	chr13:111478212:G:T	rs74500427	G	T	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr13	111625197	111625198	chr13:111625198:G:A	rs80278230	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr13	111884318	111884319	chr13:111884319:A:C	rs9577646	A	C	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr13	111930064	111930065	chr13:111930065:T:A	rs9577826	T	A	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr13	112262638	112262639	chr13:112262639:A:G	rs9549925	A	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr13	112351487	112351488	chr13:112351488:G:T	rs2149207	G	T	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr13	112654085	112654086	chr13:112654086:A:G	rs61961079	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr13	112679369	112679370	chr13:112679370:C:T	rs7338610	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr13	112834935	112834936	chr13:112834936:A:T	rs282612	A	T	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr13	112864957	112864958	chr13:112864958:A:G	rs139374739	A	G	-	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr13	113053387	113053388	chr13:113053388:C:T	rs9604014	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.232496267142	4.0914649688148605	GGAATATCCTTTCA
chr13	113533798	113533799	chr13:113533799:T:C	rs2260728	T	C	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr13	113771408	113771409	chr13:113771409:C:T	rs7997306	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr13	113854172	113854173	chr13:113854173:C:G	rs60844214	C	G	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr13	114015597	114015598	chr13:114015598:A:G	rs539813078	A	G	A	Sox1.mouse_HMG_4	0	1	-	7.9437261810333855	4.042176433858787	TGAACGTCCATTCC
chr13	114226817	114226818	chr13:114226818:T:G	rs201519868	T	G	T	Sox1.mouse_HMG_4	9	1	-	5.060161939404479	-1.8156071937198022	TGACCAGACATGCA
chr14	19164165	19164166	chr14:19164166:G:C	rs113900603	G	C	.	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr14	19821123	19821124	chr14:19821124:A:G	rs6572021	A	G	G	Sox1.mouse_HMG_4	2	1	+	6.221253295239594	-0.6875014840756279	TGAATCAGAATGCA
chr14	19918868	19918869	chr14:19918869:G:T	rs67930303	G	T	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr14	20315331	20315332	chr14:20315332:G:A	rs7142776	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr14	20597816	20597817	chr14:20597817:C:T	rs17211537	C	T	C	Sox1.mouse_HMG_4	1	1	-	5.483291639707566	-1.425463139607654	CGAATGCCAATTCC
chr14	21083262	21083263	chr14:21083263:C:T	rs56182310	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr14	21233678	21233679	chr14:21233679:G:C	rs148319445	G	C	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr14	21308360	21308361	chr14:21308361:A:C	rs4981369	A	C	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr14	21555741	21555742	chr14:21555742:T:C	rs111920571	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr14	21768356	21768357	chr14:21768357:C:A	rs766737	C	A	.	Sox1.mouse_HMG_4	4	1	+	4.681577408704616	0.5575122450334338	TGAACCGAAGTTCA
chr14	21829448	21829449	chr14:21829449:G:A	rs1008685	G	A	a	Sox1.mouse_HMG_4	8	1	-	7.477930883671063	7.336899585343923	TGAGTTAACATTCA
chr14	21829450	21829451	chr14:21829451:T:A	rs1008686	T	A	t	Sox1.mouse_HMG_4	6	1	-	7.477930883671063	7.151965524394995	TGAGTTAACATTCA
chr14	21883828	21883829	chr14:21883829:A:G	rs7140909	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr14	21949761	21949762	chr14:21949762:A:C	rs760006	A	C	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr14	22065622	22065623	chr14:22065623:C:T	rs3811312	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr14	22080064	22080065	chr14:22080065:G:A	rs2204982	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr14	22166304	22166305	chr14:22166305:G:A	rs12587826	G	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr14	22221619	22221620	chr14:22221620:C:T	rs7147698	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr14	22291821	22291822	chr14:22291822:G:C	rs72690828	G	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr14	22599021	22599022	chr14:22599022:T:C	rs8011143	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr14	22836704	22836705	chr14:22836705:A:G	chr14:22836705:A:G	A	G	A	Sox1.mouse_HMG_4	6	1	-	6.009172079099756	5.48695846385958	TGAACTTGAATTCC
chr14	22838955	22838956	chr14:22838956:G:A	rs17880697	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr14	22927470	22927471	chr14:22927471:T:C	rs12589539	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr14	22956740	22956741	chr14:22956741:C:G	rs527571017	C	G	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr14	22956783	22956784	chr14:22956784:G:A	rs60662150	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr14	23010614	23010615	chr14:23010615:G:A	rs374300087	G	A	g	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr14	23320982	23320983	chr14:23320983:G:A	rs142084369	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr14	23416677	23416678	chr14:23416678:G:A	rs3729829	G	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr14	23485580	23485581	chr14:23485581:T:C	rs8010694	T	C	T	Sox1.mouse_HMG_4	0	1	+	9.94542151374907	6.043871766574473	TGAATTCCCATTCC
chr14	23692552	23692553	chr14:23692553:G:C	rs72688349	G	C	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr14	23786036	23786037	chr14:23786037:T:C	rs1958309	T	C	C	Sox1.mouse_HMG_4	5	1	-	6.461799721984498	6.020020499379159	TGAATACCAAGTCC
chr14	24092353	24092354	chr14:24092354:C:T	rs28674477	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr14	24441931	24441932	chr14:24441932:G:T	rs11628866	G	T	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr14	24441962	24441963	chr14:24441963:C:T	rs11158705	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr14	24690477	24690478	chr14:24690478:A:G	rs17106984	A	G	A	Sox1.mouse_HMG_4	4	1	+	4.031445953932191	4.031445953932191	TGAAATACCATGCA
chr14	24725363	24725364	chr14:24725364:T:C	rs206226	T	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr14	24903584	24903585	chr14:24903585:T:C	rs187572561	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr14	24960685	24960686	chr14:24960686:T:C	rs17109371	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr14	24985102	24985103	chr14:24985103:T:C	rs17185509	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr14	24985106	24985107	chr14:24985107:T:G	rs112869097	T	G	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr14	24985113	24985114	chr14:24985114:T:C	rs148260254	T	C	T	Sox1.mouse_HMG_4	9	1	-	5.34335558503732	1.9785346975343117	TGAACAGATATCCA
chr14	25007224	25007225	chr14:25007225:A:G	rs1957762	A	G	A	Sox1.mouse_HMG_4	11	1	-	10.730049068069219	3.8496341538816505	TGAATAGAAATTCC
chr14	25019942	25019943	chr14:25019943:C:T	rs1062230	C	T	T	Sox1.mouse_HMG_4	0	1	+	3.684293111285575	7.5858428584601745	CGATTTGCCATTCA
chr14	25094402	25094403	chr14:25094403:C:A	rs17185698	C	A	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr14	25110250	25110251	chr14:25110251:C:T	rs17201092	C	T	c	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	25535641	25535642	chr14:25535642:A:G	rs8012783	A	G	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr14	25551154	25551155	chr14:25551155:T:C	chr14:25551155:T:C	T	C	T	Sox1.mouse_HMG_4	2	1	+	8.096483107636917	8.096483107636917	TGTATAAACATTCA
chr14	25576633	25576634	chr14:25576634:C:T	rs1951072	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.519268810976681	7.37823751264954	TGAAATAACATTCA
chr14	25628826	25628827	chr14:25628827:G:A	rs11159415	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr14	26045933	26045934	chr14:26045934:C:G	rs4983140	C	G	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr14	26526330	26526331	chr14:26526331:T:C	rs17111336	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr14	27507408	27507409	chr14:27507409:C:G	rs12887064	C	G	C	Sox1.mouse_HMG_4	7	1	+	6.350832554046997	5.373074320723347	TGAATCCCAATGCA
chr14	27996773	27996774	chr14:27996774:C:G	rs17113398	C	G	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr14	28429323	28429324	chr14:28429324:G:A	rs72662598	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	28772539	28772540	chr14:28772540:A:G	rs146481963	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr14	30337624	30337625	chr14:30337625:A:G	rs179082	A	G	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr14	30822267	30822268	chr14:30822268:A:G	rs4981079	A	G	G	Sox1.mouse_HMG_4	10	1	-	7.566996204436639	0.6912270713123572	GGAACGGAAATTCA
chr14	30861451	30861452	chr14:30861452:T:C	rs179655	T	C	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr14	30882578	30882579	chr14:30882579:C:T	rs10431648	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr14	31024715	31024716	chr14:31024716:A:T	rs179737	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr14	31413001	31413002	chr14:31413002:A:T	rs10872852	A	T	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr14	31413112	31413113	chr14:31413113:T:C	rs2378862	T	C	t	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr14	31419579	31419580	chr14:31419580:A:C	rs58506726	A	C	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr14	31419684	31419685	chr14:31419685:A:G	rs143587323	A	G	A	Sox1.mouse_HMG_4	7	1	+	7.291624879658305	6.340197891696477	TGACTTGACAGTCA
chr14	31510225	31510226	chr14:31510226:A:G	rs28369136	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr14	31886594	31886595	chr14:31886595:T:C	rs10483392	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr14	31921251	31921252	chr14:31921252:T:C	rs12878913	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr14	32407508	32407509	chr14:32407509:T:C	rs8004021	T	C	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr14	32470021	32470022	chr14:32470022:T:C	rs9285570	T	C	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr14	32565645	32565646	chr14:32565646:C:T	rs12147476	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr14	32908911	32908912	chr14:32908912:C:T	rs117631361	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr14	33618863	33618864	chr14:33618864:G:A	rs2383519	G	A	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr14	33656105	33656106	chr14:33656106:C:T	rs7155493	C	T	T	Sox1.mouse_HMG_4	12	1	+	6.658314746556267	-0.2504400327589529	CGAATTTCTGTTCA
chr14	33656107	33656108	chr14:33656108:G:A	rs7155809	G	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr14	33670787	33670788	chr14:33670788:C:T	rs2183275	C	T	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr14	33694070	33694071	chr14:33694071:G:C	rs4981203	G	C	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr14	33738683	33738684	chr14:33738684:G:A	rs114541675	G	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr14	33777394	33777395	chr14:33777395:G:A	rs8015337	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr14	34112042	34112043	chr14:34112043:T:C	rs12895404	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.233422320490377	-2.649322795487592	GGAATTGTCATACA
chr14	34461624	34461625	chr14:34461625:A:C	rs564750074	A	C	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr14	35371455	35371456	chr14:35371456:G:A	rs2057339	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr14	35371471	35371472	chr14:35371472:T:G	rs4272943	T	G	T	Sox1.mouse_HMG_4	4	1	+	4.371463726955861	-2.47461825554272	TGGATGGACAGTCA
chr14	35416952	35416953	chr14:35416953:T:A	rs7140629	T	A	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr14	35767038	35767039	chr14:35767039:C:T	rs141890886	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr14	35808000	35808001	chr14:35808001:T:G	rs72642588	T	G	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr14	36091617	36091618	chr14:36091618:G:A	rs1953119	G	A	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr14	36574335	36574336	chr14:36574336:G:C	rs11620993	G	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr14	36988828	36988829	chr14:36988829:T:C	rs28487989	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr14	37039717	37039718	chr14:37039718:T:C	rs10137595	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr14	37139894	37139895	chr14:37139895:C:T	rs141748234	C	T	C	Sox1.mouse_HMG_4	8	1	+	6.296877145158843	6.155845846831704	TGAATACGCATTAA
chr14	37252949	37252950	chr14:37252950:C:T	rs2145179	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr14	37562259	37562260	chr14:37562260:A:G	rs77134159	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr14	38046834	38046835	chr14:38046835:C:A	rs10498334	C	A	C	Sox1.mouse_HMG_4	7	1	+	5.430577323577242	5.404246078215421	TGAACAACCAGGCA
chr14	38863244	38863245	chr14:38863245:T:C	rs76600317	T	C	T	Sox1.mouse_HMG_4	9	1	-	10.586051785026106	7.221230897523099	GGAATACCCATTCA
chr14	38866947	38866948	chr14:38866948:A:G	rs8008452	A	G	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr14	39784863	39784864	chr14:39784864:C:G	rs10130736	C	G	C	Sox1.mouse_HMG_4	1	1	-	3.7409295382137824	-3.1678252411014394	TGAATCCCCATTCT
chr14	40383274	40383275	chr14:40383275:T:G	rs75971661	T	G	T	Sox1.mouse_HMG_4	13	1	-	4.203222579441907	0.605141028870142	TGAAAGAACATGCA
chr14	40425623	40425624	chr14:40425624:C:T	rs76837235	C	T	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr14	41026415	41026416	chr14:41026416:A:C	rs11626131	A	C	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr14	41742812	41742813	chr14:41742813:G:A	rs58922111	G	A	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr14	42091610	42091611	chr14:42091611:C:T	rs61988718	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr14	42660899	42660900	chr14:42660900:T:C	rs2415757	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr14	43031820	43031821	chr14:43031821:C:A	rs34531947	C	A	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr14	43382441	43382442	chr14:43382442:A:G	rs10150748	A	G	G	Sox1.mouse_HMG_4	11	1	-	5.897395156778196	-0.9830197574093729	TGATTTCCAATTCA
chr14	43412491	43412492	chr14:43412492:A:G	rs62000204	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	44308904	44308905	chr14:44308905:C:A	rs72684713	C	A	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr14	44803414	44803415	chr14:44803415:C:T	rs555251404	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr14	45918420	45918421	chr14:45918421:C:A	rs2899970	C	A	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr14	46325462	46325463	chr14:46325463:A:G	rs11851560	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.844226371039445	2.1222095522120465	TGAATAGTCATTGC
chr14	46488175	46488176	chr14:46488176:G:A	rs10135740	G	A	G	Sox1.mouse_HMG_4	8	1	-	5.433783180362278	5.292751882035139	TGAACAACCAATCA
chr14	46769402	46769403	chr14:46769403:T:C	rs3007061	T	C	T	Sox1.mouse_HMG_4	5	1	-	5.321061807850123	4.879282585244784	GGAACAAACAGTCA
chr14	47045221	47045222	chr14:47045222:A:C	rs35885183	A	C	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr14	47266815	47266816	chr14:47266816:A:G	rs17575074	A	G	A	Sox1.mouse_HMG_4	4	1	-	8.252681540047721	5.530664721220322	TGAATAATTAATCA
chr14	47997929	47997930	chr14:47997930:G:A	rs712450	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr14	48145987	48145988	chr14:48145988:G:A	rs4319659	G	A	a	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr14	48645031	48645032	chr14:48645032:C:A	rs56242697	C	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr14	49189987	49189988	chr14:49189988:G:A	rs11628006	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	49630607	49630608	chr14:49630608:C:T	rs76498454	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr14	49852966	49852967	chr14:49852967:A:G	rs7142952	A	G	A	Sox1.mouse_HMG_4	5	1	+	5.041695233980019	4.59991601137468	CGAATAAAGATTCA
chr14	49912043	49912044	chr14:49912044:T:A	rs141551203	T	A	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr14	49962142	49962143	chr14:49962143:G:A	rs17121911	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr14	49982468	49982469	chr14:49982469:C:T	rs10152079	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr14	50063881	50063882	chr14:50063882:G:A	rs17122039	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr14	50591008	50591009	chr14:50591009:G:A	rs1060197	G	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr14	50832649	50832650	chr14:50832650:T:G	rs55924012	T	G	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr14	50951141	50951142	chr14:50951142:T:C	rs75690812	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr14	50962118	50962119	chr14:50962119:T:C	rs79201733	T	C	T	Sox1.mouse_HMG_4	7	1	+	8.890676211000283	8.652763371815102	GGAACAGTTATTCA
chr14	50984547	50984548	chr14:50984548:C:G	rs11157785	C	G	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr14	51086915	51086916	chr14:51086916:T:G	rs75680591	T	G	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr14	51396303	51396304	chr14:51396304:A:G	rs188506948	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.5361146792183265	0.6533695632403571	CGAATATTTGTTCA
chr14	51411229	51411230	chr14:51411230:A:G	rs150112173	A	G	A	Sox1.mouse_HMG_4	11	1	-	5.875738705242604	-1.0046762089449661	TGAATTCAAATTCT
chr14	51566217	51566218	chr14:51566218:A:G	rs61969803	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr14	51599035	51599036	chr14:51599036:C:T	rs112442661	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr14	51716834	51716835	chr14:51716835:C:T	chr14:51716835:C:T	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr14	51732486	51732487	chr14:51732487:T:G	rs138478699	T	G	T	Sox1.mouse_HMG_4	5	1	+	6.7262478815492495	6.924355752420786	TGAATTAAAATCCA
chr14	51733499	51733500	chr14:51733500:T:A	rs999906	T	A	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr14	52079491	52079492	chr14:52079492:C:T	rs77831744	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr14	52079504	52079505	chr14:52079505:A:G	rs188959852	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr14	52111869	52111870	chr14:52111870:G:T	rs117529711	G	T	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr14	52323816	52323817	chr14:52323817:C:T	rs12587410	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr14	52335692	52335693	chr14:52335693:G:A	rs74049648	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr14	52920040	52920041	chr14:52920041:T:G	rs112270568	T	G	T	Sox1.mouse_HMG_4	13	1	-	5.315015719909668	1.716934169337902	TGAACAGATATTAA
chr14	52998910	52998911	chr14:52998911:G:T	rs77406662	G	T	G	Sox1.mouse_HMG_4	12	1	-	8.28236869067342	1.3736139113582	TGAAAAATTATTCA
chr14	53296144	53296145	chr14:53296145:A:G	rs187277384	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr14	53305868	53305869	chr14:53305869:C:T	rs573981090	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr14	53305874	53305875	chr14:53305875:A:T	rs139143131	A	T	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr14	53306028	53306029	chr14:53306029:T:A	rs17126312	T	A	T	Sox1.mouse_HMG_4	6	1	+	6.0335425436038435	6.359507902879912	GGAATGTGTATGCA
chr14	53306033	53306034	chr14:53306034:G:A	rs60080370	G	A	G	Sox1.mouse_HMG_4	11	1	+	6.0335425436038435	2.6672817318225848	GGAATGTGTATGCA
chr14	53382783	53382784	chr14:53382784:T:A	rs4898804	T	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr14	53389331	53389332	chr14:53389332:T:A	rs61986060	T	A	T	Sox1.mouse_HMG_4	11	1	+	8.096483107636917	1.2160681934493478	TTAATAAACATTCA
chr14	53408284	53408285	chr14:53408285:A:C	rs12436098	A	C	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr14	53410130	53410131	chr14:53410131:C:T	rs12896513	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr14	53432177	53432178	chr14:53432178:A:G	rs150139834	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr14	53494729	53494730	chr14:53494730:C:A	rs8004000	C	A	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr14	53744093	53744094	chr14:53744094:G:A	rs12894632	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr14	53894620	53894621	chr14:53894621:C:T	rs17127044	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr14	54105871	54105872	chr14:54105872:G:A	rs12879638	G	A	G	Sox1.mouse_HMG_4	0	1	-	4.3660744104978	8.2676241576724	CGAACAGCAAGTCA
chr14	54268031	54268032	chr14:54268032:T:C	rs1008499	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr14	54310253	54310254	chr14:54310254:C:T	rs12147623	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.027774738107058	0.11901995879183969	GGAATCTTAATTCA
chr14	54385815	54385816	chr14:54385816:G:T	rs2092684	G	T	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr14	54421104	54421105	chr14:54421105:G:A	rs4251681	G	A	g	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr14	54665280	54665281	chr14:54665281:A:G	rs79060535	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.496288716491589	3.774271897664188	TGAATAGGAATCCA
chr14	54674015	54674016	chr14:54674016:C:T	rs10139630	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr14	54931172	54931173	chr14:54931173:T:C	rs76959452	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr14	55111604	55111605	chr14:55111605:T:C	rs78727147	T	C	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr14	55410679	55410680	chr14:55410680:A:T	rs946057	A	T	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr14	55716408	55716409	chr14:55716409:G:A	rs12587803	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr14	55771742	55771743	chr14:55771743:A:G	rs10137782	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr14	56090626	56090627	chr14:56090627:T:C	rs241567	T	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr14	56174481	56174482	chr14:56174482:C:T	rs12892717	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr14	56211770	56211771	chr14:56211771:C:T	rs3783666	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr14	56217954	56217955	chr14:56217955:T:A	rs8015347	T	A	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr14	56222750	56222751	chr14:56222751:T:C	rs12877991	T	C	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr14	56264412	56264413	chr14:56264413:A:G	rs12883776	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr14	56378872	56378873	chr14:56378873:A:G	rs10483653	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr14	56543601	56543602	chr14:56543602:G:C	rs10142042	G	C	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr14	56707949	56707950	chr14:56707950:C:T	rs198257	C	T	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr14	57082385	57082386	chr14:57082386:C:T	rs1189839	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr14	57131955	57131956	chr14:57131956:T:A	rs3850299	T	A	T	Sox1.mouse_HMG_4	11	1	+	7.189947546436732	0.30953263224916294	TGAATTTCCACTCA
chr14	57651650	57651651	chr14:57651651:G:A	rs116878218	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr14	57660216	57660217	chr14:57660217:A:C	rs17093242	A	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr14	57735328	57735329	chr14:57735329:A:C	rs28395471	A	C	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr14	57774322	57774323	chr14:57774323:C:G	rs4901816	C	G	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr14	58226008	58226009	chr14:58226009:A:G	rs4035222	A	G	-	Sox1.mouse_HMG_4	11	1	-	8.304844332506676	1.424429418319107	TGAACTACCAGTCA
chr14	58587831	58587832	chr14:58587832:A:G	rs115579494	A	G	A	Sox1.mouse_HMG_4	6	1	+	7.207728916491729	7.289309645919019	TGAAGAAGCATTCA
chr14	58698398	58698399	chr14:58698399:C:G	rs115575516	C	G	C	Sox1.mouse_HMG_4	7	1	+	4.596084495583714	3.618326262260066	TGAATCACCACTCA
chr14	58912965	58912966	chr14:58912966:C:A	rs138266978	C	A	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr14	59199682	59199683	chr14:59199683:T:C	rs17255388	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr14	59245905	59245906	chr14:59245906:A:G	rs12050274	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr14	59364285	59364286	chr14:59364286:C:T	rs10083469	C	T	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr14	59376226	59376227	chr14:59376227:A:G	rs1752453	A	G	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr14	60164958	60164959	chr14:60164959:G:A	rs956163355	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr14	60574305	60574306	chr14:60574306:T:A	rs17097653	T	A	T	Sox1.mouse_HMG_4	2	1	-	4.102221066695602	-2.8065337126196193	TGAGTAGCAAGTCA
chr14	61133252	61133253	chr14:61133253:G:A	rs56078978	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr14	61148580	61148581	chr14:61148581:A:G	rs144565505	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr14	61324275	61324276	chr14:61324276:G:A	rs8017122	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr14	61471082	61471083	chr14:61471083:T:C	rs10483734	T	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr14	61620996	61620997	chr14:61620997:C:T	rs2253926	C	T	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr14	62209449	62209450	chr14:62209450:C:T	rs80019651	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr14	62289906	62289907	chr14:62289907:A:G	rs72722732	A	G	a	Sox1.mouse_HMG_4	3	1	+	10.785774593079642	3.8983546832754454	TGAATGGTAAGTCA
chr14	62840394	62840395	chr14:62840395:A:T	rs17100446	A	T	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr14	63311604	63311605	chr14:63311605:T:C	rs28481574	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.752964695374682	2.851414948200083	TGAGTTCTTATTCA
chr14	64497948	64497949	chr14:64497949:T:C	rs73267723	T	C	T	Sox1.mouse_HMG_4	0	1	+	14.303629518746195	10.402079771571598	TGAATTTTCATTCA
chr14	64720341	64720342	chr14:64720342:T:C	rs142560945	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr14	65174967	65174968	chr14:65174968:C:G	rs11158583	C	G	c	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr14	65409256	65409257	chr14:65409257:T:G	rs117229747	T	G	T	Sox1.mouse_HMG_4	1	1	+	5.4976790750293825	12.406433854344602	TTAACAATTATTCA
chr14	65865181	65865182	chr14:65865182:G:A	rs55861984	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr14	65866675	65866676	chr14:65866676:T:G	rs74940621	T	G	T	Sox1.mouse_HMG_4	13	1	-	4.867907959288633	1.2698264087168676	TGAGTAATCATGCA
chr14	66289167	66289168	chr14:66289168:G:C	rs10130480	G	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr14	66463906	66463907	chr14:66463907:T:G	rs7159194	T	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr14	67187758	67187759	chr14:67187759:T:G	rs6573755	T	G	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr14	67239557	67239558	chr14:67239558:T:C	rs1223610568	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr14	67248023	67248024	chr14:67248024:A:G	rs117135260	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr14	67248041	67248042	chr14:67248042:T:G	rs12323494	T	G	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr14	67309778	67309779	chr14:67309779:G:C	rs10129779	G	C	G	Sox1.mouse_HMG_4	12	1	-	6.669180250527944	-0.23957452878727725	TGAATTCTCATGCC
chr14	67520935	67520936	chr14:67520936:A:G	rs10130096	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr14	67552890	67552891	chr14:67552891:A:G	rs12433356	A	G	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr14	68366888	68366889	chr14:68366889:G:A	rs57439653	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr14	68440048	68440049	chr14:68440049:C:T	rs2331703	C	T	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr14	68561820	68561821	chr14:68561821:T:C	rs2842326	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr14	68575598	68575599	chr14:68575599:A:G	rs80044540	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr14	68723062	68723063	chr14:68723063:C:G	rs17757064	C	G	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr14	68794069	68794070	chr14:68794070:C:T	rs74060166	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr14	68841804	68841805	chr14:68841805:G:T	rs74801448	G	T	g	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr14	69242655	69242656	chr14:69242656:G:A	rs3173	G	A	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr14	69866637	69866638	chr14:69866638:G:A	rs1318485	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr14	69895207	69895208	chr14:69895208:C:T	rs79253476	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr14	70083272	70083273	chr14:70083273:A:C	rs12889279	A	C	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr14	70186060	70186061	chr14:70186061:C:A	rs8005206	C	A	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr14	70497011	70497012	chr14:70497012:G:A	rs61979137	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr14	71089737	71089738	chr14:71089738:A:T	rs2270040	A	T	A	Sox1.mouse_HMG_4	8	1	+	7.551551688684815	8.169208388096116	GGAACTATAATTCA
chr14	71135338	71135339	chr14:71135339:C:A	rs11849831	C	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr14	71135367	71135368	chr14:71135368:T:A	rs11846003	T	A	A	Sox1.mouse_HMG_4	3	1	-	7.966001442877849	1.078581533073651	TGAATCACTAGTCA
chr14	71138550	71138551	chr14:71138551:A:G	rs221899	A	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr14	71322922	71322923	chr14:71322923:A:T	chr14:71322923:A:T	A	T	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	71482952	71482953	chr14:71482953:C:G	rs1043492332	C	G	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr14	71698490	71698491	chr14:71698491:A:G	rs1859551	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr14	71753451	71753452	chr14:71753452:C:T	rs1204982	C	T	t	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr14	71864667	71864668	chr14:71864668:G:A	rs17768042	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr14	72117084	72117085	chr14:72117085:C:T	rs12880679	C	T	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr14	72181137	72181138	chr14:72181138:C:T	rs149653	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr14	72432979	72432980	chr14:72432980:G:C	rs7159534	G	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr14	72479025	72479026	chr14:72479026:C:T	rs74932222	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr14	72710302	72710303	chr14:72710303:G:A	rs73298196	G	A	G	Sox1.mouse_HMG_4	1	1	+	6.730893662612537	-0.17786111670268334	TGAATTAAAAATCA
chr14	72779717	72779718	chr14:72779718:C:A	rs11622025	C	A	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	73198144	73198145	chr14:73198145:G:T	rs165932	G	T	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr14	73582778	73582779	chr14:73582779:G:C	rs60396253	G	C	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr14	73824677	73824678	chr14:73824678:A:G	rs56111844	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr14	73824694	73824695	chr14:73824695:C:A	rs11625964	C	A	A	Sox1.mouse_HMG_4	6	1	+	6.671089836460435	7.519268810976681	TGAAATCACATTCA
chr14	73950905	73950906	chr14:73950906:T:C	rs59892091	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr14	74570046	74570047	chr14:74570047:A:G	rs146284051	A	G	A	Sox1.mouse_HMG_4	3	1	+	6.693278191430437	-0.19414171837376126	GGAATGAAAATGCA
chr14	74620663	74620664	chr14:74620664:C:G	rs567165865	C	G	c	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr14	74685364	74685365	chr14:74685365:G:T	rs12323528	G	T	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr14	74959928	74959929	chr14:74959929:A:C	rs894858763	A	C	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr14	75242862	75242863	chr14:75242863:T:C	rs8013918	T	C	C	Sox1.mouse_HMG_4	10	1	+	5.624580884224204	-1.2511882489000774	TGAATTGGAATGCC
chr14	75286387	75286388	chr14:75286388:G:A	rs145923863	G	A	G	Sox1.mouse_HMG_4	12	1	-	6.644503535462203	-0.2642512438530178	GGAATTAAAAGTCA
chr14	75380180	75380181	chr14:75380181:T:C	rs7160507	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr14	75585684	75585685	chr14:75585685:A:G	rs8019559	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr14	75978125	75978126	chr14:75978126:T:C	rs3917158	T	C	C	Sox1.mouse_HMG_4	13	1	-	11.005828720886843	4.123083604908874	TGAACATGCATTCA
chr14	76077164	76077165	chr14:76077165:T:G	rs78804650	T	G	T	Sox1.mouse_HMG_4	5	1	-	4.907642345656242	1.3479268420502788	GGAAGAGTCATTCA
chr14	76142545	76142546	chr14:76142546:G:A	rs115668473	G	A	G	Sox1.mouse_HMG_4	0	1	+	7.709211378861295	4.442307584982513	GGAATGGCCAGTCA
chr14	76459646	76459647	chr14:76459647:T:C	rs11848676	T	C	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr14	76695876	76695877	chr14:76695877:C:T	rs11620804	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr14	76743194	76743195	chr14:76743195:T:A	rs72735596	T	A	T	Sox1.mouse_HMG_4	6	1	-	4.584433718903798	4.25846835962773	TGAGTCACCATTCA
chr14	77238630	77238631	chr14:77238631:G:C	rs8010477	G	C	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr14	77275859	77275860	chr14:77275860:T:C	rs45518539	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr14	77275874	77275875	chr14:77275875:C:T	rs4141640	C	T	T	Sox1.mouse_HMG_4	6	1	+	3.351687699661783	3.8739013149019588	TGAATGCCCAAGCA
chr14	77655218	77655219	chr14:77655219:G:A	rs76391527	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr14	77775158	77775159	chr14:77775159:A:G	rs11620856	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr14	77844040	77844041	chr14:77844041:A:T	rs112639632	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr14	77863393	77863394	chr14:77863394:A:G	rs962539	A	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr14	78050016	78050017	chr14:78050017:C:A	rs4903696	C	A	A	Sox1.mouse_HMG_4	6	1	-	4.209046921913754	3.8015008332103957	AGAATGGCCATTCC
chr14	78921535	78921536	chr14:78921536:C:T	rs61994011	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr14	79516898	79516899	chr14:79516899:T:C	rs10151942	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr14	79561970	79561971	chr14:79561971:T:C	rs12433645	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr14	79586501	79586502	chr14:79586502:G:C	rs17109517	G	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr14	79661915	79661916	chr14:79661916:C:A	rs139082260	C	A	C	Sox1.mouse_HMG_4	1	1	-	7.551551688684815	0.6427969093695947	GGAACTATAATTCA
chr14	80205519	80205520	chr14:80205520:C:A	rs147405255	C	A	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr14	80475460	80475461	chr14:80475461:A:C	rs2197984	A	C	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr14	80567998	80567999	chr14:80567999:C:A	rs8014433	C	A	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr14	80955833	80955834	chr14:80955834:C:A	rs2234919	C	A	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr14	81282289	81282290	chr14:81282290:T:C	rs8011306	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr14	81311449	81311450	chr14:81311450:A:G	rs55744181	A	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr14	81565704	81565705	chr14:81565705:G:C	rs7140301	G	C	C	Sox1.mouse_HMG_4	1	1	+	4.205082455362726	-2.7036723239524907	GGTATTGTCATTCA
chr14	81600028	81600029	chr14:81600029:A:G	rs4904003	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr14	82011325	82011326	chr14:82011326:G:C	rs113373289	G	C	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr14	82528198	82528199	chr14:82528199:A:G	rs2888255	A	G	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr14	82779433	82779434	chr14:82779434:C:T	rs10129338	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr14	82827565	82827566	chr14:82827566:A:T	rs2372237	A	T	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr14	82956234	82956235	chr14:82956235:C:T	rs72703573	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr14	83017718	83017719	chr14:83017719:T:A	rs58739480	T	A	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr14	83258882	83258883	chr14:83258883:T:C	rs2372316	T	C	T	Sox1.mouse_HMG_4	0	1	+	3.7149198748765295	-0.1866298722980686	TGTATCCCCATTCA
chr14	83380062	83380063	chr14:83380063:C:G	rs229786	C	G	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr14	83422190	83422191	chr14:83422191:T:C	rs229827	T	C	T	Sox1.mouse_HMG_4	6	1	+	4.432028106219662	3.9098144909794863	TGAATATCCAGTGA
chr14	83780447	83780448	chr14:83780448:T:C	rs1958444	T	C	C	Sox1.mouse_HMG_4	4	1	+	10.168130036108279	7.446113217280879	TGAATCTGCATTCA
chr14	84572182	84572183	chr14:84572183:C:G	rs113320706	C	G	C	Sox1.mouse_HMG_4	9	1	+	6.8658418020680925	10.376790047689367	TGAATGCCCCTTCA
chr14	84975765	84975766	chr14:84975766:G:T	rs192617343	G	T	G	Sox1.mouse_HMG_4	7	1	+	4.062840807669641	5.278511880178473	TCAACGGGCATTCA
chr14	85118373	85118374	chr14:85118374:T:A	rs17258547	T	A	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr14	85214517	85214518	chr14:85214518:G:T	rs12432159	G	T	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr14	85390381	85390382	chr14:85390382:C:T	rs115311441	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr14	85536817	85536818	chr14:85536818:G:A	rs3742482	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr14	85572513	85572514	chr14:85572514:T:C	rs17114271	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr14	85853136	85853137	chr14:85853137:C:T	rs75392445	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr14	86382113	86382114	chr14:86382114:A:G	rs804963	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.586749755625502	3.864732936798103	TGAATTGGCATTGA
chr14	86413995	86413996	chr14:86413996:G:T	rs60640681	G	T	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr14	86418644	86418645	chr14:86418645:T:G	rs10146128	T	G	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr14	86739724	86739725	chr14:86739725:T:C	rs56108088	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.171188710078042	-2.7162311997261557	TGAATGGACCTTCC
chr14	86892255	86892256	chr14:86892256:C:G	rs12882103	C	G	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr14	88075086	88075087	chr14:88075087:G:A	rs28808353	G	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr14	88277756	88277757	chr14:88277757:A:T	rs1784797	A	T	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr14	88318053	88318054	chr14:88318054:G:T	rs12884581	G	T	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr14	88613906	88613907	chr14:88613907:G:A	rs74820426	G	A	g	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr14	88926093	88926094	chr14:88926094:C:T	rs17125008	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr14	89426029	89426030	chr14:89426030:G:A	rs141977182	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr14	89464602	89464603	chr14:89464603:C:T	rs8019702	C	T	T	Sox1.mouse_HMG_4	6	1	-	4.12831578504814	4.04673505562085	AGAACTGCAATTCA
chr14	89616643	89616644	chr14:89616644:C:T	rs61996554	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	89723978	89723979	chr14:89723979:G:A	rs8018867	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr14	89726448	89726449	chr14:89726449:A:G	rs8010614	A	G	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr14	89726469	89726470	chr14:89726470:T:C	rs138317809	T	C	T	Sox1.mouse_HMG_4	10	1	+	5.197316660508483	-1.678452472615798	TGAACAACCATGCC
chr14	90287211	90287212	chr14:90287212:A:G	rs6575122	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.642481597196545	0.7597364812185754	TGAAATATTATTCA
chr14	90624120	90624121	chr14:90624121:T:C	rs72691736	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr14	90637023	90637024	chr14:90637024:G:C	rs35729115	G	C	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr14	90729751	90729752	chr14:90729752:G:A	rs12887829	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr14	90733122	90733123	chr14:90733123:C:T	rs17721217	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr14	91364361	91364362	chr14:91364362:C:T	rs137899216	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.143558994001219	4.061978264573929	TGAAAAGCAAGTCA
chr14	91437362	91437363	chr14:91437363:T:A	rs1951247	T	A	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr14	91613934	91613935	chr14:91613935:C:T	rs1007562310	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr14	91844354	91844355	chr14:91844355:G:T	rs10145714	G	T	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr14	91997276	91997277	chr14:91997277:A:G	rs12433929	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr14	92408837	92408838	chr14:92408838:A:G	rs147170802	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr14	92408868	92408869	chr14:92408869:T:C	rs4904896	T	C	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr14	92571534	92571535	chr14:92571535:T:C	rs2104238	T	C	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr14	92577690	92577691	chr14:92577691:G:A	rs7159046	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr14	92669840	92669841	chr14:92669841:C:G	rs12897154	C	G	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr14	93471649	93471650	chr14:93471650:C:G	rs996661	C	G	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr14	93748114	93748115	chr14:93748115:T:C	chr14:93748115:T:C	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.592025388148512	2.6904756409739132	TGAATGAGTGTGCA
chr14	93836623	93836624	chr14:93836624:C:A	rs2093219	C	A	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr14	93860056	93860057	chr14:93860057:A:G	rs10134679	A	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr14	93960186	93960187	chr14:93960187:C:G	chr14:93960187:C:G	C	G	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr14	93983368	93983369	chr14:93983369:C:G	rs1884210	C	G	C	Sox1.mouse_HMG_4	12	1	+	7.313638849499632	0.40488407018441097	GGAACTACAATTCA
chr14	94029791	94029792	chr14:94029792:C:T	rs60647843	C	T	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr14	94097688	94097689	chr14:94097689:A:G	rs2896258	A	G	A	Sox1.mouse_HMG_4	9	1	+	14.053810898990307	10.6889900114873	TGAATAAGCATTCA
chr14	94224150	94224151	chr14:94224151:G:T	rs8012561	G	T	G	Sox1.mouse_HMG_4	8	1	-	11.119557024070104	10.360869026331661	TGAATCTACATTCA
chr14	94390251	94390252	chr14:94390252:C:A	rs17090745	C	A	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr14	94425881	94425882	chr14:94425882:A:C	rs11160177	A	C	C	Sox1.mouse_HMG_4	7	1	+	4.760002085261561	4.786333330623384	TGAATAAACAGCCA
chr14	94578095	94578096	chr14:94578096:A:C	rs10151533	A	C	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr14	94886796	94886797	chr14:94886797:C:G	rs1243488	C	G	C	Sox1.mouse_HMG_4	5	1	+	3.7432597400041816	6.8611960210048055	TGAATCCCCATCCA
chr14	94886814	94886815	chr14:94886815:C:T	rs73332612	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr14	94892918	94892919	chr14:94892919:C:T	rs139153904	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr14	94896358	94896359	chr14:94896359:A:G	rs1341001	A	G	G	Sox1.mouse_HMG_4	10	1	-	4.607056709654421	-2.268712423469861	GTAATAGCCATTCA
chr14	94918887	94918888	chr14:94918888:A:C	rs1243577	A	C	C	Sox1.mouse_HMG_4	9	1	+	4.311134554231019	-2.564634578893261	TGAAGGGCCATGCA
chr14	94999312	94999313	chr14:94999313:C:T	rs7150526	C	T	T	Sox1.mouse_HMG_4	6	1	+	6.782200085056885	7.304413700297062	TGAATACTAATACA
chr14	95019135	95019136	chr14:95019136:C:T	rs72704699	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr14	95072231	95072232	chr14:95072232:C:T	rs185100806	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr14	95340787	95340788	chr14:95340788:T:C	rs61983001	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr14	95340804	95340805	chr14:95340805:T:A	rs4905294	T	A	T	Sox1.mouse_HMG_4	11	1	+	8.198673032880917	1.3182581186933475	TGACCTGTCATTCA
chr14	95449317	95449318	chr14:95449318:G:C	rs117361699	G	C	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr14	95614066	95614067	chr14:95614067:T:C	rs4905346	T	C	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr14	95672661	95672662	chr14:95672662:T:C	rs1743495	T	C	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr14	95995080	95995081	chr14:95995081:C:G	rs942204	C	G	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr14	96016920	96016921	chr14:96016921:T:C	chr14:96016921:T:C	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr14	96083429	96083430	chr14:96083430:T:C	rs1951803	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr14	96085368	96085369	chr14:96085369:C:T	rs35247112	C	T	C	Sox1.mouse_HMG_4	6	1	+	6.603787214652634	7.126000829892812	GGAATGCACATGCA
chr14	96100223	96100224	chr14:96100224:C:T	rs181446960	C	T	C	Sox1.mouse_HMG_4	8	1	+	5.473739238854787	5.332707940527646	TGACCAGTCAGTCA
chr14	96101313	96101314	chr14:96101314:C:T	rs182335061	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr14	96193363	96193364	chr14:96193364:G:A	rs73357964	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr14	96193393	96193394	chr14:96193394:G:A	rs79034143	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr14	96508961	96508962	chr14:96508962:G:C	rs55747410	G	C	C	Sox1.mouse_HMG_4	12	1	-	6.719609436792258	-0.189145342522963	GGAATGACAATGCA
chr14	96825904	96825905	chr14:96825905:T:G	rs764300	T	G	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	96938643	96938644	chr14:96938644:C:T	rs111279106	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr14	96947942	96947943	chr14:96947943:A:G	rs55968162	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr14	97233896	97233897	chr14:97233897:C:G	rs12588170	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr14	97731580	97731581	chr14:97731581:A:G	rs1462253	A	G	A	Sox1.mouse_HMG_4	13	1	+	6.88286785491254	0.0001227389345705987	GGAATAGGTATGCA
chr14	97777642	97777643	chr14:97777643:T:C	rs8019467	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr14	97960631	97960632	chr14:97960632:C:T	rs138574724	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr14	98074279	98074280	chr14:98074280:G:A	rs698051	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr14	98173455	98173456	chr14:98173456:C:T	rs28640217	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.259333613707014	7.118302315379873	TGAACTGGCATGCA
chr14	98212733	98212734	chr14:98212734:A:T	rs12894205	A	T	A	Sox1.mouse_HMG_4	2	1	+	7.6233740639565015	0.7146192846412813	TGATTAATAATTCA
chr14	98371479	98371480	chr14:98371480:C:G	rs74077458	C	G	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr14	98507521	98507522	chr14:98507522:A:G	rs17097066	A	G	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr14	98507525	98507526	chr14:98507526:A:C	rs17508983	A	C	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr14	98586425	98586426	chr14:98586426:G:A	rs73401572	G	A	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr14	98586437	98586438	chr14:98586438:A:G	rs74078053	A	G	A	Sox1.mouse_HMG_4	10	1	-	6.867288121399483	-0.008481011724799536	TGAATGCTCATGCC
chr14	98839929	98839930	chr14:98839930:A:C	rs74080420	A	C	A	Sox1.mouse_HMG_4	9	1	+	4.872582753114862	-2.003186380009418	TGAATAATCATGCT
chr14	99011414	99011415	chr14:99011415:C:T	rs17098188	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr14	99079047	99079048	chr14:99079048:A:C	rs7157886	A	C	A	Sox1.mouse_HMG_4	8	1	+	9.161145448448965	9.919833446187406	GGAATTCAAATTCA
chr14	99082707	99082708	chr14:99082708:T:C	rs10151969	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr14	99098863	99098864	chr14:99098864:G:A	rs17631887	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr14	99102301	99102302	chr14:99102302:T:C	rs1268698	T	C	t	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr14	99129197	99129198	chr14:99129198:C:T	rs150496806	C	T	C	Sox1.mouse_HMG_4	1	1	-	5.1247624082362435	-1.783992371078979	CGAACAGCCAGTCA
chr14	99177714	99177715	chr14:99177715:A:C	rs73420765	A	C	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr14	99331834	99331835	chr14:99331835:G:C	rs1270545	G	C	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr14	99530212	99530213	chr14:99530213:A:T	rs77149228	A	T	A	Sox1.mouse_HMG_4	8	1	-	5.494128724218875	4.876472024807573	TGAACAGATGGTCA
chr14	99629311	99629312	chr14:99629312:A:T	rs115893405	A	T	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr14	99685497	99685498	chr14:99685498:C:G	rs182319406	C	G	C	Sox1.mouse_HMG_4	1	1	-	8.99998091004902	2.0912261307338014	TGAACAGACAGTCA
chr14	99751944	99751945	chr14:99751945:G:C	rs10148112	G	C	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr14	99809919	99809920	chr14:99809920:C:A	rs528613417	C	A	C	Sox1.mouse_HMG_4	5	1	+	6.044621150866829	9.60433665447279	TGAATCTGAGTTCA
chr14	99874245	99874246	chr14:99874246:C:T	rs6575751	C	T	T	Sox1.mouse_HMG_4	12	1	+	10.060094289097103	3.1513395097818826	TGAATGCATATGCA
chr14	100030712	100030713	chr14:100030713:C:T	rs538136791	C	T	C	Sox1.mouse_HMG_4	1	1	-	5.976465971059445	-0.9322888082557743	GGAATTTGCATGCA
chr14	100079391	100079392	chr14:100079392:A:G	rs112278458	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr14	100080117	100080118	chr14:100080118:A:G	rs61984509	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr14	100105128	100105129	chr14:100105129:A:G	rs12101038	A	G	a	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr14	100434900	100434901	chr14:100434901:C:T	rs34657274	C	T	c	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr14	100576046	100576047	chr14:100576047:T:A	rs145934627	T	A	T	Sox1.mouse_HMG_4	13	1	-	5.140159830924844	-1.7425852850531247	TGAAAAGTCAGTCA
chr14	100576049	100576050	chr14:100576050:C:T	rs59781062	C	T	C	Sox1.mouse_HMG_4	10	1	-	5.140159830924844	1.62921158530357	TGAAAAGTCAGTCA
chr14	100630268	100630269	chr14:100630269:A:G	rs1190904	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr14	100640540	100640541	chr14:100640541:A:G	rs1190914	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr14	101068205	101068206	chr14:101068206:G:A	rs75812127	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr14	101102125	101102126	chr14:101102126:A:G	rs17584795	A	G	A	Sox1.mouse_HMG_4	0	1	+	5.526890876263459	8.79379467014224	AGAACAGCCATTCA
chr14	101202752	101202753	chr14:101202753:G:A	rs11160635	G	A	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr14	102079689	102079690	chr14:102079690:C:T	rs35840380	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr14	102240684	102240685	chr14:102240685:G:C	rs150653905	G	C	-	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr14	102420793	102420794	chr14:102420794:A:C	rs3742434	A	C	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr14	102438749	102438750	chr14:102438750:G:C	rs1190547	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr14	102778652	102778653	chr14:102778653:C:G	rs138418721	C	G	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr14	102819874	102819875	chr14:102819875:G:C	rs187147834	G	C	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr14	102819881	102819882	chr14:102819882:A:G	rs544953568	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr14	102949570	102949571	chr14:102949571:C:T	rs1358561161	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr14	103213698	103213699	chr14:103213699:G:T	rs2771373	G	T	G	Sox1.mouse_HMG_4	12	1	-	7.099108860189989	0.19035408087476813	TGAATGCTCATCCA
chr14	103227540	103227541	chr14:103227541:G:A	rs55953635	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr14	103283943	103283944	chr14:103283944:G:T	rs11626610	G	T	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr14	103455125	103455126	chr14:103455126:T:C	rs10135077	T	C	T	Sox1.mouse_HMG_4	4	1	+	5.849729041905353	3.1277122230779533	TGAATTCAAATTTA
chr14	103595656	103595657	chr14:103595657:C:T	rs143723839	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr14	104385701	104385702	chr14:104385702:G:T	rs74088601	G	T	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr14	104494522	104494523	chr14:104494523:G:A	rs4384541	G	A	N	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr14	104504634	104504635	chr14:104504635:G:A	rs150521726	G	A	g	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr14	104973213	104973214	chr14:104973214:G:A	rs11852033	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr14	105514903	105514904	chr14:105514904:C:T	rs13379293	C	T	.	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr14	106216910	106216911	chr14:106216911:A:G	rs12437136	A	G	.	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr14	106436729	106436730	chr14:106436730:C:T	rs7143958	C	T	N	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr14	106580980	106580981	chr14:106580981:G:T	rs57767447	G	T	g	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr14	106619986	106619987	chr14:106619987:C:A	rs4774167	C	A	N	Sox1.mouse_HMG_4	6	1	+	6.832856155877154	7.6810351303934	TAAATGCCCATTCA
chr14	106776694	106776695	chr14:106776695:A:G	rs10141009	A	G	.	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr14	106776697	106776698	chr14:106776698:A:G	rs988134	A	G	.	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr14	106776723	106776724	chr14:106776724:A:G	rs988133	A	G	.	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr14	106821416	106821417	chr14:106821417:A:T	rs7159937	A	T	.	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr15	20293968	20293969	chr15:20293969:T:A	rs4598882	T	A	t	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr15	20339626	20339627	chr15:20339627:T:C	rs7170319	T	C	N	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr15	20382767	20382768	chr15:20382768:A:G	rs1846766	A	G	.	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr15	22884807	22884808	chr15:22884808:G:A	rs7403003	G	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr15	22919247	22919248	chr15:22919248:C:T	rs12443254	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr15	23096516	23096517	chr15:23096517:A:G	rs4258578	A	G	a	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr15	23565613	23565614	chr15:23565614:A:C	rs1008453301	A	C	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr15	23804616	23804617	chr15:23804617:G:C	rs34852791	G	C	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr15	23804645	23804646	chr15:23804646:C:G	rs72703961	C	G	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr15	24060664	24060665	chr15:24060665:T:C	rs74003428	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr15	24690217	24690218	chr15:24690218:C:T	rs2219074	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr15	25631843	25631844	chr15:25631844:C:A	rs872282	C	A	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr15	25753890	25753891	chr15:25753891:C:G	rs9972473	C	G	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr15	25785796	25785797	chr15:25785797:A:G	rs935254	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr15	26087859	26087860	chr15:26087860:G:A	rs12441590	G	A	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr15	26719865	26719866	chr15:26719866:A:G	rs17647185	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.316214242890393	1.5941974240629941	TCAATGACCAGTCA
chr15	26724923	26724924	chr15:26724924:G:A	rs60746076	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr15	26875516	26875517	chr15:26875517:G:A	rs28678281	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr15	26889658	26889659	chr15:26889659:A:G	rs72712074	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr15	27482465	27482466	chr15:27482466:T:A	rs71465239	T	A	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr15	27491692	27491693	chr15:27491693:C:T	rs60853391	C	T	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr15	27512428	27512429	chr15:27512429:G:A	rs1477822	G	A	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr15	28017584	28017585	chr15:28017585:C:T	rs1212518026	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr15	28017587	28017588	chr15:28017588:G:A	rs75228873	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr15	29018459	29018460	chr15:29018460:A:G	rs1565404	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr15	29040822	29040823	chr15:29040823:T:C	rs12441723	T	C	C	Sox1.mouse_HMG_4	9	1	-	4.9175478031704145	1.5527269156674077	TGAAGAATTAGTCA
chr15	29698768	29698769	chr15:29698769:A:G	rs112979357	A	G	a	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr15	29821060	29821061	chr15:29821061:G:C	rs6495935	G	C	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr15	29941314	29941315	chr15:29941315:T:C	rs62014517	T	C	T	Sox1.mouse_HMG_4	10	1	+	6.295939778717685	-0.5798293544065969	TGACTGCCTATGCA
chr15	29941320	29941321	chr15:29941321:G:A	rs62014518	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr15	30039205	30039206	chr15:30039206:C:T	rs75948248	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.229916796942122	7.951933615769522	TGAACGATCTTTCA
chr15	31060681	31060682	chr15:31060682:C:T	rs117873014	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr15	31113204	31113205	chr15:31113205:A:T	rs4041971	A	T	T	Sox1.mouse_HMG_4	4	1	-	7.5042621290328855	0.6581801465343038	TGAGTTACCATTCA
chr15	31164440	31164441	chr15:31164441:C:T	rs1463408	C	T	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr15	31164474	31164475	chr15:31164475:T:C	rs1965249	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr15	31308523	31308524	chr15:31308524:C:T	rs73381250	C	T	C	Sox1.mouse_HMG_4	11	1	-	7.889277190084636	4.523016378303377	TGAATGGTTGTGCA
chr15	31412843	31412844	chr15:31412844:C:T	rs11630485	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr15	31475722	31475723	chr15:31475723:T:C	rs570487326	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr15	31524017	31524018	chr15:31524018:A:T	rs16956830	A	T	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr15	31673489	31673490	chr15:31673490:C:T	rs4779913	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr15	31847118	31847119	chr15:31847119:G:A	rs11637084	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr15	32616903	32616904	chr15:32616904:C:T	rs1262106332	C	T	.	Sox1.mouse_HMG_4	1	1	-	10.363024652211232	3.454269872896014	TGAATATGCAGTCA
chr15	32724276	32724277	chr15:32724277:G:C	rs10519738	G	C	c	Sox1.mouse_HMG_4	1	1	+	8.359174158276906	1.4504193789616844	TGAACATACATTCC
chr15	32937140	32937141	chr15:32937141:C:A	rs347915	C	A	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr15	33031857	33031858	chr15:33031858:T:C	rs2169938	T	C	T	Sox1.mouse_HMG_4	10	1	+	8.777368882294592	1.9015997491703105	TGAACAAATGTTCA
chr15	33111087	33111088	chr15:33111088:A:G	rs143902275	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr15	33369976	33369977	chr15:33369977:T:C	rs1317242	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr15	33543853	33543854	chr15:33543854:C:T	rs3816092	C	T	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr15	33572408	33572409	chr15:33572409:G:C	rs7167772	G	C	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr15	33588291	33588292	chr15:33588292:A:G	rs688939	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr15	33700758	33700759	chr15:33700759:G:C	rs7175886	G	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr15	33700775	33700776	chr15:33700776:C:T	rs113929921	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	33700780	33700781	chr15:33700781:A:G	rs1217998703	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr15	33705400	33705401	chr15:33705401:C:T	rs6495219	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	33822795	33822796	chr15:33822796:G:A	rs8030909	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr15	33964056	33964057	chr15:33964057:G:A	rs77250014	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr15	33964058	33964059	chr15:33964059:T:C	rs493857	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	34100606	34100607	chr15:34100607:T:C	rs8033335	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr15	34368282	34368283	chr15:34368283:G:A	rs79062216	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr15	34426226	34426227	chr15:34426227:T:C	rs2644232	T	C	t	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr15	34799044	34799045	chr15:34799045:G:T	rs73389609	G	T	G	Sox1.mouse_HMG_4	12	1	-	4.2373249237535076	-2.671429855561713	TGAATTGTCACTCC
chr15	35244038	35244039	chr15:35244039:T:C	rs318336	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.7262478815492495	-0.16117202825494892	TGAATTAAAATCCA
chr15	35658342	35658343	chr15:35658343:C:A	rs76177164	C	A	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr15	35713236	35713237	chr15:35713237:C:T	rs2339965	C	T	T	Sox1.mouse_HMG_4	1	1	-	8.099705335553706	1.1909505562384866	TGAAAAGATATTCA
chr15	35775975	35775976	chr15:35775976:A:G	rs76442067	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr15	35776000	35776001	chr15:35776001:T:C	rs17593461	T	C	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr15	35987844	35987845	chr15:35987845:T:A	rs1030976087	T	A	T	Sox1.mouse_HMG_4	3	1	-	7.219634697062434	0.3322147872582353	TGAAATTCCATTCA
chr15	36108586	36108587	chr15:36108587:G:A	rs11631486	G	A	G	Sox1.mouse_HMG_4	4	1	-	4.723368683835616	7.445385502663015	TGAACAGAAATTCT
chr15	36178063	36178064	chr15:36178064:T:C	rs183858108	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr15	36302465	36302466	chr15:36302466:A:G	rs10518869	A	G	G	Sox1.mouse_HMG_4	9	1	+	7.515912905712801	4.151092018209794	TGAATTACCACTCA
chr15	36406181	36406182	chr15:36406182:A:G	rs16962956	A	G	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr15	36432155	36432156	chr15:36432156:T:A	rs877652	T	A	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr15	36742939	36742940	chr15:36742940:G:A	rs11637547	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr15	36881177	36881178	chr15:36881178:T:C	rs16964235	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	37517406	37517407	chr15:37517407:A:G	rs75355710	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr15	37637723	37637724	chr15:37637724:C:T	rs34514770	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr15	37819526	37819527	chr15:37819527:A:G	rs10520082	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr15	37885756	37885757	chr15:37885757:C:A	rs8030904	C	A	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr15	37894541	37894542	chr15:37894542:T:G	rs1502408	T	G	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr15	38254780	38254781	chr15:38254781:G:C	rs7175472	G	C	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	38254794	38254795	chr15:38254795:C:G	rs7176982	C	G	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr15	38387392	38387393	chr15:38387393:G:T	rs12441150	G	T	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr15	38531325	38531326	chr15:38531326:C:T	rs72727381	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.945740825348975	4.864160095921685	CGAATGGTGATTCA
chr15	38577464	38577465	chr15:38577465:G:A	rs17651741	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr15	38822828	38822829	chr15:38822829:C:A	rs8035090	C	A	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr15	38962187	38962188	chr15:38962188:G:A	rs61341654	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	39014631	39014632	chr15:39014632:A:G	rs76145101	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	39669324	39669325	chr15:39669325:C:T	rs11857927	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr15	39804288	39804289	chr15:39804289:T:C	rs661197	T	C	C	Sox1.mouse_HMG_4	0	1	+	4.549209681692578	0.6476599345179783	TGAATAGCTATGAA
chr15	39947095	39947096	chr15:39947096:C:T	rs17720383	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr15	40006491	40006492	chr15:40006492:G:A	rs73388599	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr15	40250645	40250646	chr15:40250646:A:C	rs72731470	A	C	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr15	40257671	40257672	chr15:40257672:T:C	rs62020054	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr15	40257675	40257676	chr15:40257676:C:A	rs34099104	C	A	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr15	40352896	40352897	chr15:40352897:G:C	rs7164581	G	C	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr15	40724359	40724360	chr15:40724360:A:G	rs11070291	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr15	40766508	40766509	chr15:40766509:G:A	rs116463457	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr15	41899841	41899842	chr15:41899842:T:C	rs1048166	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	41899869	41899870	chr15:41899870:A:C	rs74573199	A	C	A	Sox1.mouse_HMG_4	13	1	+	4.0453575106920425	0.44727596012027737	TGATTTGACATGCA
chr15	42096438	42096439	chr15:42096439:A:G	rs2003956	A	G	a	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr15	42458052	42458053	chr15:42458053:C:G	rs895764265	C	G	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr15	42665333	42665334	chr15:42665334:T:G	rs8024902	T	G	T	Sox1.mouse_HMG_4	10	1	+	7.118302315379873	3.7534814278768662	TGAACTGGTATGCA
chr15	42784802	42784803	chr15:42784803:T:C	rs35298309	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	43599036	43599037	chr15:43599037:G:C	rs56397895	G	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr15	44853436	44853437	chr15:44853437:A:G	rs114572731	A	G	N	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr15	45027451	45027452	chr15:45027452:G:A	rs58805743	G	A	g	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr15	45394235	45394236	chr15:45394236:T:C	rs60639238	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr15	45443596	45443597	chr15:45443597:T:C	rs144138935	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr15	45476562	45476563	chr15:45476563:T:C	rs78321181	T	C	t	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr15	45704674	45704675	chr15:45704675:G:A	rs528536091	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr15	45704698	45704699	chr15:45704699:G:T	rs2139647	G	T	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr15	46240330	46240331	chr15:46240331:T:C	rs2899388	T	C	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr15	46581156	46581157	chr15:46581157:T:G	rs1431613	T	G	G	Sox1.mouse_HMG_4	0	1	+	4.371463726955861	0.7741253541842539	TCAATGGACAGTCA
chr15	47140301	47140302	chr15:47140302:C:T	rs28417512	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr15	47376480	47376481	chr15:47376481:G:A	rs79154484	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr15	47493545	47493546	chr15:47493546:C:T	rs56683038	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr15	47654564	47654565	chr15:47654565:C:G	rs77609223	C	G	C	Sox1.mouse_HMG_4	13	1	+	10.354406059139349	7.069742493733145	TGAATTGTAATTCC
chr15	47692194	47692195	chr15:47692195:A:G	rs17327971	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr15	47746661	47746662	chr15:47746662:A:T	rs1153819	A	T	T	Sox1.mouse_HMG_4	9	1	+	8.241292912310579	1.365523779186298	TGAACAGAAAGTCA
chr15	47796020	47796021	chr15:47796021:C:T	rs12050539	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr15	47796046	47796047	chr15:47796047:A:T	rs12050538	A	T	A	Sox1.mouse_HMG_4	7	1	+	4.7348844480507	4.999128532597704	TGAAGAGATAGTCA
chr15	47861441	47861442	chr15:47861442:T:C	rs16952918	T	C	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	47963394	47963395	chr15:47963395:C:T	rs73398680	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.1005487844682404	0.1917940051530198	TGAATGCTCAGGCA
chr15	48373851	48373852	chr15:48373852:C:T	rs141591588	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.011935072393095	-2.8968197069221215	TGTCTTGTCATTCA
chr15	48472846	48472847	chr15:48472847:T:G	rs28730795	T	G	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr15	48719737	48719738	chr15:48719738:T:C	rs12594187	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr15	49238994	49238995	chr15:49238995:C:T	rs520949	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr15	49361813	49361814	chr15:49361814:A:G	rs8024378	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr15	49521066	49521067	chr15:49521067:T:C	rs11631904	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.920887991202182	1.0381428752242128	TGAACACACATGCA
chr15	49815057	49815058	chr15:49815058:C:T	rs1848282	C	T	C	Sox1.mouse_HMG_4	6	1	-	5.456047018236808	5.374466288809518	TCAACAGACATTCA
chr15	50191538	50191539	chr15:50191539:T:C	rs933856	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr15	50653339	50653340	chr15:50653340:C:T	rs8023582	C	T	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr15	50654617	50654618	chr15:50654618:A:G	rs11070802	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr15	51060051	51060052	chr15:51060052:A:G	rs1124769	A	G	A	Sox1.mouse_HMG_4	5	1	+	4.532130381056248	4.090351158450909	GGAATAAACACTCA
chr15	51347623	51347624	chr15:51347624:G:A	rs2124872	G	A	G	Sox1.mouse_HMG_4	0	1	-	4.216741195594496	8.118290942769097	CGAACAGCAATGCA
chr15	51403537	51403538	chr15:51403538:A:T	rs2470193	A	T	A	Sox1.mouse_HMG_4	13	1	+	13.870906880283822	6.988161764305854	TGAATTATAATTCA
chr15	51460330	51460331	chr15:51460331:C:G	rs138945149	C	G	C	Sox1.mouse_HMG_4	12	1	+	3.9237389094627293	-2.9850158698524902	CGAAGGGCCATTCA
chr15	52370046	52370047	chr15:52370047:A:G	chr15:52370047:A:G	A	G	A	Sox1.mouse_HMG_4	9	1	+	11.87035788436059	8.505536996857584	TGAACAGTAATTCA
chr15	52523459	52523460	chr15:52523460:G:A	rs11856626	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr15	52769570	52769571	chr15:52769571:G:A	rs74688537	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr15	52791341	52791342	chr15:52791342:G:C	chr15:52791342:G:C	G	C	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr15	52987093	52987094	chr15:52987094:G:A	rs719715	G	A	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr15	53863886	53863887	chr15:53863887:A:G	rs1478195	A	G	A	Sox1.mouse_HMG_4	3	1	+	11.699286178155496	4.8118662683513	TGAACACTCATTCA
chr15	53953631	53953632	chr15:53953632:G:C	rs2616919	G	C	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr15	53976877	53976878	chr15:53976878:A:G	rs4776197	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr15	53988984	53988985	chr15:53988985:A:G	rs7177860	A	G	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr15	54802627	54802628	chr15:54802628:T:G	rs11071130	T	G	T	Sox1.mouse_HMG_4	4	1	+	4.841582814688852	-2.004499167809729	TGAATAGACAGACA
chr15	55495054	55495055	chr15:55495055:T:C	rs16976343	T	C	C	Sox1.mouse_HMG_4	5	1	-	7.77051774836085	7.328738525755509	TGAATATACATTTA
chr15	55498325	55498326	chr15:55498326:G:A	rs143493699	G	A	G	Sox1.mouse_HMG_4	7	1	+	3.6912280953472534	4.642655083309081	TGAAGAGGCATTCC
chr15	55498331	55498332	chr15:55498332:C:T	rs3743205	C	T	C	Sox1.mouse_HMG_4	13	1	+	3.6912280953472534	0.40656452994104963	TGAAGAGGCATTCC
chr15	55498332	55498333	chr15:55498333:G:A	rs200602471	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr15	55498341	55498342	chr15:55498342:G:A	rs61753409	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr15	55498341	55498342	chr15:55498342:G:C	chr15:55498342:G:C	G	C	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr15	55991493	55991494	chr15:55991494:A:T	rs144061443	A	T	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr15	55991528	55991529	chr15:55991529:A:C	rs12911653	A	C	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr15	56086705	56086706	chr15:56086706:C:T	rs61466134	C	T	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr15	56364527	56364528	chr15:56364528:G:T	rs72740595	G	T	G	Sox1.mouse_HMG_4	1	1	+	7.088245443060722	0.17949066374550182	AGAATTGTAATTCA
chr15	57025869	57025870	chr15:57025870:A:G	rs76616229	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr15	57216428	57216429	chr15:57216429:G:A	rs72733925	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr15	57216464	57216465	chr15:57216465:A:G	rs2615220	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr15	57301867	57301868	chr15:57301868:T:C	rs2440979	T	C	T	Sox1.mouse_HMG_4	11	1	+	6.905646770381738	0.025231856194168456	TGAATTCTCAATCA
chr15	57432253	57432254	chr15:57432254:T:G	rs1370131750	T	G	T	Sox1.mouse_HMG_4	0	1	+	10.213691437307928	6.616353064536323	TGAATATGCATGCA
chr15	57581239	57581240	chr15:57581240:C:T	rs935549	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr15	58168518	58168519	chr15:58168519:A:G	rs2414543	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.1652774870490825	0.8004565995460744	GGAATGGCCATTGA
chr15	58435487	58435488	chr15:58435488:T:C	rs62000939	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr15	58475710	58475711	chr15:58475711:G:T	rs114604477	G	T	G	Sox1.mouse_HMG_4	1	1	+	4.114084859916356	-2.7946699193988644	TGAATGGATTTGCA
chr15	58632850	58632851	chr15:58632851:G:C	rs12907237	G	C	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr15	58772398	58772399	chr15:58772399:T:C	rs138214495	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr15	58882339	58882340	chr15:58882340:G:T	rs7179456	G	T	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr15	58932542	58932543	chr15:58932543:A:G	rs74017311	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr15	59267323	59267324	chr15:59267324:C:T	rs67959850	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	59295138	59295139	chr15:59295139:T:C	rs541619325	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr15	59366557	59366558	chr15:59366558:C:T	rs8031423	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr15	59396460	59396461	chr15:59396461:T:C	rs57822978	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	59492975	59492976	chr15:59492976:G:C	rs117910370	G	C	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr15	59507078	59507079	chr15:59507079:T:C	rs4278683	T	C	C	Sox1.mouse_HMG_4	0	1	+	4.918019264774381	1.0164695175997818	TGAACCTCTGTTCA
chr15	59907614	59907615	chr15:59907615:T:C	rs74316921	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr15	60359134	60359135	chr15:60359135:C:T	rs144337272	C	T	C	Sox1.mouse_HMG_4	9	1	-	3.9381543561071366	7.3029752436101445	TGAATACCCGTCCA
chr15	60376677	60376678	chr15:60376678:G:A	rs10444804	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr15	60751178	60751179	chr15:60751179:G:A	rs8025324	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr15	60775178	60775179	chr15:60775179:C:T	rs13380422	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr15	60993705	60993706	chr15:60993706:T:C	rs150357359	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	60993732	60993733	chr15:60993733:C:G	rs114132762	C	G	C	Sox1.mouse_HMG_4	12	1	+	6.8726611241908	-0.036093655124420865	TTAATTCTCATTCA
chr15	61907711	61907712	chr15:61907712:T:A	rs12441358	T	A	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr15	62029078	62029079	chr15:62029079:G:A	rs112885781	G	A	g	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr15	62327531	62327532	chr15:62327532:C:T	rs145321842	C	T	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr15	62525030	62525031	chr15:62525031:A:G	rs12708474	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr15	62604097	62604098	chr15:62604098:T:G	rs4265758	T	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	62776188	62776189	chr15:62776189:C:T	rs11853366	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr15	62879554	62879555	chr15:62879555:A:C	rs577800	A	C	C	Sox1.mouse_HMG_4	10	1	-	5.341084879208105	1.9762639917050977	TGAACATTCATCCA
chr15	63057698	63057699	chr15:63057699:C:G	rs77034170	C	G	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr15	63214245	63214246	chr15:63214246:A:G	rs1910093	A	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr15	63372875	63372876	chr15:63372876:C:T	rs115395900	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr15	63918475	63918476	chr15:63918476:G:A	rs2414844	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr15	63929369	63929370	chr15:63929370:C:T	rs7177464	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr15	64472543	64472544	chr15:64472544:T:C	rs540825767	T	C	T	Sox1.mouse_HMG_4	5	1	+	14.303629518746195	11.38380110861711	TGAATTTTCATTCA
chr15	64681411	64681412	chr15:64681412:G:A	rs11631564	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr15	64779218	64779219	chr15:64779219:T:C	rs117102248	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	64961127	64961128	chr15:64961128:C:G	rs7168348	C	G	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr15	65060759	65060760	chr15:65060760:G:A	rs1470607472	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	65209434	65209435	chr15:65209435:A:G	rs776132772	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr15	65836872	65836873	chr15:65836873:G:A	rs112470118	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	66023482	66023483	chr15:66023483:C:A	rs530642459	C	A	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr15	66079511	66079512	chr15:66079512:C:T	rs8034323	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr15	66237654	66237655	chr15:66237655:T:C	rs4776769	T	C	T	Sox1.mouse_HMG_4	13	1	-	3.9365447144070895	-2.9462004015708794	GGATTACTCATTCA
chr15	66261310	66261311	chr15:66261311:C:T	rs1355857	C	T	T	Sox1.mouse_HMG_4	10	1	-	7.12927450788134	3.618326262260066	TGAATCAGCAGTCA
chr15	66278164	66278165	chr15:66278165:G:A	rs34638752	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	66438946	66438947	chr15:66438947:G:C	rs8036023	G	C	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr15	66558618	66558619	chr15:66558619:C:G	rs7165318	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr15	66717737	66717738	chr15:66717738:A:G	rs12907408	A	G	A	Sox1.mouse_HMG_4	13	1	+	3.8023620983355633	-3.080383017642406	TGACTTGCCATACA
chr15	66727609	66727610	chr15:66727610:C:G	rs2469090	C	G	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr15	66727636	66727637	chr15:66727637:A:T	rs55970476	A	T	A	Sox1.mouse_HMG_4	5	1	-	6.649422552442142	7.289309645919019	TGAAGTGGCATTCA
chr15	66751334	66751335	chr15:66751335:A:G	rs572696436	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr15	66826021	66826022	chr15:66826022:A:G	rs2091822	A	G	a	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr15	66826032	66826033	chr15:66826033:C:G	rs74434967	C	G	C	Sox1.mouse_HMG_4	10	1	+	7.545533863858616	11.056482109479889	TGAATACTCACTCA
chr15	66858993	66858994	chr15:66858994:T:C	rs4776838	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr15	66894480	66894481	chr15:66894481:G:A	rs2464859	G	A	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr15	66901637	66901638	chr15:66901638:G:A	rs3852629	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr15	66949752	66949753	chr15:66949753:C:T	rs904368	C	T	c	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr15	67025690	67025691	chr15:67025691:T:C	rs12907153	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr15	67240965	67240966	chr15:67240966:T:C	rs4776348	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr15	67548321	67548322	chr15:67548322:A:G	rs28368738	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.816541062177528	-2.0592280709467525	TGAACACTCATTCT
chr15	67641553	67641554	chr15:67641554:C:T	rs28735117	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr15	68026324	68026325	chr15:68026325:G:T	rs28609584	G	T	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr15	68311836	68311837	chr15:68311837:A:G	rs898590	A	G	G	Sox1.mouse_HMG_4	10	1	-	9.033311050265432	2.1575419171411507	TGAACAATCATGCA
chr15	68560201	68560202	chr15:68560202:T:C	rs12912092	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr15	68789301	68789302	chr15:68789302:C:G	rs139711653	C	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr15	69092036	69092037	chr15:69092037:C:T	rs4777111	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr15	69092038	69092039	chr15:69092039:A:C	rs4777112	A	C	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr15	69100052	69100053	chr15:69100053:G:A	rs4777114	G	A	G	Sox1.mouse_HMG_4	11	1	+	8.054581067159729	4.68832025537847	TGAATCATTATGCA
chr15	69479561	69479562	chr15:69479562:A:G	rs2134927	A	G	a	Sox1.mouse_HMG_4	4	1	-	4.54075817443661	1.8187413556092114	CTAATAGTCATTCA
chr15	69667186	69667187	chr15:69667187:C:T	rs370804494	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr15	69686246	69686247	chr15:69686247:T:C	chr15:69686247:T:C	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.727138809904268	-2.1486303232200124	TGAACAGAAGTGCA
chr15	69918121	69918122	chr15:69918122:G:A	rs4777210	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr15	69922473	69922474	chr15:69922474:C:A	rs77621807	C	A	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr15	70033405	70033406	chr15:70033406:T:G	rs72749638	T	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr15	70295319	70295320	chr15:70295320:A:G	rs1553927	A	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	70295324	70295325	chr15:70295325:G:A	rs2458174	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr15	70306222	70306223	chr15:70306223:G:C	rs62000503	G	C	G	Sox1.mouse_HMG_4	11	1	+	4.486374596599561	1.1201137848183034	TGAATGGTCATGTA
chr15	70319290	70319291	chr15:70319291:C:T	rs74021724	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr15	70588080	70588081	chr15:70588081:G:A	rs150235207	G	A	G	Sox1.mouse_HMG_4	6	1	+	7.418846865630851	7.337266136203562	GGAATGGCTATGCA
chr15	70852626	70852627	chr15:70852627:C:A	rs79066658	C	A	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr15	71313045	71313046	chr15:71313046:G:A	rs28398466	G	A	A	Sox1.mouse_HMG_4	4	1	-	4.790531398840277	7.512548217667676	TGAACACTCATTAA
chr15	71375800	71375801	chr15:71375801:T:G	rs11632680	T	G	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr15	71397594	71397595	chr15:71397595:A:G	rs143840017	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr15	71440905	71440906	chr15:71440906:T:C	rs138134281	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.222130512052558	-2.6536386210717238	TGTATGGACATGCA
chr15	71458542	71458543	chr15:71458543:G:A	rs75503997	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.171713715753314	7.893730534580713	TGAACATTTATTGA
chr15	71458957	71458958	chr15:71458958:T:C	rs79057373	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr15	71596533	71596534	chr15:71596534:T:C	rs4777414	T	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr15	71647331	71647332	chr15:71647332:A:T	rs2062651	A	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr15	71744268	71744269	chr15:71744269:A:G	rs11072325	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr15	71792494	71792495	chr15:71792495:C:T	rs7402085	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr15	72493359	72493360	chr15:72493360:G:C	rs4777512	G	C	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr15	72604899	72604900	chr15:72604900:G:A	rs78538906	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr15	72752521	72752522	chr15:72752522:G:A	rs34149613	G	A	G	Sox1.mouse_HMG_4	1	1	+	5.668553773396211	-1.2402010059190103	CGAATGGGAAGTCA
chr15	72867531	72867532	chr15:72867532:G:A	rs987385	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr15	73284297	73284298	chr15:73284298:T:C	chr15:73284298:T:C	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr15	73284311	73284312	chr15:73284312:T:C	rs10438294	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.304029760827382	-2.571739372296898	TGATTATCCATGCA
chr15	73848896	73848897	chr15:73848897:T:C	rs4886693	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr15	73852611	73852612	chr15:73852612:C:T	rs60302365	C	T	C	Sox1.mouse_HMG_4	6	1	+	7.264249120605324	7.786462735845501	GGAATCCTCATTCA
chr15	73956814	73956815	chr15:73956815:G:C	rs56077126	G	C	G	Sox1.mouse_HMG_4	5	1	+	7.384849560523233	4.266913279522609	TGAATGTCCAGGCA
chr15	74214974	74214975	chr15:74214975:C:G	rs17386715	C	G	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	74648191	74648192	chr15:74648192:A:G	rs115644602	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr15	75020410	75020411	chr15:75020411:A:G	rs17337152	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr15	75452604	75452605	chr15:75452605:C:T	rs767149799	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr15	75551137	75551138	chr15:75551138:T:C	rs149713067	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr15	75626474	75626475	chr15:75626475:T:A	rs75484926	T	A	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr15	76006568	76006569	chr15:76006569:C:T	rs75365999	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr15	76177343	76177344	chr15:76177344:G:A	rs118054195	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr15	76253502	76253503	chr15:76253503:A:G	rs2456072	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr15	76386350	76386351	chr15:76386351:A:G	rs4886800	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr15	76617391	76617392	chr15:76617392:C:T	rs79334510	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr15	76643335	76643336	chr15:76643336:A:C	rs7181506	A	C	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr15	76929188	76929189	chr15:76929189:G:T	rs34748201	G	T	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	76930914	76930915	chr15:76930915:A:C	rs3829489	A	C	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr15	77456725	77456726	chr15:77456726:T:C	rs17471431	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr15	77528250	77528251	chr15:77528251:G:A	rs146406279	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr15	77567742	77567743	chr15:77567743:C:A	rs8040227	C	A	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr15	77574432	77574433	chr15:77574433:T:C	rs2667779	T	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr15	77825457	77825458	chr15:77825458:G:A	rs7176895	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr15	77987009	77987010	chr15:77987010:G:A	rs34540492	G	A	-	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr15	78069140	78069141	chr15:78069141:G:A	rs79560572	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr15	78252825	78252826	chr15:78252826:G:A	rs8031692	G	A	A	Sox1.mouse_HMG_4	5	1	+	9.924793934089314	10.36657315669465	TGACTGCACATTCA
chr15	78308225	78308226	chr15:78308226:G:A	rs4268717	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.199866674178027	4.0588353758508875	TGAATGACCCTGCA
chr15	78507467	78507468	chr15:78507468:G:T	rs78236050	G	T	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr15	78874276	78874277	chr15:78874277:A:C	rs59312571	A	C	A	Sox1.mouse_HMG_4	7	1	-	5.911235430589658	4.695564358080826	GGAATTCTAATGCA
chr15	78874282	78874283	chr15:78874283:C:T	rs149999612	C	T	C	Sox1.mouse_HMG_4	1	1	-	5.911235430589658	-0.9975193487255611	GGAATTCTAATGCA
chr15	78950396	78950397	chr15:78950397:C:T	rs2002832	C	T	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr15	78996139	78996140	chr15:78996140:C:T	rs7174178	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.300922112357778	0.39216733304255946	TGAATGTCCAGTCC
chr15	79633772	79633773	chr15:79633773:T:C	rs4779129	T	C	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr15	79922497	79922498	chr15:79922498:C:A	rs12904257	C	A	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr15	80723885	80723886	chr15:80723886:G:A	rs2759308	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	80953750	80953751	chr15:80953751:A:T	rs1012540	A	T	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr15	81183810	81183811	chr15:81183811:G:C	rs191403289	G	C	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr15	81304058	81304059	chr15:81304059:C:T	rs11634770	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr15	81311762	81311763	chr15:81311763:T:C	rs8041557	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr15	81311789	81311790	chr15:81311790:A:G	rs4778640	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	81342232	81342233	chr15:81342233:C:T	rs4622471	C	T	C	Sox1.mouse_HMG_4	7	1	-	6.184185711959356	7.135612699921183	TGAATACGTATCCA
chr15	81752146	81752147	chr15:81752147:C:G	rs8032149	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr15	81752189	81752190	chr15:81752190:A:G	rs16973117	A	G	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr15	81909426	81909427	chr15:81909427:C:T	rs76776613	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr15	81956024	81956025	chr15:81956025:A:G	rs17350792	A	G	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr15	82209271	82209272	chr15:82209272:C:T	rs74030944	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr15	82832969	82832970	chr15:82832970:T:C	rs11259952	T	C	C	Sox1.mouse_HMG_4	7	1	-	5.253309322374109	4.301882334412281	GGAACAGACATGCA
chr15	83194749	83194750	chr15:83194750:A:G	rs139777538	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr15	83306063	83306064	chr15:83306064:A:G	rs369775007	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr15	83722222	83722223	chr15:83722223:G:A	rs2562779	G	A	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr15	84034717	84034718	chr15:84034718:C:T	rs34672825	C	T	.	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr15	84759349	84759350	chr15:84759350:C:A	rs2115629	C	A	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr15	85408070	85408071	chr15:85408071:C:G	rs552552832	C	G	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr15	85443709	85443710	chr15:85443710:C:G	rs560188620	C	G	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr15	85521736	85521737	chr15:85521737:A:G	rs3743321	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr15	85584918	85584919	chr15:85584919:G:C	rs8035127	G	C	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr15	85600204	85600205	chr15:85600205:G:A	rs1551970	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr15	85616721	85616722	chr15:85616722:G:A	rs41388746	G	A	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr15	85795492	85795493	chr15:85795493:T:C	rs556813735	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr15	85803453	85803454	chr15:85803454:A:C	rs4842897	A	C	A	Sox1.mouse_HMG_4	10	1	-	7.027774738107058	3.662953850604052	GGAATCTTAATTCA
chr15	85905299	85905300	chr15:85905300:A:C	rs7181846	A	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr15	86336307	86336308	chr15:86336308:A:G	rs4887433	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	86376471	86376472	chr15:86376472:A:G	rs1431234	A	G	G	Sox1.mouse_HMG_4	3	1	+	6.576751049986189	-0.3106688598180092	GGAATTGAAATGCA
chr15	86586051	86586052	chr15:86586052:G:T	rs977174853	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr15	86590245	86590246	chr15:86590246:C:T	rs2881457	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr15	87069136	87069137	chr15:87069137:A:G	rs2043380	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	87504746	87504747	chr15:87504747:C:T	rs571454945	C	T	t	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr15	87777025	87777026	chr15:87777026:G:A	rs1109085	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr15	87777074	87777075	chr15:87777075:C:T	rs1109084	C	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr15	87954394	87954395	chr15:87954395:C:G	rs62019205	C	G	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr15	88036169	88036170	chr15:88036170:C:A	rs12440144	C	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr15	88090546	88090547	chr15:88090547:C:A	rs3784421	C	A	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr15	88215212	88215213	chr15:88215213:A:G	rs143867196	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr15	88215217	88215218	chr15:88215218:G:A	rs1042962894	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr15	88288367	88288368	chr15:88288368:A:G	rs12593926	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr15	88308865	88308866	chr15:88308866:C:T	rs1465935	C	T	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr15	88403339	88403340	chr15:88403340:T:C	rs8026297	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr15	88567603	88567604	chr15:88567604:C:T	rs11073790	C	T	C	Sox1.mouse_HMG_4	12	1	+	5.320318630049966	-1.5884361492652541	TGAACAAACAGTCC
chr15	88608030	88608031	chr15:88608031:T:A	rs2350271	T	A	t	Sox1.mouse_HMG_4	12	1	-	7.602039194445479	7.602039194445479	TGAATAATAATTAA
chr15	88611207	88611208	chr15:88611208:G:C	rs6496506	G	C	C	Sox1.mouse_HMG_4	12	1	-	5.235682707474286	-1.6730720718409346	TGAACCACCATGCA
chr15	88611220	88611221	chr15:88611221:A:G	rs1440127	A	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	88804145	88804146	chr15:88804146:G:A	rs530412849	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr15	88890569	88890570	chr15:88890570:C:T	rs55698343	C	T	c	Sox1.mouse_HMG_4	9	1	-	5.308291669584376	8.673112557087384	TGAACGGTCGTGCA
chr15	89036231	89036232	chr15:89036232:A:G	rs12593383	A	G	A	Sox1.mouse_HMG_4	0	1	-	11.05939908467862	7.157849337504021	TGAACTCTCATTCA
chr15	89258445	89258446	chr15:89258446:G:C	rs12900825	G	C	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr15	89446607	89446608	chr15:89446608:G:A	rs11073867	G	A	g	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr15	89499078	89499079	chr15:89499079:T:A	rs7165668	T	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr15	89769116	89769117	chr15:89769117:T:C	rs35752737	T	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr15	89828528	89828529	chr15:89828529:G:C	rs116126706	G	C	G	Sox1.mouse_HMG_4	12	1	-	3.267760251496327	-3.6409945278188935	TGAATGCCCTTTCC
chr15	90482848	90482849	chr15:90482849:T:A	rs77360072	T	A	T	Sox1.mouse_HMG_4	3	1	-	6.434615453962169	-0.4528044558420279	TGAAATTAAATTCA
chr15	90547789	90547790	chr15:90547790:A:G	rs7169230	A	G	a	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr15	90560253	90560254	chr15:90560254:G:T	rs116127934	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr15	90938524	90938525	chr15:90938525:G:A	rs115953269	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr15	90968029	90968030	chr15:90968030:A:G	rs12910825	A	G	G	Sox1.mouse_HMG_4	4	1	-	8.204395082426029	5.482378263598629	TCAATAGCCATTCA
chr15	91239028	91239029	chr15:91239029:T:A	rs977681	T	A	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr15	91286680	91286681	chr15:91286681:C:T	rs139048830	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr15	91561367	91561368	chr15:91561368:C:G	rs6496831	C	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr15	91706855	91706856	chr15:91706856:A:C	rs62009374	A	C	A	Sox1.mouse_HMG_4	11	1	-	6.812474392039826	3.2983202896335158	TGAATTGAAACTCA
chr15	91706881	91706882	chr15:91706882:G:A	rs77039405	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr15	91890260	91890261	chr15:91890261:G:A	rs11074023	G	A	A	Sox1.mouse_HMG_4	12	1	-	5.5260189401570345	-1.382735839158186	TGAACAATTATACA
chr15	91973381	91973382	chr15:91973382:A:G	rs8040046	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr15	91984454	91984455	chr15:91984455:T:A	rs78598598	T	A	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr15	92097702	92097703	chr15:92097703:C:T	rs16946382	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr15	92129622	92129623	chr15:92129623:A:G	rs1990230	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr15	92315520	92315521	chr15:92315521:A:G	rs16946715	A	G	G	Sox1.mouse_HMG_4	0	1	-	4.503386194429541	0.6018364472549405	TGAATCTTCATCCA
chr15	92522035	92522036	chr15:92522036:C:T	rs28536010	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr15	92525605	92525606	chr15:92525606:G:T	rs72749893	G	T	G	Sox1.mouse_HMG_4	6	1	+	4.378328944463361	3.9707828557600022	TGAATGGTTTTGCA
chr15	92565389	92565390	chr15:92565390:C:T	rs35424208	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr15	92583220	92583221	chr15:92583221:G:A	rs285713	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr15	92703178	92703179	chr15:92703179:T:C	rs2892381	T	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr15	92703205	92703206	chr15:92703206:A:G	rs879050	A	G	a	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr15	93170436	93170437	chr15:93170437:G:A	rs6497031	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr15	93209225	93209226	chr15:93209226:G:A	rs8036747	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr15	93239373	93239374	chr15:93239374:G:A	rs11633878	G	A	g	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr15	93281934	93281935	chr15:93281935:A:G	rs4777810	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr15	93438795	93438796	chr15:93438796:G:A	rs12906683	G	A	A	Sox1.mouse_HMG_4	11	1	+	5.664517683828248	2.2982568720469896	TGACTATGAATGCA
chr15	93570405	93570406	chr15:93570406:G:A	rs16948232	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr15	93632561	93632562	chr15:93632562:C:T	rs72759791	C	T	C	Sox1.mouse_HMG_4	6	1	-	8.012949010367153	7.931368280939864	TGAATCGACATGCA
chr15	93650106	93650107	chr15:93650107:A:G	rs76198399	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr15	93771323	93771324	chr15:93771324:A:G	rs34145612	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr15	93829314	93829315	chr15:93829315:C:T	rs28681166	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.570799926958102	4.4297686286309625	AGAACACACATTCA
chr15	93952791	93952792	chr15:93952792:A:G	rs34322758	A	G	A	Sox1.mouse_HMG_4	13	1	+	6.582119930634342	-0.3006251853436277	GGAATGGGCATGCA
chr15	94041887	94041888	chr15:94041888:A:G	rs8028914	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr15	94041890	94041891	chr15:94041891:G:C	rs74033505	G	C	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr15	94253263	94253264	chr15:94253264:A:G	rs8042367	A	G	G	Sox1.mouse_HMG_4	13	1	+	4.432028106219662	-2.450717009758307	TGAATATCCAGTTA
chr15	94395855	94395856	chr15:94395856:A:G	rs11631463	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr15	94685813	94685814	chr15:94685814:C:T	rs117561769	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr15	94894664	94894665	chr15:94894665:C:T	rs4984597	C	T	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr15	94931250	94931251	chr15:94931251:T:A	rs12441243	T	A	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr15	94970156	94970157	chr15:94970157:C:G	rs59345156	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr15	95134967	95134968	chr15:95134968:A:C	rs12916071	A	C	A	Sox1.mouse_HMG_4	7	1	-	6.816533016745873	5.600861944237041	TGAAAACTAATTCA
chr15	95281736	95281737	chr15:95281737:T:A	rs4380018	T	A	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr15	95305508	95305509	chr15:95305509:A:G	rs8043330	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr15	95305550	95305551	chr15:95305551:T:C	rs1444862	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr15	95681040	95681041	chr15:95681041:C:T	rs12906447	C	T	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr15	96011762	96011763	chr15:96011763:G:A	rs8034165	G	A	A	Sox1.mouse_HMG_4	12	1	-	4.226417324873749	-2.6823374544414715	GGATTTGTCATTCA
chr15	96564790	96564791	chr15:96564791:C:A	chr15:96564791:C:A	C	A	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr15	96897351	96897352	chr15:96897352:T:C	rs72757184	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr15	97654718	97654719	chr15:97654719:T:C	rs182407470	T	C	T	Sox1.mouse_HMG_4	0	1	+	8.010378967979985	4.108829220805385	TGAACAAAAATGCA
chr15	97889638	97889639	chr15:97889639:C:T	rs75032536	C	T	T	Sox1.mouse_HMG_4	12	1	+	15.269481971499143	8.360727192183923	TGAATAATCATTCA
chr15	97954650	97954651	chr15:97954651:T:C	rs923656	T	C	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr15	97954651	97954652	chr15:97954652:C:T	rs7180320	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr15	97954741	97954742	chr15:97954742:A:T	rs7180217	A	T	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr15	97976930	97976931	chr15:97976931:T:C	rs28459484	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr15	98009388	98009389	chr15:98009389:C:G	rs12901982	C	G	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr15	98376440	98376441	chr15:98376441:T:C	rs56386349	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr15	98664162	98664163	chr15:98664163:C:G	rs11247361	C	G	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr15	98729289	98729290	chr15:98729290:T:A	rs875686	T	A	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr15	98867686	98867687	chr15:98867687:C:T	rs77735962	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr15	98881761	98881762	chr15:98881762:T:C	rs8042797	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr15	98881763	98881764	chr15:98881764:T:C	rs8042803	T	C	C	Sox1.mouse_HMG_4	0	1	+	5.350826720062521	1.449276972887921	TGAACATTTGGTCA
chr15	98937321	98937322	chr15:98937322:C:T	rs939624	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr15	98949083	98949084	chr15:98949084:C:T	rs2715439	C	T	C	Sox1.mouse_HMG_4	6	1	+	4.960974850760165	5.483188466000342	TGAAGTCGAATTCA
chr15	98951978	98951979	chr15:98951979:C:T	rs7167580	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr15	99122928	99122929	chr15:99122929:T:C	rs12441651	T	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr15	99216751	99216752	chr15:99216752:A:G	rs2623184	A	G	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr15	99407387	99407388	chr15:99407388:A:C	rs12593500	A	C	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr15	99483093	99483094	chr15:99483094:G:A	rs7181817	G	A	G	Sox1.mouse_HMG_4	8	1	-	10.691906986686034	10.550875688358891	TGAACTAGCATTCA
chr15	99515043	99515044	chr15:99515044:C:T	rs79329596	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr15	99515044	99515045	chr15:99515045:A:G	rs73478500	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr15	99750540	99750541	chr15:99750541:T:C	rs56163661	T	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr15	99884652	99884653	chr15:99884653:T:C	rs11635895	T	C	C	Sox1.mouse_HMG_4	7	1	-	4.12003830907661	3.1686113211147813	GGAAGGAACATTCA
chr15	99905426	99905427	chr15:99905427:C:A	rs7180780	C	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr15	100090609	100090610	chr15:100090610:C:T	rs117695738	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr15	100249132	100249133	chr15:100249133:T:A	rs75256162	T	A	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr15	100291486	100291487	chr15:100291487:T:C	chr15:100291487:T:C	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr15	100687272	100687273	chr15:100687273:T:C	rs1808890	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr15	100714675	100714676	chr15:100714676:C:T	rs56093948	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr15	100939895	100939896	chr15:100939896:A:G	rs4075388	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr15	101044953	101044954	chr15:101044954:A:G	rs12592409	A	G	a	Sox1.mouse_HMG_4	0	1	-	4.200875860703743	0.29932611352914273	TGAAAGGACATTCC
chr15	101125019	101125020	chr15:101125020:G:A	rs79569865	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr15	101125045	101125046	chr15:101125046:C:A	rs114416293	C	A	C	Sox1.mouse_HMG_4	7	1	+	4.243877738862402	4.217546493500581	TGACCAGCAATTCC
chr15	101125055	101125056	chr15:101125056:C:T	rs12913337	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr15	101128058	101128059	chr15:101128059:G:A	rs144568717	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr15	101239059	101239060	chr15:101239060:T:C	rs117310790	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.1111720796231115	0.20962233244851203	TGACCCCCCATTCA
chr15	101239064	101239065	chr15:101239065:C:T	rs113381780	C	T	C	Sox1.mouse_HMG_4	5	1	+	4.1111720796231115	7.0310004897521985	TGACCCCCCATTCA
chr15	101243640	101243641	chr15:101243641:G:C	rs56056911	G	C	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr15	101338070	101338071	chr15:101338071:C:T	rs73493343	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.078430169591992	6.800446988419392	TGAACGGCAATGCC
chr15	101468935	101468936	chr15:101468936:G:A	rs4965877	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr15	101484928	101484929	chr15:101484929:T:C	rs4965390	T	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr16	167774	167775	chr16:167775:G:A	rs72763683	G	A	g	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr16	239694	239695	chr16:239695:T:C	rs2858010	T	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr16	349473	349474	chr16:349474:G:T	rs73488175	G	T	G	Sox1.mouse_HMG_4	1	1	+	4.760910440694463	-2.1478443386207555	TGTACTACCATTCA
chr16	377146	377147	chr16:377147:A:C	rs145211537	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	430095	430096	chr16:430096:T:C	rs1204509	T	C	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr16	455926	455927	chr16:455927:A:G	rs528173939	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	1238130	1238131	chr16:1238131:T:C	rs7203762	T	C	.	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	1310655	1310656	chr16:1310656:C:T	rs72775490	C	T	c	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr16	1668922	1668923	chr16:1668923:C:T	rs141933459	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr16	1696792	1696793	chr16:1696793:T:C	rs11863003	T	C	C	Sox1.mouse_HMG_4	3	1	-	3.99767096000929	-2.8897489497949094	CGAACAGGCATGCA
chr16	1993982	1993983	chr16:1993983:A:G	rs113088133	A	G	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr16	2280586	2280587	chr16:2280587:C:T	rs161428	C	T	C	Sox1.mouse_HMG_4	8	1	+	10.029348961914524	9.888317663587385	TGAATTCCCATGCA
chr16	2599720	2599721	chr16:2599721:G:A	rs147975625	G	A	g	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr16	2807623	2807624	chr16:2807624:A:C	rs8053254	A	C	A	Sox1.mouse_HMG_4	2	1	+	3.2172990431313346	-3.691455736183885	GGAATGGGCAGGCA
chr16	3105932	3105933	chr16:3105933:C:T	rs147656942	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr16	3283137	3283138	chr16:3283138:A:C	chr16:3283138:A:C	A	C	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr16	3389675	3389676	chr16:3389676:G:A	rs2074366	G	A	g	Sox1.mouse_HMG_4	5	1	+	4.105842961198957	4.547622183804295	TGAGCGCACATTCA
chr16	3690570	3690571	chr16:3690571:T:C	rs139644916	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.596084495583714	0.6945347484091144	TGAATCACCACTCA
chr16	3769064	3769065	chr16:3769065:T:A	rs129997	T	A	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr16	3923014	3923015	chr16:3923015:C:T	rs7195783	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr16	3923019	3923020	chr16:3923020:T:C	rs59787775	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr16	3947222	3947223	chr16:3947223:C:T	rs11646233	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr16	4096693	4096694	chr16:4096694:A:G	rs442611	A	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr16	4183462	4183463	chr16:4183463:T:G	rs569790750	T	G	T	Sox1.mouse_HMG_4	13	1	-	3.774022233207912	0.17594068263614648	TGACTTGCCATTGA
chr16	4209776	4209777	chr16:4209777:C:A	rs4786475	C	A	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr16	4460424	4460425	chr16:4460425:T:C	rs9929311	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr16	4465332	4465333	chr16:4465333:C:G	rs6500609	C	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr16	4552684	4552685	chr16:4552685:C:T	rs13334411	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr16	5034108	5034109	chr16:5034109:C:G	rs186565453	C	G	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr16	5106581	5106582	chr16:5106582:A:G	rs34832499	A	G	a	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr16	5226559	5226560	chr16:5226560:T:C	rs80092662	T	C	-	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr16	5365969	5365970	chr16:5365970:A:G	rs4786026	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr16	5481054	5481055	chr16:5481055:T:C	rs74889430	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr16	5543031	5543032	chr16:5543032:T:G	rs4643321	T	G	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	5582039	5582040	chr16:5582040:T:C	rs8063251	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr16	5640481	5640482	chr16:5640482:C:T	rs11648140	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr16	5641110	5641111	chr16:5641111:C:T	rs7342801	C	T	-	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr16	5684839	5684840	chr16:5684840:T:C	rs8056422	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr16	6031668	6031669	chr16:6031669:C:T	rs8053942	C	T	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr16	6031888	6031889	chr16:6031889:C:G	rs8054300	C	G	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr16	6031910	6031911	chr16:6031911:A:G	rs12447958	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.940455277397248	-1.9422898385807206	TGAACATATCTTCA
chr16	6127738	6127739	chr16:6127739:C:T	rs1386091	C	T	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr16	6484120	6484121	chr16:6484121:C:G	rs1420076	C	G	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr16	6548624	6548625	chr16:6548625:G:A	rs72762903	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr16	6820015	6820016	chr16:6820016:C:T	rs4786938	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr16	6864862	6864863	chr16:6864863:T:A	rs150050038	T	A	T	Sox1.mouse_HMG_4	13	1	-	7.818183863233693	0.9354387472557235	TGAGTATCCATTCA
chr16	6864885	6864886	chr16:6864886:G:C	rs184569413	G	C	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr16	7035748	7035749	chr16:7035749:G:C	rs76611178	G	C	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr16	7206752	7206753	chr16:7206753:G:A	rs61461936	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr16	7349698	7349699	chr16:7349699:A:T	rs73565823	A	T	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr16	7625492	7625493	chr16:7625493:T:C	rs7200228	T	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	7625500	7625501	chr16:7625501:C:G	rs982332	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr16	7702724	7702725	chr16:7702725:A:G	rs3785193	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr16	7703758	7703759	chr16:7703759:T:G	rs12448737	T	G	T	Sox1.mouse_HMG_4	3	1	-	10.398625498256857	6.60813974251562	TGAATAAGTATGCA
chr16	7755841	7755842	chr16:7755842:T:G	rs114248478	T	G	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr16	8096630	8096631	chr16:8096631:T:C	rs7205888	T	C	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	8146835	8146836	chr16:8146836:C:G	rs75942350	C	G	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr16	8407592	8407593	chr16:8407593:A:C	rs12443757	A	C	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr16	8531270	8531271	chr16:8531271:G:A	rs12448624	G	A	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr16	8714494	8714495	chr16:8714495:T:A	rs6497519	T	A	T	Sox1.mouse_HMG_4	10	1	-	4.326899429282195	11.202668562406476	TGAACTTCTAATCA
chr16	8741242	8741243	chr16:8741243:G:A	rs77543472	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr16	8809012	8809013	chr16:8809013:G:C	rs1997381	G	C	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr16	8912066	8912067	chr16:8912067:T:C	rs79430602	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr16	9017358	9017359	chr16:9017359:C:A	rs17652144	C	A	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr16	9107333	9107334	chr16:9107334:T:A	rs4247103	T	A	A	Sox1.mouse_HMG_4	13	1	-	7.419375839325764	0.5366307233477947	TGAATAGAAATTAA
chr16	9262628	9262629	chr16:9262629:A:T	rs76548959	A	T	A	Sox1.mouse_HMG_4	9	1	+	4.681174714373246	-2.1945944187510342	GGAACTAACAGTCA
chr16	9545678	9545679	chr16:9545679:G:C	rs16965549	G	C	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr16	9949234	9949235	chr16:9949235:A:C	rs9923995	A	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr16	10048525	10048526	chr16:10048526:G:A	rs28528871	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr16	10283907	10283908	chr16:10283908:G:A	rs148926706	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	10283941	10283942	chr16:10283942:C:T	rs67717422	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr16	10642336	10642337	chr16:10642337:G:A	rs2719631	G	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	10735222	10735223	chr16:10735223:G:A	rs4780990	G	A	G	Sox1.mouse_HMG_4	4	1	-	4.96678652275907	7.6888033415864685	TGAACATCTTTTCA
chr16	10856290	10856291	chr16:10856291:A:T	rs12929159	A	T	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr16	10959222	10959223	chr16:10959223:A:G	rs79479146	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr16	10959228	10959229	chr16:10959229:A:G	rs16957836	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr16	11009302	11009303	chr16:11009303:G:A	rs9926615	G	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr16	11081112	11081113	chr16:11081113:C:T	rs75912537	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr16	11355486	11355487	chr16:11355487:T:C	rs77205447	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr16	11366081	11366082	chr16:11366082:C:T	rs11646972	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.79684899372267	7.6558176953955295	TCAATATCCATTCA
chr16	11411119	11411120	chr16:11411120:G:A	rs572909005	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr16	11434694	11434695	chr16:11434695:T:C	rs11074988	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	11450967	11450968	chr16:11450968:G:A	rs6498194	G	A	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr16	11501770	11501771	chr16:11501771:T:C	rs919723867	T	C	T	Sox1.mouse_HMG_4	9	1	-	6.218503882170058	2.853682994667052	GGAATTAGCATTCC
chr16	11510413	11510414	chr16:11510414:G:T	rs8049448	G	T	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr16	11565398	11565399	chr16:11565399:T:G	rs7187625	T	G	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr16	11613868	11613869	chr16:11613869:G:A	rs143075200	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr16	11613872	11613873	chr16:11613873:G:A	rs373708501	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr16	11613879	11613880	chr16:11613880:T:C	rs148205564	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	11645192	11645193	chr16:11645193:G:A	rs67850232	G	A	g	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr16	11651028	11651029	chr16:11651029:G:A	rs8057917	G	A	a	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr16	11698657	11698658	chr16:11698658:C:G	rs11641208	C	G	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr16	11698657	11698658	chr16:11698658:C:T	chr16:11698658:C:T	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr16	11834161	11834162	chr16:11834162:T:C	rs2192645	T	C	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr16	11836445	11836446	chr16:11836446:G:A	rs139093183	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr16	11836479	11836480	chr16:11836480:C:A	rs3743590	C	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	12048069	12048070	chr16:12048070:T:C	rs7202235	T	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr16	12064042	12064043	chr16:12064043:T:C	rs10500381	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr16	12079015	12079016	chr16:12079016:C:A	rs4352067	C	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	12152919	12152920	chr16:12152920:G:A	rs4781187	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr16	12168405	12168406	chr16:12168406:A:G	rs12444353	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	12178540	12178541	chr16:12178541:G:A	rs148668232	G	A	A	Sox1.mouse_HMG_4	10	1	+	4.261147368990446	0.7501991233691718	TGAATGTTCCGTCA
chr16	12398295	12398296	chr16:12398296:C:G	rs8055044	C	G	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr16	12398315	12398316	chr16:12398316:C:G	rs8055058	C	G	C	Sox1.mouse_HMG_4	10	1	-	3.842908028988722	0.3319597833674479	TGAAAAAGCAGTCA
chr16	12420717	12420718	chr16:12420718:C:G	rs11644239	C	G	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr16	12463178	12463179	chr16:12463179:G:A	rs74776832	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr16	12463195	12463196	chr16:12463196:A:G	rs74009082	A	G	G	Sox1.mouse_HMG_4	10	1	-	3.9528878517922976	-2.922881281331983	TGAGTAGCAATGCA
chr16	12628792	12628793	chr16:12628793:A:G	rs4781303	A	G	G	Sox1.mouse_HMG_4	4	1	+	8.423399989000561	8.423399989000561	TGAAAAATCATTCA
chr16	12630448	12630449	chr16:12630449:A:G	rs4781309	A	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr16	12630457	12630458	chr16:12630458:C:T	rs4781310	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr16	12681549	12681550	chr16:12681550:T:C	rs1713466	T	C	C	Sox1.mouse_HMG_4	2	1	-	4.774546765869047	-2.134208013446173	TGAATCGTTAATCA
chr16	13100553	13100554	chr16:13100554:T:C	rs16961126	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	13390964	13390965	chr16:13390965:A:G	rs6498410	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr16	13643508	13643509	chr16:13643509:C:T	rs7498387	C	T	T	Sox1.mouse_HMG_4	1	1	-	3.712482746696068	-3.196272032619153	TGCATAGGCATGCA
chr16	13643509	13643510	chr16:13643510:A:G	rs7498490	A	G	G	Sox1.mouse_HMG_4	0	1	-	3.712482746696068	-0.18906700047853042	TGCATAGGCATGCA
chr16	13672163	13672164	chr16:13672164:A:C	rs8060156	A	C	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr16	13780338	13780339	chr16:13780339:C:G	rs11865444	C	G	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr16	14244664	14244665	chr16:14244665:C:T	rs74788104	C	T	T	Sox1.mouse_HMG_4	8	1	+	4.833997334768897	4.692966036441757	TGAATCATCTTTCA
chr16	14244673	14244674	chr16:14244674:A:C	rs73518945	A	C	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	14303908	14303909	chr16:14303909:C:T	rs182911803	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr16	14377562	14377563	chr16:14377563:G:A	rs1000175	G	A	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr16	15572422	15572423	chr16:15572423:T:C	rs9924674	T	C	T	Sox1.mouse_HMG_4	11	1	+	4.6129679326833815	-2.2674469815041878	TGAATAGACTTTCC
chr16	15576946	15576947	chr16:15576947:C:G	rs73501206	C	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	15643528	15643529	chr16:15643529:C:T	rs79063947	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr16	15643557	15643558	chr16:15643558:C:A	rs187630586	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr16	15815183	15815184	chr16:15815184:T:C	rs62030626	T	C	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr16	15901303	15901304	chr16:15901304:A:G	rs77831480	A	G	a	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr16	15901335	15901336	chr16:15901336:G:A	rs79794507	G	A	a	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	16539456	16539457	chr16:16539457:T:C	rs191365497	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.832856155877154	4.110839337049756	TGTATGCCCATTCA
chr16	17252939	17252940	chr16:17252940:T:C	rs4782018	T	C	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr16	17335373	17335374	chr16:17335374:G:A	rs62030296	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr16	17462542	17462543	chr16:17462543:T:C	rs112521208	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr16	18559669	18559670	chr16:18559670:T:C	rs62044030	T	C	.	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr16	18866797	18866798	chr16:18866798:T:C	rs11648912	T	C	-	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr16	18989092	18989093	chr16:18989093:T:C	rs12448116	T	C	t	Sox1.mouse_HMG_4	10	1	+	5.285775899181452	-1.5899932339428302	TGAACAACTATTCT
chr16	19091632	19091633	chr16:19091633:T:A	rs4307934	T	A	T	Sox1.mouse_HMG_4	3	1	-	7.313638849499632	0.4262189396954341	GGAACTACAATTCA
chr16	19106312	19106313	chr16:19106313:C:G	rs7202362	C	G	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr16	19223448	19223449	chr16:19223449:G:A	rs139052424	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr16	19288662	19288663	chr16:19288663:A:G	rs78095352	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr16	19540393	19540394	chr16:19540394:A:G	rs2285660	A	G	A	Sox1.mouse_HMG_4	5	1	+	7.575338791274156	7.133559568668817	TGAATATATAGTCC
chr16	19556392	19556393	chr16:19556393:A:T	rs116729838	A	T	A	Sox1.mouse_HMG_4	10	1	-	3.771700167851077	-3.1040689652732034	TGGACTCCTATTCA
chr16	20510728	20510729	chr16:20510729:G:A	rs9924303	G	A	.	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr16	21121342	21121343	chr16:21121343:G:A	rs74898906	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr16	21156642	21156643	chr16:21156643:G:A	rs8050941	G	A	A	Sox1.mouse_HMG_4	6	1	+	8.76746342478042	8.68588269535313	GGAACAGACATTCA
chr16	21160941	21160942	chr16:21160942:G:A	rs72780898	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr16	21280095	21280096	chr16:21280096:T:G	rs1012305937	T	G	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr16	21281870	21281871	chr16:21281871:T:G	rs76590924	T	G	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr16	21519200	21519201	chr16:21519201:A:C	rs642593	A	C	.	Sox1.mouse_HMG_4	2	1	+	4.522321703429928	-2.386433075885291	CGAACCTCCATTCA
chr16	22602655	22602656	chr16:22602656:C:T	rs62046067	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr16	22623485	22623486	chr16:22623486:T:G	rs568678760	T	G	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr16	22635474	22635475	chr16:22635475:T:A	rs294234	T	A	T	Sox1.mouse_HMG_4	13	1	-	5.060161939404479	-1.8225831765734908	TGACCAGACATGCA
chr16	22943622	22943623	chr16:22943623:G:C	rs1354384	G	C	G	Sox1.mouse_HMG_4	6	1	+	4.098978951831271	3.169219247887737	CAAATGGTCATTCA
chr16	23060834	23060835	chr16:23060835:A:T	chr16:23060835:A:T	A	T	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr16	23060847	23060848	chr16:23060848:A:C	rs761131968	A	C	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr16	23135040	23135041	chr16:23135041:G:T	rs75869183	G	T	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	23145062	23145063	chr16:23145063:C:A	rs114552260	C	A	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr16	23145063	23145064	chr16:23145064:C:A	rs115431274	C	A	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr16	23223260	23223261	chr16:23223261:G:C	rs35404819	G	C	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr16	23275157	23275158	chr16:23275158:C:A	rs74012859	C	A	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr16	23751541	23751542	chr16:23751542:T:G	rs113962298	T	G	t	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr16	23855247	23855248	chr16:23855248:G:A	rs76508372	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr16	23951182	23951183	chr16:23951183:G:A	rs196001	G	A	G	Sox1.mouse_HMG_4	1	1	+	6.241979637446011	-0.6667751418692114	CGAATGCCCATTCC
chr16	23951194	23951195	chr16:23951195:C:T	rs147073942	C	T	C	Sox1.mouse_HMG_4	13	1	+	6.241979637446011	2.9573160720398075	CGAATGCCCATTCC
chr16	23951207	23951208	chr16:23951208:G:A	rs1349782003	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr16	24203837	24203838	chr16:24203838:G:A	rs80100525	G	A	G	Sox1.mouse_HMG_4	11	1	+	4.052842102030327	0.6865812902490689	GGAACGGAAATGCA
chr16	24826558	24826559	chr16:24826559:A:G	rs8058453	A	G	G	Sox1.mouse_HMG_4	5	1	-	4.703468491560442	1.7836400814313549	TGAACTGATATCCA
chr16	25007963	25007964	chr16:25007964:A:C	rs4787665	A	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr16	25770237	25770238	chr16:25770238:A:G	rs17704277	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr16	26087283	26087284	chr16:26087284:G:A	rs11074748	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.556389783495116	7.078603398735294	TGAAATCCTATTCA
chr16	26130323	26130324	chr16:26130324:G:C	rs9934125	G	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr16	26339114	26339115	chr16:26339115:G:C	rs2113319	G	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	26414010	26414011	chr16:26414011:G:T	rs114266798	G	T	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr16	26526893	26526894	chr16:26526894:G:A	rs982684	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr16	26827582	26827583	chr16:26827583:C:T	rs161170	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr16	27027268	27027269	chr16:27027269:G:A	rs11647423	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.240706524098736	-2.6680482552164833	TGAACGCTTCTTCA
chr16	27255729	27255730	chr16:27255730:G:A	rs12445023	G	A	G	Sox1.mouse_HMG_4	0	1	-	4.166197731924192	8.067747479098792	CGAATATTCTTTCA
chr16	27266103	27266104	chr16:27266104:G:A	rs7195953	G	A	G	Sox1.mouse_HMG_4	5	1	-	4.359617975729919	7.279446385859005	TGAATCACCATGCC
chr16	27460542	27460543	chr16:27460543:T:C	rs12922976	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	27628599	27628600	chr16:27628600:G:T	rs537685752	G	T	g	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr16	27759491	27759492	chr16:27759492:C:T	rs6498034	C	T	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr16	27823360	27823361	chr16:27823361:C:T	rs11645119	C	T	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr16	27844317	27844318	chr16:27844318:T:C	rs772958	T	C	t	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr16	28519965	28519966	chr16:28519966:A:G	rs4787458	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr16	29744779	29744780	chr16:29744780:G:A	rs200439714	G	A	G	Sox1.mouse_HMG_4	0	1	+	4.451215549315585	1.1843117554368032	GGAACAGGCGTTCA
chr16	31715124	31715125	chr16:31715125:G:A	rs4889551	G	A	g	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr16	33741834	33741835	chr16:33741835:C:G	rs2698634	C	G	.	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr16	34132921	34132922	chr16:34132922:C:T	rs372431	C	T	.	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	34572030	34572031	chr16:34572031:T:C	chr16:34572031:T:C	T	C	.	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr16	34572036	34572037	chr16:34572037:C:A	chr16:34572037:C:A	C	A	.	Sox1.mouse_HMG_4	5	1	+	4.801011688577959	8.360727192183923	TGAATCATCATTGA
chr16	34572056	34572057	chr16:34572057:T:C	chr16:34572057:T:C	T	C	.	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr16	38031532	38031533	chr16:38031533:T:C	rs1446152570	T	C	.	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr16	46919174	46919175	chr16:46919175:C:T	rs941696867	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr16	47977891	47977892	chr16:47977892:T:A	chr16:47977892:T:A	T	A	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr16	47999691	47999692	chr16:47999692:A:T	rs12103017	A	T	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr16	48173919	48173920	chr16:48173920:C:G	rs62058523	C	G	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr16	48353724	48353725	chr16:48353725:G:T	rs773602604	G	T	G	Sox1.mouse_HMG_4	1	1	+	6.641402685834733	-0.2673520934804865	TGAATTCACTTTCA
chr16	48524820	48524821	chr16:48524821:T:C	rs111836611	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.080071019220623	-2.8073488905835724	CGAAAGATCATTCA
chr16	48524823	48524824	chr16:48524824:G:A	rs75697223	G	A	G	Sox1.mouse_HMG_4	0	1	-	4.080071019220623	7.981620766395223	CGAAAGATCATTCA
chr16	48555380	48555381	chr16:48555381:T:A	rs111569147	T	A	T	Sox1.mouse_HMG_4	13	1	-	3.881770395825235	-3.000974720152734	GGAACGCACATGCA
chr16	48797103	48797104	chr16:48797104:C:T	rs2058816	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr16	48824572	48824573	chr16:48824573:A:C	rs1014594274	A	C	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr16	48902170	48902171	chr16:48902171:G:A	rs184863733	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr16	48918658	48918659	chr16:48918659:G:C	rs56367669	G	C	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr16	48964340	48964341	chr16:48964341:G:A	rs4785272	G	A	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr16	49455947	49455948	chr16:49455948:A:G	rs7186548	A	G	G	Sox1.mouse_HMG_4	0	1	-	4.166881027987089	0.26533128081248836	TTAATGACCATGCA
chr16	49489828	49489829	chr16:49489829:A:G	rs7191767	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	49595399	49595400	chr16:49595400:C:T	rs59995108	C	T	T	Sox1.mouse_HMG_4	4	1	+	6.960599067061587	9.682615885888984	TGAACTTAAATTCC
chr16	49595413	49595414	chr16:49595414:C:A	rs56154385	C	A	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr16	49770017	49770018	chr16:49770018:C:T	rs11865138	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr16	50178655	50178656	chr16:50178656:T:C	rs9934562	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.899305656602766	-1.9834394593752034	TGAACGTTCATCCA
chr16	50264260	50264261	chr16:50264261:T:C	rs142406716	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr16	50395419	50395420	chr16:50395420:G:A	rs16948451	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr16	50459518	50459519	chr16:50459519:A:G	rs4785426	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr16	50712382	50712383	chr16:50712383:A:C	rs72796353	A	C	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr16	50817664	50817665	chr16:50817665:G:C	rs12445012	G	C	G	Sox1.mouse_HMG_4	12	1	-	7.644688259718206	0.735933480402986	TGAATCTTTATTCC
chr16	50996330	50996331	chr16:50996331:G:A	rs73590301	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr16	51024758	51024759	chr16:51024759:C:T	rs141396725	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr16	51156327	51156328	chr16:51156328:C:T	rs12927974	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr16	51523834	51523835	chr16:51523835:G:T	rs8182100	G	T	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr16	51814470	51814471	chr16:51814471:G:A	rs4783960	G	A	g	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr16	51927432	51927433	chr16:51927433:C:A	rs12149211	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr16	52565144	52565145	chr16:52565145:A:C	rs9937101	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	52853021	52853022	chr16:52853022:C:T	rs11641421	C	T	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr16	53312906	53312907	chr16:53312907:T:A	rs12598505	T	A	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr16	54161776	54161777	chr16:54161777:G:A	rs113905985	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr16	54331434	54331435	chr16:54331435:G:T	rs11076029	G	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr16	54577006	54577007	chr16:54577007:A:G	rs537645538	A	G	a	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr16	54822758	54822759	chr16:54822759:C:T	rs4435250	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr16	54873227	54873228	chr16:54873228:A:C	rs59879365	A	C	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr16	54957538	54957539	chr16:54957539:G:A	rs773337680	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr16	54957552	54957553	chr16:54957553:A:T	rs980912306	A	T	A	Sox1.mouse_HMG_4	10	1	-	7.400467906715114	0.5246987735908328	TGAAAAAAAATTCA
chr16	55030299	55030300	chr16:55030300:C:G	rs13338979	C	G	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr16	55034254	55034255	chr16:55034255:T:G	rs60791151	T	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	55056022	55056023	chr16:55056023:C:T	rs7206636	C	T	T	Sox1.mouse_HMG_4	2	1	+	4.608660250592427	4.608660250592427	TGCATAACCATGCA
chr16	55226132	55226133	chr16:55226133:C:T	rs7189117	C	T	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr16	55444531	55444532	chr16:55444532:T:C	rs2576546	T	C	T	Sox1.mouse_HMG_4	6	1	+	4.467203249542147	3.9449896343019697	GGAATATTCAGGCA
chr16	55467425	55467426	chr16:55467426:G:A	rs12373036	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.314896689445787	4.233315960018497	TGAACGGCACTTCA
chr16	55498846	55498847	chr16:55498847:A:T	rs243837	A	T	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr16	55623770	55623771	chr16:55623771:T:C	rs1502015	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr16	55768694	55768695	chr16:55768695:C:G	rs28417034	C	G	g	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr16	55825006	55825007	chr16:55825007:C:G	rs139869376	C	G	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr16	56121805	56121806	chr16:56121806:C:T	rs7202833	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr16	56781287	56781288	chr16:56781288:A:G	rs1865833	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	56813471	56813472	chr16:56813472:G:A	rs77199942	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr16	56849171	56849172	chr16:56849172:T:C	rs77330486	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.226636849102379	0.35086771597809796	TTAATAGGCATTCA
chr16	56869651	56869652	chr16:56869652:C:G	rs115164192	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr16	57111589	57111590	chr16:57111590:G:A	rs72777113	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr16	57148355	57148356	chr16:57148356:A:G	rs78023591	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	57273660	57273661	chr16:57273661:T:C	rs11643781	T	C	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr16	57273695	57273696	chr16:57273696:A:G	rs11642750	A	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr16	57842346	57842347	chr16:57842347:C:T	rs1181361319	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr16	57843514	57843515	chr16:57843515:A:G	rs59971701	A	G	A	Sox1.mouse_HMG_4	10	1	-	3.7212192398949036	-3.154549893229377	TGAGTGTCTATGCA
chr16	57877188	57877189	chr16:57877189:A:G	rs165996	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr16	57886172	57886173	chr16:57886173:T:C	rs142501479	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr16	58133401	58133402	chr16:58133402:C:T	rs4784898	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr16	58331715	58331716	chr16:58331716:A:G	rs76649222	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	58366843	58366844	chr16:58366844:C:T	rs62040459	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr16	58577289	58577290	chr16:58577290:T:G	rs570122699	T	G	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr16	58600641	58600642	chr16:58600642:G:A	rs12925777	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	58730950	58730951	chr16:58730951:C:A	rs73550818	C	A	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr16	58743411	58743412	chr16:58743412:T:C	rs1646269	T	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	58934915	58934916	chr16:58934916:G:A	rs56070693	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr16	58983606	58983607	chr16:58983607:A:G	rs9924622	A	G	a	Sox1.mouse_HMG_4	4	1	-	7.694375175998133	4.972358357170735	TGAATTGTTTTTCA
chr16	59540840	59540841	chr16:59540841:A:C	chr16:59540841:A:C	A	C	A	Sox1.mouse_HMG_4	7	1	-	5.668490162762425	4.452819090253594	TGAACAATCAGGCA
chr16	59860094	59860095	chr16:59860095:G:A	rs2197463	G	A	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr16	59880806	59880807	chr16:59880807:G:T	rs11865290	G	T	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr16	59905774	59905775	chr16:59905775:C:G	rs990536403	C	G	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr16	60170298	60170299	chr16:60170299:T:C	rs1364196	T	C	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr16	60170327	60170328	chr16:60170328:C:T	rs35247302	C	T	C	Sox1.mouse_HMG_4	1	1	-	6.9213749550057555	0.012620175690533975	CGAACTTTAATTCA
chr16	60189228	60189229	chr16:60189229:T:A	rs1411503023	T	A	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	60811279	60811280	chr16:60811280:A:T	rs16962597	A	T	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr16	60995867	60995868	chr16:60995868:T:G	rs1364350	T	G	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr16	61027789	61027790	chr16:61027790:G:A	rs8047093	G	A	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr16	61088878	61088879	chr16:61088879:T:A	rs116941738	T	A	T	Sox1.mouse_HMG_4	4	1	+	4.813132184215011	-2.0329497982835685	TGAATAGTTATGCT
chr16	61106624	61106625	chr16:61106625:A:C	rs11860279	A	C	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr16	62276859	62276860	chr16:62276860:A:G	rs11864889	A	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr16	62276866	62276867	chr16:62276867:G:C	rs11864997	G	C	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr16	62336695	62336696	chr16:62336696:C:T	rs11646720	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr16	62642364	62642365	chr16:62642365:C:T	rs536802003	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr16	62971070	62971071	chr16:62971071:G:A	rs30889	G	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	63666603	63666604	chr16:63666604:C:T	rs2018916	C	T	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr16	63891032	63891033	chr16:63891033:C:A	rs12444654	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr16	64474858	64474859	chr16:64474859:G:A	rs72784827	G	A	G	Sox1.mouse_HMG_4	7	1	+	4.126853730977525	5.078280718939353	TGAACATGCAGGCA
chr16	64590584	64590585	chr16:64590585:C:T	rs13336965	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr16	64714358	64714359	chr16:64714359:G:A	rs11645397	G	A	g	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr16	64724790	64724791	chr16:64724791:C:T	rs231048	C	T	C	Sox1.mouse_HMG_4	12	1	+	6.805819991210709	-0.10293478810451195	TTAATTGCAATTCA
chr16	64968649	64968650	chr16:64968650:C:T	rs780853993	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr16	64996217	64996218	chr16:64996218:G:A	rs58004552	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr16	65049654	65049655	chr16:65049655:T:A	rs117733880	T	A	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	65389101	65389102	chr16:65389102:G:A	rs952842	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr16	65952482	65952483	chr16:65952483:T:C	rs77086391	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr16	66002202	66002203	chr16:66002203:G:A	rs8053531	G	A	A	Sox1.mouse_HMG_4	9	1	-	7.1665897263462925	7.1665897263462925	TGAATACCTCTTCA
chr16	66161444	66161445	chr16:66161445:T:A	rs2526719	T	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	66182834	66182835	chr16:66182835:C:T	rs113959873	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr16	66225815	66225816	chr16:66225816:G:A	rs8055223	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	66231356	66231357	chr16:66231357:G:T	rs62037166	G	T	G	Sox1.mouse_HMG_4	8	1	-	5.357257626745284	4.598569629006841	AGAACATTCATTCA
chr16	66328333	66328334	chr16:66328334:T:C	rs116906869	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr16	66343005	66343006	chr16:66343006:T:C	rs1108978	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr16	66343008	66343009	chr16:66343009:G:A	rs1108979	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr16	66344799	66344800	chr16:66344800:T:C	rs77715854	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	66391176	66391177	chr16:66391177:C:T	rs55951938	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr16	66441711	66441712	chr16:66441712:A:G	rs11645280	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr16	66508181	66508182	chr16:66508182:G:A	rs74451221	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr16	67279901	67279902	chr16:67279902:G:A	rs141261466	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr16	67456601	67456602	chr16:67456602:G:A	rs573274661	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	67456616	67456617	chr16:67456617:C:T	rs540641596	C	T	C	Sox1.mouse_HMG_4	7	1	-	3.808575097299732	4.760002085261561	TGAATAAGCAGACA
chr16	67486729	67486730	chr16:67486730:A:T	rs76226513	A	T	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr16	68023653	68023654	chr16:68023654:A:G	rs761501908	A	G	A	Sox1.mouse_HMG_4	3	1	-	5.3340798835914764	8.431014037654435	TGATCATTCATTCA
chr16	68252844	68252845	chr16:68252845:G:C	rs55897859	G	C	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr16	68312618	68312619	chr16:68312619:A:G	rs183160434	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	68350135	68350136	chr16:68350136:T:C	rs11075672	T	C	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr16	68426311	68426312	chr16:68426312:T:C	rs1125848	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	68524563	68524564	chr16:68524564:G:A	rs4783649	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr16	69321602	69321603	chr16:69321603:C:T	rs11647864	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr16	69368193	69368194	chr16:69368194:C:T	rs985489578	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr16	69425050	69425051	chr16:69425051:G:A	rs773077348	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr16	69933828	69933829	chr16:69933829:G:A	rs8047818	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	70141699	70141700	chr16:70141700:C:T	rs62050973	C	T	c	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	71203591	71203592	chr16:71203592:T:C	rs144727714	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr16	71370876	71370877	chr16:71370877:C:T	rs6499513	C	T	c	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr16	71709696	71709697	chr16:71709697:G:A	rs113706607	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr16	71880713	71880714	chr16:71880714:C:G	rs12447045	C	G	C	Sox1.mouse_HMG_4	12	1	+	6.775195089440256	-0.13355968987496447	TGAGTACTAATTCA
chr16	72023382	72023383	chr16:72023383:A:G	rs2288002	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.514346544549804	-2.394408234765416	GGAATCATCATTCC
chr16	72820407	72820408	chr16:72820408:C:G	rs2266943	C	G	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr16	73163670	73163671	chr16:73163671:C:T	rs59029059	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr16	73304946	73304947	chr16:73304947:T:C	rs16971692	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.382307722563304	0.4995626065853349	AGAATAAAAATTCA
chr16	73339732	73339733	chr16:73339733:T:G	rs11866632	T	G	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	73351641	73351642	chr16:73351642:C:T	rs116574245	C	T	C	Sox1.mouse_HMG_4	12	1	+	6.984013337224676	0.07525855790945535	TGAATATCAAGTCC
chr16	73471299	73471300	chr16:73471300:T:C	rs34149712	T	C	C	Sox1.mouse_HMG_4	10	1	+	4.188215897498112	-2.6875532356261687	TGATTGACCATGCA
chr16	73689630	73689631	chr16:73689631:T:C	rs899883	T	C	t	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr16	73743879	73743880	chr16:73743880:A:G	rs419318	A	G	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	73743890	73743891	chr16:73743891:A:C	rs402799	A	C	A	Sox1.mouse_HMG_4	11	1	-	6.608417039643795	3.0942629372374846	TGTATTCACATTCA
chr16	73743913	73743914	chr16:73743914:T:C	rs388379	T	C	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr16	74060598	74060599	chr16:74060599:G:C	rs9928370	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr16	74439004	74439005	chr16:74439005:G:A	rs546007189	G	A	.	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr16	74778817	74778818	chr16:74778818:A:C	chr16:74778818:A:C	A	C	A	Sox1.mouse_HMG_4	10	1	-	6.975631840508207	3.6108109530052	TGACTACTTATGCA
chr16	74778817	74778818	chr16:74778818:A:G	rs60293445	A	G	A	Sox1.mouse_HMG_4	10	1	-	6.975631840508207	0.09986270738392533	TGACTACTTATGCA
chr16	74892906	74892907	chr16:74892907:A:G	rs10514386	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr16	75062049	75062050	chr16:75062050:A:G	chr16:75062050:A:G	A	G	A	Sox1.mouse_HMG_4	2	1	+	8.018124606126417	1.1093698268111958	TGAAAAAATATTCA
chr16	75241332	75241333	chr16:75241333:G:A	rs36097424	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr16	75306359	75306360	chr16:75306360:C:T	rs139062537	C	T	c	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr16	75326389	75326390	chr16:75326390:T:A	rs72804154	T	A	T	Sox1.mouse_HMG_4	11	1	+	4.1477273301646695	-2.7326875840228997	TCAATACTCAGTCA
chr16	75398435	75398436	chr16:75398436:G:T	rs4888406	G	T	G	Sox1.mouse_HMG_4	8	1	-	6.895528952693795	6.1368409549553515	TGAAGGCCCATTCA
chr16	75453859	75453860	chr16:75453860:T:C	rs8046416	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr16	75589094	75589095	chr16:75589095:A:C	rs8051241	A	C	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr16	75618762	75618763	chr16:75618763:G:A	rs74027443	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr16	75761705	75761706	chr16:75761706:A:G	rs76412696	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr16	76194570	76194571	chr16:76194571:G:A	rs142924036	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr16	76194586	76194587	chr16:76194587:A:G	rs115342184	A	G	a	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr16	76195018	76195019	chr16:76195019:T:C	rs75824327	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr16	76195045	76195046	chr16:76195046:C:T	rs76753743	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr16	76276601	76276602	chr16:76276602:T:C	rs13380633	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr16	76462233	76462234	chr16:76462234:C:T	rs34782687	C	T	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	76532182	76532183	chr16:76532183:T:C	rs116177931	T	C	C	Sox1.mouse_HMG_4	6	1	-	4.675095182623836	4.756675912051126	TGAACAACACTTCA
chr16	76880799	76880800	chr16:76880800:G:C	rs78134089	G	C	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr16	76959526	76959527	chr16:76959527:C:T	rs4430756	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr16	77308106	77308107	chr16:77308107:T:A	rs1045280515	T	A	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr16	77611563	77611564	chr16:77611564:A:G	rs280871	A	G	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	77800332	77800333	chr16:77800333:A:G	rs76468629	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr16	77840330	77840331	chr16:77840331:G:A	rs1125270	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	77949590	77949591	chr16:77949591:T:G	rs371422	T	G	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr16	77993703	77993704	chr16:77993704:A:C	rs390057	A	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr16	78002293	78002294	chr16:78002294:T:C	rs4888718	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	78003995	78003996	chr16:78003996:C:A	rs11150032	C	A	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr16	78048655	78048656	chr16:78048656:T:C	rs112050297	T	C	t	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr16	78083382	78083383	chr16:78083383:T:C	rs7184271	T	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr16	78258326	78258327	chr16:78258327:T:A	rs115376590	T	A	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr16	78279098	78279099	chr16:78279099:A:C	rs77670747	A	C	A	Sox1.mouse_HMG_4	4	1	-	8.204395082426029	1.3583130999274482	TGAATAGCCATTGA
chr16	78321549	78321550	chr16:78321550:G:C	rs9926434	G	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr16	78376679	78376680	chr16:78376680:C:T	rs75436498	C	T	c	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr16	78376693	78376694	chr16:78376694:G:A	rs73569009	G	A	g	Sox1.mouse_HMG_4	4	1	-	3.893072801925755	6.615089620753152	TGAACTGGCATCCA
chr16	78506433	78506434	chr16:78506434:C:T	rs62036410	C	T	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr16	78506439	78506440	chr16:78506440:C:G	rs62036411	C	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr16	78780731	78780732	chr16:78780732:G:A	rs4888847	G	A	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr16	78800534	78800535	chr16:78800535:T:G	rs11860793	T	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr16	78810932	78810933	chr16:78810933:C:T	rs8052915	C	T	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr16	78822838	78822839	chr16:78822839:G:C	rs6564599	G	C	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr16	78823063	78823064	chr16:78823064:T:A	rs7197765	T	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr16	78836548	78836549	chr16:78836549:T:A	rs60139965	T	A	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr16	78982218	78982219	chr16:78982219:A:G	rs16949136	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr16	79023530	79023531	chr16:79023531:T:A	rs7199119	T	A	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr16	79162700	79162701	chr16:79162701:C:G	rs12443788	C	G	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr16	79163502	79163503	chr16:79163503:T:C	rs56905720	T	C	t	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr16	79209597	79209598	chr16:79209598:G:A	rs150014193	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr16	79218753	79218754	chr16:79218754:A:G	rs270422	A	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr16	79326905	79326906	chr16:79326906:A:G	rs9927057	A	G	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	79346988	79346989	chr16:79346989:G:T	rs4625732	G	T	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr16	79392686	79392687	chr16:79392687:G:A	rs62039739	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr16	79606150	79606151	chr16:79606151:C:T	rs1045394	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr16	79607825	79607826	chr16:79607826:G:A	rs987895889	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr16	79623870	79623871	chr16:79623871:A:G	rs250144	A	G	A	Sox1.mouse_HMG_4	6	1	-	9.384516569934302	8.862302954694126	CGAATGTGCATTCA
chr16	79638633	79638634	chr16:79638634:A:G	rs11150180	A	G	A	Sox1.mouse_HMG_4	4	1	-	5.7963245609459575	3.0743077421185587	GGAATTCAAAGTCA
chr16	80189265	80189266	chr16:80189266:C:T	rs12918347	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	80299335	80299336	chr16:80299336:G:C	rs12716886	G	C	G	Sox1.mouse_HMG_4	7	1	-	4.315680537507298	3.337922304183648	TGAATATCCAAGCA
chr16	80299362	80299363	chr16:80299363:A:C	rs7187041	A	C	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr16	80378104	80378105	chr16:80378105:G:T	rs149441012	G	T	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr16	80378291	80378292	chr16:80378292:C:G	rs1026932	C	G	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	80485981	80485982	chr16:80485982:G:A	rs10871386	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr16	80519844	80519845	chr16:80519845:G:A	rs11866620	G	A	G	Sox1.mouse_HMG_4	8	1	-	6.505169026198213	6.364137727871072	TGTATTAGCATTCA
chr16	80653054	80653055	chr16:80653055:C:T	rs8055716	C	T	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr16	80673720	80673721	chr16:80673721:T:C	rs7192094	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr16	80984445	80984446	chr16:80984446:T:C	rs28635633	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr16	80993511	80993512	chr16:80993512:A:G	rs2602450	A	G	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr16	81027626	81027627	chr16:81027627:T:C	rs2549886	T	C	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr16	81027631	81027632	chr16:81027632:C:T	rs2602426	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr16	81076080	81076081	chr16:81076081:G:T	rs11862612	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr16	81136578	81136579	chr16:81136579:G:A	rs17765589	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr16	81167901	81167902	chr16:81167902:C:A	rs34188236	C	A	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr16	81254670	81254671	chr16:81254671:A:G	rs77149856	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr16	81272520	81272521	chr16:81272521:A:G	chr16:81272521:A:G	A	G	a	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr16	81307757	81307758	chr16:81307758:G:A	rs9889027	G	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr16	81364914	81364915	chr16:81364915:G:A	rs4889313	G	A	A	Sox1.mouse_HMG_4	4	1	-	5.315015719909668	8.037032538737066	TGAACAGATATTAA
chr16	81397320	81397321	chr16:81397321:C:T	rs12927943	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr16	81405931	81405932	chr16:81405932:C:G	rs13332594	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr16	81405964	81405965	chr16:81405965:C:T	rs1000773502	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	81405982	81405983	chr16:81405983:C:T	rs58938380	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr16	81595767	81595768	chr16:81595768:A:T	rs4889346	A	T	T	Sox1.mouse_HMG_4	13	1	+	4.258772293756373	-2.623972822221597	TGAATGGATAGACA
chr16	81677377	81677378	chr16:81677378:C:A	rs9972695	C	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr16	81731166	81731167	chr16:81731167:G:A	rs12923868	G	A	G	Sox1.mouse_HMG_4	10	1	-	7.28128977931161	14.15705891243589	TGAATACACACTCA
chr16	81842026	81842027	chr16:81842027:T:C	rs74029248	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr16	81893288	81893289	chr16:81893289:A:G	rs4076360	A	G	G	Sox1.mouse_HMG_4	8	1	-	5.359528332574498	5.5005596309016385	AGAACAGATATTCA
chr16	81920152	81920153	chr16:81920153:G:T	rs72824913	G	T	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr16	81945825	81945826	chr16:81945826:C:G	chr16:81945826:C:G	C	G	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr16	82157256	82157257	chr16:82157257:C:G	rs12447876	C	G	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr16	82464091	82464092	chr16:82464092:G:A	rs76645048	G	A	g	Sox1.mouse_HMG_4	1	1	+	3.4865056701336714	-3.42224910918155	CGAATGTCCAATCA
chr16	82780397	82780398	chr16:82780398:G:A	rs7189966	G	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr16	82788066	82788067	chr16:82788067:C:G	rs7185386	C	G	C	Sox1.mouse_HMG_4	12	1	+	7.548634713486085	0.6398799341708645	GGAATAATAAGTCA
chr16	82887365	82887366	chr16:82887366:C:A	rs12716955	C	A	A	Sox1.mouse_HMG_4	5	1	-	6.69253501363028	6.494427142758742	TGAATGAAAATGCC
chr16	83011332	83011333	chr16:83011333:C:G	rs11150531	C	G	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr16	83011375	83011376	chr16:83011376:C:A	rs11150532	C	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr16	83135026	83135027	chr16:83135027:A:T	rs8056329	A	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr16	83151281	83151282	chr16:83151282:C:T	rs77545142	C	T	C	Sox1.mouse_HMG_4	1	1	-	5.911235430589658	-0.9975193487255611	GGAATTCTAATGCA
chr16	83188432	83188433	chr16:83188433:G:A	rs193117828	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr16	83192113	83192114	chr16:83192114:G:A	rs12448939	G	A	G	Sox1.mouse_HMG_4	12	1	-	5.776260817865674	-1.132493961449547	TGAATTAGAAGGCA
chr16	83196659	83196660	chr16:83196660:G:A	rs4445889	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr16	83248985	83248986	chr16:83248986:G:A	rs9931250	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr16	83477361	83477362	chr16:83477362:A:G	rs1489311	A	G	A	Sox1.mouse_HMG_4	4	1	-	10.174089422757797	7.452072603930398	TGAATTGAAATGCA
chr16	83552576	83552577	chr16:83552577:T:C	rs12918411	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr16	83576748	83576749	chr16:83576749:G:C	rs6563938	G	C	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr16	83578575	83578576	chr16:83578576:A:T	rs7197896	A	T	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr16	83701149	83701150	chr16:83701150:G:T	rs67805160	G	T	G	Sox1.mouse_HMG_4	11	1	-	7.749179963834696	7.749179963834696	TGAATTATCATCCA
chr16	83705938	83705939	chr16:83705939:C:G	rs60060661	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr16	83769776	83769777	chr16:83769777:C:T	rs707235	C	T	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	83797270	83797271	chr16:83797271:A:C	rs34792025	A	C	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr16	84002232	84002233	chr16:84002233:G:A	rs1995866	G	A	t	Sox1.mouse_HMG_4	1	1	+	4.297123285706316	-2.6116314936089022	CGACCTGTCATTCA
chr16	84002238	84002239	chr16:84002239:T:C	rs5012586	T	C	C	Sox1.mouse_HMG_4	7	1	+	4.297123285706316	4.059210446521134	CGACCTGTCATTCA
chr16	84008041	84008042	chr16:84008042:T:A	rs12446083	T	A	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	84008052	84008053	chr16:84008053:T:G	rs17724230	T	G	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr16	84011131	84011132	chr16:84011132:A:G	rs111696687	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr16	84036537	84036538	chr16:84036538:C:G	rs8053253	C	G	C	Sox1.mouse_HMG_4	1	1	-	7.237637460769342	0.3288826814541206	CGAATGGATAGTCA
chr16	84098224	84098225	chr16:84098225:C:A	rs11860710	C	A	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr16	84098254	84098255	chr16:84098255:T:C	rs116434605	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	84098271	84098272	chr16:84098272:C:G	rs11860738	C	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr16	84289701	84289702	chr16:84289702:T:C	rs384690	T	C	C	Sox1.mouse_HMG_4	2	1	-	5.006115717710199	-1.9026390616050188	AGAACAGTAATTCA
chr16	84303656	84303657	chr16:84303657:G:A	rs244839	G	A	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	84387084	84387085	chr16:84387085:C:T	rs35236263	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	84387085	84387086	chr16:84387086:G:A	rs74035977	G	A	g	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr16	84486964	84486965	chr16:84486965:T:C	rs199749264	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr16	84504263	84504264	chr16:84504264:C:G	rs143324867	C	G	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	84532370	84532371	chr16:84532371:C:T	rs12051269	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr16	84532378	84532379	chr16:84532379:T:A	rs117496568	T	A	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr16	84625801	84625802	chr16:84625802:T:C	rs57235862	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr16	84726151	84726152	chr16:84726152:C:T	rs8052070	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr16	84790613	84790614	chr16:84790614:T:A	rs118063008	T	A	C	Sox1.mouse_HMG_4	9	1	-	10.875924395492763	4.000155262368482	GGAATTGCCATTCA
chr16	84928288	84928289	chr16:84928289:A:G	rs2641685	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr16	84979673	84979674	chr16:84979674:C:T	rs9935253	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr16	85193285	85193286	chr16:85193286:T:G	rs34674046	T	G	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr16	85196812	85196813	chr16:85196813:C:T	rs62048643	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr16	85295400	85295401	chr16:85295401:G:A	rs34413765	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr16	85336277	85336278	chr16:85336278:C:T	rs113113760	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr16	85341114	85341115	chr16:85341115:C:T	rs79598028	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr16	85352261	85352262	chr16:85352262:C:T	rs55794714	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr16	85587295	85587296	chr16:85587296:C:T	rs6540278	C	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr16	85721680	85721681	chr16:85721681:A:T	rs381170	A	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr16	85782597	85782598	chr16:85782598:C:G	rs100812	C	G	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr16	85908889	85908890	chr16:85908890:T:C	rs305079	T	C	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr16	85910832	85910833	chr16:85910833:A:G	rs391525	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	85942411	85942412	chr16:85942412:G:A	rs305059	G	A	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr16	85979944	85979945	chr16:85979945:G:C	rs1401884	G	C	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	86097113	86097114	chr16:86097114:C:G	rs4843346	C	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr16	86116402	86116403	chr16:86116403:A:C	rs58624148	A	C	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr16	86128654	86128655	chr16:86128655:C:T	rs28679821	C	T	T	Sox1.mouse_HMG_4	1	1	-	7.1515888974544755	0.24283411813925548	TGAATGTCCATGCC
chr16	86277452	86277453	chr16:86277453:C:T	rs3862472	C	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr16	86288726	86288727	chr16:86288727:C:A	rs7185123	C	A	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr16	86384205	86384206	chr16:86384206:A:T	rs1728386	A	T	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr16	86584744	86584745	chr16:86584745:T:G	rs2042393	T	G	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr16	86613315	86613316	chr16:86613316:C:T	rs114976666	C	T	c	Sox1.mouse_HMG_4	1	1	-	4.8296391507525565	-2.079115628562665	CGAATTTGAATTCC
chr16	86741941	86741942	chr16:86741942:C:G	rs408847	C	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr16	86768986	86768987	chr16:86768987:C:A	rs299963	C	A	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr16	86788945	86788946	chr16:86788946:C:T	rs1195861015	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr16	86918544	86918545	chr16:86918545:T:C	rs7500836	T	C	T	Sox1.mouse_HMG_4	10	1	+	5.259766235844201	-1.6160028972800815	TGAACAACTATTGA
chr16	87058897	87058898	chr16:87058898:A:G	rs3901644	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr16	87146781	87146782	chr16:87146782:A:C	rs4843538	A	C	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr16	87173533	87173534	chr16:87173534:C:A	rs74354560	C	A	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr16	87202260	87202261	chr16:87202261:G:A	rs4240792	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr16	87245663	87245664	chr16:87245664:C:T	rs146344916	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr16	87245701	87245702	chr16:87245702:G:A	rs2278267	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr16	87360779	87360780	chr16:87360780:A:G	rs1834022	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr16	87555583	87555584	chr16:87555584:T:C	rs2334208	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr16	87583635	87583636	chr16:87583636:G:A	rs116453218	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr16	87607172	87607173	chr16:87607173:A:C	rs74039507	A	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr16	87823988	87823989	chr16:87823989:T:C	rs7200117	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr16	87969877	87969878	chr16:87969878:C:T	rs4843756	C	T	c	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr16	88012512	88012513	chr16:88012513:G:C	rs7201508	G	C	g	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr16	88360309	88360310	chr16:88360310:G:A	rs1042450443	G	A	N	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr16	88491755	88491756	chr16:88491756:G:A	rs17175830	G	A	g	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr16	88491763	88491764	chr16:88491764:G:A	rs11863449	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.0457103913245565	0.13695561200933581	TGAATTTCTGTGCA
chr16	88561629	88561630	chr16:88561630:C:T	rs76964266	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr16	88561630	88561631	chr16:88561631:A:C	rs76534765	A	C	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr16	88675797	88675798	chr16:88675798:A:C	rs78971841	A	C	A	Sox1.mouse_HMG_4	2	1	+	3.709250592515361	-3.1995041867998584	TGAACTCCCATGCC
chr16	89216849	89216850	chr16:89216850:C:A	rs148341865	C	A	C	Sox1.mouse_HMG_4	1	1	-	5.171728592946819	-1.7370261863684011	GGAACAAACATGCA
chr16	89301089	89301090	chr16:89301090:T:G	rs4785656	T	G	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr16	89435729	89435730	chr16:89435730:G:A	rs115177566	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr16	89521367	89521368	chr16:89521368:C:T	rs118014428	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr16	89562428	89562429	chr16:89562429:G:A	rs138185322	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr16	89876372	89876373	chr16:89876373:G:A	rs62056103	G	A	g	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr17	204299	204300	chr17:204300:A:G	rs34979521	A	G	A	Sox1.mouse_HMG_4	5	1	+	4.186176205654049	3.744396983048711	AGAATATCTATGCA
chr17	261116	261117	chr17:261117:G:A	rs9903116	G	A	g	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr17	262843	262844	chr17:262844:G:T	rs28404325	G	T	G	Sox1.mouse_HMG_4	8	1	-	4.641645896783368	3.882957899044924	TGAATAACCCTGCA
chr17	378885	378886	chr17:378886:C:T	rs12945271	C	T	C	Sox1.mouse_HMG_4	8	1	+	8.381671320950138	8.240640022622998	CGAACAAACATTCA
chr17	731446	731447	chr17:731447:T:C	rs12943242	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr17	755336	755337	chr17:755337:A:G	rs35588043	A	G	a	Sox1.mouse_HMG_4	10	1	-	5.376522108593973	-1.4992470245303082	GGAACAGTTATGCA
chr17	760896	760897	chr17:760897:T:C	rs28547408	T	C	c	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr17	886363	886364	chr17:886364:C:G	rs543913235	C	G	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr17	933558	933559	chr17:933559:C:T	rs572913574	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr17	1115152	1115153	chr17:1115153:T:G	rs8075506	T	G	T	Sox1.mouse_HMG_4	2	1	-	4.023234529805263	-2.8855202495099563	TGAATGTCCTGTCA
chr17	1120050	1120051	chr17:1120051:T:C	rs9746991	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.557429567031607	-2.318339566092674	TGAACTACCATGCC
chr17	1202513	1202514	chr17:1202514:T:C	rs1194572156	T	C	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr17	1374740	1374741	chr17:1374741:T:G	rs117245455	T	G	T	Sox1.mouse_HMG_4	7	1	-	4.438950988165301	4.465282233527121	TGAATAGATATTTC
chr17	1517789	1517790	chr17:1517790:G:A	rs80323293	G	A	A	Sox1.mouse_HMG_4	1	1	+	9.73144429392404	2.8226895146088173	CGAATTACAATTCA
chr17	1666704	1666705	chr17:1666705:T:C	rs55844413	T	C	T	Sox1.mouse_HMG_4	7	1	+	5.4976790750293825	5.259766235844201	TGAACAATTATTGA
chr17	2053382	2053383	chr17:2053383:A:G	rs73976189	A	G	A	Sox1.mouse_HMG_4	2	1	+	3.816212780515907	-3.0925419987993106	AGAACTCCTATTCA
chr17	2101946	2101947	chr17:2101947:T:A	rs9904872	T	A	A	Sox1.mouse_HMG_4	13	1	-	7.186741689651696	0.3039965736737269	TGAATTTCCAGGCA
chr17	2212080	2212081	chr17:2212081:C:T	rs16952020	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr17	2775884	2775885	chr17:2775885:A:G	rs9901621	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.984274327147189	1.1085051940229083	GGAACTTTCATTCA
chr17	2812446	2812447	chr17:2812447:T:G	rs113005440	T	G	T	Sox1.mouse_HMG_4	2	1	-	4.999128532597704	-1.9096262467175154	TGAAGAGTTAGTCA
chr17	2962204	2962205	chr17:2962205:C:T	rs1043417945	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	2966080	2966081	chr17:2966081:G:A	rs7342939	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr17	2966084	2966085	chr17:2966085:C:T	rs142795368	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr17	3023348	3023349	chr17:3023349:G:T	rs117154568	G	T	G	Sox1.mouse_HMG_4	1	1	+	3.7342879726869818	-3.1744668066282387	TGAATGCTCAGACA
chr17	3379159	3379160	chr17:3379160:C:T	rs73309885	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr17	3528674	3528675	chr17:3528675:T:C	rs117095163	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.1699456316101715	3.268395884435571	TGAAGACATATTCA
chr17	3865384	3865385	chr17:3865385:A:G	rs2532947	A	G	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr17	4171862	4171863	chr17:4171863:T:C	rs10775383	T	C	T	Sox1.mouse_HMG_4	0	1	+	9.420770305667508	5.519220558492908	TGAATGGGAATGCA
chr17	4195442	4195443	chr17:4195443:C:T	rs780966536	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr17	4195451	4195452	chr17:4195452:T:C	rs199871848	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr17	4375539	4375540	chr17:4375540:A:G	rs9906760	A	G	g	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr17	4375575	4375576	chr17:4375576:A:G	rs34615715	A	G	a	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr17	4382133	4382134	chr17:4382134:A:G	rs9891529	A	G	A	Sox1.mouse_HMG_4	5	1	-	6.616529545031404	3.6967011349023187	TGAATTGGCAGGCA
chr17	4854481	4854482	chr17:4854482:T:G	rs9891959	T	G	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr17	4967992	4967993	chr17:4967993:T:C	rs117836374	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	5221581	5221582	chr17:5221582:C:T	rs2257308	C	T	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr17	5308105	5308106	chr17:5308106:A:G	rs115993580	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr17	5381628	5381629	chr17:5381629:C:T	rs186407501	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr17	5486039	5486040	chr17:5486040:A:C	rs111604249	A	C	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	5584432	5584433	chr17:5584433:G:A	rs115371403	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr17	5770236	5770237	chr17:5770237:C:T	chr17:5770237:C:T	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr17	5770282	5770283	chr17:5770283:C:A	rs75094597	C	A	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr17	5862084	5862085	chr17:5862085:G:A	rs72837968	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr17	6097418	6097419	chr17:6097419:T:A	rs11078606	T	A	T	Sox1.mouse_HMG_4	5	1	-	4.695950608742098	4.056063515265221	TGAATATTCAGTCT
chr17	6105985	6105986	chr17:6105986:T:C	rs12945598	T	C	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr17	6149825	6149826	chr17:6149826:T:G	rs9895379	T	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr17	6172276	6172277	chr17:6172277:C:T	rs17793742	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr17	6186372	6186373	chr17:6186373:G:T	rs4533336	G	T	G	Sox1.mouse_HMG_4	1	1	+	5.456047018236807	-1.4527077610784127	TGAACAGACATTTA
chr17	6299449	6299450	chr17:6299450:G:C	rs8076399	G	C	g	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	6441105	6441106	chr17:6441106:C:T	rs1328760853	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr17	6476426	6476427	chr17:6476427:T:C	rs12949662	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr17	6603944	6603945	chr17:6603945:T:A	rs914200342	T	A	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr17	6722989	6722990	chr17:6722990:C:A	rs67909507	C	A	c	Sox1.mouse_HMG_4	5	1	-	4.321609596806973	4.123501725935438	GGAATGATCATTTA
chr17	6857618	6857619	chr17:6857619:C:T	rs11078652	C	T	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr17	7132591	7132592	chr17:7132592:C:T	rs12150333	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr17	7409356	7409357	chr17:7409357:C:G	rs11654918	C	G	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr17	7450682	7450683	chr17:7450683:T:A	rs934375162	T	A	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr17	7480264	7480265	chr17:7480265:C:A	rs71370499	C	A	c	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr17	7667659	7667660	chr17:7667660:T:C	rs17886760	T	C	T	Sox1.mouse_HMG_4	3	1	-	3.482709535810674	-3.4047103739935247	TGAAGGGGCAGTCA
chr17	7687140	7687141	chr17:7687141:A:G	rs17883908	A	G	A	Sox1.mouse_HMG_4	8	1	-	3.9995878281285178	4.140619126455658	TGAACGCCTAGGCA
chr17	7889471	7889472	chr17:7889472:C:T	rs182376587	C	T	C	Sox1.mouse_HMG_4	6	1	+	7.0310004897521985	7.553214104992375	TGACCTCCCATTCA
chr17	7913223	7913224	chr17:7913224:G:T	rs12943165	G	T	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr17	8247844	8247845	chr17:8247845:A:C	rs9900520	A	C	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr17	8247859	8247860	chr17:8247860:G:A	rs12946837	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr17	8249093	8249094	chr17:8249094:C:T	chr17:8249094:C:T	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr17	8765927	8765928	chr17:8765928:G:A	rs9903103	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	8811074	8811075	chr17:8811075:T:C	rs112537488	T	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr17	9068099	9068100	chr17:9068100:C:A	rs9944518	C	A	C	Sox1.mouse_HMG_4	1	1	-	5.171713715753314	-1.7370410635619067	TGAACATTTATTGA
chr17	9068118	9068119	chr17:9068119:C:G	rs111789273	C	G	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr17	9102514	9102515	chr17:9102515:C:T	rs4791783	C	T	c	Sox1.mouse_HMG_4	9	1	-	7.748273169374782	11.11309405687779	TGAATTGTCGTTCC
chr17	9102541	9102542	chr17:9102542:A:G	rs11867314	A	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr17	9116723	9116724	chr17:9116724:G:C	rs184187131	G	C	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr17	9230104	9230105	chr17:9230105:G:A	rs3786001	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	9329460	9329461	chr17:9329461:T:G	chr17:9329461:T:G	T	G	T	Sox1.mouse_HMG_4	0	1	+	3.81347588225381	0.21613750948220134	TGATTTTCCAGTCA
chr17	9361816	9361817	chr17:9361817:G:A	rs12944498	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr17	9475151	9475152	chr17:9475152:T:C	rs17741894	T	C	T	Sox1.mouse_HMG_4	0	1	+	3.284601664939136	-0.6169480822354638	TGAAATGGCAGTCA
chr17	9710286	9710287	chr17:9710287:G:C	rs67414899	G	C	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr17	10171594	10171595	chr17:10171595:T:A	rs72810925	T	A	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr17	10260646	10260647	chr17:10260647:G:T	rs7214816	G	T	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr17	10276827	10276828	chr17:10276828:C:G	rs2051986	C	G	C	Sox1.mouse_HMG_4	1	1	-	6.335137438375824	-0.573617340939395	TGAACTAGAATTCC
chr17	10649170	10649171	chr17:10649171:G:A	rs2097657	G	A	A	Sox1.mouse_HMG_4	6	1	-	7.017364514102943	7.539578129343119	GGAATGCTCAGTCA
chr17	10663413	10663414	chr17:10663414:C:T	rs201606	C	T	C	Sox1.mouse_HMG_4	8	1	+	7.289309645919019	7.148278347591879	TGAAGAGGCATTCA
chr17	10800653	10800654	chr17:10800654:G:C	rs75539051	G	C	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr17	10842801	10842802	chr17:10842802:G:A	rs4792043	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	11337421	11337422	chr17:11337422:C:T	rs78429368	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr17	11779088	11779089	chr17:11779089:T:C	rs11868198	T	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr17	11944058	11944059	chr17:11944059:G:A	rs114914586	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	12472418	12472419	chr17:12472419:G:A	rs7223279	G	A	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr17	12936562	12936563	chr17:12936563:C:T	rs12452699	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr17	12979498	12979499	chr17:12979499:T:C	rs2240569	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr17	13012206	13012207	chr17:13012207:C:T	rs182755943	C	T	C	Sox1.mouse_HMG_4	9	1	-	7.9525477278687875	11.317368615371795	TGAACTTACGTTCA
chr17	13238638	13238639	chr17:13238639:T:C	rs8076271	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr17	13457797	13457798	chr17:13457798:C:T	rs9909154	C	T	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	14033086	14033087	chr17:14033087:A:G	rs736261	A	G	g	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr17	14090824	14090825	chr17:14090825:C:G	rs7219323	C	G	G	Sox1.mouse_HMG_4	1	1	-	4.504620030274979	-2.4041347490402405	TGAACAGGCATTAA
chr17	14205731	14205732	chr17:14205732:T:C	rs12452172	T	C	T	Sox1.mouse_HMG_4	5	1	-	3.911041508732616	3.469262286127278	GGAAGAGCAATTCA
chr17	14214245	14214246	chr17:14214246:A:G	rs12150136	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr17	14388229	14388230	chr17:14388230:G:A	rs17692633	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr17	14604599	14604600	chr17:14604600:G:A	rs11653329	G	A	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr17	14644896	14644897	chr17:14644897:G:A	rs12946501	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.630379059573131	0.7216242802579089	TGAATAATAATCCA
chr17	14904625	14904626	chr17:14904626:G:A	rs571415201	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr17	14998268	14998269	chr17:14998269:G:T	rs66856483	G	T	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	15106908	15106909	chr17:15106909:G:A	rs12939369	G	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr17	15260065	15260066	chr17:15260066:G:A	rs77472148	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr17	15279041	15279042	chr17:15279042:G:A	rs1870430	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	16052825	16052826	chr17:16052826:G:T	rs11657912	G	T	G	Sox1.mouse_HMG_4	1	1	+	6.732986620742089	-0.17576815857313188	TGAACATGAATGCA
chr17	16304760	16304761	chr17:16304761:A:C	rs77638573	A	C	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr17	16378108	16378109	chr17:16378109:T:C	rs75557734	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr17	16508207	16508208	chr17:16508208:G:A	rs570889	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr17	16794402	16794403	chr17:16794403:T:C	rs75545764	T	C	.	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr17	16834836	16834837	chr17:16834837:A:C	rs62071964	A	C	N	Sox1.mouse_HMG_4	4	1	-	6.695273401594095	-0.15080858090448435	TGAATGCATGTGCA
chr17	16860125	16860126	chr17:16860126:G:T	rs9890677	G	T	g	Sox1.mouse_HMG_4	12	1	-	6.3121416901333305	-0.5966130891818902	CGAATATGCATGCA
chr17	16860137	16860138	chr17:16860138:G:A	rs12325677	G	A	g	Sox1.mouse_HMG_4	0	1	-	6.3121416901333305	10.213691437307928	CGAATATGCATGCA
chr17	16906848	16906849	chr17:16906849:A:G	rs80224384	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr17	16910156	16910157	chr17:16910157:G:T	rs4578698	G	T	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr17	16980419	16980420	chr17:16980420:T:C	rs4985763	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr17	17038466	17038467	chr17:17038467:G:C	rs10048152	G	C	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr17	17170604	17170605	chr17:17170605:A:C	rs16961393	A	C	A	Sox1.mouse_HMG_4	9	1	+	7.083189306423618	0.20742017329933682	TGAATCCACATGCA
chr17	17210646	17210647	chr17:17210647:G:T	rs76253014	G	T	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr17	17281430	17281431	chr17:17281431:C:G	rs1029832	C	G	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr17	17313620	17313621	chr17:17313621:C:T	rs12941075	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr17	17750095	17750096	chr17:17750096:A:G	chr17:17750096:A:G	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr17	17750096	17750097	chr17:17750097:T:C	rs12945601	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr17	18089002	18089003	chr17:18089003:G:A	rs11868625	G	A	G	Sox1.mouse_HMG_4	2	1	+	4.413909326684789	11.322664106000008	TGGCTAGCCATTCA
chr17	18089015	18089016	chr17:18089016:G:A	rs77885002	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr17	18760489	18760490	chr17:18760490:A:G	rs12943180	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr17	18865268	18865269	chr17:18865269:C:T	rs9903574	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr17	19418384	19418385	chr17:19418385:C:T	rs74816636	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr17	19551963	19551964	chr17:19551964:C:A	rs9909350	C	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr17	19728601	19728602	chr17:19728602:C:T	rs7214841	C	T	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr17	20064621	20064622	chr17:20064622:A:G	rs35156798	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr17	20085808	20085809	chr17:20085809:T:C	rs72830123	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr17	20085812	20085813	chr17:20085813:C:T	rs535306432	C	T	c	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	20476826	20476827	chr17:20476827:C:G	rs56204413	C	G	c	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr17	20553558	20553559	chr17:20553559:C:A	rs73309127	C	A	.	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr17	20841333	20841334	chr17:20841334:A:C	rs9906720	A	C	.	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	20841366	20841367	chr17:20841367:T:C	rs574919425	T	C	.	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr17	20914861	20914862	chr17:20914862:C:T	rs67400789	C	T	.	Sox1.mouse_HMG_4	8	1	+	7.893002233974061	7.751970935646922	TGAATAAACATGCC
chr17	21429224	21429225	chr17:21429225:C:T	rs62051590	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	21515370	21515371	chr17:21515371:G:C	rs62050499	G	C	C	Sox1.mouse_HMG_4	1	1	+	7.59749363514009	0.6887388558248706	TGAATTGCCAATCA
chr17	21515372	21515373	chr17:21515373:A:G	rs151278677	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.59749363514009	0.7100737253358937	TGAATTGCCAATCA
chr17	21666252	21666253	chr17:21666253:C:A	rs1422500678	C	A	.	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr17	21715137	21715138	chr17:21715138:T:C	rs879084822	T	C	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	21749359	21749360	chr17:21749360:G:A	rs1432469272	G	A	.	Sox1.mouse_HMG_4	0	1	-	6.668670588374755	10.570220335549356	CGACTGTTTATTCA
chr17	26866850	26866851	chr17:26866851:T:G	rs1217653207	T	G	N	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr17	27156333	27156334	chr17:27156334:G:A	rs67465449	G	A	g	Sox1.mouse_HMG_4	12	1	-	3.6765538279107277	-3.2322009514044927	TGTATACCCATTCC
chr17	27368057	27368058	chr17:27368058:G:A	rs1676581	G	A	G	Sox1.mouse_HMG_4	4	1	-	4.084175677180664	6.806192496008063	TGAGCGGGCATTCA
chr17	27499101	27499102	chr17:27499102:T:C	rs2008032	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	27629321	27629322	chr17:27629322:A:C	rs12945695	A	C	A	Sox1.mouse_HMG_4	8	1	+	4.675095182623836	5.433783180362279	TGAACAACACTTCA
chr17	27676075	27676076	chr17:27676076:T:C	rs4795887	T	C	C	Sox1.mouse_HMG_4	10	1	-	4.11678881857425	7.627737064195524	TGAACTGCAAATCA
chr17	27762347	27762348	chr17:27762348:A:G	rs9906835	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr17	28573634	28573635	chr17:28573635:C:T	rs41280130	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr17	28606722	28606723	chr17:28606723:C:G	rs34490907	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr17	29095757	29095758	chr17:29095758:T:C	rs12938581	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	29149345	29149346	chr17:29149346:A:G	rs76463991	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr17	29178086	29178087	chr17:29178087:G:A	rs185230530	G	A	G	Sox1.mouse_HMG_4	1	1	+	3.7968228275310008	-3.1119319517842206	TGAAGACACATGCA
chr17	29179199	29179200	chr17:29179200:G:A	rs765108236	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr17	29197786	29197787	chr17:29197787:C:T	rs12946797	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr17	29674397	29674398	chr17:29674398:G:A	rs35057416	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.645001802047247	-2.2637529772679734	TGAAGAAACATGCA
chr17	29727181	29727182	chr17:29727182:T:C	rs142479571	T	C	T	Sox1.mouse_HMG_4	10	1	+	8.27462305252699	1.3988539194027092	TGAACAATAATGCA
chr17	29850252	29850253	chr17:29850253:G:T	rs533627568	G	T	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr17	30429392	30429393	chr17:30429393:C:T	rs16965757	C	T	C	Sox1.mouse_HMG_4	5	1	+	4.421641848342495	7.341470258471582	GGAATCTTCAGTCA
chr17	30540940	30540941	chr17:30540941:C:T	rs11653789	C	T	c	Sox1.mouse_HMG_4	6	1	+	3.9124098841536465	4.434623499393826	TGAACTCACATTCT
chr17	30961317	30961318	chr17:30961318:C:T	rs117725210	C	T	C	Sox1.mouse_HMG_4	3	1	+	5.066193150151428	1.96925899608847	TGACCATTCAGTCA
chr17	31156026	31156027	chr17:31156027:T:C	rs370026303	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	31797060	31797061	chr17:31797061:G:A	rs757289	G	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr17	32111793	32111794	chr17:32111794:G:C	rs77142362	G	C	.	Sox1.mouse_HMG_4	8	1	-	4.444997076105757	-1.6169958296917613	GGAATAAACAGTCC
chr17	32256299	32256300	chr17:32256300:C:T	rs73984135	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr17	32445558	32445559	chr17:32445559:C:T	rs9900089	C	T	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr17	32551786	32551787	chr17:32551787:A:G	rs9904359	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr17	32819371	32819372	chr17:32819372:C:T	rs1055627	C	T	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	32819384	32819385	chr17:32819385:A:G	rs72815091	A	G	a	Sox1.mouse_HMG_4	4	1	-	6.925795676699038	4.203778857871639	TGAATGAAAAGGCA
chr17	32821296	32821297	chr17:32821297:G:A	rs11657049	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr17	32934471	32934472	chr17:32934472:T:C	rs9915765	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr17	33162731	33162732	chr17:33162732:C:G	rs9303661	C	G	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr17	33263029	33263030	chr17:33263030:T:C	rs17836744	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	33280851	33280852	chr17:33280852:G:A	rs1532457	G	A	G	Sox1.mouse_HMG_4	6	1	-	3.9147400859440475	4.436953701184225	TGAACTCACATCCA
chr17	33310526	33310527	chr17:33310527:G:A	rs79260661	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr17	33388583	33388584	chr17:33388584:T:C	rs7225320	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr17	33443714	33443715	chr17:33443715:C:T	rs4530183	C	T	-	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	33476863	33476864	chr17:33476864:C:T	rs7221386	C	T	C	Sox1.mouse_HMG_4	5	1	-	3.8593599340067852	4.301139156612124	TGAACGGGCATGCC
chr17	33850810	33850811	chr17:33850811:C:T	rs317403	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr17	33888369	33888370	chr17:33888370:T:C	rs68085213	T	C	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr17	34272840	34272841	chr17:34272841:A:G	rs3091322	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr17	34400455	34400456	chr17:34400456:G:A	rs77053541	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr17	34420461	34420462	chr17:34420462:A:T	rs151089780	A	T	A	Sox1.mouse_HMG_4	0	1	-	5.548703820498978	-1.3155383461514127	TGACTGAGAATGCA
chr17	34463233	34463234	chr17:34463234:A:G	rs34424278	A	G	G	Sox1.mouse_HMG_4	11	1	-	3.7737006511833417	-3.1067142630042266	TGACTTGACATTCT
chr17	34730447	34730448	chr17:34730448:A:G	rs1860201	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	34758057	34758058	chr17:34758058:T:C	rs7214396	T	C	c	Sox1.mouse_HMG_4	5	1	-	4.391928597075492	3.9501493744701515	TGAACAGGTATCCA
chr17	34822318	34822319	chr17:34822319:G:A	rs62064772	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr17	35265571	35265572	chr17:35265572:C:T	rs11651240	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr17	35389894	35389895	chr17:35389895:C:T	rs767228885	C	T	.	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr17	35510235	35510236	chr17:35510236:G:T	rs55661426	G	T	g	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr17	35531529	35531530	chr17:35531530:A:G	rs11656115	A	G	a	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr17	35930554	35930555	chr17:35930555:G:T	rs11871113	G	T	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr17	36000389	36000390	chr17:36000390:T:G	rs860556	T	G	g	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr17	36083899	36083900	chr17:36083900:T:A	rs1634491	T	A	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr17	36103056	36103057	chr17:36103057:G:T	rs1719141	G	T	-	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	36117828	36117829	chr17:36117829:G:A	rs11656554	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr17	36193437	36193438	chr17:36193438:G:A	rs1343864097	G	A	.	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr17	36193438	36193439	chr17:36193439:A:C	rs1437748888	A	C	.	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr17	36205397	36205398	chr17:36205398:T:A	rs1243142163	T	A	.	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	36229792	36229793	chr17:36229793:C:T	rs1174003951	C	T	.	Sox1.mouse_HMG_4	8	1	+	7.210044150231015	7.069012851903875	TGACTTAACAGTCA
chr17	36467639	36467640	chr17:36467640:C:T	rs139925642	C	T	c	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr17	36724303	36724304	chr17:36724304:C:T	rs62070119	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr17	36818278	36818279	chr17:36818279:T:C	rs9906092	T	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr17	36836406	36836407	chr17:36836407:T:C	rs56228846	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr17	36886242	36886243	chr17:36886243:G:A	rs11652230	G	A	g	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr17	36941658	36941659	chr17:36941659:A:G	rs144623613	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr17	36941677	36941678	chr17:36941678:T:C	rs561307837	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr17	37090332	37090333	chr17:37090333:T:C	rs1266180	T	C	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr17	37519659	37519660	chr17:37519660:G:A	rs2074411	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	37724248	37724249	chr17:37724249:C:T	rs11651496	C	T	T	Sox1.mouse_HMG_4	4	1	+	3.661995240935404	6.384012059762805	GGAACTGGCATGCA
chr17	37814055	37814056	chr17:37814056:C:T	rs142156867	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr17	38915860	38915861	chr17:38915861:C:T	rs141199605	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	39056862	39056863	chr17:39056863:T:G	rs115385982	T	G	T	Sox1.mouse_HMG_4	3	1	-	4.479457694083225	0.6889719383419834	AGAACTTCCATTCA
chr17	39267816	39267817	chr17:39267817:C:T	rs72823390	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr17	39695789	39695790	chr17:39695790:T:G	chr17:39695790:T:G	T	G	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr17	39867491	39867492	chr17:39867492:A:G	rs4795397	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	39944091	39944092	chr17:39944092:G:A	rs186324493	G	A	T	Sox1.mouse_HMG_4	9	1	+	4.960120136871917	8.324941024374924	TGAACGGACGTTCC
chr17	40054505	40054506	chr17:40054506:G:C	rs563444553	G	C	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr17	40065278	40065279	chr17:40065279:A:T	rs138198659	A	T	A	Sox1.mouse_HMG_4	2	1	+	5.666886621824418	-1.241868157490803	GGAACAGTCAGTCA
chr17	40065291	40065292	chr17:40065292:T:C	rs9898816	T	C	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr17	40065308	40065309	chr17:40065309:C:T	rs555475175	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	40065309	40065310	chr17:40065310:G:A	rs115692902	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr17	40075599	40075600	chr17:40075600:T:C	rs939348	T	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr17	40230840	40230841	chr17:40230841:C:T	rs117577021	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr17	40521790	40521791	chr17:40521791:A:G	rs73310959	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr17	40550872	40550873	chr17:40550873:T:A	rs886490	T	A	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr17	40559586	40559587	chr17:40559587:A:C	rs76716642	A	C	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr17	40607991	40607992	chr17:40607992:C:T	rs573336394	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr17	40874030	40874031	chr17:40874031:T:A	rs916926	T	A	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr17	41061194	41061195	chr17:41061195:T:C	rs12602493	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr17	41437932	41437933	chr17:41437933:T:C	rs4796789	T	C	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr17	41663706	41663707	chr17:41663707:G:A	rs75733413	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr17	41673270	41673271	chr17:41673271:A:G	rs79476126	A	G	G	Sox1.mouse_HMG_4	11	1	-	5.233434990482378	-1.6469799237051916	TCAACAAATATTCA
chr17	41681803	41681804	chr17:41681804:T:G	rs73300016	T	G	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr17	41827391	41827392	chr17:41827392:A:C	rs9896766	A	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr17	41885616	41885617	chr17:41885617:C:T	rs35990081	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr17	41895917	41895918	chr17:41895918:T:C	rs933581943	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr17	42276942	42276943	chr17:42276943:A:G	rs4029774	A	G	G	Sox1.mouse_HMG_4	10	1	-	5.027747021624095	-1.8480221115001862	CGAATGTGAATTCC
chr17	42367871	42367872	chr17:42367872:A:G	rs957970	A	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr17	43444938	43444939	chr17:43444939:C:T	rs73314984	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	43444967	43444968	chr17:43444968:C:G	rs113224154	C	G	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr17	43552280	43552281	chr17:43552281:T:C	rs28513436	T	C	T	Sox1.mouse_HMG_4	2	1	-	4.761215693412521	-2.1475390859026993	TGAAAAGCTAGTCA
chr17	43573615	43573616	chr17:43573616:A:G	rs141684777	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr17	43761700	43761701	chr17:43761701:T:C	rs1634330	T	C	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr17	43883682	43883683	chr17:43883683:T:C	rs231519	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr17	43974398	43974399	chr17:43974399:G:A	rs2193640	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr17	44256643	44256644	chr17:44256644:C:T	rs45530735	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr17	44505859	44505860	chr17:44505860:C:G	rs7212640	C	G	C	Sox1.mouse_HMG_4	12	1	+	4.258772293756373	-2.649982485558848	TGAATGGATAGCCA
chr17	44505867	44505868	chr17:44505868:G:A	rs4793114	G	A	g	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr17	44722396	44722397	chr17:44722397:C:T	rs16970944	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr17	44948202	44948203	chr17:44948203:A:G	chr17:44948203:A:G	A	G	A	Sox1.mouse_HMG_4	10	1	-	3.993179279514795	-2.8825898536094874	GGAATTGCCATTCT
chr17	45123872	45123873	chr17:45123873:C:T	rs12604082	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr17	45577842	45577843	chr17:45577843:C:T	rs7223018	C	T	.	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr17	45586968	45586969	chr17:45586969:C:G	rs62064391	C	G	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr17	45712273	45712274	chr17:45712274:A:C	rs62056930	A	C	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr17	45856212	45856213	chr17:45856213:C:A	rs62054832	C	A	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr17	45944096	45944097	chr17:45944097:T:C	rs62062774	T	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr17	46156222	46156223	chr17:46156223:T:C	rs2532293	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr17	46192359	46192360	chr17:46192360:G:A	rs2696635	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr17	46269026	46269027	chr17:46269027:C:G	rs2696561	C	G	.	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr17	46274233	46274234	chr17:46274234:C:T	rs2732707	C	T	.	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr17	46279790	46279791	chr17:46279791:A:G	rs111522045	A	G	.	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr17	46279802	46279803	chr17:46279803:C:T	rs190855134	C	T	.	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr17	46279805	46279806	chr17:46279806:C:T	rs113130019	C	T	.	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr17	46555367	46555368	chr17:46555368:A:G	rs11898	A	G	a	Sox1.mouse_HMG_4	13	1	+	4.8465730897776105	-2.036172026200359	TAAATAATCATGCA
chr17	46815927	46815928	chr17:46815928:T:C	rs67746309	T	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr17	47853217	47853218	chr17:47853218:G:A	rs2074185	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr17	48107520	48107521	chr17:48107521:G:A	rs16952265	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr17	48107563	48107564	chr17:48107564:C:T	rs4794453	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr17	48428324	48428325	chr17:48428325:C:T	rs77463459	C	T	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr17	48428333	48428334	chr17:48428334:A:G	rs7211712	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr17	48444461	48444462	chr17:48444462:C:G	rs185679093	C	G	C	Sox1.mouse_HMG_4	12	1	+	10.822924702180355	3.9141699228651357	TGAACTTTAATTCA
chr17	48606847	48606848	chr17:48606848:T:C	rs9909884	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr17	48630232	48630233	chr17:48630233:G:C	rs78320264	G	C	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr17	49197997	49197998	chr17:49197998:G:A	rs12948798	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr17	49436764	49436765	chr17:49436765:C:A	rs2119929	C	A	c	Sox1.mouse_HMG_4	6	1	+	9.108667301135275	9.95684627565152	TGAATGCGTATGCA
chr17	49482708	49482709	chr17:49482709:C:G	rs2584667	C	G	g	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	49630909	49630910	chr17:49630910:A:G	rs1278402936	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr17	50027083	50027084	chr17:50027084:C:T	rs62059980	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr17	50051522	50051523	chr17:50051523:C:A	rs149339487	C	A	C	Sox1.mouse_HMG_4	12	1	+	3.33260019431925	-3.5761545849959697	TGAAGTCCCAGTCA
chr17	50207819	50207820	chr17:50207820:C:T	rs111286707	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr17	50328827	50328828	chr17:50328828:G:T	rs72832422	G	T	G	Sox1.mouse_HMG_4	4	1	-	4.649500100513138	0.5254349368419546	TGAACACTTATTAA
chr17	50338069	50338070	chr17:50338070:C:T	rs56966521	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr17	50515132	50515133	chr17:50515133:T:A	rs148039790	T	A	T	Sox1.mouse_HMG_4	3	1	-	4.217954886246826	-2.669465023557373	GGAACAGGCATTCC
chr17	50672381	50672382	chr17:50672382:T:C	rs8079556	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr17	50778943	50778944	chr17:50778944:T:C	rs2159431	T	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr17	50788180	50788181	chr17:50788181:T:C	rs4239169	T	C	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr17	50889692	50889693	chr17:50889693:A:T	rs8073064	A	T	a	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr17	51431390	51431391	chr17:51431391:T:C	rs2318980	T	C	T	Sox1.mouse_HMG_4	9	1	-	7.8251888588503205	4.460367971347314	TGAATATCCATCCA
chr17	51431416	51431417	chr17:51431417:C:T	rs4485411	C	T	c	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr17	51713691	51713692	chr17:51713692:A:G	rs1263988	A	G	G	Sox1.mouse_HMG_4	2	1	+	4.413481293505735	-2.4952734858094847	TGAATAACTGTGCC
chr17	52026841	52026842	chr17:52026842:C:T	rs2319633	C	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	52178039	52178040	chr17:52178040:T:A	rs2931365	T	A	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	52178085	52178086	chr17:52178086:G:A	rs566656190	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr17	52239915	52239916	chr17:52239916:A:G	rs967823	A	G	G	Sox1.mouse_HMG_4	9	1	+	6.359507902879912	2.994687015376905	GGAATGAGTATGCA
chr17	52606346	52606347	chr17:52606347:C:A	rs1492208	C	A	A	Sox1.mouse_HMG_4	1	1	-	7.0043767977005835	0.09562201838536177	CGAATGGATATTCC
chr17	52960346	52960347	chr17:52960347:G:C	rs12947496	G	C	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr17	53373915	53373916	chr17:53373916:G:A	rs17740624	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr17	53570944	53570945	chr17:53570945:C:T	rs551852693	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	53687347	53687348	chr17:53687348:A:G	rs73377393	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	53687366	53687367	chr17:53687367:G:A	rs12450990	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr17	54172925	54172926	chr17:54172926:A:G	rs77744045	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr17	54234070	54234071	chr17:54234071:T:C	rs78183968	T	C	T	Sox1.mouse_HMG_4	5	1	+	3.957787413633543	1.0379590035044566	TGACTTGTCAGTCC
chr17	54257619	54257620	chr17:54257620:T:C	rs17659536	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr17	54603647	54603648	chr17:54603648:G:A	rs1429540	G	A	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr17	54801701	54801702	chr17:54801702:G:T	rs1017099	G	T	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr17	54934049	54934050	chr17:54934050:G:A	rs59199526	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr17	54946127	54946128	chr17:54946128:A:G	rs11869726	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr17	55604181	55604182	chr17:55604182:T:C	rs6504981	T	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr17	55865581	55865582	chr17:55865582:T:A	rs1454108	T	A	T	Sox1.mouse_HMG_4	2	1	-	9.862549528272845	2.953794748957625	TGAATAGGAATGCA
chr17	56531477	56531478	chr17:56531478:C:G	rs56181217	C	G	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr17	56595488	56595489	chr17:56595489:G:C	rs116716909	G	C	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr17	56756937	56756938	chr17:56756938:T:C	rs79950940	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr17	56953596	56953597	chr17:56953597:T:C	rs73311876	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr17	57135958	57135959	chr17:57135959:G:T	rs138083824	G	T	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	57264584	57264585	chr17:57264585:G:T	rs9894517	G	T	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr17	57760801	57760802	chr17:57760802:C:T	rs4793915	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr17	57761314	57761315	chr17:57761315:T:G	rs1476730	T	G	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	57761346	57761347	chr17:57761347:T:C	rs1476729	T	C	t	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr17	57772705	57772706	chr17:57772706:T:C	rs9891768	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr17	57931625	57931626	chr17:57931626:G:A	rs78507265	G	A	G	Sox1.mouse_HMG_4	12	1	-	3.9358241543167374	-2.972930624998483	TGAATACCCAGTCT
chr17	58188242	58188243	chr17:58188243:T:C	rs113364181	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr17	58295709	58295710	chr17:58295710:T:C	rs16942914	T	C	C	Sox1.mouse_HMG_4	2	1	-	3.890155826727023	-3.0185989525881967	TGAATAGGCAGCCA
chr17	58446538	58446539	chr17:58446539:G:T	rs2680713	G	T	G	Sox1.mouse_HMG_4	6	1	-	3.267760251496327	4.115939226012573	TGAATGCCCCTTCC
chr17	58595582	58595583	chr17:58595583:T:C	rs193391	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	58652300	58652301	chr17:58652301:T:C	rs567086225	T	C	T	Sox1.mouse_HMG_4	6	1	-	7.313638849499632	7.395219578926922	GGAACTACAATTCA
chr17	60039387	60039388	chr17:60039388:C:G	chr17:60039388:C:G	C	G	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr17	60133642	60133643	chr17:60133643:G:C	rs750409593	G	C	-	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr17	60142947	60142948	chr17:60142948:A:G	rs192522358	A	G	-	Sox1.mouse_HMG_4	0	1	-	6.567841823014852	2.6662920758402517	TGAAATAGCATTCA
chr17	60143153	60143154	chr17:60143154:C:G	rs147574393	C	G	-	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr17	60390932	60390933	chr17:60390933:A:C	rs16944313	A	C	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr17	61164406	61164407	chr17:61164407:A:C	rs8073611	A	C	c	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr17	61372274	61372275	chr17:61372275:G:A	rs11650989	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr17	61414906	61414907	chr17:61414907:A:T	rs758599	A	T	T	Sox1.mouse_HMG_4	6	1	+	4.582329005230607	4.256363645954538	TTAATAAACATGCA
chr17	61567416	61567417	chr17:61567417:G:A	rs8064466	G	A	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr17	61928485	61928486	chr17:61928486:G:A	chr17:61928486:G:A	G	A	G	Sox1.mouse_HMG_4	5	1	-	3.7446996642824324	6.664528074411519	TGAATCCCCGTGCA
chr17	62267163	62267164	chr17:62267164:G:A	rs4968419	G	A	-	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	62309498	62309499	chr17:62309499:A:G	rs62069149	A	G	-	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr17	62357541	62357542	chr17:62357542:C:T	rs4968520	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr17	62565780	62565781	chr17:62565781:G:T	rs11079481	G	T	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr17	62694192	62694193	chr17:62694193:C:T	rs144954304	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr17	62766661	62766662	chr17:62766662:G:A	rs11650060	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr17	62782859	62782860	chr17:62782860:T:C	rs149631508	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr17	62861857	62861858	chr17:62861858:G:A	rs12938895	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr17	62916927	62916928	chr17:62916928:G:A	rs184819297	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	62916946	62916947	chr17:62916947:G:A	rs431804	G	A	A	Sox1.mouse_HMG_4	12	1	-	11.531112300400395	4.622357521085175	GGAATAATTATTCA
chr17	62917237	62917238	chr17:62917238:A:G	rs75334151	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr17	63175901	63175902	chr17:63175902:C:G	rs62077967	C	G	C	Sox1.mouse_HMG_4	4	1	+	9.123193696268887	4.999128532597704	TGAACAGTTGTTCA
chr17	63597353	63597354	chr17:63597354:G:A	rs73992310	G	A	G	Sox1.mouse_HMG_4	7	1	-	3.6688867639851432	3.9067996031703265	TGAATGGCAGGGCA
chr17	63891272	63891273	chr17:63891273:C:T	rs9906063	C	T	c	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr17	64174637	64174638	chr17:64174638:T:C	rs903286	T	C	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr17	64362273	64362274	chr17:64362274:C:T	rs200435358	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr17	64923470	64923471	chr17:64923471:C:A	rs144499608	C	A	.	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr17	64992286	64992287	chr17:64992287:G:T	rs62073286	G	T	T	Sox1.mouse_HMG_4	8	1	-	5.433783180362278	4.675095182623837	TGAACAACCAATCA
chr17	65132344	65132345	chr17:65132345:A:G	rs75227734	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr17	65173500	65173501	chr17:65173501:C:G	rs73347616	C	G	C	Sox1.mouse_HMG_4	12	1	+	5.251555740689974	-1.6571990386252466	TGAATGATGATGCA
chr17	65193698	65193699	chr17:65193699:G:A	rs2056050	G	A	G	Sox1.mouse_HMG_4	12	1	-	7.076718476586832	0.1679636972716112	TGAATTGTAACTCA
chr17	65259906	65259907	chr17:65259907:C:T	rs17689972	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.142906104313638	-2.765848675001582	CGAAGAACTATTCA
chr17	65283819	65283820	chr17:65283820:C:A	rs2067623	C	A	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr17	65362076	65362077	chr17:65362077:A:C	rs2159542	A	C	C	Sox1.mouse_HMG_4	9	1	+	7.135057414035776	0.2592882809114945	GGAATAAAAATGCA
chr17	65492970	65492971	chr17:65492971:G:T	rs7224102	G	T	t	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	65505239	65505240	chr17:65505240:C:G	rs56231931	C	G	-	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr17	65505241	65505242	chr17:65505242:C:G	rs62063435	C	G	-	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr17	65967340	65967341	chr17:65967341:A:G	rs56175806	A	G	G	Sox1.mouse_HMG_4	6	1	+	10.951078470154737	11.032659199582024	TGAATCATAATTCA
chr17	66004758	66004759	chr17:66004759:C:T	rs117143739	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	66272481	66272482	chr17:66272482:T:C	rs62069891	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr17	66378452	66378453	chr17:66378453:A:C	rs12946264	A	C	A	Sox1.mouse_HMG_4	1	1	-	8.442307921611212	15.35106270092643	TTAATAGTCATTCA
chr17	66521194	66521195	chr17:66521195:T:A	rs11651708	T	A	T	Sox1.mouse_HMG_4	13	1	-	4.289349292145476	-2.5933958238324926	TGAATATACTTGCA
chr17	66610394	66610395	chr17:66610395:C:T	rs79319257	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr17	66664617	66664618	chr17:66664618:T:C	rs75971739	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr17	66665405	66665406	chr17:66665406:G:C	rs9896549	G	C	G	Sox1.mouse_HMG_4	4	1	-	8.185132075749188	4.061066912078005	TGAACACTCATGCA
chr17	66885650	66885651	chr17:66885651:G:A	rs62071015	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	66920527	66920528	chr17:66920528:C:T	rs9909857	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr17	67125756	67125757	chr17:67125757:A:G	rs115917218	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr17	67125765	67125766	chr17:67125766:C:T	rs4790891	C	T	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr17	67374849	67374850	chr17:67374850:T:C	rs116498739	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.310191713041581	4.588174894214183	TGAATGAATATGCC
chr17	67522019	67522020	chr17:67522020:C:T	rs191385557	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr17	67584644	67584645	chr17:67584645:A:T	rs17655944	A	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr17	67760382	67760383	chr17:67760383:C:A	rs189093429	C	A	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr17	67858675	67858676	chr17:67858676:G:C	rs114438238	G	C	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr17	68004486	68004487	chr17:68004487:C:T	rs62086889	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr17	68032152	68032153	chr17:68032153:C:T	rs113100959	C	T	c	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr17	68100984	68100985	chr17:68100985:T:C	rs113703000	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr17	68215649	68215650	chr17:68215650:A:G	rs150307499	A	G	A	Sox1.mouse_HMG_4	7	1	+	8.178063837064206	7.226636849102379	TGTATAGACATTCA
chr17	68356469	68356470	chr17:68356470:A:G	rs2041982	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr17	68463382	68463383	chr17:68463383:G:A	rs869657	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr17	68465893	68465894	chr17:68465894:A:G	rs7209319	A	G	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr17	68510122	68510123	chr17:68510123:C:A	rs72847781	C	A	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr17	68517660	68517661	chr17:68517661:G:A	rs28521534	G	A	A	Sox1.mouse_HMG_4	6	1	+	7.395219578926922	7.313638849499632	GGAACTGCAATTCA
chr17	68522164	68522165	chr17:68522165:G:A	rs11651687	G	A	A	Sox1.mouse_HMG_4	13	1	-	6.321751895615641	3.0370883302094374	GGAATTCACATTCC
chr17	68665366	68665367	chr17:68665367:C:T	rs17673884	C	T	T	Sox1.mouse_HMG_4	4	1	+	3.864732936798103	6.586749755625502	TTAACTGGCATTCA
chr17	68697632	68697633	chr17:68697633:G:A	rs145849688	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr17	68812948	68812949	chr17:68812949:A:G	rs7212132	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr17	69302280	69302281	chr17:69302281:C:G	rs494946	C	G	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr17	69384462	69384463	chr17:69384463:C:G	rs506831	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr17	69451219	69451220	chr17:69451220:G:T	rs7223220	G	T	t	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr17	69581344	69581345	chr17:69581345:C:T	rs1025147804	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr17	69606447	69606448	chr17:69606448:G:T	rs757022	G	T	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr17	70204644	70204645	chr17:70204645:G:A	rs116915059	G	A	G	Sox1.mouse_HMG_4	0	1	-	6.504880680356717	10.406430427531314	CGAATATAAATGCA
chr17	70289043	70289044	chr17:70289044:A:G	rs116189418	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr17	70290837	70290838	chr17:70290838:C:T	rs312723	C	T	.	Sox1.mouse_HMG_4	7	1	+	3.967169616177544	4.205082455362725	GGAATTGCCATTTA
chr17	70594818	70594819	chr17:70594819:T:A	rs9892329	T	A	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr17	70594826	70594827	chr17:70594827:T:G	rs965414928	T	G	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr17	71190041	71190042	chr17:71190042:C:T	rs56338429	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr17	71435578	71435579	chr17:71435579:G:A	rs11654451	G	A	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr17	71493902	71493903	chr17:71493903:A:G	rs2190712	A	G	A	Sox1.mouse_HMG_4	5	1	+	5.720291102783812	5.278511880178475	TGAACAGTCATTTA
chr17	71493928	71493929	chr17:71493929:A:G	rs11657947	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr17	71935332	71935333	chr17:71935333:G:T	rs16977017	G	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr17	72004227	72004228	chr17:72004228:A:C	rs73996916	A	C	A	Sox1.mouse_HMG_4	10	1	-	6.158485739117187	2.7936648516141798	AGAATTCTAATTCA
chr17	72095827	72095828	chr17:72095828:G:A	rs8074540	G	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr17	72453767	72453768	chr17:72453768:A:G	rs6501545	A	G	G	Sox1.mouse_HMG_4	3	1	+	4.296748215036071	-2.590671694768127	TGAATGATTCTGCA
chr17	72594382	72594383	chr17:72594383:G:A	rs2344302	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	72663363	72663364	chr17:72663364:T:G	rs4793471	T	G	G	Sox1.mouse_HMG_4	2	1	-	11.95725570884867	5.04850092953345	TGAACATACATTCA
chr17	72678300	72678301	chr17:72678301:T:C	rs570599158	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	72888122	72888123	chr17:72888123:T:G	rs6501572	T	G	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr17	72927623	72927624	chr17:72927624:T:C	rs2452924	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr17	73205535	73205536	chr17:73205536:T:C	rs3829571	T	C	C	Sox1.mouse_HMG_4	9	1	-	6.5806006262460635	3.2157797387430573	TGAATTCCCAGTCC
chr17	73519891	73519892	chr17:73519892:C:T	rs55724221	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr17	74157176	74157177	chr17:74157177:G:T	rs79622097	G	T	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr17	74164806	74164807	chr17:74164807:T:C	rs79681946	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr17	74276967	74276968	chr17:74276968:T:C	rs9900615	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr17	74343917	74343918	chr17:74343918:T:C	rs747321	T	C	C	Sox1.mouse_HMG_4	9	1	-	7.025593103619986	3.6607722161169782	TGAATCCCCATTCC
chr17	74500743	74500744	chr17:74500744:C:T	rs783255	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr17	74548270	74548271	chr17:74548271:A:G	rs4789075	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr17	74626364	74626365	chr17:74626365:A:G	rs78294965	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr17	74643300	74643301	chr17:74643301:G:A	rs2257070	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr17	74643301	74643302	chr17:74643302:C:A	rs2461783	C	A	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr17	74800562	74800563	chr17:74800563:G:A	rs55738125	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr17	75036746	75036747	chr17:75036747:T:G	rs541556703	T	G	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr17	75335468	75335469	chr17:75335469:C:T	chr17:75335469:C:T	C	T	C	Sox1.mouse_HMG_4	7	1	+	4.842491170121753	5.080404009306935	TGTACTGCCATTCA
chr17	75437404	75437405	chr17:75437405:A:G	rs13341593	A	G	a	Sox1.mouse_HMG_4	10	1	-	4.557429567031607	-2.318339566092674	TGAACTACCATGCC
chr17	75689591	75689592	chr17:75689592:G:A	rs820219	G	A	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr17	75691701	75691702	chr17:75691702:T:C	rs58765618	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr17	75776322	75776323	chr17:75776323:G:A	rs1019547099	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr17	75780294	75780295	chr17:75780295:C:T	rs528960313	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr17	76182430	76182431	chr17:76182431:T:G	rs115595711	T	G	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr17	76201161	76201162	chr17:76201162:C:T	rs6416850	C	T	T	Sox1.mouse_HMG_4	8	1	+	3.946156042434305	3.8051247441071645	TGAAAACACGTTCA
chr17	76261983	76261984	chr17:76261984:G:A	rs116950308	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr17	76315482	76315483	chr17:76315483:C:G	rs73996323	C	G	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr17	76816866	76816867	chr17:76816867:A:G	rs544948329	A	G	a	Sox1.mouse_HMG_4	9	1	+	7.070857760588861	3.7060368730858553	TGAACTTCAATGCA
chr17	76839978	76839979	chr17:76839979:G:C	rs75514450	G	C	G	Sox1.mouse_HMG_4	4	1	-	4.494621324635666	0.3705561609644843	GGAACAGAAATGCA
chr17	77019959	77019960	chr17:77019960:A:C	rs1162621089	A	C	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr17	77020004	77020005	chr17:77020005:C:A	rs138789570	C	A	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr17	77320414	77320415	chr17:77320415:C:T	rs3760143	C	T	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr17	77354302	77354303	chr17:77354303:G:C	rs547247456	G	C	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr17	77354304	77354305	chr17:77354305:C:T	rs1355604362	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr17	77368103	77368104	chr17:77368104:G:A	rs11649986	G	A	G	Sox1.mouse_HMG_4	4	1	+	5.912401838721992	5.912401838721992	TGAAGTCAAATTCA
chr17	77411243	77411244	chr17:77411244:A:G	rs539495930	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.0588353758508875	-2.816933757273393	TGAATGACTCTGCA
chr17	77424827	77424828	chr17:77424828:T:G	chr17:77424828:T:G	T	G	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr17	77455763	77455764	chr17:77455764:C:T	rs141305716	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr17	77465599	77465600	chr17:77465600:A:G	rs76601051	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.736284614458868	4.37146372695586	TGAATGGACATTGA
chr17	77622894	77622895	chr17:77622895:T:C	rs74400293	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr17	77722982	77722983	chr17:77722983:C:T	rs9889699	C	T	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr17	77723015	77723016	chr17:77723016:C:T	rs140299979	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	77745361	77745362	chr17:77745362:A:C	rs2118224	A	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr17	77756411	77756412	chr17:77756412:C:T	rs76859348	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr17	77828012	77828013	chr17:77828013:A:G	rs11870565	A	G	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr17	77828802	77828803	chr17:77828803:T:G	rs111211000	T	G	-	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr17	77829196	77829197	chr17:77829197:T:C	rs73370425	T	C	t	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr17	77892511	77892512	chr17:77892512:G:C	rs62078515	G	C	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr17	77892551	77892552	chr17:77892552:G:A	rs533493630	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr17	78134143	78134144	chr17:78134144:C:T	rs145030254	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr17	78134182	78134183	chr17:78134183:G:A	rs77048878	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr17	78145428	78145429	chr17:78145429:A:C	rs34816169	A	C	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr17	78197090	78197091	chr17:78197091:A:C	rs76913674	A	C	a	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr17	78241681	78241682	chr17:78241682:A:G	rs11655396	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.419129841828706	1.0543089543256994	TGATTGGCCAGTCA
chr17	78241695	78241696	chr17:78241696:A:G	rs146536417	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr17	78361792	78361793	chr17:78361793:G:A	rs11868378	G	A	a	Sox1.mouse_HMG_4	8	1	-	3.8669253320482717	3.725894033721131	TGAATGTCCATGCT
chr17	78407902	78407903	chr17:78407903:G:A	rs4129767	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr17	78536722	78536723	chr17:78536723:A:C	rs56662986	A	C	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr17	78553069	78553070	chr17:78553070:C:G	rs8080186	C	G	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr17	78607137	78607138	chr17:78607138:C:T	rs116209810	C	T	C	Sox1.mouse_HMG_4	6	1	+	4.498470900895542	5.020684516135718	TGAACACCCAGTCC
chr17	78665984	78665985	chr17:78665985:C:T	rs77229431	C	T	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr17	78665985	78665986	chr17:78665986:G:A	rs151282041	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr17	78698017	78698018	chr17:78698018:C:T	rs113094786	C	T	c	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr17	78736856	78736857	chr17:78736857:C:T	rs117039140	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr17	78826085	78826086	chr17:78826086:T:C	rs1531797	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr17	78916307	78916308	chr17:78916308:C:T	rs149309061	C	T	C	Sox1.mouse_HMG_4	1	1	-	8.127576331303542	1.218821551988323	GGAACTGACATTCA
chr17	79043136	79043137	chr17:79043137:G:A	rs59605649	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr17	79236257	79236258	chr17:79236258:G:C	rs9911225	G	C	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr17	79652025	79652026	chr17:79652026:A:G	rs996401233	A	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr17	79652048	79652049	chr17:79652049:G:A	rs1022558484	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr17	79914628	79914629	chr17:79914629:G:A	rs1663184	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr17	80126322	80126323	chr17:80126323:C:T	rs4889824	C	T	t	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr17	80126355	80126356	chr17:80126356:T:A	rs4889825	T	A	t	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr17	80361571	80361572	chr17:80361572:T:C	rs4078429	T	C	T	Sox1.mouse_HMG_4	6	1	+	4.277261723357553	3.755048108117376	TGACTATTCCTTCA
chr17	80539623	80539624	chr17:80539624:C:T	rs76871400	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr17	80648811	80648812	chr17:80648812:T:C	rs9914825	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr17	80678678	80678679	chr17:80678679:G:A	rs35821645	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr17	80961848	80961849	chr17:80961849:C:T	rs369433882	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr17	81047503	81047504	chr17:81047504:T:G	rs115190157	T	G	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr17	81076672	81076673	chr17:81076673:A:G	rs4969373	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr17	81449108	81449109	chr17:81449109:C:T	rs577859800	C	T	C	Sox1.mouse_HMG_4	11	1	-	4.541942600012565	1.1756817882313062	TGAGTATTCATGCA
chr17	81520648	81520649	chr17:81520649:G:A	rs76304272	G	A	G	Sox1.mouse_HMG_4	5	1	+	4.153573219148246	4.595352441753585	TGAACGCTTAGTCC
chr17	81672952	81672953	chr17:81672953:C:T	rs59853503	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.659062615627182	7.3810794344545805	TGAACGTCCATTCT
chr17	82127406	82127407	chr17:82127407:C:T	rs73360060	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr17	82127418	82127419	chr17:82127419:C:T	rs74001545	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr17	82127449	82127450	chr17:82127450:G:A	rs62078305	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr17	82376591	82376592	chr17:82376592:G:A	rs11650125	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr17	82582536	82582537	chr17:82582537:G:A	rs149902707	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr17	82690807	82690808	chr17:82690808:C:T	rs150581754	C	T	c	Sox1.mouse_HMG_4	0	1	-	4.323549618430573	1.056645824551792	GGAACACACATGCA
chr17	82828131	82828132	chr17:82828132:G:A	rs6502134	G	A	-	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr17	82858556	82858557	chr17:82858557:G:A	rs76839842	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr17	83106034	83106035	chr17:83106035:A:G	rs28627461	A	G	a	Sox1.mouse_HMG_4	13	1	+	3.8593269852188223	-3.0234181307591466	GGAACTCCCAGTCA
chr18	322182	322183	chr18:322183:G:A	rs554821	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr18	434530	434531	chr18:434531:C:T	rs900053776	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr18	435950	435951	chr18:435951:T:C	rs2846643	T	C	T	Sox1.mouse_HMG_4	5	1	-	5.579259804456673	5.1374805818513325	TGAACAGTTATTAA
chr18	650815	650816	chr18:650816:G:A	rs11081234	G	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr18	689212	689213	chr18:689213:C:T	rs761359708	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr18	689241	689242	chr18:689242:G:C	rs7227180	G	C	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr18	715713	715714	chr18:715714:T:C	rs6506469	T	C	-	Sox1.mouse_HMG_4	0	1	+	4.579982286492441	0.6784325393178405	TTAATAGACATTCC
chr18	771045	771046	chr18:771046:C:G	rs12955644	C	G	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr18	841269	841270	chr18:841270:T:G	rs9964297	T	G	T	Sox1.mouse_HMG_4	13	1	-	6.212531960811466	2.6144504102397006	TGACTTCACATGCA
chr18	845844	845845	chr18:845845:A:T	rs7238603	A	T	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr18	1019185	1019186	chr18:1019186:C:A	rs1849192	C	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr18	1019190	1019191	chr18:1019191:G:A	rs1849193	G	A	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr18	1746419	1746420	chr18:1746420:C:T	rs10164065	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr18	1965468	1965469	chr18:1965469:G:A	rs7236577	G	A	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr18	2351159	2351160	chr18:2351160:C:T	rs6506006	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr18	2444655	2444656	chr18:2444656:G:A	rs9946882	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr18	2962178	2962179	chr18:2962179:A:G	rs11662054	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr18	2962195	2962196	chr18:2962196:G:A	rs118025491	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr18	3002923	3002924	chr18:3002924:C:T	rs664607	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr18	3026344	3026345	chr18:3026345:C:T	rs12962852	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr18	3037391	3037392	chr18:3037392:G:A	rs72856973	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr18	3059306	3059307	chr18:3059307:G:T	rs138495371	G	T	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr18	3213658	3213659	chr18:3213659:G:C	rs1615027	G	C	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr18	3337018	3337019	chr18:3337019:C:T	rs1791088	C	T	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr18	3337025	3337026	chr18:3337026:T:C	rs1629295	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr18	3485494	3485495	chr18:3485495:G:A	rs80329736	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.210400126981309	4.069368828654169	TGAAAACTCAGTCA
chr18	3605933	3605934	chr18:3605934:G:A	rs11876411	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr18	3671633	3671634	chr18:3671634:A:C	rs1116346	A	C	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr18	3671651	3671652	chr18:3671652:T:C	rs1116345	T	C	C	Sox1.mouse_HMG_4	3	1	-	6.28687843951953	-0.6005414702846681	GGAATACAAATGCA
chr18	3914490	3914491	chr18:3914491:C:T	rs2083670	C	T	C	Sox1.mouse_HMG_4	7	1	+	4.641645896783368	4.879558735968551	TGAATAACCCTGCA
chr18	3916560	3916561	chr18:3916561:T:G	rs4798144	T	G	T	Sox1.mouse_HMG_4	7	1	+	5.345730660271393	4.130059587762561	TGAACATTCACTCA
chr18	3985105	3985106	chr18:3985106:C:A	rs182815232	C	A	C	Sox1.mouse_HMG_4	12	1	+	7.998539376222394	1.089784596907173	TGAACCCTTATTCA
chr18	3993608	3993609	chr18:3993609:G:A	rs9957800	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr18	4068571	4068572	chr18:4068572:T:C	rs35856790	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr18	4547611	4547612	chr18:4547612:G:T	rs75328277	G	T	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr18	4789769	4789770	chr18:4789770:A:C	chr18:4789770:A:C	A	C	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr18	4933179	4933180	chr18:4933180:A:G	rs35809330	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr18	5058304	5058305	chr18:5058305:A:G	rs35913019	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr18	5175258	5175259	chr18:5175259:T:C	rs292331	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr18	5311424	5311425	chr18:5311425:G:A	rs56185543	G	A	G	Sox1.mouse_HMG_4	13	1	-	7.134314236235618	3.849650670829414	TGAATAAAAATGCC
chr18	5461058	5461059	chr18:5461059:G:A	rs11081197	G	A	A	Sox1.mouse_HMG_4	10	1	+	6.12579918596275	2.6148509403414755	GGAATTTGCAGTCA
chr18	5526499	5526500	chr18:5526500:A:C	rs2040193	A	C	A	Sox1.mouse_HMG_4	3	1	+	7.011829750622405	3.221343994881167	TGAATATAAATTTA
chr18	5551126	5551127	chr18:5551127:T:C	rs1619724	T	C	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr18	5600824	5600825	chr18:5600825:G:C	rs115485286	G	C	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr18	5868147	5868148	chr18:5868148:C:T	rs74976487	C	T	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr18	6855274	6855275	chr18:6855275:C:T	rs67382010	C	T	C	Sox1.mouse_HMG_4	12	1	+	5.066193150151428	-1.8425616291637923	TGACCATTCAGTCA
chr18	6983454	6983455	chr18:6983455:A:G	rs6650623	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.745972484459442	1.3811515969564365	AGAACTGCTATTCA
chr18	7039034	7039035	chr18:7039035:G:A	rs62083462	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr18	7164754	7164755	chr18:7164755:A:G	rs450015	A	G	G	Sox1.mouse_HMG_4	5	1	-	6.905646770381739	3.985818360252651	TGAATTCTCTTTCA
chr18	7164774	7164775	chr18:7164775:T:C	rs9962962	T	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr18	7657268	7657269	chr18:7657269:C:T	rs73387584	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr18	7657282	7657283	chr18:7657283:C:T	rs75532269	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.762012266000379	-2.146742513314841	TGAACTGACAGTCC
chr18	7770966	7770967	chr18:7770967:T:C	rs1446084	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr18	7980687	7980688	chr18:7980688:G:C	rs17476082	G	C	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr18	7980690	7980691	chr18:7980691:G:C	rs28523954	G	C	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr18	8050298	8050299	chr18:8050299:A:T	rs10513902	A	T	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr18	8106937	8106938	chr18:8106938:A:G	rs6506548	A	G	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr18	8141506	8141507	chr18:8141507:A:C	rs115698083	A	C	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr18	8172563	8172564	chr18:8172564:A:G	rs61656974	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr18	8334016	8334017	chr18:8334017:T:C	rs101210	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr18	8601333	8601334	chr18:8601334:C:A	rs76661047	C	A	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr18	8601343	8601344	chr18:8601344:T:C	chr18:8601344:T:C	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr18	8627638	8627639	chr18:8627639:T:C	rs12458216	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr18	8799449	8799450	chr18:8799450:G:T	rs564629	G	T	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr18	9070778	9070779	chr18:9070779:G:C	rs565421526	G	C	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr18	9135778	9135779	chr18:9135779:G:C	chr18:9135779:G:C	G	C	g	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr18	9759076	9759077	chr18:9759077:G:A	rs9965664	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr18	9759105	9759106	chr18:9759106:G:C	rs9965737	G	C	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr18	9809392	9809393	chr18:9809393:G:T	rs62081235	G	T	G	Sox1.mouse_HMG_4	12	1	-	6.679260897670447	-0.22949388164477402	AGAATTCCCATTCA
chr18	9885980	9885981	chr18:9885981:C:A	rs17805483	C	A	C	Sox1.mouse_HMG_4	7	1	-	5.817807795961216	7.033478868470048	GGACTACGCATTCA
chr18	10237467	10237468	chr18:10237468:G:T	rs56183456	G	T	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr18	10305331	10305332	chr18:10305332:G:A	rs926585666	G	A	G	Sox1.mouse_HMG_4	5	1	+	11.082753847780957	11.524533070386294	TGAACGAAAATTCA
chr18	10377308	10377309	chr18:10377309:G:A	rs12965406	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr18	10497828	10497829	chr18:10497829:G:A	rs660030	G	A	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr18	11035656	11035657	chr18:11035657:G:T	rs2660255	G	T	G	Sox1.mouse_HMG_4	12	1	-	6.097831907846148	-0.8109228714690728	TGACTTCCTATGCA
chr18	11163256	11163257	chr18:11163257:C:T	rs4506977	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr18	12086454	12086455	chr18:12086455:C:T	rs76721040	C	T	.	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr18	12220020	12220021	chr18:12220021:T:C	rs3016831	T	C	N	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr18	12407581	12407582	chr18:12407582:T:C	rs56258053	T	C	T	Sox1.mouse_HMG_4	12	1	-	5.374466288809519	5.374466288809519	TGAACAAACATTAA
chr18	12407602	12407603	chr18:12407603:A:C	rs116904634	A	C	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr18	12640421	12640422	chr18:12640422:A:G	rs9303774	A	G	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr18	12911265	12911266	chr18:12911266:G:A	rs983351091	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr18	13244430	13244431	chr18:13244431:T:C	rs55962651	T	C	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr18	13267488	13267489	chr18:13267489:A:G	rs182433594	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr18	13532318	13532319	chr18:13532319:A:T	rs62084760	A	T	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr18	13559348	13559349	chr18:13559349:C:A	rs10853237	C	A	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr18	13804768	13804769	chr18:13804769:G:A	rs1284077	G	A	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr18	13913628	13913629	chr18:13913629:G:A	rs1541285	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr18	13932614	13932615	chr18:13932615:T:C	rs8095087	T	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr18	14797350	14797351	chr18:14797351:G:T	rs78271606	G	T	-	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr18	21067237	21067238	chr18:21067238:T:C	rs74698527	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.579982286492443	-2.307437623311756	TGAATAGACATTTC
chr18	21613065	21613066	chr18:21613066:C:T	rs72884773	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr18	21620862	21620863	chr18:21620863:G:A	rs3017641	G	A	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr18	21702781	21702782	chr18:21702782:T:G	rs115482183	T	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr18	21778004	21778005	chr18:21778005:G:C	rs77229914	G	C	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr18	21993437	21993438	chr18:21993438:T:C	rs34837407	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.359617975729919	-2.5161511573943622	TGAATCACCATGCC
chr18	22200253	22200254	chr18:22200254:G:A	rs16964670	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr18	22206835	22206836	chr18:22206836:G:A	rs1023064126	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr18	22470811	22470812	chr18:22470812:T:C	rs147397860	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr18	22477310	22477311	chr18:22477311:T:A	rs563969	T	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr18	22551626	22551627	chr18:22551627:A:T	rs113124813	A	T	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr18	23178345	23178346	chr18:23178346:A:G	rs34302357	A	G	A	Sox1.mouse_HMG_4	13	1	+	9.14108170536868	2.2583365893907112	TGAATTAGAATGCA
chr18	23660179	23660180	chr18:23660180:G:A	rs12970798	G	A	G	Sox1.mouse_HMG_4	5	1	-	6.653975933701968	9.573804343831052	TGAATCTGCATGCA
chr18	24397172	24397173	chr18:24397173:A:G	rs73396232	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr18	24582936	24582937	chr18:24582937:T:A	rs12457464	T	A	T	Sox1.mouse_HMG_4	7	1	-	7.169930870131887	7.434174954678893	GGAATTAACATTCC
chr18	24595807	24595808	chr18:24595808:G:T	rs141178361	G	T	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr18	24595835	24595836	chr18:24595836:A:T	rs903040267	A	T	A	Sox1.mouse_HMG_4	13	1	+	3.699906991687355	-3.182838124290614	TGAATCGGCTTTCA
chr18	24601343	24601344	chr18:24601344:G:A	rs12957078	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr18	24661968	24661969	chr18:24661969:C:T	rs1450514	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr18	24837353	24837354	chr18:24837354:T:C	rs9304473	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.704954793383791	3.8034050462091917	TGAGTAGTAATTCA
chr18	24869125	24869126	chr18:24869126:A:T	rs78280432	A	T	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr18	25453877	25453878	chr18:25453878:G:A	rs8087655	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr18	26226115	26226116	chr18:26226116:T:A	rs77106401	T	A	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr18	26229110	26229111	chr18:26229111:G:C	rs75452116	G	C	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr18	26507945	26507946	chr18:26507946:A:G	rs17799897	A	G	A	Sox1.mouse_HMG_4	5	1	+	4.500096256952884	4.058317034347546	GGAAGATTCATTCA
chr18	26783145	26783146	chr18:26783146:A:G	rs1017415	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr18	27383196	27383197	chr18:27383197:C:G	rs17642965	C	G	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr18	27412713	27412714	chr18:27412714:C:T	rs1208363470	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.918019264774381	7.640036083601781	TGAACCTCTAGTCA
chr18	27620433	27620434	chr18:27620434:A:T	rs13381024	A	T	T	Sox1.mouse_HMG_4	10	1	-	7.7835128955236845	0.9077437623994038	TGAAATATCATTCA
chr18	27769282	27769283	chr18:27769283:C:T	rs183971215	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr18	27782101	27782102	chr18:27782102:C:G	rs4558480	C	G	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr18	28594343	28594344	chr18:28594344:G:A	rs17757042	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr18	29841773	29841774	chr18:29841774:T:C	rs7234812	T	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr18	30245475	30245476	chr18:30245476:T:C	rs4452027	T	C	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr18	30513779	30513780	chr18:30513780:A:G	rs12457733	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr18	30513781	30513782	chr18:30513782:A:G	rs12457734	A	G	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr18	30558905	30558906	chr18:30558906:G:A	rs2111656	G	A	A	Sox1.mouse_HMG_4	6	1	+	6.673606117575804	6.592025388148513	TGAATGGGTAGGCA
chr18	30684888	30684889	chr18:30684889:A:G	rs1943552	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr18	30917997	30917998	chr18:30917998:C:T	rs17725341	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr18	31615306	31615307	chr18:31615307:C:G	rs74500720	C	G	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr18	32020544	32020545	chr18:32020545:C:T	rs12967475	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr18	32351182	32351183	chr18:32351183:G:T	rs10502590	G	T	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr18	32804022	32804023	chr18:32804023:A:G	rs16963869	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr18	33442054	33442055	chr18:33442055:G:C	rs72949737	G	C	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr18	33712989	33712990	chr18:33712990:C:T	rs17746706	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr18	33713534	33713535	chr18:33713535:G:A	rs10468909	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr18	34158264	34158265	chr18:34158265:A:G	rs988593291	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.228026966573795	1.506010147746396	TGAATTGCCAGCCA
chr18	34185771	34185772	chr18:34185772:A:T	rs8087304	A	T	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr18	34339355	34339356	chr18:34339356:T:C	rs80015263	T	C	T	Sox1.mouse_HMG_4	10	1	+	6.8726611241908	-0.003108008933482731	TGAATTCTCATTTA
chr18	34649975	34649976	chr18:34649976:T:C	rs17642885	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr18	34661635	34661636	chr18:34661636:A:G	rs763597881	A	G	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr18	34907260	34907261	chr18:34907261:G:A	rs9965828	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr18	35513441	35513442	chr18:35513442:C:T	rs17646987	C	T	T	Sox1.mouse_HMG_4	12	1	+	7.26599635373865	0.35724157442342963	TGACTACTCAGTCA
chr18	36045406	36045407	chr18:36045407:G:A	rs1789506	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr18	36089098	36089099	chr18:36089099:A:T	rs1786246	A	T	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr18	36466213	36466214	chr18:36466214:G:A	rs1554009	G	A	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr18	36711534	36711535	chr18:36711535:T:C	rs146919316	T	C	T	Sox1.mouse_HMG_4	7	1	-	4.841582814688852	3.890155826727023	TGAATAGACAGACA
chr18	37161702	37161703	chr18:37161703:C:T	rs16968586	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr18	37407391	37407392	chr18:37407392:C:A	rs2226726	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr18	37937555	37937556	chr18:37937556:G:A	rs61617437	G	A	g	Sox1.mouse_HMG_4	1	1	+	7.823364956900552	0.9146101775853304	CGAACTGACATTCA
chr18	37960845	37960846	chr18:37960846:A:G	rs11662363	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr18	38483250	38483251	chr18:38483251:G:A	rs73948002	G	A	G	Sox1.mouse_HMG_4	6	1	+	10.99255795169853	10.910977222271239	TGAACTGCAATTCA
chr18	38644250	38644251	chr18:38644251:A:T	rs10502706	A	T	A	Sox1.mouse_HMG_4	2	1	+	10.99663987135439	4.087885092039167	TGAATAATAATGCA
chr18	38748956	38748957	chr18:38748957:T:G	rs16970894	T	G	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr18	38883331	38883332	chr18:38883332:G:A	rs139199423	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr18	39600781	39600782	chr18:39600782:G:A	rs2726252	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr18	39742133	39742134	chr18:39742134:T:C	rs2726223	T	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr18	40675721	40675722	chr18:40675722:A:C	rs7238768	A	C	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr18	40940127	40940128	chr18:40940128:G:T	rs17759408	G	T	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr18	41956188	41956189	chr18:41956189:T:C	rs16975453	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr18	42232937	42232938	chr18:42232938:G:A	rs12967716	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr18	42304034	42304035	chr18:42304035:C:T	rs72901367	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr18	42611499	42611500	chr18:42611500:C:T	rs629764	C	T	C	Sox1.mouse_HMG_4	7	1	+	7.313638849499632	7.551551688684815	GGAACTACAATTCA
chr18	42614157	42614158	chr18:42614158:T:C	rs79215362	T	C	T	Sox1.mouse_HMG_4	10	1	+	6.8190907603990185	-0.056678372725262216	TGAATATGCATTGA
chr18	42615173	42615174	chr18:42615174:T:G	rs55843226	T	G	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr18	42807968	42807969	chr18:42807969:A:G	rs58657075	A	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr18	43060056	43060057	chr18:43060057:T:C	rs576086455	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr18	43060199	43060200	chr18:43060200:G:C	rs67753116	G	C	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr18	43626779	43626780	chr18:43626780:A:G	rs16977611	A	G	A	Sox1.mouse_HMG_4	10	1	+	8.393712838374862	11.904661083996135	TGAATAATCAATCA
chr18	43892697	43892698	chr18:43892698:C:T	rs2290872	C	T	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr18	43934845	43934846	chr18:43934846:C:T	rs16977749	C	T	c	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr18	44332106	44332107	chr18:44332107:A:G	rs56882310	A	G	g	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr18	45157153	45157154	chr18:45157154:A:G	rs1257566872	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr18	45247892	45247893	chr18:45247893:G:C	rs58334889	G	C	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr18	45292150	45292151	chr18:45292151:G:A	rs12455457	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr18	45436921	45436922	chr18:45436922:A:C	rs1026931134	A	C	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr18	45504376	45504377	chr18:45504377:G:A	rs2612582	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr18	45517547	45517548	chr18:45517548:A:C	rs146541067	A	C	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr18	45517590	45517591	chr18:45517591:G:A	rs573413362	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr18	45535387	45535388	chr18:45535388:A:G	rs12052000	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr18	45565807	45565808	chr18:45565808:T:C	rs2705374	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr18	45754839	45754840	chr18:45754840:C:T	rs8090267	C	T	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr18	46077912	46077913	chr18:46077913:G:A	rs7238278	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr18	46211822	46211823	chr18:46211823:T:G	rs73956261	T	G	t	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr18	47184575	47184576	chr18:47184576:T:G	chr18:47184576:T:G	T	G	T	Sox1.mouse_HMG_4	2	1	-	9.419994179079387	2.5112393997641673	TGAATTCCAAGTCA
chr18	47478678	47478679	chr18:47478679:G:A	rs11082591	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr18	47483345	47483346	chr18:47483346:T:C	rs2082651	T	C	T	Sox1.mouse_HMG_4	7	1	+	4.967712576107448	4.729799736922264	TGAACTGTTATACA
chr18	47777635	47777636	chr18:47777636:C:T	rs2653654	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr18	48004859	48004860	chr18:48004860:T:A	rs4329718	T	A	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr18	48061125	48061126	chr18:48061126:A:G	rs4245248	A	G	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr18	48171520	48171521	chr18:48171521:C:G	rs9967534	C	G	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr18	48348899	48348900	chr18:48348900:G:A	rs57080481	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr18	48351119	48351120	chr18:48351120:T:C	rs9304363	T	C	C	Sox1.mouse_HMG_4	2	1	-	7.82528865663733	0.9165338773221088	TGAAGGGCCATTCA
chr18	48739074	48739075	chr18:48739075:T:C	rs59784013	T	C	T	Sox1.mouse_HMG_4	5	1	-	4.862277616073861	4.420498393468523	GGACCAGCTATTCA
chr18	48778428	48778429	chr18:48778429:G:A	rs56321524	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr18	48868650	48868651	chr18:48868651:A:G	rs7240004	A	G	G	Sox1.mouse_HMG_4	9	1	+	4.467466663988912	1.1026457764859054	TGAAAGATCATGCA
chr18	48957817	48957818	chr18:48957818:C:T	rs1319952	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr18	49052490	49052491	chr18:49052491:T:C	rs1013325697	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr18	49461269	49461270	chr18:49461270:C:T	rs16950548	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr18	49613808	49613809	chr18:49613809:A:G	rs8089053	A	G	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr18	49649096	49649097	chr18:49649097:T:C	rs7233365	T	C	t	Sox1.mouse_HMG_4	3	1	-	4.524732802426972	-2.362687107377226	TTAATAACCATTCC
chr18	49757791	49757792	chr18:49757792:C:T	rs12604609	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.635707811502866	4.554127082075577	TGAATGGTCAGTGA
chr18	49880061	49880062	chr18:49880062:T:C	rs1217631	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr18	49954527	49954528	chr18:49954528:T:C	rs1557359	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr18	50051354	50051355	chr18:50051355:C:T	rs57468939	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr18	50190270	50190271	chr18:50190271:G:A	rs1619740	G	A	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr18	50765342	50765343	chr18:50765343:T:A	rs1838190	T	A	T	Sox1.mouse_HMG_4	9	1	-	10.972062758550651	4.096293625426368	TGAATTGTTATTCC
chr18	51304165	51304166	chr18:51304166:C:A	rs62094379	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr18	51623101	51623102	chr18:51623102:G:T	rs995449455	G	T	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr18	52827138	52827139	chr18:52827139:G:C	rs148510341	G	C	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr18	53427428	53427429	chr18:53427429:T:C	rs1502236	T	C	T	Sox1.mouse_HMG_4	7	1	+	7.661389529807194	7.423476690622011	TCAATTGTTATTCA
chr18	53521462	53521463	chr18:53521463:G:A	rs4453579	G	A	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr18	53710556	53710557	chr18:53710557:G:A	rs980754	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr18	53795105	53795106	chr18:53795106:A:G	rs1574925	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.629486450033709	4.264665562530702	TAAATATATATTCA
chr18	53957639	53957640	chr18:53957640:G:A	rs68015088	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr18	54112691	54112692	chr18:54112692:A:G	rs55712319	A	G	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr18	54140743	54140744	chr18:54140744:G:A	rs115155143	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr18	54425326	54425327	chr18:54425327:G:C	rs62091589	G	C	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr18	54553533	54553534	chr18:54553534:C:A	chr18:54553534:C:A	C	A	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr18	54766294	54766295	chr18:54766295:A:C	rs73960609	A	C	A	Sox1.mouse_HMG_4	9	1	+	4.4341365237725014	-2.441632609351779	TGAAAGGACAGTCA
chr18	54766298	54766299	chr18:54766299:A:C	rs73960611	A	C	A	Sox1.mouse_HMG_4	13	1	+	4.4341365237725014	0.8360549732007359	TGAAAGGACAGTCA
chr18	54823223	54823224	chr18:54823224:T:C	rs75341207	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr18	55153375	55153376	chr18:55153376:T:G	rs9953471	T	G	T	Sox1.mouse_HMG_4	0	1	+	4.316214242890393	0.7188758701187854	TAAATGACCAGTCA
chr18	55236582	55236583	chr18:55236583:T:C	rs10515969	T	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr18	55477488	55477489	chr18:55477489:G:C	rs143264374	G	C	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr18	55952674	55952675	chr18:55952675:T:C	rs2551463	T	C	t	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr18	57512326	57512327	chr18:57512327:C:T	rs12957068	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr18	57517587	57517588	chr18:57517588:C:T	rs478683	C	T	C	Sox1.mouse_HMG_4	5	1	-	4.824641414067978	5.266420636673317	TGAACGAATACTCA
chr18	57561683	57561684	chr18:57561684:G:A	rs187444728	G	A	G	Sox1.mouse_HMG_4	11	1	+	10.030787418601443	6.664526606820185	TGAATTTTAATGCA
chr18	57585754	57585755	chr18:57585755:T:C	rs73961913	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.413909326684789	-2.4688357892931805	TGTCTAGCCATTCA
chr18	57697597	57697598	chr18:57697598:G:A	rs319439	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr18	58060079	58060080	chr18:58060080:G:T	rs9965270	G	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr18	58097231	58097232	chr18:58097232:T:A	rs8092818	T	A	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr18	58102102	58102103	chr18:58102103:A:T	rs485027	A	T	T	Sox1.mouse_HMG_4	4	1	-	8.096483107636917	1.2504011251383365	TAAATAAACATTCA
chr18	58272019	58272020	chr18:58272020:C:A	rs6566957	C	A	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr18	58339448	58339449	chr18:58339449:G:A	rs190389272	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr18	58542934	58542935	chr18:58542935:T:C	rs74565065	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr18	58669978	58669979	chr18:58669979:C:T	rs149374631	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr18	58949113	58949114	chr18:58949114:G:A	rs4496254	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr18	58977393	58977394	chr18:58977394:C:T	rs75554723	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr18	59047697	59047698	chr18:59047698:C:G	rs7240772	C	G	G	Sox1.mouse_HMG_4	8	1	+	4.7943350169505505	-1.2676578888469676	TGAAAAAACAGTCA
chr18	59085694	59085695	chr18:59085695:G:C	rs1033071	G	C	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr18	59087545	59087546	chr18:59087546:A:G	rs72958351	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr18	59469583	59469584	chr18:59469584:G:C	rs1216440169	G	C	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr18	59606157	59606158	chr18:59606158:A:T	rs17780683	A	T	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr18	59656557	59656558	chr18:59656558:A:G	rs6567111	A	G	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr18	59712531	59712532	chr18:59712532:G:A	rs72971707	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr18	59780183	59780184	chr18:59780184:A:G	rs1791356	A	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr18	59863677	59863678	chr18:59863678:T:G	rs9953126	T	G	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr18	59929447	59929448	chr18:59929448:C:T	rs17066403	C	T	c	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr18	59983955	59983956	chr18:59983956:A:G	rs4245284	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr18	60419224	60419225	chr18:60419225:G:T	rs1943229	G	T	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr18	60733744	60733745	chr18:60733745:G:A	rs9967277	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr18	61589741	61589742	chr18:61589742:G:A	rs8084945	G	A	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr18	62185772	62185773	chr18:62185773:T:G	rs17069528	T	G	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr18	62588324	62588325	chr18:62588325:C:T	rs373841861	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr18	62650364	62650365	chr18:62650365:C:G	rs9945178	C	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr18	62690615	62690616	chr18:62690616:C:T	rs148465095	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr18	62915668	62915669	chr18:62915669:T:A	rs683109	T	A	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr18	63082427	63082428	chr18:63082428:G:A	rs7239684	G	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr18	63149602	63149603	chr18:63149603:G:A	rs12457170	G	A	A	Sox1.mouse_HMG_4	1	1	+	7.853778121918232	0.9450233426030097	CGAATAATCATGCA
chr18	63421753	63421754	chr18:63421754:G:T	rs138512484	G	T	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr18	63488344	63488345	chr18:63488345:C:T	rs11659461	C	T	t	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr18	63570773	63570774	chr18:63570774:T:G	rs58946992	T	G	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr18	63571011	63571012	chr18:63571012:C:T	rs118133699	C	T	C	Sox1.mouse_HMG_4	1	1	-	9.898166162169113	2.989411382853895	GGAATTGGCATTCA
chr18	64237726	64237727	chr18:64237727:G:T	rs8095279	G	T	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr18	65423840	65423841	chr18:65423841:C:T	rs674161	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr18	65423848	65423849	chr18:65423849:T:A	rs557814	T	A	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr18	66012101	66012102	chr18:66012102:G:A	rs9960355	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr18	66168923	66168924	chr18:66168924:C:A	rs7235805	C	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr18	66587435	66587436	chr18:66587436:A:C	rs17738107	A	C	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr18	66587471	66587472	chr18:66587472:G:A	rs17738113	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr18	66729689	66729690	chr18:66729690:C:T	rs76249747	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr18	67081489	67081490	chr18:67081490:A:C	rs12607459	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr18	67661715	67661716	chr18:67661716:T:C	rs4891624	T	C	C	Sox1.mouse_HMG_4	5	1	-	8.850647695145717	8.408868472540378	TGAACAGACATGCA
chr18	67771482	67771483	chr18:67771483:T:C	rs9319738	T	C	C	Sox1.mouse_HMG_4	10	1	+	13.920584529937624	7.044815396813345	TGAATATAAATTCA
chr18	68178461	68178462	chr18:68178462:A:T	rs80265723	A	T	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr18	68178497	68178498	chr18:68178498:G:A	rs17078642	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr18	68372653	68372654	chr18:68372654:T:C	rs17078970	T	C	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr18	68403015	68403016	chr18:68403016:G:A	rs79052395	G	A	G	Sox1.mouse_HMG_4	7	1	-	4.455053197256575	4.692966036441758	TGAATCACTACTCA
chr18	68448854	68448855	chr18:68448855:C:T	chr18:68448855:C:T	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr18	68738905	68738906	chr18:68738906:C:G	rs117493385	C	G	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr18	68830568	68830569	chr18:68830569:T:C	rs117286491	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr18	68929134	68929135	chr18:68929135:T:A	rs111717511	T	A	T	Sox1.mouse_HMG_4	9	1	-	5.074832174895271	-1.8009369582290093	TCAACATCCATTCA
chr18	69173025	69173026	chr18:69173026:T:C	rs34173341	T	C	T	Sox1.mouse_HMG_4	13	1	-	5.204699361944253	-1.678045754033716	TGAACATTTTTTCA
chr18	69526216	69526217	chr18:69526217:G:C	rs9950126	G	C	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr18	70452469	70452470	chr18:70452470:T:G	rs12454310	T	G	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr18	70457181	70457182	chr18:70457182:G:A	rs144964973	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr18	70470427	70470428	chr18:70470428:C:A	rs576665465	C	A	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr18	71038311	71038312	chr18:71038312:G:A	rs1942200	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr18	71189717	71189718	chr18:71189718:C:T	rs10163641	C	T	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr18	71456887	71456888	chr18:71456888:A:G	rs673737	A	G	G	Sox1.mouse_HMG_4	11	1	-	10.700895792058006	3.8204808778704376	TGAATTTCCAGTCA
chr18	71765383	71765384	chr18:71765384:A:G	rs62100635	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr18	72812256	72812257	chr18:72812257:T:C	rs11877598	T	C	t	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr18	73136232	73136233	chr18:73136233:A:T	rs1875671	A	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr18	73654886	73654887	chr18:73654887:G:A	rs7236283	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr18	74367500	74367501	chr18:74367501:A:G	rs8082977	A	G	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr18	74807433	74807434	chr18:74807434:G:A	rs10083919	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr18	74867478	74867479	chr18:74867479:A:G	rs72977458	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr18	74898491	74898492	chr18:74898492:T:C	rs9950061	T	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr18	75086954	75086955	chr18:75086955:T:C	rs8090127	T	C	T	Sox1.mouse_HMG_4	10	1	+	10.072660138980789	3.196891005856509	TGAATATGTATGCA
chr18	75358691	75358692	chr18:75358692:A:G	rs111317146	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.436175972425203	4.19826313324002	GGAATGGTCCTTCA
chr18	75358717	75358718	chr18:75358718:A:T	rs961756	A	T	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr18	75491587	75491588	chr18:75491588:C:T	rs17211623	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr18	75582169	75582170	chr18:75582170:T:A	rs66526964	T	A	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr18	75924645	75924646	chr18:75924646:A:G	rs17058549	A	G	A	Sox1.mouse_HMG_4	3	1	+	4.672857920603578	-2.214561989200618	TGGACTTTCATTCA
chr18	76349198	76349199	chr18:76349199:G:A	rs79315926	G	A	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr18	76522134	76522135	chr18:76522135:C:T	rs77625370	C	T	C	Sox1.mouse_HMG_4	5	1	-	7.0707689950623385	7.512548217667676	TGAATGCTCATTTA
chr18	76580612	76580613	chr18:76580613:C:G	rs4891170	C	G	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr18	76671203	76671204	chr18:76671204:T:C	rs17565109	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr18	76687735	76687736	chr18:76687736:T:G	rs67923159	T	G	T	Sox1.mouse_HMG_4	6	1	-	5.4074519350004575	4.559272960484211	TGAACAAACACTCA
chr18	76875501	76875502	chr18:76875502:G:A	rs2276210	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.073584687184229	7.795601506011628	TGAACGGCCTTTCA
chr18	76996102	76996103	chr18:76996103:T:C	rs12456341	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr18	77038932	77038933	chr18:77038933:G:A	rs73486813	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr18	77039992	77039993	chr18:77039993:G:A	rs62106763	G	A	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr18	77060283	77060284	chr18:77060284:C:A	rs685975	C	A	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr18	77081378	77081379	chr18:77081379:G:A	rs1674716	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr18	77440162	77440163	chr18:77440163:A:G	rs12961057	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr18	77577089	77577090	chr18:77577090:T:A	rs1402663	T	A	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr18	77636084	77636085	chr18:77636085:G:T	rs71362751	G	T	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr18	77659428	77659429	chr18:77659429:G:A	rs489081	G	A	G	Sox1.mouse_HMG_4	7	1	-	4.227207106065564	4.465119945250747	TGAAGGGCCATTCC
chr18	77864873	77864874	chr18:77864874:G:A	rs113565654	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr18	78074718	78074719	chr18:78074719:T:C	rs12961075	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr18	78105371	78105372	chr18:78105372:T:C	rs4541161	T	C	T	Sox1.mouse_HMG_4	3	1	-	8.178063837064206	1.2906439272600079	TCAATAGACATTCA
chr18	78200234	78200235	chr18:78200235:T:C	rs8094431	T	C	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr18	78293870	78293871	chr18:78293871:C:T	rs75746628	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr18	78810291	78810292	chr18:78810292:T:C	rs12961960	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr18	78810292	78810293	chr18:78810293:G:A	rs62098902	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr18	78839220	78839221	chr18:78839221:T:C	rs28608668	T	C	-	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr18	78858762	78858763	chr18:78858763:G:T	rs114261933	G	T	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr18	79454031	79454032	chr18:79454032:G:C	rs55748815	G	C	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr18	79491940	79491941	chr18:79491941:T:C	rs1667672	T	C	C	Sox1.mouse_HMG_4	0	1	+	5.371126754677393	1.4695770075027925	TGAACAGCTGTGCA
chr18	79741316	79741317	chr18:79741317:G:A	rs571096	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr18	79778031	79778032	chr18:79778032:C:T	rs919631359	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr18	79778037	79778038	chr18:79778038:A:G	rs8088611	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr18	79791334	79791335	chr18:79791335:G:A	rs550404875	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr18	79791338	79791339	chr18:79791339:A:C	rs12455605	A	C	C	Sox1.mouse_HMG_4	2	1	+	7.384849560523233	0.4760947812080143	TGAATGTCCAGGCA
chr18	80184150	80184151	chr18:80184151:G:A	rs34929854	G	A	A	Sox1.mouse_HMG_4	1	1	+	6.671089836460435	-0.23766494285478523	TGAAGTCACATTCA
chr19	397686	397687	chr19:397687:T:C	rs117526052	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr19	428604	428605	chr19:428605:A:G	rs139938203	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr19	787805	787806	chr19:787806:T:C	rs116844973	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	787843	787844	chr19:787844:T:C	rs181485006	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr19	898967	898968	chr19:898968:C:T	rs2930884	C	T	C	Sox1.mouse_HMG_4	5	1	-	4.521801443368695	4.963580665974034	TGAACGTCTGTGCA
chr19	921501	921502	chr19:921502:T:G	rs73507533	T	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr19	921528	921529	chr19:921529:C:A	rs73507535	C	A	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr19	1098809	1098810	chr19:1098810:T:A	rs11668388	T	A	T	Sox1.mouse_HMG_4	9	1	-	4.446762404650438	-2.4290067284738432	GGAACACTTATGCA
chr19	1113610	1113611	chr19:1113611:C:T	rs200987793	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr19	1192491	1192492	chr19:1192492:T:G	rs137949997	T	G	T	Sox1.mouse_HMG_4	10	1	+	5.774915692722602	2.410094805219595	TGAATAGTGATGCA
chr19	1192505	1192506	chr19:1192506:G:A	rs7252287	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr19	1246308	1246309	chr19:1246309:C:T	rs141597614	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr19	1361579	1361580	chr19:1361580:A:G	rs1259794682	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr19	1415445	1415446	chr19:1415446:G:A	rs377574292	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr19	1415450	1415451	chr19:1415451:T:C	chr19:1415451:T:C	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr19	2094805	2094806	chr19:2094806:G:A	rs373668642	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr19	2255819	2255820	chr19:2255820:T:C	rs2865074	T	C	t	Sox1.mouse_HMG_4	4	1	+	3.8000318965451623	1.0780150777177644	TGACTTGCCATTCT
chr19	2507297	2507298	chr19:2507298:A:G	rs76307882	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr19	2594555	2594556	chr19:2594556:G:A	rs73918049	G	A	-	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr19	2619144	2619145	chr19:2619145:C:A	rs7257500	C	A	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr19	2627562	2627563	chr19:2627563:C:T	rs74631976	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr19	2627586	2627587	chr19:2627587:C:T	rs140308402	C	T	C	Sox1.mouse_HMG_4	12	1	+	3.2959370608398597	-3.6128177184753607	TGAATTCCCAGTCT
chr19	2656160	2656161	chr19:2656161:C:A	rs144317312	C	A	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr19	2783766	2783767	chr19:2783767:C:T	rs73522750	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.133212085733252	3.992180787406112	CTAATATTCATTCA
chr19	2949903	2949904	chr19:2949904:C:T	rs115212474	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	3054531	3054532	chr19:3054532:T:C	rs444949	T	C	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr19	3054568	3054569	chr19:3054569:C:T	rs4807391	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr19	3098144	3098145	chr19:3098145:A:G	rs308038	A	G	G	Sox1.mouse_HMG_4	3	1	+	9.013224216964149	2.1258043071599513	TGAATGTGAATGCA
chr19	3152102	3152103	chr19:3152103:C:T	rs11882719	C	T	T	Sox1.mouse_HMG_4	0	1	+	6.11033299600155	10.01188274317615	CGAATAGGAGTTCA
chr19	3156324	3156325	chr19:3156325:A:T	rs453820	A	T	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr19	3346592	3346593	chr19:3346593:C:T	rs77234374	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr19	3346639	3346640	chr19:3346640:T:G	rs147503499	T	G	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr19	3571657	3571658	chr19:3571658:G:A	rs146155003	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr19	3986408	3986409	chr19:3986409:A:T	rs10421759	A	T	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr19	4211258	4211259	chr19:4211259:C:T	rs10402917	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr19	4648164	4648165	chr19:4648165:C:T	rs111414686	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	4670744	4670745	chr19:4670745:G:T	rs757453419	G	T	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr19	4768904	4768905	chr19:4768905:A:G	rs879564	A	G	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr19	4768935	4768936	chr19:4768936:G:A	rs879563	G	A	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr19	4801157	4801158	chr19:4801158:G:C	rs75404926	G	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr19	4975552	4975553	chr19:4975553:G:A	rs8099963	G	A	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr19	5034433	5034434	chr19:5034434:G:A	rs10422470	G	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr19	5034450	5034451	chr19:5034451:A:G	rs144624302	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr19	5847988	5847989	chr19:5847989:T:C	rs2608894	T	C	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr19	5947859	5947860	chr19:5947860:A:G	rs10407413	A	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr19	5954150	5954151	chr19:5954151:A:C	rs4807826	A	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr19	6057134	6057135	chr19:6057135:G:A	chr19:6057135:G:A	G	A	G	Sox1.mouse_HMG_4	5	1	+	11.841441845519398	12.283221068124739	TGAACGAACATTCA
chr19	6175593	6175594	chr19:6175594:G:A	rs79405277	G	A	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr19	6558057	6558058	chr19:6558058:C:G	rs11878528	C	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr19	6827098	6827099	chr19:6827099:A:G	rs4807102	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr19	6942482	6942483	chr19:6942483:T:C	rs7259423	T	C	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr19	7052784	7052785	chr19:7052785:G:C	rs10427101	G	C	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr19	7072904	7072905	chr19:7072905:G:A	rs72986657	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr19	7224419	7224420	chr19:7224420:G:A	rs7248104	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr19	7346562	7346563	chr19:7346563:A:G	rs56251393	A	G	-	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr19	7415190	7415191	chr19:7415191:A:G	rs12986081	A	G	a	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr19	7472001	7472002	chr19:7472002:C:T	rs141372539	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr19	7546279	7546280	chr19:7546280:G:A	rs7250686	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr19	7691201	7691202	chr19:7691202:T:C	rs66508756	T	C	N	Sox1.mouse_HMG_4	10	1	+	4.3014739416660355	-2.574295191458245	TGACCAGAAATGCA
chr19	7738209	7738210	chr19:7738210:C:T	rs7248227	C	T	c	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr19	7738220	7738221	chr19:7738221:G:T	rs144215989	G	T	g	Sox1.mouse_HMG_4	5	1	-	3.2351073478787455	6.79482285148471	TGACTCCCCATTCC
chr19	7744440	7744441	chr19:7744441:C:T	rs8105572	C	T	c	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	7744491	7744492	chr19:7744492:T:C	rs57889796	T	C	N	Sox1.mouse_HMG_4	3	1	-	4.222130512052558	-2.665289397751642	TGCATGGACATGCA
chr19	7799961	7799962	chr19:7799962:A:G	rs944171634	A	G	a	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr19	7799987	7799988	chr19:7799988:G:A	rs561987858	G	A	-	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr19	8039314	8039315	chr19:8039315:G:A	rs12610554	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr19	8103514	8103515	chr19:8103515:G:A	rs4289098	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr19	8161235	8161236	chr19:8161236:A:G	rs7507522	A	G	G	Sox1.mouse_HMG_4	3	1	+	4.561817531681948	-2.32560237812225	GGAAGAAACATTCA
chr19	8256005	8256006	chr19:8256006:T:G	rs2306199	T	G	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	8390427	8390428	chr19:8390428:G:A	rs2913976	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr19	8390461	8390462	chr19:8390462:G:T	rs10426087	G	T	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr19	8390468	8390469	chr19:8390469:G:T	rs200386569	G	T	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr19	8434674	8434675	chr19:8434675:C:T	rs7252644	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr19	8517515	8517516	chr19:8517516:C:G	rs78566755	C	G	-	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	8673696	8673697	chr19:8673697:A:C	rs2967682	A	C	c	Sox1.mouse_HMG_4	3	1	+	7.445385502663015	3.6548997469217763	TGAATAGAAATTCT
chr19	9077035	9077036	chr19:9077036:C:T	rs183202759	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr19	9538026	9538027	chr19:9538027:A:C	rs73923611	A	C	A	Sox1.mouse_HMG_4	4	1	-	7.646551807110309	0.800469824611729	AGAATAATAATTCA
chr19	9594981	9594982	chr19:9594982:G:A	rs12985332	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr19	10018331	10018332	chr19:10018332:A:T	chr19:10018332:A:T	A	T	A	Sox1.mouse_HMG_4	8	1	+	3.848047129891407	4.465703829302711	GGAATAGAAATTCT
chr19	10074541	10074542	chr19:10074542:T:G	rs10421372	T	G	T	Sox1.mouse_HMG_4	7	1	-	5.10312551947224	5.129456764834061	TGAATATAGATGCA
chr19	10197990	10197991	chr19:10197991:C:G	rs150293645	C	G	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	10380180	10380181	chr19:10380181:A:G	rs12720219	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr19	10380183	10380184	chr19:10380184:G:T	rs1282974770	G	T	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr19	10427857	10427858	chr19:10427858:G:A	rs4539725	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr19	10566367	10566368	chr19:10566368:A:G	chr19:10566368:A:G	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr19	10569426	10569427	chr19:10569427:A:G	rs3760648	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.276514089889606	-2.606231026088363	CTAATAGACATTCA
chr19	10753199	10753200	chr19:10753200:A:G	rs145787602	A	G	a	Sox1.mouse_HMG_4	10	1	-	4.161814036924287	-2.713955096199994	CTAATAGCTATTCA
chr19	10966985	10966986	chr19:10966986:G:A	rs73011369	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr19	11092737	11092738	chr19:11092738:A:G	rs17249169	A	G	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr19	11478887	11478888	chr19:11478888:T:C	rs112910203	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.128765328598262	-2.7470038045260194	TGAGTGGCTATGCA
chr19	11862666	11862667	chr19:11862667:A:G	rs148768387	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr19	12365697	12365698	chr19:12365698:A:T	rs540829002	A	T	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr19	12365722	12365723	chr19:12365723:G:A	rs10407325	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr19	12615467	12615468	chr19:12615468:G:A	rs7255858	G	A	a	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr19	12636860	12636861	chr19:12636861:G:A	rs76241476	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.3842823936236135	-2.524472385691607	GGAAGGATCATTCA
chr19	12651968	12651969	chr19:12651969:T:C	rs17476839	T	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr19	13150458	13150459	chr19:13150459:G:T	rs571627914	G	T	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr19	13150466	13150467	chr19:13150467:G:C	rs62109928	G	C	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr19	13301472	13301473	chr19:13301473:A:G	rs184537472	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr19	13484301	13484302	chr19:13484302:C:T	rs61076736	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr19	13637945	13637946	chr19:13637946:G:A	rs10401591	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr19	13637953	13637954	chr19:13637954:G:A	rs10401594	G	A	A	Sox1.mouse_HMG_4	5	1	+	3.556614892656027	3.998394115261365	TGCATGCTCATGCA
chr19	13744383	13744384	chr19:13744384:G:A	rs414530	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	13785304	13785305	chr19:13785305:A:G	rs551794482	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr19	13900119	13900120	chr19:13900120:A:G	rs7507907	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr19	14023649	14023650	chr19:14023650:G:A	rs1323122157	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.46755191351252	-2.4412028658027003	AGAACAAGCATTCA
chr19	14023672	14023673	chr19:14023673:A:G	rs537005067	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr19	14229110	14229111	chr19:14229111:C:T	rs75593627	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr19	15298835	15298836	chr19:15298836:G:A	rs56825447	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr19	15469478	15469479	chr19:15469479:G:A	rs36020076	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr19	15469509	15469510	chr19:15469510:G:A	chr19:15469510:G:A	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr19	15561870	15561871	chr19:15561871:T:A	rs79200295	T	A	t	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr19	15783067	15783068	chr19:15783068:T:A	rs4350676	T	A	.	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr19	15839598	15839599	chr19:15839599:T:C	rs1541388	T	C	t	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	15839623	15839624	chr19:15839624:C:T	rs1541389	C	T	t	Sox1.mouse_HMG_4	1	1	-	3.4901724942856847	-3.418582285029535	TGAACTTGCTTTCA
chr19	16096829	16096830	chr19:16096830:T:C	rs16981110	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr19	16118851	16118852	chr19:16118852:A:T	rs186281288	A	T	A	Sox1.mouse_HMG_4	9	1	+	6.238863206173287	-0.636905926950994	TGACTTCCCATGCA
chr19	16238439	16238440	chr19:16238440:T:C	rs8100939	T	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr19	16297831	16297832	chr19:16297832:G:T	rs375146652	G	T	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	16342121	16342122	chr19:16342122:G:A	rs371560889	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr19	16361059	16361060	chr19:16361060:G:C	rs8113386	G	C	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr19	16435315	16435316	chr19:16435316:A:G	rs936312	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.527955030343763	0.6264052831691624	TGAAGAGCTATTCC
chr19	16499284	16499285	chr19:16499285:T:A	rs58842944	T	A	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr19	16625280	16625281	chr19:16625281:A:G	rs3786604	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr19	17278838	17278839	chr19:17278839:C:T	rs10406920	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr19	17391494	17391495	chr19:17391495:C:T	rs75793747	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr19	17393186	17393187	chr19:17393187:C:T	rs4808629	C	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr19	17522971	17522972	chr19:17522972:G:A	rs34452747	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr19	17603174	17603175	chr19:17603175:A:C	rs11668867	A	C	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr19	17803674	17803675	chr19:17803675:G:A	rs7256058	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr19	18231238	18231239	chr19:18231239:G:A	rs142063338	G	A	g	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr19	18290331	18290332	chr19:18290332:A:C	rs11673466	A	C	A	Sox1.mouse_HMG_4	11	1	-	4.526287314293272	1.012133211886962	TCAACACACATTCA
chr19	18654852	18654853	chr19:18654853:C:T	rs12974777	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr19	18940455	18940456	chr19:18940456:G:C	rs3787043	G	C	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr19	18940490	18940491	chr19:18940491:A:G	rs960468992	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr19	18975106	18975107	chr19:18975107:A:G	rs113104285	A	G	a	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr19	18989977	18989978	chr19:18989978:C:A	rs4808172	C	A	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr19	19181864	19181865	chr19:19181865:T:C	rs2239370	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr19	19611166	19611167	chr19:19611167:C:T	rs12610191	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr19	19645852	19645853	chr19:19645853:T:C	rs10405234	T	C	C	Sox1.mouse_HMG_4	8	1	+	4.1169102138782705	4.25794151220541	TGAATGTTTGGGCA
chr19	19663075	19663076	chr19:19663076:C:T	rs112396664	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr19	19663113	19663114	chr19:19663114:G:A	rs884480	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr19	19753296	19753297	chr19:19753297:A:G	rs73923023	A	G	N	Sox1.mouse_HMG_4	0	1	-	3.831455989468986	-0.07009375770561399	TGAAGACCTAGTCA
chr19	20432792	20432793	chr19:20432793:G:C	rs12972599	G	C	.	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr19	20747636	20747637	chr19:20747637:C:G	rs59417151	C	G	-	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr19	20870744	20870745	chr19:20870745:G:A	rs146559270	G	A	-	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr19	21256943	21256944	chr19:21256944:T:C	rs644423	T	C	-	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr19	21432656	21432657	chr19:21432657:T:A	rs2914648	T	A	N	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr19	21439162	21439163	chr19:21439163:A:G	rs1846712	A	G	G	Sox1.mouse_HMG_4	4	1	-	4.171931887878198	1.4499150690507998	GGAATGGACTTTCA
chr19	21478234	21478235	chr19:21478235:G:C	rs2650808	G	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr19	21569506	21569507	chr19:21569507:T:A	rs73929328	T	A	.	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr19	21569540	21569541	chr19:21569541:A:G	rs113001757	A	G	.	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr19	21758563	21758564	chr19:21758564:G:A	rs7254091	G	A	g	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr19	21961564	21961565	chr19:21961565:T:C	rs11878866	T	C	N	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr19	22527148	22527149	chr19:22527149:G:T	rs72620599	G	T	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr19	23384894	23384895	chr19:23384895:T:C	rs61738904	T	C	t	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr19	23621238	23621239	chr19:23621239:C:T	rs699653	C	T	T	Sox1.mouse_HMG_4	6	1	-	4.261748592680323	4.180167863253033	TGACTCGTTATTCC
chr19	23852222	23852223	chr19:23852223:G:A	rs115399385	G	A	g	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr19	23985283	23985284	chr19:23985284:C:T	rs116437397	C	T	c	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr19	23985285	23985286	chr19:23985286:A:T	rs7250712	A	T	a	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr19	27369849	27369850	chr19:27369850:G:A	rs11667735	G	A	.	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr19	27894860	27894861	chr19:27894861:G:C	rs73035818	G	C	G	Sox1.mouse_HMG_4	8	1	-	3.8104087975434684	-2.25158410825405	GGAACATGCATTCC
chr19	28152293	28152294	chr19:28152294:A:G	rs1834975	A	G	A	Sox1.mouse_HMG_4	4	1	+	3.6754485260340584	3.6754485260340584	TGAAAGGAAAGTCA
chr19	28794444	28794445	chr19:28794445:T:C	rs918430	T	C	T	Sox1.mouse_HMG_4	6	1	-	4.762919060460292	4.844499789887583	TGAACTAACATACA
chr19	29013958	29013959	chr19:29013959:C:T	rs144302006	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr19	29017296	29017297	chr19:29017297:A:G	rs79373862	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr19	29063643	29063644	chr19:29063644:C:G	rs57447387	C	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr19	29177433	29177434	chr19:29177434:A:C	rs7259101	A	C	A	Sox1.mouse_HMG_4	13	1	+	5.3673696040192445	1.7692880534474789	TGAATATTGATGCA
chr19	29181349	29181350	chr19:29181350:G:A	rs7251941	G	A	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr19	29245354	29245355	chr19:29245355:G:A	rs183913074	G	A	G	Sox1.mouse_HMG_4	6	1	-	3.7145982928519583	4.236811908092136	TGAATCCACATTCG
chr19	29270514	29270515	chr19:29270515:C:T	rs74983087	C	T	C	Sox1.mouse_HMG_4	11	1	-	6.813192906055955	3.446932094274696	GGAATTTCTATGCA
chr19	29273917	29273918	chr19:29273918:C:T	rs73925507	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr19	29303714	29303715	chr19:29303715:T:C	rs2111518	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr19	29382894	29382895	chr19:29382895:C:A	rs8110676	C	A	C	Sox1.mouse_HMG_4	0	1	-	8.391820415850548	11.989158788622156	GGAACTGTCATTCA
chr19	29409148	29409149	chr19:29409149:C:G	chr19:29409149:C:G	C	G	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	29436888	29436889	chr19:29436889:G:A	rs533338301	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr19	29443917	29443918	chr19:29443918:C:T	rs11672292	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.4135958810937845	-2.4951588982214368	TGAACACATATACA
chr19	29672106	29672107	chr19:29672107:C:A	rs73024197	C	A	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr19	29786339	29786340	chr19:29786340:C:T	rs28432909	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr19	30030108	30030109	chr19:30030109:C:T	rs1422130	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr19	30172914	30172915	chr19:30172915:G:A	rs150060081	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr19	30348849	30348850	chr19:30348850:G:A	rs117389314	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr19	30518631	30518632	chr19:30518632:A:G	rs73024820	A	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr19	30521191	30521192	chr19:30521192:G:A	rs2866974	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr19	30594154	30594155	chr19:30594155:A:G	rs117963118	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr19	30628329	30628330	chr19:30628330:T:C	rs16964470	T	C	T	Sox1.mouse_HMG_4	3	1	-	3.401128806383384	-3.4862911034208155	TGAAGGAGCAGTCA
chr19	30628348	30628349	chr19:30628349:C:A	rs11667231	C	A	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr19	30741474	30741475	chr19:30741475:G:C	rs12462355	G	C	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr19	30855621	30855622	chr19:30855622:C:T	rs34107	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr19	30855627	30855628	chr19:30855628:G:A	rs10425253	G	A	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr19	30882880	30882881	chr19:30882881:A:G	rs979489	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr19	30959486	30959487	chr19:30959487:A:C	rs278171	A	C	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr19	31016022	31016023	chr19:31016023:C:G	rs10404008	C	G	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr19	31059164	31059165	chr19:31059165:A:C	rs142810175	A	C	A	Sox1.mouse_HMG_4	0	1	-	3.9052217369194535	0.30788336414784445	TGCATAGAAATGCA
chr19	31293954	31293955	chr19:31293955:A:G	rs78576746	A	G	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr19	31328923	31328924	chr19:31328924:C:A	rs10425645	C	A	c	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	31408260	31408261	chr19:31408261:G:A	rs7258693	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr19	31545935	31545936	chr19:31545936:C:T	rs2194199	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr19	31702316	31702317	chr19:31702317:C:T	rs11669542	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr19	31784200	31784201	chr19:31784201:T:C	rs11084599	T	C	T	Sox1.mouse_HMG_4	6	1	-	4.626327924639147	4.707908654066437	TGAACCACAAGTCA
chr19	32103915	32103916	chr19:32103916:T:C	rs8105292	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr19	32459371	32459372	chr19:32459372:A:G	rs138523113	A	G	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	32613398	32613399	chr19:32613399:A:G	rs369859	A	G	G	Sox1.mouse_HMG_4	9	1	+	7.361770293086453	3.996949405583446	GGAATTGCCATGCA
chr19	32615202	32615203	chr19:32615203:T:C	rs410616	T	C	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr19	32896866	32896867	chr19:32896867:T:A	rs58634595	T	A	T	Sox1.mouse_HMG_4	4	1	+	4.579982286492441	-2.26609969600614	TAAATAGACATTCC
chr19	33072101	33072102	chr19:33072102:A:C	rs59036315	A	C	a	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr19	33286129	33286130	chr19:33286130:G:A	rs73024203	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr19	33461047	33461048	chr19:33461048:T:C	rs10422643	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr19	33507376	33507377	chr19:33507377:A:C	rs111857903	A	C	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr19	33570205	33570206	chr19:33570206:T:C	rs891034	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr19	33640705	33640706	chr19:33640706:G:A	rs908660229	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.732613742221487	-2.1761410370937337	TGAAGATTCAGTCA
chr19	33694578	33694579	chr19:33694579:T:C	rs11084747	T	C	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	33939389	33939390	chr19:33939390:C:G	rs7258059	C	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr19	33955429	33955430	chr19:33955430:G:A	chr19:33955430:G:A	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr19	34099713	34099714	chr19:34099714:G:A	rs524232	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr19	34191653	34191654	chr19:34191654:G:C	rs944728	G	C	C	Sox1.mouse_HMG_4	1	1	+	5.618956282628596	-1.2897984966866238	TGACTCTGAATTCA
chr19	34329253	34329254	chr19:34329254:C:T	rs189030	C	T	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr19	34974992	34974993	chr19:34974993:G:A	rs1862274	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr19	35174611	35174612	chr19:35174612:A:C	rs11670649	A	C	a	Sox1.mouse_HMG_4	4	1	-	6.386720098289281	-0.45936188420930035	CGAATGGAAATTCC
chr19	35501135	35501136	chr19:35501136:A:G	rs2293698	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr19	35597043	35597044	chr19:35597044:T:C	rs1544332	T	C	t	Sox1.mouse_HMG_4	13	1	-	7.529856284901935	0.6471111689239653	TGACCACCTATTCA
chr19	35664137	35664138	chr19:35664138:T:G	rs73599286	T	G	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr19	35664170	35664171	chr19:35664171:G:A	rs57180990	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr19	35776639	35776640	chr19:35776640:G:T	rs10403796	G	T	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr19	35952554	35952555	chr19:35952555:G:C	rs74258171	G	C	C	Sox1.mouse_HMG_4	1	1	+	3.8864002208163964	-3.0223545584988223	TGTACTCACATTCA
chr19	36081513	36081514	chr19:36081514:T:G	rs75230537	T	G	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr19	37816449	37816450	chr19:37816450:A:G	rs73623327	A	G	a	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr19	38014305	38014306	chr19:38014306:C:T	rs140149479	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr19	38389251	38389252	chr19:38389252:T:C	rs1007693918	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr19	38719952	38719953	chr19:38719953:G:A	rs62119115	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr19	38786330	38786331	chr19:38786331:T:C	rs7255028	T	C	C	Sox1.mouse_HMG_4	2	1	-	6.752964695374682	-0.15579008394053795	TGAGTTCTTATTCA
chr19	38838564	38838565	chr19:38838565:C:T	rs45510794	C	T	C	Sox1.mouse_HMG_4	3	1	+	3.920329164058063	0.8233950099951055	TGACTGACCAGGCA
chr19	38838582	38838583	chr19:38838583:T:A	rs141474374	T	A	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr19	38882706	38882707	chr19:38882707:A:T	rs57981781	A	T	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr19	39064636	39064637	chr19:39064637:A:T	rs2569365	A	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	39411698	39411699	chr19:39411699:A:G	rs35686858	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.227860343760998	0.32631059658639794	TGAACAAGTAGTCC
chr19	39475662	39475663	chr19:39475663:C:T	rs35297410	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr19	39673512	39673513	chr19:39673513:A:G	rs10414838	A	G	-	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr19	39833891	39833892	chr19:39833892:A:C	chr19:39833892:A:C	A	C	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr19	39911754	39911755	chr19:39911755:T:C	rs56238646	T	C	.	Sox1.mouse_HMG_4	3	1	-	4.408613836056573	-2.4788060737476236	TCAACTTACATTCA
chr19	39941113	39941114	chr19:39941114:C:T	rs11879271	C	T	.	Sox1.mouse_HMG_4	0	1	-	7.399301498582782	4.1323977047039975	GGAATAATAATGCA
chr19	39959658	39959659	chr19:39959659:G:C	rs374838558	G	C	.	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr19	40160016	40160017	chr19:40160017:G:A	rs474481	G	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr19	40160039	40160040	chr19:40160040:G:A	rs57484453	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr19	40160049	40160050	chr19:40160050:T:C	rs621232	T	C	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr19	40910354	40910355	chr19:40910355:T:G	rs3852873	T	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr19	41308991	41308992	chr19:41308992:C:A	rs2217656	C	A	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr19	41547185	41547186	chr19:41547186:T:C	rs758768	T	C	-	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr19	41588727	41588728	chr19:41588728:G:C	rs7260023	G	C	-	Sox1.mouse_HMG_4	8	1	-	4.101134947124643	-1.9608579586728752	AGAATGAACATTCC
chr19	41746887	41746888	chr19:41746888:G:C	rs73932065	G	C	g	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr19	41774382	41774383	chr19:41774383:T:A	rs6508997	T	A	N	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr19	42082092	42082093	chr19:42082093:T:C	rs10414815	T	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr19	42306016	42306017	chr19:42306017:G:A	rs147161018	G	A	G	Sox1.mouse_HMG_4	0	1	-	6.404426503827751	10.30597625100235	CGACTGTATATTCA
chr19	42306028	42306029	chr19:42306029:A:G	rs1676217	A	G	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr19	42548289	42548290	chr19:42548290:G:A	rs10423291	G	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr19	42831779	42831780	chr19:42831780:T:C	rs1989986	T	C	N	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr19	42900775	42900776	chr19:42900776:A:T	rs148627067	A	T	-	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr19	43162544	43162545	chr19:43162545:T:G	rs2024097	T	G	.	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr19	43306699	43306700	chr19:43306700:C:G	rs2007528	C	G	.	Sox1.mouse_HMG_4	1	1	-	6.103947947544614	-0.8048068317706056	TGAATGCCAAGGCA
chr19	43430260	43430261	chr19:43430261:T:C	rs79455829	T	C	t	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr19	43432858	43432859	chr19:43432859:T:C	rs2599470	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr19	43752228	43752229	chr19:43752229:T:G	rs10423765	T	G	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr19	43785365	43785366	chr19:43785366:G:A	rs4802200	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr19	43792733	43792734	chr19:43792734:A:G	rs7250952	A	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr19	44540844	44540845	chr19:44540845:G:C	rs1625502	G	C	G	Sox1.mouse_HMG_4	4	1	-	3.8113284558387086	-0.312736707832473	GGAACTGGCAGTCA
chr19	44644691	44644692	chr19:44644692:G:T	rs150985779	G	T	G	Sox1.mouse_HMG_4	12	1	-	4.194314098654827	-2.7144406806603936	TGAATGGCCAGGCC
chr19	44756956	44756957	chr19:44756957:G:A	rs2927456	G	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr19	44857966	44857967	chr19:44857967:G:A	rs440277	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.128765328598262	-2.7799894507169602	TGATTGGCTATGCA
chr19	45117254	45117255	chr19:45117255:G:T	rs113405869	G	T	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr19	45117258	45117259	chr19:45117259:C:G	rs10419255	C	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr19	45360773	45360774	chr19:45360774:A:G	rs62112764	A	G	G	Sox1.mouse_HMG_4	4	1	-	4.291938817313027	1.5699219984856276	GGAATGGTTAGGCA
chr19	45451834	45451835	chr19:45451835:A:G	rs10422633	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr19	45478293	45478294	chr19:45478294:A:T	rs112545864	A	T	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr19	45479020	45479021	chr19:45479021:A:G	rs569148667	A	G	A	Sox1.mouse_HMG_4	13	1	+	3.6882562150074385	-3.194488900970531	TGATTCGGCATTCA
chr19	45479521	45479522	chr19:45479522:T:G	rs6509215	T	G	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr19	45922393	45922394	chr19:45922394:A:G	rs10422605	A	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	46009258	46009259	chr19:46009259:A:G	rs759623	A	G	G	Sox1.mouse_HMG_4	10	1	-	7.426005576370853	0.550236443246571	TGAATATATATGCC
chr19	46126267	46126268	chr19:46126268:T:C	rs73574604	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.833997334768897	2.1119805159414984	TGAATCATCTTTCA
chr19	46371664	46371665	chr19:46371665:T:C	rs1978308	T	C	T	Sox1.mouse_HMG_4	6	1	-	4.237218306942472	4.318799036369762	TGTATAATAAGTCA
chr19	46523145	46523146	chr19:46523146:G:C	rs61407316	G	C	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr19	46603006	46603007	chr19:46603007:G:C	rs11672644	G	C	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr19	46603011	46603012	chr19:46603012:C:T	rs147851969	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr19	46714327	46714328	chr19:46714328:C:G	rs938690703	C	G	C	Sox1.mouse_HMG_4	12	1	+	4.089607980650752	-2.8191467986644687	TGAATGAACACTCC
chr19	46714329	46714330	chr19:46714330:C:T	rs62134788	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr19	46718299	46718300	chr19:46718300:C:G	rs313839	C	G	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr19	46979344	46979345	chr19:46979345:T:C	rs62136805	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.078700381770992	0.7138794942679862	GGAGTGAACATTCA
chr19	47035369	47035370	chr19:47035370:G:A	rs76212998	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr19	47035413	47035414	chr19:47035414:C:T	rs112292977	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr19	47104982	47104983	chr19:47104983:C:T	rs374338785	C	T	C	Sox1.mouse_HMG_4	0	1	-	3.797536366659368	0.5306325727805856	GGGATTTTCATTCA
chr19	47159458	47159459	chr19:47159459:G:C	rs309182	G	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr19	48035246	48035247	chr19:48035247:A:C	rs62129115	A	C	c	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr19	48054218	48054219	chr19:48054219:C:T	rs11083911	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr19	48054219	48054220	chr19:48054220:G:A	rs372297402	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr19	48108640	48108641	chr19:48108641:A:G	rs368958	A	G	G	Sox1.mouse_HMG_4	5	1	-	6.671089836460435	3.7512614263313484	TGAAGTCACATTCA
chr19	48194524	48194525	chr19:48194525:T:C	rs12463216	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr19	48250174	48250175	chr19:48250175:A:C	rs7248574	A	C	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr19	48332990	48332991	chr19:48332991:G:A	rs376775352	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr19	48333015	48333016	chr19:48333016:T:C	rs368889848	T	C	T	Sox1.mouse_HMG_4	2	1	-	5.515363909789569	-1.3933908695256518	TGAACAGCCAATCA
chr19	48549523	48549524	chr19:48549524:A:C	rs1313903073	A	C	a	Sox1.mouse_HMG_4	4	1	+	4.306948873983253	8.431014037654435	TGACAATTCATTCA
chr19	48878107	48878108	chr19:48878108:A:G	rs10416475	A	G	g	Sox1.mouse_HMG_4	10	1	-	6.500371387507594	-0.37539774561668726	TGAATTCATTTTCA
chr19	49095752	49095753	chr19:49095753:T:C	rs7253574	T	C	C	Sox1.mouse_HMG_4	7	1	+	4.188726011345467	3.9508131721602844	TGAACTCTTGGTCA
chr19	49222229	49222230	chr19:49222230:T:C	rs3848548	T	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr19	49380580	49380581	chr19:49380581:A:G	rs11881817	A	G	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr19	49516171	49516172	chr19:49516172:C:T	chr19:49516172:C:T	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr19	49686917	49686918	chr19:49686918:C:T	rs74633762	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr19	49874499	49874500	chr19:49874500:C:T	rs4802634	C	T	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr19	49917413	49917414	chr19:49917414:C:A	rs1152239	C	A	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr19	49937301	49937302	chr19:49937302:T:C	rs283533	T	C	C	Sox1.mouse_HMG_4	13	1	-	6.517956000509881	-0.36478911546808845	TGAATACAAATACA
chr19	50487183	50487184	chr19:50487184:C:T	rs548781381	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr19	50783958	50783959	chr19:50783959:C:T	rs57365146	C	T	c	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr19	50896674	50896675	chr19:50896675:G:T	rs1701937	G	T	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr19	50932998	50932999	chr19:50932999:T:G	rs1701910	T	G	G	Sox1.mouse_HMG_4	11	1	+	5.074832174895271	1.5606780724889606	TCAACATCCATTCA
chr19	51080035	51080036	chr19:51080036:A:G	chr19:51080036:A:G	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr19	51193142	51193143	chr19:51193143:G:C	rs7255167	G	C	-	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr19	51479383	51479384	chr19:51479384:A:T	rs16982732	A	T	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr19	51651183	51651184	chr19:51651184:G:T	rs59073346	G	T	G	Sox1.mouse_HMG_4	1	1	+	3.810322380045796	-3.0984323992694263	AGAATTTACAGTCA
chr19	51657511	51657512	chr19:51657512:A:C	rs73052830	A	C	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr19	51735578	51735579	chr19:51735579:A:G	rs10422751	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr19	51796631	51796632	chr19:51796632:A:G	rs4802867	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr19	51927272	51927273	chr19:51927273:A:G	chr19:51927273:A:G	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr19	52190868	52190869	chr19:52190869:T:C	rs574572830	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr19	52397592	52397593	chr19:52397593:G:A	rs11672854	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr19	52512875	52512876	chr19:52512876:G:A	rs161930	G	A	N	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr19	52535752	52535753	chr19:52535753:T:A	rs145003278	T	A	t	Sox1.mouse_HMG_4	9	1	-	3.860103111806942	-3.0156660213173376	GGAACGGGCATGCA
chr19	52661487	52661488	chr19:52661488:G:T	rs11882437	G	T	g	Sox1.mouse_HMG_4	12	1	-	4.345923966562732	-2.5628308127524884	TGAACATCAAGGCA
chr19	52722519	52722520	chr19:52722520:G:A	rs73576380	G	A	g	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr19	53004524	53004525	chr19:53004525:A:C	rs12610677	A	C	a	Sox1.mouse_HMG_4	2	1	+	5.453843963073023	-1.4549108162421975	TGACTTCAAATGCA
chr19	53044592	53044593	chr19:53044593:T:C	rs6509714	T	C	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr19	53044636	53044637	chr19:53044637:T:G	rs6509715	T	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr19	53390814	53390815	chr19:53390815:G:A	rs8111882	G	A	g	Sox1.mouse_HMG_4	9	1	-	3.9338567271506735	3.9338567271506735	CGAATTGTCCTTCA
chr19	53435491	53435492	chr19:53435492:C:T	rs73043387	C	T	c	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr19	53569502	53569503	chr19:53569503:C:T	rs3746304	C	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr19	53569527	53569528	chr19:53569528:T:C	rs3746303	T	C	T	Sox1.mouse_HMG_4	10	1	+	6.956779098177286	0.08100996505300362	TGAATGATAATGCC
chr19	53589367	53589368	chr19:53589368:T:C	rs10406516	T	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr19	53745585	53745586	chr19:53745586:C:A	rs4803175	C	A	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr19	54020520	54020521	chr19:54020521:C:T	rs115770507	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr19	54020534	54020535	chr19:54020535:G:A	rs55789308	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr19	54224894	54224895	chr19:54224895:A:G	rs3859534	A	G	N	Sox1.mouse_HMG_4	10	1	-	4.557429567031607	-2.318339566092674	TGAACTACCATGCC
chr19	54224922	54224923	chr19:54224923:C:T	rs11670894	C	T	c	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr19	54574870	54574871	chr19:54574871:C:T	rs149722559	C	T	c	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr19	54915226	54915227	chr19:54915227:C:G	rs9789251	C	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr19	55063538	55063539	chr19:55063539:G:A	rs1654459	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr19	55234644	55234645	chr19:55234645:C:T	rs7508606	C	T	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr19	55305796	55305797	chr19:55305797:A:G	rs77968045	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr19	55305802	55305803	chr19:55305803:C:T	rs11879441	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr19	55389730	55389731	chr19:55389731:T:C	rs10425596	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr19	55527328	55527329	chr19:55527329:A:G	rs12463198	A	G	-	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr19	55832941	55832942	chr19:55832942:A:G	rs35259835	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr19	55890332	55890333	chr19:55890333:T:C	rs34145083	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr19	56027873	56027874	chr19:56027874:C:T	rs397977	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr19	56314920	56314921	chr19:56314921:A:G	rs945259471	A	G	A	Sox1.mouse_HMG_4	6	1	+	6.335137438375824	6.416718167803115	TGAACTAGAATTCC
chr19	56369251	56369252	chr19:56369252:C:T	rs2288859	C	T	C	Sox1.mouse_HMG_4	6	1	+	11.056482109479889	11.578695724720067	TGAATACTCAGTCA
chr19	56377080	56377081	chr19:56377081:A:G	rs2304124	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr19	56377084	56377085	chr19:56377085:A:C	rs2304125	A	C	A	Sox1.mouse_HMG_4	3	1	+	4.1506443053634	0.36015854962216065	TCAACTCTCATTCA
chr19	56808848	56808849	chr19:56808849:T:C	rs10401139	T	C	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr19	57039012	57039013	chr19:57039013:T:C	rs11881964	T	C	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr19	57334406	57334407	chr19:57334407:T:C	rs7250886	T	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr19	57350713	57350714	chr19:57350714:C:T	rs117015855	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr19	57747392	57747393	chr19:57747393:G:A	rs145163515	G	A	G	Sox1.mouse_HMG_4	13	1	-	3.8293355868581127	0.544672021451909	TGAATACACGGTCC
chr19	57747413	57747414	chr19:57747414:A:G	rs754699079	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr19	58099191	58099192	chr19:58099192:C:A	rs1019490	C	A	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr19	58099203	58099204	chr19:58099204:T:C	rs145683281	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr19	58282229	58282230	chr19:58282230:A:G	rs12986027	A	G	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr19	58387968	58387969	chr19:58387969:T:G	rs76738658	T	G	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr19	58387974	58387975	chr19:58387975:A:G	rs1529959	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr19	58552959	58552960	chr19:58552960:C:T	rs10414125	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	133964	133965	chr2:133965:A:T	rs62116740	A	T	a	Sox1.mouse_HMG_4	7	1	-	4.846573089777611	4.582329005230606	TGAATAATCATGTA
chr2	199143	199144	chr2:199144:G:A	rs10171965	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	883889	883890	chr2:883890:G:A	rs150391320	G	A	g	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	930359	930360	chr2:930360:T:C	rs13015835	T	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	1049796	1049797	chr2:1049797:C:T	rs187870224	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	1355945	1355946	chr2:1355946:T:A	rs4558630	T	A	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	1363808	1363809	chr2:1363809:T:C	rs1182406668	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	1363822	1363823	chr2:1363823:T:C	rs4456742	T	C	C	Sox1.mouse_HMG_4	10	1	-	4.615314651421546	8.12626289704282	TGAATAAACAAGCA
chr2	2147545	2147546	chr2:2147546:T:G	rs76197190	T	G	T	Sox1.mouse_HMG_4	9	1	-	8.99998091004902	2.1242117769247404	TGAACAGACAGTCA
chr2	2158559	2158560	chr2:2158560:C:T	rs77246738	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	2392647	2392648	chr2:2392648:C:T	rs17039643	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	2447664	2447665	chr2:2447665:G:A	rs1858409	G	A	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr2	2469393	2469394	chr2:2469394:T:C	rs12616875	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	2613974	2613975	chr2:2613975:T:C	rs7589644	T	C	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	2614465	2614466	chr2:2614466:A:G	rs1031350	A	G	A	Sox1.mouse_HMG_4	6	1	+	4.6528647885582615	4.734445517985552	TGAACTACTAATCA
chr2	2938824	2938825	chr2:2938825:G:A	rs151095361	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	3059194	3059195	chr2:3059195:T:C	rs62119796	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	3066598	3066599	chr2:3066599:G:A	rs6709030	G	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	3294226	3294227	chr2:3294227:C:T	rs115551302	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	3499537	3499538	chr2:3499538:T:C	rs4624417	T	C	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	3587647	3587648	chr2:3587648:A:C	rs76598413	A	C	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	3752003	3752004	chr2:3752004:C:G	rs357971	C	G	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	3918849	3918850	chr2:3918850:C:T	rs2313469	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	4406078	4406079	chr2:4406079:G:A	rs12465767	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.580725464292599	-2.3280293150226212	GTAATAGACATTCA
chr2	4435435	4435436	chr2:4435436:G:A	rs59569594	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	5684025	5684026	chr2:5684026:C:G	rs6734206	C	G	G	Sox1.mouse_HMG_4	4	1	+	4.062840807669641	-0.061224356001540636	TCAACGGGCATTCA
chr2	5723021	5723022	chr2:5723022:A:G	rs2722557	A	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	5730808	5730809	chr2:5730809:C:T	rs16864081	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr2	5981173	5981174	chr2:5981174:G:A	rs6731466	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	6165348	6165349	chr2:6165349:G:A	rs10193584	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	6290705	6290706	chr2:6290706:A:G	rs1031268	A	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	6424277	6424278	chr2:6424278:G:A	rs6745308	G	A	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	6578438	6578439	chr2:6578439:G:A	rs7571756	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	6578441	6578442	chr2:6578442:C:T	rs13393033	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	6701197	6701198	chr2:6701198:C:A	rs307973	C	A	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	6946232	6946233	chr2:6946233:C:T	rs12692330	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	7018100	7018101	chr2:7018101:A:T	rs309310	A	T	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	7332216	7332217	chr2:7332217:G:A	rs12619252	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	7706935	7706936	chr2:7706936:T:C	rs13003823	T	C	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	7939407	7939408	chr2:7939408:C:T	rs72777245	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	8087456	8087457	chr2:8087457:T:C	rs67480711	T	C	C	Sox1.mouse_HMG_4	11	1	+	3.9724872877961266	-2.9079276263914426	TGAAGACCCAGTCA
chr2	8325000	8325001	chr2:8325001:C:T	rs56045903	C	T	c	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	8413420	8413421	chr2:8413421:C:A	rs117425447	C	A	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	8431346	8431347	chr2:8431347:G:A	rs2630720	G	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	8434156	8434157	chr2:8434157:T:C	rs2630718	T	C	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	8457553	8457554	chr2:8457554:G:A	rs201743072	G	A	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	8639613	8639614	chr2:8639614:T:C	rs7575162	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	9031170	9031171	chr2:9031171:C:A	rs114643517	C	A	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	9100149	9100150	chr2:9100150:A:G	rs56249990	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	9150194	9150195	chr2:9150195:A:G	rs1344185	A	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	9205258	9205259	chr2:9205259:T:C	rs6747946	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr2	9321430	9321431	chr2:9321431:C:T	rs11686872	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	9351456	9351457	chr2:9351457:C:T	rs7600712	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr2	9557242	9557243	chr2:9557243:A:C	rs1524668	A	C	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	9640614	9640615	chr2:9640615:C:T	rs1534043	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	9845540	9845541	chr2:9845541:T:C	rs2245344	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.752964695374682	2.851414948200083	TGATTTCTTATTCA
chr2	9877302	9877303	chr2:9877303:G:C	rs72782634	G	C	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	9919762	9919763	chr2:9919763:A:G	rs200399688	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	9992281	9992282	chr2:9992282:T:C	rs35950483	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	10038821	10038822	chr2:10038822:T:C	rs10182936	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.171931887878198	1.4499150690507998	GGAATGGACACTCA
chr2	10132262	10132263	chr2:10132263:A:G	rs13392622	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr2	10179528	10179529	chr2:10179529:A:G	rs6719295	A	G	a	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	10252850	10252851	chr2:10252851:A:C	rs7580449	A	C	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	10252876	10252877	chr2:10252877:T:C	rs10209877	T	C	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	10403880	10403881	chr2:10403881:G:T	rs62130187	G	T	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	10513633	10513634	chr2:10513634:A:G	rs141032986	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	10527622	10527623	chr2:10527623:G:A	rs2540275	G	A	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	10622679	10622680	chr2:10622680:T:G	chr2:10622680:T:G	T	G	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	10709185	10709186	chr2:10709186:C:T	rs35978327	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr2	10910111	10910112	chr2:10910112:C:T	rs78688982	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	10953274	10953275	chr2:10953275:T:C	rs10202936	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	11710458	11710459	chr2:11710459:A:G	rs79030667	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	11863532	11863533	chr2:11863533:G:T	rs10193112	G	T	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	11909669	11909670	chr2:11909670:A:T	rs1052411250	A	T	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	12055655	12055656	chr2:12055656:G:C	rs41417950	G	C	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	12059091	12059092	chr2:12059092:T:C	rs7562854	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	12120976	12120977	chr2:12120977:G:C	rs13024745	G	C	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	12170935	12170936	chr2:12170936:G:A	rs13006226	G	A	G	Sox1.mouse_HMG_4	12	1	-	6.834159856338361	-0.07459492297685988	TGAATTGCAATCCA
chr2	12173812	12173813	chr2:12173813:A:G	rs10173068	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	12205132	12205133	chr2:12205133:C:A	rs12692471	C	A	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	12400738	12400739	chr2:12400739:G:T	rs4668758	G	T	A	Sox1.mouse_HMG_4	9	1	+	4.845939714165834	1.3349914685445594	TGAACTGACGTGCA
chr2	12672034	12672035	chr2:12672035:A:C	rs146304426	A	C	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	12764848	12764849	chr2:12764849:C:T	rs73914137	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr2	13468336	13468337	chr2:13468337:T:C	rs72771739	T	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	13468359	13468360	chr2:13468360:G:A	rs34454514	G	A	G	Sox1.mouse_HMG_4	10	1	+	10.93880863124319	7.427860385621916	TGAATTTTCAGTCA
chr2	13578745	13578746	chr2:13578746:T:C	rs13401545	T	C	C	Sox1.mouse_HMG_4	2	1	-	7.457547536247616	0.5487927569323958	TGAAGTTTCATTCA
chr2	14776241	14776242	chr2:14776242:G:A	rs2571636	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	14863728	14863729	chr2:14863729:G:A	rs1518795	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	14991873	14991874	chr2:14991874:C:T	rs12621463	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.835406474325274	0.9266516950100534	TGAATTGTCTTTCA
chr2	15142093	15142094	chr2:15142094:G:A	chr2:15142094:G:A	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	15637304	15637305	chr2:15637305:G:A	rs807629	G	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	15672452	15672453	chr2:15672453:G:A	rs10929380	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	15716247	15716248	chr2:15716248:A:G	rs6746441	A	G	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	15955767	15955768	chr2:15955768:A:G	rs9789773	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	16061752	16061753	chr2:16061753:T:A	rs6719669	T	A	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	16251599	16251600	chr2:16251600:C:G	rs55982637	C	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	16276743	16276744	chr2:16276744:G:T	rs340763	G	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	16276761	16276762	chr2:16276762:A:G	rs340764	A	G	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	16311929	16311930	chr2:16311930:C:T	rs73217658	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	16543936	16543937	chr2:16543937:C:T	rs4240232	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr2	16630525	16630526	chr2:16630526:T:C	rs10198461	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	16645231	16645232	chr2:16645232:C:T	rs72777952	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	16679512	16679513	chr2:16679513:T:C	rs13431111	T	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	16971285	16971286	chr2:16971286:G:A	rs59948779	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.313638849499632	7.551551688684815	GGAACTACAATTCA
chr2	17231814	17231815	chr2:17231815:C:T	rs10171949	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	17271547	17271548	chr2:17271548:A:T	rs189944083	A	T	a	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	17309793	17309794	chr2:17309794:C:T	rs111309465	C	T	C	Sox1.mouse_HMG_4	10	1	-	7.315634059663291	3.804685814042017	TGAACTCCTAGTCA
chr2	17331777	17331778	chr2:17331778:G:A	rs56196336	G	A	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr2	17539654	17539655	chr2:17539655:G:A	rs7596935	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	18084706	18084707	chr2:18084707:C:G	rs7583138	C	G	C	Sox1.mouse_HMG_4	1	1	-	4.476540718884493	-2.432214060430728	AGAATATCCAGTCA
chr2	18084717	18084718	chr2:18084718:T:A	rs7599611	T	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	18262840	18262841	chr2:18262841:A:G	rs6746954	A	G	A	Sox1.mouse_HMG_4	3	1	+	4.561817531681948	-2.32560237812225	GGAAGAAACATTCA
chr2	18745901	18745902	chr2:18745902:T:C	rs4832452	T	C	T	Sox1.mouse_HMG_4	9	1	-	8.386248581438883	5.021427693935876	GGAACATCCATTCA
chr2	18834513	18834514	chr2:18834514:C:T	rs11892852	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	18980622	18980623	chr2:18980623:T:C	rs7580276	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.736923896703402	-2.1388452364208783	GGAATAGTTTTTCA
chr2	19099077	19099078	chr2:19099078:A:C	rs73918104	A	C	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	19204166	19204167	chr2:19204167:T:C	rs851331	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr2	19301703	19301704	chr2:19301704:G:A	rs1880960	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	19569694	19569695	chr2:19569695:G:A	rs62125176	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	19715135	19715136	chr2:19715136:C:G	rs7590830	C	G	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	19724461	19724462	chr2:19724462:T:G	rs4666543	T	G	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	19754276	19754277	chr2:19754277:G:A	rs11683563	G	A	.	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	19769594	19769595	chr2:19769595:T:C	rs13394456	T	C	T	Sox1.mouse_HMG_4	10	1	+	10.537310077845833	3.661540944721552	TGAATAGGCATTCC
chr2	19836308	19836309	chr2:19836309:C:G	rs115191584	C	G	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	19968991	19968992	chr2:19968992:G:A	rs11680554	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	20050625	20050626	chr2:20050626:G:C	rs3769763	G	C	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	20220954	20220955	chr2:20220955:C:G	rs12464428	C	G	C	Sox1.mouse_HMG_4	3	1	+	4.477138401931161	1.3802042478682022	TGACCAGCAAGTCA
chr2	20220970	20220971	chr2:20220971:A:C	rs4666298	A	C	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	20374979	20374980	chr2:20374980:C:T	rs568273409	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	20374980	20374981	chr2:20374981:G:A	rs73218135	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	20393487	20393488	chr2:20393488:G:C	rs58495411	G	C	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	20437167	20437168	chr2:20437168:A:G	rs115778718	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.28269489131636	0.9178740038133528	TGCATATCCATGCA
chr2	20590228	20590229	chr2:20590229:C:T	rs13431026	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	20590245	20590246	chr2:20590246:C:T	rs2882036	C	T	C	Sox1.mouse_HMG_4	0	1	+	6.281784605759654	10.183334352934255	CGAATTCTCATTCC
chr2	20652264	20652265	chr2:20652265:A:C	rs75679231	A	C	A	Sox1.mouse_HMG_4	7	1	-	4.717370533268408	3.5016994607595757	AGAACTTTCATTCA
chr2	21195024	21195025	chr2:21195025:G:C	rs79192207	G	C	g	Sox1.mouse_HMG_4	4	1	-	5.266420636673317	1.1423554730021357	TGAACAAATCTTCA
chr2	21947193	21947194	chr2:21947194:T:C	rs13401585	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	22165895	22165896	chr2:22165896:G:A	rs150930227	G	A	G	Sox1.mouse_HMG_4	6	1	+	8.33426226947501	8.252681540047721	TGAATAGTTTTTCA
chr2	22165902	22165903	chr2:22165903:A:G	rs140945638	A	G	A	Sox1.mouse_HMG_4	13	1	+	8.33426226947501	1.4515171534970408	TGAATAGTTTTTCA
chr2	22216837	22216838	chr2:22216838:A:G	rs10427307	A	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	22603879	22603880	chr2:22603880:T:C	rs936751	T	C	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	22821935	22821936	chr2:22821936:C:T	rs7605946	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	23244062	23244063	chr2:23244063:A:G	rs17044980	A	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	23394790	23394791	chr2:23394791:G:A	rs2339752	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	23421764	23421765	chr2:23421765:T:G	rs35758471	T	G	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	23487939	23487940	chr2:23487940:C:T	rs141152301	C	T	C	Sox1.mouse_HMG_4	5	1	-	6.500539201207053	6.942318423812392	GGAATGAGCATGCA
chr2	23624512	23624513	chr2:23624513:T:G	rs2339849	T	G	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	23791147	23791148	chr2:23791148:T:C	rs116029009	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.716605570063707	4.994588751236309	TGAATAGTATTTCA
chr2	24920211	24920212	chr2:24920212:C:T	rs550707705	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	25139645	25139646	chr2:25139646:T:C	rs4665765	T	C	C	Sox1.mouse_HMG_4	13	1	-	8.858949611721881	1.9762044957439118	TGAACAGATGTTCA
chr2	25714896	25714897	chr2:25714897:G:A	rs141246903	G	A	G	Sox1.mouse_HMG_4	13	1	-	6.986930312423407	3.7022667470172035	TGAACTTCAATTCC
chr2	26253071	26253072	chr2:26253072:C:T	rs34081866	C	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	26568585	26568586	chr2:26568586:A:C	rs939815	A	C	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	26586513	26586514	chr2:26586514:C:A	rs1275995	C	A	A	Sox1.mouse_HMG_4	11	1	-	6.786861660694134	10.301015763100443	GGAATTTATATGCA
chr2	26616849	26616850	chr2:26616850:G:T	rs1662979	G	T	G	Sox1.mouse_HMG_4	1	1	+	4.585551233147396	-2.323203546167824	TGAAGAGATATGCA
chr2	26617253	26617254	chr2:26617254:C:T	rs6709336	C	T	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	26617256	26617257	chr2:26617257:G:C	rs4665885	G	C	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	26665154	26665155	chr2:26665155:T:C	rs1731230	T	C	C	Sox1.mouse_HMG_4	10	1	+	4.24346538156358	-2.6323037515607	TGAGTGGACATGCA
chr2	26669539	26669540	chr2:26669540:G:T	rs112231999	G	T	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	26681478	26681479	chr2:26681479:T:C	rs113616253	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	26681508	26681509	chr2:26681509:T:C	rs73920335	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	26724409	26724410	chr2:26724410:C:T	rs145169631	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	26755536	26755537	chr2:26755537:G:C	rs73923327	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	26785062	26785063	chr2:26785063:C:G	rs13388508	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	26785063	26785064	chr2:26785064:G:A	rs574911664	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	27050945	27050946	chr2:27050946:T:C	rs11889781	T	C	T	Sox1.mouse_HMG_4	8	1	-	5.954465141961508	0.6511602339024327	CGAATGCTAAGTCA
chr2	27447498	27447499	chr2:27447499:A:G	rs143060452	A	G	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	28084923	28084924	chr2:28084924:G:A	rs12614949	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	28113933	28113934	chr2:28113934:T:C	rs59019758	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr2	28644089	28644090	chr2:28644090:T:C	chr2:28644090:T:C	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	28644120	28644121	chr2:28644121:G:T	rs6751379	G	T	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	29194079	29194080	chr2:29194080:T:C	rs12619135	T	C	T	Sox1.mouse_HMG_4	13	1	-	9.753017308579595	2.870272192601627	TGACTTCCCATTCA
chr2	29507840	29507841	chr2:29507841:T:C	rs7602452	T	C	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	29519316	29519317	chr2:29519317:A:C	rs11686046	A	C	A	Sox1.mouse_HMG_4	4	1	-	5.875738705242604	-0.970343277255977	TGAATTCAAATTCT
chr2	29527961	29527962	chr2:29527962:G:A	rs12714289	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	29529183	29529184	chr2:29529184:G:A	rs77067016	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	29629397	29629398	chr2:29629398:A:G	rs10205397	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	30048790	30048791	chr2:30048791:A:C	rs114545272	A	C	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	30048822	30048823	chr2:30048823:A:G	rs10205268	A	G	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	30070789	30070790	chr2:30070790:C:T	rs76836927	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.876209875864797	-2.0325449034504226	TGAGTAATTAGTCA
chr2	30096592	30096593	chr2:30096593:T:C	rs1000291326	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	30159743	30159744	chr2:30159744:T:C	rs3768670	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.806524910515333	-0.07622020546263641	TGAATGCACATTGA
chr2	30159746	30159747	chr2:30159747:A:G	rs3768671	A	G	A	Sox1.mouse_HMG_4	10	1	-	6.806524910515333	-0.06924422260894958	TGAATGCACATTGA
chr2	30320057	30320058	chr2:30320058:G:A	rs34258815	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	30779263	30779264	chr2:30779264:C:G	rs6754923	C	G	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr2	30949089	30949090	chr2:30949090:T:C	rs77376423	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	31031481	31031482	chr2:31031482:C:T	rs1862968	C	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	31031507	31031508	chr2:31031508:T:C	rs1862967	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.248461757414379	-2.6273073757099015	TGCATGGCCATGCA
chr2	31083406	31083407	chr2:31083407:G:A	rs1862976	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.5103026813220435	4.428721951894753	TGAATCGATAATCA
chr2	31219880	31219881	chr2:31219881:G:A	rs4952069	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	31382544	31382545	chr2:31382545:T:G	rs6720163	T	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr2	31390382	31390383	chr2:31390383:A:G	rs206849	A	G	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	32055629	32055630	chr2:32055630:T:C	rs2365555	T	C	.	Sox1.mouse_HMG_4	9	1	-	8.037032538737066	4.672211651234059	TGAATAGATATTAA
chr2	32809148	32809149	chr2:32809149:C:T	rs3769566	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	32824480	32824481	chr2:32824481:A:C	rs4952301	A	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	32824489	32824490	chr2:32824490:T:C	rs17323627	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	32849045	32849046	chr2:32849046:T:C	rs72789809	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	32871975	32871976	chr2:32871976:C:G	rs6756203	C	G	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	33077990	33077991	chr2:33077991:G:C	rs395997	G	C	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	33135488	33135489	chr2:33135489:G:A	rs4670256	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	33242912	33242913	chr2:33242913:A:G	rs182831851	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	33304058	33304059	chr2:33304059:C:A	rs6543704	C	A	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	33363742	33363743	chr2:33363743:C:T	chr2:33363743:C:T	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	33586637	33586638	chr2:33586638:T:A	rs35346181	T	A	T	Sox1.mouse_HMG_4	5	1	-	6.006255103901026	5.36636801042415	TGAATATGAAGTCC
chr2	33660982	33660983	chr2:33660983:C:T	rs57546748	C	T	c	Sox1.mouse_HMG_4	5	1	-	4.486374596599561	4.928153819204901	TCAATGGTCATGCA
chr2	33764669	33764670	chr2:33764670:T:A	rs4350722	T	A	A	Sox1.mouse_HMG_4	2	1	-	4.8201081670687	-2.08864661224652	TGAATAGTTAAGCA
chr2	33897928	33897929	chr2:33897929:A:C	rs6747131	A	C	a	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	34252370	34252371	chr2:34252371:G:A	rs13407683	G	A	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	34364931	34364932	chr2:34364932:C:T	rs10495818	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr2	34888055	34888056	chr2:34888056:A:T	rs280782	A	T	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	35305709	35305710	chr2:35305710:C:G	rs62144861	C	G	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	35410711	35410712	chr2:35410712:G:A	rs116650791	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	35410716	35410717	chr2:35410717:C:T	rs12467311	C	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	35715218	35715219	chr2:35715219:A:G	rs1518653	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr2	36353487	36353488	chr2:36353488:C:T	rs4670544	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	36428250	36428251	chr2:36428251:C:T	rs848504	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	36821114	36821115	chr2:36821115:T:A	rs78638422	T	A	T	Sox1.mouse_HMG_4	0	1	+	8.126036580915528	1.2617944142651372	TGAAGAGCTATTCA
chr2	36965351	36965352	chr2:36965352:T:C	rs3770774	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr2	37148396	37148397	chr2:37148397:G:T	rs4648156	G	T	G	Sox1.mouse_HMG_4	6	1	+	4.092620597075544	3.6850745083721863	TGAACGGGCAGGCA
chr2	37323052	37323053	chr2:37323053:T:C	rs11689794	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	37351159	37351160	chr2:37351160:G:C	rs3770751	G	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	37473619	37473620	chr2:37473620:T:G	rs78616851	T	G	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	37503839	37503840	chr2:37503840:C:G	rs2373111	C	G	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	37821925	37821926	chr2:37821926:A:G	rs11899949	A	G	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	38078906	38078907	chr2:38078907:C:T	rs34510534	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	38329670	38329671	chr2:38329671:C:G	rs2888564	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	38649882	38649883	chr2:38649883:G:A	rs542169918	G	A	g	Sox1.mouse_HMG_4	8	1	-	7.489581660350979	7.34855036202384	TGAATTAACAATCA
chr2	38651174	38651175	chr2:38651175:T:C	rs17023028	T	C	t	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	38723931	38723932	chr2:38723932:T:G	rs11124645	T	G	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	39050851	39050852	chr2:39050852:T:C	rs113295233	T	C	T	Sox1.mouse_HMG_4	4	1	+	8.442307921611212	5.720291102783812	TTAATAGTCATTCA
chr2	39413597	39413598	chr2:39413598:A:C	rs10170424	A	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	39523312	39523313	chr2:39523313:G:T	rs7594967	G	T	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	39547702	39547703	chr2:39547703:A:G	rs17023941	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	39743297	39743298	chr2:39743298:G:A	rs12991701	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr2	39838383	39838384	chr2:39838384:G:C	rs62137169	G	C	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	40118099	40118100	chr2:40118100:G:A	rs7594419	G	A	A	Sox1.mouse_HMG_4	1	1	+	6.8726611241908	-0.03609365512442175	TGTATTCTCATTCA
chr2	40193858	40193859	chr2:40193859:A:G	rs372052	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	40240587	40240588	chr2:40240588:T:C	rs62148831	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.806524910515333	-0.0808949992888659	TAAATGCACATTCA
chr2	40348857	40348858	chr2:40348858:T:C	rs563053423	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr2	40441183	40441184	chr2:40441184:T:C	rs6749800	T	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	40458358	40458359	chr2:40458359:G:C	rs55957030	G	C	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	40487615	40487616	chr2:40487616:G:T	rs13014062	G	T	T	Sox1.mouse_HMG_4	1	1	+	6.526702632869416	-0.3820521464458049	TGAATTCCTACTCA
chr2	40487829	40487830	chr2:40487830:G:C	rs35520511	G	C	G	Sox1.mouse_HMG_4	6	1	+	4.635707811502866	3.7059481075593306	TTAATGGTCAGTCA
chr2	40611222	40611223	chr2:40611223:A:G	rs80045429	A	G	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	40800570	40800571	chr2:40800571:G:C	rs7558840	G	C	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	41326891	41326892	chr2:41326892:G:C	rs6544410	G	C	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	41483725	41483726	chr2:41483726:T:C	rs17027824	T	C	T	Sox1.mouse_HMG_4	3	1	-	5.312745014080454	-1.5746748957237424	TAAACATTCATTCA
chr2	41994368	41994369	chr2:41994369:G:A	rs76889561	G	A	g	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr2	42073606	42073607	chr2:42073607:C:T	rs34311786	C	T	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr2	42147559	42147560	chr2:42147560:G:T	rs13396880	G	T	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr2	42172030	42172031	chr2:42172031:C:A	rs13030612	C	A	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	42325870	42325871	chr2:42325871:G:A	rs7588931	G	A	G	Sox1.mouse_HMG_4	12	1	-	8.185487149815378	1.2767323705001574	TGAAAAACCATTCA
chr2	43094086	43094087	chr2:43094087:A:G	rs1446571	A	G	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr2	43829538	43829539	chr2:43829539:T:C	rs4148181	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.440710708836787	0.5579655928588174	TGATTAGAAATTCA
chr2	43937146	43937147	chr2:43937147:G:A	rs77799752	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	43937341	43937342	chr2:43937342:T:A	rs4507144	T	A	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	44276058	44276059	chr2:44276059:A:G	rs1012047182	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	44450287	44450288	chr2:44450288:A:G	rs7568690	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	44479544	44479545	chr2:44479545:A:G	rs151278865	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	44479576	44479577	chr2:44479577:A:G	rs553256924	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	44620635	44620636	chr2:44620636:G:C	rs7593656	G	C	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	44620640	44620641	chr2:44620641:C:A	rs7593464	C	A	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	44678358	44678359	chr2:44678359:T:C	rs510026	T	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	44948381	44948382	chr2:44948382:A:G	rs534567	A	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	44981998	44981999	chr2:44981999:A:C	rs566941	A	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	45068207	45068208	chr2:45068208:C:T	rs62133165	C	T	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	45200083	45200084	chr2:45200084:G:A	rs571008602	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	45200090	45200091	chr2:45200091:C:T	rs7575958	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr2	45259727	45259728	chr2:45259728:A:C	rs4953216	A	C	C	Sox1.mouse_HMG_4	11	1	-	4.761835785505296	1.2476816830989854	GGAACATACATTCC
chr2	45275958	45275959	chr2:45275959:G:C	rs870576	G	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	45641303	45641304	chr2:45641304:A:C	rs614787	A	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	45969825	45969826	chr2:45969826:T:A	rs1562654	T	A	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	46094905	46094906	chr2:46094906:C:A	rs66955291	C	A	-	Sox1.mouse_HMG_4	6	1	+	6.905646770381738	7.753825744897984	TGAATTCTCAATCA
chr2	46850219	46850220	chr2:46850220:A:T	rs111899577	A	T	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	46859477	46859478	chr2:46859478:G:T	rs935379	G	T	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	46868349	46868350	chr2:46868350:G:A	rs4953434	G	A	G	Sox1.mouse_HMG_4	4	1	-	7.016818039176881	9.73883485800428	CGAACTCTTATTCA
chr2	46880878	46880879	chr2:46880879:A:G	rs142787291	A	G	a	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	46893776	46893777	chr2:46893777:C:G	rs112634825	C	G	c	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	46916237	46916238	chr2:46916238:C:T	rs535221885	C	T	C	Sox1.mouse_HMG_4	0	1	-	6.218503882170058	2.9516000882912774	GGAATTAGCATTCC
chr2	47062788	47062789	chr2:47062789:T:A	rs13392391	T	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	47062794	47062795	chr2:47062795:A:G	rs60395026	A	G	A	Sox1.mouse_HMG_4	3	1	+	8.232734947553679	1.3453150377494818	TGAATAGCCATCCA
chr2	47076955	47076956	chr2:47076956:A:G	rs17036229	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	47134839	47134840	chr2:47134840:T:C	rs145474165	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr2	47152334	47152335	chr2:47152335:T:C	rs4953470	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	47361197	47361198	chr2:47361198:C:T	rs79359733	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	47629230	47629231	chr2:47629231:G:A	rs147380134	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	47664919	47664920	chr2:47664920:C:G	rs7595562	C	G	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr2	47857750	47857751	chr2:47857751:G:A	rs77268227	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	47986564	47986565	chr2:47986565:C:T	rs75172353	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.579982286492443	-2.3287724928227798	TGAATAGACATTTC
chr2	48307158	48307159	chr2:48307159:T:C	rs148597104	T	C	T	Sox1.mouse_HMG_4	13	1	+	4.872582753114862	8.157246318521066	TGAATAATCATGCT
chr2	48312197	48312198	chr2:48312198:T:A	rs112238277	T	A	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	48318442	48318443	chr2:48318443:T:G	rs13388291	T	G	G	Sox1.mouse_HMG_4	4	1	+	4.225696764783395	-2.620385217715184	TGAATTGCCAGTCT
chr2	48530835	48530836	chr2:48530836:C:G	rs149414892	C	G	C	Sox1.mouse_HMG_4	6	1	-	4.430787013561758	3.501027309618223	TGAATGGTCATACC
chr2	48635762	48635763	chr2:48635763:C:T	rs2349099	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	49202465	49202466	chr2:49202466:T:C	rs11125226	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	49335846	49335847	chr2:49335847:A:G	rs72884850	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	49794585	49794586	chr2:49794586:G:C	rs2350705	G	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	50103347	50103348	chr2:50103348:G:A	rs10169371	G	A	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	50103371	50103372	chr2:50103372:T:C	rs10181708	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.820666262312372	1.4558453748093652	TGAAAAACCAGTCA
chr2	50168078	50168079	chr2:50168079:G:A	rs4971653	G	A	G	Sox1.mouse_HMG_4	12	1	-	6.179203666922144	-0.7295511123930762	TTAATTTGCATTCA
chr2	50208185	50208186	chr2:50208186:A:G	rs17040212	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	50425886	50425887	chr2:50425887:C:T	rs7423850	C	T	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	50820219	50820220	chr2:50820220:T:C	rs9309203	T	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	50895078	50895079	chr2:50895079:A:G	rs146906070	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	50951284	50951285	chr2:50951285:A:T	rs13029896	A	T	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	51295143	51295144	chr2:51295144:A:G	chr2:51295144:A:G	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	51295146	51295147	chr2:51295147:T:C	chr2:51295147:T:C	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	51624955	51624956	chr2:51624956:A:T	rs17862730	A	T	T	Sox1.mouse_HMG_4	0	1	-	5.482378263598629	-1.381863903051759	TGTACAGCCATTCA
chr2	51624958	51624959	chr2:51624959:C:T	rs17862731	C	T	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	51695644	51695645	chr2:51695645:A:T	rs17864583	A	T	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	51982040	51982041	chr2:51982041:A:G	rs73930641	A	G	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	51982040	51982041	chr2:51982041:A:T	chr2:51982041:A:T	A	T	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	52307050	52307051	chr2:52307051:G:T	rs12616416	G	T	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	52500799	52500800	chr2:52500800:G:C	rs62127634	G	C	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	52779058	52779059	chr2:52779059:A:G	rs1454387	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	52933963	52933964	chr2:52933964:T:C	rs1978654	T	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr2	53697285	53697286	chr2:53697286:T:C	rs11684574	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	54176891	54176892	chr2:54176892:C:G	rs78108796	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	54208868	54208869	chr2:54208869:G:A	rs1215148	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	54240925	54240926	chr2:54240926:G:A	rs843655	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	54396039	54396040	chr2:54396040:T:G	rs9677338	T	G	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr2	54397656	54397657	chr2:54397657:C:T	rs4671923	C	T	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	54397665	54397666	chr2:54397666:A:G	rs78805757	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	54528091	54528092	chr2:54528092:A:G	rs3796022	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	54855392	54855393	chr2:54855393:C:T	rs1371021	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	54900062	54900063	chr2:54900063:C:T	rs1269117640	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	54900077	54900078	chr2:54900078:G:T	rs112243857	G	T	G	Sox1.mouse_HMG_4	6	1	+	6.779488745848887	6.371942657145529	TCAATTGAAATTCA
chr2	54909175	54909176	chr2:54909176:A:C	rs75263008	A	C	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	54954755	54954756	chr2:54954756:G:A	rs10746530	G	A	A	Sox1.mouse_HMG_4	6	1	-	7.644556337867253	8.16676995310743	TGACCACACATTCA
chr2	54973901	54973902	chr2:54973902:C:T	rs2255026	C	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	55098235	55098236	chr2:55098236:C:T	rs4671239	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	55098248	55098249	chr2:55098249:T:C	rs2920875	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	55147129	55147130	chr2:55147130:A:G	rs61197615	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	55236439	55236440	chr2:55236440:A:C	rs56039135	A	C	C	Sox1.mouse_HMG_4	0	1	-	7.661389529807196	4.064051157035586	TGAATTGTTATTTA
chr2	55286601	55286602	chr2:55286602:C:T	rs6738970	C	T	C	Sox1.mouse_HMG_4	8	1	+	5.081486575724388	4.940455277397248	TGAACATACTTTCA
chr2	55771880	55771881	chr2:55771881:T:C	rs13014447	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	55863103	55863104	chr2:55863104:A:G	rs11680015	A	G	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	55888698	55888699	chr2:55888699:T:C	rs11125609	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	55949877	55949878	chr2:55949878:G:A	rs11685113	G	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	55966773	55966774	chr2:55966774:G:A	rs1432563	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	56448705	56448706	chr2:56448706:C:G	rs79961393	C	G	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	56565143	56565144	chr2:56565144:A:G	rs6735701	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	56729503	56729504	chr2:56729504:G:C	rs4672156	G	C	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	57045394	57045395	chr2:57045395:T:A	rs1429312	T	A	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	57049355	57049356	chr2:57049356:C:G	rs72809272	C	G	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	57229838	57229839	chr2:57229839:T:C	rs4330144	T	C	t	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	57229860	57229861	chr2:57229861:C:T	rs62160598	C	T	c	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	57510825	57510826	chr2:57510826:T:A	rs820955	T	A	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	57674208	57674209	chr2:57674209:G:A	rs702869	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	57674249	57674250	chr2:57674250:A:G	rs10496073	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	57675436	57675437	chr2:57675437:T:A	rs78065009	T	A	T	Sox1.mouse_HMG_4	0	1	+	6.241876463738785	-0.6223657029116068	TGAAATTGCATTCA
chr2	58503175	58503176	chr2:58503176:T:A	rs11888764	T	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	59078489	59078490	chr2:59078490:T:C	rs1016287	T	C	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	59378440	59378441	chr2:59378441:T:C	rs4432437	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	59998737	59998738	chr2:59998738:C:T	rs6545772	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr2	60306430	60306431	chr2:60306431:G:A	rs984331550	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	60322508	60322509	chr2:60322509:A:T	rs7579322	A	T	T	Sox1.mouse_HMG_4	13	1	+	6.768603254638357	-0.11414186133961213	GGAACTTGCATTCA
chr2	60356234	60356235	chr2:60356235:A:G	rs76529516	A	G	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	60434540	60434541	chr2:60434541:C:T	rs575861715	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.402447148434106	4.320866419006817	TGTATGGTCATTCC
chr2	60567881	60567882	chr2:60567882:G:C	rs356980	G	C	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	60628488	60628489	chr2:60628489:T:C	rs145370841	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.753825744897983	0.8664058350937867	TGAATTATCTTTCA
chr2	60735453	60735454	chr2:60735454:T:C	rs11692811	T	C	T	Sox1.mouse_HMG_4	3	1	-	10.130507166942634	3.243087257138434	GGAATATGCATTCA
chr2	60817455	60817456	chr2:60817456:T:C	rs79348524	T	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	60817484	60817485	chr2:60817485:C:T	rs76930637	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr2	61631953	61631954	chr2:61631954:T:C	rs6740218	T	C	C	Sox1.mouse_HMG_4	10	1	+	6.113973126452357	-0.761796006671924	TGGATTCTAATTCA
chr2	61645919	61645920	chr2:61645920:A:C	rs9941636	A	C	g	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	61701984	61701985	chr2:61701985:A:C	rs4074481	A	C	C	Sox1.mouse_HMG_4	6	1	+	5.39580115832054	4.547622183804295	TGATCAAACATTCA
chr2	61797474	61797475	chr2:61797475:C:G	rs34841562	C	G	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	62457842	62457843	chr2:62457843:C:T	rs561744334	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	63499797	63499798	chr2:63499798:C:T	rs1867849	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	63561914	63561915	chr2:63561915:G:A	rs72806027	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	64228361	64228362	chr2:64228362:C:T	rs113022880	C	T	C	Sox1.mouse_HMG_4	11	1	-	7.831280959244998	4.46502014746374	TGAATATTCATGCC
chr2	64228375	64228376	chr2:64228376:G:T	chr2:64228376:G:T	G	T	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	64228376	64228377	chr2:64228377:G:A	rs895060175	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr2	64228377	64228378	chr2:64228378:G:C	rs1011899377	G	C	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	64272388	64272389	chr2:64272389:A:G	rs2698526	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr2	64731868	64731869	chr2:64731869:T:C	rs6723003	T	C	C	Sox1.mouse_HMG_4	2	1	-	5.800950263793952	-1.1078045155212672	TGAATGCGCAGTCC
chr2	64785666	64785667	chr2:64785667:T:A	rs77429454	T	A	T	Sox1.mouse_HMG_4	2	1	-	4.761215693412521	-2.1475390859026993	TGAAAAGCTAGTCA
chr2	64791475	64791476	chr2:64791476:G:A	rs75420377	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr2	64975601	64975602	chr2:64975602:T:C	rs4581887	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	65240946	65240947	chr2:65240947:A:G	rs72892666	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	65240978	65240979	chr2:65240979:G:C	rs3771098	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	65383858	65383859	chr2:65383859:C:T	rs561037423	C	T	c	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	65459326	65459327	chr2:65459327:C:T	rs11675538	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	65557765	65557766	chr2:65557766:G:A	rs11126045	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	65630914	65630915	chr2:65630915:G:A	rs79105696	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr2	65826973	65826974	chr2:65826974:T:C	rs4082445	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	65961047	65961048	chr2:65961048:C:A	rs71411912	C	A	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	65961074	65961075	chr2:65961075:G:T	rs57708266	G	T	T	Sox1.mouse_HMG_4	6	1	-	4.790531398840277	5.638710373356522	TGTACACTCATTCA
chr2	66138131	66138132	chr2:66138132:C:G	rs6750828	C	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	66427439	66427440	chr2:66427440:A:C	rs72893247	A	C	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	66655143	66655144	chr2:66655144:A:G	rs67981426	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	67079877	67079878	chr2:67079878:G:C	rs6546278	G	C	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	67209456	67209457	chr2:67209457:C:T	rs66934253	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	67625703	67625704	chr2:67625704:A:G	rs6721459	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.397145445260191	0.5144003292822212	TTAATTGATATTCA
chr2	67670575	67670576	chr2:67670576:C:T	rs12478802	C	T	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	67719585	67719586	chr2:67719586:T:C	rs17034224	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	67836861	67836862	chr2:67836862:G:A	rs13022958	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	67852078	67852079	chr2:67852079:G:A	rs7584373	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	67966147	67966148	chr2:67966148:G:T	rs12713615	G	T	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	68281140	68281141	chr2:68281141:T:C	chr2:68281141:T:C	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	68375528	68375529	chr2:68375529:G:A	rs6546390	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	68395106	68395107	chr2:68395107:T:C	rs2165920	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	68727907	68727908	chr2:68727908:T:C	rs72893945	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	68764481	68764482	chr2:68764482:G:A	rs72830904	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.705843566794516	4.564812268467376	TGAACTTTCCTTCA
chr2	68931813	68931814	chr2:68931814:A:G	rs6735301	A	G	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr2	68931849	68931850	chr2:68931850:C:G	rs6706642	C	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	69103883	69103884	chr2:69103884:G:T	rs13424360	G	T	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	69177925	69177926	chr2:69177926:C:A	rs7583385	C	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	69646324	69646325	chr2:69646325:G:A	rs11888850	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	70067257	70067258	chr2:70067258:G:C	rs72898632	G	C	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	70132992	70132993	chr2:70132993:A:C	chr2:70132993:A:C	A	C	A	Sox1.mouse_HMG_4	9	1	+	7.156961900245793	0.2811927671215122	TAAATTTCCATTCA
chr2	70132992	70132993	chr2:70132993:A:G	rs17005364	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.156961900245793	3.7921410127427873	TAAATTTCCATTCA
chr2	70181536	70181537	chr2:70181537:G:A	rs1311824476	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	70451934	70451935	chr2:70451935:G:A	rs3771522	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	70506393	70506394	chr2:70506394:T:C	rs404420	T	C	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	70692190	70692191	chr2:70692191:G:A	rs56232445	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	70692199	70692200	chr2:70692200:G:A	rs116047305	G	A	G	Sox1.mouse_HMG_4	1	1	+	5.169381874208654	-1.739372905106566	GGAACAGACATTCC
chr2	70692212	70692213	chr2:70692213:A:G	rs2074821	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	71048543	71048544	chr2:71048544:A:G	rs6546657	A	G	.	Sox1.mouse_HMG_4	4	1	-	6.757067686367737	4.035050867540339	GGAATTGTAATTCC
chr2	71481787	71481788	chr2:71481788:C:T	rs35628632	C	T	C	Sox1.mouse_HMG_4	3	1	-	7.247971718613402	14.135391628417597	TGAGTAGGCATTCA
chr2	71530347	71530348	chr2:71530348:C:T	rs34402360	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	71576936	71576937	chr2:71576937:C:T	rs78477662	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	71759810	71759811	chr2:71759811:C:A	rs78323037	C	A	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	71783947	71783948	chr2:71783948:T:A	rs10199782	T	A	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	71802284	71802285	chr2:71802285:C:A	rs188151840	C	A	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	71894171	71894172	chr2:71894172:A:G	rs6709669	A	G	A	Sox1.mouse_HMG_4	10	1	-	10.290616564202045	3.4148474310777637	TGAATGAAAATGCA
chr2	71895702	71895703	chr2:71895703:C:A	rs72910793	C	A	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	71895741	71895742	chr2:71895742:G:C	rs188124217	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr2	72008626	72008627	chr2:72008627:A:C	rs79901993	A	C	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	72008643	72008644	chr2:72008644:G:A	rs1543165	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	72031828	72031829	chr2:72031829:T:C	rs10195394	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	72040353	72040354	chr2:72040354:T:C	rs1400683	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.639753474259054	-2.2360156588652265	GGAACTGCCATGCA
chr2	72126443	72126444	chr2:72126444:G:T	rs2041666	G	T	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr2	72166225	72166226	chr2:72166226:T:C	rs60977474	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.642481597196545	3.740931850021944	TGAAATATTATTCA
chr2	72211629	72211630	chr2:72211630:A:G	rs12466112	A	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	72766363	72766364	chr2:72766364:T:C	rs6720889	T	C	T	Sox1.mouse_HMG_4	3	1	-	8.178063837064208	1.2906439272600092	TGAATAGACATTAA
chr2	73368853	73368854	chr2:73368854:T:C	rs6728128	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	73461256	73461257	chr2:73461257:A:G	rs62151646	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.351389386212877	0.9865684987098706	GGAATGATCAGGCA
chr2	73963650	73963651	chr2:73963651:C:T	rs56386635	C	T	c	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	74092677	74092678	chr2:74092678:C:T	rs13413697	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.4205637275139065	4.279532429186766	TGACTAGACCTTCA
chr2	74316997	74316998	chr2:74316998:C:T	rs11126430	C	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	74365133	74365134	chr2:74365134:T:C	rs145857843	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	74564398	74564399	chr2:74564399:G:C	rs60699214	G	C	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	74887711	74887712	chr2:74887712:A:G	rs2171385	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	74893253	74893254	chr2:74893254:C:T	rs144549243	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	74959209	74959210	chr2:74959210:A:G	rs2287102	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	75173747	75173748	chr2:75173748:T:A	rs3771850	T	A	a	Sox1.mouse_HMG_4	7	1	-	7.803503394551787	8.067747479098792	TGAATATACTTTCA
chr2	75294750	75294751	chr2:75294751:A:G	rs75634886	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	75540560	75540561	chr2:75540561:A:G	rs11900698	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	75540582	75540583	chr2:75540583:A:G	rs2588495	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr2	75540592	75540593	chr2:75540593:A:G	rs115547076	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	75600515	75600516	chr2:75600516:C:A	rs114239037	C	A	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	75617788	75617789	chr2:75617789:G:A	rs74417556	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr2	75625651	75625652	chr2:75625652:G:T	rs13033867	G	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr2	75633822	75633823	chr2:75633823:C:T	rs6759621	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	76868120	76868121	chr2:76868121:G:A	rs115151960	G	A	G	Sox1.mouse_HMG_4	12	1	-	6.65081812788619	-0.25793665142903155	TGACTTTACATTCC
chr2	77297001	77297002	chr2:77297002:T:C	rs141773758	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	77301716	77301717	chr2:77301717:A:G	rs17013942	A	G	a	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	78120750	78120751	chr2:78120751:G:A	rs9309526	G	A	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	79948675	79948676	chr2:79948676:A:G	rs12478402	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	80256403	80256404	chr2:80256404:C:T	rs76145416	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	80734143	80734144	chr2:80734144:C:T	rs11893954	C	T	C	Sox1.mouse_HMG_4	13	1	+	4.579982286492443	1.2953187210862396	TGAATAGACATTTC
chr2	81302465	81302466	chr2:81302466:A:C	rs58018974	A	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	81675620	81675621	chr2:81675621:G:T	rs72819861	G	T	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	81787188	81787189	chr2:81787189:C:A	rs76630824	C	A	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	81960512	81960513	chr2:81960513:T:A	rs17641351	T	A	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	82006001	82006002	chr2:82006002:T:C	rs11126848	T	C	c	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr2	82089989	82089990	chr2:82089990:C:A	rs10184995	C	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	82641606	82641607	chr2:82641607:A:G	rs11126872	A	G	g	Sox1.mouse_HMG_4	9	1	+	4.128765328598262	0.7639444410952552	TGAGTGGCTATGCA
chr2	83007908	83007909	chr2:83007909:C:T	rs62148861	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	84395779	84395780	chr2:84395780:A:C	rs66687070	A	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	84925373	84925374	chr2:84925374:G:C	rs139904553	G	C	g	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	84958877	84958878	chr2:84958878:T:C	rs569704063	T	C	T	Sox1.mouse_HMG_4	0	1	+	5.682999715019218	1.781449967844618	TGAATTCGCATTCT
chr2	85215166	85215167	chr2:85215167:C:G	rs4831996	C	G	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	85420548	85420549	chr2:85420549:C:T	rs62162756	C	T	C	Sox1.mouse_HMG_4	6	1	+	10.143529384620608	10.665742999860784	TGAATGCCCATTCC
chr2	85420557	85420558	chr2:85420558:G:A	rs540282884	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	85545504	85545505	chr2:85545505:C:T	rs62165899	C	T	c	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	85545520	85545521	chr2:85545521:A:G	rs144074011	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.072072695523544	0.18932757954557466	TGAATTGTAATCCA
chr2	85741455	85741456	chr2:85741456:T:G	rs1437741	T	G	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	85763723	85763724	chr2:85763724:A:G	rs4832195	A	G	G	Sox1.mouse_HMG_4	10	1	-	6.996048138828656	0.120279005704375	TGAATCTAAGTTCA
chr2	86213630	86213631	chr2:86213631:C:T	rs59150256	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	86258010	86258011	chr2:86258011:C:G	rs4832262	C	G	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr2	86300888	86300889	chr2:86300889:A:G	rs2886899	A	G	a	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	86301960	86301961	chr2:86301961:C:G	rs4832274	C	G	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	88095070	88095071	chr2:88095071:C:T	rs2970908	C	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	88232202	88232203	chr2:88232203:C:T	rs182182011	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	88444259	88444260	chr2:88444260:G:A	rs1438903	G	A	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	88698359	88698360	chr2:88698360:C:T	rs908277	C	T	c	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	89004111	89004112	chr2:89004112:T:C	rs74210517	T	C	.	Sox1.mouse_HMG_4	6	1	-	4.670449401560549	4.752030130987838	TGAACAACAATCCA
chr2	89776297	89776298	chr2:89776298:G:A	rs1400572670	G	A	.	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	89842791	89842792	chr2:89842792:A:C	rs759885532	A	C	.	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr2	90390154	90390155	chr2:90390155:C:A	rs59876081	C	A	.	Sox1.mouse_HMG_4	5	1	+	8.112428095121569	11.672143598727533	GGAATCATCATTCA
chr2	91874673	91874674	chr2:91874674:C:T	rs113456103	C	T	.	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	95017170	95017171	chr2:95017171:G:A	rs145392098	G	A	g	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	95917088	95917089	chr2:95917089:C:G	rs72492169	C	G	c	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	96111419	96111420	chr2:96111420:T:G	rs2312955	T	G	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	96195420	96195421	chr2:96195421:C:G	rs2276650	C	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	96466776	96466777	chr2:96466777:G:A	rs61008119	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr2	96577794	96577795	chr2:96577795:C:T	rs2314109	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	96810481	96810482	chr2:96810482:A:G	rs3731941	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	96903329	96903330	chr2:96903330:C:T	rs147445712	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	97552448	97552449	chr2:97552449:C:T	rs10209395	C	T	t	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	97912425	97912426	chr2:97912426:C:T	rs79798680	C	T	C	Sox1.mouse_HMG_4	12	1	+	6.636756904771446	-0.27199787454377433	TGAATTCACATCCA
chr2	97945652	97945653	chr2:97945653:G:A	rs7588227	G	A	g	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr2	98163161	98163162	chr2:98163162:T:C	rs112049891	T	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	98537765	98537766	chr2:98537766:C:T	rs2278208	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	99607631	99607632	chr2:99607632:T:C	rs62154479	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.135612699921183	0.2598435667969017	TGAATACATATCCA
chr2	99762790	99762791	chr2:99762791:A:G	rs17023082	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	99864034	99864035	chr2:99864035:T:C	rs376265146	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	99947033	99947034	chr2:99947034:T:C	rs10165066	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	100067087	100067088	chr2:100067088:C:T	rs17023459	C	T	C	Sox1.mouse_HMG_4	1	1	-	6.448204135848322	-0.4605506434668991	CGAATTGCAGTTCA
chr2	100178744	100178745	chr2:100178745:G:A	rs11902705	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	100279779	100279780	chr2:100279780:A:G	rs13008568	A	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	100279821	100279822	chr2:100279822:G:T	rs528697404	G	T	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	100593275	100593276	chr2:100593276:G:A	rs4851343	G	A	A	Sox1.mouse_HMG_4	6	1	+	3.729594142313055	3.6480134128857653	TGAAACGGCATTCA
chr2	100980367	100980368	chr2:100980368:C:T	rs11900680	C	T	T	Sox1.mouse_HMG_4	7	1	+	6.6677339311965556	6.905646770381739	TGAATTCCCTTTCA
chr2	101306873	101306874	chr2:101306874:C:T	rs116727380	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	101399226	101399227	chr2:101399227:G:T	chr2:101399227:G:T	G	T	G	Sox1.mouse_HMG_4	6	1	-	4.552618559655094	5.40079753417134	TTAACACCCATTCA
chr2	101419297	101419298	chr2:101419298:G:T	rs958790	G	T	G	Sox1.mouse_HMG_4	12	1	-	5.197723379090565	-1.7110314002246554	TGAACATTTATTCT
chr2	101531559	101531560	chr2:101531560:A:G	rs13426360	A	G	A	Sox1.mouse_HMG_4	0	1	-	6.79182214859604	2.8902724014214405	TGACTGTATATGCA
chr2	101541172	101541173	chr2:101541173:T:C	rs66732006	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr2	101615164	101615165	chr2:101615165:T:C	rs4850984	T	C	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	101696705	101696706	chr2:101696706:G:A	rs186273179	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	101958255	101958256	chr2:101958256:A:G	rs183389699	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	101958257	101958258	chr2:101958258:C:T	rs1019033	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	102057947	102057948	chr2:102057948:C:T	rs60734582	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	102057978	102057979	chr2:102057979:T:C	rs11685537	T	C	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	102155404	102155405	chr2:102155405:G:C	rs871658	G	C	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	102589608	102589609	chr2:102589609:C:T	rs7594744	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	102735319	102735320	chr2:102735320:A:G	rs955916	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	103784478	103784479	chr2:103784479:C:A	rs192411507	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	104820217	104820218	chr2:104820218:T:A	rs78661385	T	A	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	104847921	104847922	chr2:104847922:T:C	rs72830490	T	C	T	Sox1.mouse_HMG_4	10	1	+	10.625113110878667	3.7493439777543864	TGAATCTTAATTCA
chr2	104894465	104894466	chr2:104894466:T:G	rs1430087	T	G	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr2	105391135	105391136	chr2:105391136:T:A	rs61370714	T	A	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	105520959	105520960	chr2:105520960:A:T	rs4851789	A	T	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	105554227	105554228	chr2:105554228:T:A	rs17031229	T	A	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr2	105621053	105621054	chr2:105621054:A:G	rs72627446	A	G	A	Sox1.mouse_HMG_4	10	1	-	6.0559494181645	-0.8198197149597803	TGAATGGGAGTGCA
chr2	105749396	105749397	chr2:105749397:A:T	rs73946288	A	T	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	105791251	105791252	chr2:105791252:T:C	rs714355	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	106256812	106256813	chr2:106256813:A:G	rs13012743	A	G	G	Sox1.mouse_HMG_4	10	1	-	5.235682707474286	-1.6400864256499947	TGAACCACCATGCA
chr2	106484402	106484403	chr2:106484403:A:C	rs71251056	A	C	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr2	106539056	106539057	chr2:106539057:C:T	rs149593206	C	T	N	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	106832531	106832532	chr2:106832532:C:T	rs12623034	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr2	107002225	107002226	chr2:107002226:T:C	rs79345888	T	C	T	Sox1.mouse_HMG_4	6	1	+	8.715647607565527	8.19343399232535	TGAACATTTAGTCA
chr2	107258672	107258673	chr2:107258673:G:A	rs6543498	G	A	A	Sox1.mouse_HMG_4	4	1	-	4.327805187027857	7.0498220058552565	TGACCAGCAATGCA
chr2	107436935	107436936	chr2:107436936:A:T	rs367959849	A	T	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	107462179	107462180	chr2:107462180:G:A	rs266236	G	A	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr2	107493668	107493669	chr2:107493669:T:G	rs266156	T	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	107581615	107581616	chr2:107581616:T:A	rs62158796	T	A	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	108165931	108165932	chr2:108165932:G:T	rs555966386	G	T	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	108325805	108325806	chr2:108325806:T:C	rs6542764	T	C	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	108618007	108618008	chr2:108618008:G:A	rs79570546	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	108825786	108825787	chr2:108825787:A:G	rs7559587	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	108940642	108940643	chr2:108940643:T:C	rs260711	T	C	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	109081050	109081051	chr2:109081051:C:T	rs114789037	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr2	109302461	109302462	chr2:109302462:A:G	rs10181589	A	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	109498799	109498800	chr2:109498800:G:A	rs12616439	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	109498813	109498814	chr2:109498814:A:G	rs10171282	A	G	G	Sox1.mouse_HMG_4	13	1	+	4.286543463396446	-2.5962016525815237	TGAATGGCTGGGCA
chr2	109542440	109542441	chr2:109542441:C:A	rs79198034	C	A	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	109609862	109609863	chr2:109609863:T:G	chr2:109609863:T:G	T	G	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	109616360	109616361	chr2:109616361:T:G	rs4953850	T	G	N	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	111193475	111193476	chr2:111193476:A:G	rs744531	A	G	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	111261666	111261667	chr2:111261667:T:C	rs79708772	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	111570300	111570301	chr2:111570301:G:C	rs3866183	G	C	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	111713903	111713904	chr2:111713904:T:A	rs7580929	T	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	112186005	112186006	chr2:112186006:G:A	rs4849051	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	113314469	113314470	chr2:113314470:C:T	rs72611916	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	113323532	113323533	chr2:113323533:T:G	chr2:113323533:T:G	T	G	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	113686689	113686690	chr2:113686690:T:G	rs58161498	T	G	t	Sox1.mouse_HMG_4	8	1	-	5.415142666392383	6.173830664130826	TGAATGTGAATGCC
chr2	113777030	113777031	chr2:113777031:C:G	rs72946686	C	G	c	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	113872649	113872650	chr2:113872650:A:C	rs12711790	A	C	c	Sox1.mouse_HMG_4	2	1	+	10.551562577154703	3.642807797839483	TGAATTTCCATGCA
chr2	113894656	113894657	chr2:113894657:A:G	rs1381379963	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.965672712395118	-1.9170724035828512	TGAACGAACTTTCA
chr2	114031816	114031817	chr2:114031817:A:G	rs190037447	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	115200542	115200543	chr2:115200543:G:A	rs7593121	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	116419524	116419525	chr2:116419525:T:G	rs559129904	T	G	T	Sox1.mouse_HMG_4	0	1	+	7.796527411698101	4.199189038926491	TGAATATACATTCT
chr2	117759048	117759049	chr2:117759049:C:T	rs1368674	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	117918534	117918535	chr2:117918535:T:C	rs6755016	T	C	T	Sox1.mouse_HMG_4	11	1	+	5.233434990482378	-1.6469799237051916	TGGACAAATATTCA
chr2	118054561	118054562	chr2:118054562:G:A	rs11675995	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	118130828	118130829	chr2:118130829:G:A	rs13409573	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	118444070	118444071	chr2:118444071:T:C	rs72840845	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.844226371039445	1.4794054835364374	TGAATAGTCATTTC
chr2	118531445	118531446	chr2:118531446:G:A	rs17774843	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	118698661	118698662	chr2:118698662:A:C	rs332659	A	C	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	119086980	119086981	chr2:119086981:A:G	rs6759463	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	119113655	119113656	chr2:119113656:C:A	rs12476302	C	A	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	119167114	119167115	chr2:119167115:A:G	rs4848539	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr2	119185276	119185277	chr2:119185277:A:G	rs7598853	A	G	G	Sox1.mouse_HMG_4	7	1	+	4.6722116512340595	3.720784663272232	TGGATAGATAGTCA
chr2	119366248	119366249	chr2:119366249:G:A	rs368164262	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	119366289	119366290	chr2:119366290:A:G	rs13390349	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	119432250	119432251	chr2:119432251:G:A	rs78501833	G	A	G	Sox1.mouse_HMG_4	3	1	-	4.715051241116344	1.6181170870533854	TGACCAGTAAGTCA
chr2	120239454	120239455	chr2:120239455:C:G	rs116673082	C	G	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	120255292	120255293	chr2:120255293:T:C	rs934724	T	C	C	Sox1.mouse_HMG_4	7	1	-	5.09301354219828	4.141586554236452	AGAACATACATTCA
chr2	120331160	120331161	chr2:120331161:C:A	chr2:120331161:C:A	C	A	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	120440571	120440572	chr2:120440572:G:C	rs7604844	G	C	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	120684008	120684009	chr2:120684009:G:A	rs12996527	G	A	G	Sox1.mouse_HMG_4	1	1	+	6.671646114890167	-0.23710866442505307	TGAACTCAAAGTCA
chr2	120684021	120684022	chr2:120684022:A:G	rs62167009	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	120684769	120684770	chr2:120684770:T:C	rs896500	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	120954804	120954805	chr2:120954805:C:T	rs4848661	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	120954841	120954842	chr2:120954842:G:A	rs4848662	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	121320439	121320440	chr2:121320440:G:C	rs78697701	G	C	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	122114450	122114451	chr2:122114451:A:G	rs62166951	A	G	A	Sox1.mouse_HMG_4	10	1	-	11.148890061456424	4.273120928332142	TGAACTATAATTCA
chr2	122451169	122451170	chr2:122451170:G:T	rs141851771	G	T	-	Sox1.mouse_HMG_4	7	1	+	9.77191221470259	10.987583287211422	TGAATGTGCATGCA
chr2	122482263	122482264	chr2:122482264:C:T	rs12472060	C	T	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	122663542	122663543	chr2:122663543:T:C	rs934994	T	C	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	122959772	122959773	chr2:122959773:G:A	rs2419251	G	A	N	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	123041839	123041840	chr2:123041840:G:A	rs17465431	G	A	G	Sox1.mouse_HMG_4	8	1	-	8.10703274120499	7.966001442877849	TGAATCACCGTTCA
chr2	123517775	123517776	chr2:123517776:T:C	rs17010186	T	C	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	123767155	123767156	chr2:123767156:G:A	rs11685343	G	A	G	Sox1.mouse_HMG_4	12	1	-	8.237091847030662	1.3283370677154414	TGAACTGCCATGCA
chr2	124069445	124069446	chr2:124069446:G:T	rs1213950	G	T	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	124151598	124151599	chr2:124151599:T:C	rs12615559	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	124684269	124684270	chr2:124684270:A:G	rs11676516	A	G	A	Sox1.mouse_HMG_4	7	1	+	7.803503394551788	6.852076406589958	TGAATATACACTCA
chr2	124709140	124709141	chr2:124709141:C:T	rs17393271	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	124838525	124838526	chr2:124838526:T:C	rs111298681	T	C	T	Sox1.mouse_HMG_4	11	1	+	4.68480781206091	-2.195607102126659	TGACTAGTCTTTCA
chr2	125188999	125189000	chr2:125189000:G:T	rs4375867	G	T	T	Sox1.mouse_HMG_4	3	1	-	6.797180966466866	10.587666722208105	TGACTTGTAAGTCA
chr2	125370855	125370856	chr2:125370856:C:T	rs13028050	C	T	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	126828700	126828701	chr2:126828701:A:C	rs142056831	A	C	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	126933849	126933850	chr2:126933850:A:G	rs78397007	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	127040164	127040165	chr2:127040165:G:A	rs11898274	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	127134086	127134087	chr2:127134087:T:C	rs72838284	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	127156773	127156774	chr2:127156774:G:T	rs13385169	G	T	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	127164447	127164448	chr2:127164448:C:T	rs141114492	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	127843034	127843035	chr2:127843035:T:C	rs17600636	T	C	t	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	127865068	127865069	chr2:127865069:G:A	rs1221416571	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	127886855	127886856	chr2:127886856:C:T	chr2:127886856:C:T	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	128186849	128186850	chr2:128186850:T:C	rs744265	T	C	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	128237290	128237291	chr2:128237291:T:C	rs80000468	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	128364170	128364171	chr2:128364171:G:A	rs189407269	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	128412490	128412491	chr2:128412491:C:T	rs368354045	C	T	c	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	128412508	128412509	chr2:128412509:T:A	rs148405160	T	A	T	Sox1.mouse_HMG_4	10	1	+	4.393368521353743	-2.4824006117705375	TGAACAGGTGTGCA
chr2	128491793	128491794	chr2:128491794:C:T	chr2:128491794:C:T	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	128788875	128788876	chr2:128788876:A:G	rs10175225	A	G	N	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	128924306	128924307	chr2:128924307:G:A	rs71420872	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	129263794	129263795	chr2:129263795:G:A	rs837904	G	A	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	129264489	129264490	chr2:129264490:G:A	rs76992902	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr2	129365358	129365359	chr2:129365359:A:T	rs1356425587	A	T	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	129422152	129422153	chr2:129422153:A:C	rs4662924	A	C	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	129561434	129561435	chr2:129561435:C:G	rs11683681	C	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr2	129872560	129872561	chr2:129872561:T:G	rs76518422	T	G	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	130659129	130659130	chr2:130659130:G:A	rs375313395	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	130868768	130868769	chr2:130868769:A:G	rs72855905	A	G	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	130894941	130894942	chr2:130894942:C:T	rs13395904	C	T	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	131014275	131014276	chr2:131014276:T:C	rs6748016	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	131565152	131565153	chr2:131565153:A:C	rs7607806	A	C	.	Sox1.mouse_HMG_4	2	1	+	9.186408699062765	2.2776539197475447	CGAATTTGCATTCA
chr2	132515327	132515328	chr2:132515328:A:G	rs2315595	A	G	a	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	132518452	132518453	chr2:132518453:G:A	rs13027981	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	132623598	132623599	chr2:132623599:G:A	rs145390933	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	132645859	132645860	chr2:132645860:G:A	rs10179785	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	132734902	132734903	chr2:132734903:C:T	rs13027476	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	133590709	133590710	chr2:133590710:C:T	rs1669460	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	133755590	133755591	chr2:133755591:C:T	rs7562841	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	133755646	133755647	chr2:133755647:G:A	rs960060271	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	133756049	133756050	chr2:133756050:G:A	rs1446750	G	A	G	Sox1.mouse_HMG_4	1	1	+	10.702685341231872	3.7939305619166506	TGAACACCAATTCA
chr2	133982605	133982606	chr2:133982606:G:A	rs16829881	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	134117879	134117880	chr2:134117880:C:T	rs57040785	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	134121920	134121921	chr2:134121921:A:T	rs10928479	A	T	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	134232037	134232038	chr2:134232038:C:G	rs6749983	C	G	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	134342456	134342457	chr2:134342457:C:T	rs66587353	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	134413584	134413585	chr2:134413585:C:T	rs71417506	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.563098849392774	4.422067551065635	TGAATCACCATTGA
chr2	134482752	134482753	chr2:134482753:G:A	rs494905	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	134498009	134498010	chr2:134498010:G:A	rs2014711	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	134763360	134763361	chr2:134763361:G:A	rs114786401	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	134771216	134771217	chr2:134771217:G:A	rs77422475	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	136362751	136362752	chr2:136362752:C:G	rs16833899	C	G	C	Sox1.mouse_HMG_4	12	1	+	3.818534845872742	-3.0902199334424774	AGACTTGCCATTCA
chr2	136391420	136391421	chr2:136391421:C:T	rs115860835	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	136423900	136423901	chr2:136423901:T:C	rs12615025	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	136423921	136423922	chr2:136423922:A:C	rs10175530	A	C	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	136584373	136584374	chr2:136584374:G:A	rs12691894	G	A	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	136703406	136703407	chr2:136703407:G:T	rs62159483	G	T	G	Sox1.mouse_HMG_4	4	1	-	4.587050525177422	0.4629853615062398	TGAACACTCATGCC
chr2	136864339	136864340	chr2:136864340:G:T	rs1652435	G	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	136882802	136882803	chr2:136882803:C:T	rs1529393	C	T	T	Sox1.mouse_HMG_4	7	1	-	5.932651802993119	6.8840787909549475	TGACTTTGCAGTCA
chr2	137242833	137242834	chr2:137242834:G:A	rs138115939	G	A	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	137884245	137884246	chr2:137884246:G:C	rs10200450	G	C	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr2	138072530	138072531	chr2:138072531:A:G	rs116422812	A	G	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	138403439	138403440	chr2:138403440:G:A	rs7574686	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	138474387	138474388	chr2:138474388:G:A	rs10178579	G	A	g	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	138713160	138713161	chr2:138713161:A:G	rs7601784	A	G	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	139142246	139142247	chr2:139142247:C:G	rs12469278	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	140426144	140426145	chr2:140426145:C:T	rs7371382	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	141338080	141338081	chr2:141338081:G:A	rs72846010	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	141338120	141338121	chr2:141338121:G:C	rs2714228	G	C	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	141475562	141475563	chr2:141475563:A:T	rs6429894	A	T	A	Sox1.mouse_HMG_4	2	1	+	4.217954886246826	-2.690799893068396	GGAACAGGCATTCC
chr2	142130340	142130341	chr2:142130341:C:T	rs112202892	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	142536663	142536664	chr2:142536664:T:C	rs1267131188	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr2	142605888	142605889	chr2:142605889:T:A	rs16857718	T	A	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	142899436	142899437	chr2:142899437:G:C	rs149065454	G	C	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	143231529	143231530	chr2:143231530:G:A	rs11888606	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	143253952	143253953	chr2:143253953:T:A	rs7576679	T	A	T	Sox1.mouse_HMG_4	8	1	-	7.684413608703917	8.30207030811522	TGAACATAAATGCA
chr2	143504922	143504923	chr2:143504923:T:C	rs55942602	T	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	143987360	143987361	chr2:143987361:G:A	rs73962160	G	A	G	Sox1.mouse_HMG_4	4	1	-	7.305081918953738	10.027098737781136	TGAACCTGTATTCA
chr2	144422473	144422474	chr2:144422474:C:T	rs146691237	C	T	C	Sox1.mouse_HMG_4	8	1	+	10.143529384620608	10.00249808629347	TGAATGCCCATTCC
chr2	144440127	144440128	chr2:144440128:G:A	rs762064276	G	A	G	Sox1.mouse_HMG_4	8	1	-	8.204395082426029	8.063363784098888	TAAATAGCCATTCA
chr2	144553409	144553410	chr2:144553410:G:A	rs115131221	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	145016980	145016981	chr2:145016981:A:G	rs2250162	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr2	145751789	145751790	chr2:145751790:A:G	rs7594931	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	145751804	145751805	chr2:145751805:T:C	rs753001450	T	C	T	Sox1.mouse_HMG_4	13	1	-	3.729594142313055	-3.1531509736649137	TGAAACGGCATTCA
chr2	145751824	145751825	chr2:145751825:C:T	rs58275097	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	146527255	146527256	chr2:146527256:T:C	rs10205206	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	146579493	146579494	chr2:146579494:T:G	rs62170010	T	G	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	147042629	147042630	chr2:147042630:G:A	rs6713527	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	147332484	147332485	chr2:147332485:A:T	rs34397893	A	T	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	147425097	147425098	chr2:147425098:T:C	rs12624284	T	C	T	Sox1.mouse_HMG_4	7	1	+	7.694375175998133	7.45646233681295	TGAATTGTTTTTCA
chr2	147615151	147615152	chr2:147615152:A:G	rs10204824	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	148134785	148134786	chr2:148134786:T:G	rs1375859	T	G	T	Sox1.mouse_HMG_4	11	1	+	10.818569270294706	7.304415167888396	TGAATACCCAGTCA
chr2	149030076	149030077	chr2:149030077:G:A	rs1568853	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	149171164	149171165	chr2:149171165:C:T	rs6728110	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	149329205	149329206	chr2:149329206:C:A	rs1348606859	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	149449505	149449506	chr2:149449506:T:C	rs79496905	T	C	T	Sox1.mouse_HMG_4	2	1	-	11.22489895647205	4.316144177156828	TGAACATCAATTCA
chr2	149611980	149611981	chr2:149611981:C:T	rs759438	C	T	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	149731368	149731369	chr2:149731369:A:G	rs73966181	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	150080151	150080152	chr2:150080152:A:T	rs11673805	A	T	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	150137255	150137256	chr2:150137256:G:C	rs330581	G	C	C	Sox1.mouse_HMG_4	8	1	-	4.1477273301646695	-1.9142655756328486	TGGATACTCGTTCA
chr2	150143593	150143594	chr2:150143594:A:G	rs330585	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	150259141	150259142	chr2:150259142:A:T	rs72858033	A	T	A	Sox1.mouse_HMG_4	13	1	-	7.397526582677788	14.280271698655756	TGAATACTTATTCT
chr2	150394519	150394520	chr2:150394520:A:G	rs4487089	A	G	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	150492194	150492195	chr2:150492195:G:A	rs13413624	G	A	G	Sox1.mouse_HMG_4	1	1	+	11.145973086257692	4.237218306942472	TGAATAATAAGTCA
chr2	150518783	150518784	chr2:150518784:C:T	rs7605020	C	T	T	Sox1.mouse_HMG_4	7	1	+	4.166881027987089	4.404793867172274	TGAATGACCATGTA
chr2	150974349	150974350	chr2:150974350:A:G	rs2108200	A	G	A	Sox1.mouse_HMG_4	11	1	-	7.408152021102553	0.5277371069149834	TGACTGAACAGTCA
chr2	151181421	151181422	chr2:151181422:G:A	rs35052957	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	151288077	151288078	chr2:151288078:G:A	rs534698532	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	151527398	151527399	chr2:151527399:T:C	rs2288198	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	151718902	151718903	chr2:151718903:A:G	rs4664498	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.8201081670687	4.582195327883516	TGAATAGTTCTGCA
chr2	151921670	151921671	chr2:151921671:C:T	rs6721495	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	152002118	152002119	chr2:152002119:G:A	rs11686447	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	152060287	152060288	chr2:152060288:T:G	rs6722774	T	G	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	152189939	152189940	chr2:152189940:A:G	rs113757530	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	152426519	152426520	chr2:152426520:C:T	rs34006820	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	152740037	152740038	chr2:152740038:A:G	rs35421285	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.12831578504814	0.7634948975451332	AGAACTGCAATTCA
chr2	152743234	152743235	chr2:152743235:T:C	rs16831732	T	C	T	Sox1.mouse_HMG_4	10	1	+	8.301276623284071	1.42550749015979	TTAATAGTTATTCA
chr2	152768269	152768270	chr2:152768270:A:G	rs11693628	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	152768308	152768309	chr2:152768309:G:A	rs11676293	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr2	152789901	152789902	chr2:152789902:C:A	rs16831793	C	A	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	153387683	153387684	chr2:153387684:C:T	rs11686661	C	T	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	153601805	153601806	chr2:153601806:C:A	rs1401745	C	A	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	154386154	154386155	chr2:154386155:G:A	rs799795	G	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	154447402	154447403	chr2:154447403:C:T	rs707074	C	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	155062956	155062957	chr2:155062957:T:C	rs13019836	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.467930727609334	1.1031098401063273	TGAACTTCCACTCA
chr2	155335908	155335909	chr2:155335909:T:C	rs1352080	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.733712529591147	0.8462926197869471	TGAACAAGCATTCC
chr2	156460316	156460317	chr2:156460317:G:A	rs116419733	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	157464713	157464714	chr2:157464714:G:C	rs181743053	G	C	.	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	157933279	157933280	chr2:157933280:A:G	rs72929187	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	158043843	158043844	chr2:158043844:T:C	rs142081036	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	158071638	158071639	chr2:158071639:A:T	rs10202707	A	T	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	158154095	158154096	chr2:158154096:C:T	rs10197184	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	158586609	158586610	chr2:158586610:C:T	rs719932	C	T	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	158730342	158730343	chr2:158730343:G:A	rs905674290	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	158932171	158932172	chr2:158932172:C:G	rs971962379	C	G	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	158932172	158932173	chr2:158932173:A:C	rs1522697	A	C	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	159132078	159132079	chr2:159132079:C:T	rs11904329	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	159149817	159149818	chr2:159149818:G:A	rs73002937	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	159735698	159735699	chr2:159735699:A:G	rs6432557	A	G	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	159893729	159893730	chr2:159893730:G:A	rs78775433	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	159997668	159997669	chr2:159997669:A:T	rs57751799	A	T	A	Sox1.mouse_HMG_4	10	1	-	5.080404009306936	-1.7953651238173463	TGAACTGTCATTGA
chr2	159998409	159998410	chr2:159998410:T:G	rs141154923	T	G	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	159998429	159998430	chr2:159998430:T:C	rs73967978	T	C	T	Sox1.mouse_HMG_4	6	1	-	7.519825089406413	7.601405818833702	TGAACTAAAGTTCA
chr2	160051780	160051781	chr2:160051781:T:G	rs6719686	T	G	T	Sox1.mouse_HMG_4	9	1	-	4.6713330474090675	-2.204436085715213	TGAAGAACCATGCA
chr2	160126548	160126549	chr2:160126549:G:C	rs2305819	G	C	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	160405612	160405613	chr2:160405613:T:C	rs1051756284	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr2	160405628	160405629	chr2:160405629:T:C	rs74810688	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	160429708	160429709	chr2:160429709:C:A	rs13431440	C	A	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	160433825	160433826	chr2:160433826:A:C	rs62177359	A	C	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	160473354	160473355	chr2:160473355:T:C	rs7426143	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	160533780	160533781	chr2:160533781:C:G	rs1207203775	C	G	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	160612585	160612586	chr2:160612586:T:C	rs76248825	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	160660843	160660844	chr2:160660844:A:T	rs12465631	A	T	A	Sox1.mouse_HMG_4	9	1	+	4.870965791475116	-2.004803341649165	TCAACGTTCATTCA
chr2	160836658	160836659	chr2:160836659:T:C	rs270975	T	C	C	Sox1.mouse_HMG_4	13	1	-	5.080404009306936	-1.802341106671033	TGAACTGTCATTGA
chr2	161278581	161278582	chr2:161278582:A:G	rs62194250	A	G	G	Sox1.mouse_HMG_4	0	1	-	6.697908016421597	2.7963582692469977	TGAATTAAAATTGA
chr2	161278583	161278584	chr2:161278584:A:T	rs77815025	A	T	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	161327809	161327810	chr2:161327810:G:A	rs11885894	G	A	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	162032216	162032217	chr2:162032217:T:C	rs2284870	T	C	C	Sox1.mouse_HMG_4	7	1	-	7.076975978568366	6.1255489906065375	CGAATCTATATTCA
chr2	162118340	162118341	chr2:162118341:A:T	rs74899180	A	T	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	162118367	162118368	chr2:162118368:C:T	rs10171070	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.539189125840555	4.457608396413265	AGAATGGTTAGTCA
chr2	162118383	162118384	chr2:162118384:G:A	rs2241242	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	162244650	162244651	chr2:162244651:G:T	rs1033049378	G	T	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	162732278	162732279	chr2:162732279:T:G	rs569196424	T	G	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	162733156	162733157	chr2:162733157:T:G	rs147366619	T	G	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	163172234	163172235	chr2:163172235:T:C	rs1489635	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr2	163182125	163182126	chr2:163182126:T:C	rs16848118	T	C	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	163632635	163632636	chr2:163632636:T:A	rs1978907	T	A	A	Sox1.mouse_HMG_4	7	1	-	5.407451935000457	5.671696019547462	TGAACAAACTTTCA
chr2	163632636	163632637	chr2:163632637:T:G	rs1978908	T	G	T	Sox1.mouse_HMG_4	6	1	-	5.407451935000457	4.559272960484211	TGAACAAACTTTCA
chr2	163726381	163726382	chr2:163726382:G:A	rs140227104	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	164637403	164637404	chr2:164637404:C:T	rs10201664	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	164792916	164792917	chr2:164792917:C:G	rs139388144	C	G	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	164834879	164834880	chr2:164834880:A:G	rs355798	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	165954486	165954487	chr2:165954487:A:T	rs113473485	A	T	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr2	166057722	166057723	chr2:166057723:C:T	rs1841550	C	T	T	Sox1.mouse_HMG_4	1	1	-	5.066608704330541	-1.8421460749846785	TGAACGGCCATTCT
chr2	166229903	166229904	chr2:166229904:C:T	rs16851799	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.573953429166116	7.295970247993516	TGAGCACCCATTCA
chr2	166229904	166229905	chr2:166229905:A:G	rs56878447	A	G	G	Sox1.mouse_HMG_4	5	1	+	4.573953429166116	4.132174206560778	TGAGCACCCATTCA
chr2	166314603	166314604	chr2:166314604:A:C	rs6731773	A	C	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	166314977	166314978	chr2:166314978:T:C	rs6718922	T	C	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	166653351	166653352	chr2:166653352:G:A	rs76418269	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	166940791	166940792	chr2:166940792:G:A	rs59660078	G	A	A	Sox1.mouse_HMG_4	7	1	-	4.113476547027694	4.351389386212877	GGAATGACCAGGCA
chr2	167198109	167198110	chr2:167198110:A:G	rs989008	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	168157163	168157164	chr2:168157164:T:C	rs3769392	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	168157177	168157178	chr2:168157178:G:T	rs3769391	G	T	G	Sox1.mouse_HMG_4	6	1	-	7.14025848098447	7.988437455500715	TGAATACATCTTCA
chr2	168341099	168341100	chr2:168341100:G:T	rs73015283	G	T	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	168427578	168427579	chr2:168427579:G:A	rs1452286	G	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	168427583	168427584	chr2:168427584:C:T	rs1993158	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	168639248	168639249	chr2:168639249:G:A	rs80023874	G	A	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	168707368	168707369	chr2:168707369:T:C	rs3845721	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	168853246	168853247	chr2:168853247:G:A	rs527393	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	168941522	168941523	chr2:168941523:A:G	rs77601801	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr2	169184309	169184310	chr2:169184310:C:T	rs2284679	C	T	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	169236354	169236355	chr2:169236355:T:A	rs78008770	T	A	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	169342781	169342782	chr2:169342782:A:T	rs60641214	A	T	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	170002365	170002366	chr2:170002366:C:T	rs16857393	C	T	c	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	170155604	170155605	chr2:170155605:A:G	rs16857804	A	G	g	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	170311440	170311441	chr2:170311441:G:A	rs10209277	G	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	170478347	170478348	chr2:170478348:C:T	rs13005355	C	T	c	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr2	170696008	170696009	chr2:170696009:A:G	rs140753770	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	170704115	170704116	chr2:170704116:G:T	rs1815998	G	T	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr2	170712521	170712522	chr2:170712522:C:T	rs3749038	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	170712555	170712556	chr2:170712556:G:C	rs4668301	G	C	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	171225661	171225662	chr2:171225662:C:T	rs75508949	C	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	171248552	171248553	chr2:171248553:G:A	rs4667680	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	171433531	171433532	chr2:171433532:T:C	rs113044466	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	172065239	172065240	chr2:172065240:G:A	rs78893788	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	172104823	172104824	chr2:172104824:A:G	rs79061070	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	172336921	172336922	chr2:172336922:T:G	rs12614920	T	G	T	Sox1.mouse_HMG_4	9	1	-	7.174835909080991	0.29906677595671005	TGAATAAGCAGGCA
chr2	172640253	172640254	chr2:172640254:A:G	rs74700618	A	G	a	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	172777508	172777509	chr2:172777509:C:T	rs1863173	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	173048136	173048137	chr2:173048137:G:A	rs6717735	G	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	173048166	173048167	chr2:173048167:C:T	rs6717529	C	T	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	173060453	173060454	chr2:173060454:G:A	rs12614340	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	173426058	173426059	chr2:173426059:G:A	rs954187295	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	173658573	173658574	chr2:173658574:T:C	rs139933707	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	173676654	173676655	chr2:173676655:A:G	rs34203152	A	G	G	Sox1.mouse_HMG_4	7	1	-	10.70554796817443	10.467635128989249	TGAATTTTCATTCC
chr2	173851186	173851187	chr2:173851187:G:A	rs146926235	G	A	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	173908181	173908182	chr2:173908182:A:C	rs12464385	A	C	A	Sox1.mouse_HMG_4	11	1	-	7.13063065488397	3.6164765524776605	TGAATTTACATTAA
chr2	174385436	174385437	chr2:174385437:C:T	rs2167135	C	T	c	Sox1.mouse_HMG_4	12	1	+	6.179203666922144	-0.7295511123930762	TAAATTTGCATTCA
chr2	174536622	174536623	chr2:174536623:T:C	rs181053600	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr2	174536636	174536637	chr2:174536637:A:G	rs1864455	A	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	176024311	176024312	chr2:176024312:T:G	rs17289747	T	G	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	176127188	176127189	chr2:176127189:T:C	rs1024739118	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	176127195	176127196	chr2:176127196:G:C	rs6718516	G	C	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	176444212	176444213	chr2:176444213:G:A	rs6433589	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	176482406	176482407	chr2:176482407:T:C	rs6710701	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	177056650	177056651	chr2:177056651:G:A	rs148985702	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	177591569	177591570	chr2:177591570:A:G	rs11689550	A	G	G	Sox1.mouse_HMG_4	0	1	-	7.692159246850348	3.7906094996757487	TGAAGATATATTCA
chr2	177814913	177814914	chr2:177814914:T:G	rs1946813	T	G	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	177814919	177814920	chr2:177814920:G:A	rs6715232	G	A	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	177971605	177971606	chr2:177971606:C:T	rs2573085	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr2	178327623	178327624	chr2:178327624:G:A	chr2:178327624:G:A	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	178990804	178990805	chr2:178990805:G:C	rs141912382	G	C	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	179107237	179107238	chr2:179107238:A:G	rs1005597716	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.394874739430977	0.5121296234530073	TGGATTTTCATTCA
chr2	179107254	179107255	chr2:179107255:T:C	rs148007130	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	179262975	179262976	chr2:179262976:T:C	rs1158872	T	C	t	Sox1.mouse_HMG_4	10	1	+	6.731629825863659	-0.14413930726062163	TCAATTCTTATTCA
chr2	179483517	179483518	chr2:179483518:T:G	rs2271759	T	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	179558547	179558548	chr2:179558548:C:G	rs11683272	C	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	179614395	179614396	chr2:179614396:A:G	rs872162	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	179637628	179637629	chr2:179637629:G:A	rs3112943	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	179711578	179711579	chr2:179711579:A:G	rs80288112	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	179874722	179874723	chr2:179874723:C:A	rs1486236	C	A	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	180007382	180007383	chr2:180007383:G:T	rs143427760	G	T	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	180007414	180007415	chr2:180007415:C:G	rs551677350	C	G	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	180007422	180007423	chr2:180007423:C:A	rs577516190	C	A	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	180178055	180178056	chr2:180178056:T:A	chr2:180178056:T:A	T	A	T	Sox1.mouse_HMG_4	0	1	+	7.45666535799043	0.5924231913400411	TGAACTCCCAGTCA
chr2	180707933	180707934	chr2:180707934:C:G	rs150272726	C	G	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	181354864	181354865	chr2:181354865:T:C	rs139630957	T	C	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	181837784	181837785	chr2:181837785:A:G	rs74725505	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.117787507872109	0.24201837474782706	TGACTGAATATGCA
chr2	181955034	181955035	chr2:181955035:C:T	rs7582121	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	181955052	181955053	chr2:181955053:T:G	rs908391	T	G	G	Sox1.mouse_HMG_4	3	1	-	7.548634713486085	3.7581489577448437	GGAATAATAAGTCA
chr2	182117240	182117241	chr2:182117241:A:G	rs1882212	A	G	a	Sox1.mouse_HMG_4	9	1	+	6.8960138448125825	3.5311929573095746	TGAATCAGCATTCC
chr2	182623486	182623487	chr2:182623487:A:C	rs17265559	A	C	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	182826292	182826293	chr2:182826293:A:G	rs7607693	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	183157286	183157287	chr2:183157287:G:C	rs3791249	G	C	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	183730621	183730622	chr2:183730622:C:T	rs79539056	C	T	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	184141178	184141179	chr2:184141179:C:A	rs1997135	C	A	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	184326433	184326434	chr2:184326434:G:A	rs12998742	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr2	184456350	184456351	chr2:184456351:G:C	rs28535247	G	C	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	184635418	184635419	chr2:184635419:C:G	rs7591757	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	185576184	185576185	chr2:185576185:A:T	rs12105970	A	T	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	185691650	185691651	chr2:185691651:C:T	rs12613529	C	T	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	185740379	185740380	chr2:185740380:C:T	rs2370474	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	185980888	185980889	chr2:185980889:A:G	rs16827344	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	186193923	186193924	chr2:186193924:T:C	rs2370676	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	186275200	186275201	chr2:186275201:G:C	rs1043462415	G	C	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	186309298	186309299	chr2:186309299:C:T	rs12463831	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	186968993	186968994	chr2:186968994:A:G	rs4667133	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr2	187307949	187307950	chr2:187307950:G:T	rs840570	G	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	188242917	188242918	chr2:188242918:A:T	rs6728462	A	T	A	Sox1.mouse_HMG_4	2	1	+	6.488720610827678	-0.4200341684875435	TGATTTCATATTCA
chr2	189094182	189094183	chr2:189094183:C:T	rs72906333	C	T	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	189335938	189335939	chr2:189335939:G:A	rs2680629	G	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	189675308	189675309	chr2:189675309:G:A	rs79728600	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.610505253698501	-2.2982495256167175	GGAATAGACAGGCA
chr2	190416441	190416442	chr2:190416442:A:C	rs6744546	A	C	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	190513013	190513014	chr2:190513014:C:T	rs117519851	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	190583138	190583139	chr2:190583139:G:C	rs34101385	G	C	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	190643555	190643556	chr2:190643556:G:A	rs10204290	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	190800260	190800261	chr2:190800261:A:G	rs16832941	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	190846353	190846354	chr2:190846354:G:A	rs11897136	G	A	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	190922662	190922663	chr2:190922663:C:T	rs113499176	C	T	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	190961655	190961656	chr2:190961656:A:G	rs867637	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	191038629	191038630	chr2:191038630:A:G	rs16833208	A	G	G	Sox1.mouse_HMG_4	3	1	+	4.456099873992784	-2.431320035811412	AGAACACCTATTCA
chr2	191158981	191158982	chr2:191158982:A:G	rs6736458	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr2	191215418	191215419	chr2:191215419:T:C	rs1454760	T	C	t	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	191249434	191249435	chr2:191249435:G:C	rs946005738	G	C	G	Sox1.mouse_HMG_4	1	1	+	4.503866254812123	-2.404888524503096	GGAACACTCATTCC
chr2	191359547	191359548	chr2:191359548:G:C	rs6706103	G	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	191698899	191698900	chr2:191698900:A:G	rs191014452	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	192128883	192128884	chr2:192128884:C:T	rs16834234	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	192291429	192291430	chr2:192291430:T:G	rs1596879	T	G	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr2	192938474	192938475	chr2:192938475:A:G	rs1596749	A	G	A	Sox1.mouse_HMG_4	11	1	-	6.779488745848887	-0.10092616833868218	TGTATTGAAATTCA
chr2	194619503	194619504	chr2:194619504:G:T	rs11679788	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	195269088	195269089	chr2:195269089:C:T	rs112954187	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	195322431	195322432	chr2:195322432:G:A	rs1196093281	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	195358960	195358961	chr2:195358961:G:A	rs11686312	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	195477638	195477639	chr2:195477639:T:C	rs146463408	T	C	T	Sox1.mouse_HMG_4	0	1	-	7.527439872186692	10.794343666065473	AGAATTACCATTCA
chr2	195489114	195489115	chr2:195489115:A:C	rs78034544	A	C	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	195521351	195521352	chr2:195521352:T:C	rs17177798	T	C	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	195620703	195620704	chr2:195620704:A:G	rs149762701	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	195620742	195620743	chr2:195620743:C:A	rs73072021	C	A	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	196146098	196146099	chr2:196146099:C:T	rs2271888	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	196216815	196216816	chr2:196216816:G:T	rs1947496	G	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	196244773	196244774	chr2:196244774:A:G	rs4850686	A	G	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	196246286	196246287	chr2:196246287:C:T	rs1563380	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr2	196323668	196323669	chr2:196323669:C:A	rs10171016	C	A	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	196539989	196539990	chr2:196539990:G:A	rs4341955	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	196545176	196545177	chr2:196545177:C:T	rs11895142	C	T	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	196594246	196594247	chr2:196594247:G:A	rs115719576	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	196627249	196627250	chr2:196627250:T:C	rs10497791	T	C	N	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	196852841	196852842	chr2:196852842:T:C	rs73064908	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr2	197016166	197016167	chr2:197016167:G:A	rs75353535	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr2	197191958	197191959	chr2:197191959:T:C	rs2579411	T	C	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	197649152	197649153	chr2:197649153:C:T	rs7564924	C	T	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	197786728	197786729	chr2:197786729:A:C	chr2:197786729:A:C	A	C	A	Sox1.mouse_HMG_4	2	1	+	4.363421820924125	-2.545332958391093	GGACCTGCCATTCA
chr2	197944685	197944686	chr2:197944686:T:C	rs1518365	T	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	198056879	198056880	chr2:198056880:C:A	rs11679484	C	A	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	198197027	198197028	chr2:198197028:T:C	rs2342752	T	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr2	198873949	198873950	chr2:198873950:T:G	rs13390950	T	G	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	199020972	199020973	chr2:199020973:T:A	rs6711976	T	A	A	Sox1.mouse_HMG_4	5	1	+	6.757067686367737	7.396954779844615	GGAATTGTAATTCC
chr2	199148278	199148279	chr2:199148279:G:C	rs1451483	G	C	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	199160844	199160845	chr2:199160845:G:A	rs76469577	G	A	G	Sox1.mouse_HMG_4	8	1	-	6.634748285005615	6.493716986678476	TGAATTCCCATTAA
chr2	199160866	199160867	chr2:199160867:T:C	rs550383190	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	199225845	199225846	chr2:199225846:T:C	rs2084736	T	C	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	199364272	199364273	chr2:199364273:G:T	rs16831366	G	T	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr2	200039497	200039498	chr2:200039498:G:C	rs203763	G	C	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	200319624	200319625	chr2:200319625:T:C	rs34693942	T	C	C	Sox1.mouse_HMG_4	3	1	-	4.1922399428295	-2.695179966974698	AGAATACTCAGTCA
chr2	200725874	200725875	chr2:200725875:G:C	rs79735035	G	C	g	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	201116156	201116157	chr2:201116157:C:G	rs78384838	C	G	C	Sox1.mouse_HMG_4	7	1	-	6.166360519910281	7.144118753233931	TGACTGAGTATGCA
chr2	201116158	201116159	chr2:201116159:C:G	chr2:201116159:C:G	C	G	C	Sox1.mouse_HMG_4	5	1	-	6.166360519910281	3.0484242389096554	TGACTGAGTATGCA
chr2	201265584	201265585	chr2:201265585:A:C	rs2349070	A	C	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr2	201300357	201300358	chr2:201300358:C:T	rs2080302	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.033707651488149	0.12495287217292872	TGAATGGCAAGGCA
chr2	201793848	201793849	chr2:201793849:A:C	rs140819905	A	C	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	201937829	201937830	chr2:201937830:G:C	rs1076472	G	C	G	Sox1.mouse_HMG_4	1	1	+	4.879558735968551	-2.02919604334667	TGAATAATCTTGCA
chr2	202009377	202009378	chr2:202009378:G:C	rs16838617	G	C	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	202032564	202032565	chr2:202032565:G:A	rs67409803	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	202821976	202821977	chr2:202821977:G:A	rs115231724	G	A	G	Sox1.mouse_HMG_4	12	1	-	7.475486874093489	0.5667320947782686	TGAATAGCAGTGCA
chr2	203661511	203661512	chr2:203661512:G:C	rs10193976	G	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr2	203803079	203803080	chr2:203803080:A:G	rs80142073	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr2	203994790	203994791	chr2:203994791:A:G	rs6754914	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	204260049	204260050	chr2:204260050:C:T	rs60192131	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr2	205040734	205040735	chr2:205040735:T:C	rs10202420	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.7262478815492495	-0.15649723442871988	TGAATTAAAATACA
chr2	205175341	205175342	chr2:205175342:A:C	rs10181360	A	C	A	Sox1.mouse_HMG_4	5	1	-	8.245393763606826	8.443501634478363	TGAACTGCTAGTCA
chr2	205175363	205175364	chr2:205175364:A:T	rs10181441	A	T	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	205181576	205181577	chr2:205181577:A:C	rs67322794	A	C	A	Sox1.mouse_HMG_4	10	1	-	8.000914208763172	4.636093321260166	TGAATAGCCATGCC
chr2	205408351	205408352	chr2:205408352:G:T	rs10195354	G	T	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	205483082	205483083	chr2:205483083:T:A	rs537141267	T	A	T	Sox1.mouse_HMG_4	9	1	-	5.450295458589605	-1.4254736745346765	TGAATTTGAAGGCA
chr2	205483097	205483098	chr2:205483098:A:G	rs6739203	A	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	205618090	205618091	chr2:205618091:C:T	rs150658641	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	205707809	205707810	chr2:205707810:C:G	rs3771047	C	G	C	Sox1.mouse_HMG_4	13	1	+	7.722260490071408	4.437596924665204	TGAACACCTATTCC
chr2	205707903	205707904	chr2:205707904:A:G	rs849550	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.156733480822764	0.7919125933197577	TGACCACCCATGCA
chr2	205990067	205990068	chr2:205990068:G:C	rs17236612	G	C	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	206011534	206011535	chr2:206011535:A:G	rs817992	A	G	A	Sox1.mouse_HMG_4	0	1	-	7.716605570063707	3.815055822889108	TGAATAGTATTTCA
chr2	206716376	206716377	chr2:206716377:C:G	rs4675627	C	G	G	Sox1.mouse_HMG_4	1	1	-	7.770517748360849	0.8617629690456277	TGGATATACATTCA
chr2	206874406	206874407	chr2:206874407:C:T	rs13427436	C	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	206993423	206993424	chr2:206993424:A:G	rs1453170	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr2	207016298	207016299	chr2:207016299:C:T	rs72954216	C	T	C	Sox1.mouse_HMG_4	1	1	-	9.523152412884668	2.6143976335694497	CGAATACCAATTCA
chr2	207071276	207071277	chr2:207071277:G:A	rs146528448	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	207240198	207240199	chr2:207240199:A:G	rs972426021	A	G	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	207471367	207471368	chr2:207471368:T:C	rs6748416	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr2	207584270	207584271	chr2:207584271:A:G	rs2709389	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	207693946	207693947	chr2:207693947:C:G	rs3845813	C	G	C	Sox1.mouse_HMG_4	3	1	+	4.413909326684789	1.3169751726218306	TGACTAGCCATTTA
chr2	207824452	207824453	chr2:207824453:T:C	rs11675864	T	C	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr2	207848502	207848503	chr2:207848503:A:G	rs545055778	A	G	A	Sox1.mouse_HMG_4	11	1	-	5.58456271459697	-1.2958521995905992	TGAACAATCAGTCC
chr2	208101884	208101885	chr2:208101885:T:C	rs2363456	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	208190439	208190440	chr2:208190440:T:C	rs67989853	T	C	C	Sox1.mouse_HMG_4	3	1	-	7.53817674358733	0.650756833783132	TGTATTGACATTCA
chr2	208268618	208268619	chr2:208268619:A:C	rs12694104	A	C	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	208553414	208553415	chr2:208553415:A:G	rs11888566	A	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	208585220	208585221	chr2:208585221:G:A	rs1074572	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	208640151	208640152	chr2:208640152:C:G	rs115797860	C	G	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	208820526	208820527	chr2:208820527:C:T	rs142716587	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	208889084	208889085	chr2:208889085:A:G	rs73985461	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr2	209383988	209383989	chr2:209383989:T:C	rs12614926	T	C	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	209393148	209393149	chr2:209393149:C:T	rs1993236	C	T	T	Sox1.mouse_HMG_4	7	1	-	6.81909076039902	7.770517748360849	TTAATATGCATTCA
chr2	209663801	209663802	chr2:209663802:A:G	rs567613627	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.864800310819032	0.9773804010148335	TGAATGATCAGTCC
chr2	210393385	210393386	chr2:210393386:C:T	rs3851937	C	T	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	210399110	210399111	chr2:210399111:C:T	rs11896108	C	T	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	210445475	210445476	chr2:210445476:C:T	rs3770696	C	T	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	210445505	210445506	chr2:210445506:A:G	rs143933409	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr2	211509999	211510000	chr2:211510000:T:C	rs1851189	T	C	T	Sox1.mouse_HMG_4	6	1	+	9.68335906368914	9.161145448448965	GGAATTTAAATTCA
chr2	211895924	211895925	chr2:211895925:C:T	rs75981138	C	T	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	212421956	212421957	chr2:212421957:A:T	rs112309522	A	T	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr2	212421980	212421981	chr2:212421981:A:G	rs76172066	A	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	212516914	212516915	chr2:212516915:T:C	rs7606241	T	C	C	Sox1.mouse_HMG_4	10	1	+	10.6086391496991	3.73287001657482	TGAATGTCTATGCA
chr2	212798214	212798215	chr2:212798215:G:T	rs6708555	G	T	G	Sox1.mouse_HMG_4	5	1	+	6.444089117523473	6.245981246651934	TGACCGCAAATTCA
chr2	212871159	212871160	chr2:212871160:C:T	rs7588684	C	T	C	Sox1.mouse_HMG_4	1	1	-	3.812471029409739	-3.0962837499054814	CGAATGACCACTCA
chr2	213199876	213199877	chr2:213199877:T:C	rs78992409	T	C	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	213233051	213233052	chr2:213233052:G:A	rs74977650	G	A	G	Sox1.mouse_HMG_4	7	1	-	5.374332611462429	5.612245450647612	TGAACAGCTTTTCA
chr2	213506691	213506692	chr2:213506692:T:G	rs6753825	T	G	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	213863918	213863919	chr2:213863919:G:T	rs55886363	G	T	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	213886579	213886580	chr2:213886580:A:G	rs13392718	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.870784514698721	-2.037970264616498	TGAATTGAGATGCA
chr2	214031977	214031978	chr2:214031978:A:T	rs7584924	A	T	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	214533629	214533630	chr2:214533630:T:C	rs10202098	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	215357036	215357037	chr2:215357037:A:G	rs6725921	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	215433233	215433234	chr2:215433234:C:A	rs115701521	C	A	C	Sox1.mouse_HMG_4	7	1	+	7.743444512763275	7.717113267401454	GGAATATCCAGTCA
chr2	215745129	215745130	chr2:215745130:T:C	rs940018	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	215764295	215764296	chr2:215764296:A:G	rs6435918	A	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr2	215913520	215913521	chr2:215913521:C:A	rs4365463	C	A	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	216319991	216319992	chr2:216319992:T:C	rs16855901	T	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr2	216319998	216319999	chr2:216319999:G:T	rs115430901	G	T	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr2	217016780	217016781	chr2:217016781:A:G	rs16856821	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	217055087	217055088	chr2:217055088:A:G	rs17778329	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	217244065	217244066	chr2:217244066:G:A	rs1609871	G	A	A	Sox1.mouse_HMG_4	5	1	-	5.811360487798069	8.731188897927156	TGAATCTGAATTCC
chr2	217248656	217248657	chr2:217248657:T:G	rs56000151	T	G	G	Sox1.mouse_HMG_4	5	1	-	3.793466922267121	0.23375141866115823	TGAATACCCCTGCA
chr2	217353971	217353972	chr2:217353972:G:A	rs6736242	G	A	A	Sox1.mouse_HMG_4	4	1	-	4.756675912051126	7.478692730878525	TGAACAGCATTTCA
chr2	217666141	217666142	chr2:217666142:C:T	rs1367194	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	217719461	217719462	chr2:217719462:T:C	rs7576807	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr2	217849606	217849607	chr2:217849607:A:T	rs10170040	A	T	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	218216915	218216916	chr2:218216916:C:T	rs898499170	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.750070892189716	8.472087711017114	TGAACAGTCAGGCA
chr2	219062559	219062560	chr2:219062560:A:G	rs12467665	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	219218052	219218053	chr2:219218053:G:C	rs73993546	G	C	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	219349663	219349664	chr2:219349664:G:A	rs4674379	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	219774126	219774127	chr2:219774127:A:G	rs12053044	A	G	a	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	219783192	219783193	chr2:219783193:G:A	rs11681361	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr2	219959369	219959370	chr2:219959370:G:A	rs115119156	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr2	219973320	219973321	chr2:219973321:C:T	rs946720066	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr2	219973351	219973352	chr2:219973352:A:G	rs7606516	A	G	A	Sox1.mouse_HMG_4	13	1	+	6.200538536433167	-0.6822065795448022	TGATTTTGCATTCA
chr2	220285011	220285012	chr2:220285012:A:T	rs74566647	A	T	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	220302141	220302142	chr2:220302142:G:A	rs12468264	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr2	220956260	220956261	chr2:220956261:A:G	rs71431208	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.575219345029829	-2.300549788094453	TGAATAGCTATGCT
chr2	221059459	221059460	chr2:221059460:A:G	rs116344182	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	221162945	221162946	chr2:221162946:T:C	rs2019083	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	221502517	221502518	chr2:221502518:C:T	rs56263717	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr2	222006190	222006191	chr2:222006191:A:G	rs10178464	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.638876754075524	0.763107620951242	TGACTATTCATGCA
chr2	222136607	222136608	chr2:222136608:A:G	rs1898664	A	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	222141478	222141479	chr2:222141479:G:A	rs35204747	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr2	222703522	222703523	chr2:222703523:A:G	rs4480975	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr2	222849687	222849688	chr2:222849688:A:G	rs2166463	A	G	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	222852084	222852085	chr2:222852085:A:G	rs113099924	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	223170016	223170017	chr2:223170017:G:A	rs10209741	G	A	g	Sox1.mouse_HMG_4	4	1	-	5.014267795631469	7.736284614458868	TGAACGGACATTAA
chr2	223486993	223486994	chr2:223486994:T:C	rs145234242	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr2	223699881	223699882	chr2:223699882:C:T	rs114734917	C	T	C	Sox1.mouse_HMG_4	1	1	-	9.393662933717565	2.484908154402346	TGAATTCAAAGTCA
chr2	223731901	223731902	chr2:223731902:A:G	rs10498153	A	G	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr2	223731913	223731914	chr2:223731914:T:C	rs582830	T	C	T	Sox1.mouse_HMG_4	7	1	+	4.844969548839603	4.607056709654421	GTAATAGTCATTCA
chr2	223970651	223970652	chr2:223970652:C:T	rs1025734	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr2	224158706	224158707	chr2:224158707:A:G	rs75295808	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	224911711	224911712	chr2:224911712:T:C	rs62186347	T	C	C	Sox1.mouse_HMG_4	7	1	-	5.1792873317228265	4.227860343760998	TGAACAAATGTTCC
chr2	224927769	224927770	chr2:224927770:C:T	rs79699029	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr2	224983177	224983178	chr2:224983178:A:G	rs73993941	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr2	225566934	225566935	chr2:225566935:G:A	rs116683221	G	A	g	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	225566951	225566952	chr2:225566952:C:T	rs77281950	C	T	c	Sox1.mouse_HMG_4	5	1	-	6.79182214859604	7.233601371201379	TGACTGTATATGCA
chr2	225867224	225867225	chr2:225867225:C:T	rs10451592	C	T	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	225867238	225867239	chr2:225867239:G:A	rs112175261	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	226277321	226277322	chr2:226277322:C:T	rs2713542	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.87591574637784	4.7348844480507	TGAAAAGACAGTCA
chr2	226295890	226295891	chr2:226295891:A:T	rs77263086	A	T	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	226431355	226431356	chr2:226431356:G:A	rs12694698	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	226579715	226579716	chr2:226579716:T:A	rs113029327	T	A	T	Sox1.mouse_HMG_4	5	1	-	4.940455277397248	4.3005681839203715	TGAACATATTTTCA
chr2	226671564	226671565	chr2:226671565:T:C	rs527911451	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr2	226965697	226965698	chr2:226965698:G:T	rs13385711	G	T	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	227402002	227402003	chr2:227402003:C:T	rs75077103	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	227510365	227510366	chr2:227510366:G:T	rs79584374	G	T	G	Sox1.mouse_HMG_4	4	1	-	7.903096292051268	3.779031128380087	TGAACCTTAATTCA
chr2	227516391	227516392	chr2:227516392:T:C	rs10191552	T	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr2	227824829	227824830	chr2:227824830:A:C	rs75942749	A	C	A	Sox1.mouse_HMG_4	11	1	-	9.672698644328813	6.1585445419225024	CGAATGCATATTCA
chr2	227890870	227890871	chr2:227890871:A:G	rs76495643	A	G	G	Sox1.mouse_HMG_4	9	1	+	6.81909076039902	3.454269872896014	TGTATATGCATTCA
chr2	227948161	227948162	chr2:227948162:T:G	rs1524029	T	G	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	228119275	228119276	chr2:228119276:T:C	rs67606545	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	228158157	228158158	chr2:228158158:A:G	rs75339037	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr2	228158192	228158193	chr2:228158193:G:A	rs76762410	G	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr2	228465604	228465605	chr2:228465605:C:T	rs7592831	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	228549868	228549869	chr2:228549869:G:T	rs7604995	G	T	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr2	229088204	229088205	chr2:229088205:C:T	rs34896480	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.044047585037371	7.76606440386477	TGAACGGACAGGCA
chr2	229109452	229109453	chr2:229109453:A:G	rs58534083	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	229482059	229482060	chr2:229482060:T:C	rs6717075	T	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	229539312	229539313	chr2:229539313:C:T	rs61470547	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr2	230016380	230016381	chr2:230016381:G:A	rs56323616	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	230127363	230127364	chr2:230127364:T:C	rs10183352	T	C	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	230200366	230200367	chr2:230200367:C:A	rs41423848	C	A	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr2	230569546	230569547	chr2:230569547:C:T	rs77262854	C	T	.	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	230569556	230569557	chr2:230569557:G:A	rs16827412	G	A	.	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr2	230600540	230600541	chr2:230600541:C:T	rs6745641	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	230618761	230618762	chr2:230618762:A:G	rs12998075	A	G	N	Sox1.mouse_HMG_4	5	1	-	4.639010296458896	1.7191818863298103	TGAACTGCCATGCC
chr2	230618784	230618785	chr2:230618785:C:G	rs11886067	C	G	c	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr2	230671314	230671315	chr2:230671315:C:G	rs75982910	C	G	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	230751432	230751433	chr2:230751433:G:A	rs62193627	G	A	g	Sox1.mouse_HMG_4	4	1	-	5.357257626745284	8.079274445572683	AGAACATTCATTCA
chr2	230896803	230896804	chr2:230896804:T:C	rs1465835	T	C	C	Sox1.mouse_HMG_4	13	1	-	3.6145142487170645	-3.268230867260905	CGACTGGCCAGTCA
chr2	230896818	230896819	chr2:230896819:C:T	rs1004215	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr2	230906486	230906487	chr2:230906487:A:G	rs73992965	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.842169588097182	-2.0665851912180377	TGAACTGACATTCT
chr2	230941947	230941948	chr2:230941948:T:C	rs141980940	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	231017701	231017702	chr2:231017702:C:T	rs4973373	C	T	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	231053385	231053386	chr2:231053386:C:T	rs75644187	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	231057438	231057439	chr2:231057439:A:G	rs1027421896	A	G	A	Sox1.mouse_HMG_4	8	1	+	4.991382894451273	-0.3119220136078027	TGAACAGTAAGGCA
chr2	231491054	231491055	chr2:231491055:T:C	rs71417749	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.569608060830905	0.6680583136563059	TGACCTGACGTTCA
chr2	231886397	231886398	chr2:231886398:T:C	rs2119062	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.0857053773876215	-2.79006375573666	GGAATGAACATACA
chr2	232213748	232213749	chr2:232213749:G:T	rs7602768	G	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr2	232222843	232222844	chr2:232222844:T:C	rs114304385	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	232337187	232337188	chr2:232337188:T:C	rs143549263	T	C	T	Sox1.mouse_HMG_4	10	1	+	6.161400032008373	-0.7143691011159075	GGAATTAGTATGCA
chr2	232367353	232367354	chr2:232367354:C:T	rs1850593	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr2	232374561	232374562	chr2:232374562:C:T	rs115238481	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	232731721	232731722	chr2:232731722:A:G	rs1044018762	A	G	A	Sox1.mouse_HMG_4	5	1	+	4.7144949626866115	4.2727157400812725	TGACAAGTCATTCA
chr2	232731742	232731743	chr2:232731743:C:T	rs111349153	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	232979677	232979678	chr2:232979678:G:A	rs183314942	G	A	G	Sox1.mouse_HMG_4	12	1	-	6.077616702182793	-0.8311380771324279	TGAATGCAAGTGCA
chr2	233035888	233035889	chr2:233035889:G:A	rs13391656	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	233407836	233407837	chr2:233407837:T:C	rs1049806769	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr2	233795671	233795672	chr2:233795672:A:G	rs2361503	A	G	A	Sox1.mouse_HMG_4	2	1	+	5.026999528347541	-1.8817552509676807	GGAACTGTCAGTCA
chr2	233799982	233799983	chr2:233799983:G:A	rs13018934	G	A	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr2	233844867	233844868	chr2:233844868:A:C	rs10929309	A	C	a	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr2	233893138	233893139	chr2:233893139:C:T	rs10164928	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	233988197	233988198	chr2:233988198:A:T	rs7601861	A	T	T	Sox1.mouse_HMG_4	3	1	+	4.4979789981317575	-2.3894409116724407	TGAACTGCTATGCC
chr2	233989824	233989825	chr2:233989825:C:T	rs11563057	C	T	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	234255428	234255429	chr2:234255429:C:T	rs111483794	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	234286681	234286682	chr2:234286682:G:A	rs11894176	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	234571817	234571818	chr2:234571818:G:A	rs28667403	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr2	234571830	234571831	chr2:234571831:A:G	rs78901320	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr2	234600839	234600840	chr2:234600840:G:A	rs6748717	G	A	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr2	234839553	234839554	chr2:234839554:A:G	rs78381703	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr2	235386560	235386561	chr2:235386561:T:C	rs61531008	T	C	t	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	235501114	235501115	chr2:235501115:C:T	rs368940822	C	T	C	Sox1.mouse_HMG_4	0	1	+	8.05570596167407	11.95725570884867	CGAACATACATTCA
chr2	235505107	235505108	chr2:235505108:T:C	rs74861870	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	235937949	235937950	chr2:235937950:G:T	rs2317004	G	T	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	235937951	235937952	chr2:235937952:G:A	rs2317005	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	235957133	235957134	chr2:235957134:G:A	rs6746318	G	A	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr2	236049177	236049178	chr2:236049178:G:A	rs2034648	G	A	A	Sox1.mouse_HMG_4	3	1	-	3.6145142487170645	0.5175800946541067	CGACTGGCCAGTCA
chr2	236200521	236200522	chr2:236200522:G:T	rs66648438	G	T	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	236608907	236608908	chr2:236608908:G:A	rs11691679	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	236608926	236608927	chr2:236608927:G:C	rs73131743	G	C	G	Sox1.mouse_HMG_4	7	1	-	7.219634697062434	6.241876463738785	TGAAATTCCATTCA
chr2	236744854	236744855	chr2:236744855:C:T	rs73997927	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr2	236977762	236977763	chr2:236977763:C:G	rs1865666	C	G	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr2	237097918	237097919	chr2:237097919:T:C	rs189528824	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr2	237181089	237181090	chr2:237181090:G:A	rs13429388	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	237422850	237422851	chr2:237422851:T:C	rs6753082	T	C	C	Sox1.mouse_HMG_4	7	1	+	5.753276748974752	5.515363909789569	TGAACAGTCAATCA
chr2	237482614	237482615	chr2:237482615:A:G	rs10198279	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr2	237532328	237532329	chr2:237532329:C:T	rs77789507	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr2	237618708	237618709	chr2:237618709:C:T	rs116367718	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr2	237749640	237749641	chr2:237749641:T:C	rs139052593	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr2	237754822	237754823	chr2:237754823:A:T	rs3754708	A	T	T	Sox1.mouse_HMG_4	8	1	-	6.462755916325495	5.845099216914191	GGAATGCATATGCA
chr2	237754827	237754828	chr2:237754828:T:G	rs3754707	T	G	G	Sox1.mouse_HMG_4	3	1	-	6.462755916325495	2.6722701605842545	GGAATGCATATGCA
chr2	237758404	237758405	chr2:237758405:G:T	rs7575941	G	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr2	237943292	237943293	chr2:237943293:C:T	rs6713087	C	T	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr2	238514937	238514938	chr2:238514938:G:A	rs12328512	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr2	238583189	238583190	chr2:238583190:A:T	rs2121905	A	T	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr2	239005677	239005678	chr2:239005678:T:C	rs62191126	T	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr2	239238784	239238785	chr2:239238785:T:G	rs62188567	T	G	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	239517154	239517155	chr2:239517155:G:A	rs62180943	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	239574959	239574960	chr2:239574960:T:C	rs6543551	T	C	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr2	239574960	239574961	chr2:239574961:G:T	rs7601877	G	T	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	239591437	239591438	chr2:239591438:G:A	rs72994450	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr2	239694770	239694771	chr2:239694771:G:A	rs56096250	G	A	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr2	239694804	239694805	chr2:239694805:A:G	rs4851983	A	G	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr2	239718809	239718810	chr2:239718810:C:T	rs113061742	C	T	c	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr2	239719212	239719213	chr2:239719213:T:A	rs1971807	T	A	-	Sox1.mouse_HMG_4	6	1	+	4.9358094963339605	5.261774855610029	TGAACATATATCCA
chr2	239719309	239719310	chr2:239719310:A:C	rs201959430	A	C	-	Sox1.mouse_HMG_4	7	1	+	5.076840794661101	5.103172040022922	TGAACATACATCCA
chr2	239719359	239719360	chr2:239719360:G:A	rs62181415	G	A	-	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr2	239719435	239719436	chr2:239719436:A:T	rs112680228	A	T	-	Sox1.mouse_HMG_4	5	1	+	5.103172040022922	4.463284946546046	TGAACATCCATCCA
chr2	239719919	239719920	chr2:239719920:T:G	rs143607538	T	G	-	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr2	239720017	239720018	chr2:239720018:C:T	rs73006258	C	T	-	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr2	239760786	239760787	chr2:239760787:T:G	rs7585903	T	G	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr2	239765523	239765524	chr2:239765524:G:T	rs74004026	G	T	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	239788913	239788914	chr2:239788914:T:G	rs34391473	T	G	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr2	239911397	239911398	chr2:239911398:A:T	rs62181313	A	T	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr2	239911421	239911422	chr2:239911422:A:G	rs28412675	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.173830664130826	3.4518138453034277	TGAATGTGCATGCC
chr2	240450609	240450610	chr2:240450610:C:G	rs3749127	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr2	240481397	240481398	chr2:240481398:G:A	rs186111670	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr2	240685881	240685882	chr2:240685882:T:C	rs116334196	T	C	-	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr2	240835386	240835387	chr2:240835387:C:T	rs34679468	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr2	240835400	240835401	chr2:240835401:T:C	rs4676388	T	C	C	Sox1.mouse_HMG_4	9	1	-	4.227950283865721	0.8631293963627142	GGAAGGGCCATTCA
chr2	240894955	240894956	chr2:240894956:C:T	rs6721874	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr2	240935942	240935943	chr2:240935943:C:A	rs56237031	C	A	C	Sox1.mouse_HMG_4	6	1	+	6.023244186914714	6.871423161430959	CGACTGCACATTCA
chr2	241135398	241135399	chr2:241135399:A:G	rs138499733	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr2	241681380	241681381	chr2:241681381:A:G	rs35635596	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr2	241681402	241681403	chr2:241681403:T:G	rs77487769	T	G	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr2	241726039	241726040	chr2:241726040:G:A	rs35435997	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr2	241886226	241886227	chr2:241886227:G:A	rs79651175	G	A	.	Sox1.mouse_HMG_4	10	1	+	6.568398101444584	3.057449855823309	TGAACTAGAAGTCA
chr2	242060592	242060593	chr2:242060593:C:T	rs114781993	C	T	.	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr2	242084343	242084344	chr2:242084344:C:T	rs749924	C	T	.	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr20	276350	276351	chr20:276351:A:G	rs3827151	A	G	A	Sox1.mouse_HMG_4	13	1	+	3.5064162684816687	-3.3763288474963007	GGAATGCTCAATCA
chr20	597211	597212	chr20:597212:G:A	rs13042966	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr20	995233	995234	chr20:995234:C:G	rs6056487	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr20	1004847	1004848	chr20:1004848:G:T	rs79178617	G	T	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr20	1387744	1387745	chr20:1387745:T:A	rs13039228	T	A	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr20	1667646	1667647	chr20:1667647:A:G	rs73082701	A	G	-	Sox1.mouse_HMG_4	0	1	-	8.360727192183923	4.459177445009321	TGAATAATCATTGA
chr20	1897017	1897018	chr20:1897018:C:T	rs4814710	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr20	1961298	1961299	chr20:1961299:A:G	rs6112153	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr20	2206777	2206778	chr20:2206778:A:G	rs73606127	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr20	2206783	2206784	chr20:2206784:G:A	rs6075795	G	A	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr20	2592839	2592840	chr20:2592840:C:G	rs11696526	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr20	2914383	2914384	chr20:2914384:C:T	rs894097220	C	T	C	Sox1.mouse_HMG_4	11	1	-	4.256363645954538	0.8901028341732793	TGTATATACATGCA
chr20	3568717	3568718	chr20:3568718:T:C	rs235564	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.673999062698539	0.7912539467205697	AGAATATATATTCA
chr20	3696366	3696367	chr20:3696367:C:T	rs525339	C	T	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr20	3826960	3826961	chr20:3826961:T:C	rs6037671	T	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr20	4057918	4057919	chr20:4057919:G:A	rs550461279	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.533546918596169	0.6247921392809499	GGAATGGACATGCA
chr20	4186586	4186587	chr20:4186587:C:T	rs6139351	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr20	4299868	4299869	chr20:4299869:A:G	rs6052494	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr20	4304613	4304614	chr20:4304614:G:C	rs3892508	G	C	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr20	4435653	4435654	chr20:4435654:C:T	rs297740	C	T	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr20	4512894	4512895	chr20:4512895:C:G	rs297773	C	G	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr20	4743572	4743573	chr20:4743573:A:G	rs2093388	A	G	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr20	4743576	4743577	chr20:4743577:C:A	rs2093387	C	A	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr20	4840616	4840617	chr20:4840617:G:A	rs6116541	G	A	G	Sox1.mouse_HMG_4	12	1	-	7.692159246850348	0.7834044675351277	TGAAAATATATTCA
chr20	4896162	4896163	chr20:4896163:C:T	rs61639360	C	T	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr20	5452301	5452302	chr20:5452302:T:C	rs7263844	T	C	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr20	5605135	5605136	chr20:5605136:A:G	rs73587616	A	G	a	Sox1.mouse_HMG_4	8	1	-	4.9334792945435595	5.074510592870702	TGAACATATATTCT
chr20	5660626	5660627	chr20:5660627:G:A	rs13044797	G	A	G	Sox1.mouse_HMG_4	9	1	+	4.318059245996467	7.682880133499473	GGAATGGACGGTCA
chr20	5797759	5797760	chr20:5797760:C:A	rs6085278	C	A	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr20	5862793	5862794	chr20:5862794:C:G	rs1343178	C	G	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr20	5904719	5904720	chr20:5904720:C:T	rs1287060	C	T	T	Sox1.mouse_HMG_4	4	1	+	4.36358873194784	7.085605550775239	TGAACAGGTATTAA
chr20	6005670	6005671	chr20:6005671:A:G	rs370990678	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr20	6051610	6051611	chr20:6051611:T:C	rs6053853	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr20	6051649	6051650	chr20:6051650:C:T	rs6053854	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr20	6129858	6129859	chr20:6129859:T:A	rs6139924	T	A	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr20	6388802	6388803	chr20:6388803:C:G	chr20:6388803:C:G	C	G	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr20	6395809	6395810	chr20:6395810:G:C	rs189583	G	C	G	Sox1.mouse_HMG_4	9	1	+	4.04292628281207	0.5319780371907954	TGAACATGCGTTCC
chr20	6395833	6395834	chr20:6395834:G:A	rs966816	G	A	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr20	6691175	6691176	chr20:6691176:A:G	rs6054463	A	G	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr20	6824635	6824636	chr20:6824636:A:G	rs76046847	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr20	7097052	7097053	chr20:7097053:G:A	rs6133396	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr20	7380181	7380182	chr20:7380182:C:T	rs73080665	C	T	c	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr20	7695479	7695480	chr20:7695480:C:T	rs558233215	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr20	7841558	7841559	chr20:7841559:C:A	rs115688824	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr20	7959587	7959588	chr20:7959588:C:T	rs6038985	C	T	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr20	8078162	8078163	chr20:8078163:C:G	rs6055517	C	G	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr20	8469910	8469911	chr20:8469911:C:A	rs6055838	C	A	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr20	8494961	8494962	chr20:8494962:T:C	rs6055864	T	C	C	Sox1.mouse_HMG_4	5	1	-	4.951982243871139	4.510203021265801	AGAACATATATTCA
chr20	8751531	8751532	chr20:8751532:G:A	rs11700104	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr20	8859506	8859507	chr20:8859507:C:A	rs6133635	C	A	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr20	9397646	9397647	chr20:9397647:T:C	rs6133706	T	C	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr20	9574629	9574630	chr20:9574630:C:T	rs73061756	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr20	9601228	9601229	chr20:9601229:T:C	rs6056740	T	C	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr20	10003067	10003068	chr20:10003068:A:C	rs75015343	A	C	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr20	10446723	10446724	chr20:10446724:T:C	rs13038835	T	C	C	Sox1.mouse_HMG_4	13	1	-	8.099705335553706	1.2169602195757374	TGAAAAGATATTCA
chr20	10516521	10516522	chr20:10516522:G:A	rs626619	G	A	G	Sox1.mouse_HMG_4	8	1	-	3.517200057155402	3.3761687588282614	AGAATGCTCATTCC
chr20	10516541	10516542	chr20:10516542:C:T	rs860714	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr20	10580181	10580182	chr20:10580182:T:A	rs528864020	T	A	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr20	10883677	10883678	chr20:10883678:C:T	rs6040218	C	T	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr20	11111285	11111286	chr20:11111286:C:T	rs62191649	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr20	11179083	11179084	chr20:11179084:T:A	rs16992245	T	A	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr20	11581292	11581293	chr20:11581293:G:T	rs149090304	G	T	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr20	11873729	11873730	chr20:11873730:A:G	rs2144352	A	G	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr20	11907317	11907318	chr20:11907318:T:G	rs3762217	T	G	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr20	11952970	11952971	chr20:11952971:G:A	rs56259290	G	A	g	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr20	12030640	12030641	chr20:12030641:T:G	rs13037930	T	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr20	12511537	12511538	chr20:12511538:A:G	rs2024776	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr20	12554646	12554647	chr20:12554647:C:T	rs533793310	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr20	12923494	12923495	chr20:12923495:C:T	rs165553	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr20	13013231	13013232	chr20:13013232:C:T	rs615921	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr20	13101463	13101464	chr20:13101464:A:T	rs114639072	A	T	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr20	13639478	13639479	chr20:13639479:G:C	rs34892632	G	C	G	Sox1.mouse_HMG_4	1	1	+	6.5998303174229696	-0.3089244618922502	TGAATGTAAAGGCA
chr20	13858776	13858777	chr20:13858777:C:T	rs570682170	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr20	14055293	14055294	chr20:14055294:G:C	chr20:14055294:G:C	G	C	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr20	14566304	14566305	chr20:14566305:T:A	rs79797779	T	A	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr20	14618535	14618536	chr20:14618536:C:T	rs6135209	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr20	14618542	14618543	chr20:14618543:C:A	rs6042824	C	A	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr20	14646198	14646199	chr20:14646199:C:A	rs1932935	C	A	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr20	14701311	14701312	chr20:14701312:C:T	rs1932950	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr20	14759971	14759972	chr20:14759972:G:A	rs116963724	G	A	G	Sox1.mouse_HMG_4	7	1	-	9.827363787287661	10.065276626472842	GGAATACCAATTCA
chr20	14921875	14921876	chr20:14921876:T:C	rs6135309	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.361724171946449	4.63970735311905	TGAATGTACAATCA
chr20	14953947	14953948	chr20:14953948:T:C	rs1028741	T	C	T	Sox1.mouse_HMG_4	5	1	-	4.823517045031217	4.381737822425878	TGAACACTCACTCA
chr20	14986143	14986144	chr20:14986144:C:T	rs55811960	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr20	15011895	15011896	chr20:15011896:G:T	rs4140562	G	T	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr20	15113027	15113028	chr20:15113028:A:G	rs73096076	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr20	15200286	15200287	chr20:15200287:T:C	rs799182	T	C	T	Sox1.mouse_HMG_4	9	1	-	11.17342034184592	7.808599454342915	TGAATATATAGTCA
chr20	16174533	16174534	chr20:16174534:A:G	rs908499212	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr20	16206626	16206627	chr20:16206627:T:C	rs6131793	T	C	C	Sox1.mouse_HMG_4	10	1	+	4.0402749375207465	-2.835494195603535	TGACTTGTCATCCA
chr20	16243495	16243496	chr20:16243496:A:C	rs10485548	A	C	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr20	16385475	16385476	chr20:16385476:T:C	rs76378429	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.51562579871948	3.7936089798920793	TGAATACAAATTCT
chr20	16533586	16533587	chr20:16533587:A:G	rs2179904	A	G	G	Sox1.mouse_HMG_4	11	1	-	4.199510620951061	-2.680904293236508	GGTATATCCATTCA
chr20	16552105	16552106	chr20:16552106:T:C	rs16997876	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.727687805827501	-0.1550573101504682	TGAATTAAAAGGCA
chr20	16560848	16560849	chr20:16560849:G:A	rs6034531	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr20	16607662	16607663	chr20:16607663:C:T	rs945240	C	T	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr20	16886357	16886358	chr20:16886358:T:C	rs1884858	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr20	17164206	17164207	chr20:17164207:A:G	rs6131911	A	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr20	17487085	17487086	chr20:17487086:C:T	rs567308227	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr20	17712046	17712047	chr20:17712047:G:C	rs115774380	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr20	17883474	17883475	chr20:17883475:G:A	rs77358639	G	A	A	Sox1.mouse_HMG_4	1	1	+	7.988437455500716	1.0796826761854954	TGAATAAATAATCA
chr20	17892577	17892578	chr20:17892578:A:G	rs6105833	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr20	18310419	18310420	chr20:18310420:C:T	rs2424155	C	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr20	18751115	18751116	chr20:18751116:G:A	rs6081353	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr20	18788247	18788248	chr20:18788248:G:T	rs112568396	G	T	g	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr20	19110886	19110887	chr20:19110887:G:A	rs7271149	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr20	19447247	19447248	chr20:19447248:G:A	rs1535020	G	A	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr20	19468290	19468291	chr20:19468291:A:T	rs6075513	A	T	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr20	19504562	19504563	chr20:19504563:T:C	rs7274531	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr20	19510491	19510492	chr20:19510492:G:A	rs73277170	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr20	19566625	19566626	chr20:19566626:G:A	rs2328412	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr20	19566653	19566654	chr20:19566654:C:A	rs2328413	C	A	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr20	19595633	19595634	chr20:19595634:C:G	rs6046205	C	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr20	19634106	19634107	chr20:19634107:A:C	rs6081690	A	C	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr20	19978677	19978678	chr20:19978678:T:A	rs6035497	T	A	T	Sox1.mouse_HMG_4	3	1	-	10.8647974225597	3.9773775127555044	TGAACATGTATTCA
chr20	19995459	19995460	chr20:19995460:C:G	rs181309002	C	G	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr20	20056577	20056578	chr20:20056578:T:C	rs1509573	T	C	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr20	20308219	20308220	chr20:20308220:G:A	rs1927335	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr20	20367035	20367036	chr20:20367036:G:A	rs1010416622	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr20	20440956	20440957	chr20:20440957:T:C	rs575182259	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr20	20521008	20521009	chr20:20521009:T:G	rs75943391	T	G	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr20	21096462	21096463	chr20:21096463:G:A	rs910976	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr20	22243110	22243111	chr20:22243111:T:A	rs56012879	T	A	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr20	22260827	22260828	chr20:22260828:T:A	rs1337908	T	A	T	Sox1.mouse_HMG_4	5	1	-	4.582329005230607	3.94244191175373	TGGATAAACATGCA
chr20	23099462	23099463	chr20:23099463:A:G	rs844816	A	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr20	23118219	23118220	chr20:23118220:A:G	rs844861	A	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr20	23118234	23118235	chr20:23118235:C:T	rs844862	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr20	23118248	23118249	chr20:23118249:A:G	rs844863	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr20	23272323	23272324	chr20:23272324:A:G	rs4815188	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr20	23297142	23297143	chr20:23297143:C:A	rs74491027	C	A	C	Sox1.mouse_HMG_4	7	1	-	3.69197127314741	4.907642345656242	GGAAAAGGCATTCA
chr20	23340747	23340748	chr20:23340748:A:C	rs6036385	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr20	23349056	23349057	chr20:23349057:T:C	rs3761277	T	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr20	23515928	23515929	chr20:23515929:A:T	rs1027764433	A	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr20	23527935	23527936	chr20:23527936:C:T	rs2983304	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr20	23833380	23833381	chr20:23833381:G:C	rs4458285	G	C	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr20	24007868	24007869	chr20:24007869:G:C	rs4390824	G	C	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr20	24007925	24007926	chr20:24007926:A:G	rs6049303	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr20	24106517	24106518	chr20:24106518:T:C	rs6036649	T	C	T	Sox1.mouse_HMG_4	3	1	-	5.9020699506044245	-0.9853499591997732	TGAATTCCAATTCT
chr20	24149283	24149284	chr20:24149284:G:C	rs6114501	G	C	G	Sox1.mouse_HMG_4	8	1	-	4.405126609745628	-1.6568662960518898	TGACTCATCATGCA
chr20	24353776	24353777	chr20:24353777:A:T	rs6049620	A	T	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr20	24647287	24647288	chr20:24647288:A:G	rs192464377	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr20	24781983	24781984	chr20:24781984:A:T	rs114179289	A	T	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr20	24869224	24869225	chr20:24869225:G:A	rs6050056	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr20	25010505	25010506	chr20:25010506:T:A	rs56033853	T	A	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr20	25052571	25052572	chr20:25052572:T:C	rs148845018	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr20	25061228	25061229	chr20:25061229:G:A	rs77131132	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr20	25250222	25250223	chr20:25250223:T:G	rs140121744	T	G	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr20	25251460	25251461	chr20:25251461:A:C	rs1555330	A	C	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr20	25251493	25251494	chr20:25251494:A:G	rs67049380	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr20	25506740	25506741	chr20:25506741:G:T	rs6115200	G	T	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr20	25907299	25907300	chr20:25907300:T:A	rs6138716	T	A	.	Sox1.mouse_HMG_4	9	1	-	5.080404009306935	-1.7953651238173445	TGGACTGTCATTCA
chr20	29443941	29443942	chr20:29443942:T:C	rs1356349735	T	C	.	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr20	30512424	30512425	chr20:30512425:C:G	chr20:30512425:C:G	C	G	.	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr20	31549670	31549671	chr20:31549671:C:T	rs6059930	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr20	31593487	31593488	chr20:31593488:G:A	rs142283645	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr20	31593519	31593520	chr20:31593520:G:T	rs73235764	G	T	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr20	31963362	31963363	chr20:31963363:C:T	rs138392498	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr20	32949720	32949721	chr20:32949721:A:G	rs8115664	A	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr20	33199184	33199185	chr20:33199185:C:T	rs6057751	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr20	33233736	33233737	chr20:33233737:G:A	rs6059173	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr20	33296334	33296335	chr20:33296335:C:T	rs13045884	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr20	34069380	34069381	chr20:34069381:A:G	chr20:34069381:A:G	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr20	34236577	34236578	chr20:34236578:C:T	rs11907139	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr20	34251647	34251648	chr20:34251648:A:G	rs819164	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr20	35176147	35176148	chr20:35176148:C:T	rs2069952	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr20	35257881	35257882	chr20:35257882:C:T	rs115973587	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr20	35363391	35363392	chr20:35363392:A:G	rs1252320964	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr20	36298271	36298272	chr20:36298272:G:C	rs1374809018	G	C	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr20	36315244	36315245	chr20:36315245:T:C	rs921023369	T	C	T	Sox1.mouse_HMG_4	6	1	+	7.044815396813345	6.522601781573169	TGAATATAAACTCA
chr20	36397358	36397359	chr20:36397359:T:C	rs4812795	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr20	36918471	36918472	chr20:36918472:T:A	rs116789513	T	A	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr20	37466485	37466486	chr20:37466486:C:T	rs2425335	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr20	37473731	37473732	chr20:37473732:T:C	rs115055556	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr20	37579070	37579071	chr20:37579071:T:G	rs17785805	T	G	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr20	37579106	37579107	chr20:37579107:C:T	rs6095371	C	T	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr20	37678327	37678328	chr20:37678328:A:G	rs7363432	A	G	G	Sox1.mouse_HMG_4	9	1	+	8.544108219225832	5.1792873317228265	TGAACAAATATTCC
chr20	37867354	37867355	chr20:37867355:A:G	rs4811246	A	G	G	Sox1.mouse_HMG_4	9	1	+	7.540888082795328	4.17606719529232	TGAATACTCATCCA
chr20	38120923	38120924	chr20:38120924:G:A	rs112046184	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr20	38173720	38173721	chr20:38173721:G:A	rs1165966519	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr20	38258616	38258617	chr20:38258617:A:G	rs59397942	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr20	38259408	38259409	chr20:38259409:T:C	rs6127574	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr20	38278564	38278565	chr20:38278565:G:A	rs138779895	G	A	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr20	38278572	38278573	chr20:38278573:G:C	rs141739465	G	C	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr20	38841809	38841810	chr20:38841810:G:A	rs4368395	G	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr20	39092939	39092940	chr20:39092940:A:G	rs117253689	A	G	A	Sox1.mouse_HMG_4	5	1	-	3.816212780515907	0.8963843703868204	AGAACTCCTATTCA
chr20	39100944	39100945	chr20:39100945:G:A	rs6129179	G	A	g	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr20	39112593	39112594	chr20:39112594:C:G	rs78544478	C	G	c	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr20	39640822	39640823	chr20:39640823:A:G	rs294416	A	G	A	Sox1.mouse_HMG_4	0	1	-	10.68683438560773	6.785284638433131	TGAATCAAAATTCA
chr20	39676954	39676955	chr20:39676955:C:T	rs744785	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr20	39814769	39814770	chr20:39814770:A:G	rs985008	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr20	39852540	39852541	chr20:39852541:A:G	rs6028687	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr20	40719614	40719615	chr20:40719615:G:T	rs77195726	G	T	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr20	40755238	40755239	chr20:40755239:C:G	rs73906644	C	G	c	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr20	40755239	40755240	chr20:40755240:C:A	rs73906645	C	A	c	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr20	40810625	40810626	chr20:40810626:C:T	rs34441976	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr20	40982742	40982743	chr20:40982743:G:A	rs60297313	G	A	-	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr20	40982897	40982898	chr20:40982898:A:C	rs57294335	A	C	A	Sox1.mouse_HMG_4	6	1	-	8.815116346092612	9.22266243479597	TGAATTTGAATGCA
chr20	41249979	41249980	chr20:41249980:A:G	rs6029588	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr20	41316576	41316577	chr20:41316577:G:C	rs75202065	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr20	41329321	41329322	chr20:41329322:T:C	rs6065333	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr20	41924019	41924020	chr20:41924020:G:A	rs6124394	G	A	A	Sox1.mouse_HMG_4	1	1	+	3.8152654314276733	-3.0934893478875445	TGAGCACCAATTCA
chr20	43029560	43029561	chr20:43029561:G:A	rs12481460	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr20	43265497	43265498	chr20:43265498:T:C	rs6016998	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr20	43372440	43372441	chr20:43372441:C:T	rs6017022	C	T	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr20	43560166	43560167	chr20:43560167:T:C	rs111648462	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr20	43682170	43682171	chr20:43682171:A:T	rs419842	A	T	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr20	43799053	43799054	chr20:43799054:T:C	rs78420773	T	C	T	Sox1.mouse_HMG_4	6	1	-	3.9947828204528015	4.076363549880092	TGAATTACCATGCT
chr20	43870713	43870714	chr20:43870714:A:G	rs565871472	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr20	44167209	44167210	chr20:44167210:A:G	rs2179680	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr20	44342000	44342001	chr20:44342001:G:C	rs4810423	G	C	C	Sox1.mouse_HMG_4	8	1	-	7.291624879658305	1.2296319738607864	TGACTTGACAGTCA
chr20	44389619	44389620	chr20:44389620:G:A	rs4812831	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr20	44579591	44579592	chr20:44579592:T:G	rs112899167	T	G	T	Sox1.mouse_HMG_4	13	1	-	3.8269162081075905	0.22883465753582488	TGAACACCACTTCA
chr20	44591334	44591335	chr20:44591335:T:C	rs244104	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr20	44616381	44616382	chr20:44616382:A:G	rs189201147	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.482378263598631	-1.3933908695256518	TGAACAGCCATTGA
chr20	44678465	44678466	chr20:44678466:G:A	rs6130665	G	A	g	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr20	44960991	44960992	chr20:44960992:C:G	rs2180292	C	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr20	45104373	45104374	chr20:45104374:C:G	rs6094093	C	G	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr20	45135326	45135327	chr20:45135327:T:C	rs35882692	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr20	45154310	45154311	chr20:45154311:T:G	rs34916007	T	G	G	Sox1.mouse_HMG_4	9	1	-	4.222130512052558	-2.6536386210717238	TAAATGGACATGCA
chr20	45272661	45272662	chr20:45272662:A:C	rs6104085	A	C	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr20	45405045	45405046	chr20:45405046:G:T	rs3091685	G	T	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr20	46059135	46059136	chr20:46059136:G:C	rs140100514	G	C	G	Sox1.mouse_HMG_4	12	1	-	3.778522382379652	-3.1302323969355674	GGAACGAGCATGCA
chr20	46634646	46634647	chr20:46634647:G:A	rs74762546	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr20	46884017	46884018	chr20:46884018:C:T	rs77046519	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr20	46969924	46969925	chr20:46969925:G:A	rs6063048	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr20	47038775	47038776	chr20:47038776:T:C	rs6066178	T	C	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr20	47067176	47067177	chr20:47067177:A:G	rs147784599	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.822346558088981	-2.086408221226238	TGAGTCATCATTCA
chr20	47204557	47204558	chr20:47204558:A:G	rs6018340	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr20	47304757	47304758	chr20:47304758:G:A	rs977139477	G	A	g	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr20	47576664	47576665	chr20:47576665:A:G	rs6094739	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr20	47576671	47576672	chr20:47576672:G:C	rs561583688	G	C	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr20	47663731	47663732	chr20:47663732:A:C	rs73312170	A	C	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr20	47688873	47688874	chr20:47688874:T:C	rs60211866	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr20	47817814	47817815	chr20:47817815:T:G	rs73913050	T	G	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr20	47817836	47817837	chr20:47817837:C:A	rs73913051	C	A	C	Sox1.mouse_HMG_4	13	1	+	4.243877738862402	7.841959289434167	TGACCAGCAATTCC
chr20	47865565	47865566	chr20:47865566:C:T	rs8121373	C	T	T	Sox1.mouse_HMG_4	1	1	-	6.470647546454735	-0.43810723286048625	CGAATGGAAATGCA
chr20	47927696	47927697	chr20:47927697:C:T	rs151123472	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr20	48065010	48065011	chr20:48065011:G:A	rs74901006	G	A	g	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr20	49010632	49010633	chr20:49010633:G:T	rs6095396	G	T	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr20	49219785	49219786	chr20:49219786:A:C	rs187636429	A	C	a	Sox1.mouse_HMG_4	7	1	+	4.675128626432792	4.701459871794612	TGAACTGATATTTA
chr20	49268834	49268835	chr20:49268835:C:A	rs150640059	C	A	C	Sox1.mouse_HMG_4	12	1	+	4.73166222013391	-2.17709255918131	TTAATAAACAGTCA
chr20	49288382	49288383	chr20:49288383:T:C	rs237738	T	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr20	49360798	49360799	chr20:49360799:T:C	rs56107323	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr20	49394470	49394471	chr20:49394471:G:A	rs756529	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.602152305156897	-2.306602474158323	TGAACAAGCGGTCA
chr20	49411961	49411962	chr20:49411962:A:T	rs6067093	A	T	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr20	49558874	49558875	chr20:49558875:G:A	rs6019897	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr20	49616370	49616371	chr20:49616371:G:C	rs1490342929	G	C	G	Sox1.mouse_HMG_4	7	1	-	4.360361153530076	3.382602920206427	GGAATCACCATGCA
chr20	49656423	49656424	chr20:49656424:A:G	rs573888859	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr20	49666833	49666834	chr20:49666834:C:T	rs3787325	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr20	49714902	49714903	chr20:49714903:A:G	rs68038207	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr20	49714904	49714905	chr20:49714905:G:C	rs61659879	G	C	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr20	49732965	49732966	chr20:49732966:A:G	rs6095630	A	G	a	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr20	49792077	49792078	chr20:49792078:G:T	rs1475451	G	T	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr20	49859709	49859710	chr20:49859710:G:A	rs559883	G	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr20	49859728	49859729	chr20:49859729:C:G	rs686996	C	G	C	Sox1.mouse_HMG_4	12	1	+	6.500371387507594	-0.4083833918076267	TGAATTCATTTTCA
chr20	50483020	50483021	chr20:50483021:G:A	rs77524719	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr20	50588417	50588418	chr20:50588418:A:C	rs368360993	A	C	A	Sox1.mouse_HMG_4	0	1	-	10.821486245493436	7.224147872721829	TGAACTCCCATTCA
chr20	50638494	50638495	chr20:50638495:G:T	chr20:50638495:G:T	G	T	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr20	50673672	50673673	chr20:50673673:G:A	rs140161917	G	A	G	Sox1.mouse_HMG_4	5	1	+	5.040599040993291	5.482378263598629	TAAACGGCCATTCA
chr20	50852198	50852199	chr20:50852199:A:G	rs13045033	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr20	50932117	50932118	chr20:50932118:G:A	rs78393326	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr20	50932129	50932130	chr20:50932130:C:T	rs192265574	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr20	50972134	50972135	chr20:50972135:T:C	rs6020871	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr20	51055408	51055409	chr20:51055409:T:C	rs911020	T	C	C	Sox1.mouse_HMG_4	11	1	+	4.8651704998056635	-2.0152444143819057	CGAACAGACATTCC
chr20	51122598	51122599	chr20:51122599:T:G	rs230013	T	G	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr20	51178473	51178474	chr20:51178474:A:G	rs2426267	A	G	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr20	51215021	51215022	chr20:51215022:C:G	rs35921442	C	G	C	Sox1.mouse_HMG_4	8	1	+	7.115281607727168	1.0532887019296482	AGAATGCTCATTCA
chr20	51363669	51363670	chr20:51363670:C:T	rs932502	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr20	51485810	51485811	chr20:51485811:A:G	rs747064	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr20	51678085	51678086	chr20:51678086:G:C	rs35853726	G	C	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr20	51715803	51715804	chr20:51715804:T:C	rs2904106	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.79684899372267	0.921079860598389	TTAATATCCATTCA
chr20	51854045	51854046	chr20:51854046:C:T	rs6126354	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr20	51958526	51958527	chr20:51958527:C:T	rs34723708	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr20	52154122	52154123	chr20:52154123:C:T	rs181001504	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr20	52410168	52410169	chr20:52410169:A:G	rs116681534	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr20	52488079	52488080	chr20:52488080:T:C	rs118173873	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr20	52490866	52490867	chr20:52490867:G:A	rs78829954	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr20	52737139	52737140	chr20:52737140:A:C	rs73910932	A	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr20	53154488	53154489	chr20:53154489:G:A	rs6022304	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr20	53408463	53408464	chr20:53408464:C:T	rs4811429	C	T	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr20	53735158	53735159	chr20:53735159:C:A	rs6013778	C	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr20	54027972	54027973	chr20:54027973:G:A	rs6097731	G	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr20	54027974	54027975	chr20:54027975:C:T	rs6091808	C	T	c	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr20	54123873	54123874	chr20:54123874:C:T	rs1052474486	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr20	54162670	54162671	chr20:54162671:G:T	rs6091828	G	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr20	54182576	54182577	chr20:54182577:G:A	rs8120220	G	A	g	Sox1.mouse_HMG_4	8	1	-	7.641007833383836	7.499976535056695	TGAACATGCGTTCA
chr20	54278180	54278181	chr20:54278181:T:C	rs292148	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr20	54293762	54293763	chr20:54293763:G:A	rs1542523	G	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr20	54358906	54358907	chr20:54358907:C:T	rs6091856	C	T	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr20	54450269	54450270	chr20:54450270:T:A	rs16999643	T	A	T	Sox1.mouse_HMG_4	2	1	-	7.130630654883972	0.22187587556875	TCAATTTACATTCA
chr20	54715861	54715862	chr20:54715862:G:A	rs6023544	G	A	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr20	54995600	54995601	chr20:54995601:G:A	rs6098360	G	A	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr20	55205784	55205785	chr20:55205785:C:T	rs6127430	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr20	55488825	55488826	chr20:55488826:T:C	rs6123499	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr20	55965129	55965130	chr20:55965130:G:A	rs115245962	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.63238924031195	0.7236344609967271	TGAACTGTAATTCC
chr20	56090258	56090259	chr20:56090259:G:A	rs116344279	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr20	56238007	56238008	chr20:56238008:T:G	rs80345770	T	G	T	Sox1.mouse_HMG_4	6	1	+	4.129087837980506	4.536633926683864	TGAATCTCTTTTCA
chr20	56348705	56348706	chr20:56348706:T:C	rs6099095	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr20	56579297	56579298	chr20:56579298:G:A	rs6024965	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr20	57002350	57002351	chr20:57002351:G:A	rs1276398	G	A	g	Sox1.mouse_HMG_4	8	1	-	4.435476650263745	4.294445351936605	TGAATATACGGGCA
chr20	57008574	57008575	chr20:57008575:C:T	rs73175907	C	T	C	Sox1.mouse_HMG_4	4	1	+	6.9750245318527035	9.6970413506801	TGAACAAGAATTCC
chr20	57230611	57230612	chr20:57230612:T:C	rs540453361	T	C	T	Sox1.mouse_HMG_4	10	1	+	5.235682707474286	-1.6400864256499947	TGAACCACCATGCA
chr20	57335485	57335486	chr20:57335486:T:G	rs3764674	T	G	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr20	57414004	57414005	chr20:57414005:G:C	rs6070097	G	C	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr20	57469280	57469281	chr20:57469281:C:T	rs16981029	C	T	C	Sox1.mouse_HMG_4	8	1	+	9.573804343831052	9.432773045503913	TGAATTTGCATGCA
chr20	57469283	57469284	chr20:57469284:G:A	rs77812149	G	A	G	Sox1.mouse_HMG_4	11	1	+	9.573804343831052	6.207543532049795	TGAATTTGCATGCA
chr20	57469295	57469296	chr20:57469296:C:T	rs17409421	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr20	57477771	57477772	chr20:57477772:T:G	rs6128046	T	G	T	Sox1.mouse_HMG_4	13	1	-	4.532959895402631	0.9348783448308655	TGAACAGGCATCCA
chr20	57586569	57586570	chr20:57586570:G:A	rs77457421	G	A	g	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr20	57646907	57646908	chr20:57646908:A:G	rs6092513	A	G	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr20	57653543	57653544	chr20:57653544:A:C	rs60710573	A	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr20	57657301	57657302	chr20:57657302:C:T	chr20:57657302:C:T	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr20	57657323	57657324	chr20:57657324:G:A	rs148305033	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr20	57762757	57762758	chr20:57762758:G:C	rs13037273	G	C	G	Sox1.mouse_HMG_4	9	1	-	4.96113946539584	8.472087711017114	TGAATAGTCCTGCA
chr20	57820499	57820500	chr20:57820500:C:T	rs778877381	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr20	58167800	58167801	chr20:58167801:T:C	rs74639209	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr20	58202382	58202383	chr20:58202383:C:T	rs6128287	C	T	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr20	58328841	58328842	chr20:58328842:A:C	rs511145	A	C	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr20	58480062	58480063	chr20:58480063:T:G	chr20:58480063:T:G	T	G	T	Sox1.mouse_HMG_4	2	1	-	5.003308914401002	-1.9054458649142172	GGACCAGCCATTCA
chr20	58597081	58597082	chr20:58597082:C:T	rs150360723	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr20	58746560	58746561	chr20:58746561:C:A	rs77059150	C	A	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr20	58802987	58802988	chr20:58802988:T:G	rs6070615	T	G	G	Sox1.mouse_HMG_4	5	1	-	4.458758329647267	0.8990428260413037	GGATTATTCATTCA
chr20	59150820	59150821	chr20:59150821:C:T	rs114394449	C	T	C	Sox1.mouse_HMG_4	4	1	+	3.9911363208725525	6.713153139699951	CGAACGCTCAGTCA
chr20	59160873	59160874	chr20:59160874:G:A	rs111763546	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr20	59360883	59360884	chr20:59360884:G:A	rs3026522	G	A	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr20	59426100	59426101	chr20:59426101:A:G	rs11905080	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.071688756053864	0.7068678685508576	TGAGTTGCCATGCA
chr20	59677481	59677482	chr20:59677482:C:T	rs12481159	C	T	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr20	59941809	59941810	chr20:59941810:C:T	rs62205074	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.442875573154339	-2.4658792061608814	TGAATGATTGGGCA
chr20	60059275	60059276	chr20:60059276:C:G	rs996439	C	G	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr20	60136878	60136879	chr20:60136879:C:T	rs2208451	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr20	60138762	60138763	chr20:60138763:A:T	rs41307175	A	T	A	Sox1.mouse_HMG_4	10	1	-	4.846573089777611	-2.029196043346669	TGAATAATCATGTA
chr20	60428086	60428087	chr20:60428087:A:G	rs348842	A	G	G	Sox1.mouse_HMG_4	9	1	+	4.086695437997659	0.7218745504946529	TGAAGTGACATGCA
chr20	60447785	60447786	chr20:60447786:G:A	rs113019663	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr20	60447796	60447797	chr20:60447797:G:A	rs6128820	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr20	60564327	60564328	chr20:60564328:C:T	rs817279	C	T	C	Sox1.mouse_HMG_4	1	1	-	14.510793973760698	7.602039194445479	TGAATAATAATTCA
chr20	60694318	60694319	chr20:60694319:G:A	rs6027756	G	A	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr20	60733958	60733959	chr20:60733959:G:A	rs1202006	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr20	61120642	61120643	chr20:61120643:C:A	rs6071496	C	A	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr20	61337690	61337691	chr20:61337691:A:G	rs6129104	A	G	C	Sox1.mouse_HMG_4	9	1	+	4.23267914269022	0.8678582551872136	TGAATTGTCATCCC
chr20	61454153	61454154	chr20:61454154:A:T	rs2427109	A	T	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr20	61487837	61487838	chr20:61487838:T:G	rs6121640	T	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr20	61673637	61673638	chr20:61673638:T:C	rs944257	T	C	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr20	61940763	61940764	chr20:61940764:A:G	rs1776263	A	G	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr20	62042084	62042085	chr20:62042085:C:G	rs6061979	C	G	c	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr20	62539491	62539492	chr20:62539492:G:T	rs961173017	G	T	g	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr20	62557229	62557230	chr20:62557230:T:C	rs6062237	T	C	c	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr20	62558691	62558692	chr20:62558692:A:G	rs6089747	A	G	g	Sox1.mouse_HMG_4	4	1	-	3.318702053470844	0.5966852346434448	TGCATGCCCATGCA
chr20	62609189	62609190	chr20:62609190:T:C	rs112886784	T	C	T	Sox1.mouse_HMG_4	6	1	+	5.312745014080453	4.790531398840277	TGAACATTCATTGA
chr20	62773032	62773033	chr20:62773033:T:C	rs6011263	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr20	62974391	62974392	chr20:62974392:G:A	rs73143863	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr20	63025675	63025676	chr20:63025676:C:T	rs910942	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr20	63025713	63025714	chr20:63025714:A:G	rs910943	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr20	63034518	63034519	chr20:63034519:A:G	rs1060490	A	G	G	Sox1.mouse_HMG_4	9	1	+	7.512548217667676	4.1477273301646695	TCAATACTCATTCA
chr20	63063168	63063169	chr20:63063169:A:G	rs62208976	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr20	63113011	63113012	chr20:63113012:C:T	rs75397077	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr20	63113089	63113090	chr20:63113090:G:A	rs193028723	G	A	g	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr20	63159263	63159264	chr20:63159264:G:A	rs2144456	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr20	63401317	63401318	chr20:63401318:G:A	rs6122438	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr20	63628505	63628506	chr20:63628506:T:C	rs117699385	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr20	64076621	64076622	chr20:64076622:G:C	rs138539292	G	C	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr21	8993342	8993343	chr21:8993343:C:T	rs374724529	C	T	.	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr21	8993346	8993347	chr21:8993347:T:C	rs74621953	T	C	.	Sox1.mouse_HMG_4	12	1	-	6.697908016421597	6.697908016421597	TGAATTAAAATTAA
chr21	8993371	8993372	chr21:8993372:G:A	rs368831088	G	A	.	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr21	9004817	9004818	chr21:9004818:C:G	rs371871158	C	G	.	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr21	9009386	9009387	chr21:9009387:C:A	rs376959609	C	A	.	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr21	9010970	9010971	chr21:9010971:T:C	rs892719920	T	C	.	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr21	9010984	9010985	chr21:9010985:C:G	rs76531191	C	G	.	Sox1.mouse_HMG_4	12	1	+	10.585011862995172	3.6762570836799515	TGAACTTCAATTCA
chr21	9028776	9028777	chr21:9028777:C:T	rs78312996	C	T	c	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr21	9037109	9037110	chr21:9037110:T:C	rs79637377	T	C	N	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr21	9248130	9248131	chr21:9248131:G:A	rs1356147929	G	A	.	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr21	9875864	9875865	chr21:9875865:C:T	rs1219661943	C	T	c	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr21	13003836	13003837	chr21:13003837:A:T	rs13313847	A	T	.	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr21	14223421	14223422	chr21:14223422:A:G	rs79064918	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr21	14260175	14260176	chr21:14260176:G:A	rs990982333	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr21	14548143	14548144	chr21:14548144:A:G	rs12482945	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr21	14589891	14589892	chr21:14589892:C:T	rs458220	C	T	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr21	14754349	14754350	chr21:14754350:G:T	rs9636841	G	T	G	Sox1.mouse_HMG_4	6	1	-	6.905646770381739	7.753825744897983	TGAATTCTCTTTCA
chr21	15016253	15016254	chr21:15016254:G:T	rs73172390	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr21	15433173	15433174	chr21:15433174:T:C	rs2823273	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.581280216695784	1.2164593291927777	AGAATCAACATTCA
chr21	15433996	15433997	chr21:15433997:C:A	rs1736015	C	A	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr21	15500516	15500517	chr21:15500517:C:A	rs8133690	C	A	C	Sox1.mouse_HMG_4	6	1	-	8.09314357350479	7.685597484801432	TGAATAGCTGTGCA
chr21	15639563	15639564	chr21:15639564:A:G	rs1008192599	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr21	15782614	15782615	chr21:15782615:C:G	chr21:15782615:C:G	C	G	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr21	16124489	16124490	chr21:16124490:G:T	rs73367140	G	T	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr21	16286220	16286221	chr21:16286221:G:A	rs2823737	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr21	16533720	16533721	chr21:16533721:T:C	rs77737879	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr21	17492323	17492324	chr21:17492324:G:A	rs73199418	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr21	17795310	17795311	chr21:17795311:A:C	rs76628626	A	C	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr21	18117411	18117412	chr21:18117412:A:G	rs117201619	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr21	19049176	19049177	chr21:19049177:T:G	rs2825324	T	G	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr21	19163740	19163741	chr21:19163741:T:C	rs8134893	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr21	19163772	19163773	chr21:19163773:G:A	rs8129763	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr21	19524225	19524226	chr21:19524226:A:G	rs73213920	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr21	20207705	20207706	chr21:20207706:A:T	rs951076	A	T	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr21	20268164	20268165	chr21:20268165:C:A	rs2826117	C	A	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr21	20455698	20455699	chr21:20455699:A:G	rs62205061	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr21	20685713	20685714	chr21:20685714:G:T	rs9637105	G	T	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr21	20688584	20688585	chr21:20688585:A:G	rs10854443	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr21	20790514	20790515	chr21:20790515:C:A	rs2826520	C	A	C	Sox1.mouse_HMG_4	8	1	+	4.820666262312372	4.061978264573929	TGAAGAACCAGTCA
chr21	20883849	20883850	chr21:20883850:T:C	rs2826590	T	C	T	Sox1.mouse_HMG_4	3	1	-	9.393662933717565	2.5062430239133686	TGAATTCAAAGTCA
chr21	20902970	20902971	chr21:20902971:A:G	rs7275768	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr21	21087662	21087663	chr21:21087663:A:G	rs12373948	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr21	21201610	21201611	chr21:21201611:G:A	rs2826731	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr21	21510830	21510831	chr21:21510831:A:T	rs117978572	A	T	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr21	22247243	22247244	chr21:22247244:A:G	rs111661034	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.313638849499632	0.4378697163753509	GGAACTACAATTCA
chr21	22430226	22430227	chr21:22430227:C:G	rs2212544	C	G	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr21	22438681	22438682	chr21:22438682:A:G	rs147088637	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr21	23472167	23472168	chr21:23472168:A:C	rs11087872	A	C	A	Sox1.mouse_HMG_4	13	1	+	6.370586510142897	2.7725049595711315	TGAATCAGAAGTCA
chr21	24086061	24086062	chr21:24086062:C:T	rs1074252	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr21	24086096	24086097	chr21:24086097:G:A	rs1074254	G	A	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr21	24422917	24422918	chr21:24422918:A:G	rs983239	A	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr21	25388067	25388068	chr21:25388068:A:G	rs56007823	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr21	25464599	25464600	chr21:25464600:T:C	rs58105650	T	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr21	25467021	25467022	chr21:25467022:C:G	rs146374778	C	G	C	Sox1.mouse_HMG_4	11	1	+	7.592847854076802	10.95910866585806	TGAATTGCCATCCA
chr21	25566040	25566041	chr21:25566041:T:C	rs12482371	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr21	25568099	25568100	chr21:25568100:A:C	rs1362894447	A	C	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr21	25593366	25593367	chr21:25593367:A:G	rs2829811	A	G	A	Sox1.mouse_HMG_4	8	1	+	5.938733084083814	0.6354281760247382	TGAAGTCCAATTCA
chr21	25593385	25593386	chr21:25593386:C:T	rs4499512	C	T	t	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr21	25608233	25608234	chr21:25608234:G:T	rs181441341	G	T	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr21	25814089	25814090	chr21:25814090:T:A	rs73156224	T	A	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr21	25885546	25885547	chr21:25885547:T:C	rs7277612	T	C	T	Sox1.mouse_HMG_4	13	1	+	8.060771496245106	11.34543506165131	TGAATATTCATTCT
chr21	26097120	26097121	chr21:26097121:G:A	rs17001704	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr21	26097144	26097145	chr21:26097145:C:T	rs117237025	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr21	26149830	26149831	chr21:26149831:T:C	rs8130440	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr21	26449241	26449242	chr21:26449242:C:T	rs58444164	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr21	26737754	26737755	chr21:26737755:G:A	rs2830444	G	A	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr21	26759808	26759809	chr21:26759809:A:T	rs2006712	A	T	A	Sox1.mouse_HMG_4	7	1	+	4.114084859916357	4.378328944463361	TGAATGGATAAGCA
chr21	26804099	26804100	chr21:26804100:G:C	rs464903	G	C	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr21	26948582	26948583	chr21:26948583:C:G	rs34609314	C	G	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr21	27040956	27040957	chr21:27040957:A:G	rs11701774	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr21	27162013	27162014	chr21:27162014:A:C	rs2830735	A	C	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr21	27196946	27196947	chr21:27196947:C:G	rs13052337	C	G	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr21	27493652	27493653	chr21:27493653:C:A	rs242367	C	A	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr21	27802950	27802951	chr21:27802951:G:C	rs190130560	G	C	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr21	27816506	27816507	chr21:27816507:C:G	rs181707	C	G	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr21	27953648	27953649	chr21:27953649:G:T	rs16981502	G	T	g	Sox1.mouse_HMG_4	12	1	-	7.276643998248322	0.36788921893310156	TGAATACACATACA
chr21	27955290	27955291	chr21:27955291:C:A	rs2092018	C	A	c	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr21	28070002	28070003	chr21:28070003:T:C	rs2831455	T	C	t	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr21	28070014	28070015	chr21:28070015:A:G	rs2831456	A	G	g	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr21	28179075	28179076	chr21:28179076:T:C	rs2831611	T	C	t	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr21	28410471	28410472	chr21:28410472:A:G	rs2831778	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.397794972317683	1.6757781534902836	TGAATGGCCAGTGA
chr21	28605605	28605606	chr21:28605606:C:T	rs77441725	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr21	28754248	28754249	chr21:28754249:C:T	rs68036372	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr21	28811902	28811903	chr21:28811903:A:C	rs2205442	A	C	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr21	29091274	29091275	chr21:29091275:T:G	rs76218876	T	G	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr21	29126193	29126194	chr21:29126194:G:A	rs7283853	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr21	29814678	29814679	chr21:29814679:C:A	rs378494	C	A	a	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr21	29859780	29859781	chr21:29859781:T:C	rs467506	T	C	T	Sox1.mouse_HMG_4	8	1	-	6.009803608384445	0.7064987003253687	TGACTACAAATTCC
chr21	30057317	30057318	chr21:30057318:C:T	rs7276462	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr21	30850536	30850537	chr21:30850537:T:C	rs8134243	T	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr21	31086376	31086377	chr21:31086377:A:T	rs4817382	A	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr21	31294185	31294186	chr21:31294186:T:C	rs149937362	T	C	T	Sox1.mouse_HMG_4	6	1	-	8.949383602099976	9.030964331527267	TGAACAATCATTCC
chr21	31347737	31347738	chr21:31347738:G:A	rs11701351	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.662832741695835	4.521801443368695	TGAACGTCCGTGCA
chr21	31397614	31397615	chr21:31397615:C:A	rs766033665	C	A	C	Sox1.mouse_HMG_4	5	1	+	4.015505510878352	7.575221014484316	TGAAACCTCATTCA
chr21	32071826	32071827	chr21:32071827:C:T	rs77166591	C	T	c	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr21	32189189	32189190	chr21:32189190:A:G	rs16989128	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr21	32464182	32464183	chr21:32464183:A:G	rs148921799	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr21	32464188	32464189	chr21:32464189:T:C	rs2833843	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr21	32787022	32787023	chr21:32787023:G:A	rs7282022	G	A	G	Sox1.mouse_HMG_4	7	1	-	4.557429567031607	4.795342406216791	TGAACTACCATGCC
chr21	32867360	32867361	chr21:32867361:T:C	rs76578768	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr21	32886431	32886432	chr21:32886432:C:G	rs7279255	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr21	32926665	32926666	chr21:32926666:G:A	rs12626790	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr21	32946562	32946563	chr21:32946563:A:G	rs2834022	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr21	33019407	33019408	chr21:33019408:A:G	rs62216111	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.874006160445348	4.636093321260165	TGAATAGTCGTGCC
chr21	33307182	33307183	chr21:33307183:C:A	chr21:33307183:C:A	C	A	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr21	33326618	33326619	chr21:33326619:A:G	rs2226299	A	G	G	Sox1.mouse_HMG_4	13	1	+	4.587112728266516	-2.2956323877114535	TGAATGATCTGTCA
chr21	33504762	33504763	chr21:33504763:T:C	rs7283354	T	C	-	Sox1.mouse_HMG_4	10	1	+	12.364801797552026	5.4890326644277465	TGAACAGACATTCA
chr21	33540510	33540511	chr21:33540511:G:C	rs80247044	G	C	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr21	34339321	34339322	chr21:34339322:G:C	rs727810	G	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr21	34634519	34634520	chr21:34634520:C:A	rs9975604	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr21	34722292	34722293	chr21:34722293:C:A	rs9984461	C	A	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr21	34815311	34815312	chr21:34815312:T:C	rs7280428	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr21	34869631	34869632	chr21:34869632:T:C	rs2252585	T	C	C	Sox1.mouse_HMG_4	13	1	-	8.46943285180418	1.586687735826211	TGAACATCCATGCA
chr21	34968518	34968519	chr21:34968519:T:C	rs9974986	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr21	34968558	34968559	chr21:34968559:C:T	rs2834703	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr21	35035232	35035233	chr21:35035233:C:G	rs73203055	C	G	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr21	35090436	35090437	chr21:35090437:C:T	rs7281007	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr21	35142632	35142633	chr21:35142633:T:C	rs57768380	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr21	35157475	35157476	chr21:35157476:C:T	rs73210905	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr21	35197852	35197853	chr21:35197853:A:G	rs62216996	A	G	A	Sox1.mouse_HMG_4	2	1	+	8.301276623284071	1.3925218439688505	TGAATAGTTATTGA
chr21	35204201	35204202	chr21:35204202:C:T	rs2834839	C	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr21	36035467	36035468	chr21:36035468:G:T	rs144212092	G	T	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr21	36464412	36464413	chr21:36464413:G:A	rs219765	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr21	36636156	36636157	chr21:36636157:C:T	rs6517369	C	T	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr21	36646168	36646169	chr21:36646169:A:C	rs756548	A	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr21	36646192	36646193	chr21:36646193:C:T	rs969408	C	T	T	Sox1.mouse_HMG_4	11	1	+	4.760002085261561	11.64041699944913	TGAATAAACAGCCA
chr21	36745787	36745788	chr21:36745788:G:C	rs9982519	G	C	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr21	36793000	36793001	chr21:36793001:C:T	rs34820991	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr21	36979824	36979825	chr21:36979825:A:G	rs6517397	A	G	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr21	37030300	37030301	chr21:37030301:A:C	rs9978550	A	C	c	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr21	37103075	37103076	chr21:37103076:A:G	rs111558447	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr21	37103097	37103098	chr21:37103098:G:A	rs59637309	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr21	37199180	37199181	chr21:37199181:G:C	rs1034357	G	C	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr21	37338877	37338878	chr21:37338878:C:A	rs2007547	C	A	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr21	37339906	37339907	chr21:37339907:T:C	rs1892563	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr21	37408825	37408826	chr21:37408826:C:T	rs12481879	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr21	37517655	37517656	chr21:37517656:G:C	rs13046383	G	C	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr21	37517662	37517663	chr21:37517663:A:G	rs9974133	A	G	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr21	37517671	37517672	chr21:37517672:T:C	rs2835776	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.582398349060997	0.6808486018863975	TGAACACCCAGGCA
chr21	37644607	37644608	chr21:37644608:G:C	rs1787423	G	C	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr21	37713603	37713604	chr21:37713604:C:T	rs2835910	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr21	37746999	37747000	chr21:37747000:A:G	rs2835925	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr21	37747041	37747042	chr21:37747042:G:A	rs79357737	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr21	37761837	37761838	chr21:37761838:G:A	rs3787829	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr21	37805289	37805290	chr21:37805290:G:A	rs9305627	G	A	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr21	38171289	38171290	chr21:38171290:C:T	rs76473352	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr21	38281135	38281136	chr21:38281136:G:A	rs9982723	G	A	G	Sox1.mouse_HMG_4	7	1	+	5.313221057492129	6.264648045453956	GGAATTCGTATGCA
chr21	38718698	38718699	chr21:38718699:G:T	rs2836640	G	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr21	39022550	39022551	chr21:39022551:A:G	rs113255042	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr21	39043445	39043446	chr21:39043446:T:C	rs2836855	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr21	39520167	39520168	chr21:39520168:C:T	rs2837063	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr21	39531999	39532000	chr21:39532000:A:G	rs928290	A	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr21	39532000	39532001	chr21:39532001:C:T	rs34857483	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr21	39644122	39644123	chr21:39644123:G:A	rs490561	G	A	A	Sox1.mouse_HMG_4	5	1	+	8.000528699005871	8.442307921611212	TAAATGGTCATTCA
chr21	39791305	39791306	chr21:39791306:T:C	rs2837223	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr21	39845988	39845989	chr21:39845989:T:C	rs9982859	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr21	39869366	39869367	chr21:39869367:C:T	rs62235427	C	T	C	Sox1.mouse_HMG_4	4	1	+	3.9547951555334393	6.67681197436084	TGAACGGGTAATCA
chr21	39912596	39912597	chr21:39912597:C:T	rs9808735	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr21	40090832	40090833	chr21:40090833:G:C	rs7275547	G	C	G	Sox1.mouse_HMG_4	7	1	-	4.365518132068068	3.3877598987444184	CGAAGAGCCATTCA
chr21	40105360	40105361	chr21:40105361:C:T	rs2410213	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr21	40337926	40337927	chr21:40337927:T:A	rs2837573	T	A	T	Sox1.mouse_HMG_4	0	1	+	4.732613742221487	-2.1316284244289045	TGAAGATTCAGTCA
chr21	40404118	40404119	chr21:40404119:A:G	rs76750953	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr21	40463454	40463455	chr21:40463455:T:C	rs8133816	T	C	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr21	40639552	40639553	chr21:40639553:T:C	rs76137892	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr21	40787539	40787540	chr21:40787540:A:G	rs9284469	A	G	A	Sox1.mouse_HMG_4	8	1	-	5.24398462405045	5.3850159223775895	TGAACCACTGTTCA
chr21	41107588	41107589	chr21:41107589:A:G	rs2837956	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.5367676040309535	-2.339001529093327	TGTATCAACATTCA
chr21	41170539	41170540	chr21:41170540:T:C	rs73902938	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr21	41170547	41170548	chr21:41170548:C:G	rs75711249	C	G	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr21	41313116	41313117	chr21:41313117:C:T	rs2838008	C	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr21	41407480	41407481	chr21:41407481:C:T	rs13048056	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.8132429495612	-2.095511829754021	TGGATAGACAGTCA
chr21	41428348	41428349	chr21:41428349:T:G	rs139475739	T	G	T	Sox1.mouse_HMG_4	0	1	+	5.477381887747831	1.8800435149762211	TGAGCAGACATTCA
chr21	41431912	41431913	chr21:41431913:C:T	rs456657	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr21	41431930	41431931	chr21:41431931:A:G	rs463856	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr21	41507475	41507476	chr21:41507476:A:T	rs112467088	A	T	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr21	41554658	41554659	chr21:41554659:G:A	rs2838062	G	A	G	Sox1.mouse_HMG_4	4	1	-	6.863637946063236	9.585654764890636	TGACCTCATATTCA
chr21	41643595	41643596	chr21:41643596:T:C	rs7282146	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr21	41723055	41723056	chr21:41723056:C:T	rs3842986	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr21	41786858	41786859	chr21:41786859:C:T	rs74628837	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr21	41808906	41808907	chr21:41808907:G:A	rs9978034	G	A	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr21	41824116	41824117	chr21:41824117:A:G	rs28501984	A	G	G	Sox1.mouse_HMG_4	4	1	-	4.635396574782072	1.913379755954672	GGAATAGCCATCCA
chr21	41861657	41861658	chr21:41861658:C:A	rs62621406	C	A	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr21	41866552	41866553	chr21:41866553:C:G	rs17766544	C	G	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr21	41974761	41974762	chr21:41974762:C:A	rs7276077	C	A	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr21	42159298	42159299	chr21:42159299:G:A	rs220190	G	A	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr21	42416976	42416977	chr21:42416977:C:A	rs7277004	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr21	42659898	42659899	chr21:42659899:C:T	rs71320536	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr21	42716341	42716342	chr21:42716342:T:C	rs8130333	T	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr21	42812217	42812218	chr21:42812218:C:T	rs9977922	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr21	42832822	42832823	chr21:42832823:G:A	rs8134696	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr21	43206913	43206914	chr21:43206914:T:C	rs77340799	T	C	.	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr21	43355914	43355915	chr21:43355915:A:C	rs78036124	A	C	.	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr21	43372122	43372123	chr21:43372123:A:G	rs592109	A	G	.	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr21	43995839	43995840	chr21:43995840:C:G	rs79541509	C	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr21	44445283	44445284	chr21:44445284:C:T	rs4818921	C	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr21	44467440	44467441	chr21:44467441:T:C	rs1984326	T	C	C	Sox1.mouse_HMG_4	13	1	-	6.908864097548053	0.0261189815700833	TGAACGTGTATGCA
chr21	44582043	44582044	chr21:44582044:T:C	rs17004679	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr21	44684565	44684566	chr21:44684566:T:C	rs5013903	T	C	C	Sox1.mouse_HMG_4	7	1	-	5.348001366100607	4.396574378138779	TGAACAGATTTTCA
chr21	44865608	44865609	chr21:44865609:A:G	rs533248361	A	G	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr21	44865645	44865646	chr21:44865646:C:T	rs235282	C	T	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr21	44872340	44872341	chr21:44872341:A:G	rs2282116	A	G	A	Sox1.mouse_HMG_4	5	1	+	7.809817963608763	7.368038741003426	GGAATAAACATTCC
chr21	44969273	44969274	chr21:44969274:C:T	rs12106389	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr21	44969296	44969297	chr21:44969297:A:G	rs79794356	A	G	A	Sox1.mouse_HMG_4	7	1	+	4.452874539206395	3.501447551244567	TGACCGAACATTCC
chr21	45081577	45081578	chr21:45081578:C:G	rs3788155	C	G	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr21	45114275	45114276	chr21:45114276:A:C	rs423726	A	C	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr21	45161794	45161795	chr21:45161795:G:A	rs2104812	G	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr21	45247186	45247187	chr21:45247187:T:G	rs927607662	T	G	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr21	45307908	45307909	chr21:45307909:G:C	rs113532928	G	C	-	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr21	45350219	45350220	chr21:45350220:G:A	rs2838890	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr21	45350238	45350239	chr21:45350239:A:G	rs6518227	A	G	A	Sox1.mouse_HMG_4	10	1	-	6.959517486141101	0.08374835301681904	TGAATGCTTGTGCA
chr21	45436394	45436395	chr21:45436395:G:A	rs112836219	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr21	45559731	45559732	chr21:45559732:T:C	rs1475597	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr21	45736937	45736938	chr21:45736938:G:A	rs79854527	G	A	G	Sox1.mouse_HMG_4	10	1	+	3.8948016077903116	0.383853362169037	TGAATAGGCCGTCA
chr21	46162545	46162546	chr21:46162546:C:A	rs116575934	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr21	46216642	46216643	chr21:46216643:G:A	rs76489504	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr21	46369612	46369613	chr21:46369613:T:G	rs2839229	T	G	T	Sox1.mouse_HMG_4	13	1	-	8.067747479098792	4.469665928527027	TGAATATTCTTTCA
chr21	46454354	46454355	chr21:46454355:T:C	rs1123540	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr21	46475393	46475394	chr21:46475394:G:A	rs2839275	G	A	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr21	46545927	46545928	chr21:46545928:C:T	rs368417917	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.430780618508622	-2.477974160806598	TGAATGGCCTGTCA
chr22	16774636	16774637	chr22:16774637:C:T	rs766060	C	T	.	Sox1.mouse_HMG_4	1	1	-	7.927635395912047	1.0188806165968258	TGAATAACTAGTCC
chr22	16915721	16915722	chr22:16915722:C:T	rs7288841	C	T	.	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr22	17074797	17074798	chr22:17074798:G:T	rs139001829	G	T	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr22	17102096	17102097	chr22:17102097:G:A	rs140255319	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr22	17489331	17489332	chr22:17489332:C:T	rs7288099	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr22	17592496	17592497	chr22:17592497:T:C	rs3532	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr22	17601301	17601302	chr22:17601302:C:T	rs142511913	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.394874739430977	0.486119960115756	TGGATTTTCATTCA
chr22	17696092	17696093	chr22:17696093:C:T	rs2257083	C	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr22	17866373	17866374	chr22:17866374:T:C	rs964463503	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr22	17892683	17892684	chr22:17892684:T:C	rs4395337	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.33401503097475	0.969194143471743	TGTATCTTTATTCA
chr22	17922249	17922250	chr22:17922250:G:A	rs756994056	G	A	G	Sox1.mouse_HMG_4	9	1	+	6.555012558684401	9.919833446187406	GGAATTCACGTTCA
chr22	17922250	17922251	chr22:17922251:T:C	rs141994580	T	C	T	Sox1.mouse_HMG_4	10	1	+	6.555012558684401	-0.32075657443988015	GGAATTCACGTTCA
chr22	18021548	18021549	chr22:18021549:A:G	rs9605496	A	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr22	18064858	18064859	chr22:18064859:A:G	rs188551850	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr22	18157520	18157521	chr22:18157521:T:C	rs73876571	T	C	.	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr22	18157532	18157533	chr22:18157533:G:A	rs2252257	G	A	.	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr22	18386843	18386844	chr22:18386844:A:C	rs1418518739	A	C	a	Sox1.mouse_HMG_4	3	1	+	9.864986656453306	6.074500900712068	TGAATCCCAATTCA
chr22	19070372	19070373	chr22:19070373:T:C	rs2238753	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr22	19198224	19198225	chr22:19198225:G:A	rs723414	G	A	G	Sox1.mouse_HMG_4	11	1	-	3.366795874694393	10.247210788881961	TGAATGAGCAGCCA
chr22	19646092	19646093	chr22:19646093:C:T	rs56033016	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr22	19659674	19659675	chr22:19659675:A:C	rs118008061	A	C	A	Sox1.mouse_HMG_4	5	1	+	3.9522155792218783	0.3925000756159154	TGACTATCCAGTCC
chr22	19691131	19691132	chr22:19691132:C:T	rs1015939	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr22	19984591	19984592	chr22:19984592:C:T	rs58404178	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr22	20011094	20011095	chr22:20011095:C:G	rs2238794	C	G	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr22	20146918	20146919	chr22:20146919:T:C	rs9606261	T	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr22	20254797	20254798	chr22:20254798:T:A	rs34200203	T	A	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr22	20338541	20338542	chr22:20338542:T:C	rs868651102	T	C	T	Sox1.mouse_HMG_4	9	1	-	9.864986656453306	6.500165768950301	TGAATCCCAATTCA
chr22	20384768	20384769	chr22:20384769:G:C	rs13056016	G	C	g	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr22	20504515	20504516	chr22:20504516:C:T	rs6000285	C	T	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr22	20745189	20745190	chr22:20745190:A:G	rs2072514	A	G	a	Sox1.mouse_HMG_4	3	1	+	6.519395924788133	-0.36802398501606537	TGAATACAAAGGCA
chr22	20918314	20918315	chr22:20918315:G:C	rs529971510	G	C	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr22	20918327	20918328	chr22:20918328:G:T	rs75659674	G	T	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr22	20980372	20980373	chr22:20980373:A:G	rs8136699	A	G	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr22	21071862	21071863	chr22:21071863:C:T	rs415557	C	T	c	Sox1.mouse_HMG_4	8	1	+	7.766064403864771	7.62503310553763	TGAATGGACGTGCA
chr22	21666404	21666405	chr22:21666405:T:C	rs388371	T	C	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr22	21666447	21666448	chr22:21666448:T:G	rs75281100	T	G	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr22	22044327	22044328	chr22:22044328:G:C	rs6000690	G	C	c	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr22	22076283	22076284	chr22:22076284:A:T	rs5750471	A	T	t	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr22	22200988	22200989	chr22:22200989:T:C	rs2330022	T	C	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr22	22379163	22379164	chr22:22379164:A:G	rs55802730	A	G	.	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr22	22430292	22430293	chr22:22430293:A:G	rs148291145	A	G	a	Sox1.mouse_HMG_4	5	1	+	8.328401553477041	7.8866223308717025	TGAACATCTATGCA
chr22	22518494	22518495	chr22:22518495:T:C	rs362015	T	C	-	Sox1.mouse_HMG_4	10	1	+	7.893745411774219	1.0179762786499376	GGAATAAACATGCA
chr22	22768263	22768264	chr22:22768264:A:T	rs6003292	A	T	.	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr22	22850947	22850948	chr22:22850948:T:C	rs383648	T	C	.	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr22	22850949	22850950	chr22:22850950:C:T	rs8140419	C	T	.	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr22	22923945	22923946	chr22:22923946:A:G	rs394409	A	G	.	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr22	22954004	22954005	chr22:22954005:G:A	rs7284782	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.681174714373246	-2.227580064941974	GGAACTAACAGTCA
chr22	23031450	23031451	chr22:23031451:C:T	rs6003477	C	T	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr22	23163900	23163901	chr22:23163901:C:T	rs761422616	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr22	23163947	23163948	chr22:23163948:T:G	rs1807702	T	G	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr22	23408542	23408543	chr22:23408543:T:C	rs4822395	T	C	N	Sox1.mouse_HMG_4	0	1	+	4.939372710979796	1.0378229638051952	TGGACTGTTATTCA
chr22	23408548	23408549	chr22:23408549:G:A	rs4822396	G	A	N	Sox1.mouse_HMG_4	6	1	+	4.939372710979796	4.857791981552506	TGGACTGTTATTCA
chr22	23499364	23499365	chr22:23499365:A:G	rs66629127	A	G	-	Sox1.mouse_HMG_4	3	1	+	3.2347746053053887	-3.652645304498809	TAAATGCCCATTCC
chr22	23820175	23820176	chr22:23820176:A:T	rs80135378	A	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr22	23989876	23989877	chr22:23989877:T:C	rs2739324	T	C	-	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr22	23989879	23989880	chr22:23989880:C:G	rs2739325	C	G	-	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr22	24209969	24209970	chr22:24209970:A:G	rs35146655	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr22	24485812	24485813	chr22:24485813:C:T	rs4822502	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr22	24911441	24911442	chr22:24911442:C:T	rs78172272	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.557429567031607	7.279446385859005	TGAACTACCATGCC
chr22	24985077	24985078	chr22:24985078:G:A	rs11090362	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr22	25021533	25021534	chr22:25021534:A:G	rs990904034	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr22	25164494	25164495	chr22:25164495:T:G	rs9608375	T	G	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr22	25195879	25195880	chr22:25195880:C:T	rs3747120	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr22	25409014	25409015	chr22:25409015:T:C	rs11705442	T	C	t	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr22	25496386	25496387	chr22:25496387:A:G	rs7292539	A	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr22	25509911	25509912	chr22:25509912:G:A	rs742029	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr22	25643810	25643811	chr22:25643811:A:G	rs118177973	A	G	A	Sox1.mouse_HMG_4	9	1	+	5.312745014080454	1.9479241265774474	TAAACATTCATTCA
chr22	25796109	25796110	chr22:25796110:G:A	rs4820656	G	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr22	25829416	25829417	chr22:25829417:A:G	rs7286591	A	G	A	Sox1.mouse_HMG_4	13	1	+	3.8772572201658395	-3.00548789581213	TGAAGGTACATGCA
chr22	26196941	26196942	chr22:26196942:G:C	rs1474602	G	C	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr22	26286073	26286074	chr22:26286074:A:T	rs17394959	A	T	T	Sox1.mouse_HMG_4	10	1	-	3.6765538279107277	-3.1992153052135537	TTAATACCCATTCC
chr22	26360383	26360384	chr22:26360384:T:C	rs535584650	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr22	26527449	26527450	chr22:26527450:C:G	rs2283818	C	G	C	Sox1.mouse_HMG_4	5	1	+	3.7409295382137824	6.8588658192144045	TGAATCCCCATTCT
chr22	26552499	26552500	chr22:26552500:C:A	rs6005078	C	A	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr22	26642888	26642889	chr22:26642889:A:G	rs5761655	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr22	26697145	26697146	chr22:26697146:T:G	rs1543808	T	G	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr22	26889906	26889907	chr22:26889907:G:C	rs16986690	G	C	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr22	27022505	27022506	chr22:27022506:G:T	chr22:27022506:G:T	G	T	G	Sox1.mouse_HMG_4	1	1	+	4.111129828289529	-2.79762495102569	GGAATGGCCAGTCC
chr22	27022834	27022835	chr22:27022835:A:C	rs73882523	A	C	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr22	27107874	27107875	chr22:27107875:C:T	rs4820741	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr22	27194377	27194378	chr22:27194378:T:C	rs491735	T	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr22	27212539	27212540	chr22:27212540:T:G	rs375402716	T	G	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr22	27308286	27308287	chr22:27308287:A:T	rs73430465	A	T	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr22	27312681	27312682	chr22:27312682:A:T	rs8142278	A	T	A	Sox1.mouse_HMG_4	10	1	-	3.2923708081090224	-3.583398325015258	TGCATGCACATGCA
chr22	27313598	27313599	chr22:27313599:G:A	rs5997220	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr22	27518092	27518093	chr22:27518093:G:A	rs7288394	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr22	28043407	28043408	chr22:28043408:C:G	rs79578772	C	G	C	Sox1.mouse_HMG_4	1	1	-	5.905840076673076	-1.0029147026421434	TGAATTCCAGTGCA
chr22	28149340	28149341	chr22:28149341:T:C	rs9608668	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr22	28426281	28426282	chr22:28426282:G:A	rs16986408	G	A	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr22	28597342	28597343	chr22:28597343:A:C	rs9620808	A	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr22	28815446	28815447	chr22:28815447:C:T	rs5762818	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr22	28914302	28914303	chr22:28914303:C:T	rs73881178	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr22	28956506	28956507	chr22:28956507:A:C	rs4055	A	C	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr22	29115528	29115529	chr22:29115529:A:G	rs134688	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr22	29252225	29252226	chr22:29252226:T:A	rs8143132	T	A	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr22	29415231	29415232	chr22:29415232:T:A	rs2106265	T	A	A	Sox1.mouse_HMG_4	9	1	-	6.52349677608438	-0.352272357039902	TGAATTCCTAGGCA
chr22	29443178	29443179	chr22:29443179:T:C	rs5763241	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.5381767435873295	3.6366269964127316	TGAATTGACATTAA
chr22	29485478	29485479	chr22:29485479:G:A	rs3815335	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr22	29734526	29734527	chr22:29734527:C:A	rs140107	C	A	C	Sox1.mouse_HMG_4	6	1	+	7.070768995062338	7.918947969578583	TAAATGCTCATTCA
chr22	29779333	29779334	chr22:29779334:T:G	rs764175316	T	G	t	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr22	29836853	29836854	chr22:29836854:C:T	rs6006274	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.427574761723585	-2.481180017591634	TGAATGGCCGGGCA
chr22	29952662	29952663	chr22:29952663:A:T	rs737904	A	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr22	29983504	29983505	chr22:29983505:T:G	rs16988148	T	G	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr22	30016278	30016279	chr22:30016279:A:G	rs116264235	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr22	30330836	30330837	chr22:30330837:C:G	rs5753071	C	G	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr22	30414964	30414965	chr22:30414965:A:C	rs4820011	A	C	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr22	30635145	30635146	chr22:30635146:C:T	rs9621053	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr22	30776478	30776479	chr22:30776479:T:G	rs136315	T	G	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr22	31217722	31217723	chr22:31217723:C:T	rs114950413	C	T	C	Sox1.mouse_HMG_4	5	1	-	6.592025388148513	7.033804610753852	TGAATGAGTAGGCA
chr22	31220577	31220578	chr22:31220578:C:T	rs1123705	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.321716011568495	7.043732830395894	TGAACTGTAATTAA
chr22	31243522	31243523	chr22:31243523:G:T	rs713947	G	T	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr22	31281005	31281006	chr22:31281006:A:G	rs5997938	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.3193366730201745	0.41778692584557464	TGAATATCTAGACA
chr22	31734766	31734767	chr22:31734767:T:C	rs76897681	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr22	31828686	31828687	chr22:31828687:G:A	rs5998136	G	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr22	31930400	31930401	chr22:31930401:T:G	rs2413060	T	G	T	Sox1.mouse_HMG_4	10	1	+	3.733817616207091	0.3689967287040845	TGAGTAGGCATGCA
chr22	32076471	32076472	chr22:32076472:T:C	rs135111	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr22	32260800	32260801	chr22:32260801:A:G	rs5753897	A	G	N	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr22	32629254	32629255	chr22:32629255:A:G	rs2157168	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr22	32695605	32695606	chr22:32695606:C:T	rs5998588	C	T	T	Sox1.mouse_HMG_4	6	1	-	4.397794972317683	4.316214242890393	TAAATGGCCAGTCA
chr22	32796202	32796203	chr22:32796203:T:C	rs13054779	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr22	33075611	33075612	chr22:33075612:A:C	rs1981469	A	C	A	Sox1.mouse_HMG_4	11	1	-	5.4976790750293825	1.9835249726230713	TCAACAATTATTCA
chr22	33274692	33274693	chr22:33274693:G:A	rs41282597	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr22	33305540	33305541	chr22:33305541:G:A	rs9609757	G	A	g	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr22	33335156	33335157	chr22:33335157:T:C	rs60456272	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr22	33335166	33335167	chr22:33335167:T:C	rs5998884	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr22	33347354	33347355	chr22:33347355:T:C	rs2142550	T	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr22	33569510	33569511	chr22:33569511:A:G	rs3819662	A	G	A	Sox1.mouse_HMG_4	0	1	-	6.522601781573169	2.621052034398568	TGAATACAAACTCA
chr22	33665301	33665302	chr22:33665302:T:G	rs75193855	T	G	T	Sox1.mouse_HMG_4	0	1	+	7.3115332083670435	3.7141948355954346	TGAACACAAGTTCA
chr22	33782330	33782331	chr22:33782331:T:G	rs447336	T	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr22	33823179	33823180	chr22:33823180:T:A	rs5754701	T	A	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr22	34105404	34105405	chr22:34105405:G:A	rs16993568	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr22	34116355	34116356	chr22:34116356:A:G	rs77935842	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr22	34236708	34236709	chr22:34236709:A:T	rs138935266	A	T	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr22	34397039	34397040	chr22:34397040:C:T	rs5755009	C	T	C	Sox1.mouse_HMG_4	10	1	-	7.627630649434004	4.11668240381273	GGAATGACCAGTCA
chr22	34799901	34799902	chr22:34799902:T:C	rs5755298	T	C	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr22	35358088	35358089	chr22:35358089:C:T	rs79453165	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr22	35396888	35396889	chr22:35396889:T:C	rs1262380280	T	C	T	Sox1.mouse_HMG_4	4	1	+	11.34844894528068	8.62643212645328	GGAATAGATATTCA
chr22	35443795	35443796	chr22:35443796:C:G	rs148275964	C	G	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr22	35471264	35471265	chr22:35471265:G:A	rs116601377	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr22	35498400	35498401	chr22:35498401:A:G	rs7291777	A	G	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr22	35696605	35696606	chr22:35696606:A:T	rs5755902	A	T	A	Sox1.mouse_HMG_4	9	1	+	3.992257503380154	-2.8835116297441274	TGAATGTACAGCCA
chr22	35835991	35835992	chr22:35835992:C:T	rs148602529	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr22	36144385	36144386	chr22:36144386:C:T	rs80580	C	T	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr22	36144419	36144420	chr22:36144420:C:T	rs132622	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr22	36230715	36230716	chr22:36230716:T:C	rs56230516	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr22	36239397	36239398	chr22:36239398:A:G	rs136144	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr22	36239398	36239399	chr22:36239399:A:G	rs1974458	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr22	36245258	36245259	chr22:36245259:G:A	rs184404420	G	A	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr22	36318476	36318477	chr22:36318477:G:A	rs139973547	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr22	36329924	36329925	chr22:36329925:C:T	rs16996672	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr22	36398664	36398665	chr22:36398665:G:A	rs75690462	G	A	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr22	36398674	36398675	chr22:36398675:G:A	rs74277070	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.481790578047585	4.400209848620294	TGACCAGTAATTCC
chr22	36617345	36617346	chr22:36617346:A:G	rs738975	A	G	G	Sox1.mouse_HMG_4	4	1	-	7.484935879287691	4.762919060460292	TGAATTAACATACA
chr22	36712637	36712638	chr22:36712638:G:A	rs9610569	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr22	36712676	36712677	chr22:36712677:C:T	rs5756310	C	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr22	36800826	36800827	chr22:36800827:G:A	rs3484	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr22	36966915	36966916	chr22:36966916:G:C	rs8141720	G	C	G	Sox1.mouse_HMG_4	11	1	+	6.902440913596702	3.536180101815443	TGAATTCTCAGGCA
chr22	37004518	37004519	chr22:37004519:C:G	rs2413441	C	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr22	37178455	37178456	chr22:37178456:T:A	rs151131094	T	A	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr22	37181213	37181214	chr22:37181214:G:A	rs56271867	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr22	37198564	37198565	chr22:37198565:C:G	rs229551	C	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr22	37269992	37269993	chr22:37269993:G:A	rs2097361	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.579982286492443	4.4984015570651525	TGAATAGACATTTC
chr22	37283721	37283722	chr22:37283722:A:G	rs1041895	A	G	G	Sox1.mouse_HMG_4	9	1	+	3.602228441677041	0.2374075541740337	TGAATCCCTATCCA
chr22	37285944	37285945	chr22:37285945:G:A	rs5756590	G	A	G	Sox1.mouse_HMG_4	12	1	-	3.8986850553021597	-3.0100697240130607	TGAATCCTCAGTCC
chr22	37308629	37308630	chr22:37308630:C:A	rs6000659	C	A	-	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr22	37419074	37419075	chr22:37419075:G:A	rs192089481	G	A	G	Sox1.mouse_HMG_4	7	1	-	6.800446988419392	7.038359827604573	TGAATGGCAATGCC
chr22	37538865	37538866	chr22:37538866:T:C	rs147705221	T	C	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr22	37573646	37573647	chr22:37573647:T:C	rs151218344	T	C	T	Sox1.mouse_HMG_4	5	1	+	3.1832669794159463	0.26343856928685905	TGAAATCCCATGCA
chr22	37681987	37681988	chr22:37681988:C:G	rs79370216	C	G	c	Sox1.mouse_HMG_4	3	1	+	5.100190455259044	2.003256301196086	GGACCAGTTATTCA
chr22	37791976	37791977	chr22:37791977:T:G	rs112119631	T	G	-	Sox1.mouse_HMG_4	2	1	-	4.035884668181141	-2.8728701111340795	TGAATGAGGATGCA
chr22	37850729	37850730	chr22:37850730:G:C	rs76025187	G	C	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr22	37907147	37907148	chr22:37907148:C:T	rs5750508	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr22	37954114	37954115	chr22:37954115:C:T	rs79969835	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr22	38204745	38204746	chr22:38204746:G:C	rs116099553	G	C	G	Sox1.mouse_HMG_4	8	1	-	4.3182228626562225	-1.7437700431412957	TGAATGAACAGACA
chr22	38314406	38314407	chr22:38314407:G:A	rs135764	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr22	38821995	38821996	chr22:38821996:G:A	rs8140217	G	A	G	Sox1.mouse_HMG_4	1	1	+	5.126167191747166	-1.7825875875680526	GGAACCAACATTCA
chr22	38836500	38836501	chr22:38836501:G:A	rs113002198	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr22	38861391	38861392	chr22:38861392:G:A	rs8141420	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr22	39062159	39062160	chr22:39062160:G:A	rs5750736	G	A	-	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr22	39200283	39200284	chr22:39200284:A:G	rs62228334	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr22	39282915	39282916	chr22:39282916:C:G	rs1044075423	C	G	C	Sox1.mouse_HMG_4	8	1	+	5.058579101497554	-1.0034138042999639	TGAAAAATCAGTCA
chr22	39635200	39635201	chr22:39635201:A:G	rs117655683	A	G	A	Sox1.mouse_HMG_4	3	1	+	13.727845539714238	6.840425629910044	TGAATATGCATTCA
chr22	39702752	39702753	chr22:39702753:C:A	rs113682770	C	A	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr22	39745893	39745894	chr22:39745894:G:A	rs11704363	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr22	39938922	39938923	chr22:39938923:A:G	rs107140	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr22	40155762	40155763	chr22:40155763:C:T	rs1012241	C	T	T	Sox1.mouse_HMG_4	4	1	+	4.96678652275907	7.6888033415864685	TGAACATCTTTTCA
chr22	40329144	40329145	chr22:40329145:A:G	rs13057958	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr22	40480229	40480230	chr22:40480230:T:C	rs6001930	T	C	C	Sox1.mouse_HMG_4	11	1	+	4.508031975492829	-2.3723829386947406	TGAATCTTCAATCA
chr22	40559559	40559560	chr22:40559560:A:T	rs5758007	A	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr22	40621420	40621421	chr22:40621421:C:T	rs6001981	C	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr22	41994088	41994089	chr22:41994089:C:T	rs133301	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr22	42089287	42089288	chr22:42089288:T:C	rs4147640	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr22	42133358	42133359	chr22:42133359:C:G	rs118017929	C	G	-	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr22	42228438	42228439	chr22:42228439:A:C	rs5758661	A	C	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr22	42379941	42379942	chr22:42379942:G:T	rs4822121	G	T	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr22	42379942	42379943	chr22:42379943:T:A	rs4822122	T	A	T	Sox1.mouse_HMG_4	0	1	+	7.688514460000166	0.8242722933497741	TGAACTTCTATGCA
chr22	42414212	42414213	chr22:42414213:A:G	rs79895029	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr22	42499005	42499006	chr22:42499006:T:A	rs56169883	T	A	T	Sox1.mouse_HMG_4	7	1	-	4.255116158243496	4.5193602427905	TGAATGGACTTGCA
chr22	42571856	42571857	chr22:42571857:G:A	rs73173080	G	A	-	Sox1.mouse_HMG_4	4	1	-	6.29120739813675	9.013224216964149	TGAACGTGAATGCA
chr22	42617876	42617877	chr22:42617877:C:T	rs78361912	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr22	42790928	42790929	chr22:42790929:A:G	rs148412817	A	G	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr22	42836966	42836967	chr22:42836967:C:T	rs5758972	C	T	T	Sox1.mouse_HMG_4	0	1	+	3.812471029409739	7.714020776584338	CGAATGACCACTCA
chr22	42923151	42923152	chr22:42923152:T:C	rs738384	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr22	42963123	42963124	chr22:42963124:T:C	rs1569508	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr22	43008100	43008101	chr22:43008101:T:C	rs738381	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr22	43114212	43114213	chr22:43114213:A:G	rs738276	A	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr22	43148816	43148817	chr22:43148817:C:T	rs739092	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr22	43510574	43510575	chr22:43510575:T:G	rs10427865	T	G	.	Sox1.mouse_HMG_4	13	1	-	3.6309020172687783	0.03282046669701266	TGCATAAGCATGCA
chr22	43969351	43969352	chr22:43969352:G:C	rs6006594	G	C	C	Sox1.mouse_HMG_4	1	1	+	5.197723379090565	-1.7110314002246554	TGAACATTTATTCT
chr22	44024783	44024784	chr22:44024784:C:T	rs751058366	C	T	c	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr22	44069057	44069058	chr22:44069058:C:T	rs189322999	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr22	44125244	44125245	chr22:44125245:A:T	rs68108655	A	T	A	Sox1.mouse_HMG_4	0	1	-	12.221499793395672	5.357257626745284	TGAACATTCATTCA
chr22	44215169	44215170	chr22:44215170:G:T	rs139210	G	T	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr22	44291690	44291691	chr22:44291691:C:T	rs73165813	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr22	44309336	44309337	chr22:44309337:G:A	rs116778272	G	A	G	Sox1.mouse_HMG_4	0	1	+	4.107616420612182	0.8407126267334004	GGATTAGTAATTCA
chr22	44368520	44368521	chr22:44368521:T:C	rs9614858	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr22	44427928	44427929	chr22:44427929:T:G	rs7286453	T	G	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr22	44427973	44427974	chr22:44427974:C:T	rs2187829	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr22	44498902	44498903	chr22:44498903:G:A	rs131166	G	A	g	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr22	44521658	44521659	chr22:44521659:A:G	rs6007181	A	G	A	Sox1.mouse_HMG_4	2	1	+	6.785284638433131	-0.12347014088208774	CGAATCAAAATTCA
chr22	44638719	44638720	chr22:44638720:T:C	rs12167325	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr22	44764351	44764352	chr22:44764352:G:C	rs5764992	G	C	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr22	44779429	44779430	chr22:44779430:G:A	rs151046071	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr22	44803043	44803044	chr22:44803044:G:A	rs16992877	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr22	44858322	44858323	chr22:44858323:A:G	rs6007336	A	G	a	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr22	45011157	45011158	chr22:45011158:A:G	rs5766283	A	G	a	Sox1.mouse_HMG_4	2	1	+	4.48896382177631	-2.4197909575389103	TGAGTAACTATGCA
chr22	45121326	45121327	chr22:45121327:C:A	rs62231094	C	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr22	45128156	45128157	chr22:45128157:C:A	rs112320813	C	A	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr22	45128170	45128171	chr22:45128171:T:A	rs6007464	T	A	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr22	45158315	45158316	chr22:45158316:G:A	rs132834	G	A	A	Sox1.mouse_HMG_4	0	1	-	4.21626822997334	8.11781797714794	CGATTAAACATTCA
chr22	45210087	45210088	chr22:45210088:C:T	rs73434154	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr22	45239334	45239335	chr22:45239335:C:T	rs2138149	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr22	45502236	45502237	chr22:45502237:T:C	rs3810633	T	C	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr22	45502249	45502250	chr22:45502250:A:T	rs3810634	A	T	A	Sox1.mouse_HMG_4	11	1	+	6.522056851806128	13.402471765993695	TGAATTCCTATACA
chr22	45578254	45578255	chr22:45578255:G:A	rs966589744	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr22	45578265	45578266	chr22:45578266:A:G	rs57355944	A	G	A	Sox1.mouse_HMG_4	3	1	+	4.454895975649954	-2.432523934154243	GGAATCGTTATTCC
chr22	45782128	45782129	chr22:45782129:T:C	rs10483231	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr22	45807044	45807045	chr22:45807045:A:G	rs3827398	A	G	A	Sox1.mouse_HMG_4	9	1	+	10.87752793643077	7.512707048927764	TGAATTACCATGCA
chr22	45818470	45818471	chr22:45818471:G:T	rs713978	G	T	T	Sox1.mouse_HMG_4	12	1	-	3.6754146299336083	-3.233340149381612	AGAATAAGCATGCA
chr22	45864135	45864136	chr22:45864136:C:T	chr22:45864136:C:T	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr22	45864138	45864139	chr22:45864139:G:A	rs188055281	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr22	45887399	45887400	chr22:45887400:T:C	rs28439621	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr22	46171310	46171311	chr22:46171311:T:C	rs116281012	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr22	46219727	46219728	chr22:46219728:G:A	rs1800246	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr22	46345709	46345710	chr22:46345710:C:T	rs140051	C	T	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr22	46418964	46418965	chr22:46418965:G:A	rs150783536	G	A	G	Sox1.mouse_HMG_4	6	1	-	3.371379452668589	3.8935930679087667	TGAACACGCATGCC
chr22	46477391	46477392	chr22:46477392:C:G	rs3788707	C	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr22	46546171	46546172	chr22:46546172:A:G	rs4823852	A	G	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr22	46663699	46663700	chr22:46663700:A:G	rs2542035	A	G	G	Sox1.mouse_HMG_4	4	1	-	4.292974370079209	1.5709575512518101	AGAATGGCCATGCA
chr22	46829694	46829695	chr22:46829695:C:T	chr22:46829695:C:T	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr22	46863428	46863429	chr22:46863429:G:A	rs9306517	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr22	47053992	47053993	chr22:47053993:C:T	rs562318351	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr22	47054006	47054007	chr22:47054007:C:G	rs86558	C	G	C	Sox1.mouse_HMG_4	12	1	+	4.554459824648932	-2.3542949546662886	TGACTCATCAGTCA
chr22	47162537	47162538	chr22:47162538:A:G	rs34960717	A	G	A	Sox1.mouse_HMG_4	6	1	+	4.6718893258388	4.7534700552660905	TGAACAACAGTGCA
chr22	47236592	47236593	chr22:47236593:A:G	rs113909532	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr22	47366666	47366667	chr22:47366667:C:T	rs74536383	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr22	47366667	47366668	chr22:47366668:G:A	rs145111464	G	A	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr22	47383050	47383051	chr22:47383051:C:T	rs2032479	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr22	47383056	47383057	chr22:47383057:C:T	rs2032480	C	T	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr22	47561396	47561397	chr22:47561397:C:T	rs2064433	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr22	47566850	47566851	chr22:47566851:C:T	rs73471732	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr22	47572700	47572701	chr22:47572701:T:C	rs6007696	T	C	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr22	47624049	47624050	chr22:47624050:G:A	rs910801	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.222940814088435	7.944957632915834	TGAACGATCATTCT
chr22	47682119	47682120	chr22:47682120:C:T	rs399637	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr22	47814696	47814697	chr22:47814697:A:G	rs112992680	A	G	G	Sox1.mouse_HMG_4	10	1	-	3.2923708081090224	-3.583398325015258	TGCATGCACATGCA
chr22	47814719	47814720	chr22:47814720:T:C	rs5768010	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr22	47885639	47885640	chr22:47885640:T:C	rs6008439	T	C	C	Sox1.mouse_HMG_4	13	1	-	4.860672537424762	-2.0220725785532077	AGAACTGACATTCA
chr22	47885647	47885648	chr22:47885648:A:G	rs1983704	A	G	A	Sox1.mouse_HMG_4	5	1	-	4.860672537424762	1.9408441272956745	AGAACTGACATTCA
chr22	47904899	47904900	chr22:47904900:C:T	rs9615666	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr22	48055402	48055403	chr22:48055403:A:G	rs9626802	A	G	A	Sox1.mouse_HMG_4	13	1	+	9.013224216964149	2.1304791009861797	TGAATGTGAATGCA
chr22	48082727	48082728	chr22:48082728:A:T	rs135298	A	T	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr22	48297316	48297317	chr22:48297317:A:G	rs133619	A	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr22	48353850	48353851	chr22:48353851:C:T	rs5767109	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr22	48411214	48411215	chr22:48411215:A:G	rs130819	A	G	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr22	48481044	48481045	chr22:48481045:C:T	rs2338717	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr22	48487121	48487122	chr22:48487122:G:A	rs9615333	G	A	g	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr22	48649915	48649916	chr22:48649916:A:G	rs4450733	A	G	G	Sox1.mouse_HMG_4	13	1	+	3.7512614263313484	-3.131483689646621	TGAAACCACATTCA
chr22	48664842	48664843	chr22:48664843:G:A	rs57382044	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr22	48718757	48718758	chr22:48718758:C:A	rs117004291	C	A	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr22	48760395	48760396	chr22:48760396:G:A	rs139145810	G	A	G	Sox1.mouse_HMG_4	0	1	+	4.532130381056247	1.2652265871774653	GGAATAAACTTTCA
chr22	48760425	48760426	chr22:48760426:G:A	rs4925414	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr22	48857342	48857343	chr22:48857343:C:T	rs4076755	C	T	C	Sox1.mouse_HMG_4	0	1	-	7.017364514102943	3.7504607202241607	GGAATGCTCAGTCA
chr22	48857357	48857358	chr22:48857358:T:A	rs28580007	T	A	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr22	48870853	48870854	chr22:48870854:G:A	rs73427900	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.278511880178473	8.000528699005871	TGGACGGTCATTCA
chr22	48898359	48898360	chr22:48898360:T:G	rs28366792	T	G	G	Sox1.mouse_HMG_4	6	1	-	7.348550362023839	6.500371387507594	TGAATTAATTTTCA
chr22	48899908	48899909	chr22:48899909:G:A	rs73179587	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr22	48920377	48920378	chr22:48920378:G:A	rs1108925	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr22	49005631	49005632	chr22:49005632:T:C	rs71311655	T	C	T	Sox1.mouse_HMG_4	7	1	-	4.019338244027582	3.067911256065755	CGAACACACATGCA
chr22	49005669	49005670	chr22:49005670:C:T	rs62223368	C	T	-	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr22	49005673	49005674	chr22:49005674:T:C	rs8142980	T	C	-	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr22	49142886	49142887	chr22:49142887:T:A	rs6009176	T	A	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr22	49231482	49231483	chr22:49231483:A:G	rs2247286	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr22	49245358	49245359	chr22:49245359:T:G	rs2688141	T	G	G	Sox1.mouse_HMG_4	7	1	-	3.856069736795292	3.8824009821571135	CGAGTGGACATTCA
chr22	49246070	49246071	chr22:49246071:A:G	rs2858632	A	G	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr22	49258585	49258586	chr22:49258586:G:A	rs142480288	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr22	49357797	49357798	chr22:49357798:C:T	rs5770285	C	T	c	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr22	49394908	49394909	chr22:49394909:T:C	rs5770378	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr22	49401877	49401878	chr22:49401878:C:T	rs62234014	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr22	49402627	49402628	chr22:49402628:T:C	rs136767	T	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr22	49431412	49431413	chr22:49431413:G:C	rs136788	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr22	49436136	49436137	chr22:49436137:C:G	rs9616306	C	G	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr22	49609804	49609805	chr22:49609805:G:A	rs71316549	G	A	g	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr22	49671981	49671982	chr22:49671982:A:C	rs530186812	A	C	a	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr22	49688381	49688382	chr22:49688382:C:T	rs11913579	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr22	49763201	49763202	chr22:49763202:A:G	rs6009322	A	G	a	Sox1.mouse_HMG_4	13	1	+	4.255116158243496	-2.6276289577344736	TGAATGGACAAGCA
chr22	49862062	49862063	chr22:49862063:G:A	rs79791383	G	A	g	Sox1.mouse_HMG_4	8	1	-	3.9724872877961266	3.831455989468986	TGAAAACCCGTTCA
chr22	50024801	50024802	chr22:50024802:T:C	rs137885	T	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr22	50028112	50028113	chr22:50028113:T:C	rs137890	T	C	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr22	50028113	50028114	chr22:50028114:G:A	rs137891	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr22	50075441	50075442	chr22:50075442:C:T	rs6010259	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr22	50118385	50118386	chr22:50118386:A:G	rs138227	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr22	50128204	50128205	chr22:50128205:G:C	rs4838842	G	C	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr22	50129177	50129178	chr22:50129178:G:T	rs13055150	G	T	T	Sox1.mouse_HMG_4	6	1	-	3.7786626433791914	4.626841617895437	AGAATACACATGCA
chr22	50129178	50129179	chr22:50129179:T:C	rs13053657	T	C	C	Sox1.mouse_HMG_4	5	1	-	3.7786626433791914	3.3368834207738525	AGAATACACATGCA
chr22	50140073	50140074	chr22:50140074:A:G	rs2340602	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr22	50400431	50400432	chr22:50400432:G:T	rs74399782	G	T	g	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	105836	105837	chr3:105837:A:T	rs7429216	A	T	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	199188	199189	chr3:199189:A:G	rs1006032	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	243409	243410	chr3:243410:G:A	rs113790182	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.726929274166409	7.964842113351592	TGACTAACCATGCA
chr3	243429	243430	chr3:243430:T:C	rs76702559	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	452208	452209	chr3:452209:G:C	rs61259207	G	C	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr3	541579	541580	chr3:541580:G:T	rs187133276	G	T	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	635427	635428	chr3:635428:A:G	rs7647780	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	1093029	1093030	chr3:1093030:C:G	rs141131355	C	G	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	1771729	1771730	chr3:1771730:A:T	rs73111409	A	T	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr3	1868042	1868043	chr3:1868043:G:A	rs9653977	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	1902908	1902909	chr3:1902909:G:A	rs34947720	G	A	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr3	1972085	1972086	chr3:1972086:C:G	rs1387083	C	G	G	Sox1.mouse_HMG_4	10	1	-	10.011319633128867	6.5003713875075935	TGAATTCATAGTCA
chr3	1972108	1972109	chr3:1972109:C:T	rs9839919	C	T	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	2447204	2447205	chr3:2447205:C:G	rs34966409	C	G	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr3	2623646	2623647	chr3:2623647:C:T	rs9824557	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr3	2879719	2879720	chr3:2879720:A:G	rs7641289	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	3069751	3069752	chr3:3069752:C:T	rs17659353	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	3069773	3069774	chr3:3069774:G:A	rs340833	G	A	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	3122603	3122604	chr3:3122604:A:T	rs9866247	A	T	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	3208261	3208262	chr3:3208262:G:T	rs62230179	G	T	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr3	3429726	3429727	chr3:3429727:C:T	rs13063998	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	3739576	3739577	chr3:3739577:A:C	rs6794628	A	C	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	3739594	3739595	chr3:3739595:A:G	rs6794633	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr3	3837198	3837199	chr3:3837199:T:G	rs13083087	T	G	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	3927604	3927605	chr3:3927605:T:C	rs1485204	T	C	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	4340796	4340797	chr3:4340797:G:A	rs114280754	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr3	4595528	4595529	chr3:4595529:G:A	rs9861380	G	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	4744835	4744836	chr3:4744836:G:A	rs147388187	G	A	G	Sox1.mouse_HMG_4	8	1	-	6.634748285005615	6.493716986678476	TGAATTCCCATTTA
chr3	4898394	4898395	chr3:4898395:T:A	chr3:4898395:T:A	T	A	T	Sox1.mouse_HMG_4	13	1	-	6.465459874983387	-0.4172852409945822	GGAACTCCAATTCA
chr3	4953581	4953582	chr3:4953582:G:A	rs3846154	G	A	G	Sox1.mouse_HMG_4	0	1	-	4.098978951831273	8.000528699005871	CGTATGGTCATTCA
chr3	4974313	4974314	chr3:4974314:A:G	rs4108194	A	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	4977355	4977356	chr3:4977356:G:T	rs549603220	G	T	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	4977366	4977367	chr3:4977367:T:C	rs573198008	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	5071501	5071502	chr3:5071502:T:C	rs35489229	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr3	5122008	5122009	chr3:5122009:A:G	rs1054434908	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	5298413	5298414	chr3:5298414:A:G	rs145216803	A	G	A	Sox1.mouse_HMG_4	7	1	+	7.657826315161359	6.706399327199532	TGAATATATATACA
chr3	5298419	5298420	chr3:5298420:A:G	rs62254349	A	G	A	Sox1.mouse_HMG_4	13	1	+	7.657826315161359	0.7750811991833899	TGAATATATATACA
chr3	5298432	5298433	chr3:5298433:C:T	rs62254350	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr3	5315846	5315847	chr3:5315847:C:A	rs398708	C	A	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr3	5330668	5330669	chr3:5330669:C:A	rs57789524	C	A	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	5426629	5426630	chr3:5426630:G:C	rs74974031	G	C	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	5426654	5426655	chr3:5426655:C:T	rs78188093	C	T	C	Sox1.mouse_HMG_4	7	1	-	9.339189576240218	10.290616564202045	TGAATGAGAATGCA
chr3	5426658	5426659	chr3:5426659:T:C	rs143468306	T	C	T	Sox1.mouse_HMG_4	3	1	-	9.339189576240218	2.45176966643602	TGAATGAGAATGCA
chr3	5495194	5495195	chr3:5495195:C:G	rs78505282	C	G	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr3	5645016	5645017	chr3:5645017:C:A	rs9863364	C	A	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	5658976	5658977	chr3:5658977:G:T	rs2123372	G	T	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	5923855	5923856	chr3:5923856:T:G	rs7616661	T	G	T	Sox1.mouse_HMG_4	10	1	+	8.00165738656333	4.6368364990603235	GGAATAGCCATGCA
chr3	6040334	6040335	chr3:6040335:A:G	rs58398768	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr3	6737387	6737388	chr3:6737388:A:G	rs10461045	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	6737422	6737423	chr3:6737423:C:T	rs114562088	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	7088715	7088716	chr3:7088716:T:C	rs12497073	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	7519848	7519849	chr3:7519849:T:G	rs747939	T	G	T	Sox1.mouse_HMG_4	0	1	+	4.53771912611853	0.9403807533469195	TGAAGCTTCATTCA
chr3	7897174	7897175	chr3:7897175:T:C	rs6805549	T	C	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	8280137	8280138	chr3:8280138:A:C	rs55867032	A	C	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	8357565	8357566	chr3:8357566:G:A	rs78547102	G	A	g	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr3	8370883	8370884	chr3:8370884:G:A	rs358985	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	8599494	8599495	chr3:8599495:A:G	rs1689810	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr3	8657333	8657334	chr3:8657334:G:A	rs55688504	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	8660405	8660406	chr3:8660406:A:C	rs147443498	A	C	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	8737701	8737702	chr3:8737702:A:T	rs112351244	A	T	A	Sox1.mouse_HMG_4	0	1	-	11.413374809590199	4.54913264293981	TGAACAGGCATTCA
chr3	8737711	8737712	chr3:8737712:A:C	rs237871	A	C	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr3	8799954	8799955	chr3:8799955:G:T	rs237837	G	T	T	Sox1.mouse_HMG_4	8	1	-	7.7918526178718714	7.033164620133429	TGAGTATACATTCA
chr3	8828060	8828061	chr3:8828061:T:C	rs62243421	T	C	t	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	8989492	8989493	chr3:8989493:T:C	rs2648332	T	C	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr3	8989497	8989498	chr3:8989498:T:C	rs146979870	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	9019848	9019849	chr3:9019849:C:T	rs925194	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr3	9050759	9050760	chr3:9050760:C:T	rs2036992	C	T	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	9248403	9248404	chr3:9248404:C:G	rs117893853	C	G	C	Sox1.mouse_HMG_4	11	1	-	6.405679343781097	3.0394185319998384	GGAATTCACATGCA
chr3	10270428	10270429	chr3:10270429:T:C	rs61730105	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.796374465603252	-2.0863706503747173	GGAATAATCACTCA
chr3	10434995	10434996	chr3:10434996:T:C	rs475185	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	10788814	10788815	chr3:10788815:T:G	rs2596840	T	G	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	10846716	10846717	chr3:10846717:A:G	rs3774121	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.677839965640788	-2.204905150337181	TGAACACTTATCCA
chr3	11239300	11239301	chr3:11239301:C:G	rs144679233	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	11556526	11556527	chr3:11556527:C:T	rs60599857	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	11613729	11613730	chr3:11613730:T:C	rs17833547	T	C	T	Sox1.mouse_HMG_4	9	1	-	6.8726611241908	3.5078402366877928	TGAATTCTCATTGA
chr3	11721526	11721527	chr3:11721527:T:C	rs11128570	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	11759574	11759575	chr3:11759575:A:T	rs149316583	A	T	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr3	11919375	11919376	chr3:11919376:G:C	rs7614924	G	C	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr3	11952842	11952843	chr3:11952843:C:T	rs533133655	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	11998940	11998941	chr3:11998941:T:A	rs2600231	T	A	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr3	12229880	12229881	chr3:12229881:C:T	rs56268840	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	12299181	12299182	chr3:12299182:A:C	rs34295844	A	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	12553814	12553815	chr3:12553815:T:C	rs77538836	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	12695030	12695031	chr3:12695031:C:G	rs9818046	C	G	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr3	12892192	12892193	chr3:12892193:C:T	rs138191299	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	13285141	13285142	chr3:13285142:C:G	rs77901643	C	G	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr3	13428137	13428138	chr3:13428138:G:A	rs6762212	G	A	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	13580031	13580032	chr3:13580032:T:C	rs4684147	T	C	C	Sox1.mouse_HMG_4	4	1	+	4.112733369227537	1.3907165504001382	TGAATGACCGTGCC
chr3	13580055	13580056	chr3:13580056:G:C	rs11925439	G	C	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr3	13715982	13715983	chr3:13715983:G:A	rs4684993	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr3	14304754	14304755	chr3:14304755:C:T	rs9812900	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr3	14372342	14372343	chr3:14372343:C:T	rs116012416	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	14380194	14380195	chr3:14380195:T:C	rs62231816	T	C	C	Sox1.mouse_HMG_4	3	1	-	5.197316660508483	-1.690103249295714	TGAACAACCATGCC
chr3	14629577	14629578	chr3:14629578:G:T	rs9681597	G	T	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	14888909	14888910	chr3:14888910:C:T	rs7648497	C	T	c	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	15055316	15055317	chr3:15055317:A:C	rs28778661	A	C	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr3	15064034	15064035	chr3:15064035:C:T	rs58508545	C	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	15121691	15121692	chr3:15121692:A:G	rs6442501	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	15634918	15634919	chr3:15634919:G:A	rs6773682	G	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	15965347	15965348	chr3:15965348:A:T	rs62233058	A	T	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr3	16122349	16122350	chr3:16122350:A:C	rs9826080	A	C	A	Sox1.mouse_HMG_4	0	1	-	5.374466288809518	1.7771279160379085	TGGACAAACATTCA
chr3	16122350	16122351	chr3:16122351:G:A	rs574628179	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	16128120	16128121	chr3:16128121:A:C	rs17041907	A	C	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	16711766	16711767	chr3:16711767:G:A	rs2122257	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	16764921	16764922	chr3:16764922:G:A	rs4685387	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	16962036	16962037	chr3:16962037:A:G	rs6796868	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr3	17585679	17585680	chr3:17585680:T:A	rs187152397	T	A	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	18127310	18127311	chr3:18127311:C:A	rs7627406	C	A	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr3	18355031	18355032	chr3:18355032:G:A	rs111299577	G	A	G	Sox1.mouse_HMG_4	0	1	-	6.178871377367983	10.080421124542584	CGACTTATAATTCA
chr3	19220544	19220545	chr3:19220545:C:T	rs80256379	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.575221014484316	0.6664662351690958	TGAAGACTCATTCA
chr3	19739387	19739388	chr3:19739388:T:C	rs62279377	T	C	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	20577065	20577066	chr3:20577066:A:T	rs75099809	A	T	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	21067036	21067037	chr3:21067037:A:T	rs2886760	A	T	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	21274236	21274237	chr3:21274237:A:T	rs9824460	A	T	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr3	21393974	21393975	chr3:21393975:G:A	rs17008560	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr3	21632616	21632617	chr3:21632617:C:A	rs1824215	C	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr3	21705025	21705026	chr3:21705026:C:T	rs1013692831	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr3	21747872	21747873	chr3:21747873:G:A	rs78626711	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	21945355	21945356	chr3:21945356:G:C	rs9310668	G	C	G	Sox1.mouse_HMG_4	11	1	+	10.987583287211422	7.621322475430165	TGAATGTTCATGCA
chr3	22264296	22264297	chr3:22264297:C:T	rs2638159	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr3	22835139	22835140	chr3:22835140:T:C	rs294787	T	C	T	Sox1.mouse_HMG_4	10	1	+	5.971369080311465	-0.9044000528128153	CGAATGAGTATTCC
chr3	22883176	22883177	chr3:22883177:G:A	rs11707199	G	A	G	Sox1.mouse_HMG_4	0	1	+	7.313638849499632	4.04673505562085	GGAACTACAATTCA
chr3	22904345	22904346	chr3:22904346:C:T	rs612435	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	23877772	23877773	chr3:23877773:G:T	rs116765467	G	T	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr3	23950398	23950399	chr3:23950399:A:G	rs116020214	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr3	23992220	23992221	chr3:23992221:A:G	chr3:23992221:A:G	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	25420253	25420254	chr3:25420254:A:G	rs76447789	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr3	25845954	25845955	chr3:25845955:C:T	rs75284691	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr3	25885702	25885703	chr3:25885703:A:G	rs528724953	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	25885733	25885734	chr3:25885734:G:A	rs188700149	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	26171212	26171213	chr3:26171213:G:A	rs7627202	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	26587674	26587675	chr3:26587675:C:G	rs79730752	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	26791465	26791466	chr3:26791466:T:C	rs1586504	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	27553002	27553003	chr3:27553003:C:T	rs556226318	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	27670095	27670096	chr3:27670096:A:G	rs7641509	A	G	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	27971983	27971984	chr3:27971984:C:A	rs71325223	C	A	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr3	28008245	28008246	chr3:28008246:T:C	rs9857133	T	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	28057781	28057782	chr3:28057782:C:T	rs13072405	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr3	28076349	28076350	chr3:28076350:G:T	rs4680896	G	T	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	28082717	28082718	chr3:28082718:G:A	rs17688561	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	28308315	28308316	chr3:28308316:C:A	rs113019737	C	A	c	Sox1.mouse_HMG_4	4	1	+	4.548163747567682	0.4240985838965001	TGAACGGTAATACA
chr3	28916158	28916159	chr3:28916159:A:G	rs140552289	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr3	29164941	29164942	chr3:29164942:A:T	rs6768828	A	T	A	Sox1.mouse_HMG_4	13	1	+	7.243818262196094	0.3610731462181249	TGAATGTCTAGGCA
chr3	29347710	29347711	chr3:29347711:T:G	rs77143624	T	G	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	29406459	29406460	chr3:29406460:A:G	rs72852379	A	G	a	Sox1.mouse_HMG_4	7	1	-	7.802420828134335	7.564507988949152	TGGATTGTCATTCA
chr3	29406589	29406590	chr3:29406590:C:A	rs72852380	C	A	c	Sox1.mouse_HMG_4	5	1	-	6.95212692206086	6.754019051189322	TGAATGACAAGGCA
chr3	30271983	30271984	chr3:30271984:C:A	rs4955166	C	A	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr3	30273755	30273756	chr3:30273756:C:T	rs6768548	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr3	30334357	30334358	chr3:30334358:T:C	rs1386706924	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	30350486	30350487	chr3:30350487:A:G	rs1987301	A	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	30357565	30357566	chr3:30357566:C:G	rs7641505	C	G	G	Sox1.mouse_HMG_4	4	1	+	5.4890326644277465	1.3649675007565658	TGAACAGACACTCA
chr3	30408241	30408242	chr3:30408242:C:A	rs6781621	C	A	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr3	30408276	30408277	chr3:30408277:T:G	rs1381419414	T	G	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	30621061	30621062	chr3:30621062:A:G	rs9844092	A	G	A	Sox1.mouse_HMG_4	9	1	+	11.491083784545825	8.12626289704282	TGAATAAACATGCA
chr3	30632840	30632841	chr3:30632841:A:G	rs17025813	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	31405448	31405449	chr3:31405449:T:C	rs2888290	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr3	31863296	31863297	chr3:31863297:T:G	rs9862063	T	G	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	31881259	31881260	chr3:31881260:C:T	rs4346583	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr3	32019487	32019488	chr3:32019488:G:A	rs72855526	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr3	32278799	32278800	chr3:32278800:T:C	rs7611893	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	32399126	32399127	chr3:32399127:A:C	rs143705350	A	C	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	32655858	32655859	chr3:32655859:C:G	rs11129526	C	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr3	32796100	32796101	chr3:32796101:C:T	rs73044103	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	32876015	32876016	chr3:32876016:T:C	rs9846737	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr3	32995272	32995273	chr3:32995273:C:T	rs76630871	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr3	33598825	33598826	chr3:33598826:T:C	rs79819185	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.999964421974607	1.1241952888503255	AGAATAAATATTCA
chr3	33749844	33749845	chr3:33749845:T:C	rs9813676	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.642481597196545	0.7667124640722636	TGAAATATTATTCA
chr3	33749852	33749853	chr3:33749853:T:C	rs34973395	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	33912273	33912274	chr3:33912274:G:T	rs112723455	G	T	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	34066338	34066339	chr3:34066339:C:G	rs34288141	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	34687731	34687732	chr3:34687732:G:A	rs79019492	G	A	g	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr3	34943221	34943222	chr3:34943222:C:T	rs7618930	C	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	34973965	34973966	chr3:34973966:G:C	rs9853345	G	C	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr3	35549917	35549918	chr3:35549918:G:A	rs192994502	G	A	g	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	35649658	35649659	chr3:35649659:G:A	rs12496573	G	A	G	Sox1.mouse_HMG_4	11	1	+	5.776260817865674	2.410000006084415	TGAATTAGAAGGCA
chr3	35664884	35664885	chr3:35664885:C:A	rs9827063	C	A	C	Sox1.mouse_HMG_4	12	1	+	3.886067806309126	-3.0226869730060946	TGATCTGGCATTCA
chr3	35664905	35664906	chr3:35664906:T:G	rs28642108	T	G	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	35670953	35670954	chr3:35670954:A:G	rs2280097	A	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	36455595	36455596	chr3:36455596:A:T	rs75223282	A	T	A	Sox1.mouse_HMG_4	7	1	-	7.190039761246043	6.925795676699039	TGAATGATAGTGCA
chr3	36461021	36461022	chr3:36461022:G:A	rs55766331	G	A	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr3	36960139	36960140	chr3:36960140:T:C	rs60727042	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	36960178	36960179	chr3:36960179:A:G	chr3:36960179:A:G	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	37073134	37073135	chr3:37073135:G:A	rs73824621	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	37206248	37206249	chr3:37206249:T:A	rs185747667	T	A	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	37474644	37474645	chr3:37474645:A:G	rs267526	A	G	A	Sox1.mouse_HMG_4	9	1	+	5.285775899181452	1.9209550116784433	TGAACAACTATTCT
chr3	37527038	37527039	chr3:37527039:C:T	rs166507	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr3	37934956	37934957	chr3:37934957:C:G	rs111928928	C	G	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	38039946	38039947	chr3:38039947:C:T	rs13059214	C	T	C	Sox1.mouse_HMG_4	1	1	-	8.57118264238781	1.662427863072591	GGAACAACTATTCA
chr3	38169190	38169191	chr3:38169191:G:A	rs79724028	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	39438389	39438390	chr3:39438390:T:G	rs12495623	T	G	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	39665934	39665935	chr3:39665935:T:C	rs76968955	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	39910291	39910292	chr3:39910292:G:A	rs7624497	G	A	a	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	39910294	39910295	chr3:39910295:G:A	rs7624501	G	A	g	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	40175895	40175896	chr3:40175896:C:G	rs11719904	C	G	C	Sox1.mouse_HMG_4	6	1	+	4.304319462592742	5.234079166536278	GGAACCCCCATTCA
chr3	40309250	40309251	chr3:40309251:T:G	rs78516143	T	G	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr3	40418587	40418588	chr3:40418588:C:T	rs150050512	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	40741527	40741528	chr3:40741528:C:T	rs6804685	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	41201138	41201139	chr3:41201139:C:A	rs4974075	C	A	C	Sox1.mouse_HMG_4	4	1	+	11.841441845519398	7.717376681848218	TGAACGAACATTCA
chr3	41296070	41296071	chr3:41296071:T:C	rs9818289	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr3	41330598	41330599	chr3:41330599:C:T	rs9820239	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr3	41363873	41363874	chr3:41363874:G:T	rs17030371	G	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr3	41651555	41651556	chr3:41651556:A:G	rs4973981	A	G	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr3	41763088	41763089	chr3:41763089:C:G	rs9311288	C	G	G	Sox1.mouse_HMG_4	0	1	+	9.73144429392404	10.03565566832703	CGAATTACAATTCA
chr3	42222929	42222930	chr3:42222930:T:C	rs3733054	T	C	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr3	42727065	42727066	chr3:42727066:A:C	rs3912102	A	C	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	42936068	42936069	chr3:42936069:T:G	rs865842	T	G	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	43012083	43012084	chr3:43012084:G:A	rs9863179	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	43093205	43093206	chr3:43093206:C:T	rs1369810615	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	43145868	43145869	chr3:43145869:A:T	rs12487599	A	T	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	43179356	43179357	chr3:43179357:C:T	rs3843370	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	43327180	43327181	chr3:43327181:G:T	rs17406718	G	T	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	43536683	43536684	chr3:43536684:T:C	rs79082684	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr3	43728164	43728165	chr3:43728165:G:A	rs17075943	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	43728168	43728169	chr3:43728169:C:A	rs113418384	C	A	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr3	43791684	43791685	chr3:43791685:C:T	rs11130013	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	43858250	43858251	chr3:43858251:C:T	rs9989976	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr3	44003874	44003875	chr3:44003875:A:G	rs6806281	A	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	44962308	44962309	chr3:44962309:A:C	rs6764811	A	C	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr3	45124923	45124924	chr3:45124924:C:T	rs34703630	C	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	45576816	45576817	chr3:45576817:G:A	rs267241	G	A	g	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr3	45701311	45701312	chr3:45701312:C:G	rs71325084	C	G	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	45942485	45942486	chr3:45942486:G:A	rs56354570	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr3	46558493	46558494	chr3:46558494:A:G	rs2280411	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr3	46587744	46587745	chr3:46587745:A:G	rs116756995	A	G	A	Sox1.mouse_HMG_4	7	1	-	6.764615472054598	6.526702632869415	TGAATTCTTTTTCA
chr3	46617531	46617532	chr3:46617532:G:T	rs113061184	G	T	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr3	46811188	46811189	chr3:46811189:A:G	rs7647507	A	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	47528505	47528506	chr3:47528506:C:T	rs140542620	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	47782558	47782559	chr3:47782559:A:G	rs773675502	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	48260123	48260124	chr3:48260124:A:C	rs13068265	A	C	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	48926865	48926866	chr3:48926866:C:A	rs114001974	C	A	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	48926865	48926866	chr3:48926866:C:T	chr3:48926866:C:T	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	48926866	48926867	chr3:48926867:C:T	rs146551880	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr3	49720960	49720961	chr3:49720961:C:T	rs2291544	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	52277384	52277385	chr3:52277385:T:C	rs116592730	T	C	T	Sox1.mouse_HMG_4	9	1	-	5.9020699506044245	2.5372490631014184	TGAATTCCAATTCT
chr3	52544457	52544458	chr3:52544458:A:G	rs7643568	A	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	52682108	52682109	chr3:52682109:A:G	rs9836894	A	G	A	Sox1.mouse_HMG_4	4	1	-	7.484772262627936	4.762755443800536	GGAATTGACAGTCA
chr3	52894316	52894317	chr3:52894317:G:A	rs62253582	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	52894317	52894318	chr3:52894318:G:A	rs62253583	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	53254458	53254459	chr3:53254459:G:A	rs13059189	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	53677808	53677809	chr3:53677809:A:G	rs11711045	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr3	53704432	53704433	chr3:53704433:T:C	rs3821857	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	53739581	53739582	chr3:53739582:A:G	rs2680651	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr3	54133408	54133409	chr3:54133409:A:G	rs721763	A	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	54573864	54573865	chr3:54573865:C:T	rs1011563	C	T	T	Sox1.mouse_HMG_4	12	1	+	6.757639489200912	-0.15111529011430846	TGAATTCTTATTCT
chr3	54731769	54731770	chr3:54731770:C:A	rs58295654	C	A	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr3	55194184	55194185	chr3:55194185:T:G	rs11130464	T	G	T	Sox1.mouse_HMG_4	0	1	+	4.96678652275907	1.369448149987462	TGAACATCTTTTCA
chr3	55296161	55296162	chr3:55296162:C:T	rs1827522	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	55296172	55296173	chr3:55296173:A:G	rs145168931	A	G	A	Sox1.mouse_HMG_4	5	1	+	10.907148894576586	10.465369671971247	TGAATACTCATGCA
chr3	55306244	55306245	chr3:55306245:C:T	rs73849547	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	55334352	55334353	chr3:55334353:T:C	rs12490931	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	55446694	55446695	chr3:55446695:T:C	rs544704	T	C	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr3	55451509	55451510	chr3:55451510:T:C	rs549679750	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	55629709	55629710	chr3:55629710:T:C	rs533330500	T	C	T	Sox1.mouse_HMG_4	5	1	-	4.978313489232961	4.536534266627623	AGAACATCTATTCA
chr3	55648985	55648986	chr3:55648986:G:A	rs815469	G	A	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	55704835	55704836	chr3:55704836:A:G	rs815438	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	56229227	56229228	chr3:56229228:T:C	rs1452211	T	C	C	Sox1.mouse_HMG_4	3	1	-	7.133604080155352	0.24618417035115558	TGAATACCTATTAA
chr3	56254581	56254582	chr3:56254582:A:G	rs2123178	A	G	A	Sox1.mouse_HMG_4	7	1	-	7.807696460657345	7.569783621472162	TGAATGATTGTGCA
chr3	56612182	56612183	chr3:56612183:T:C	rs59238106	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.212189313113083	2.3106395659384837	TGAATTTGCTTTCA
chr3	56778205	56778206	chr3:56778206:A:T	rs62252679	A	T	A	Sox1.mouse_HMG_4	10	1	-	7.7527141134470785	0.8769449803227969	GGAATAAATATGCA
chr3	56978209	56978210	chr3:56978210:T:C	rs7638884	T	C	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	57046684	57046685	chr3:57046685:C:T	rs4399856	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr3	57350391	57350392	chr3:57350392:T:A	rs6771841	T	A	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	58422951	58422952	chr3:58422952:G:A	rs11721168	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr3	58508818	58508819	chr3:58508819:G:C	rs11716125	G	C	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	58628692	58628693	chr3:58628693:G:A	rs753821	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr3	58661984	58661985	chr3:58661985:C:T	rs544804253	C	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	59539681	59539682	chr3:59539682:T:C	rs11709685	T	C	C	Sox1.mouse_HMG_4	6	1	+	7.641007833383836	7.118794218143658	TGAACATGCAGTCA
chr3	59539691	59539692	chr3:59539692:G:A	rs78498020	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	59588491	59588492	chr3:59588492:T:G	rs12496131	T	G	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	59607767	59607768	chr3:59607768:G:A	rs13325549	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr3	59644993	59644994	chr3:59644994:C:T	rs115822630	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr3	59692886	59692887	chr3:59692887:A:G	rs2121795	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	59754692	59754693	chr3:59754693:A:G	rs1683354	A	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr3	59780413	59780414	chr3:59780414:T:A	rs73840810	T	A	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	59934887	59934888	chr3:59934888:G:C	rs74745679	G	C	G	Sox1.mouse_HMG_4	0	1	+	7.313638849499632	7.009427475096641	GGAACTACAATTCA
chr3	59987432	59987433	chr3:59987433:G:C	rs3772496	G	C	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	60081511	60081512	chr3:60081512:T:A	rs2736783	T	A	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	60081527	60081528	chr3:60081528:T:C	rs76379487	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr3	60081557	60081558	chr3:60081558:A:G	rs2736784	A	G	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	60104389	60104390	chr3:60104390:T:C	rs12330253	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	60270078	60270079	chr3:60270079:G:A	rs7636213	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	60330460	60330461	chr3:60330461:G:A	rs143508157	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	60367241	60367242	chr3:60367242:A:C	rs6768883	A	C	A	Sox1.mouse_HMG_4	6	1	-	7.384849560523233	7.7923956492265924	TGAATGTCCAGGCA
chr3	60543230	60543231	chr3:60543231:T:A	rs2121856	T	A	A	Sox1.mouse_HMG_4	4	1	+	8.12626289704282	1.2801809145442398	TGAATAAACAGGCA
chr3	60954362	60954363	chr3:60954363:C:T	rs56037623	C	T	C	Sox1.mouse_HMG_4	3	1	+	8.492735312383498	5.39580115832054	TGACCAAACATTCA
chr3	61630624	61630625	chr3:61630625:A:T	rs116943210	A	T	A	Sox1.mouse_HMG_4	13	1	+	4.837494794270954	-2.045250321707015	TGAGCTGACATTCA
chr3	61950130	61950131	chr3:61950131:T:C	rs6769017	T	C	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr3	62045043	62045044	chr3:62045044:G:T	rs12489693	G	T	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	62724172	62724173	chr3:62724173:G:C	rs576222	G	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr3	62791308	62791309	chr3:62791309:T:C	rs304213	T	C	t	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	62989148	62989149	chr3:62989149:G:T	rs7611901	G	T	G	Sox1.mouse_HMG_4	8	1	-	7.865093624950975	7.106405627212532	TGAAGTGTCATTCA
chr3	63093824	63093825	chr3:63093825:A:G	rs4688374	A	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	63977001	63977002	chr3:63977002:C:G	rs6445387	C	G	G	Sox1.mouse_HMG_4	1	1	-	6.36186517571477	-0.5468896036004509	TGACTTCACAGTCA
chr3	64158468	64158469	chr3:64158469:A:G	rs11711394	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	64248574	64248575	chr3:64248575:T:A	rs221989	T	A	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr3	64333976	64333977	chr3:64333977:G:A	rs114758464	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	64405183	64405184	chr3:64405184:G:A	rs1443519	G	A	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr3	64428102	64428103	chr3:64428103:C:G	rs4688456	C	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	64900108	64900109	chr3:64900109:A:G	rs79584294	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr3	64967606	64967607	chr3:64967607:C:G	rs59239871	C	G	C	Sox1.mouse_HMG_4	4	1	+	5.1087438744345866	0.9846787107634054	TGAACTGTCATCCA
chr3	65127465	65127466	chr3:65127466:C:G	rs960118	C	G	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr3	65225831	65225832	chr3:65225832:G:A	rs9876946	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	65286209	65286210	chr3:65286210:C:T	rs17072704	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr3	65585024	65585025	chr3:65585025:C:G	rs7653877	C	G	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr3	65596365	65596366	chr3:65596366:C:T	rs13326145	C	T	C	Sox1.mouse_HMG_4	6	1	+	14.421302996982895	14.943516612223075	TGAATACTCATTCA
chr3	65740127	65740128	chr3:65740128:C:T	rs2047533	C	T	c	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr3	65776689	65776690	chr3:65776690:T:C	rs115592761	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	65990227	65990228	chr3:65990228:C:G	rs72910912	C	G	C	Sox1.mouse_HMG_4	6	1	+	6.671646114890167	7.601405818833702	TGAACTCAAGTTCA
chr3	66140295	66140296	chr3:66140296:A:C	rs944931471	A	C	a	Sox1.mouse_HMG_4	11	1	-	6.961638989092517	3.4474848866862073	GGAATACACATTCC
chr3	66243263	66243264	chr3:66243264:A:G	rs3772197	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	66270676	66270677	chr3:66270677:G:T	rs116314791	G	T	G	Sox1.mouse_HMG_4	12	1	-	7.772078576556948	0.8633237972417269	TGAACCAGCATTCA
chr3	66384692	66384693	chr3:66384693:T:A	rs57282808	T	A	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	66409134	66409135	chr3:66409135:C:T	rs13081784	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.638710373356522	8.360727192183921	TTAACAATCATTCA
chr3	66727235	66727236	chr3:66727236:A:C	rs7613047	A	C	c	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	66756751	66756752	chr3:66756752:T:C	rs114204556	T	C	T	Sox1.mouse_HMG_4	9	1	-	7.957699526301685	4.592878638798679	TGAATCACCATGCA
chr3	66756769	66756770	chr3:66756770:A:G	rs6796957	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr3	66796801	66796802	chr3:66796802:C:T	rs62258923	C	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	66996953	66996954	chr3:66996954:A:G	rs9828058	A	G	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	67976805	67976806	chr3:67976806:C:G	rs112492130	C	G	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	68083585	68083586	chr3:68083586:C:G	rs73834819	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr3	69097878	69097879	chr3:69097879:G:A	rs10212513	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	69412812	69412813	chr3:69412813:C:T	rs11920394	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	69533163	69533164	chr3:69533164:G:A	rs17006074	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.451379165975342	4.310347867648201	TGAACAAGCATCCA
chr3	69652220	69652221	chr3:69652221:A:G	rs1559942	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr3	69710352	69710353	chr3:69710353:A:G	rs66960570	A	G	A	Sox1.mouse_HMG_4	2	1	+	8.185487149815378	1.276732370500157	TGAAAAACCATTCA
chr3	69838426	69838427	chr3:69838427:A:G	rs2217456	A	G	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr3	72253765	72253766	chr3:72253766:A:G	rs4676868	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	72269548	72269549	chr3:72269549:A:T	rs4677130	A	T	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	72272763	72272764	chr3:72272764:G:A	rs9873880	G	A	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr3	72299609	72299610	chr3:72299610:C:G	rs78355094	C	G	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	72299621	72299622	chr3:72299622:G:T	rs114837030	G	T	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	72299641	72299642	chr3:72299642:T:C	chr3:72299642:T:C	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	72470101	72470102	chr3:72470102:G:C	rs9858898	G	C	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr3	72829947	72829948	chr3:72829948:G:A	rs17010204	G	A	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	72961584	72961585	chr3:72961585:C:T	rs140933984	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	73027132	73027133	chr3:73027133:G:A	rs9830079	G	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	73035135	73035136	chr3:73035136:A:G	rs6803336	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	73661555	73661556	chr3:73661556:A:G	rs4677325	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	73757735	73757736	chr3:73757736:C:T	rs3856584	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr3	73848552	73848553	chr3:73848553:T:C	rs991270	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	73956636	73956637	chr3:73956637:G:C	rs34530849	G	C	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr3	74067475	74067476	chr3:74067476:C:T	rs7653751	C	T	c	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	74188533	74188534	chr3:74188534:C:T	rs61091732	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr3	74273361	74273362	chr3:74273362:T:C	rs6783557	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	74904786	74904787	chr3:74904787:C:G	rs6765595	C	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	76122211	76122212	chr3:76122212:T:C	chr3:76122212:T:C	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	76122211	76122212	chr3:76122212:T:G	rs2675409	T	G	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	76122248	76122249	chr3:76122249:T:C	rs10212576	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr3	76276550	76276551	chr3:76276551:A:T	rs142373632	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	76644597	76644598	chr3:76644598:G:A	rs6764287	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	76726017	76726018	chr3:76726018:T:A	rs267122	T	A	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr3	77633804	77633805	chr3:77633805:A:G	rs55839809	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr3	78091781	78091782	chr3:78091782:A:G	rs7645598	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	78201320	78201321	chr3:78201321:T:G	rs11127616	T	G	G	Sox1.mouse_HMG_4	9	1	-	14.510793973760698	7.635024840636418	TGAATAATAATTCA
chr3	78565886	78565887	chr3:78565887:A:G	rs6801989	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr3	78917934	78917935	chr3:78917935:A:G	rs184063334	A	G	A	Sox1.mouse_HMG_4	13	1	+	6.467385741316655	-0.415359374661314	TGAATTCATATTAA
chr3	79490886	79490887	chr3:79490887:T:C	rs7616713	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr3	79552240	79552241	chr3:79552241:T:C	rs12629371	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr3	79775191	79775192	chr3:79775192:A:C	rs1827434	A	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	79840031	79840032	chr3:79840032:G:A	rs12487586	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	80669227	80669228	chr3:80669228:T:G	rs73131664	T	G	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	81155862	81155863	chr3:81155863:C:T	rs899062	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.7600020852615605	4.61897078693442	TGAATAAACGTCCA
chr3	81438202	81438203	chr3:81438203:A:G	rs35959610	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr3	81743440	81743441	chr3:81743441:T:C	rs3772889	T	C	C	Sox1.mouse_HMG_4	10	1	+	4.554627179420923	-2.321141953703358	TGAACACACATACA
chr3	81822479	81822480	chr3:81822480:A:T	rs28668209	A	T	A	Sox1.mouse_HMG_4	10	1	-	4.559272960484211	-2.3164961726400692	TGAACACACCTTCA
chr3	81874844	81874845	chr3:81874845:A:G	rs183057562	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	82001132	82001133	chr3:82001133:A:G	rs9875387	A	G	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr3	82203462	82203463	chr3:82203463:A:G	rs4398456	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr3	82449120	82449121	chr3:82449121:A:G	rs6548818	A	G	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	82640846	82640847	chr3:82640847:T:C	rs1840288	T	C	C	Sox1.mouse_HMG_4	9	1	-	11.153030856481834	7.788209968978827	TGACTATTCATTCA
chr3	82640853	82640854	chr3:82640854:T:G	rs1840289	T	G	G	Sox1.mouse_HMG_4	2	1	-	11.153030856481834	4.244276077166614	TGACTATTCATTCA
chr3	82928284	82928285	chr3:82928285:C:T	rs2873496	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr3	83347026	83347027	chr3:83347027:C:A	rs77974875	C	A	C	Sox1.mouse_HMG_4	8	1	+	7.384849560523233	6.626161562784792	TGAATGTCCAGGCA
chr3	83859980	83859981	chr3:83859981:T:C	rs4401373	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	84045666	84045667	chr3:84045667:T:C	rs4856241	T	C	T	Sox1.mouse_HMG_4	10	1	+	11.049304561940488	4.173535428816207	TGAATGAACATGCA
chr3	84260595	84260596	chr3:84260596:C:T	rs9882164	C	T	C	Sox1.mouse_HMG_4	8	1	+	11.049304561940488	10.908273263613346	TGAATGAACATGCA
chr3	84849241	84849242	chr3:84849242:T:C	rs1248849	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr3	85571804	85571805	chr3:85571805:C:G	rs17460638	C	G	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	86481489	86481490	chr3:86481490:A:C	rs9853248	A	C	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	86662143	86662144	chr3:86662144:G:A	rs1370213	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	86868033	86868034	chr3:86868034:C:T	rs147767336	C	T	C	Sox1.mouse_HMG_4	7	1	+	7.92007665713604	8.157989496321223	GGAATAACCATGCA
chr3	86987358	86987359	chr3:86987359:G:A	rs74891247	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	87122042	87122043	chr3:87122043:C:A	rs115718803	C	A	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	87126347	87126348	chr3:87126348:C:T	rs77171792	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr3	88151172	88151173	chr3:88151173:A:T	rs78405963	A	T	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	89474900	89474901	chr3:89474901:T:C	rs78677937	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	89474905	89474906	chr3:89474906:A:G	rs73139125	A	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	90025172	90025173	chr3:90025173:T:G	rs188007502	T	G	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	94647350	94647351	chr3:94647351:C:T	rs4857463	C	T	C	Sox1.mouse_HMG_4	8	1	+	6.8146374159029435	6.673606117575803	TGAATGGGCGTGCA
chr3	94787537	94787538	chr3:94787538:C:T	rs13324772	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr3	94787548	94787549	chr3:94787549:A:G	rs13314320	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr3	94949875	94949876	chr3:94949876:G:A	rs1432468	G	A	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	95244621	95244622	chr3:95244622:C:T	rs17383687	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	96007236	96007237	chr3:96007237:C:T	rs72920104	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr3	97267872	97267873	chr3:97267873:A:C	rs77380896	A	C	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	97967730	97967731	chr3:97967731:T:C	rs699304	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr3	97979035	97979036	chr3:97979036:T:A	rs1388645	T	A	T	Sox1.mouse_HMG_4	10	1	+	8.628035667391288	1.752266534267006	TGAACAAATATGCA
chr3	97983908	97983909	chr3:97983909:A:G	rs13316775	A	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	98587751	98587752	chr3:98587752:T:C	rs66531283	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	98726479	98726480	chr3:98726480:A:G	rs865474	A	G	G	Sox1.mouse_HMG_4	2	1	+	7.512548217667676	0.6037934383524555	TTAATACTCATTCA
chr3	98971669	98971670	chr3:98971670:C:T	rs145747463	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	99015902	99015903	chr3:99015903:T:A	rs2462226	T	A	A	Sox1.mouse_HMG_4	6	1	+	6.789118721121717	7.115084080397786	TGAATCTCAATTCC
chr3	99475348	99475349	chr3:99475349:T:C	rs1245768741	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	100181182	100181183	chr3:100181183:G:A	rs553389295	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	100274113	100274114	chr3:100274114:A:C	rs35141973	A	C	a	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr3	100403734	100403735	chr3:100403735:A:C	rs553681259	A	C	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	100665601	100665602	chr3:100665602:T:C	rs56232573	T	C	.	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	100793949	100793950	chr3:100793950:G:A	rs17217760	G	A	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	100802438	100802439	chr3:100802439:A:C	rs2317206	A	C	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	100837991	100837992	chr3:100837992:G:A	rs73135589	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.262359898262785	-2.6463948810524363	TGAAATGCCAGTCA
chr3	100901020	100901021	chr3:100901021:G:A	rs79373562	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	100929453	100929454	chr3:100929454:G:A	rs9827694	G	A	G	Sox1.mouse_HMG_4	1	1	+	6.586749755625502	-0.3220050236897183	TGAATTGGCATTTA
chr3	101140567	101140568	chr3:101140568:G:A	rs9854892	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	101230486	101230487	chr3:101230487:T:C	rs62280636	T	C	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	102093783	102093784	chr3:102093784:A:G	rs75645755	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	102510704	102510705	chr3:102510705:G:C	rs1151321	G	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr3	102790934	102790935	chr3:102790935:G:T	rs7613307	G	T	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr3	102977977	102977978	chr3:102977978:G:A	rs573766367	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr3	103786652	103786653	chr3:103786653:G:A	rs74886519	G	A	G	Sox1.mouse_HMG_4	12	1	-	7.687399193144447	0.7786444138292268	TGAATTGTTATTCT
chr3	103916988	103916989	chr3:103916989:A:T	rs13320034	A	T	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr3	103929229	103929230	chr3:103929230:C:T	rs72969839	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.080404009306935	7.802420828134335	TAAACTGTCATTCA
chr3	104575556	104575557	chr3:104575557:G:T	rs2961327	G	T	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	105042792	105042793	chr3:105042793:G:A	rs1566718	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	105096260	105096261	chr3:105096261:T:C	rs1503158	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.764615472054598	-0.11812964392337122	TGAATTCTTTTTCA
chr3	105119959	105119960	chr3:105119960:A:C	rs77177028	A	C	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	105188852	105188853	chr3:105188853:G:T	rs7626224	G	T	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	105519114	105519115	chr3:105519115:C:T	rs1017914	C	T	T	Sox1.mouse_HMG_4	8	1	+	8.178063837064206	8.037032538737066	TTAATAGACATTCA
chr3	105649198	105649199	chr3:105649199:G:C	rs6778477	G	C	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr3	105755690	105755691	chr3:105755691:C:T	rs1867190	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	105923415	105923416	chr3:105923416:C:T	rs56895091	C	T	T	Sox1.mouse_HMG_4	7	1	+	4.669729506471059	4.907642345656242	GGAAGAGCCATTCA
chr3	106046604	106046605	chr3:106046605:A:G	rs6763166	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr3	106088353	106088354	chr3:106088354:A:G	rs6768841	A	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	106088356	106088357	chr3:106088357:T:C	rs79581975	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	106724105	106724106	chr3:106724106:G:C	rs72931546	G	C	G	Sox1.mouse_HMG_4	12	1	-	10.273568507512215	3.364813728196994	GGAATTATAATTCA
chr3	106988586	106988587	chr3:106988587:G:A	rs1712560	G	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	107005412	107005413	chr3:107005413:C:A	rs11715868	C	A	C	Sox1.mouse_HMG_4	1	1	-	10.273568507512215	3.364813728196994	GGAATTATAATTCA
chr3	107009838	107009839	chr3:107009839:G:T	rs7639273	G	T	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	107421574	107421575	chr3:107421575:C:T	rs793549	C	T	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	107881591	107881592	chr3:107881592:T:C	rs6772533	T	C	C	Sox1.mouse_HMG_4	13	1	-	7.1249650554115105	0.24221993943354114	TGACTACTTAGTCA
chr3	107943103	107943104	chr3:107943104:T:C	rs4855614	T	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr3	108124894	108124895	chr3:108124895:C:G	rs9845984	C	G	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr3	108297063	108297064	chr3:108297064:C:G	rs9829105	C	G	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	108345010	108345011	chr3:108345011:A:G	rs936261	A	G	G	Sox1.mouse_HMG_4	4	1	-	6.496288716491589	3.774271897664188	TGAATAGGAATCCA
chr3	108590861	108590862	chr3:108590862:G:A	rs9816505	G	A	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr3	108748846	108748847	chr3:108748847:G:A	rs13095823	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.7144949626866115	4.573463664359471	TGACAAGTCATTCA
chr3	109297637	109297638	chr3:109297638:T:C	rs114381287	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr3	109687935	109687936	chr3:109687936:T:C	rs78317307	T	C	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	110101586	110101587	chr3:110101587:C:T	rs1464248	C	T	C	Sox1.mouse_HMG_4	6	1	+	7.512548217667676	8.034761832907853	TTAATACTCATTCA
chr3	110180912	110180913	chr3:110180913:C:G	rs77375030	C	G	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr3	110524981	110524982	chr3:110524982:T:C	rs35083997	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	110903971	110903972	chr3:110903972:C:T	rs74792381	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr3	110925948	110925949	chr3:110925949:G:A	rs73852325	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	110997353	110997354	chr3:110997354:G:A	rs73227074	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	111073977	111073978	chr3:111073978:A:C	chr3:111073978:A:C	A	C	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr3	111210243	111210244	chr3:111210244:A:G	rs57976070	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.726582531474536	1.3617616439715297	TGAAGAGACATGCA
chr3	111607383	111607384	chr3:111607384:C:G	rs148251553	C	G	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	111619488	111619489	chr3:111619489:A:G	rs6780729	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	111783965	111783966	chr3:111783966:T:C	rs4645114	T	C	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	111910657	111910658	chr3:111910658:G:A	rs60821969	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	111950604	111950605	chr3:111950605:A:T	rs9867058	A	T	A	Sox1.mouse_HMG_4	0	1	-	3.793466922267122	-3.0707752443832685	TGAATACCCAAGCA
chr3	112293421	112293422	chr3:112293422:C:G	rs59753552	C	G	C	Sox1.mouse_HMG_4	5	1	+	4.94582149325162	8.063757774252243	TGAACCGTAAGTCA
chr3	112595745	112595746	chr3:112595746:C:G	rs2705541	C	G	C	Sox1.mouse_HMG_4	1	1	-	6.505169026198211	-0.4035857531170082	TGAATTAGCATTAA
chr3	112643303	112643304	chr3:112643304:G:T	rs75460522	G	T	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr3	112643304	112643305	chr3:112643305:T:C	rs114888271	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr3	112643340	112643341	chr3:112643341:A:G	rs6772337	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	112643354	112643355	chr3:112643355:C:G	rs182081858	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	113228137	113228138	chr3:113228138:G:C	rs6798592	G	C	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	113915184	113915185	chr3:113915185:C:T	rs974701	C	T	c	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr3	113992305	113992306	chr3:113992306:C:T	rs62267061	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	114218487	114218488	chr3:114218488:G:A	rs9846423	G	A	G	Sox1.mouse_HMG_4	3	1	-	5.480175208434844	2.3832410543718856	TGACTTCCAATGCA
chr3	115611890	115611891	chr3:115611891:C:T	rs58015918	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	115616644	115616645	chr3:115616645:A:G	rs75499319	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.822346558088981	4.584433718903798	TGATTCATCATTCA
chr3	116314848	116314849	chr3:116314849:C:A	rs35966018	C	A	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	116663835	116663836	chr3:116663836:G:T	rs12635577	G	T	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	116689206	116689207	chr3:116689207:A:G	rs7634331	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	117084317	117084318	chr3:117084318:C:G	rs1521402	C	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr3	117216279	117216280	chr3:117216280:C:A	rs9817840	C	A	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	117252355	117252356	chr3:117252356:G:C	rs6775136	G	C	G	Sox1.mouse_HMG_4	1	1	+	4.670449401560549	-2.2383053777546733	TGAACAACAATACA
chr3	117703599	117703600	chr3:117703600:A:T	rs9834537	A	T	A	Sox1.mouse_HMG_4	5	1	+	6.786845866120173	6.146958772643296	TGAATACTATTTCA
chr3	117774680	117774681	chr3:117774681:C:T	rs9827255	C	T	T	Sox1.mouse_HMG_4	4	1	+	7.917394935671565	10.639411754498964	TGAACGTACATTCC
chr3	117894110	117894111	chr3:117894111:T:C	rs73168305	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	119253249	119253250	chr3:119253250:G:A	rs137954806	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	119292951	119292952	chr3:119292952:C:G	rs60682494	C	G	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	119356875	119356876	chr3:119356876:T:A	rs183204278	T	A	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr3	119418157	119418158	chr3:119418158:G:A	rs1025270108	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	119621089	119621090	chr3:119621090:T:C	rs3755583	T	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	119659167	119659168	chr3:119659168:C:T	rs13065893	C	T	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr3	119711617	119711618	chr3:119711618:T:C	rs73192043	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr3	119808035	119808036	chr3:119808036:G:A	rs55907307	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr3	120010808	120010809	chr3:120010809:T:C	rs6774693	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr3	121548936	121548937	chr3:121548937:C:A	rs552361236	C	A	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	121548948	121548949	chr3:121548949:A:G	rs531591867	A	G	a	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	121825393	121825394	chr3:121825394:T:C	rs79488379	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	122057944	122057945	chr3:122057945:G:T	rs35891398	G	T	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	122634513	122634514	chr3:122634514:A:C	rs11716890	A	C	A	Sox1.mouse_HMG_4	9	1	+	7.486149487438651	0.6103803543143702	TGAAATGCTATTCA
chr3	122826071	122826072	chr3:122826072:C:A	rs17213469	C	A	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr3	122855417	122855418	chr3:122855418:C:T	rs76598382	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	123713633	123713634	chr3:123713634:G:T	rs114110324	G	T	G	Sox1.mouse_HMG_4	7	1	-	6.834159856338361	6.8078286109765385	TGAATTGCAATACA
chr3	124513301	124513302	chr3:124513302:A:G	rs77213107	A	G	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	124513342	124513343	chr3:124513343:C:T	rs56002604	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr3	124707748	124707749	chr3:124707749:C:T	rs780043800	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	124860047	124860048	chr3:124860048:G:C	rs848798	G	C	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr3	124873095	124873096	chr3:124873096:T:A	rs541623516	T	A	T	Sox1.mouse_HMG_4	0	1	+	8.054581067159729	1.1903389005093372	TGAATCATTATGCA
chr3	124974454	124974455	chr3:124974455:G:T	rs4679198	G	T	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	124988017	124988018	chr3:124988018:A:C	rs61546496	A	C	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr3	125151866	125151867	chr3:125151867:T:G	rs76692837	T	G	T	Sox1.mouse_HMG_4	5	1	+	6.697908016421597	6.896015887293136	TGAATTAAAATTGA
chr3	125239682	125239683	chr3:125239683:G:T	rs9882766	G	T	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr3	125438110	125438111	chr3:125438111:C:T	rs558328809	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr3	125589693	125589694	chr3:125589694:A:T	rs13324039	A	T	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr3	125609978	125609979	chr3:125609979:T:G	rs9820898	T	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	125668839	125668840	chr3:125668840:A:G	rs6785079	A	G	G	Sox1.mouse_HMG_4	0	1	-	4.642655083309081	0.7411053361344813	TGAAGAGACATTCC
chr3	125862536	125862537	chr3:125862537:T:A	rs111706428	T	A	.	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	126404963	126404964	chr3:126404964:C:T	rs62264676	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr3	126417328	126417329	chr3:126417329:G:A	rs12490158	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	126533662	126533663	chr3:126533663:G:T	rs4679256	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	126715380	126715381	chr3:126715381:A:G	rs17693438	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.228506562295453	-2.6802482170197672	GGAACGGCAAGTCA
chr3	126969011	126969012	chr3:126969012:A:G	rs76927976	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.60866025059243	1.8866434317650282	TGAATAACCATGTA
chr3	127113543	127113544	chr3:127113544:A:T	rs4257496	A	T	c	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr3	127157966	127157967	chr3:127157967:T:C	rs2086682	T	C	T	Sox1.mouse_HMG_4	9	1	-	10.680454947166298	7.315634059663291	TGAACTCCTATTCA
chr3	127176994	127176995	chr3:127176995:G:A	rs922875	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	127176995	127176996	chr3:127176996:G:A	rs922874	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr3	127511784	127511785	chr3:127511785:G:A	rs1900674	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	127539021	127539022	chr3:127539022:A:G	rs7610274	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	127629838	127629839	chr3:127629839:C:A	rs72965766	C	A	.	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr3	127710029	127710030	chr3:127710030:T:A	rs7645411	T	A	T	Sox1.mouse_HMG_4	4	1	+	4.995906304680914	-1.8501756778176655	TGGATAATCAGTCA
chr3	128054521	128054522	chr3:128054522:C:T	rs192065080	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr3	128231760	128231761	chr3:128231761:G:T	rs73197340	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr3	128252765	128252766	chr3:128252766:C:T	rs2999069	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	128409191	128409192	chr3:128409192:C:T	rs79088936	C	T	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	128805189	128805190	chr3:128805190:A:G	rs62272618	A	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	129313336	129313337	chr3:129313337:A:C	rs141207712	A	C	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	129636199	129636200	chr3:129636200:G:T	rs2625994	G	T	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr3	130106927	130106928	chr3:130106928:A:C	rs12186030	A	C	a	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	130412131	130412132	chr3:130412132:C:G	rs13094766	C	G	C	Sox1.mouse_HMG_4	12	1	+	7.00000503605832	0.09125025674309906	GGAATCCACATTCA
chr3	130533565	130533566	chr3:130533566:T:C	rs9283579	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	130755903	130755904	chr3:130755904:T:G	rs17749625	T	G	T	Sox1.mouse_HMG_4	4	1	+	4.580911904232063	-2.265170078266517	TGAATACAGATGCA
chr3	131663782	131663783	chr3:131663783:T:C	rs11924321	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.865093624950975	0.9893244918266937	TGAAATGTCATTCA
chr3	131804612	131804613	chr3:131804613:G:A	rs35153614	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr3	131962023	131962024	chr3:131962024:T:C	rs9882252	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	132381270	132381271	chr3:132381271:A:G	rs72628548	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr3	132554091	132554092	chr3:132554092:T:G	rs113241138	T	G	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr3	133254920	133254921	chr3:133254921:C:T	rs62278973	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr3	133390624	133390625	chr3:133390625:G:A	rs3732572	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	133395245	133395246	chr3:133395246:C:T	rs76318466	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr3	133480635	133480636	chr3:133480636:T:C	rs55635040	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr3	133548357	133548358	chr3:133548358:A:T	rs6802296	A	T	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr3	133594810	133594811	chr3:133594811:C:T	rs111847596	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	133927180	133927181	chr3:133927181:C:T	rs78595783	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr3	133970967	133970968	chr3:133970968:G:C	rs12695600	G	C	C	Sox1.mouse_HMG_4	12	1	-	8.307322711224526	1.3985679319093058	GGAATAATCAGTCA
chr3	134060308	134060309	chr3:134060309:A:T	rs75138891	A	T	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr3	134131061	134131062	chr3:134131062:T:A	rs60202549	T	A	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr3	134252565	134252566	chr3:134252566:T:A	rs116320611	T	A	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	134326943	134326944	chr3:134326944:C:T	rs55682444	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	134326963	134326964	chr3:134326964:T:C	rs78592555	T	C	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr3	134406806	134406807	chr3:134406807:G:A	rs376837388	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	134406807	134406808	chr3:134406808:G:T	rs188091132	G	T	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr3	134556604	134556605	chr3:134556605:G:C	rs73221365	G	C	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	134743509	134743510	chr3:134743510:C:T	rs4955449	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	134826859	134826860	chr3:134826860:G:C	rs59148730	G	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr3	134917681	134917682	chr3:134917682:A:C	rs11709198	A	C	A	Sox1.mouse_HMG_4	0	1	-	4.504620030274979	0.9072816575033709	TGAACAGGCATTTA
chr3	134923824	134923825	chr3:134923825:T:C	rs11920780	T	C	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr3	135155418	135155419	chr3:135155419:G:A	rs574766701	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr3	135896763	135896764	chr3:135896764:G:C	rs7627556	G	C	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	136332976	136332977	chr3:136332977:C:T	rs528850170	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr3	136390271	136390272	chr3:136390272:A:G	rs9851986	A	G	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr3	136637755	136637756	chr3:136637756:C:T	rs9845950	C	T	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr3	137047253	137047254	chr3:137047254:A:G	rs1550507	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr3	138029675	138029676	chr3:138029676:T:C	rs41265447	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	138351317	138351318	chr3:138351318:G:C	rs78371063	G	C	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr3	138415484	138415485	chr3:138415485:T:C	rs9874855	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr3	138435080	138435081	chr3:138435081:G:A	rs191240658	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.478907124666782	7.001120739906959	TGAACTCGCGTTCA
chr3	138669732	138669733	chr3:138669733:T:A	rs361094	T	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	139380776	139380777	chr3:139380777:T:C	rs17395255	T	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr3	139987988	139987989	chr3:139987989:C:G	rs6769344	C	G	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr3	140053290	140053291	chr3:140053291:C:G	rs144780484	C	G	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	140206909	140206910	chr3:140206910:G:T	rs77579896	G	T	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr3	140458334	140458335	chr3:140458335:A:G	rs9868325	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr3	140716807	140716808	chr3:140716808:A:G	rs4683518	A	G	G	Sox1.mouse_HMG_4	9	1	+	4.845763233670751	1.4809423461677442	GGAACATACATGCA
chr3	141095367	141095368	chr3:141095368:T:A	rs563783534	T	A	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr3	141127835	141127836	chr3:141127836:A:T	rs116642299	A	T	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr3	141251047	141251048	chr3:141251048:G:A	rs75294700	G	A	G	Sox1.mouse_HMG_4	9	1	+	3.9995878281285178	7.364408715631525	TGAACGCCTGTGCA
chr3	141401748	141401749	chr3:141401749:T:C	rs73872713	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.404502565531476	3.502952818356875	TGAATACTTTTTCA
chr3	141447055	141447056	chr3:141447056:T:A	rs562730884	T	A	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	141483614	141483615	chr3:141483615:G:A	rs76583852	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr3	141486720	141486721	chr3:141486721:G:A	rs3806647	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.6968953808488365	4.555864082521695	TGAATAGACCTGCA
chr3	141486729	141486730	chr3:141486730:T:C	rs3806648	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	142140888	142140889	chr3:142140889:A:G	rs11719151	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr3	142147479	142147480	chr3:142147480:A:G	rs111345451	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	142273829	142273830	chr3:142273830:T:A	rs6791161	T	A	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	142395413	142395414	chr3:142395414:G:A	rs73238176	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	142588956	142588957	chr3:142588957:A:C	rs9879995	A	C	C	Sox1.mouse_HMG_4	9	1	+	4.68480781206091	-2.1909613210633703	TGACTAGTCAATCA
chr3	142992965	142992966	chr3:142992966:T:C	rs6770102	T	C	T	Sox1.mouse_HMG_4	7	1	-	7.05312517603398	6.101698188072152	TGAATACATAGTCC
chr3	143165426	143165427	chr3:143165427:C:G	rs73159647	C	G	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	143247087	143247088	chr3:143247088:A:G	rs9823783	A	G	G	Sox1.mouse_HMG_4	4	1	-	7.955451809309776	5.233434990482377	TGAATAAATATTGA
chr3	143327416	143327417	chr3:143327417:C:T	rs143433307	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	143601467	143601468	chr3:143601468:A:G	rs56156616	A	G	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	143963764	143963765	chr3:143963765:A:G	rs4446205	A	G	A	Sox1.mouse_HMG_4	2	1	+	10.885829853006934	3.977075073691715	TGAATTACTAGTCA
chr3	144273724	144273725	chr3:144273725:T:C	rs75058573	T	C	.	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr3	144761041	144761042	chr3:144761042:T:G	rs191066574	T	G	T	Sox1.mouse_HMG_4	2	1	-	8.944731425983552	2.035976646668333	TGAACAACCAGTCA
chr3	144772504	144772505	chr3:144772505:A:T	rs16855950	A	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	144843445	144843446	chr3:144843446:T:C	rs1914638	T	C	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	146300632	146300633	chr3:146300633:C:A	rs71300396	C	A	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	146374382	146374383	chr3:146374383:T:C	rs553185796	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	146466913	146466914	chr3:146466914:C:T	rs509382	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	146894127	146894128	chr3:146894128:T:C	rs12633225	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr3	147419886	147419887	chr3:147419887:A:G	rs73004648	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	147655256	147655257	chr3:147655257:G:A	rs148612552	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	147662002	147662003	chr3:147662003:G:A	rs2319332	G	A	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	147722022	147722023	chr3:147722023:T:G	rs111701808	T	G	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	148191686	148191687	chr3:148191687:C:T	rs67709324	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	148554547	148554548	chr3:148554548:C:T	rs2049276	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr3	148648738	148648739	chr3:148648739:A:T	rs1352896	A	T	A	Sox1.mouse_HMG_4	11	1	-	10.297794111741446	3.4173791975538776	TGAATACTAAGTCA
chr3	148966606	148966607	chr3:148966607:G:A	rs4401324	G	A	g	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	149489408	149489409	chr3:149489409:T:A	rs13095959	T	A	A	Sox1.mouse_HMG_4	4	1	+	6.318538176186135	-0.527543806312446	GGAATTTAAAGTCA
chr3	150062767	150062768	chr3:150062768:A:G	rs143642530	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr3	150120302	150120303	chr3:150120303:C:G	rs4681578	C	G	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	150350737	150350738	chr3:150350738:C:G	rs2122476	C	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	150826660	150826661	chr3:150826661:C:T	rs75323899	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr3	150928524	150928525	chr3:150928525:T:C	rs12107197	T	C	T	Sox1.mouse_HMG_4	8	1	+	7.453256480027915	7.594287778355054	TGAATTGCTAGGCA
chr3	151769419	151769420	chr3:151769420:A:G	rs142596942	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr3	151798518	151798519	chr3:151798519:C:T	rs11919916	C	T	-	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	151837042	151837043	chr3:151837043:T:C	rs539483195	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr3	152026238	152026239	chr3:152026239:G:A	rs74749863	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr3	152196718	152196719	chr3:152196719:A:G	rs76656975	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr3	152204924	152204925	chr3:152204925:G:A	rs1874056	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	152399164	152399165	chr3:152399165:G:A	rs16864251	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr3	152893675	152893676	chr3:152893676:A:G	rs7649494	A	G	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr3	153256414	153256415	chr3:153256415:G:C	rs77440569	G	C	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr3	153448340	153448341	chr3:153448341:G:A	rs6774349	G	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr3	153460190	153460191	chr3:153460191:C:G	rs7432115	C	G	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr3	153551131	153551132	chr3:153551132:C:G	rs7628831	C	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	153828578	153828579	chr3:153828579:A:G	rs4282023	A	G	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr3	153967255	153967256	chr3:153967256:G:A	rs1915579	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	154884926	154884927	chr3:154884927:T:G	rs1000984046	T	G	T	Sox1.mouse_HMG_4	0	1	+	9.4424375896858	5.845099216914191	TGAATGCAAATGCA
chr3	155008601	155008602	chr3:155008602:A:G	rs67772656	A	G	A	Sox1.mouse_HMG_4	0	1	-	7.8656499033807075	3.964100156206107	TGAACTGTAAGTCA
chr3	155020138	155020139	chr3:155020139:A:C	rs189784062	A	C	A	Sox1.mouse_HMG_4	10	1	-	7.926451519814529	4.561630632311523	TGAACAAAAATTCC
chr3	155555228	155555229	chr3:155555229:C:T	rs359552	C	T	C	Sox1.mouse_HMG_4	3	1	+	4.570241436442681	1.473307282379723	TGGCTAATCATTCA
chr3	156673748	156673749	chr3:156673749:T:C	rs1510269	T	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	156808123	156808124	chr3:156808124:G:A	rs75723442	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	157110732	157110733	chr3:157110733:G:C	rs150353646	G	C	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	157110733	157110734	chr3:157110734:G:A	chr3:157110734:G:A	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	157127231	157127232	chr3:157127232:A:T	rs76921829	A	T	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	157793113	157793114	chr3:157793114:T:A	rs9816230	T	A	T	Sox1.mouse_HMG_4	10	1	+	4.002594947753374	-2.8731741853709067	TGAGCGAGCATTCA
chr3	157793116	157793117	chr3:157793117:A:T	rs9833772	A	T	A	Sox1.mouse_HMG_4	13	1	+	4.002594947753374	-2.880150168224595	TGAGCGAGCATTCA
chr3	157930240	157930241	chr3:157930241:A:G	rs11712397	A	G	A	Sox1.mouse_HMG_4	2	1	+	10.174089422757797	3.2653346434425767	TGAATTGAAATGCA
chr3	157931714	157931715	chr3:157931715:G:A	rs79812543	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	158099648	158099649	chr3:158099649:A:G	rs35588117	A	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr3	158486282	158486283	chr3:158486283:G:A	rs75183062	G	A	G	Sox1.mouse_HMG_4	8	1	-	5.40079753417134	5.259766235844201	TGAACAACCATTAA
chr3	158621746	158621747	chr3:158621747:T:C	rs62286609	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	158660007	158660008	chr3:158660008:C:G	rs4680453	C	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	158936017	158936018	chr3:158936018:T:C	rs78794583	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	159041222	159041223	chr3:159041223:G:T	rs7639579	G	T	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	159312555	159312556	chr3:159312556:C:A	rs2621314	C	A	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr3	159450301	159450302	chr3:159450302:G:A	rs6803496	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	159668683	159668684	chr3:159668684:G:C	rs78960554	G	C	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr3	159669849	159669850	chr3:159669850:G:T	chr3:159669850:G:T	G	T	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	159785549	159785550	chr3:159785550:G:A	rs9811600	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr3	159911044	159911045	chr3:159911045:T:C	rs17809713	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.212531960811466	3.4905151419840665	TGACTTCACATGCA
chr3	160428279	160428280	chr3:160428280:C:G	rs58776572	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr3	160428294	160428295	chr3:160428295:G:A	rs142995371	G	A	G	Sox1.mouse_HMG_4	1	1	+	6.901480585040107	-0.007274194275112444	GGAACGCTAATTCA
chr3	161385840	161385841	chr3:161385841:A:C	rs466626	A	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr3	161630082	161630083	chr3:161630083:G:A	rs1399904	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr3	161913592	161913593	chr3:161913593:G:A	rs181446872	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	161990460	161990461	chr3:161990461:G:A	rs9855315	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr3	162159488	162159489	chr3:162159489:T:C	rs9817336	T	C	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	162217633	162217634	chr3:162217634:G:A	rs13089373	G	A	G	Sox1.mouse_HMG_4	4	1	-	11.923022574946689	14.645039393774088	TGAACGGACATTCA
chr3	163492011	163492012	chr3:163492012:G:T	rs1585420	G	T	G	Sox1.mouse_HMG_4	8	1	-	4.606313531854264	3.847625534115819	TGAATAGCCATTTC
chr3	164063589	164063590	chr3:164063590:T:C	rs151083771	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr3	164407434	164407435	chr3:164407435:C:T	rs9290232	C	T	C	Sox1.mouse_HMG_4	0	1	+	7.448502739044088	11.350052486218686	CGAATAAATATGCA
chr3	164480377	164480378	chr3:164480378:T:C	rs298758	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	164694575	164694576	chr3:164694576:A:G	rs16847459	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	165256939	165256940	chr3:165256940:A:G	rs111693468	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	165837398	165837399	chr3:165837399:T:C	rs1258109210	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr3	166262932	166262933	chr3:166262933:T:C	rs4634069	T	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	166283055	166283056	chr3:166283056:G:A	rs73176673	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	166468129	166468130	chr3:166468130:T:C	rs2863395	T	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr3	166773412	166773413	chr3:166773413:A:C	rs4680635	A	C	A	Sox1.mouse_HMG_4	3	1	+	6.93533392100744	3.1448481652662004	TGAAGTCTCATTCA
chr3	166830383	166830384	chr3:166830384:A:G	rs9860488	A	G	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr3	166836552	166836553	chr3:166836553:A:C	rs7619923	A	C	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	166900875	166900876	chr3:166900876:G:T	rs7612913	G	T	G	Sox1.mouse_HMG_4	1	1	+	7.313638849499632	0.4048840701844114	GGAACTACAATTCA
chr3	167067699	167067700	chr3:167067700:C:A	rs781388347	C	A	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	167481892	167481893	chr3:167481893:T:C	rs11706682	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr3	167733441	167733442	chr3:167733442:C:T	rs6764020	C	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	168024709	168024710	chr3:168024710:G:A	rs868168908	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	168323058	168323059	chr3:168323059:G:T	rs71304676	G	T	g	Sox1.mouse_HMG_4	7	1	-	7.627180785765792	7.60084954040397	TGAAATGCCATTCA
chr3	168596463	168596464	chr3:168596464:A:G	rs9873462	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr3	168644281	168644282	chr3:168644282:C:T	rs78978338	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr3	169945673	169945674	chr3:169945674:G:A	rs17289480	G	A	g	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	170248604	170248605	chr3:170248605:C:T	rs78658876	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr3	170310811	170310812	chr3:170310812:A:C	rs4955720	A	C	C	Sox1.mouse_HMG_4	9	1	+	11.848127490295017	4.972358357170735	TGAACTGTTATTCA
chr3	170523422	170523423	chr3:170523423:C:T	rs2111825	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr3	170660474	170660475	chr3:170660475:C:T	rs61790242	C	T	C	Sox1.mouse_HMG_4	7	1	-	8.849605553964013	9.80103254192584	GGAATACGAATTCA
chr3	170745701	170745702	chr3:170745702:A:G	rs115773887	A	G	A	Sox1.mouse_HMG_4	5	1	+	5.341084879208105	4.899305656602766	TGAACATTCATCCA
chr3	170752870	170752871	chr3:170752871:A:G	rs540495	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	171175876	171175877	chr3:171175877:G:A	rs16855948	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	171197605	171197606	chr3:171197606:C:T	rs59322739	C	T	C	Sox1.mouse_HMG_4	8	1	+	11.488737065807664	11.347705767480521	TGAATAGACATTCC
chr3	171197613	171197614	chr3:171197614:C:T	rs61792400	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	171249028	171249029	chr3:171249029:C:T	rs61792442	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	171363352	171363353	chr3:171363353:A:T	rs2422225	A	T	A	Sox1.mouse_HMG_4	5	1	+	4.736383740080726	4.096496646603848	TGAACACTCAGTCC
chr3	171495048	171495049	chr3:171495049:A:G	rs183076516	A	G	A	Sox1.mouse_HMG_4	6	1	-	7.148322875501951	6.6261092602617735	TGACTTTTCAGTCA
chr3	171647834	171647835	chr3:171647835:T:A	rs75168122	T	A	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	171705175	171705176	chr3:171705176:T:C	rs7632491	T	C	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	171748410	171748411	chr3:171748411:G:A	rs55906275	G	A	A	Sox1.mouse_HMG_4	0	1	+	7.832024137045154	4.565120343166372	GGAATATTCATGCA
chr3	172126983	172126984	chr3:172126984:G:A	chr3:172126984:G:A	G	A	G	Sox1.mouse_HMG_4	0	1	+	5.415885844192541	2.1489820503137587	GGAATGTGAATGCA
chr3	172126996	172126997	chr3:172126997:A:T	rs4894810	A	T	A	Sox1.mouse_HMG_4	13	1	+	5.415885844192541	-1.4668592717854283	GGAATGTGAATGCA
chr3	172135165	172135166	chr3:172135166:A:G	rs35447345	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr3	172144239	172144240	chr3:172144240:C:T	rs113981921	C	T	C	Sox1.mouse_HMG_4	1	1	-	6.8939959937018225	-0.01475878561339905	TGAGTTCTCATTCA
chr3	172244142	172244143	chr3:172244143:C:G	rs62281802	C	G	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	172244151	172244152	chr3:172244152:A:C	rs62281803	A	C	A	Sox1.mouse_HMG_4	3	1	+	7.742701334963117	3.9522155792218783	TGAATATCCAGTCC
chr3	172245926	172245927	chr3:172245927:C:T	rs1874259	C	T	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr3	172563494	172563495	chr3:172563495:G:A	rs6445068	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	173519206	173519207	chr3:173519207:G:A	rs116135885	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.3016652901579375	0.39291051084271733	GGAATGTCCAGTCA
chr3	173617393	173617394	chr3:173617394:A:G	rs6785544	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr3	173617398	173617399	chr3:173617399:A:G	rs73174591	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr3	173762738	173762739	chr3:173762739:A:G	rs73880571	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	173773605	173773606	chr3:173773606:T:C	rs1948161	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr3	173886152	173886153	chr3:173886153:G:A	rs142809097	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr3	174128752	174128753	chr3:174128753:G:T	rs55717421	G	T	G	Sox1.mouse_HMG_4	7	1	-	7.384849560523233	7.358518315161413	TGAATGTCCAGGCA
chr3	174207834	174207835	chr3:174207835:G:A	rs1421420	G	A	a	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	174586731	174586732	chr3:174586732:G:A	rs73042666	G	A	A	Sox1.mouse_HMG_4	7	1	+	10.342583807319523	11.294010795281352	TGAACACGTATTCA
chr3	174821598	174821599	chr3:174821599:A:C	chr3:174821599:A:C	A	C	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr3	174861759	174861760	chr3:174861760:A:G	rs11925646	A	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr3	175151045	175151046	chr3:175151046:C:G	rs936481	C	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr3	175270513	175270514	chr3:175270514:T:A	rs28451790	T	A	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr3	175279871	175279872	chr3:175279872:G:C	rs4393918	G	C	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	175337969	175337970	chr3:175337970:T:G	rs2042126	T	G	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	175395655	175395656	chr3:175395656:G:A	rs17283743	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr3	175422217	175422218	chr3:175422218:A:G	rs79576956	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr3	175473257	175473258	chr3:175473258:G:A	rs79963640	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.833997334768897	-2.0747574445463233	TGAATCATCAATCA
chr3	175473287	175473288	chr3:175473288:G:A	rs13064493	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr3	176075687	176075688	chr3:176075688:C:T	rs7640642	C	T	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr3	176352823	176352824	chr3:176352824:A:G	rs6794205	A	G	A	Sox1.mouse_HMG_4	2	1	+	7.341470258471582	0.43271547915636144	GGAATTTTCAGTCA
chr3	177362298	177362299	chr3:177362299:G:A	rs73032396	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr3	177589175	177589176	chr3:177589176:G:A	rs503817	G	A	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr3	177704042	177704043	chr3:177704043:A:G	rs34066617	A	G	G	Sox1.mouse_HMG_4	6	1	+	7.569783621472162	7.651364350899453	TGAATGACTGTGCA
chr3	177792480	177792481	chr3:177792481:G:A	rs1004448	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr3	177879200	177879201	chr3:177879201:G:A	rs7612209	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr3	178062365	178062366	chr3:178062366:G:A	rs75030017	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.274471420751631	4.19289069132434	TGAATGGCCATGCT
chr3	178291181	178291182	chr3:178291182:G:T	rs4857765	G	T	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr3	178706104	178706105	chr3:178706105:A:G	rs76444070	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr3	178833989	178833990	chr3:178833990:G:T	rs4498018	G	T	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr3	179216277	179216278	chr3:179216278:C:G	rs140787254	C	G	c	Sox1.mouse_HMG_4	6	1	+	6.608417039643795	7.53817674358733	TGTATTCACATTCA
chr3	179348665	179348666	chr3:179348666:T:C	rs36077761	T	C	T	Sox1.mouse_HMG_4	7	1	+	7.7835128955236845	7.545600056338501	TGAAATATCATTCA
chr3	179356384	179356385	chr3:179356385:G:A	rs12487441	G	A	.	Sox1.mouse_HMG_4	11	1	+	7.1005487844682404	3.7342879726869818	TGAATGCTCAGGCA
chr3	179517848	179517849	chr3:179517849:G:A	rs10451880	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr3	180317537	180317538	chr3:180317538:T:A	rs73065372	T	A	T	Sox1.mouse_HMG_4	13	1	-	7.269639002631695	0.38689388665372526	TGAGTACACATTCA
chr3	180971259	180971260	chr3:180971260:T:A	rs8588	T	A	T	Sox1.mouse_HMG_4	7	1	-	10.582307904337279	10.846551988884283	TGAATGTATATGCA
chr3	180991398	180991399	chr3:180991399:T:G	rs6770368	T	G	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr3	181343839	181343840	chr3:181343840:G:T	rs77835992	G	T	-	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	181615724	181615725	chr3:181615725:T:A	rs4103351	T	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	181785917	181785918	chr3:181785918:T:C	rs62290026	T	C	T	Sox1.mouse_HMG_4	10	1	+	5.981426458961353	-0.8943426741629283	TGACTGTGCATGCA
chr3	182259964	182259965	chr3:182259965:C:T	rs74965416	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.678947096062942	-2.229807683252279	TGACCATCCATGCA
chr3	182324120	182324121	chr3:182324121:C:T	rs923339	C	T	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	182937995	182937996	chr3:182937996:T:C	rs6787623	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	183304428	183304429	chr3:183304429:A:G	rs9875596	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr3	183438865	183438866	chr3:183438866:G:A	rs139300124	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr3	184714980	184714981	chr3:184714981:G:A	rs9870479	G	A	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	185933787	185933788	chr3:185933788:A:G	rs1193050086	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	185933826	185933827	chr3:185933827:G:T	rs7638894	G	T	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr3	185934395	185934396	chr3:185934396:T:C	rs1862903	T	C	C	Sox1.mouse_HMG_4	4	1	-	6.530621648180576	6.530621648180576	TGAAAAGGAATTCA
chr3	185938440	185938441	chr3:185938441:A:T	rs908943903	A	T	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr3	185960924	185960925	chr3:185960925:C:T	rs77106455	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.313638849499632	0.4048840701844114	GGAACTACAATTCA
chr3	185977260	185977261	chr3:185977261:C:T	rs10804903	C	T	T	Sox1.mouse_HMG_4	12	1	+	7.269639002631695	0.36088422331647396	TGAGTACACATTCA
chr3	186134156	186134157	chr3:186134157:T:C	rs10937243	T	C	C	Sox1.mouse_HMG_4	4	1	+	4.197519955439863	1.4755031366124642	TGAATGGCCAATCC
chr3	186277406	186277407	chr3:186277407:T:C	rs1541614	T	C	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr3	186569261	186569262	chr3:186569262:C:T	rs73057502	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.668986328670903	4.527955030343763	TGAAGAGCCATTCC
chr3	186570243	186570244	chr3:186570244:T:C	rs534861419	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	186743000	186743001	chr3:186743001:A:G	chr3:186743001:A:G	A	G	a	Sox1.mouse_HMG_4	4	1	-	7.3659713583663695	4.643954539538971	GGAATAGAAAGTCA
chr3	186755026	186755027	chr3:186755027:C:T	rs1846899	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr3	186978924	186978925	chr3:186978925:G:A	rs4686824	G	A	A	Sox1.mouse_HMG_4	9	1	+	7.315634059663291	10.680454947166298	TGAACTCCTGTTCA
chr3	186978929	186978930	chr3:186978930:A:G	rs4686825	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr3	187196814	187196815	chr3:187196815:C:T	rs6772329	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr3	187228132	187228133	chr3:187228133:G:T	rs9878529	G	T	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr3	187719863	187719864	chr3:187719864:C:T	rs375827487	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	187734693	187734694	chr3:187734694:G:T	rs9827569	G	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	187992996	187992997	chr3:187992997:C:G	rs73186901	C	G	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr3	188024053	188024054	chr3:188024054:A:G	rs6777684	A	G	G	Sox1.mouse_HMG_4	0	1	-	5.638710373356522	1.7371606261819215	TTAACAATCATTCA
chr3	188129685	188129686	chr3:188129686:G:A	rs115770757	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr3	188531534	188531535	chr3:188531535:A:C	rs551646999	A	C	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr3	188798464	188798465	chr3:188798465:G:A	rs4686996	G	A	A	Sox1.mouse_HMG_4	12	1	-	7.382307722563304	0.4735529432480836	AGAATAAAAATTCA
chr3	189399489	189399490	chr3:189399490:G:A	rs260562	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	189485526	189485527	chr3:189485527:T:C	rs6784749	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	189485540	189485541	chr3:189485541:G:A	rs6771927	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr3	189721195	189721196	chr3:189721196:T:C	rs116628953	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	189782277	189782278	chr3:189782278:G:A	rs7650285	G	A	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr3	189825298	189825299	chr3:189825299:A:G	rs112835411	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	189946536	189946537	chr3:189946537:C:G	rs1666426	C	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	189946539	189946540	chr3:189946540:G:T	rs3114673	G	T	G	Sox1.mouse_HMG_4	1	1	+	7.044815396813345	0.13606061749812493	TGAATATAAACTCA
chr3	190175718	190175719	chr3:190175719:T:G	rs17425771	T	G	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	190326843	190326844	chr3:190326844:T:G	rs3954261	T	G	G	Sox1.mouse_HMG_4	9	1	-	9.031707509327424	2.155938376203143	GGAACAGTCATTCA
chr3	190609770	190609771	chr3:190609771:T:A	rs6778019	T	A	A	Sox1.mouse_HMG_4	9	1	-	4.616962167168591	-2.2588069659556895	TGGATAACTAGTCA
chr3	190697562	190697563	chr3:190697563:G:A	rs80266539	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr3	190863371	190863372	chr3:190863372:T:C	rs9682599	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr3	190863375	190863376	chr3:190863376:A:G	rs62286314	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr3	191248182	191248183	chr3:191248183:G:A	rs9855647	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	191268203	191268204	chr3:191268204:C:T	rs11710136	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr3	191555201	191555202	chr3:191555202:G:A	rs879474	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr3	191557678	191557679	chr3:191557679:C:T	rs6444557	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr3	191915823	191915824	chr3:191915824:C:T	rs4444660	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr3	192716899	192716900	chr3:192716900:G:A	rs6764837	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	192820523	192820524	chr3:192820524:T:C	rs6444663	T	C	C	Sox1.mouse_HMG_4	9	1	-	4.632914233259322	1.2680933457563148	TGACAAATCATTCA
chr3	192845429	192845430	chr3:192845430:T:C	rs9858084	T	C	t	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	192845445	192845446	chr3:192845446:C:T	rs56885009	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr3	192921838	192921839	chr3:192921839:G:C	rs769584	G	C	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr3	193095674	193095675	chr3:193095675:C:T	rs7638586	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr3	193095686	193095687	chr3:193095687:T:C	rs62288424	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.426128736683295	-2.4566163792946742	TGAGTGATCATGCA
chr3	193506616	193506617	chr3:193506617:T:A	rs34282623	T	A	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr3	193822753	193822754	chr3:193822754:G:A	rs180765202	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr3	193829084	193829085	chr3:193829085:G:A	rs2030580	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr3	193851697	193851698	chr3:193851698:A:G	rs73078140	A	G	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr3	194068048	194068049	chr3:194068049:T:C	rs6773942	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr3	194068073	194068074	chr3:194068074:C:A	rs6444768	C	A	A	Sox1.mouse_HMG_4	1	1	-	6.539754136452828	-0.36900064286239465	CGAATTTACATTCC
chr3	194079610	194079611	chr3:194079611:G:A	rs113373392	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr3	194079642	194079643	chr3:194079643:C:T	rs6787780	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr3	194089584	194089585	chr3:194089585:G:A	rs9852933	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr3	194161725	194161726	chr3:194161726:G:T	rs7652270	G	T	T	Sox1.mouse_HMG_4	2	1	+	4.526287314293272	4.526287314293272	TGGACACACATTCA
chr3	194298753	194298754	chr3:194298754:G:A	rs570852645	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr3	194508429	194508430	chr3:194508430:A:G	rs11915218	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr3	194680122	194680123	chr3:194680123:G:A	rs9873224	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.248461757414379	-2.6602930219008423	TGTATGGCCATGCA
chr3	194685596	194685597	chr3:194685597:G:A	rs538356827	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr3	194713806	194713807	chr3:194713807:T:C	rs75041400	T	C	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr3	194731683	194731684	chr3:194731684:T:G	rs912305936	T	G	t	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr3	194769007	194769008	chr3:194769008:C:T	rs3796157	C	T	C	Sox1.mouse_HMG_4	8	1	+	6.818513465431247	6.677482167104108	TGAATTCTCAGTCC
chr3	194769017	194769018	chr3:194769018:C:T	chr3:194769018:C:T	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr3	194773080	194773081	chr3:194773081:C:T	rs114563563	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	194830338	194830339	chr3:194830339:T:C	rs4677757	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.76289598918913	1.3980751016861241	TGATTCGTTATTCA
chr3	194883912	194883913	chr3:194883913:C:T	rs55814528	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr3	194956024	194956025	chr3:194956025:T:C	rs823013	T	C	T	Sox1.mouse_HMG_4	8	1	+	7.613704838239959	7.754736136567099	TGAATCTATGTTCA
chr3	195719364	195719365	chr3:195719365:T:G	rs61516882	T	G	T	Sox1.mouse_HMG_4	13	1	-	6.489616135382229	2.891534584810463	TAAATACAAATTCA
chr3	195760819	195760820	chr3:195760820:G:A	rs952136801	G	A	g	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr3	195769920	195769921	chr3:195769921:T:C	rs3096333	T	C	t	Sox1.mouse_HMG_4	0	1	+	4.867914060050673	0.9663643128760719	TGAATAGCCAGACA
chr3	195813274	195813275	chr3:195813275:A:G	rs60632417	A	G	a	Sox1.mouse_HMG_4	0	1	-	5.489032664427747	1.5874829172531475	TGAACAGACTTTCA
chr3	195913398	195913399	chr3:195913399:T:C	rs11185501	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr3	195913415	195913416	chr3:195913416:A:G	rs6805088	A	G	A	Sox1.mouse_HMG_4	13	1	+	6.0559494181645	-0.826795697813469	TGAATGGGAGTGCA
chr3	195982040	195982041	chr3:195982041:A:G	rs59688909	A	G	-	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr3	195983099	195983100	chr3:195983100:T:C	rs111799574	T	C	-	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr3	196013489	196013490	chr3:196013490:A:G	rs78720551	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr3	196165036	196165037	chr3:196165037:G:A	rs55984064	G	A	-	Sox1.mouse_HMG_4	6	1	+	4.138946241687258	4.057365512259971	GGAATGGACATTGA
chr3	196165039	196165040	chr3:196165040:A:G	rs56131069	A	G	-	Sox1.mouse_HMG_4	9	1	+	4.138946241687258	0.7741253541842521	GGAATGGACATTGA
chr3	196977310	196977311	chr3:196977311:T:C	rs540210	T	C	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr3	196991374	196991375	chr3:196991375:T:C	rs115735588	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr3	197204853	197204854	chr3:197204854:C:T	rs144299438	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr3	197425319	197425320	chr3:197425320:C:T	rs35487798	C	T	C	Sox1.mouse_HMG_4	5	1	-	7.103754641253276	7.545533863858615	TGAATGCTCTTTCA
chr3	197751686	197751687	chr3:197751687:C:G	rs4857519	C	G	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr3	197878660	197878661	chr3:197878661:T:G	rs114820623	T	G	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr3	197906578	197906579	chr3:197906579:C:T	chr3:197906579:C:T	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr4	37015	37016	chr4:37016:G:A	rs1330660940	G	A	g	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr4	173914	173915	chr4:173915:G:A	rs73213573	G	A	G	Sox1.mouse_HMG_4	12	1	+	8.204395082426029	8.204395082426029	TGAATAGCCATTGA
chr4	478606	478607	chr4:478607:A:T	rs77878422	A	T	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr4	637844	637845	chr4:637845:C:T	rs36117387	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr4	660091	660092	chr4:660092:C:T	rs35894204	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr4	916731	916732	chr4:916732:T:C	rs4690332	T	C	C	Sox1.mouse_HMG_4	10	1	+	6.727000000872499	-0.1487691322517828	GGAATGCTTATGCA
chr4	1065009	1065010	chr4:1065010:C:T	rs6599278	C	T	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr4	1065044	1065045	chr4:1065045:G:A	rs6599279	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr4	1254498	1254499	chr4:1254499:G:C	rs1250087	G	C	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr4	1290943	1290944	chr4:1290944:G:C	rs4974586	G	C	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr4	1290952	1290953	chr4:1290953:C:T	rs2178442	C	T	C	Sox1.mouse_HMG_4	10	1	-	4.77617483279874	1.2652265871774657	AGAATAAACAGTCA
chr4	1305483	1305484	chr4:1305484:G:A	rs77177346	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr4	1498367	1498368	chr4:1498368:G:C	rs190745971	G	C	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	1499234	1499235	chr4:1499235:G:A	rs13146417	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr4	2135444	2135445	chr4:2135445:C:T	rs6857435	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr4	2413673	2413674	chr4:2413674:T:C	rs10031150	T	C	T	Sox1.mouse_HMG_4	0	1	+	5.600861944237041	1.6993121970624407	TGAAAACGAATTCA
chr4	2420487	2420488	chr4:2420488:C:T	rs11248104	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	2456922	2456923	chr4:2456923:A:T	rs116327255	A	T	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	3566777	3566778	chr4:3566778:C:T	rs1741573	C	T	c	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr4	3679737	3679738	chr4:3679738:A:G	rs57774075	A	G	G	Sox1.mouse_HMG_4	8	1	+	6.842161542665528	1.5388566346064516	TGAAATGAAATTCA
chr4	3685112	3685113	chr4:3685113:A:G	rs28444853	A	G	G	Sox1.mouse_HMG_4	11	1	-	3.999412084568325	-2.8810028296192445	TGAATTGCCTTTCC
chr4	3711537	3711538	chr4:3711538:A:T	rs916187	A	T	T	Sox1.mouse_HMG_4	4	1	-	4.877212017230385	-1.9688699652681954	TGAATAGTCAATCC
chr4	3719523	3719524	chr4:3719524:G:T	rs2748770	G	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr4	3745776	3745777	chr4:3745777:T:C	rs142588145	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	3855763	3855764	chr4:3855764:T:C	rs138455140	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.854191025388178	2.9526412782135782	TGAGTGCCCATTCA
chr4	4043206	4043207	chr4:4043207:A:G	rs9995125	A	G	-	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr4	4255597	4255598	chr4:4255598:A:T	rs76338880	A	T	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	4317877	4317878	chr4:4317878:G:C	rs2044152	G	C	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr4	4488968	4488969	chr4:4488969:T:A	rs1441085	T	A	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr4	4523346	4523347	chr4:4523347:G:A	rs10937873	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr4	4704589	4704590	chr4:4704590:A:G	rs7656737	A	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr4	4913997	4913998	chr4:4913998:A:G	rs10213436	A	G	A	Sox1.mouse_HMG_4	9	1	+	6.731453145537645	3.366632258034639	GGAATGGGCAGTCA
chr4	4915226	4915227	chr4:4915227:T:C	rs59421199	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.717376681848218	0.8299567720440202	TGAAAGAACATTCA
chr4	5002310	5002311	chr4:5002311:G:C	rs111823711	G	C	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr4	5065106	5065107	chr4:5065107:G:A	rs10937618	G	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr4	5156708	5156709	chr4:5156709:G:A	rs1542203	G	A	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	5156956	5156957	chr4:5156957:G:C	rs7698183	G	C	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr4	5378165	5378166	chr4:5378166:G:T	rs138150982	G	T	G	Sox1.mouse_HMG_4	8	1	-	7.687689531222517	6.929001533484074	TGAATGAACACTCA
chr4	5448058	5448059	chr4:5448059:G:A	rs7700153	G	A	G	Sox1.mouse_HMG_4	1	1	-	5.374466288809518	5.374466288809518	TCAACAAACATTCA
chr4	5450663	5450664	chr4:5450664:G:A	rs16837251	G	A	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr4	5635914	5635915	chr4:5635915:G:A	rs148918867	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr4	5711917	5711918	chr4:5711918:A:G	rs939875487	A	G	A	Sox1.mouse_HMG_4	4	1	-	10.53805325564599	7.8160364368185915	GGAATAGGCATTCA
chr4	5748056	5748057	chr4:5748057:G:A	rs4689312	G	A	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	5748076	5748077	chr4:5748077:G:A	rs4689311	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr4	5748079	5748080	chr4:5748080:C:T	rs56193413	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr4	5748086	5748087	chr4:5748087:C:T	rs4688964	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr4	5832171	5832172	chr4:5832172:T:A	rs6856939	T	A	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr4	5940885	5940886	chr4:5940886:A:G	rs7664218	A	G	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr4	5940907	5940908	chr4:5940908:A:C	rs7664229	A	C	C	Sox1.mouse_HMG_4	7	1	+	4.7943350169505505	4.820666262312372	TGAAAAAACAGTCA
chr4	5940921	5940922	chr4:5940922:C:G	rs7691494	C	G	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr4	6020171	6020172	chr4:6020172:A:G	rs6446435	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr4	6105016	6105017	chr4:6105017:A:C	rs13111011	A	C	A	Sox1.mouse_HMG_4	11	1	-	7.286564426337653	3.772410323931344	TGAACTAAAATTCC
chr4	6189445	6189446	chr4:6189446:C:A	rs1877761	C	A	A	Sox1.mouse_HMG_4	1	1	-	7.400467906715114	0.49171312739989337	TGAAAAAAAATTCA
chr4	6232658	6232659	chr4:6232659:G:C	rs9968483	G	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr4	6399601	6399602	chr4:6399602:T:C	rs7653967	T	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr4	6474990	6474991	chr4:6474991:A:G	rs4689459	A	G	a	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr4	6715985	6715986	chr4:6715986:G:A	rs112602357	G	A	G	Sox1.mouse_HMG_4	4	1	-	6.893605252957017	9.615622071784417	CGAACTCACATTCA
chr4	6716004	6716005	chr4:6716005:G:T	rs183544211	G	T	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr4	7027378	7027379	chr4:7027379:C:A	rs59762399	C	A	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr4	7398953	7398954	chr4:7398954:C:T	rs12512986	C	T	C	Sox1.mouse_HMG_4	13	1	+	5.786435019362537	2.5017714539563336	CGAATGTGCATTCC
chr4	7398973	7398974	chr4:7398974:A:G	rs13125483	A	G	a	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr4	7632103	7632104	chr4:7632104:T:G	rs12509359	T	G	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	7786881	7786882	chr4:7786882:T:C	rs77239534	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	7851381	7851382	chr4:7851382:T:C	rs4388087	T	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	7868130	7868131	chr4:7868131:A:G	rs28699608	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr4	7942157	7942158	chr4:7942158:C:A	rs4696827	C	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr4	8288079	8288080	chr4:8288080:A:G	rs9985550	A	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr4	8528961	8528962	chr4:8528962:T:C	rs1013012197	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr4	8540141	8540142	chr4:8540142:T:C	rs6447879	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr4	8723563	8723564	chr4:8723564:C:T	rs73090146	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr4	8747214	8747215	chr4:8747215:G:T	rs149542564	G	T	g	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr4	8775214	8775215	chr4:8775215:A:T	rs143563549	A	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr4	8846000	8846001	chr4:8846001:A:G	rs75627699	A	G	g	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr4	9900937	9900938	chr4:9900938:T:C	rs13151822	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	9995265	9995266	chr4:9995266:T:C	rs13111638	T	C	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	10003751	10003752	chr4:10003752:T:C	rs113085145	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.604643620173544	0.7288744870492623	TGACTGGTCATGCA
chr4	10039340	10039341	chr4:10039341:C:T	rs10516196	C	T	C	Sox1.mouse_HMG_4	1	1	-	5.312745014080454	-1.5960097652347651	TGGACATTCATTCA
chr4	10067210	10067211	chr4:10067211:G:A	rs10939690	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr4	10113738	10113739	chr4:10113739:T:C	rs4348091	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr4	10694990	10694991	chr4:10694991:G:A	rs78752270	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr4	10721879	10721880	chr4:10721880:T:G	rs4293778	T	G	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	10983508	10983509	chr4:10983509:C:T	rs138327471	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr4	11105873	11105874	chr4:11105874:C:G	rs6828064	C	G	C	Sox1.mouse_HMG_4	12	1	+	11.755327869092831	4.846573089777611	TGAATAATCATGCA
chr4	11471125	11471126	chr4:11471126:A:G	rs1465496306	A	G	A	Sox1.mouse_HMG_4	6	1	-	7.457547536247616	6.93533392100744	TGAAATTTCATTCA
chr4	11599661	11599662	chr4:11599662:T:G	rs67869216	T	G	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr4	11709498	11709499	chr4:11709499:T:C	rs7664785	T	C	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr4	11714741	11714742	chr4:11714742:G:C	rs3849027	G	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr4	11867880	11867881	chr4:11867881:T:C	rs10516237	T	C	T	Sox1.mouse_HMG_4	5	1	+	7.07051301137605	4.1506846012469625	CGAATTGTTATTCC
chr4	12487661	12487662	chr4:12487662:T:A	rs78597391	T	A	T	Sox1.mouse_HMG_4	6	1	-	5.288106100971851	4.962140741695783	TGAACAACTATCCA
chr4	13698922	13698923	chr4:13698923:T:C	rs11725299	T	C	T	Sox1.mouse_HMG_4	2	1	-	4.805423053359293	-2.1033317259559254	AGAACTACCATTCA
chr4	13856396	13856397	chr4:13856397:G:A	rs368711057	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr4	14103083	14103084	chr4:14103084:C:A	rs73796931	C	A	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	14678202	14678203	chr4:14678203:C:G	rs77065359	C	G	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr4	15239915	15239916	chr4:15239916:A:G	rs113707114	A	G	a	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr4	15254409	15254410	chr4:15254410:A:G	rs34831160	A	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr4	15420959	15420960	chr4:15420960:C:T	rs77377963	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr4	15420989	15420990	chr4:15420990:A:C	rs985264891	A	C	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	15682610	15682611	chr4:15682611:C:T	rs12640192	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr4	15861246	15861247	chr4:15861247:A:T	rs6812362	A	T	t	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr4	15983429	15983430	chr4:15983430:C:T	rs10488967	C	T	C	Sox1.mouse_HMG_4	12	1	+	10.706291145974587	3.7975363666593687	GGAATTTTCATTCA
chr4	16177066	16177067	chr4:16177067:A:T	rs317876	A	T	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr4	16334820	16334821	chr4:16334821:C:T	rs73239725	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.671696019547461	8.393712838374862	TGAACAATCACTCA
chr4	16443653	16443654	chr4:16443654:G:C	rs193102001	G	C	g	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr4	16443679	16443680	chr4:16443680:T:A	rs532294549	T	A	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr4	16573864	16573865	chr4:16573865:A:C	chr4:16573865:A:C	A	C	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr4	16689769	16689770	chr4:16689770:G:A	rs35742096	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	17109505	17109506	chr4:17109506:C:T	rs1879751	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr4	17462168	17462169	chr4:17462169:A:G	rs7671922	A	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	17544656	17544657	chr4:17544657:A:T	rs4698190	A	T	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr4	17787559	17787560	chr4:17787560:T:C	rs16895735	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr4	18309641	18309642	chr4:18309642:G:A	rs13122350	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	18692378	18692379	chr4:18692379:A:C	rs938841	A	C	C	Sox1.mouse_HMG_4	8	1	-	7.767769124087118	1.8468075166167395	TGACCACTTATTCA
chr4	19455374	19455375	chr4:19455375:T:A	rs28625215	T	A	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr4	19739420	19739421	chr4:19739421:A:G	rs11936583	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.011162676014333	0.12374276621013625	CGAATAATAATTCC
chr4	19966828	19966829	chr4:19966829:G:A	rs61790437	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	19982914	19982915	chr4:19982915:T:C	rs17528672	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.36007732849773	0.47733221251976055	AGAATTAATATTCA
chr4	20788213	20788214	chr4:20788214:C:G	rs1546065	C	G	g	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr4	21949789	21949790	chr4:21949790:G:C	rs78627661	G	C	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr4	22334577	22334578	chr4:22334578:T:C	rs185767716	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr4	22483887	22483888	chr4:22483888:A:G	rs73802831	A	G	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	22688412	22688413	chr4:22688413:T:C	rs28495267	T	C	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr4	22717030	22717031	chr4:22717031:C:T	rs2013715	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr4	22788075	22788076	chr4:22788076:C:T	rs141905716	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.313638849499632	0.4048840701844114	GGAACTACAATTCA
chr4	23654782	23654783	chr4:23654783:T:A	chr4:23654783:T:A	T	A	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr4	23788508	23788509	chr4:23788509:C:T	rs2970884	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	24442796	24442797	chr4:24442797:C:A	rs6448271	C	A	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr4	24476400	24476401	chr4:24476401:G:T	rs73246452	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr4	24880436	24880437	chr4:24880437:T:C	rs3857117	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr4	24888209	24888210	chr4:24888210:C:T	rs78017329	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr4	25013893	25013894	chr4:25013894:A:G	rs7687614	A	G	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr4	25576785	25576786	chr4:25576786:C:T	rs73110451	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	25736195	25736196	chr4:25736196:C:T	rs10155143	C	T	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr4	26074970	26074971	chr4:26074971:G:A	rs79809314	G	A	G	Sox1.mouse_HMG_4	0	1	-	7.222192945017519	11.123742692192117	CGAATTATTGTTCA
chr4	26141923	26141924	chr4:26141924:A:C	rs11947606	A	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr4	26141924	26141925	chr4:26141925:A:C	rs11947607	A	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr4	26815987	26815988	chr4:26815988:A:G	rs4299571	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.625771646209415	1.2609507587064084	TGAAGCACCATTCA
chr4	27176546	27176547	chr4:27176547:G:A	rs7673636	G	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr4	27361444	27361445	chr4:27361445:A:G	rs7684535	A	G	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	28403754	28403755	chr4:28403755:A:T	rs1510704	A	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	28445316	28445317	chr4:28445317:C:T	rs142850479	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr4	28926542	28926543	chr4:28926543:G:A	rs76259364	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.165277487049082	4.024246188721942	GCAATGGCCATTCA
chr4	29546700	29546701	chr4:29546701:A:C	rs12639975	A	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr4	29653472	29653473	chr4:29653473:A:G	rs111516342	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.840251956733038	4.118235137905638	TGAATTGTAATGCC
chr4	29844299	29844300	chr4:29844300:C:T	rs35115221	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr4	30716022	30716023	chr4:30716023:C:T	rs139635630	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr4	30969409	30969410	chr4:30969410:C:T	rs7660483	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr4	31339668	31339669	chr4:31339669:A:T	rs1426984	A	T	T	Sox1.mouse_HMG_4	13	1	+	6.634748285005615	-0.2479968309723546	TGAATTCCCATTAA
chr4	31660191	31660192	chr4:31660192:T:G	rs1510806	T	G	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr4	32212570	32212571	chr4:32212571:T:G	rs73128224	T	G	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr4	32212612	32212613	chr4:32212613:T:C	rs10017038	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr4	32369564	32369565	chr4:32369565:T:C	rs727173	T	C	C	Sox1.mouse_HMG_4	7	1	-	10.456312110502788	9.50488512254096	TGAATCCATATTCA
chr4	32396833	32396834	chr4:32396834:C:T	rs72622749	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	32415765	32415766	chr4:32415766:G:A	rs1037498	G	A	a	Sox1.mouse_HMG_4	11	1	+	11.165118425269757	7.7988576134885	TGAATATACATGCA
chr4	32486108	32486109	chr4:32486109:G:A	rs4413448	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr4	32503146	32503147	chr4:32503147:T:C	rs7677345	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr4	32545645	32545646	chr4:32545646:G:C	rs28562174	G	C	G	Sox1.mouse_HMG_4	4	1	-	7.716316688477404	3.592251524806221	TGAACTGTAATGCA
chr4	32858337	32858338	chr4:32858338:G:A	rs7435276	G	A	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	32994920	32994921	chr4:32994921:C:T	rs6834793	C	T	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr4	33032805	33032806	chr4:33032806:T:G	rs6820092	T	G	T	Sox1.mouse_HMG_4	13	1	-	6.8190907603990185	3.221009209827253	TGAATATGCATTTA
chr4	35102935	35102936	chr4:35102936:C:T	rs2375216	C	T	c	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	35227222	35227223	chr4:35227223:T:C	rs12643098	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr4	35513507	35513508	chr4:35513508:T:C	rs7684681	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.493716986678476	-0.3937029231257212	TGAATTCCTATTGA
chr4	36944474	36944475	chr4:36944475:G:A	rs1373473	G	A	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr4	36944483	36944484	chr4:36944484:C:A	rs76542854	C	A	C	Sox1.mouse_HMG_4	7	1	+	5.346649875411787	5.320318630049966	TGAACAACCAGTCC
chr4	36978519	36978520	chr4:36978520:G:A	rs13145944	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	37007028	37007029	chr4:37007029:T:C	rs4623015	T	C	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr4	37057516	37057517	chr4:37057517:G:A	rs9647452	G	A	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr4	37612696	37612697	chr4:37612697:T:C	rs73807850	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr4	37642096	37642097	chr4:37642097:G:A	rs73807871	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr4	37697282	37697283	chr4:37697283:C:T	rs1310253920	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr4	37760234	37760235	chr4:37760235:G:A	rs76352353	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr4	37800293	37800294	chr4:37800294:C:T	rs2911882	C	T	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr4	37800299	37800300	chr4:37800300:T:C	rs6832381	T	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	37800301	37800302	chr4:37800302:A:T	rs2911881	A	T	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr4	37800329	37800330	chr4:37800330:G:A	rs6849324	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr4	37835595	37835596	chr4:37835596:G:A	rs2608309	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr4	38013891	38013892	chr4:38013892:T:A	rs6531601	T	A	A	Sox1.mouse_HMG_4	9	1	-	7.19915522075856	0.32338608763427845	TGACTAGCAAGTCA
chr4	38157577	38157578	chr4:38157578:C:A	rs138373389	C	A	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	38290350	38290351	chr4:38290351:T:C	rs11939640	T	C	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr4	38529822	38529823	chr4:38529823:C:T	rs60173751	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr4	38758310	38758311	chr4:38758311:A:G	rs74809218	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr4	38942186	38942187	chr4:38942187:T:C	rs12648029	T	C	T	Sox1.mouse_HMG_4	8	1	-	6.582039082932981	1.278734174873906	TGAATTTTAAGTCC
chr4	39099688	39099689	chr4:39099689:C:G	rs2566152	C	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr4	39356437	39356438	chr4:39356438:C:T	rs11096995	C	T	T	Sox1.mouse_HMG_4	12	1	+	8.448153810594787	1.539399031279567	TGAACGGTTATTCC
chr4	39432378	39432379	chr4:39432379:G:A	rs141102566	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr4	39666755	39666756	chr4:39666756:A:G	rs62307840	A	G	a	Sox1.mouse_HMG_4	3	1	+	9.186733516010628	2.2993136062064305	TGAATTCCAATTCC
chr4	40038908	40038909	chr4:40038909:T:C	rs13434517	T	C	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr4	40242213	40242214	chr4:40242214:G:A	rs79539994	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr4	40524589	40524590	chr4:40524590:T:A	rs79986086	T	A	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr4	41061245	41061246	chr4:41061246:T:C	rs17588767	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	41195408	41195409	chr4:41195409:C:G	rs12643571	C	G	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr4	41394613	41394614	chr4:41394614:A:C	rs7670762	A	C	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr4	41409167	41409168	chr4:41409168:G:C	rs78089582	G	C	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr4	41688392	41688393	chr4:41688393:C:T	rs16853485	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr4	41740948	41740949	chr4:41740949:C:G	rs150819659	C	G	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	42396585	42396586	chr4:42396586:C:T	rs150919716	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	42710585	42710586	chr4:42710586:T:A	chr4:42710586:T:A	T	A	T	Sox1.mouse_HMG_4	13	1	-	4.270119136307645	-2.6126259796703235	TGAATCTCCTTTCA
chr4	42710589	42710590	chr4:42710590:A:C	chr4:42710590:A:C	A	C	A	Sox1.mouse_HMG_4	9	1	-	4.270119136307645	7.78106738192892	TGAATCTCCTTTCA
chr4	43126796	43126797	chr4:43126797:G:A	rs6851917	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr4	43682753	43682754	chr4:43682754:T:A	rs1167863574	T	A	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	44896923	44896924	chr4:44896924:A:T	rs4695059	A	T	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	45029369	45029370	chr4:45029370:A:G	rs10155483	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr4	45101256	45101257	chr4:45101257:T:C	rs932606729	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr4	45630232	45630233	chr4:45630233:A:G	rs1456495	A	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr4	47101694	47101695	chr4:47101695:A:T	chr4:47101695:A:T	A	T	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr4	47222030	47222031	chr4:47222031:C:T	rs28653395	C	T	C	Sox1.mouse_HMG_4	0	1	+	6.65331090157445	10.55486064874905	CGAATGATAATGCA
chr4	47557984	47557985	chr4:47557985:C:A	rs34208443	C	A	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr4	47562655	47562656	chr4:47562656:G:A	rs28498302	G	A	G	Sox1.mouse_HMG_4	12	1	-	7.830497111183485	0.9217423318682645	TGAACGGTAATTCC
chr4	48024729	48024730	chr4:48024730:C:T	rs6857248	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr4	48227868	48227869	chr4:48227869:A:G	rs2664017	A	G	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr4	48254495	48254496	chr4:48254496:A:C	rs140664425	A	C	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr4	48435720	48435721	chr4:48435721:C:T	rs11934876	C	T	T	Sox1.mouse_HMG_4	6	1	+	6.155845846831704	6.6780594620718805	TAAATACGTATTCA
chr4	48618786	48618787	chr4:48618787:T:C	rs75432100	T	C	T	Sox1.mouse_HMG_4	0	1	+	11.407156336380373	7.505606589205771	TGAATAAACATTCC
chr4	48683971	48683972	chr4:48683972:C:T	rs35726605	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr4	48698779	48698780	chr4:48698780:A:G	rs77600820	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr4	52250099	52250100	chr4:52250100:G:A	rs11133437	G	A	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr4	52698239	52698240	chr4:52698240:T:C	rs12507960	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.727000000872499	4.004983182045099	GGAATGCTTATGCA
chr4	52958537	52958538	chr4:52958538:C:T	rs577523766	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr4	52968536	52968537	chr4:52968537:G:A	rs116411850	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr4	53005844	53005845	chr4:53005845:A:G	rs115465844	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr4	53188301	53188302	chr4:53188302:G:A	rs150543537	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr4	53188595	53188596	chr4:53188596:T:C	rs10027975	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr4	53465699	53465700	chr4:53465700:A:G	rs10028142	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr4	53775651	53775652	chr4:53775652:A:G	rs2412491	A	G	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr4	53865077	53865078	chr4:53865078:G:A	rs11728702	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr4	53866107	53866108	chr4:53866108:G:A	rs74711170	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr4	54457964	54457965	chr4:54457965:C:A	rs1507964	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr4	54838132	54838133	chr4:54838133:G:T	rs2646317	G	T	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	55172871	55172872	chr4:55172872:A:T	rs3986296	A	T	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr4	55656977	55656978	chr4:55656978:C:T	rs73236174	C	T	T	Sox1.mouse_HMG_4	7	1	+	3.9187256231200553	4.156638462305239	GGACTGGCCAGTCA
chr4	55809206	55809207	chr4:55809207:C:T	rs4864563	C	T	T	Sox1.mouse_HMG_4	1	1	-	3.4963751335017985	-3.412379645813421	TGAATGCCCAGCCA
chr4	56758369	56758370	chr4:56758370:A:T	rs118011046	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	56758390	56758391	chr4:56758391:C:G	rs6825706	C	G	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr4	56880189	56880190	chr4:56880190:A:G	rs2170074	A	G	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr4	56958973	56958974	chr4:56958974:T:C	rs781668	T	C	T	Sox1.mouse_HMG_4	6	1	-	6.9882432095541995	7.069823938981489	TGAATCAGTAGTCA
chr4	57071318	57071319	chr4:57071319:T:C	rs17787988	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr4	57265989	57265990	chr4:57265990:C:G	rs112683912	C	G	C	Sox1.mouse_HMG_4	12	1	+	7.715467095915729	0.8067123166005086	TGAATGATCATGCC
chr4	57293667	57293668	chr4:57293668:C:G	rs73819076	C	G	c	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr4	57405915	57405916	chr4:57405916:T:C	rs1012188	T	C	C	Sox1.mouse_HMG_4	8	1	+	6.731629825863661	6.8726611241908	TGAATTCTTATTAA
chr4	57734730	57734731	chr4:57734731:G:A	rs343518	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr4	57734760	57734761	chr4:57734761:C:G	rs343517	C	G	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr4	58766745	58766746	chr4:58766746:G:A	rs2166996	G	A	G	Sox1.mouse_HMG_4	9	1	-	4.682485746704076	4.682485746704076	TGAACACTTCTTCA
chr4	58766747	58766748	chr4:58766748:A:G	rs2166995	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.682485746704076	4.444572907518893	TGAACACTTCTTCA
chr4	59126621	59126622	chr4:59126622:A:G	rs1393608	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr4	59473625	59473626	chr4:59473626:G:A	rs62307275	G	A	A	Sox1.mouse_HMG_4	1	1	+	6.53840003193075	-0.3703547473844717	CGAATGAAAGTTCA
chr4	60205512	60205513	chr4:60205513:G:A	rs116234430	G	A	g	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr4	60612315	60612316	chr4:60612316:T:A	rs7693399	T	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr4	60612333	60612334	chr4:60612334:A:T	rs981647154	A	T	A	Sox1.mouse_HMG_4	2	1	+	6.006255103901026	-0.9024996754141945	TGAATATGAAGTCC
chr4	60729522	60729523	chr4:60729523:C:T	rs4413435	C	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	60981237	60981238	chr4:60981238:A:G	rs8180200	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr4	62684211	62684212	chr4:62684212:T:C	rs56083063	T	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr4	64584529	64584530	chr4:64584530:G:A	rs11730496	G	A	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr4	64649763	64649764	chr4:64649764:G:A	rs11131557	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.394874739430976	0.486119960115756	TGAATTTTCATTGA
chr4	65024340	65024341	chr4:65024341:G:C	rs116541762	G	C	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr4	66367626	66367627	chr4:66367627:G:A	rs73224630	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr4	67037073	67037074	chr4:67037074:C:T	rs72894762	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	67122204	67122205	chr4:67122205:T:C	rs1216709007	T	C	T	Sox1.mouse_HMG_4	0	1	+	11.72491470407515	7.823364956900552	TGAACTGACATTCA
chr4	67374776	67374777	chr4:67374777:A:C	rs1866780	A	C	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	68180992	68180993	chr4:68180993:T:C	rs12507309	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.25497671423003	4.532959895402631	TGAATAGGCATCCA
chr4	68872661	68872662	chr4:68872662:C:G	rs112971295	C	G	g	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr4	69750576	69750577	chr4:69750577:C:A	rs144941529	C	A	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr4	69881269	69881270	chr4:69881270:G:A	rs1491428	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr4	69906417	69906418	chr4:69906418:G:A	rs11721565	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr4	70970975	70970976	chr4:70970976:G:A	rs72646427	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr4	71260724	71260725	chr4:71260725:A:G	rs2579331	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr4	71396676	71396677	chr4:71396677:T:C	chr4:71396677:T:C	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	71664477	71664478	chr4:71664478:C:A	rs1453477	C	A	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	72109750	72109751	chr4:72109751:A:G	rs115815780	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr4	72807352	72807353	chr4:72807353:A:C	rs1381252	A	C	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr4	72955346	72955347	chr4:72955347:C:A	rs12505905	C	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr4	73036791	73036792	chr4:73036792:A:T	chr4:73036792:A:T	A	T	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr4	73193270	73193271	chr4:73193271:T:A	rs7692425	T	A	T	Sox1.mouse_HMG_4	11	1	+	4.994588751236309	-1.8858261629512605	TGAACAGTACTTCA
chr4	73383598	73383599	chr4:73383599:C:T	rs35545060	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr4	73998911	73998912	chr4:73998912:T:C	rs541024100	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr4	74134660	74134661	chr4:74134661:G:T	rs528129291	G	T	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr4	74284442	74284443	chr4:74284443:T:C	rs28663170	T	C	T	Sox1.mouse_HMG_4	6	1	+	5.193048585264337	4.670834970024159	TGAGCATTTATTCA
chr4	74534597	74534598	chr4:74534598:T:C	rs1994941	T	C	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr4	74545193	74545194	chr4:74545194:G:A	rs72864210	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	74770465	74770466	chr4:74770466:C:A	rs11097375	C	A	C	Sox1.mouse_HMG_4	13	1	+	6.5806006262460635	10.178682176817828	TGAATTCCCAGTCC
chr4	74942515	74942516	chr4:74942516:C:T	rs6846434	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr4	74942553	74942554	chr4:74942554:T:G	rs10003137	T	G	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	75514875	75514876	chr4:75514876:G:A	rs72866268	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr4	75713720	75713721	chr4:75713721:T:G	rs2175640	T	G	T	Sox1.mouse_HMG_4	7	1	-	5.369916514907568	5.396247760269389	TGACTTCAAATTCC
chr4	75713726	75713727	chr4:75713727:C:T	rs2175639	C	T	T	Sox1.mouse_HMG_4	1	1	-	5.369916514907568	-1.5388382644076524	TGACTTCAAATTCC
chr4	76024531	76024532	chr4:76024532:A:G	rs4257674	A	G	A	Sox1.mouse_HMG_4	0	1	-	11.904661083996135	8.003111336821535	TGAATAATCAGTCA
chr4	77268302	77268303	chr4:77268303:T:C	rs57123831	T	C	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr4	77268313	77268314	chr4:77268314:C:A	rs78820475	C	A	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	77345284	77345285	chr4:77345285:T:C	rs1541662	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr4	77400276	77400277	chr4:77400277:C:T	rs10015193	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr4	77717336	77717337	chr4:77717337:T:C	rs3205281	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr4	77931619	77931620	chr4:77931620:T:A	rs7656319	T	A	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr4	78179527	78179528	chr4:78179528:C:T	rs4859519	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.668986328670903	-2.239768450644317	TGAAAAGCCATTCC
chr4	78200110	78200111	chr4:78200111:T:G	rs6842304	T	G	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr4	78427054	78427055	chr4:78427055:G:T	rs191725563	G	T	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr4	78657957	78657958	chr4:78657958:A:T	rs79082708	A	T	A	Sox1.mouse_HMG_4	11	1	-	14.563458664346797	7.6830437501592295	TGAATGAACATTCA
chr4	78764506	78764507	chr4:78764507:C:T	rs183353613	C	T	C	Sox1.mouse_HMG_4	0	1	-	5.8925385228939895	2.625634729015209	GGAATTTGCATTCC
chr4	78845465	78845466	chr4:78845466:A:G	rs17003465	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr4	78954017	78954018	chr4:78954018:C:A	rs9993426	C	A	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr4	79090640	79090641	chr4:79090641:G:A	rs6811637	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr4	79998873	79998874	chr4:79998874:C:T	rs73829337	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.9235103239866165	1.0147555446713954	TGAATATTTAGGCA
chr4	80006086	80006087	chr4:80006087:G:C	rs4690134	G	C	G	Sox1.mouse_HMG_4	6	1	-	6.074500900712068	7.004260604655603	TGACTCCCAATTCA
chr4	80336752	80336753	chr4:80336753:G:A	rs1458026	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr4	80401607	80401608	chr4:80401608:G:A	rs147318313	G	A	G	Sox1.mouse_HMG_4	11	1	+	6.862635945283057	3.4963751335017985	TGAATGCCCAGGCA
chr4	80486123	80486124	chr4:80486124:A:G	rs188698626	A	G	A	Sox1.mouse_HMG_4	4	1	-	8.442307921611212	5.720291102783812	TTAATAGTCATTCA
chr4	81492523	81492524	chr4:81492524:T:G	rs7691170	T	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	82728802	82728803	chr4:82728803:C:A	rs55782223	C	A	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr4	82761046	82761047	chr4:82761047:A:G	rs11729909	A	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr4	82793135	82793136	chr4:82793136:G:A	rs72925445	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.907642345656242	-2.0011124336589745	GGAAGAGTCATTCA
chr4	83171793	83171794	chr4:83171794:G:A	rs35886643	G	A	C	Sox1.mouse_HMG_4	0	1	-	8.586464836597292	12.488014583771893	CGAACAGTTATTCA
chr4	83208519	83208520	chr4:83208520:T:C	rs80125204	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr4	83516530	83516531	chr4:83516531:G:A	rs10032585	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	83538941	83538942	chr4:83538942:A:T	rs114824572	A	T	A	Sox1.mouse_HMG_4	4	1	-	10.027098737781136	3.181016755282557	TGAATCTGTATTCA
chr4	83727011	83727012	chr4:83727012:G:T	rs10022872	G	T	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	83855363	83855364	chr4:83855364:C:T	rs17007507	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	85107894	85107895	chr4:85107895:G:A	rs4295250	G	A	A	Sox1.mouse_HMG_4	4	1	-	4.374761839572191	7.0967786583995895	TGAACGCTCATTCT
chr4	85424133	85424134	chr4:85424134:A:G	rs2629703	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr4	85544986	85544987	chr4:85544987:C:T	rs1982700	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr4	85545005	85545006	chr4:85545006:T:G	rs1982699	T	G	G	Sox1.mouse_HMG_4	5	1	+	7.489581660350979	7.687689531222517	TGAATTAACACTCA
chr4	85642010	85642011	chr4:85642011:T:A	rs10000472	T	A	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr4	85700700	85700701	chr4:85700701:G:A	rs7439720	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr4	85744718	85744719	chr4:85744719:T:C	rs72656274	T	C	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr4	85837128	85837129	chr4:85837129:A:G	rs17011069	A	G	A	Sox1.mouse_HMG_4	8	1	-	7.902047328350382	8.043078626677522	GGAATAAATAGTCA
chr4	85956269	85956270	chr4:85956270:G:A	rs35922412	G	A	G	Sox1.mouse_HMG_4	12	1	-	5.341346965271489	-1.5674078140437315	TAAACAGCTATTCA
chr4	86100784	86100785	chr4:86100785:G:A	rs12644947	G	A	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	86994648	86994649	chr4:86994649:T:C	rs10015544	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.001260366427861	0.12549123330357914	TGACTTGATATGCA
chr4	87031233	87031234	chr4:87031234:G:T	rs558643165	G	T	G	Sox1.mouse_HMG_4	5	1	+	4.353852065197757	4.1557441943262186	TGAATGATCACTCC
chr4	87047627	87047628	chr4:87047628:T:C	rs61009470	T	C	T	Sox1.mouse_HMG_4	3	1	-	5.237185239455914	-1.6502346703482829	CGAATTGGAATTCC
chr4	87093817	87093818	chr4:87093818:C:G	rs62306532	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr4	87983189	87983190	chr4:87983190:A:C	rs9138	A	C	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr4	88002009	88002010	chr4:88002010:A:G	rs6843443	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	88002016	88002017	chr4:88002017:G:T	rs4640632	G	T	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr4	88285019	88285020	chr4:88285020:T:C	rs79190960	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.7534700552660905	0.8519203080914897	TGAACAGCAGTGCA
chr4	88662086	88662087	chr4:88662087:T:G	rs72883000	T	G	T	Sox1.mouse_HMG_4	10	1	+	6.868492788027349	3.503671900524343	TGAAATGCAATTCA
chr4	88665039	88665040	chr4:88665040:C:A	rs10000885	C	A	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	89512527	89512528	chr4:89512528:A:C	rs17175738	A	C	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr4	89520034	89520035	chr4:89520035:A:G	rs7654775	A	G	G	Sox1.mouse_HMG_4	10	1	-	5.292751882035138	-1.5830172510891425	TGAACAACTCTTCA
chr4	89661069	89661070	chr4:89661070:C:T	rs76753549	C	T	C	Sox1.mouse_HMG_4	9	1	-	7.543452376110341	10.908273263613346	TGAATGAATGTGCA
chr4	89744889	89744890	chr4:89744890:C:T	rs356203	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.693546520745083	4.611965791317793	TGATTAGATAGTCA
chr4	89820621	89820622	chr4:89820622:A:G	rs2619341	A	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr4	90072190	90072191	chr4:90072191:A:T	rs1031125	A	T	A	Sox1.mouse_HMG_4	13	1	+	7.023490760493434	0.1407456445154649	TGACTAGAAATGCA
chr4	90078671	90078672	chr4:90078672:C:T	rs6839358	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr4	90118631	90118632	chr4:90118632:C:T	rs7679917	C	T	C	Sox1.mouse_HMG_4	9	1	+	4.261147368990446	4.261147368990446	TGAATGTTCCGTCA
chr4	90305662	90305663	chr4:90305663:T:G	rs75045627	T	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr4	90543829	90543830	chr4:90543830:T:C	rs55835437	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr4	90543831	90543832	chr4:90543832:T:C	rs56013711	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr4	90640859	90640860	chr4:90640860:T:C	rs10010040	T	C	C	Sox1.mouse_HMG_4	9	1	-	7.160592714413496	3.7957718269104896	TGACTCATAATTCA
chr4	90683037	90683038	chr4:90683038:C:G	rs6852796	C	G	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr4	90791245	90791246	chr4:90791246:G:T	rs11097265	G	T	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	91111976	91111977	chr4:91111977:A:C	rs67816799	A	C	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr4	91573314	91573315	chr4:91573315:T:C	rs6532321	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr4	91965119	91965120	chr4:91965120:C:A	rs1472021	C	A	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr4	92387709	92387710	chr4:92387710:T:C	rs74670140	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr4	92580915	92580916	chr4:92580916:G:T	rs7686627	G	T	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr4	92825760	92825761	chr4:92825761:G:A	rs73837354	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	93907158	93907159	chr4:93907159:C:T	chr4:93907159:C:T	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr4	94290458	94290459	chr4:94290459:T:C	rs8336	T	C	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr4	94536922	94536923	chr4:94536923:A:G	rs3805283	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.269796626925402	0.9049757394223954	TGATTGGCCATGCA
chr4	94538270	94538271	chr4:94538271:C:A	rs13110115	C	A	A	Sox1.mouse_HMG_4	7	1	+	10.118839938692327	10.092508693330506	TGAATTACAATGCA
chr4	95623268	95623269	chr4:95623269:G:A	rs2043657	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr4	95640372	95640373	chr4:95640373:A:G	rs78732903	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr4	95640376	95640377	chr4:95640377:G:C	rs13138930	G	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr4	95641711	95641712	chr4:95641712:C:T	rs13146335	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr4	96025316	96025317	chr4:96025317:A:T	rs66839424	A	T	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr4	96638519	96638520	chr4:96638520:C:A	rs10011978	C	A	T	Sox1.mouse_HMG_4	11	1	-	11.165118425269757	14.67927252767607	TGAATATACATGCA
chr4	96938464	96938465	chr4:96938465:G:C	rs13143940	G	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr4	96938482	96938483	chr4:96938483:G:A	rs34663790	G	A	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr4	97156669	97156670	chr4:97156670:C:T	rs4699546	C	T	C	Sox1.mouse_HMG_4	7	1	+	5.374332611462429	5.612245450647612	TGAACAGCTCTTCA
chr4	97396377	97396378	chr4:97396378:A:T	rs114932184	A	T	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr4	97441316	97441317	chr4:97441317:A:G	rs142667511	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr4	97662491	97662492	chr4:97662492:C:A	rs1911789	C	A	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr4	97900400	97900401	chr4:97900401:C:T	rs28539191	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr4	98556093	98556094	chr4:98556094:G:A	rs17027707	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr4	98565064	98565065	chr4:98565065:T:C	rs79669446	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr4	98642110	98642111	chr4:98642111:A:G	rs78766545	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	98891148	98891149	chr4:98891149:C:A	rs116301678	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr4	99458990	99458991	chr4:99458991:A:G	rs2119888	A	G	A	Sox1.mouse_HMG_4	2	1	+	7.687689531222517	0.7789347519072971	TGAATGAACAATCA
chr4	100113298	100113299	chr4:100113299:G:A	rs11729426	G	A	G	Sox1.mouse_HMG_4	13	1	-	6.1606568542082165	2.8759932888020128	TGAATTAGTATGCC
chr4	100515043	100515044	chr4:100515044:A:G	rs1318710	A	G	A	Sox1.mouse_HMG_4	3	1	-	7.676038754542602	10.77297290860556	TGATTGAACATTCA
chr4	101035817	101035818	chr4:101035818:A:G	rs150413488	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr4	101226573	101226574	chr4:101226574:C:T	rs713454	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr4	101694004	101694005	chr4:101694005:T:G	rs35556034	T	G	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	101850907	101850908	chr4:101850908:C:T	rs12501163	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr4	102390461	102390462	chr4:102390462:G:A	rs76454208	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr4	102390515	102390516	chr4:102390516:A:C	rs1117522	A	C	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	102586545	102586546	chr4:102586546:G:C	rs17032850	G	C	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr4	102637647	102637648	chr4:102637648:T:C	rs6533020	T	C	C	Sox1.mouse_HMG_4	10	1	+	7.593424409064162	0.7176552759398802	GGAACAAGTATTCA
chr4	102789772	102789773	chr4:102789773:G:A	rs223454	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr4	103371524	103371525	chr4:103371525:G:A	rs115605098	G	A	G	Sox1.mouse_HMG_4	12	1	-	5.259766235844199	-1.6489885434710214	TAAACAACTATTCA
chr4	104188519	104188520	chr4:104188520:C:T	rs17034352	C	T	C	Sox1.mouse_HMG_4	3	1	+	7.087042180689533	3.990108026626574	TGACTTACCATGCA
chr4	104595208	104595209	chr4:104595209:T:C	rs9998277	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr4	104879981	104879982	chr4:104879982:T:C	rs76618825	T	C	T	Sox1.mouse_HMG_4	13	1	-	4.96678652275907	-1.9159585932188992	TGAACATCTTTTCA
chr4	105606738	105606739	chr4:105606739:T:C	rs28536076	T	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr4	105875671	105875672	chr4:105875672:C:G	rs17036341	C	G	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr4	106245088	106245089	chr4:106245089:G:A	rs13121614	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr4	106389735	106389736	chr4:106389736:G:A	rs3108150	G	A	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr4	106662717	106662718	chr4:106662718:T:C	rs1403000	T	C	t	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr4	107031408	107031409	chr4:107031409:C:T	rs2068796	C	T	.	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr4	107288206	107288207	chr4:107288207:T:C	rs9684523	T	C	C	Sox1.mouse_HMG_4	7	1	+	7.076718476586832	6.838805637401649	TGAATTGTAAATCA
chr4	107295122	107295123	chr4:107295123:G:T	rs115121164	G	T	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	107467563	107467564	chr4:107467564:A:C	rs12501487	A	C	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr4	107871176	107871177	chr4:107871177:C:T	rs181718485	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr4	107908359	107908360	chr4:107908360:C:T	rs11724020	C	T	C	Sox1.mouse_HMG_4	0	1	-	4.844969548839603	1.5780657549608204	GTAATAGTCATTCA
chr4	107913535	107913536	chr4:107913536:A:G	rs138731297	A	G	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr4	108487451	108487452	chr4:108487452:G:A	rs1562975	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr4	109185424	109185425	chr4:109185425:G:A	rs17040061	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.995906304680914	-1.9128484746343057	TGGATAATCAGTCA
chr4	109263882	109263883	chr4:109263883:C:T	rs7686182	C	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr4	109649023	109649024	chr4:109649024:C:A	rs9996648	C	A	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr4	110275884	110275885	chr4:110275885:A:C	rs145239181	A	C	A	Sox1.mouse_HMG_4	1	1	+	7.145056119675089	7.145056119675089	TAAATAAGCATTCA
chr4	110392452	110392453	chr4:110392453:G:C	rs140586193	G	C	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr4	110412444	110412445	chr4:110412445:G:T	rs7667370	G	T	T	Sox1.mouse_HMG_4	1	1	+	6.660757948342866	-0.2479968309723528	TGAATTCCCATTCT
chr4	110414406	110414407	chr4:110414407:C:G	rs7691635	C	G	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	110998219	110998220	chr4:110998220:G:A	rs72895109	G	A	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr4	111886277	111886278	chr4:111886278:C:T	rs3850472	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	112124048	112124049	chr4:112124049:A:G	rs7682943	A	G	G	Sox1.mouse_HMG_4	2	1	-	4.608660250592427	4.608660250592427	TGTATAACCATGCA
chr4	112322299	112322300	chr4:112322300:C:T	rs12648308	C	T	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr4	112818890	112818891	chr4:112818891:T:C	rs76753897	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	112889855	112889856	chr4:112889856:C:G	chr4:112889856:C:G	C	G	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr4	114435595	114435596	chr4:114435596:C:G	rs80039502	C	G	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr4	114782974	114782975	chr4:114782975:C:T	rs76948715	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	114877088	114877089	chr4:114877089:C:T	rs77588761	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr4	114937174	114937175	chr4:114937175:C:A	rs1020219	C	A	C	Sox1.mouse_HMG_4	5	1	-	7.463612321846403	7.2655044509748645	TGACTGGTTATGCA
chr4	116240691	116240692	chr4:116240692:C:T	rs9999998	C	T	N	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr4	116362812	116362813	chr4:116362813:C:A	rs60623148	C	A	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr4	116439085	116439086	chr4:116439086:A:G	rs13110347	A	G	G	Sox1.mouse_HMG_4	3	1	+	4.816159924759932	-2.0712599850442643	TCAACTGACATTCA
chr4	118360452	118360453	chr4:118360453:G:T	rs72670213	G	T	G	Sox1.mouse_HMG_4	12	1	+	8.44230792161121	8.44230792161121	TGAATAGTCATTGA
chr4	118850325	118850326	chr4:118850326:G:A	rs17324912	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr4	118965023	118965024	chr4:118965024:C:T	rs1490510	C	T	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr4	118986442	118986443	chr4:118986443:T:A	rs972953	T	A	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr4	119212065	119212066	chr4:119212066:G:T	rs7441137	G	T	G	Sox1.mouse_HMG_4	1	1	+	10.559720539664282	3.650965760349064	GGAATACACATTCA
chr4	119237718	119237719	chr4:119237719:G:A	rs75525778	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr4	119506877	119506878	chr4:119506878:G:A	rs3775844	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr4	119517146	119517147	chr4:119517147:A:G	rs13103899	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr4	119666059	119666060	chr4:119666060:G:A	rs12499377	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr4	120242100	120242101	chr4:120242101:A:G	rs72670409	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr4	120304049	120304050	chr4:120304050:G:A	rs2715960	G	A	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr4	120652629	120652630	chr4:120652630:A:G	rs149030438	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr4	120812531	120812532	chr4:120812532:T:G	rs1912720	T	G	T	Sox1.mouse_HMG_4	0	1	+	5.204699361944253	1.6073609891726444	TGAACATTTTTTCA
chr4	121008065	121008066	chr4:121008066:C:T	rs4484323	C	T	T	Sox1.mouse_HMG_4	8	1	+	5.482378263598631	5.341346965271488	TGAACAGCCATTAA
chr4	121076623	121076624	chr4:121076624:T:C	rs6534250	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	121457576	121457577	chr4:121457577:A:G	rs4254800	A	G	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	122502160	122502161	chr4:122502161:T:C	rs6814718	T	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr4	122580525	122580526	chr4:122580526:T:G	rs62324163	T	G	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr4	122702737	122702738	chr4:122702738:T:G	rs1026157	T	G	T	Sox1.mouse_HMG_4	10	1	+	10.813976516234675	7.449155628731668	TGAATAGAAATGCA
chr4	122739499	122739500	chr4:122739500:C:T	rs76481473	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.316214242890392	4.175182944563253	TGAATGACCAGTGA
chr4	122830443	122830444	chr4:122830444:C:T	rs12509901	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	122896066	122896067	chr4:122896067:C:T	rs3827582	C	T	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr4	123178461	123178462	chr4:123178462:C:T	rs451205	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr4	123212581	123212582	chr4:123212582:G:A	rs55784465	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr4	123248698	123248699	chr4:123248699:G:A	rs302509	G	A	A	Sox1.mouse_HMG_4	12	1	-	7.441658057925021	0.5329032786098	AGAATTGATATTCA
chr4	123299520	123299521	chr4:123299521:G:A	rs13110588	G	A	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr4	123556305	123556306	chr4:123556306:A:G	rs4076849	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr4	123775631	123775632	chr4:123775632:C:G	rs56142420	C	G	C	Sox1.mouse_HMG_4	1	1	-	11.343699860733615	4.434945081418395	TGAACTTCCATTCA
chr4	124029925	124029926	chr4:124029926:T:C	rs35976398	T	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	124261200	124261201	chr4:124261201:T:C	rs568443406	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr4	124307432	124307433	chr4:124307433:G:A	rs4425395	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr4	124935309	124935310	chr4:124935310:A:G	rs6852823	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr4	125350848	125350849	chr4:125350849:A:G	rs9307560	A	G	A	Sox1.mouse_HMG_4	0	1	-	8.070018184928006	4.168468437753406	TGAATAGATACTCA
chr4	126136937	126136938	chr4:126136938:A:T	rs533990	A	T	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr4	126137786	126137787	chr4:126137787:G:C	rs489863	G	C	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr4	126970136	126970137	chr4:126970137:G:A	rs184311639	G	A	G	Sox1.mouse_HMG_4	5	1	+	8.476620958016392	8.918400180621731	TGAACGAACGTTCA
chr4	127018391	127018392	chr4:127018392:A:T	rs1510681	A	T	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr4	127174396	127174397	chr4:127174397:T:C	rs7694318	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr4	127893808	127893809	chr4:127893809:G:T	rs17012739	G	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr4	128333442	128333443	chr4:128333443:A:G	rs17337491	A	G	a	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	128357677	128357678	chr4:128357678:A:G	rs28404847	A	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr4	128383972	128383973	chr4:128383973:T:G	rs75224794	T	G	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr4	128931314	128931315	chr4:128931315:G:C	rs11934757	G	C	C	Sox1.mouse_HMG_4	0	1	-	6.751019442763578	7.055230817166567	CGAATTACTATTCC
chr4	129637101	129637102	chr4:129637102:G:T	rs6852416	G	T	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr4	129783621	129783622	chr4:129783622:G:A	rs62309760	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr4	130698487	130698488	chr4:130698488:G:T	rs28623474	G	T	T	Sox1.mouse_HMG_4	4	1	-	5.209351462112465	1.085286298441283	TGAACCAACATGCA
chr4	132888843	132888844	chr4:132888844:T:C	rs13109610	T	C	C	Sox1.mouse_HMG_4	13	1	-	6.678225344904265	-0.20451977107370478	GGAATTCTTAGTCA
chr4	133147124	133147125	chr4:133147125:T:C	rs62311810	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr4	133483620	133483621	chr4:133483621:T:C	rs9884347	T	C	T	Sox1.mouse_HMG_4	11	1	+	7.79684899372267	0.9164340795350998	TGAATATCCATTGA
chr4	133888245	133888246	chr4:133888246:A:G	rs72618092	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr4	134019202	134019203	chr4:134019203:A:G	rs17613932	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr4	134189553	134189554	chr4:134189554:A:G	rs7682708	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.770517748360849	4.405696860857842	TGTATATACATTCA
chr4	135840837	135840838	chr4:135840838:G:T	rs6822222	G	T	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	135966468	135966469	chr4:135966469:T:C	rs36084766	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	136554491	136554492	chr4:136554492:C:T	rs28758679	C	T	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr4	137655380	137655381	chr4:137655381:T:C	rs2434138	T	C	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr4	137743336	137743337	chr4:137743337:T:G	rs10011823	T	G	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr4	137861732	137861733	chr4:137861733:C:T	rs62330632	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	137910124	137910125	chr4:137910125:G:C	rs113320346	G	C	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr4	138062998	138062999	chr4:138062999:A:T	rs13101607	A	T	A	Sox1.mouse_HMG_4	3	1	+	11.58096643054928	4.693546520745083	TGAATAGATAGTCA
chr4	138063024	138063025	chr4:138063025:A:C	rs12639659	A	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr4	138538278	138538279	chr4:138538279:C:A	rs299159	C	A	A	Sox1.mouse_HMG_4	7	1	+	6.5150518561894994	6.488720610827678	TGAGTTCCTATTCA
chr4	138945290	138945291	chr4:138945291:C:T	rs6841351	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr4	138951958	138951959	chr4:138951959:T:G	rs28450119	T	G	T	Sox1.mouse_HMG_4	11	1	+	7.24830413312067	3.7341500307143605	TGAATACACATTAA
chr4	139254748	139254749	chr4:139254749:A:G	rs6837564	A	G	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr4	139603815	139603816	chr4:139603816:A:G	chr4:139603816:A:G	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr4	139603842	139603843	chr4:139603843:A:T	rs549228183	A	T	A	Sox1.mouse_HMG_4	9	1	+	4.465119945250747	-2.4106491878735343	TGAAAGGTCATTCC
chr4	139685270	139685271	chr4:139685271:G:A	rs7664138	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr4	139685292	139685293	chr4:139685293:G:T	rs7664313	G	T	G	Sox1.mouse_HMG_4	7	1	+	6.307391818237422	7.523062890746253	TGACTGAGCATGCA
chr4	139783819	139783820	chr4:139783820:G:A	rs4073208	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr4	139888555	139888556	chr4:139888556:C:G	rs3775241	C	G	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr4	140308655	140308656	chr4:140308656:T:C	chr4:140308656:T:C	T	C	T	Sox1.mouse_HMG_4	13	1	-	5.648403329461141	-1.2343417865168282	TGAATGTGAGTGCA
chr4	140308671	140308672	chr4:140308672:G:C	rs13101760	G	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr4	140740194	140740195	chr4:140740195:T:C	rs72720335	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	141122224	141122225	chr4:141122225:C:T	rs4956517	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr4	141409889	141409890	chr4:141409890:G:T	rs10519598	G	T	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr4	141789594	141789595	chr4:141789595:A:G	rs1987968	A	G	-	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr4	141812867	141812868	chr4:141812868:T:A	rs75656254	T	A	.	Sox1.mouse_HMG_4	7	1	-	9.884216812291138	10.148460896838143	TGAATACAAATGCA
chr4	143207922	143207923	chr4:143207923:C:A	rs6820538	C	A	C	Sox1.mouse_HMG_4	6	1	+	6.764615472054598	7.612794446570844	TGAATTCTTCTTCA
chr4	143394765	143394766	chr4:143394766:A:G	rs11937252	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	143512931	143512932	chr4:143512932:T:A	chr4:143512932:T:A	T	A	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr4	143645287	143645288	chr4:143645288:T:C	rs1391186	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	143782194	143782195	chr4:143782195:T:C	rs13140028	T	C	.	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	144124490	144124491	chr4:144124491:T:C	rs150283795	T	C	.	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr4	144171964	144171965	chr4:144171965:T:C	rs34288808	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.711575849530741	1.346754962027734	TGATTAGCCATGCA
chr4	144179104	144179105	chr4:144179105:G:A	rs10213243	G	A	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr4	145061410	145061411	chr4:145061411:A:G	rs6823268	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr4	145061433	145061434	chr4:145061434:T:C	rs76949030	T	C	T	Sox1.mouse_HMG_4	7	1	-	7.673999062698539	6.722572074736711	AGAATATATATTCA
chr4	145482796	145482797	chr4:145482797:G:T	rs375395597	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr4	145490037	145490038	chr4:145490038:A:T	rs768139	A	T	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr4	145490038	145490039	chr4:145490039:A:C	rs959641	A	C	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr4	145847921	145847922	chr4:145847922:G:A	rs1027841	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr4	146244134	146244135	chr4:146244135:C:T	rs72727984	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	146299935	146299936	chr4:146299936:G:C	rs11735261	G	C	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr4	146299950	146299951	chr4:146299951:T:C	rs2101345	T	C	C	Sox1.mouse_HMG_4	2	1	-	8.198673032880917	1.289918253565696	TGACCTGTCATTCA
chr4	146329246	146329247	chr4:146329247:T:C	rs77774973	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr4	147409361	147409362	chr4:147409362:T:G	rs1429111	T	G	T	Sox1.mouse_HMG_4	12	1	-	4.24846175741438	11.1572165367296	TGAATGGCCATGAA
chr4	147482476	147482477	chr4:147482477:G:C	rs10305851	G	C	C	Sox1.mouse_HMG_4	10	1	-	4.833997334768897	8.34494558039017	TGAATCATCACTCA
chr4	147530681	147530682	chr4:147530682:G:A	rs2048894	G	A	G	Sox1.mouse_HMG_4	10	1	+	4.7943350169505505	1.283386771329276	TGAAGAAACAGTCA
chr4	147862676	147862677	chr4:147862677:A:T	rs79324443	A	T	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	150598079	150598080	chr4:150598080:T:C	rs4435730	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	151094551	151094552	chr4:151094552:T:C	rs11733964	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	151541330	151541331	chr4:151541331:A:C	rs75570235	A	C	A	Sox1.mouse_HMG_4	8	1	+	6.631556916701372	7.3902449144398155	GGAATGTTAATGCA
chr4	151604508	151604509	chr4:151604509:C:T	rs875668	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr4	151690313	151690314	chr4:151690314:T:G	rs114164891	T	G	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr4	151746018	151746019	chr4:151746019:T:C	rs28710456	T	C	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr4	151968787	151968788	chr4:151968788:A:G	rs361146	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr4	152102249	152102250	chr4:152102250:C:A	rs6535838	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr4	152114188	152114189	chr4:152114189:G:C	rs72734260	G	C	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr4	152298078	152298079	chr4:152298079:T:G	rs4416456	T	G	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr4	152917741	152917742	chr4:152917742:C:A	rs75236376	C	A	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr4	152984547	152984548	chr4:152984548:A:G	rs6822820	A	G	a	Sox1.mouse_HMG_4	5	1	+	4.2580681663459545	3.8162889437406156	TGACCAGGCAGTCA
chr4	152984557	152984558	chr4:152984558:A:G	rs6822827	A	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr4	153016723	153016724	chr4:153016724:G:A	rs72725661	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.8726611241908	7.394874739430976	TGAATTCTCATTTA
chr4	153166344	153166345	chr4:153166345:A:G	rs75137350	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr4	153235057	153235058	chr4:153235058:G:C	rs75088219	G	C	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr4	153485641	153485642	chr4:153485642:A:G	rs9997743	A	G	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr4	154004570	154004571	chr4:154004571:C:T	rs34333259	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr4	154302727	154302728	chr4:154302728:G:T	rs4622978	G	T	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	154400959	154400960	chr4:154400960:C:T	rs6828604	C	T	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr4	154490859	154490860	chr4:154490860:G:A	rs17031725	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	154804066	154804067	chr4:154804067:C:T	rs12512208	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr4	154852719	154852720	chr4:154852720:G:A	rs4696607	G	A	g	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr4	154942620	154942621	chr4:154942621:A:G	rs6812614	A	G	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	155718021	155718022	chr4:155718022:G:A	rs3796585	G	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr4	155758718	155758719	chr4:155758719:C:A	rs568191098	C	A	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	155758749	155758750	chr4:155758750:T:A	rs1038100205	T	A	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	155807084	155807085	chr4:155807085:T:G	rs143925281	T	G	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr4	156136480	156136481	chr4:156136481:C:T	rs12512018	C	T	C	Sox1.mouse_HMG_4	8	1	+	5.043335892544476	4.902304594217336	AGAACTATCATTCA
chr4	156138403	156138404	chr4:156138404:A:C	rs12506447	A	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr4	156139507	156139508	chr4:156139508:A:C	rs6536147	A	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr4	156294117	156294118	chr4:156294118:A:G	rs192960748	A	G	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	156523548	156523549	chr4:156523549:C:T	rs11100060	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr4	156735111	156735112	chr4:156735112:A:G	rs2194869	A	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr4	156751655	156751656	chr4:156751656:C:T	rs141823102	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr4	156861268	156861269	chr4:156861269:G:T	rs1471089326	G	T	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr4	157939487	157939488	chr4:157939488:T:C	rs10028808	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr4	158134139	158134140	chr4:158134140:A:G	rs7692254	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr4	158493105	158493106	chr4:158493106:T:G	rs6536340	T	G	G	Sox1.mouse_HMG_4	4	1	+	6.608042783249918	-0.23803919924866368	TGACTGGCAATGCA
chr4	158493112	158493113	chr4:158493113:G:A	rs6536341	G	A	G	Sox1.mouse_HMG_4	11	1	+	6.608042783249918	3.241781971468659	TGACTGGCAATGCA
chr4	158856962	158856963	chr4:158856963:A:G	rs143892299	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr4	159003142	159003143	chr4:159003143:G:A	rs17223240	G	A	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	159033091	159033092	chr4:159033092:A:G	rs601196	A	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	159070137	159070138	chr4:159070138:T:G	rs530284409	T	G	T	Sox1.mouse_HMG_4	0	1	+	10.793600488265318	7.196262115493708	TGAATTACCATTCC
chr4	159157096	159157097	chr4:159157097:G:T	rs59285486	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr4	159190860	159190861	chr4:159190861:A:C	rs115622914	A	C	A	Sox1.mouse_HMG_4	13	1	+	7.395219578926922	3.797138028355157	GGAACTGCAATTCA
chr4	159220032	159220033	chr4:159220033:G:A	rs11730098	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr4	159294062	159294063	chr4:159294063:T:C	rs4547756	T	C	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr4	159369653	159369654	chr4:159369654:C:T	rs13128547	C	T	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr4	160551668	160551669	chr4:160551669:A:G	rs17355592	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr4	160573969	160573970	chr4:160573970:G:A	rs36061820	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	161270747	161270748	chr4:161270748:G:A	rs17393240	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr4	162406744	162406745	chr4:162406745:A:G	rs66936767	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr4	162555599	162555600	chr4:162555600:C:T	rs2014019	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.313638849499632	0.40488407018441097	GGAACTACAATTCA
chr4	162945147	162945148	chr4:162945148:A:G	rs149231692	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr4	163578944	163578945	chr4:163578945:T:C	rs10155430	T	C	t	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr4	164297482	164297483	chr4:164297483:A:G	rs7686478	A	G	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr4	164442291	164442292	chr4:164442292:C:G	rs12649964	C	G	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr4	164808319	164808320	chr4:164808320:G:A	rs28622475	G	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr4	165255968	165255969	chr4:165255969:C:T	rs72699598	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	165301854	165301855	chr4:165301855:C:T	rs56229427	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr4	165301868	165301869	chr4:165301869:G:A	rs11723812	G	A	A	Sox1.mouse_HMG_4	8	1	-	6.641402685834733	6.500371387507594	TGAATTCACTTTCA
chr4	165413882	165413883	chr4:165413883:G:A	rs13111798	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr4	165503581	165503582	chr4:165503582:C:G	rs76037262	C	G	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	165767726	165767727	chr4:165767727:T:C	rs355172	T	C	C	Sox1.mouse_HMG_4	7	1	-	4.816159924759932	3.864732936798103	TCAACTGACATTCA
chr4	165915786	165915787	chr4:165915787:C:G	rs954832814	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr4	167290901	167290902	chr4:167290902:T:G	rs115972249	T	G	T	Sox1.mouse_HMG_4	8	1	+	7.399856784468187	1.4788951769978087	TGAATACTTATACA
chr4	167402224	167402225	chr4:167402225:A:G	rs1962499	A	G	G	Sox1.mouse_HMG_4	13	1	+	8.034761832907853	1.152016716929884	TTAATATTCATTCA
chr4	167948023	167948024	chr4:167948024:T:A	rs72691128	T	A	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr4	168075016	168075017	chr4:168075017:A:G	rs7694025	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr4	168111116	168111117	chr4:168111117:A:G	rs4692853	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr4	168202382	168202383	chr4:168202383:C:A	rs644911	C	A	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr4	168317939	168317940	chr4:168317940:T:C	rs59144868	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr4	168570218	168570219	chr4:168570219:T:C	rs10004025	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr4	168598396	168598397	chr4:168598397:C:T	rs540984628	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr4	168693911	168693912	chr4:168693912:C:T	rs574406501	C	T	C	Sox1.mouse_HMG_4	10	1	+	4.199866674178027	11.075635807302309	TGAATGACCACGCA
chr4	168693912	168693913	chr4:168693913:G:T	rs78509129	G	T	T	Sox1.mouse_HMG_4	11	1	+	4.199866674178027	7.714020776584338	TGAATGACCACGCA
chr4	169620499	169620500	chr4:169620500:A:T	chr4:169620500:A:T	A	T	A	Sox1.mouse_HMG_4	3	1	+	8.584532932805503	1.6971130230013067	TGAACGGCCGTTCA
chr4	169841445	169841446	chr4:169841446:G:T	rs72988882	G	T	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr4	169897958	169897959	chr4:169897959:G:A	rs4235027	G	A	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr4	170003585	170003586	chr4:170003586:T:C	rs7694808	T	C	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	170038910	170038911	chr4:170038911:C:A	rs2727525	C	A	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr4	170274806	170274807	chr4:170274807:C:T	rs17055541	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	170428498	170428499	chr4:170428499:C:T	rs2698221	C	T	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr4	170523616	170523617	chr4:170523617:C:G	rs78859343	C	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr4	171747422	171747423	chr4:171747423:T:C	rs76386676	T	C	T	Sox1.mouse_HMG_4	2	1	+	8.096483107636917	8.096483107636917	TGTATAAACATTCA
chr4	171813973	171813974	chr4:171813974:G:A	rs551987318	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr4	173236980	173236981	chr4:173236981:A:G	rs13112928	A	G	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	173273301	173273302	chr4:173273302:C:T	rs1383628	C	T	C	Sox1.mouse_HMG_4	12	1	+	6.960599067061587	0.0518442877463654	TGAACTTAAATTCC
chr4	173332026	173332027	chr4:173332027:T:C	rs73005353	T	C	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	173369200	173369201	chr4:173369201:G:T	rs7696310	G	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	173685965	173685966	chr4:173685966:T:C	rs4476576	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr4	173930883	173930884	chr4:173930884:T:G	rs13107942	T	G	T	Sox1.mouse_HMG_4	2	1	-	6.8726611241908	-0.036093655124420865	TGAATTCTCATTAA
chr4	174398773	174398774	chr4:174398774:A:C	rs35263478	A	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr4	175260507	175260508	chr4:175260508:C:T	rs13146658	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr4	175827783	175827784	chr4:175827784:G:A	rs7679990	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr4	176134523	176134524	chr4:176134524:G:A	rs55795515	G	A	G	Sox1.mouse_HMG_4	0	1	+	7.593424409064162	4.3265206151853794	GGAACAAGTATTCA
chr4	176252465	176252466	chr4:176252466:G:A	rs74768987	G	A	G	Sox1.mouse_HMG_4	1	1	+	8.034761832907854	1.1260070535926328	TGAATATTCATTAA
chr4	176313794	176313795	chr4:176313795:T:C	rs723819	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr4	176451601	176451602	chr4:176451602:G:A	rs2167096	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr4	176837824	176837825	chr4:176837825:A:C	rs4618263	A	C	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr4	177119243	177119244	chr4:177119244:A:G	rs116550698	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr4	177196471	177196472	chr4:177196472:G:A	rs13137214	G	A	G	Sox1.mouse_HMG_4	8	1	-	10.465369671971247	10.324338373644105	TGAATGCTCATGCA
chr4	177548316	177548317	chr4:177548317:T:C	rs12512186	T	C	C	Sox1.mouse_HMG_4	0	1	+	10.573106082424468	6.671556335249868	TGAACAAGAATTCA
chr4	177799578	177799579	chr4:177799579:T:C	rs72715652	T	C	t	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	178182146	178182147	chr4:178182147:G:A	rs13145748	G	A	G	Sox1.mouse_HMG_4	12	1	-	6.302022937589268	-0.6067318417259531	TGACTTAAAATGCA
chr4	178370895	178370896	chr4:178370896:C:T	rs2136799	C	T	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr4	178789330	178789331	chr4:178789331:A:G	rs7676302	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr4	179123193	179123194	chr4:179123194:T:C	rs2028490	T	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr4	180664938	180664939	chr4:180664939:A:G	rs1448117849	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr4	180933824	180933825	chr4:180933825:A:G	rs12152565	A	G	A	Sox1.mouse_HMG_4	8	1	+	6.757067686367737	1.4537627783086626	GGAATTGTAATTCC
chr4	180933838	180933839	chr4:180933839:C:T	chr4:180933839:C:T	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	181147729	181147730	chr4:181147730:A:G	rs10520465	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr4	181421008	181421009	chr4:181421009:C:T	rs6552501	C	T	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr4	181761073	181761074	chr4:181761074:T:C	rs4241738	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr4	181771014	181771015	chr4:181771015:T:G	rs72702440	T	G	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr4	182143843	182143844	chr4:182143844:C:T	rs141791355	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	182518411	182518412	chr4:182518412:A:G	rs62337233	A	G	A	Sox1.mouse_HMG_4	2	1	+	6.377644280367038	-0.5311104989481825	TGACTCTGCATTCA
chr4	182536813	182536814	chr4:182536814:C:G	rs6828638	C	G	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr4	183099033	183099034	chr4:183099034:A:G	chr4:183099034:A:G	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr4	183373356	183373357	chr4:183373357:C:T	rs6834774	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr4	183540906	183540907	chr4:183540907:G:T	rs139586007	G	T	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr4	183586614	183586615	chr4:183586615:A:C	rs61107054	A	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr4	183969239	183969240	chr4:183969240:G:T	rs11947559	G	T	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr4	184153532	184153533	chr4:184153533:A:C	rs13147555	A	C	A	Sox1.mouse_HMG_4	11	1	-	8.385505403638726	4.871351301232415	TGAACATCCATTCC
chr4	184443768	184443769	chr4:184443769:G:A	rs184840226	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr4	184783003	184783004	chr4:184783004:C:T	rs775875930	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr4	185009114	185009115	chr4:185009115:T:C	rs16813	T	C	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	185019934	185019935	chr4:185019935:G:T	rs72706953	G	T	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr4	185597910	185597911	chr4:185597911:C:T	rs9991085	C	T	c	Sox1.mouse_HMG_4	8	1	+	8.12465935610481	7.983628057777673	GGAATAGACAGTCA
chr4	185693798	185693799	chr4:185693799:C:T	rs79870297	C	T	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr4	185722492	185722493	chr4:185722493:C:T	rs4862568	C	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr4	185756098	185756099	chr4:185756099:G:A	rs4543173	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr4	185849448	185849449	chr4:185849449:G:A	rs7657921	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr4	185914572	185914573	chr4:185914573:C:T	rs6814522	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr4	185929274	185929275	chr4:185929275:C:T	rs10013254	C	T	t	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr4	186029474	186029475	chr4:186029475:G:A	rs1401572	G	A	G	Sox1.mouse_HMG_4	12	1	-	5.193048585264337	-1.715706194050884	TGATCATTTATTCA
chr4	186104212	186104213	chr4:186104213:G:A	rs62348015	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr4	186348027	186348028	chr4:186348028:A:T	rs1320542195	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr4	186426799	186426800	chr4:186426800:T:C	rs13140715	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr4	186614610	186614611	chr4:186614611:T:C	rs2584348	T	C	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr4	186922740	186922741	chr4:186922741:G:A	rs10018338	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr4	186922787	186922788	chr4:186922788:G:C	rs10018354	G	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr4	187469782	187469783	chr4:187469783:G:C	rs13112861	G	C	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr4	188145846	188145847	chr4:188145847:A:G	rs6858786	A	G	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr4	188145869	188145870	chr4:188145870:C:G	rs62351466	C	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr4	188160111	188160112	chr4:188160112:T:C	rs116075414	T	C	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr4	188819345	188819346	chr4:188819346:T:C	rs139204328	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr4	188826340	188826341	chr4:188826341:A:C	rs62341763	A	C	A	Sox1.mouse_HMG_4	6	1	+	7.955451809309776	7.107272834793531	TGAATAAATATTGA
chr4	188971405	188971406	chr4:188971406:C:T	rs11727358	C	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr4	189567292	189567293	chr4:189567293:G:C	rs113660850	G	C	g	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr4	189609967	189609968	chr4:189609968:G:T	rs9790544	G	T	G	Sox1.mouse_HMG_4	1	1	+	6.731629825863661	-0.17712495345156154	TGAATTCTTATTGA
chr5	379624	379625	chr5:379625:C:T	rs558705447	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	464528	464529	chr5:464529:A:G	rs187746319	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	471362	471363	chr5:471363:C:T	rs1053247	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	471378	471379	chr5:471379:T:C	rs890973	T	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	1039466	1039467	chr5:1039467:G:A	rs6886075	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr5	1160614	1160615	chr5:1160615:C:G	rs73031190	C	G	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	1165390	1165391	chr5:1165391:T:C	rs10072152	T	C	t	Sox1.mouse_HMG_4	10	1	+	8.87697894050754	2.0012098073832583	TGAACAGCCATGCA
chr5	1255506	1255507	chr5:1255507:T:C	rs35083412	T	C	T	Sox1.mouse_HMG_4	0	1	+	10.201125587424242	6.299575840249643	TGAATGCACATGCA
chr5	1434190	1434191	chr5:1434191:C:T	rs458609	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	1644278	1644279	chr5:1644279:C:T	rs7705207	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr5	1697758	1697759	chr5:1697759:C:T	rs13158617	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	1708867	1708868	chr5:1708868:G:A	rs12523324	G	A	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	1824238	1824239	chr5:1824239:G:A	rs62338062	G	A	G	Sox1.mouse_HMG_4	13	1	-	7.708468201061137	4.423804635654934	TGAATGGCCAGTCC
chr5	1956769	1956770	chr5:1956770:A:G	rs13170991	A	G	g	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr5	1979185	1979186	chr5:1979186:T:C	rs11748195	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	1992458	1992459	chr5:1992459:C:T	rs6860916	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr5	2163657	2163658	chr5:2163658:C:T	rs4866714	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	2163659	2163660	chr5:2163660:G:T	rs11133931	G	T	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr5	2214997	2214998	chr5:2214998:T:A	rs35244296	T	A	T	Sox1.mouse_HMG_4	2	1	-	7.482048636142404	0.5732938568271841	TGAAAAGAAATTCA
chr5	2276195	2276196	chr5:2276196:G:A	rs7702894	G	A	a	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	2282233	2282234	chr5:2282234:T:C	rs635969	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.1394412415298785	0.7746203540268712	TGATTTACCAGTCA
chr5	2335690	2335691	chr5:2335691:G:A	rs62330976	G	A	G	Sox1.mouse_HMG_4	9	1	+	8.618766066707485	11.983586954210491	TGAACATCCGTTCA
chr5	2335707	2335708	chr5:2335708:C:T	rs62330977	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr5	2368941	2368942	chr5:2368942:T:C	rs78785663	T	C	T	Sox1.mouse_HMG_4	5	1	-	3.7604812760761828	3.318702053470844	TGCATACCCATGCA
chr5	2369222	2369223	chr5:2369223:G:A	rs10035290	G	A	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	2369309	2369310	chr5:2369310:G:A	rs76065681	G	A	G	Sox1.mouse_HMG_4	7	1	+	10.621237526011287	11.572664513973116	TGAATAGGCATGCA
chr5	2380511	2380512	chr5:2380512:C:T	rs10474746	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.642481597196545	0.7337268178813241	TGAAATATTATTCA
chr5	2403970	2403971	chr5:2403971:A:G	rs10052956	A	G	a	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	2559133	2559134	chr5:2559134:A:G	rs7727566	A	G	G	Sox1.mouse_HMG_4	9	1	+	4.170103255903879	0.8052823684008723	TGAAGGGCTATGCA
chr5	2733138	2733139	chr5:2733139:A:G	rs9764669	A	G	G	Sox1.mouse_HMG_4	0	1	-	4.834577819072223	0.9330280718976238	TGAGTAGACAGTCA
chr5	2803293	2803294	chr5:2803294:G:T	rs79338866	G	T	G	Sox1.mouse_HMG_4	7	1	-	8.267067879242669	8.240736633880847	TGAAAAGCCATTCA
chr5	3129512	3129513	chr5:3129513:T:C	rs750779	T	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr5	3345728	3345729	chr5:3345729:C:T	rs12515754	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr5	3352148	3352149	chr5:3352149:G:T	rs78662797	G	T	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	3415777	3415778	chr5:3415778:A:G	rs429087	A	G	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	3456073	3456074	chr5:3456074:G:C	rs32731	G	C	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr5	3604616	3604617	chr5:3604617:G:A	rs113043509	G	A	A	Sox1.mouse_HMG_4	0	1	+	9.778802147860267	6.511898353981485	GGAATTCATATTCA
chr5	3604637	3604638	chr5:3604638:G:T	rs6866330	G	T	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	3949566	3949567	chr5:3949567:C:T	rs639157	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	4013878	4013879	chr5:4013879:A:G	rs557286	A	G	G	Sox1.mouse_HMG_4	9	1	+	5.822688755095744	2.457867867592735	TGAATGGGAATGCC
chr5	4017785	4017786	chr5:4017786:A:C	rs491368	A	C	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	4018857	4018858	chr5:4018858:T:C	rs903085	T	C	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	4063794	4063795	chr5:4063795:C:T	rs73734115	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr5	4094836	4094837	chr5:4094837:G:A	rs10069410	G	A	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr5	4361998	4361999	chr5:4361999:C:T	chr5:4361999:C:T	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr5	4640156	4640157	chr5:4640157:T:G	rs76126935	T	G	T	Sox1.mouse_HMG_4	2	1	-	4.936455735781064	-1.972299043534156	TGAATAGTTAGTTA
chr5	4883492	4883493	chr5:4883493:G:A	rs747592	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr5	4906970	4906971	chr5:4906971:C:A	rs6894984	C	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	4921199	4921200	chr5:4921200:T:A	rs58602316	T	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr5	4990038	4990039	chr5:4990039:T:A	rs76742648	T	A	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr5	5244843	5244844	chr5:5244844:G:A	rs72724173	G	A	.	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr5	5244851	5244852	chr5:5244852:T:C	rs2964428	T	C	.	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	5278667	5278668	chr5:5278668:C:A	rs71596748	C	A	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	5318770	5318771	chr5:5318771:C:T	rs111859044	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	5381432	5381433	chr5:5381433:G:A	rs143379989	G	A	G	Sox1.mouse_HMG_4	0	1	+	6.384012059762805	3.1171082658840215	GGAATTGGCATGCA
chr5	6096090	6096091	chr5:6096091:C:T	chr5:6096091:C:T	C	T	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	6263802	6263803	chr5:6263803:A:G	rs1073241	A	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr5	6340309	6340310	chr5:6340310:T:A	rs13186672	T	A	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr5	6360810	6360811	chr5:6360811:G:A	rs271425	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr5	6518504	6518505	chr5:6518505:C:T	rs487740	C	T	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	6635685	6635686	chr5:6635686:T:G	rs500182	T	G	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr5	6635691	6635692	chr5:6635692:C:G	rs1560149	C	G	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	6847983	6847984	chr5:6847984:C:G	rs888964705	C	G	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	6962093	6962094	chr5:6962094:T:C	rs72717115	T	C	T	Sox1.mouse_HMG_4	4	1	+	10.38218540160595	7.66016858277855	GGAATGCTCATTCA
chr5	7244988	7244989	chr5:7244989:G:A	rs4454035	G	A	A	Sox1.mouse_HMG_4	4	1	-	7.034374867214417	9.756391686041818	TGAACTGGTATTCC
chr5	7518990	7518991	chr5:7518991:G:A	rs17826786	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	7704566	7704567	chr5:7704567:A:C	rs6888687	A	C	C	Sox1.mouse_HMG_4	2	1	+	11.165118425269757	4.256363645954538	TGAATATACATGCA
chr5	7991209	7991210	chr5:7991210:G:A	rs66610907	G	A	G	Sox1.mouse_HMG_4	7	1	-	4.387503732958041	4.625416572143223	TGAACCCCCATGCA
chr5	7991233	7991234	chr5:7991234:C:T	rs13189984	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	8396564	8396565	chr5:8396565:G:A	rs72733814	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	8634009	8634010	chr5:8634010:C:T	rs4702565	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr5	8687106	8687107	chr5:8687107:T:C	rs200046	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr5	8701807	8701808	chr5:8701808:T:C	rs199997	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	8810913	8810914	chr5:8810914:T:C	rs3105426	T	C	T	Sox1.mouse_HMG_4	10	1	+	8.122814352998738	1.247045219874458	TGAATAACCATTGA
chr5	9014042	9014043	chr5:9014043:G:C	rs1379571	G	C	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	9422254	9422255	chr5:9422255:T:C	rs447541	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr5	9774516	9774517	chr5:9774517:T:C	rs2905188	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr5	9835386	9835387	chr5:9835387:G:A	rs10043998	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	9835389	9835390	chr5:9835390:C:T	rs7724273	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr5	9835390	9835391	chr5:9835391:T:C	rs10042053	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr5	10009958	10009959	chr5:10009959:T:C	rs3111097	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	10351953	10351954	chr5:10351954:G:A	chr5:10351954:G:A	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr5	10442869	10442870	chr5:10442870:G:T	rs16884691	G	T	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr5	10504192	10504193	chr5:10504193:C:T	rs571864014	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr5	10635231	10635232	chr5:10635232:G:A	rs74740120	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr5	10635254	10635255	chr5:10635255:T:C	rs61190375	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	10684829	10684830	chr5:10684830:T:C	rs3822411	T	C	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	10838173	10838174	chr5:10838174:A:G	rs62338975	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.456024947038629	-2.4527298322765905	TGAACAAGCCTTCA
chr5	10885361	10885362	chr5:10885362:T:C	rs4702749	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	11062831	11062832	chr5:11062832:C:T	rs76025445	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr5	11522926	11522927	chr5:11522927:A:G	rs79057073	A	G	A	Sox1.mouse_HMG_4	1	1	-	4.961603105045369	4.961603105045369	TTAACAGTAATTCA
chr5	11853512	11853513	chr5:11853513:C:A	rs13173868	C	A	C	Sox1.mouse_HMG_4	5	1	+	7.022379384190478	10.58209488779644	TGAATCTCAAGTCA
chr5	11922442	11922443	chr5:11922443:A:T	rs1458482	A	T	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr5	13190211	13190212	chr5:13190212:T:C	rs754449	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.053282800327687	1.3312659815002883	TGAATGGCTGTGCC
chr5	13319823	13319824	chr5:13319824:G:A	rs1596825	G	A	A	Sox1.mouse_HMG_4	8	1	-	4.579982286492443	4.438950988165301	TGAATAGACATTTC
chr5	13699117	13699118	chr5:13699118:A:G	rs7712372	A	G	G	Sox1.mouse_HMG_4	13	1	+	4.199866674178027	-2.682878441799942	TGAATGACCAAGCA
chr5	13745664	13745665	chr5:13745665:C:A	rs1502044	C	A	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr5	14190260	14190261	chr5:14190261:A:G	rs7724459	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	14190271	14190272	chr5:14190272:C:T	rs114215426	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr5	14190275	14190276	chr5:14190276:A:C	chr5:14190276:A:C	A	C	A	Sox1.mouse_HMG_4	10	1	-	4.053282800327687	0.6884619128246801	TGAATGGCTGTGCC
chr5	14205410	14205411	chr5:14205411:A:T	rs26281	A	T	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	14399633	14399634	chr5:14399634:G:A	rs147538364	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	14582485	14582486	chr5:14582486:C:G	rs192928145	C	G	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr5	14767982	14767983	chr5:14767983:C:G	rs6885132	C	G	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr5	15021566	15021567	chr5:15021567:A:G	chr5:15021567:A:G	A	G	A	Sox1.mouse_HMG_4	4	1	-	7.027031560306902	4.305014741479503	TGAATCTTAATTCC
chr5	15021590	15021591	chr5:15021591:G:A	rs114980449	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	15283037	15283038	chr5:15283038:G:T	rs2577976	G	T	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr5	15596198	15596199	chr5:15596199:C:T	rs9312897	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr5	15769036	15769037	chr5:15769037:T:C	rs952161	T	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	15915051	15915052	chr5:15915052:T:G	rs10042283	T	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr5	16278448	16278449	chr5:16278449:C:T	rs2617306	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr5	16278449	16278450	chr5:16278450:G:A	rs2582679	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	16783883	16783884	chr5:16783884:A:G	rs11133859	A	G	g	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	16783909	16783910	chr5:16783910:G:A	rs25904	G	A	a	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr5	17113588	17113589	chr5:17113589:C:T	rs2624420	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	17260800	17260801	chr5:17260801:C:T	rs6865825	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr5	17282715	17282716	chr5:17282716:G:A	rs16869675	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr5	17373969	17373970	chr5:17373970:A:T	rs298540	A	T	T	Sox1.mouse_HMG_4	5	1	-	6.697908016421597	7.337795109898474	TAAATTAAAATTCA
chr5	17382593	17382594	chr5:17382594:G:C	rs7728024	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr5	17441636	17441637	chr5:17441637:C:A	rs2457728	C	A	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr5	17441647	17441648	chr5:17441648:G:A	rs3733747	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr5	17865481	17865482	chr5:17865482:G:C	rs72744985	G	C	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	18267839	18267840	chr5:18267840:G:T	rs13179760	G	T	G	Sox1.mouse_HMG_4	1	1	+	6.725164606594252	-0.18359017272096745	GGAATATAAATTCC
chr5	18282100	18282101	chr5:18282101:T:A	rs139833623	T	A	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	18405964	18405965	chr5:18405965:G:T	rs77429841	G	T	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr5	18660940	18660941	chr5:18660941:T:C	rs10472652	T	C	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr5	18660945	18660946	chr5:18660946:A:G	rs10472138	A	G	a	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	18883538	18883539	chr5:18883539:A:G	rs78161949	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	19609728	19609729	chr5:19609729:A:G	rs189492	A	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr5	20033153	20033154	chr5:20033154:A:C	chr5:20033154:A:C	A	C	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	21319583	21319584	chr5:21319584:C:T	rs10941887	C	T	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr5	21630683	21630684	chr5:21630684:A:G	rs76714080	A	G	a	Sox1.mouse_HMG_4	3	1	+	7.397145445260191	0.5097255354559913	TAAATTGATATTCA
chr5	22004093	22004094	chr5:22004094:A:G	rs6894722	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	22501551	22501552	chr5:22501552:C:T	rs72744896	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	22673714	22673715	chr5:22673715:A:G	rs992766	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr5	23072649	23072650	chr5:23072650:T:C	rs1836564	T	C	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr5	23096422	23096423	chr5:23096423:C:T	rs67908488	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	23680950	23680951	chr5:23680951:G:A	rs10057450	G	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	24146416	24146417	chr5:24146417:G:A	rs6870311	G	A	G	Sox1.mouse_HMG_4	12	1	-	6.416455269810359	-0.49229950950486123	AGAATTTAAATTCA
chr5	24486695	24486696	chr5:24486696:C:T	rs1169561	C	T	T	Sox1.mouse_HMG_4	13	1	+	8.168465210295961	4.883801644889758	TGAACTATTATTCC
chr5	24645147	24645148	chr5:24645148:A:T	rs79959666	A	T	-	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr5	24645153	24645154	chr5:24645154:A:C	rs145274660	A	C	a	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	25388148	25388149	chr5:25388149:C:T	rs74722751	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr5	25536769	25536770	chr5:25536770:G:A	rs115056406	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr5	26059641	26059642	chr5:26059642:A:C	chr5:26059642:A:C	A	C	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr5	26229886	26229887	chr5:26229887:A:C	rs10035131	A	C	C	Sox1.mouse_HMG_4	0	1	-	7.5711623897782685	3.9738240170066605	TGAATTGACTTTCA
chr5	26411593	26411594	chr5:26411594:T:C	rs11953562	T	C	t	Sox1.mouse_HMG_4	3	1	-	7.313638849499632	0.4262189396954341	GGAACTACAATTCA
chr5	26838825	26838826	chr5:26838826:A:G	rs12519694	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	27341782	27341783	chr5:27341783:G:A	rs116299573	G	A	G	Sox1.mouse_HMG_4	1	1	+	8.766720246980261	1.8579654676650428	TGAACAGACATTCC
chr5	27907605	27907606	chr5:27907606:C:T	rs1991500	C	T	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr5	28344949	28344950	chr5:28344950:A:T	chr5:28344950:A:T	A	T	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr5	28397625	28397626	chr5:28397626:A:T	rs4443428	A	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr5	28397664	28397665	chr5:28397665:C:T	rs4282327	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr5	28671050	28671051	chr5:28671051:T:C	rs72756470	T	C	T	Sox1.mouse_HMG_4	7	1	+	7.608148665507556	7.370235826322372	TGAATTATTATCCA
chr5	29950702	29950703	chr5:29950703:G:A	rs113536137	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	29996036	29996037	chr5:29996037:C:T	rs17509761	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	30040327	30040328	chr5:30040328:A:T	rs17510032	A	T	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	31027952	31027953	chr5:31027953:C:A	rs559922255	C	A	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr5	31379373	31379374	chr5:31379374:A:G	rs56181517	A	G	G	Sox1.mouse_HMG_4	10	1	-	4.267755252179366	-2.608013880944915	GGAAGTGTCATTCA
chr5	31916731	31916732	chr5:31916732:T:C	rs981681	T	C	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr5	31916738	31916739	chr5:31916739:A:T	rs7731762	A	T	T	Sox1.mouse_HMG_4	10	1	-	5.138609269408791	-1.7371598637154906	GGAACAGCTATGCA
chr5	32027777	32027778	chr5:32027778:C:A	rs60852811	C	A	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr5	32241551	32241552	chr5:32241552:T:C	rs76010420	T	C	T	Sox1.mouse_HMG_4	9	1	-	5.235682707474286	1.8708618199712792	TGAACCACCATGCA
chr5	32462582	32462583	chr5:32462583:T:C	rs114514195	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr5	32750876	32750877	chr5:32750877:T:C	rs1173773	T	C	C	Sox1.mouse_HMG_4	4	1	+	7.095090124179789	4.373073305352389	CGAATAATAATGCA
chr5	33033028	33033029	chr5:33033029:T:C	rs1651020	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	33321699	33321700	chr5:33321700:T:C	rs73087153	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	33422937	33422938	chr5:33422938:A:G	rs73074317	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr5	33690674	33690675	chr5:33690675:C:T	rs9292505	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	33807801	33807802	chr5:33807802:C:T	rs9292516	C	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	33974636	33974637	chr5:33974637:C:T	rs3776549	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	34037231	34037232	chr5:34037232:A:G	rs299590	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	34193759	34193760	chr5:34193760:A:G	rs71260960	A	G	N	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr5	34496818	34496819	chr5:34496819:G:C	rs7379232	G	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr5	34496821	34496822	chr5:34496822:G:A	rs7379233	G	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	34597306	34597307	chr5:34597307:G:A	rs13183387	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr5	34718317	34718318	chr5:34718318:G:A	rs11741104	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr5	35037009	35037010	chr5:35037010:C:T	rs37369	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	35047105	35047106	chr5:35047106:G:A	rs37381	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	35247854	35247855	chr5:35247855:T:C	rs75047143	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr5	35430648	35430649	chr5:35430649:T:C	rs16902013	T	C	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr5	35884515	35884516	chr5:35884516:G:A	rs182198367	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	36301259	36301260	chr5:36301260:T:A	rs10941287	T	A	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr5	36301266	36301267	chr5:36301267:T:G	rs884692	T	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	36301271	36301272	chr5:36301272:T:C	rs884693	T	C	T	Sox1.mouse_HMG_4	4	1	+	5.845099216914191	3.123082398086792	GGAATGCAAATGCA
chr5	36371612	36371613	chr5:36371613:C:T	rs6451279	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr5	36371619	36371620	chr5:36371620:G:A	rs7729385	G	A	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	36373814	36373815	chr5:36373815:C:T	rs12652422	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	36431875	36431876	chr5:36431876:C:T	rs4602648	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr5	36553412	36553413	chr5:36553413:A:G	rs12187347	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	37337044	37337045	chr5:37337045:C:T	rs125682	C	T	T	Sox1.mouse_HMG_4	1	1	-	4.96113946539584	-1.9476153139193804	TGAATAGTCCTGCA
chr5	37492708	37492709	chr5:37492709:A:G	rs74794294	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	37667797	37667798	chr5:37667798:G:A	rs1996427	G	A	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr5	37755234	37755235	chr5:37755235:T:C	rs2910721	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	37824681	37824682	chr5:37824682:A:T	rs12521946	A	T	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	38348879	38348880	chr5:38348880:C:T	rs141316852	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	38708451	38708452	chr5:38708452:C:T	rs16867574	C	T	C	Sox1.mouse_HMG_4	12	1	+	9.339189576240218	2.430434796924997	TGAATGAGAATGCA
chr5	39170936	39170937	chr5:39170937:G:A	rs115425806	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr5	39170969	39170970	chr5:39170970:G:A	rs7704354	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr5	39179820	39179821	chr5:39179821:C:A	rs17465405	C	A	C	Sox1.mouse_HMG_4	11	1	-	4.6968953808488365	8.211049483255147	TGAATAGACTTGCA
chr5	39433333	39433334	chr5:39433334:T:C	rs543406974	T	C	t	Sox1.mouse_HMG_4	11	1	+	4.200875860703743	-2.679539053483827	TGAAAGGACATTCC
chr5	39498806	39498807	chr5:39498807:A:T	rs7736947	A	T	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	39522378	39522379	chr5:39522379:T:G	rs2910949	T	G	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr5	39624641	39624642	chr5:39624642:T:G	rs980792	T	G	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	39780578	39780579	chr5:39780579:C:T	rs112066591	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	39868095	39868096	chr5:39868096:A:G	rs72732082	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.420274845927602	-2.4884799333876204	TGACCTGACATGCA
chr5	39882902	39882903	chr5:39882903:A:C	chr5:39882903:A:C	A	C	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr5	40021269	40021270	chr5:40021270:T:C	rs6898412	T	C	T	Sox1.mouse_HMG_4	11	1	+	12.080468495068533	5.200053580880966	TGAACATTTATTCA
chr5	40111351	40111352	chr5:40111352:C:T	rs148291653	C	T	c	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr5	40521789	40521790	chr5:40521790:A:C	rs79980175	A	C	N	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	40603575	40603576	chr5:40603576:G:A	rs146767248	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr5	40603607	40603608	chr5:40603608:C:T	rs956581682	C	T	C	Sox1.mouse_HMG_4	0	1	-	7.011300776927493	3.744396983048711	GGAATGTCTATGCA
chr5	40666069	40666070	chr5:40666070:A:G	rs1034977067	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	40713563	40713564	chr5:40713564:T:A	rs1363847	T	A	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr5	40798927	40798928	chr5:40798928:G:A	rs143913574	G	A	G	Sox1.mouse_HMG_4	8	1	-	10.559720539664282	10.418689241337143	GGAATACACATTCA
chr5	40834761	40834762	chr5:40834762:T:C	rs3816959	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr5	40834769	40834770	chr5:40834770:T:A	rs149212991	T	A	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	40962884	40962885	chr5:40962885:G:A	rs324060	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	41335857	41335858	chr5:41335858:A:T	rs72755973	A	T	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	41510706	41510707	chr5:41510707:C:T	rs199859121	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	41734009	41734010	chr5:41734010:T:C	rs55817686	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr5	42906235	42906236	chr5:42906236:A:G	rs6885355	A	G	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr5	43523566	43523567	chr5:43523567:T:C	rs77198701	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr5	44331648	44331649	chr5:44331649:T:A	rs12652957	T	A	T	Sox1.mouse_HMG_4	13	1	-	6.8726611241908	-0.010083991787169566	TGGATTCTCATTCA
chr5	44570698	44570699	chr5:44570699:T:C	rs72750289	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	45427034	45427035	chr5:45427035:A:G	rs6892290	A	G	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr5	45867573	45867574	chr5:45867574:G:C	rs4560554	G	C	.	Sox1.mouse_HMG_4	1	1	+	11.72491470407515	4.816159924759932	TGAACTGACATTCA
chr5	50574180	50574181	chr5:50574181:C:T	rs6862802	C	T	t	Sox1.mouse_HMG_4	0	1	+	5.588661933544911	9.49021168071951	CGACTTTAAATTCA
chr5	50730979	50730980	chr5:50730980:G:C	rs35473824	G	C	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	50807705	50807706	chr5:50807706:T:C	rs555795262	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr5	51821833	51821834	chr5:51821834:C:T	chr5:51821834:C:T	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	51981694	51981695	chr5:51981695:A:G	rs10067022	A	G	A	Sox1.mouse_HMG_4	5	1	+	8.628035667391288	8.186256444785949	TGAACAAATATGCA
chr5	52009350	52009351	chr5:52009351:T:A	rs13436733	T	A	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr5	52690666	52690667	chr5:52690667:T:C	rs77317050	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	52690686	52690687	chr5:52690687:A:G	rs78896171	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr5	52690688	52690689	chr5:52690689:A:G	rs11739806	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr5	52729559	52729560	chr5:52729560:C:A	rs1645395	C	A	C	Sox1.mouse_HMG_4	13	1	+	5.9936892540173385	9.591770804589103	TGAATGCAAAGTCC
chr5	52883286	52883287	chr5:52883287:C:T	rs2456206	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	52883318	52883319	chr5:52883319:T:A	rs2447863	T	A	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	53365127	53365128	chr5:53365128:A:G	rs7446168	A	G	A	Sox1.mouse_HMG_4	11	1	-	5.04850092953345	-1.8319139846541195	TAAACATACATTCA
chr5	53871197	53871198	chr5:53871198:T:C	rs702605	T	C	C	Sox1.mouse_HMG_4	0	1	+	6.905646770381739	3.004097023207139	TGAATTCTCCTTCA
chr5	53923956	53923957	chr5:53923957:C:A	rs6884046	C	A	A	Sox1.mouse_HMG_4	12	1	+	6.260452106795273	-0.6483026725199477	CGACTTGTAATTCA
chr5	54104189	54104190	chr5:54104190:C:T	rs62370402	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.582195327883516	-2.326559451431704	TGAATAGCTTTGCA
chr5	54333025	54333026	chr5:54333026:T:C	rs7721045	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	54398394	54398395	chr5:54398395:G:C	rs6896174	G	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr5	54398423	54398424	chr5:54398424:T:G	rs116292070	T	G	T	Sox1.mouse_HMG_4	3	1	-	7.107272834793531	3.3167870790522915	TGAATACATATTTA
chr5	54413034	54413035	chr5:54413035:T:G	rs6450195	T	G	G	Sox1.mouse_HMG_4	9	1	-	4.4205637275139065	-2.455205405610374	TGACTAGACACTCA
chr5	54516245	54516246	chr5:54516246:G:C	rs35787364	G	C	G	Sox1.mouse_HMG_4	12	1	-	6.194793028844494	-0.7139617504707259	TGAATTTCAATGCC
chr5	54516262	54516263	chr5:54516263:T:G	rs12658253	T	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	54517121	54517122	chr5:54517122:A:G	rs2548617	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr5	54590899	54590900	chr5:54590900:G:A	rs10471394	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr5	54621661	54621662	chr5:54621662:C:T	rs72754020	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	54744676	54744677	chr5:54744677:T:C	rs76549012	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	54909325	54909326	chr5:54909326:A:C	rs10066023	A	C	A	Sox1.mouse_HMG_4	11	1	-	4.790531398840277	1.2763772964339661	TCAACACTCATTCA
chr5	54969930	54969931	chr5:54969931:A:T	rs1423252	A	T	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr5	54969943	54969944	chr5:54969944:G:T	rs1423251	G	T	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr5	55675328	55675329	chr5:55675329:T:C	rs142546645	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.537605676465919	1.1727847889629126	TGAACAGGCACTCA
chr5	55853578	55853579	chr5:55853579:T:C	rs10940487	T	C	C	Sox1.mouse_HMG_4	3	1	-	6.538154672389151	-0.349265237415046	TGAATTAGCACTCA
chr5	55984492	55984493	chr5:55984493:T:C	rs80234570	T	C	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr5	56034706	56034707	chr5:56034707:C:A	rs116167086	C	A	C	Sox1.mouse_HMG_4	1	1	-	7.189568732339919	0.2808139530246969	AGAATAAGCATTCA
chr5	56148434	56148435	chr5:56148435:A:G	rs16884889	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	56245843	56245844	chr5:56245844:T:G	rs78983851	T	G	T	Sox1.mouse_HMG_4	6	1	-	7.3155647158329	6.467385741316655	TGAATTAATATTAA
chr5	56253223	56253224	chr5:56253224:G:T	rs141937905	G	T	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	56358343	56358344	chr5:56358344:G:C	rs398588	G	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	56377404	56377405	chr5:56377405:G:A	rs55703186	G	A	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	56436756	56436757	chr5:56436757:T:A	rs190748347	T	A	g	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	56567437	56567438	chr5:56567438:A:G	rs10070898	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	56637586	56637587	chr5:56637587:T:C	rs1002860634	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.784103851034185	-0.10331605877001415	GGAATGCTCATTCC
chr5	56910778	56910779	chr5:56910779:G:A	rs76710449	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	57176702	57176703	chr5:57176703:C:A	rs831648	C	A	C	Sox1.mouse_HMG_4	8	1	+	8.097434629724493	7.338746631986051	TGAAGATTCATTCA
chr5	57181359	57181360	chr5:57181360:G:A	rs187877599	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr5	57414687	57414688	chr5:57414688:A:G	rs1038996	A	G	G	Sox1.mouse_HMG_4	0	1	-	5.34335558503732	1.441805837862719	TGAACAGATATACA
chr5	57414695	57414696	chr5:57414696:T:G	rs34906510	T	G	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	57449005	57449006	chr5:57449006:C:G	rs10036435	C	G	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	57477036	57477037	chr5:57477037:T:C	rs927308086	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr5	57591103	57591104	chr5:57591104:C:T	rs16887124	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	57777707	57777708	chr5:57777708:A:G	rs2539731	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr5	57900728	57900729	chr5:57900729:G:A	rs921771	G	A	G	Sox1.mouse_HMG_4	1	1	+	6.475321766209182	-0.4334330131060373	GGAATATGTATGCA
chr5	58099671	58099672	chr5:58099672:C:T	rs12654580	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr5	58131766	58131767	chr5:58131767:C:T	rs2112904	C	T	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr5	58195348	58195349	chr5:58195349:C:A	rs2910596	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	58400211	58400212	chr5:58400212:A:G	rs1396503	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	58404922	58404923	chr5:58404923:C:T	rs1508904	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	58411426	58411427	chr5:58411427:T:C	rs10513145	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	58447642	58447643	chr5:58447643:C:G	rs16877112	C	G	C	Sox1.mouse_HMG_4	12	1	+	7.53817674358733	0.6294219642721097	TGTATTGACATTCA
chr5	58450146	58450147	chr5:58450147:G:A	rs41088	G	A	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	58453023	58453024	chr5:58453024:A:G	rs78301663	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.489616135382229	3.767599316554829	TGTATACAAATTCA
chr5	58503455	58503456	chr5:58503456:G:C	rs9292162	G	C	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr5	58850130	58850131	chr5:58850131:G:A	rs1410235905	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr5	59164818	59164819	chr5:59164819:C:T	rs62357964	C	T	T	Sox1.mouse_HMG_4	10	1	+	4.140416105278177	11.016185238402457	TGAATGGCTACGCA
chr5	59186466	59186467	chr5:59186467:T:C	rs148960090	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr5	59276007	59276008	chr5:59276008:C:T	rs1341909717	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	59357556	59357557	chr5:59357557:C:T	rs11959801	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr5	59542311	59542312	chr5:59542312:T:C	rs7733296	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.604643620173544	4.882626801346143	TGACTGGTCATGCA
chr5	59793357	59793358	chr5:59793358:A:C	rs7705820	A	C	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	59793379	59793380	chr5:59793380:G:A	rs113610557	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.4976790750293825	8.21969589385678	TAAACAATTATTCA
chr5	60527963	60527964	chr5:60527964:C:T	rs7712091	C	T	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr5	60545846	60545847	chr5:60545847:A:G	rs73759338	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr5	61631939	61631940	chr5:61631940:C:T	rs544899810	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr5	61949917	61949918	chr5:61949918:C:A	rs73760523	C	A	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr5	61969352	61969353	chr5:61969353:C:T	rs16897447	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr5	62681801	62681802	chr5:62681802:A:C	rs11952678	A	C	A	Sox1.mouse_HMG_4	13	1	+	11.431633215645977	7.8335516650742125	TGAATAGATATGCA
chr5	62742057	62742058	chr5:62742058:T:G	rs1005051	T	G	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	63401433	63401434	chr5:63401434:G:C	rs4364346	G	C	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr5	63860911	63860912	chr5:63860912:G:A	rs10060813	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	64289296	64289297	chr5:64289297:A:G	rs72752839	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr5	64872253	64872254	chr5:64872254:C:T	rs1113297	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr5	64884159	64884160	chr5:64884160:A:G	rs6898106	A	G	G	Sox1.mouse_HMG_4	2	1	+	4.7005515163617115	-2.2082032629535098	TGAATAGATAGCCA
chr5	64978743	64978744	chr5:64978744:G:A	rs1309579	G	A	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr5	65049671	65049672	chr5:65049672:A:G	rs266595	A	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr5	65199230	65199231	chr5:65199231:C:T	rs1895431	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	65203954	65203955	chr5:65203955:G:A	rs6864345	G	A	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	65326060	65326061	chr5:65326061:C:T	rs72760540	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr5	65359658	65359659	chr5:65359659:A:G	rs7730040	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	65482684	65482685	chr5:65482685:T:C	rs540186294	T	C	T	Sox1.mouse_HMG_4	9	1	-	7.457547536247616	4.09272664874461	TGAAGTTTCATTCA
chr5	65674952	65674953	chr5:65674953:T:C	rs37327	T	C	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr5	65893044	65893045	chr5:65893045:T:C	rs148973043	T	C	T	Sox1.mouse_HMG_4	9	1	-	7.4512230113687234	4.086402123865715	TGAATGAACATGCC
chr5	66580826	66580827	chr5:66580827:A:G	rs4235466	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.601299404072184	4.236478516569177	GGAATGAACAGTCA
chr5	66647470	66647471	chr5:66647471:A:C	rs10515017	A	C	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	66680515	66680516	chr5:66680516:C:T	rs75930533	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	66705068	66705069	chr5:66705069:C:G	rs140521374	C	G	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr5	66828206	66828207	chr5:66828207:T:G	rs34391947	T	G	T	Sox1.mouse_HMG_4	4	1	-	6.895528952693795	11.019594116364974	TGAAAGCCCATTCA
chr5	66878040	66878041	chr5:66878041:G:A	rs25834	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr5	67059972	67059973	chr5:67059973:T:C	rs469009	T	C	C	Sox1.mouse_HMG_4	9	1	-	4.143772010542057	0.7789511230390507	TGAAGGGATATGCA
chr5	67091963	67091964	chr5:67091964:A:T	rs1295182	A	T	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr5	67244614	67244615	chr5:67244615:C:T	rs1428476	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr5	67418182	67418183	chr5:67418183:A:C	rs2707772	A	C	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	67578014	67578015	chr5:67578015:G:A	rs6449880	G	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	67672630	67672631	chr5:67672631:G:A	rs6890557	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	67725038	67725039	chr5:67725039:G:C	rs78418234	G	C	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	67845161	67845162	chr5:67845162:T:C	rs16897097	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	67957460	67957461	chr5:67957461:C:G	rs776203483	C	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	68953634	68953635	chr5:68953635:T:C	rs115859821	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.955451809309777	5.233434990482378	TGGATAAATATTCA
chr5	69285922	69285923	chr5:69285923:A:G	rs6862253	A	G	a	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	71561565	71561566	chr5:71561566:G:A	rs6872235	G	A	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr5	71949982	71949983	chr5:71949983:T:C	rs1217744	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	71969435	71969436	chr5:71969436:T:C	rs2662341	T	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	72127397	72127398	chr5:72127398:A:G	rs10066675	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	72234545	72234546	chr5:72234546:T:C	rs1305258591	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	72611615	72611616	chr5:72611616:T:C	rs17590845	T	C	T	Sox1.mouse_HMG_4	10	1	+	8.333973387888706	1.4582042547644247	TGAACTGTTATGCA
chr5	72634493	72634494	chr5:72634494:A:G	rs720792	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.608417039643795	3.8864002208163964	TAAATTCACATTCA
chr5	72687999	72688000	chr5:72688000:A:C	rs112387326	A	C	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	72741985	72741986	chr5:72741986:T:C	rs10473898	T	C	c	Sox1.mouse_HMG_4	4	1	+	6.462755916325495	3.7407390974980945	GGAATGCATATGCA
chr5	73155324	73155325	chr5:73155325:C:T	rs10059128	C	T	C	Sox1.mouse_HMG_4	0	1	+	6.101467969378106	10.003017716552703	CGAATTCACATGCA
chr5	73155350	73155351	chr5:73155351:C:T	rs490822	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr5	73190309	73190310	chr5:73190310:G:A	rs79302266	G	A	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr5	73190349	73190350	chr5:73190350:T:A	rs116279787	T	A	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	73639189	73639190	chr5:73639190:C:T	rs2544642	C	T	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr5	73842228	73842229	chr5:73842229:G:A	rs2973573	G	A	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	74281926	74281927	chr5:74281927:G:A	rs471572	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	74281952	74281953	chr5:74281953:T:C	rs595208	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	74293386	74293387	chr5:74293387:T:C	rs73762684	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr5	74293420	74293421	chr5:74293421:A:G	rs75366648	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr5	74358821	74358822	chr5:74358822:A:C	rs571408	A	C	a	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr5	74397041	74397042	chr5:74397042:G:A	rs4703633	G	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr5	74639245	74639246	chr5:74639246:A:C	rs115912312	A	C	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr5	76169035	76169036	chr5:76169036:C:A	rs12188309	C	A	.	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr5	76250019	76250020	chr5:76250020:A:G	chr5:76250020:A:G	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	76256259	76256260	chr5:76256260:G:A	rs781659147	G	A	G	Sox1.mouse_HMG_4	11	1	+	5.35059594962744	1.984335137846181	TGACTTAGAATGCA
chr5	76256279	76256280	chr5:76256280:C:T	rs10462538	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	76385980	76385981	chr5:76385981:G:A	rs66882935	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr5	76401613	76401614	chr5:76401614:A:T	rs62363209	A	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	76746084	76746085	chr5:76746085:C:A	rs250744	C	A	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr5	76790771	76790772	chr5:76790772:C:T	rs250763	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr5	77129481	77129482	chr5:77129482:T:C	rs60804339	T	C	T	Sox1.mouse_HMG_4	2	1	-	4.8118662683513	-2.096888510963918	TGATCACTCATTCA
chr5	77147980	77147981	chr5:77147981:A:G	rs72765149	A	G	A	Sox1.mouse_HMG_4	5	1	-	6.905646770381739	3.985818360252651	TGAATTCTCTTTCA
chr5	77168552	77168553	chr5:77168553:G:A	rs189670040	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr5	77181994	77181995	chr5:77181995:A:G	rs2928167	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	77770452	77770453	chr5:77770453:G:C	rs353917	G	C	G	Sox1.mouse_HMG_4	1	1	+	5.158897846358737	-1.749856932956483	TGACCAATCATTCC
chr5	78558320	78558321	chr5:78558321:A:G	rs13186131	A	G	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	78812084	78812085	chr5:78812085:A:G	rs17219410	A	G	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr5	78912870	78912871	chr5:78912871:A:C	rs77040414	A	C	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	79262124	79262125	chr5:79262125:T:C	rs2607142	T	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr5	79401851	79401852	chr5:79401852:A:C	rs6883030	A	C	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	79442686	79442687	chr5:79442687:A:C	rs6453450	A	C	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	79706718	79706719	chr5:79706719:C:T	rs62363668	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr5	79878534	79878535	chr5:79878535:G:A	rs265003	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr5	80091245	80091246	chr5:80091246:A:C	rs2434305	A	C	-	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	80317462	80317463	chr5:80317463:C:T	rs10060692	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	80686990	80686991	chr5:80686991:A:C	rs77908157	A	C	A	Sox1.mouse_HMG_4	11	1	-	4.961603105045369	1.4474490026390585	TAAACAGTAATTCA
chr5	80687002	80687003	chr5:80687003:A:G	rs3797880	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr5	80687019	80687020	chr5:80687020:C:T	rs17205503	C	T	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr5	80753806	80753807	chr5:80753807:C:T	rs245011	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr5	80956714	80956715	chr5:80956715:C:A	rs10491488	C	A	A	Sox1.mouse_HMG_4	6	1	+	6.783640009335136	7.631818983851383	TGAATACTAAGGCA
chr5	81011159	81011160	chr5:81011160:A:C	rs567367	A	C	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr5	81361909	81361910	chr5:81361910:T:C	rs13174473	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	81570534	81570535	chr5:81570535:C:T	rs2972243	C	T	c	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr5	81907161	81907162	chr5:81907162:G:A	rs6452435	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr5	82633093	82633094	chr5:82633094:A:G	rs369200495	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr5	82641405	82641406	chr5:82641406:A:G	rs6861773	A	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	83085054	83085055	chr5:83085055:T:C	rs1478484	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	83548908	83548909	chr5:83548909:T:C	rs309596	T	C	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr5	85189119	85189120	chr5:85189120:G:T	rs113779428	G	T	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr5	85241067	85241068	chr5:85241068:G:A	rs60470996	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr5	85293519	85293520	chr5:85293520:A:C	rs142783130	A	C	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr5	85332301	85332302	chr5:85332302:T:C	rs434346	T	C	N	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	85685158	85685159	chr5:85685159:A:G	rs55748299	A	G	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	85685174	85685175	chr5:85685175:A:G	rs75384787	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	85694325	85694326	chr5:85694326:A:C	rs2410703	A	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr5	86188661	86188662	chr5:86188662:G:T	rs4920718	G	T	T	Sox1.mouse_HMG_4	8	1	-	10.36657315669465	9.60788515895621	TGACTACACATTCA
chr5	86239036	86239037	chr5:86239037:C:A	rs745674389	C	A	-	Sox1.mouse_HMG_4	7	1	+	8.204395082426029	8.178063837064206	TTAATAGCCATTCA
chr5	86680427	86680428	chr5:86680428:G:A	rs6885407	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr5	86750187	86750188	chr5:86750188:T:C	rs12332473	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.238068101553665	1.5160512827262662	GGAATTGTCAATCA
chr5	87787947	87787948	chr5:87787948:G:T	rs560789308	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr5	87791156	87791157	chr5:87791157:T:C	rs11740855	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	88292602	88292603	chr5:88292603:T:C	rs16903057	T	C	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr5	88668809	88668810	chr5:88668810:A:C	rs534461788	A	C	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	88680819	88680820	chr5:88680820:T:C	rs16903284	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	89105952	89105953	chr5:89105953:T:C	rs10070540	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	89650920	89650921	chr5:89650921:G:A	rs72777219	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.345730660271393	8.067747479098792	TGAACATTCTTTCA
chr5	90475382	90475383	chr5:90475383:G:C	rs16868673	G	C	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr5	90910464	90910465	chr5:90910465:G:A	rs36088173	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr5	90939479	90939480	chr5:90939480:C:T	rs11749470	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	91010161	91010162	chr5:91010162:A:G	rs73187127	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr5	91840946	91840947	chr5:91840947:G:A	rs982274665	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.7868458661201725	7.30905948136035	TGAATACTAACTCA
chr5	91844178	91844179	chr5:91844179:C:T	rs1863946	C	T	C	Sox1.mouse_HMG_4	13	1	+	4.641488675176748	1.3568251097705444	GGAATAGTCATGCC
chr5	92099921	92099922	chr5:92099922:G:A	rs11738530	G	A	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	92654905	92654906	chr5:92654906:G:A	rs59571814	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	93162088	93162089	chr5:93162089:G:T	rs191977141	G	T	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	93193887	93193888	chr5:93193888:G:A	rs72784431	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr5	93307648	93307649	chr5:93307649:G:C	rs4869423	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr5	94870131	94870132	chr5:94870132:T:C	rs27002	T	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr5	94949622	94949623	chr5:94949623:T:C	rs10866761	T	C	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr5	95372538	95372539	chr5:95372539:T:G	rs1363429	T	G	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr5	95447915	95447916	chr5:95447916:C:T	rs6556874	C	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	95449654	95449655	chr5:95449655:G:T	rs140811773	G	T	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr5	95449696	95449697	chr5:95449697:T:C	rs12054916	T	C	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr5	95727905	95727906	chr5:95727906:G:A	rs76038744	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	96219998	96219999	chr5:96219999:G:A	rs529296391	G	A	G	Sox1.mouse_HMG_4	1	1	+	8.793051492342085	1.8842967130268633	TGAACAGCCATTCC
chr5	96248689	96248690	chr5:96248690:C:T	rs10074626	C	T	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	96259660	96259661	chr5:96259661:C:T	rs7706771	C	T	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	96538322	96538323	chr5:96538323:G:A	rs2611738	G	A	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	96914752	96914753	chr5:96914753:G:A	rs2548522	G	A	G	Sox1.mouse_HMG_4	8	1	-	11.05939908467862	10.918367786351478	TGAACTCTCATTCA
chr5	97081957	97081958	chr5:97081958:A:G	rs6865929	A	G	A	Sox1.mouse_HMG_4	5	1	-	9.705018779199483	6.7851903690703965	TGACTTGGCATTCA
chr5	97192867	97192868	chr5:97192868:T:G	rs146817373	T	G	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr5	97429026	97429027	chr5:97429027:T:C	rs291831	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.770517748360849	0.8830978385566504	TCAATATACATTCA
chr5	97691511	97691512	chr5:97691512:G:A	rs112439441	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	97782842	97782843	chr5:97782843:A:C	rs74790641	A	C	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr5	98328129	98328130	chr5:98328130:T:G	rs1455429	T	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr5	98415111	98415112	chr5:98415112:A:T	rs7714842	A	T	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr5	98479608	98479609	chr5:98479609:A:C	rs73772962	A	C	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	98771577	98771578	chr5:98771578:T:C	rs79139926	T	C	T	Sox1.mouse_HMG_4	10	1	+	8.044100777422047	1.1683316442977654	TGAACACTTATGCA
chr5	98799379	98799380	chr5:98799380:T:A	rs2545728	T	A	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	98933307	98933308	chr5:98933308:T:C	rs170579	T	C	T	Sox1.mouse_HMG_4	8	1	+	7.397145445260191	7.53817674358733	TGTATTGATATTCA
chr5	98933313	98933314	chr5:98933314:T:C	rs152037	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	99020310	99020311	chr5:99020311:A:G	rs186223257	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	99450032	99450033	chr5:99450033:T:C	rs190092100	T	C	.	Sox1.mouse_HMG_4	6	1	+	6.8801887563370805	6.357975141096903	TGACTATTAATGCA
chr5	100270946	100270947	chr5:100270947:G:A	rs10515300	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	100270988	100270989	chr5:100270989:G:A	rs10515301	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	100833294	100833295	chr5:100833295:G:A	rs1559059	G	A	G	Sox1.mouse_HMG_4	6	1	+	6.800823615359911	6.71924288593262	TGAGTTGAAATTCA
chr5	101103998	101103999	chr5:101103999:T:A	rs13164747	T	A	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	101326871	101326872	chr5:101326872:A:G	rs76757378	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	102306673	102306674	chr5:102306674:A:G	rs72777984	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	102721023	102721024	chr5:102721024:C:G	rs78504491	C	G	G	Sox1.mouse_HMG_4	10	1	-	4.9175478031704145	1.40659955754914	TGAAAAATTAGTCA
chr5	103429178	103429179	chr5:103429179:G:T	rs17165606	G	T	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	103730220	103730221	chr5:103730221:C:A	rs17155760	C	A	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	103806697	103806698	chr5:103806698:C:T	rs17155849	C	T	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr5	104070347	104070348	chr5:104070348:G:T	rs6867069	G	T	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr5	104491687	104491688	chr5:104491688:A:T	rs17165660	A	T	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	104538560	104538561	chr5:104538561:T:G	rs4515268	T	G	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	104645291	104645292	chr5:104645292:C:T	rs1363099	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	104687026	104687027	chr5:104687027:G:T	rs481116	G	T	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr5	104747910	104747911	chr5:104747911:T:C	rs161769	T	C	c	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	106646355	106646356	chr5:106646356:C:T	rs28510213	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr5	106819523	106819524	chr5:106819524:T:C	rs296210	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	106832334	106832335	chr5:106832335:T:C	rs112188443	T	C	t	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	107011849	107011850	chr5:107011850:T:C	rs10062690	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr5	107474596	107474597	chr5:107474597:G:T	rs114555371	G	T	G	Sox1.mouse_HMG_4	6	1	+	6.805819991210709	6.398273902507351	TTAATTGCAATTCA
chr5	107474622	107474623	chr5:107474623:G:A	rs74645910	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	107475186	107475187	chr5:107475187:C:T	rs25993	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr5	107519039	107519040	chr5:107519040:T:C	rs73777884	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr5	108670745	108670746	chr5:108670746:G:A	rs181876918	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	108728419	108728420	chr5:108728420:C:T	chr5:108728420:C:T	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr5	109009777	109009778	chr5:109009778:T:G	rs77970967	T	G	T	Sox1.mouse_HMG_4	2	1	+	6.179203666922144	6.179203666922144	TGTATTTGCATTCA
chr5	109105942	109105943	chr5:109105943:C:T	rs77410424	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	109106345	109106346	chr5:109106346:T:C	rs10063768	T	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr5	109703478	109703479	chr5:109703479:C:T	rs1370959	C	T	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr5	109719099	109719100	chr5:109719100:A:G	rs74535213	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.480882228010071	0.605113094885789	GGAATAGTAATGCA
chr5	109949372	109949373	chr5:109949373:T:C	rs73781895	T	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	110217268	110217269	chr5:110217269:G:A	rs115612670	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	110854701	110854702	chr5:110854702:A:G	rs13357752	A	G	G	Sox1.mouse_HMG_4	3	1	+	4.995906304680914	-1.891513605123283	TGTATAATCAGTCA
chr5	110900554	110900555	chr5:110900555:G:T	rs6868539	G	T	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	110901057	110901058	chr5:110901058:C:G	rs560788671	C	G	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	111136097	111136098	chr5:111136098:C:T	rs11746289	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr5	111383790	111383791	chr5:111383791:A:G	rs12657908	A	G	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr5	111383801	111383802	chr5:111383802:C:A	rs306117	C	A	A	Sox1.mouse_HMG_4	11	1	-	7.889277190084636	11.403431292490946	TGAATGGTTGTGCA
chr5	111743931	111743932	chr5:111743932:A:G	rs77508911	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	111984309	111984310	chr5:111984310:A:G	rs75459491	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	112146847	112146848	chr5:112146848:C:T	rs17651399	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	112185201	112185202	chr5:112185202:C:G	rs10054560	C	G	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr5	112229024	112229025	chr5:112229025:A:G	rs11741200	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	112293498	112293499	chr5:112293499:G:A	rs57428532	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr5	112557991	112557992	chr5:112557992:G:A	rs55655201	G	A	G	Sox1.mouse_HMG_4	7	1	+	10.770570740914591	11.72199772887642	TGAATAGGCAGTCA
chr5	112559658	112559659	chr5:112559659:T:G	rs7704906	T	G	G	Sox1.mouse_HMG_4	3	1	-	7.022379384190478	3.231893628449238	TGAATCTCAAGTCA
chr5	112559681	112559682	chr5:112559682:C:G	rs6594612	C	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	112876627	112876628	chr5:112876628:T:C	rs3733963	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	113045145	113045146	chr5:113045146:C:T	rs6877769	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr5	113047538	113047539	chr5:113047539:T:C	rs28614469	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr5	113816450	113816451	chr5:113816451:C:T	rs10044711	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	114143645	114143646	chr5:114143646:G:C	rs2954354	G	C	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	115642114	115642115	chr5:115642115:A:T	rs115219303	A	T	a	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	115642130	115642131	chr5:115642131:T:C	rs2303747	T	C	c	Sox1.mouse_HMG_4	3	1	-	7.966001442877849	1.078581533073651	TGAATCACTAGTCA
chr5	115673603	115673604	chr5:115673604:T:A	rs7732489	T	A	T	Sox1.mouse_HMG_4	11	1	+	7.011829750622406	0.1314148364348362	TAAATATAAATTCA
chr5	116543661	116543662	chr5:116543662:C:G	rs17526775	C	G	C	Sox1.mouse_HMG_4	5	1	-	4.549047393416202	1.431111112415577	TGAAGGGTCATGCA
chr5	116546501	116546502	chr5:116546502:A:G	rs55920359	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr5	116583015	116583016	chr5:116583016:T:A	rs76005882	T	A	t	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	116616577	116616578	chr5:116616578:G:A	rs680878	G	A	G	Sox1.mouse_HMG_4	6	1	+	6.9903283494364965	6.9087476200092075	GGAATTGTAAGTCA
chr5	116637669	116637670	chr5:116637670:A:G	rs56338036	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr5	116939880	116939881	chr5:116939881:T:G	rs78008264	T	G	T	Sox1.mouse_HMG_4	9	1	-	8.185487149815378	1.3097180166910978	TGAAAAACCATTCA
chr5	116991059	116991060	chr5:116991060:A:C	rs4512160	A	C	A	Sox1.mouse_HMG_4	0	1	-	7.3155647158329	3.7182263430612927	TGAATTAATATTAA
chr5	117546841	117546842	chr5:117546842:G:A	rs76204800	G	A	G	Sox1.mouse_HMG_4	13	1	-	4.243280055815735	0.9586164904095309	AGAATATCCATTCC
chr5	117731705	117731706	chr5:117731706:G:A	rs12653759	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr5	118520649	118520650	chr5:118520650:T:C	rs4440399	T	C	C	Sox1.mouse_HMG_4	3	1	-	4.286543463396446	-2.600876446407751	TGAATGGCTGGGCA
chr5	118549070	118549071	chr5:118549071:A:C	rs1429728	A	C	C	Sox1.mouse_HMG_4	11	1	+	7.630379059573131	7.630379059573131	TGAATAATAATACA
chr5	118549080	118549081	chr5:118549081:C:G	rs76538009	C	G	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	118749558	118749559	chr5:118749559:T:C	rs17144517	T	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr5	119274864	119274865	chr5:119274865:G:C	rs1504978	G	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	119274904	119274905	chr5:119274905:A:T	chr5:119274905:A:T	A	T	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	119279648	119279649	chr5:119279649:A:G	rs115163709	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	119342572	119342573	chr5:119342573:A:C	rs250301	A	C	a	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	119346723	119346724	chr5:119346724:T:C	rs80062960	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.844969548839603	-2.0307995842846776	GAAATAGTCATTCA
chr5	119396491	119396492	chr5:119396492:C:G	rs7703744	C	G	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	119452737	119452738	chr5:119452738:G:A	rs78611678	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	119746113	119746114	chr5:119746114:A:C	rs75595081	A	C	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	119746115	119746116	chr5:119746116:A:T	rs162306	A	T	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr5	120165222	120165223	chr5:120165223:A:G	rs143160149	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	120255433	120255434	chr5:120255434:A:G	rs35850	A	G	A	Sox1.mouse_HMG_4	3	1	+	8.09314357350479	1.2057236637005937	TGAATAGCTGTGCA
chr5	120387875	120387876	chr5:120387876:A:G	rs189772903	A	G	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	120515682	120515683	chr5:120515683:A:G	rs73264200	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	120616757	120616758	chr5:120616758:A:G	rs72792301	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	121191707	121191708	chr5:121191708:A:C	rs1428243	A	C	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	121350790	121350791	chr5:121350791:C:G	rs10065954	C	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr5	121902194	121902195	chr5:121902195:C:T	rs71592579	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	122014224	122014225	chr5:122014225:T:C	rs76983994	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr5	122118487	122118488	chr5:122118488:C:T	rs76188166	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	122559466	122559467	chr5:122559467:G:A	rs1382308	G	A	G	Sox1.mouse_HMG_4	7	1	-	4.463284946546046	4.701197785731229	TGAACTTCCATCCA
chr5	122599210	122599211	chr5:122599211:A:C	rs11739754	A	C	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr5	122691352	122691353	chr5:122691353:T:C	rs6871729	T	C	T	Sox1.mouse_HMG_4	0	1	+	14.237493305070728	10.335943557896131	TGAATGTACATTCA
chr5	122751414	122751415	chr5:122751415:T:C	rs114824277	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	122775725	122775726	chr5:122775726:C:G	rs78022559	C	G	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	122795504	122795505	chr5:122795505:C:G	rs372904542	C	G	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	122976847	122976848	chr5:122976848:G:A	rs34486978	G	A	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	123755252	123755253	chr5:123755253:C:T	rs1003761501	C	T	c	Sox1.mouse_HMG_4	13	1	+	6.326712383517549	3.042048818111345	TGACTGCACATTCC
chr5	123755268	123755269	chr5:123755269:A:G	rs27401	A	G	a	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr5	124044229	124044230	chr5:124044230:T:C	rs6595507	T	C	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	124060978	124060979	chr5:124060979:A:G	rs11747295	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	124514859	124514860	chr5:124514860:G:T	rs12719325	G	T	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr5	124689756	124689757	chr5:124689757:A:G	rs10079692	A	G	A	Sox1.mouse_HMG_4	9	1	+	11.05939908467862	7.6945781971756135	TGAACTCTCATTCA
chr5	124739526	124739527	chr5:124739527:T:A	rs74551203	T	A	T	Sox1.mouse_HMG_4	8	1	+	7.708899945380751	7.091243245969449	TGACTAAATAGTCA
chr5	124908962	124908963	chr5:124908963:A:G	rs965422732	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.8295457583273045	4.4647248708242975	TGAACTTCCATGCA
chr5	124909291	124909292	chr5:124909292:T:C	rs77888911	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr5	124971303	124971304	chr5:124971304:C:A	rs10044837	C	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	125107273	125107274	chr5:125107274:A:G	rs75330213	A	G	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr5	125148553	125148554	chr5:125148554:T:C	rs12189383	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr5	125148574	125148575	chr5:125148575:G:A	rs10071094	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	125227482	125227483	chr5:125227483:C:T	rs150280517	C	T	C	Sox1.mouse_HMG_4	13	1	+	8.03436349460364	4.749699929197437	TGAACAGCAATTCC
chr5	125257479	125257480	chr5:125257480:G:T	rs1347924	G	T	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	125703685	125703686	chr5:125703686:C:T	rs10060943	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr5	125877433	125877434	chr5:125877434:T:C	rs72790894	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	125877442	125877443	chr5:125877443:G:T	rs137865738	G	T	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr5	125973081	125973082	chr5:125973082:C:G	rs34038	C	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr5	126182982	126182983	chr5:126182983:G:A	rs17583760	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	126186990	126186991	chr5:126186991:T:C	rs10478702	T	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr5	126395543	126395544	chr5:126395544:G:A	rs781105533	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr5	126428935	126428936	chr5:126428936:C:G	rs4323230	C	G	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr5	126780267	126780268	chr5:126780268:T:A	rs192102490	T	A	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	126780268	126780269	chr5:126780269:A:T	rs111647101	A	T	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	127011851	127011852	chr5:127011852:G:A	rs9327428	G	A	G	Sox1.mouse_HMG_4	7	1	+	6.586749755625502	7.53817674358733	TTAATTGGCATTCA
chr5	127063518	127063519	chr5:127063519:A:C	rs913209734	A	C	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	127643996	127643997	chr5:127643997:T:C	rs28527369	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr5	127908813	127908814	chr5:127908814:C:T	rs1235243	C	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	128379010	128379011	chr5:128379011:G:A	rs56090677	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr5	128453100	128453101	chr5:128453101:G:T	rs11742635	G	T	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	128534749	128534750	chr5:128534750:T:C	rs142308431	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr5	129510685	129510686	chr5:129510686:A:T	rs79859712	A	T	A	Sox1.mouse_HMG_4	7	1	-	5.4976790750293825	5.233434990482378	TTAACAATTATTCA
chr5	129873688	129873689	chr5:129873689:G:T	rs7704061	G	T	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	129961052	129961053	chr5:129961053:G:A	rs115154244	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	130001249	130001250	chr5:130001250:G:A	rs4533923	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	130826990	130826991	chr5:130826991:C:T	rs12517680	C	T	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	130977320	130977321	chr5:130977321:T:G	rs145022969	T	G	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	131214649	131214650	chr5:131214650:A:G	rs7710461	A	G	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr5	131265506	131265507	chr5:131265507:G:C	rs10478979	G	C	G	Sox1.mouse_HMG_4	6	1	+	5.315015719909668	4.3852560159661325	TCAACAGATATTCA
chr5	131274877	131274878	chr5:131274878:G:A	rs146488616	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr5	131721115	131721116	chr5:131721116:T:C	rs644964	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	132047271	132047272	chr5:132047272:C:T	rs77544389	C	T	C	Sox1.mouse_HMG_4	8	1	+	5.140159830924844	4.999128532597704	TGAAGAGTCGTTCA
chr5	132255337	132255338	chr5:132255338:G:C	rs162903	G	C	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	132412627	132412628	chr5:132412628:A:G	rs115114965	A	G	G	Sox1.mouse_HMG_4	4	1	-	7.007376406126328	4.285359587298929	TGAATGGAAGTGCA
chr5	132468175	132468176	chr5:132468176:A:G	rs10067603	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	132477629	132477630	chr5:132477630:C:T	rs114295980	C	T	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr5	132477630	132477631	chr5:132477631:T:C	rs77118102	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	132520323	132520324	chr5:132520324:A:T	rs11738703	A	T	A	Sox1.mouse_HMG_4	9	1	+	7.156961900245793	0.2811927671215122	TAAATTTCCATTCA
chr5	132862506	132862507	chr5:132862507:G:A	rs254286	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr5	133934940	133934941	chr5:133934941:G:A	rs139559536	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	133993306	133993307	chr5:133993307:T:C	rs6897409	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr5	134028566	134028567	chr5:134028567:C:T	rs13173424	C	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	134077387	134077388	chr5:134077388:C:T	rs10040756	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr5	134184533	134184534	chr5:134184534:C:G	rs146922252	C	G	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	134454108	134454109	chr5:134454109:A:G	rs141296128	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.579982286492443	1.2151613989894354	TGAATAGACATTTC
chr5	134466751	134466752	chr5:134466752:A:G	rs112862029	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr5	134846870	134846871	chr5:134846871:G:T	rs73299361	G	T	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	135064700	135064701	chr5:135064701:G:A	rs10057449	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	135071432	135071433	chr5:135071433:G:C	rs73286830	G	C	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr5	135310407	135310408	chr5:135310408:T:C	rs114577697	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	135386304	135386305	chr5:135386305:T:C	rs779567	T	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	135728799	135728800	chr5:135728800:A:G	rs4976326	A	G	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr5	135892475	135892476	chr5:135892476:G:A	rs2069885	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr5	136086753	136086754	chr5:136086754:C:T	rs11242311	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	136088827	136088828	chr5:136088828:G:A	rs114920499	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr5	136149925	136149926	chr5:136149926:A:G	rs9327747	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr5	136516754	136516755	chr5:136516755:A:G	chr5:136516755:A:G	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	136984609	136984610	chr5:136984610:C:A	rs17646327	C	A	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr5	136985068	136985069	chr5:136985069:A:G	rs17521219	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr5	137269793	137269794	chr5:137269794:A:C	rs2060427	A	C	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	137415825	137415826	chr5:137415826:C:A	rs35091372	C	A	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	137575599	137575600	chr5:137575600:C:T	rs12656052	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	137590993	137590994	chr5:137590994:C:G	rs7710244	C	G	C	Sox1.mouse_HMG_4	12	1	+	4.642655083309081	-2.2660996960061395	TGAAAAGACATTCC
chr5	137636970	137636971	chr5:137636971:A:C	rs2074349	A	C	C	Sox1.mouse_HMG_4	10	1	-	6.85897373773118	3.494152850228173	GGAATCCATATTCA
chr5	137673073	137673074	chr5:137673074:C:A	rs2905587	C	A	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr5	138915608	138915609	chr5:138915609:G:T	rs56215057	G	T	G	Sox1.mouse_HMG_4	6	1	-	4.37709204136259	5.2252710158788345	TGAACGCTCATACA
chr5	138945571	138945572	chr5:138945572:G:A	rs6878910	G	A	A	Sox1.mouse_HMG_4	4	1	-	4.8459397141658345	7.567956532993233	TGAACTGACAGGCA
chr5	139187032	139187033	chr5:139187033:C:G	rs112135024	C	G	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	140033578	140033579	chr5:140033579:G:A	rs60293875	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	140140970	140140971	chr5:140140971:C:T	rs155947	C	T	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr5	140526258	140526259	chr5:140526259:G:A	rs1051309	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr5	140604115	140604116	chr5:140604116:T:C	rs778606	T	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr5	141183597	141183598	chr5:141183598:G:T	rs28664170	G	T	-	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr5	141484351	141484352	chr5:141484352:T:A	rs112226980	T	A	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr5	141525278	141525279	chr5:141525279:C:T	rs145805190	C	T	C	Sox1.mouse_HMG_4	6	1	+	4.444572907518893	4.96678652275907	TGAACACCTCTTCA
chr5	141604280	141604281	chr5:141604281:T:C	rs17648271	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.135612699921183	0.2598435667969017	TGAATACATATACA
chr5	141690942	141690943	chr5:141690943:A:G	rs248607	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	141705540	141705541	chr5:141705541:A:T	rs248588	A	T	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr5	141837198	141837199	chr5:141837199:G:T	rs422348	G	T	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr5	142308939	142308940	chr5:142308940:T:C	rs7703928	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	142398420	142398421	chr5:142398421:G:A	rs10037340	G	A	A	Sox1.mouse_HMG_4	12	1	-	5.237185239455914	-1.6715695398593065	CGAATTGGAATTCC
chr5	142471756	142471757	chr5:142471757:A:T	rs78864562	A	T	A	Sox1.mouse_HMG_4	5	1	-	12.758483821220572	13.398370914697448	TGAATTCAAATTCA
chr5	142613365	142613366	chr5:142613366:C:T	rs73277628	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr5	142662143	142662144	chr5:142662144:C:T	rs4912645	C	T	c	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	142662144	142662145	chr5:142662145:G:A	rs74440289	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	142668265	142668266	chr5:142668266:A:G	rs9324887	A	G	A	Sox1.mouse_HMG_4	9	1	+	6.179203666922144	2.8143827794191374	TCAATTTGCATTCA
chr5	142688011	142688012	chr5:142688012:C:T	rs17208915	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr5	142821556	142821557	chr5:142821557:T:C	rs182713903	T	C	T	Sox1.mouse_HMG_4	7	1	+	7.434174954678893	7.196262115493708	GGAATTATCATTCC
chr5	142837677	142837678	chr5:142837678:G:A	rs73286427	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	143140969	143140970	chr5:143140970:G:A	rs147898126	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr5	143218048	143218049	chr5:143218049:G:A	rs1003927	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.595939306192727	4.514358576765437	TGACCTGCCAGTCA
chr5	143226735	143226736	chr5:143226736:C:A	rs154787	C	A	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr5	143427324	143427325	chr5:143427325:A:G	rs4912910	A	G	A	Sox1.mouse_HMG_4	11	1	-	7.880914665186138	1.0004997509985678	TGACTAATCATTCC
chr5	143554053	143554054	chr5:143554054:T:C	rs7732768	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr5	143696172	143696173	chr5:143696173:G:A	rs11739252	G	A	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr5	144016716	144016717	chr5:144016717:C:T	rs160617	C	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	144024803	144024804	chr5:144024804:T:C	rs312623	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr5	144139761	144139762	chr5:144139762:A:G	rs11948123	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	144139762	144139763	chr5:144139763:T:C	rs72800557	T	C	C	Sox1.mouse_HMG_4	0	1	+	4.963580665974034	1.0620309187994341	TGAACATCTGTGCA
chr5	144183344	144183345	chr5:144183345:A:G	rs138936365	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr5	145146101	145146102	chr5:145146102:T:G	rs72806502	T	G	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	145166366	145166367	chr5:145166367:A:C	rs2400170	A	C	a	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	145472825	145472826	chr5:145472826:C:G	rs34565985	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	145785506	145785507	chr5:145785507:A:G	rs4304121	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr5	145984067	145984068	chr5:145984068:T:A	rs1076333	T	A	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr5	146007690	146007691	chr5:146007691:G:C	rs758038	G	C	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	146067314	146067315	chr5:146067315:G:A	rs17104208	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr5	146217261	146217262	chr5:146217262:C:T	rs113819330	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	146660188	146660189	chr5:146660189:G:A	rs322979	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.5159129057128	7.753825744897983	TGAATTACCCTTCA
chr5	146720261	146720262	chr5:146720262:G:C	rs3844189	G	C	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr5	146833663	146833664	chr5:146833664:G:A	rs249901	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.274635378482493	7.512548217667676	TTAATACCCATTCA
chr5	147061654	147061655	chr5:147061655:G:T	rs1871579	G	T	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	147177900	147177901	chr5:147177901:A:G	rs1432654	A	G	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	147327738	147327739	chr5:147327739:A:C	rs7728309	A	C	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	147508374	147508375	chr5:147508375:T:C	rs116269127	T	C	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr5	147578526	147578527	chr5:147578527:G:A	rs74481612	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	147694663	147694664	chr5:147694664:A:G	rs10074880	A	G	G	Sox1.mouse_HMG_4	0	1	-	6.869197707331973	2.9676479601573726	TGAAGGCACATTCA
chr5	147835629	147835630	chr5:147835630:T:C	rs7727286	T	C	T	Sox1.mouse_HMG_4	2	1	-	8.16554823509723	1.2567934557820086	TGAATAATTAGTCC
chr5	147969139	147969140	chr5:147969140:A:G	rs138087387	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	148011759	148011760	chr5:148011760:A:G	rs66697073	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	148346066	148346067	chr5:148346067:C:A	rs1422970	C	A	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr5	148658725	148658726	chr5:148658726:C:T	rs34285995	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr5	148734454	148734455	chr5:148734455:A:G	rs72820822	A	G	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr5	148774558	148774559	chr5:148774559:G:A	rs30310	G	A	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	148808214	148808215	chr5:148808215:T:C	rs142916474	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	148889256	148889257	chr5:148889257:T:C	rs10042562	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr5	148956649	148956650	chr5:148956650:G:A	rs4705300	G	A	G	Sox1.mouse_HMG_4	8	1	-	3.897718582989042	3.7566872846619024	TGAACTGGCCTTCA
chr5	148959491	148959492	chr5:148959492:G:A	rs143100708	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	148993742	148993743	chr5:148993743:C:T	rs13166730	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	149048901	149048902	chr5:149048902:T:G	chr5:149048902:T:G	T	G	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr5	149217814	149217815	chr5:149217815:A:G	rs2963496	A	G	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr5	149242946	149242947	chr5:149242947:T:A	rs60501669	T	A	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr5	149562007	149562008	chr5:149562008:A:G	rs77063086	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr5	149562035	149562036	chr5:149562036:G:A	rs539164828	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr5	150043545	150043546	chr5:150043546:T:G	rs531535447	T	G	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	150139587	150139588	chr5:150139588:C:T	rs12523235	C	T	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr5	150164226	150164227	chr5:150164227:C:A	rs10875555	C	A	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr5	150164248	150164249	chr5:150164249:T:C	rs6887526	T	C	T	Sox1.mouse_HMG_4	8	1	+	5.834691494932148	5.975722793259287	TGAATTTGTATGCC
chr5	150225724	150225725	chr5:150225725:G:A	rs4958467	G	A	G	Sox1.mouse_HMG_4	8	1	-	10.267261801099709	10.12623050277257	TGAATTCTCATGCA
chr5	150258442	150258443	chr5:150258443:G:A	chr5:150258443:G:A	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr5	150543646	150543647	chr5:150543647:C:T	rs11746198	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	150598253	150598254	chr5:150598254:C:T	rs114901049	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	150734180	150734181	chr5:150734181:C:T	rs9324650	C	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	151081723	151081724	chr5:151081724:A:G	rs28372811	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr5	151151925	151151926	chr5:151151926:A:G	chr5:151151926:A:G	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	151180753	151180754	chr5:151180754:G:C	rs449630	G	C	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr5	151251283	151251284	chr5:151251284:G:A	rs153483	G	A	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	151256097	151256098	chr5:151256098:T:G	rs577761958	T	G	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr5	151273279	151273280	chr5:151273280:A:G	rs58426811	A	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	151572597	151572598	chr5:151572598:C:A	rs7737011	C	A	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr5	151588573	151588574	chr5:151588574:C:G	rs7728089	C	G	C	Sox1.mouse_HMG_4	12	1	+	8.097434629724493	1.1886798504092722	TGAAGATTCATTCA
chr5	151616107	151616108	chr5:151616108:A:T	rs75308472	A	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	151864201	151864202	chr5:151864202:T:A	rs9324714	T	A	T	Sox1.mouse_HMG_4	0	1	+	4.524456302581629	-2.3397858640687614	TGAATGGTTGGGCA
chr5	152560738	152560739	chr5:152560739:G:A	rs146221758	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr5	152642206	152642207	chr5:152642207:A:G	rs4958323	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr5	152676043	152676044	chr5:152676044:G:A	rs17113588	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	152709099	152709100	chr5:152709100:G:A	rs13172785	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	153209144	153209145	chr5:153209145:T:C	rs1462118	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	153477018	153477019	chr5:153477019:C:T	rs7724083	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	153477019	153477020	chr5:153477020:A:G	rs66925399	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr5	153524052	153524053	chr5:153524053:C:T	rs564417102	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr5	153563706	153563707	chr5:153563707:A:C	rs74474458	A	C	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	154049497	154049498	chr5:154049498:G:A	rs2254996	G	A	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr5	154057855	154057856	chr5:154057856:T:C	rs72806621	T	C	t	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr5	154239487	154239488	chr5:154239488:G:A	rs113813792	G	A	G	Sox1.mouse_HMG_4	5	1	+	7.049895395875193	7.491674618480532	TGAACGTGCATGCA
chr5	154258738	154258739	chr5:154258739:C:T	rs506674	C	T	C	Sox1.mouse_HMG_4	11	1	-	4.636093321260166	1.2698325094789071	TGAATAGCCAGGCC
chr5	154940331	154940332	chr5:154940332:C:T	rs348750	C	T	C	Sox1.mouse_HMG_4	10	1	+	7.044815396813345	13.920584529937624	TGAATATAAACTCA
chr5	155154859	155154860	chr5:155154860:T:C	rs7716693	T	C	t	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	155480762	155480763	chr5:155480763:G:A	rs190202354	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr5	155877288	155877289	chr5:155877289:G:A	rs244991	G	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr5	156202035	156202036	chr5:156202036:G:A	rs4704993	G	A	A	Sox1.mouse_HMG_4	1	1	+	9.56945063088323	2.6606958515680095	CGAATGAGTATTCA
chr5	156589912	156589913	chr5:156589913:C:G	rs534820996	C	G	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr5	157384434	157384435	chr5:157384435:G:A	rs10063413	G	A	G	Sox1.mouse_HMG_4	7	1	+	6.2456464615980245	7.19707344955985	TGAACTCGCATTCC
chr5	157648436	157648437	chr5:157648437:G:C	rs7713029	G	C	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr5	157660110	157660111	chr5:157660111:G:C	rs11739081	G	C	g	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr5	158003621	158003622	chr5:158003622:G:A	rs56011209	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	158399272	158399273	chr5:158399273:G:A	rs7724836	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr5	158511493	158511494	chr5:158511494:C:A	rs2963446	C	A	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	158966833	158966834	chr5:158966834:T:G	rs12109219	T	G	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr5	159391380	159391381	chr5:159391381:A:G	rs67957204	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr5	159421062	159421063	chr5:159421063:T:C	rs4921496	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr5	159773450	159773451	chr5:159773451:T:G	rs796901212	T	G	T	Sox1.mouse_HMG_4	0	1	+	5.053447869818436	1.4561094970468276	TGAATTATGATGCA
chr5	159807832	159807833	chr5:159807833:T:A	rs6863332	T	A	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	159987576	159987577	chr5:159987577:G:A	rs75899007	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr5	160088996	160088997	chr5:160088997:T:C	rs7447998	T	C	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	160889257	160889258	chr5:160889258:A:C	rs10069908	A	C	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr5	162067845	162067846	chr5:162067846:C:T	rs3219203	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr5	162165153	162165154	chr5:162165154:C:T	rs176817	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr5	162242874	162242875	chr5:162242875:G:A	rs4128403	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	162498849	162498850	chr5:162498850:A:G	rs1484363	A	G	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr5	163134149	163134150	chr5:163134150:T:C	rs11135240	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.263143153453957	-2.6242767563502394	TGAATCTCCATTCT
chr5	163460205	163460206	chr5:163460206:G:T	rs964632272	G	T	G	Sox1.mouse_HMG_4	12	1	-	5.040599040993291	-1.8681557383219298	TAAACGGCCATTCA
chr5	163462026	163462027	chr5:163462027:G:A	rs149069501	G	A	G	Sox1.mouse_HMG_4	8	1	-	7.394874739430977	7.253843441103836	TGTATTTTCATTCA
chr5	163705922	163705923	chr5:163705923:G:A	rs72810235	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr5	163759371	163759372	chr5:163759372:T:C	rs2635177	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr5	163920541	163920542	chr5:163920542:T:C	rs2544999	T	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr5	163921161	163921162	chr5:163921162:C:A	rs72812083	C	A	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr5	164532985	164532986	chr5:164532986:C:A	rs11956148	C	A	C	Sox1.mouse_HMG_4	8	1	+	4.872270959527655	4.113582961789214	TGAACTGCCAGGCA
chr5	165003664	165003665	chr5:165003665:C:T	rs11490108	C	T	C	Sox1.mouse_HMG_4	5	1	-	4.6775655649547625	5.1193447875601015	AGAACGTCCATTCA
chr5	165278620	165278621	chr5:165278621:G:A	rs34352302	G	A	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr5	165676755	165676756	chr5:165676756:A:G	rs28718485	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr5	166761865	166761866	chr5:166761866:G:A	rs116496999	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	167652515	167652516	chr5:167652516:C:T	rs2061446	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr5	167698372	167698373	chr5:167698373:A:G	rs78370857	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.0583642165895455	3.6935433290865394	TGACTTGACATTCC
chr5	167765301	167765302	chr5:167765302:G:A	rs2337001	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr5	167767997	167767998	chr5:167767998:T:G	rs144211177	T	G	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr5	167939809	167939810	chr5:167939810:G:A	rs40583	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.799594587579414	-2.109160191735806	TGAATCCTGATTCA
chr5	167986199	167986200	chr5:167986200:A:G	rs2546957	A	G	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	168613073	168613074	chr5:168613074:A:C	rs75574614	A	C	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	168656881	168656882	chr5:168656882:C:G	rs9313420	C	G	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	168738393	168738394	chr5:168738394:A:G	rs10079276	A	G	G	Sox1.mouse_HMG_4	9	1	+	7.4565960141600405	4.0917751266570335	TGTATTAACATTCA
chr5	168798832	168798833	chr5:168798833:C:T	rs11134532	C	T	T	Sox1.mouse_HMG_4	12	1	+	7.069012851903875	0.16025807258865465	TGACTTAATAGTCA
chr5	168820559	168820560	chr5:168820560:C:G	rs924873	C	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr5	169095306	169095307	chr5:169095307:G:A	rs11134558	G	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr5	169150732	169150733	chr5:169150733:A:C	rs297830	A	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	169218004	169218005	chr5:169218005:A:G	rs59308124	A	G	A	Sox1.mouse_HMG_4	11	1	-	6.730893662612536	-0.1495212515750326	TGAATTAAATTTCA
chr5	169286928	169286929	chr5:169286929:T:C	rs868381856	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr5	169431646	169431647	chr5:169431647:C:T	rs55752502	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr5	169494197	169494198	chr5:169494198:T:C	rs973750	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr5	170147997	170147998	chr5:170147998:T:A	rs17671667	T	A	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr5	170182474	170182475	chr5:170182475:C:T	rs4242155	C	T	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr5	170182485	170182486	chr5:170182486:C:A	rs1005721	C	A	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	170287469	170287470	chr5:170287470:A:G	rs115028651	A	G	A	Sox1.mouse_HMG_4	6	1	+	7.951933615769523	8.033514345196812	TGAATGATCAATCA
chr5	170408853	170408854	chr5:170408854:G:A	rs77273451	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	170452858	170452859	chr5:170452859:C:T	rs4867966	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr5	170603797	170603798	chr5:170603798:G:C	rs62394331	G	C	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr5	170626264	170626265	chr5:170626265:T:C	rs905827	T	C	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr5	170747854	170747855	chr5:170747855:T:A	rs7705420	T	A	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	170864856	170864857	chr5:170864857:A:G	rs10061305	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.446959761098936	4.209046921913754	AGAATGGTCATTCC
chr5	170941902	170941903	chr5:170941903:A:C	rs9313530	A	C	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr5	171092812	171092813	chr5:171092813:G:A	rs2591499	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr5	171271204	171271205	chr5:171271205:A:G	rs3749695	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.717376681848218	4.352555794345212	TGAAAGAACATTCA
chr5	172114014	172114015	chr5:172114015:C:T	rs6555996	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr5	172331500	172331501	chr5:172331501:A:G	rs17074639	A	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr5	172544012	172544013	chr5:172544013:G:C	rs56740031	G	C	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	172556752	172556753	chr5:172556753:T:C	rs17655085	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr5	172584343	172584344	chr5:172584344:C:T	rs6864946	C	T	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr5	172584355	172584356	chr5:172584356:A:G	rs57073016	A	G	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr5	172659512	172659513	chr5:172659513:A:G	rs112690631	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.643398261109238	-2.239346854868731	GGAAGAGACATTCA
chr5	172875054	172875055	chr5:172875055:A:G	rs184897352	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.56433649510486	-2.3444182842103576	AGAACGGTAATTCA
chr5	173373777	173373778	chr5:173373778:C:T	rs35308737	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr5	173530786	173530787	chr5:173530787:C:T	chr5:173530787:C:T	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr5	173578488	173578489	chr5:173578489:G:A	rs4868295	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	173599316	173599317	chr5:173599317:A:G	rs174053	A	G	A	Sox1.mouse_HMG_4	10	1	-	3.903588465527661	-2.9721806675966205	TGAAAGTCCATGCA
chr5	173753988	173753989	chr5:173753989:C:T	rs75772509	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	173893811	173893812	chr5:173893812:G:A	rs7705502	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr5	173955773	173955774	chr5:173955774:A:G	rs62378660	A	G	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr5	174064296	174064297	chr5:174064297:G:A	rs17076802	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr5	174161372	174161373	chr5:174161373:C:T	rs62396465	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	174280231	174280232	chr5:174280232:A:G	rs6878584	A	G	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr5	174318255	174318256	chr5:174318256:A:C	rs2936926	A	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr5	174385157	174385158	chr5:174385158:G:A	rs2964036	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.820666262312372	-2.0880885170028485	TGAAAAACCAGTCA
chr5	174426378	174426379	chr5:174426379:A:G	rs2017346	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr5	174426390	174426391	chr5:174426391:A:G	rs62394132	A	G	a	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr5	174427789	174427790	chr5:174427790:A:G	rs2909705	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr5	175058050	175058051	chr5:175058051:T:C	rs1394612	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr5	175464429	175464430	chr5:175464430:T:C	rs2453740	T	C	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	175495093	175495094	chr5:175495094:T:C	rs7702420	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr5	175580606	175580607	chr5:175580607:G:A	rs2936711	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr5	175585465	175585466	chr5:175585466:C:A	rs7735518	C	A	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	175585484	175585485	chr5:175585485:C:A	rs867339	C	A	A	Sox1.mouse_HMG_4	1	1	-	4.661346296866901	-2.2474084824483187	TGAATGTAGATGCA
chr5	175823948	175823949	chr5:175823949:G:A	rs753305935	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr5	175823956	175823957	chr5:175823957:T:A	rs150454226	T	A	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr5	176407220	176407221	chr5:176407221:G:T	rs748037108	G	T	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr5	177000478	177000479	chr5:177000479:C:T	rs10043013	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr5	177170692	177170693	chr5:177170693:C:A	rs9313749	C	A	A	Sox1.mouse_HMG_4	6	1	-	10.01188274317615	9.60433665447279	TGAATAGGAAGTCA
chr5	177971815	177971816	chr5:177971816:T:C	rs56207434	T	C	.	Sox1.mouse_HMG_4	0	1	-	4.281646102781537	7.548549896660318	AGAATCTCCATTCA
chr5	178069054	178069055	chr5:178069055:G:A	rs13356137	G	A	.	Sox1.mouse_HMG_4	7	1	-	5.235682707474286	5.473595546659469	TGAACCACCATGCA
chr5	178214230	178214231	chr5:178214231:T:C	rs2961677	T	C	T	Sox1.mouse_HMG_4	3	1	-	10.972062758550651	4.0846428487464514	TGAATTGTTATTCC
chr5	178280105	178280106	chr5:178280106:T:A	rs72819062	T	A	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr5	178411637	178411638	chr5:178411638:T:C	rs4370295	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr5	178656974	178656975	chr5:178656975:T:C	rs7723335	T	C	t	Sox1.mouse_HMG_4	0	1	+	5.456047018236808	1.5544972710622076	TGGACAGACATTCA
chr5	178779282	178779283	chr5:178779283:A:T	rs112932045	A	T	.	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr5	178790754	178790755	chr5:178790755:T:C	rs11955306	T	C	t	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr5	179128766	179128767	chr5:179128767:G:A	rs35648285	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr5	179191481	179191482	chr5:179191482:T:C	rs140176256	T	C	C	Sox1.mouse_HMG_4	13	1	-	7.135057414035776	0.25231229805780675	GGAATAAAAATGCA
chr5	179191514	179191515	chr5:179191515:C:T	rs143835297	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr5	179380042	179380043	chr5:179380043:A:G	rs560137	A	G	G	Sox1.mouse_HMG_4	10	1	-	6.384012059762805	-0.4917570733614769	GGAATTGGCATGCA
chr5	179408370	179408371	chr5:179408371:C:T	rs62394876	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr5	179551822	179551823	chr5:179551823:A:G	rs113659866	A	G	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr5	179819783	179819784	chr5:179819784:C:G	rs58225020	C	G	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr5	180366377	180366378	chr5:180366378:A:G	rs114321626	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.13894624168726	1.41692942285986	GAAATGGACATTCA
chr5	180375314	180375315	chr5:180375315:C:T	rs10054008	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr5	180599671	180599672	chr5:180599672:C:G	rs10055319	C	G	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr5	181218206	181218207	chr5:181218207:A:G	rs13361510	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.758274358275627	-2.1504804210395934	TGAACGTTTATACA
chr5	181218210	181218211	chr5:181218211:T:C	rs13361994	T	C	T	Sox1.mouse_HMG_4	6	1	+	4.758274358275627	4.236060743035449	TGAACGTTTATACA
chr5	181218232	181218233	chr5:181218233:T:G	rs74505712	T	G	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr5	181233258	181233259	chr5:181233259:G:T	rs35032551	G	T	G	Sox1.mouse_HMG_4	12	1	-	4.554627179420923	-2.354127599894297	TGAACACACATCCA
chr6	188741	188742	chr6:188742:T:C	rs72821770	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.761409615269563	2.8598598680949623	TGAATTCTTAGGCA
chr6	188765	188766	chr6:188766:G:A	rs377331452	G	A	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	445085	445086	chr6:445086:T:G	rs112174937	T	G	T	Sox1.mouse_HMG_4	2	1	-	5.074832174895271	-1.8339226044199484	TCAACATCCATTCA
chr6	445093	445094	chr6:445094:T:C	rs73381056	T	C	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr6	452384	452385	chr6:452385:G:A	chr6:452385:G:A	G	A	G	Sox1.mouse_HMG_4	9	1	+	4.524456302581629	7.889277190084635	TGAATGGTTGGGCA
chr6	566508	566509	chr6:566509:G:A	rs17134857	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	675004	675005	chr6:675005:C:T	rs11757546	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	675013	675014	chr6:675014:C:A	rs11757548	C	A	C	Sox1.mouse_HMG_4	6	1	-	4.054025978127844	3.6464798894244863	GGAATGGCTAGGCA
chr6	715270	715271	chr6:715271:C:T	rs78164099	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr6	715281	715282	chr6:715282:G:T	rs2788222	G	T	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	1016748	1016749	chr6:1016749:G:A	rs10793858	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	1271147	1271148	chr6:1271148:A:G	rs2438075	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr6	1744845	1744846	chr6:1744846:G:C	rs742534	G	C	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	1796925	1796926	chr6:1796926:A:G	rs226456	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	1855937	1855938	chr6:1855938:C:T	rs3800097	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	1890328	1890329	chr6:1890329:C:T	rs35946812	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr6	1890376	1890377	chr6:1890377:C:A	rs74294073	C	A	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr6	2550590	2550591	chr6:2550591:A:T	rs1772963	A	T	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	2847308	2847309	chr6:2847309:A:C	rs9503315	A	C	A	Sox1.mouse_HMG_4	0	1	-	6.6645280744115185	3.0671897016399114	TGAATTCCCAGGCA
chr6	2847319	2847320	chr6:2847320:T:A	rs9503316	T	A	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	2962032	2962033	chr6:2962033:T:G	rs11552234	T	G	t	Sox1.mouse_HMG_4	7	1	-	6.643760357662046	6.670091603023867	TGAATTAAAAGTCC
chr6	2969043	2969044	chr6:2969044:C:T	rs73718779	C	T	t	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	3160241	3160242	chr6:3160242:T:C	rs561795454	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr6	3204444	3204445	chr6:3204445:C:A	rs4129374	C	A	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	3297616	3297617	chr6:3297617:G:A	rs72839352	G	A	G	Sox1.mouse_HMG_4	8	1	-	5.077487034108205	4.936455735781064	TGGATAGTCGTTCA
chr6	3429219	3429220	chr6:3429220:T:A	rs36052964	T	A	A	Sox1.mouse_HMG_4	9	1	-	5.074832174895271	-1.8009369582290107	TGAACATCCATTGA
chr6	3595287	3595288	chr6:3595288:A:C	rs1165877482	A	C	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	3869747	3869748	chr6:3869748:G:A	rs2490032	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	3869756	3869757	chr6:3869757:A:G	rs2490033	A	G	g	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr6	3996743	3996744	chr6:3996744:G:T	rs6597023	G	T	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	4212909	4212910	chr6:4212910:C:G	rs7761775	C	G	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr6	4287890	4287891	chr6:4287891:G:A	rs116493521	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	4447826	4447827	chr6:4447827:A:G	rs12207060	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	4449584	4449585	chr6:4449585:T:C	rs4959978	T	C	T	Sox1.mouse_HMG_4	11	1	+	6.5703832705904235	-0.31003164359714597	TGACTCTAAATTCA
chr6	4663640	4663641	chr6:4663641:A:C	rs666702	A	C	A	Sox1.mouse_HMG_4	2	1	+	9.95684627565152	3.0480914963362995	TGAATGAGTATGCA
chr6	4934444	4934445	chr6:4934445:G:A	rs1539003	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	5083904	5083905	chr6:5083905:T:C	rs6597110	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr6	5209012	5209013	chr6:5209013:T:C	rs143940413	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	5214749	5214750	chr6:5214750:T:G	rs4246073	T	G	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr6	5223560	5223561	chr6:5223561:C:G	rs4144009	C	G	G	Sox1.mouse_HMG_4	4	1	+	4.504620030274979	0.38055486660379834	TGAACAGGCATTAA
chr6	5294951	5294952	chr6:5294952:C:G	rs72815620	C	G	C	Sox1.mouse_HMG_4	8	1	+	4.9950964485740545	-1.0668964572234645	GGAACATACAGTCA
chr6	5320388	5320389	chr6:5320389:A:G	rs708036	A	G	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr6	5334357	5334358	chr6:5334358:A:G	rs11243004	A	G	A	Sox1.mouse_HMG_4	8	1	-	10.967410582434225	11.108441880761363	TGAATTGCTAGTCA
chr6	5538426	5538427	chr6:5538427:T:C	rs12206230	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	5816833	5816834	chr6:5816834:A:G	rs11757934	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.5705445512036	-2.3052245819206805	TGAGTAGCTATGCA
chr6	5948227	5948228	chr6:5948228:T:C	rs9392732	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	6040248	6040249	chr6:6040249:A:C	rs9504631	A	C	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	6098105	6098106	chr6:6098106:C:T	rs9504666	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr6	6098151	6098152	chr6:6098152:A:G	rs9504668	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	6316364	6316365	chr6:6316365:T:C	rs1267854	T	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr6	6316370	6316371	chr6:6316371:G:A	rs144819508	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr6	6500250	6500251	chr6:6500251:G:C	rs4141799	G	C	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr6	6652573	6652574	chr6:6652574:G:A	rs3789767	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	6699784	6699785	chr6:6699785:G:A	rs79367208	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	6798740	6798741	chr6:6798741:G:A	rs77057568	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr6	6807139	6807140	chr6:6807140:C:T	rs9502508	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	6807166	6807167	chr6:6807167:T:G	rs9504935	T	G	T	Sox1.mouse_HMG_4	10	1	+	7.37463266952852	4.009811782025513	TGACTATACATGCA
chr6	6822940	6822941	chr6:6822941:C:T	rs9504940	C	T	T	Sox1.mouse_HMG_4	8	1	+	5.193380799940676	5.052349501613536	TGAACGGACGGTCA
chr6	6879012	6879013	chr6:6879013:C:T	rs116364107	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	7084925	7084926	chr6:7084926:A:G	rs489905	A	G	a	Sox1.mouse_HMG_4	5	1	-	4.0290992351940265	1.1092708250649395	TGAAGTGCCATTCC
chr6	7280546	7280547	chr6:7280547:A:G	rs2764086	A	G	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	7332611	7332612	chr6:7332612:A:G	rs1325030	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	7504123	7504124	chr6:7504124:C:T	rs9379111	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr6	7567736	7567737	chr6:7567737:C:T	rs2076296	C	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	7680199	7680200	chr6:7680200:T:C	rs1407383	T	C	T	Sox1.mouse_HMG_4	9	1	-	7.391772442468872	4.026951554965865	TGAATGGATATGCC
chr6	7770277	7770278	chr6:7770278:T:C	rs140013431	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	7992234	7992235	chr6:7992235:T:A	rs79495890	T	A	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	8070451	8070452	chr6:8070452:G:T	rs73368485	G	T	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	8329200	8329201	chr6:8329201:A:C	rs2652854	A	C	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	8982834	8982835	chr6:8982835:C:T	rs751560959	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	9204430	9204431	chr6:9204431:G:A	rs942935794	G	A	G	Sox1.mouse_HMG_4	8	1	-	7.309743659193178	7.168712360866039	TGAATTTACGGTCA
chr6	9257417	9257418	chr6:9257418:C:T	rs10946404	C	T	C	Sox1.mouse_HMG_4	0	1	+	6.984280105832336	10.885829853006934	CGAATTACTAGTCA
chr6	9503571	9503572	chr6:9503572:C:T	rs9381386	C	T	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	9825396	9825397	chr6:9825397:C:T	rs10223573	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	9831098	9831099	chr6:9831099:T:A	rs1340638	T	A	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	10140756	10140757	chr6:10140757:T:C	rs111339662	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	10140783	10140784	chr6:10140784:T:C	rs6650997	T	C	T	Sox1.mouse_HMG_4	5	1	-	7.28439062893908	6.842611406333741	GGAATAAAAAGTCA
chr6	10210556	10210557	chr6:10210557:A:C	rs77472754	A	C	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr6	10224033	10224034	chr6:10224034:G:C	rs1333658	G	C	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	10957532	10957533	chr6:10957533:C:T	rs7745438	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	10962016	10962017	chr6:10962017:A:G	rs2295600	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	11212520	11212521	chr6:11212521:G:A	rs6912916	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr6	11356603	11356604	chr6:11356604:G:A	rs9468961	G	A	G	Sox1.mouse_HMG_4	0	1	+	5.8925385228939895	2.625634729015209	GGAATTTGCATTCC
chr6	11356615	11356616	chr6:11356616:C:T	rs6935281	C	T	T	Sox1.mouse_HMG_4	12	1	+	5.8925385228939895	-1.01621625642123	GGAATTTGCATTCC
chr6	11357721	11357722	chr6:11357722:A:C	rs56711429	A	C	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	11424099	11424100	chr6:11424100:T:A	rs35041358	T	A	T	Sox1.mouse_HMG_4	11	1	-	4.760002085261561	11.64041699944913	TGAATAAACAGACA
chr6	11479364	11479365	chr6:11479365:A:C	rs9366802	A	C	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	11529061	11529062	chr6:11529062:A:T	rs9366812	A	T	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	11647726	11647727	chr6:11647727:A:G	rs4713767	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr6	11650223	11650224	chr6:11650224:A:T	rs4141778	A	T	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	11650231	11650232	chr6:11650232:G:A	rs1150578	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr6	11650235	11650236	chr6:11650236:A:G	rs55885803	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr6	11688356	11688357	chr6:11688357:C:T	rs11759654	C	T	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr6	11688368	11688369	chr6:11688369:A:T	rs11752767	A	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	11694171	11694172	chr6:11694172:C:T	rs2142892	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	11854435	11854436	chr6:11854436:A:T	rs4713966	A	T	a	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr6	11854798	11854799	chr6:11854799:T:A	rs116884260	T	A	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr6	12001023	12001024	chr6:12001024:A:G	rs35209346	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	12234965	12234966	chr6:12234966:T:C	rs4490660	T	C	T	Sox1.mouse_HMG_4	5	1	+	10.966226706336709	8.046398296207622	TGAACTGAAATTCA
chr6	12419139	12419140	chr6:12419140:T:C	rs79246846	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr6	12482575	12482576	chr6:12482576:C:A	rs112557008	C	A	C	Sox1.mouse_HMG_4	12	1	+	6.836304699921235	-0.07245007939398573	TGAATGCACAGGCA
chr6	12601866	12601867	chr6:12601867:T:A	rs11968359	T	A	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	12695738	12695739	chr6:12695739:C:A	rs471799	C	A	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr6	12848736	12848737	chr6:12848737:T:G	rs9296486	T	G	T	Sox1.mouse_HMG_4	5	1	-	8.159155904453558	4.599440400847594	TGAAAAAACATTCA
chr6	13071973	13071974	chr6:13071974:T:C	rs35229766	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	13181180	13181181	chr6:13181181:C:T	rs1150610	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	13708685	13708686	chr6:13708686:T:C	rs6940759	T	C	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr6	13776123	13776124	chr6:13776124:T:A	rs66571901	T	A	t	Sox1.mouse_HMG_4	7	1	-	7.079015723098442	7.343259807645446	GGAACACAAATTCA
chr6	13843810	13843811	chr6:13843811:T:C	rs1204178	T	C	c	Sox1.mouse_HMG_4	10	1	+	4.727469535131863	-2.148299597992417	TGAACTGCTATTCT
chr6	14661431	14661432	chr6:14661432:C:G	rs73370140	C	G	C	Sox1.mouse_HMG_4	12	1	+	8.241292912310579	1.332538132995359	TGAACAGAAAGTCA
chr6	14712906	14712907	chr6:14712907:G:T	rs76399807	G	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr6	14818742	14818743	chr6:14818743:C:T	rs233488	C	T	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	14917478	14917479	chr6:14917479:A:G	rs365478	A	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr6	15249987	15249988	chr6:15249988:C:G	chr6:15249988:C:G	C	G	C	Sox1.mouse_HMG_4	1	1	-	4.555255769633033	-2.353499009682186	GGAATAACCAGGCA
chr6	15427309	15427310	chr6:15427310:G:C	rs145866306	G	C	G	Sox1.mouse_HMG_4	12	1	-	6.006255103901026	-0.9024996754141945	TGAATATGAAGTCC
chr6	16199988	16199989	chr6:16199989:G:C	rs2235213	G	C	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	16375930	16375931	chr6:16375931:A:T	rs2237218	A	T	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	16600447	16600448	chr6:16600448:T:C	rs1997716	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	16741084	16741085	chr6:16741085:A:G	rs16878941	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	16756774	16756775	chr6:16756775:A:G	rs631661	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	17120008	17120009	chr6:17120009:A:C	rs12203596	A	C	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	17299640	17299641	chr6:17299641:T:C	rs1341243	T	C	t	Sox1.mouse_HMG_4	6	1	+	6.882319835645393	6.360106220405215	TGAACATGAAGTCA
chr6	17464455	17464456	chr6:17464456:A:G	rs9383287	A	G	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	17469789	17469790	chr6:17469790:C:T	rs974963968	C	T	c	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	17536355	17536356	chr6:17536356:T:C	rs114130778	T	C	T	Sox1.mouse_HMG_4	9	1	-	6.505169026198213	3.140348138695206	TCAATTAGCATTCA
chr6	17843586	17843587	chr6:17843587:C:A	rs899388754	C	A	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr6	18186896	18186897	chr6:18186897:A:G	rs1748135	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr6	18266863	18266864	chr6:18266864:C:T	rs214568	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	18327071	18327072	chr6:18327072:C:T	rs2328238	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	18327073	18327074	chr6:18327074:G:A	rs2328239	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr6	18424348	18424349	chr6:18424349:A:G	rs16880665	A	G	A	Sox1.mouse_HMG_4	9	1	+	10.813976516234675	7.449155628731667	TGAATAGAAATGCA
chr6	18424369	18424370	chr6:18424370:A:G	rs1319785	A	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	18486630	18486631	chr6:18486631:C:T	rs9383398	C	T	T	Sox1.mouse_HMG_4	13	1	+	4.561074353881792	1.2764107884755882	TGAAAAAACATTCC
chr6	18748356	18748357	chr6:18748357:G:A	rs12212903	G	A	G	Sox1.mouse_HMG_4	4	1	-	5.137480581851333	7.859497400678732	TAAACGGTTATTCA
chr6	19035803	19035804	chr6:19035804:T:C	rs72828517	T	C	T	Sox1.mouse_HMG_4	10	1	-	8.129468753827856	11.64041699944913	TGAATAAACAATCA
chr6	19175603	19175604	chr6:19175604:T:C	rs1007239	T	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr6	19426159	19426160	chr6:19426160:A:T	rs9358221	A	T	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	20038467	20038468	chr6:20038468:G:A	rs1374308452	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.56450798894915	7.802420828134335	TGAATTGCCATTTA
chr6	20126223	20126224	chr6:20126224:C:G	rs139889267	C	G	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	20131267	20131268	chr6:20131268:C:G	rs34263705	C	G	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	20186683	20186684	chr6:20186684:G:A	rs10946368	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	20253160	20253161	chr6:20253161:C:A	rs11753226	C	A	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr6	20499336	20499337	chr6:20499337:A:G	rs74292477	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	20720047	20720048	chr6:20720048:T:C	rs9356746	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	20876381	20876382	chr6:20876382:G:A	rs4077404	G	A	G	Sox1.mouse_HMG_4	7	1	-	4.023234529805263	4.261147368990446	TGAATGTCCTGTCA
chr6	21005949	21005950	chr6:21005950:C:T	rs73379547	C	T	c	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	21005957	21005958	chr6:21005958:A:G	rs143747302	A	G	A	Sox1.mouse_HMG_4	5	1	+	7.512548217667676	7.070768995062338	TGTATACTCATTCA
chr6	21005966	21005967	chr6:21005967:A:G	rs180725174	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	21123756	21123757	chr6:21123757:A:G	rs4479917	A	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr6	21245737	21245738	chr6:21245738:A:G	rs2045546	A	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	21381802	21381803	chr6:21381803:C:T	rs77404389	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.0290992351940265	-2.879655544121194	TGAAATGCCATTCC
chr6	21778480	21778481	chr6:21778481:A:G	rs11759433	A	G	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	21891344	21891345	chr6:21891345:C:T	rs78432519	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.221264605824139	-2.6874901734910814	CGGATAACCATTCA
chr6	21914106	21914107	chr6:21914107:C:T	rs10946486	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	21947969	21947970	chr6:21947970:A:G	rs7765259	A	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	21947975	21947976	chr6:21947976:T:C	rs10946491	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	21960205	21960206	chr6:21960206:G:C	rs12212174	G	C	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	21997696	21997697	chr6:21997697:G:A	rs2078482	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	22254500	22254501	chr6:22254501:G:A	rs2066268	G	A	G	Sox1.mouse_HMG_4	4	1	-	7.34251662984529	10.06453344867269	TGAACACTAATTCC
chr6	22477088	22477089	chr6:22477089:C:G	rs112320701	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	22477134	22477135	chr6:22477135:T:C	rs16886245	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr6	22477159	22477160	chr6:22477160:C:T	rs12175390	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	22513778	22513779	chr6:22513779:G:A	rs16886351	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	22786141	22786142	chr6:22786142:G:A	rs146251719	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	22786149	22786150	chr6:22786150:A:C	rs1474662	A	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr6	23180766	23180767	chr6:23180767:G:A	rs62399101	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	23334625	23334626	chr6:23334626:T:G	rs17208780	T	G	T	Sox1.mouse_HMG_4	3	1	-	7.103754641253277	3.313268885512038	TGAATGCTCACTCA
chr6	23505096	23505097	chr6:23505097:T:C	rs12660285	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr6	23583744	23583745	chr6:23583745:T:C	rs6456556	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	23649183	23649184	chr6:23649184:A:G	rs74792762	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	24141691	24141692	chr6:24141692:G:A	rs10946675	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.9988232798796455	-1.9099314994355747	TGGACTATCATTCA
chr6	24237030	24237031	chr6:24237031:A:C	rs1087288	A	C	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	24237060	24237061	chr6:24237061:C:G	rs1087287	C	G	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr6	24451027	24451028	chr6:24451028:G:A	rs6456614	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr6	24918119	24918120	chr6:24918120:C:G	rs62402041	C	G	c	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	25086729	25086730	chr6:25086730:T:C	rs74411444	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	25086739	25086740	chr6:25086740:G:A	rs895673	G	A	g	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	25095243	25095244	chr6:25095244:G:A	rs9467395	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr6	25178878	25178879	chr6:25178879:C:T	rs13198544	C	T	c	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	25222547	25222548	chr6:25222548:T:C	rs80350013	T	C	T	Sox1.mouse_HMG_4	13	1	-	7.685597484801432	0.802852368823463	TGAATATCTGTGCA
chr6	25720532	25720533	chr6:25720533:T:C	rs4481423	T	C	C	Sox1.mouse_HMG_4	10	1	+	6.7276878058275	-0.14808132729678047	TGAATTAAAGTGCA
chr6	25875860	25875861	chr6:25875861:A:G	rs12664474	A	G	a	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr6	26065969	26065970	chr6:26065970:A:G	rs9393683	A	G	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	26068337	26068338	chr6:26068338:G:A	rs9358904	G	A	G	Sox1.mouse_HMG_4	8	1	-	7.837703720836884	7.696672422509744	GGAACACACATTCA
chr6	26071039	26071040	chr6:26071040:C:T	rs78929194	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	26127354	26127355	chr6:26127355:G:T	rs182332087	G	T	G	Sox1.mouse_HMG_4	12	1	-	6.824001358513717	-0.08475342080150328	AGAATTGAAATTCA
chr6	26183424	26183425	chr6:26183425:G:A	chr6:26183425:G:A	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr6	26354235	26354236	chr6:26354236:G:A	rs36085954	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	26354253	26354254	chr6:26354254:G:C	rs115467673	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr6	27062858	27062859	chr6:27062859:C:T	rs73401117	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	27865107	27865108	chr6:27865108:C:T	rs765938271	C	T	C	Sox1.mouse_HMG_4	6	1	+	6.224680755597969	6.746894370838147	CGAATTCTTATGCA
chr6	27898123	27898124	chr6:27898124:A:T	rs66868086	A	T	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr6	28977890	28977891	chr6:28977891:T:G	rs113439016	T	G	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	29509495	29509496	chr6:29509496:A:C	rs1557819	A	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr6	29682353	29682354	chr6:29682354:A:G	rs17435027	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.023234529805263	1.3012177109778642	TGAATGTCCTGTCA
chr6	29709034	29709035	chr6:29709035:A:C	rs148101203	A	C	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	29709045	29709046	chr6:29709046:C:T	rs7762253	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	29739272	29739273	chr6:29739273:G:A	rs4713239	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr6	29742850	29742851	chr6:29742851:G:A	rs730858	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	29797674	29797675	chr6:29797675:G:T	rs9461556	G	T	-	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	29891843	29891844	chr6:29891844:T:C	rs9259300	T	C	-	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr6	29942938	29942939	chr6:29942939:C:G	rs1059455	C	G	-	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr6	29942947	29942948	chr6:29942948:C:G	rs199474430	C	G	-	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	29942953	29942954	chr6:29942954:G:A	rs79361534	G	A	-	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr6	29942964	29942965	chr6:29942965:G:C	rs78306866	G	C	-	Sox1.mouse_HMG_4	10	1	+	3.5307080651907876	0.019759819569513004	TGAAGGCCCAGTCA
chr6	29942972	29942973	chr6:29942973:C:T	rs199474457	C	T	-	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	29942974	29942975	chr6:29942975:G:C	rs1136683	G	C	-	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr6	29942981	29942982	chr6:29942982:T:A	chr6:29942982:T:A	T	A	-	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	29942981	29942982	chr6:29942982:T:C	rs1071742	T	C	-	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	29946621	29946622	chr6:29946622:G:A	rs2975047	G	A	-	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	29946634	29946635	chr6:29946635:A:G	rs3016022	A	G	-	Sox1.mouse_HMG_4	2	1	+	5.3340798835914764	-1.5746748957237424	TGATCATTCATTCA
chr6	29954102	29954103	chr6:29954103:T:G	rs9260565	T	G	-	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	29964758	29964759	chr6:29964759:A:T	rs9501312	A	T	-	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	29991224	29991225	chr6:29991225:C:T	rs184668494	C	T	c	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	30061565	30061566	chr6:30061566:G:T	rs17187658	G	T	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	30113468	30113469	chr6:30113469:C:T	rs2523986	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr6	30721328	30721329	chr6:30721329:G:T	rs115094622	G	T	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr6	30800254	30800255	chr6:30800255:A:G	rs62408709	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.072063772531607	3.350046953704208	TGACTAGGAATGCA
chr6	30827475	30827476	chr6:30827476:G:A	rs115518483	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr6	30854816	30854817	chr6:30854817:T:A	rs6936364	T	A	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	30974560	30974561	chr6:30974561:T:C	rs2844687	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr6	31068659	31068660	chr6:31068660:C:G	rs73403451	C	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	31068670	31068671	chr6:31068671:A:G	rs151043785	A	G	A	Sox1.mouse_HMG_4	10	1	-	6.782200085056885	-0.09356904806739696	TGAATACTAATCCA
chr6	31109954	31109955	chr6:31109955:C:G	rs1265064	C	G	G	Sox1.mouse_HMG_4	12	1	+	7.337266136203562	0.4285113568883412	GGAATGACTATGCA
chr6	31353152	31353153	chr6:31353153:C:G	rs77616974	C	G	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr6	31560723	31560724	chr6:31560724:T:C	rs146385096	T	C	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	31660110	31660111	chr6:31660111:T:C	rs539538086	T	C	T	Sox1.mouse_HMG_4	4	1	+	11.836908598520122	9.114891779692723	TGAATAGTCATGCA
chr6	32178714	32178715	chr6:32178715:C:A	rs3134945	C	A	C	Sox1.mouse_HMG_4	0	1	+	4.487517310136973	1.5248248906611817	CGAATAATCATACA
chr6	32482142	32482143	chr6:32482143:T:C	rs111925095	T	C	.	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr6	32482154	32482155	chr6:32482155:A:G	rs34867634	A	G	.	Sox1.mouse_HMG_4	6	1	-	10.987583287211422	10.465369671971247	TGAATGTTCATGCA
chr6	32482157	32482158	chr6:32482158:T:G	rs35429512	T	G	.	Sox1.mouse_HMG_4	3	1	-	10.987583287211422	7.197097531470185	TGAATGTTCATGCA
chr6	32558865	32558866	chr6:32558866:A:G	rs116149836	A	G	.	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr6	32586096	32586097	chr6:32586097:T:C	rs9270055	T	C	.	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr6	32622319	32622320	chr6:32622320:A:T	rs9271543	A	T	.	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr6	32622342	32622343	chr6:32622343:C:A	rs9271544	C	A	.	Sox1.mouse_HMG_4	7	1	-	9.840319134207272	11.055990206716103	TGAATTGGTATGCA
chr6	32622349	32622350	chr6:32622350:A:T	rs140056247	A	T	.	Sox1.mouse_HMG_4	0	1	-	9.840319134207272	2.9760769675568817	TGAATTGGTATGCA
chr6	32635748	32635749	chr6:32635749:A:T	rs9272271	A	T	.	Sox1.mouse_HMG_4	0	1	-	10.61470288687455	3.7504607202241607	TGAATGCTCAGTCA
chr6	32635752	32635753	chr6:32635753:G:A	rs9272272	G	A	.	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	32687347	32687348	chr6:32687348:T:A	rs28747031	T	A	t	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	32690532	32690533	chr6:32690533:G:A	rs9469220	G	A	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr6	32834231	32834232	chr6:32834232:C:T	rs62397687	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	32881111	32881112	chr6:32881112:T:C	rs9276901	T	C	T	Sox1.mouse_HMG_4	5	1	-	5.292751882035138	4.850972659429799	TGAACAACTTTTCA
chr6	32943099	32943100	chr6:32943100:G:A	rs16871169	G	A	G	Sox1.mouse_HMG_4	5	1	+	4.281911043254848	4.723690265860186	TAAACGGCAATTCA
chr6	33077920	33077921	chr6:33077921:G:A	rs7750458	G	A	G	Sox1.mouse_HMG_4	7	1	+	6.860089441579819	7.811516429541647	TGAACTTGTAGTCA
chr6	33082103	33082104	chr6:33082104:T:G	rs112104961	T	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr6	33114020	33114021	chr6:33114021:C:T	rs7744381	C	T	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr6	33114045	33114046	chr6:33114046:A:G	rs9277626	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	33703428	33703429	chr6:33703429:T:C	rs6929190	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr6	33817220	33817221	chr6:33817221:G:C	rs4607416	G	C	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	33852145	33852146	chr6:33852146:G:A	rs536793017	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr6	33868913	33868914	chr6:33868914:A:G	rs4713704	A	G	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	33868954	33868955	chr6:33868955:A:G	rs942498	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	33895077	33895078	chr6:33895078:C:G	rs3823428	C	G	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr6	33981577	33981578	chr6:33981578:T:C	rs2495981	T	C	T	Sox1.mouse_HMG_4	7	1	+	7.458103814677348	7.220190975492166	TGAACTTTAAGTCA
chr6	34291855	34291856	chr6:34291856:G:A	rs55684754	G	A	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	34341761	34341762	chr6:34341762:G:C	rs78744174	G	C	G	Sox1.mouse_HMG_4	12	1	-	7.983791674437428	1.0750368951222071	TGAATAAATATACA
chr6	34790938	34790939	chr6:34790939:A:T	rs9469885	A	T	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr6	34926500	34926501	chr6:34926501:C:T	rs76564522	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr6	35218265	35218266	chr6:35218266:G:A	rs77478772	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	35345570	35345571	chr6:35345571:G:C	rs13362808	G	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	35368524	35368525	chr6:35368525:G:A	rs73745201	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	35798432	35798433	chr6:35798433:C:T	rs72925892	C	T	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr6	35917831	35917832	chr6:35917832:C:T	rs661658	C	T	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	35919378	35919379	chr6:35919379:C:G	rs117080853	C	G	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr6	36388572	36388573	chr6:36388573:G:C	rs62403725	G	C	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	36617024	36617025	chr6:36617025:T:C	rs1459995193	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr6	36639585	36639586	chr6:36639586:G:C	chr6:36639586:G:C	G	C	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr6	36699007	36699008	chr6:36699008:C:T	rs143746499	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr6	36789488	36789489	chr6:36789489:T:G	rs958423	T	G	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr6	36861179	36861180	chr6:36861180:T:C	rs7745555	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	36886916	36886917	chr6:36886917:A:G	rs9357229	A	G	A	Sox1.mouse_HMG_4	0	1	-	5.155932103959564	1.2543823567849641	TGAACCTTTAGTCA
chr6	36997322	36997323	chr6:36997323:C:T	rs6930271	C	T	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	37334528	37334529	chr6:37334529:T:C	rs9368993	T	C	T	Sox1.mouse_HMG_4	2	1	-	6.8855335550749	-0.023221224240320915	TGAACACGCATTCC
chr6	37347735	37347736	chr6:37347736:T:C	rs195397	T	C	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	37403125	37403126	chr6:37403126:T:G	rs9470580	T	G	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr6	37684953	37684954	chr6:37684954:T:C	rs7760531	T	C	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	37994850	37994851	chr6:37994851:C:A	rs527578598	C	A	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr6	38119902	38119903	chr6:38119903:C:A	rs11759483	C	A	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	38119908	38119909	chr6:38119909:G:A	rs73730893	G	A	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	38612256	38612257	chr6:38612257:G:A	rs183189880	G	A	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr6	39021565	39021566	chr6:39021566:G:A	rs2235870	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	39088291	39088292	chr6:39088292:C:T	rs184905666	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	39215753	39215754	chr6:39215754:C:A	rs11969389	C	A	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	39559090	39559091	chr6:39559091:A:G	rs1520	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr6	39559118	39559119	chr6:39559119:T:C	rs6458117	T	C	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	39657834	39657835	chr6:39657835:G:T	rs2465672	G	T	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr6	40199758	40199759	chr6:40199759:G:A	rs9380935	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	40350128	40350129	chr6:40350129:T:G	rs72859132	T	G	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr6	40350166	40350167	chr6:40350167:A:G	rs116693538	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr6	40542273	40542274	chr6:40542274:G:A	rs115628240	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	40871502	40871503	chr6:40871503:C:T	rs73421155	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	40871526	40871527	chr6:40871527:T:A	rs12199776	T	A	T	Sox1.mouse_HMG_4	9	1	-	6.174573841930984	-0.7011952911932975	GGAATGTGCATGCA
chr6	41285588	41285589	chr6:41285589:G:C	rs3827632	G	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	41615254	41615255	chr6:41615255:G:A	rs61515484	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	41709143	41709144	chr6:41709144:T:C	rs6930504	T	C	C	Sox1.mouse_HMG_4	9	1	-	7.684483674437481	4.319662786934474	TGAATGAACAGGCA
chr6	41723387	41723388	chr6:41723388:C:A	rs73733005	C	A	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	42180941	42180942	chr6:42180942:C:G	rs9632492	C	G	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr6	42339941	42339942	chr6:42339942:A:G	rs1286353666	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr6	42704677	42704678	chr6:42704678:A:T	rs3818086	A	T	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	42704695	42704696	chr6:42704696:C:T	rs34722725	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	42709428	42709429	chr6:42709429:A:G	rs9471908	A	G	A	Sox1.mouse_HMG_4	2	1	+	7.791126944177559	0.8823721648623366	TGACCTTTCATTCA
chr6	42784644	42784645	chr6:42784645:C:T	rs148766103	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr6	43427128	43427129	chr6:43427129:G:C	rs116655027	G	C	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr6	43688407	43688408	chr6:43688408:A:G	rs779885271	A	G	A	Sox1.mouse_HMG_4	4	1	-	3.4645493516588637	0.7425325328314647	AGAATGGGCAGTCA
chr6	43974651	43974652	chr6:43974652:T:C	rs4714729	T	C	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	44497288	44497289	chr6:44497289:G:A	chr6:44497289:G:A	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	44720219	44720220	chr6:44720220:T:C	rs10948155	T	C	T	Sox1.mouse_HMG_4	11	1	+	8.12465935610481	1.2442444419172423	GGAATAGACAGTCA
chr6	44869794	44869795	chr6:44869795:A:G	rs3799978	A	G	A	Sox1.mouse_HMG_4	9	1	+	8.107876396763718	4.743055509260712	AGAATAGCTATTCA
chr6	44967603	44967604	chr6:44967604:C:T	rs636845	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr6	45432656	45432657	chr6:45432657:A:G	rs2819855	A	G	A	Sox1.mouse_HMG_4	3	1	+	10.456312110502788	3.568892200698591	TGAATCCATATTCA
chr6	45563361	45563362	chr6:45563362:T:A	rs1048603349	T	A	T	Sox1.mouse_HMG_4	3	1	-	7.608148665507556	0.7207287557033581	TGAATTATTATCCA
chr6	45637484	45637485	chr6:45637485:C:A	rs9472531	C	A	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	45691289	45691290	chr6:45691290:T:C	rs9395111	T	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	45880790	45880791	chr6:45880791:A:G	rs999646704	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr6	46201816	46201817	chr6:46201817:C:T	rs112038048	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr6	46216534	46216535	chr6:46216535:T:C	rs6458497	T	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr6	46411155	46411156	chr6:46411156:T:A	rs4314488	T	A	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr6	46500880	46500881	chr6:46500881:C:T	rs62402434	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	46735775	46735776	chr6:46735776:A:G	rs1421378	A	G	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr6	46748341	46748342	chr6:46748342:A:G	rs1362932	A	G	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr6	47039410	47039411	chr6:47039411:T:A	rs79473919	T	A	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	47246055	47246056	chr6:47246056:T:C	rs142984874	T	C	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	47246083	47246084	chr6:47246084:G:A	rs4327692	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	47673038	47673039	chr6:47673039:T:C	rs868881	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	47922676	47922677	chr6:47922677:T:C	rs16869230	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr6	48432929	48432930	chr6:48432930:A:T	rs10456583	A	T	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	48657696	48657697	chr6:48657697:T:G	rs6931059	T	G	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	48735950	48735951	chr6:48735951:T:C	rs12190767	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	49665635	49665636	chr6:49665636:G:A	rs10948522	G	A	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	49665676	49665677	chr6:49665677:G:A	rs11759936	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	49748209	49748210	chr6:49748210:A:G	rs13219640	A	G	A	Sox1.mouse_HMG_4	9	1	+	9.264224994596026	5.899404107093019	TGAACAGTCAGTCA
chr6	50190116	50190117	chr6:50190117:C:G	rs72868533	C	G	C	Sox1.mouse_HMG_4	4	1	+	5.456047018236808	1.3319818545656255	TAAACAGACATTCA
chr6	50987367	50987368	chr6:50987368:C:T	rs11759809	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr6	51495317	51495318	chr6:51495318:A:G	rs1313198352	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	51505602	51505603	chr6:51505603:C:A	rs6902943	C	A	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	51791752	51791753	chr6:51791753:G:A	rs2104522	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	52305121	52305122	chr6:52305122:T:G	rs111233681	T	G	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	52512363	52512364	chr6:52512364:C:T	rs117419239	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.300922112357778	0.3921673330425577	TGAATGTCCAGTCC
chr6	52641780	52641781	chr6:52641781:A:G	rs59192013	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	53142928	53142929	chr6:53142929:G:A	rs11759714	G	A	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	53217821	53217822	chr6:53217822:T:G	rs2816373	T	G	G	Sox1.mouse_HMG_4	4	1	+	7.370780756089414	0.5246987735908333	TGAATAAAATTTCA
chr6	53497047	53497048	chr6:53497048:C:A	rs12525736	C	A	C	Sox1.mouse_HMG_4	8	1	+	5.312745014080454	4.554057016342011	TCAACATTCATTCA
chr6	53615494	53615495	chr6:53615495:T:C	rs11962209	T	C	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr6	53615520	53615521	chr6:53615521:A:G	rs482579	A	G	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	53624155	53624156	chr6:53624156:G:A	rs12192938	G	A	G	Sox1.mouse_HMG_4	0	1	-	6.281784605759654	10.183334352934255	CGAATTCTCATTCC
chr6	53648670	53648671	chr6:53648671:A:G	rs9474613	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr6	53796976	53796977	chr6:53796977:T:C	rs35971619	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	53805195	53805196	chr6:53805196:A:G	rs3000998	A	G	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	54021119	54021120	chr6:54021120:C:T	rs1570912	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	54095851	54095852	chr6:54095852:A:T	rs145678375	A	T	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	54316162	54316163	chr6:54316163:G:A	rs3777654	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr6	54580355	54580356	chr6:54580356:G:A	rs9367586	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr6	54641748	54641749	chr6:54641749:A:G	rs7775692	A	G	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr6	55014084	55014085	chr6:55014085:G:A	rs4283890	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr6	55064940	55064941	chr6:55064941:G:A	rs115488068	G	A	G	Sox1.mouse_HMG_4	0	1	+	4.226417324873749	0.9595135309949658	GGAGTTGTCATTCA
chr6	55141842	55141843	chr6:55141843:C:T	rs4515389	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	55277019	55277020	chr6:55277020:G:C	rs138355882	G	C	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	55277058	55277059	chr6:55277059:G:A	rs1218364985	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	55388470	55388471	chr6:55388471:A:G	rs116945973	A	G	A	Sox1.mouse_HMG_4	9	1	+	11.004856971104786	7.640036083601781	TGAATCTCTATTCA
chr6	55719719	55719720	chr6:55719720:G:A	rs6922636	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	55794806	55794807	chr6:55794807:T:C	rs116491220	T	C	t	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr6	55885738	55885739	chr6:55885739:A:C	rs6926331	A	C	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	55975024	55975025	chr6:55975025:T:G	rs2745741	T	G	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	56022226	56022227	chr6:56022227:A:C	rs6933744	A	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	56148888	56148889	chr6:56148889:C:T	rs539032693	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	56613301	56613302	chr6:56613302:C:G	rs9357927	C	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	56684254	56684255	chr6:56684255:T:C	rs71564848	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	56903091	56903092	chr6:56903092:C:G	chr6:56903092:C:G	C	G	C	Sox1.mouse_HMG_4	7	1	-	9.14108170536868	10.118839938692327	TGAATTAGAATGCA
chr6	56903097	56903098	chr6:56903098:C:T	rs76889735	C	T	C	Sox1.mouse_HMG_4	1	1	-	9.14108170536868	2.232326926053459	TGAATTAGAATGCA
chr6	56903105	56903106	chr6:56903106:T:C	rs895153480	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	57227276	57227277	chr6:57227277:C:A	rs9475793	C	A	c	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	61584176	61584177	chr6:61584177:T:C	rs1117274	T	C	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	61869058	61869059	chr6:61869059:A:G	rs62414690	A	G	A	Sox1.mouse_HMG_4	0	1	-	7.543452376110341	3.6419026289357417	TGAATGAATGTGCA
chr6	63011943	63011944	chr6:63011944:C:T	rs4710395	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr6	63323142	63323143	chr6:63323143:G:A	rs824372	G	A	G	Sox1.mouse_HMG_4	1	1	+	5.905840076673077	-1.0029147026421434	TGAATTCCAAGGCA
chr6	63346616	63346617	chr6:63346617:G:A	rs62414978	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	63899878	63899879	chr6:63899879:G:A	rs116178991	G	A	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr6	64489993	64489994	chr6:64489994:G:T	rs13193668	G	T	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	64672184	64672185	chr6:64672185:C:T	rs7738056	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	65576162	65576163	chr6:65576163:C:G	rs354346	C	G	G	Sox1.mouse_HMG_4	8	1	+	5.078280718939352	-0.9837121868581657	TGAACATACGTGCA
chr6	66214949	66214950	chr6:66214950:C:A	rs2078903	C	A	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	66931016	66931017	chr6:66931017:C:T	rs75525399	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	67127901	67127902	chr6:67127902:G:A	rs2444612	G	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	67152858	67152859	chr6:67152859:T:G	rs62418714	T	G	t	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr6	67433447	67433448	chr6:67433448:C:T	rs9445872	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	67796607	67796608	chr6:67796608:A:G	rs9454287	A	G	G	Sox1.mouse_HMG_4	4	1	-	11.407899514180528	8.68588269535313	GGAATAAACATTCA
chr6	67797888	67797889	chr6:67797889:G:A	chr6:67797889:G:A	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr6	67889937	67889938	chr6:67889938:C:G	rs73744784	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	67982188	67982189	chr6:67982189:T:C	rs12212405	T	C	T	Sox1.mouse_HMG_4	8	1	+	8.544851397025989	8.68588269535313	GGAACAAATATTCA
chr6	68238424	68238425	chr6:68238425:G:A	rs73458736	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	69620077	69620078	chr6:69620078:C:T	rs12110750	C	T	C	Sox1.mouse_HMG_4	7	1	+	7.482927259521862	7.720840098707044	TTAATTACCATTCA
chr6	69937006	69937007	chr6:69937007:T:G	rs116629691	T	G	T	Sox1.mouse_HMG_4	11	1	+	3.774022233207912	0.25986813080160176	TGTCTTGCCATTCA
chr6	70231118	70231119	chr6:70231119:T:C	rs544179	T	C	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	70397306	70397307	chr6:70397307:A:G	rs3846748	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	70957411	70957412	chr6:70957412:T:C	rs75634682	T	C	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	70971939	70971940	chr6:70971940:A:C	chr6:70971940:A:C	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr6	71169005	71169006	chr6:71169006:G:A	rs9364135	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	71198288	71198289	chr6:71198289:A:G	rs79367580	A	G	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr6	71250462	71250463	chr6:71250463:A:T	rs185359730	A	T	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr6	72213647	72213648	chr6:72213648:G:A	rs55970804	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	72220728	72220729	chr6:72220729:G:A	rs72939734	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr6	72321836	72321837	chr6:72321837:A:T	rs565201834	A	T	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr6	72554269	72554270	chr6:72554270:G:A	rs76289137	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr6	72647090	72647091	chr6:72647091:C:T	rs9342961	C	T	T	Sox1.mouse_HMG_4	1	1	-	10.908273263613346	3.999518484298127	TGAATGAATATGCA
chr6	72941866	72941867	chr6:72941867:G:A	rs141848886	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr6	73143646	73143647	chr6:73143647:T:A	rs6911409	T	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	73181453	73181454	chr6:73181454:T:C	rs2350385	T	C	t	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	73676179	73676180	chr6:73676180:C:T	rs79393101	C	T	C	Sox1.mouse_HMG_4	12	1	+	6.619735401816441	-0.28901937749878015	TGAATTGGCTTTCA
chr6	73781139	73781140	chr6:73781140:T:A	rs7762433	T	A	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr6	74152547	74152548	chr6:74152548:G:C	rs6933348	G	C	C	Sox1.mouse_HMG_4	8	1	-	4.790531398840277	-1.2714615069572412	TAAACACTCATTCA
chr6	74454879	74454880	chr6:74454880:C:T	rs9360797	C	T	C	Sox1.mouse_HMG_4	5	1	-	4.932687066204179	5.374466288809519	TGAACGAACATTTA
chr6	75816185	75816186	chr6:75816186:T:A	rs999209	T	A	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	76508032	76508033	chr6:76508033:G:C	rs9447718	G	C	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	76552402	76552403	chr6:76552403:A:G	rs72892543	A	G	A	Sox1.mouse_HMG_4	3	1	+	6.764615472054599	-0.12280443774959893	TGAATTCTTAATCA
chr6	76702560	76702561	chr6:76702561:C:A	rs2219409	C	A	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	77356967	77356968	chr6:77356968:G:A	rs1539580	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr6	77415944	77415945	chr6:77415945:C:T	rs1777766	C	T	T	Sox1.mouse_HMG_4	1	1	-	4.006562069601778	-2.902192709713443	TGACTGGTCATGCC
chr6	77783804	77783805	chr6:77783805:A:G	rs1398578	A	G	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	77810295	77810296	chr6:77810296:C:T	rs16889431	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr6	78460851	78460852	chr6:78460852:C:G	rs9448439	C	G	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr6	78606149	78606150	chr6:78606150:T:A	rs1359159289	T	A	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	79150159	79150160	chr6:79150160:A:G	rs9352701	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	79240715	79240716	chr6:79240716:C:A	rs148295210	C	A	C	Sox1.mouse_HMG_4	4	1	+	8.070221206105485	3.946156042434305	TGAACACACAGTCA
chr6	79261452	79261453	chr6:79261453:G:T	rs7770245	G	T	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	79422574	79422575	chr6:79422575:G:A	rs16890720	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	79574136	79574137	chr6:79574137:T:A	rs2812694	T	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	79616203	79616204	chr6:79616204:C:T	rs72903773	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	79763477	79763478	chr6:79763478:C:T	rs6936113	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	79763504	79763505	chr6:79763505:G:C	rs6936431	G	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	79862334	79862335	chr6:79862335:G:A	rs73747485	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	79870219	79870220	chr6:79870220:A:G	rs59710738	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	79949075	79949076	chr6:79949076:A:C	rs1512120	A	C	A	Sox1.mouse_HMG_4	3	1	+	7.274635378482493	3.4841496227412536	TAAATACCCATTCA
chr6	79949100	79949101	chr6:79949101:C:A	rs527950344	C	A	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	79969725	79969726	chr6:79969726:G:A	rs115896934	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr6	80005445	80005446	chr6:80005446:G:A	rs9341801	G	A	G	Sox1.mouse_HMG_4	1	1	+	7.374724385779041	0.46596960646382124	GGAATTGTTATTCC
chr6	80005474	80005475	chr6:80005475:C:A	rs240229	C	A	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	80153291	80153292	chr6:80153292:T:C	rs144162734	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr6	80212380	80212381	chr6:80212381:G:A	rs9359411	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr6	80212396	80212397	chr6:80212397:G:A	rs112498803	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.222130512052558	-2.686624267262663	TAAATGGACATGCA
chr6	80291105	80291106	chr6:80291106:T:C	rs9448917	T	C	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	80291119	80291120	chr6:80291120:G:T	rs9443738	G	T	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr6	80351341	80351342	chr6:80351342:G:C	rs9448933	G	C	G	Sox1.mouse_HMG_4	1	1	+	7.557060830332506	0.6483060510172856	AGAATACTCATTCA
chr6	80351367	80351368	chr6:80351368:G:A	rs117923064	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	80579672	80579673	chr6:80579673:A:G	rs1454465	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr6	80652601	80652602	chr6:80652602:A:G	rs2444810	A	G	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr6	81131328	81131329	chr6:81131329:T:A	rs9361751	T	A	A	Sox1.mouse_HMG_4	9	1	-	4.75347005526609	-2.122299077858191	TGAACAGCAAGGCA
chr6	81910223	81910224	chr6:81910224:T:C	rs57037663	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	81998541	81998542	chr6:81998542:C:T	rs185456504	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr6	82015671	82015672	chr6:82015672:T:C	rs4706918	T	C	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	82015694	82015695	chr6:82015695:C:T	rs9350942	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr6	82248528	82248529	chr6:82248529:A:G	rs9294254	A	G	A	Sox1.mouse_HMG_4	11	1	-	5.638710373356521	-1.2417045408310472	TGAACAATCATTTA
chr6	82429860	82429861	chr6:82429861:C:T	rs12211085	C	T	C	Sox1.mouse_HMG_4	10	1	-	3.5307080651907876	0.019759819569513004	TGAAGGCCCAGTCA
chr6	82699998	82699999	chr6:82699999:T:C	rs187315238	T	C	T	Sox1.mouse_HMG_4	7	1	-	7.140258480984471	6.188831493022644	TGAATACATACTCA
chr6	83265809	83265810	chr6:83265810:C:T	rs34326691	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr6	83854355	83854356	chr6:83854356:G:A	rs2298288	G	A	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr6	84027222	84027223	chr6:84027223:C:T	rs4707032	C	T	C	Sox1.mouse_HMG_4	11	1	-	7.659266239439612	4.293005427658353	TGAATATATGTGCA
chr6	84220926	84220927	chr6:84220927:T:C	rs760192708	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.43013109145113	0.5427111816469321	TGAATTGATTTTCA
chr6	84411501	84411502	chr6:84411502:T:G	chr6:84411502:T:G	T	G	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	84870745	84870746	chr6:84870746:T:C	rs13199517	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr6	85127280	85127281	chr6:85127281:C:T	chr6:85127281:C:T	C	T	c	Sox1.mouse_HMG_4	12	1	+	11.191449670631577	4.282694891316358	TGAATATCCATGCA
chr6	85417443	85417444	chr6:85417444:A:G	rs1322403	A	G	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr6	85465141	85465142	chr6:85465142:C:T	rs7746186	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	85747850	85747851	chr6:85747851:G:A	rs112593423	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	85834724	85834725	chr6:85834725:G:C	rs12665542	G	C	a	Sox1.mouse_HMG_4	4	1	-	5.143526669791789	1.0194615061206072	GGAACGATCAGTCA
chr6	86147670	86147671	chr6:86147671:A:G	rs220428	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.463284946546046	-2.4124841865782356	TGAACTTCCATACA
chr6	86855840	86855841	chr6:86855841:A:C	rs16877863	A	C	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr6	86969863	86969864	chr6:86969864:G:A	rs28485887	G	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	87276697	87276698	chr6:87276698:C:T	rs6918942	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr6	87436533	87436534	chr6:87436534:A:G	rs6916320	A	G	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	87473882	87473883	chr6:87473883:A:G	rs550436377	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.955451809309776	4.590630921806768	TGAATAAATATTGA
chr6	87789517	87789518	chr6:87789518:C:T	rs748940350	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr6	87993739	87993740	chr6:87993740:C:T	rs17202124	C	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr6	89141286	89141287	chr6:89141287:A:C	rs4707518	A	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr6	89146780	89146781	chr6:89146781:A:G	rs45464294	A	G	A	Sox1.mouse_HMG_4	2	1	+	4.536836947861344	-2.3719178314538754	TGAACCCCCAGTCA
chr6	89267612	89267613	chr6:89267613:G:A	rs61372695	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	89599082	89599083	chr6:89599083:A:G	chr6:89599083:A:G	A	G	A	Sox1.mouse_HMG_4	6	1	+	7.955451809309777	8.037032538737066	TCAATAAATATTCA
chr6	89979702	89979703	chr6:89979703:G:A	rs62408181	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	90321807	90321808	chr6:90321808:T:C	rs285638	T	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr6	90529283	90529284	chr6:90529284:C:T	rs150125	C	T	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	90631387	90631388	chr6:90631388:A:T	rs2038450	A	T	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr6	90631877	90631878	chr6:90631878:C:T	rs9353748	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	90879261	90879262	chr6:90879262:A:G	rs728441	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr6	91291162	91291163	chr6:91291163:C:T	rs2811655	C	T	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	91437639	91437640	chr6:91437640:C:G	rs9353834	C	G	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	91743533	91743534	chr6:91743534:C:T	rs743213	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	91754787	91754788	chr6:91754788:G:A	rs78887728	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	93327681	93327682	chr6:93327682:C:A	rs164556	C	A	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr6	93387857	93387858	chr6:93387858:G:T	rs79042172	G	T	a	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	93563028	93563029	chr6:93563029:A:G	rs75379370	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	93828058	93828059	chr6:93828059:T:C	rs6904831	T	C	C	Sox1.mouse_HMG_4	2	1	-	5.4976790750293825	-1.4110757042858386	TGAACAATTATTAA
chr6	93993241	93993242	chr6:93993242:T:C	rs78294957	T	C	t	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	94510818	94510819	chr6:94510819:A:C	rs13208166	A	C	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	94590652	94590653	chr6:94590653:C:G	rs34888999	C	G	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	95321091	95321092	chr6:95321092:A:C	rs915920270	A	C	A	Sox1.mouse_HMG_4	7	1	+	6.7262478815492495	6.75257912691107	TGAATTAAAATACA
chr6	95551954	95551955	chr6:95551955:T:G	rs149702219	T	G	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr6	95874122	95874123	chr6:95874123:G:A	rs117794442	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	96022415	96022416	chr6:96022416:T:C	rs117615386	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	96610690	96610691	chr6:96610691:A:G	rs2273622	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	96997741	96997742	chr6:96997742:A:G	rs6920385	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	97125301	97125302	chr6:97125302:C:T	rs9400583	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	98483401	98483402	chr6:98483402:A:G	rs210400	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	98678646	98678647	chr6:98678647:A:G	rs139379346	A	G	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	98989689	98989690	chr6:98989690:G:T	rs2747734	G	T	G	Sox1.mouse_HMG_4	7	1	-	4.029842412994183	4.003511167632362	GGAAATGCCATTCA
chr6	99592127	99592128	chr6:99592128:C:T	rs72930268	C	T	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	100272034	100272035	chr6:100272035:C:T	rs12524392	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	100469317	100469318	chr6:100469318:G:A	rs79933433	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	101009874	101009875	chr6:101009875:C:T	chr6:101009875:C:T	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.281289779311611	0.3725349999963907	TGAATACACTTTCA
chr6	101177306	101177307	chr6:101177307:T:C	chr6:101177307:T:C	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	101177312	101177313	chr6:101177313:A:G	chr6:101177313:A:G	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	101883603	101883604	chr6:101883604:C:G	rs2791844	C	G	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	101957134	101957135	chr6:101957135:T:C	rs1312147	T	C	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	102623568	102623569	chr6:102623569:A:T	rs9377373	A	T	A	Sox1.mouse_HMG_4	8	1	+	7.022379384190478	7.640036083601781	TGAATCTCAAGTCA
chr6	102623586	102623587	chr6:102623587:C:T	rs9499182	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr6	102701742	102701743	chr6:102701743:T:C	rs148667868	T	C	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr6	104014679	104014680	chr6:104014680:A:G	rs2205748	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	104087478	104087479	chr6:104087479:T:C	rs76551507	T	C	T	Sox1.mouse_HMG_4	10	1	+	5.415142666392383	-1.460626466731898	TGAATGTGAATGCC
chr6	104326018	104326019	chr6:104326019:C:G	rs188770311	C	G	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	104718926	104718927	chr6:104718927:G:T	rs9386427	G	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr6	104897149	104897150	chr6:104897150:T:C	rs17065381	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.072072695523544	3.1705229483489434	TGAATTGTAATCCA
chr6	104897160	104897161	chr6:104897161:C:T	rs9377679	C	T	C	Sox1.mouse_HMG_4	11	1	+	7.072072695523544	13.952487609711113	TGAATTGTAATCCA
chr6	105370409	105370410	chr6:105370410:G:C	rs7772423	G	C	G	Sox1.mouse_HMG_4	1	1	+	7.462060711907012	0.5533059325917915	GGAACTCTCATTCA
chr6	105567668	105567669	chr6:105567669:G:C	rs7767469	G	C	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr6	105698036	105698037	chr6:105698037:G:A	rs845855	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	105886504	105886505	chr6:105886505:T:C	rs6926724	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.749656979431145	-0.1377629303730521	CGAATACATGTTCA
chr6	106141530	106141531	chr6:106141531:G:A	rs138829535	G	A	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	106162921	106162922	chr6:106162922:C:T	rs9386513	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr6	106356463	106356464	chr6:106356464:T:C	rs590115	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.284803308869197	0.9199824213661909	TGAAAGGACATGCA
chr6	106356487	106356488	chr6:106356488:A:G	rs472824	A	G	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr6	106511203	106511204	chr6:106511204:A:T	rs783421	A	T	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr6	106547532	106547533	chr6:106547533:A:C	rs1676027	A	C	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	106688668	106688669	chr6:106688669:C:A	rs79061069	C	A	a	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	106824190	106824191	chr6:106824191:A:T	rs149857809	A	T	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	106948483	106948484	chr6:106948484:T:C	rs36136285	T	C	T	Sox1.mouse_HMG_4	11	1	+	6.764615472054598	-0.11579944213297089	TGAATTCTTTTTCA
chr6	107601017	107601018	chr6:107601018:C:T	rs118029213	C	T	C	Sox1.mouse_HMG_4	12	1	+	8.211049483255147	1.3022947039399264	TGAATAGACACTCA
chr6	107704863	107704864	chr6:107704864:C:G	chr6:107704864:C:G	C	G	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	108069973	108069974	chr6:108069974:A:T	rs7764597	A	T	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr6	108203802	108203803	chr6:108203803:C:T	rs1470350942	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr6	108589654	108589655	chr6:108589655:G:C	chr6:108589655:G:C	G	C	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	108676924	108676925	chr6:108676925:T:G	rs3800230	T	G	T	Sox1.mouse_HMG_4	8	1	-	4.725698885626017	5.484386883364459	TGAACAGAAATACA
chr6	108699430	108699431	chr6:108699431:T:C	rs4946938	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	108837655	108837656	chr6:108837656:C:G	rs143854592	C	G	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	108966832	108966833	chr6:108966833:C:G	rs76094073	C	G	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	109073596	109073597	chr6:109073597:A:G	rs895615347	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	109323395	109323396	chr6:109323396:A:C	rs35757653	A	C	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr6	109403895	109403896	chr6:109403896:C:T	rs142043442	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr6	109636119	109636120	chr6:109636120:C:T	rs729888	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	109897572	109897573	chr6:109897573:A:G	rs9386858	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	109938737	109938738	chr6:109938738:C:T	rs9372241	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr6	110244773	110244774	chr6:110244774:G:A	rs147094502	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	110637053	110637054	chr6:110637054:A:G	rs79339242	A	G	G	Sox1.mouse_HMG_4	7	1	-	6.059825467692805	5.821912628507622	TGAATTCTAAGTCC
chr6	111731901	111731902	chr6:111731902:G:A	rs697642	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	111976267	111976268	chr6:111976268:T:A	rs687438	T	A	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr6	112100116	112100117	chr6:112100117:C:T	rs6931815	C	T	T	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	112331854	112331855	chr6:112331855:A:C	rs11153358	A	C	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr6	112331868	112331869	chr6:112331869:G:A	rs7747546	G	A	A	Sox1.mouse_HMG_4	8	1	-	4.813242949561201	4.67221165123406	TGAATAGACAGTGA
chr6	112341029	112341030	chr6:112341030:T:C	rs1539402	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	112607663	112607664	chr6:112607664:A:G	rs1276325	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	112684915	112684916	chr6:112684916:C:T	rs1551473	C	T	c	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr6	112935009	112935010	chr6:112935010:C:T	rs2795579	C	T	C	Sox1.mouse_HMG_4	6	1	-	7.929764740001855	7.848184010574566	GGAATCGACATTCA
chr6	113074309	113074310	chr6:113074310:A:T	rs6935658	A	T	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	113315585	113315586	chr6:113315586:A:G	rs6941116	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	113351962	113351963	chr6:113351963:G:A	rs2637536	G	A	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	113465433	113465434	chr6:113465434:C:A	rs10484457	C	A	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	113642891	113642892	chr6:113642892:T:C	rs7773293	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	113642908	113642909	chr6:113642909:G:A	rs413599	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	113731951	113731952	chr6:113731952:A:G	rs2253750	A	G	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	113764345	113764346	chr6:113764346:A:G	rs34753135	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	114017353	114017354	chr6:114017354:A:G	rs62415952	A	G	a	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	114017355	114017356	chr6:114017356:G:A	rs12663571	G	A	g	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	114278742	114278743	chr6:114278743:T:C	rs17076019	T	C	C	Sox1.mouse_HMG_4	5	1	-	7.011829750622406	6.570050528017068	TTAATATAAATTCA
chr6	114339560	114339561	chr6:114339561:C:T	rs12190227	C	T	C	Sox1.mouse_HMG_4	7	1	-	12.565744830997186	13.517171818959014	TGAATTCGCATTCA
chr6	114480916	114480917	chr6:114480917:C:A	rs12200600	C	A	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr6	117433523	117433524	chr6:117433524:C:T	rs11756910	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr6	117446755	117446756	chr6:117446756:G:T	rs17635403	G	T	g	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr6	117478611	117478612	chr6:117478612:G:T	rs75320948	G	T	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr6	117553093	117553094	chr6:117553094:A:G	rs210625	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	117951435	117951436	chr6:117951436:G:A	rs4946304	G	A	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	118100941	118100942	chr6:118100942:A:T	rs9374717	A	T	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	118467488	118467489	chr6:118467489:G:T	rs11752626	G	T	G	Sox1.mouse_HMG_4	8	1	-	4.820666262312372	4.061978264573929	TGAAAAACCAGTCA
chr6	118697900	118697901	chr6:118697901:A:T	rs1688631	A	T	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	118864512	118864513	chr6:118864513:C:T	rs146875048	C	T	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	118936041	118936042	chr6:118936042:G:T	rs116028638	G	T	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr6	119076694	119076695	chr6:119076695:T:C	rs1935817	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	119151169	119151170	chr6:119151170:G:C	rs611211	G	C	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr6	119276517	119276518	chr6:119276518:C:T	rs2357375	C	T	T	Sox1.mouse_HMG_4	8	1	+	4.651822165869971	4.510790867542831	TAACTAGTCATTCA
chr6	119547664	119547665	chr6:119547665:C:T	rs7741053	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	119719206	119719207	chr6:119719207:A:G	rs148841869	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	119958734	119958735	chr6:119958735:A:G	rs76579243	A	G	A	Sox1.mouse_HMG_4	9	1	-	8.155799999189679	8.155799999189679	TGAATAACCTTTCA
chr6	119960386	119960387	chr6:119960387:G:A	rs9320728	G	A	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr6	120313693	120313694	chr6:120313694:A:G	rs10457378	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.23267914269022	3.9947663035050365	TGAATTGTCATCCC
chr6	121142227	121142228	chr6:121142228:T:C	chr6:121142228:T:C	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	122029274	122029275	chr6:122029275:G:C	rs73524388	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	122117206	122117207	chr6:122117207:C:A	rs6928681	C	A	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	122995762	122995763	chr6:122995763:C:G	rs7767023	C	G	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	123125841	123125842	chr6:123125842:T:A	rs4896515	T	A	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	123291251	123291252	chr6:123291252:A:G	rs9401649	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr6	123306776	123306777	chr6:123306777:T:C	rs9285450	T	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	123352309	123352310	chr6:123352310:G:T	rs9375250	G	T	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr6	123393510	123393511	chr6:123393511:G:T	rs73771940	G	T	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	123393511	123393512	chr6:123393512:C:T	rs73771941	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	123617343	123617344	chr6:123617344:A:G	rs931933161	A	G	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	123659028	123659029	chr6:123659029:G:A	rs884014	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	123806203	123806204	chr6:123806204:C:T	rs115111387	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	124487937	124487938	chr6:124487938:C:T	rs1572471	C	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	124882291	124882292	chr6:124882292:A:G	rs781738	A	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	124882294	124882295	chr6:124882295:C:T	rs12200108	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr6	124997556	124997557	chr6:124997557:C:G	rs1334427	C	G	G	Sox1.mouse_HMG_4	6	1	-	3.807007879398852	2.8772481754553167	TGACTTGCCCTTCA
chr6	125250709	125250710	chr6:125250710:T:C	rs9491339	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr6	125272395	125272396	chr6:125272396:A:G	rs9482629	A	G	-	Sox1.mouse_HMG_4	9	1	+	4.3182228626562225	0.9534019751532152	TGAATGAACAGCCA
chr6	125747636	125747637	chr6:125747637:G:C	rs112132135	G	C	G	Sox1.mouse_HMG_4	6	1	-	5.646248168242496	6.576007872186032	TGAATTCAAATGCC
chr6	125747649	125747650	chr6:125747650:C:T	rs112509205	C	T	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	125924698	125924699	chr6:125924699:C:A	rs73588261	C	A	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr6	126002484	126002485	chr6:126002485:T:A	rs1569739	T	A	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	127440186	127440187	chr6:127440187:A:T	rs2326592	A	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	127539261	127539262	chr6:127539262:G:T	rs9491812	G	T	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	127773926	127773927	chr6:127773927:A:G	rs391948	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	127773927	127773928	chr6:127773928:T:C	rs377764	T	C	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	128131749	128131750	chr6:128131750:G:A	rs180770043	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	128167708	128167709	chr6:128167709:T:C	rs79796883	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr6	128539109	128539110	chr6:128539110:A:G	rs17055964	A	G	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	129007120	129007121	chr6:129007121:C:T	rs74837467	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	129252869	129252870	chr6:129252870:T:G	rs7754620	T	G	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr6	129264328	129264329	chr6:129264329:T:C	rs9492287	T	C	C	Sox1.mouse_HMG_4	9	1	-	5.660045242867545	2.295224355364538	TGATCAATCATTCA
chr6	129404988	129404989	chr6:129404989:A:G	rs6900123	A	G	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr6	129404999	129405000	chr6:129405000:T:C	rs6922953	T	C	T	Sox1.mouse_HMG_4	13	1	-	9.93030201374886	3.0475568977708907	TGAATAAGAAGTCA
chr6	129664775	129664776	chr6:129664776:G:A	rs12193673	G	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr6	129710042	129710043	chr6:129710043:C:T	rs34390841	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	129710069	129710070	chr6:129710070:T:C	rs3752536	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	129759974	129759975	chr6:129759975:T:A	rs970068	T	A	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr6	129775251	129775252	chr6:129775252:A:T	rs34833653	A	T	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr6	129831994	129831995	chr6:129831995:C:G	rs9492391	C	G	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr6	130013538	130013539	chr6:130013539:T:C	rs764140891	T	C	T	Sox1.mouse_HMG_4	13	1	-	8.237380728616968	1.3546356126389982	TGAATAGCCAATCA
chr6	130149047	130149048	chr6:130149048:A:T	rs1932107	A	T	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	130233566	130233567	chr6:130233567:T:C	rs17058566	T	C	C	Sox1.mouse_HMG_4	13	1	-	7.452361485516704	0.5696163695387346	TGAATAGAAACTCA
chr6	130389368	130389369	chr6:130389369:G:A	rs117482405	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr6	130826293	130826294	chr6:130826294:G:A	rs9388855	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	130828275	130828276	chr6:130828276:C:T	rs1360756	C	T	T	Sox1.mouse_HMG_4	1	1	-	6.764193252686187	-0.14456152662903454	CGAATGTCCATTCC
chr6	131002384	131002385	chr6:131002385:C:G	rs74802828	C	G	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr6	131026395	131026396	chr6:131026396:C:A	rs79292589	C	A	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	131729579	131729580	chr6:131729580:C:T	rs1367333565	C	T	c	Sox1.mouse_HMG_4	0	1	-	7.3659713583663695	4.099067564487587	GGAATAGAAAGTCA
chr6	131946382	131946383	chr6:131946383:A:G	rs1029121	A	G	G	Sox1.mouse_HMG_4	3	1	+	5.204699361944253	-1.682720547859944	TGAACATTTTTTCA
chr6	132231366	132231367	chr6:132231367:A:G	rs6935755	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr6	132298881	132298882	chr6:132298882:A:G	rs1977075	A	G	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr6	132330877	132330878	chr6:132330878:A:G	rs9321338	A	G	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr6	132607434	132607435	chr6:132607435:T:C	chr6:132607435:T:C	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr6	132706953	132706954	chr6:132706954:T:C	rs59702053	T	C	C	Sox1.mouse_HMG_4	9	1	-	4.359617975729919	0.994797088226913	TGAATCACCATGCC
chr6	132798990	132798991	chr6:132798991:T:C	rs73772954	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	132813449	132813450	chr6:132813450:A:G	chr6:132813450:A:G	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	133016328	133016329	chr6:133016329:T:A	rs2926351	T	A	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	133699895	133699896	chr6:133699896:T:G	rs2017324	T	G	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	133767925	133767926	chr6:133767926:A:G	rs146657527	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	133833842	133833843	chr6:133833843:C:G	rs142198314	C	G	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr6	133842740	133842741	chr6:133842741:A:C	rs6941444	A	C	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr6	134316708	134316709	chr6:134316709:A:G	rs6923743	A	G	A	Sox1.mouse_HMG_4	6	1	+	7.753825744897984	7.835406474325273	TGAATTATCACTCA
chr6	134319807	134319808	chr6:134319808:G:A	rs79050418	G	A	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr6	134627781	134627782	chr6:134627782:T:C	chr6:134627782:T:C	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	134722256	134722257	chr6:134722257:A:G	rs6903084	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	134787483	134787484	chr6:134787484:T:C	rs7775677	T	C	C	Sox1.mouse_HMG_4	7	1	-	13.920584529937624	12.969157541975797	TGAATATAAATTCA
chr6	134850124	134850125	chr6:134850125:A:C	rs737153	A	C	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr6	134880825	134880826	chr6:134880826:T:G	rs926276007	T	G	T	Sox1.mouse_HMG_4	13	1	-	7.988437455500715	4.390355904928949	TGAATAAATCTTCA
chr6	135167867	135167868	chr6:135167868:T:C	rs56735271	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr6	135921468	135921469	chr6:135921469:G:C	rs9402776	G	C	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr6	135922707	135922708	chr6:135922708:A:C	rs73775615	A	C	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr6	136728694	136728695	chr6:136728695:A:T	rs9376226	A	T	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr6	136739750	136739751	chr6:136739751:A:C	rs9483946	A	C	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	136799018	136799019	chr6:136799019:C:T	rs78454985	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	136979822	136979823	chr6:136979823:A:G	rs9494624	A	G	G	Sox1.mouse_HMG_4	2	1	+	5.110007318217756	-1.7987474610974659	GGAACATTCATGCA
chr6	137016560	137016561	chr6:137016561:G:A	rs383990	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	137095995	137095996	chr6:137095996:A:G	rs7760073	A	G	A	Sox1.mouse_HMG_4	13	1	+	6.290979290815779	-0.5917658251621907	GGAATTCCTATGCA
chr6	137315209	137315210	chr6:137315210:A:G	rs185812860	A	G	A	Sox1.mouse_HMG_4	9	1	+	5.332564248332329	1.9677433608293218	TGAACCATTATGCA
chr6	137352902	137352903	chr6:137352903:T:C	rs1022400	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr6	137445987	137445988	chr6:137445988:A:G	rs6932198	A	G	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	137865054	137865055	chr6:137865055:G:C	rs112241466	G	C	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	137871607	137871608	chr6:137871608:G:A	rs719149	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr6	137975411	137975412	chr6:137975412:G:T	rs9484103	G	T	G	Sox1.mouse_HMG_4	8	1	-	7.13063065488397	6.371942657145529	TGAATTTACATTTA
chr6	138086909	138086910	chr6:138086910:G:A	rs80163205	G	A	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr6	138528492	138528493	chr6:138528493:T:C	rs73557314	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	138593494	138593495	chr6:138593495:T:C	rs7768937	T	C	C	Sox1.mouse_HMG_4	10	1	+	7.060710935327711	0.18494180220342993	TGACTTAACATGCA
chr6	138814361	138814362	chr6:138814362:G:A	rs17067925	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr6	139290905	139290906	chr6:139290906:A:G	rs28623648	A	G	G	Sox1.mouse_HMG_4	9	1	+	3.7342879726869818	0.36946708518397453	TGAATGCTCAGACA
chr6	139431446	139431447	chr6:139431447:C:A	rs12199070	C	A	C	Sox1.mouse_HMG_4	7	1	+	3.768649230416595	3.7423179850547728	TGACTGGCCATGCC
chr6	139520196	139520197	chr6:139520197:A:G	rs61492526	A	G	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr6	139598288	139598289	chr6:139598289:G:A	rs11966158	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	139625974	139625975	chr6:139625975:G:A	rs1015327919	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	139650028	139650029	chr6:139650029:C:T	rs17069153	C	T	c	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr6	139918308	139918309	chr6:139918309:C:T	rs76401247	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	139981050	139981051	chr6:139981051:A:G	rs940368933	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	140138344	140138345	chr6:140138345:G:T	rs34358600	G	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	140978761	140978762	chr6:140978762:T:C	rs1856365	T	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr6	141401820	141401821	chr6:141401821:G:A	rs9484507	G	A	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr6	141541458	141541459	chr6:141541459:G:A	rs62430845	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	141932471	141932472	chr6:141932472:C:A	rs67214925	C	A	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr6	142235661	142235662	chr6:142235662:G:A	rs225733	G	A	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	142940536	142940537	chr6:142940537:C:T	rs115316235	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	143334844	143334845	chr6:143334845:G:C	rs77919378	G	C	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	143453061	143453062	chr6:143453062:A:G	rs6935618	A	G	A	Sox1.mouse_HMG_4	9	1	+	6.4174613456032725	3.0526404581002655	GGAACTGGAATTCA
chr6	143523782	143523783	chr6:143523783:C:T	rs2170804	C	T	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	143973341	143973342	chr6:143973342:C:T	rs896324171	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr6	144249700	144249701	chr6:144249701:C:T	rs7738503	C	T	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr6	144357994	144357995	chr6:144357995:G:A	rs74969886	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	144654381	144654382	chr6:144654382:A:T	rs1980379	A	T	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	144798254	144798255	chr6:144798255:G:A	rs73594586	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr6	145009008	145009009	chr6:145009009:G:C	rs75207080	G	C	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	145022255	145022256	chr6:145022256:A:G	rs115027893	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr6	145116635	145116636	chr6:145116636:A:G	rs147399793	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr6	145207040	145207041	chr6:145207041:T:A	rs2743955	T	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr6	145878549	145878550	chr6:145878550:C:T	rs2253757	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	146347279	146347280	chr6:146347280:T:C	rs148842157	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	146812893	146812894	chr6:146812894:A:G	rs115679827	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr6	146813689	146813690	chr6:146813690:A:G	rs9403818	A	G	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	146841365	146841366	chr6:146841366:G:A	rs17076356	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr6	146879442	146879443	chr6:146879443:C:T	rs1324683	C	T	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr6	147711711	147711712	chr6:147711712:T:C	rs3861410	T	C	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	147787995	147787996	chr6:147787996:T:G	rs4895720	T	G	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	147833834	147833835	chr6:147833835:C:G	rs1339525	C	G	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr6	147855979	147855980	chr6:147855980:G:A	rs142273543	G	A	G	Sox1.mouse_HMG_4	5	1	+	10.723339202664418	11.165118425269757	TGAATGTACATGCA
chr6	147932849	147932850	chr6:147932850:A:G	rs9497896	A	G	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	147975074	147975075	chr6:147975075:G:A	rs3903593	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	148409140	148409141	chr6:148409141:G:A	rs13204061	G	A	G	Sox1.mouse_HMG_4	12	1	-	10.99663987135439	4.08788509203917	TGAATAATAATGCA
chr6	148439902	148439903	chr6:148439903:G:T	rs10872615	G	T	G	Sox1.mouse_HMG_4	6	1	+	5.026256350547383	4.618710261844026	TGAACTGTCAGTCC
chr6	148462379	148462380	chr6:148462380:G:A	rs73585678	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr6	148463815	148463816	chr6:148463816:G:A	rs116835823	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	148526849	148526850	chr6:148526850:T:C	rs79888046	T	C	T	Sox1.mouse_HMG_4	7	1	-	5.217653378688628	4.2662263907268	TGAACCAATGTTCA
chr6	148563099	148563100	chr6:148563100:T:C	rs414335	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	148563102	148563103	chr6:148563103:G:A	rs451697	G	A	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr6	148737671	148737672	chr6:148737672:A:C	rs7764228	A	C	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr6	148906860	148906861	chr6:148906861:G:A	rs4897069	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	149089686	149089687	chr6:149089687:C:T	rs532932781	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	149403735	149403736	chr6:149403736:G:A	rs55836833	G	A	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	149457536	149457537	chr6:149457537:C:T	rs111730293	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr6	149616859	149616860	chr6:149616860:T:C	rs9767554	T	C	t	Sox1.mouse_HMG_4	5	1	-	6.09018255206648	5.648403329461141	TGAATATGAGTGCA
chr6	149886974	149886975	chr6:149886975:T:C	rs7758020	T	C	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	149886998	149886999	chr6:149886999:T:C	rs7758033	T	C	C	Sox1.mouse_HMG_4	10	1	+	7.072072695523544	0.1963035623992624	TGAATTGTAATACA
chr6	150149202	150149203	chr6:150149203:C:A	rs6928991	C	A	A	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	150206203	150206204	chr6:150206204:T:G	rs60627955	T	G	T	Sox1.mouse_HMG_4	8	1	-	6.582782260733139	7.341470258471582	GGAATTTTAAGTCA
chr6	150304435	150304436	chr6:150304436:T:C	rs6904151	T	C	T	Sox1.mouse_HMG_4	13	1	-	8.101947805383888	1.2192026894059191	GGAACACTCATTCA
chr6	150427646	150427647	chr6:150427647:A:T	rs12206827	A	T	A	Sox1.mouse_HMG_4	13	1	+	7.9767866788208	1.0940415628428308	TGATTAAATATTCA
chr6	150515539	150515540	chr6:150515540:T:C	rs9322263	T	C	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr6	150694921	150694922	chr6:150694922:C:G	rs275350	C	G	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	150711949	150711950	chr6:150711950:T:C	rs6557086	T	C	C	Sox1.mouse_HMG_4	13	1	-	6.0715006624843255	-0.8112444534936438	TGACTTCATATGCA
chr6	150713130	150713131	chr6:150713131:G:A	rs12207259	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	150765600	150765601	chr6:150765601:G:A	rs6917646	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr6	151019476	151019477	chr6:151019477:C:G	rs67140810	C	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	151045218	151045219	chr6:151045219:G:A	rs74752198	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	151079017	151079018	chr6:151079018:G:A	rs11753585	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr6	151136674	151136675	chr6:151136675:T:C	rs187894046	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr6	151369146	151369147	chr6:151369147:G:A	rs76690264	G	A	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	151536901	151536902	chr6:151536902:C:T	rs74646624	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	151536937	151536938	chr6:151536938:T:G	rs1482064	T	G	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	151659556	151659557	chr6:151659557:A:G	rs1771351	A	G	G	Sox1.mouse_HMG_4	9	1	+	9.897422984368957	6.532602096865951	TGAATTGGCATTCC
chr6	151659571	151659572	chr6:151659572:T:C	rs9397069	T	C	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	151763726	151763727	chr6:151763727:T:C	rs2504071	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr6	151958779	151958780	chr6:151958780:C:G	rs7762893	C	G	C	Sox1.mouse_HMG_4	4	1	+	5.456047018236807	1.331981854565626	TGAACAGACATTGA
chr6	152099549	152099550	chr6:152099550:C:G	rs33986155	C	G	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr6	152220040	152220041	chr6:152220041:A:G	rs9397088	A	G	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	152330898	152330899	chr6:152330899:A:T	rs6911096	A	T	T	Sox1.mouse_HMG_4	2	1	+	4.19515691802823	-2.7135978612869867	AGAACTCTCATTCA
chr6	152337749	152337750	chr6:152337750:T:C	rs9478315	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	152458578	152458579	chr6:152458579:G:C	rs214962	G	C	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr6	152624710	152624711	chr6:152624711:T:C	rs1407487	T	C	C	Sox1.mouse_HMG_4	2	1	-	10.247210788881961	3.3384560095667437	TGAATGAGCAGTCA
chr6	152782149	152782150	chr6:152782150:T:A	rs646661	T	A	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr6	152916140	152916141	chr6:152916141:A:C	rs9397568	A	C	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr6	153093151	153093152	chr6:153093152:C:A	rs9397586	C	A	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	153669017	153669018	chr6:153669018:G:A	rs11155928	G	A	A	Sox1.mouse_HMG_4	7	1	-	4.563098849392774	4.801011688577959	TGAATCACCATTAA
chr6	153898622	153898623	chr6:153898623:T:A	rs17084671	T	A	T	Sox1.mouse_HMG_4	3	1	+	4.928804500717332	11.816224410521528	TGATCATATATTCA
chr6	153901323	153901324	chr6:153901324:T:C	rs76082037	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	154092538	154092539	chr6:154092539:C:T	rs533586	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr6	154293154	154293155	chr6:154293155:T:A	rs35622085	T	A	t	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr6	154293176	154293177	chr6:154293177:G:A	rs112282044	G	A	G	Sox1.mouse_HMG_4	6	1	+	4.579982286492441	4.498401557065152	TAAATAGACATTCC
chr6	154512920	154512921	chr6:154512921:T:C	rs62432735	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	154691230	154691231	chr6:154691231:T:C	rs9397198	T	C	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr6	155016085	155016086	chr6:155016086:C:T	rs2498491	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.55148564356438	4.410454345237241	GGAATAACCATTCT
chr6	155120917	155120918	chr6:155120918:C:T	rs6557403	C	T	C	Sox1.mouse_HMG_4	6	1	+	5.855097922553505	6.377311537793682	TCAATGCGCATTCA
chr6	155484146	155484147	chr6:155484147:C:T	rs7738860	C	T	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr6	155524362	155524363	chr6:155524363:A:G	rs6557432	A	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	155530465	155530466	chr6:155530466:T:A	rs79317329	T	A	T	Sox1.mouse_HMG_4	13	1	-	8.070221206105485	1.1874760901275163	TGAACACACGTTCA
chr6	155678409	155678410	chr6:155678410:C:G	rs1498620	C	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	156169393	156169394	chr6:156169394:C:A	rs7749940	C	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	156474445	156474446	chr6:156474446:G:A	rs9322582	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr6	157054815	157054816	chr6:157054816:C:T	rs150249066	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	157548051	157548052	chr6:157548052:G:A	rs9505848	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr6	157617718	157617719	chr6:157617719:G:A	rs9365170	G	A	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	157640263	157640264	chr6:157640264:A:G	rs661749	A	G	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	157757041	157757042	chr6:157757042:C:T	rs139997124	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr6	158150745	158150746	chr6:158150746:T:C	rs73794523	T	C	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	158285464	158285465	chr6:158285465:C:T	rs827857	C	T	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr6	158391328	158391329	chr6:158391329:A:G	rs705936	A	G	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	158445477	158445478	chr6:158445478:T:C	rs705958	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	158460871	158460872	chr6:158460872:A:G	rs618132	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr6	158460902	158460903	chr6:158460903:G:T	rs601840	G	T	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	158803902	158803903	chr6:158803903:T:C	rs3127193	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr6	158919707	158919708	chr6:158919708:T:G	rs78952443	T	G	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	158950205	158950206	chr6:158950206:C:G	rs12208901	C	G	C	Sox1.mouse_HMG_4	4	1	+	5.171728592946819	1.0476634292756375	GGAACAAACATGCA
chr6	159048479	159048480	chr6:159048480:G:C	rs1054091	G	C	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr6	159426901	159426902	chr6:159426902:T:G	rs961028731	T	G	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr6	159669166	159669167	chr6:159669167:G:A	rs2758327	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr6	159908583	159908584	chr6:159908584:G:A	rs12216486	G	A	g	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr6	160047350	160047351	chr6:160047351:T:C	rs998074	T	C	C	Sox1.mouse_HMG_4	2	1	-	5.087801144781364	-1.8209536345338568	GGAACAAACATTCC
chr6	160442299	160442300	chr6:160442300:A:G	rs2136043	A	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr6	160776525	160776526	chr6:160776526:T:C	rs1740442	T	C	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr6	160918597	160918598	chr6:160918598:A:G	rs560267588	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	160918609	160918610	chr6:160918610:T:C	rs73782346	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr6	161238698	161238699	chr6:161238699:T:C	rs754370139	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.313638849499632	0.4262189396954341	GGAACTACAATTCA
chr6	161238714	161238715	chr6:161238715:A:G	rs6455714	A	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr6	161306804	161306805	chr6:161306805:A:G	rs9295146	A	G	G	Sox1.mouse_HMG_4	13	1	+	4.1950572764549845	-2.687687839522985	GGAATGGCCAGGCA
chr6	161342216	161342217	chr6:161342217:A:T	rs1211440354	A	T	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr6	161347308	161347309	chr6:161347309:G:A	rs112410770	G	A	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr6	161379790	161379791	chr6:161379791:A:T	rs62435884	A	T	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr6	161418748	161418749	chr6:161418749:C:T	rs4709517	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	161442042	161442043	chr6:161442043:T:C	rs10806745	T	C	C	Sox1.mouse_HMG_4	13	1	-	4.994588751236309	-1.88815636474166	TGAACAGTATTTCA
chr6	161462417	161462418	chr6:161462418:C:T	rs189658159	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr6	161478158	161478159	chr6:161478159:T:A	rs6922432	T	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	161618916	161618917	chr6:161618917:G:A	rs547804823	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr6	161618955	161618956	chr6:161618956:G:C	rs530241984	G	C	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr6	162203649	162203650	chr6:162203650:T:C	rs77426763	T	C	T	Sox1.mouse_HMG_4	9	1	-	6.665826354761549	3.301005467258542	TGACTCCATATTCA
chr6	162477839	162477840	chr6:162477840:C:A	rs62428773	C	A	C	Sox1.mouse_HMG_4	6	1	-	4.171188710078042	3.7636426213746823	TGAATGGACCTTCC
chr6	163027107	163027108	chr6:163027108:A:G	rs73783974	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	163315469	163315470	chr6:163315470:A:G	rs6903758	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr6	163383382	163383383	chr6:163383383:T:C	rs2064230	T	C	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr6	163518292	163518293	chr6:163518293:T:G	rs112912796	T	G	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr6	163527531	163527532	chr6:163527532:G:A	rs2321702	G	A	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr6	163837927	163837928	chr6:163837928:G:A	rs115973434	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	163844417	163844418	chr6:163844418:A:G	rs144686238	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr6	163945903	163945904	chr6:163945904:C:T	rs181066214	C	T	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr6	164114217	164114218	chr6:164114218:G:A	rs12173338	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr6	164320114	164320115	chr6:164320115:G:A	rs9456949	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr6	164975306	164975307	chr6:164975307:T:G	rs10946053	T	G	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr6	164991427	164991428	chr6:164991428:A:G	rs28539262	A	G	A	Sox1.mouse_HMG_4	10	1	-	3.739226624727367	-3.1365425083969134	TGAAAACCCATTCC
chr6	165220813	165220814	chr6:165220814:G:T	rs1744503	G	T	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr6	165632804	165632805	chr6:165632805:C:T	rs62424874	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	165713126	165713127	chr6:165713127:T:C	rs7753384	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr6	165748716	165748717	chr6:165748717:C:T	rs59641479	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr6	165824281	165824282	chr6:165824282:C:T	rs6926924	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr6	165832886	165832887	chr6:165832887:T:A	rs73031982	T	A	T	Sox1.mouse_HMG_4	10	1	+	6.416455269810359	-0.45931386331392177	AGAATTTAAATTCA
chr6	166250145	166250146	chr6:166250146:A:G	rs73787066	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr6	166422305	166422306	chr6:166422306:C:T	rs56171280	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr6	166703197	166703198	chr6:166703198:G:A	rs117037637	G	A	g	Sox1.mouse_HMG_4	13	1	-	6.554179601243945	3.269516035837741	CGAATAAGCATTCC
chr6	166885026	166885027	chr6:166885027:G:A	rs9356535	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr6	167047632	167047633	chr6:167047633:A:C	chr6:167047633:A:C	A	C	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr6	167660771	167660772	chr6:167660772:T:C	rs9455844	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr6	167858570	167858571	chr6:167858571:G:A	rs9505709	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr6	167990173	167990174	chr6:167990174:T:C	rs12205494	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	167990211	167990212	chr6:167990212:C:T	rs971747870	C	T	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr6	168116877	168116878	chr6:168116878:A:T	rs58661648	A	T	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	168116898	168116899	chr6:168116899:C:T	rs4708652	C	T	C	Sox1.mouse_HMG_4	7	1	+	11.748328974238241	11.986241813423424	TGAATAGCCAGTCA
chr6	168178769	168178770	chr6:168178770:G:A	rs79331451	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr6	168178785	168178786	chr6:168178786:C:T	rs6914083	C	T	C	Sox1.mouse_HMG_4	12	1	+	7.923510323986616	1.014755544671395	TGAATATTTGTGCA
chr6	168186417	168186418	chr6:168186418:G:A	rs57729648	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr6	168288678	168288679	chr6:168288679:A:G	rs78758785	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr6	168293835	168293836	chr6:168293836:C:T	rs762648722	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr6	168293868	168293869	chr6:168293869:G:A	rs78779496	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr6	168387386	168387387	chr6:168387387:C:T	rs7767312	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr6	168518356	168518357	chr6:168518357:C:T	rs2180345	C	T	T	Sox1.mouse_HMG_4	0	1	+	5.878664384104156	9.780214131278752	CGAATGTGTGTTCA
chr6	168531904	168531905	chr6:168531905:G:A	rs12204025	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr6	168886759	168886760	chr6:168886760:C:G	rs10945319	C	G	C	Sox1.mouse_HMG_4	4	1	+	4.836168380541869	0.7121032168706869	AGAACGAATATTCA
chr6	168918964	168918965	chr6:168918965:T:C	rs58162847	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.779488745848887	4.0574719270214885	TCAATTGAAATTCA
chr6	168950377	168950378	chr6:168950378:T:C	rs117155495	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr6	169072222	169072223	chr6:169072223:C:T	rs143815169	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr6	169072223	169072224	chr6:169072224:G:A	rs62435772	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr6	169111166	169111167	chr6:169111167:A:C	rs62434686	A	C	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	169172048	169172049	chr6:169172049:T:C	rs12212161	T	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr6	169172054	169172055	chr6:169172055:T:C	rs574588633	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr6	169190702	169190703	chr6:169190703:C:T	rs1467584	C	T	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr6	169380517	169380518	chr6:169380518:T:C	rs9294997	T	C	T	Sox1.mouse_HMG_4	0	1	+	5.477381887747831	1.5758321405732303	TGAGCAGACATTCA
chr6	169578394	169578395	chr6:169578395:G:C	rs9396977	G	C	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr6	169578409	169578410	chr6:169578410:T:C	rs6916437	T	C	T	Sox1.mouse_HMG_4	13	1	-	3.818534845872742	-3.0642102701052267	AGACTTGCCATTCA
chr6	169789829	169789830	chr6:169789830:G:A	rs3823466	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr6	170201363	170201364	chr6:170201364:C:T	rs74695480	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr6	170248915	170248916	chr6:170248916:T:G	rs3012428	T	G	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr6	170287610	170287611	chr6:170287611:C:T	rs1884190	C	T	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr6	170553814	170553815	chr6:170553815:C:T	rs59555240	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr6	170603248	170603249	chr6:170603249:T:C	rs76874008	T	C	.	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr7	90875	90876	chr7:90876:T:A	rs11769060	T	A	t	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	294916	294917	chr7:294917:T:C	rs36161051	T	C	T	Sox1.mouse_HMG_4	7	1	-	4.87591574637784	3.924488758416012	TGAAGAGACAGTCA
chr7	406680	406681	chr7:406681:A:G	rs149182890	A	G	a	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	562947	562948	chr7:562948:G:A	rs146728011	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr7	798173	798174	chr7:798174:G:C	rs56390623	G	C	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	809226	809227	chr7:809227:C:G	rs6461156	C	G	N	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr7	809232	809233	chr7:809233:A:C	rs6956842	A	C	a	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr7	1137372	1137373	chr7:1137373:T:A	rs76990427	T	A	t	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr7	1558677	1558678	chr7:1558678:C:G	rs11764101	C	G	C	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr7	2092490	2092491	chr7:2092491:T:C	rs4721390	T	C	-	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr7	2283531	2283532	chr7:2283532:G:C	rs6952527	G	C	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	2293332	2293333	chr7:2293333:G:T	rs12699820	G	T	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	2305313	2305314	chr7:2305314:A:G	chr7:2305314:A:G	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr7	2330776	2330777	chr7:2330777:A:G	rs10264281	A	G	g	Sox1.mouse_HMG_4	3	1	+	5.741851203468609	-1.1455687063355893	GGAATGAGAATGCA
chr7	2379009	2379010	chr7:2379010:A:G	rs6461351	A	G	G	Sox1.mouse_HMG_4	5	1	+	4.127244182656636	3.6854649600512968	GGACTAGCCATTCC
chr7	2567256	2567257	chr7:2567257:A:G	rs79462939	A	G	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr7	2567262	2567263	chr7:2567263:G:T	rs555001863	G	T	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr7	2567299	2567300	chr7:2567300:G:A	rs10488610	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	2567302	2567303	chr7:2567303:G:A	rs62442597	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr7	2608165	2608166	chr7:2608166:G:A	rs4719602	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	2682099	2682100	chr7:2682100:C:T	rs113739531	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr7	2682102	2682103	chr7:2682103:C:T	rs868756792	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr7	2715297	2715298	chr7:2715298:T:C	rs4721988	T	C	T	Sox1.mouse_HMG_4	11	1	+	9.264224994596026	2.383810080408457	TGAACAGTCAGTCA
chr7	2715309	2715310	chr7:2715310:G:A	rs565355146	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr7	2834966	2834967	chr7:2834967:A:G	rs1182176	A	G	G	Sox1.mouse_HMG_4	10	1	-	4.928153819204901	-1.9476153139193804	TGTATAGTCATGCA
chr7	2834978	2834979	chr7:2834979:T:C	rs551602905	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr7	2853805	2853806	chr7:2853806:C:T	rs1636256	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr7	2871863	2871864	chr7:2871864:T:G	rs56343587	T	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr7	2980740	2980741	chr7:2980741:C:T	rs1878808	C	T	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	2981501	2981502	chr7:2981502:C:T	rs1878807	C	T	C	Sox1.mouse_HMG_4	11	1	-	3.823154072892822	0.4568932611115637	TGAAGACCCATGCA
chr7	2983700	2983701	chr7:2983701:C:T	chr7:2983701:C:T	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	2984005	2984006	chr7:2984006:A:G	rs13224510	A	G	G	Sox1.mouse_HMG_4	11	1	-	3.9271124194827998	-2.9533024947047695	TGAACGAGCAGTCC
chr7	3229897	3229898	chr7:3229898:A:C	rs7785135	A	C	A	Sox1.mouse_HMG_4	13	1	+	7.313638849499632	3.715557298927866	GGAACTACAATTCA
chr7	3265734	3265735	chr7:3265735:C:G	rs73043673	C	G	C	Sox1.mouse_HMG_4	1	1	-	4.451215549315585	-2.457539229999635	GGAACAGGCAGTCA
chr7	3279766	3279767	chr7:3279767:T:C	rs10239408	T	C	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr7	3404553	3404554	chr7:3404554:A:C	rs60243572	A	C	C	Sox1.mouse_HMG_4	11	1	-	8.067747479098792	4.553593376692482	TGAATATTCTTTCA
chr7	3862619	3862620	chr7:3862620:C:G	rs79055492	C	G	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	3979782	3979783	chr7:3979783:G:C	rs377009800	G	C	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	4050561	4050562	chr7:4050562:A:G	rs28458813	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr7	4071986	4071987	chr7:4071987:T:C	rs11976085	T	C	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	4072027	4072028	chr7:4072028:C:T	rs73671514	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	4091699	4091700	chr7:4091700:T:G	rs13223052	T	G	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	4097863	4097864	chr7:4097864:T:G	rs10229320	T	G	g	Sox1.mouse_HMG_4	3	1	-	10.547208864206878	6.756723108465641	CGAATGACTATTCA
chr7	4338737	4338738	chr7:4338738:T:A	rs886668	T	A	T	Sox1.mouse_HMG_4	9	1	-	7.382307722563304	0.5065385894390231	AGAATAAAAATTCA
chr7	4613106	4613107	chr7:4613107:G:A	rs909319591	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr7	4726145	4726146	chr7:4726146:A:G	rs73305304	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	4726179	4726180	chr7:4726180:T:C	rs150285812	T	C	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr7	4757124	4757125	chr7:4757125:C:T	rs148352982	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.217954886246826	-2.6907998930683945	GGAACAGGCATTCC
chr7	5129924	5129925	chr7:5129925:G:A	rs6971656	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	5294577	5294578	chr7:5294578:G:A	rs6965716	G	A	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr7	5494966	5494967	chr7:5494967:C:T	rs4320462	C	T	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	5494998	5494999	chr7:5494999:C:T	rs1157071490	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	5677629	5677630	chr7:5677630:C:G	rs852402	C	G	g	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr7	6325956	6325957	chr7:6325957:C:T	rs73339258	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr7	6328667	6328668	chr7:6328668:G:A	rs368232605	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	6383278	6383279	chr7:6383279:G:T	chr7:6383279:G:T	G	T	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr7	6747099	6747100	chr7:6747100:C:T	rs111706670	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr7	7158857	7158858	chr7:7158858:G:A	rs12666790	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	7733207	7733208	chr7:7733208:G:A	rs17136863	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr7	7844522	7844523	chr7:7844523:C:G	rs11769053	C	G	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr7	7868457	7868458	chr7:7868458:G:T	rs770475054	G	T	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr7	7936704	7936705	chr7:7936705:G:T	rs36101630	G	T	G	Sox1.mouse_HMG_4	10	1	+	7.2325225213269215	10.597343408829927	TGAATCCACAGTCA
chr7	7948580	7948581	chr7:7948581:T:C	rs6947392	T	C	T	Sox1.mouse_HMG_4	11	1	-	7.657826315161359	11.024087126942618	TGAATATATATACA
chr7	7986179	7986180	chr7:7986180:A:G	rs37988	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	8211891	8211892	chr7:8211892:T:C	rs3779364	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr7	8288211	8288212	chr7:8288212:A:C	rs2215889	A	C	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr7	8363676	8363677	chr7:8363677:C:G	rs4034617	C	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	8386421	8386422	chr7:8386422:G:A	rs10269013	G	A	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	8485112	8485113	chr7:8485113:C:G	rs146993199	C	G	-	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	8601615	8601616	chr7:8601616:T:C	rs10237876	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	8939811	8939812	chr7:8939812:A:T	rs2194774	A	T	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr7	8985070	8985071	chr7:8985071:A:G	rs2192599	A	G	A	Sox1.mouse_HMG_4	4	1	-	8.47529356780215	5.753276748974751	TGAATAGTCCTTCA
chr7	10266053	10266054	chr7:10266054:G:A	rs140978709	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	10794442	10794443	chr7:10794443:G:T	rs28681162	G	T	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr7	10919934	10919935	chr7:10919935:G:A	rs4720916	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	11658164	11658165	chr7:11658165:G:C	rs75633346	G	C	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	11896811	11896812	chr7:11896812:C:T	rs9648139	C	T	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	12312473	12312474	chr7:12312474:T:C	rs58650349	T	C	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	12495155	12495156	chr7:12495156:G:A	rs13242204	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr7	12552457	12552458	chr7:12552458:A:G	rs58702782	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr7	12655461	12655462	chr7:12655462:A:G	rs150638043	A	G	A	Sox1.mouse_HMG_4	6	1	-	11.202668562406476	10.680454947166298	TGAACTTCTATTCA
chr7	12919786	12919787	chr7:12919787:T:C	rs35966640	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	13115152	13115153	chr7:13115153:G:T	rs7790770	G	T	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	13188623	13188624	chr7:13188624:A:G	rs11979053	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr7	13188643	13188644	chr7:13188644:G:C	rs78968368	G	C	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	13563875	13563876	chr7:13563876:A:C	rs117228249	A	C	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr7	13664232	13664233	chr7:13664233:T:A	rs7799196	T	A	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	13749493	13749494	chr7:13749494:T:C	rs4719380	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr7	13912478	13912479	chr7:13912479:G:A	rs1859507	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr7	13920416	13920417	chr7:13920417:T:C	rs73274824	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.138203063887103	1.4161862450597038	TAAATGGACATTCC
chr7	14238170	14238171	chr7:14238171:A:C	rs59415036	A	C	A	Sox1.mouse_HMG_4	2	1	+	10.354406059139349	3.4456512798241263	TGAATTGTAATTCC
chr7	14403409	14403410	chr7:14403410:A:T	rs10950522	A	T	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr7	14424979	14424980	chr7:14424980:C:A	rs17777395	C	A	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	14464860	14464861	chr7:14464861:C:T	rs10247453	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	14698373	14698374	chr7:14698374:A:G	rs1568846	A	G	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	14717979	14717980	chr7:14717980:C:T	rs189352869	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	14747704	14747705	chr7:14747705:C:A	rs1723250	C	A	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	15137675	15137676	chr7:15137676:A:T	rs13233550	A	T	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr7	15358017	15358018	chr7:15358018:T:C	rs6461170	T	C	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	15465262	15465263	chr7:15465263:C:T	rs113690243	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	15593780	15593781	chr7:15593781:G:C	rs10486765	G	C	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr7	15682623	15682624	chr7:15682624:C:T	rs16878585	C	T	C	Sox1.mouse_HMG_4	7	1	+	4.608660250592427	4.8465730897776105	TGTATAACCATGCA
chr7	15856558	15856559	chr7:15856559:G:A	rs76279145	G	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr7	16023194	16023195	chr7:16023195:G:A	rs1528145	G	A	G	Sox1.mouse_HMG_4	12	1	-	8.126833153503386	1.2180783741881651	TGAACTGACATTCC
chr7	16412337	16412338	chr7:16412338:T:C	rs55746209	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr7	16417249	16417250	chr7:16417250:C:T	rs79240539	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr7	16428868	16428869	chr7:16428869:A:G	rs77037574	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr7	16541168	16541169	chr7:16541169:C:T	rs10263413	C	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr7	16685194	16685195	chr7:16685195:G:C	rs2293395	G	C	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr7	16685221	16685222	chr7:16685222:A:G	rs73679834	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	16713399	16713400	chr7:16713400:T:C	rs79242998	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.084508091687934	-2.8029118181162627	TTAACGCACATTCA
chr7	16713409	16713410	chr7:16713410:T:C	rs1231160829	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr7	16727906	16727907	chr7:16727907:T:C	rs697526	T	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	16793801	16793802	chr7:16793802:C:G	rs1997116	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr7	17022967	17022968	chr7:17022968:G:A	rs1403794	G	A	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr7	17022985	17022986	chr7:17022986:A:T	rs137950804	A	T	A	Sox1.mouse_HMG_4	5	1	-	7.151965524394995	7.7918526178718714	TGAGTTTACATTCA
chr7	17221577	17221578	chr7:17221578:A:G	rs10273347	A	G	a	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr7	17300532	17300533	chr7:17300533:G:C	rs713150	G	C	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr7	17402260	17402261	chr7:17402261:T:C	rs376351000	T	C	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr7	17727229	17727230	chr7:17727230:T:C	rs146604144	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr7	17784515	17784516	chr7:17784516:T:G	rs12539189	T	G	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr7	17932549	17932550	chr7:17932550:T:C	rs77154237	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr7	18000615	18000616	chr7:18000616:G:T	rs12699947	G	T	T	Sox1.mouse_HMG_4	1	1	+	6.762787475759897	-0.14596730355532284	TGAATCTAAATTCC
chr7	18000640	18000641	chr7:18000641:C:T	rs6957876	C	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	18193834	18193835	chr7:18193835:G:T	rs1178328	G	T	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr7	18212258	18212259	chr7:18212259:A:G	rs1919315	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.661389529807194	0.7739696200029968	TGTATTGTTATTCA
chr7	18389102	18389103	chr7:18389103:T:C	rs10950700	T	C	T	Sox1.mouse_HMG_4	7	1	-	8.159155904453558	7.207728916491729	TGAAAAAACATTCA
chr7	18779182	18779183	chr7:18779183:A:G	rs10280633	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	18821516	18821517	chr7:18821517:A:G	rs2520361	A	G	G	Sox1.mouse_HMG_4	11	1	-	4.563098849392775	-2.3173160647947944	TGTATCACCATTCA
chr7	18821523	18821524	chr7:18821524:A:G	rs2588633	A	G	G	Sox1.mouse_HMG_4	4	1	-	4.563098849392775	1.841082030565376	TGTATCACCATTCA
chr7	19092083	19092084	chr7:19092084:G:C	rs17140644	G	C	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	19103123	19103124	chr7:19103124:A:C	rs57763555	A	C	A	Sox1.mouse_HMG_4	3	1	+	8.393712838374862	4.60322708263362	TGAATAATCTTTCA
chr7	20040805	20040806	chr7:20040806:A:G	rs7783402	A	G	G	Sox1.mouse_HMG_4	10	1	-	12.142189769797596	5.266420636673317	TGAACAAATATTCA
chr7	20040811	20040812	chr7:20040812:G:C	rs28525332	G	C	G	Sox1.mouse_HMG_4	4	1	-	12.142189769797596	8.018124606126417	TGAACAAATATTCA
chr7	20352750	20352751	chr7:20352751:A:G	rs2214441	A	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	20399350	20399351	chr7:20399351:T:C	rs17365498	T	C	T	Sox1.mouse_HMG_4	0	1	+	6.488720610827678	2.5871708636530784	TGATTTCATATTCA
chr7	20447240	20447241	chr7:20447241:A:C	rs116920512	A	C	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	20928464	20928465	chr7:20928465:A:T	rs6962325	A	T	A	Sox1.mouse_HMG_4	10	1	-	5.849729041905353	-1.0260400912189296	TGAATTCAAATTAA
chr7	21108058	21108059	chr7:21108059:A:C	rs11974269	A	C	A	Sox1.mouse_HMG_4	10	1	-	4.685244604168919	1.3204237166659125	TGATTAGACATGCA
chr7	21365075	21365076	chr7:21365076:C:G	rs183341459	C	G	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr7	21620026	21620027	chr7:21620027:T:C	rs56029521	T	C	T	Sox1.mouse_HMG_4	11	1	+	3.913743511843835	-2.966671402343734	CGAACAGGCATTCC
chr7	22008272	22008273	chr7:22008273:G:A	rs1534772	G	A	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	22109177	22109178	chr7:22109178:C:T	rs3813380	C	T	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr7	22234730	22234731	chr7:22234731:T:A	rs12700363	T	A	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	22378366	22378367	chr7:22378367:C:T	rs78356215	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	22432756	22432757	chr7:22432757:T:C	rs2077295	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.394874739430977	0.5074548296267782	TCAATTTTCATTCA
chr7	22704181	22704182	chr7:22704182:G:A	rs34198632	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	22746683	22746684	chr7:22746684:A:G	rs10240921	A	G	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr7	22865619	22865620	chr7:22865620:G:A	rs17147378	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr7	22865662	22865663	chr7:22865663:G:A	rs17147383	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	22989788	22989789	chr7:22989789:T:C	rs73084116	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.728322686001784	-2.159097223802413	TGAATAGCTGGGCA
chr7	23357409	23357410	chr7:23357410:A:G	rs78503057	A	G	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	23465618	23465619	chr7:23465619:C:A	rs141928217	C	A	C	Sox1.mouse_HMG_4	5	1	-	3.303689170281668	3.1055812994101295	TGAATGGGCTTGCA
chr7	23473276	23473277	chr7:23473277:G:C	rs4279506	G	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	23497336	23497337	chr7:23497337:G:T	rs75940335	G	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr7	23759097	23759098	chr7:23759098:T:C	rs12670018	T	C	T	Sox1.mouse_HMG_4	4	1	+	11.024087126942618	8.30207030811522	TGAATATATATGCA
chr7	23853199	23853200	chr7:23853200:C:T	rs73090810	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.001752193664492	7.723769012491891	TGAACGATTAGTCC
chr7	23853215	23853216	chr7:23853216:A:C	rs12671414	A	C	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	24718541	24718542	chr7:24718542:T:C	rs874540	T	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	24878203	24878204	chr7:24878204:C:G	rs114998384	C	G	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr7	24948873	24948874	chr7:24948874:C:T	rs112921647	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	24966494	24966495	chr7:24966495:G:A	rs79856291	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	25032738	25032739	chr7:25032739:A:C	rs2391084	A	C	C	Sox1.mouse_HMG_4	9	1	+	4.531387203256091	-2.3443819298681907	TGAATAAACAATCC
chr7	25070434	25070435	chr7:25070435:C:G	rs17150861	C	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr7	25124642	25124643	chr7:25124643:T:G	rs11769363	T	G	G	Sox1.mouse_HMG_4	2	1	-	3.9340663356892405	-2.9746884436259773	TGAGCTCCCATTCA
chr7	25177025	25177026	chr7:25177026:G:T	rs13223514	G	T	g	Sox1.mouse_HMG_4	8	1	-	8.486820534276042	7.728132536537598	AGAATAGTCATTCA
chr7	25179621	25179622	chr7:25179622:C:T	rs3801894	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr7	25379848	25379849	chr7:25379849:C:G	rs79041996	C	G	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	25711770	25711771	chr7:25711771:G:T	rs11973825	G	T	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr7	25929070	25929071	chr7:25929071:T:C	rs75629292	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	26159101	26159102	chr7:26159102:G:T	rs188335105	G	T	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	26200270	26200271	chr7:26200271:G:A	rs1049408223	G	A	G	Sox1.mouse_HMG_4	12	1	-	6.444964681835504	-0.46379009747971534	GGAATTCTTATTCC
chr7	26284885	26284886	chr7:26284886:A:G	rs10273457	A	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	26648045	26648046	chr7:26648046:G:T	rs78811675	G	T	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	26815208	26815209	chr7:26815209:A:G	rs12532796	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr7	26815250	26815251	chr7:26815251:A:G	rs3801830	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	26910667	26910668	chr7:26910668:G:A	rs10244751	G	A	G	Sox1.mouse_HMG_4	8	1	-	4.316214242890393	4.175182944563253	TGTATGACCAGTCA
chr7	27351245	27351246	chr7:27351246:G:A	rs4722691	G	A	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	27521370	27521371	chr7:27521371:G:A	rs940526	G	A	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr7	27552245	27552246	chr7:27552246:G:A	rs192485547	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr7	27698197	27698198	chr7:27698198:C:A	rs75492233	C	A	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	27784438	27784439	chr7:27784439:T:C	rs73684053	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	28003654	28003655	chr7:28003655:T:A	rs56311485	T	A	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	28163905	28163906	chr7:28163906:T:C	rs66595885	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	28292799	28292800	chr7:28292800:T:C	chr7:28292800:T:C	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.163616301074911	0.28784716795062937	TGAATTTACCTTCA
chr7	28292812	28292813	chr7:28292813:G:T	rs1016712101	G	T	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr7	28318374	28318375	chr7:28318375:A:C	rs7811922	A	C	C	Sox1.mouse_HMG_4	13	1	+	7.594111297859971	3.9960297472882056	GGAATATCCATGCA
chr7	28503614	28503615	chr7:28503615:T:C	rs78755701	T	C	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	29071240	29071241	chr7:29071241:A:T	rs17675986	A	T	T	Sox1.mouse_HMG_4	2	1	+	4.143772010542057	-2.764982768773163	TGAAAGGATATGCA
chr7	29311766	29311767	chr7:29311767:A:G	rs11975583	A	G	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr7	29419015	29419016	chr7:29419016:G:A	rs9648361	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr7	29480425	29480426	chr7:29480426:G:A	rs1476991	G	A	g	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr7	30020180	30020181	chr7:30020181:A:C	rs141962732	A	C	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr7	30057935	30057936	chr7:30057936:T:C	rs62446683	T	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr7	30083528	30083529	chr7:30083529:A:G	rs17158618	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	30093751	30093752	chr7:30093752:A:G	rs56348425	A	G	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	30237458	30237459	chr7:30237459:C:T	rs7785597	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr7	30476195	30476196	chr7:30476196:A:G	rs17770244	A	G	A	Sox1.mouse_HMG_4	13	1	+	5.233434990482377	-1.6493101254955924	TGAACAAATATTGA
chr7	31373526	31373527	chr7:31373527:T:A	rs1006230	T	A	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	31448827	31448828	chr7:31448828:G:A	rs117443663	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr7	31786480	31786481	chr7:31786481:A:G	rs13247743	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr7	32069547	32069548	chr7:32069548:C:T	rs30597	C	T	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	32164682	32164683	chr7:32164683:C:T	rs12154834	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	32248746	32248747	chr7:32248747:C:G	rs56405980	C	G	C	Sox1.mouse_HMG_4	9	1	-	6.991931890374506	3.4809836447532305	TGAATTATAGTGCA
chr7	32248769	32248770	chr7:32248770:C:T	rs60086427	C	T	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr7	32470939	32470940	chr7:32470940:G:A	rs10232269	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	32470953	32470954	chr7:32470954:C:T	rs56405289	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr7	32512624	32512625	chr7:32512625:G:T	rs6462372	G	T	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	32512667	32512668	chr7:32512668:A:T	rs67739505	A	T	a	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr7	32873022	32873023	chr7:32873023:G:A	rs9639668	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	33130057	33130058	chr7:33130058:G:A	rs79503896	G	A	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	33196433	33196434	chr7:33196434:G:T	rs17170104	G	T	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr7	33215994	33215995	chr7:33215995:C:G	rs367912793	C	G	C	Sox1.mouse_HMG_4	1	1	-	6.8967570226127375	-0.011997756702483153	GGAATCAGCATTCA
chr7	33685298	33685299	chr7:33685299:G:C	rs4720134	G	C	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	33883951	33883952	chr7:33883952:A:G	rs12673065	A	G	A	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr7	35259583	35259584	chr7:35259584:G:A	chr7:35259584:G:A	G	A	G	Sox1.mouse_HMG_4	11	1	-	3.657638341458422	10.53805325564599	GGAATAGGCATCCA
chr7	35263548	35263549	chr7:35263549:T:C	rs11765568	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr7	35453567	35453568	chr7:35453568:T:C	rs343020	T	C	-	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr7	36085370	36085371	chr7:36085371:T:C	rs1882059	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr7	36119710	36119711	chr7:36119711:G:A	rs945054478	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	36264072	36264073	chr7:36264073:C:T	rs196568	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	36393558	36393559	chr7:36393559:A:G	rs197359	A	G	a	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	36812480	36812481	chr7:36812481:C:A	rs28479947	C	A	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr7	36861437	36861438	chr7:36861438:C:T	rs117950694	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	36863985	36863986	chr7:36863986:G:A	rs146367742	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	36864028	36864029	chr7:36864029:G:A	rs149381408	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr7	36892061	36892062	chr7:36892062:T:C	rs35182547	T	C	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr7	37063109	37063110	chr7:37063110:T:A	rs752677	T	A	T	Sox1.mouse_HMG_4	2	1	-	3.9092455494629332	-2.9995092298522845	AGAACTGGCATTCA
chr7	37145829	37145830	chr7:37145830:A:G	rs10257460	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	37208717	37208718	chr7:37208718:T:G	chr7:37208718:T:G	T	G	T	Sox1.mouse_HMG_4	5	1	-	3.9381543561071375	0.37843885250117437	TGAATACCCAGCCA
chr7	37831561	37831562	chr7:37831562:C:G	rs28660576	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr7	37943213	37943214	chr7:37943214:C:G	rs534418626	C	G	C	Sox1.mouse_HMG_4	12	1	+	7.104603790660107	0.19584901134488586	TGAACACCAATTCC
chr7	38070791	38070792	chr7:38070792:C:T	rs939666	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr7	38127521	38127522	chr7:38127522:T:A	rs9918503	T	A	A	Sox1.mouse_HMG_4	2	1	-	10.558977361864125	3.6502225825489063	TGAATACACATTCC
chr7	38295029	38295030	chr7:38295030:A:G	rs73353484	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.727138809904268	0.8255890627296683	TGAACAGAAGTGCA
chr7	38463422	38463423	chr7:38463423:C:A	rs1019288	C	A	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr7	38776886	38776887	chr7:38776887:G:A	rs4236355	G	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr7	38797369	38797370	chr7:38797370:C:A	rs11972387	C	A	-	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr7	38866925	38866926	chr7:38866926:T:C	rs145869199	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.258772293756373	0.35722254658177266	TGAATGGATAGACA
chr7	39078641	39078642	chr7:39078642:T:C	rs1534415	T	C	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	39279071	39279072	chr7:39279072:G:A	rs55928878	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr7	39323475	39323476	chr7:39323476:C:T	chr7:39323476:C:T	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	39507973	39507974	chr7:39507974:T:C	rs6969739	T	C	C	Sox1.mouse_HMG_4	10	1	+	7.193303451700612	0.3175343185763311	TGAAGTTACATTCA
chr7	39624332	39624333	chr7:39624333:A:G	rs77655063	A	G	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr7	39638122	39638123	chr7:39638123:G:A	rs2158547	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr7	39896552	39896553	chr7:39896553:A:G	rs138445432	A	G	a	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr7	40307069	40307070	chr7:40307070:A:G	rs6967242	A	G	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	40896434	40896435	chr7:40896435:T:A	rs140722152	T	A	T	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr7	40986830	40986831	chr7:40986831:A:G	rs2214882	A	G	G	Sox1.mouse_HMG_4	2	1	+	4.793896086885401	-2.1148586924298183	TGAACTACCTTTCA
chr7	41034698	41034699	chr7:41034699:G:C	rs6974447	G	C	G	Sox1.mouse_HMG_4	10	1	-	4.255116158243496	7.76606440386477	TGAATGGACACGCA
chr7	41246258	41246259	chr7:41246259:A:G	rs7796964	A	G	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr7	41975940	41975941	chr7:41975941:A:T	rs80225546	A	T	A	Sox1.mouse_HMG_4	2	1	+	7.024824897785242	0.11607011847002124	TGAAATATAATTCA
chr7	41994801	41994802	chr7:41994802:G:A	rs2141173	G	A	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	41994810	41994811	chr7:41994811:C:T	rs17640060	C	T	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr7	41994850	41994851	chr7:41994851:C:G	rs113461862	C	G	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	42123869	42123870	chr7:42123870:C:T	rs699502	C	T	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr7	42174496	42174497	chr7:42174497:T:G	rs73688665	T	G	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	42189911	42189912	chr7:42189912:G:A	rs12374756	G	A	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	42197575	42197576	chr7:42197576:A:T	rs1480933502	A	T	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr7	42274314	42274315	chr7:42274315:C:T	rs73311788	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr7	42457758	42457759	chr7:42457759:T:C	rs10278993	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	42549190	42549191	chr7:42549191:C:T	rs11971095	C	T	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr7	42590731	42590732	chr7:42590732:G:T	rs1394554549	G	T	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	43038372	43038373	chr7:43038373:T:A	rs1423974337	T	A	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr7	43278258	43278259	chr7:43278259:C:T	rs66693536	C	T	C	Sox1.mouse_HMG_4	6	1	-	4.4502437995335296	4.36866307010624	GGAATCGCTGTTCA
chr7	43298779	43298780	chr7:43298780:T:G	rs78019282	T	G	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr7	43552902	43552903	chr7:43552903:C:T	rs9648531	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	43938942	43938943	chr7:43938943:G:A	rs58422153	G	A	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	44258542	44258543	chr7:44258543:G:A	rs35138556	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	44317187	44317188	chr7:44317188:T:A	rs12702079	T	A	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr7	44541332	44541333	chr7:44541333:G:A	rs148928284	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	44700588	44700589	chr7:44700589:G:C	rs1402714000	G	C	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr7	44704074	44704075	chr7:44704075:G:C	rs12671663	G	C	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	44987770	44987771	chr7:44987771:A:G	rs6980054	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr7	44987787	44987788	chr7:44987788:T:C	rs117684649	T	C	T	Sox1.mouse_HMG_4	10	1	+	7.371516919340536	0.49574778621625426	TTAATACTTATTCA
chr7	45071351	45071352	chr7:45071352:C:A	rs10248390	C	A	C	Sox1.mouse_HMG_4	1	1	-	8.097434629724493	1.1886798504092717	TGAAAATTCATTCA
chr7	45135605	45135606	chr7:45135606:G:A	rs28558136	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	45213001	45213002	chr7:45213002:C:T	rs116903763	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	45581775	45581776	chr7:45581776:T:C	rs6957861	T	C	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr7	45646343	45646344	chr7:45646344:C:G	rs111785980	C	G	C	Sox1.mouse_HMG_4	12	1	+	14.909283478321093	8.000528699005873	TGAATGGTCATTCA
chr7	45697977	45697978	chr7:45697978:A:T	rs117148748	A	T	A	Sox1.mouse_HMG_4	9	1	+	6.464716697183228	-0.4110524359410519	TGAACTCCAATTCC
chr7	45722352	45722353	chr7:45722353:A:C	rs3735666	A	C	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	46068262	46068263	chr7:46068263:C:T	rs12667040	C	T	C	Sox1.mouse_HMG_4	12	1	+	10.029348961914524	3.120594182599305	TGAATTCCCATGCA
chr7	46145318	46145319	chr7:46145319:C:T	rs62451989	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr7	46145339	46145340	chr7:46145340:C:T	rs547477697	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	46165564	46165565	chr7:46165565:G:A	rs17172639	G	A	G	Sox1.mouse_HMG_4	6	1	-	8.185132075749188	8.707345690989364	TGAACACTCATGCA
chr7	46165576	46165577	chr7:46165577:T:C	rs10236743	T	C	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	47369822	47369823	chr7:47369823:C:T	rs114683117	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	47370327	47370328	chr7:47370328:C:A	rs2462626	C	A	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr7	47442458	47442459	chr7:47442459:G:A	rs1623328	G	A	A	Sox1.mouse_HMG_4	10	1	+	6.819256643231404	3.30830839761013	GGAATTCTCAGTCA
chr7	47539432	47539433	chr7:47539433:C:G	rs334504	C	G	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	47639005	47639006	chr7:47639006:C:T	rs78034597	C	T	c	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	47689873	47689874	chr7:47689874:C:T	rs4724612	C	T	C	Sox1.mouse_HMG_4	7	1	+	4.734445517985551	4.972358357170735	TGAACTGCTTTTCA
chr7	47734366	47734367	chr7:47734367:T:C	rs6945610	T	C	C	Sox1.mouse_HMG_4	3	1	-	5.233434990482378	-1.6539849193218201	TCAACAAATATTCA
chr7	47940612	47940613	chr7:47940613:G:C	rs138173041	G	C	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	48040984	48040985	chr7:48040985:T:A	rs2037482	T	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	48390918	48390919	chr7:48390919:C:T	rs78542004	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr7	48421465	48421466	chr7:48421466:G:A	rs4257961	G	A	g	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	48868460	48868461	chr7:48868461:C:A	rs17132740	C	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	49024121	49024122	chr7:49024122:G:A	rs7777324	G	A	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr7	49216059	49216060	chr7:49216060:C:T	rs73110683	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	49507542	49507543	chr7:49507543:C:T	rs113116821	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	49875481	49875482	chr7:49875482:T:C	rs13245999	T	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr7	50414691	50414692	chr7:50414692:T:C	rs73695643	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	50450598	50450599	chr7:50450599:C:T	rs370151804	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.48225136144251	0.5734965821272884	CGAATCTTCATTCA
chr7	50473044	50473045	chr7:50473045:T:C	rs7803247	T	C	T	Sox1.mouse_HMG_4	10	1	+	9.919833446187406	3.044064313063126	GGAATTCACATTCA
chr7	50615174	50615175	chr7:50615175:G:A	rs7810039	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr7	50621586	50621587	chr7:50621587:A:G	rs2237440	A	G	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	50633410	50633411	chr7:50633411:A:G	rs75532911	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	50633428	50633429	chr7:50633429:G:C	rs80055045	G	C	G	Sox1.mouse_HMG_4	12	1	-	7.163616301074911	0.25486152175969035	TGAATTTACTTTCA
chr7	50692472	50692473	chr7:50692473:G:A	rs2299154	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr7	50692511	50692512	chr7:50692512:C:T	rs2299155	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr7	50795953	50795954	chr7:50795954:T:A	rs11983539	T	A	T	Sox1.mouse_HMG_4	7	1	+	4.844226371039445	4.579982286492443	TGAATAGTCATTAC
chr7	50912142	50912143	chr7:50912143:G:A	rs58425530	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	51340144	51340145	chr7:51340145:G:A	rs2329729	G	A	a	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	52476144	52476145	chr7:52476145:A:G	rs2192003	A	G	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	52709124	52709125	chr7:52709125:G:A	rs1729843	G	A	A	Sox1.mouse_HMG_4	6	1	-	7.14025848098447	7.662472096224648	TGAATACATTTTCA
chr7	52874215	52874216	chr7:52874216:T:G	rs67620524	T	G	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	52956079	52956080	chr7:52956080:A:C	rs1581696	A	C	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr7	54465316	54465317	chr7:54465317:T:C	rs7806749	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr7	54773807	54773808	chr7:54773808:T:C	rs1534737	T	C	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	55005322	55005323	chr7:55005323:G:A	rs73420705	G	A	g	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr7	55087678	55087679	chr7:55087679:C:T	rs759170	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	55087697	55087698	chr7:55087698:A:G	rs149863094	A	G	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr7	55127612	55127613	chr7:55127613:A:T	rs190745793	A	T	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr7	55158231	55158232	chr7:55158232:C:G	rs17336709	C	G	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	55180266	55180267	chr7:55180267:C:T	rs845559	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	55375109	55375110	chr7:55375110:C:T	rs10282700	C	T	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr7	64656559	64656560	chr7:64656560:C:A	rs6974242	C	A	c	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	64656560	64656561	chr7:64656561:A:G	rs6955970	A	G	a	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr7	64685445	64685446	chr7:64685446:G:A	rs28879694	G	A	g	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr7	64737070	64737071	chr7:64737071:A:G	rs13230353	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	65438730	65438731	chr7:65438731:G:A	rs17711208	G	A	g	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr7	65967974	65967975	chr7:65967975:G:A	rs62470934	G	A	.	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	66308032	66308033	chr7:66308033:A:G	rs73146620	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	67019171	67019172	chr7:67019172:C:T	rs964154588	C	T	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	67020073	67020074	chr7:67020074:C:T	rs3962048	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr7	67020080	67020081	chr7:67020081:G:C	rs3980718	G	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr7	67059760	67059761	chr7:67059761:T:C	rs4236210	T	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr7	67128126	67128127	chr7:67128127:A:G	rs116210943	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr7	67304993	67304994	chr7:67304994:C:T	rs113751830	C	T	.	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	67433494	67433495	chr7:67433495:T:C	rs4357188	T	C	N	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr7	67992583	67992584	chr7:67992584:G:A	rs17144995	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr7	68089090	68089091	chr7:68089091:G:C	rs141326067	G	C	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr7	68183852	68183853	chr7:68183853:C:A	rs73148196	C	A	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr7	68600392	68600393	chr7:68600393:C:T	rs78405970	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	68900320	68900321	chr7:68900321:C:T	rs74908972	C	T	C	Sox1.mouse_HMG_4	6	1	+	6.8611960210048055	7.3834096362449815	TGAATGCCCATCCA
chr7	68948354	68948355	chr7:68948355:C:T	rs11762441	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr7	69025164	69025165	chr7:69025165:A:G	rs10254414	A	G	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr7	69439900	69439901	chr7:69439901:G:A	rs10243693	G	A	A	Sox1.mouse_HMG_4	12	1	-	7.802420828134335	0.8936660488191144	TGTATTGTCATTCA
chr7	69577733	69577734	chr7:69577734:T:A	rs10268457	T	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	69577737	69577738	chr7:69577738:G:A	rs2865116	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr7	70037329	70037330	chr7:70037330:A:G	rs6961682	A	G	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	70436838	70436839	chr7:70436839:A:G	rs17141610	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr7	70573009	70573010	chr7:70573010:C:T	rs1013870	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr7	70736621	70736622	chr7:70736622:A:G	rs73181096	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr7	70913400	70913401	chr7:70913401:C:T	rs7800104	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	70913420	70913421	chr7:70913421:T:C	rs7786437	T	C	T	Sox1.mouse_HMG_4	6	1	+	4.0529216804309645	3.5307080651907876	TGAAAGTCCAGTCA
chr7	71166033	71166034	chr7:71166034:G:A	rs10261209	G	A	A	Sox1.mouse_HMG_4	6	1	-	10.766117596249444	11.288331211489623	TGAATACTTATGCA
chr7	71179323	71179324	chr7:71179324:T:C	rs2707420	T	C	C	Sox1.mouse_HMG_4	0	1	+	5.217653378688628	1.316103631514028	TGAACCAATGTTCA
chr7	71344340	71344341	chr7:71344341:G:A	rs7385083	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	71508973	71508974	chr7:71508974:A:G	rs6943641	A	G	a	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr7	71628982	71628983	chr7:71628983:T:A	rs10265750	T	A	T	Sox1.mouse_HMG_4	8	1	+	5.24398462405045	4.626327924639147	TGAACCACTGTTCA
chr7	72275928	72275929	chr7:72275929:A:G	rs1914385	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr7	73726840	73726841	chr7:73726841:G:C	rs2030921	G	C	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr7	73851915	73851916	chr7:73851916:T:A	rs10271009	T	A	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr7	74568726	74568727	chr7:74568727:C:G	rs7809575	C	G	c	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr7	74568733	74568734	chr7:74568734:T:G	rs28524605	T	G	t	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr7	74582170	74582171	chr7:74582171:A:G	rs78569025	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr7	74582203	74582204	chr7:74582204:C:T	rs2267813	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	74874624	74874625	chr7:74874625:C:T	rs1637335	C	T	.	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr7	74964219	74964220	chr7:74964220:C:T	rs1369701063	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr7	75659039	75659040	chr7:75659040:G:C	rs1881134	G	C	g	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	75668242	75668243	chr7:75668243:G:A	rs74566505	G	A	g	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr7	75776802	75776803	chr7:75776803:G:A	rs62475532	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr7	75776848	75776849	chr7:75776849:G:A	rs117140329	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	75779684	75779685	chr7:75779685:C:T	rs116956800	C	T	c	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr7	76291173	76291174	chr7:76291174:A:G	rs116425192	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr7	76297457	76297458	chr7:76297458:G:C	rs767862879	G	C	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr7	77269912	77269913	chr7:77269913:C:T	rs56269513	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr7	77513899	77513900	chr7:77513900:C:T	rs6976567	C	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr7	77651539	77651540	chr7:77651540:C:T	rs117126436	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	78373185	78373186	chr7:78373186:A:G	rs10245751	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr7	78417405	78417406	chr7:78417406:C:G	rs138877802	C	G	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr7	79459366	79459367	chr7:79459367:C:T	rs111263904	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr7	79504997	79504998	chr7:79504998:C:A	rs140698381	C	A	C	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	79531337	79531338	chr7:79531338:C:T	rs4132578	C	T	.	Sox1.mouse_HMG_4	7	1	-	9.371995649699272	10.3234226376611	TGAATTGGAAGTCA
chr7	79532452	79532453	chr7:79532453:G:A	rs4730912	G	A	.	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr7	80140734	80140735	chr7:80140735:T:A	rs1013942	T	A	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	80184935	80184936	chr7:80184936:C:G	rs6969850	C	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	80265212	80265213	chr7:80265213:A:G	rs306710	A	G	G	Sox1.mouse_HMG_4	8	1	-	6.7303918631038195	6.871423161430959	CGACTGAATATTCA
chr7	80597568	80597569	chr7:80597569:C:T	rs7807607	C	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr7	81144038	81144039	chr7:81144039:G:C	rs327725	G	C	G	Sox1.mouse_HMG_4	8	1	-	7.512707048927765	1.4507141431302462	TGAATTACCAGGCA
chr7	81164542	81164543	chr7:81164543:C:A	rs567272	C	A	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr7	81420711	81420712	chr7:81420712:T:C	rs141332486	T	C	T	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr7	81501408	81501409	chr7:81501409:C:T	rs114860626	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	81501450	81501451	chr7:81501451:A:T	rs574530234	A	T	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	81956680	81956681	chr7:81956681:A:C	chr7:81956681:A:C	A	C	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	82388413	82388414	chr7:82388414:C:G	rs3757629	C	G	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr7	83211896	83211897	chr7:83211897:A:G	rs11773318	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	83484366	83484367	chr7:83484367:A:G	rs2255872	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	83699290	83699291	chr7:83699291:C:T	rs1174394	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	85171163	85171164	chr7:85171164:C:T	rs4727099	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	85396780	85396781	chr7:85396781:A:T	rs2077770	A	T	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr7	85704379	85704380	chr7:85704380:A:C	rs62462206	A	C	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	85711339	85711340	chr7:85711340:C:T	rs10244696	C	T	T	Sox1.mouse_HMG_4	6	1	-	4.729947913849713	4.648367184422426	GGAATAGTTATTCT
chr7	86612325	86612326	chr7:86612326:T:C	rs1395887	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	86647459	86647460	chr7:86647460:T:C	rs78984554	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr7	86647468	86647469	chr7:86647469:A:G	rs117751879	A	G	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	86981617	86981618	chr7:86981618:G:C	rs885996	G	C	C	Sox1.mouse_HMG_4	6	1	+	5.32556535347774	4.395805649534204	TGAACCGCTAGTCA
chr7	87312627	87312628	chr7:87312628:T:G	rs185522336	T	G	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	87600988	87600989	chr7:87600989:C:T	rs35265821	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	88664994	88664995	chr7:88664995:A:G	rs117645612	A	G	A	Sox1.mouse_HMG_4	0	1	-	7.0498220058552565	3.148272258680656	TGACTAGCAATGCA
chr7	88738671	88738672	chr7:88738672:C:A	rs2718398	C	A	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr7	88942991	88942992	chr7:88942992:C:T	rs17165643	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr7	89770833	89770834	chr7:89770834:C:A	rs10952971	C	A	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	90411809	90411810	chr7:90411810:T:C	rs17862173	T	C	T	Sox1.mouse_HMG_4	7	1	+	5.312745014080454	5.074832174895271	TTAACATTCATTCA
chr7	90430854	90430855	chr7:90430855:A:G	rs12704536	A	G	A	Sox1.mouse_HMG_4	6	1	-	7.017939221684483	6.495725606444306	TGAATTTATATCCA
chr7	90961417	90961418	chr7:90961418:A:G	rs546665869	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr7	90987787	90987788	chr7:90987788:A:G	rs802404	A	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	91344533	91344534	chr7:91344534:T:C	rs117523806	T	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr7	91357742	91357743	chr7:91357743:G:A	rs9918512	G	A	A	Sox1.mouse_HMG_4	8	1	-	4.17606719529232	4.035035896965181	TGAATACTCGTACA
chr7	91674877	91674878	chr7:91674878:G:A	rs75522589	G	A	G	Sox1.mouse_HMG_4	0	1	-	3.7460444776562003	7.647594224830801	CGAATGGCTATTCT
chr7	91941759	91941760	chr7:91941760:A:G	rs10227225	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr7	92043993	92043994	chr7:92043994:A:T	rs10234434	A	T	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	92057474	92057475	chr7:92057475:A:G	rs7791138	A	G	G	Sox1.mouse_HMG_4	10	1	-	7.112083842170044	0.23631470904576357	TGAATTAATATGCC
chr7	92635678	92635679	chr7:92635679:T:C	rs2282979	T	C	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr7	92666102	92666103	chr7:92666103:C:G	rs2282985	C	G	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr7	92903995	92903996	chr7:92903996:A:G	rs2157924	A	G	G	Sox1.mouse_HMG_4	4	1	-	7.107272834793531	4.3852560159661325	TAAATACATATTCA
chr7	93021965	93021966	chr7:93021966:A:T	rs112671289	A	T	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr7	93701856	93701857	chr7:93701857:A:C	rs10261231	A	C	a	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	94087901	94087902	chr7:94087902:C:T	rs114792959	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	94087903	94087904	chr7:94087904:G:A	rs574531844	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr7	94400669	94400670	chr7:94400670:C:T	rs3814967	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr7	95018246	95018247	chr7:95018247:C:A	rs35614722	C	A	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	95089061	95089062	chr7:95089062:C:T	rs539209045	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	95170217	95170218	chr7:95170218:G:A	chr7:95170218:G:A	G	A	g	Sox1.mouse_HMG_4	6	1	+	4.730344666689304	4.648763937262014	TGAACAGAACTTCA
chr7	95434503	95434504	chr7:95434504:C:T	rs577797279	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	95582141	95582142	chr7:95582142:G:A	rs181789619	G	A	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	96017761	96017762	chr7:96017762:A:G	rs112569838	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	96667302	96667303	chr7:96667303:G:A	rs4729273	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	97020209	97020210	chr7:97020210:C:A	rs12533469	C	A	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	97107880	97107881	chr7:97107881:G:C	rs142539132	G	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr7	97641822	97641823	chr7:97641823:T:A	chr7:97641823:T:A	T	A	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	97819441	97819442	chr7:97819442:T:A	rs12704945	T	A	.	Sox1.mouse_HMG_4	6	1	-	4.166881027987089	3.8409156687110206	TGAATGACCATGTA
chr7	98107883	98107884	chr7:98107884:G:A	rs9641224	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr7	98164253	98164254	chr7:98164254:G:A	rs117153597	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr7	98175521	98175522	chr7:98175522:C:T	rs117853622	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	98213478	98213479	chr7:98213479:T:C	rs10230846	T	C	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr7	98496212	98496213	chr7:98496213:T:C	rs59859011	T	C	T	Sox1.mouse_HMG_4	4	1	+	10.99503633041638	8.27301951158898	GGAATAGTAATTCA
chr7	98567352	98567353	chr7:98567353:C:T	rs111529804	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr7	98669677	98669678	chr7:98669678:T:C	rs142458768	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr7	98755228	98755229	chr7:98755229:G:A	rs576484944	G	A	G	Sox1.mouse_HMG_4	8	1	-	6.47677604535847	6.335744747031329	TGACTTCTCATGCA
chr7	98755254	98755255	chr7:98755255:G:A	rs79271999	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr7	98806029	98806030	chr7:98806030:T:G	rs6943459	T	G	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr7	98841824	98841825	chr7:98841825:G:A	rs115132809	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	99045676	99045677	chr7:99045677:G:A	rs117145131	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr7	99557487	99557488	chr7:99557488:T:C	rs181273825	T	C	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	99557491	99557492	chr7:99557492:T:C	rs1294688330	T	C	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr7	100053302	100053303	chr7:100053303:C:T	rs77329218	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	100113416	100113417	chr7:100113417:G:A	rs4134903	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr7	100153657	100153658	chr7:100153658:G:T	rs3736590	G	T	.	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr7	100542837	100542838	chr7:100542838:G:A	rs541884242	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr7	101132704	101132705	chr7:101132705:A:G	rs2227673	A	G	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr7	101165665	101165666	chr7:101165666:A:C	rs546284319	A	C	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr7	101582949	101582950	chr7:101582950:C:T	rs7786803	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr7	101632925	101632926	chr7:101632926:C:T	rs55968636	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	101926662	101926663	chr7:101926663:C:G	rs80171896	C	G	C	Sox1.mouse_HMG_4	8	1	+	4.016258546951574	-2.045734358845943	TGAATGTCCAGTCT
chr7	101967508	101967509	chr7:101967509:A:G	rs973693348	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr7	102085357	102085358	chr7:102085358:T:C	rs367026	T	C	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr7	102094407	102094408	chr7:102094408:A:T	rs201443	A	T	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	102094431	102094432	chr7:102094432:A:G	rs201444	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	102164847	102164848	chr7:102164848:G:A	rs446513	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr7	102416163	102416164	chr7:102416164:G:A	rs79932953	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr7	102675750	102675751	chr7:102675751:C:T	rs879847323	C	T	N	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	103151363	103151364	chr7:103151364:A:G	rs11760826	A	G	g	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	103151397	103151398	chr7:103151398:T:C	rs148450522	T	C	t	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr7	103501255	103501256	chr7:103501256:T:C	rs17152161	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	103539147	103539148	chr7:103539148:A:G	rs362746	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	103717865	103717866	chr7:103717866:G:A	rs56364137	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr7	103912837	103912838	chr7:103912838:T:C	rs2299401	T	C	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr7	103930225	103930226	chr7:103930226:T:C	rs6954870	T	C	C	Sox1.mouse_HMG_4	13	1	-	4.311134554231019	-2.57161056174695	TGAAAGGCCATGCA
chr7	104160723	104160724	chr7:104160724:T:A	rs3808009	T	A	T	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	104826516	104826517	chr7:104826517:G:A	rs4073894	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	104918366	104918367	chr7:104918367:G:C	rs10276653	G	C	G	Sox1.mouse_HMG_4	12	1	-	7.219634697062434	0.310879917747213	TGAAGTTCCATTCA
chr7	105202512	105202513	chr7:105202513:T:C	rs6972563	T	C	T	Sox1.mouse_HMG_4	7	1	+	4.844226371039445	4.606313531854264	TGAATAGTCATTTC
chr7	105219656	105219657	chr7:105219657:G:C	rs68113831	G	C	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	105439598	105439599	chr7:105439599:T:C	rs75658413	T	C	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	105590071	105590072	chr7:105590072:A:G	rs111832639	A	G	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	105674289	105674290	chr7:105674290:G:A	rs76148892	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	105737997	105737998	chr7:105737998:G:A	rs655399	G	A	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr7	105759203	105759204	chr7:105759204:C:A	rs16871986	C	A	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	105808445	105808446	chr7:105808446:T:C	rs148635086	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	105978147	105978148	chr7:105978148:T:C	rs77447334	T	C	T	Sox1.mouse_HMG_4	8	1	-	4.906032038955331	-0.3972728691037446	TGAACAATAATTCT
chr7	105983315	105983316	chr7:105983316:G:A	rs138219859	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr7	106065864	106065865	chr7:106065865:G:A	rs78402621	G	A	G	Sox1.mouse_HMG_4	13	1	-	4.089607980650751	0.8049444152445471	TGAATGAACTTTCC
chr7	106244622	106244623	chr7:106244623:T:C	rs7456187	T	C	-	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr7	106282076	106282077	chr7:106282077:A:G	rs1319313	A	G	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr7	106286251	106286252	chr7:106286252:C:T	rs145782855	C	T	-	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	106286287	106286288	chr7:106286288:G:A	rs114382471	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr7	106318110	106318111	chr7:106318111:A:G	rs79751113	A	G	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	106733199	106733200	chr7:106733200:C:T	rs342298	C	T	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	106866620	106866621	chr7:106866621:T:A	rs3823963	T	A	A	Sox1.mouse_HMG_4	6	1	-	6.697908016421597	6.371942657145529	TTAATTAAAATTCA
chr7	106866634	106866635	chr7:106866635:A:T	rs3757714	A	T	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr7	107001677	107001678	chr7:107001678:C:T	rs7786720	C	T	c	Sox1.mouse_HMG_4	8	1	+	5.456047018236807	5.315015719909668	TGAACAGACATTAA
chr7	107167740	107167741	chr7:107167741:T:C	rs895917808	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	107167775	107167776	chr7:107167776:G:C	rs1329836235	G	C	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr7	107167787	107167788	chr7:107167788:G:A	rs146380744	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr7	107167789	107167790	chr7:107167790:T:C	rs191105691	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr7	107207644	107207645	chr7:107207645:C:T	rs116687749	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	107581383	107581384	chr7:107581384:A:G	rs116008940	A	G	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	107681220	107681221	chr7:107681221:T:A	rs3801943	T	A	T	Sox1.mouse_HMG_4	9	1	-	4.705843566794517	-2.1699255663297645	TGAACTTTCACTCA
chr7	107972106	107972107	chr7:107972107:G:A	rs143733415	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	108309082	108309083	chr7:108309083:T:C	rs2216258	T	C	C	Sox1.mouse_HMG_4	9	1	-	10.316947809563866	6.9521269220608595	TGAATGACAATGCA
chr7	108358589	108358590	chr7:108358590:G:A	rs2284285	G	A	G	Sox1.mouse_HMG_4	11	1	+	6.845955622435101	3.479694810653842	TGACTGGTAATGCA
chr7	108368657	108368658	chr7:108368658:G:A	rs17155581	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.360106220405215	6.882319835645393	TGAACACGAAGTCA
chr7	109503725	109503726	chr7:109503726:C:T	rs62471101	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	109949155	109949156	chr7:109949156:C:T	rs2245022	C	T	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr7	110371923	110371924	chr7:110371924:G:A	rs55814644	G	A	G	Sox1.mouse_HMG_4	7	1	-	11.550864315748118	11.7887771549333	TGAACAACAATTCA
chr7	111077189	111077190	chr7:111077190:T:A	rs13238762	T	A	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr7	111140414	111140415	chr7:111140415:A:G	rs4730479	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr7	111459768	111459769	chr7:111459769:T:G	rs185896336	T	G	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	111832983	111832984	chr7:111832984:G:A	rs10238664	G	A	A	Sox1.mouse_HMG_4	10	1	+	4.854875006353774	1.3439267607324996	TGGATAATTAGTCA
chr7	112086990	112086991	chr7:112086991:C:T	rs62474294	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	112282475	112282476	chr7:112282476:A:G	rs10249953	A	G	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr7	112337054	112337055	chr7:112337055:A:G	rs10247540	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	112360465	112360466	chr7:112360466:T:C	rs77220385	T	C	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr7	113071515	113071516	chr7:113071516:A:G	rs2251629	A	G	A	Sox1.mouse_HMG_4	3	1	+	7.602039194445479	0.7146192846412813	TCAATAATAATTCA
chr7	113087265	113087266	chr7:113087266:T:C	rs117341018	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.60705670965442	1.2422358221514125	GGAATAGCCATTTA
chr7	113087267	113087268	chr7:113087268:G:A	rs1599792	G	A	G	Sox1.mouse_HMG_4	7	1	-	4.60705670965442	4.844969548839605	GGAATAGCCATTTA
chr7	113117889	113117890	chr7:113117890:A:G	rs2272261	A	G	A	Sox1.mouse_HMG_4	0	1	-	7.315634059663291	3.414084312488691	TGAACTCCTGTTCA
chr7	113659162	113659163	chr7:113659163:C:T	rs74599644	C	T	C	Sox1.mouse_HMG_4	1	1	-	10.972062758550651	4.063307979235429	TGAATTGTTATTCC
chr7	113710305	113710306	chr7:113710306:C:T	rs10953737	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr7	114112998	114112999	chr7:114112999:C:T	rs13246909	C	T	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr7	114921866	114921867	chr7:114921867:G:A	rs73441211	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.752997089644933	-2.1557576896702884	TGAGTAAACGTTCA
chr7	114923483	114923484	chr7:114923484:C:T	rs139790140	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr7	115357121	115357122	chr7:115357122:A:G	rs12706030	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	115985948	115985949	chr7:115985949:A:G	rs372190420	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	116172323	116172324	chr7:116172324:A:G	rs10953810	A	G	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	116213915	116213916	chr7:116213916:T:A	rs186568668	T	A	T	Sox1.mouse_HMG_4	2	1	-	7.5042621290328855	0.5955073497176635	TGATTTACCATTCA
chr7	116227714	116227715	chr7:116227715:A:G	rs561876105	A	G	A	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr7	116501775	116501776	chr7:116501776:G:T	rs76633992	G	T	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	116589168	116589169	chr7:116589169:T:C	chr7:116589169:T:C	T	C	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr7	116642266	116642267	chr7:116642267:T:C	rs2040545	T	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr7	117269245	117269246	chr7:117269246:G:A	rs7786419	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr7	117531699	117531700	chr7:117531700:T:C	rs4148696	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	117835269	117835270	chr7:117835270:C:G	rs11977378	C	G	C	Sox1.mouse_HMG_4	7	1	-	6.393917517276975	7.371675750600625	TGAATTAGTGTGCA
chr7	117835273	117835274	chr7:117835274:T:C	rs11980943	T	C	C	Sox1.mouse_HMG_4	3	1	-	6.393917517276975	-0.4935023925272224	TGAATTAGTGTGCA
chr7	118397697	118397698	chr7:118397698:C:T	rs10261795	C	T	C	Sox1.mouse_HMG_4	0	1	+	6.773014799521587	10.674564546696184	CGAATTTACAGTCA
chr7	118652012	118652013	chr7:118652013:T:G	rs6950823	T	G	T	Sox1.mouse_HMG_4	2	1	-	4.316214242890393	-2.5925405364248286	TAAATGACCAGTCA
chr7	121015621	121015622	chr7:121015622:G:T	rs4730984	G	T	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr7	121874271	121874272	chr7:121874272:T:C	rs73434996	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	122380704	122380705	chr7:122380705:T:A	rs929295	T	A	T	Sox1.mouse_HMG_4	10	1	+	7.041609540028309	0.1658404069040278	TGAATATAAGTGCA
chr7	122437126	122437127	chr7:122437127:A:G	rs3807869	A	G	A	Sox1.mouse_HMG_4	7	1	-	7.512548217667676	7.274635378482493	TAAATACTCATTCA
chr7	122588751	122588752	chr7:122588752:T:C	rs6974720	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.473834523588478	-0.4089105923894909	TGAATCCAAAGTCA
chr7	122887361	122887362	chr7:122887362:A:G	rs114278337	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	123129561	123129562	chr7:123129562:T:C	rs13243580	T	C	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr7	123129573	123129574	chr7:123129574:G:A	rs13229376	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	123202968	123202969	chr7:123202969:A:G	rs2222512	A	G	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr7	123293939	123293940	chr7:123293940:C:T	rs773440573	C	T	C	Sox1.mouse_HMG_4	0	1	+	6.1585445419225024	10.060094289097103	CGAATGCATATGCA
chr7	123397832	123397833	chr7:123397833:C:T	rs10278912	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr7	123397869	123397870	chr7:123397870:G:C	rs10279201	G	C	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr7	123604955	123604956	chr7:123604956:G:A	rs7798658	G	A	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	123655909	123655910	chr7:123655910:C:T	rs7779099	C	T	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	123655945	123655946	chr7:123655946:T:C	chr7:123655946:T:C	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr7	124840451	124840452	chr7:124840452:A:G	rs13228116	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	124997120	124997121	chr7:124997121:G:A	rs113996189	G	A	G	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr7	125603497	125603498	chr7:125603498:T:G	rs80198066	T	G	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr7	125677276	125677277	chr7:125677277:G:A	rs4731260	G	A	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	125760716	125760717	chr7:125760717:T:A	rs73430609	T	A	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr7	125879281	125879282	chr7:125879282:G:A	chr7:125879282:G:A	G	A	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	125879281	125879282	chr7:125879282:G:C	rs11761154	G	C	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	125945597	125945598	chr7:125945598:A:G	rs2040655	A	G	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	127350890	127350891	chr7:127350891:T:C	rs6967758	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	127406417	127406418	chr7:127406418:T:G	rs2402859	T	G	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr7	127437271	127437272	chr7:127437272:T:C	rs10250993	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	127505608	127505609	chr7:127505609:G:A	rs186918454	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	127690689	127690690	chr7:127690690:A:G	rs55694225	A	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr7	127715316	127715317	chr7:127715317:G:A	rs35121681	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr7	128267387	128267388	chr7:128267388:C:T	rs35854831	C	T	C	Sox1.mouse_HMG_4	11	1	-	4.111814154087142	0.7455533423058835	TGAATGTTCCTGCA
chr7	128272385	128272386	chr7:128272386:T:G	rs116904807	T	G	T	Sox1.mouse_HMG_4	0	1	+	3.26311447043304	-0.334223902338568	TGAATGCCCATCCC
chr7	128575660	128575661	chr7:128575661:T:G	rs12673060	T	G	T	Sox1.mouse_HMG_4	2	1	-	4.8201081670687	-2.08864661224652	TGAATAGTTAAGCA
chr7	128729101	128729102	chr7:128729102:G:A	rs12531956	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr7	129259396	129259397	chr7:129259397:C:T	rs9641849	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	129462223	129462224	chr7:129462224:T:G	rs4731579	T	G	T	Sox1.mouse_HMG_4	1	1	-	7.736284614458868	7.736284614458868	TAAATGGACATTCA
chr7	129650718	129650719	chr7:129650719:G:A	rs11761434	G	A	G	Sox1.mouse_HMG_4	7	1	+	6.727989695412853	7.67941668337468	CGAATAGGTAGTCA
chr7	129665450	129665451	chr7:129665451:A:G	rs62489293	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	129739172	129739173	chr7:129739173:T:C	rs10277673	T	C	T	Sox1.mouse_HMG_4	4	1	+	9.766543334054438	7.044526515227041	TGAATTTAAATGCA
chr7	129951422	129951423	chr7:129951423:G:T	rs970038890	G	T	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	130025954	130025955	chr7:130025955:C:T	rs73144757	C	T	C	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr7	130461531	130461532	chr7:130461532:G:T	rs17164981	G	T	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr7	130792073	130792074	chr7:130792074:T:C	rs10954285	T	C	C	Sox1.mouse_HMG_4	13	1	-	7.5434523761103405	0.6607072601323711	TGAATGAATAGGCA
chr7	130949716	130949717	chr7:130949717:G:T	rs6959008	G	T	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr7	131154518	131154519	chr7:131154519:A:C	rs4731757	A	C	a	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr7	131204251	131204252	chr7:131204252:A:T	rs4731763	A	T	T	Sox1.mouse_HMG_4	10	1	-	10.225541858367512	3.3497727252432314	TGACTACATATTCA
chr7	131204255	131204256	chr7:131204256:G:A	rs4731764	G	A	G	Sox1.mouse_HMG_4	6	1	-	10.225541858367512	10.74775547360769	TGACTACATATTCA
chr7	131221018	131221019	chr7:131221019:C:A	rs7796129	C	A	A	Sox1.mouse_HMG_4	1	1	-	6.0715006624843255	-0.8372541168308951	TGACTTCATATGCA
chr7	131835722	131835723	chr7:131835723:C:T	rs12706996	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	132185837	132185838	chr7:132185838:A:C	rs6946056	A	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr7	132320645	132320646	chr7:132320646:A:G	rs4141805	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.465863123050903	-2.409906010073377	GGAAAGGTCATTCA
chr7	132442201	132442202	chr7:132442202:G:A	rs77712827	G	A	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	132502136	132502137	chr7:132502137:G:A	rs17224513	G	A	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	132534134	132534135	chr7:132534135:T:C	rs12540584	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr7	132534181	132534182	chr7:132534182:G:A	rs11769821	G	A	g	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	132847970	132847971	chr7:132847971:A:G	rs2032949	A	G	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr7	132847997	132847998	chr7:132847998:G:A	rs4731913	G	A	A	Sox1.mouse_HMG_4	4	1	-	5.044047585037371	7.76606440386477	TGAACGGACAGGCA
chr7	133239324	133239325	chr7:133239325:A:G	rs78007866	A	G	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	133433205	133433206	chr7:133433206:T:C	rs2059375	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	133585362	133585363	chr7:133585363:G:A	rs2432637	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr7	133884517	133884518	chr7:133884518:C:T	chr7:133884518:C:T	C	T	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr7	134208837	134208838	chr7:134208838:G:C	rs408150	G	C	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr7	134212105	134212106	chr7:134212106:C:G	rs4732008	C	G	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	134365072	134365073	chr7:134365073:A:G	rs1643076	A	G	G	Sox1.mouse_HMG_4	2	1	+	5.020684516135718	-1.8880702631795008	TGAACATCCAGTCC
chr7	134365077	134365078	chr7:134365078:C:T	rs1643077	C	T	C	Sox1.mouse_HMG_4	7	1	+	5.020684516135718	5.258597355320902	TGAACATCCAGTCC
chr7	134480870	134480871	chr7:134480871:T:C	rs56908017	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr7	134599915	134599916	chr7:134599916:C:T	rs67233141	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr7	134672435	134672436	chr7:134672436:G:A	rs73166651	G	A	A	Sox1.mouse_HMG_4	12	1	-	12.283221068124739	5.374466288809519	TGAACAAACATTCA
chr7	134672436	134672437	chr7:134672437:A:G	rs73166652	A	G	A	Sox1.mouse_HMG_4	11	1	-	12.283221068124739	5.40280615393717	TGAACAAACATTCA
chr7	134708143	134708144	chr7:134708144:T:A	rs11764930	T	A	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr7	135178735	135178736	chr7:135178736:C:T	rs292536	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr7	135208271	135208272	chr7:135208272:C:A	rs292598	C	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	135208773	135208774	chr7:135208774:G:C	rs749742110	G	C	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	135208806	135208807	chr7:135208807:G:C	rs760892889	G	C	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr7	135267702	135267703	chr7:135267703:T:C	rs6977330	T	C	C	Sox1.mouse_HMG_4	10	1	+	7.823810815024451	0.9480416819001698	TGACTAATTATGCA
chr7	135510492	135510493	chr7:135510493:C:T	chr7:135510493:C:T	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	135510952	135510953	chr7:135510953:A:G	rs17481974	A	G	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	135740442	135740443	chr7:135740443:C:T	rs75170699	C	T	C	Sox1.mouse_HMG_4	10	1	-	6.856422617427806	3.3454743718065316	CGAATGTCTAGTCA
chr7	135771339	135771340	chr7:135771340:T:C	rs6943769	T	C	T	Sox1.mouse_HMG_4	10	1	+	10.87752793643077	4.00175880330649	TGAATTACCATGCA
chr7	135771343	135771344	chr7:135771344:G:A	rs6961992	G	A	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr7	135857050	135857051	chr7:135857051:T:C	rs77218190	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr7	136216796	136216797	chr7:136216797:G:T	rs2349456	G	T	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr7	136245596	136245597	chr7:136245597:G:A	rs17244627	G	A	G	Sox1.mouse_HMG_4	3	1	-	3.769392408216751	0.6724582541537931	GGACTGGCCATGCA
chr7	136635885	136635886	chr7:136635886:G:A	rs116856445	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	136704292	136704293	chr7:136704293:G:A	rs10259281	G	A	a	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr7	137091619	137091620	chr7:137091620:T:C	rs79574641	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr7	137246080	137246081	chr7:137246081:T:G	rs322303	T	G	C	Sox1.mouse_HMG_4	13	1	-	5.648403329461142	2.0503217788893764	TGAATGTGAAGGCA
chr7	137522674	137522675	chr7:137522675:C:T	rs28711988	C	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr7	137522693	137522694	chr7:137522694:C:T	rs76746384	C	T	C	Sox1.mouse_HMG_4	7	1	+	11.842555655883352	12.080468495068533	TGAACATCTATTCA
chr7	137564166	137564167	chr7:137564167:G:A	rs1723090	G	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	137682512	137682513	chr7:137682513:G:C	rs76771190	G	C	G	Sox1.mouse_HMG_4	7	1	-	4.9338008765681325	3.956042643244481	TGAACATCTATTAA
chr7	138226323	138226324	chr7:138226324:A:G	rs61272163	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	138294920	138294921	chr7:138294921:C:T	rs141732774	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr7	138330063	138330064	chr7:138330064:G:A	rs62488633	G	A	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr7	139233088	139233089	chr7:139233089:A:C	rs7782122	A	C	A	Sox1.mouse_HMG_4	4	1	-	6.898504255746063	0.05242227324748305	TGACTAAGCAGTCA
chr7	139620777	139620778	chr7:139620778:G:A	rs11980408	G	A	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr7	139702687	139702688	chr7:139702688:C:T	rs978751268	C	T	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr7	139886458	139886459	chr7:139886459:G:C	rs1015572	G	C	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr7	139886463	139886464	chr7:139886464:T:G	chr7:139886464:T:G	T	G	T	Sox1.mouse_HMG_4	13	1	-	4.476582123501428	0.8785005729296631	TGACAAGCCATTCA
chr7	140063704	140063705	chr7:140063705:G:A	rs35354403	G	A	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr7	140063735	140063736	chr7:140063736:A:G	rs12537086	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	140063740	140063741	chr7:140063741:G:A	rs6966903	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr7	140488579	140488580	chr7:140488580:C:T	rs73163266	C	T	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr7	140580970	140580971	chr7:140580971:C:G	rs62485839	C	G	G	Sox1.mouse_HMG_4	12	1	+	4.951982243871139	-1.9567725354440808	AGAACATATATTCA
chr7	140657340	140657341	chr7:140657341:G:A	rs2930326	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr7	140746941	140746942	chr7:140746942:G:A	rs62487906	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr7	141160810	141160811	chr7:141160811:G:A	rs6951624	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.490702868698477	7.728615707883661	TGAATCTCTATGCA
chr7	142476059	142476060	chr7:142476060:T:A	rs2855965	T	A	.	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr7	142494153	142494154	chr7:142494154:G:A	rs375250384	G	A	.	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr7	142637000	142637001	chr7:142637001:T:A	rs116303546	T	A	T	Sox1.mouse_HMG_4	9	1	-	7.3688883335651	0.4931192004408189	GGAACTGAAATTCA
chr7	142835087	142835088	chr7:142835088:T:C	rs6464533	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr7	143130860	143130861	chr7:143130861:G:A	rs315284	G	A	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	143328891	143328892	chr7:143328892:C:T	rs4725613	C	T	C	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr7	143339224	143339225	chr7:143339225:G:A	rs2272253	G	A	A	Sox1.mouse_HMG_4	7	1	-	3.7102826519018235	3.948195491087006	GGAATACCCTTTCA
chr7	143339243	143339244	chr7:143339244:C:T	rs2272252	C	T	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	144260734	144260735	chr7:144260735:C:G	rs4725646	C	G	N	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	144974583	144974584	chr7:144974584:C:T	rs146020120	C	T	C	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	145219535	145219536	chr7:145219536:G:A	rs13229449	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	146235395	146235396	chr7:146235396:C:A	rs117346049	C	A	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	147136386	147136387	chr7:147136387:G:C	rs78637660	G	C	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr7	147276877	147276878	chr7:147276878:A:G	rs17170387	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr7	147578209	147578210	chr7:147578210:G:A	rs7780313	G	A	G	Sox1.mouse_HMG_4	13	1	-	7.983531149347032	4.698867583940828	TGAACTTTCATTCC
chr7	147910274	147910275	chr7:147910275:G:A	rs10488348	G	A	g	Sox1.mouse_HMG_4	0	1	-	5.437639829065617	9.339189576240218	CGAATGAGAATGCA
chr7	148255897	148255898	chr7:148255898:T:C	rs73170577	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr7	148461436	148461437	chr7:148461437:G:A	rs73476121	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr7	148727935	148727936	chr7:148727936:A:G	rs243518	A	G	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr7	148772610	148772611	chr7:148772611:G:A	rs867963394	G	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr7	148772623	148772624	chr7:148772624:C:T	rs1029888	C	T	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr7	148772644	148772645	chr7:148772645:C:T	rs115029680	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	148883093	148883094	chr7:148883094:G:C	rs116791925	G	C	G	Sox1.mouse_HMG_4	1	1	-	5.080404009306935	11.989158788622156	TCAACTGTCATTCA
chr7	149475802	149475803	chr7:149475803:C:A	rs62491927	C	A	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr7	150351674	150351675	chr7:150351675:C:T	rs35344801	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr7	150514104	150514105	chr7:150514105:G:A	rs6974067	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr7	150718205	150718206	chr7:150718206:C:T	rs737372	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr7	150902758	150902759	chr7:150902759:T:C	rs11768123	T	C	T	Sox1.mouse_HMG_4	2	1	-	4.903951437666054	-2.004803341649165	TGAACGTTCCTTCA
chr7	151097638	151097639	chr7:151097639:G:C	rs6970547	G	C	c	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr7	151299812	151299813	chr7:151299813:A:G	rs28594720	A	G	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr7	151300050	151300051	chr7:151300051:A:G	rs1860117	A	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr7	151839094	151839095	chr7:151839095:C:T	rs6950343	C	T	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr7	151839110	151839111	chr7:151839111:C:T	rs6950351	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.929347532072053	7.651364350899452	TGAACGGCTAGGCA
chr7	151981330	151981331	chr7:151981331:G:A	rs9648731	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr7	152402500	152402501	chr7:152402501:A:C	rs71220428	A	C	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr7	152503763	152503764	chr7:152503764:G:A	rs6464234	G	A	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr7	152580045	152580046	chr7:152580046:G:A	rs6942579	G	A	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr7	152580058	152580059	chr7:152580059:A:G	rs10229374	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.286543463396446	1.5645266445690467	TGAATGGCTGGGCA
chr7	152707194	152707195	chr7:152707195:C:T	rs7799003	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr7	153128578	153128579	chr7:153128579:G:A	rs11762272	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr7	153590793	153590794	chr7:153590794:C:T	rs10235677	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr7	153944246	153944247	chr7:153944247:T:G	rs58068307	T	G	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	153944280	153944281	chr7:153944281:C:T	rs7785600	C	T	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr7	154054569	154054570	chr7:154054570:G:A	rs4725520	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr7	154185380	154185381	chr7:154185381:T:C	rs1007478434	T	C	T	Sox1.mouse_HMG_4	7	1	+	8.327286286621323	8.089373447436138	TGAATAGTTATTCT
chr7	154277962	154277963	chr7:154277963:T:G	rs13237209	T	G	T	Sox1.mouse_HMG_4	7	1	+	8.390506981589825	7.174835909080991	TGAATAATCAGGCA
chr7	154475999	154476000	chr7:154476000:C:G	rs73163045	C	G	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr7	154500448	154500449	chr7:154500449:G:C	rs11771308	G	C	g	Sox1.mouse_HMG_4	8	1	-	10.794343666065473	4.7323507602679555	GGAATTACCATTCA
chr7	154512772	154512773	chr7:154512773:C:T	rs12668377	C	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr7	154544723	154544724	chr7:154544724:G:A	rs66608004	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr7	154609119	154609120	chr7:154609120:G:A	rs13235166	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	154810965	154810966	chr7:154810966:A:G	rs6963245	A	G	a	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr7	155128560	155128561	chr7:155128561:T:G	rs73174672	T	G	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr7	155185102	155185103	chr7:155185103:C:T	rs13227528	C	T	c	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr7	155189055	155189056	chr7:155189056:C:T	rs58225134	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	155189057	155189058	chr7:155189058:T:C	rs13311302	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr7	155242831	155242832	chr7:155242832:C:T	rs62471580	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.1833747256243425	7.905391544451742	TGACCAGTTATGCA
chr7	155300700	155300701	chr7:155300701:G:A	rs9690044	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr7	155410643	155410644	chr7:155410644:T:C	rs113134543	T	C	T	Sox1.mouse_HMG_4	10	1	+	9.862549528272845	2.986780395148566	TGAATAGGAATGCA
chr7	155484247	155484248	chr7:155484248:T:C	rs6954686	T	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr7	155515756	155515757	chr7:155515757:T:C	rs10238014	T	C	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr7	155579680	155579681	chr7:155579681:T:C	rs11981614	T	C	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr7	155900574	155900575	chr7:155900575:C:T	rs3857649	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	155995128	155995129	chr7:155995129:T:C	rs35606551	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.7923956492265924	0.9049757394223954	TGAATGGCCAGGCA
chr7	156049766	156049767	chr7:156049767:A:T	rs11773543	A	T	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr7	156092448	156092449	chr7:156092449:T:G	rs56721571	T	G	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr7	156239863	156239864	chr7:156239864:T:G	rs1733658	T	G	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr7	156368855	156368856	chr7:156368856:A:G	rs10275400	A	G	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr7	156478631	156478632	chr7:156478632:G:A	rs73498445	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr7	156483320	156483321	chr7:156483321:G:T	rs6971343	G	T	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	156505131	156505132	chr7:156505132:C:T	rs76390728	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr7	156545385	156545386	chr7:156545386:C:T	rs141093751	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr7	156666679	156666680	chr7:156666680:G:A	rs76376341	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr7	157055920	157055921	chr7:157055921:C:G	rs139532867	C	G	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr7	157058108	157058109	chr7:157058109:C:T	rs116883808	C	T	.	Sox1.mouse_HMG_4	9	1	-	6.497165530722558	9.861986418225564	TGAATTCATGTGCA
chr7	157074190	157074191	chr7:157074191:A:G	rs7794791	A	G	G	Sox1.mouse_HMG_4	0	1	-	6.905646770381739	3.004097023207139	TGAATTCTCCTTCA
chr7	157084797	157084798	chr7:157084798:T:A	rs2886539	T	A	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr7	157084841	157084842	chr7:157084842:G:T	rs34467101	G	T	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr7	157253938	157253939	chr7:157253939:G:A	rs753371189	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr7	157253970	157253971	chr7:157253971:C:T	rs111389766	C	T	C	Sox1.mouse_HMG_4	1	1	-	6.278570886330148	-0.6301838929850752	CGAATTTTAGTTCA
chr7	157619331	157619332	chr7:157619332:A:G	rs10249676	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.690240980019718	1.9682241611923186	TAAATAGCCATGCA
chr7	157626718	157626719	chr7:157626719:T:C	rs117879402	T	C	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr7	157770210	157770211	chr7:157770211:G:A	rs79626657	G	A	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr7	157832751	157832752	chr7:157832752:T:C	rs59816598	T	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr7	158262293	158262294	chr7:158262294:C:T	rs7782711	C	T	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr7	158262923	158262924	chr7:158262924:T:C	rs62649324	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.2660600288724435	-0.6213598809317527	TGAATGTGTGTGCA
chr7	158546106	158546107	chr7:158546107:G:A	rs73510555	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr7	158791292	158791293	chr7:158791293:T:C	rs844522	T	C	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr7	158803614	158803615	chr7:158803615:G:A	rs2788495	G	A	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr7	159071106	159071107	chr7:159071107:C:T	chr7:159071107:C:T	C	T	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	460012	460013	chr8:460013:T:C	rs11781282	T	C	T	Sox1.mouse_HMG_4	6	1	+	10.180120633504746	9.65790701826457	TGAATTTTAAGTCA
chr8	460639	460640	chr8:460640:T:C	rs10088894	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	463287	463288	chr8:463288:A:G	rs3735923	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr8	519816	519817	chr8:519817:C:T	rs7015080	C	T	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr8	519838	519839	chr8:519839:T:C	rs114662512	T	C	T	Sox1.mouse_HMG_4	6	1	-	8.191438782161692	8.27301951158898	GGAACAATAATTCA
chr8	706007	706008	chr8:706008:T:A	rs80195455	T	A	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	853756	853757	chr8:853757:A:G	rs17667061	A	G	A	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr8	893431	893432	chr8:893432:A:T	rs17065443	A	T	A	Sox1.mouse_HMG_4	9	1	-	4.114084859916356	10.989853993040636	TGAATGGATTTGCA
chr8	998027	998028	chr8:998028:C:A	rs11782491	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr8	1045072	1045073	chr8:1045073:G:A	rs561842116	G	A	c	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr8	1070743	1070744	chr8:1070744:G:A	rs10102931	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr8	1133094	1133095	chr8:1133095:G:A	rs117152333	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	1144844	1144845	chr8:1144845:G:A	rs75402612	G	A	-	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr8	1160118	1160119	chr8:1160119:G:T	rs74696790	G	T	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	1192049	1192050	chr8:1192050:A:G	rs6558420	A	G	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr8	1252598	1252599	chr8:1252599:A:G	rs565336551	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr8	1274958	1274959	chr8:1274959:A:G	rs114606998	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.823517045031217	0.921967297856616	TGAACACTCACTCA
chr8	1278434	1278435	chr8:1278435:A:G	rs7824111	A	G	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr8	1278435	1278436	chr8:1278436:T:C	rs7827858	T	C	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr8	1382422	1382423	chr8:1382423:C:G	rs10087579	C	G	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	1382453	1382454	chr8:1382454:G:C	rs7822446	G	C	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr8	1502637	1502638	chr8:1502638:A:G	rs6996916	A	G	A	Sox1.mouse_HMG_4	13	1	+	11.614296570765692	4.7315514547877235	TGAATAATTATGCA
chr8	1537246	1537247	chr8:1537247:G:A	rs73672801	G	A	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	1735703	1735704	chr8:1735704:A:T	rs536176774	A	T	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	1746303	1746304	chr8:1746304:A:C	rs764454186	A	C	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	1843495	1843496	chr8:1843496:C:T	rs74415378	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	1843505	1843506	chr8:1843506:C:T	rs11136434	C	T	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	1843518	1843519	chr8:1843519:A:G	rs11136435	A	G	A	Sox1.mouse_HMG_4	10	1	-	7.841959289434167	0.9661901563098867	TGACCAGCAATTCA
chr8	1912033	1912034	chr8:1912034:T:C	rs12548089	T	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	1913324	1913325	chr8:1913325:C:T	rs4876273	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.367574899304378	0.45882011998915684	TGAATAAAAGTGCA
chr8	2029517	2029518	chr8:2029518:T:A	rs7463439	T	A	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr8	2096797	2096798	chr8:2096798:A:G	rs6558603	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.456047018236808	-1.4197221148874732	TAAACAGACATTCA
chr8	2111790	2111791	chr8:2111791:C:G	rs3779836	C	G	C	Sox1.mouse_HMG_4	11	1	-	5.9743686887372105	2.608107876955952	TGAATGAGAAGGCA
chr8	2149083	2149084	chr8:2149084:A:G	rs9314453	A	G	a	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr8	2149131	2149132	chr8:2149132:A:G	rs7005151	A	G	a	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr8	2226566	2226567	chr8:2226567:A:C	rs35468460	A	C	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr8	2228127	2228128	chr8:2228128:T:C	rs35659525	T	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	2228716	2228717	chr8:2228717:G:T	rs34543563	G	T	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr8	2654431	2654432	chr8:2654432:G:C	rs73488619	G	C	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	2727652	2727653	chr8:2727653:C:T	rs4273876	C	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr8	3078824	3078825	chr8:3078825:G:A	rs10081479	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	3173270	3173271	chr8:3173271:G:A	rs4875090	G	A	A	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr8	3502920	3502921	chr8:3502921:A:C	rs1499699	A	C	t	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr8	3767636	3767637	chr8:3767637:G:A	rs61296875	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr8	3849460	3849461	chr8:3849461:C:A	rs2954221	C	A	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr8	3849464	3849465	chr8:3849465:T:C	rs62482673	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	3849490	3849491	chr8:3849491:C:A	rs2954222	C	A	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr8	3888332	3888333	chr8:3888333:G:T	rs2627348	G	T	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr8	4325511	4325512	chr8:4325512:A:C	rs1394473	A	C	A	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	4325513	4325514	chr8:4325514:A:C	rs1995536	A	C	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr8	4325534	4325535	chr8:4325535:A:G	rs13261217	A	G	A	Sox1.mouse_HMG_4	0	1	-	4.520607730501542	0.6190579833269434	TGGATATTCATGCA
chr8	4388057	4388058	chr8:4388058:A:G	rs1438213	A	G	G	Sox1.mouse_HMG_4	0	1	-	5.312745014080454	1.4111952669058543	TGGACATTCATTCA
chr8	4958899	4958900	chr8:4958900:G:A	rs12674915	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr8	4967054	4967055	chr8:4967055:T:C	rs17348854	T	C	T	Sox1.mouse_HMG_4	13	1	-	6.538154672389152	-0.3445904435888174	TGAATTAGCCTTCA
chr8	5228608	5228609	chr8:5228609:A:G	rs13260370	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr8	5296223	5296224	chr8:5296224:C:T	rs11776067	C	T	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	5834326	5834327	chr8:5834327:C:T	rs7006771	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.367574899304378	0.45882011998915684	TGAATAAAAGTGCA
chr8	6191868	6191869	chr8:6191869:A:C	rs4458899	A	C	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	6306117	6306118	chr8:6306118:T:C	rs62504113	T	C	T	Sox1.mouse_HMG_4	7	1	-	4.114084859916357	3.1626578719545293	TGAATGGATAAGCA
chr8	6327963	6327964	chr8:6327964:C:T	rs4840759	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr8	6547516	6547517	chr8:6547517:A:C	rs76483883	A	C	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	6591494	6591495	chr8:6591495:C:A	rs9657426	C	A	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr8	6598018	6598019	chr8:6598019:C:T	rs2922853	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr8	6611457	6611458	chr8:6611458:T:A	rs2959806	T	A	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	6802297	6802298	chr8:6802298:A:C	rs2553724	A	C	A	Sox1.mouse_HMG_4	4	1	-	6.432010589142918	-0.41407139335566234	GGAATTCCCATGCA
chr8	6812637	6812638	chr8:6812638:G:C	rs13255666	G	C	G	Sox1.mouse_HMG_4	8	1	-	6.839510556706271	0.7775176509087534	TGAATGCACACTCA
chr8	6816935	6816936	chr8:6816936:A:G	rs9773025	A	G	G	Sox1.mouse_HMG_4	5	1	+	5.1008418382325225	4.659062615627182	TGAACATCCATTCT
chr8	6875673	6875674	chr8:6875674:G:A	rs2977772	G	A	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr8	7027601	7027602	chr8:7027602:A:C	rs6605579	A	C	.	Sox1.mouse_HMG_4	11	1	-	6.488720610827678	2.9745665084213675	TGATTTCATATTCA
chr8	8408886	8408887	chr8:8408887:A:C	rs2976921	A	C	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr8	8445449	8445450	chr8:8445450:C:G	rs2976860	C	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr8	8530982	8530983	chr8:8530983:T:C	rs11991607	T	C	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	8752369	8752370	chr8:8752370:G:A	rs17154702	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	8917864	8917865	chr8:8917865:G:A	rs76588812	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr8	8940181	8940182	chr8:8940182:C:G	rs61293336	C	G	C	Sox1.mouse_HMG_4	6	1	+	4.169062199675692	5.0988219036192275	TGATTACTCAGTCA
chr8	9050631	9050632	chr8:9050632:T:C	rs2044388	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr8	9190593	9190594	chr8:9190594:G:A	rs2929301	G	A	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	9271653	9271654	chr8:9271654:A:T	rs62493777	A	T	A	Sox1.mouse_HMG_4	13	1	+	6.656083154516639	-0.2266619614613301	TGAGTTCCCATTCA
chr8	9308541	9308542	chr8:9308542:G:A	rs403141	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	9402933	9402934	chr8:9402934:G:A	rs17149972	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	9436030	9436031	chr8:9436031:C:T	rs11989460	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	9498377	9498378	chr8:9498378:G:C	rs6601320	G	C	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	9568187	9568188	chr8:9568188:A:C	rs10088969	A	C	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr8	9902045	9902046	chr8:9902046:T:C	rs528818518	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.753860219929234	4.031843401101836	TGAATACTAATTTA
chr8	10150137	10150138	chr8:10150138:C:G	rs192847698	C	G	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr8	10313220	10313221	chr8:10313221:A:G	rs4546664	A	G	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	10313251	10313252	chr8:10313252:A:G	rs4329276	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	10354277	10354278	chr8:10354278:C:T	rs6984111	C	T	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr8	10560698	10560699	chr8:10560699:T:G	rs9692783	T	G	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	10560705	10560706	chr8:10560706:C:T	rs9693696	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr8	10560710	10560711	chr8:10560711:C:G	rs4841381	C	G	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr8	10961520	10961521	chr8:10961521:C:G	rs560657374	C	G	C	Sox1.mouse_HMG_4	6	1	+	4.47213965553372	5.401899359477255	TGAACACACAGTCC
chr8	11267576	11267577	chr8:11267577:G:A	rs17153082	G	A	G	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr8	11268195	11268196	chr8:11268196:C:T	rs73535196	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	11279094	11279095	chr8:11279095:A:G	rs6601578	A	G	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr8	11319937	11319938	chr8:11319938:C:T	rs2293856	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	11361383	11361384	chr8:11361384:A:G	rs2736277	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.255116158243496	-2.6206529748807847	TGAATGGACCTGCA
chr8	11382252	11382253	chr8:11382253:A:T	rs2736306	A	T	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr8	11474285	11474286	chr8:11474286:A:G	rs540636504	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	11532916	11532917	chr8:11532917:C:T	rs151045547	C	T	C	Sox1.mouse_HMG_4	1	1	-	4.983885323644626	-1.9248694556705923	AGAACTGTTATTCA
chr8	11539947	11539948	chr8:11539948:C:G	rs2061830	C	G	G	Sox1.mouse_HMG_4	6	1	+	7.24830413312067	8.178063837064208	TGAATACACATTTA
chr8	11552889	11552890	chr8:11552890:A:C	rs12678951	A	C	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	11605505	11605506	chr8:11605506:C:T	rs17807624	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr8	11942108	11942109	chr8:11942109:G:A	rs34225774	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	11942144	11942145	chr8:11942145:C:A	rs13260325	C	A	c	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr8	12144844	12144845	chr8:12144845:T:C	rs4840633	T	C	.	Sox1.mouse_HMG_4	3	1	-	7.948657693250922	1.061237783446723	TGAACATTAATGCA
chr8	12175265	12175266	chr8:12175266:G:T	rs62493749	G	T	g	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr8	12175274	12175275	chr8:12175275:A:G	rs375280266	A	G	a	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr8	12551067	12551068	chr8:12551068:T:C	rs10112648	T	C	.	Sox1.mouse_HMG_4	5	1	+	7.2655044509748645	4.3456760408457775	TGACTTGTTATGCA
chr8	13047463	13047464	chr8:13047464:T:C	rs552366	T	C	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr8	13077656	13077657	chr8:13077657:A:G	rs73206681	A	G	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr8	13087469	13087470	chr8:13087470:A:T	rs6531024	A	T	A	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr8	13267528	13267529	chr8:13267529:T:C	rs17128014	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr8	13352236	13352237	chr8:13352237:T:C	rs2463809	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	13491504	13491505	chr8:13491505:A:T	rs4615570	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr8	13541416	13541417	chr8:13541417:C:A	rs62492089	C	A	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr8	13651410	13651411	chr8:13651411:G:C	rs13250575	G	C	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr8	13794647	13794648	chr8:13794648:G:C	rs7017452	G	C	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	13924123	13924124	chr8:13924124:A:G	rs78402565	A	G	A	Sox1.mouse_HMG_4	10	1	-	10.402079771571598	3.526310638447317	CGAATTTTCATTCA
chr8	14315263	14315264	chr8:14315264:C:T	rs13254837	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr8	14428695	14428696	chr8:14428696:T:A	rs1903601	T	A	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	14495131	14495132	chr8:14495132:C:A	rs1947709	C	A	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr8	14666381	14666382	chr8:14666382:T:C	rs9325720	T	C	T	Sox1.mouse_HMG_4	0	1	+	10.626237944576355	6.724688197401754	TGAATTAATATTCC
chr8	14697263	14697264	chr8:14697264:T:C	rs6999260	T	C	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr8	14750720	14750721	chr8:14750721:C:T	rs28735053	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr8	14750749	14750750	chr8:14750750:T:A	rs78856523	T	A	T	Sox1.mouse_HMG_4	2	1	-	4.949488688715924	-1.9592660905992976	TGATTAGTCATGCA
chr8	14953456	14953457	chr8:14953457:G:C	rs78542705	G	C	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	15023064	15023065	chr8:15023065:T:C	rs2898406	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	15624551	15624552	chr8:15624552:A:G	rs12548857	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr8	15759136	15759137	chr8:15759137:A:G	rs13278598	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	15902374	15902375	chr8:15902375:G:A	rs10091296	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	16125231	16125232	chr8:16125232:T:C	rs12680619	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr8	16202940	16202941	chr8:16202941:A:G	rs77235920	A	G	A	Sox1.mouse_HMG_4	0	1	-	12.406433854344602	8.504884107170001	TGAACAATTATTCA
chr8	16389837	16389838	chr8:16389838:T:C	rs2163122	T	C	T	Sox1.mouse_HMG_4	3	1	-	8.034761832907854	1.1473419231036555	TGAATATTCATTTA
chr8	16747176	16747177	chr8:16747177:G:A	rs11994842	G	A	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	16754787	16754788	chr8:16754788:T:A	rs13281448	T	A	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr8	16762017	16762018	chr8:16762018:G:A	rs139391234	G	A	G	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr8	16762053	16762054	chr8:16762054:G:A	rs142982647	G	A	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr8	16771992	16771993	chr8:16771993:G:A	rs75446620	G	A	g	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr8	16968080	16968081	chr8:16968081:T:C	rs62502131	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	16996387	16996388	chr8:16996388:T:A	rs11203822	T	A	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	17019018	17019019	chr8:17019019:G:A	rs709845	G	A	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr8	17131694	17131695	chr8:17131695:C:G	rs76714504	C	G	C	Sox1.mouse_HMG_4	12	1	+	6.942318423812392	0.033563644497170975	GGAATAAGCATGCA
chr8	17184638	17184639	chr8:17184639:C:G	rs562629104	C	G	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	17217130	17217131	chr8:17217131:C:G	rs3213600	C	G	C	Sox1.mouse_HMG_4	1	1	-	5.263214779888281	-1.64553999942694	TGAACAAATAGGCA
chr8	17255048	17255049	chr8:17255049:C:G	rs192945731	C	G	C	Sox1.mouse_HMG_4	6	1	+	7.070768995062338	8.000528699005871	TGTATGCTCATTCA
chr8	17309023	17309024	chr8:17309024:T:A	rs1548352	T	A	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	17496576	17496577	chr8:17496577:C:T	rs2720546	C	T	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr8	17529321	17529322	chr8:17529322:A:G	rs2705084	A	G	A	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr8	17529344	17529345	chr8:17529345:A:G	rs2588222	A	G	A	Sox1.mouse_HMG_4	3	1	+	4.199687101446145	-2.687732808358054	TCAATTGCCAGTCA
chr8	17581206	17581207	chr8:17581207:G:A	rs2517269	G	A	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr8	17581219	17581220	chr8:17581220:A:G	rs2517270	A	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr8	17695104	17695105	chr8:17695105:T:C	rs423832	T	C	C	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr8	17766970	17766971	chr8:17766971:T:C	rs191817222	T	C	T	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr8	17911683	17911684	chr8:17911684:C:T	rs439968	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.795631287803096	-2.113123491512124	TGAATAATCACTCC
chr8	18149639	18149640	chr8:18149640:G:A	rs117370821	G	A	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr8	18219810	18219811	chr8:18219811:T:C	rs28359529	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr8	18523098	18523099	chr8:18523099:G:A	rs13274191	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr8	18608002	18608003	chr8:18608003:A:C	rs9650594	A	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr8	18614064	18614065	chr8:18614065:G:A	rs116467154	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	18662371	18662372	chr8:18662372:T:C	rs946870306	T	C	T	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr8	18775428	18775429	chr8:18775429:T:G	rs79441119	T	G	t	Sox1.mouse_HMG_4	3	1	-	7.0707689950623385	3.2802832393210988	TGAATGCTCATTGA
chr8	18775434	18775435	chr8:18775435:C:T	rs335226	C	T	c	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	18782164	18782165	chr8:18782165:G:T	rs7831166	G	T	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr8	19005048	19005049	chr8:19005049:C:T	rs574149881	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	19015097	19015098	chr8:19015098:G:T	rs115620305	G	T	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr8	19130238	19130239	chr8:19130239:A:G	rs691658	A	G	G	Sox1.mouse_HMG_4	5	1	-	8.117092303453626	5.19726389332454	TGACCTATCATTCA
chr8	19160533	19160534	chr8:19160534:T:G	rs10503648	T	G	t	Sox1.mouse_HMG_4	0	1	+	4.94582149325162	1.348483120480011	TGAACCGTAAGTCA
chr8	19226429	19226430	chr8:19226430:T:A	rs78301770	T	A	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr8	19262601	19262602	chr8:19262602:C:G	rs4320560	C	G	C	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	19262643	19262644	chr8:19262644:G:A	rs11780720	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr8	19435181	19435182	chr8:19435182:T:G	rs11997594	T	G	T	Sox1.mouse_HMG_4	2	1	-	6.586749755625502	-0.3220050236897183	TGAATTGGCATTGA
chr8	19446259	19446260	chr8:19446260:C:T	rs4922028	C	T	C	Sox1.mouse_HMG_4	9	1	-	8.152594142404642	11.51741502990765	TGAATAACCGTGCA
chr8	19446272	19446273	chr8:19446273:C:G	rs17407449	C	G	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr8	19449169	19449170	chr8:19449170:A:G	rs7814793	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr8	19627548	19627549	chr8:19627549:A:T	rs76878980	A	T	A	Sox1.mouse_HMG_4	10	1	-	4.359617975729919	-2.5161511573943622	TGAATCACCATGCC
chr8	19881366	19881367	chr8:19881367:A:G	rs7830586	A	G	A	Sox1.mouse_HMG_4	2	1	+	7.37823751264954	0.4694827333343199	TGAAATAATATTCA
chr8	19962212	19962213	chr8:19962213:C:G	rs328	C	G	C	Sox1.mouse_HMG_4	12	1	+	9.93030201374886	3.0215472344336396	TGAATAAGAAGTCA
chr8	20109704	20109705	chr8:20109705:T:C	rs9325864	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr8	20168817	20168818	chr8:20168818:C:G	rs67479548	C	G	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	20182801	20182802	chr8:20182802:G:T	rs2270645	G	T	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	20182833	20182834	chr8:20182834:G:A	rs79358029	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr8	20423485	20423486	chr8:20423486:G:C	rs13280414	G	C	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr8	20735979	20735980	chr8:20735980:A:G	rs1450291	A	G	G	Sox1.mouse_HMG_4	0	1	-	6.533852617902868	2.6323028707282674	TGACTGCTTATGCA
chr8	20953657	20953658	chr8:20953658:T:C	rs147500978	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr8	21148198	21148199	chr8:21148199:C:T	rs12676503	C	T	C	Sox1.mouse_HMG_4	12	1	+	9.65790701826457	2.7491522389493506	TGAATTCTAAGTCA
chr8	21181912	21181913	chr8:21181913:T:G	rs17093664	T	G	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	21183670	21183671	chr8:21183671:C:T	rs67785327	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr8	21687890	21687891	chr8:21687891:G:A	rs73552615	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr8	21724463	21724464	chr8:21724464:G:A	rs73554709	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	21724613	21724614	chr8:21724614:G:A	rs59774202	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr8	21757537	21757538	chr8:21757538:C:T	rs114034512	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	21944120	21944121	chr8:21944121:G:A	rs118188651	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	21959733	21959734	chr8:21959734:C:T	rs729180	C	T	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr8	22388803	22388804	chr8:22388804:C:T	rs77442380	C	T	C	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr8	22634366	22634367	chr8:22634367:A:G	rs17088488	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr8	22757765	22757766	chr8:22757766:A:G	rs7005554	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	22961624	22961625	chr8:22961625:C:T	rs17686010	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	22975549	22975550	chr8:22975550:C:T	rs888341	C	T	C	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr8	23127084	23127085	chr8:23127085:C:G	rs77837771	C	G	C	Sox1.mouse_HMG_4	6	1	-	4.877955195030543	3.948195491087006	GGAATAGTCACTCA
chr8	23356089	23356090	chr8:23356090:C:T	rs56288820	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	23384438	23384439	chr8:23384439:A:T	rs73226411	A	T	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr8	23435471	23435472	chr8:23435472:A:G	rs3736652	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr8	23514524	23514525	chr8:23514525:A:G	rs4871876	A	G	G	Sox1.mouse_HMG_4	8	1	-	4.936455735781064	5.077487034108205	TGAATAGTTAGTGA
chr8	23701710	23701711	chr8:23701711:T:C	rs749146	T	C	C	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	23726240	23726241	chr8:23726241:A:C	rs13274775	A	C	C	Sox1.mouse_HMG_4	7	1	+	8.222576449729036	8.248907695090859	AGAATAGACATTCA
chr8	23727833	23727834	chr8:23727834:G:T	rs79847589	G	T	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	23838513	23838514	chr8:23838514:A:C	rs414959	A	C	A	Sox1.mouse_HMG_4	3	1	+	4.360726855555223	0.5702410998139837	AGAATGACCAGTCA
chr8	23910353	23910354	chr8:23910354:T:C	rs1705691	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr8	24016966	24016967	chr8:24016967:C:G	rs13439112	C	G	C	Sox1.mouse_HMG_4	1	1	-	7.22569948266122	0.31694470334599933	TGACTGGCTATGCA
chr8	24367248	24367249	chr8:24367249:G:C	rs1283881222	G	C	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr8	24387868	24387869	chr8:24387869:C:T	rs115430159	C	T	T	Sox1.mouse_HMG_4	5	1	-	4.402447148434108	4.844226371039445	TGAATGGTCATTTC
chr8	24784355	24784356	chr8:24784356:C:T	rs147093063	C	T	c	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	25073651	25073652	chr8:25073652:C:T	rs138357403	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	25460254	25460255	chr8:25460255:A:G	rs969277502	A	G	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr8	25672280	25672281	chr8:25672281:A:C	rs9644100	A	C	A	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr8	26001175	26001176	chr8:26001176:A:G	rs4269551	A	G	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr8	26393165	26393166	chr8:26393166:C:T	rs3808579	C	T	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr8	26447897	26447898	chr8:26447898:C:G	rs73219825	C	G	c	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr8	26578622	26578623	chr8:26578623:G:C	rs3779913	G	C	G	Sox1.mouse_HMG_4	1	1	+	6.615609886736163	-0.2931448925790554	TGAATATGCATGCC
chr8	26663043	26663044	chr8:26663044:C:T	rs12155555	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	27451067	27451068	chr8:27451068:A:C	rs751019	A	C	A	Sox1.mouse_HMG_4	4	1	-	7.241770749509417	0.3956887670108362	GGACTTATCATTCA
chr8	27662748	27662749	chr8:27662749:A:G	rs516125	A	G	.	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr8	27732767	27732768	chr8:27732768:C:T	rs2010763	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr8	27914833	27914834	chr8:27914834:G:A	rs2727005	G	A	A	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	27988093	27988094	chr8:27988094:T:C	rs11783449	T	C	C	Sox1.mouse_HMG_4	13	1	-	6.8658418020680925	-0.01690331390987687	TGAATGCCCCTTCA
chr8	27988121	27988122	chr8:27988122:T:A	rs11783479	T	A	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr8	28146344	28146345	chr8:28146345:A:G	rs6999490	A	G	A	Sox1.mouse_HMG_4	8	1	+	9.827363787287661	4.524058879228586	GGAATACCAATTCA
chr8	28165408	28165409	chr8:28165409:C:T	rs2015443	C	T	C	Sox1.mouse_HMG_4	7	1	-	4.50462003027498	5.456047018236808	TTAACAGGCATTCA
chr8	28166909	28166910	chr8:28166910:C:T	rs2045694	C	T	C	Sox1.mouse_HMG_4	12	1	+	4.861534438273705	-2.0472203410415153	TGACCAGCTATTCC
chr8	28249943	28249944	chr8:28249944:C:T	rs113869656	C	T	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr8	28249996	28249997	chr8:28249997:G:A	rs75967863	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr8	28383624	28383625	chr8:28383625:A:G	rs75651030	A	G	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	28623950	28623951	chr8:28623951:T:C	rs7005297	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	28688909	28688910	chr8:28688910:A:G	rs148819683	A	G	A	Sox1.mouse_HMG_4	8	1	-	7.128607704304554	7.269639002631695	TGAGTACATATTCA
chr8	29111132	29111133	chr8:29111133:T:C	rs6992240	T	C	t	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr8	29195527	29195528	chr8:29195528:C:T	rs79064399	C	T	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr8	29340738	29340739	chr8:29340739:C:T	rs2341674	C	T	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	29405610	29405611	chr8:29405611:C:T	rs74845733	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	29405647	29405648	chr8:29405648:T:C	rs589635	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr8	29559045	29559046	chr8:29559046:A:G	rs185982673	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	29559848	29559849	chr8:29559849:T:C	rs549916968	T	C	T	Sox1.mouse_HMG_4	5	1	-	7.6233740639565015	7.1815948413511626	TGATTAATAATTCA
chr8	29659486	29659487	chr8:29659487:A:G	rs62501788	A	G	G	Sox1.mouse_HMG_4	9	1	+	7.9088004224142585	4.5439795349112515	TGACCACTCATTCA
chr8	29808537	29808538	chr8:29808538:T:A	rs9801752	T	A	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr8	29840916	29840917	chr8:29840917:A:T	rs6999674	A	T	A	Sox1.mouse_HMG_4	10	1	-	6.52889213000096	-0.3468770031233206	GGAATTCTTATGCA
chr8	29860359	29860360	chr8:29860360:T:C	rs13281024	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.522878436330756	0.6213286891561569	TGCATAGATATGCA
chr8	29969038	29969039	chr8:29969039:T:C	rs73564338	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.098978951831271	1.3769621330038728	CCAATGGTCATTCA
chr8	30270523	30270524	chr8:30270524:G:A	rs2958757	G	A	A	Sox1.mouse_HMG_4	8	1	-	4.663909734657897	4.522878436330758	TGAATAGACATGAA
chr8	30327653	30327654	chr8:30327654:G:T	rs1360179318	G	T	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr8	30538899	30538900	chr8:30538900:C:T	rs2915592	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	30711251	30711252	chr8:30711252:G:A	rs8190937	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	31491951	31491952	chr8:31491952:G:A	rs2681627	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	31690001	31690002	chr8:31690002:G:C	rs4733270	G	C	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr8	31930817	31930818	chr8:31930818:T:C	rs967206	T	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr8	31952905	31952906	chr8:31952906:T:C	rs406422	T	C	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr8	32084520	32084521	chr8:32084521:A:C	rs7828431	A	C	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr8	32416010	32416011	chr8:32416011:T:C	rs13261609	T	C	T	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr8	32646164	32646165	chr8:32646165:G:A	rs76692204	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	32688832	32688833	chr8:32688833:C:G	rs28587287	C	G	C	Sox1.mouse_HMG_4	13	1	+	9.80439021542193	6.519726650015727	TGAATTCCTATTCC
chr8	32983049	32983050	chr8:32983050:A:G	rs12550164	A	G	A	Sox1.mouse_HMG_4	9	1	+	7.185301765373445	3.8204808778704367	TGAATTTCCATACA
chr8	33513480	33513481	chr8:33513481:T:C	rs201589796	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr8	33513503	33513504	chr8:33513504:T:G	rs200204620	T	G	T	Sox1.mouse_HMG_4	9	1	-	4.585604205846034	-2.290164927278248	TGAACACCCAATCA
chr8	33513510	33513511	chr8:33513511:T:A	rs959489360	T	A	T	Sox1.mouse_HMG_4	2	1	-	4.585604205846034	-2.323150573469187	TGAACACCCAATCA
chr8	33513521	33513522	chr8:33513522:T:G	chr8:33513522:T:G	T	G	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr8	33513532	33513533	chr8:33513533:C:T	rs369276091	C	T	C	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr8	34371798	34371799	chr8:34371799:A:G	rs2590469	A	G	A	Sox1.mouse_HMG_4	4	1	-	4.723226626210657	2.0012098073832574	TGAATAGCCCTGCA
chr8	34541019	34541020	chr8:34541020:C:G	rs7826018	C	G	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	35034678	35034679	chr8:35034679:A:G	rs4613990	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	35034713	35034714	chr8:35034714:A:G	rs35709119	A	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr8	35184267	35184268	chr8:35184268:G:A	rs4739393	G	A	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr8	35634265	35634266	chr8:35634266:A:G	rs4739420	A	G	A	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	35885398	35885399	chr8:35885399:A:G	rs12681657	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	36980131	36980132	chr8:36980132:T:C	rs2970650	T	C	C	Sox1.mouse_HMG_4	7	1	-	7.717376681848218	6.76594969388639	TGAAAGAACATTCA
chr8	37034506	37034507	chr8:37034507:C:T	rs3015745	C	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr8	37078602	37078603	chr8:37078603:T:A	rs62488643	T	A	T	Sox1.mouse_HMG_4	0	1	+	7.934428948333912	1.0701867816835204	TGACCTGACATTCA
chr8	37243409	37243410	chr8:37243410:A:G	rs6985083	A	G	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	37243429	37243430	chr8:37243430:C:G	rs6468398	C	G	G	Sox1.mouse_HMG_4	10	1	-	7.47428823477802	3.9633399891567453	TGACTTATCAGTCA
chr8	37311725	37311726	chr8:37311726:T:C	rs390287	T	C	C	Sox1.mouse_HMG_4	10	1	+	7.920887991202182	1.0451188580779005	TGAACACACATGCA
chr8	37524922	37524923	chr8:37524923:G:A	rs140553828	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	37799053	37799054	chr8:37799054:G:A	rs118014737	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	37899810	37899811	chr8:37899811:G:A	chr8:37899811:G:A	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	38859273	38859274	chr8:38859274:T:C	rs16875948	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.102221066695602	1.3802042478682022	TGATTAGCAAGTCA
chr8	38894803	38894804	chr8:38894804:A:T	rs13259042	A	T	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	38933431	38933432	chr8:38933432:G:C	rs6997434	G	C	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr8	39333836	39333837	chr8:39333837:A:G	rs10097714	A	G	C	Sox1.mouse_HMG_4	11	1	+	4.5274845999929605	7.893745411774219	GGAATAAACATACA
chr8	39544491	39544492	chr8:39544492:C:T	rs58847417	C	T	.	Sox1.mouse_HMG_4	1	1	-	7.384849560523233	0.4760947812080143	TGAATGTCCAGGCA
chr8	39689972	39689973	chr8:39689973:G:A	rs34203431	G	A	G	Sox1.mouse_HMG_4	4	1	-	3.9127314661782178	6.6347482850056165	TGTACTCCCATTCA
chr8	39978062	39978063	chr8:39978063:C:T	rs2729467	C	T	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	39982918	39982919	chr8:39982919:G:T	rs78850705	G	T	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr8	40153889	40153890	chr8:40153890:G:A	rs144983731	G	A	G	Sox1.mouse_HMG_4	6	1	+	7.780797227123698	7.699216497696408	AGAATGGACATTCA
chr8	40236078	40236079	chr8:40236079:C:T	rs117826809	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	40447706	40447707	chr8:40447707:G:A	rs2730161	G	A	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr8	40447709	40447710	chr8:40447710:A:T	rs2730162	A	T	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	40698306	40698307	chr8:40698307:A:T	rs12681768	A	T	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr8	40852453	40852454	chr8:40852454:C:G	rs6987437	C	G	G	Sox1.mouse_HMG_4	6	1	-	5.510671608175598	4.580911904232063	TGAATAGAGATGCA
chr8	40866401	40866402	chr8:40866402:C:T	rs62636695	C	T	C	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	41168041	41168042	chr8:41168042:C:T	rs62642281	C	T	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr8	41218246	41218247	chr8:41218247:A:C	chr8:41218247:A:C	A	C	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr8	41264739	41264740	chr8:41264740:C:T	rs13635	C	T	T	Sox1.mouse_HMG_4	12	1	+	3.807007879398852	-3.1017468999163684	TGACTTGCCAATCA
chr8	41455992	41455993	chr8:41455993:T:C	rs4029762	T	C	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	41633259	41633260	chr8:41633260:G:A	rs34874892	G	A	G	Sox1.mouse_HMG_4	10	1	+	6.332220463177094	2.82127221755582	TGAATAAGAAGTCC
chr8	41673013	41673014	chr8:41673014:G:A	rs76382848	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	41764109	41764110	chr8:41764110:G:A	rs13263917	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr8	41778885	41778886	chr8:41778886:G:T	rs13254281	G	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr8	41778891	41778892	chr8:41778892:G:A	rs1048914467	G	A	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr8	41830528	41830529	chr8:41830529:T:C	rs1362890	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	41878054	41878055	chr8:41878055:A:G	rs148246234	A	G	A	Sox1.mouse_HMG_4	10	1	-	4.123341120561034	-2.7524280125632474	AGAATGTTCATGCA
chr8	42202705	42202706	chr8:42202706:A:G	rs8178687	A	G	a	Sox1.mouse_HMG_4	13	1	+	4.645302032296243	-2.2374430836817263	TGAATAACTAGACA
chr8	42473036	42473037	chr8:42473037:G:A	rs117798840	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr8	42803477	42803478	chr8:42803478:G:T	rs149779324	G	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr8	42952152	42952153	chr8:42952153:T:C	rs13269584	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	43253342	43253343	chr8:43253343:T:C	rs1031930	T	C	.	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr8	46119254	46119255	chr8:46119255:C:T	rs10112503	C	T	.	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr8	46956990	46956991	chr8:46956991:A:C	rs7831878	A	C	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr8	47324317	47324318	chr8:47324318:C:T	rs12541086	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr8	47353109	47353110	chr8:47353110:A:G	rs143628143	A	G	A	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr8	47498757	47498758	chr8:47498758:G:T	rs11784823	G	T	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr8	49018495	49018496	chr8:49018496:T:A	rs974781	T	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr8	49453825	49453826	chr8:49453826:G:A	rs11778061	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr8	51653932	51653933	chr8:51653933:A:G	rs6473635	A	G	G	Sox1.mouse_HMG_4	9	1	+	5.059050563101521	1.6942296755985147	TGAACCTCCAGTCA
chr8	51900636	51900637	chr8:51900637:G:T	rs78196764	G	T	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	52134567	52134568	chr8:52134568:T:A	rs55839958	T	A	T	Sox1.mouse_HMG_4	5	1	-	10.406430427531314	9.766543334054438	TGAATATAAATGCA
chr8	52264214	52264215	chr8:52264215:T:C	rs16917601	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	52467061	52467062	chr8:52467062:A:G	rs1371949	A	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	52523570	52523571	chr8:52523571:G:A	rs7820696	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	52820649	52820650	chr8:52820650:A:G	rs6473753	A	G	A	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	52877042	52877043	chr8:52877043:G:A	rs6473760	G	A	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr8	53229596	53229597	chr8:53229597:T:C	rs702764	T	C	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr8	53543754	53543755	chr8:53543755:T:C	rs2169690	T	C	T	Sox1.mouse_HMG_4	3	1	-	5.147630187383401	-1.7397897224207972	TGAACCTTCATGCA
chr8	53588356	53588357	chr8:53588357:C:G	rs78806952	C	G	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr8	53989213	53989214	chr8:53989214:C:T	rs10101289	C	T	C	Sox1.mouse_HMG_4	4	1	+	5.201493505159218	7.9235103239866165	TGAACATTTAGGCA
chr8	54940693	54940694	chr8:54940694:G:A	rs6980676	G	A	G	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr8	55486318	55486319	chr8:55486319:A:T	rs2929021	A	T	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	55648627	55648628	chr8:55648628:A:G	rs111564232	A	G	a	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr8	55937575	55937576	chr8:55937576:A:G	rs3968371	A	G	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr8	55984597	55984598	chr8:55984598:T:C	rs72653921	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	56184504	56184505	chr8:56184505:T:C	rs56933685	T	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	56511046	56511047	chr8:56511047:T:C	rs2576591	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr8	56587101	56587102	chr8:56587102:G:A	rs1440748	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr8	56868522	56868523	chr8:56868523:A:C	rs10958506	A	C	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	57213035	57213036	chr8:57213036:G:A	rs112107992	G	A	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr8	57252965	57252966	chr8:57252966:C:A	rs148362578	C	A	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	57424044	57424045	chr8:57424045:T:G	rs10086935	T	G	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	57530563	57530564	chr8:57530564:A:G	rs6471625	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr8	57602302	57602303	chr8:57602303:C:T	rs16922402	C	T	C	Sox1.mouse_HMG_4	10	1	-	8.06681232814297	4.555864082521696	TGAATAGATAGGCA
chr8	57602332	57602333	chr8:57602333:C:T	rs6995695	C	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr8	57668468	57668469	chr8:57668469:G:A	rs147903762	G	A	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr8	57748855	57748856	chr8:57748856:T:C	rs55701836	T	C	T	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr8	57751933	57751934	chr8:57751934:A:G	rs150074019	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	57751963	57751964	chr8:57751964:C:T	rs9693544	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	57751968	57751969	chr8:57751969:A:G	rs7017146	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr8	57892898	57892899	chr8:57892899:T:C	rs115455001	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.2564420919659725	0.8916212044629654	TGAATGGATAGTCT
chr8	58067931	58067932	chr8:58067932:A:G	rs79123000	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr8	58393414	58393415	chr8:58393415:G:T	rs1457049	G	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr8	58500364	58500365	chr8:58500365:G:T	rs3808607	G	T	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	59109348	59109349	chr8:59109349:C:T	rs16924609	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	59180126	59180127	chr8:59180127:T:C	rs77032204	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr8	59186438	59186439	chr8:59186439:T:C	rs10504287	T	C	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	59647920	59647921	chr8:59647921:C:T	rs60064130	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	60065758	60065759	chr8:60065759:A:T	rs73257564	A	T	A	Sox1.mouse_HMG_4	7	1	-	8.034761832907853	7.770517748360849	TTAATATTCATTCA
chr8	60155231	60155232	chr8:60155232:T:A	rs117466755	T	A	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	60183540	60183541	chr8:60183541:T:G	rs2326514	T	G	G	Sox1.mouse_HMG_4	6	1	+	4.290834519616148	4.698380608319506	TGAAGGTTCAGTCA
chr8	60568270	60568271	chr8:60568271:A:G	rs12681841	A	G	A	Sox1.mouse_HMG_4	9	1	+	6.581376752834185	3.216555865331178	TGAATGGGCATGCC
chr8	60765770	60765771	chr8:60765771:C:T	rs11986627	C	T	C	Sox1.mouse_HMG_4	7	1	+	4.50969436843338	4.747607207618563	GGAATCACCAGTCA
chr8	61056568	61056569	chr8:61056569:G:A	rs13257940	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr8	61143278	61143279	chr8:61143279:C:T	rs60235702	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.360169842999086	7.082186661826484	TGACCGTACAGTCA
chr8	61304173	61304174	chr8:61304174:G:A	rs2931297	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr8	61336098	61336099	chr8:61336099:T:G	rs73682257	T	G	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	61748263	61748264	chr8:61748264:G:A	rs2882454	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	61806692	61806693	chr8:61806693:G:C	rs73682381	G	C	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr8	62246510	62246511	chr8:62246511:T:C	rs2683777	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr8	62472873	62472874	chr8:62472874:C:T	rs74524106	C	T	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	62901700	62901701	chr8:62901701:A:C	rs113701879	A	C	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	63037860	63037861	chr8:63037861:G:A	rs67742771	G	A	G	Sox1.mouse_HMG_4	1	1	+	8.159155904453558	1.2504011251383365	TGAAAAAACATTCA
chr8	63118884	63118885	chr8:63118885:A:G	rs60941985	A	G	A	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr8	63317418	63317419	chr8:63317419:T:G	rs113690719	T	G	T	Sox1.mouse_HMG_4	9	1	-	4.829351553705609	-2.046417579418672	TGAATCATCATACA
chr8	63570250	63570251	chr8:63570251:A:T	rs80026773	A	T	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr8	63701877	63701878	chr8:63701878:C:T	rs1149476	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	63873190	63873191	chr8:63873191:A:G	rs7829237	A	G	G	Sox1.mouse_HMG_4	10	1	-	4.544213305841779	-2.331555827282502	TGAGTAGATATGCA
chr8	63892246	63892247	chr8:63892247:A:C	rs13254613	A	C	A	Sox1.mouse_HMG_4	6	1	+	4.47766389078648	3.6294849162702354	TGAATAAGGATGCA
chr8	65188870	65188871	chr8:65188871:T:A	rs7813721	T	A	T	Sox1.mouse_HMG_4	9	1	-	4.735891837316941	-2.139877295807341	TGAACTGTTATGCC
chr8	65842523	65842524	chr8:65842524:C:G	rs80064475	C	G	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr8	65929117	65929118	chr8:65929118:G:T	rs62506579	G	T	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	65943910	65943911	chr8:65943911:A:G	rs4129057	A	G	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr8	65951580	65951581	chr8:65951581:G:A	chr8:65951581:G:A	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.465763325263896	-2.4429914540513247	GGAATATTCATACA
chr8	66252852	66252853	chr8:66252853:C:T	rs13266379	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	66312775	66312776	chr8:66312776:A:G	rs16932805	A	G	A	Sox1.mouse_HMG_4	11	1	-	4.437596924665204	-2.4428179895223643	TGAACACCTATTCT
chr8	67604445	67604446	chr8:67604446:G:T	rs10808755	G	T	T	Sox1.mouse_HMG_4	6	1	+	4.798699353180688	4.391153264477331	TGACCGGTCATTCC
chr8	67641899	67641900	chr8:67641900:A:G	rs12542530	A	G	A	Sox1.mouse_HMG_4	11	1	-	7.419375839325764	0.5389609251381946	TGTATAGAAATTCA
chr8	67692991	67692992	chr8:67692992:A:G	rs564340820	A	G	A	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr8	68134386	68134387	chr8:68134387:G:A	rs3793380	G	A	G	Sox1.mouse_HMG_4	7	1	+	6.407091327199584	7.358518315161412	TGAATGTGCGTGCA
chr8	68477691	68477692	chr8:68477692:A:C	rs1850385	A	C	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr8	68636632	68636633	chr8:68636633:T:C	rs6989204	T	C	T	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	68729266	68729267	chr8:68729267:T:A	rs55821789	T	A	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr8	68843425	68843426	chr8:68843426:T:C	rs9298137	T	C	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr8	69223996	69223997	chr8:69223997:A:G	rs831715	A	G	g	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	69286778	69286779	chr8:69286779:T:A	rs283333	T	A	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	69368886	69368887	chr8:69368887:C:G	rs16935829	C	G	C	Sox1.mouse_HMG_4	1	1	-	12.221499793395672	5.312745014080454	TGAACATTCATTCA
chr8	69738320	69738321	chr8:69738321:G:A	rs10110088	G	A	a	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	70653718	70653719	chr8:70653719:G:T	rs13255886	G	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	71134604	71134605	chr8:71134605:C:T	rs13274839	C	T	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	71219190	71219191	chr8:71219191:G:A	rs1481800	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	71557814	71557815	chr8:71557815:T:C	rs28578663	T	C	C	Sox1.mouse_HMG_4	11	1	+	7.687689531222517	0.8072746170349479	TGAATGAACACTCA
chr8	71673696	71673697	chr8:71673697:T:G	rs17795839	T	G	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr8	71797761	71797762	chr8:71797762:T:G	rs28625354	T	G	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr8	71799256	71799257	chr8:71799257:G:A	rs4527926	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr8	72035019	72035020	chr8:72035020:T:G	rs13282402	T	G	.	Sox1.mouse_HMG_4	11	1	+	6.649978830871874	3.135824728465564	TGAACTGGAAGTCA
chr8	72057641	72057642	chr8:72057642:T:G	rs7825042	T	G	-	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr8	72677872	72677873	chr8:72677873:A:T	rs13267872	A	T	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr8	72734625	72734626	chr8:72734626:C:T	rs114856289	C	T	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr8	72779885	72779886	chr8:72779886:G:A	rs2251898	G	A	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr8	72822559	72822560	chr8:72822560:G:A	chr8:72822560:G:A	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.822346558088981	-2.086408221226238	TGATTCATCATTCA
chr8	72829195	72829196	chr8:72829196:T:A	rs10957622	T	A	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	72926474	72926475	chr8:72926475:G:A	rs12542842	G	A	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr8	73353752	73353753	chr8:73353753:G:T	rs17287976	G	T	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr8	73497095	73497096	chr8:73497096:T:C	rs12235061	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr8	73497330	73497331	chr8:73497331:T:G	rs78173468	T	G	T	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr8	73895136	73895137	chr8:73895137:T:C	rs33998663	T	C	T	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr8	73895163	73895164	chr8:73895164:A:G	rs143810317	A	G	a	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr8	73935524	73935525	chr8:73935525:T:C	rs11787158	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	73935552	73935553	chr8:73935553:A:G	rs190259465	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr8	75724301	75724302	chr8:75724302:G:A	rs16939148	G	A	G	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr8	75724305	75724306	chr8:75724306:G:T	rs4735694	G	T	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	75752646	75752647	chr8:75752647:G:A	rs72663514	G	A	G	Sox1.mouse_HMG_4	1	1	+	8.126036580915528	1.217281801600307	TGAAAAGCTATTCA
chr8	76224352	76224353	chr8:76224353:C:T	rs10092489	C	T	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr8	76427781	76427782	chr8:76427782:A:T	rs4434598	A	T	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr8	77041076	77041077	chr8:77041077:T:A	rs79526460	T	A	T	Sox1.mouse_HMG_4	9	1	-	6.51985976648718	-0.3559093666371016	GGAATGCACATTCC
chr8	77041085	77041086	chr8:77041086:C:T	rs10481214	C	T	C	Sox1.mouse_HMG_4	0	1	-	6.51985976648718	3.2529559726083974	GGAATGCACATTCC
chr8	77051118	77051119	chr8:77051119:C:G	rs142056618	C	G	C	Sox1.mouse_HMG_4	11	1	-	6.341860786729797	2.9755999749485387	TGAATGCTAAGGCA
chr8	77181600	77181601	chr8:77181601:C:A	rs7821178	C	A	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	77483916	77483917	chr8:77483917:G:A	rs13257595	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr8	77634478	77634479	chr8:77634479:A:G	rs1567428	A	G	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	77737155	77737156	chr8:77737156:C:T	rs1519345	C	T	T	Sox1.mouse_HMG_4	1	1	-	7.440710708836787	0.5319559295215666	TGATTAGAAATTCA
chr8	77779599	77779600	chr8:77779600:A:G	rs28572159	A	G	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr8	77880405	77880406	chr8:77880406:T:G	rs545081563	T	G	T	Sox1.mouse_HMG_4	9	1	-	6.348083140977462	-0.527685992146818	GGAATTCCCATTCC
chr8	78556554	78556555	chr8:78556555:G:C	rs74798467	G	C	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr8	78556571	78556572	chr8:78556572:G:T	rs77941474	G	T	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	78884420	78884421	chr8:78884421:C:T	rs4739141	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	79096710	79096711	chr8:79096711:A:C	rs4144729	A	C	A	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	79670028	79670029	chr8:79670029:A:G	rs62518072	A	G	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr8	79935879	79935880	chr8:79935880:G:A	rs114327440	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	80110280	80110281	chr8:80110281:T:C	rs1426141	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	80320396	80320397	chr8:80320397:G:T	rs73261661	G	T	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr8	80534912	80534913	chr8:80534913:A:C	rs6988765	A	C	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr8	80668963	80668964	chr8:80668964:G:C	rs114065485	G	C	G	Sox1.mouse_HMG_4	1	1	+	8.229061651327337	1.3203068720121174	TGAACCATAATTCA
chr8	80694292	80694293	chr8:80694293:T:C	rs143104781	T	C	T	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	81041379	81041380	chr8:81041380:A:G	rs1039107726	A	G	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	81100994	81100995	chr8:81100995:C:T	rs56827627	C	T	C	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr8	81108464	81108465	chr8:81108465:A:G	rs4377918	A	G	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr8	81108908	81108909	chr8:81108909:G:A	rs149432944	G	A	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr8	81373147	81373148	chr8:81373148:A:G	rs10111968	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr8	81447564	81447565	chr8:81447565:G:A	rs550201739	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr8	81720458	81720459	chr8:81720459:C:T	rs7826125	C	T	C	Sox1.mouse_HMG_4	1	1	-	5.374466288809519	-1.5342884905057026	TGAACAAACATTTA
chr8	81720473	81720474	chr8:81720474:A:G	rs955744078	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	81820904	81820905	chr8:81820905:C:T	rs774462	C	T	C	Sox1.mouse_HMG_4	13	1	+	4.557718448617913	1.2730548832117092	TGAATAACCCTTCC
chr8	82418685	82418686	chr8:82418686:A:G	rs12675215	A	G	a	Sox1.mouse_HMG_4	7	1	+	5.374466288809518	4.42303930084769	TTAACAAACATTCA
chr8	84020897	84020898	chr8:84020898:T:A	rs2119766	T	A	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	84169383	84169384	chr8:84169384:T:G	rs7821259	T	G	.	Sox1.mouse_HMG_4	13	1	-	7.527439872186692	3.9293583216149264	AGAATTACCATTCA
chr8	84472678	84472679	chr8:84472679:A:C	rs13276680	A	C	C	Sox1.mouse_HMG_4	5	1	-	7.151965524394995	7.350073395266533	TGAGTTTACATTCA
chr8	85316047	85316048	chr8:85316048:C:G	rs35558766	C	G	C	Sox1.mouse_HMG_4	12	1	+	14.421302996982895	7.512548217667676	TGAATACTCATTCA
chr8	85395019	85395020	chr8:85395020:C:G	rs1390712	C	G	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	86034075	86034076	chr8:86034076:C:T	rs13281353	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	86034087	86034088	chr8:86034088:C:A	rs13281369	C	A	C	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	86452163	86452164	chr8:86452164:C:A	rs72688602	C	A	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr8	87061527	87061528	chr8:87061528:T:C	rs75495130	T	C	T	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	87611427	87611428	chr8:87611428:C:T	rs75317556	C	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr8	88557102	88557103	chr8:88557103:A:G	rs36053303	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr8	89230286	89230287	chr8:89230287:C:T	rs6983174	C	T	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	89753371	89753372	chr8:89753372:A:G	rs62533561	A	G	A	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr8	89869681	89869682	chr8:89869682:C:T	rs11782542	C	T	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr8	90346915	90346916	chr8:90346916:T:C	rs4286991	T	C	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr8	90540634	90540635	chr8:90540635:A:G	rs79668854	A	G	A	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr8	90579596	90579597	chr8:90579597:A:G	rs2105968	A	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr8	90666725	90666726	chr8:90666726:C:G	rs6994433	C	G	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr8	90983888	90983889	chr8:90983889:C:A	rs2054806	C	A	c	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	92064978	92064979	chr8:92064979:C:T	rs11991256	C	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	92285081	92285082	chr8:92285082:A:C	rs1992630	A	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr8	92318919	92318920	chr8:92318920:A:G	rs1480891	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr8	92483826	92483827	chr8:92483827:T:C	rs78993245	T	C	T	Sox1.mouse_HMG_4	5	1	-	4.899387619018604	4.457608396413265	AGAATAATTAGTCA
chr8	92818493	92818494	chr8:92818494:C:T	rs746840016	C	T	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr8	93151478	93151479	chr8:93151479:A:G	rs412719	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr8	93880109	93880110	chr8:93880110:A:G	rs4256561	A	G	G	Sox1.mouse_HMG_4	9	1	+	7.107272834793531	3.742451947290525	TAAATACATATTCA
chr8	93894025	93894026	chr8:93894026:A:G	rs4236816	A	G	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr8	93932878	93932879	chr8:93932879:A:C	rs1261571456	A	C	A	Sox1.mouse_HMG_4	6	1	+	4.146446237146506	3.29826726263026	TGAATTACCAGCCA
chr8	94011269	94011270	chr8:94011270:G:A	rs2978169	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr8	94058686	94058687	chr8:94058687:C:T	rs12550205	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr8	94833735	94833736	chr8:94833736:G:A	rs11783589	G	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr8	94907002	94907003	chr8:94907003:G:A	rs7820818	G	A	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr8	95411596	95411597	chr8:95411597:G:A	rs872527	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr8	95808428	95808429	chr8:95808429:C:G	rs79193651	C	G	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr8	96006446	96006447	chr8:96006447:G:A	rs7001358	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	96021608	96021609	chr8:96021609:C:T	rs1421224	C	T	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr8	96021612	96021613	chr8:96021613:A:T	rs62514601	A	T	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	96338579	96338580	chr8:96338580:C:A	rs7836195	C	A	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	96855389	96855390	chr8:96855390:T:C	chr8:96855390:T:C	T	C	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr8	97067996	97067997	chr8:97067997:A:C	rs2513399	A	C	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	97174513	97174514	chr8:97174514:G:T	chr8:97174514:G:T	G	T	G	Sox1.mouse_HMG_4	1	1	+	6.168461783482673	-0.7402929958325468	TGAATTTAAATGCC
chr8	97426181	97426182	chr8:97426182:G:A	rs2853307	G	A	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	97542326	97542327	chr8:97542327:T:C	rs1478951	T	C	T	Sox1.mouse_HMG_4	4	1	+	6.850332603875539	4.12831578504814	AGAATTGCAATTCA
chr8	97750392	97750393	chr8:97750393:T:G	rs2449517	T	G	G	Sox1.mouse_HMG_4	13	1	-	6.113973126452357	2.515891575880591	TAAATTCTAATTCA
chr8	97803581	97803582	chr8:97803582:A:G	rs4735494	A	G	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	97990522	97990523	chr8:97990523:T:C	rs9785061	T	C	T	Sox1.mouse_HMG_4	3	1	-	7.426444078010745	0.5390241682065458	TGAACACTAATGCA
chr8	98018848	98018849	chr8:98018849:G:A	rs72678737	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr8	98132697	98132698	chr8:98132698:T:C	rs10955149	T	C	C	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	98132699	98132700	chr8:98132700:G:A	rs2232	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr8	98305510	98305511	chr8:98305511:C:T	rs11785622	C	T	C	Sox1.mouse_HMG_4	1	1	+	8.442307921611212	8.442307921611212	TCAATAGTCATTCA
chr8	98383319	98383320	chr8:98383320:T:C	rs191684933	T	C	T	Sox1.mouse_HMG_4	0	1	+	3.381374850287484	-0.5201748968871163	TGAAAGCCCATGCA
chr8	99281578	99281579	chr8:99281579:T:C	rs4446702	T	C	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr8	99812597	99812598	chr8:99812598:A:G	rs77912140	A	G	A	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr8	100038473	100038474	chr8:100038474:C:T	rs1460932	C	T	C	Sox1.mouse_HMG_4	1	1	-	7.144118753233931	0.23536397391870945	TGACTGACTATGCA
chr8	100046714	100046715	chr8:100046715:A:G	rs2926768	A	G	G	Sox1.mouse_HMG_4	11	1	-	6.757639489200912	-0.12277542498665817	TGAATTCTTATTCT
chr8	100229683	100229684	chr8:100229684:A:G	rs76214311	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	100465719	100465720	chr8:100465720:T:G	rs2721974	T	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	100465751	100465752	chr8:100465752:C:G	rs527410199	C	G	C	Sox1.mouse_HMG_4	1	1	-	8.091959697407276	1.183204918092054	TGAACAGAAATGCA
chr8	100473841	100473842	chr8:100473842:A:T	rs1954701	A	T	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr8	100658386	100658387	chr8:100658387:C:T	rs1612817	C	T	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr8	100667796	100667797	chr8:100667797:G:A	chr8:100667797:G:A	G	A	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	100716200	100716201	chr8:100716201:C:T	rs76970511	C	T	C	Sox1.mouse_HMG_4	7	1	-	5.48695846385958	6.438385451821407	TGAACTCGAATTCC
chr8	100796195	100796196	chr8:100796196:A:T	rs10112080	A	T	A	Sox1.mouse_HMG_4	10	1	-	5.341346965271489	-1.5344221678527925	TCAACAGCTATTCA
chr8	101175925	101175926	chr8:101175926:G:A	rs935464	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	101336131	101336132	chr8:101336132:T:G	rs6468768	T	G	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	101369067	101369068	chr8:101369068:G:A	rs112132843	G	A	G	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr8	101388310	101388311	chr8:101388311:A:C	rs17393159	A	C	A	Sox1.mouse_HMG_4	0	1	-	7.484029084827778	3.8866907120561702	TGAATTGACAGTCC
chr8	101602341	101602342	chr8:101602342:T:C	rs4734546	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr8	101700665	101700666	chr8:101700666:T:C	rs6468788	T	C	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	101755769	101755770	chr8:101755770:G:T	rs114554488	G	T	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	101755838	101755839	chr8:101755839:T:G	rs2154652	T	G	G	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr8	101822294	101822295	chr8:101822295:T:C	rs1893366	T	C	C	Sox1.mouse_HMG_4	10	1	+	12.080468495068533	5.204699361944254	TGAACATTTATTCA
chr8	101975416	101975417	chr8:101975417:G:A	rs6999316	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	101975425	101975426	chr8:101975426:T:C	rs4734048	T	C	C	Sox1.mouse_HMG_4	9	1	-	4.685244604168919	1.3204237166659125	TGATTAGACATGCA
chr8	102392920	102392921	chr8:102392921:T:C	rs13267556	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr8	103143623	103143624	chr8:103143624:C:T	rs1391118	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr8	103229537	103229538	chr8:103229538:A:C	rs16870270	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr8	103647360	103647361	chr8:103647361:A:G	rs117900220	A	G	A	Sox1.mouse_HMG_4	0	1	-	7.710744854065739	3.8091951068911376	TGAACATCAATGCA
chr8	103874206	103874207	chr8:103874207:A:G	rs4446700	A	G	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr8	104672654	104672655	chr8:104672655:G:A	rs16871678	G	A	g	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr8	104673183	104673184	chr8:104673184:G:A	rs4734110	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr8	104891448	104891449	chr8:104891449:A:G	rs117237211	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr8	106100113	106100114	chr8:106100114:C:T	rs60410374	C	T	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	106199649	106199650	chr8:106199650:C:T	chr8:106199650:C:T	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	106288277	106288278	chr8:106288278:A:G	rs1429544263	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	106435571	106435572	chr8:106435572:T:G	rs1789974	T	G	T	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr8	106556982	106556983	chr8:106556983:T:C	rs1676423	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr8	106567452	106567453	chr8:106567453:C:T	rs7826885	C	T	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr8	106767657	106767658	chr8:106767658:G:A	rs16875066	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr8	106901167	106901168	chr8:106901168:C:T	rs4615542	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr8	107314122	107314123	chr8:107314123:A:G	rs4626569	A	G	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr8	107381570	107381571	chr8:107381571:T:A	rs2445358	T	A	T	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr8	107381571	107381572	chr8:107381572:C:T	rs2514864	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr8	107490337	107490338	chr8:107490338:C:T	rs144154656	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr8	108008554	108008555	chr8:108008555:A:G	rs13264757	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr8	108403042	108403043	chr8:108403043:G:C	rs78302522	G	C	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr8	108645762	108645763	chr8:108645763:A:T	rs1909024	A	T	A	Sox1.mouse_HMG_4	9	1	+	4.13894624168726	-2.7368228914370203	GAAATGGACATTCA
chr8	108685448	108685449	chr8:108685449:A:G	rs12675124	A	G	G	Sox1.mouse_HMG_4	4	1	-	4.980968348445894	2.2589515296184954	AGAATAGTTAGTCA
chr8	108718416	108718417	chr8:108718417:T:G	rs13256244	T	G	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr8	108718441	108718442	chr8:108718442:G:A	rs13254651	G	A	A	Sox1.mouse_HMG_4	5	1	+	6.69253501363028	7.134314236235618	TGAATGAAAATGCC
chr8	108718458	108718459	chr8:108718459:T:G	rs7007267	T	G	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr8	108911712	108911713	chr8:108911713:A:G	rs114593774	A	G	A	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr8	109064182	109064183	chr8:109064183:A:C	rs4735085	A	C	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr8	109129501	109129502	chr8:109129502:C:A	rs75999359	C	A	C	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	109129507	109129508	chr8:109129508:G:A	rs9297421	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.844969548839602	-2.0637852304756183	GGGATAGTCATTCA
chr8	109368811	109368812	chr8:109368812:T:C	rs1246605172	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr8	109539456	109539457	chr8:109539457:A:G	rs146835783	A	G	A	Sox1.mouse_HMG_4	0	1	+	4.77617483279874	8.043078626677522	AGAATAAACAGTCA
chr8	109539464	109539465	chr8:109539465:C:G	rs78316162	C	G	C	Sox1.mouse_HMG_4	8	1	+	4.77617483279874	-1.2858180729987778	AGAATAAACAGTCA
chr8	110048956	110048957	chr8:110048957:T:C	rs996249	T	C	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	110341792	110341793	chr8:110341793:C:A	rs17480167	C	A	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr8	110635957	110635958	chr8:110635958:A:T	rs11989354	A	T	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr8	110893727	110893728	chr8:110893728:G:A	rs113515640	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	111326809	111326810	chr8:111326810:T:C	rs10095525	T	C	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr8	111326850	111326851	chr8:111326851:A:T	rs62520615	A	T	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr8	111797060	111797061	chr8:111797061:T:C	rs7006187	T	C	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr8	112622612	112622613	chr8:112622613:C:T	rs13256001	C	T	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr8	113013765	113013766	chr8:113013766:A:G	rs1969112	A	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	113684902	113684903	chr8:113684903:G:A	rs1561943	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr8	115506355	115506356	chr8:115506356:G:A	rs3808425	G	A	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr8	115526839	115526840	chr8:115526840:G:A	rs12549788	G	A	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr8	116116520	116116521	chr8:116116521:G:A	rs10100863	G	A	G	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr8	116442717	116442718	chr8:116442718:C:G	rs561867556	C	G	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr8	118023901	118023902	chr8:118023902:C:T	rs2279121	C	T	C	Sox1.mouse_HMG_4	1	1	-	8.628035667391288	1.719280888076067	TGAACAAATATGCA
chr8	118056369	118056370	chr8:118056370:C:T	rs10955851	C	T	c	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	118056407	118056408	chr8:118056408:G:C	rs541249676	G	C	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	118503003	118503004	chr8:118503004:C:T	rs7012653	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.608660250592427	4.4676289522652874	TAAATAACCATGCA
chr8	119099171	119099172	chr8:119099172:T:C	rs17179583	T	C	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	119278056	119278057	chr8:119278057:G:A	rs1582674	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr8	119346242	119346243	chr8:119346243:T:G	rs2470005	T	G	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr8	119366237	119366238	chr8:119366238:A:G	rs3110337	A	G	G	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr8	119585894	119585895	chr8:119585895:G:C	rs73329822	G	C	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr8	119690476	119690477	chr8:119690477:A:G	rs35592623	A	G	A	Sox1.mouse_HMG_4	4	1	-	7.699216497696408	4.97719967886901	AGAATGAACATTCA
chr8	119759622	119759623	chr8:119759623:G:A	rs7011974	G	A	A	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr8	119897984	119897985	chr8:119897985:A:T	rs6469864	A	T	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr8	119897994	119897995	chr8:119897995:A:T	rs6469865	A	T	T	Sox1.mouse_HMG_4	9	1	+	5.233434990482378	-1.6423341426419038	TGTACAAATATTCA
chr8	120103371	120103372	chr8:120103372:A:T	rs7459865	A	T	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	121132755	121132756	chr8:121132756:C:T	rs1560771	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr8	121134486	121134487	chr8:121134487:C:T	rs1472743	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr8	121192085	121192086	chr8:121192086:A:G	rs60528795	A	G	G	Sox1.mouse_HMG_4	3	1	+	5.40079753417134	-1.4866223756328572	TCAACAACCATTCA
chr8	121238383	121238384	chr8:121238384:C:T	rs10104487	C	T	c	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr8	121285064	121285065	chr8:121285065:T:A	rs72713440	T	A	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr8	121449420	121449421	chr8:121449421:T:C	rs72716651	T	C	T	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr8	121502769	121502770	chr8:121502770:A:G	rs28779191	A	G	A	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr8	121574795	121574796	chr8:121574796:G:T	rs16895678	G	T	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr8	121770719	121770720	chr8:121770720:A:G	rs17243536	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr8	122267050	122267051	chr8:122267051:C:A	rs2023109	C	A	a	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr8	122588203	122588204	chr8:122588204:G:T	rs34868768	G	T	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr8	122780584	122780585	chr8:122780585:G:A	rs73331734	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	122857688	122857689	chr8:122857689:T:C	rs11778651	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr8	122940052	122940053	chr8:122940053:A:G	rs7015548	A	G	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	122984538	122984539	chr8:122984539:T:C	rs566315917	T	C	T	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	122988245	122988246	chr8:122988246:C:T	rs142406011	C	T	C	Sox1.mouse_HMG_4	8	1	+	4.554127082075576	4.413095783748435	TAAATGATCAGTCA
chr8	123058191	123058192	chr8:123058192:A:G	rs17313372	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr8	123558146	123558147	chr8:123558147:A:C	rs7827993	A	C	C	Sox1.mouse_HMG_4	2	1	+	5.6923333697002185	-1.2164214096150026	TGAATTAGAAGTCC
chr8	123737463	123737464	chr8:123737464:T:G	rs10956146	T	G	T	Sox1.mouse_HMG_4	8	1	-	5.849729041905353	6.608417039643795	TGTATTCAAATTCA
chr8	123914485	123914486	chr8:123914486:T:C	rs16899037	T	C	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	124076974	124076975	chr8:124076975:A:G	rs13254252	A	G	G	Sox1.mouse_HMG_4	13	1	+	6.7475674999047515	-0.13517761607321788	GGACTAGGCATTCA
chr8	124175494	124175495	chr8:124175495:C:T	rs4871467	C	T	N	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr8	124254455	124254456	chr8:124254456:C:T	rs73345113	C	T	T	Sox1.mouse_HMG_4	12	1	+	4.907642345656242	-2.001112433658978	GGAAAAGTCATTCA
chr8	124267166	124267167	chr8:124267167:A:G	rs66961607	A	G	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	124376614	124376615	chr8:124376615:T:C	rs72711199	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr8	124376654	124376655	chr8:124376655:A:G	rs72711201	A	G	A	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr8	124567495	124567496	chr8:124567496:G:A	rs3857943	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr8	124604474	124604475	chr8:124604475:A:G	rs73341856	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr8	124684270	124684271	chr8:124684271:G:A	rs72714759	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr8	124690519	124690520	chr8:124690520:T:C	rs3901290	T	C	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	125012071	125012072	chr8:125012072:C:G	rs16900177	C	G	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr8	125371852	125371853	chr8:125371853:T:G	rs10094181	T	G	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	125384791	125384792	chr8:125384792:A:G	rs80282080	A	G	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr8	125477005	125477006	chr8:125477006:G:A	rs61002144	G	A	G	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr8	125504745	125504746	chr8:125504746:T:C	rs4512391	T	C	C	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr8	125543942	125543943	chr8:125543943:G:A	rs969674	G	A	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr8	125567328	125567329	chr8:125567329:C:T	rs1020649	C	T	T	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	125636239	125636240	chr8:125636240:A:G	rs60074719	A	G	G	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr8	125769513	125769514	chr8:125769514:T:C	rs16900842	T	C	t	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr8	125769562	125769563	chr8:125769563:C:T	rs17425525	C	T	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	125803798	125803799	chr8:125803799:G:A	rs13259241	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	125888385	125888386	chr8:125888386:A:C	rs62522818	A	C	A	Sox1.mouse_HMG_4	2	1	+	7.629486450033707	0.7207316707184883	TGAATATATATTAA
chr8	126121478	126121479	chr8:126121479:A:G	rs6981860	A	G	A	Sox1.mouse_HMG_4	9	1	+	10.910977222271239	7.546156334768233	TGAACTACAATTCA
chr8	126604230	126604231	chr8:126604231:A:T	rs117270882	A	T	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr8	126656680	126656681	chr8:126656681:C:T	rs13250691	C	T	C	Sox1.mouse_HMG_4	6	1	+	4.552618559655094	5.074832174895271	TCAACACCCATTCA
chr8	127294102	127294103	chr8:127294103:C:T	rs116903966	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr8	127294784	127294785	chr8:127294785:A:G	rs73705770	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr8	127623509	127623510	chr8:127623510:T:C	rs10101587	T	C	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr8	127630985	127630986	chr8:127630986:A:G	rs6989963	A	G	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	127759810	127759811	chr8:127759811:A:T	rs79812830	A	T	A	Sox1.mouse_HMG_4	5	1	-	5.080404009306935	5.720291102783812	TAAACTGTCATTCA
chr8	127799812	127799813	chr8:127799813:A:G	rs145738477	A	G	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	127900638	127900639	chr8:127900639:G:A	rs6983620	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr8	127905566	127905567	chr8:127905567:T:A	rs113443988	T	A	T	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr8	128000436	128000437	chr8:128000437:G:T	rs544451897	G	T	G	Sox1.mouse_HMG_4	5	1	+	8.030308488411775	7.832200617540237	TGAATGGTCAGGCA
chr8	128059290	128059291	chr8:128059291:A:G	rs2648873	A	G	G	Sox1.mouse_HMG_4	13	1	+	3.7342879726869818	-3.1484571432909876	TGAATGCTCAGCCA
chr8	128069988	128069989	chr8:128069989:C:T	rs2250892	C	T	C	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	128158835	128158836	chr8:128158836:T:G	rs13255672	T	G	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr8	128529228	128529229	chr8:128529229:T:C	rs7814937	T	C	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	128743213	128743214	chr8:128743214:G:T	rs6470654	G	T	T	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr8	128854689	128854690	chr8:128854690:T:C	rs145163082	T	C	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr8	128972122	128972123	chr8:128972123:T:C	rs140157906	T	C	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr8	129561258	129561259	chr8:129561259:C:T	rs776366597	C	T	c	Sox1.mouse_HMG_4	1	1	-	7.147754814765889	0.23900003545066695	CGAATGAACATGCA
chr8	129692488	129692489	chr8:129692489:G:C	rs4733722	G	C	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	130053151	130053152	chr8:130053152:T:C	rs148698077	T	C	T	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr8	130203057	130203058	chr8:130203058:A:G	rs148046010	A	G	A	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	130244184	130244185	chr8:130244185:C:G	rs16904227	C	G	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr8	130407631	130407632	chr8:130407632:T:C	rs13249894	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr8	130443804	130443805	chr8:130443805:G:T	rs186118715	G	T	G	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	130579157	130579158	chr8:130579158:C:T	rs12541337	C	T	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr8	130650579	130650580	chr8:130650580:C:A	rs62517841	C	A	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr8	130801140	130801141	chr8:130801141:G:T	rs73715591	G	T	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	132143361	132143362	chr8:132143362:G:A	rs77103854	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr8	132143362	132143363	chr8:132143363:C:T	rs59116109	C	T	C	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr8	132194154	132194155	chr8:132194155:G:A	rs73356941	G	A	G	Sox1.mouse_HMG_4	6	1	+	5.53700285353742	5.45542212411013	TGAATAGCGATGCA
chr8	132584641	132584642	chr8:132584642:A:G	rs3779970	A	G	G	Sox1.mouse_HMG_4	11	1	-	4.171931887878198	-2.708483026309371	GGAATGGACACTCA
chr8	132907799	132907800	chr8:132907800:T:G	rs116981332	T	G	T	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr8	132912242	132912243	chr8:132912243:G:A	rs2687828	G	A	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr8	133034060	133034061	chr8:133034061:G:T	rs6982276	G	T	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr8	133034100	133034101	chr8:133034101:T:G	rs7002366	T	G	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	133063165	133063166	chr8:133063166:T:C	rs4736621	T	C	T	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr8	133066972	133066973	chr8:133066973:C:G	rs28579253	C	G	C	Sox1.mouse_HMG_4	4	1	+	5.75837280876588	1.6343076450946976	TGAACAGTTGGTCA
chr8	133071556	133071557	chr8:133071557:C:G	rs2739149	C	G	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr8	133071593	133071594	chr8:133071594:C:A	rs12545138	C	A	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr8	133207819	133207820	chr8:133207820:G:A	rs2977537	G	A	A	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr8	133248104	133248105	chr8:133248105:T:C	rs2233337	T	C	T	Sox1.mouse_HMG_4	11	1	+	4.651822165869971	-2.228592748317598	TTACTAGTCATTCA
chr8	133294130	133294131	chr8:133294131:C:T	rs4736443	C	T	T	Sox1.mouse_HMG_4	10	1	-	3.924488758416012	0.4135405127947378	TGAAAAGGCAGTCA
chr8	133397591	133397592	chr8:133397592:G:A	rs76514029	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	133454670	133454671	chr8:133454671:T:G	rs16904922	T	G	G	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr8	133584117	133584118	chr8:133584118:A:C	rs142116661	A	C	A	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr8	133671548	133671549	chr8:133671549:C:T	rs752568	C	T	t	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr8	133864121	133864122	chr8:133864122:C:G	rs4897695	C	G	C	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr8	134042525	134042526	chr8:134042526:G:A	rs116979113	G	A	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr8	134042545	134042546	chr8:134042546:T:C	rs7832577	T	C	C	Sox1.mouse_HMG_4	13	1	-	7.717376681848218	0.8346315658702483	TGAAAGAACATTCA
chr8	134116546	134116547	chr8:134116547:A:T	rs17677384	A	T	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr8	134317474	134317475	chr8:134317475:T:C	rs4639560	T	C	T	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr8	134334340	134334341	chr8:134334341:G:A	rs75582253	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr8	134582471	134582472	chr8:134582472:A:G	rs7012925	A	G	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr8	134665183	134665184	chr8:134665184:T:C	rs9785154	T	C	C	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	134778507	134778508	chr8:134778508:C:T	rs80249340	C	T	c	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr8	134891837	134891838	chr8:134891838:C:G	rs11166841	C	G	G	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr8	135269187	135269188	chr8:135269188:C:T	rs10107696	C	T	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr8	136519829	136519830	chr8:136519830:C:T	rs7825470	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr8	137148641	137148642	chr8:137148642:C:G	rs11777630	C	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	137907081	137907082	chr8:137907082:T:C	rs1511829	T	C	C	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr8	138007974	138007975	chr8:138007975:G:A	rs149550831	G	A	G	Sox1.mouse_HMG_4	7	1	-	7.313638849499632	7.551551688684815	GGAACTACAATTCA
chr8	138122840	138122841	chr8:138122841:C:T	rs1056999302	C	T	C	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr8	138122874	138122875	chr8:138122875:G:A	rs28653779	G	A	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr8	138843875	138843876	chr8:138843876:G:A	rs148918375	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr8	139024906	139024907	chr8:139024907:T:C	rs11987750	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	139215408	139215409	chr8:139215409:T:C	rs7813462	T	C	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr8	139247249	139247250	chr8:139247250:G:C	rs11776208	G	C	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr8	139376749	139376750	chr8:139376750:C:G	rs6578027	C	G	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr8	139485872	139485873	chr8:139485873:A:G	rs78120237	A	G	A	Sox1.mouse_HMG_4	7	1	-	4.131964598022211	3.89405175883703	CGAATGGTCACTCA
chr8	139775342	139775343	chr8:139775343:C:T	rs529024995	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr8	140091374	140091375	chr8:140091375:T:C	rs117055258	T	C	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr8	140161737	140161738	chr8:140161738:T:C	rs7015741	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	140331658	140331659	chr8:140331659:C:T	rs6988605	C	T	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr8	140456919	140456920	chr8:140456920:T:C	rs2948173	T	C	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr8	140492339	140492340	chr8:140492340:A:G	rs75273601	A	G	A	Sox1.mouse_HMG_4	9	1	+	5.456047018236808	2.0912261307338014	TGGACAGACATTCA
chr8	140944326	140944327	chr8:140944327:C:A	rs55967138	C	A	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr8	141205132	141205133	chr8:141205133:A:T	rs7837832	A	T	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr8	141517039	141517040	chr8:141517040:A:C	rs13279711	A	C	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr8	141517051	141517052	chr8:141517052:G:C	rs7463817	G	C	C	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr8	141554863	141554864	chr8:141554864:A:G	rs4907402	A	G	-	Sox1.mouse_HMG_4	6	1	-	4.1300595877625605	3.6078459725223837	TGAACATGCCTTCA
chr8	141587503	141587504	chr8:141587504:C:T	rs151330877	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr8	141587538	141587539	chr8:141587539:C:G	rs636197	C	G	c	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr8	141931202	141931203	chr8:141931203:T:C	rs74565016	T	C	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr8	141960988	141960989	chr8:141960989:G:A	rs79137459	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	142046221	142046222	chr8:142046222:G:T	rs189881154	G	T	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr8	142057347	142057348	chr8:142057348:C:T	rs10096860	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr8	142112991	142112992	chr8:142112992:C:A	rs10109668	C	A	C	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr8	142171966	142171967	chr8:142171967:G:A	rs774798421	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	142182859	142182860	chr8:142182860:A:G	rs13270212	A	G	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr8	142245867	142245868	chr8:142245868:A:G	chr8:142245868:A:G	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr8	142245909	142245910	chr8:142245910:G:A	rs4976985	G	A	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr8	142286442	142286443	chr8:142286443:C:T	rs67317093	C	T	C	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr8	142462946	142462947	chr8:142462947:C:T	rs55887230	C	T	c	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr8	142663459	142663460	chr8:142663460:C:G	rs750529	C	G	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr8	142929351	142929352	chr8:142929352:G:A	rs36142026	G	A	g	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	143514551	143514552	chr8:143514552:G:A	rs28569868	G	A	G	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr8	143989816	143989817	chr8:143989817:G:A	rs73377273	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr8	144078531	144078532	chr8:144078532:G:A	chr8:144078532:G:A	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr8	144600036	144600037	chr8:144600037:G:A	rs144942574	G	A	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr8	144777203	144777204	chr8:144777204:G:A	rs2955203	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr9	477235	477236	chr9:477236:C:A	rs62531956	C	A	C	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr9	490070	490071	chr9:490071:C:A	rs10758655	C	A	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr9	628425	628426	chr9:628426:A:C	rs10975478	A	C	C	Sox1.mouse_HMG_4	6	1	-	7.040169615750057	7.447715704453416	TGAATATAAATACA
chr9	664010	664011	chr9:664011:C:T	rs2885161	C	T	C	Sox1.mouse_HMG_4	0	1	-	7.313638849499632	4.04673505562085	GGAACTACAATTCA
chr9	695292	695293	chr9:695293:A:G	rs2018255	A	G	A	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr9	706184	706185	chr9:706185:G:C	rs7855995	G	C	G	Sox1.mouse_HMG_4	1	1	+	6.670091603023867	-0.23866317629135292	TGAATTACAAGTCC
chr9	718013	718014	chr9:718014:T:C	rs17433274	T	C	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr9	847835	847836	chr9:847836:A:G	rs4500131	A	G	A	Sox1.mouse_HMG_4	3	1	+	6.371942657145529	-0.5154772526586682	TAAATTTAAATTCA
chr9	935879	935880	chr9:935880:C:T	rs138223389	C	T	C	Sox1.mouse_HMG_4	6	1	-	7.486149487438651	7.4045687580113615	TGAAGTGCTATTCA
chr9	1620412	1620413	chr9:1620413:G:C	rs10120355	G	C	G	Sox1.mouse_HMG_4	1	1	+	6.229282236715896	-0.6794725425993233	GGAATACCAATTCC
chr9	1620432	1620433	chr9:1620433:T:C	rs697050	T	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr9	2015780	2015781	chr9:2015781:T:G	rs571035826	T	G	T	Sox1.mouse_HMG_4	11	1	+	3.4413716085050563	-0.07278249390125402	TGAGTGGGCAGTCA
chr9	2126237	2126238	chr9:2126238:G:A	rs6475506	G	A	A	Sox1.mouse_HMG_4	1	1	+	4.1130266833594815	-2.7957280959557407	TGAAATGCCATGCA
chr9	2160200	2160201	chr9:2160201:T:G	chr9:2160201:T:G	T	G	T	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr9	2245451	2245452	chr9:2245452:G:A	rs1886266	G	A	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	2270172	2270173	chr9:2270173:A:G	rs17471115	A	G	A	Sox1.mouse_HMG_4	6	1	+	10.99663987135439	11.078220600781677	TGAATAATAATGCA
chr9	2295571	2295572	chr9:2295572:T:C	rs16938276	T	C	T	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr9	2425006	2425007	chr9:2425007:A:G	rs138045311	A	G	A	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr9	2661982	2661983	chr9:2661983:C:G	rs7045363	C	G	C	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr9	2692965	2692966	chr9:2692966:G:C	rs1987496	G	C	G	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr9	3049801	3049802	chr9:3049802:A:T	rs12000815	A	T	A	Sox1.mouse_HMG_4	2	1	+	4.19515691802823	-2.7135978612869867	AGAACTCTCATTCA
chr9	3058484	3058485	chr9:3058485:A:G	rs11791572	A	G	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr9	3111043	3111044	chr9:3111044:C:T	rs140081680	C	T	c	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr9	3232973	3232974	chr9:3232974:A:G	rs143496216	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr9	3237343	3237344	chr9:3237344:T:G	rs144317653	T	G	T	Sox1.mouse_HMG_4	10	1	+	7.655036627604935	4.290215740101928	TGACTCAACATTCA
chr9	3401989	3401990	chr9:3401990:T:C	rs12347811	T	C	T	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr9	3858032	3858033	chr9:3858033:G:T	rs191904795	G	T	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr9	3865096	3865097	chr9:3865097:G:T	rs10739002	G	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr9	3930250	3930251	chr9:3930251:T:A	rs486163	T	A	T	Sox1.mouse_HMG_4	5	1	+	5.938733084083814	6.5786201775606905	TGAAATCCAATTCA
chr9	4056479	4056480	chr9:4056480:T:C	rs10974304	T	C	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr9	4093294	4093295	chr9:4093295:G:A	rs484781	G	A	G	Sox1.mouse_HMG_4	4	1	-	8.624161420624066	11.346178239451465	GGAACATTCATTCA
chr9	4301600	4301601	chr9:4301601:G:A	rs10758596	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	4426593	4426594	chr9:4426594:C:G	rs74469019	C	G	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr9	4426630	4426631	chr9:4426631:C:A	rs10974531	C	A	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr9	4549037	4549038	chr9:4549038:T:C	chr9:4549038:T:C	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr9	4689817	4689818	chr9:4689818:T:A	rs10974732	T	A	T	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr9	5288706	5288707	chr9:5288707:T:A	rs2224572	T	A	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr9	5387368	5387369	chr9:5387369:C:T	rs7040270	C	T	t	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	5439774	5439775	chr9:5439775:C:T	rs3824439	C	T	C	Sox1.mouse_HMG_4	1	1	-	13.688243525164108	6.779488745848887	TGAATTGAAATTCA
chr9	5493905	5493906	chr9:5493906:C:T	rs12347614	C	T	c	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr9	5493932	5493933	chr9:5493933:C:A	rs74980936	C	A	c	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr9	5493936	5493937	chr9:5493937:A:T	rs11794898	A	T	a	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	5617757	5617758	chr9:5617758:C:G	rs4288429	C	G	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr9	6124583	6124584	chr9:6124584:T:G	rs1537285	T	G	T	Sox1.mouse_HMG_4	10	1	+	6.806524910515333	3.441704023012326	TTAATGCACATTCA
chr9	6781754	6781755	chr9:6781755:G:T	rs12351262	G	T	T	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr9	7101165	7101166	chr9:7101166:G:C	rs4740871	G	C	C	Sox1.mouse_HMG_4	12	1	-	3.7384924100333183	-3.170262369281901	TGAATAGGCATGCT
chr9	7240780	7240781	chr9:7240781:C:T	rs2770707	C	T	-	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr9	7240832	7240833	chr9:7240833:G:A	rs147258246	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr9	7265256	7265257	chr9:7265257:T:G	rs1041285	T	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr9	7265261	7265262	chr9:7265262:A:C	rs10976163	A	C	A	Sox1.mouse_HMG_4	2	1	+	6.759969690991311	-0.14878508832391035	TGAATTCTTATACA
chr9	7274069	7274070	chr9:7274070:T:C	rs2820942	T	C	C	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr9	7326777	7326778	chr9:7326778:G:C	chr9:7326778:G:C	G	C	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr9	7452631	7452632	chr9:7452632:C:T	rs2986258	C	T	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr9	7608322	7608323	chr9:7608323:T:C	rs56405389	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.563098849392775	1.198277961889768	TTAATCACCATTCA
chr9	7968383	7968384	chr9:7968384:G:A	rs7026049	G	A	A	Sox1.mouse_HMG_4	10	1	+	7.222845834705099	3.711897589083825	TGAATTGTAGGTCA
chr9	8053132	8053133	chr9:8053133:T:C	rs150156175	T	C	T	Sox1.mouse_HMG_4	3	1	-	4.818871263967929	-2.0685486458362696	TGAACACTCATACA
chr9	8158761	8158762	chr9:8158762:T:C	rs7022278	T	C	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	8871281	8871282	chr9:8871282:A:C	rs191020163	A	C	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr9	8917916	8917917	chr9:8917917:T:G	rs12552175	T	G	T	Sox1.mouse_HMG_4	0	1	-	3.3152161367555593	6.277908556231351	AGAATGGGCATGCA
chr9	9341451	9341452	chr9:9341452:C:A	rs149489677	C	A	C	Sox1.mouse_HMG_4	6	1	-	11.078220600781677	10.67067451207832	TGAATAGTAATGCA
chr9	9711903	9711904	chr9:9711904:A:G	rs4391483	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr9	9760041	9760042	chr9:9760042:T:C	rs2821516	T	C	C	Sox1.mouse_HMG_4	0	1	+	4.3875780813229674	0.48602833414836444	TCACTAGACATTCA
chr9	9857418	9857419	chr9:9857419:T:A	rs10978037	T	A	T	Sox1.mouse_HMG_4	10	1	+	7.985231598715679	1.1094624655913978	TGAATAAATGTGCA
chr9	9970746	9970747	chr9:9970747:G:A	rs7870939	G	A	A	Sox1.mouse_HMG_4	1	1	+	6.055949418164501	-0.8528053611507198	TGAATGGGAAGGCA
chr9	9970776	9970777	chr9:9970777:G:C	rs7870952	G	C	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr9	10060312	10060313	chr9:10060313:G:C	rs116913280	G	C	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr9	10060350	10060351	chr9:10060351:A:G	rs1704030	A	G	A	Sox1.mouse_HMG_4	-8	0	-	0	0	.
chr9	10080376	10080377	chr9:10080377:G:T	rs1284775964	G	T	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr9	10146520	10146521	chr9:10146521:G:T	rs16931176	G	T	T	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr9	10238390	10238391	chr9:10238391:C:A	rs12353282	C	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr9	10477684	10477685	chr9:10477685:G:A	rs28795164	G	A	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	10853721	10853722	chr9:10853722:C:T	rs10809223	C	T	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr9	10986280	10986281	chr9:10986281:C:T	rs7854899	C	T	C	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr9	11077694	11077695	chr9:11077695:T:C	rs10738208	T	C	T	Sox1.mouse_HMG_4	10	1	+	10.118839938692327	3.2430708055680473	TGAATTACAATGCA
chr9	11431639	11431640	chr9:11431640:A:G	rs4350069	A	G	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr9	11703542	11703543	chr9:11703543:G:A	rs10960109	G	A	A	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr9	11704646	11704647	chr9:11704647:G:C	rs10960112	G	C	G	Sox1.mouse_HMG_4	3	1	+	4.782245310205486	7.879179464268444	TGAGCTACCATTCA
chr9	12240495	12240496	chr9:12240496:A:G	rs2104769	A	G	A	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	12464875	12464876	chr9:12464876:A:G	rs2150696	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.844226371039446	1.4794054835364392	TTAATAGTCATTCC
chr9	12687910	12687911	chr9:12687911:A:G	rs12344724	A	G	A	Sox1.mouse_HMG_4	13	1	+	10.03842700507881	3.1556818891008422	TGAATGGGTATGCA
chr9	12697975	12697976	chr9:12697976:A:G	rs143631989	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr9	12721061	12721062	chr9:12721062:A:C	rs1409629	A	C	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr9	12793575	12793576	chr9:12793576:G:A	rs147421879	G	A	G	Sox1.mouse_HMG_4	0	1	+	7.696672422509744	4.4297686286309625	GGAACACATATTCA
chr9	13144078	13144079	chr9:13144079:G:T	rs1854908	G	T	T	Sox1.mouse_HMG_4	8	1	-	4.432028106219663	3.673340108481221	TTAATATCCAGTCA
chr9	13147100	13147101	chr9:13147101:G:C	rs138895747	G	C	G	Sox1.mouse_HMG_4	5	1	+	12.105685930066404	8.98774964906578	TGAACGATCATTCA
chr9	13263764	13263765	chr9:13263765:T:C	rs1980994	T	C	T	Sox1.mouse_HMG_4	6	1	+	8.592434821345662	8.070221206105485	TGAACATACGTTCA
chr9	13280297	13280298	chr9:13280298:A:G	rs10809927	A	G	A	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr9	13352297	13352298	chr9:13352298:G:A	rs1147779	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.8726611241908	7.394874739430976	TGAATTCTCATTAA
chr9	13433043	13433044	chr9:13433044:T:A	rs141909716	T	A	T	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr9	13466329	13466330	chr9:13466330:T:G	rs12238169	T	G	T	Sox1.mouse_HMG_4	0	1	+	8.363949420100711	4.766611047329102	TGAAGAGTTATTCA
chr9	13726331	13726332	chr9:13726332:C:G	rs10810009	C	G	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr9	13845654	13845655	chr9:13845655:A:C	rs9407553	A	C	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr9	13899539	13899540	chr9:13899540:A:C	rs7874947	A	C	A	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr9	14012182	14012183	chr9:14012183:T:C	rs7848012	T	C	T	Sox1.mouse_HMG_4	7	1	+	4.9988232798796455	4.760910440694463	TCAACTATCATTCA
chr9	14057907	14057908	chr9:14057908:T:A	rs12352346	T	A	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr9	14063294	14063295	chr9:14063295:T:C	rs716831	T	C	C	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr9	14089528	14089529	chr9:14089529:A:G	rs10961378	A	G	A	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr9	14131561	14131562	chr9:14131562:T:G	rs7024670	T	G	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr9	14251541	14251542	chr9:14251542:T:C	rs559020439	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr9	14419054	14419055	chr9:14419055:T:C	rs10756549	T	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr9	14731672	14731673	chr9:14731673:T:C	rs4741423	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr9	14846595	14846596	chr9:14846596:G:A	rs1027347	G	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr9	15188107	15188108	chr9:15188108:T:C	rs1407977	T	C	C	Sox1.mouse_HMG_4	10	1	+	7.452072603930398	0.5763034708061168	TGAACTGAAATGCA
chr9	15373129	15373130	chr9:15373130:T:C	rs2798732	T	C	T	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr9	15373161	15373162	chr9:15373162:G:T	rs144746396	G	T	G	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr9	15826731	15826732	chr9:15826732:T:C	rs7032457	T	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr9	16125702	16125703	chr9:16125703:C:T	rs73419899	C	T	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr9	16368317	16368318	chr9:16368318:C:A	rs28569276	C	A	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr9	16368322	16368323	chr9:16368323:C:A	rs28582488	C	A	C	Sox1.mouse_HMG_4	3	1	+	4.89539693961189	8.68588269535313	GGACCAAACATTCA
chr9	16628829	16628830	chr9:16628830:T:C	rs17739929	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr9	16657541	16657542	chr9:16657542:G:C	rs10962522	G	C	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	16753931	16753932	chr9:16753932:G:C	rs6475077	G	C	C	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr9	17017987	17017988	chr9:17017988:C:T	rs142465952	C	T	C	Sox1.mouse_HMG_4	6	1	-	8.690386240980747	8.608805511553456	TGAACCGCTATTCA
chr9	17017994	17017995	chr9:17017995:G:C	rs78245906	G	C	G	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr9	17319957	17319958	chr9:17319958:C:A	rs9298772	C	A	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr9	17346405	17346406	chr9:17346406:A:G	rs10119370	A	G	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr9	17387676	17387677	chr9:17387677:C:T	rs1442518	C	T	t	Sox1.mouse_HMG_4	4	1	-	4.467466663988912	4.467466663988912	TGAAGGATCATGCA
chr9	17862173	17862174	chr9:17862174:G:A	rs10810857	G	A	G	Sox1.mouse_HMG_4	12	1	-	7.044823259457814	0.13606848014259487	TGAATACACATGCC
chr9	17862191	17862192	chr9:17862192:G:C	rs10733339	G	C	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr9	17900130	17900131	chr9:17900131:A:G	rs10963321	A	G	A	Sox1.mouse_HMG_4	6	1	-	5.197723379090565	4.675509763850389	TGAACATTTATTCT
chr9	18075848	18075849	chr9:18075849:G:T	rs1329919	G	T	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr9	18429279	18429280	chr9:18429280:C:T	rs7848193	C	T	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr9	18480555	18480556	chr9:18480556:C:T	rs74784461	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr9	18575899	18575900	chr9:18575900:A:G	rs10732338	A	G	G	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr9	18862036	18862037	chr9:18862037:T:G	rs115873520	T	G	T	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr9	19995896	19995897	chr9:19995897:T:C	rs9406769	T	C	c	Sox1.mouse_HMG_4	6	1	+	4.125413806699274	3.603200191459096	TGAACATGCATACA
chr9	20209594	20209595	chr9:20209595:C:T	rs117784697	C	T	C	Sox1.mouse_HMG_4	5	1	+	10.62367465419175	13.543503064320834	TGAATCCCCATTCA
chr9	20289743	20289744	chr9:20289744:A:G	rs10122531	A	G	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr9	20488911	20488912	chr9:20488912:A:G	rs10121168	A	G	A	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr9	20805270	20805271	chr9:20805271:T:G	rs10811408	T	G	T	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr9	21294808	21294809	chr9:21294809:G:C	rs777213204	G	C	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr9	21295318	21295319	chr9:21295319:G:A	rs10120117	G	A	g	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr9	21642590	21642591	chr9:21642591:A:G	rs10757229	A	G	-	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr9	21746796	21746797	chr9:21746797:A:G	rs7852900	A	G	A	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr9	22131825	22131826	chr9:22131826:A:G	rs2891169	A	G	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr9	23308288	23308289	chr9:23308289:C:T	rs10811884	C	T	T	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr9	24146393	24146394	chr9:24146394:T:C	rs2298619	T	C	C	Sox1.mouse_HMG_4	0	1	+	10.674564546696184	6.773014799521587	TGAATTTACAGTCA
chr9	24250302	24250303	chr9:24250303:A:G	rs55945482	A	G	G	Sox1.mouse_HMG_4	11	1	-	9.424646355195813	2.544231441008243	TGAATTCTAATTCC
chr9	25393679	25393680	chr9:25393680:C:G	rs10757524	C	G	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr9	25551628	25551629	chr9:25551629:A:G	rs7028018	A	G	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr9	25840671	25840672	chr9:25840672:C:T	rs7857646	C	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr9	25914150	25914151	chr9:25914151:G:A	rs191410484	G	A	G	Sox1.mouse_HMG_4	1	1	+	4.6528647885582615	-2.255889990756957	TGAACTACTCTTCA
chr9	26263779	26263780	chr9:26263780:T:A	rs2785110	T	A	T	Sox1.mouse_HMG_4	10	1	+	7.527439872186692	0.6516707390624108	AGAATTACCATTCA
chr9	26325424	26325425	chr9:26325425:C:A	rs13298813	C	A	C	Sox1.mouse_HMG_4	12	1	+	4.844969548839603	-2.0637852304756175	GAAATAGTCATTCA
chr9	27370096	27370097	chr9:27370097:C:A	rs72721191	C	A	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr9	27424609	27424610	chr9:27424610:T:C	rs188830705	T	C	T	Sox1.mouse_HMG_4	0	1	+	7.26599635373865	3.3644466065640506	TGACTACTCAGTCA
chr9	27499707	27499708	chr9:27499708:C:T	rs372141420	C	T	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr9	27537801	27537802	chr9:27537802:G:A	rs12337979	G	A	G	Sox1.mouse_HMG_4	5	1	+	4.138203063887103	4.579982286492441	TCAATGGACATTCC
chr9	27787890	27787891	chr9:27787891:G:T	rs72714653	G	T	g	Sox1.mouse_HMG_4	10	1	-	7.753825744897984	7.753825744897984	TGAATTATCACTCA
chr9	28563776	28563777	chr9:28563777:A:T	rs72713592	A	T	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr9	28801117	28801118	chr9:28801118:T:A	rs62548263	T	A	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr9	28801139	28801140	chr9:28801140:G:T	rs16913686	G	T	G	Sox1.mouse_HMG_4	5	1	+	4.166881027987089	3.9687731571155513	TTAATGACCATGCA
chr9	28974909	28974910	chr9:28974910:A:G	rs10812904	A	G	G	Sox1.mouse_HMG_4	0	1	-	6.5419570440813	2.6404072969067	TGAATACCAATTCT
chr9	29655939	29655940	chr9:29655940:T:G	rs7357693	T	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	31715093	31715094	chr9:31715094:G:A	rs11789270	G	A	A	Sox1.mouse_HMG_4	6	1	+	4.903927287516271	4.822346558088981	TGAGTCGTCATTCA
chr9	31835646	31835647	chr9:31835647:A:G	rs1928224	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	32073167	32073168	chr9:32073168:G:T	rs117157160	G	T	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	32172341	32172342	chr9:32172342:A:G	rs12555405	A	G	A	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr9	32866287	32866288	chr9:32866288:G:A	rs10758164	G	A	A	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr9	32894766	32894767	chr9:32894767:G:A	rs7040182	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr9	33104541	33104542	chr9:33104542:C:T	rs1013217	C	T	T	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr9	33576580	33576581	chr9:33576581:T:C	rs1853722	T	C	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	33582893	33582894	chr9:33582894:A:G	rs506352	A	G	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	33629239	33629240	chr9:33629240:T:C	rs10814016	T	C	.	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr9	34426125	34426126	chr9:34426126:G:C	rs6476445	G	C	G	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr9	34513668	34513669	chr9:34513669:T:G	rs139587549	T	G	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr9	35727004	35727005	chr9:35727005:T:C	rs114563371	T	C	T	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr9	35903302	35903303	chr9:35903303:G:A	rs4271052	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr9	35949204	35949205	chr9:35949205:T:G	rs13283021	T	G	T	Sox1.mouse_HMG_4	10	1	+	4.116788818574249	0.7519679310712426	TGAACTGCATTTCA
chr9	36031185	36031186	chr9:36031186:A:T	rs7039141	A	T	a	Sox1.mouse_HMG_4	13	1	+	13.78141590350602	6.898670787528051	TGAATTCTCATTCA
chr9	36031186	36031187	chr9:36031187:C:T	rs7039239	C	T	t	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr9	36140117	36140118	chr9:36140118:T:C	rs11791833	T	C	T	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	36268219	36268220	chr9:36268220:C:T	rs183020618	C	T	C	Sox1.mouse_HMG_4	8	1	+	3.7504607202241607	3.609429421897021	AGAATGCTCAGTCA
chr9	36407327	36407328	chr9:36407328:T:C	rs1889279	T	C	C	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr9	36462265	36462266	chr9:36462266:T:C	rs10972918	T	C	T	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr9	36539044	36539045	chr9:36539045:T:C	rs7849847	T	C	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr9	36573230	36573231	chr9:36573231:A:C	rs73645803	A	C	A	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr9	36928578	36928579	chr9:36928579:T:C	rs4878667	T	C	T	Sox1.mouse_HMG_4	2	1	-	8.846718350738639	1.9379635714234194	TGAACCATTATTCA
chr9	36975931	36975932	chr9:36975932:G:A	rs4878671	G	A	G	Sox1.mouse_HMG_4	12	1	-	5.374466288809518	-1.5342884905057026	TCAACAAACATTCA
chr9	37157966	37157967	chr9:37157967:T:G	rs13295115	T	G	T	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr9	38017332	38017333	chr9:38017333:G:A	rs116986264	G	A	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr9	38018692	38018693	chr9:38018693:T:C	rs10814643	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	38088431	38088432	chr9:38088432:C:G	rs7019432	C	G	C	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr9	38121340	38121341	chr9:38121341:C:G	rs10758472	C	G	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr9	38431453	38431454	chr9:38431454:A:T	rs72707482	A	T	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr9	38561295	38561296	chr9:38561296:G:A	rs10973906	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr9	38644531	38644532	chr9:38644532:G:A	rs12555827	G	A	g	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr9	38678453	38678454	chr9:38678454:A:G	rs12685777	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.24949659231053	0.8846757048075238	TGAGTGTTCAGTCA
chr9	39037449	39037450	chr9:39037450:T:C	rs200859321	T	C	-	Sox1.mouse_HMG_4	5	1	-	4.469665928527027	4.027886705921688	TGAATATTCTTTCC
chr9	39047010	39047011	chr9:39047011:T:C	rs574935326	T	C	T	Sox1.mouse_HMG_4	26	0	+	0	0	.
chr9	39067803	39067804	chr9:39067804:G:C	rs1294671131	G	C	G	Sox1.mouse_HMG_4	4	1	-	5.266420636673317	1.1423554730021357	TGAACAAATCTTCA
chr9	40905999	40906000	chr9:40906000:T:C	rs1929517	T	C	.	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr9	40908077	40908078	chr9:40908078:C:T	rs4442253	C	T	.	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr9	40909098	40909099	chr9:40909099:A:T	rs74481819	A	T	.	Sox1.mouse_HMG_4	4	1	-	4.499144734865308	-2.3469372476332726	GGGATAAACATTCA
chr9	40913823	40913824	chr9:40913824:G:A	rs1440161901	G	A	.	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr9	40915041	40915042	chr9:40915042:C:T	rs1456267223	C	T	.	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr9	40915116	40915117	chr9:40915117:G:T	rs1294959992	G	T	.	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr9	40915537	40915538	chr9:40915538:A:G	chr9:40915538:A:G	A	G	.	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr9	40923439	40923440	chr9:40923440:G:A	rs75022009	G	A	.	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr9	40924063	40924064	chr9:40924064:T:C	rs75178718	T	C	.	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr9	40924959	40924960	chr9:40924960:G:C	rs80239760	G	C	.	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr9	40930655	40930656	chr9:40930656:A:G	rs56228849	A	G	.	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr9	42233222	42233223	chr9:42233223:A:C	rs142811630	A	C	-	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr9	62818859	62818860	chr9:62818860:G:A	rs79524865	G	A	.	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr9	68637316	68637317	chr9:68637317:G:A	rs78519753	G	A	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr9	68698632	68698633	chr9:68698633:C:T	rs772	C	T	C	Sox1.mouse_HMG_4	1	1	-	8.850647695145717	1.9418929158304972	TGAACAGACATGCA
chr9	68876445	68876446	chr9:68876446:G:T	rs781585873	G	T	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr9	69097221	69097222	chr9:69097222:T:G	rs13286479	T	G	T	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	69097241	69097242	chr9:69097242:T:C	rs569597276	T	C	T	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr9	69200236	69200237	chr9:69200237:T:C	rs4745688	T	C	C	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr9	69257271	69257272	chr9:69257272:G:T	chr9:69257272:G:T	G	T	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	69444173	69444174	chr9:69444174:C:T	rs146143426	C	T	C	Sox1.mouse_HMG_4	0	1	+	5.721888302597594	9.623438049772192	CGACTTAGCATTCA
chr9	69444197	69444198	chr9:69444198:G:T	rs1977552	G	T	G	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr9	70021212	70021213	chr9:70021213:A:G	rs149900552	A	G	A	Sox1.mouse_HMG_4	0	1	-	3.4940449317113984	-0.4075048154632004	TGAATGCCCAGTCT
chr9	70211954	70211955	chr9:70211955:T:C	rs139503540	T	C	T	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr9	70302893	70302894	chr9:70302894:T:G	rs12006212	T	G	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	70817460	70817461	chr9:70817461:T:C	rs56887849	T	C	T	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr9	70947282	70947283	chr9:70947283:T:C	rs150848605	T	C	T	Sox1.mouse_HMG_4	0	1	+	4.411587261327953	0.510037514153354	TGAACACCTATTTA
chr9	71250218	71250219	chr9:71250219:A:G	rs763359	A	G	A	Sox1.mouse_HMG_4	13	1	+	8.063363784098886	1.1806186681209176	TGAATAGCTATTTA
chr9	71679370	71679371	chr9:71679371:C:T	rs61478645	C	T	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	72147948	72147949	chr9:72147949:C:G	rs7863016	C	G	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr9	72822166	72822167	chr9:72822167:T:C	rs1330288	T	C	T	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr9	73041716	73041717	chr9:73041717:G:T	rs1539249	G	T	T	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr9	73082344	73082345	chr9:73082345:T:A	rs10869217	T	A	T	Sox1.mouse_HMG_4	2	1	-	7.452361485516704	0.5436067062014829	TGAATAGAAAATCA
chr9	73149813	73149814	chr9:73149814:G:A	rs986269250	G	A	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr9	73348705	73348706	chr9:73348706:T:A	rs78711639	T	A	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr9	73659437	73659438	chr9:73659438:A:C	rs61311685	A	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr9	73938953	73938954	chr9:73938954:G:A	rs995708	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr9	74507078	74507079	chr9:74507079:T:G	rs7873018	T	G	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr9	74722357	74722358	chr9:74722358:T:A	rs557122	T	A	A	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr9	74783031	74783032	chr9:74783032:A:G	rs79565470	A	G	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr9	75156807	75156808	chr9:75156808:A:G	rs2778480	A	G	a	Sox1.mouse_HMG_4	6	1	-	7.040169615750057	6.517956000509881	TGAATATAAATACA
chr9	75229077	75229078	chr9:75229078:G:A	rs1332363	G	A	A	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr9	75467964	75467965	chr9:75467965:T:C	rs2031734	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr9	75912632	75912633	chr9:75912633:A:G	rs1006279	A	G	G	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr9	76044833	76044834	chr9:76044834:T:C	rs12000319	T	C	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr9	76180757	76180758	chr9:76180758:A:C	chr9:76180758:A:C	A	C	A	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr9	76267916	76267917	chr9:76267917:C:T	rs2256029	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	76414881	76414882	chr9:76414882:C:G	rs10121699	C	G	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr9	76463672	76463673	chr9:76463673:A:T	rs1998588	A	T	A	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr9	76538517	76538518	chr9:76538518:G:A	rs78149183	G	A	G	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr9	76868603	76868604	chr9:76868604:G:A	rs57874200	G	A	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	77524642	77524643	chr9:77524643:T:C	rs10781442	T	C	C	Sox1.mouse_HMG_4	4	1	+	4.455053197256575	1.7330363784291751	TGAATCACTAATCA
chr9	77534829	77534830	chr9:77534830:C:T	chr9:77534830:C:T	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr9	77534851	77534852	chr9:77534852:G:A	rs35722681	G	A	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr9	77714539	77714540	chr9:77714540:T:C	rs77220415	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr9	77893817	77893818	chr9:77893818:A:T	rs10781469	A	T	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr9	78820975	78820976	chr9:78820976:T:G	rs572543807	T	G	T	Sox1.mouse_HMG_4	3	1	-	7.056342363287236	3.265856607545996	AGAATATAAATTCA
chr9	78917332	78917333	chr9:78917333:C:T	rs28795488	C	T	C	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr9	79300062	79300063	chr9:79300063:C:T	rs13290396	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr9	79300066	79300067	chr9:79300067:G:A	rs73653369	G	A	A	Sox1.mouse_HMG_4	12	1	-	7.601299404072184	0.6925446247569631	GGAATGAACAGTCA
chr9	79818850	79818851	chr9:79818851:G:T	rs7025574	G	T	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr9	79818882	79818883	chr9:79818883:A:G	rs7025335	A	G	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr9	80283076	80283077	chr9:80283077:C:G	rs7850590	C	G	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr9	80548922	80548923	chr9:80548923:A:G	rs62572771	A	G	A	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr9	80602445	80602446	chr9:80602446:C:G	rs1410543	C	G	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr9	80602461	80602462	chr9:80602462:A:G	rs1410542	A	G	G	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr9	80732449	80732450	chr9:80732450:T:G	rs12376556	T	G	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr9	80882016	80882017	chr9:80882017:A:G	rs74919046	A	G	A	Sox1.mouse_HMG_4	9	1	+	4.745972484459442	1.3811515969564365	AGAACTGCTATTCA
chr9	81022546	81022547	chr9:81022547:G:A	rs7038882	G	A	g	Sox1.mouse_HMG_4	11	1	+	4.083339532733779	0.7170787209525205	TGAATTGCCACGCA
chr9	81028494	81028495	chr9:81028495:C:A	rs1556447	C	A	C	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr9	81113672	81113673	chr9:81113673:C:T	rs62579826	C	T	T	Sox1.mouse_HMG_4	14	0	-	0	0	.
chr9	81398183	81398184	chr9:81398184:A:C	rs56201505	A	C	A	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr9	81398193	81398194	chr9:81398194:C:A	rs7048536	C	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr9	81405273	81405274	chr9:81405274:T:C	rs11139214	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr9	81530600	81530601	chr9:81530601:C:G	rs184187635	C	G	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr9	81640201	81640202	chr9:81640202:T:G	rs947673	T	G	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr9	81695665	81695666	chr9:81695666:C:G	rs11139369	C	G	c	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr9	81979331	81979332	chr9:81979332:C:T	rs79550739	C	T	C	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr9	82475641	82475642	chr9:82475642:G:A	rs12683121	G	A	G	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr9	82797594	82797595	chr9:82797595:G:A	rs759772382	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr9	83537111	83537112	chr9:83537112:C:T	rs62559801	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr9	84167092	84167093	chr9:84167093:G:A	rs2265725	G	A	G	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr9	84181487	84181488	chr9:84181488:T:C	rs2256453	T	C	C	Sox1.mouse_HMG_4	2	1	-	7.079015723098442	0.17026094378322054	GGAACACAAATTCA
chr9	84265915	84265916	chr9:84265916:A:G	rs17087017	A	G	A	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr9	84331691	84331692	chr9:84331692:T:C	rs980292	T	C	C	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	84652498	84652499	chr9:84652499:T:C	chr9:84652499:T:C	T	C	T	Sox1.mouse_HMG_4	4	1	+	4.790979111686672	2.068962292859272	TGAATAACCTGTCA
chr9	84792040	84792041	chr9:84792041:G:T	rs1838159	G	T	G	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr9	85001991	85001992	chr9:85001992:T:C	rs1565447	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr9	85173132	85173133	chr9:85173133:A:G	rs1387927	A	G	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr9	85331052	85331053	chr9:85331053:G:T	rs7022265	G	T	G	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr9	85405419	85405420	chr9:85405420:C:T	rs2254010	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr9	85421456	85421457	chr9:85421457:T:C	rs2814741	T	C	C	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr9	86406450	86406451	chr9:86406451:G:A	rs353804	G	A	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	86471702	86471703	chr9:86471703:T:A	rs75246479	T	A	T	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr9	86807658	86807659	chr9:86807659:G:A	rs143552148	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr9	86830665	86830666	chr9:86830666:G:A	rs1977459	G	A	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr9	86902658	86902659	chr9:86902659:G:A	rs59074920	G	A	G	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr9	86926439	86926440	chr9:86926440:G:A	rs11141618	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr9	86976328	86976329	chr9:86976329:G:A	rs10868513	G	A	A	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr9	87110353	87110354	chr9:87110354:T:C	rs7856774	T	C	C	Sox1.mouse_HMG_4	0	1	+	6.668729139691436	2.7671793925168355	TGAATACAAGGTCA
chr9	87187985	87187986	chr9:87187986:C:T	rs277716	C	T	T	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr9	87375492	87375493	chr9:87375493:A:G	rs905081287	A	G	a	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr9	87428325	87428326	chr9:87428326:C:T	rs12351631	C	T	C	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr9	87561936	87561937	chr9:87561937:C:G	rs7861017	C	G	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr9	87716356	87716357	chr9:87716357:C:T	rs55752263	C	T	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr9	87716389	87716390	chr9:87716390:C:A	rs1184966939	C	A	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr9	87850913	87850914	chr9:87850914:C:T	rs3887630	C	T	c	Sox1.mouse_HMG_4	7	1	-	6.7078392514777825	7.659266239439612	TGAATATGTGTGCA
chr9	89052768	89052769	chr9:89052769:G:A	rs17526378	G	A	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr9	89180806	89180807	chr9:89180807:G:A	rs34634428	G	A	G	Sox1.mouse_HMG_4	12	1	-	10.564049498281504	3.6552947189662834	TGAACGTGCATTCA
chr9	89631497	89631498	chr9:89631498:C:T	rs11265849	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr9	89743375	89743376	chr9:89743376:A:G	rs10797129	A	G	G	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr9	89848113	89848114	chr9:89848114:A:C	rs921356868	A	C	A	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr9	89878440	89878441	chr9:89878441:A:G	rs36154060	A	G	A	Sox1.mouse_HMG_4	4	1	-	6.668729139691436	3.9467123208640364	TGAATACAAGGTCA
chr9	90020570	90020571	chr9:90020571:G:T	rs661741	G	T	T	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr9	90565389	90565390	chr9:90565390:C:T	rs689913	C	T	C	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr9	90767774	90767775	chr9:90767775:C:A	rs1172989	C	A	.	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr9	91001142	91001143	chr9:91001143:C:T	rs73653527	C	T	C	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr9	91625594	91625595	chr9:91625595:T:G	rs10820885	T	G	T	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr9	91795843	91795844	chr9:91795844:T:C	rs4743852	T	C	T	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr9	91928601	91928602	chr9:91928602:T:G	rs75412536	T	G	T	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr9	92151182	92151183	chr9:92151183:G:A	rs190528913	G	A	G	Sox1.mouse_HMG_4	27	0	+	0	0	.
chr9	92343244	92343245	chr9:92343245:G:A	rs72750502	G	A	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr9	92491530	92491531	chr9:92491531:T:C	rs115745038	T	C	T	Sox1.mouse_HMG_4	3	1	-	6.836304699921235	-0.051115209882961254	TGAATGCACAGGCA
chr9	92547440	92547441	chr9:92547441:C:T	rs7037068	C	T	C	Sox1.mouse_HMG_4	11	1	-	4.107430459087238	0.7411696473059799	TGTATGGCTATGCA
chr9	92654115	92654116	chr9:92654116:C:T	rs12236013	C	T	C	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr9	92654147	92654148	chr9:92654148:A:C	rs117629410	A	C	A	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr9	92963243	92963244	chr9:92963244:C:T	rs75384874	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr9	93325118	93325119	chr9:93325119:T:C	rs73512403	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr9	93343579	93343580	chr9:93343580:T:C	rs79887866	T	C	T	Sox1.mouse_HMG_4	10	1	+	8.126833153503386	1.251064020379105	TGAACTGACATTCC
chr9	93538602	93538603	chr9:93538603:A:G	rs10821153	A	G	A	Sox1.mouse_HMG_4	13	1	+	4.534399819680883	-2.348345296297086	TGAACAGGCGTGCA
chr9	93606354	93606355	chr9:93606355:G:A	rs4743929	G	A	C	Sox1.mouse_HMG_4	0	1	-	7.157849337504021	11.05939908467862	CGAACTCTCATTCA
chr9	93606373	93606374	chr9:93606374:T:C	rs10761242	T	C	T	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr9	94011477	94011478	chr9:94011478:G:A	rs4743942	G	A	G	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr9	94867385	94867386	chr9:94867386:A:G	rs1283525624	A	G	A	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr9	94867518	94867519	chr9:94867519:G:A	rs72748519	G	A	G	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr9	95157604	95157605	chr9:95157605:T:C	rs796265415	T	C	T	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr9	95413480	95413481	chr9:95413481:G:A	rs357562	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr9	95422922	95422923	chr9:95422923:G:A	rs28459853	G	A	G	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr9	95450269	95450270	chr9:95450270:C:T	rs16909875	C	T	C	Sox1.mouse_HMG_4	-5	0	+	0	0	.
chr9	95880056	95880057	chr9:95880057:G:C	rs75495783	G	C	G	Sox1.mouse_HMG_4	1	1	+	4.494676513175725	-2.4140782661394953	TGTATGGTTAGTCA
chr9	96112450	96112451	chr9:96112451:C:T	rs10819883	C	T	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr9	96112477	96112478	chr9:96112478:T:A	rs10819884	T	A	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr9	96331375	96331376	chr9:96331376:G:A	rs144817549	G	A	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr9	96335244	96335245	chr9:96335245:T:C	rs6479272	T	C	C	Sox1.mouse_HMG_4	9	1	-	4.084175677180664	0.7193547896776569	TGAGCGGGCATTCA
chr9	96514222	96514223	chr9:96514223:A:C	rs894119456	A	C	A	Sox1.mouse_HMG_4	3	1	+	11.230364376122193	7.439878620380955	GGAATGATCATTCA
chr9	97300548	97300549	chr9:97300549:A:G	rs1841683	A	G	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	97406515	97406516	chr9:97406516:A:T	rs11793735	A	T	C	Sox1.mouse_HMG_4	3	1	+	7.546156334768233	0.658736424964036	TGAACTACAAGTCA
chr9	97529805	97529806	chr9:97529806:G:C	rs781031640	G	C	G	Sox1.mouse_HMG_4	3	1	-	4.0379447357303455	0.9410105816673884	TGACTTGTCATTCT
chr9	97651836	97651837	chr9:97651837:A:G	rs61221847	A	G	G	Sox1.mouse_HMG_4	9	1	+	4.801011688577959	1.4361908010749518	TGAATCATCATTTA
chr9	97852717	97852718	chr9:97852718:A:G	rs72753509	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.971369080311465	-0.9044000528128153	CGAATGAGTATTCC
chr9	97859906	97859907	chr9:97859907:A:G	rs907581	A	G	G	Sox1.mouse_HMG_4	7	1	-	4.972358357170735	4.734445517985551	TGAACTGTTTTTCA
chr9	98582057	98582058	chr9:98582058:G:A	rs2779527	G	A	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr9	98606893	98606894	chr9:98606894:G:C	rs118114093	G	C	G	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr9	98697984	98697985	chr9:98697985:G:A	rs337547	G	A	G	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr9	98790672	98790673	chr9:98790673:T:C	rs7027771	T	C	T	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr9	98856896	98856897	chr9:98856897:C:T	rs1322539	C	T	T	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr9	98871574	98871575	chr9:98871575:G:A	rs2900125	G	A	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr9	99126502	99126503	chr9:99126503:G:C	rs10988717	G	C	g	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr9	99180925	99180926	chr9:99180926:G:T	rs115443278	G	T	G	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr9	99849779	99849780	chr9:99849780:A:G	rs73499688	A	G	a	Sox1.mouse_HMG_4	28	0	+	0	0	.
chr9	100869447	100869448	chr9:100869448:G:C	rs17751690	G	C	G	Sox1.mouse_HMG_4	12	1	-	7.503525039540114	0.5947702602248934	TGACCACATATTCA
chr9	101000188	101000189	chr9:101000189:A:T	rs993021078	A	T	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr9	101927809	101927810	chr9:101927810:C:T	rs7867903	C	T	C	Sox1.mouse_HMG_4	33	0	-	0	0	.
chr9	102029150	102029151	chr9:102029151:G:A	rs3012616	G	A	G	Sox1.mouse_HMG_4	-2	0	-	0	0	.
chr9	102479182	102479183	chr9:102479183:A:C	rs10990125	A	C	A	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr9	102806343	102806344	chr9:102806344:A:G	rs4742856	A	G	G	Sox1.mouse_HMG_4	10	1	+	5.909045933458113	9.419994179079387	TGAATTCCAAATCA
chr9	103041513	103041514	chr9:103041514:G:A	rs6479153	G	A	G	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr9	104026099	104026100	chr9:104026100:T:C	rs551563	T	C	T	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr9	104026138	104026139	chr9:104026139:C:T	rs138922403	C	T	C	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr9	104049260	104049261	chr9:104049261:C:T	rs10991053	C	T	C	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	104076257	104076258	chr9:104076258:T:C	rs1329625	T	C	c	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr9	104093645	104093646	chr9:104093646:T:C	rs73663495	T	C	T	Sox1.mouse_HMG_4	4	1	+	8.063363784098886	5.341346965271488	TGAATAGCTATTTA
chr9	104138757	104138758	chr9:104138758:G:A	rs6479222	G	A	G	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr9	104864946	104864947	chr9:104864947:A:G	rs78136102	A	G	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr9	104864977	104864978	chr9:104864978:G:A	rs4149279	G	A	G	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	104911194	104911195	chr9:104911195:A:C	chr9:104911195:A:C	A	C	A	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr9	105044799	105044800	chr9:105044800:A:G	rs78622915	A	G	A	Sox1.mouse_HMG_4	4	1	-	5.894241654570183	3.1722248357427834	AGAATTCAAATTCA
chr9	105185185	105185186	chr9:105185186:T:C	rs75381641	T	C	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr9	105234206	105234207	chr9:105234207:A:T	rs74849027	A	T	A	Sox1.mouse_HMG_4	12	1	-	6.731629825863661	6.731629825863661	TGAATTCTTATTTA
chr9	105921318	105921319	chr9:105921319:A:G	rs10816353	A	G	A	Sox1.mouse_HMG_4	5	1	+	7.575221014484316	7.133441791878977	TGAAGACTCATTCA
chr9	105921329	105921330	chr9:105921330:C:T	rs975686905	C	T	C	Sox1.mouse_HMG_4	16	0	+	0	0	.
chr9	106109368	106109369	chr9:106109369:T:C	rs13284224	T	C	T	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr9	106260723	106260724	chr9:106260724:C:T	rs139097135	C	T	c	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr9	106531882	106531883	chr9:106531883:G:A	rs73507144	G	A	G	Sox1.mouse_HMG_4	-15	0	+	0	0	.
chr9	106531930	106531931	chr9:106531931:A:G	rs62577101	A	G	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr9	106755253	106755254	chr9:106755254:G:A	rs16925815	G	A	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr9	106757567	106757568	chr9:106757568:C:T	rs725773	C	T	C	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr9	106877614	106877615	chr9:106877615:A:C	rs4743036	A	C	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr9	106879942	106879943	chr9:106879943:T:A	rs59826021	T	A	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr9	107060186	107060187	chr9:107060187:A:G	rs548716581	A	G	A	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	107089315	107089316	chr9:107089316:C:A	rs7873660	C	A	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr9	107240897	107240898	chr9:107240898:G:T	rs7866312	G	T	T	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr9	107275036	107275037	chr9:107275037:T:C	rs143733691	T	C	T	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr9	107423665	107423666	chr9:107423666:A:G	rs13287696	A	G	A	Sox1.mouse_HMG_4	-18	0	+	0	0	.
chr9	107423713	107423714	chr9:107423714:A:G	rs13287839	A	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	107435565	107435566	chr9:107435566:C:A	rs2417793	C	A	A	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	107464702	107464703	chr9:107464703:C:A	rs60083889	C	A	C	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr9	107593385	107593386	chr9:107593386:A:T	rs11795360	A	T	A	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr9	107686305	107686306	chr9:107686306:G:A	rs35396193	G	A	G	Sox1.mouse_HMG_4	12	1	-	5.126189714220966	-1.7825650650942546	TGAATGCGAAGGCA
chr9	107705141	107705142	chr9:107705142:A:G	rs6477590	A	G	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr9	107705300	107705301	chr9:107705301:T:G	rs1330145	T	G	G	Sox1.mouse_HMG_4	-4	0	+	0	0	.
chr9	107717867	107717868	chr9:107717868:C:A	rs7038436	C	A	C	Sox1.mouse_HMG_4	5	1	-	4.290834519616148	4.09272664874461	TGAAGGTTCAGTCA
chr9	107918912	107918913	chr9:107918913:A:G	chr9:107918913:A:G	A	G	A	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr9	107948325	107948326	chr9:107948326:G:A	rs35127258	G	A	G	Sox1.mouse_HMG_4	6	1	-	6.238863206173287	6.761076821413464	TGACTTCCCATGCA
chr9	108136910	108136911	chr9:108136911:T:C	rs12379962	T	C	T	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	108191303	108191304	chr9:108191304:T:A	rs28450518	T	A	T	Sox1.mouse_HMG_4	9	1	-	4.274471420751631	-2.6012977123726517	TGAATGGCCATGCT
chr9	108443460	108443461	chr9:108443461:C:G	rs665447	C	G	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	108787380	108787381	chr9:108787381:G:A	rs72755976	G	A	G	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr9	108951757	108951758	chr9:108951758:T:C	rs2417959	T	C	T	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr9	108951792	108951793	chr9:108951793:G:A	rs144560573	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr9	109019508	109019509	chr9:109019509:A:G	rs13293236	A	G	A	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr9	109129076	109129077	chr9:109129077:T:C	rs56017327	T	C	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	109435231	109435232	chr9:109435232:A:C	rs16914135	A	C	C	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr9	109586594	109586595	chr9:109586595:T:C	rs13285692	T	C	T	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr9	109586601	109586602	chr9:109586602:C:T	rs13284589	C	T	C	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr9	109708736	109708737	chr9:109708737:T:C	rs956467	T	C	C	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr9	109751618	109751619	chr9:109751619:G:C	rs77174681	G	C	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr9	110050460	110050461	chr9:110050461:T:C	rs260216	T	C	T	Sox1.mouse_HMG_4	11	1	+	6.522601781573168	-0.3578131326144012	TGAATACAATTTCA
chr9	110050464	110050465	chr9:110050465:A:G	rs117475894	A	G	A	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr9	110130569	110130570	chr9:110130570:A:T	rs1571261	A	T	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr9	110576350	110576351	chr9:110576351:G:A	rs34374605	G	A	G	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr9	110578273	110578274	chr9:110578274:A:T	rs7855189	A	T	A	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr9	110641084	110641085	chr9:110641085:A:C	rs3010823	A	C	C	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr9	110750608	110750609	chr9:110750609:C:T	rs2298493	C	T	C	Sox1.mouse_HMG_4	12	1	+	5.909045933458113	-0.9997088458571073	TGAATTCCAACTCA
chr9	110869998	110869999	chr9:110869999:A:C	rs693342	A	C	C	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr9	111016730	111016731	chr9:111016731:A:G	rs1030006	A	G	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr9	111251383	111251384	chr9:111251384:T:C	rs17227846	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr9	111282763	111282764	chr9:111282764:A:G	rs10980846	A	G	A	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr9	111723469	111723470	chr9:111723470:A:C	rs4979042	A	C	A	Sox1.mouse_HMG_4	17	0	-	0	0	.
chr9	112034555	112034556	chr9:112034556:G:T	rs35248968	G	T	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr9	112244395	112244396	chr9:112244396:G:T	rs10817298	G	T	G	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr9	112305327	112305328	chr9:112305328:T:C	rs114897259	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.403575835991565	-2.4721932971327165	GGAATAGCCATGCC
chr9	113131959	113131960	chr9:113131960:G:A	rs7867889	G	A	G	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr9	113206397	113206398	chr9:113206398:T:C	rs1133620	T	C	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr9	113340886	113340887	chr9:113340887:T:C	rs12235345	T	C	T	Sox1.mouse_HMG_4	6	1	-	5.374466288809518	5.456047018236808	TCAACAAACATTCA
chr9	113340899	113340900	chr9:113340900:C:G	rs12350131	C	G	G	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr9	113625797	113625798	chr9:113625798:G:A	rs10981845	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	113984835	113984836	chr9:113984836:G:A	rs814701	G	A	A	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr9	114024726	114024727	chr9:114024727:C:T	rs116345493	C	T	C	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr9	114212325	114212326	chr9:114212326:T:C	rs10119723	T	C	C	Sox1.mouse_HMG_4	24	0	-	0	0	.
chr9	114212377	114212378	chr9:114212378:T:C	rs2567727	T	C	T	Sox1.mouse_HMG_4	-9	0	-	0	0	.
chr9	114234589	114234590	chr9:114234590:T:C	rs1542737	T	C	C	Sox1.mouse_HMG_4	-4	0	-	0	0	.
chr9	114279332	114279333	chr9:114279333:G:A	rs73548912	G	A	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr9	114286192	114286193	chr9:114286193:G:A	rs16927834	G	A	G	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr9	114321947	114321948	chr9:114321948:C:T	rs2787337	C	T	C	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	114325783	114325784	chr9:114325784:T:A	rs10982156	T	A	A	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	114329288	114329289	chr9:114329289:A:G	rs10817591	A	G	G	Sox1.mouse_HMG_4	13	1	+	4.580725464292599	-2.30201965168537	GAAATAGACATTCA
chr9	114449732	114449733	chr9:114449733:C:G	rs10739414	C	G	C	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr9	114463264	114463265	chr9:114463265:C:T	rs10982229	C	T	C	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr9	114681946	114681947	chr9:114681947:T:C	rs13286744	T	C	C	Sox1.mouse_HMG_4	5	1	-	4.411587261327954	3.969808038722615	TGGACACCTATTCA
chr9	114776053	114776054	chr9:114776054:C:T	rs4574921	C	T	T	Sox1.mouse_HMG_4	1	1	-	4.907642345656242	-2.0011124336589745	GGAAAAGTCATTCA
chr9	114903154	114903155	chr9:114903155:A:G	rs3181372	A	G	G	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	114924451	114924452	chr9:114924452:A:T	rs10982453	A	T	T	Sox1.mouse_HMG_4	24	0	+	0	0	.
chr9	114989247	114989248	chr9:114989248:C:G	rs16932015	C	G	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr9	115104144	115104145	chr9:115104145:A:G	rs1273108	A	G	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr9	115212437	115212438	chr9:115212438:G:T	rs10817726	G	T	G	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr9	115483554	115483555	chr9:115483555:C:T	rs4979541	C	T	T	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr9	115616821	115616822	chr9:115616822:G:T	rs3899074	G	T	T	Sox1.mouse_HMG_4	6	1	+	14.671370639135908	14.263824550432549	TGAATGGCCATTCA
chr9	115754405	115754406	chr9:115754406:G:C	rs4495505	G	C	C	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr9	115944112	115944113	chr9:115944113:A:T	rs1450197	A	T	A	Sox1.mouse_HMG_4	22	0	-	0	0	.
chr9	115997706	115997707	chr9:115997707:G:A	rs204191	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr9	116697563	116697564	chr9:116697564:G:A	rs73515229	G	A	G	Sox1.mouse_HMG_4	16	0	-	0	0	.
chr9	116721409	116721410	chr9:116721410:C:T	rs10983320	C	T	T	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr9	116722099	116722100	chr9:116722100:T:C	rs1470185	T	C	C	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr9	116830456	116830457	chr9:116830457:G:C	rs9802585	G	C	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr9	117075570	117075571	chr9:117075571:C:T	rs17307967	C	T	C	Sox1.mouse_HMG_4	28	0	-	0	0	.
chr9	117250141	117250142	chr9:117250142:A:G	rs1335419	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.
chr9	117403332	117403333	chr9:117403333:C:T	rs7467917	C	T	C	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr9	117672803	117672804	chr9:117672804:A:T	rs10983744	A	T	A	Sox1.mouse_HMG_4	18	0	+	0	0	.
chr9	117829980	117829981	chr9:117829981:G:A	rs12337036	G	A	G	Sox1.mouse_HMG_4	12	1	-	4.70811427262373	-2.2006405066914905	TGAACTGATAATCA
chr9	117959060	117959061	chr9:117959061:A:C	rs2254331	A	C	A	Sox1.mouse_HMG_4	0	1	-	7.3155647158329	3.718226343061292	TGTATTAATATTCA
chr9	118437706	118437707	chr9:118437707:G:C	rs1342481	G	C	G	Sox1.mouse_HMG_4	-11	0	-	0	0	.
chr9	118455446	118455447	chr9:118455447:C:T	rs1342490	C	T	C	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr9	118575615	118575616	chr9:118575616:T:G	rs80218559	T	G	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr9	119357918	119357919	chr9:119357919:T:G	rs1324623	T	G	G	Sox1.mouse_HMG_4	19	0	-	0	0	.
chr9	119366832	119366833	chr9:119366833:A:G	rs11794259	A	G	A	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr9	120153951	120153952	chr9:120153952:T:A	rs7855281	T	A	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	120243292	120243293	chr9:120243293:T:A	rs10984879	T	A	t	Sox1.mouse_HMG_4	10	1	+	10.99663987135439	4.120870738230108	TGAATAATAATGCA
chr9	120349227	120349228	chr9:120349228:G:T	rs78069211	G	T	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr9	120384141	120384142	chr9:120384142:C:G	chr9:120384142:C:G	C	G	C	Sox1.mouse_HMG_4	7	1	-	4.50462003027498	5.482378263598629	TTAACAGGCATTCA
chr9	120587517	120587518	chr9:120587518:T:C	rs10760105	T	C	T	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr9	120587519	120587520	chr9:120587520:T:C	rs10760106	T	C	T	Sox1.mouse_HMG_4	-14	0	+	0	0	.
chr9	120875990	120875991	chr9:120875991:T:C	rs2297574	T	C	T	Sox1.mouse_HMG_4	18	0	-	0	0	.
chr9	120917307	120917308	chr9:120917308:T:C	rs183767041	T	C	T	Sox1.mouse_HMG_4	-6	0	-	0	0	.
chr9	121139315	121139316	chr9:121139316:T:G	rs4837811	T	G	G	Sox1.mouse_HMG_4	15	0	+	0	0	.
chr9	121658104	121658105	chr9:121658105:T:C	rs145749173	T	C	T	Sox1.mouse_HMG_4	9	1	-	4.670689242157316	1.3058683546543088	TGAATCGCCATTCT
chr9	121679760	121679761	chr9:121679761:T:C	rs7875072	T	C	C	Sox1.mouse_HMG_4	10	1	-	8.237380728616968	11.748328974238241	TGAATAGCCAATCA
chr9	121949856	121949857	chr9:121949857:G:A	rs7028210	G	A	G	Sox1.mouse_HMG_4	-15	0	-	0	0	.
chr9	122127651	122127652	chr9:122127652:T:G	rs115111912	T	G	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr9	122127653	122127654	chr9:122127654:T:G	rs7022341	T	G	G	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr9	122403514	122403515	chr9:122403515:C:T	rs4837963	C	T	C	Sox1.mouse_HMG_4	23	0	+	0	0	.
chr9	122947158	122947159	chr9:122947159:A:T	rs112273545	A	T	A	Sox1.mouse_HMG_4	13	1	+	7.642481597196545	0.7597364812185754	TGAAATATTATTCA
chr9	123003834	123003835	chr9:123003835:G:A	rs10985854	G	A	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	123022700	123022701	chr9:123022701:G:A	rs147514998	G	A	G	Sox1.mouse_HMG_4	-19	0	+	0	0	.
chr9	123022723	123022724	chr9:123022724:T:C	rs10760265	T	C	T	Sox1.mouse_HMG_4	4	1	+	7.629486450033707	4.907469631206308	TGAATATATATTAA
chr9	123493756	123493757	chr9:123493757:T:C	rs2808396	T	C	C	Sox1.mouse_HMG_4	4	1	+	7.835406474325273	5.113389655497874	TGAATTGTCACTCA
chr9	123605425	123605426	chr9:123605426:G:A	rs12115650	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr9	123643800	123643801	chr9:123643801:T:C	rs80129328	T	C	T	Sox1.mouse_HMG_4	-5	0	-	0	0	.
chr9	124047172	124047173	chr9:124047173:G:A	rs72757191	G	A	G	Sox1.mouse_HMG_4	-7	0	+	0	0	.
chr9	124097305	124097306	chr9:124097306:G:A	rs74761450	G	A	G	Sox1.mouse_HMG_4	19	0	+	0	0	.
chr9	124320095	124320096	chr9:124320096:G:A	rs2150237	G	A	g	Sox1.mouse_HMG_4	20	0	-	0	0	.
chr9	124502233	124502234	chr9:124502234:G:A	rs928547	G	A	G	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr9	124560073	124560074	chr9:124560074:C:G	rs116054515	C	G	c	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	125075091	125075092	chr9:125075092:T:C	rs75129264	T	C	T	Sox1.mouse_HMG_4	-7	0	-	0	0	.
chr9	125091436	125091437	chr9:125091437:T:C	rs589748	T	C	C	Sox1.mouse_HMG_4	10	1	+	8.198673032880917	1.3229038997566354	TGACCTGTCATTCA
chr9	125371381	125371382	chr9:125371382:T:A	rs1965342	T	A	T	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	125985608	125985609	chr9:125985609:A:C	rs10987078	A	C	C	Sox1.mouse_HMG_4	-10	0	+	0	0	.
chr9	126014525	126014526	chr9:126014526:G:T	rs12341304	G	T	G	Sox1.mouse_HMG_4	-12	0	+	0	0	.
chr9	126310924	126310925	chr9:126310925:G:A	rs473586	G	A	G	Sox1.mouse_HMG_4	-10	0	-	0	0	.
chr9	126310971	126310972	chr9:126310972:G:C	rs474359	G	C	G	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	126392982	126392983	chr9:126392983:A:G	rs77175703	A	G	A	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr9	126853806	126853807	chr9:126853807:A:G	rs149647794	A	G	A	Sox1.mouse_HMG_4	-16	0	+	0	0	.
chr9	127139263	127139264	chr9:127139264:C:G	rs7874020	C	G	C	Sox1.mouse_HMG_4	4	1	+	4.362678643123968	0.23861347945278677	TGACCTGCCATTCC
chr9	127233288	127233289	chr9:127233289:T:A	rs149811214	T	A	T	Sox1.mouse_HMG_4	33	0	+	0	0	.
chr9	127440627	127440628	chr9:127440628:G:A	rs7046875	G	A	G	Sox1.mouse_HMG_4	23	0	-	0	0	.
chr9	127837678	127837679	chr9:127837679:C:T	rs2005129	C	T	C	Sox1.mouse_HMG_4	14	0	+	0	0	.
chr9	128027480	128027481	chr9:128027481:C:T	rs137986417	C	T	C	Sox1.mouse_HMG_4	21	0	-	0	0	.
chr9	128546867	128546868	chr9:128546868:A:G	rs10819400	A	G	A	Sox1.mouse_HMG_4	-13	0	-	0	0	.
chr9	128549777	128549778	chr9:128549778:A:G	rs76124408	A	G	G	Sox1.mouse_HMG_4	20	0	+	0	0	.
chr9	128698660	128698661	chr9:128698661:C:T	rs1241474461	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr9	129181563	129181564	chr9:129181564:A:G	rs967497	A	G	A	Sox1.mouse_HMG_4	10	1	-	5.00659888905626	-1.8691702440680207	TGAACCTTTATGCA
chr9	129246765	129246766	chr9:129246766:T:C	rs927927	T	C	t	Sox1.mouse_HMG_4	30	0	-	0	0	.
chr9	129398020	129398021	chr9:129398021:A:G	rs10988350	A	G	A	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr9	129434410	129434411	chr9:129434411:C:G	rs73670106	C	G	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	129932467	129932468	chr9:129932468:C:T	rs73552663	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	130030724	130030725	chr9:130030725:T:G	rs78400266	T	G	T	Sox1.mouse_HMG_4	0	1	+	4.695950608742098	1.0986122359704886	TGAATATTCAGTCT
chr9	130159209	130159210	chr9:130159210:G:T	rs143007468	G	T	G	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr9	130305507	130305508	chr9:130305508:T:C	rs76915405	T	C	T	Sox1.mouse_HMG_4	-3	0	+	0	0	.
chr9	130458783	130458784	chr9:130458784:C:T	rs1215986	C	T	C	Sox1.mouse_HMG_4	4	1	+	4.136849000387006	6.8588658192144045	TGAACGCCCATTCT
chr9	130625311	130625312	chr9:130625312:C:G	rs12001795	C	G	G	Sox1.mouse_HMG_4	-11	0	+	0	0	.
chr9	130698618	130698619	chr9:130698619:G:A	rs372103425	G	A	G	Sox1.mouse_HMG_4	10	1	+	6.80926853525479	3.2983202896335158	TGAATTGAAAGGCA
chr9	130762960	130762961	chr9:130762961:A:G	rs995924321	A	G	A	Sox1.mouse_HMG_4	22	0	+	0	0	.
chr9	130781882	130781883	chr9:130781883:C:T	rs2855178	C	T	C	Sox1.mouse_HMG_4	-17	0	+	0	0	.
chr9	130781893	130781894	chr9:130781894:A:G	rs2855179	A	G	G	Sox1.mouse_HMG_4	-6	0	+	0	0	.
chr9	131397380	131397381	chr9:131397381:C:T	rs147661773	C	T	C	Sox1.mouse_HMG_4	31	0	-	0	0	.
chr9	131439098	131439099	chr9:131439099:G:A	rs45534131	G	A	G	Sox1.mouse_HMG_4	25	0	-	0	0	.
chr9	131553758	131553759	chr9:131553759:C:T	rs4740277	C	T	C	Sox1.mouse_HMG_4	10	1	+	3.351687699661783	10.227456832786062	TGAATGCCCACGCA
chr9	131562259	131562260	chr9:131562260:C:T	rs6597508	C	T	c	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr9	132058342	132058343	chr9:132058343:C:T	rs4246167	C	T	C	Sox1.mouse_HMG_4	-17	0	-	0	0	.
chr9	132619281	132619282	chr9:132619282:T:C	rs306568	T	C	T	Sox1.mouse_HMG_4	7	1	-	6.629751909154819	5.67832492119299	TGATTTCACATTCA
chr9	132754556	132754557	chr9:132754557:A:G	rs7868546	A	G	G	Sox1.mouse_HMG_4	27	0	-	0	0	.
chr9	132794251	132794252	chr9:132794252:T:C	rs373718084	T	C	t	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	132810129	132810130	chr9:132810130:C:T	rs412111	C	T	C	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	132851681	132851682	chr9:132851682:G:A	rs111753379	G	A	G	Sox1.mouse_HMG_4	4	1	-	4.563133232733671	7.28515005156107	TGACCGACCATGCA
chr9	132898671	132898672	chr9:132898672:T:C	rs756769	T	C	T	Sox1.mouse_HMG_4	10	1	+	4.8465730897776105	-2.02919604334667	TGGATAATCATGCA
chr9	133007390	133007391	chr9:133007391:A:T	rs682437	A	T	A	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr9	133022674	133022675	chr9:133022675:C:A	rs683237	C	A	c	Sox1.mouse_HMG_4	15	0	-	0	0	.
chr9	133022703	133022704	chr9:133022704:G:A	rs113756918	G	A	g	Sox1.mouse_HMG_4	-14	0	-	0	0	.
chr9	133182217	133182218	chr9:133182218:G:A	rs10124364	G	A	G	Sox1.mouse_HMG_4	29	0	-	0	0	.
chr9	133349221	133349222	chr9:133349222:G:A	rs138377720	G	A	G	Sox1.mouse_HMG_4	5	1	+	4.002594947753374	4.444374170358713	TGAGCGAGCATTCA
chr9	133477729	133477730	chr9:133477730:C:T	rs118094162	C	T	C	Sox1.mouse_HMG_4	5	1	-	4.870965791475116	5.312745014080453	TGAACGTTCATTGA
chr9	133565433	133565434	chr9:133565434:A:G	rs374060310	A	G	A	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr9	133963245	133963246	chr9:133963246:G:A	rs10119727	G	A	A	Sox1.mouse_HMG_4	10	1	+	4.554127082075576	1.0431788364543013	TTAATGATCAGTCA
chr9	134332825	134332826	chr9:134332826:G:T	rs141749220	G	T	G	Sox1.mouse_HMG_4	-20	0	+	0	0	.
chr9	134332844	134332845	chr9:134332845:G:A	rs62576298	G	A	A	Sox1.mouse_HMG_4	-1	0	+	0	0	.
chr9	134433251	134433252	chr9:134433252:G:A	rs185688382	G	A	G	Sox1.mouse_HMG_4	-2	0	+	0	0	.
chr9	134521248	134521249	chr9:134521249:A:G	rs4842028	A	G	a	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr9	134562598	134562599	chr9:134562599:T:C	rs68149465	T	C	C	Sox1.mouse_HMG_4	6	1	+	8.21387483721706	7.691661221976883	TGAATATTCGGTCA
chr9	134705102	134705103	chr9:134705103:T:C	rs4842145	T	C	C	Sox1.mouse_HMG_4	13	1	-	7.355735307546786	0.47299019156881705	TGAATCCTTGTTCA
chr9	134705135	134705136	chr9:134705136:G:A	rs4842146	G	A	G	Sox1.mouse_HMG_4	-20	0	-	0	0	.
chr9	134888976	134888977	chr9:134888977:C:T	rs6537958	C	T	C	Sox1.mouse_HMG_4	25	0	+	0	0	.
chr9	134978467	134978468	chr9:134978468:C:T	rs114265175	C	T	C	Sox1.mouse_HMG_4	17	0	+	0	0	.
chr9	135014847	135014848	chr9:135014848:A:G	rs11103631	A	G	G	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr9	135145525	135145526	chr9:135145526:G:A	rs11103712	G	A	A	Sox1.mouse_HMG_4	-1	0	-	0	0	.
chr9	135289381	135289382	chr9:135289382:T:C	rs11103796	T	C	T	Sox1.mouse_HMG_4	6	1	-	5.444274594069987	5.525855323497278	GGAACAATTAGTCA
chr9	135289399	135289400	chr9:135289400:T:C	rs145465052	T	C	T	Sox1.mouse_HMG_4	-12	0	-	0	0	.
chr9	135304103	135304104	chr9:135304104:A:G	rs12686360	A	G	a	Sox1.mouse_HMG_4	13	1	+	4.258772293756373	-2.623972822221597	TGAATGGATAGACA
chr9	135345667	135345668	chr9:135345668:C:T	rs1411991	C	T	c	Sox1.mouse_HMG_4	-3	0	-	0	0	.
chr9	135408898	135408899	chr9:135408899:A:G	rs9409950	A	G	A	Sox1.mouse_HMG_4	-9	0	+	0	0	.
chr9	135536798	135536799	chr9:135536799:G:A	rs210081	G	A	-	Sox1.mouse_HMG_4	29	0	+	0	0	.
chr9	135925153	135925154	chr9:135925154:T:C	rs11103224	T	C	T	Sox1.mouse_HMG_4	9	1	+	4.76756484152358	4.76756484152358	TGAACTAACTTTCA
chr9	135925156	135925157	chr9:135925157:C:G	rs11103225	C	G	C	Sox1.mouse_HMG_4	12	1	+	4.76756484152358	-2.1411899377916406	TGAACTAACTTTCA
chr9	135966522	135966523	chr9:135966523:C:T	rs11103241	C	T	C	Sox1.mouse_HMG_4	-16	0	-	0	0	.
chr9	136019299	136019300	chr9:136019300:C:T	rs78750824	C	T	C	Sox1.mouse_HMG_4	21	0	+	0	0	.
chr9	136148570	136148571	chr9:136148571:C:T	rs753037	C	T	C	Sox1.mouse_HMG_4	-19	0	-	0	0	.
chr9	136310333	136310334	chr9:136310334:G:A	rs1000598275	G	A	G	Sox1.mouse_HMG_4	32	0	+	0	0	.
chr9	136441426	136441427	chr9:136441427:G:A	rs3812589	G	A	A	Sox1.mouse_HMG_4	-8	0	+	0	0	.
chr9	136470132	136470133	chr9:136470133:A:G	rs11145756	A	G	a	Sox1.mouse_HMG_4	13	1	+	8.769066965718428	1.886321849740459	TGAACAAACATGCA
chr9	136572424	136572425	chr9:136572425:G:A	rs559034770	G	A	G	Sox1.mouse_HMG_4	-13	0	+	0	0	.
chr9	136572467	136572468	chr9:136572468:A:G	rs17065115	A	G	A	Sox1.mouse_HMG_4	30	0	+	0	0	.
chr9	136721495	136721496	chr9:136721496:T:C	rs7466679	T	C	T	Sox1.mouse_HMG_4	32	0	-	0	0	.
chr9	136721516	136721517	chr9:136721517:A:T	rs148083547	A	T	A	Sox1.mouse_HMG_4	11	1	-	9.933218988947589	3.0528040747600214	TGAACTAGAATTCA
chr9	136955666	136955667	chr9:136955667:G:A	rs868102	G	A	G	Sox1.mouse_HMG_4	5	1	+	4.078828507896204	4.520607730501542	TGTATGTTCATGCA
chr9	136979479	136979480	chr9:136979480:G:A	rs117121325	G	A	G	Sox1.mouse_HMG_4	31	0	+	0	0	.
chr9	138046149	138046150	chr9:138046150:G:C	rs7849670	G	C	G	Sox1.mouse_HMG_4	26	0	-	0	0	.
chr9	138046626	138046627	chr9:138046627:A:G	rs6559261	A	G	A	Sox1.mouse_HMG_4	-18	0	-	0	0	.