chr1	633070	633071	chr1:633071:C:T	rs78032279	C	T	.	Sox1.mouse_HMG_3	3	1	-	8.961968847190747	15.762996009107752	TCAGTACCATTGA
chr1	2402821	2402822	chr1:2402822:G:T	rs72642191	G	T	g	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr1	2541698	2541699	chr1:2541699:C:T	rs374224216	C	T	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	3057011	3057012	chr1:3057012:G:A	rs1109251	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	3135700	3135701	chr1:3135701:A:C	rs7535865	A	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	3312693	3312694	chr1:3312694:A:G	rs12409315	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	3683854	3683855	chr1:3683855:A:G	rs3765709	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	3712098	3712099	chr1:3712099:A:G	rs6424089	A	G	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	3712112	3712113	chr1:3712113:A:G	rs6424090	A	G	G	Sox1.mouse_HMG_3	8	1	+	8.091169041189815	1.1824142618745945	TCAATTGCATTAT
chr1	4172456	4172457	chr1:4172457:C:T	rs12405392	C	T	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	4172478	4172479	chr1:4172479:A:G	rs56827341	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.862899987493106	1.9759904796925973	TCAATACCATGGA
chr1	4213781	4213782	chr1:4213782:T:C	rs10753372	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	4307112	4307113	chr1:4307113:A:G	rs116019360	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	4399559	4399560	chr1:4399560:C:T	rs12043406	C	T	T	Sox1.mouse_HMG_3	11	1	-	5.572274745425204	1.4624343144393066	TAAATACCATTGG
chr1	4588801	4588802	chr1:4588802:C:T	rs549150	C	T	T	Sox1.mouse_HMG_3	1	1	+	5.657008522977176	0.6987362918635482	ACAATTGTATTGC
chr1	5033625	5033626	chr1:5033626:T:C	rs7533014	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	5196498	5196499	chr1:5196499:C:A	rs66644836	C	A	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	5241943	5241944	chr1:5241944:G:C	rs10915389	G	C	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	5530386	5530387	chr1:5530387:T:C	rs9661864	T	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	5671679	5671680	chr1:5671680:A:G	rs77948710	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr1	5755080	5755081	chr1:5755081:A:C	rs61763323	A	C	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	5819970	5819971	chr1:5819971:A:G	rs74051308	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	5938959	5938960	chr1:5938960:T:C	rs11120832	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	5940217	5940218	chr1:5940218:T:C	rs57752624	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.712775352785773	-0.19597942652944722	ACAATGGCATTCA
chr1	5982352	5982353	chr1:5982353:C:T	rs72630649	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	6028303	6028304	chr1:6028304:G:A	rs11121065	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr1	6512210	6512211	chr1:6512211:C:G	rs9787374	C	G	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	6762349	6762350	chr1:6762350:T:A	rs35916265	T	A	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	6954479	6954480	chr1:6954480:C:G	rs12239076	C	G	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	7178454	7178455	chr1:7178455:G:A	rs957787935	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr1	7423164	7423165	chr1:7423165:C:T	rs368180077	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.219028433987919	0.10918800300202047	TCTAAACCATTGA
chr1	7426256	7426257	chr1:7426257:T:C	rs12088178	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr1	7477439	7477440	chr1:7477440:G:A	rs1193182	G	A	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	7829880	7829881	chr1:7829881:C:T	rs2640908	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	7955499	7955500	chr1:7955500:A:G	rs161799	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	8028888	8028889	chr1:8028889:G:A	rs11800783	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr1	8121538	8121539	chr1:8121539:T:C	rs4908731	T	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	8239048	8239049	chr1:8239049:G:A	rs6577475	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	8371202	8371203	chr1:8371203:T:C	rs1249977823	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr1	8424468	8424469	chr1:8424469:A:G	rs57310340	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	8536682	8536683	chr1:8536683:T:G	rs17032657	T	G	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	8541058	8541059	chr1:8541059:A:C	rs12136689	A	C	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	8578606	8578607	chr1:8578607:T:C	rs12029303	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	8660765	8660766	chr1:8660766:T:C	rs17387017	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.3271574140863915	-2.5597520937141165	CCAAAAACATTGA
chr1	9110818	9110819	chr1:9110819:G:A	rs770028	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	9187259	9187260	chr1:9187260:C:A	rs4141449	C	A	a	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	9356091	9356092	chr1:9356092:G:A	rs9435243	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	9437304	9437305	chr1:9437305:C:T	rs9659311	C	T	T	Sox1.mouse_HMG_3	5	1	-	5.144195826422308	6.376868597489397	TCAATGCCACTGC
chr1	9438742	9438743	chr1:9438743:C:T	rs762504428	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	9833314	9833315	chr1:9833315:A:G	rs1660738	A	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	10016152	10016153	chr1:10016153:C:T	rs979830189	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	10083491	10083492	chr1:10083492:T:A	rs79980202	T	A	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	10108020	10108021	chr1:10108021:A:G	rs114515417	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	10339885	10339886	chr1:10339886:A:C	rs12143935	A	C	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	10398425	10398426	chr1:10398426:G:A	rs116341624	G	A	A	Sox1.mouse_HMG_3	8	1	+	4.744400798806634	11.653155578121854	TCAATACCGTTAA
chr1	10420808	10420809	chr1:10420809:C:T	rs12755363	C	T	-	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	10714797	10714798	chr1:10714798:C:T	rs142540941	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	10714798	10714799	chr1:10714799:A:G	rs284247	A	G	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	10858495	10858496	chr1:10858496:T:G	rs111682832	T	G	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	11139091	11139092	chr1:11139092:T:C	rs2275528	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.4389894945908335	-0.19622330121378107	TCACATTCATTGG
chr1	11187780	11187781	chr1:11187781:T:C	rs7555071	T	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	11498143	11498144	chr1:11498144:G:C	rs7537387	G	C	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	11530117	11530118	chr1:11530118:C:T	rs67602684	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	11661891	11661892	chr1:11661892:C:T	rs2294640	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	11857282	11857283	chr1:11857283:C:T	rs198388	C	T	T	Sox1.mouse_HMG_3	1	1	+	6.431029050559083	1.4727568194454563	TCAATAACATTTC
chr1	11908384	11908385	chr1:11908385:G:A	rs369682507	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	11908388	11908389	chr1:11908389:T:C	rs527489760	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	11908391	11908392	chr1:11908392:G:A	rs76892591	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	11908397	11908398	chr1:11908398:A:G	rs1015002471	A	G	A	Sox1.mouse_HMG_3	2	1	+	8.482765119333816	1.574010340018598	TCAATTGTATTGC
chr1	11908402	11908403	chr1:11908403:T:C	rs556216716	T	C	t	Sox1.mouse_HMG_3	7	1	+	8.482765119333816	12.11523261042901	TCAATTGTATTGC
chr1	11908407	11908408	chr1:11908408:C:T	rs927069180	C	T	T	Sox1.mouse_HMG_3	12	1	+	8.482765119333816	8.56854198108052	TCAATTGTATTGC
chr1	11908409	11908410	chr1:11908410:T:C	rs140516253	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	11908417	11908418	chr1:11908418:C:T	rs191029441	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	11908422	11908423	chr1:11908423:A:G	rs540419243	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	11979870	11979871	chr1:11979871:G:C	rs564944035	G	C	g	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	12096178	12096179	chr1:12096179:A:G	rs11121855	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.671448532326048	-0.21546097547445942	TCAATATAATTGG
chr1	12133042	12133043	chr1:12133043:G:A	rs191640872	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	12406092	12406093	chr1:12406093:C:T	rs141028350	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.365113835930794	1.7326463448356002	ACAATTACATGGA
chr1	12670403	12670404	chr1:12670404:G:A	rs1857539	G	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	12697648	12697649	chr1:12697649:T:C	rs3010951	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	12728822	12728823	chr1:12728823:A:T	rs3010891	A	T	T	Sox1.mouse_HMG_3	2	1	+	6.040289972650561	-0.8684648066646585	TCAATAGCATTTT
chr1	13227968	13227969	chr1:13227969:C:T	rs373542647	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	13413247	13413248	chr1:13413248:A:G	rs781649782	A	G	-	Sox1.mouse_HMG_3	2	1	+	5.462074745104003	-1.446680034211218	TCACTTTCATGGA
chr1	13422700	13422701	chr1:13422701:A:G	rs1037900867	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.470310911996005	-2.4384438673192146	TCATTTCCAGTGA
chr1	13422702	13422703	chr1:13422703:T:C	rs899454463	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.470310911996005	-2.4297851096186416	TCATTTCCAGTGA
chr1	13586391	13586392	chr1:13586392:G:A	rs10927903	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.6095240286130785	6.086039968268302	AAAATAGCATTGA
chr1	13665984	13665985	chr1:13665985:A:G	rs10492979	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.633725121504984	-2.275029657810235	TCAATGTCATTTC
chr1	13693271	13693272	chr1:13693272:G:A	rs3001731	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	13769090	13769091	chr1:13769091:T:C	rs41269797	T	C	T	Sox1.mouse_HMG_3	10	1	+	3.553052760442753	-1.0821600353618612	TCACTTCCCTTGT
chr1	13782214	13782215	chr1:13782215:G:T	chr1:13782215:G:T	G	T	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	13782216	13782217	chr1:13782217:C:T	rs61743100	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	13931171	13931172	chr1:13931172:A:G	rs6685990	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	13965814	13965815	chr1:13965815:T:C	rs1997780	T	C	C	Sox1.mouse_HMG_3	10	1	+	5.774772624471591	1.1395598286669775	TGAATTACATTGT
chr1	14014320	14014321	chr1:14014321:A:G	rs1883647	A	G	A	Sox1.mouse_HMG_3	6	1	-	4.609272739797124	5.1223505549075945	TCCATGTCATTGC
chr1	14085310	14085311	chr1:14085311:T:C	rs72861288	T	C	T	Sox1.mouse_HMG_3	10	1	+	8.344819216731393	3.70960642092678	TCAATTTCAGTGT
chr1	14113796	14113797	chr1:14113797:A:G	rs12026570	A	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	14113798	14113799	chr1:14113799:A:T	rs12026571	A	T	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	14129039	14129040	chr1:14129040:T:C	rs4662113	T	C	C	Sox1.mouse_HMG_3	0	1	+	3.4672758986960504	-3.384903243397233	TCACTTCCCTTGC
chr1	14142405	14142406	chr1:14142406:T:C	rs10803463	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	14151448	14151449	chr1:14151449:G:A	rs929125	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	14417475	14417476	chr1:14417476:A:G	rs4573512	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	14815444	14815445	chr1:14815445:G:A	rs76100808	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	14836849	14836850	chr1:14836850:C:T	rs79675220	C	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	14863373	14863374	chr1:14863374:T:C	rs3765383	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	14863380	14863381	chr1:14863381:G:A	rs3765382	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	15186635	15186636	chr1:15186636:A:G	rs12407705	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr1	15356912	15356913	chr1:15356913:T:A	rs11582182	T	A	t	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	15662461	15662462	chr1:15662462:G:A	rs1240333	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	15836978	15836979	chr1:15836979:G:A	rs567791712	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	15950040	15950041	chr1:15950041:A:G	rs11489779	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.5158299849797885	0.7148028230627834	TCAATGACATTCC
chr1	15950057	15950058	chr1:15950058:C:T	rs11489780	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	16723458	16723459	chr1:16723459:C:T	rs16854927	C	T	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	16951616	16951617	chr1:16951617:A:G	rs1810516	A	G	.	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	17097637	17097638	chr1:17097638:T:C	rs2244949	T	C	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	17109901	17109902	chr1:17109902:A:C	rs75867796	A	C	A	Sox1.mouse_HMG_3	5	1	-	5.048886456607226	4.539796583622346	TCACTTACAGTAA
chr1	17194127	17194128	chr1:17194128:G:A	rs74058945	G	A	G	Sox1.mouse_HMG_3	12	1	+	3.9282497846899855	7.2162182610131875	TCAGTGTCATTGG
chr1	17196325	17196326	chr1:17196326:C:T	rs754171	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	17204547	17204548	chr1:17204548:C:G	rs12134684	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	17712064	17712065	chr1:17712065:T:C	rs4920624	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	17923248	17923249	chr1:17923249:C:T	rs12092756	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	18009102	18009103	chr1:18009103:C:G	rs16861410	C	G	C	Sox1.mouse_HMG_3	11	1	-	3.8051759615826692	-0.7616527305368943	TCCATCTCATTGA
chr1	18258108	18258109	chr1:18258109:C:T	rs111681429	C	T	c	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	18448198	18448199	chr1:18448199:A:G	rs2946535	A	G	G	Sox1.mouse_HMG_3	4	1	-	12.116882195969517	5.216786174354869	TCAATGCCATTGT
chr1	18978090	18978091	chr1:18978091:C:T	rs4912157	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	19150154	19150155	chr1:19150155:G:C	rs2296107	G	C	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	19446352	19446353	chr1:19446353:C:T	rs10492998	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	19505574	19505575	chr1:19505575:A:G	rs115908591	A	G	A	Sox1.mouse_HMG_3	12	1	-	5.824944907037393	5.73916804529069	TCATTTCCATTGT
chr1	19715874	19715875	chr1:19715875:C:G	rs149776469	C	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	19736301	19736302	chr1:19736302:G:T	rs192147021	G	T	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	19739886	19739887	chr1:19739887:C:A	rs41303893	C	A	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	19739897	19739898	chr1:19739898:G:T	chr1:19739898:G:T	G	T	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	19876012	19876013	chr1:19876013:A:G	rs72658577	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	19927813	19927814	chr1:19927814:G:A	rs7520018	G	A	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	20069374	20069375	chr1:20069375:G:A	rs528614	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	20239010	20239011	chr1:20239011:T:C	rs74057261	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.4609434493543105	-0.3400837125626943	TCAATTCAATTGG
chr1	20322662	20322663	chr1:20322663:A:G	rs10916765	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	20728294	20728295	chr1:20728295:A:G	rs733581	A	G	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	20733212	20733213	chr1:20733213:C:G	rs78491441	C	G	C	Sox1.mouse_HMG_3	7	1	+	5.38190103252794	-1.497835357936672	TCACTTTCATTCT
chr1	20884481	20884482	chr1:20884482:G:C	rs115762292	G	C	G	Sox1.mouse_HMG_3	11	1	+	4.9661713859332615	0.39934269381369747	TCACTGTCAATGA
chr1	20949939	20949940	chr1:20949940:C:T	rs17417114	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	21177786	21177787	chr1:21177787:G:A	rs74058841	G	A	G	Sox1.mouse_HMG_3	6	1	-	5.22997268816901	4.716894873058539	TCAATGCCACTGT
chr1	21350868	21350869	chr1:21350869:C:T	rs147359089	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	21490871	21490872	chr1:21490872:A:G	rs75824579	A	G	.	Sox1.mouse_HMG_3	3	1	+	8.834279617793582	2.0332524558765743	TCAATAACATTCT
chr1	21490900	21490901	chr1:21490901:A:G	rs72659147	A	G	.	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	21819684	21819685	chr1:21819685:G:T	rs113947818	G	T	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	21914691	21914692	chr1:21914692:G:A	rs78951217	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	22224877	22224878	chr1:22224878:A:G	rs765131	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	22272040	22272041	chr1:22272041:G:A	rs6681709	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr1	22289310	22289311	chr1:22289311:A:G	rs17360519	A	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	22413120	22413121	chr1:22413121:C:A	rs940622265	C	A	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr1	22848485	22848486	chr1:22848486:A:G	rs139231842	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	22848805	22848806	chr1:22848806:G:A	rs55706919	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	23100199	23100200	chr1:23100200:C:T	rs35406425	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	23565859	23565860	chr1:23565860:A:C	rs2811939	A	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	23638318	23638319	chr1:23638319:C:T	rs12760004	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	24023630	24023631	chr1:24023631:C:T	rs77772243	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	24187660	24187661	chr1:24187661:G:A	rs141858161	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	24200237	24200238	chr1:24200238:C:T	rs74621102	C	T	T	Sox1.mouse_HMG_3	11	1	-	3.410766981973477	-0.6990734490124213	TCACTACCATGGG
chr1	24428947	24428948	chr1:24428948:G:A	rs10903087	G	A	G	Sox1.mouse_HMG_3	1	1	-	6.69873545829668	1.740463227183054	TCACTACCATGGA
chr1	24988402	24988403	chr1:24988403:T:C	rs432169	T	C	t	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	24988422	24988423	chr1:24988423:A:G	rs59899669	A	G	A	Sox1.mouse_HMG_3	4	1	+	7.815073189245821	5.550189963435788	TCACATGCATTGA
chr1	25425790	25425791	chr1:25425791:G:A	rs72660931	G	A	g	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	25425796	25425797	chr1:25425797:A:C	rs72660932	A	C	a	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	25553424	25553425	chr1:25553425:G:A	rs74693812	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	25647028	25647029	chr1:25647029:A:G	rs74062322	A	G	A	Sox1.mouse_HMG_3	3	1	+	9.156517333145386	2.355490171228382	TCAATAGCAGTGT
chr1	25826174	25826175	chr1:25826175:T:C	rs6598923	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr1	26077499	26077500	chr1:26077500:C:T	rs3008233	C	T	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	26170395	26170396	chr1:26170396:C:T	rs2232655	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	26619220	26619221	chr1:26619221:T:C	rs4970480	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	26683084	26683085	chr1:26683085:C:G	rs545928755	C	G	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	26749815	26749816	chr1:26749816:G:A	rs551793788	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	27518780	27518781	chr1:27518781:C:T	rs867739186	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	28236164	28236165	chr1:28236165:A:G	rs12154	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	28737520	28737521	chr1:28737521:T:C	chr1:28737521:T:C	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	28737523	28737524	chr1:28737524:C:T	rs61787567	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	29181737	29181738	chr1:29181738:G:A	rs200383319	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	29254577	29254578	chr1:29254578:C:G	rs16838061	C	G	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	29298862	29298863	chr1:29298863:G:A	rs9426315	G	A	A	Sox1.mouse_HMG_3	6	1	-	4.333211295746898	3.8201334806364264	GCACTACCATTGT
chr1	29423742	29423743	chr1:29423743:A:G	rs1408863	A	G	G	Sox1.mouse_HMG_3	3	1	+	8.842560041689355	2.0415328797723515	TCAATACTATTGG
chr1	29882002	29882003	chr1:29882003:C:A	rs12039019	C	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	29895539	29895540	chr1:29895540:T:C	rs1550968	T	C	T	Sox1.mouse_HMG_3	5	1	-	8.203602712706603	6.970929941639515	TCAAAAGCATTGC
chr1	29920122	29920123	chr1:29920123:C:T	rs12401689	C	T	C	Sox1.mouse_HMG_3	6	1	-	5.712899490971386	6.1894154306266085	ACACAAGCATTGA
chr1	30015164	30015165	chr1:30015165:A:G	rs428294	A	G	G	Sox1.mouse_HMG_3	0	1	+	5.82747103938571	1.8010484936490676	ACACTGGCATTGG
chr1	30051075	30051076	chr1:30051076:G:A	rs1503772	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	30185236	30185237	chr1:30185237:T:C	rs7536179	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	30220468	30220469	chr1:30220469:G:A	rs13374985	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	30255520	30255521	chr1:30255521:T:G	rs6425919	T	G	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr1	30412362	30412363	chr1:30412363:C:T	rs650676	C	T	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	30464698	30464699	chr1:30464699:C:T	rs148658581	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	30464704	30464705	chr1:30464705:T:C	rs262594	T	C	t	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	30599636	30599637	chr1:30599637:C:T	rs1408150	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	30695919	30695920	chr1:30695920:C:T	rs12119696	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	30705975	30705976	chr1:30705976:C:T	rs12726734	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	30727030	30727031	chr1:30727031:A:T	rs12404046	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr1	30755798	30755799	chr1:30755799:G:A	rs56126824	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	31155772	31155773	chr1:31155773:A:C	rs111419304	A	C	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	31203359	31203360	chr1:31203360:C:T	rs61778328	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	31329676	31329677	chr1:31329677:G:A	rs12027502	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	31386053	31386054	chr1:31386054:T:C	rs12122236	T	C	C	Sox1.mouse_HMG_3	2	1	-	3.864320104239465	-3.044434675075754	ACACTACCTTTGA
chr1	31507536	31507537	chr1:31507537:T:C	rs56235358	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	31532563	31532564	chr1:31532564:G:A	rs114625793	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	31538052	31538053	chr1:31538053:C:T	rs74063780	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	31578204	31578205	chr1:31578205:G:A	rs114434987	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	31930401	31930402	chr1:31930402:C:T	rs12739816	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	32015055	32015056	chr1:32015056:G:A	rs640991	G	A	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	32063463	32063464	chr1:32063464:A:G	rs72878639	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	32199264	32199265	chr1:32199265:A:G	rs16834926	A	G	G	Sox1.mouse_HMG_3	6	1	-	4.804427055858008	5.317504870968479	TCACAGTCATTGT
chr1	32442213	32442214	chr1:32442214:T:C	rs72883985	T	C	t	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	33099397	33099398	chr1:33099398:G:A	chr1:33099398:G:A	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	33099447	33099448	chr1:33099448:C:T	rs139284975	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	33151746	33151747	chr1:33151747:A:G	rs7545367	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	33337546	33337547	chr1:33337547:C:T	rs12138864	C	T	T	Sox1.mouse_HMG_3	9	1	-	3.962870875927092	0.8440364052391176	TCACAGCCAGTGA
chr1	33337569	33337570	chr1:33337570:C:T	rs6696096	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	33682399	33682400	chr1:33682400:A:G	rs12410647	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	33719070	33719071	chr1:33719071:A:G	rs114322616	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	33828223	33828224	chr1:33828224:C:T	rs1570090	C	T	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	33973279	33973280	chr1:33973280:G:A	rs502199	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	34408799	34408800	chr1:34408800:T:C	rs10914940	T	C	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	34519857	34519858	chr1:34519858:A:G	rs3845485	A	G	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	34692105	34692106	chr1:34692106:T:C	rs76893325	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.223560531469602	-2.6765354901450467	ACAATGGCAGTGG
chr1	34842989	34842990	chr1:34842990:A:G	rs11577735	A	G	A	Sox1.mouse_HMG_3	3	1	-	3.9282497846899855	8.565112417410564	TCATTGTCATTGG
chr1	35182890	35182891	chr1:35182891:G:A	rs41267245	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	35881972	35881973	chr1:35881973:A:G	rs11584005	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	36135171	36135172	chr1:36135172:A:C	rs11577123	A	C	A	Sox1.mouse_HMG_3	8	1	+	4.393812082979352	-2.5149426963358685	TCAATGACATGGG
chr1	36168462	36168463	chr1:36168463:A:C	rs74066060	A	C	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	36385901	36385902	chr1:36385902:C:T	rs557673569	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	36385902	36385903	chr1:36385903:G:T	rs1408575708	G	T	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	36671597	36671598	chr1:36671598:C:T	rs219012	C	T	T	Sox1.mouse_HMG_3	6	1	+	8.130658331710324	7.617580516599853	TCAATTCCTTTGA
chr1	36916063	36916064	chr1:36916064:G:A	rs112783139	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	37038292	37038293	chr1:37038293:C:G	rs374371027	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	37038299	37038300	chr1:37038300:A:G	rs528275016	A	G	A	Sox1.mouse_HMG_3	0	1	+	4.208214325760499	0.18179178002385687	ACAATCGCAGTGA
chr1	37513171	37513172	chr1:37513172:T:C	rs4653296	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.532007081781716	-1.269020080135291	ACAATAGCATTCT
chr1	37595485	37595486	chr1:37595486:C:T	rs150554077	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	37809180	37809181	chr1:37809181:T:G	rs759366752	T	G	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	38221387	38221388	chr1:38221388:T:C	rs6685558	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr1	38291564	38291565	chr1:38291565:G:A	rs2637869	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	38483630	38483631	chr1:38483631:T:C	rs34219417	T	C	T	Sox1.mouse_HMG_3	12	1	-	4.4719607489119735	1.1839922725887706	TCACATCCAGTGA
chr1	38483870	38483871	chr1:38483871:C:T	rs72669246	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	38611427	38611428	chr1:38611428:G:A	rs1925382	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	38677383	38677384	chr1:38677384:T:C	rs11585248	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	38874609	38874610	chr1:38874610:C:T	rs880303	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	40186486	40186487	chr1:40186487:G:A	rs61780445	G	A	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	40397158	40397159	chr1:40397159:G:A	rs209598	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	40400615	40400616	chr1:40400616:C:T	rs2982508	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.5215999969065779	TCCATTCCATTGC
chr1	40433465	40433466	chr1:40433466:T:C	rs12118997	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	40557838	40557839	chr1:40557839:A:G	rs10889472	A	G	G	Sox1.mouse_HMG_3	0	1	-	4.8751495161281415	-1.9770296259651423	TCACTGGCATTCC
chr1	40564791	40564792	chr1:40564792:A:G	rs17403513	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	40663324	40663325	chr1:40663325:C:T	rs500789	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr1	40701861	40701862	chr1:40701862:A:G	rs569159	A	G	G	Sox1.mouse_HMG_3	9	1	-	3.5041042936062827	-3.382805214194225	TCAACTCCATCGA
chr1	40754723	40754724	chr1:40754724:G:A	rs2885328	G	A	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	40857891	40857892	chr1:40857892:G:A	rs12075561	G	A	G	Sox1.mouse_HMG_3	9	1	+	4.4719607489119735	1.3531262782239983	TCACATCCAGTGA
chr1	40876039	40876040	chr1:40876040:G:A	rs140672716	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	40940076	40940077	chr1:40940077:G:A	rs12410427	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	41293826	41293827	chr1:41293827:C:A	rs60552457	C	A	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	41388544	41388545	chr1:41388545:C:T	rs2886109	C	T	C	Sox1.mouse_HMG_3	7	1	+	8.854241229792532	5.221773738697339	TCAATACCGTTGA
chr1	41491386	41491387	chr1:41491387:G:A	rs6679724	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	41572203	41572204	chr1:41572204:T:C	rs4509569	T	C	T	Sox1.mouse_HMG_3	12	1	+	4.946267134119459	4.860490272372756	TCAAAACCAGTGT
chr1	41614041	41614042	chr1:41614042:G:A	rs150118536	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	41614051	41614052	chr1:41614052:G:A	rs116211577	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	41914134	41914135	chr1:41914135:T:A	rs72965235	T	A	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	42659029	42659030	chr1:42659030:A:G	rs6600419	A	G	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	42706150	42706151	chr1:42706151:T:C	rs6663618	T	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	43009912	43009913	chr1:43009913:C:T	rs2643016	C	T	c	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	43217940	43217941	chr1:43217941:C:T	rs17391130	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	43271270	43271271	chr1:43271271:C:T	rs79825075	C	T	c	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	44153179	44153180	chr1:44153180:G:A	rs142568123	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr1	44318619	44318620	chr1:44318620:C:T	rs4356094	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr1	44458778	44458779	chr1:44458779:G:A	rs12057674	G	A	A	Sox1.mouse_HMG_3	9	1	+	4.6847302654157215	1.5658957947277472	ACAATCACAGTGA
chr1	44467950	44467951	chr1:44467951:G:A	rs114626863	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	44653319	44653320	chr1:44653320:A:G	rs71653921	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.448891032080276	1.561981524279768	TCAGTATCATTGA
chr1	44729068	44729069	chr1:44729069:C:G	rs11580159	C	G	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	44729100	44729101	chr1:44729101:G:C	rs56147651	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	44775233	44775234	chr1:44775234:C:G	rs114577765	C	G	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr1	45537454	45537455	chr1:45537455:T:A	rs2934861	T	A	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	46302179	46302180	chr1:46302180:C:A	rs375550246	C	A	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	46302203	46302204	chr1:46302204:A:G	rs563663849	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	46481495	46481496	chr1:46481496:G:A	rs6679041	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	46534282	46534283	chr1:46534283:T:C	rs61783087	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	46715077	46715078	chr1:46715078:G:C	rs12078635	G	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	46817832	46817833	chr1:46817833:G:T	rs4646495	G	T	t	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	47046870	47046871	chr1:47046871:T:C	rs79113880	T	C	T	Sox1.mouse_HMG_3	12	1	+	3.5530527604427538	3.4672758986960512	TCTCTTCCATTGT
chr1	47105191	47105192	chr1:47105192:G:A	rs35722586	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	47193772	47193773	chr1:47193773:T:C	rs7545034	T	C	T	Sox1.mouse_HMG_3	1	1	+	7.792428059065806	12.750700290179433	TTAATATCATTGC
chr1	47227704	47227705	chr1:47227705:T:C	rs2250495	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	47484459	47484460	chr1:47484460:A:G	rs10789510	A	G	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	47515850	47515851	chr1:47515851:T:C	rs11585530	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr1	47575933	47575934	chr1:47575934:T:G	rs2457050	T	G	G	Sox1.mouse_HMG_3	2	1	-	4.589095543844609	-2.3196592354706125	ACAAAAGCATTGG
chr1	47994234	47994235	chr1:47994235:C:T	rs3814006	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	48208018	48208019	chr1:48208019:A:G	rs535295	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	48806570	48806571	chr1:48806571:A:C	rs17104909	A	C	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	48916834	48916835	chr1:48916835:G:A	rs10430111	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	48953642	48953643	chr1:48953643:A:G	rs10788902	A	G	G	Sox1.mouse_HMG_3	4	1	-	5.475261258918142	-1.4248347626965052	TCACTTTCACTGA
chr1	49306779	49306780	chr1:49306780:A:T	rs241473	A	T	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	50175983	50175984	chr1:50175984:G:A	rs78331461	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	51261266	51261267	chr1:51261267:T:G	rs34653975	T	G	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	51512692	51512693	chr1:51512693:A:G	rs74082612	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	51661103	51661104	chr1:51661104:C:A	rs72898008	C	A	.	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr1	52002752	52002753	chr1:52002753:G:C	rs72905964	G	C	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	52112069	52112070	chr1:52112070:T:G	rs72909945	T	G	t	Sox1.mouse_HMG_3	0	1	-	8.497134820432906	4.470712274696265	ACAATTACAGTGA
chr1	52748209	52748210	chr1:52748210:C:T	rs9988469	C	T	c	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	52748211	52748212	chr1:52748212:T:C	rs9988539	T	C	c	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	52751869	52751870	chr1:52751870:C:A	rs12081018	C	A	c	Sox1.mouse_HMG_3	11	1	-	7.546869065084483	0.6625666674771238	TCAAAAATATTGA
chr1	53110919	53110920	chr1:53110920:T:C	rs1288371	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.016365003021772	-2.8923897762934505	TCAGTGGCATTGG
chr1	53179294	53179295	chr1:53179295:C:T	rs6588471	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr1	53183843	53183844	chr1:53183844:A:G	rs6668221	A	G	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	53348288	53348289	chr1:53348289:T:C	rs10888781	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	53348300	53348301	chr1:53348301:A:G	rs10888782	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	53547788	53547789	chr1:53547789:G:C	rs2316193	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	53547791	53547792	chr1:53547792:C:T	rs2316194	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	53562757	53562758	chr1:53562758:G:C	rs494082	G	C	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	53602342	53602343	chr1:53602343:C:T	rs4927012	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	53890195	53890196	chr1:53890196:A:G	rs6588495	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	54051650	54051651	chr1:54051651:A:G	rs10489446	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	54437056	54437057	chr1:54437057:C:T	rs937764699	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	54611960	54611961	chr1:54611961:G:A	rs72641105	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	54819080	54819081	chr1:54819081:C:A	rs36082067	C	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	54880032	54880033	chr1:54880033:C:A	rs12042996	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr1	54926794	54926795	chr1:54926795:T:C	rs67281988	T	C	C	Sox1.mouse_HMG_3	12	1	+	7.126961070416451	7.041184208669748	ACACTGCCATTGT
chr1	54927616	54927617	chr1:54927617:T:C	rs940831017	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	55189143	55189144	chr1:55189144:T:C	rs75595726	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.646827822549339	0.7599183147488309	ACAATTCCATTCA
chr1	55211370	55211371	chr1:55211371:T:C	rs1874773	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr1	55334096	55334097	chr1:55334097:C:T	rs207164	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	55353153	55353154	chr1:55353154:T:C	rs60396564	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	55353187	55353188	chr1:55353188:T:C	rs207122	T	C	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	55474695	55474696	chr1:55474696:A:G	rs1392141	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	55623809	55623810	chr1:55623810:T:C	rs61776377	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	55671059	55671060	chr1:55671060:G:A	rs67405784	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	56024401	56024402	chr1:56024402:A:C	rs7355032	A	C	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	56137841	56137842	chr1:56137842:T:A	rs77759064	T	A	T	Sox1.mouse_HMG_3	12	1	-	6.265114103817423	3.851673061746276	TCTCTAGCATTGA
chr1	56304700	56304701	chr1:56304701:C:A	rs11206781	C	A	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	56345894	56345895	chr1:56345895:T:C	rs7529732	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	56345905	56345906	chr1:56345906:T:C	rs7529741	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	56517106	56517107	chr1:56517107:G:A	rs76009934	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	56526743	56526744	chr1:56526744:A:G	rs6690245	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.615274731753001	-2.2848212898616476	TAAATGTCATTGC
chr1	56678312	56678313	chr1:56678313:A:G	rs2796498	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	56799844	56799845	chr1:56799845:T:C	rs1935556	T	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	56883733	56883734	chr1:56883734:A:T	rs6694643	A	T	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	57250337	57250338	chr1:57250338:A:G	rs488405	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.927722372610916	-0.9810324067043055	TCAATATCTTTGT
chr1	57307416	57307417	chr1:57307417:C:G	rs17115580	C	G	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	57362872	57362873	chr1:57362873:C:T	rs10889039	C	T	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	57385044	57385045	chr1:57385045:A:C	rs11805025	A	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	57385062	57385063	chr1:57385063:A:G	rs17115713	A	G	A	Sox1.mouse_HMG_3	6	1	-	4.680815994967743	5.1938938100782135	TCATTATCAGTGA
chr1	57451088	57451089	chr1:57451089:A:C	rs17115795	A	C	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	57711330	57711331	chr1:57711331:C:T	rs1323815	C	T	T	Sox1.mouse_HMG_3	6	1	+	5.842877235787196	5.329799420676723	TCACTGCCATTAT
chr1	57719444	57719445	chr1:57719445:G:A	rs68107934	G	A	A	Sox1.mouse_HMG_3	9	1	-	5.537252089840132	12.424161597640637	ACAATATCACTGA
chr1	57761522	57761523	chr1:57761523:C:T	rs3131741	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	58089451	58089452	chr1:58089452:A:T	rs11207170	A	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	58436815	58436816	chr1:58436816:T:C	rs706428	T	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	58574008	58574009	chr1:58574009:T:C	rs78279871	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	58595022	58595023	chr1:58595023:G:A	rs11582691	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	58774315	58774316	chr1:58774316:A:G	rs33989940	A	G	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	58891153	58891154	chr1:58891154:T:C	rs6661505	T	C	C	Sox1.mouse_HMG_3	5	1	-	5.574931511169902	4.342258740102814	TCAAGACCATTGG
chr1	59126583	59126584	chr1:59126584:G:A	rs632986	G	A	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	59180453	59180454	chr1:59180454:T:C	rs6681830	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	59181378	59181379	chr1:59181379:C:T	rs78147819	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr1	59689817	59689818	chr1:59689818:G:A	rs72666283	G	A	G	Sox1.mouse_HMG_3	12	1	-	12.082658677099351	12.168435538846055	TCAATGACATTGC
chr1	59689847	59689848	chr1:59689848:A:G	rs11580721	A	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	59764830	59764831	chr1:59764831:G:A	rs4350232	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	59917492	59917493	chr1:59917493:G:A	rs916735400	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	60825802	60825803	chr1:60825803:C:A	rs111357420	C	A	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	60917601	60917602	chr1:60917602:G:A	rs10889202	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	61247245	61247246	chr1:61247246:T:C	rs333166	T	C	T	Sox1.mouse_HMG_3	3	1	-	9.538531949142415	2.73750478722541	TCAATGGCATTCA
chr1	61448358	61448359	chr1:61448359:G:A	rs79940514	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	61659419	61659420	chr1:61659420:A:T	rs12123270	A	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	61725602	61725603	chr1:61725603:C:T	rs2051137	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	61741581	61741582	chr1:61741582:A:G	rs7551399	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	62272531	62272532	chr1:62272532:C:T	rs55812433	C	T	C	Sox1.mouse_HMG_3	6	1	-	5.399982310258707	5.876498249913929	TCATTTGCATTGT
chr1	62287390	62287391	chr1:62287391:T:C	rs2765254	T	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	62405411	62405412	chr1:62405412:G:A	rs12747317	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	62405418	62405419	chr1:62405419:C:T	rs182989045	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	62405428	62405429	chr1:62405429:A:G	rs10889329	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.2317280092217775	-1.677026770093444	TCACTGCCATCGC
chr1	62434235	62434236	chr1:62434236:T:C	rs610248	T	C	C	Sox1.mouse_HMG_3	6	1	+	5.927722372610916	6.440800187721386	TCAATATCTTTGT
chr1	62785123	62785124	chr1:62785124:C:T	rs148318261	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	63036002	63036003	chr1:63036003:A:G	rs115243257	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.061853696059433	-1.8250558117410758	TCAATATCATAGG
chr1	63036007	63036008	chr1:63036008:A:G	rs116670340	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.061853696059433	-1.8382423255552165	TCAATATCATAGG
chr1	63590739	63590740	chr1:63590740:C:A	rs11208250	C	A	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	63628939	63628940	chr1:63628940:A:T	rs10489613	A	T	A	Sox1.mouse_HMG_3	3	1	+	5.273327081573877	-1.5277000803431284	TCAATAATCTTGA
chr1	63796887	63796888	chr1:63796888:C:T	rs2220894	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.949673128262427	6.035449990009129	TCAGTATCATTGC
chr1	64042136	64042137	chr1:64042137:G:A	rs918983616	G	A	G	Sox1.mouse_HMG_3	1	1	-	4.215311178486118	-0.7429610526275066	TCACTACCATTTC
chr1	64196740	64196741	chr1:64196741:A:G	rs12731793	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.384764638623434	-2.5239901406917866	GCACTAACATTGT
chr1	64506219	64506220	chr1:64506220:T:C	rs4915981	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	64598261	64598262	chr1:64598262:G:A	rs151135115	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr1	64911476	64911477	chr1:64911477:G:A	rs61784740	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	64923410	64923411	chr1:64923411:C:T	rs17397653	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	65190336	65190337	chr1:65190337:C:A	rs6691933	C	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	65394226	65394227	chr1:65394227:C:G	rs7555604	C	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	65633754	65633755	chr1:65633755:C:G	rs3206172	C	G	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	65818052	65818053	chr1:65818053:C:T	rs4259616	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	65847113	65847114	chr1:65847114:A:G	rs4133072	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	66181060	66181061	chr1:66181061:C:T	rs147257739	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	66181096	66181097	chr1:66181097:C:A	rs782329	C	A	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	66371597	66371598	chr1:66371598:C:T	rs150971744	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr1	66477006	66477007	chr1:66477007:A:G	rs699248	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.62358250855573	0.7366730007552216	TAAATTTCATTGA
chr1	66669416	66669417	chr1:66669417:G:A	rs7536634	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	67001489	67001490	chr1:67001490:C:G	rs76609130	C	G	C	Sox1.mouse_HMG_3	1	1	+	12.926801924705657	6.024049137346314	TCACTTACATTGA
chr1	67282078	67282079	chr1:67282079:A:G	rs11209035	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	67462017	67462018	chr1:67462018:G:A	rs12136231	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	67462026	67462027	chr1:67462027:A:G	rs10458560	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	67597706	67597707	chr1:67597707:G:C	rs55747525	G	C	G	Sox1.mouse_HMG_3	1	1	-	6.414207735650361	-0.48854505170898355	TCAATAAAATTAA
chr1	67840565	67840566	chr1:67840566:G:A	rs72924777	G	A	G	Sox1.mouse_HMG_3	3	1	-	3.7745549577001456	-0.8623076750204344	TCACCAGCATTGC
chr1	67889965	67889966	chr1:67889966:T:C	rs4548410	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	68111865	68111866	chr1:68111866:A:G	rs142843721	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.758990800124447	-2.1279187076760606	ACACTTCAATTGA
chr1	68155078	68155079	chr1:68155079:G:A	rs3762371	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	68346436	68346437	chr1:68346437:G:T	rs35399029	G	T	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	68453573	68453574	chr1:68453574:G:A	rs3118429	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	68501775	68501776	chr1:68501776:C:G	rs11587365	C	G	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	68847144	68847145	chr1:68847145:G:T	rs1388653	G	T	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	68918834	68918835	chr1:68918835:G:C	rs4420133	G	C	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	69321800	69321801	chr1:69321801:C:T	rs2815468	C	T	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	69649829	69649830	chr1:69649830:G:A	rs76696215	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	70297650	70297651	chr1:70297651:C:G	rs138692440	C	G	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	70375658	70375659	chr1:70375659:A:G	rs60469831	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.647870506330504	-0.15315665558650138	TTAATGGCATTGC
chr1	70460152	70460153	chr1:70460153:G:C	rs74085265	G	C	G	Sox1.mouse_HMG_3	11	1	-	5.470016250859725	10.036844942979288	TCACTTGCATTCT
chr1	70891153	70891154	chr1:70891154:C:T	rs4650093	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	71033474	71033475	chr1:71033475:C:T	rs2300178	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	71719532	71719533	chr1:71719533:G:T	rs11209830	G	T	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	72284917	72284918	chr1:72284918:A:C	rs12090068	A	C	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	72616787	72616788	chr1:72616788:T:C	rs12408420	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	72624660	72624661	chr1:72624661:A:C	rs4255334	A	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	73593645	73593646	chr1:73593646:T:C	rs12746555	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	73593646	73593647	chr1:73593647:G:A	rs12726518	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	73710422	73710423	chr1:73710423:A:G	rs17515948	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.150156637458316	-0.7367528703421913	ACACTATCATTAA
chr1	73759011	73759012	chr1:73759012:G:A	chr1:73759012:G:A	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	73860694	73860695	chr1:73860695:G:A	rs17578595	G	A	A	Sox1.mouse_HMG_3	7	1	-	4.669862353601886	1.0373948625066947	TCAATAGCAGAGA
chr1	73860701	73860702	chr1:73860702:A:G	rs182086504	A	G	A	Sox1.mouse_HMG_3	0	1	-	4.669862353601886	-2.182316788491398	TCAATAGCAGAGA
chr1	73910618	73910619	chr1:73910619:A:G	chr1:73910619:A:G	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	74734556	74734557	chr1:74734557:A:G	rs75976196	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	74748508	74748509	chr1:74748509:G:T	rs2345438	G	T	G	Sox1.mouse_HMG_3	1	1	-	5.247096989870718	-1.6556557974886252	TCACAAACAGTGA
chr1	75137944	75137945	chr1:75137945:T:C	rs12036667	T	C	T	Sox1.mouse_HMG_3	5	1	-	5.612180794357776	4.37950802329069	ACAACAGCATTGA
chr1	75137948	75137949	chr1:75137949:G:T	rs7535534	G	T	G	Sox1.mouse_HMG_3	1	1	-	5.612180794357776	-1.2905719930015684	ACAACAGCATTGA
chr1	75248868	75248869	chr1:75248869:T:C	rs649352	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	75264322	75264323	chr1:75264323:T:A	rs79331054	T	A	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	75264329	75264330	chr1:75264330:G:A	rs79689913	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	75392332	75392333	chr1:75392333:T:C	rs1249822	T	C	C	Sox1.mouse_HMG_3	4	1	+	8.103816083683004	1.2037200620683564	ACAATTCCATTAA
chr1	76038952	76038953	chr1:76038953:G:C	rs7513692	G	C	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	76095846	76095847	chr1:76095847:G:A	rs289678	G	A	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	76227681	76227682	chr1:76227682:C:T	rs10493588	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	76234302	76234303	chr1:76234303:C:G	rs960582936	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	76388635	76388636	chr1:76388636:T:G	rs10873883	T	G	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	76430087	76430088	chr1:76430088:G:C	rs4565767	G	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	76741645	76741646	chr1:76741646:C:T	rs7515698	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	76770553	76770554	chr1:76770554:C:G	rs3862898	C	G	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	76995402	76995403	chr1:76995403:A:G	rs17099802	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	77067799	77067800	chr1:77067800:G:A	rs72681867	G	A	G	Sox1.mouse_HMG_3	10	1	-	5.247096989870718	9.882309785675332	TCACTAACAGCGA
chr1	77303792	77303793	chr1:77303793:G:C	rs1670612	G	C	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	77303804	77303805	chr1:77303805:T:C	rs2799561	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	77343214	77343215	chr1:77343215:G:A	rs12125503	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	77650717	77650718	chr1:77650718:A:G	rs278837	A	G	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	78171194	78171195	chr1:78171195:A:T	rs942099	A	T	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	78283721	78283722	chr1:78283722:A:G	rs1953956	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.674401733567803	-1.2256942880468438	GCAATAACATTGG
chr1	78340250	78340251	chr1:78340251:C:T	rs111318827	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	78660358	78660359	chr1:78660359:C:T	rs2296717	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr1	78758419	78758420	chr1:78758420:G:A	rs17400982	G	A	g	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	78760383	78760384	chr1:78760384:G:A	rs72673998	G	A	g	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	78938065	78938066	chr1:78938066:T:G	rs985277	T	G	T	Sox1.mouse_HMG_3	0	1	+	11.458498962806887	4.606319820713605	TCAATTATATTGA
chr1	79575563	79575564	chr1:79575564:G:T	rs116666196	G	T	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	79777635	79777636	chr1:79777636:C:T	rs55658731	C	T	c	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	79777636	79777637	chr1:79777637:T:G	rs55800905	T	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	79830912	79830913	chr1:79830913:T:C	rs12143037	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	79983116	79983117	chr1:79983117:T:C	rs12124992	T	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr1	80536341	80536342	chr1:80536342:A:G	rs117214382	A	G	A	Sox1.mouse_HMG_3	8	1	+	7.507610271916191	0.5988554926009702	TCAATATTATTAA
chr1	80776377	80776378	chr1:80776378:A:T	rs6664492	A	T	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	80989067	80989068	chr1:80989068:C:G	rs2892682	C	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr1	81314007	81314008	chr1:81314008:G:T	rs17106395	G	T	G	Sox1.mouse_HMG_3	1	1	-	4.557335285500841	-2.3454175018585044	ACACTAACAGTGC
chr1	81314018	81314019	chr1:81314019:G:A	rs6669537	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	81315258	81315259	chr1:81315259:A:G	rs17106399	A	G	A	Sox1.mouse_HMG_3	2	1	+	9.136193121317435	2.2274383420022157	ACAATATCATTGG
chr1	81352133	81352134	chr1:81352134:C:T	rs67706057	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	81408183	81408184	chr1:81408184:A:G	rs11808193	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	81547950	81547951	chr1:81547951:T:C	rs1039072173	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	82109114	82109115	chr1:82109115:T:G	rs4970668	T	G	T	Sox1.mouse_HMG_3	12	1	-	9.9634945459211	7.4642766421032505	TCAATGCCATTCA
chr1	82262283	82262284	chr1:82262284:G:A	rs11163451	G	A	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr1	82306631	82306632	chr1:82306632:C:T	rs7413734	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	82443412	82443413	chr1:82443413:T:C	rs72709829	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	82502554	82502555	chr1:82502555:C:G	rs7544706	C	G	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	82755262	82755263	chr1:82755263:C:T	rs320916	C	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	82977919	82977920	chr1:82977920:A:T	rs72711212	A	T	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	83031876	83031877	chr1:83031877:G:C	rs12742527	G	C	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	83056318	83056319	chr1:83056319:T:C	rs74622747	T	C	t	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	83087339	83087340	chr1:83087340:A:C	rs12740512	A	C	A	Sox1.mouse_HMG_3	3	1	-	4.016365003021772	4.016365003021772	TCATTGGCATTGG
chr1	83748171	83748172	chr1:83748172:G:A	rs12724410	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	83827429	83827430	chr1:83827430:C:T	rs12135529	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	83849598	83849599	chr1:83849599:T:C	rs188785817	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.417024494377285	-0.4917302849379357	ACACTTCTATTGA
chr1	83962023	83962024	chr1:83962024:G:C	rs942848	G	C	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	83963280	83963281	chr1:83963281:A:G	rs80258885	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	83997444	83997445	chr1:83997445:G:A	rs558567	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	84124836	84124837	chr1:84124837:T:G	rs185867313	T	G	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	84124843	84124844	chr1:84124844:A:G	rs2139931	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.797825912199086	-2.0890835956014215	AAAATTTCATTGA
chr1	84165201	84165202	chr1:84165202:G:A	rs2642182	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr1	84171666	84171667	chr1:84171667:A:G	rs61360062	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	84223916	84223917	chr1:84223917:T:C	rs639010	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.142773097235388	-1.7441364105651194	ATACTTACATTGA
chr1	84225643	84225644	chr1:84225644:A:G	rs11163916	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	84433503	84433504	chr1:84433504:C:A	chr1:84433504:C:A	C	A	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	84520355	84520356	chr1:84520356:C:T	rs925740	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	84757792	84757793	chr1:84757793:G:A	rs12733380	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	85229970	85229971	chr1:85229971:T:C	rs2153528	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	85317417	85317418	chr1:85317418:T:C	rs233109	T	C	C	Sox1.mouse_HMG_3	9	1	-	5.054286604265046	8.173121074953022	TCACTGGCAATGA
chr1	85372821	85372822	chr1:85372822:T:G	rs140056707	T	G	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr1	85709485	85709486	chr1:85709486:C:A	rs114234200	C	A	C	Sox1.mouse_HMG_3	7	1	+	6.412578660807096	1.1220774754590654	TGAATAACATTGC
chr1	86417265	86417266	chr1:86417266:T:C	rs78584928	T	C	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr1	86788430	86788431	chr1:86788431:G:A	rs369220391	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	87045136	87045137	chr1:87045137:A:G	rs142472058	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	87219548	87219549	chr1:87219549:G:A	rs11804752	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	87451080	87451081	chr1:87451081:C:G	rs1005409567	C	G	C	Sox1.mouse_HMG_3	1	1	-	5.637442419848352	12.540195207207693	TGAATTCCATTGC
chr1	87678460	87678461	chr1:87678461:T:C	rs142143873	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr1	87687022	87687023	chr1:87687023:C:G	rs115788217	C	G	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	87817023	87817024	chr1:87817024:C:T	rs2436980	C	T	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	88276296	88276297	chr1:88276297:C:T	rs115590681	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	88477430	88477431	chr1:88477431:C:T	rs4656045	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	88502107	88502108	chr1:88502108:G:C	rs387972	G	C	c	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	88803160	88803161	chr1:88803161:C:T	rs149057939	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	88884340	88884341	chr1:88884341:G:C	rs56035308	G	C	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	89128991	89128992	chr1:89128992:A:T	rs115705250	A	T	T	Sox1.mouse_HMG_3	9	1	-	9.948729724647503	3.061820216846995	TCACTTTCATTGT
chr1	89165912	89165913	chr1:89165913:C:T	rs590617	C	T	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	89304751	89304752	chr1:89304752:C:A	rs4658355	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	89451240	89451241	chr1:89451241:C:G	rs116753466	C	G	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	89524126	89524127	chr1:89524127:T:C	rs1051151384	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.622848390691265	-1.2859063886239557	CCAATACCATTGG
chr1	89524129	89524130	chr1:89524130:T:A	rs190484433	T	A	T	Sox1.mouse_HMG_3	5	1	-	5.622848390691265	4.899265492609057	CCAATACCATTGG
chr1	89524151	89524152	chr1:89524152:T:G	chr1:89524152:T:G	T	G	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	89843840	89843841	chr1:89843841:C:G	rs143417450	C	G	C	Sox1.mouse_HMG_3	9	1	-	4.080819345845619	0.9619848751576439	ACACTAGCAGTGC
chr1	90067207	90067208	chr1:90067208:C:T	rs7542860	C	T	T	Sox1.mouse_HMG_3	11	1	-	4.190858796778258	0.08101836579236021	TCACTACCCTTGC
chr1	90347649	90347650	chr1:90347650:T:C	rs951889200	T	C	T	Sox1.mouse_HMG_3	9	1	+	3.8711086985948557	-3.015800809205652	TCAAGAGCATTCA
chr1	90764051	90764052	chr1:90764052:G:A	rs60908826	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	90876544	90876545	chr1:90876545:G:A	rs12021878	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	91136608	91136609	chr1:91136609:A:G	rs346991	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	91744966	91744967	chr1:91744967:C:A	rs143662767	C	A	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	91901490	91901491	chr1:91901491:G:A	rs528338535	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr1	92854844	92854845	chr1:92854845:A:T	rs11164827	A	T	A	Sox1.mouse_HMG_3	3	1	+	4.386187677498587	-2.414839484418419	GCAATTTCATTGG
chr1	93276261	93276262	chr1:93276262:A:G	rs139026830	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.023069439735837	-0.8856853395793842	GCACTTCCATTGA
chr1	93281308	93281309	chr1:93281309:T:C	rs11164888	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	93329608	93329609	chr1:93329609:A:T	rs2391254	A	T	A	Sox1.mouse_HMG_3	6	1	-	5.815103262836891	6.379734420823899	ACAATATCATTAC
chr1	93347872	93347873	chr1:93347873:T:C	rs771464	T	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	93444329	93444330	chr1:93444330:C:A	rs2391271	C	A	C	Sox1.mouse_HMG_3	1	1	+	5.443891863449929	-1.4588609239094166	ACAATATCATTCT
chr1	93593085	93593086	chr1:93593086:G:A	rs7551964	G	A	g	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	93692015	93692016	chr1:93692016:A:C	rs6660740	A	C	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	93711366	93711367	chr1:93711367:A:G	chr1:93711367:A:G	A	G	A	Sox1.mouse_HMG_3	12	1	-	9.948729724647503	9.8629528629008	TCACTTTCATTGT
chr1	93848597	93848598	chr1:93848598:T:C	rs78969815	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	93848598	93848599	chr1:93848599:C:T	rs11165019	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	93976393	93976394	chr1:93976394:T:C	rs743117	T	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	94180789	94180790	chr1:94180790:T:C	rs17111205	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr1	94254296	94254297	chr1:94254297:T:C	rs17111259	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	94298931	94298932	chr1:94298932:T:A	rs11587699	T	A	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	94385018	94385019	chr1:94385019:T:C	rs1765618	T	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	94417295	94417296	chr1:94417296:A:G	rs150767789	A	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	94417777	94417778	chr1:94417778:A:G	rs1422956683	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	94634202	94634203	chr1:94634203:C:T	rs9645363	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr1	94646041	94646042	chr1:94646042:C:T	rs12132926	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	94683281	94683282	chr1:94683282:G:A	rs12739283	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	94692182	94692183	chr1:94692183:T:C	rs10874883	T	C	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	94884485	94884486	chr1:94884486:A:C	rs117424936	A	C	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	94925723	94925724	chr1:94925724:C:T	rs149171141	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	94928795	94928796	chr1:94928796:T:A	rs1132	T	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	94972213	94972214	chr1:94972214:G:T	rs1246349	G	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	95316515	95316516	chr1:95316516:A:G	rs11165375	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	95325499	95325500	chr1:95325500:T:C	rs927703	T	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	95375309	95375310	chr1:95375310:A:C	rs6680011	A	C	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	95532579	95532580	chr1:95532580:C:T	rs78388303	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr1	95912065	95912066	chr1:95912066:A:C	rs34830765	A	C	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	96004628	96004629	chr1:96004629:A:C	rs321252	A	C	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	96327760	96327761	chr1:96327761:C:T	rs17114927	C	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	96327767	96327768	chr1:96327768:T:A	rs34949297	T	A	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	96474562	96474563	chr1:96474563:A:G	rs2181375	A	G	G	Sox1.mouse_HMG_3	4	1	-	4.968349801535139	-1.9317462200795088	TCACTGCCATTAG
chr1	96487107	96487108	chr1:96487108:G:C	rs6593603	G	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	96867127	96867128	chr1:96867128:C:T	rs1401836	C	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	97042568	97042569	chr1:97042569:C:T	rs563268732	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	97070502	97070503	chr1:97070503:T:C	rs535789218	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	97158251	97158252	chr1:97158252:C:T	rs77238270	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	97200859	97200860	chr1:97200860:T:G	rs112157846	T	G	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr1	97278248	97278249	chr1:97278249:A:T	rs641805	A	T	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	97368462	97368463	chr1:97368463:C:T	rs1879371	C	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	97524303	97524304	chr1:97524304:A:T	rs11165889	A	T	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	97661352	97661353	chr1:97661353:C:G	chr1:97661353:C:G	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	97693016	97693017	chr1:97693017:G:A	rs72977714	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	97758498	97758499	chr1:97758499:T:C	rs1177056119	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.768931213299528	0.13371841749491398	TCATTAGCAGTGA
chr1	97807179	97807180	chr1:97807180:A:C	rs191224074	A	C	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	97893962	97893963	chr1:97893963:T:C	rs61787822	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	98736215	98736216	chr1:98736216:T:C	rs11810907	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.1223505549075945	0.48713775910298085	TCTATGCCATTGC
chr1	98749445	98749446	chr1:98749446:A:T	rs67694167	A	T	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	98797861	98797862	chr1:98797862:G:A	rs9729300	G	A	G	Sox1.mouse_HMG_3	6	1	+	4.903319153337801	5.379835092993025	TCAAAGGCATTCA
chr1	98850360	98850361	chr1:98850361:A:G	rs12035716	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.365113835930794	-1.5349821856838557	ACAATTACATGGA
chr1	98950545	98950546	chr1:98950546:G:T	rs309083	G	T	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr1	99279603	99279604	chr1:99279604:G:A	rs149119493	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	99552144	99552145	chr1:99552145:A:G	rs6656134	A	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	99599042	99599043	chr1:99599043:A:G	rs6577389	A	G	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	99600011	99600012	chr1:99600012:A:G	rs7536479	A	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr1	99691260	99691261	chr1:99691261:T:C	rs7514151	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	100045298	100045299	chr1:100045299:T:G	rs834277	T	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	100045325	100045326	chr1:100045326:T:C	rs834278	T	C	C	Sox1.mouse_HMG_3	3	1	-	5.951906000710711	-0.8491211612062954	TCAATAGCACTGC
chr1	100354130	100354131	chr1:100354131:G:A	chr1:100354131:G:A	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	100354132	100354133	chr1:100354133:C:G	rs149981742	C	G	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	100354168	100354169	chr1:100354169:T:C	rs572059964	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr1	100585130	100585131	chr1:100585131:C:A	rs193056840	C	A	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	100747778	100747779	chr1:100747779:A:T	rs10493936	A	T	A	Sox1.mouse_HMG_3	12	1	-	10.67231262272971	13.085753664800855	TCACTATCATTGT
chr1	100759063	100759064	chr1:100759064:C:T	rs12088882	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	100941962	100941963	chr1:100941963:A:G	rs11581062	A	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	101107851	101107852	chr1:101107852:C:T	rs12727236	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	101199077	101199078	chr1:101199078:T:C	rs34792655	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr1	101199087	101199088	chr1:101199088:T:C	rs10875357	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	101204679	101204680	chr1:101204680:A:C	rs1033636	A	C	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	101308089	101308090	chr1:101308090:G:C	rs12042608	G	C	g	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	101398989	101398990	chr1:101398990:T:A	rs114539337	T	A	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	101399455	101399456	chr1:101399456:C:T	rs12041998	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	101820423	101820424	chr1:101820424:A:C	chr1:101820424:A:C	A	C	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	101820426	101820427	chr1:101820427:T:C	chr1:101820427:T:C	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr1	102156079	102156080	chr1:102156080:T:C	rs12131226	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	102156127	102156128	chr1:102156128:T:C	rs12131245	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.240873705502631	-2.6678810738125898	TCAAAACCACTGA
chr1	102897635	102897636	chr1:102897636:T:C	rs1763345	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	103157319	103157320	chr1:103157320:C:T	rs139744894	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	104073092	104073093	chr1:104073093:G:A	rs141938920	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	104239110	104239111	chr1:104239111:C:T	rs61788974	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	104463896	104463897	chr1:104463897:G:A	rs1115851	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	104561058	104561059	chr1:104561059:A:G	rs1597177	A	G	a	Sox1.mouse_HMG_3	8	1	+	12.213656514668902	5.304901735353681	ACAATTCCATTGA
chr1	106278832	106278833	chr1:106278833:C:T	rs11184835	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	106498357	106498358	chr1:106498358:T:C	rs114910083	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	106573948	106573949	chr1:106573949:T:C	rs10881421	T	C	C	Sox1.mouse_HMG_3	0	1	-	7.678853486904318	3.652430941167677	ACAATTGCATTAA
chr1	107596902	107596903	chr1:107596903:G:A	rs17536557	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	107743568	107743569	chr1:107743569:G:T	rs6662917	G	T	G	Sox1.mouse_HMG_3	12	1	+	4.439572530123151	5.314099964375206	TCAATTGCAATGG
chr1	107750135	107750136	chr1:107750136:C:T	rs12144218	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	108150111	108150112	chr1:108150112:A:G	rs11185283	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	108646628	108646629	chr1:108646629:C:T	rs762766728	C	T	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr1	108813593	108813594	chr1:108813594:T:C	rs12140541	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.520036112129844	-2.2809910497871617	TCAATTCTAATGA
chr1	108813610	108813611	chr1:108813611:T:C	rs12140545	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	108851024	108851025	chr1:108851025:G:T	rs1277206	G	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	108862494	108862495	chr1:108862495:G:C	rs12134042	G	C	G	Sox1.mouse_HMG_3	11	1	+	5.847947502820089	1.2811188107005251	TAAATATCATTGC
chr1	109197505	109197506	chr1:109197506:C:G	rs61756684	C	G	C	Sox1.mouse_HMG_3	5	1	-	5.367408376929049	2.0640936948967457	TCAGTGACATTGT
chr1	109225538	109225539	chr1:109225539:T:C	rs7547246	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.008523021436938	-0.8783864863635693	ACAATAACATTCT
chr1	109469078	109469079	chr1:109469079:G:A	rs2152924	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	109488565	109488566	chr1:109488566:T:G	rs12049330	T	G	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	109549795	109549796	chr1:109549796:G:A	rs114984281	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	109777860	109777861	chr1:109777861:A:G	rs7533167	A	G	G	Sox1.mouse_HMG_3	8	1	+	5.537252089840132	-1.3715026894750886	ACAATATCAATGA
chr1	109777867	109777868	chr1:109777868:G:A	rs7519829	G	A	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	109960249	109960250	chr1:109960250:A:G	rs147343972	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	110236461	110236462	chr1:110236462:A:G	rs11102066	A	G	A	Sox1.mouse_HMG_3	4	1	-	3.962073079526967	-2.9380229420876804	TCAATTGCAGTTA
chr1	110330546	110330547	chr1:110330547:T:C	rs12135320	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	110346815	110346816	chr1:110346816:G:A	rs12143620	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	110468684	110468685	chr1:110468685:T:G	rs72975152	T	G	T	Sox1.mouse_HMG_3	2	1	-	4.492880942676994	-2.4158738366382266	TCAGTGACATTGG
chr1	110633364	110633365	chr1:110633365:A:C	rs884217	A	C	A	Sox1.mouse_HMG_3	12	1	-	6.501012288298497	5.626484854046442	TCAATAACATGGT
chr1	110638177	110638178	chr1:110638178:A:G	rs17026200	A	G	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	110756583	110756584	chr1:110756584:T:A	rs72683708	T	A	T	Sox1.mouse_HMG_3	11	1	-	10.472036149931302	7.6975741833098414	TCAATGACATTAA
chr1	111115612	111115613	chr1:111115613:A:C	rs325912	A	C	A	Sox1.mouse_HMG_3	5	1	-	6.29435988423503	5.78527001125015	TCAATTCCATCAA
chr1	111141049	111141050	chr1:111141050:A:G	rs142775180	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	111211993	111211994	chr1:111211994:T:C	rs2783442	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	111221514	111221515	chr1:111221515:C:G	rs2477584	C	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	111499572	111499573	chr1:111499573:T:C	rs1415792	T	C	C	Sox1.mouse_HMG_3	5	1	-	6.440800187721386	5.208127416654298	TCCATACCATTGT
chr1	111582998	111582999	chr1:111582999:G:C	rs148085708	G	C	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	111593335	111593336	chr1:111593336:T:C	rs1890548	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr1	111769588	111769589	chr1:111769589:T:C	rs999894	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	112111045	112111046	chr1:112111046:T:C	rs462936	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	112239584	112239585	chr1:112239585:G:A	rs72695061	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr1	112533234	112533235	chr1:112533235:C:T	rs114929859	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	112533244	112533245	chr1:112533245:T:G	rs11102490	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	112879722	112879723	chr1:112879723:G:C	rs189962983	G	C	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	113057890	113057891	chr1:113057891:C:T	rs72683488	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	113572094	113572095	chr1:113572095:T:C	rs2884704	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	113742726	113742727	chr1:113742727:G:A	rs74713505	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	113758712	113758713	chr1:113758713:C:T	rs61817589	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	113991831	113991832	chr1:113991832:A:G	rs872661	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.792428059065806	0.9055185512652986	TTAATATCATTGC
chr1	114131963	114131964	chr1:114131964:C:G	rs115943992	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	114558549	114558550	chr1:114558550:G:A	rs4839384	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	114581930	114581931	chr1:114581931:C:T	rs529234780	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	115052717	115052718	chr1:115052718:C:A	rs113587983	C	A	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	115052731	115052732	chr1:115052732:C:T	rs112518329	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.1223505549075945	5.208127416654298	TCTATGCCATTGC
chr1	115204544	115204545	chr1:115204545:C:A	rs12081462	C	A	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	115331082	115331083	chr1:115331083:A:G	rs146963439	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.281631515182347	-1.6052779926181608	TCATTGACATTGC
chr1	115462086	115462087	chr1:115462087:G:A	rs531818616	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	115671657	115671658	chr1:115671658:A:G	rs10801913	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	116106844	116106845	chr1:116106845:A:G	rs79777502	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	116666801	116666802	chr1:116666802:C:T	rs188679489	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	116737432	116737433	chr1:116737433:T:C	rs72697386	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.351457311791364	-2.449569850125642	TCAATTTCACTGG
chr1	116755858	116755859	chr1:116755859:G:A	rs191667083	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	116773011	116773012	chr1:116773012:C:T	rs138475570	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr1	116991024	116991025	chr1:116991025:C:T	rs79634644	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	117001793	117001794	chr1:117001794:C:T	rs374341961	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	117003941	117003942	chr1:117003942:A:T	rs75378515	A	T	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	117013542	117013543	chr1:117013543:G:A	rs17235752	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	117117985	117117986	chr1:117117986:C:T	rs1289655	C	T	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	117347756	117347757	chr1:117347757:C:T	rs10923268	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.248414131610671	0.6159466405154792	TGACTAACATTGC
chr1	117616860	117616861	chr1:117616861:A:G	rs3767816	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	117814760	117814761	chr1:117814761:A:G	rs12041230	A	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr1	117824678	117824679	chr1:117824679:T:C	rs6680046	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	118109125	118109126	chr1:118109126:T:C	rs150264376	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	118256606	118256607	chr1:118256607:C:T	rs12081441	C	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	118565002	118565003	chr1:118565003:C:G	rs12128952	C	G	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	118755256	118755257	chr1:118755257:A:G	rs12092621	A	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	118934970	118934971	chr1:118934971:A:T	rs6656528	A	T	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	118954530	118954531	chr1:118954531:G:C	rs12143789	G	C	G	Sox1.mouse_HMG_3	4	1	+	3.8711086985948557	3.8711086985948557	TCAAGAGCATTCA
chr1	119085028	119085029	chr1:119085029:G:A	chr1:119085029:G:A	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr1	119115119	119115120	chr1:119115120:T:A	rs6428794	T	A	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	119482647	119482648	chr1:119482648:G:A	rs1187987196	G	A	.	Sox1.mouse_HMG_3	11	1	+	6.265114103817423	2.155273672831524	TCCCTAGCATTGA
chr1	119505134	119505135	chr1:119505135:C:T	rs145403736	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	119746116	119746117	chr1:119746117:C:G	rs4391705	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	119781882	119781883	chr1:119781883:G:A	rs2582784	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	120434002	120434003	chr1:120434003:G:A	rs3009751	G	A	g	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	121032920	121032921	chr1:121032921:C:T	rs1324534302	C	T	c	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	121121903	121121904	chr1:121121904:C:T	rs145769612	C	T	c	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	121275637	121275638	chr1:121275638:C:T	rs141558743	C	T	C	Sox1.mouse_HMG_3	11	1	-	8.201264356121522	4.091423925135624	TCAATATCATCGT
chr1	125080226	125080227	chr1:125080227:C:T	rs1263934055	C	T	.	Sox1.mouse_HMG_3	7	1	+	7.184615942582777	3.5521484514875845	TCAATTCCATTCG
chr1	125080368	125080369	chr1:125080369:C:T	rs1489436730	C	T	.	Sox1.mouse_HMG_3	7	1	+	4.205291477975598	0.5728239868804059	TCAATTCCAGTCC
chr1	125080879	125080880	chr1:125080880:C:A	rs1219494200	C	A	.	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	125080881	125080882	chr1:125080882:T:C	rs1320009693	T	C	.	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	125150071	125150072	chr1:125150072:C:T	rs917215021	C	T	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	125151718	125151719	chr1:125151719:G:A	rs1013232526	G	A	.	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	125162924	125162925	chr1:125162925:C:G	rs1025835172	C	G	.	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	125182079	125182080	chr1:125182080:A:G	rs1182663818	A	G	.	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	143191298	143191299	chr1:143191299:T:C	rs1168885857	T	C	.	Sox1.mouse_HMG_3	2	1	-	5.741669671347038	-1.1670851079681808	TCAATTCCATTTT
chr1	143253227	143253228	chr1:143253228:G:T	rs1445895122	G	T	.	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	143253228	143253229	chr1:143253229:A:G	rs1385336086	A	G	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr1	145708448	145708449	chr1:145708449:C:T	rs34252135	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	145805189	145805190	chr1:145805190:A:G	rs368823068	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.393812082979352	-2.4072150789376545	TCAATGACATAGG
chr1	145823079	145823080	chr1:145823080:A:G	rs1386606282	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	147041616	147041617	chr1:147041617:G:C	rs72704288	G	C	.	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr1	147388560	147388561	chr1:147388561:C:A	rs116007521	C	A	C	Sox1.mouse_HMG_3	6	1	+	7.667699837840772	7.71925318071731	TTAATTCCATTGT
chr1	147569780	147569781	chr1:147569781:T:C	rs74908659	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.442977436716424	-2.4657773425987974	TCACTGCCATCGG
chr1	148279411	148279412	chr1:148279412:G:A	rs187803347	G	A	.	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	148334627	148334628	chr1:148334628:C:T	rs187833271	C	T	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	148334631	148334632	chr1:148334632:G:A	rs141282838	G	A	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	148334654	148334655	chr1:148334655:C:T	rs115529186	C	T	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	149816972	149816973	chr1:149816973:G:A	rs1198153273	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	149886762	149886763	chr1:149886763:G:C	rs74124040	G	C	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	149886778	149886779	chr1:149886779:T:C	chr1:149886779:T:C	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	150050849	150050850	chr1:150050850:G:A	rs72692873	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	150109579	150109580	chr1:150109580:T:C	chr1:150109580:T:C	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.395541517771441	-2.5045545038432047	GCAATAACATTCA
chr1	150152140	150152141	chr1:150152141:A:G	rs73011273	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.753059556507208	-2.1470364651074414	TCAATACCATAAA
chr1	150215039	150215040	chr1:150215040:T:C	rs6680040	T	C	C	Sox1.mouse_HMG_3	5	1	-	3.6996262531825006	2.466953482115412	TCACTATCACTGC
chr1	150342959	150342960	chr1:150342960:T:C	rs1272798	T	C	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	150381799	150381800	chr1:150381800:G:A	rs834233	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	150464445	150464446	chr1:150464446:A:G	rs75323812	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.078717945093276	-0.7223092168237313	TCAAACTCATTGA
chr1	150723488	150723489	chr1:150723489:G:A	rs6692960	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	150749084	150749085	chr1:150749085:A:G	rs181085131	A	G	A	Sox1.mouse_HMG_3	9	1	-	12.836477151926136	5.9495676441256276	TCAATATCATTGT
chr1	150863962	150863963	chr1:150863963:T:C	rs12406660	T	C	t	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	150881951	150881952	chr1:150881952:A:G	rs191222864	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.525454876006652	-2.3614546317938565	TCAGTTGCATTGG
chr1	151189398	151189399	chr1:151189399:C:A	rs143531012	C	A	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	151356317	151356318	chr1:151356318:T:A	rs744536	T	A	T	Sox1.mouse_HMG_3	0	1	+	4.609272739797124	1.7835161434404818	TCCATGTCATTGC
chr1	151473275	151473276	chr1:151473276:C:T	rs10888415	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	151756279	151756280	chr1:151756280:C:T	rs11204880	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	151766132	151766133	chr1:151766133:G:C	rs116325572	G	C	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	151989959	151989960	chr1:151989960:T:C	rs74501641	T	C	T	Sox1.mouse_HMG_3	10	1	+	7.642032898307713	3.006820102503099	TCAATTTCATTTA
chr1	152043948	152043949	chr1:152043949:A:G	rs3007680	A	G	G	Sox1.mouse_HMG_3	4	1	-	6.028484633435889	-0.8716113881787577	ACTATACCATTGA
chr1	152179611	152179612	chr1:152179612:T:C	rs114394160	T	C	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	152312622	152312623	chr1:152312623:C:T	rs74129461	C	T	-	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	152718890	152718891	chr1:152718891:A:G	rs7545543	A	G	G	Sox1.mouse_HMG_3	4	1	-	7.221865225770653	0.3217692041560061	ACAATTGCATTCA
chr1	152751056	152751057	chr1:152751057:A:G	rs1412550	A	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	153123823	153123824	chr1:153123824:T:G	rs762073843	T	G	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	153244886	153244887	chr1:153244887:A:G	rs11205248	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	153521138	153521139	chr1:153521139:T:C	rs4430277	T	C	C	Sox1.mouse_HMG_3	9	1	+	5.640099185593048	-1.2468103222074596	TCAATTCCATAGC
chr1	153691955	153691956	chr1:153691956:T:C	rs76045845	T	C	c	Sox1.mouse_HMG_3	3	1	-	4.2225183854491615	-2.578508776467844	TCAATCACAGTGG
chr1	153991506	153991507	chr1:153991507:A:G	rs114120114	A	G	a	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	154693873	154693874	chr1:154693874:C:T	rs11264243	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.31825377669314	-0.6400184544204863	TCTATCCCATTGA
chr1	154720527	154720528	chr1:154720528:T:C	rs77510509	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	154744406	154744407	chr1:154744407:T:C	rs10908431	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	154744410	154744411	chr1:154744411:C:T	rs78651737	C	T	c	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr1	154757464	154757465	chr1:154757465:T:C	rs11804231	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	154841876	154841877	chr1:154841877:C:T	rs13376333	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	155045188	155045189	chr1:155045189:T:C	rs114543508	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	155103566	155103567	chr1:155103567:C:T	rs4625273	C	T	c	Sox1.mouse_HMG_3	11	1	-	4.435527675594072	0.3256872446081731	TCAATAGCAGCGC
chr1	155176743	155176744	chr1:155176744:C:T	rs139442224	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	155176744	155176745	chr1:155176745:G:A	rs149676926	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	156109291	156109292	chr1:156109292:C:T	rs915180	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	156376271	156376272	chr1:156376272:T:C	rs74229292	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.813423352329854	0.9265138445293462	TCATTTGCATTGA
chr1	156564732	156564733	chr1:156564733:A:C	rs4661184	A	C	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	156655779	156655780	chr1:156655780:T:C	rs10796963	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	156937288	156937289	chr1:156937289:T:C	rs945508	T	C	C	Sox1.mouse_HMG_3	3	1	-	8.854241229792532	2.053214067875526	TCCATACCATTGA
chr1	156946543	156946544	chr1:156946544:G:C	rs1039295627	G	C	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr1	157047097	157047098	chr1:157047098:T:C	rs539331161	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	157287336	157287337	chr1:157287337:C:A	rs7533959	C	A	c	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	157292095	157292096	chr1:157292096:G:C	rs765617667	G	C	g	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr1	157408387	157408388	chr1:157408388:G:A	rs8179340	G	A	N	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	157432017	157432018	chr1:157432018:G:A	rs75403120	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	157646511	157646512	chr1:157646512:A:G	rs12097236	A	G	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	157705206	157705207	chr1:157705207:G:T	rs2317230	G	T	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	157777283	157777284	chr1:157777284:A:T	rs7517586	A	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	157780676	157780677	chr1:157780677:A:G	rs115222558	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.900245190219536	-1.9866643175809726	TAAATTACATTGG
chr1	157862482	157862483	chr1:157862483:T:G	rs58076511	T	G	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	157882730	157882731	chr1:157882731:A:G	rs12030110	A	G	A	Sox1.mouse_HMG_3	12	1	+	5.086166192679999	1.7981977163567966	TCTATACCAGTGA
chr1	158495150	158495151	chr1:158495151:C:T	rs1259002340	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.936062721151874	6.021839582898576	TGAATAGCATTGC
chr1	158699991	158699992	chr1:158699992:C:T	rs79973962	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.888585574875348	2.2561180837801564	ACAATACCATCGT
chr1	158741503	158741504	chr1:158741504:A:C	rs2852643	A	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr1	158773578	158773579	chr1:158773579:T:C	rs73015561	T	C	T	Sox1.mouse_HMG_3	9	1	+	14.526335295915072	7.639425788114567	TCAATTTCATTGA
chr1	158883639	158883640	chr1:158883640:T:C	rs2852666	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	159005658	159005659	chr1:159005659:C:A	rs856069	C	A	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	159046642	159046643	chr1:159046643:A:C	rs115506051	A	C	.	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	159132485	159132486	chr1:159132486:G:A	rs190652406	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	159132500	159132501	chr1:159132501:A:C	rs183249729	A	C	A	Sox1.mouse_HMG_3	5	1	-	4.4389894945908335	3.9298996216059527	TCACATTCATTGG
chr1	159162741	159162742	chr1:159162742:G:A	rs12045546	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	159635309	159635310	chr1:159635310:T:C	rs2592881	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	159819472	159819473	chr1:159819473:A:C	rs76603630	A	C	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	159932261	159932262	chr1:159932262:T:C	rs75494729	T	C	T	Sox1.mouse_HMG_3	2	1	-	6.741630043472645	-0.16712473584257537	TCACTAACCTTGA
chr1	159979860	159979861	chr1:159979861:T:C	rs2789425	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	159992272	159992273	chr1:159992273:T:C	rs2486257	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	160018894	160018895	chr1:160018895:G:A	rs2211108	G	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	160019136	160019137	chr1:160019137:A:G	rs1934080	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	160053301	160053302	chr1:160053302:A:G	rs12122979	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr1	160114852	160114853	chr1:160114853:T:C	rs3761685	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	160285210	160285211	chr1:160285211:C:G	rs186324994	C	G	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	160285212	160285213	chr1:160285213:G:A	rs12086288	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	160682685	160682686	chr1:160682686:G:A	rs10489637	G	A	A	Sox1.mouse_HMG_3	12	1	-	6.192894687856391	6.278671549603093	TTACTAACATTGC
chr1	160795943	160795944	chr1:160795944:G:T	rs115154491	G	T	g	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	160830813	160830814	chr1:160830814:C:T	rs74124288	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	160869162	160869163	chr1:160869163:A:G	rs4017459	A	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	160908648	160908649	chr1:160908649:C:T	rs56294243	C	T	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	160914273	160914274	chr1:160914274:C:A	rs568828398	C	A	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	161066681	161066682	chr1:161066682:G:A	rs4617422	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	161262113	161262114	chr1:161262114:A:G	rs16832738	A	G	a	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	161551140	161551141	chr1:161551141:C:T	rs56199187	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	161749424	161749425	chr1:161749425:A:C	rs12121310	A	C	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	161891631	161891632	chr1:161891632:T:C	rs78671576	T	C	C	Sox1.mouse_HMG_3	10	1	+	6.221064325066049	1.5858515292614352	TTAAAAACATTGA
chr1	161986013	161986014	chr1:161986014:C:T	rs2341465	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	162072522	162072523	chr1:162072523:A:C	rs1123015	A	C	A	Sox1.mouse_HMG_3	10	1	-	4.525454876006652	-2.3746411456079963	TCATTTGCATTGG
chr1	162182265	162182266	chr1:162182266:C:T	rs6704393	C	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	162266276	162266277	chr1:162266277:T:C	rs77808552	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr1	162305937	162305938	chr1:162305938:A:G	rs1396224	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	162833963	162833964	chr1:162833964:G:A	rs2805042	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	162840672	162840673	chr1:162840673:C:A	rs72713314	C	A	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr1	162858025	162858026	chr1:162858026:T:C	rs1355285	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr1	163116160	163116161	chr1:163116161:A:T	rs2841982	A	T	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	163258143	163258144	chr1:163258144:C:A	rs116332261	C	A	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	163396014	163396015	chr1:163396015:T:A	chr1:163396015:T:A	T	A	T	Sox1.mouse_HMG_3	8	1	-	6.123565208340915	-0.7851895709743058	TCATTAGCATTGT
chr1	163759083	163759084	chr1:163759084:A:G	rs10917840	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	164058311	164058312	chr1:164058312:G:A	rs61811205	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	164058323	164058324	chr1:164058324:C:T	rs144023894	C	T	C	Sox1.mouse_HMG_3	3	1	+	4.190858796778258	-0.4460038359423233	TCACTACCCTTGC
chr1	164080379	164080380	chr1:164080380:G:A	rs6691589	G	A	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	164558834	164558835	chr1:164558835:G:T	rs900042590	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	164564365	164564366	chr1:164564366:C:T	rs8179321	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	164689445	164689446	chr1:164689446:G:A	rs11805889	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	164709114	164709115	chr1:164709115:G:T	rs7526403	G	T	G	Sox1.mouse_HMG_3	1	1	-	5.894430578663734	-1.0083222086956116	TCACTGACATTAT
chr1	164758782	164758783	chr1:164758783:A:T	rs10918066	A	T	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	165054748	165054749	chr1:165054749:T:C	rs1494416	T	C	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	165194839	165194840	chr1:165194840:T:C	rs16840887	T	C	T	Sox1.mouse_HMG_3	12	1	-	5.78527001125015	2.497301534926948	TCAATGCCATCAA
chr1	165228606	165228607	chr1:165228607:T:C	rs10494437	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	165597915	165597916	chr1:165597916:A:G	rs17408590	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.378300349744933	-1.530454429570288	ACAATTACACTGA
chr1	165830481	165830482	chr1:165830482:G:T	rs61802906	G	T	g	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	166352800	166352801	chr1:166352801:C:T	rs11587733	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	166355108	166355109	chr1:166355109:A:G	rs148552395	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	166571162	166571163	chr1:166571163:T:C	rs12143336	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.463152306073157	-0.33787485584384824	GCAATAACATTGC
chr1	166571174	166571175	chr1:166571175:T:C	rs17430677	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	167136476	167136477	chr1:167136477:G:C	rs372909690	G	C	G	Sox1.mouse_HMG_3	5	1	+	2.95818602571117	-0.3451286563211349	TCACTGCCTTTGC
chr1	167142256	167142257	chr1:167142257:A:G	rs10918638	A	G	A	Sox1.mouse_HMG_3	9	1	-	3.8051759615826684	-3.0817335462178392	TCAATCTCTTTGA
chr1	167152723	167152724	chr1:167152724:C:T	rs4657638	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	167163498	167163499	chr1:167163499:T:G	rs34758860	T	G	t	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	167435894	167435895	chr1:167435895:G:A	rs1723023	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	167634519	167634520	chr1:167634520:T:C	rs16859347	T	C	T	Sox1.mouse_HMG_3	0	1	-	5.903218481168677	1.8767959354320354	ACAATAGCATTAC
chr1	167683757	167683758	chr1:167683758:C:A	rs72697727	C	A	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	167720601	167720602	chr1:167720602:G:A	rs10918742	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	167837691	167837692	chr1:167837692:G:T	rs1034466	G	T	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	168360124	168360125	chr1:168360125:C:T	rs16860434	C	T	c	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	168592295	168592296	chr1:168592296:C:T	rs4656606	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	168643335	168643336	chr1:168643336:G:A	rs4488008	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	168844002	168844003	chr1:168844003:A:C	rs6695006	A	C	A	Sox1.mouse_HMG_3	4	1	-	4.351457311791364	-2.548638709823284	TCAATTTCAATGG
chr1	168844003	168844004	chr1:168844004:T:C	rs75819660	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.351457311791364	-2.449569850125642	TCAATTTCAATGG
chr1	169091707	169091708	chr1:169091708:A:G	rs115305638	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.990946184221761	-0.8959633235787474	TCACTTCCATTTA
chr1	169217794	169217795	chr1:169217795:C:G	rs150537477	C	G	c	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	169354303	169354304	chr1:169354304:C:T	rs10800435	C	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	169584819	169584820	chr1:169584820:C:G	rs3753305	C	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	169886434	169886435	chr1:169886435:A:G	rs3766151	A	G	G	Sox1.mouse_HMG_3	8	1	+	8.911796564624945	2.0030417853097244	TAAATAACATTGA
chr1	169891057	169891058	chr1:169891058:C:T	rs16862745	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	170668101	170668102	chr1:170668102:T:C	rs909463866	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	170807707	170807708	chr1:170807708:G:C	rs55813298	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	171037852	171037853	chr1:171037853:A:G	rs72710586	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.391155317234654	-2.4098718446823497	TAAATGACATTGG
chr1	171258347	171258348	chr1:171258348:A:G	rs12141555	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	171484771	171484772	chr1:171484772:A:G	rs114957810	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.313560493054256	-1.5951942862609658	ACAATTCCATGGA
chr1	171646396	171646397	chr1:171646397:G:T	rs12075365	G	T	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	171741264	171741265	chr1:171741265:C:T	rs2298914	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr1	171755780	171755781	chr1:171755781:A:G	rs10158135	A	G	G	Sox1.mouse_HMG_3	8	1	+	4.4775347369678915	-2.4312200423473285	TCATTCACATTGA
chr1	171834661	171834662	chr1:171834662:T:C	rs6698366	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.681780559302554	0.8807533973855481	TCAATGACATGGA
chr1	171843410	171843411	chr1:171843411:G:A	rs7546406	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	171850877	171850878	chr1:171850878:G:C	rs10798706	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.3778461163499625	-1.5249066710093835	ACAAAAGCATTGC
chr1	172495758	172495759	chr1:172495759:C:A	rs12068145	C	A	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	172616515	172616516	chr1:172616516:A:G	rs9425646	A	G	G	Sox1.mouse_HMG_3	12	1	+	5.612180794357776	2.3242123180345744	ACAACAGCATTGA
chr1	172637659	172637660	chr1:172637660:G:A	rs116419206	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	172658357	172658358	chr1:172658358:C:T	rs763110	C	T	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	172711428	172711429	chr1:172711429:C:T	rs56663247	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	172875109	172875110	chr1:172875110:T:C	rs12136659	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	172895511	172895512	chr1:172895512:T:A	rs12142280	T	A	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	172903815	172903816	chr1:172903816:A:G	rs16845066	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.2259847460434194	-1.5750424158735858	TCAATTTCACTGT
chr1	173297372	173297373	chr1:173297373:A:G	rs74371917	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	173412395	173412396	chr1:173412396:G:A	rs10753077	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	173561767	173561768	chr1:173561768:C:A	rs1381027	C	A	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	173570497	173570498	chr1:173570498:G:A	rs80054184	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	173856759	173856760	chr1:173856760:T:G	rs57068378	T	G	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	173862962	173862963	chr1:173862963:G:A	rs9660185	G	A	G	Sox1.mouse_HMG_3	7	1	-	7.888174144541246	4.255706653446055	ACAATCTCATTGA
chr1	173862979	173862980	chr1:173862980:A:G	rs79243836	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	174776746	174776747	chr1:174776747:G:T	rs79056489	G	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	174789299	174789300	chr1:174789300:C:G	rs140804258	C	G	C	Sox1.mouse_HMG_3	9	1	-	5.8881032460207	2.7692687753327254	TTAATTGCAGTGA
chr1	175247264	175247265	chr1:175247265:C:A	rs71645237	C	A	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	175303531	175303532	chr1:175303532:A:G	rs2861277	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	175563050	175563051	chr1:175563051:A:T	rs10158732	A	T	A	Sox1.mouse_HMG_3	9	1	-	5.1307791579229765	-1.756130349877531	ACAAATACATTGC
chr1	175661386	175661387	chr1:175661387:T:C	rs10753108	T	C	T	Sox1.mouse_HMG_3	11	1	-	6.345913227111568	10.455753658097466	TCAATTACATCAA
chr1	176829223	176829224	chr1:176829224:T:C	rs16850236	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.190870432287435	1.3898432703704293	TCAAGTACATTGA
chr1	176843759	176843760	chr1:176843760:C:T	rs1883431	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	177021280	177021281	chr1:177021281:G:T	rs7545444	G	T	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	177772871	177772872	chr1:177772872:G:A	rs3131333	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	177801732	177801733	chr1:177801733:C:A	rs11585009	C	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	178005292	178005293	chr1:178005293:G:T	rs12076517	G	T	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	178072519	178072520	chr1:178072520:A:G	rs10465513	A	G	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	178283097	178283098	chr1:178283098:C:A	rs548322153	C	A	C	Sox1.mouse_HMG_3	6	1	+	4.3625832945977905	4.4141366374743285	TCAATTCCTGTGA
chr1	178573462	178573463	chr1:178573463:G:A	rs143218531	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	178627658	178627659	chr1:178627659:A:T	rs2811304	A	T	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	179027277	179027278	chr1:179027278:A:G	rs10913673	A	G	A	Sox1.mouse_HMG_3	12	1	+	5.032441332750334	1.7444728564271315	TCACTGGCGTTGA
chr1	179101901	179101902	chr1:179101902:A:G	rs17361990	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr1	179126412	179126413	chr1:179126413:C:T	rs28914528	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	179346221	179346222	chr1:179346222:C:A	rs2152319	C	A	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	179484856	179484857	chr1:179484857:A:C	rs36027796	A	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	179664025	179664026	chr1:179664026:C:T	rs12042409	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	179874155	179874156	chr1:179874156:T:G	rs668813	T	G	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	180068441	180068442	chr1:180068442:A:C	rs12138429	A	C	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	180168703	180168704	chr1:180168704:A:G	rs150472198	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.497481426983843	-1.4112733523313783	TTAAATACATTGA
chr1	180184427	180184428	chr1:180184428:C:T	rs6664185	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	180269359	180269360	chr1:180269360:A:G	rs2290478	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	180554747	180554748	chr1:180554748:T:G	rs7551178	T	G	G	Sox1.mouse_HMG_3	9	1	+	10.893867804819878	7.125792767707347	TCAATTTTATTGA
chr1	180563377	180563378	chr1:180563378:A:G	rs61811629	A	G	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr1	180563389	180563390	chr1:180563390:T:C	rs61811630	T	C	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	180567960	180567961	chr1:180567961:C:T	rs76044604	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	180600510	180600511	chr1:180600511:A:T	rs78789177	A	T	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	180644026	180644027	chr1:180644027:A:G	rs16856361	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	180787919	180787920	chr1:180787920:A:G	rs3761904	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr1	181149555	181149556	chr1:181149556:T:C	rs12066554	T	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	181161257	181161258	chr1:181161258:T:G	rs73044273	T	G	T	Sox1.mouse_HMG_3	8	1	-	7.667699837840772	0.7589450585255515	TTAATTCCATTGT
chr1	181423562	181423563	chr1:181423563:T:C	rs631583	T	C	C	Sox1.mouse_HMG_3	4	1	+	7.37436741994599	0.47427139833134335	TCACTGGCATTCA
chr1	181643800	181643801	chr1:181643801:C:T	rs10910978	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	181932032	181932033	chr1:181932033:G:T	rs61816374	G	T	G	Sox1.mouse_HMG_3	7	1	-	3.489121170210763	-1.8013800151372676	TCACTTCCACTGC
chr1	182340020	182340021	chr1:182340021:T:C	rs35245473	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.953587398710406	1.318374602905792	ACAATCACATTGC
chr1	182374214	182374215	chr1:182374215:G:A	rs79038403	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr1	182444413	182444414	chr1:182444414:G:A	rs73057336	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	182579471	182579472	chr1:182579472:C:A	rs557934	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	182606535	182606536	chr1:182606536:G:A	rs3754289	G	A	G	Sox1.mouse_HMG_3	11	1	+	6.644391249100723	2.534550818114824	ACAAAGGCATTGA
chr1	182795968	182795969	chr1:182795969:C:T	rs6698614	C	T	C	Sox1.mouse_HMG_3	11	1	-	7.178514413292989	3.0686739823070908	ACACTGACATTGT
chr1	183060843	183060844	chr1:183060844:G:T	rs73051750	G	T	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	183138529	183138530	chr1:183138530:G:A	rs2245784	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr1	183282368	183282369	chr1:183282369:C:T	rs885449	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	183638971	183638972	chr1:183638972:C:T	rs12024089	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	183654962	183654963	chr1:183654963:G:T	rs6692924	G	T	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	183685553	183685554	chr1:183685554:T:C	rs11802816	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	183689519	183689520	chr1:183689520:T:C	chr1:183689520:T:C	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	183689525	183689526	chr1:183689526:T:G	chr1:183689526:T:G	T	G	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	183817819	183817820	chr1:183817820:C:T	rs114423999	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	183817835	183817836	chr1:183817836:A:G	rs56346943	A	G	A	Sox1.mouse_HMG_3	10	1	-	3.636994347016255	-0.9982184487883592	ACAGTACCATTGC
chr1	183998410	183998411	chr1:183998411:C:T	rs4651163	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	184020180	184020181	chr1:184020181:A:G	rs16822334	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	184022770	184022771	chr1:184022771:G:A	rs12128716	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr1	184022819	184022820	chr1:184022820:A:T	rs74132762	A	T	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	184151070	184151071	chr1:184151071:T:A	rs114398179	T	A	T	Sox1.mouse_HMG_3	6	1	+	9.382032627125579	9.946663785112587	TCAAAGTCATTGA
chr1	184299778	184299779	chr1:184299779:T:C	rs884902	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	184634860	184634861	chr1:184634861:A:C	chr1:184634861:A:C	A	C	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	184634864	184634865	chr1:184634865:A:G	chr1:184634865:A:G	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	184825251	184825252	chr1:184825252:C:G	rs10797989	C	G	C	Sox1.mouse_HMG_3	2	1	-	3.937620697819106	3.937620697819106	TCGATTGCAGTGA
chr1	184836141	184836142	chr1:184836142:A:T	rs116173697	A	T	A	Sox1.mouse_HMG_3	8	1	+	9.649270936427905	2.7405161571126873	ACAATACCATTGG
chr1	184953651	184953652	chr1:184953652:C:T	rs73054649	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	185260668	185260669	chr1:185260669:T:C	rs7539658	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.2849401233547315	-1.6238146559604902	ACAATTACATTCT
chr1	185917917	185917918	chr1:185917918:C:A	rs115863866	C	A	C	Sox1.mouse_HMG_3	7	1	-	3.966639086669715	7.213907986039134	TCAATTGGAGTGA
chr1	185972642	185972643	chr1:185972643:G:A	rs6688811	G	A	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	186079541	186079542	chr1:186079542:C:T	rs114560616	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	186615288	186615289	chr1:186615289:T:C	rs777644413	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	186663184	186663185	chr1:186663185:C:T	rs10911902	C	T	C	Sox1.mouse_HMG_3	5	1	-	5.53080254392027	6.7634753149873585	TCACTGACACTGA
chr1	186689697	186689698	chr1:186689698:C:G	rs10911911	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	186887095	186887096	chr1:186887096:C:G	rs16826066	C	G	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	186903573	186903574	chr1:186903574:A:G	rs1033409	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	187092016	187092017	chr1:187092017:A:G	rs12403165	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	187229560	187229561	chr1:187229561:T:C	rs74407376	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	187342588	187342589	chr1:187342589:A:T	rs1148760	A	T	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	187577897	187577898	chr1:187577898:T:C	rs2789396	T	C	t	Sox1.mouse_HMG_3	9	1	+	8.538656087328029	1.6517465795275206	TCACAAGCATTGA
chr1	187688115	187688116	chr1:187688116:G:A	rs3127494	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	187868010	187868011	chr1:187868011:A:G	rs57862334	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	187879242	187879243	chr1:187879243:G:C	rs59642144	G	C	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	188371704	188371705	chr1:188371705:A:G	rs1387336	A	G	G	Sox1.mouse_HMG_3	5	1	+	6.4983555225537994	5.265682751486711	TAAATAACATTGT
chr1	188466687	188466688	chr1:188466688:G:A	rs902007	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	188479331	188479332	chr1:188479332:G:C	rs4414003	G	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	188574003	188574004	chr1:188574004:T:C	rs900340	T	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	188574004	188574005	chr1:188574005:G:A	rs3889497	G	A	g	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	188700330	188700331	chr1:188700331:T:C	rs7514277	T	C	C	Sox1.mouse_HMG_3	4	1	+	5.927722372610916	-0.9723736490037329	TCAATATCTTTGT
chr1	189253830	189253831	chr1:189253831:C:T	rs6700979	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	189501722	189501723	chr1:189501723:C:T	rs12726610	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	189513390	189513391	chr1:189513391:C:T	rs12138948	C	T	t	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	189657160	189657161	chr1:189657161:G:A	rs2027325	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	189657188	189657189	chr1:189657189:G:A	rs554431	G	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	190132900	190132901	chr1:190132901:C:T	rs10753936	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	191022960	191022961	chr1:191022961:A:C	chr1:191022961:A:C	A	C	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	191582222	191582223	chr1:191582223:G:A	rs72727109	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	192291282	192291283	chr1:192291283:A:G	rs6428092	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	192724865	192724866	chr1:192724866:C:A	chr1:192724866:C:A	C	A	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr1	192775681	192775682	chr1:192775682:T:G	rs1342806	T	G	G	Sox1.mouse_HMG_3	2	1	-	4.579090369525403	-2.329664409789815	TGAATATCAGTGA
chr1	192861979	192861980	chr1:192861980:C:T	rs1231760	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	193123077	193123078	chr1:193123078:A:T	rs10158344	A	T	a	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr1	193242077	193242078	chr1:193242078:A:G	rs7515024	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	193288714	193288715	chr1:193288715:A:G	rs10801193	A	G	a	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr1	193589721	193589722	chr1:193589722:A:G	rs568553746	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	193589750	193589751	chr1:193589751:C:G	rs731360	C	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	194063140	194063141	chr1:194063141:G:A	rs1442423	G	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	194478963	194478964	chr1:194478964:C:G	rs10921586	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	194955959	194955960	chr1:194955960:C:G	rs572773	C	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr1	195548756	195548757	chr1:195548757:T:C	rs80355645	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	195865848	195865849	chr1:195865849:C:G	rs4587548	C	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	195901444	195901445	chr1:195901445:A:T	rs16839087	A	T	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	196088768	196088769	chr1:196088769:G:A	rs10922021	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	196409779	196409780	chr1:196409780:G:A	rs12143693	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	196590455	196590456	chr1:196590456:A:G	rs4633231	A	G	A	Sox1.mouse_HMG_3	4	1	-	3.937620697819106	-2.9624753237955415	TCCATTGCAGTGA
chr1	196639027	196639028	chr1:196639028:A:G	rs565088	A	G	G	Sox1.mouse_HMG_3	2	1	+	7.075550006854282	0.16679522753906273	TCACTACCATTAT
chr1	197763924	197763925	chr1:197763925:G:A	rs1775456	G	A	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr1	198123423	198123424	chr1:198123424:C:T	rs113161864	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr1	198654053	198654054	chr1:198654054:T:A	rs16843597	T	A	T	Sox1.mouse_HMG_3	11	1	-	6.784027373833981	4.00956540721252	TCAATTTTATTAA
chr1	199102510	199102511	chr1:199102511:C:T	rs77678300	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	199152201	199152202	chr1:199152202:G:A	rs3861924	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	199394982	199394983	chr1:199394983:G:T	rs4562659	G	T	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	199844043	199844044	chr1:199844044:G:C	rs11806575	G	C	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	200021558	200021559	chr1:200021559:T:G	rs28698778	T	G	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	200180978	200180979	chr1:200180979:C:T	rs144399166	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	200298479	200298480	chr1:200298480:A:G	rs10800693	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	200410002	200410003	chr1:200410003:T:G	chr1:200410003:T:G	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	200567923	200567924	chr1:200567924:T:C	rs4915204	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	200866596	200866597	chr1:200866597:C:T	rs72746883	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	201089384	201089385	chr1:201089385:C:T	rs35534614	C	T	C	Sox1.mouse_HMG_3	6	1	+	12.366158708844239	11.853080893733766	TCACTGCCATTGA
chr1	201147355	201147356	chr1:201147356:C:T	rs188222105	C	T	C	Sox1.mouse_HMG_3	11	1	-	2.958186025711171	-1.1516544052747273	TCTCTGCCATTGC
chr1	201147373	201147374	chr1:201147374:T:C	rs4915489	T	C	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	201147384	201147385	chr1:201147385:A:C	rs10920133	A	C	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	201197306	201197307	chr1:201197307:T:C	rs11589317	T	C	C	Sox1.mouse_HMG_3	4	1	+	7.217868097929156	0.31777207631450755	TCACTGTCATCGA
chr1	201309777	201309778	chr1:201309778:A:G	rs145611064	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.718650194111307	0.08343739830669228	TCACAGTCATTGC
chr1	201430959	201430960	chr1:201430960:G:T	rs10800777	G	T	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	201647498	201647499	chr1:201647499:G:A	rs7364578	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr1	201876446	201876447	chr1:201876447:C:A	rs8024	C	A	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	201905354	201905355	chr1:201905355:G:A	rs72744806	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	201917519	201917520	chr1:201917520:A:G	rs2047263	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	201917532	201917533	chr1:201917533:A:G	rs762404407	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.640099185593048	-1.2686555937221724	TCAACTCCATTGC
chr1	202381051	202381052	chr1:202381052:C:T	rs2696956	C	T	c	Sox1.mouse_HMG_3	12	1	+	8.271986816391653	8.357763678138356	TCAATAGCATTCC
chr1	202532243	202532244	chr1:202532244:G:A	rs975527518	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	202657736	202657737	chr1:202657737:C:A	rs546579042	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	202664355	202664356	chr1:202664356:C:A	rs16850204	C	A	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr1	202715739	202715740	chr1:202715740:C:T	rs4245699	C	T	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	203114022	203114023	chr1:203114023:G:A	rs17510253	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	203127638	203127639	chr1:203127639:G:A	chr1:203127639:G:A	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	203328218	203328219	chr1:203328219:G:A	rs1172705570	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	203364949	203364950	chr1:203364950:T:A	rs753976944	T	A	T	Sox1.mouse_HMG_3	10	1	+	5.094824950380572	-1.8052710712340763	TCAAGACCAGTGA
chr1	203450594	203450595	chr1:203450595:A:G	rs79715636	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.636050943401331	0.749141435600823	ACACTTCCATTGT
chr1	203535415	203535416	chr1:203535416:C:T	rs35712732	C	T	C	Sox1.mouse_HMG_3	1	1	+	2.958186025711171	-2.0000862054024555	TCGCTGCCATTGC
chr1	204300056	204300057	chr1:204300057:G:A	rs4531346	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	204396864	204396865	chr1:204396865:G:A	rs2942144	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	204396868	204396869	chr1:204396869:T:C	rs2942145	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	204494033	204494034	chr1:204494034:A:G	rs773073081	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	204508848	204508849	chr1:204508849:A:G	rs11240754	A	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	204638279	204638280	chr1:204638280:T:C	rs58651344	T	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	204638294	204638295	chr1:204638295:T:C	rs57886440	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.7918239202432105	-2.1082721013714365	ACCATTTCATTGA
chr1	204638312	204638313	chr1:204638313:C:T	rs11240231	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr1	205374499	205374500	chr1:205374500:T:C	rs79345034	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.639425788114567	0.8383986261975604	TCAATTTCAATGA
chr1	205374519	205374520	chr1:205374520:G:A	rs12402771	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	205446143	205446144	chr1:205446144:G:A	rs16855619	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr1	205706111	205706112	chr1:205706112:C:T	rs72750964	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	205860119	205860120	chr1:205860120:C:A	rs139573720	C	A	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	205917721	205917722	chr1:205917722:C:T	rs16830374	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	205984697	205984698	chr1:205984698:T:C	rs878898522	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	205991648	205991649	chr1:205991649:C:T	rs1052406079	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.73916804529069	0.7808958141770641	TCATTTCCATTGC
chr1	206101059	206101060	chr1:206101060:C:T	rs28523378	C	T	C	Sox1.mouse_HMG_3	1	1	+	3.5530527604427538	-1.4052194706708725	TCCCTTCCATTGT
chr1	206105741	206105742	chr1:206105742:G:A	rs55703016	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	206470603	206470604	chr1:206470604:G:A	rs41303988	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	206470629	206470630	chr1:206470630:A:C	rs17020312	A	C	A	Sox1.mouse_HMG_3	4	1	-	7.286252201614204	0.38615617999955765	TCACTGTCATTCA
chr1	206554705	206554706	chr1:206554706:C:T	rs10779474	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr1	206587353	206587354	chr1:206587354:A:T	rs7541445	A	T	T	Sox1.mouse_HMG_3	8	1	+	5.032441332750334	-1.8763134465648856	TCTCTGGCATTGA
chr1	206587361	206587362	chr1:206587362:C:T	rs7541507	C	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	206595697	206595698	chr1:206595698:T:C	rs11584983	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	206801433	206801434	chr1:206801434:T:C	rs12042283	T	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	206817438	206817439	chr1:206817439:T:A	rs2176511	T	A	A	Sox1.mouse_HMG_3	10	1	+	7.493963949873148	0.5938679282585007	TCAATGTCATTAT
chr1	206890442	206890443	chr1:206890443:T:C	rs143827535	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	206962279	206962280	chr1:206962280:G:A	rs202042926	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	206979330	206979331	chr1:206979331:A:C	rs17352409	A	C	A	Sox1.mouse_HMG_3	4	1	-	6.880893391539319	-0.01920263007532852	TCACTTATATTGT
chr1	207014854	207014855	chr1:207014855:G:A	rs75711169	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	207014861	207014862	chr1:207014862:G:A	rs2842721	G	A	A	Sox1.mouse_HMG_3	9	1	-	4.813669191757924	11.700578699558429	ACAATTTCACTGA
chr1	207077966	207077967	chr1:207077967:C:T	rs564562430	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	207644266	207644267	chr1:207644267:T:C	rs10863437	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	207644285	207644286	chr1:207644286:G:A	rs9651101	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	207797620	207797621	chr1:207797621:A:G	rs114348992	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.354064421984511	-2.4469627399324936	TCAATTTCATTTG
chr1	207807731	207807732	chr1:207807732:C:T	rs774824117	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	207819993	207819994	chr1:207819994:G:C	rs2235768	G	C	G	Sox1.mouse_HMG_3	3	1	-	4.917483866391228	0.2806212336706473	ACACTGTCATTAA
chr1	207870061	207870062	chr1:207870062:G:A	rs2745964	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.179905889740008	5.265682751486711	TAAATGACATTGC
chr1	207924819	207924820	chr1:207924820:G:A	rs1160530	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	207944241	207944242	chr1:207944242:G:C	rs11576704	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.9521747543187775	-0.9505780330405682	TCAATATCATTTT
chr1	207951858	207951859	chr1:207951859:G:C	rs11118958	G	C	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr1	207995267	207995268	chr1:207995268:T:G	rs586683	T	G	G	Sox1.mouse_HMG_3	8	1	-	4.31825377669314	-2.5905010026220805	TCCATCCCATTGA
chr1	208111881	208111882	chr1:208111882:A:G	rs145362681	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	208128301	208128302	chr1:208128302:A:T	rs3991423	A	T	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	208137563	208137564	chr1:208137564:C:T	rs473500	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.014424218803629	-0.09541621218226792	TCACTGACAGCGA
chr1	208180109	208180110	chr1:208180110:T:G	rs116862989	T	G	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	208347403	208347404	chr1:208347404:T:A	rs568534943	T	A	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	208500137	208500138	chr1:208500138:C:G	rs12141756	C	G	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	208563920	208563921	chr1:208563921:T:C	rs12029518	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	208615691	208615692	chr1:208615692:T:C	rs56768392	T	C	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr1	208988445	208988446	chr1:208988446:A:T	rs10863738	A	T	A	Sox1.mouse_HMG_3	12	1	+	4.287412537672969	1.8739714956018223	TCCATACCATTCA
chr1	209045279	209045280	chr1:209045280:C:T	rs76007708	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	209064105	209064106	chr1:209064106:C:T	rs17014015	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	209064124	209064125	chr1:209064125:A:C	rs12410473	A	C	A	Sox1.mouse_HMG_3	10	1	-	5.617826096345867	-1.28226992526878	TCAATAACGTTGG
chr1	209621206	209621207	chr1:209621207:T:G	rs742255	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	209651480	209651481	chr1:209651481:G:A	rs3753523	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	209658244	209658245	chr1:209658245:T:C	rs742376	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.58118902357371	1.6724342442584887	ACAATTCTATTGA
chr1	209721952	209721953	chr1:209721953:C:G	rs3766619	C	G	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	209766253	209766254	chr1:209766254:C:T	rs10779513	C	T	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	210373701	210373702	chr1:210373702:A:G	rs115554358	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr1	210445744	210445745	chr1:210445745:A:G	rs3765846	A	G	A	Sox1.mouse_HMG_3	4	1	-	10.50461008326096	3.604514061646314	TCAATTGCATTAA
chr1	210500864	210500865	chr1:210500865:C:T	rs12411254	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	210829083	210829084	chr1:210829084:C:T	rs76389800	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	210979093	210979094	chr1:210979094:A:T	rs61849024	A	T	a	Sox1.mouse_HMG_3	8	1	+	8.152503603225037	1.2437488239098162	TCAATTCCACTGA
chr1	210989696	210989697	chr1:210989697:T:C	rs6678283	T	C	T	Sox1.mouse_HMG_3	0	1	+	6.2111626813297125	-0.6410164607635724	TCAAATGCAGTGA
chr1	211069581	211069582	chr1:211069582:T:A	rs4951716	T	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr1	211357137	211357138	chr1:211357138:G:A	rs12752670	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	211471986	211471987	chr1:211471987:A:G	rs10494937	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.954068269887815	0.06715876208730731	TCACTATTATTGC
chr1	211918023	211918024	chr1:211918024:A:G	rs2808383	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	211918026	211918027	chr1:211918027:C:T	rs113945518	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	212231604	212231605	chr1:212231605:T:C	rs6668866	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.037143391136462	-0.8716113881787577	ACAATACCATAGA
chr1	212236548	212236549	chr1:212236549:T:C	rs1565737	T	C	C	Sox1.mouse_HMG_3	11	1	+	4.3427061584010005	6.660179863888796	TCAATCCCATTTA
chr1	212529289	212529290	chr1:212529290:C:G	rs143577983	C	G	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	212529313	212529314	chr1:212529314:A:G	rs1331060	A	G	A	Sox1.mouse_HMG_3	7	1	-	7.138737229114312	10.771204720209502	TCAATAGTATTCA
chr1	212688613	212688614	chr1:212688614:T:C	rs56059979	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	212691649	212691650	chr1:212691650:A:G	rs12068304	A	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	212744018	212744019	chr1:212744019:T:C	rs6664049	T	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr1	213126824	213126825	chr1:213126825:T:C	rs6540780	T	C	C	Sox1.mouse_HMG_3	8	1	-	7.126961070416451	0.2182062911012299	ACACTGCCATTGT
chr1	213273609	213273610	chr1:213273610:C:A	rs61832501	C	A	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	213370872	213370873	chr1:213370873:G:A	rs80048882	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	213410953	213410954	chr1:213410954:G:A	rs74421592	G	A	G	Sox1.mouse_HMG_3	2	1	-	3.4954455359057106	3.4954455359057106	TCCATTCCATCGA
chr1	213720276	213720277	chr1:213720277:G:T	rs114263690	G	T	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	213772804	213772805	chr1:213772805:G:A	rs79159445	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr1	213852365	213852366	chr1:213852366:T:C	rs76628375	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.088696734013	-0.7123304279040059	ACAATAACATAGA
chr1	213892725	213892726	chr1:213892726:C:T	rs143931810	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	213997090	213997091	chr1:213997091:G:A	rs149162531	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	214030771	214030772	chr1:214030772:C:T	rs72753602	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	214303952	214303953	chr1:214303953:C:T	rs6687411	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	214303959	214303960	chr1:214303960:G:A	rs78905729	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	214322359	214322360	chr1:214322360:T:C	rs11120295	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	214665109	214665110	chr1:214665110:A:G	rs112603388	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	214934311	214934312	chr1:214934312:T:C	rs73076282	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	214968226	214968227	chr1:214968227:C:T	rs10494988	C	T	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	215043514	215043515	chr1:215043515:A:G	rs79649803	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	215345966	215345967	chr1:215345967:C:A	rs116817061	C	A	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	215384574	215384575	chr1:215384575:T:C	rs11120584	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	216560827	216560828	chr1:216560828:C:T	rs569735598	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	216666771	216666772	chr1:216666772:G:T	rs4532915	G	T	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	216904465	216904466	chr1:216904466:G:A	rs114661314	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	217009365	217009366	chr1:217009366:T:A	rs12738035	T	A	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	217159977	217159978	chr1:217159978:G:A	rs1532717	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	217418557	217418558	chr1:217418558:C:T	rs265119	C	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	218380186	218380187	chr1:218380187:C:T	rs2009112	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	218380191	218380192	chr1:218380192:G:C	rs191340150	G	C	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	218496754	218496755	chr1:218496755:G:A	rs146459393	G	A	G	Sox1.mouse_HMG_3	9	1	+	4.581747135270101	1.4629126645821262	TCAACATCAGTGA
chr1	218501385	218501386	chr1:218501386:A:G	rs1377175518	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	218703235	218703236	chr1:218703236:T:C	rs79434775	T	C	C	Sox1.mouse_HMG_3	12	1	-	4.804612899383746	1.5166444230605434	TCAATAACATGAA
chr1	218775419	218775420	chr1:218775420:G:A	rs17048594	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	218945285	218945286	chr1:218945286:A:G	rs1024284697	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	218967686	218967687	chr1:218967687:G:C	rs627486	G	C	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	218979557	218979558	chr1:218979558:T:C	rs12562018	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	219085226	219085227	chr1:219085227:C:A	rs562830861	C	A	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	219220982	219220983	chr1:219220983:A:C	rs9663074	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	219294689	219294690	chr1:219294690:C:T	rs17005234	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.989316592889178	1.3568491017939854	ACACATGCATTGA
chr1	219310986	219310987	chr1:219310987:G:A	rs10157397	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr1	219311021	219311022	chr1:219311022:G:A	rs75103322	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr1	219341025	219341026	chr1:219341026:G:A	rs17005289	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	219371724	219371725	chr1:219371725:T:C	rs74572593	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	219460314	219460315	chr1:219460315:G:A	rs6689100	G	A	A	Sox1.mouse_HMG_3	1	1	-	9.62452938869379	4.666257157580166	ACACTTGCATTGA
chr1	219466962	219466963	chr1:219466963:C:G	rs2605091	C	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr1	219550063	219550064	chr1:219550064:C:T	rs10735496	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	219636004	219636005	chr1:219636005:T:C	rs10863470	T	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	219676381	219676382	chr1:219676382:A:G	rs10746390	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	219752439	219752440	chr1:219752440:T:C	rs56028008	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.311867091926922	-1.5403120501663625	TCAGTTTCATTGT
chr1	219771648	219771649	chr1:219771649:T:C	rs6691756	T	C	t	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	219903579	219903580	chr1:219903580:A:G	rs17006822	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr1	219908196	219908197	chr1:219908197:C:T	rs7532352	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	219926727	219926728	chr1:219926728:A:G	rs7525274	A	G	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	219994049	219994050	chr1:219994050:G:C	rs10779393	G	C	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	220768093	220768094	chr1:220768094:C:T	rs139836771	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr1	220768101	220768102	chr1:220768102:G:A	rs11118598	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	220783481	220783482	chr1:220783482:A:G	rs57298117	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	220797705	220797706	chr1:220797706:G:T	rs2807835	G	T	T	Sox1.mouse_HMG_3	1	1	-	5.930060729195997	-0.9726920581633471	TCAATAGCCTTGC
chr1	220893760	220893761	chr1:220893761:T:G	rs2807863	T	G	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	221188379	221188380	chr1:221188380:A:G	rs9431436	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	221713084	221713085	chr1:221713085:G:A	rs139504652	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	221713088	221713089	chr1:221713089:A:G	rs149306847	A	G	A	Sox1.mouse_HMG_3	9	1	-	9.591955455364134	2.705045947563627	ACACTGACATTGA
chr1	221724964	221724965	chr1:221724965:C:T	rs12044821	C	T	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	221839947	221839948	chr1:221839948:C:T	rs34411394	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.310115195408503	4.797037380298033	TCACTGCCAGTGG
chr1	221989874	221989875	chr1:221989875:G:A	rs1416896	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	222040974	222040975	chr1:222040975:T:G	rs75572255	T	G	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	222371371	222371372	chr1:222371372:A:G	rs79403508	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	222377993	222377994	chr1:222377994:C:T	rs4639770	C	T	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	222415963	222415964	chr1:222415964:T:C	rs116124097	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr1	222554213	222554214	chr1:222554214:T:C	rs11485178	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	222588428	222588429	chr1:222588429:A:G	rs2270705	A	G	A	Sox1.mouse_HMG_3	4	1	-	8.03052052451402	1.1304245028993736	ATAATAACATTGA
chr1	222600226	222600227	chr1:222600227:A:G	rs34853495	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	222910780	222910781	chr1:222910781:G:T	rs72742237	G	T	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	222915464	222915465	chr1:222915465:A:T	rs17163572	A	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	223053166	223053167	chr1:223053167:A:G	rs28615394	A	G	A	Sox1.mouse_HMG_3	9	1	-	3.553052760442753	-3.3338567473577547	TCACTTCCCTTGT
chr1	223338792	223338793	chr1:223338793:A:G	rs61838240	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr1	223420182	223420183	chr1:223420183:G:A	rs1772288	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	223420186	223420187	chr1:223420187:G:A	rs1772289	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr1	223545099	223545100	chr1:223545100:A:G	rs61823525	A	G	a	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	223720044	223720045	chr1:223720045:C:G	rs28370031	C	G	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr1	223720047	223720048	chr1:223720048:T:C	rs28370032	T	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	223775226	223775227	chr1:223775227:G:A	rs10961	G	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	223775240	223775241	chr1:223775241:C:T	rs12043790	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	224012720	224012721	chr1:224012721:A:G	rs140355443	A	G	-	Sox1.mouse_HMG_3	12	1	-	8.059143376834834	7.973366515088131	TCAATTCCATTCT
chr1	224013251	224013252	chr1:224013252:A:T	rs12074424	A	T	-	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	224013382	224013383	chr1:224013383:A:G	rs62651634	A	G	-	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	224013405	224013406	chr1:224013406:G:A	rs559080841	G	A	-	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	224212472	224212473	chr1:224212473:A:G	rs6682292	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr1	224498879	224498880	chr1:224498880:C:T	rs56081029	C	T	C	Sox1.mouse_HMG_3	12	1	+	7.601827424531166	7.687604286277869	ACACTTACATTGC
chr1	224544403	224544404	chr1:224544404:C:T	rs989755	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	224632457	224632458	chr1:224632458:T:C	rs112690485	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.101883247827141	-0.6991439140898661	ACAATAACAATGA
chr1	224632476	224632477	chr1:224632477:T:C	rs6664616	T	C	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr1	224673248	224673249	chr1:224673249:C:A	rs6426145	C	A	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	224799117	224799118	chr1:224799118:C:T	rs2574875	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	225434561	225434562	chr1:225434562:A:G	rs16844896	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr1	225711165	225711166	chr1:225711166:T:C	rs12031529	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr1	226559627	226559628	chr1:226559628:G:A	rs6679966	G	A	g	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr1	226572736	226572737	chr1:226572737:C:G	rs654318	C	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	226724494	226724495	chr1:226724495:C:A	rs3768411	C	A	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	226772673	226772674	chr1:226772674:C:T	rs77167946	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr1	226828442	226828443	chr1:226828443:G:A	rs543973313	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr1	226946759	226946760	chr1:226946760:T:A	rs79929620	T	A	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr1	226989359	226989360	chr1:226989360:T:C	rs12406714	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	226989367	226989368	chr1:226989368:G:A	rs116393726	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	227243505	227243506	chr1:227243506:A:C	rs775249708	A	C	a	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	227415372	227415373	chr1:227415373:T:C	rs1225217330	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	227944114	227944115	chr1:227944115:A:G	rs564944804	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	228003663	228003664	chr1:228003664:G:A	rs708111	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	228192017	228192018	chr1:228192018:A:G	rs79829758	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.236195972537098	-0.6725588067781227	TCACTGACAGTGT
chr1	228215814	228215815	chr1:228215815:G:A	rs576248804	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr1	228867541	228867542	chr1:228867542:A:T	rs76358892	A	T	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr1	228901515	228901516	chr1:228901516:A:C	rs6659427	A	C	A	Sox1.mouse_HMG_3	8	1	+	6.528106393559277	-0.3806483857559433	ACACTGTCATTGC
chr1	229029740	229029741	chr1:229029741:C:A	rs484947	C	A	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr1	229134337	229134338	chr1:229134338:G:C	rs9699522	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.328281750116487	-1.5744710372428572	TCAAAGCCATTCA
chr1	229172103	229172104	chr1:229172104:T:G	rs530525253	T	G	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr1	229472418	229472419	chr1:229472419:G:A	rs4925489	G	A	g	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr1	230105366	230105367	chr1:230105367:G:C	rs868287	G	C	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	230105376	230105377	chr1:230105377:A:C	rs868288	A	C	C	Sox1.mouse_HMG_3	5	1	+	5.515406818325419	0.9794193652260257	ACCATATCATTGA
chr1	230136823	230136824	chr1:230136824:A:G	rs139910054	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	230303234	230303235	chr1:230303235:A:T	rs542400734	A	T	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr1	230702368	230702369	chr1:230702369:A:G	rs11568046	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr1	230771344	230771345	chr1:230771345:T:C	rs12129824	T	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr1	230850797	230850798	chr1:230850798:C:T	rs1202562	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	230866485	230866486	chr1:230866486:C:T	rs919483317	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	230875445	230875446	chr1:230875446:T:C	rs41305721	T	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	231068867	231068868	chr1:231068868:A:C	rs6663912	A	C	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	231140831	231140832	chr1:231140832:A:G	rs6669723	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	231388010	231388011	chr1:231388011:G:A	rs2808592	G	A	A	Sox1.mouse_HMG_3	11	1	+	12.836477151926136	8.726636720940238	TCAATATCATTGT
chr1	231846524	231846525	chr1:231846525:G:A	rs11588799	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	232429349	232429350	chr1:232429350:C:T	rs116118731	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	232555959	232555960	chr1:232555960:G:A	rs140725963	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	232621310	232621311	chr1:232621311:T:G	rs147836436	T	G	T	Sox1.mouse_HMG_3	5	1	-	6.19884415700035	1.662856703900956	TCACTATCACTGA
chr1	232925903	232925904	chr1:232925904:C:T	rs4350151	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.691652528469586	2.059185037374393	TCAACTACATTGC
chr1	232996840	232996841	chr1:232996841:C:T	rs72759995	C	T	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	233218439	233218440	chr1:233218440:T:C	rs12729762	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	233241443	233241444	chr1:233241444:C:T	rs72750080	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	233241460	233241461	chr1:233241461:T:C	rs6665863	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	233459343	233459344	chr1:233459344:C:T	rs6424196	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr1	233641856	233641857	chr1:233641857:A:G	rs4649344	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	233800320	233800321	chr1:233800321:T:C	rs4567238	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr1	233874016	233874017	chr1:233874017:A:C	rs16859769	A	C	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	234281978	234281979	chr1:234281979:C:T	rs143023851	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr1	234371635	234371636	chr1:234371636:C:T	rs6698335	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr1	234428456	234428457	chr1:234428457:C:T	rs10797547	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	234428458	234428459	chr1:234428459:G:C	rs10797548	G	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	234460455	234460456	chr1:234460456:T:A	rs270511	T	A	T	Sox1.mouse_HMG_3	4	1	+	8.365187101798652	3.729974305994038	TCAATACCATTAG
chr1	234517498	234517499	chr1:234517499:C:T	rs6668373	C	T	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	234528307	234528308	chr1:234528308:C:G	rs189549513	C	G	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	234606378	234606379	chr1:234606379:T:C	rs918895178	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	234759346	234759347	chr1:234759347:C:G	rs78982717	C	G	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	234759382	234759383	chr1:234759383:T:C	rs114657346	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	234776923	234776924	chr1:234776924:G:T	chr1:234776924:G:T	G	T	G	Sox1.mouse_HMG_3	6	1	+	7.727541006446353	7.639425788114567	TCAATTGCACTGA
chr1	234782011	234782012	chr1:234782012:A:T	rs6698362	A	T	a	Sox1.mouse_HMG_3	9	1	-	5.45341598740343	-1.4334935203970782	TCCCTTTCATTGA
chr1	234845107	234845108	chr1:234845108:G:A	rs758772776	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	235045485	235045486	chr1:235045486:G:A	rs73110938	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr1	235045493	235045494	chr1:235045494:G:A	rs143033999	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	235048139	235048140	chr1:235048140:C:T	rs528244004	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	235057704	235057705	chr1:235057705:A:G	rs900793485	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr1	235076779	235076780	chr1:235076780:C:T	rs1007545801	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr1	235802913	235802914	chr1:235802914:C:G	chr1:235802914:C:G	C	G	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr1	235877761	235877762	chr1:235877762:C:T	rs6673218	C	T	T	Sox1.mouse_HMG_3	7	1	+	4.654263218267754	1.0217957271725608	ACAATTGCATCGC
chr1	235913393	235913394	chr1:235913394:A:T	rs10927030	A	T	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr1	236035630	236035631	chr1:236035631:T:C	rs34400720	T	C	-	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	236425378	236425379	chr1:236425379:T:C	rs665568	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	236425395	236425396	chr1:236425396:T:C	rs593156	T	C	C	Sox1.mouse_HMG_3	8	1	+	2.95818602571117	2.95818602571117	TCACTGCCTTTGC
chr1	236692334	236692335	chr1:236692335:A:T	rs35643176	A	T	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	236740490	236740491	chr1:236740491:C:T	rs2385494	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr1	236747836	236747837	chr1:236747837:A:G	rs10925211	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.092168184635874	0.4569553888312601	TGAATACCAGTGA
chr1	236905370	236905371	chr1:236905371:A:T	rs78629683	A	T	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	236905723	236905724	chr1:236905724:G:A	rs144767736	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr1	236978635	236978636	chr1:236978636:A:G	rs17610191	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr1	237008393	237008394	chr1:237008394:A:G	rs12086664	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr1	237109619	237109620	chr1:237109620:C:T	rs17669728	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	237310175	237310176	chr1:237310176:G:C	rs11582513	G	C	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr1	237391152	237391153	chr1:237391153:G:A	rs12082285	G	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr1	237618066	237618067	chr1:237618067:G:A	rs140691407	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	237747895	237747896	chr1:237747896:G:A	rs7527324	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	237996698	237996699	chr1:237996699:T:C	rs2487103	T	C	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr1	238371098	238371099	chr1:238371099:G:C	rs75352561	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr1	238469844	238469845	chr1:238469845:G:T	rs3795440	G	T	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	238501469	238501470	chr1:238501470:G:A	rs10802697	G	A	g	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr1	238625050	238625051	chr1:238625051:G:A	rs1393642	G	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	238952457	238952458	chr1:238952458:T:C	rs13374113	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr1	239213160	239213161	chr1:239213161:A:G	rs539626261	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.741669671347038	-1.0593574905699668	TCAATTCCATTTT
chr1	239405590	239405591	chr1:239405591:A:G	rs72754656	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.793223014223576	-1.0078041476934296	TCAATTACATTTT
chr1	239675483	239675484	chr1:239675484:T:C	rs73109156	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr1	239722509	239722510	chr1:239722510:C:A	rs1431721	C	A	C	Sox1.mouse_HMG_3	12	1	+	7.792428059065806	10.291645962883655	TTAATATCATTGC
chr1	239961963	239961964	chr1:239961964:C:A	rs12408878	C	A	c	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	240054395	240054396	chr1:240054396:C:G	rs75280320	C	G	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	240100251	240100252	chr1:240100252:C:G	rs11589947	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr1	240290327	240290328	chr1:240290328:G:A	rs10754697	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr1	240327415	240327416	chr1:240327416:A:G	rs10495464	A	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	240455414	240455415	chr1:240455415:A:G	rs983962055	A	G	A	Sox1.mouse_HMG_3	0	1	+	5.482573698206654	1.4561511524700121	ACACTACAATTGA
chr1	240527130	240527131	chr1:240527131:C:T	rs12034261	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	240539759	240539760	chr1:240539760:C:T	rs80285190	C	T	C	Sox1.mouse_HMG_3	11	1	-	10.489574851809797	6.379734420823899	ACAATAACATTGC
chr1	241081603	241081604	chr1:241081604:T:C	rs79570853	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr1	241108450	241108451	chr1:241108451:A:C	rs114938971	A	C	A	Sox1.mouse_HMG_3	2	1	+	7.633476318970606	0.7247215396553863	TTAATTACATTGC
chr1	241842041	241842042	chr1:241842042:G:T	rs17391502	G	T	G	Sox1.mouse_HMG_3	11	1	+	5.2041394745287075	-1.6801629230786514	TCTATTTCATTGT
chr1	242219714	242219715	chr1:242219715:C:A	rs1609954	C	A	A	Sox1.mouse_HMG_3	1	1	+	5.691652528469586	-1.2111002588897584	TCAATTACATAGC
chr1	242242543	242242544	chr1:242242544:G:A	rs383373	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr1	242811441	242811442	chr1:242811442:C:T	rs12131878	C	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr1	243484194	243484195	chr1:243484195:A:G	rs10927026	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	243505966	243505967	chr1:243505967:A:G	rs137944665	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	243939512	243939513	chr1:243939513:C:G	rs148557837	C	G	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr1	244220349	244220350	chr1:244220350:C:T	rs73117753	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr1	244294439	244294440	chr1:244294440:C:T	rs80311739	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	244299306	244299307	chr1:244299307:G:T	rs372904952	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr1	244327519	244327520	chr1:244327520:T:G	rs35045024	T	G	T	Sox1.mouse_HMG_3	6	1	-	7.681780559302554	7.630227216426016	TCAAGGACATTGA
chr1	244347134	244347135	chr1:244347135:G:A	rs900895	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr1	244360201	244360202	chr1:244360202:A:G	rs10927210	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr1	244838499	244838500	chr1:244838500:A:G	rs78655555	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.617580516599855	0.730671008799346	TCTATTTCATTGA
chr1	244869679	244869680	chr1:244869680:G:A	rs143859877	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr1	244893510	244893511	chr1:244893511:A:G	rs75575377	A	G	A	Sox1.mouse_HMG_3	6	1	-	4.968778496126408	5.48185631123688	TCACTGTCATTTA
chr1	244972255	244972256	chr1:244972256:T:A	rs115166951	T	A	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr1	245029169	245029170	chr1:245029170:T:C	rs1979568	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.638520045746608	-2.162507116170396	ACAATGCCATTCC
chr1	245277948	245277949	chr1:245277949:G:A	rs9660396	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr1	245293287	245293288	chr1:245293288:T:C	rs4658744	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr1	245454586	245454587	chr1:245454587:T:A	rs10924201	T	A	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr1	245585693	245585694	chr1:245585694:T:C	rs71636576	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr1	245878113	245878114	chr1:245878114:C:T	rs12038841	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr1	245957212	245957213	chr1:245957213:G:A	rs10924403	G	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr1	245990836	245990837	chr1:245990837:T:C	rs10924427	T	C	C	Sox1.mouse_HMG_3	9	1	+	4.936838211122424	-1.9500712966780838	TTAAAGCCATTGA
chr1	245997309	245997310	chr1:245997310:A:G	rs36107675	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr1	246297949	246297950	chr1:246297950:G:A	rs12039645	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	246318635	246318636	chr1:246318636:C:T	rs6687770	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr1	246446053	246446054	chr1:246446054:T:C	rs1890162	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr1	246503693	246503694	chr1:246503694:G:A	rs10924758	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr1	246588554	246588555	chr1:246588555:A:G	rs74495912	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.1739038977841325	-1.7261921238305147	TCTATGACATTGC
chr1	247406918	247406919	chr1:247406919:T:C	rs35020138	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr1	247406924	247406925	chr1:247406925:T:C	rs72771983	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr1	247473603	247473604	chr1:247473604:C:T	rs4925674	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr1	247497201	247497202	chr1:247497202:A:G	rs72773758	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr1	247497233	247497234	chr1:247497234:T:C	rs74152612	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr1	248569205	248569206	chr1:248569206:G:A	rs28765223	G	A	.	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr1	248858434	248858435	chr1:248858435:A:G	rs548744358	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	382149	382150	chr10:382150:C:G	rs4881199	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	493366	493367	chr10:493367:A:C	rs76338795	A	C	A	Sox1.mouse_HMG_3	6	1	-	3.8291809249923427	3.9172961433241293	TCAATGTCATGGG
chr10	718845	718846	chr10:718846:G:T	rs11253340	G	T	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	722784	722785	chr10:722785:G:A	rs55818232	G	A	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	771430	771431	chr10:771431:G:A	rs114393579	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr10	787537	787538	chr10:787538:G:A	rs74578197	G	A	g	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr10	873091	873092	chr10:873092:G:C	rs34885925	G	C	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	1457279	1457280	chr10:1457280:C:T	rs2676767	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	1457288	1457289	chr10:1457289:C:T	rs61255727	C	T	C	Sox1.mouse_HMG_3	3	1	+	3.872978861940038	-0.763883770780543	ACACGACCATTGA
chr10	1582580	1582581	chr10:1582581:T:C	rs938695	T	C	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr10	1601886	1601887	chr10:1601887:G:A	rs76560162	G	A	G	Sox1.mouse_HMG_3	6	1	+	3.850641474431168	4.3271574140863915	GCAAAAGCATTGA
chr10	1615419	1615420	chr10:1615420:G:A	rs11250667	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.2317280092217775	1.1218875782358788	TCACTGCCATCGC
chr10	1615424	1615425	chr10:1615425:T:G	rs1874997	T	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr10	2227738	2227739	chr10:2227739:C:T	rs7919624	C	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	2367190	2367191	chr10:2367191:A:G	rs17158213	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	2384664	2384665	chr10:2384665:C:T	rs826497	C	T	c	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	2592611	2592612	chr10:2592612:C:T	rs6601756	C	T	c	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr10	2658988	2658989	chr10:2658989:G:A	rs1413759	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	2681300	2681301	chr10:2681301:G:A	rs17182743	G	A	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	2819859	2819860	chr10:2819860:A:G	rs7906621	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	3076887	3076888	chr10:3076888:G:A	rs12775265	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr10	3081240	3081241	chr10:3081241:T:C	rs882849	T	C	t	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr10	3094637	3094638	chr10:3094638:C:T	rs78236406	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr10	3094639	3094640	chr10:3094640:C:T	rs73571283	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	3186412	3186413	chr10:3186413:A:C	rs4881124	A	C	C	Sox1.mouse_HMG_3	2	1	+	6.0478767060731045	-0.8608780732421155	TCAAAATCATTCA
chr10	3264495	3264496	chr10:3264496:T:A	rs4881133	T	A	A	Sox1.mouse_HMG_3	3	1	-	8.024919857964669	1.2238926960476637	TCAATTACATTCC
chr10	3451904	3451905	chr10:3451905:C:T	rs10904044	C	T	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr10	3735262	3735263	chr10:3735263:C:T	rs114429489	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr10	3776854	3776855	chr10:3776855:G:A	rs114433167	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr10	3776993	3776994	chr10:3776994:T:C	rs79041010	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	3805110	3805111	chr10:3805111:C:T	rs61829731	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	4103054	4103055	chr10:4103055:A:G	chr10:4103055:A:G	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	4234961	4234962	chr10:4234962:G:A	rs74114685	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	4241501	4241502	chr10:4241502:T:C	rs116500306	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.850604268564787	-0.950422893352221	TCAATATCATAGC
chr10	4281943	4281944	chr10:4281944:T:A	rs4881312	T	A	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	4310505	4310506	chr10:4310506:G:T	rs10904225	G	T	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	4412272	4412273	chr10:4412273:G:T	rs1751306	G	T	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	4649777	4649778	chr10:4649778:A:G	rs11252639	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr10	4658775	4658776	chr10:4658776:A:G	rs10508287	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	4770961	4770962	chr10:4770962:A:G	rs11818567	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	4813282	4813283	chr10:4813283:T:C	rs2924281	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr10	4848975	4848976	chr10:4848976:C:T	rs1993181	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr10	5009339	5009340	chr10:5009340:G:A	rs1937863	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr10	5009378	5009379	chr10:5009379:C:A	rs113767262	C	A	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	5034174	5034175	chr10:5034175:C:T	rs12416161	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	5090953	5090954	chr10:5090954:C:T	rs11252933	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	5096179	5096180	chr10:5096180:T:G	rs2801882	T	G	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr10	5116318	5116319	chr10:5116319:G:A	rs11813521	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	5291182	5291183	chr10:5291183:G:C	rs12771527	G	C	g	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr10	5382763	5382764	chr10:5382764:A:G	rs11253143	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	5447222	5447223	chr10:5447223:G:T	rs60426135	G	T	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	5501382	5501383	chr10:5501383:T:C	rs12412562	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	5588167	5588168	chr10:5588168:T:C	rs4075309	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	5594460	5594461	chr10:5594461:A:G	rs58098457	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	5594470	5594471	chr10:5594471:A:G	rs28495843	A	G	a	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	5667187	5667188	chr10:5667188:A:T	rs3814200	A	T	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr10	5882258	5882259	chr10:5882259:G:A	rs603780	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	6050091	6050092	chr10:6050092:C:T	rs10905668	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	6396889	6396890	chr10:6396890:A:C	rs7916702	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr10	6491914	6491915	chr10:6491915:A:G	rs3815975	A	G	A	Sox1.mouse_HMG_3	2	1	+	6.701998473637765	-0.20675630567745418	ACACTGGCATTGT
chr10	6491937	6491938	chr10:6491938:C:T	rs3815974	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr10	6669228	6669229	chr10:6669229:C:G	rs11813112	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	6766744	6766745	chr10:6766745:G:C	chr10:6766745:G:C	G	C	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr10	6766750	6766751	chr10:6766751:G:A	rs4747303	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	6928229	6928230	chr10:6928230:G:A	rs2387749	G	A	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr10	7090962	7090963	chr10:7090963:G:A	rs1192347530	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr10	7179975	7179976	chr10:7179976:A:G	rs2762617	A	G	G	Sox1.mouse_HMG_3	4	1	-	2.966844783411744	-3.9332512382029043	TCACTGCCATGGC
chr10	7383823	7383824	chr10:7383824:T:C	rs4748900	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	7409602	7409603	chr10:7409603:C:T	rs548025038	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	7494344	7494345	chr10:7494345:C:T	rs2388139	C	T	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	7782251	7782252	chr10:7782252:A:G	rs10905231	A	G	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	7787474	7787475	chr10:7787475:A:C	rs2853763	A	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	8035272	8035273	chr10:8035273:C:G	rs115124036	C	G	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	8086347	8086348	chr10:8086348:T:A	rs794659	T	A	T	Sox1.mouse_HMG_3	8	1	-	6.497375824943321	-0.41137895437189953	CCAATACCATTGT
chr10	8367474	8367475	chr10:8367475:A:G	rs149110969	A	G	a	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	8405184	8405185	chr10:8405185:G:C	rs1338055	G	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	8405186	8405187	chr10:8405187:C:A	rs2065991	C	A	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	8415865	8415866	chr10:8415866:A:G	rs1572597	A	G	G	Sox1.mouse_HMG_3	2	1	+	4.856023962945912	-2.052730816369308	ACAAGGACATTGA
chr10	8420475	8420476	chr10:8420476:T:C	rs2993385	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr10	8677848	8677849	chr10:8677849:C:T	rs11255824	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr10	8712982	8712983	chr10:8712983:G:A	rs17144374	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	8778892	8778893	chr10:8778893:G:A	rs115447626	G	A	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	9026688	9026689	chr10:9026689:G:C	rs1149912	G	C	C	Sox1.mouse_HMG_3	11	1	+	4.9443261144185495	0.37749742229898553	TCTCTGTCATTGA
chr10	9038062	9038063	chr10:9038063:G:C	rs1891532	G	C	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	9066354	9066355	chr10:9066355:T:C	rs10795689	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	9110741	9110742	chr10:9110742:T:C	rs17364530	T	C	T	Sox1.mouse_HMG_3	4	1	+	8.780386141087487	1.8802901194728405	ACAATGGCATTGC
chr10	9188550	9188551	chr10:9188551:A:G	rs7094402	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.520036112129844	-2.2809910497871617	TCAATTCTACTGA
chr10	9357724	9357725	chr10:9357725:A:T	rs146035117	A	T	a	Sox1.mouse_HMG_3	9	1	-	7.568308644547461	0.6813991367469536	TTAATAACATTGG
chr10	9628037	9628038	chr10:9628038:A:G	rs1338724	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	9898809	9898810	chr10:9898810:G:A	rs11256374	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	9898812	9898813	chr10:9898813:G:A	rs11256375	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.953587398710406	6.039364260457109	ACAATCACATTGC
chr10	9955086	9955087	chr10:9955087:C:A	rs2225990	C	A	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	10045344	10045345	chr10:10045345:G:T	rs79249198	G	T	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr10	10094202	10094203	chr10:10094203:C:T	rs12264789	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	10096205	10096206	chr10:10096206:T:C	rs11256490	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr10	10402312	10402313	chr10:10402313:A:G	rs1891399	A	G	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	10736002	10736003	chr10:10736003:A:G	rs11256803	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	10887491	10887492	chr10:10887492:G:A	rs78716408	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	11157307	11157308	chr10:11157308:G:A	rs73575699	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	11181982	11181983	chr10:11181983:T:C	rs117944575	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	11190615	11190616	chr10:11190616:T:A	rs622981	T	A	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	11202636	11202637	chr10:11202637:G:A	rs752379	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	11396734	11396735	chr10:11396735:C:G	rs72777625	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	11397902	11397903	chr10:11397903:T:C	rs3847432	T	C	T	Sox1.mouse_HMG_3	2	1	-	7.7143544926322125	0.8055997133169914	TCAAGTGCATTGA
chr10	11517430	11517431	chr10:11517431:G:A	rs12572295	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	11551717	11551718	chr10:11551718:A:G	rs11257165	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	11631543	11631544	chr10:11631544:G:A	rs12415252	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	11704422	11704423	chr10:11704423:T:C	rs11257262	T	C	C	Sox1.mouse_HMG_3	9	1	+	3.410766981973477	-3.47614252582703	TCACTACCATGGG
chr10	11730854	11730855	chr10:11730855:C:T	rs1324649	C	T	C	Sox1.mouse_HMG_3	11	1	-	3.5748980319574657	-0.5349423990284325	TCACTTCCACTGT
chr10	12057023	12057024	chr10:12057024:A:G	rs11257506	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	12057051	12057052	chr10:12057052:A:C	rs12766968	A	C	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	12203601	12203602	chr10:12203602:A:G	rs938991	A	G	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	12482637	12482638	chr10:12482638:G:A	rs17491614	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	12490545	12490546	chr10:12490546:C:T	rs2478973	C	T	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	12498800	12498801	chr10:12498801:C:T	rs11257832	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	12649576	12649577	chr10:12649577:T:C	rs17495691	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	12827000	12827001	chr10:12827001:A:G	rs1644392	A	G	A	Sox1.mouse_HMG_3	0	1	-	3.794065837209233	-3.0581133048840523	TCAAAAGCCTTGA
chr10	12838342	12838343	chr10:12838343:G:T	rs61852201	G	T	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	12886675	12886676	chr10:12886676:T:A	rs34826516	T	A	T	Sox1.mouse_HMG_3	8	1	-	5.228591856236568	-1.6801629230786523	TCAATTTCATTTT
chr10	12977512	12977513	chr10:12977513:T:C	rs662141	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	13241806	13241807	chr10:13241807:A:G	rs17152990	A	G	A	Sox1.mouse_HMG_3	9	1	-	12.116882195969517	5.22997268816901	TCAATGCCATTGT
chr10	13339159	13339160	chr10:13339160:T:C	rs3781087	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr10	13674799	13674800	chr10:13674800:A:G	rs77861426	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr10	13698455	13698456	chr10:13698456:C:G	rs3814664	C	G	G	Sox1.mouse_HMG_3	1	1	+	4.144131199262436	-2.7586215880969096	TCAATCACATCGC
chr10	13698465	13698466	chr10:13698466:G:A	rs78103027	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.144131199262436	0.03429076827653699	TCAATCACATCGC
chr10	13830628	13830629	chr10:13830629:T:C	rs80207127	T	C	C	Sox1.mouse_HMG_3	9	1	-	4.719233229643624	7.838067700331598	TCAATGGCAATGC
chr10	13883162	13883163	chr10:13883163:T:C	rs41336145	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.437339657674865	-0.19787313812974827	TCAGTTTCATTGG
chr10	13908780	13908781	chr10:13908781:C:T	rs2698132	C	T	C	Sox1.mouse_HMG_3	12	1	+	6.037788346594212	6.123565208340915	TCAGTAGCATTGC
chr10	14012345	14012346	chr10:14012346:C:T	rs2457839	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.899551537641425	0.7897111066555276	ACATTTTCATTGA
chr10	14017438	14017439	chr10:14017439:G:A	rs73591211	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	14409500	14409501	chr10:14409501:T:C	rs10906669	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.2041394745287075	-1.5968876873882987	TCAATTTCTTTGT
chr10	14410480	14410481	chr10:14410481:G:A	rs2480536	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr10	14507288	14507289	chr10:14507289:C:G	rs11259145	C	G	G	Sox1.mouse_HMG_3	11	1	-	4.292427048379169	-0.27440164374039444	TCAATAACAACGA
chr10	14507316	14507317	chr10:14507317:C:A	rs187792608	C	A	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	14660694	14660695	chr10:14660695:A:T	rs78275091	A	T	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	14684505	14684506	chr10:14684506:G:A	rs114562619	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	14995671	14995672	chr10:14995672:G:T	rs4333919	G	T	-	Sox1.mouse_HMG_3	7	1	-	9.136193121317435	3.845691935969407	ACAATATCATTGG
chr10	15122883	15122884	chr10:15122884:C:A	rs7077202	C	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	15149147	15149148	chr10:15149148:C:T	rs61844188	C	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr10	15324806	15324807	chr10:15324807:T:A	rs374976522	T	A	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	15689185	15689186	chr10:15689186:G:A	rs4748194	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.627974418365065	6.104490358020287	ACAATAGCATTTA
chr10	15739971	15739972	chr10:15739972:C:A	rs6602053	C	A	-	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	15789755	15789756	chr10:15789756:C:T	rs7923731	C	T	T	Sox1.mouse_HMG_3	5	1	-	5.351665455783365	6.584338226850452	TCACTGACATTCC
chr10	15850682	15850683	chr10:15850683:G:T	rs111580233	G	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr10	16280429	16280430	chr10:16280430:A:G	rs10508507	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.156960379315384	0.27005087151487683	TTAATTGCATTGC
chr10	16656600	16656601	chr10:16656601:T:G	rs7089460	T	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	16786184	16786185	chr10:16786185:T:A	rs78558872	T	A	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	16949590	16949591	chr10:16949591:T:A	rs7901441	T	A	a	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	16949590	16949591	chr10:16949591:T:C	chr10:16949591:T:C	T	C	a	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	16962559	16962560	chr10:16962560:G:T	rs1687714	G	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr10	16966233	16966234	chr10:16966234:G:A	rs144705361	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr10	16969263	16969264	chr10:16969264:T:C	rs11593686	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	16969298	16969299	chr10:16969299:C:T	rs1828624	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	16999759	16999760	chr10:16999760:T:C	rs7921270	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	17001817	17001818	chr10:17001818:T:G	rs3847368	T	G	T	Sox1.mouse_HMG_3	6	1	+	8.003053822858028	8.091169041189815	TCAATTTCATTAT
chr10	17059498	17059499	chr10:17059499:C:A	rs151235084	C	A	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	17110994	17110995	chr10:17110995:G:A	rs1801223	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr10	17171483	17171484	chr10:17171484:T:G	rs72775072	T	G	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	17237517	17237518	chr10:17237518:C:T	rs3249	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.750402790762509	1.1179352996673169	TGAATACCATTAA
chr10	17255555	17255556	chr10:17255556:C:T	rs10795467	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	17435507	17435508	chr10:17435508:A:G	rs4748376	A	G	g	Sox1.mouse_HMG_3	8	1	+	5.617079482442874	-1.2916752968723466	ATAATAACATTGT
chr10	17646185	17646186	chr10:17646186:G:C	chr10:17646186:G:C	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	17653772	17653773	chr10:17653773:A:G	rs12413908	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.232579798362158	-1.568447363554848	TCAATGCCATTTT
chr10	17673462	17673463	chr10:17673463:C:T	rs116343068	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	17830791	17830792	chr10:17830792:T:C	rs547593586	T	C	T	Sox1.mouse_HMG_3	5	1	+	5.230930212821651	1.4185256578044663	TCAATTGCATTTC
chr10	17874209	17874210	chr10:17874210:G:C	rs368683008	G	C	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr10	18045591	18045592	chr10:18045592:A:G	rs2488136	A	G	G	Sox1.mouse_HMG_3	6	1	+	7.959752183541525	7.483236243886299	TCAATAACATTCG
chr10	18060297	18060298	chr10:18060298:T:G	rs80269453	T	G	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	18500794	18500795	chr10:18500795:T:G	rs4485000	T	G	T	Sox1.mouse_HMG_3	4	1	-	6.592980185538554	4.328096959728521	TCAAAAGCATTAA
chr10	18607888	18607889	chr10:18607889:C:G	chr10:18607889:C:G	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	18920982	18920983	chr10:18920983:A:G	rs192721803	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.590725135177191	-1.2103020267398157	TCAATACCATTTG
chr10	19188659	19188660	chr10:19188660:A:G	rs72792611	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	19660302	19660303	chr10:19660303:A:T	rs1326978	A	T	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	19988153	19988154	chr10:19988154:C:T	rs4311960	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr10	20175974	20175975	chr10:20175975:G:A	rs11593311	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr10	20494783	20494784	chr10:20494784:G:A	rs10828064	G	A	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	20524005	20524006	chr10:20524006:C:G	rs7912427	C	G	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr10	20891066	20891067	chr10:20891067:T:C	rs3791204	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.050622010782526	0.24959484886551975	TCAATATTATTCA
chr10	21340744	21340745	chr10:21340745:G:T	rs12252792	G	T	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	22347140	22347141	chr10:22347141:T:C	rs80180421	T	C	.	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	22460388	22460389	chr10:22460389:C:G	rs1463264398	C	G	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	22483353	22483354	chr10:22483354:C:G	rs61377954	C	G	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	22609087	22609088	chr10:22609088:G:A	rs2559527	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	23291931	23291932	chr10:23291932:A:T	rs146019954	A	T	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr10	23445808	23445809	chr10:23445809:A:G	rs7920535	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr10	23482297	23482298	chr10:23482298:A:G	rs72771426	A	G	A	Sox1.mouse_HMG_3	9	1	-	3.872978861940038	-3.0139306458604698	ACACCACCATTGA
chr10	23524525	23524526	chr10:23524526:C:T	rs7898730	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	24153677	24153678	chr10:24153678:A:C	rs74588276	A	C	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr10	24463714	24463715	chr10:24463715:A:G	rs16924790	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.016803445332714	-0.8919513339825056	ACAATACTATTGG
chr10	24644059	24644060	chr10:24644060:T:C	rs773407288	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	24826205	24826206	chr10:24826206:A:G	rs141010513	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr10	24902077	24902078	chr10:24902078:C:T	rs570737333	C	T	C	Sox1.mouse_HMG_3	5	1	-	4.488243240745808	5.720916011812896	TCACTGCCAGTAA
chr10	24951652	24951653	chr10:24951653:A:G	rs890942217	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.69873545829668	-0.21001932101854037	TCACCACCATTGA
chr10	25707218	25707219	chr10:25707219:G:A	rs77936140	G	A	G	Sox1.mouse_HMG_3	1	1	-	7.474279724604926	2.5160074934913026	TCAATGCCAGTGG
chr10	25865535	25865536	chr10:25865536:G:T	rs10508706	G	T	G	Sox1.mouse_HMG_3	7	1	-	5.053194938358859	-0.2373062469891718	TCAATATCCTTGG
chr10	25875152	25875153	chr10:25875153:C:T	rs11014813	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	25875153	25875154	chr10:25875154:A:G	rs2367985	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr10	25875181	25875182	chr10:25875182:A:T	rs11014814	A	T	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr10	25875190	25875191	chr10:25875191:T:C	rs2367984	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	25963629	25963630	chr10:25963630:T:C	rs2176939	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr10	26087163	26087164	chr10:26087164:A:G	rs7906251	A	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	26136471	26136472	chr10:26136472:C:T	rs79664328	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr10	26372582	26372583	chr10:26372583:A:G	rs2105059	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	26445892	26445893	chr10:26445893:G:C	rs10764616	G	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	26586136	26586137	chr10:26586137:T:C	rs4749165	T	C	t	Sox1.mouse_HMG_3	0	1	-	5.3778461163499625	1.3514235706133193	ACAAAAGCATTGC
chr10	26612293	26612294	chr10:26612294:A:C	rs7075584	A	C	a	Sox1.mouse_HMG_3	2	1	+	5.755658509784263	-1.1530962695309568	TTAATCTCATTGA
chr10	26684836	26684837	chr10:26684837:A:G	rs146111209	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	26706051	26706052	chr10:26706052:C:G	rs2489581	C	G	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	26708113	26708114	chr10:26708114:T:C	rs11015239	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	27291443	27291444	chr10:27291444:A:G	rs11015650	A	G	.	Sox1.mouse_HMG_3	5	1	+	5.141310156690643	3.9086373856235563	TCAATAGCCTTGG
chr10	27611685	27611686	chr10:27611686:G:A	rs10741138	G	A	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	27696345	27696346	chr10:27696346:A:G	rs11015952	A	G	G	Sox1.mouse_HMG_3	8	1	+	4.395541517771441	-2.5132132615437786	CCAATAACATTCA
chr10	28172269	28172270	chr10:28172270:T:C	rs7092972	T	C	t	Sox1.mouse_HMG_3	9	1	+	5.21655601966968	-1.6703534881308284	ACAAATACATTGT
chr10	28320531	28320532	chr10:28320532:G:A	rs786393	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	28334552	28334553	chr10:28334553:G:T	rs191523151	G	T	G	Sox1.mouse_HMG_3	5	1	-	4.37846587727025	8.914453330369643	TCAAGCACATTGA
chr10	28432171	28432172	chr10:28432172:A:G	rs11007105	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.130658331710325	1.3296311697933183	TCTATTCCATTGA
chr10	28472212	28472213	chr10:28472213:A:G	rs2616620	A	G	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	28872206	28872207	chr10:28872207:A:T	rs1632569	A	T	a	Sox1.mouse_HMG_3	10	1	-	4.864535126901835	-2.0355608947128134	TCAATTCCACTGG
chr10	28974968	28974969	chr10:28974969:G:C	rs11594011	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.902034055833868	-1.0007187315254773	ACAATCCCATTGC
chr10	28995039	28995040	chr10:28995040:A:G	rs76921075	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	29158933	29158934	chr10:29158934:T:A	rs55953667	T	A	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr10	29184645	29184646	chr10:29184646:A:G	rs16929852	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	29189315	29189316	chr10:29189316:C:T	rs10826578	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	29214627	29214628	chr10:29214628:C:G	rs7914673	C	G	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	29240208	29240209	chr10:29240209:A:G	rs10826582	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	29314846	29314847	chr10:29314847:C:T	rs74131350	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr10	29410444	29410445	chr10:29410445:A:G	rs193292627	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.725876047339751	-1.161033460460757	TCAACTCCATTGT
chr10	29515986	29515987	chr10:29515987:C:T	rs11007637	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	29643307	29643308	chr10:29643308:T:C	rs11007680	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	29731988	29731989	chr10:29731989:C:A	rs7908314	C	A	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	29860723	29860724	chr10:29860724:A:G	rs16930687	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	29964320	29964321	chr10:29964321:A:T	rs35495115	A	T	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	30057903	30057904	chr10:30057904:C:T	rs2478832	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr10	30062220	30062221	chr10:30062221:T:C	rs2505131	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.617950221204612	-2.183076940712393	TCAATCCCATTAC
chr10	30078546	30078547	chr10:30078547:T:C	rs3847403	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr10	30089933	30089934	chr10:30089934:A:G	rs7078436	A	G	G	Sox1.mouse_HMG_3	8	1	+	4.950818835485595	-1.9579359438296253	CCAATTACATTGG
chr10	30145045	30145046	chr10:30145046:G:A	rs56129045	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.230930212821651	1.5984627217264582	TCAATTGCATTTC
chr10	30241204	30241205	chr10:30241205:A:T	rs2948891	A	T	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr10	30253135	30253136	chr10:30253136:G:A	rs1758935	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	30383264	30383265	chr10:30383265:T:A	rs2480284	T	A	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	30442481	30442482	chr10:30442482:A:G	rs7071698	A	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr10	30525780	30525781	chr10:30525781:T:C	rs79358980	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	30525803	30525804	chr10:30525804:T:C	rs117279900	T	C	T	Sox1.mouse_HMG_3	5	1	-	5.3501577619717064	4.117484990904618	TCAATATTAGTGC
chr10	30542114	30542115	chr10:30542115:A:G	rs75727883	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	30542524	30542525	chr10:30542525:G:A	rs906231	G	A	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	30558077	30558078	chr10:30558078:T:C	rs4749568	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	30558094	30558095	chr10:30558095:A:C	rs145311269	A	C	A	Sox1.mouse_HMG_3	10	1	-	12.082658677099351	5.1825626554847055	TCAATGACATTGC
chr10	30720532	30720533	chr10:30720533:C:T	rs9651362	C	T	c	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	31612192	31612193	chr10:31612193:G:A	rs11008545	G	A	g	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr10	31646710	31646711	chr10:31646711:A:G	rs112196588	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.007041764983619	1.2060146030666132	TCAATGCCATTAT
chr10	31648742	31648743	chr10:31648743:C:T	rs796149	C	T	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	31679204	31679205	chr10:31679205:A:G	rs796129	A	G	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	32714543	32714544	chr10:32714544:A:G	rs12261061	A	G	A	Sox1.mouse_HMG_3	0	1	-	4.8751495161281415	-1.9770296259651423	TCACTGGCATTCC
chr10	32922298	32922299	chr10:32922299:T:G	rs2230395	T	G	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr10	32963165	32963166	chr10:32963166:T:G	rs77677848	T	G	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	33010861	33010862	chr10:33010862:C:T	rs116057332	C	T	C	Sox1.mouse_HMG_3	6	1	-	6.037788346594212	6.514304286249436	TCAGTAGCATTGC
chr10	33117558	33117559	chr10:33117559:C:T	rs149424212	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	33175017	33175018	chr10:33175018:C:T	rs73260357	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.329354117061543	1.6968866259663504	ACAATTCCATTTA
chr10	33175025	33175026	chr10:33175026:T:C	rs78809803	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr10	33233328	33233329	chr10:33233329:C:T	rs77828306	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	33233924	33233925	chr10:33233925:T:C	rs75318989	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.6095240286130785	-1.2992307507021414	AGAATAGCATTGA
chr10	33235399	33235400	chr10:33235400:G:A	rs112982326	G	A	G	Sox1.mouse_HMG_3	11	1	+	11.099613576093477	6.989773145107579	TCACTACCATTGC
chr10	33254937	33254938	chr10:33254938:G:A	rs1537174	G	A	g	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	33254940	33254941	chr10:33254941:G:A	rs1319014	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	33304893	33304894	chr10:33304894:A:G	rs11597915	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	33602903	33602904	chr10:33602904:C:A	rs11009465	C	A	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	33661595	33661596	chr10:33661596:G:A	rs117937609	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	33735861	33735862	chr10:33735862:T:A	rs73267245	T	A	T	Sox1.mouse_HMG_3	10	1	+	7.468868743604187	0.5687727219895387	TCACTAACAGTGT
chr10	33739206	33739207	chr10:33739207:A:T	rs59724621	A	T	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr10	33794722	33794723	chr10:33794723:G:A	rs2777518	G	A	g	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	33802854	33802855	chr10:33802855:A:G	rs10763956	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.206477831113791	-1.6936181905008574	TCAATTGCCTTGC
chr10	33803498	33803499	chr10:33803499:A:T	rs11009520	A	T	A	Sox1.mouse_HMG_3	0	1	-	6.181805531897757	3.3560489355411134	TTAATATCATTAA
chr10	33804797	33804798	chr10:33804798:G:A	rs78509871	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	33871312	33871313	chr10:33871313:C:T	rs16934885	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	33925157	33925158	chr10:33925158:T:C	rs1154683	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr10	33928322	33928323	chr10:33928323:A:G	rs1002387	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr10	33928336	33928337	chr10:33928337:T:C	rs1002386	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.329612040276652	-2.5572974675238562	TCCATTTCATTGG
chr10	34002830	34002831	chr10:34002831:T:C	rs224701	T	C	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr10	34003793	34003794	chr10:34003794:T:G	rs224703	T	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr10	34025229	34025230	chr10:34025230:G:C	rs73259096	G	C	g	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	34045830	34045831	chr10:34045831:G:A	rs151296196	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	34263092	34263093	chr10:34263093:T:G	rs6481895	T	G	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr10	34263132	34263133	chr10:34263133:T:G	rs7901148	T	G	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr10	34733289	34733290	chr10:34733290:T:C	rs149691167	T	C	T	Sox1.mouse_HMG_3	9	1	-	4.9661713859332615	8.085005856621235	TCACTGTCAATGA
chr10	34968957	34968958	chr10:34968958:G:A	rs4007288	G	A	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	35070546	35070547	chr10:35070547:A:G	rs12240347	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	35126828	35126829	chr10:35126829:C:G	rs779460175	C	G	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	35126854	35126855	chr10:35126855:T:C	rs568310769	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	35128273	35128274	chr10:35128274:C:A	rs7902166	C	A	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	35149460	35149461	chr10:35149461:T:C	rs931694831	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.246226120405199	-1.5548010415118054	TCAATACTATTTA
chr10	35185755	35185756	chr10:35185756:G:T	chr10:35185756:G:T	G	T	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr10	35185770	35185771	chr10:35185771:T:C	rs4934540	T	C	C	Sox1.mouse_HMG_3	4	1	+	4.605918458013345	-2.2941775636013015	TCAGTTCTATTGA
chr10	35212509	35212510	chr10:35212510:A:G	rs2295415	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr10	35252632	35252633	chr10:35252633:T:A	rs11010146	T	A	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	35253828	35253829	chr10:35253829:T:C	rs12249814	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	35267609	35267610	chr10:35267610:T:C	rs142460001	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.927722372610916	-0.8733047893060906	TCTATATCATTGT
chr10	35410795	35410796	chr10:35410796:A:T	rs4934751	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr10	35938172	35938173	chr10:35938173:T:C	rs2696309	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr10	36021821	36021822	chr10:36021822:G:T	rs10508824	G	T	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	36089969	36089970	chr10:36089970:C:T	rs11010430	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr10	36118931	36118932	chr10:36118932:C:G	rs4934794	C	G	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	36441450	36441451	chr10:36441451:C:A	rs74134822	C	A	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr10	36602661	36602662	chr10:36602662:G:A	rs12263586	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr10	36606355	36606356	chr10:36606356:C:T	rs10827651	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.22997268816901	4.716894873058539	TCAATGCCACTGT
chr10	36628211	36628212	chr10:36628212:A:C	rs10827670	A	C	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr10	37566620	37566621	chr10:37566621:C:G	rs545748736	C	G	c	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	37619135	37619136	chr10:37619136:A:G	rs7086522	A	G	a	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	37702139	37702140	chr10:37702140:C:T	rs67598405	C	T	.	Sox1.mouse_HMG_3	7	1	+	4.3712420522983635	0.7387745612031711	TCAACTCCAGTGA
chr10	37702152	37702153	chr10:37702153:C:T	rs4934899	C	T	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr10	38027060	38027061	chr10:38027061:G:A	rs12269398	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.384239389113022	5.860755328768246	TCACTTGCATTCC
chr10	38496002	38496003	chr10:38496003:G:T	rs199594070	G	T	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	38496003	38496004	chr10:38496004:A:T	rs200705568	A	T	.	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr10	38506238	38506239	chr10:38506239:A:T	rs111216951	A	T	.	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr10	38526759	38526760	chr10:38526760:C:T	rs148719335	C	T	.	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	38526785	38526786	chr10:38526786:A:G	rs35868590	A	G	.	Sox1.mouse_HMG_3	0	1	-	5.631440427892477	-1.2207387142008093	TCCATTCCATTGC
chr10	38526807	38526808	chr10:38526808:T:C	rs199956299	T	C	.	Sox1.mouse_HMG_3	3	1	-	7.973366515088131	1.1723393531711266	TCAATTCCATTCC
chr10	38526832	38526833	chr10:38526833:T:C	rs374678056	T	C	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr10	38527340	38527341	chr10:38527341:A:C	rs146138957	A	C	.	Sox1.mouse_HMG_3	10	1	-	4.894243198263659	-2.0058528233509882	TCTATTACATTGG
chr10	38527360	38527361	chr10:38527361:A:T	rs148387728	A	T	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	38527363	38527364	chr10:38527364:C:G	rs140603651	C	G	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	38527668	38527669	chr10:38527669:G:C	rs61839097	G	C	.	Sox1.mouse_HMG_3	6	1	-	5.631440427892477	5.206477831113791	TCCATTCCATTGC
chr10	38527678	38527679	chr10:38527679:G:C	rs201016933	G	C	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	38527724	38527725	chr10:38527725:A:G	rs149329934	A	G	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	38527731	38527732	chr10:38527732:T:A	rs922968455	T	A	.	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	38528212	38528213	chr10:38528213:A:G	rs7083719	A	G	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	38528241	38528242	chr10:38528242:C:A	rs143866896	C	A	.	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	38528273	38528274	chr10:38528274:A:G	rs140462124	A	G	.	Sox1.mouse_HMG_3	11	1	-	5.655892809600335	7.973366515088131	TCAATTCCATTTC
chr10	38528302	38528303	chr10:38528303:G:C	rs1327131404	G	C	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	38528308	38528309	chr10:38528309:C:A	rs1433074406	C	A	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr10	38528338	38528339	chr10:38528339:C:G	rs11011630	C	G	.	Sox1.mouse_HMG_3	11	1	-	12.540195207207693	7.973366515088131	TCAATTCCATTGC
chr10	38528361	38528362	chr10:38528362:T:A	rs1294549316	T	A	.	Sox1.mouse_HMG_3	3	1	-	7.184615942582777	0.38358878066577295	TCAATTCCATTCG
chr10	38528381	38528382	chr10:38528382:T:C	rs968470002	T	C	.	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	38528885	38528886	chr10:38528886:T:A	rs111208520	T	A	.	Sox1.mouse_HMG_3	8	1	-	6.675526069597897	-0.23322870971732224	TCAATGCCATTCG
chr10	38528894	38528895	chr10:38528895:A:T	rs149836820	A	T	.	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	38822943	38822944	chr10:38822944:A:G	rs10870428	A	G	.	Sox1.mouse_HMG_3	10	1	-	4.842689855387123	0.20747705958250817	TCCATTCCATTGG
chr10	41844532	41844533	chr10:41844533:T:C	rs61846559	T	C	.	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	41844554	41844555	chr10:41844555:C:T	rs61846558	C	T	.	Sox1.mouse_HMG_3	7	1	+	4.354064421984511	0.721596930889318	TCAATTTCATTTG
chr10	41845975	41845976	chr10:41845976:C:T	rs766536860	C	T	.	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	41857571	41857572	chr10:41857572:A:G	rs9794045	A	G	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	41860098	41860099	chr10:41860099:T:C	rs9730773	T	C	.	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	41861426	41861427	chr10:41861427:G:T	chr10:41861427:G:T	G	T	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	41865936	41865937	chr10:41865937:T:A	rs1042223682	T	A	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	41875160	41875161	chr10:41875161:G:T	rs200594027	G	T	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	41875214	41875215	chr10:41875215:A:G	rs201936983	A	G	.	Sox1.mouse_HMG_3	12	1	-	5.717217289639178	5.631440427892477	TCCATTCCATTGT
chr10	41878667	41878668	chr10:41878668:G:A	rs62641334	G	A	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr10	41881362	41881363	chr10:41881363:G:C	rs199849692	G	C	.	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	41881398	41881399	chr10:41881399:A:T	rs757993546	A	T	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	41881952	41881953	chr10:41881953:T:G	rs62646698	T	G	.	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	41882082	41882083	chr10:41882083:G:C	rs201029160	G	C	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr10	41882116	41882117	chr10:41882117:C:A	rs62638128	C	A	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	41882591	41882592	chr10:41882592:G:C	rs2334826	G	C	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	41884135	41884136	chr10:41884136:G:C	rs111216994	G	C	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	41884238	41884239	chr10:41884239:C:T	rs36137353	C	T	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	41911371	41911372	chr10:41911372:G:A	rs1387255832	G	A	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	41911380	41911381	chr10:41911381:T:C	rs1378360101	T	C	.	Sox1.mouse_HMG_3	8	1	-	5.206477831113791	-1.7022769482014304	TCCATTGCATTGC
chr10	41911397	41911398	chr10:41911398:G:C	chr10:41911398:G:C	G	C	.	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	41914673	41914674	chr10:41914674:A:C	rs1324953000	A	C	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	41914749	41914750	chr10:41914750:T:A	rs1429095698	T	A	.	Sox1.mouse_HMG_3	8	1	-	5.631440427892477	-1.2773143514227454	TCCATTCCATTGC
chr10	42304577	42304578	chr10:42304578:G:T	rs62635475	G	T	.	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr10	42312495	42312496	chr10:42312496:C:T	rs200005369	C	T	.	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	42315675	42315676	chr10:42315676:C:G	rs76843013	C	G	.	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	42428606	42428607	chr10:42428607:T:C	rs2419674	T	C	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr10	42941240	42941241	chr10:42941241:C:T	rs11239839	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr10	43285533	43285534	chr10:43285534:C:T	rs11238502	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	43287537	43287538	chr10:43287538:G:A	rs141795032	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	43332204	43332205	chr10:43332205:T:C	rs7909500	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.885941130530872	-2.000968377269636	AAAATTGCATTGA
chr10	43793805	43793806	chr10:43793806:G:T	rs1028519083	G	T	.	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr10	43793853	43793854	chr10:43793854:A:G	rs10899910	A	G	.	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	43793857	43793858	chr10:43793858:G:A	rs57113623	G	A	.	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr10	43816375	43816376	chr10:43816376:T:C	rs7083186	T	C	C	Sox1.mouse_HMG_3	5	1	+	8.516131637968499	4.703727082951316	TCAATTCCATTAT
chr10	43826997	43826998	chr10:43826998:A:T	rs729247	A	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	43888896	43888897	chr10:43888897:A:T	rs79128199	A	T	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr10	44031860	44031861	chr10:44031861:A:C	rs72782973	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr10	44143643	44143644	chr10:44143644:T:C	rs766927	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr10	44180843	44180844	chr10:44180844:G:A	rs74138238	G	A	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	44241009	44241010	chr10:44241010:G:A	rs79363200	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	44355927	44355928	chr10:44355928:A:G	rs920174	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.481669400164904	0.5947598923643957	TCAAAGCCATTGT
chr10	44376654	44376655	chr10:44376655:A:G	rs148782438	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr10	44398381	44398382	chr10:44398382:G:A	rs1023263	G	A	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	44672942	44672943	chr10:44672943:A:G	rs75190162	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	45280700	45280701	chr10:45280701:C:T	rs1073450	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	45302194	45302195	chr10:45302195:T:C	rs78215884	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	45471149	45471150	chr10:45471150:T:C	rs76491632	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr10	45471179	45471180	chr10:45471180:G:A	rs901684	G	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	46257669	46257670	chr10:46257670:C:T	rs191073147	C	T	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	46285324	46285325	chr10:46285325:C:A	chr10:46285325:C:A	C	A	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	46295407	46295408	chr10:46295408:A:T	rs61845180	A	T	.	Sox1.mouse_HMG_3	12	1	+	4.326912534393712	1.9134714923225657	TCAACCCCATTGA
chr10	46530174	46530175	chr10:46530175:A:G	rs28444926	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr10	46596194	46596195	chr10:46596195:G:A	rs28470456	G	A	G	Sox1.mouse_HMG_3	10	1	-	6.644391249100723	11.279604044905335	ACAATGGCATCGA
chr10	46878340	46878341	chr10:46878341:G:T	rs577730774	G	T	G	Sox1.mouse_HMG_3	6	1	-	8.598083671731706	8.649637014608244	TCACTGCCAGTGA
chr10	47045267	47045268	chr10:47045268:A:C	rs528869080	A	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	47045278	47045279	chr10:47045279:G:A	rs145175052	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr10	47176476	47176477	chr10:47176477:G:A	rs115419241	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	47383290	47383291	chr10:47383291:G:T	rs1993493	G	T	G	Sox1.mouse_HMG_3	5	1	+	4.016365003021772	4.525454876006652	TCAGTGGCATTGG
chr10	47409358	47409359	chr10:47409359:C:T	chr10:47409359:C:T	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.419158931819727	0.7866914407245342	CCAATTCCAGTGA
chr10	48222564	48222565	chr10:48222565:A:G	rs12252237	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr10	48479240	48479241	chr10:48479241:C:T	rs3888909	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	48511025	48511026	chr10:48511026:T:C	rs10857586	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	48545830	48545831	chr10:48545831:G:A	rs565417029	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	48547769	48547770	chr10:48547770:C:T	rs1814469	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	48584051	48584052	chr10:48584052:T:G	rs11101391	T	G	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	48741910	48741911	chr10:48741911:G:T	rs57379974	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr10	48741911	48741912	chr10:48741912:A:T	rs59859369	A	T	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	48748489	48748490	chr10:48748490:T:C	rs67702314	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	48907345	48907346	chr10:48907346:C:T	rs12263240	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	48935540	48935541	chr10:48935541:A:G	rs150168946	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.812932489095877	-1.0958222902193433	TTAATAGCATTCA
chr10	48935545	48935546	chr10:48935546:T:C	rs10776658	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr10	48948417	48948418	chr10:48948418:C:T	rs2137921	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	49088935	49088936	chr10:49088936:C:T	rs12762834	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr10	49261888	49261889	chr10:49261889:C:T	rs77168647	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr10	49283318	49283319	chr10:49283319:C:G	rs17783271	C	G	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	49283361	49283362	chr10:49283362:C:G	rs140303879	C	G	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr10	49323820	49323821	chr10:49323821:G:C	rs200715939	G	C	G	Sox1.mouse_HMG_3	7	1	-	6.024496348643273	-0.8552400418213384	TCAAGAGCATTGT
chr10	49353405	49353406	chr10:49353406:T:A	rs4838507	T	A	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	49377130	49377131	chr10:49377131:T:C	rs12572851	T	C	C	Sox1.mouse_HMG_3	0	1	+	5.053194938358859	-1.798984203734426	TCAATATCTTTGG
chr10	49404262	49404263	chr10:49404263:G:C	rs979017	G	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr10	49595751	49595752	chr10:49595752:G:A	rs980680653	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr10	50035508	50035509	chr10:50035509:G:A	rs546810372	G	A	.	Sox1.mouse_HMG_3	6	1	-	4.537430837063743	4.024353021953273	TTAATACCAGTGC
chr10	50169625	50169626	chr10:50169626:T:A	rs375802141	T	A	T	Sox1.mouse_HMG_3	8	1	-	8.206664056294722	1.2979092769795026	TCAATTACATTTA
chr10	50604512	50604513	chr10:50604513:C:T	rs11006277	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	51025292	51025293	chr10:51025293:G:A	rs10822114	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	51043832	51043833	chr10:51043833:G:A	rs11814118	G	A	G	Sox1.mouse_HMG_3	12	1	+	7.991635568582133	11.279604044905335	ACAATGGCATTGG
chr10	51099424	51099425	chr10:51099425:G:A	rs7090485	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr10	51171026	51171027	chr10:51171027:G:A	rs9415760	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr10	51171035	51171036	chr10:51171036:T:C	rs9415761	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	51915403	51915404	chr10:51915404:T:C	rs11000112	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	51919299	51919300	chr10:51919300:C:T	rs1937683	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	51964863	51964864	chr10:51964864:A:G	rs7085893	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.712775352785773	-0.08825180913123232	ACAATGGCATTCA
chr10	52100727	52100728	chr10:52100728:T:C	rs4935029	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	52207041	52207042	chr10:52207042:C:A	rs7898960	C	A	C	Sox1.mouse_HMG_3	11	1	-	5.128352546863471	-1.7559498507438884	TGAATGCCATTGC
chr10	52773532	52773533	chr10:52773533:G:T	rs10824795	G	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr10	52911893	52911894	chr10:52911894:G:A	rs7093457	G	A	A	Sox1.mouse_HMG_3	9	1	-	8.927639844183783	15.81454935198429	TCAATAACACTGA
chr10	53660489	53660490	chr10:53660490:C:G	rs76727463	C	G	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	53689425	53689426	chr10:53689426:G:A	rs7916023	G	A	A	Sox1.mouse_HMG_3	6	1	+	5.054286604265046	5.53080254392027	TCACTGGCACTGA
chr10	53843982	53843983	chr10:53843983:T:C	rs745328967	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr10	53965576	53965577	chr10:53965577:G:A	rs2593135	G	A	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	54009576	54009577	chr10:54009577:G:A	rs2610875	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr10	54411477	54411478	chr10:54411478:C:T	rs2384455	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr10	54470331	54470332	chr10:54470332:G:T	rs79733930	G	T	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	54716346	54716347	chr10:54716347:A:C	rs67442181	A	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	54734402	54734403	chr10:54734403:A:G	rs4935555	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr10	55450607	55450608	chr10:55450608:A:G	rs7088614	A	G	A	Sox1.mouse_HMG_3	4	1	+	7.39190459629261	5.127021370482577	TCAAATTCATTGC
chr10	55667454	55667455	chr10:55667455:G:A	rs1574191	G	A	T	Sox1.mouse_HMG_3	1	1	-	5.230479535006069	0.27220730389244197	GCAATGACATTGC
chr10	55822837	55822838	chr10:55822838:G:A	rs10825629	G	A	a	Sox1.mouse_HMG_3	11	1	+	5.2041394745287075	1.0942990435428088	TCAATTTCTTTGT
chr10	56496240	56496241	chr10:56496241:A:T	rs80261825	A	T	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	56700845	56700846	chr10:56700846:G:T	rs75171796	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr10	56961887	56961888	chr10:56961888:A:T	rs2393185	A	T	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	57053609	57053610	chr10:57053610:G:A	rs73277673	G	A	G	Sox1.mouse_HMG_3	1	1	-	4.706046715829483	-0.25222551528414416	TCAATGGCATGGC
chr10	57138483	57138484	chr10:57138484:T:C	rs11498138	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	57454111	57454112	chr10:57454112:G:A	rs115590581	G	A	a	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	57543546	57543547	chr10:57543547:C:T	rs11005855	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	57743903	57743904	chr10:57743904:A:G	rs74888351	A	G	g	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	57925275	57925276	chr10:57925276:G:C	rs7085744	G	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	57925306	57925307	chr10:57925307:C:T	rs7086874	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr10	57950273	57950274	chr10:57950274:T:C	rs9415524	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.853367197201214	0.21815440139659992	AAAATGACATTGA
chr10	57955711	57955712	chr10:57955712:T:C	rs2658618	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr10	58209349	58209350	chr10:58209350:G:C	rs12261547	G	C	G	Sox1.mouse_HMG_3	7	1	-	5.521400976959836	-1.3583354135047763	ACAATTGCAGTGC
chr10	58573710	58573711	chr10:58573711:G:C	rs11006188	G	C	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr10	58613186	58613187	chr10:58613187:C:T	rs757848774	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	58657496	58657497	chr10:58657497:C:G	rs12569625	C	G	C	Sox1.mouse_HMG_3	9	1	-	5.0970458197012185	1.9782113490132436	TCAATCACAGTGT
chr10	58755707	58755708	chr10:58755708:A:T	rs4325270	A	T	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr10	58782106	58782107	chr10:58782107:A:G	chr10:58782107:A:G	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	58797545	58797546	chr10:58797546:G:A	rs114030575	G	A	G	Sox1.mouse_HMG_3	12	1	-	4.718650194111307	4.804427055858008	TCACAGTCATTGC
chr10	58932775	58932776	chr10:58932776:T:C	rs12220374	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.18208323355795	-1.670095908535334	TCAATTCAATTCA
chr10	58953525	58953526	chr10:58953526:G:C	rs73298729	G	C	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	58953534	58953535	chr10:58953535:T:C	rs75303835	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.216786174354869	-1.6919686049603502	TCAATGCCATAGT
chr10	58953539	58953540	chr10:58953540:T:C	rs10826257	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.216786174354869	-1.5842409875621357	TCAATGCCATAGT
chr10	59376456	59376457	chr10:59376457:T:G	rs384626	T	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	59586618	59586619	chr10:59586619:A:G	rs7907910	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr10	59589456	59589457	chr10:59589457:T:C	rs115225219	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.696078692551984	-0.19083081524852452	TAACTACCATTGA
chr10	59594118	59594119	chr10:59594119:A:G	rs4948233	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr10	59664355	59664356	chr10:59664356:G:A	rs77200219	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	59943765	59943766	chr10:59943766:C:A	rs373132870	C	A	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	60041643	60041644	chr10:60041644:G:T	rs2393582	G	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr10	60044523	60044524	chr10:60044524:T:C	rs7900212	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.347624638250078	-2.539284869550429	TCAACAACATTCA
chr10	60114961	60114962	chr10:60114962:G:A	rs191498805	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	60342557	60342558	chr10:60342558:A:G	rs1473404	A	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	60368052	60368053	chr10:60368053:C:T	rs79359809	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	60414947	60414948	chr10:60414948:A:T	rs114385461	A	T	A	Sox1.mouse_HMG_3	9	1	-	4.804427055858008	-2.082482451942499	TCACAGTCATTGT
chr10	60414966	60414967	chr10:60414967:C:T	rs944542454	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	60434599	60434600	chr10:60434600:C:T	rs947959011	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	60570748	60570749	chr10:60570749:A:G	rs74318560	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	60780029	60780030	chr10:60780030:C:G	rs2260179	C	G	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	60953989	60953990	chr10:60953990:T:C	rs12220887	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.088696734013	-0.8200580453022197	ACAATAACATGGA
chr10	60963326	60963327	chr10:60963327:C:T	rs2893874	C	T	T	Sox1.mouse_HMG_3	11	1	-	5.313516928842889	1.203676497856991	TCACTTTCATCGT
chr10	60996633	60996634	chr10:60996634:G:C	rs2393709	G	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	61163504	61163505	chr10:61163505:C:T	rs11818852	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	61163544	61163545	chr10:61163545:T:C	rs116123721	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	61218228	61218229	chr10:61218229:C:T	rs1579184	C	T	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr10	61252548	61252549	chr10:61252549:G:T	rs117559418	G	T	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	61301513	61301514	chr10:61301514:C:T	rs3107446	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	61488036	61488037	chr10:61488037:A:T	rs2249816	A	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	61587933	61587934	chr10:61587934:C:G	rs2245309	C	G	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	61593847	61593848	chr10:61593848:C:T	rs4948470	C	T	C	Sox1.mouse_HMG_3	11	1	-	10.455753658097468	6.34591322711157	TCAAATACATTGA
chr10	61666315	61666316	chr10:61666316:T:C	rs10994865	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	61793185	61793186	chr10:61793186:C:T	rs1002843976	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	61993722	61993723	chr10:61993723:A:G	rs9415635	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	61993736	61993737	chr10:61993737:G:A	rs80092100	G	A	G	Sox1.mouse_HMG_3	1	1	-	8.632742366450248	3.67447013533662	ACAATTATATTGA
chr10	61993752	61993753	chr10:61993753:A:T	rs370520548	A	T	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	62214469	62214470	chr10:62214470:T:G	rs10995090	T	G	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr10	62225090	62225091	chr10:62225091:C:T	rs12360043	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	62424763	62424764	chr10:62424764:C:A	rs3999111	C	A	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	62443986	62443987	chr10:62443987:A:C	rs80060819	A	C	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	62504056	62504057	chr10:62504057:T:C	rs16917305	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr10	62631614	62631615	chr10:62631615:G:A	rs10995245	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr10	62816431	62816432	chr10:62816432:A:G	rs1255176209	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	63537608	63537609	chr10:63537609:T:G	rs72837085	T	G	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	63800202	63800203	chr10:63800203:T:G	rs1266702	T	G	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	63907492	63907493	chr10:63907493:A:G	rs7086527	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr10	63921219	63921220	chr10:63921220:C:T	rs2243532	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	64733959	64733960	chr10:64733960:A:G	rs16920271	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.960221916789303	-1.9485328625259173	TTACTGACATTGC
chr10	64892785	64892786	chr10:64892786:G:A	rs2932881	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	65067627	65067628	chr10:65067628:A:G	rs61858802	A	G	A	Sox1.mouse_HMG_3	9	1	+	6.037682862457412	9.156517333145386	TCAATAGCAATGT
chr10	65126117	65126118	chr10:65126118:G:A	rs4636540	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr10	65159540	65159541	chr10:65159541:A:T	rs10996247	A	T	A	Sox1.mouse_HMG_3	8	1	+	15.81454935198429	8.90579457266907	TCAATAACATTGA
chr10	65639869	65639870	chr10:65639870:C:A	rs10822601	C	A	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr10	65762734	65762735	chr10:65762735:T:C	rs7084681	T	C	T	Sox1.mouse_HMG_3	4	1	+	13.315331448166441	6.415235426551794	TCAATAACATTGC
chr10	65861546	65861547	chr10:65861547:G:T	rs35503142	G	T	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	66501616	66501617	chr10:66501617:C:G	rs55856935	C	G	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	66623131	66623132	chr10:66623132:C:A	rs9664949	C	A	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	66637440	66637441	chr10:66637441:G:A	rs12218587	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr10	67100801	67100802	chr10:67100802:A:G	rs2291106	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.617580516599853	0.7306710087993455	TCAATTTCTTTGA
chr10	67116126	67116127	chr10:67116127:A:G	rs2394336	A	G	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr10	67840196	67840197	chr10:67840197:C:A	rs190632204	C	A	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	68156564	68156565	chr10:68156565:G:A	rs71475229	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	68586686	68586687	chr10:68586687:G:T	rs10823232	G	T	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	68722480	68722481	chr10:68722481:G:A	rs113255973	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	68871392	68871393	chr10:68871393:G:A	rs370543393	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	69044028	69044029	chr10:69044029:T:C	rs2429014	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	69110524	69110525	chr10:69110525:G:T	rs7915836	G	T	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	69329922	69329923	chr10:69329923:A:G	rs12355201	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.2454471529547515	-1.6633076263604685	TCATTAACAGTGA
chr10	69428302	69428303	chr10:69428303:A:G	rs4617477	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.242412139654796	-2.6663426396604244	TCTCTAACATTGC
chr10	69628733	69628734	chr10:69628734:A:C	rs2812576	A	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	69628754	69628755	chr10:69628755:C:T	rs2616095	C	T	C	Sox1.mouse_HMG_3	4	1	+	5.268339517231407	12.168435538846055	TCAACGACATTGT
chr10	69649862	69649863	chr10:69649863:C:T	rs114516768	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr10	69755535	69755536	chr10:69755536:C:T	rs11812198	C	T	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	69767712	69767713	chr10:69767713:A:G	rs2255406	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	69838551	69838552	chr10:69838552:C:G	rs7913732	C	G	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	69953008	69953009	chr10:69953009:T:C	rs74139248	T	C	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr10	70432430	70432431	chr10:70432431:A:G	rs144307002	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	70542467	70542468	chr10:70542468:C:T	rs12412872	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	70542486	70542487	chr10:70542487:A:G	rs12415578	A	G	A	Sox1.mouse_HMG_3	5	1	-	8.240035786024507	4.427631231007322	TCACATCCATTGA
chr10	70710419	70710420	chr10:70710420:C:T	rs12358019	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr10	70722086	70722087	chr10:70722087:T:C	rs56259942	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	70886208	70886209	chr10:70886209:G:A	rs57037268	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr10	70952686	70952687	chr10:70952687:A:G	rs145105761	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	70995770	70995771	chr10:70995771:A:C	rs10823658	A	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	71106087	71106088	chr10:71106088:A:G	rs10999680	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	71233322	71233323	chr10:71233323:C:T	rs12250459	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	71588200	71588201	chr10:71588201:A:G	rs138622309	A	G	A	Sox1.mouse_HMG_3	8	1	+	8.353579959823033	1.4448251805078127	ACAAAAACATTGA
chr10	71605150	71605151	chr10:71605151:G:A	rs2166637	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	71631883	71631884	chr10:71631884:G:A	rs61851977	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr10	71755904	71755905	chr10:71755905:T:C	rs6480552	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	71755920	71755921	chr10:71755921:T:C	rs10999984	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	71769121	71769122	chr10:71769122:A:C	rs10999991	A	C	A	Sox1.mouse_HMG_3	2	1	+	8.911796564624945	2.003041785309726	TAAATAACATTGA
chr10	71769140	71769141	chr10:71769141:T:C	rs10999992	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	71771311	71771312	chr10:71771312:A:G	rs10762477	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr10	71815787	71815788	chr10:71815788:G:A	rs1054635	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	71849804	71849805	chr10:71849805:A:G	rs7093252	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	71868027	71868028	chr10:71868028:C:G	rs36009580	C	G	C	Sox1.mouse_HMG_3	7	1	+	5.207838196702426	-1.6718981937621855	TCACTATCAGTAA
chr10	72173940	72173941	chr10:72173941:A:G	rs11000202	A	G	A	Sox1.mouse_HMG_3	0	1	-	8.365187101798652	1.5130079597053667	TCAATACCATTAG
chr10	72328368	72328369	chr10:72328369:G:A	rs113672582	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	72502796	72502797	chr10:72502797:A:G	rs12783031	A	G	G	Sox1.mouse_HMG_3	3	1	+	4.633725121504984	-2.1673020404120202	TCAATGTCATTTC
chr10	73894417	73894418	chr10:73894418:C:T	rs74614028	C	T	c	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	74035491	74035492	chr10:74035492:C:T	rs1471757083	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	74088758	74088759	chr10:74088759:G:A	rs6480715	G	A	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	74765967	74765968	chr10:74765968:C:T	rs870389	C	T	C	Sox1.mouse_HMG_3	8	1	-	4.385153325278779	11.293908104593998	TCAATGACGTTGG
chr10	74929189	74929190	chr10:74929190:A:G	rs117901502	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	75137998	75137999	chr10:75137999:C:A	rs10509354	C	A	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	75192363	75192364	chr10:75192364:G:A	rs77814027	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.314205448512006	5.399982310258707	TCATTTGCATTGC
chr10	75230486	75230487	chr10:75230487:C:T	rs11001335	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr10	75230492	75230493	chr10:75230493:T:C	rs556535157	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	75409009	75409010	chr10:75409010:T:A	rs181699388	T	A	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	75428663	75428664	chr10:75428664:A:T	rs77205868	A	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	75862827	75862828	chr10:75862828:G:A	rs1323075	G	A	G	Sox1.mouse_HMG_3	9	1	+	5.819205068393384	2.7003705977054095	TCACTTCCAGTGG
chr10	75865662	75865663	chr10:75865663:G:A	rs4745799	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	76583903	76583904	chr10:76583904:T:C	rs139547703	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr10	76836373	76836374	chr10:76836374:A:G	rs116957978	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr10	77007213	77007214	chr10:77007214:G:A	rs12246819	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr10	77392785	77392786	chr10:77392786:A:C	rs12221259	A	C	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	77537237	77537238	chr10:77537238:C:G	rs11002199	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	77631544	77631545	chr10:77631545:G:A	rs113936647	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr10	77639993	77639994	chr10:77639994:G:A	rs2812419	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	77664045	77664046	chr10:77664046:C:T	rs2670158	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr10	78087296	78087297	chr10:78087297:A:G	rs118052062	A	G	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	78176431	78176432	chr10:78176432:G:A	rs72642297	G	A	G	Sox1.mouse_HMG_3	11	1	+	7.069353845879409	2.95951341489351	ACAATGCCATCGA
chr10	78180239	78180240	chr10:78180240:A:G	rs6480883	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr10	78378081	78378082	chr10:78378082:G:A	rs16935892	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.128352546863471	1.0185121158775727	TGAATGCCATTGC
chr10	78510311	78510312	chr10:78510312:G:A	rs11002586	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr10	78543140	78543141	chr10:78543141:C:T	rs55896222	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr10	78550878	78550879	chr10:78550879:G:A	rs7090749	G	A	A	Sox1.mouse_HMG_3	3	1	-	6.813076852025812	2.176214219305231	ACACTTACATTGG
chr10	78685869	78685870	chr10:78685870:T:C	rs539749565	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.340099048207852	-2.5686557311073677	TCAATCCCACTGA
chr10	78915340	78915341	chr10:78915341:G:C	rs114730985	G	C	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	78933967	78933968	chr10:78933968:T:C	rs1439037	T	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr10	78960458	78960459	chr10:78960459:A:G	rs112634910	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr10	79037287	79037288	chr10:79037288:C:T	rs113105314	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr10	79317900	79317901	chr10:79317901:G:A	rs372536263	G	A	G	Sox1.mouse_HMG_3	7	1	-	9.538531949142415	5.906064458047224	TCAATGGCATTCA
chr10	79385778	79385779	chr10:79385779:T:C	rs1063119	T	C	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	79396997	79396998	chr10:79396998:G:A	rs6480936	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr10	80411099	80411100	chr10:80411100:A:G	rs7082705	A	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	80562398	80562399	chr10:80562399:A:G	rs148520393	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	80613522	80613523	chr10:80613523:G:A	rs11186280	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr10	80663930	80663931	chr10:80663931:C:T	rs1913754	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	80689604	80689605	chr10:80689605:C:T	rs4934418	C	T	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr10	80737521	80737522	chr10:80737522:A:G	rs7916858	A	G	A	Sox1.mouse_HMG_3	12	1	-	5.375507759764879	5.289730898018176	ACAAAATCATTGT
chr10	80939068	80939069	chr10:80939069:A:G	rs10882369	A	G	A	Sox1.mouse_HMG_3	10	1	-	3.850641474431168	-0.784571321373446	CCAAAAGCATTGA
chr10	80948671	80948672	chr10:80948672:C:A	rs7909819	C	A	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	82035206	82035207	chr10:82035207:T:C	rs10884066	T	C	C	Sox1.mouse_HMG_3	10	1	+	5.869397287456348	1.234184491651734	TCAAATGCATTAA
chr10	82085082	82085083	chr10:82085083:G:A	rs41412145	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	82206563	82206564	chr10:82206564:A:G	rs7908131	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.82747103938571	-1.0594384684147984	ACACTGGCATTGG
chr10	82463344	82463345	chr10:82463345:A:G	rs78631392	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr10	82922980	82922981	chr10:82922981:T:G	rs10509461	T	G	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	82923004	82923005	chr10:82923005:T:C	rs1923564	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr10	83193266	83193267	chr10:83193267:T:C	rs549581639	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr10	83868082	83868083	chr10:83868083:A:T	rs12240734	A	T	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	84224966	84224967	chr10:84224967:G:A	rs11200928	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	84252194	84252195	chr10:84252195:C:A	rs17103283	C	A	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	84252213	84252214	chr10:84252214:C:G	rs12267185	C	G	C	Sox1.mouse_HMG_3	9	1	-	4.446637799967506	1.3278033292795324	TCAATCTCAGTGC
chr10	84294359	84294360	chr10:84294360:T:C	rs11200968	T	C	T	Sox1.mouse_HMG_3	5	1	-	6.1894154306266085	4.95674265955952	ACACAAACATTGA
chr10	85232246	85232247	chr10:85232247:A:C	rs11201515	A	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr10	85833027	85833028	chr10:85833028:T:C	rs947594	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.9443261144185495	-1.9425833933819585	TCTCTGTCATTGA
chr10	86039738	86039739	chr10:86039739:C:G	rs17106202	C	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	86155427	86155428	chr10:86155428:G:T	rs187878696	G	T	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr10	86254567	86254568	chr10:86254568:T:A	rs79925869	T	A	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr10	86302748	86302749	chr10:86302749:A:G	rs12242059	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr10	86308854	86308855	chr10:86308855:A:T	rs116260881	A	T	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr10	86332574	86332575	chr10:86332575:C:G	rs189310091	C	G	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	86441105	86441106	chr10:86441106:G:C	rs17422287	G	C	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	86798713	86798714	chr10:86798714:C:T	rs4933411	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	87090523	87090524	chr10:87090524:C:G	rs4244974	C	G	N	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	87544699	87544700	chr10:87544700:C:T	rs77091479	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr10	87703006	87703007	chr10:87703007:T:C	rs7084129	T	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	87926751	87926752	chr10:87926752:G:T	rs17107001	G	T	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	87978534	87978535	chr10:87978535:G:A	rs148207180	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr10	88126003	88126004	chr10:88126004:A:G	rs4933472	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr10	88131043	88131044	chr10:88131044:G:C	rs10887784	G	C	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	88477640	88477641	chr10:88477641:G:A	rs1325907	G	A	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	88489326	88489327	chr10:88489327:G:T	rs17343533	G	T	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr10	88794355	88794356	chr10:88794356:T:C	rs303502	T	C	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr10	88951543	88951544	chr10:88951544:A:G	rs12264840	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	89121775	89121776	chr10:89121776:G:A	rs80192414	G	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	89342731	89342732	chr10:89342732:T:C	rs1332333	T	C	C	Sox1.mouse_HMG_3	9	1	+	4.5475686775689095	-2.3393408302315986	TCACTCACATTCA
chr10	89540653	89540654	chr10:89540654:T:C	rs77813612	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr10	89700013	89700014	chr10:89700014:A:C	rs73382916	A	C	A	Sox1.mouse_HMG_3	10	1	-	5.228591856236568	-1.6715041653780802	TCAATTTCATTTT
chr10	89849311	89849312	chr10:89849312:T:C	rs10881691	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	90031698	90031699	chr10:90031699:C:A	rs2419351	C	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	90170955	90170956	chr10:90170956:G:A	rs4142854	G	A	G	Sox1.mouse_HMG_3	6	1	+	11.788693917890216	12.26520985754544	ACAATTGCATTGA
chr10	90175096	90175097	chr10:90175097:A:G	rs7100222	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr10	90314388	90314389	chr10:90314389:C:T	rs10509599	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	90343633	90343634	chr10:90343634:A:G	rs75584463	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	90897239	90897240	chr10:90897240:T:C	rs79703029	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr10	90919872	90919873	chr10:90919873:G:C	rs10047267	G	C	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	91088895	91088896	chr10:91088896:A:T	chr10:91088896:A:T	A	T	A	Sox1.mouse_HMG_3	10	1	-	5.380907459938081	-1.519188561676566	ACAATTACATTTA
chr10	91412629	91412630	chr10:91412630:T:A	rs190273384	T	A	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr10	91412630	91412631	chr10:91412631:A:T	rs55762845	A	T	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	91545468	91545469	chr10:91545469:C:T	rs10881919	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	91614083	91614084	chr10:91614084:A:C	rs7071622	A	C	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	91621611	91621612	chr10:91621612:G:A	rs529680285	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	91759034	91759035	chr10:91759035:T:C	rs17107010	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	91797097	91797098	chr10:91797098:T:C	rs1341263	T	C	T	Sox1.mouse_HMG_3	0	1	-	9.356325264532455	5.329902718795813	ACAATAATATTGA
chr10	91797361	91797362	chr10:91797362:G:C	rs536335806	G	C	G	Sox1.mouse_HMG_3	1	1	-	4.804612899383746	-2.0981398879756004	TCAATAACATGAA
chr10	91814160	91814161	chr10:91814161:G:C	rs10881973	G	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	91814205	91814206	chr10:91814206:A:C	rs7067554	A	C	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	92291417	92291418	chr10:92291418:C:T	rs139889315	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	92895463	92895464	chr10:92895464:T:C	rs61862263	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	93116519	93116520	chr10:93116520:G:C	rs376789697	G	C	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr10	93250365	93250366	chr10:93250366:A:G	rs1467684	A	G	G	Sox1.mouse_HMG_3	9	1	-	3.8205221672917706	-3.0663873405087374	TCAATGTCTTTGG
chr10	93255795	93255796	chr10:93255796:G:C	rs1418754	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	93268341	93268342	chr10:93268342:C:T	rs7900460	C	T	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr10	93291274	93291275	chr10:93291275:C:T	rs2761309	C	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	93387413	93387414	chr10:93387414:T:C	rs701854	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.2317280092217775	-1.6551814985787312	TCACAGCCATTGC
chr10	93393046	93393047	chr10:93393047:T:A	rs73319677	T	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	93445077	93445078	chr10:93445078:A:G	rs61867761	A	G	A	Sox1.mouse_HMG_3	4	1	-	9.068402114813603	2.168306093198954	TCAATATCAGTGT
chr10	93475633	93475634	chr10:93475634:A:G	rs77089562	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	93475650	93475651	chr10:93475651:T:G	rs7922093	T	G	T	Sox1.mouse_HMG_3	0	1	+	4.581747135270101	-2.270432006823183	TCAACATCAGTGA
chr10	93548911	93548912	chr10:93548912:G:A	rs77653245	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr10	94007357	94007358	chr10:94007358:T:G	rs891982361	T	G	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	94017539	94017540	chr10:94017540:T:C	rs1192192597	T	C	t	Sox1.mouse_HMG_3	3	1	-	5.836823354126688	-0.9642038077903163	TCAATGACATCAA
chr10	94632305	94632306	chr10:94632306:T:C	rs111501284	T	C	-	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	95412837	95412838	chr10:95412838:T:C	rs1410059	T	C	C	Sox1.mouse_HMG_3	12	1	-	4.4259813940913535	1.1380129177681515	TCAGTCCCATTGA
chr10	95878166	95878167	chr10:95878167:T:C	rs75584894	T	C	T	Sox1.mouse_HMG_3	8	1	-	9.062844026811934	2.1540892474967137	TCACTCCCATTGA
chr10	96244940	96244941	chr10:96244941:A:G	rs3789929	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.804612899383746	-2.0822966084167627	TCAATAACATGAA
chr10	96588837	96588838	chr10:96588838:G:A	rs7071044	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr10	97898164	97898165	chr10:97898165:T:C	rs611527	T	C	C	Sox1.mouse_HMG_3	12	1	+	5.73906256115389	5.6532856994071885	TCAATTCCACTGT
chr10	98207357	98207358	chr10:98207358:A:G	rs10509720	A	G	A	Sox1.mouse_HMG_3	1	1	+	8.1366603236662	8.1366603236662	TAAATTCCATTGA
chr10	98209810	98209811	chr10:98209811:A:G	rs11189513	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	98264961	98264962	chr10:98264962:C:T	rs149871694	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr10	98404261	98404262	chr10:98404262:A:G	rs111762933	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	98419516	98419517	chr10:98419517:C:T	rs11189600	C	T	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr10	98453578	98453579	chr10:98453579:C:T	rs144232085	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.954812614410724	1.8449721834248267	TCACTTCTATTGG
chr10	98515084	98515085	chr10:98515085:C:A	rs11189644	C	A	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	98619421	98619422	chr10:98619422:A:T	rs10748747	A	T	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	98779862	98779863	chr10:98779863:A:C	rs714391	A	C	t	Sox1.mouse_HMG_3	9	1	-	4.6290078743922916	0.860932837279758	TTACTTCCATTGG
chr10	98971564	98971565	chr10:98971565:T:C	rs10883233	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr10	99569212	99569213	chr10:99569213:A:T	rs7078410	A	T	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr10	99832864	99832865	chr10:99832865:A:G	rs4148398	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	99906853	99906854	chr10:99906854:A:G	rs748788225	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	99994559	99994560	chr10:99994560:G:C	rs903761919	G	C	G	Sox1.mouse_HMG_3	7	1	-	5.292254692860492	-1.5874816976041186	TCAATTGCGTTGT
chr10	99994567	99994568	chr10:99994568:C:T	rs113444912	C	T	c	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	100537788	100537789	chr10:100537789:A:G	rs7084810	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	100601097	100601098	chr10:100601098:A:G	rs2489003	A	G	A	Sox1.mouse_HMG_3	8	1	+	8.305505874176276	1.3967510948610564	TTAATACCATTGC
chr10	100782767	100782768	chr10:100782768:G:A	rs11190702	G	A	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	100955129	100955130	chr10:100955130:C:T	rs4919509	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr10	101287300	101287301	chr10:101287301:C:T	rs587854	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	101457388	101457389	chr10:101457389:A:G	rs9419907	A	G	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	101564380	101564381	chr10:101564381:A:G	rs113081648	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	102596702	102596703	chr10:102596703:T:C	chr10:102596703:T:C	T	C	T	Sox1.mouse_HMG_3	2	1	+	4.661203595901313	4.661203595901313	TCTATAGCAGTGA
chr10	102845158	102845159	chr10:102845159:T:G	rs11191416	T	G	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	102854084	102854085	chr10:102854085:C:T	rs909247784	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	102921385	102921386	chr10:102921386:A:G	rs17115213	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr10	103175754	103175755	chr10:103175755:A:G	rs79478479	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr10	103368758	103368759	chr10:103368759:G:A	rs924710320	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr10	103678603	103678604	chr10:103678604:A:G	rs75948892	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.094824950380572	0.45961215457595705	TCAAGACCAGTGA
chr10	103767393	103767394	chr10:103767394:G:T	rs79636562	G	T	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr10	103767402	103767403	chr10:103767403:A:C	rs55909417	A	C	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	103804165	103804166	chr10:103804166:A:G	rs57229380	A	G	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr10	103930508	103930509	chr10:103930509:G:A	rs7908525	G	A	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	104514070	104514071	chr10:104514071:T:C	rs10786802	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	104824567	104824568	chr10:104824568:G:A	rs11192196	G	A	A	Sox1.mouse_HMG_3	7	1	-	5.143721527512412	1.5112540364172193	TAAATAACAGTGA
chr10	105288105	105288106	chr10:105288106:G:A	rs139043347	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.806765412443092	0.696924981457193	TCACTGGCATCGC
chr10	105982906	105982907	chr10:105982907:T:C	rs1361961831	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	106338454	106338455	chr10:106338455:A:G	rs6584740	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	106837696	106837697	chr10:106837697:A:C	rs17121682	A	C	A	Sox1.mouse_HMG_3	9	1	-	6.1335244626323995	2.365449425519865	ACAATTATATTGC
chr10	107075445	107075446	chr10:107075446:A:T	rs927983	A	T	T	Sox1.mouse_HMG_3	8	1	+	6.248445694038804	-0.6603090852764162	ACACTTTCATTGG
chr10	107215399	107215400	chr10:107215400:C:T	rs9888087	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	107727349	107727350	chr10:107727350:T:C	rs72827083	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr10	107731848	107731849	chr10:107731849:G:A	rs111412055	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr10	107917321	107917322	chr10:107917322:A:G	rs12572511	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	108427304	108427305	chr10:108427305:C:A	rs192030738	C	A	C	Sox1.mouse_HMG_3	1	1	+	4.548610823589348	-2.354141963769996	ACACTGGCATTCA
chr10	108512149	108512150	chr10:108512150:T:C	rs11194139	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	109071641	109071642	chr10:109071642:C:T	rs17125665	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr10	109072889	109072890	chr10:109072890:G:A	rs75241430	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	109215414	109215415	chr10:109215415:T:C	rs7358046	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	109259592	109259593	chr10:109259593:G:A	rs11194519	G	A	G	Sox1.mouse_HMG_3	9	1	+	8.25904235498469	5.140207884296718	TCAATTTCAGTGC
chr10	109308894	109308895	chr10:109308895:G:A	rs10884741	G	A	A	Sox1.mouse_HMG_3	3	1	-	5.0459987785360045	0.40913614581542324	TTACTGACATTGT
chr10	109931183	109931184	chr10:109931184:C:T	rs12570423	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	109946804	109946805	chr10:109946805:A:T	rs188981163	A	T	A	Sox1.mouse_HMG_3	8	1	+	6.670115088597155	-0.23863969071806457	TCACTAACATTCT
chr10	110135082	110135083	chr10:110135083:C:A	rs115945554	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr10	110203462	110203463	chr10:110203463:A:G	rs72830441	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.004556938702574	-1.84762220339071	TCACTCACATTAA
chr10	110269776	110269777	chr10:110269777:A:G	rs941893217	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	110383445	110383446	chr10:110383446:T:C	rs17127325	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	110414969	110414970	chr10:110414970:A:G	rs1024829398	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	110414971	110414972	chr10:110414972:A:C	rs1017587303	A	C	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	110416130	110416131	chr10:110416131:T:C	rs7083193	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.018014839937738	-2.8907399393774824	TCACAGGCATTGG
chr10	110513945	110513946	chr10:110513946:A:G	rs10884985	A	G	A	Sox1.mouse_HMG_3	5	1	+	3.7877414715142863	2.555068700447198	TCACTAGCACTGC
chr10	110725322	110725323	chr10:110725323:C:T	rs73356958	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	110775318	110775319	chr10:110775319:T:C	rs2078243	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	110833757	110833758	chr10:110833758:A:G	rs7092695	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.42638601630901	-2.4823687630062112	TCAAGTGCATTGG
chr10	110850046	110850047	chr10:110850047:A:G	rs4918605	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	111333549	111333550	chr10:111333550:A:T	rs73358858	A	T	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	111720880	111720881	chr10:111720881:G:A	rs78281897	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	111936431	111936432	chr10:111936432:A:T	rs2111640	A	T	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr10	112082722	112082723	chr10:112082723:C:T	rs138148681	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	112169144	112169145	chr10:112169145:A:C	rs2803616	A	C	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	112304212	112304213	chr10:112304213:A:G	rs61431162	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.6095240286130785	-1.2773854791874286	AAAATAGCATTGA
chr10	112314762	112314763	chr10:112314763:C:G	rs9804385	C	G	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr10	112519657	112519658	chr10:112519658:G:A	rs67451905	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr10	112622965	112622966	chr10:112622966:T:C	rs140575978	T	C	t	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	112632001	112632002	chr10:112632002:A:G	rs76763495	A	G	A	Sox1.mouse_HMG_3	12	1	-	6.219301324379101	6.1335244626323995	ACAATTATATTGT
chr10	112750919	112750920	chr10:112750920:A:G	rs185984841	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr10	112789374	112789375	chr10:112789375:G:C	rs574984721	G	C	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	113093547	113093548	chr10:113093548:T:C	rs112301086	T	C	T	Sox1.mouse_HMG_3	6	1	+	7.477681458039314	7.990759273149784	TCAAATTCATTGT
chr10	113317774	113317775	chr10:113317775:C:T	rs1904443	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	113382500	113382501	chr10:113382501:G:C	rs7089082	G	C	G	Sox1.mouse_HMG_3	3	1	-	5.541531205735215	0.9046685730146333	TCCCTTGCATTGA
chr10	113382522	113382523	chr10:113382523:C:T	rs139385895	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	113445656	113445657	chr10:113445657:A:C	rs10885456	A	C	A	Sox1.mouse_HMG_3	0	1	-	3.912903578980884	-2.939275563112401	TCATTCTCATTGA
chr10	113496965	113496966	chr10:113496966:A:G	rs75661941	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	113817287	113817288	chr10:113817288:T:A	rs539706257	T	A	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	114027293	114027294	chr10:114027294:T:C	rs17091246	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.103816083683004	1.2169065758824962	ACAATTCCATTAA
chr10	114242036	114242037	chr10:114242037:A:C	rs630051	A	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	114390401	114390402	chr10:114390402:C:T	rs4751756	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr10	114430514	114430515	chr10:114430515:G:A	rs11196740	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	114442569	114442570	chr10:114442570:A:G	rs1885334	A	G	A	Sox1.mouse_HMG_3	10	1	-	11.941196112065553	7.30598331626094	TCACTGGCATTGA
chr10	114551864	114551865	chr10:114551865:G:A	rs4144582	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr10	114603075	114603076	chr10:114603076:A:G	rs7094673	A	G	a	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr10	114749369	114749370	chr10:114749370:T:C	rs808312	T	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	115052953	115052954	chr10:115052954:A:G	rs7098244	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.902901955964232	-1.9840075518362752	TCAATTACATGGG
chr10	116005466	116005467	chr10:116005467:C:T	rs117139889	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.640099185593048	2.007631694497855	TCAACTCCATTGC
chr10	116101179	116101180	chr10:116101180:G:C	rs2694779	G	C	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	116278864	116278865	chr10:116278865:G:A	rs143925316	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.113283483328514	1.4808159922333224	ACAATCCCATTGG
chr10	116611749	116611750	chr10:116611750:G:C	rs4523611	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	116700063	116700064	chr10:116700064:C:A	rs10787716	C	A	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	116797995	116797996	chr10:116797996:C:T	rs1621857	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	117530063	117530064	chr10:117530064:C:G	rs11593815	C	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr10	117665631	117665632	chr10:117665632:T:C	rs17096571	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	117775444	117775445	chr10:117775445:A:G	rs4752105	A	G	A	Sox1.mouse_HMG_3	12	1	+	11.653155578121854	8.365187101798652	TCAATACCATTAA
chr10	117779782	117779783	chr10:117779783:C:T	rs912748	C	T	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	118374409	118374410	chr10:118374410:G:T	rs10886226	G	T	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	118384825	118384826	chr10:118384826:C:T	rs7083887	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.195749169298846	1.0859087383129475	TCAATGACACTGC
chr10	118393056	118393057	chr10:118393057:C:A	rs73410327	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	118495310	118495311	chr10:118495311:T:C	rs10787840	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	118577766	118577767	chr10:118577767:T:C	rs1766241	T	C	t	Sox1.mouse_HMG_3	9	1	-	4.355445253916955	7.474279724604926	TCAATGCCAATGG
chr10	118595280	118595281	chr10:118595281:C:G	rs8192520	C	G	C	Sox1.mouse_HMG_3	6	1	+	3.4672758986960504	3.0423133019173654	TCACTTCCCTTGC
chr10	118595305	118595306	chr10:118595306:C:T	rs3740551	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr10	118871096	118871097	chr10:118871097:T:C	rs116203520	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr10	118904398	118904399	chr10:118904399:A:G	rs611959	A	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	119120787	119120788	chr10:119120788:C:T	rs12243427	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr10	119120815	119120816	chr10:119120816:G:A	rs113259304	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	119178074	119178075	chr10:119178075:C:T	chr10:119178075:C:T	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr10	119218366	119218367	chr10:119218367:A:C	chr10:119218367:A:C	A	C	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr10	119218402	119218403	chr10:119218403:A:C	chr10:119218403:A:C	A	C	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	119267806	119267807	chr10:119267807:C:T	rs79383846	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	119342246	119342247	chr10:119342247:T:C	rs291974	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr10	119342255	119342256	chr10:119342256:T:G	rs910169376	T	G	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	119346171	119346172	chr10:119346172:A:T	rs4751712	A	T	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	119480966	119480967	chr10:119480967:C:T	rs11198958	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	119480980	119480981	chr10:119480981:T:C	rs36097989	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	119480982	119480983	chr10:119480983:C:G	rs2039486	C	G	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr10	119870766	119870767	chr10:119870767:C:T	rs78527421	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr10	119899329	119899330	chr10:119899330:C:A	rs12257358	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr10	120390608	120390609	chr10:120390609:C:T	rs7073577	C	T	C	Sox1.mouse_HMG_3	1	1	+	7.643413730240157	2.68514149912653	TCAATGCCAATGA
chr10	120423612	120423613	chr10:120423613:C:T	rs78251521	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr10	120634701	120634702	chr10:120634702:A:C	rs10886730	A	C	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr10	120638121	120638122	chr10:120638122:T:C	rs10886732	T	C	T	Sox1.mouse_HMG_3	5	1	-	3.860331819446848	2.6276590483797606	TCACCAGCATTGT
chr10	120800180	120800181	chr10:120800181:T:G	rs148141959	T	G	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr10	120976217	120976218	chr10:120976218:T:A	rs2247333	T	A	A	Sox1.mouse_HMG_3	3	1	-	3.9086373856235563	-2.8923897762934505	TCAATGGCTTTGG
chr10	121097246	121097247	chr10:121097247:T:C	rs78645674	T	C	.	Sox1.mouse_HMG_3	6	1	+	8.201264356121522	8.714342171231992	TCAATATCATCGT
chr10	121334549	121334550	chr10:121334550:C:T	rs75733246	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	121514547	121514548	chr10:121514548:C:A	rs3135763	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr10	121524189	121524190	chr10:121524190:C:A	rs2912767	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	121615423	121615424	chr10:121615424:G:T	rs10633692	G	T	G	Sox1.mouse_HMG_3	6	1	-	4.533951579833962	4.5855049227105	ACAAAACCAGTGA
chr10	121615428	121615429	chr10:121615429:G:T	rs28555429	G	T	G	Sox1.mouse_HMG_3	1	1	-	4.533951579833962	-2.3688012075253826	ACAAAACCAGTGA
chr10	121842050	121842051	chr10:121842051:C:T	rs10886995	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr10	122022953	122022954	chr10:122022954:A:G	rs2461219	A	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr10	122112283	122112284	chr10:122112284:G:A	rs4751872	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr10	122112315	122112316	chr10:122112316:A:T	rs4752647	A	T	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	122120696	122120697	chr10:122120697:C:T	rs11200411	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	122249411	122249412	chr10:122249412:T:C	rs2273794	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr10	122275673	122275674	chr10:122275674:T:G	rs11817245	T	G	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr10	122474767	122474768	chr10:122474768:A:T	rs2672591	A	T	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr10	122474803	122474804	chr10:122474804:G:A	rs4752699	G	A	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr10	122475670	122475671	chr10:122475671:G:A	rs79057333	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	122475709	122475710	chr10:122475710:T:G	rs72834453	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr10	122494329	122494330	chr10:122494330:A:T	rs2268352	A	T	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	122544698	122544699	chr10:122544699:A:G	rs3019494	A	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr10	122627964	122627965	chr10:122627965:T:A	rs3019468	T	A	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	123470669	123470670	chr10:123470670:T:C	rs705150	T	C	T	Sox1.mouse_HMG_3	6	1	-	6.2894484287511006	5.812932489095877	TTAATAACATTCA
chr10	123622019	123622020	chr10:123622020:C:T	rs78246633	C	T	C	Sox1.mouse_HMG_3	3	1	+	6.294132492668032	1.6572698599474498	TCACTAGGATTGA
chr10	123773097	123773098	chr10:123773098:G:A	rs117472226	G	A	-	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	123916504	123916505	chr10:123916505:A:G	rs17618205	A	G	G	Sox1.mouse_HMG_3	8	1	+	12.366158708844239	5.457403929529018	TCACTGCCATTGA
chr10	123970199	123970200	chr10:123970200:C:A	rs9422291	C	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr10	124047815	124047816	chr10:124047816:G:A	rs118132998	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.53080254392027	1.8983350528250769	TCACTGACAATGA
chr10	124164510	124164511	chr10:124164511:C:T	rs36140936	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr10	124201080	124201081	chr10:124201081:C:T	rs879119690	C	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	124223544	124223545	chr10:124223545:C:T	rs945726647	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	124224407	124224408	chr10:124224408:G:A	rs999118007	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr10	124306992	124306993	chr10:124306993:C:T	rs114870889	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr10	124342823	124342824	chr10:124342824:A:T	rs569163330	A	T	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	124365655	124365656	chr10:124365656:A:C	rs2674328	A	C	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	124374989	124374990	chr10:124374990:G:C	rs7080814	G	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr10	124521961	124521962	chr10:124521962:G:A	chr10:124521962:G:A	G	A	G	Sox1.mouse_HMG_3	6	1	-	4.031254979612143	3.518177164501672	TCACTGCCAGTCA
chr10	124605597	124605598	chr10:124605598:G:A	rs3740540	G	A	G	Sox1.mouse_HMG_3	6	1	-	2.958186025711171	2.4451082106007003	TCCCTGCCATTGC
chr10	124876657	124876658	chr10:124876658:G:A	rs183821302	G	A	g	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	124879922	124879923	chr10:124879923:G:C	rs10794185	G	C	-	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr10	124924581	124924582	chr10:124924582:C:G	rs747934234	C	G	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	125098131	125098132	chr10:125098132:G:A	rs12777451	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr10	125117193	125117194	chr10:125117194:G:A	rs74163343	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr10	125145611	125145612	chr10:125145612:C:T	rs139121751	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr10	125156051	125156052	chr10:125156052:C:T	rs10901870	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr10	125235829	125235830	chr10:125235830:A:G	rs61869235	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr10	125270913	125270914	chr10:125270914:C:T	rs7894598	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	125476050	125476051	chr10:125476051:T:C	rs79246833	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	125549511	125549512	chr10:125549512:A:G	rs3847472	A	G	G	Sox1.mouse_HMG_3	2	1	+	3.489121170210763	-3.4196336091044564	TCACTTCCAATGC
chr10	126019521	126019522	chr10:126019522:A:G	rs2176099	A	G	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr10	126019522	126019523	chr10:126019523:G:T	rs2176098	G	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	126240404	126240405	chr10:126240405:A:G	rs4962524	A	G	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	126249727	126249728	chr10:126249728:A:G	rs4962324	A	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr10	126315018	126315019	chr10:126315019:G:A	rs17758801	G	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	126352269	126352270	chr10:126352270:T:C	rs11597735	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr10	126423482	126423483	chr10:126423483:C:T	rs35124467	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr10	126560719	126560720	chr10:126560720:G:T	rs72839026	G	T	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	126598061	126598062	chr10:126598062:A:G	rs2804424	A	G	C	Sox1.mouse_HMG_3	2	1	+	7.039314045324566	0.13055926600934642	TCAATGGCATTCC
chr10	126733581	126733582	chr10:126733582:A:C	rs11245119	A	C	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr10	126900454	126900455	chr10:126900455:A:G	rs55952399	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.725308133998068	0.8383986261975604	TCAGTTTCATTGA
chr10	126908931	126908932	chr10:126908932:C:G	rs139057052	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	126927291	126927292	chr10:126927292:G:A	rs61875487	G	A	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	126950473	126950474	chr10:126950474:T:C	rs934756832	T	C	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr10	127022883	127022884	chr10:127022884:A:G	rs2275535	A	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr10	127022910	127022911	chr10:127022911:C:T	rs2275536	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	127156212	127156213	chr10:127156213:A:G	rs75023144	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.052477077741333	-1.8562777015738856	TCACTTGCATTAG
chr10	127391239	127391240	chr10:127391240:T:G	rs943210	T	G	G	Sox1.mouse_HMG_3	5	1	+	5.142814994489864	4.633725121504984	TCAATTTCATTTC
chr10	127418393	127418394	chr10:127418394:T:C	rs2229600	T	C	C	Sox1.mouse_HMG_3	2	1	-	7.12509090707127	0.21633612775604893	TCAATGGCATTCT
chr10	127449750	127449751	chr10:127449751:G:C	rs55798271	G	C	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr10	127449779	127449780	chr10:127449780:T:A	rs11018104	T	A	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr10	127450874	127450875	chr10:127450875:C:G	rs952199	C	G	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr10	127549086	127549087	chr10:127549087:T:G	rs7894110	T	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	128094873	128094874	chr10:128094874:T:G	rs71474249	T	G	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	128095853	128095854	chr10:128095854:A:G	rs11599823	A	G	G	Sox1.mouse_HMG_3	10	1	-	6.982923880951928	2.3477110851473144	TTACTGGCATTGA
chr10	128095861	128095862	chr10:128095862:T:G	rs6482657	T	G	G	Sox1.mouse_HMG_3	2	1	-	6.982923880951928	0.07416910163670853	TTACTGGCATTGA
chr10	128127721	128127722	chr10:128127722:C:T	rs2387328	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr10	128140568	128140569	chr10:128140569:G:A	rs6482658	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr10	128169730	128169731	chr10:128169731:T:A	rs11016113	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.964361859409548	-1.9443929199056722	TCACTTTCATTAG
chr10	128196314	128196315	chr10:128196315:T:C	rs6482665	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr10	128377497	128377498	chr10:128377498:T:C	rs11016203	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr10	128398965	128398966	chr10:128398966:A:T	rs11016230	A	T	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr10	128473820	128473821	chr10:128473821:A:G	rs12411816	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	128546715	128546716	chr10:128546716:T:A	rs12258943	T	A	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr10	128633052	128633053	chr10:128633053:G:A	rs11016397	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	128872088	128872089	chr10:128872089:A:C	rs76326952	A	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	128883786	128883787	chr10:128883787:G:A	rs537040823	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	128959307	128959308	chr10:128959308:T:C	rs10829526	T	C	T	Sox1.mouse_HMG_3	6	1	-	5.2454471529547515	4.768931213299528	TCATTAACAGTGA
chr10	129061801	129061802	chr10:129061802:G:A	rs77864537	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr10	129139984	129139985	chr10:129139985:A:G	rs60984334	A	G	a	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr10	129192709	129192710	chr10:129192710:A:G	rs73388493	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr10	129323544	129323545	chr10:129323545:C:T	rs72831461	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	129412750	129412751	chr10:129412751:C:T	rs11016783	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr10	129510307	129510308	chr10:129510308:C:G	rs1537691	C	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	129614790	129614791	chr10:129614791:C:G	rs12777397	C	G	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr10	129802889	129802890	chr10:129802890:A:G	rs11016948	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr10	129946902	129946903	chr10:129946903:T:C	rs10829664	T	C	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr10	129946912	129946913	chr10:129946913:C:T	rs150599731	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	129981365	129981366	chr10:129981366:C:T	rs10829672	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr10	129981374	129981375	chr10:129981375:A:G	rs642073	A	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	130172401	130172402	chr10:130172402:G:C	rs1016374	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr10	130404891	130404892	chr10:130404892:T:A	rs10430608	T	A	A	Sox1.mouse_HMG_3	11	1	-	5.590983848318546	2.8165218816970854	ACAATAACATTAG
chr10	130474969	130474970	chr10:130474970:G:A	rs74160386	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr10	130484382	130484383	chr10:130484383:T:C	rs2484214	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr10	130493703	130493704	chr10:130493704:A:G	rs4751209	A	G	a	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr10	130516899	130516900	chr10:130516900:T:C	rs7921937	T	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr10	130607652	130607653	chr10:130607653:A:G	rs6482814	A	G	G	Sox1.mouse_HMG_3	2	1	+	4.437339657674865	-2.471415121640355	TCAGTTTCATTGG
chr10	130636218	130636219	chr10:130636219:A:C	rs1176472	A	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr10	130708698	130708699	chr10:130708699:A:G	rs12571561	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.199517554478831	-2.6873919533216766	TCACCACCATTGC
chr10	130708704	130708705	chr10:130708705:G:A	rs59684255	G	A	G	Sox1.mouse_HMG_3	3	1	-	4.199517554478831	-0.4373450782417494	TCACCACCATTGC
chr10	130748744	130748745	chr10:130748745:G:A	rs112908837	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr10	130820528	130820529	chr10:130820529:A:G	rs7908186	A	G	a	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr10	131011258	131011259	chr10:131011259:C:T	rs80035223	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr10	131088792	131088793	chr10:131088793:G:A	rs75923096	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr10	131090192	131090193	chr10:131090193:T:C	rs7902801	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr10	131122980	131122981	chr10:131122981:G:C	rs12415526	G	C	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr10	131143069	131143070	chr10:131143070:C:T	rs77020834	C	T	C	Sox1.mouse_HMG_3	12	1	-	4.018014839937738	7.30598331626094	TCACTGGCATCGG
chr10	131170129	131170130	chr10:131170130:C:A	rs2918152	C	A	A	Sox1.mouse_HMG_3	1	1	+	7.217868097929156	0.31511531056981057	TCACAGTCATTGA
chr10	131170137	131170138	chr10:131170138:T:C	rs7912888	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.217868097929156	0.33095859012864737	TCACAGTCATTGA
chr10	131228054	131228055	chr10:131228055:G:A	rs117358560	G	A	G	Sox1.mouse_HMG_3	6	1	+	4.805115575527125	5.281631515182347	TCAGTGGCATTGC
chr10	131244715	131244716	chr10:131244716:A:C	rs73398434	A	C	C	Sox1.mouse_HMG_3	3	1	+	9.89511044223605	7.730945913039626	TCAAAGCCATTGA
chr10	131244743	131244744	chr10:131244744:A:G	rs72841353	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr10	131326697	131326698	chr10:131326698:A:G	rs4609515	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr10	131332600	131332601	chr10:131332601:A:G	rs11017884	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.9495676441256276	1.3143548483210137	TCAATATCACTGT
chr10	131478300	131478301	chr10:131478301:G:T	rs10830012	G	T	T	Sox1.mouse_HMG_3	11	1	+	5.933724364566791	-0.9505780330405682	TAAATATCATTGT
chr10	131478303	131478304	chr10:131478304:T:C	rs10830013	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr10	131486075	131486076	chr10:131486076:A:C	rs74429978	A	C	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	131539618	131539619	chr10:131539619:G:A	rs11018026	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr10	131579085	131579086	chr10:131579086:A:G	rs75002802	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr10	131641197	131641198	chr10:131641198:A:T	rs72853635	A	T	a	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr10	131674180	131674181	chr10:131674181:C:G	rs12573695	C	G	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr10	131790276	131790277	chr10:131790277:A:G	rs4897749	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr10	131940697	131940698	chr10:131940698:C:T	rs148713648	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr10	132109946	132109947	chr10:132109947:C:A	chr10:132109947:C:A	C	A	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr10	132109959	132109960	chr10:132109960:G:A	rs78159143	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr10	132140734	132140735	chr10:132140735:C:T	rs9733882	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr10	132265140	132265141	chr10:132265141:G:A	rs11146284	G	A	-	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr10	132265157	132265158	chr10:132265158:T:C	rs34154642	T	C	t	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr10	132377500	132377501	chr10:132377501:A:C	rs4443996	A	C	C	Sox1.mouse_HMG_3	8	1	+	5.45740392952902	-1.4513508497862007	TCCCTGCCATTGA
chr10	132628329	132628330	chr10:132628330:A:G	rs376202681	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.718650194111307	-2.1682593136892017	TCACAGTCATTGC
chr10	132867588	132867589	chr10:132867589:C:T	rs4880454	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr10	132878605	132878606	chr10:132878606:A:G	rs4880459	A	G	G	Sox1.mouse_HMG_3	8	1	+	6.086039968268302	-0.8227148110469185	AGAATAACATTGA
chr10	133024697	133024698	chr10:133024698:G:A	rs61861005	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr10	133537857	133537858	chr10:133537858:C:T	rs2515641	C	T	.	Sox1.mouse_HMG_3	1	1	+	4.4227953951749015	-0.5354768359387252	TCAAGTACAGTGA
chr11	464290	464291	chr11:464291:C:T	rs6598017	C	T	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr11	511579	511580	chr11:511580:C:T	rs3993797	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	711205	711206	chr11:711206:G:T	rs373368595	G	T	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	737406	737407	chr11:737407:C:T	rs77425439	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr11	810867	810868	chr11:810868:C:T	chr11:810868:C:T	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr11	889408	889409	chr11:889409:C:T	rs116814669	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr11	1017595	1017596	chr11:1017596:T:G	rs201522029	T	G	-	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr11	1090035	1090036	chr11:1090036:T:C	rs10902088	T	C	C	Sox1.mouse_HMG_3	4	1	+	4.903319153337801	-1.996776868276846	TCAATGGCATCCA
chr11	1308607	1308608	chr11:1308608:T:C	rs5743856	T	C	t	Sox1.mouse_HMG_3	3	1	-	4.319438202027949	-2.4815889598890566	TCTATAGCATTAA
chr11	1351703	1351704	chr11:1351704:C:T	rs12290143	C	T	c	Sox1.mouse_HMG_3	7	1	+	5.457403929529018	1.824936438433826	TCACTGCCTTTGA
chr11	1351705	1351706	chr11:1351706:T:C	rs12294337	T	C	N	Sox1.mouse_HMG_3	9	1	+	5.457403929529018	-1.4295055782714887	TCACTGCCTTTGA
chr11	1351705	1351706	chr11:1351706:T:G	chr11:1351706:T:G	T	G	N	Sox1.mouse_HMG_3	9	1	+	5.457403929529018	1.6893288924164855	TCACTGCCTTTGA
chr11	1362976	1362977	chr11:1362977:A:G	rs6421029	A	G	g	Sox1.mouse_HMG_3	8	1	+	9.158726887593124	2.2499721082779036	TCACTTACAGTGA
chr11	1568469	1568470	chr11:1568470:T:A	rs115277124	T	A	T	Sox1.mouse_HMG_3	5	1	-	6.891330879584771	6.167747981502563	ACAATACTATTGT
chr11	1615792	1615793	chr11:1615793:C:A	rs11036472	C	A	c	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr11	1640096	1640097	chr11:1640097:C:T	rs78651552	C	T	c	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	1693233	1693234	chr11:1693234:G:A	rs16927505	G	A	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	1736772	1736773	chr11:1736773:G:C	rs1040480641	G	C	G	Sox1.mouse_HMG_3	6	1	-	8.130658331710325	7.7056957349316395	TCCATTCCATTGA
chr11	1891299	1891300	chr11:1891300:C:G	rs145328629	C	G	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr11	1908771	1908772	chr11:1908772:G:T	rs758647496	G	T	g	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	2549614	2549615	chr11:2549615:G:T	rs12292841	G	T	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	2667543	2667544	chr11:2667544:T:G	rs7120573	T	G	T	Sox1.mouse_HMG_3	2	1	-	6.156868656710257	-0.751886122604964	ACAATATCAGTGC
chr11	2945765	2945766	chr11:2945766:T:C	rs73406350	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr11	3052419	3052420	chr11:3052420:T:C	rs11827189	T	C	T	Sox1.mouse_HMG_3	5	1	-	8.878952324641748	7.64627955357466	ACAATAACATTAA
chr11	3207242	3207243	chr11:3207243:T:A	rs11025941	T	A	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	3626297	3626298	chr11:3626298:A:C	rs17173897	A	C	N	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	3626299	3626300	chr11:3626300:C:G	rs17173896	C	G	c	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	3736997	3736998	chr11:3736998:A:G	rs276909	A	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	3795980	3795981	chr11:3795981:G:T	rs12283708	G	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr11	3801342	3801343	chr11:3801343:T:G	rs10767606	T	G	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr11	3882897	3882898	chr11:3882898:A:C	rs12574293	A	C	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	4495671	4495672	chr11:4495672:C:T	rs138126059	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr11	5059003	5059004	chr11:5059004:T:C	rs2445333	T	C	.	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr11	5196478	5196479	chr11:5196479:G:A	rs12804890	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	5364314	5364315	chr11:5364315:C:A	rs2736552	C	A	A	Sox1.mouse_HMG_3	6	1	+	5.014058140623293	5.065611483499831	ACAAAACCATTGG
chr11	5427312	5427313	chr11:5427313:G:A	rs11037417	G	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	5677724	5677725	chr11:5677725:A:G	rs10769173	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr11	5692306	5692307	chr11:5692307:C:A	rs16934531	C	A	A	Sox1.mouse_HMG_3	11	1	-	8.201264356121522	1.3169619585141628	TCAAAATCATTGT
chr11	5815556	5815557	chr11:5815557:T:A	rs11039135	T	A	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr11	5815608	5815609	chr11:5815609:A:C	rs10838673	A	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	5957108	5957109	chr11:5957109:A:C	rs7928434	A	C	C	Sox1.mouse_HMG_3	2	1	+	5.14760991873149	-1.7611448605837308	ACAATTCCATTCC
chr11	5957112	5957113	chr11:5957113:C:G	rs7942132	C	G	G	Sox1.mouse_HMG_3	6	1	+	5.14760991873149	4.722647321952804	ACAATTCCATTCC
chr11	6124402	6124403	chr11:6124403:G:A	rs72900422	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	6315043	6315044	chr11:6315044:T:C	rs2634183	T	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	6602950	6602951	chr11:6602951:T:C	rs4758438	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	6609310	6609311	chr11:6609311:C:T	rs140322345	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	6677175	6677176	chr11:6677176:T:C	rs142644037	T	C	T	Sox1.mouse_HMG_3	2	1	-	9.800215472597756	2.8914606932825353	ACAATTCCATTGT
chr11	6707622	6707623	chr11:6707623:C:T	rs12361973	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr11	6747423	6747424	chr11:6747424:A:G	rs10839610	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr11	6767367	6767368	chr11:6767368:G:A	rs7949226	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	6868904	6868905	chr11:6868905:A:G	rs4300376	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.427165819426163	-2.4729302021884836	TCATTAGCATTAA
chr11	6969084	6969085	chr11:6969085:G:A	rs181587370	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr11	7266586	7266587	chr11:7266587:G:A	rs10839754	G	A	A	Sox1.mouse_HMG_3	6	1	+	5.292254692860492	5.768770632515716	TCGATTGCATTGT
chr11	7309472	7309473	chr11:7309473:A:G	rs11041306	A	G	A	Sox1.mouse_HMG_3	4	1	-	11.756119984560558	4.856023962945912	ACAATGACATTGA
chr11	7511996	7511997	chr11:7511997:A:G	rs4370912	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	7564878	7564879	chr11:7564879:T:A	rs4132103	T	A	T	Sox1.mouse_HMG_3	5	1	+	3.489121170210763	4.212704068292972	TCACTTCCACTGC
chr11	7850154	7850155	chr11:7850155:C:T	rs73408495	C	T	C	Sox1.mouse_HMG_3	12	1	-	4.918695579971519	8.206664056294722	TCAATTACATTTG
chr11	7857720	7857721	chr11:7857721:C:G	rs7126830	C	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr11	7909830	7909831	chr11:7909831:T:G	rs539539434	T	G	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	8035036	8035037	chr11:8035037:C:T	rs190108457	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	8051688	8051689	chr11:8051689:C:T	rs7949880	C	T	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	8055760	8055761	chr11:8055761:C:T	rs58666270	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr11	8065367	8065368	chr11:8065368:T:C	rs55961435	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr11	8300174	8300175	chr11:8300175:T:C	rs11041854	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	8868082	8868083	chr11:8868083:T:C	rs2653567	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr11	8912305	8912306	chr11:8912306:T:G	rs2742519	T	G	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr11	8912342	8912343	chr11:8912343:T:G	rs79634295	T	G	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr11	8988458	8988459	chr11:8988459:A:C	rs2568047	A	C	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr11	9012371	9012372	chr11:9012372:G:A	chr11:9012372:G:A	G	A	C	Sox1.mouse_HMG_3	7	1	-	3.7745549577001465	0.14208746660495408	TCACTAGCATGGC
chr11	9023219	9023220	chr11:9023220:G:A	rs932287	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr11	9600866	9600867	chr11:9600867:G:A	rs11042440	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr11	9936930	9936931	chr11:9936931:T:C	rs11042557	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr11	10149852	10149853	chr11:10149853:C:T	rs11042645	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.284133141238696	1.6516656501435025	TCAATGACATTTT
chr11	10207299	10207300	chr11:10207300:G:A	rs1867135	G	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	10244329	10244330	chr11:10244330:G:A	rs72850420	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	10255957	10255958	chr11:10255958:T:C	rs16907612	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	10255978	10255979	chr11:10255979:A:C	rs187033868	A	C	A	Sox1.mouse_HMG_3	12	1	+	4.29607129537354	1.796853391555692	TCAACACCATTCA
chr11	10439926	10439927	chr11:10439927:G:C	rs11042804	G	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	10583117	10583118	chr11:10583118:T:A	rs35487464	T	A	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr11	10610704	10610705	chr11:10610705:A:G	rs964426	A	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr11	10796304	10796305	chr11:10796305:A:C	rs142260364	A	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	10896731	10896732	chr11:10896732:A:C	rs2896567	A	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	11089977	11089978	chr11:11089978:T:C	rs17344332	T	C	t	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr11	11089987	11089988	chr11:11089988:T:C	rs17344367	T	C	C	Sox1.mouse_HMG_3	4	1	+	4.950417472785336	-1.9496785488293111	TCAGTTCCATTGG
chr11	11176703	11176704	chr11:11176704:T:C	rs2655103	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.1223505549075945	-1.7864042244076257	TCTATGCCATTGC
chr11	11291614	11291615	chr11:11291615:C:T	rs11601575	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr11	11429426	11429427	chr11:11429427:C:T	rs56340322	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr11	11451539	11451540	chr11:11451540:G:A	rs11827435	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr11	11451541	11451542	chr11:11451542:A:G	rs11822766	A	G	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr11	11589668	11589669	chr11:11589669:C:A	rs79543613	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr11	11659387	11659388	chr11:11659388:G:A	rs7480726	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	12138369	12138370	chr11:12138370:T:C	chr11:12138370:T:C	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	12147753	12147754	chr11:12147754:G:A	rs4644628	G	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	12565842	12565843	chr11:12565843:T:C	rs67512993	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	12569480	12569481	chr11:12569481:A:G	rs77503259	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	12578296	12578297	chr11:12578297:T:G	rs12271125	T	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr11	12818698	12818699	chr11:12818699:G:C	rs117169747	G	C	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	12865093	12865094	chr11:12865094:C:T	rs77455629	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr11	12865107	12865108	chr11:12865108:C:T	rs563340033	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr11	12865108	12865109	chr11:12865109:G:A	rs925791945	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr11	12968446	12968447	chr11:12968447:T:C	rs7129516	T	C	C	Sox1.mouse_HMG_3	4	1	+	6.500226731693264	-0.39986928992138515	TTAATTATATTGA
chr11	12973583	12973584	chr11:12973584:G:C	rs61878838	G	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr11	13000893	13000894	chr11:13000894:T:G	rs4320934	T	G	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr11	13000903	13000904	chr11:13000904:A:T	rs4434985	A	T	A	Sox1.mouse_HMG_3	9	1	-	6.500226731693264	-0.38668277610724355	TTAATTATATTGA
chr11	13000924	13000925	chr11:13000925:G:C	rs4328193	G	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	13210844	13210845	chr11:13210845:T:G	rs11022706	T	G	T	Sox1.mouse_HMG_3	2	1	-	5.479249201043732	-1.4295055782714878	TCACTGCCACTGA
chr11	13230493	13230494	chr11:13230494:T:C	rs12795870	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	13271361	13271362	chr11:13271362:T:C	rs1384030	T	C	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	13291224	13291225	chr11:13291225:C:T	rs7104985	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	13315948	13315949	chr11:13315949:A:G	rs567938223	A	G	G	Sox1.mouse_HMG_3	2	1	+	3.5617115181433268	-3.3470432611718937	TCACTTCCATGGT
chr11	13562236	13562237	chr11:13562237:G:A	rs10500786	G	A	-	Sox1.mouse_HMG_3	6	1	-	10.310863003588123	9.797785188477652	TCACTACCATTGG
chr11	13687335	13687336	chr11:13687336:T:C	rs12284332	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	14255093	14255094	chr11:14255094:G:A	rs782117476	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	14611943	14611944	chr11:14611944:G:A	rs11023274	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	14614769	14614770	chr11:14614770:T:G	rs10741651	T	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	15158537	15158538	chr11:15158538:A:C	rs80305551	A	C	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	15532811	15532812	chr11:15532812:A:G	rs11023623	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.385153325278779	-2.4158738366382266	TCCATGACATTGG
chr11	15548499	15548500	chr11:15548500:A:G	rs10766266	A	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	15573598	15573599	chr11:15573599:G:T	rs10832479	G	T	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	15751320	15751321	chr11:15751321:T:A	rs11608200	T	A	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr11	16099118	16099119	chr11:16099119:G:A	rs1045591262	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr11	16240555	16240556	chr11:16240556:T:C	rs75173225	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr11	16632385	16632386	chr11:16632386:T:C	rs560309121	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr11	16632423	16632424	chr11:16632424:T:C	rs72632980	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	16959665	16959666	chr11:16959666:A:G	rs17773381	A	G	A	Sox1.mouse_HMG_3	12	1	-	6.462645459236098	6.376868597489397	TCAATACCACTGT
chr11	17021250	17021251	chr11:17021251:A:T	rs142669360	A	T	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	17239370	17239371	chr11:17239371:A:T	rs10832750	A	T	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr11	17418042	17418043	chr11:17418043:C:T	rs7944045	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr11	17555077	17555078	chr11:17555078:G:A	rs7119889	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	17561228	17561229	chr11:17561229:G:A	rs79574062	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr11	17930961	17930962	chr11:17930962:C:A	rs139916386	C	A	C	Sox1.mouse_HMG_3	9	1	+	5.7048390422837265	5.7048390422837265	TCAATTACACTGC
chr11	18255267	18255268	chr11:18255268:G:A	rs12419567	G	A	g	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	18377000	18377001	chr11:18377001:T:C	rs12284667	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr11	18408000	18408001	chr11:18408001:C:G	rs3758683	C	G	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	18457663	18457664	chr11:18457664:C:T	rs11605559	C	T	T	Sox1.mouse_HMG_3	9	1	-	4.768931213299528	1.6500967426115534	TCATTAGCAGTGA
chr11	18721269	18721270	chr11:18721270:T:C	rs933207454	T	C	t	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr11	18803122	18803123	chr11:18803123:C:G	rs4601750	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr11	18956953	18956954	chr11:18956954:C:A	rs12363322	C	A	-	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr11	19200950	19200951	chr11:19200951:G:A	rs77820686	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	19418748	19418749	chr11:19418749:C:T	rs2702737	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr11	19665939	19665940	chr11:19665940:A:G	rs139356958	A	G	a	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	19719985	19719986	chr11:19719986:G:A	rs1004832110	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	19933647	19933648	chr11:19933648:G:C	rs16937251	G	C	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	20027350	20027351	chr11:20027351:G:A	rs557890798	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	20188849	20188850	chr11:20188850:T:C	rs12272729	T	C	T	Sox1.mouse_HMG_3	2	1	-	7.286252201614204	0.37749742229898553	TCACTGTCATTCA
chr11	20278530	20278531	chr11:20278531:T:C	rs2403580	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.570135942061558	-2.3386188372536623	ACAAAGCCATTGC
chr11	20368624	20368625	chr11:20368625:G:A	rs529137819	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	20484244	20484245	chr11:20484245:A:T	rs11025581	A	T	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	20647893	20647894	chr11:20647894:G:T	rs3740873	G	T	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr11	20901515	20901516	chr11:20901516:C:T	rs7105313	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	20954768	20954769	chr11:20954769:G:C	rs1400378	G	C	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr11	21476642	21476643	chr11:21476643:T:A	rs11026103	T	A	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	21583115	21583116	chr11:21583116:T:C	rs16908227	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr11	22343197	22343198	chr11:22343198:G:A	rs2246710	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	22509141	22509142	chr11:22509142:A:T	rs58261820	A	T	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	22625903	22625904	chr11:22625904:C:G	rs142028189	C	G	a	Sox1.mouse_HMG_3	11	1	-	5.986636366417933	1.41980767429837	CCAATAGCATTGC
chr11	22709358	22709359	chr11:22709359:G:A	rs400445	G	A	g	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	23233383	23233384	chr11:23233384:A:T	chr11:23233384:A:T	A	T	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr11	23267231	23267232	chr11:23267232:T:C	rs67449872	T	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr11	23413214	23413215	chr11:23413215:T:C	rs141509230	T	C	t	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	23455858	23455859	chr11:23455859:T:C	rs72873504	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.393812082979352	-2.5149426963358694	TCAAGGACATTGG
chr11	23480643	23480644	chr11:23480644:A:G	rs10500958	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	23984495	23984496	chr11:23984496:G:T	rs79351532	G	T	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	24549309	24549310	chr11:24549310:C:T	rs2403959	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	24625031	24625032	chr11:24625032:C:A	rs10767223	C	A	A	Sox1.mouse_HMG_3	6	1	-	3.9330897673314174	3.8449745489996308	TCAATGGCATTTG
chr11	24635118	24635119	chr11:24635119:C:A	rs56108236	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	24770572	24770573	chr11:24770573:G:C	rs2716538	G	C	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr11	25068718	25068719	chr11:25068719:A:G	rs1374134	A	G	a	Sox1.mouse_HMG_3	9	1	-	9.851768815474294	2.964859307673786	ACAATTACATTGT
chr11	25163700	25163701	chr11:25163701:G:A	rs10767315	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr11	25674914	25674915	chr11:25674915:T:G	rs1602916	T	G	T	Sox1.mouse_HMG_3	10	1	+	5.888835370831645	-1.0112606507830022	TCAAAAAAATTGA
chr11	25928172	25928173	chr11:25928173:G:A	rs7106427	G	A	G	Sox1.mouse_HMG_3	6	1	-	5.2317280092217775	4.718650194111307	TCACAGCCATTGC
chr11	26018089	26018090	chr11:26018090:G:C	rs12294404	G	C	G	Sox1.mouse_HMG_3	10	1	-	4.392111501572511	2.1272282757624783	ACACTGTCATCGA
chr11	26127348	26127349	chr11:26127349:A:C	rs12225031	A	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	26384705	26384706	chr11:26384706:A:G	rs182480027	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr11	26598110	26598111	chr11:26598111:G:A	rs10835008	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	26992484	26992485	chr11:26992485:T:C	rs7106676	T	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr11	26992507	26992508	chr11:26992508:A:C	rs754279777	A	C	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	27205043	27205044	chr11:27205044:G:T	rs10835128	G	T	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	27210073	27210074	chr11:27210074:T:G	rs12576337	T	G	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	27213016	27213017	chr11:27213017:A:G	rs1442929	A	G	a	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr11	27557398	27557399	chr11:27557399:A:T	rs1013442	A	T	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	28108943	28108944	chr11:28108944:G:T	rs112846910	G	T	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr11	28384212	28384213	chr11:28384213:A:G	rs78049516	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr11	28384223	28384224	chr11:28384224:G:C	rs7116476	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	28833246	28833247	chr11:28833247:C:T	rs10835414	C	T	T	Sox1.mouse_HMG_3	7	1	+	4.597112064686117	0.9646445735909257	TCAATACCAGTAG
chr11	28838874	28838875	chr11:28838875:A:T	rs61888343	A	T	A	Sox1.mouse_HMG_3	8	1	+	5.092168184635874	-1.8165865946793462	TAAATACCAGTGA
chr11	29125553	29125554	chr11:29125554:T:C	rs6484426	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr11	29162660	29162661	chr11:29162661:T:C	rs79915734	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	29601824	29601825	chr11:29601825:C:T	rs326706	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr11	29601830	29601831	chr11:29601831:T:C	rs181647901	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr11	29629751	29629752	chr11:29629752:A:G	rs704617	A	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr11	30023007	30023008	chr11:30023008:T:C	rs370340209	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	30206375	30206376	chr11:30206376:A:T	rs655183	A	T	A	Sox1.mouse_HMG_3	2	1	+	9.317678627688323	2.4089238483731035	TCACTATCAGTGA
chr11	30484659	30484660	chr11:30484660:G:A	rs574653	G	A	A	Sox1.mouse_HMG_3	7	1	-	6.0267059030910115	2.3942384119958167	TCACTTACATGGA
chr11	30694138	30694139	chr11:30694139:T:C	rs61886037	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	30855472	30855473	chr11:30855473:G:C	rs12280163	G	C	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr11	30855496	30855497	chr11:30855497:A:G	rs76834903	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	30855505	30855506	chr11:30855506:C:T	rs79794085	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	31209986	31209987	chr11:31209987:C:T	rs2774406	C	T	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	31650649	31650650	chr11:31650650:T:C	rs1232202	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr11	31650650	31650651	chr11:31650651:T:A	rs1013127881	T	A	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	31721267	31721268	chr11:31721268:G:A	rs7950909	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	31986836	31986837	chr11:31986837:G:A	rs224685	G	A	g	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	32069691	32069692	chr11:32069692:T:C	rs224608	T	C	C	Sox1.mouse_HMG_3	12	1	+	5.933724364566791	5.847947502820089	TAAATATCATTGT
chr11	32109338	32109339	chr11:32109339:C:T	rs142333054	C	T	C	Sox1.mouse_HMG_3	5	1	-	8.6922709227557	9.924943693822788	ACAATGTCATTGC
chr11	32449572	32449573	chr11:32449573:G:A	rs79443652	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	32960929	32960930	chr11:32960930:A:G	rs113631036	A	G	a	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	33064785	33064786	chr11:33064786:G:T	rs12221857	G	T	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	33808568	33808569	chr11:33808569:C:T	rs7950864	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr11	34047286	34047287	chr11:34047287:G:A	rs73486549	G	A	G	Sox1.mouse_HMG_3	1	1	-	3.873518333260989	-1.0847538978526379	TCACTAGCAATGT
chr11	34363918	34363919	chr11:34363919:T:G	rs1460324892	T	G	T	Sox1.mouse_HMG_3	0	1	+	8.203602712706603	1.3514235706133193	TCAAAAGCATTGC
chr11	34445942	34445943	chr11:34445943:T:C	rs482322	T	C	C	Sox1.mouse_HMG_3	2	1	-	7.507610271916191	0.598855492600971	TCAATATTATTAA
chr11	34447747	34447748	chr11:34447748:T:C	rs2284368	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	34840918	34840919	chr11:34840919:C:G	rs1553762	C	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr11	34840947	34840948	chr11:34840948:C:T	rs74697534	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	34890741	34890742	chr11:34890742:T:A	rs2915224	T	A	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	34930397	34930398	chr11:34930398:A:G	rs7924507	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr11	34977443	34977444	chr11:34977444:A:G	rs191497994	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.412409026322683	-1.388618135594324	TCAAATGCATTCA
chr11	34977936	34977937	chr11:34977937:G:T	rs733567	G	T	T	Sox1.mouse_HMG_3	1	1	-	8.072241429903197	1.1694886425438544	TCAATAATATTAA
chr11	35047047	35047048	chr11:35047048:A:G	rs563528273	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	35047058	35047059	chr11:35047059:C:G	rs2785155	C	G	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr11	35088127	35088128	chr11:35088128:G:A	rs1365057	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr11	35153497	35153498	chr11:35153498:T:C	rs353618	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	35180589	35180590	chr11:35180590:A:G	rs61881656	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	35223095	35223096	chr11:35223096:C:A	rs11033031	C	A	C	Sox1.mouse_HMG_3	6	1	+	8.854241229792532	8.90579457266907	TCTATACCATTGA
chr11	35268209	35268210	chr11:35268210:C:T	rs10444271	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	35291035	35291036	chr11:35291036:C:T	rs7929900	C	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr11	35415438	35415439	chr11:35415439:A:T	rs4755409	A	T	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr11	35530462	35530463	chr11:35530463:A:G	rs598515	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr11	35546373	35546374	chr11:35546374:C:T	rs16927686	C	T	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr11	36129655	36129656	chr11:36129656:T:C	rs55924292	T	C	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	36196952	36196953	chr11:36196953:A:T	rs3812770	A	T	T	Sox1.mouse_HMG_3	2	1	+	9.074202290395446	2.165447511080227	TCACTTTCATTGG
chr11	36267012	36267013	chr11:36267013:C:T	rs34700060	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr11	36455411	36455412	chr11:36455412:A:G	rs16928896	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.37436741994599	0.4874579121454832	TCACTGGCATTCA
chr11	36965132	36965133	chr11:36965133:C:G	rs58706519	C	G	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	36965152	36965153	chr11:36965153:T:C	rs117820342	T	C	T	Sox1.mouse_HMG_3	8	1	-	7.167785181774265	0.2590304024590453	TCAAATACATTGG
chr11	37278609	37278610	chr11:37278610:G:A	rs78974082	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	37394986	37394987	chr11:37394987:C:T	rs79359778	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	37605156	37605157	chr11:37605157:G:A	rs7932799	G	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	37916484	37916485	chr11:37916485:C:G	rs76547434	C	G	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr11	38461620	38461621	chr11:38461621:A:G	rs11603512	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.750288801173218	-0.15846597814200236	TCACTAACATAGA
chr11	38937724	38937725	chr11:38937725:A:G	rs6485041	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr11	39012004	39012005	chr11:39012005:A:G	rs1461630	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr11	39165502	39165503	chr11:39165503:A:G	rs598010	A	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	39306974	39306975	chr11:39306975:C:T	rs2088544	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	39692559	39692560	chr11:39692560:A:G	rs12288403	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.4259813940913535	-2.4609281137091537	TCATTCCCATTGA
chr11	40265722	40265723	chr11:40265723:C:T	rs72891085	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	40438018	40438019	chr11:40438019:A:G	rs10837410	A	G	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr11	40770938	40770939	chr11:40770939:A:T	rs11036069	A	T	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	41044555	41044556	chr11:41044556:A:G	rs355219	A	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	42612443	42612444	chr11:42612444:G:A	rs10768841	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr11	42632232	42632233	chr11:42632233:G:A	rs3924580	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	43573480	43573481	chr11:43573481:A:C	rs4755200	A	C	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	43903196	43903197	chr11:43903197:T:C	rs12576917	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	44036063	44036064	chr11:44036064:C:T	rs10838228	C	T	C	Sox1.mouse_HMG_3	11	1	-	3.5754048787945245	-0.5344355521913737	CCACTTACATTGC
chr11	44411366	44411367	chr11:44411367:A:G	rs12786821	A	G	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	44429484	44429485	chr11:44429485:G:A	rs1350479	G	A	A	Sox1.mouse_HMG_3	4	1	+	5.1310093126081675	7.395892538418201	TCAAGGCCATTGC
chr11	44554712	44554713	chr11:44554713:A:G	rs1991550	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr11	44564446	44564447	chr11:44564447:T:C	rs77359459	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.351967108772076	-0.5567876705431454	TCACTTCCATTAT
chr11	44564983	44564984	chr11:44564984:G:A	rs978812942	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	44654702	44654703	chr11:44654703:A:T	rs7925013	A	T	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr11	44685557	44685558	chr11:44685558:C:T	rs11038108	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr11	44817559	44817560	chr11:44817560:A:G	rs16938088	A	G	A	Sox1.mouse_HMG_3	8	1	-	3.937620697819106	3.937620697819106	TCAATTGCTGTGA
chr11	44971955	44971956	chr11:44971956:T:C	rs10838394	T	C	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	45097629	45097630	chr11:45097630:A:C	rs747614	A	C	C	Sox1.mouse_HMG_3	5	1	+	4.3010880402328215	-0.23489941286657112	TCACTACCATTTT
chr11	45140954	45140955	chr11:45140955:A:C	rs73464580	A	C	t	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr11	45284874	45284875	chr11:45284875:C:T	rs74958363	C	T	C	Sox1.mouse_HMG_3	3	1	-	4.955092822643554	11.756119984560558	ACAGTGACATTGA
chr11	45654813	45654814	chr11:45654814:T:C	rs11603055	T	C	t	Sox1.mouse_HMG_3	10	1	+	4.680815994967743	0.045603199163128716	TCATTATCAGTGA
chr11	45771522	45771523	chr11:45771523:G:A	rs189213615	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	45948532	45948533	chr11:45948533:T:C	rs2959103	T	C	C	Sox1.mouse_HMG_3	8	1	-	3.014761662933106	-3.893993116382114	GCACTGCCATTGC
chr11	45965216	45965217	chr11:45965217:T:C	rs139871532	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	47410151	47410152	chr11:47410152:A:G	rs61897432	A	G	A	Sox1.mouse_HMG_3	2	1	+	2.95818602571117	-3.9505687536040495	TCACTGCCCTTGC
chr11	47773249	47773250	chr11:47773250:C:T	rs10838763	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr11	47795737	47795738	chr11:47795738:A:G	rs2904127	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr11	47982371	47982372	chr11:47982372:A:G	rs72899720	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.9256880383457	2.038778530545192	ACAATTCCATTGG
chr11	48088240	48088241	chr11:48088241:G:A	rs7479361	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	48127902	48127903	chr11:48127903:A:G	rs907737329	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	48154278	48154279	chr11:48154279:G:A	rs10742836	G	A	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr11	49298704	49298705	chr11:49298705:G:A	rs10734597	G	A	g	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	50035303	50035304	chr11:50035304:G:A	rs879230807	G	A	g	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	55281971	55281972	chr11:55281972:C:G	rs2867259	C	G	c	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	56879138	56879139	chr11:56879139:A:G	rs72911818	A	G	a	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	56879149	56879150	chr11:56879150:T:C	rs72911819	T	C	T	Sox1.mouse_HMG_3	9	1	-	5.378300349744933	8.497134820432906	ACAATTACAATGA
chr11	57280123	57280124	chr11:57280124:C:T	rs12806656	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr11	57547687	57547688	chr11:57547688:C:T	rs1172189948	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr11	57776188	57776189	chr11:57776189:A:G	rs67812265	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr11	57776220	57776221	chr11:57776221:G:C	rs932617289	G	C	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr11	57979929	57979930	chr11:57979930:C:T	rs10792121	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	58143021	58143022	chr11:58143022:A:G	rs183525692	A	G	a	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	58334753	58334754	chr11:58334754:G:C	rs78052188	G	C	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr11	58615175	58615176	chr11:58615176:A:T	rs78176302	A	T	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr11	58641396	58641397	chr11:58641397:A:G	rs11229556	A	G	A	Sox1.mouse_HMG_3	10	1	-	6.417024494377285	1.7818116985726709	ACACTTCTATTGA
chr11	59025604	59025605	chr11:59025605:A:G	rs11229741	A	G	.	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr11	59537885	59537886	chr11:59537886:C:A	rs58389983	C	A	.	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	60156034	60156035	chr11:60156035:A:G	rs983392	A	G	.	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr11	60285825	60285826	chr11:60285826:T:G	rs1025939574	T	G	t	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	60364690	60364691	chr11:60364691:G:A	rs7952244	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	60803515	60803516	chr11:60803516:G:C	rs114905057	G	C	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr11	61028949	61028950	chr11:61028950:T:A	rs2905523	T	A	T	Sox1.mouse_HMG_3	3	1	-	4.385153325278779	-2.4158738366382266	TCTATGACATTGG
chr11	61046910	61046911	chr11:61046911:A:G	rs175103	A	G	G	Sox1.mouse_HMG_3	10	1	-	8.188213666542739	3.5530008707381238	TAAATTACATTGA
chr11	61068296	61068297	chr11:61068297:G:A	rs2905500	G	A	A	Sox1.mouse_HMG_3	6	1	-	2.980031297225883	2.466953482115412	TCACTGCCACTGC
chr11	61068309	61068310	chr11:61068310:G:A	rs175130	G	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr11	61071568	61071569	chr11:61071569:C:T	rs112975826	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	61891952	61891953	chr11:61891953:G:A	rs537500670	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr11	61891953	61891954	chr11:61891954:C:A	rs1222584820	C	A	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	61948825	61948826	chr11:61948826:C:T	rs571498322	C	T	C	Sox1.mouse_HMG_3	12	1	+	4.617931497497697	4.7037083592444	TCAAGGTCATTGC
chr11	61948834	61948835	chr11:61948835:G:T	rs974121	G	T	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	61971669	61971670	chr11:61971670:G:C	rs57398279	G	C	g	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	62013890	62013891	chr11:62013891:C:A	rs2089925	C	A	C	Sox1.mouse_HMG_3	7	1	+	4.817799413197885	-0.4727017721501463	TCAATAACAATAA
chr11	62058266	62058267	chr11:62058267:G:A	rs7926212	G	A	G	Sox1.mouse_HMG_3	2	1	+	2.958186025711171	9.86694080502639	TCGCTGCCATTGC
chr11	62058293	62058294	chr11:62058294:C:T	rs12577010	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	62080803	62080804	chr11:62080804:A:C	rs12420131	A	C	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	62126557	62126558	chr11:62126558:A:G	rs12362624	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	62126560	62126561	chr11:62126561:T:C	rs7927359	T	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	62203654	62203655	chr11:62203655:G:A	rs72915236	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr11	62725878	62725879	chr11:62725879:G:A	rs575555393	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr11	62914558	62914559	chr11:62914559:C:T	rs56995061	C	T	C	Sox1.mouse_HMG_3	7	1	+	3.864320104239465	0.23185261314427152	ACACTACCCTTGA
chr11	62965906	62965907	chr11:62965907:G:T	rs10897309	G	T	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr11	64135134	64135135	chr11:64135135:T:C	rs772300086	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr11	64317583	64317584	chr11:64317584:C:A	rs10128595	C	A	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr11	64317590	64317591	chr11:64317591:G:C	rs4930698	G	C	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr11	64317601	64317602	chr11:64317602:T:A	rs550819	T	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr11	64477603	64477604	chr11:64477604:C:T	rs652922	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr11	64477607	64477608	chr11:64477608:G:A	rs652934	G	A	G	Sox1.mouse_HMG_3	10	1	-	7.730945913039626	12.366158708844239	TCACTGCCATCGA
chr11	64504619	64504620	chr11:64504620:G:A	rs74585248	G	A	G	Sox1.mouse_HMG_3	3	1	-	4.718650194111307	0.08178756139072463	TCACAGTCATTGC
chr11	64917312	64917313	chr11:64917313:A:G	chr11:64917313:A:G	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	64930477	64930478	chr11:64930478:C:T	rs111934356	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	65391179	65391180	chr11:65391180:C:T	rs117446487	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	65506277	65506278	chr11:65506278:A:G	rs114089122	A	G	a	Sox1.mouse_HMG_3	3	1	+	5.515406818325419	-1.2856203435915874	ACAATATCTTTGA
chr11	65861427	65861428	chr11:65861428:C:T	rs34381357	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.041100090450907	0.9312596594650087	TCACTGGCATGGA
chr11	65882705	65882706	chr11:65882706:G:A	rs34035680	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	65911199	65911200	chr11:65911200:G:T	rs76214078	G	T	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr11	66201619	66201620	chr11:66201620:T:C	rs72936656	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.642032898307713	0.8410057363907089	TCAATTTCATTTA
chr11	66214374	66214375	chr11:66214375:C:T	rs3016319	C	T	C	Sox1.mouse_HMG_3	5	1	-	5.054286604265046	6.286959375332135	TCACTGGCAATGA
chr11	66246828	66246829	chr11:66246829:C:T	rs2155198	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	67187074	67187075	chr11:67187075:A:G	rs59551907	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr11	67268712	67268713	chr11:67268713:C:A	rs61758508	C	A	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr11	67452703	67452704	chr11:67452704:A:G	rs1638560	A	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr11	68037339	68037340	chr11:68037340:G:A	rs4147779	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr11	68343204	68343205	chr11:68343205:C:T	rs75696335	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	68370280	68370281	chr11:68370281:T:C	rs139048239	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr11	68734433	68734434	chr11:68734434:G:A	rs117400627	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	69066567	69066568	chr11:69066568:C:A	rs61887953	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	69208514	69208515	chr11:69208515:T:A	rs7929389	T	A	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr11	69208526	69208527	chr11:69208527:C:T	rs73526066	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr11	69229229	69229230	chr11:69229230:C:T	rs61881114	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr11	69283338	69283339	chr11:69283339:T:C	rs773287404	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	69335355	69335356	chr11:69335356:G:A	rs75100465	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr11	69444549	69444550	chr11:69444550:C:G	rs112407794	C	G	C	Sox1.mouse_HMG_3	1	1	+	5.655892809600335	-1.2468599777590081	TCAATTCCATTTC
chr11	69894346	69894347	chr11:69894347:C:T	rs149897361	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr11	69894363	69894364	chr11:69894364:G:A	rs28535338	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr11	69993210	69993211	chr11:69993211:C:G	rs4980708	C	G	C	Sox1.mouse_HMG_3	3	1	+	3.864320104239465	-0.7725425284811169	ACACTACCCTTGA
chr11	70031789	70031790	chr11:70031790:G:A	rs187832886	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	70031821	70031822	chr11:70031822:C:T	rs11237292	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	70074178	70074179	chr11:70074179:C:T	rs367928486	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr11	70367348	70367349	chr11:70367349:G:T	rs7950280	G	T	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	70432466	70432467	chr11:70432467:A:G	rs12795503	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	70518403	70518404	chr11:70518404:A:G	rs11236502	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	70577450	70577451	chr11:70577451:T:C	rs35410275	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.6532856994071885	-1.2468103222074596	TCAATTCCACTGC
chr11	70577470	70577471	chr11:70577471:A:G	chr11:70577471:A:G	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr11	71410442	71410443	chr11:71410443:A:G	rs58906324	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	71410827	71410828	chr11:71410828:A:C	rs111989006	A	C	A	Sox1.mouse_HMG_3	10	1	-	6.035449990009129	-0.8646460316055185	TCATTATCATTGT
chr11	71455290	71455291	chr11:71455291:A:G	rs1790373	A	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr11	71520032	71520033	chr11:71520033:T:A	rs57718633	T	A	T	Sox1.mouse_HMG_3	9	1	+	5.744548385410827	-1.1423611223896804	TTAAAAGCATTGA
chr11	71940914	71940915	chr11:71940915:G:C	rs2187496	G	C	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr11	72086375	72086376	chr11:72086376:T:A	rs597513	T	A	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	72123525	72123526	chr11:72123526:A:C	rs77334620	A	C	A	Sox1.mouse_HMG_3	2	1	+	5.118362612782004	-1.790392166533216	TCAATTTCCTTGC
chr11	72132652	72132653	chr11:72132653:G:A	rs12293195	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr11	72412276	72412277	chr11:72412277:C:T	rs137985443	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr11	72510679	72510680	chr11:72510680:C:T	rs12576041	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	72519722	72519723	chr11:72519723:C:T	rs570211343	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	72534966	72534967	chr11:72534967:G:A	rs11829009	G	A	a	Sox1.mouse_HMG_3	3	1	+	4.492880942676994	11.293908104593998	TCAGTGACATTGG
chr11	73174076	73174077	chr11:73174077:T:C	rs1783591	T	C	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	73297112	73297113	chr11:73297113:A:G	chr11:73297113:A:G	A	G	.	Sox1.mouse_HMG_3	8	1	+	3.9298996216059527	-2.978855157709268	TCACTGTCATCGG
chr11	73326043	73326044	chr11:73326044:G:A	rs79407935	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr11	73466139	73466140	chr11:73466140:G:A	rs11823008	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	73778966	73778967	chr11:73778967:C:T	rs12793550	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr11	73967899	73967900	chr11:73967900:T:C	rs4944871	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.823880418251601	-1.0848743610636187	ACACTGACAGTGA
chr11	74074280	74074281	chr11:74074281:T:C	rs4453265	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	74264760	74264761	chr11:74264761:G:A	rs79599822	G	A	G	Sox1.mouse_HMG_3	5	1	+	7.694967073116695	8.927639844183783	TCAATGACACTGA
chr11	74616946	74616947	chr11:74616947:A:G	rs12807883	A	G	A	Sox1.mouse_HMG_3	12	1	+	7.795342074599086	4.507373598275883	TCACTTTCATTCA
chr11	74732044	74732045	chr11:74732045:A:G	rs10899042	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.881195899315374	-0.9198312626016318	ACAATACCAGTGG
chr11	75087721	75087722	chr11:75087722:T:A	rs7117575	T	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	75236970	75236971	chr11:75236971:G:C	rs114625440	G	C	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr11	75262062	75262063	chr11:75262063:C:T	rs117132831	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	75291628	75291629	chr11:75291629:G:C	rs745373	G	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	75328927	75328928	chr11:75328928:C:T	rs148261905	C	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	75499727	75499728	chr11:75499728:G:A	rs1029431676	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	75510064	75510065	chr11:75510065:G:A	rs1790307	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr11	76123384	76123385	chr11:76123385:G:A	rs117752922	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr11	76124338	76124339	chr11:76124339:C:T	rs17134579	C	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	76151589	76151590	chr11:76151590:A:T	rs594913	A	T	A	Sox1.mouse_HMG_3	5	1	+	5.1405635427876515	4.416980644705443	ATAATAGCATTGT
chr11	76151616	76151617	chr11:76151617:T:C	rs612221	T	C	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr11	76300051	76300052	chr11:76300052:G:A	rs7949423	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr11	76300067	76300068	chr11:76300068:T:C	rs7939513	T	C	T	Sox1.mouse_HMG_3	6	1	+	3.734356618889724	4.247434434000194	CCACTATCATTGC
chr11	76443801	76443802	chr11:76443802:T:G	rs2282611	T	G	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr11	76625787	76625788	chr11:76625788:A:G	rs57441319	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.871817586953199	-1.929209574963806	ACAATGACATTTA
chr11	76650174	76650175	chr11:76650175:G:A	rs145753653	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr11	76863666	76863667	chr11:76863667:A:G	rs7942646	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	76903420	76903421	chr11:76903421:T:C	rs1025815	T	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	77111601	77111602	chr11:77111602:T:G	rs7951856	T	G	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	77300802	77300803	chr11:77300803:C:T	rs1793470	C	T	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr11	77463582	77463583	chr11:77463583:A:G	rs3015991	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr11	78325478	78325479	chr11:78325479:G:A	rs114650129	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	78428232	78428233	chr11:78428233:C:T	rs1355921	C	T	T	Sox1.mouse_HMG_3	5	1	-	4.968778496126408	6.201451267193496	TCACTGTCATTTA
chr11	78769165	78769166	chr11:78769166:G:C	rs10899567	G	C	G	Sox1.mouse_HMG_3	6	1	-	5.326747006868395	4.901784410089709	ACAATTCCAATGA
chr11	78802225	78802226	chr11:78802226:G:A	rs115875935	G	A	g	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr11	79437968	79437969	chr11:79437969:G:A	rs7116789	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	79462037	79462038	chr11:79462038:C:T	rs1912702	C	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr11	79564572	79564573	chr11:79564573:G:A	rs12364768	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr11	79698098	79698099	chr11:79698099:C:A	rs150386578	C	A	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	79982347	79982348	chr11:79982348:T:G	rs493589	T	G	T	Sox1.mouse_HMG_3	2	1	-	5.723219281595053	-1.185535497720166	TGAATTCCATTGT
chr11	80020649	80020650	chr11:80020650:C:A	rs12788037	C	A	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr11	80030870	80030871	chr11:80030871:C:T	rs1938874	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	80099186	80099187	chr11:80099187:C:A	rs140967147	C	A	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	80350690	80350691	chr11:80350691:G:A	rs34116051	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	80565007	80565008	chr11:80565008:C:G	rs74639567	C	G	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr11	80646893	80646894	chr11:80646894:T:C	rs17335782	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr11	80782808	80782809	chr11:80782809:C:T	rs952203742	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr11	80872302	80872303	chr11:80872303:A:C	rs56216516	A	C	A	Sox1.mouse_HMG_3	4	1	-	4.903681759081386	-1.9964142625332606	TCATTAACATTAA
chr11	80974137	80974138	chr11:80974138:A:T	rs12791153	A	T	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr11	81247120	81247121	chr11:81247121:C:A	rs4551792	C	A	C	Sox1.mouse_HMG_3	7	1	+	14.526335295915072	9.235834110567042	TCAATTTCATTGA
chr11	81303835	81303836	chr11:81303836:A:G	rs7123367	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	81412193	81412194	chr11:81412194:T:C	rs17142194	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	81644748	81644749	chr11:81644749:C:T	rs72940294	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	81644749	81644750	chr11:81644750:A:G	rs1945703	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	81763421	81763422	chr11:81763422:T:C	rs12807434	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	81897846	81897847	chr11:81897847:A:C	rs12365613	A	C	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	82046669	82046670	chr11:82046670:C:T	rs78414603	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	82073539	82073540	chr11:82073540:A:T	rs7102900	A	T	A	Sox1.mouse_HMG_3	0	1	+	5.627974418365065	8.453731014721706	ACAATAGCATTTA
chr11	82451407	82451408	chr11:82451408:C:T	rs4944391	C	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr11	82680171	82680172	chr11:82680172:C:G	rs912731258	C	G	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	82811042	82811043	chr11:82811043:A:C	rs2510282	A	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	82824418	82824419	chr11:82824419:G:A	rs7272	G	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	82824422	82824423	chr11:82824423:C:G	rs115163750	C	G	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	83034635	83034636	chr11:83034636:G:C	rs116654068	G	C	G	Sox1.mouse_HMG_3	8	1	-	3.851673061746276	3.851673061746276	TCACTAGCCTTGT
chr11	83257665	83257666	chr11:83257666:T:C	rs656515	T	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	83326466	83326467	chr11:83326467:G:A	rs77756822	G	A	G	Sox1.mouse_HMG_3	12	1	-	2.966844783411744	3.0526216451584465	TCACTGCCATGGC
chr11	83326469	83326470	chr11:83326470:A:G	rs78648964	A	G	A	Sox1.mouse_HMG_3	9	1	-	2.966844783411744	-3.9200647243887645	TCACTGCCATGGC
chr11	83337137	83337138	chr11:83337138:C:T	rs79236161	C	T	C	Sox1.mouse_HMG_3	7	1	+	3.8423674388064835	0.2098999477112904	TCAATGTCAATGG
chr11	83351485	83351486	chr11:83351486:G:A	rs4623925	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr11	83572528	83572529	chr11:83572529:C:T	rs661927	C	T	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	83614070	83614071	chr11:83614071:G:C	rs1228632	G	C	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr11	83663835	83663836	chr11:83663836:C:T	rs114961528	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	83827479	83827480	chr11:83827480:A:G	rs117179542	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	83999391	83999392	chr11:83999392:G:A	rs115884430	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr11	83999444	83999445	chr11:83999445:C:T	rs1601091	C	T	C	Sox1.mouse_HMG_3	3	1	+	9.952717666773093	5.315855034052511	TCACTGCCATTGT
chr11	84195223	84195224	chr11:84195224:T:C	rs12802109	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	84406863	84406864	chr11:84406864:G:T	rs504196	G	T	T	Sox1.mouse_HMG_3	2	1	-	7.617580516599855	14.526335295915072	TCCATTTCATTGA
chr11	84744315	84744316	chr11:84744316:T:G	rs6592199	T	G	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr11	84798981	84798982	chr11:84798982:C:T	rs188071279	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr11	85296092	85296093	chr11:85296093:T:C	rs186525400	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	85855922	85855923	chr11:85855923:G:C	rs7106682	G	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr11	85945858	85945859	chr11:85945859:T:C	rs34874199	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr11	85974402	85974403	chr11:85974403:G:C	rs574015523	G	C	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	86093389	86093390	chr11:86093390:G:A	rs12284629	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	86194464	86194465	chr11:86194465:G:A	rs11605034	G	A	g	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	86194470	86194471	chr11:86194471:T:G	rs7480511	T	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	86194672	86194673	chr11:86194673:G:A	rs10792837	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	86312919	86312920	chr11:86312920:G:C	rs291201	G	C	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr11	87124331	87124332	chr11:87124332:A:G	rs2512344	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr11	87148084	87148085	chr11:87148085:A:G	rs144715854	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	87148099	87148100	chr11:87148100:T:C	rs533056	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr11	87778645	87778646	chr11:87778646:G:A	rs76921037	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	88013852	88013853	chr11:88013853:C:G	rs2514251	C	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	88035375	88035376	chr11:88035376:T:C	rs596049	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.37830939426267	-2.5086001135378377	TCAGAAACATTGA
chr11	88086393	88086394	chr11:88086394:C:T	rs10831489	C	T	C	Sox1.mouse_HMG_3	11	1	-	6.440800187721386	2.3309597567354876	TCAATACCCTTGT
chr11	88523635	88523636	chr11:88523636:C:A	rs1045484863	C	A	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	88683247	88683248	chr11:88683248:A:G	rs7950074	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	88697366	88697367	chr11:88697367:C:T	rs1109101	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr11	89410859	89410860	chr11:89410860:T:G	rs1847144	T	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	89410866	89410867	chr11:89410867:C:A	rs1847143	C	A	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr11	90204989	90204990	chr11:90204990:A:G	chr11:90204990:A:G	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr11	90205008	90205009	chr11:90205009:A:C	rs377583702	A	C	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr11	90205019	90205020	chr11:90205020:C:T	rs150523040	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr11	90732714	90732715	chr11:90732715:A:G	rs12288659	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr11	90931147	90931148	chr11:90931148:A:C	rs12419648	A	C	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr11	91514222	91514223	chr11:91514223:A:G	rs7935947	A	G	G	Sox1.mouse_HMG_3	2	1	+	5.2041394745287075	-1.7046153047865136	TCAATTTCTTTGT
chr11	91786479	91786480	chr11:91786480:C:T	rs2250842	C	T	T	Sox1.mouse_HMG_3	1	1	+	5.284133141238696	0.32586091012506957	TCAATGACATTTT
chr11	91859887	91859888	chr11:91859888:G:C	rs4144909	G	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	92120530	92120531	chr11:92120531:C:A	rs11605206	C	A	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr11	92480730	92480731	chr11:92480731:G:A	rs487872	G	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr11	92738975	92738976	chr11:92738976:C:T	rs78102219	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	92740269	92740270	chr11:92740270:C:T	rs2852402	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	92805238	92805239	chr11:92805239:C:A	rs62622785	C	A	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	92805287	92805288	chr11:92805288:C:T	rs112113306	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr11	92920011	92920012	chr11:92920012:A:G	rs1387154	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.141310156690645	0.5060973608860304	TCTATAGCATTGG
chr11	92920027	92920028	chr11:92920028:G:A	rs1387155	G	A	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	93220218	93220219	chr11:93220219:C:G	rs76239026	C	G	G	Sox1.mouse_HMG_3	11	1	-	5.404144115351038	0.8373154232314737	TTACTAACATTGG
chr11	93239436	93239437	chr11:93239437:G:A	rs12803876	G	A	G	Sox1.mouse_HMG_3	9	1	+	6.182993044120053	3.064158573432078	TCACTTGCAGTGC
chr11	93289561	93289562	chr11:93289562:T:C	rs7110891	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr11	93372798	93372799	chr11:93372799:T:C	rs3020071	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr11	93589664	93589665	chr11:93589665:G:A	rs11020425	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	93821266	93821267	chr11:93821267:C:T	rs114437106	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	94032153	94032154	chr11:94032154:T:C	rs1518563	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.633725121504984	-2.266370900109662	TCAATGTCATTTC
chr11	94623869	94623870	chr11:94623870:A:G	rs10831253	A	G	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	94663013	94663014	chr11:94663014:T:C	rs506926	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.141310156690643	-1.659717005226362	TCAATAGCTTTGG
chr11	94663137	94663138	chr11:94663138:C:G	rs7115977	C	G	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	94665442	94665443	chr11:94665443:G:C	rs674106	G	C	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr11	94814581	94814582	chr11:94814582:C:A	rs10501816	C	A	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr11	94873221	94873222	chr11:94873222:C:T	rs59559050	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	95153295	95153296	chr11:95153296:G:T	rs618249	G	T	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr11	95153298	95153299	chr11:95153299:G:A	rs533856	G	A	g	Sox1.mouse_HMG_3	12	1	-	5.753112431914902	5.838889293661605	TCACTTTCATTAC
chr11	95234972	95234973	chr11:95234973:T:C	rs1458451	T	C	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr11	95282440	95282441	chr11:95282441:C:G	rs12283386	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr11	95573155	95573156	chr11:95573156:A:C	rs1939878	A	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	95600122	95600123	chr11:95600123:C:G	rs7109623	C	G	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	95600130	95600131	chr11:95600131:A:G	rs79249315	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	95661245	95661246	chr11:95661246:G:A	rs7946533	G	A	A	Sox1.mouse_HMG_3	11	1	+	6.380591421059384	2.270750990073485	ACAATAGTATTGC
chr11	95790033	95790034	chr11:95790034:G:C	chr11:95790034:G:C	G	C	G	Sox1.mouse_HMG_3	1	1	-	4.446745647459046	-2.456007139900299	TCAATTGGATTGG
chr11	95790047	95790048	chr11:95790048:G:A	rs117840238	G	A	g	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr11	95795726	95795727	chr11:95795727:G:T	rs12271427	G	T	g	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr11	95917340	95917341	chr11:95917341:T:C	rs116192403	T	C	T	Sox1.mouse_HMG_3	4	1	+	8.402436384986526	1.5023403633718786	ACAATAGCATTAA
chr11	96102664	96102665	chr11:96102665:A:G	rs80213565	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.443891863449929	-1.3571352984670768	ACAATATCATTCT
chr11	96168912	96168913	chr11:96168913:C:T	rs188915014	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr11	96207397	96207398	chr11:96207398:T:C	rs61901907	T	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr11	96228771	96228772	chr11:96228772:T:C	rs182811811	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.723219281595053	-1.163690226205454	TGAATTCCATTGT
chr11	96338471	96338472	chr11:96338472:T:C	rs117121900	T	C	T	Sox1.mouse_HMG_3	11	1	-	4.319438202027948	8.429278633013846	TCAATAGCCTTAA
chr11	96464896	96464897	chr11:96464897:A:G	rs185854323	A	G	A	Sox1.mouse_HMG_3	2	1	+	3.794065837209233	-3.1146889421059867	TCAAAAGCTTTGA
chr11	96602408	96602409	chr11:96602409:A:G	rs117508397	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	96905638	96905639	chr11:96905639:C:T	rs9633922	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr11	97231603	97231604	chr11:97231604:C:A	rs1863599	C	A	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr11	97345146	97345147	chr11:97345147:A:G	rs10895599	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	97568080	97568081	chr11:97568081:G:A	rs12288740	G	A	g	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr11	98070742	98070743	chr11:98070743:A:G	rs35632231	A	G	A	Sox1.mouse_HMG_3	9	1	-	10.586535760983006	3.6996262531825006	TCACTATCATTGC
chr11	98107971	98107972	chr11:98107972:G:A	rs73538350	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	98793490	98793491	chr11:98793491:C:T	rs146613707	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr11	99016041	99016042	chr11:99016042:G:A	rs764346810	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	99061401	99061402	chr11:99061402:T:C	rs7102254	T	C	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr11	99317150	99317151	chr11:99317151:T:G	rs1461677	T	G	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr11	99317152	99317153	chr11:99317153:T:G	rs1461678	T	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	99318597	99318598	chr11:99318598:T:C	rs17577573	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	99640817	99640818	chr11:99640818:C:G	rs688000	C	G	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	100256921	100256922	chr11:100256922:T:C	rs1944190	T	C	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr11	100256941	100256942	chr11:100256942:G:C	rs11223432	G	C	G	Sox1.mouse_HMG_3	3	1	-	4.8751495161281415	0.23828688340756132	TCACTGGCATTCC
chr11	100566690	100566691	chr11:100566691:A:G	rs1216577	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	100680185	100680186	chr11:100680186:T:C	rs10160533	T	C	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr11	100978941	100978942	chr11:100978942:A:C	rs10791440	A	C	A	Sox1.mouse_HMG_3	10	1	-	6.711733206765334	-0.1883628148493135	TCAATCACATTCA
chr11	101021022	101021023	chr11:101021023:T:G	rs529808	T	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr11	102303727	102303728	chr11:102303728:A:G	rs74855424	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	102345997	102345998	chr11:102345998:G:A	rs35206613	G	A	g	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	102503060	102503061	chr11:102503061:G:A	rs676452	G	A	G	Sox1.mouse_HMG_3	7	1	-	4.343988174894903	0.7115206837997117	GCAATACCATTCA
chr11	102530901	102530902	chr11:102530902:G:A	rs11568819	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	102530929	102530930	chr11:102530930:T:C	rs11568818	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.21655601966968	-1.6921987596455412	ACAAATACATTGT
chr11	102613067	102613068	chr11:102613068:A:G	chr11:102613068:A:G	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	102613075	102613076	chr11:102613076:A:G	chr11:102613076:A:G	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	102613094	102613095	chr11:102613095:T:C	rs1711413	T	C	C	Sox1.mouse_HMG_3	3	1	-	11.27133807391301	4.470310911996005	TCAATTCCAGTGA
chr11	102830644	102830645	chr11:102830645:C:T	rs553542	C	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr11	102844316	102844317	chr11:102844317:T:C	rs522616	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr11	102964689	102964690	chr11:102964690:G:A	rs579627	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	103450480	103450481	chr11:103450481:A:C	rs77850207	A	C	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	103463749	103463750	chr11:103463750:G:T	rs60614960	G	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	103529429	103529430	chr11:103529430:T:C	rs11820878	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	103529478	103529479	chr11:103529479:G:A	rs115605699	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr11	103622367	103622368	chr11:103622368:A:G	rs10488758	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr11	103662344	103662345	chr11:103662345:A:G	rs881352	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr11	103696410	103696411	chr11:103696411:G:A	rs12282209	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr11	103704112	103704113	chr11:103704113:A:G	rs79917023	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	103843409	103843410	chr11:103843410:T:C	rs78818179	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	104051257	104051258	chr11:104051258:C:T	rs61892152	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	104062151	104062152	chr11:104062152:T:C	rs142094633	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	104111104	104111105	chr11:104111105:A:G	rs168636	A	G	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr11	104371539	104371540	chr11:104371540:A:G	rs1488958	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	104488707	104488708	chr11:104488708:G:A	rs78526685	G	A	G	Sox1.mouse_HMG_3	12	1	-	6.361025317930558	6.446802179677261	TAAATACCATTGC
chr11	104504982	104504983	chr11:104504983:A:G	rs994491	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	104526581	104526582	chr11:104526582:G:C	rs1487687	G	C	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	104846074	104846075	chr11:104846075:T:A	rs12274726	T	A	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	105056900	105056901	chr11:105056901:G:A	rs521869	G	A	.	Sox1.mouse_HMG_3	3	1	-	6.880893391539319	2.2440307588187376	TCACTTATATTGT
chr11	105086105	105086106	chr11:105086106:A:G	rs1785866	A	G	.	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr11	105133144	105133145	chr11:105133145:T:A	rs17103763	T	A	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	105556889	105556890	chr11:105556890:A:T	rs1942973	A	T	T	Sox1.mouse_HMG_3	12	1	-	10.098835773901278	12.512276815972424	ACAATAGCATTGT
chr11	105726047	105726048	chr11:105726048:G:A	rs1954762	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	105975393	105975394	chr11:105975394:T:C	rs562546	T	C	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr11	105975395	105975396	chr11:105975396:G:A	rs10895888	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr11	106012886	106012887	chr11:106012887:T:C	rs2847181	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	106078373	106078374	chr11:106078374:C:A	chr11:106078374:C:A	C	A	c	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	106467164	106467165	chr11:106467165:A:G	rs34188293	A	G	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr11	106473631	106473632	chr11:106473632:G:A	rs7948675	G	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr11	106805538	106805539	chr11:106805539:C:G	rs114642868	C	G	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	106854235	106854236	chr11:106854236:A:G	rs11524439	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr11	106942091	106942092	chr11:106942092:C:T	rs7930761	C	T	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr11	106960929	106960930	chr11:106960930:T:C	rs12364403	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	107358009	107358010	chr11:107358010:G:A	rs537341	G	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	107439982	107439983	chr11:107439983:A:T	rs185669113	A	T	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	107439983	107439984	chr11:107439984:T:A	rs602625	T	A	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	107529987	107529988	chr11:107529988:T:C	rs61908181	T	C	T	Sox1.mouse_HMG_3	5	1	-	6.193599148941933	4.960926377874845	TCACTAGCATTCT
chr11	108093423	108093424	chr11:108093424:C:A	chr11:108093424:C:A	C	A	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	108561881	108561882	chr11:108561882:C:T	rs4437999	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr11	108561907	108561908	chr11:108561908:A:G	rs2256362	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr11	108569768	108569769	chr11:108569769:A:T	rs17693854	A	T	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr11	108625629	108625630	chr11:108625630:T:G	rs12293453	T	G	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	109184558	109184559	chr11:109184559:T:C	rs993882125	T	C	T	Sox1.mouse_HMG_3	10	1	+	9.948729724647503	5.313516928842889	TCACTTTCATTGT
chr11	109891059	109891060	chr11:109891060:C:T	rs561781	C	T	C	Sox1.mouse_HMG_3	11	1	-	6.098865767913857	1.9890253369279591	TCACTGCCAGTGC
chr11	109915464	109915465	chr11:109915465:T:G	rs6589095	T	G	G	Sox1.mouse_HMG_3	9	1	+	10.049491985472477	6.281416948359944	ACACTTCCATTGA
chr11	109961016	109961017	chr11:109961017:T:C	rs17110551	T	C	T	Sox1.mouse_HMG_3	6	1	-	5.953587398710406	5.477071459055184	ACAATCACATTGC
chr11	109994094	109994095	chr11:109994095:A:T	rs73547119	A	T	A	Sox1.mouse_HMG_3	0	1	-	4.3712420522983635	1.5454854559417213	TCAACTCCAGTGA
chr11	110091705	110091706	chr11:110091706:A:G	rs4561177	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	110132659	110132660	chr11:110132660:T:C	rs610984	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	110186636	110186637	chr11:110186637:C:T	rs11213298	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	110345946	110345947	chr11:110345947:T:C	rs1784634	T	C	C	Sox1.mouse_HMG_3	11	1	-	5.521470183208811	9.631310614194708	TCAATACTATTAC
chr11	110433878	110433879	chr11:110433879:T:C	rs7121928	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr11	110566643	110566644	chr11:110566644:C:T	rs11213485	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr11	110716223	110716224	chr11:110716224:T:C	rs17111661	T	C	t	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	110766587	110766588	chr11:110766588:T:C	rs118069550	T	C	T	Sox1.mouse_HMG_3	5	1	+	5.9664938025139005	2.1540892474967155	TCTCTTCCATTGA
chr11	110948341	110948342	chr11:110948342:A:G	rs59347061	A	G	A	Sox1.mouse_HMG_3	12	1	+	8.930246954376932	5.642278478053729	TCAATAACATTTA
chr11	110952738	110952739	chr11:110952739:A:G	rs1872764	A	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr11	111128784	111128785	chr11:111128785:A:G	rs10502131	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	111312431	111312432	chr11:111312432:A:G	rs4617622	A	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	111402960	111402961	chr11:111402961:T:A	rs10891259	T	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	112267437	112267438	chr11:112267438:C:T	rs2518368	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr11	112401271	112401272	chr11:112401272:G:A	rs1525407	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr11	112656856	112656857	chr11:112656857:G:A	rs10891407	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	112749300	112749301	chr11:112749301:T:C	rs111577874	T	C	T	Sox1.mouse_HMG_3	6	1	+	5.539859200033279	6.052937015143749	ACAATATCATTTA
chr11	113188743	113188744	chr11:113188744:C:G	rs74912479	C	G	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr11	113503290	113503291	chr11:113503291:G:A	rs10891564	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	113511149	113511150	chr11:113511150:C:G	rs35511553	C	G	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr11	113553971	113553972	chr11:113553972:A:G	rs141528070	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.28864077333183	-0.5982687344686777	ACACTCACATTGA
chr11	113668357	113668358	chr11:113668358:A:G	rs3934007	A	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	114127271	114127272	chr11:114127272:T:C	rs238889	T	C	C	Sox1.mouse_HMG_3	9	1	+	3.4672758986960512	-3.4196336091044564	TCTCTTCCATTGC
chr11	114127291	114127292	chr11:114127292:A:T	rs2735208	A	T	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr11	114148217	114148218	chr11:114148218:A:G	rs11214878	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.213557448967924	-2.673352058832583	ACAATGGCATTCC
chr11	114154809	114154810	chr11:114154810:A:C	rs188314578	A	C	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr11	114237243	114237244	chr11:114237244:T:C	rs420234	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	114262614	114262615	chr11:114262615:A:G	rs17116773	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	114273391	114273392	chr11:114273392:A:T	rs74688369	A	T	A	Sox1.mouse_HMG_3	10	1	-	5.0776473200667205	-1.8224487015479265	TCAATATCATTTG
chr11	114348327	114348328	chr11:114348328:G:C	rs2847491	G	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	114348342	114348343	chr11:114348343:G:T	rs183950011	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr11	114434250	114434251	chr11:114434251:T:C	rs521863	T	C	C	Sox1.mouse_HMG_3	10	1	+	4.6847302654157215	0.04951746961110781	ACAATCACAGTGA
chr11	114736170	114736171	chr11:114736171:G:A	rs117366190	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	114819728	114819729	chr11:114819729:G:T	rs4938141	G	T	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr11	115073362	115073363	chr11:115073363:C:T	rs2513678	C	T	T	Sox1.mouse_HMG_3	4	1	+	4.804612899383744	11.704708920998392	TCAACAACATTAA
chr11	115194171	115194172	chr11:115194172:C:G	rs1170043416	C	G	C	Sox1.mouse_HMG_3	6	1	-	6.712775352785773	7.137737949564457	ACAATGGCATTCA
chr11	115201636	115201637	chr11:115201637:A:G	rs77707760	A	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr11	115219206	115219207	chr11:115219207:T:C	rs6589487	T	C	T	Sox1.mouse_HMG_3	3	1	+	4.44669349794772	9.0835561306683	TCATTAACATTCA
chr11	115502645	115502646	chr11:115502646:C:A	rs77340638	C	A	C	Sox1.mouse_HMG_3	11	1	-	4.1369073742905496	-2.7473950233168103	TCAATTCCAGCGC
chr11	115622851	115622852	chr11:115622852:A:G	rs146936541	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	115984361	115984362	chr11:115984362:G:T	rs1262514	G	T	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr11	116063522	116063523	chr11:116063523:A:T	rs736287	A	T	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	116431530	116431531	chr11:116431531:A:G	rs11601357	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr11	116529426	116529427	chr11:116529427:C:T	rs762438434	C	T	C	Sox1.mouse_HMG_3	8	1	-	5.457403929529018	12.366158708844239	TCACTGCCGTTGA
chr11	116576827	116576828	chr11:116576828:G:A	rs12099414	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr11	116614865	116614866	chr11:116614866:T:A	rs477047	T	A	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	116830957	116830958	chr11:116830958:T:A	rs2070666	T	A	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	116879909	116879910	chr11:116879910:G:A	rs116724830	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	116912425	116912426	chr11:116912426:C:G	rs74700879	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr11	116930197	116930198	chr11:116930198:T:A	rs910685632	T	A	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr11	116940058	116940059	chr11:116940059:T:C	rs79394589	T	C	T	Sox1.mouse_HMG_3	0	1	-	4.724296907493311	0.6978743617566692	ACAATGCCATTCT
chr11	117058949	117058950	chr11:117058950:T:C	rs73576612	T	C	T	Sox1.mouse_HMG_3	9	1	-	5.475261258918142	8.594095729606115	TCACTTTCAATGA
chr11	117075521	117075522	chr11:117075522:C:T	rs12274388	C	T	C	Sox1.mouse_HMG_3	11	1	-	8.914453330369644	4.804612899383746	TCAATAACATAGA
chr11	117083848	117083849	chr11:117083849:C:T	rs10892071	C	T	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	117102263	117102264	chr11:117102264:A:G	rs12281115	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	117180201	117180202	chr11:117180202:C:T	rs12419178	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr11	117209881	117209882	chr11:117209882:A:G	rs377283412	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.329354117061543	-1.5794006622536778	ACAATTCCATTTA
chr11	117312933	117312934	chr11:117312934:C:T	rs593245	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	117426875	117426876	chr11:117426876:T:A	chr11:117426876:T:A	T	A	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr11	117565069	117565070	chr11:117565070:C:A	rs12789727	C	A	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr11	117729900	117729901	chr11:117729901:C:T	rs11600991	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	117823373	117823374	chr11:117823374:A:G	rs635706	A	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	118028135	118028136	chr11:118028136:G:A	rs10458939	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr11	118281536	118281537	chr11:118281537:T:A	rs117117171	T	A	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr11	118305381	118305382	chr11:118305382:A:G	rs3782040	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr11	118410702	118410703	chr11:118410703:A:C	rs60545357	A	C	C	Sox1.mouse_HMG_3	9	1	-	4.9012013745573935	1.1331263374448597	ACACATTCATTGA
chr11	118595231	118595232	chr11:118595232:A:C	rs76987598	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr11	118834944	118834945	chr11:118834945:A:G	rs649338	A	G	G	Sox1.mouse_HMG_3	10	1	-	6.101883247827141	1.4666704520225264	ACAATAACAATGA
chr11	118881468	118881469	chr11:118881469:T:C	rs61150131	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.462074745104003	-1.4248347626965052	TCACCTTCATTGA
chr11	118999122	118999123	chr11:118999123:A:G	rs61902079	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.086166192679999	-1.8139298289346484	TCCATACCAGTGA
chr11	119019189	119019190	chr11:119019190:T:G	rs781982243	T	G	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr11	119478819	119478820	chr11:119478820:G:A	rs611279	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	119854277	119854278	chr11:119854278:T:C	rs514212	T	C	A	Sox1.mouse_HMG_3	12	1	-	5.324293807990895	2.0363253316676926	TCAATTTCATCCA
chr11	119937342	119937343	chr11:119937343:G:A	rs1955021	G	A	A	Sox1.mouse_HMG_3	7	1	-	5.656151522741693	2.023684031646501	ACAATTACATTAC
chr11	120086842	120086843	chr11:120086843:T:C	rs185776522	T	C	T	Sox1.mouse_HMG_3	8	1	-	12.112894253843926	5.2041394745287075	TCAATTTCATTGT
chr11	120102152	120102153	chr11:120102153:T:G	rs7938843	T	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	120235376	120235377	chr11:120235377:G:T	rs947906	G	T	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	120235386	120235387	chr11:120235387:C:T	rs150711302	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.888835370831645	0.930563139718019	TCAAAAAAATTGA
chr11	120500808	120500809	chr11:120500809:T:C	rs7929360	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr11	120738254	120738255	chr11:120738255:A:G	rs752979	A	G	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr11	120829020	120829021	chr11:120829021:G:A	rs865864273	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr11	120912607	120912608	chr11:120912608:G:A	rs143524866	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	120932731	120932732	chr11:120932732:A:G	chr11:120932732:A:G	A	G	A	Sox1.mouse_HMG_3	8	1	+	7.6791237935578565	0.7703690142426363	TAAATGACATTGA
chr11	120987700	120987701	chr11:120987701:G:A	rs2282586	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr11	121117845	121117846	chr11:121117846:G:A	rs113129776	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	121364419	121364420	chr11:121364420:A:T	rs10790444	A	T	T	Sox1.mouse_HMG_3	4	1	-	5.481929878593279	0.8467170827886668	TCACTCATATTGA
chr11	121452767	121452768	chr11:121452768:G:C	rs578506	G	C	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	121485469	121485470	chr11:121485470:A:G	rs12276905	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr11	121514804	121514805	chr11:121514805:A:G	rs141310066	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr11	121572866	121572867	chr11:121572867:T:C	rs755547384	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.4227953951749015	-2.4773006264397464	TCAATTACAGAGA
chr11	121671567	121671568	chr11:121671568:G:C	rs370976282	G	C	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr11	121891418	121891419	chr11:121891419:C:T	rs2370643	C	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	121893199	121893200	chr11:121893200:C:T	rs17337418	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr11	121902046	121902047	chr11:121902047:G:A	rs3802910	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr11	121902083	121902084	chr11:121902084:T:A	rs3802909	T	A	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr11	121932805	121932806	chr11:121932806:T:A	rs1219444	T	A	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	121964576	121964577	chr11:121964577:C:T	rs75190200	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	121964593	121964594	chr11:121964594:C:G	rs12281773	C	G	C	Sox1.mouse_HMG_3	11	1	-	4.3382707979772235	-0.2285578941423405	TCAATTTCATGGG
chr11	122099560	122099561	chr11:122099561:C:T	rs643925	C	T	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr11	122114646	122114647	chr11:122114647:T:A	rs17126145	T	A	T	Sox1.mouse_HMG_3	8	1	-	6.691269242119041	-0.21748553719617747	TCAATTGCATCGG
chr11	122114658	122114659	chr11:122114659:A:G	rs630852	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr11	122177787	122177788	chr11:122177788:A:G	rs483319	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr11	122674302	122674303	chr11:122674303:C:G	rs11600391	C	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr11	122791772	122791773	chr11:122791773:T:C	rs11218812	T	C	T	Sox1.mouse_HMG_3	12	1	-	10.614705398192667	7.326736921869465	TCAAAATCATTGA
chr11	123057466	123057467	chr11:123057467:A:G	rs7948948	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr11	123057491	123057492	chr11:123057492:T:C	chr11:123057492:T:C	T	C	T	Sox1.mouse_HMG_3	0	1	-	4.879939138574997	0.8535165928383546	ACAATTGCTTTGA
chr11	123064378	123064379	chr11:123064379:A:G	rs2276078	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	123153120	123153121	chr11:123153121:G:A	rs11821710	G	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr11	123168529	123168530	chr11:123168530:G:C	rs114690317	G	C	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr11	123238659	123238660	chr11:123238660:C:T	rs556605154	C	T	c	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr11	123238760	123238761	chr11:123238761:G:A	rs484580	G	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr11	123393933	123393934	chr11:123393934:C:A	rs1943466	C	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr11	123536722	123536723	chr11:123536723:C:T	rs1794192	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	123559266	123559267	chr11:123559267:G:A	rs702737	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	123559281	123559282	chr11:123559282:C:G	rs702736	C	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr11	123799748	123799749	chr11:123799749:G:A	rs11605363	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr11	123815095	123815096	chr11:123815096:G:A	rs17127760	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr11	123838992	123838993	chr11:123838993:A:G	rs17682849	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	124177364	124177365	chr11:124177365:C:T	rs4936905	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	124328931	124328932	chr11:124328932:C:T	rs4057919	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	124826021	124826022	chr11:124826022:A:G	rs111285852	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr11	124836650	124836651	chr11:124836651:A:G	rs112005683	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr11	124915737	124915738	chr11:124915738:C:T	rs61465638	C	T	C	Sox1.mouse_HMG_3	4	1	-	4.29607129537354	6.560954521183575	TCAAGACCATTCA
chr11	125155018	125155019	chr11:125155019:C:T	rs12789521	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr11	125321946	125321947	chr11:125321947:T:C	rs10893370	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr11	125390909	125390910	chr11:125390910:C:G	rs12419130	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr11	125410144	125410145	chr11:125410145:G:A	rs3824919	G	A	g	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr11	125517626	125517627	chr11:125517627:G:A	rs189740772	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr11	125585664	125585665	chr11:125585665:T:C	rs111877163	T	C	T	Sox1.mouse_HMG_3	4	1	+	6.380591421059384	-0.5195046005552653	ACAATAGTATTGC
chr11	125689863	125689864	chr11:125689864:G:C	rs73616081	G	C	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr11	125981159	125981160	chr11:125981160:A:G	rs564214	A	G	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr11	126034827	126034828	chr11:126034828:A:G	chr11:126034828:A:G	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr11	126197772	126197773	chr11:126197773:C:T	rs183925341	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr11	126357827	126357828	chr11:126357828:G:T	rs7928577	G	T	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	126420497	126420498	chr11:126420498:G:A	rs117205359	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	126608412	126608413	chr11:126608413:T:A	rs479139	T	A	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr11	126608441	126608442	chr11:126608442:G:C	rs674875	G	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr11	126669729	126669730	chr11:126669730:C:T	rs11220579	C	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr11	126821935	126821936	chr11:126821936:A:C	rs939517	A	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr11	126915580	126915581	chr11:126915581:C:T	rs75596471	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr11	126915615	126915616	chr11:126915616:C:A	rs78688752	C	A	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	127161776	127161777	chr11:127161777:G:C	rs1944837	G	C	C	Sox1.mouse_HMG_3	5	1	+	4.797037380298033	1.4937226982657283	TCACTGTCAGTGG
chr11	127164091	127164092	chr11:127164092:C:T	rs2513425	C	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr11	127218319	127218320	chr11:127218320:A:T	rs4937227	A	T	A	Sox1.mouse_HMG_3	8	1	+	5.061853696059433	-1.8469010832557886	TCAATATCATAGG
chr11	127621026	127621027	chr11:127621027:C:T	rs74433549	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	127815696	127815697	chr11:127815697:A:T	rs1364787	A	T	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr11	127836504	127836505	chr11:127836505:T:C	rs12421672	T	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	128026579	128026580	chr11:128026580:A:G	rs1648176	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr11	128171686	128171687	chr11:128171687:G:A	rs7933438	G	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr11	128293312	128293313	chr11:128293313:C:T	rs34415928	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr11	128485255	128485256	chr11:128485256:G:A	rs10893878	G	A	A	Sox1.mouse_HMG_3	7	1	-	5.768770632515716	2.1363031414205227	TCAATTACCTTGT
chr11	128532401	128532402	chr11:128532402:G:T	rs114049684	G	T	g	Sox1.mouse_HMG_3	11	1	+	4.247434434000194	-2.636867963607165	GCACTACCATTGC
chr11	128533108	128533109	chr11:128533109:G:A	rs11825217	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr11	128723385	128723386	chr11:128723386:A:G	rs11221443	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr11	128834696	128834697	chr11:128834697:A:G	rs11221476	A	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr11	128854313	128854314	chr11:128854314:A:G	rs7925428	A	G	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	128983244	128983245	chr11:128983245:C:T	rs73029243	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr11	129276179	129276180	chr11:129276180:T:G	chr11:129276180:T:G	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr11	129369213	129369214	chr11:129369214:C:T	rs1456003547	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr11	129681497	129681498	chr11:129681498:A:G	rs11221802	A	G	a	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr11	129724125	129724126	chr11:129724126:G:A	rs504990	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr11	129927373	129927374	chr11:129927374:A:G	rs10791058	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.59184084855403	0.9566280527494153	ACAATAGTATTGG
chr11	130201003	130201004	chr11:130201004:A:G	rs513461	A	G	G	Sox1.mouse_HMG_3	10	1	-	9.797785188477652	5.16257239267304	TCACTATCATTGG
chr11	130633427	130633428	chr11:130633428:C:A	rs11825503	C	A	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr11	130793367	130793368	chr11:130793368:C:T	rs6590510	C	T	T	Sox1.mouse_HMG_3	6	1	+	5.995512191364508	5.482434376254037	TCACTTCGATTGA
chr11	130825876	130825877	chr11:130825877:C:T	rs114579854	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr11	130830640	130830641	chr11:130830641:C:T	rs75618525	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr11	130873938	130873939	chr11:130873939:T:C	rs75225772	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr11	130894553	130894554	chr11:130894554:G:T	rs11222379	G	T	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr11	131036859	131036860	chr11:131036860:T:C	rs1655489	T	C	C	Sox1.mouse_HMG_3	8	1	-	8.349822172382634	1.4410673930674134	TCAAGATCATTGA
chr11	131327535	131327536	chr11:131327536:T:A	rs2511505	T	A	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr11	131511502	131511503	chr11:131511503:T:C	rs415448	T	C	T	Sox1.mouse_HMG_3	8	1	-	3.8224718372215087	-3.086282942093712	GCACTAGCATTGC
chr11	131678631	131678632	chr11:131678632:G:A	rs2658833	G	A	A	Sox1.mouse_HMG_3	4	1	+	4.706046715829483	6.970929941639515	TCAAGGGCATTGC
chr11	131701505	131701506	chr11:131701506:G:C	rs2658863	G	C	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr11	131817952	131817953	chr11:131817953:G:A	rs7945015	G	A	A	Sox1.mouse_HMG_3	3	1	+	4.4259813940913535	11.227008556008359	TCAGTCCCATTGA
chr11	131881189	131881190	chr11:131881190:G:A	rs71483694	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr11	131898803	131898804	chr11:131898804:A:G	rs566596	A	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr11	132209263	132209264	chr11:132209264:T:C	rs6590630	T	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr11	132692598	132692599	chr11:132692599:G:A	rs3018396	G	A	G	Sox1.mouse_HMG_3	1	1	-	3.937620697819106	-1.02065153329452	TCTATTGCAGTGA
chr11	132714552	132714553	chr11:132714553:G:A	rs1793258	G	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr11	132910138	132910139	chr11:132910139:C:T	rs11223275	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr11	132910175	132910176	chr11:132910176:G:A	rs749422630	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr11	133916694	133916695	chr11:133916695:A:G	rs3824992	A	G	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr11	134037800	134037801	chr11:134037801:A:G	rs112727844	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr11	134037812	134037813	chr11:134037813:A:T	rs192023533	A	T	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr11	134119602	134119603	chr11:134119603:A:G	rs7946580	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr11	134449823	134449824	chr11:134449824:G:C	rs10128652	G	C	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr11	134481348	134481349	chr11:134481349:G:T	rs11223859	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr11	134481365	134481366	chr11:134481366:A:G	rs77636696	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	134481373	134481374	chr11:134481374:T:C	rs56291804	T	C	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr11	134491702	134491703	chr11:134491703:C:T	rs113079643	C	T	C	Sox1.mouse_HMG_3	3	1	+	4.018014839937738	-0.6188477927828433	TCACAGGCATTGG
chr11	134506727	134506728	chr11:134506728:A:G	rs11604268	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr11	134521698	134521699	chr11:134521699:C:T	rs12420612	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr11	134677381	134677382	chr11:134677382:G:A	rs61910800	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr11	134743267	134743268	chr11:134743268:C:T	chr11:134743268:C:T	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr11	134743276	134743277	chr11:134743277:C:T	rs7934611	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr11	134754776	134754777	chr11:134754777:A:G	rs10894870	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr11	134994644	134994645	chr11:134994645:A:G	chr11:134994645:A:G	A	G	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr11	134994658	134994659	chr11:134994659:G:A	rs76048371	G	A	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr11	135033688	135033689	chr11:135033689:C:T	rs12575376	C	T	c	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr12	49219	49220	chr12:49220:C:A	rs11061693	C	A	.	Sox1.mouse_HMG_3	1	1	-	5.310903727309556	7.255384283555275	AGAATTCCATTGA
chr12	54049	54050	chr12:54050:C:T	rs901013837	C	T	.	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr12	240539	240540	chr12:240540:A:C	rs61906962	A	C	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr12	304571	304572	chr12:304572:C:T	rs116970621	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	1307425	1307426	chr12:1307426:C:T	rs16928347	C	T	T	Sox1.mouse_HMG_3	9	1	-	8.344819216731393	5.2259847460434194	TCAATTTCAGTGT
chr12	1521388	1521389	chr12:1521389:A:G	rs12810561	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr12	1551976	1551977	chr12:1551977:A:G	rs7315539	A	G	G	Sox1.mouse_HMG_3	0	1	-	8.034922940466345	1.1827437983730618	TCAATTACAGTGG
chr12	1928139	1928140	chr12:1928140:C:T	rs117828485	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr12	1955467	1955468	chr12:1955468:A:G	rs35252166	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr12	2244240	2244241	chr12:2244241:C:A	rs77175673	C	A	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr12	2318423	2318424	chr12:2318424:C:T	rs141094695	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr12	2649552	2649553	chr12:2649553:T:C	rs216039	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	2649567	2649568	chr12:2649568:G:T	rs117202662	G	T	G	Sox1.mouse_HMG_3	6	1	-	4.511361540401474	4.562914883278012	TCACTGCCATTCG
chr12	2649573	2649574	chr12:2649574:A:T	rs216040	A	T	T	Sox1.mouse_HMG_3	0	1	-	4.511361540401474	1.6856049440448309	TCACTGCCATTCG
chr12	2676294	2676295	chr12:2676295:T:C	rs11062310	T	C	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	2782269	2782270	chr12:2782270:T:A	rs6489400	T	A	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	3003957	3003958	chr12:3003958:A:G	rs3825362	A	G	A	Sox1.mouse_HMG_3	8	1	+	2.966844783411744	-3.9419099959034773	TCACTGCCATGGC
chr12	3003972	3003973	chr12:3003973:C:T	rs11613745	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	3122776	3122777	chr12:3122777:T:C	rs7955810	T	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	3219244	3219245	chr12:3219245:T:C	rs73043504	T	C	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	3230263	3230264	chr12:3230264:C:T	rs3782813	C	T	C	Sox1.mouse_HMG_3	6	1	-	6.135991924404889	6.612507864060111	TCAAAAGCATTCA
chr12	3238458	3238459	chr12:3238459:G:A	rs79901044	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr12	3255569	3255570	chr12:3255570:C:T	rs76805954	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr12	3313169	3313170	chr12:3313170:T:A	rs116744312	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.952984872119121	-1.9557699071960992	TCACTGTCATGGA
chr12	3535414	3535415	chr12:3535415:G:A	rs578011616	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr12	3535432	3535433	chr12:3535433:T:G	rs11062710	T	G	T	Sox1.mouse_HMG_3	9	1	+	4.906188596232836	1.1381135591203029	TCACAAGTATTGA
chr12	3945837	3945838	chr12:3945838:G:C	rs7957080	G	C	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr12	4418155	4418156	chr12:4418156:C:T	rs2160875	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr12	4426607	4426608	chr12:4426608:T:C	rs12367170	T	C	A	Sox1.mouse_HMG_3	3	1	-	4.37846587727025	-2.4225612846467555	TCAAGCACATTGA
chr12	4426614	4426615	chr12:4426615:G:A	rs12368351	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	4590065	4590066	chr12:4590066:C:T	rs997868	C	T	c	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr12	4649621	4649622	chr12:4649622:A:G	rs2270134	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.824944907037393	-1.075151114577255	TCATTTCCATTGT
chr12	4836848	4836849	chr12:4836849:T:C	rs7955352	T	C	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr12	4857047	4857048	chr12:4857048:G:A	rs4631963	G	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	4947368	4947369	chr12:4947369:G:A	rs7955054	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr12	5065486	5065487	chr12:5065487:T:G	rs74779240	T	G	T	Sox1.mouse_HMG_3	0	1	-	5.1307791579229765	1.104356612186335	ACAAATACATTGC
chr12	5084131	5084132	chr12:5084132:A:G	chr12:5084132:A:G	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.842689855387123	-1.9583373065298841	TCCATTCCATTGG
chr12	5189350	5189351	chr12:5189351:C:T	rs2159601	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr12	5566605	5566606	chr12:5566606:G:A	rs79121802	G	A	G	Sox1.mouse_HMG_3	3	1	-	3.734356618889724	-0.9025060138308569	CCACTATCATTGC
chr12	5722141	5722142	chr12:5722142:A:G	rs11063835	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.375507759764879	-1.511401748035629	ACAAAATCATTGT
chr12	5807236	5807237	chr12:5807237:C:T	rs71579288	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr12	5807267	5807268	chr12:5807268:A:C	rs71579287	A	C	c	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	6171417	6171418	chr12:6171418:A:G	rs10744699	A	G	a	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr12	6473163	6473164	chr12:6473164:C:T	rs12316668	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr12	6543405	6543406	chr12:6543406:A:G	rs7132298	A	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr12	6684822	6684823	chr12:6684823:A:G	rs74057085	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	6725901	6725902	chr12:6725902:A:G	rs7487866	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr12	7064315	7064316	chr12:7064316:C:T	rs7965055	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	7069313	7069314	chr12:7069314:G:A	rs7963015	G	A	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr12	7083439	7083440	chr12:7083440:T:G	rs949843424	T	G	t	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	7571841	7571842	chr12:7571842:T:C	rs11054513	T	C	T	Sox1.mouse_HMG_3	2	1	-	8.607040191013079	1.6982854116978587	TCACTAGCATTCA
chr12	7584728	7584729	chr12:7584729:T:C	rs2377089	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	7679850	7679851	chr12:7679851:A:C	rs7979377	A	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr12	7907245	7907246	chr12:7907246:T:C	chr12:7907246:T:C	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr12	8389019	8389020	chr12:8389020:T:C	rs149903928	T	C	.	Sox1.mouse_HMG_3	9	1	+	7.126961070416451	0.24005156261594274	ACACTGCCATTGT
chr12	8396022	8396023	chr12:8396023:G:C	rs11535987	G	C	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr12	8449827	8449828	chr12:8449828:T:A	rs11045398	T	A	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	8692177	8692178	chr12:8692178:C:T	rs73053860	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr12	9385878	9385879	chr12:9385879:G:A	rs6487875	G	A	a	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	9390887	9390888	chr12:9390888:C:G	rs9634110	C	G	c	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	9449766	9449767	chr12:9449767:T:C	rs34364780	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr12	9449768	9449769	chr12:9449769:G:C	rs60859240	G	C	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr12	9449783	9449784	chr12:9449784:T:G	rs61914756	T	G	T	Sox1.mouse_HMG_3	10	1	+	4.6331769225391835	-2.2669190990754635	ACAATCCCAGTGA
chr12	9449786	9449787	chr12:9449787:G:C	rs10743730	G	C	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr12	9449803	9449804	chr12:9449804:A:C	rs77723291	A	C	a	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	9706566	9706567	chr12:9706567:G:A	rs921875987	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	9793506	9793507	chr12:9793507:C:T	chr12:9793507:C:T	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr12	9971933	9971934	chr12:9971934:T:C	rs1797526	T	C	-	Sox1.mouse_HMG_3	4	1	+	6.671448532326048	-0.22864748928859924	TCAATATAATTGG
chr12	10027430	10027431	chr12:10027431:T:A	rs10845021	T	A	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr12	10096498	10096499	chr12:10096499:T:C	rs10845039	T	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr12	10170217	10170218	chr12:10170218:T:C	rs2742114	T	C	.	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr12	10244375	10244376	chr12:10244376:A:G	chr12:10244376:A:G	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	10311417	10311418	chr12:10311418:T:A	rs17206564	T	A	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr12	10389126	10389127	chr12:10389127:T:G	rs58737658	T	G	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr12	10670308	10670309	chr12:10670309:T:C	rs7967162	T	C	c	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr12	10851668	10851669	chr12:10851669:A:G	rs11611410	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	11127134	11127135	chr12:11127135:G:A	rs201366803	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr12	11361690	11361691	chr12:11361691:T:C	rs10743948	T	C	t	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	11729327	11729328	chr12:11729328:A:G	rs1270942580	A	G	A	Sox1.mouse_HMG_3	7	1	-	5.139652678999969	8.77212017009516	TCAATTCTAGTGC
chr12	11822299	11822300	chr12:11822300:A:G	rs148910631	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr12	11963199	11963200	chr12:11963200:T:A	rs10772516	T	A	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr12	12094858	12094859	chr12:12094859:A:T	rs61739220	A	T	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr12	12268068	12268069	chr12:12268069:T:C	rs149015103	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	12379996	12379997	chr12:12379997:C:T	rs117937426	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr12	12470856	12470857	chr12:12470857:C:T	rs2287204	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr12	12715517	12715518	chr12:12715518:C:T	rs3759217	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr12	12894220	12894221	chr12:12894221:G:A	rs11055133	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	12966113	12966114	chr12:12966114:C:T	rs1642197	C	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr12	12983553	12983554	chr12:12983554:C:T	rs735688	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr12	13022903	13022904	chr12:13022904:G:A	rs542429385	G	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	13184023	13184024	chr12:13184024:T:C	rs10772628	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr12	13190900	13190901	chr12:13190901:G:A	rs5010913	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr12	13204330	13204331	chr12:13204331:G:A	rs4597146	G	A	A	Sox1.mouse_HMG_3	9	1	+	5.932749242191912	2.813914771503938	ACAATAACAGTGG
chr12	13426384	13426385	chr12:13426385:G:A	rs7135520	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr12	13431065	13431066	chr12:13431066:G:A	rs4763987	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	13465367	13465368	chr12:13465368:A:T	rs1457610	A	T	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	14235533	14235534	chr12:14235534:G:A	rs4763373	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	14411276	14411277	chr12:14411277:G:A	rs113137202	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.841945510864212	1.7321050798783144	TCCATATCATTGC
chr12	14418879	14418880	chr12:14418880:G:A	rs7967823	G	A	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr12	14766927	14766928	chr12:14766928:T:C	rs10846059	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.420138629430204	-2.4886161498850163	TAAATTACAGTGA
chr12	14766951	14766952	chr12:14766952:C:T	rs11837353	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	14774926	14774927	chr12:14774927:C:A	rs183427400	C	A	C	Sox1.mouse_HMG_3	6	1	-	8.203602712706603	8.115487494374818	TCAAAAGCATTGC
chr12	14834295	14834296	chr12:14834296:A:G	rs116844040	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr12	14834297	14834298	chr12:14834298:A:G	rs2287227	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr12	14858789	14858790	chr12:14858790:T:C	rs7971527	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr12	15171696	15171697	chr12:15171697:T:C	rs12815540	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	15364444	15364445	chr12:15364445:T:G	rs56029389	T	G	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr12	15535112	15535113	chr12:15535113:A:T	rs144765680	A	T	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr12	15980235	15980236	chr12:15980236:A:C	rs141283490	A	C	A	Sox1.mouse_HMG_3	0	1	-	5.297779463281737	-1.5543996788115466	TCAATAATATTTA
chr12	16194373	16194374	chr12:16194374:G:A	rs3942536	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	16767002	16767003	chr12:16767003:C:T	rs16912215	C	T	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr12	17090227	17090228	chr12:17090228:C:T	rs994882	C	T	C	Sox1.mouse_HMG_3	3	1	+	5.988339074028612	1.3514764413080311	TCACTTCCACTGA
chr12	17225508	17225509	chr12:17225509:A:G	rs35473923	A	G	A	Sox1.mouse_HMG_3	0	1	-	4.5068495983157035	-2.3453295437775803	TCAACTCTATTGA
chr12	17433003	17433004	chr12:17433004:G:T	rs1163954	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr12	17878890	17878891	chr12:17878891:G:T	rs11519181	G	T	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr12	18387444	18387445	chr12:18387445:G:A	rs12371012	G	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr12	18551073	18551074	chr12:18551074:A:G	rs12827361	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr12	18589483	18589484	chr12:18589484:T:C	rs147008464	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.368585286553667	-0.26662750925094714	TGAATTCCAGTGA
chr12	18696846	18696847	chr12:18696847:G:C	rs4489804	G	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr12	18704137	18704138	chr12:18704138:C:A	rs1369913964	C	A	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr12	19074835	19074836	chr12:19074836:C:T	rs76980484	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr12	19239367	19239368	chr12:19239368:G:C	rs118163426	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr12	19641186	19641187	chr12:19641187:C:T	rs7313438	C	T	c	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr12	19695152	19695153	chr12:19695153:T:G	rs11044776	T	G	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	19752945	19752946	chr12:19752946:A:G	rs79901639	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.292254692860492	-1.6078413287541549	TCAATTGCCTTGT
chr12	19856042	19856043	chr12:19856043:A:C	rs61921270	A	C	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr12	19856547	19856548	chr12:19856548:T:G	rs11044902	T	G	T	Sox1.mouse_HMG_3	1	1	-	4.801813854324676	11.70456664168402	AAAATGCCATTGA
chr12	19971250	19971251	chr12:19971251:A:G	rs77804611	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.600081147996137	-0.28682835980436994	TCAGTAACATTGT
chr12	20038726	20038727	chr12:20038727:A:G	rs2417817	A	G	A	Sox1.mouse_HMG_3	0	1	-	6.784027373833981	-0.06815176825930092	TCAATTTTATTAA
chr12	20249232	20249233	chr12:20249233:A:G	rs61911303	A	G	A	Sox1.mouse_HMG_3	11	1	-	5.316707074568354	7.63418078005615	TCAATTGCATTTT
chr12	20342192	20342193	chr12:20342193:C:T	rs369515470	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	20457904	20457905	chr12:20457905:T:C	rs7487173	T	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr12	20486409	20486410	chr12:20486410:T:G	rs145898641	T	G	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	20494903	20494904	chr12:20494904:C:G	rs7487227	C	G	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr12	20546836	20546837	chr12:20546837:G:A	rs2311	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	20833126	20833127	chr12:20833127:A:G	rs12824927	A	G	A	Sox1.mouse_HMG_3	8	1	-	6.265114103817423	6.265114103817423	TCACTAGCTTTGA
chr12	21170233	21170234	chr12:21170234:T:C	rs79546646	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	21305725	21305726	chr12:21305726:T:C	rs11838023	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.64627955357466	0.8452523916576551	ACAATGACATTAA
chr12	21339002	21339003	chr12:21339003:A:T	rs2857468	A	T	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr12	21672266	21672267	chr12:21672267:G:T	rs7133519	G	T	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	21771601	21771602	chr12:21771602:T:C	rs767351726	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr12	22827833	22827834	chr12:22827834:G:C	chr12:22827834:G:C	G	C	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr12	22879094	22879095	chr12:22879095:T:A	rs57132100	T	A	A	Sox1.mouse_HMG_3	4	1	+	4.768931213299528	0.13371841749491353	TCAGTAGCAGTGA
chr12	22894007	22894008	chr12:22894008:G:A	rs2466969	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr12	23108718	23108719	chr12:23108719:T:G	rs17361776	T	G	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	24300518	24300519	chr12:24300519:G:A	rs565934	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	24472242	24472243	chr12:24472243:C:T	rs11047466	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	24696706	24696707	chr12:24696707:C:T	rs4408389	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr12	24944671	24944672	chr12:24944672:C:T	rs2242399	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	24945368	24945369	chr12:24945369:G:A	rs17316319	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.902034055833868	1.79219362484797	ACAATCCCATTGC
chr12	25052813	25052814	chr12:25052814:A:G	chr12:25052814:A:G	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr12	25188188	25188189	chr12:25188189:A:C	rs11611468	A	C	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr12	25243100	25243101	chr12:25243101:C:T	rs2970532	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr12	25251440	25251441	chr12:25251441:T:C	rs370324187	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr12	25276805	25276806	chr12:25276806:G:C	rs10743554	G	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr12	25276833	25276834	chr12:25276834:A:C	rs10743555	A	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr12	25327487	25327488	chr12:25327488:C:T	rs7970784	C	T	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr12	25527457	25527458	chr12:25527458:G:A	rs73076320	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr12	25578613	25578614	chr12:25578614:C:A	rs71450488	C	A	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr12	25584055	25584056	chr12:25584056:G:A	rs1382856	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr12	25718919	25718920	chr12:25718920:T:C	rs6487510	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	25760031	25760032	chr12:25760032:A:G	rs1462721	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	25935490	25935491	chr12:25935491:G:C	rs16929667	G	C	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr12	25979851	25979852	chr12:25979852:G:A	rs10842648	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr12	26058738	26058739	chr12:26058739:T:G	rs7139241	T	G	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr12	26157317	26157318	chr12:26157318:C:A	rs4963965	C	A	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	26523814	26523815	chr12:26523815:T:C	rs10506001	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr12	26563904	26563905	chr12:26563905:T:A	rs55861094	T	A	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr12	26971721	26971722	chr12:26971722:A:G	rs15556	A	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	26990574	26990575	chr12:26990575:G:A	rs10771314	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	27306613	27306614	chr12:27306614:T:G	rs4963689	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	27478735	27478736	chr12:27478736:A:G	rs405522	A	G	G	Sox1.mouse_HMG_3	0	1	-	2.980031297225883	-3.8721478448674014	TCACTGCCACTGC
chr12	27478911	27478912	chr12:27478912:G:T	rs439865	G	T	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	27516915	27516916	chr12:27516916:C:T	rs421522	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	27555457	27555458	chr12:27555458:G:A	rs544987547	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr12	27782534	27782535	chr12:27782535:C:G	rs3751234	C	G	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	28512425	28512426	chr12:28512426:C:T	rs11049684	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	28934298	28934299	chr12:28934299:T:C	rs1844257	T	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr12	29255005	29255006	chr12:29255006:G:C	rs10743651	G	C	C	Sox1.mouse_HMG_3	1	1	-	8.450540868996244	1.547788081636899	TCACAATCATTGA
chr12	29415344	29415345	chr12:29415345:T:C	rs1436315	T	C	T	Sox1.mouse_HMG_3	5	1	-	8.878693611500394	7.646020840433303	TCAATACCATTTA
chr12	29543237	29543238	chr12:29543238:C:G	rs12426386	C	G	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	29641058	29641059	chr12:29641059:T:C	rs10431221	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr12	29673351	29673352	chr12:29673352:G:C	rs741614	G	C	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr12	29675824	29675825	chr12:29675825:A:T	rs10743669	A	T	A	Sox1.mouse_HMG_3	3	1	+	7.966320139144294	1.1652929772272898	TTAATAGCATTGT
chr12	29675833	29675834	chr12:29675834:T:C	rs10771568	T	C	T	Sox1.mouse_HMG_3	12	1	+	7.966320139144294	7.8805432773975905	TTAATAGCATTGT
chr12	29885109	29885110	chr12:29885110:C:T	rs12227846	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	29898279	29898280	chr12:29898280:T:C	rs75601993	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.221773738697339	-1.6651357691031685	TCAATACTCTTGA
chr12	30012536	30012537	chr12:30012537:T:C	rs1909148	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	30344195	30344196	chr12:30344196:G:C	rs10843724	G	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr12	30578637	30578638	chr12:30578638:C:T	rs79714340	C	T	C	Sox1.mouse_HMG_3	6	1	-	5.349912953710048	5.82642889336527	TCACTCGCATTGG
chr12	30840903	30840904	chr12:30840904:G:A	rs33175	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.052477077741333	0.0942048466277079	TCACTTGCATTAG
chr12	30988277	30988278	chr12:30988278:T:C	rs35081	T	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	31026649	31026650	chr12:31026650:T:C	rs2287454	T	C	t	Sox1.mouse_HMG_3	9	1	+	5.3488303300824285	-1.538079177718079	GCAATTGCATTGT
chr12	31086398	31086399	chr12:31086399:T:C	rs4012619	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	31175813	31175814	chr12:31175814:C:G	rs34016579	C	G	.	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr12	31475138	31475139	chr12:31475139:T:C	rs1038066	T	C	T	Sox1.mouse_HMG_3	12	1	-	4.669862353601886	1.3818938772786837	TCAACAGCAGTGA
chr12	31737667	31737668	chr12:31737668:G:A	rs11051552	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr12	32047902	32047903	chr12:32047903:G:C	rs1684126	G	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr12	32070620	32070621	chr12:32070621:C:T	rs16919225	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	32089687	32089688	chr12:32089688:T:G	rs78634642	T	G	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr12	32132590	32132591	chr12:32132591:T:C	rs17585555	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	32245382	32245383	chr12:32245383:A:G	rs326639	A	G	A	Sox1.mouse_HMG_3	4	1	-	7.159784799702404	0.2596887780877568	TCACTTGAATTGA
chr12	32276184	32276185	chr12:32276185:C:T	rs1151037	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr12	32290856	32290857	chr12:32290857:C:G	rs190511	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr12	32660905	32660906	chr12:32660906:T:C	rs115400730	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	32777602	32777603	chr12:32777603:G:A	rs7959288	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr12	32801350	32801351	chr12:32801351:C:T	rs56798911	C	T	T	Sox1.mouse_HMG_3	7	1	+	9.540402112487596	5.907934621392405	ACACTGCCATTGA
chr12	32821310	32821311	chr12:32821311:C:T	rs10772008	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.900880124583594	0.9426078934699671	ACAATATCATTAT
chr12	32917279	32917280	chr12:32917280:T:C	rs10743807	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	33640934	33640935	chr12:33640935:G:A	rs75180006	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	33640986	33640987	chr12:33640987:T:C	rs12820852	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr12	33751969	33751970	chr12:33751970:C:A	rs77166069	C	A	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr12	33832907	33832908	chr12:33832908:T:C	rs1872746	T	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	34022365	34022366	chr12:34022366:C:T	rs12372721	C	T	C	Sox1.mouse_HMG_3	11	1	-	8.302828055411824	4.1929876244259265	TCAATCGCATTGC
chr12	34126131	34126132	chr12:34126132:A:G	rs73094282	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.3712420522983635	-2.5375127270168565	TCAACTCCAGTGA
chr12	34940191	34940192	chr12:34940192:T:C	rs1455849892	T	C	.	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr12	35511057	35511058	chr12:35511058:T:G	rs1348781686	T	G	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr12	35511065	35511066	chr12:35511066:A:T	rs1487654753	A	T	.	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr12	36386708	36386709	chr12:36386709:T:G	rs1332315392	T	G	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	36507666	36507667	chr12:36507667:A:G	rs1355943262	A	G	.	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	36704859	36704860	chr12:36704860:G:C	rs1278073878	G	C	.	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr12	36856289	36856290	chr12:36856290:C:G	rs1333737607	C	G	.	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr12	36965280	36965281	chr12:36965281:T:A	rs1165556789	T	A	.	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	38261602	38261603	chr12:38261603:T:G	rs10880785	T	G	T	Sox1.mouse_HMG_3	5	1	-	6.542787966475592	2.006800513376199	TCACTACCAGTGG
chr12	38556458	38556459	chr12:38556459:G:C	rs11168552	G	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr12	39451550	39451551	chr12:39451551:T:G	rs11172174	T	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr12	39914170	39914171	chr12:39914171:G:A	rs10877772	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	40287602	40287603	chr12:40287603:C:A	chr12:40287603:C:A	C	A	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr12	40650356	40650357	chr12:40650357:C:T	rs66524047	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr12	40671393	40671394	chr12:40671394:T:C	rs1348513	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.848691847342998	-2.0600629319722232	TAAATTCCATTGG
chr12	40972352	40972353	chr12:40972353:A:G	rs10879443	A	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr12	40993852	40993853	chr12:40993853:C:T	rs1388670	C	T	-	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	41247947	41247948	chr12:41247948:A:G	rs80236956	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	42097576	42097577	chr12:42097577:T:A	rs139072942	T	A	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr12	42125885	42125886	chr12:42125886:C:G	rs1628871	C	G	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	42266626	42266627	chr12:42266627:T:C	rs114771179	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	42985554	42985555	chr12:42985555:T:C	rs117228757	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr12	42999581	42999582	chr12:42999582:A:T	rs75673656	A	T	A	Sox1.mouse_HMG_3	12	1	+	7.153481122085603	4.740040080014456	ACAAATGCATTGA
chr12	43011232	43011233	chr12:43011233:G:A	rs875886	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr12	43108217	43108218	chr12:43108218:G:A	rs1167100	G	A	G	Sox1.mouse_HMG_3	9	1	+	5.014651237804509	1.8958167671165351	TCAATACCAGTCT
chr12	43206265	43206266	chr12:43206266:A:C	rs10785421	A	C	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	43208807	43208808	chr12:43208808:A:C	chr12:43208808:A:C	A	C	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	43408189	43408190	chr12:43408190:A:C	rs78723692	A	C	A	Sox1.mouse_HMG_3	0	1	-	4.521304537340773	-2.3308746047525117	TCAAAAGCAGTGT
chr12	43586254	43586255	chr12:43586255:C:T	rs957216	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr12	44054045	44054046	chr12:44054046:A:C	rs11182405	A	C	C	Sox1.mouse_HMG_3	4	1	-	4.7918239202432105	-2.1082721013714365	ACAATTTCTTTGA
chr12	44218332	44218333	chr12:44218333:C:A	rs61228557	C	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	44755517	44755518	chr12:44755518:C:A	rs11182640	C	A	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr12	45217818	45217819	chr12:45217819:A:G	rs3759080	A	G	G	Sox1.mouse_HMG_3	0	1	-	8.480426762748733	1.628247620655451	TCAATTTTATTGT
chr12	45667005	45667006	chr12:45667006:A:C	rs139453842	A	C	A	Sox1.mouse_HMG_3	3	1	-	3.912903578980884	3.912903578980884	TCATTCTCATTGA
chr12	46134262	46134263	chr12:46134263:A:T	rs1550738	A	T	A	Sox1.mouse_HMG_3	2	1	+	7.210163307732429	0.30140852841720833	TTAATGACATTGT
chr12	46352230	46352231	chr12:46352231:A:C	rs79502328	A	C	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr12	46359575	46359576	chr12:46359576:C:T	rs79548763	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr12	46391092	46391093	chr12:46391093:C:G	rs74083758	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	46492815	46492816	chr12:46492816:C:T	rs188281539	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr12	46675904	46675905	chr12:46675905:T:C	rs73282110	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr12	46875477	46875478	chr12:46875478:T:C	rs74082953	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr12	47366050	47366051	chr12:47366051:G:T	rs73299471	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	47366080	47366081	chr12:47366081:T:A	rs12818155	T	A	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	47424825	47424826	chr12:47424826:C:A	rs7296045	C	A	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr12	47570399	47570400	chr12:47570400:C:G	rs12822159	C	G	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr12	47570401	47570402	chr12:47570402:G:A	rs55948459	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	47575763	47575764	chr12:47575764:C:T	rs7139378	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr12	47778084	47778085	chr12:47778085:C:T	rs1250262769	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr12	47778095	47778096	chr12:47778096:G:A	rs111633135	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	47778097	47778098	chr12:47778098:A:G	rs781654065	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr12	47838114	47838115	chr12:47838115:C:T	rs10783215	C	T	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	47943845	47943846	chr12:47943846:C:T	rs3923693	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr12	49208421	49208422	chr12:49208422:A:G	rs10875934	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr12	49235197	49235198	chr12:49235198:A:G	rs188583388	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr12	49822025	49822026	chr12:49822026:G:A	rs77695587	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr12	50143276	50143277	chr12:50143277:C:G	rs2277355	C	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr12	50632126	50632127	chr12:50632127:T:A	rs10876073	T	A	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr12	50671833	50671834	chr12:50671834:T:C	rs2684908	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr12	51032053	51032054	chr12:51032054:G:A	rs7488909	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr12	51199832	51199833	chr12:51199833:T:G	rs4077093	T	G	G	Sox1.mouse_HMG_3	2	1	-	3.014761662933106	-3.893993116382114	CCACTGCCATTGC
chr12	51433334	51433335	chr12:51433335:C:T	rs4761965	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.680815994967743	-0.277456236145883	TCATTATCAGTGA
chr12	51730933	51730934	chr12:51730934:C:A	rs393897	C	A	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr12	51806957	51806958	chr12:51806958:C:A	rs60637	C	A	C	Sox1.mouse_HMG_3	1	1	+	8.910816867014468	2.0080640796551226	CCAATACCATTGA
chr12	51824187	51824188	chr12:51824188:A:C	chr12:51824188:A:C	A	C	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr12	52058304	52058305	chr12:52058305:C:T	rs17126257	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr12	52074491	52074492	chr12:52074492:C:A	rs4762048	C	A	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr12	52189819	52189820	chr12:52189820:G:T	rs11170034	G	T	G	Sox1.mouse_HMG_3	11	1	+	4.706046715829483	-2.1782556817778764	TCAAGGGCATTGC
chr12	52189836	52189837	chr12:52189837:C:T	rs73311405	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr12	52229244	52229245	chr12:52229245:T:C	rs7299945	T	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	52258036	52258037	chr12:52258037:G:T	rs1902765	G	T	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	52322737	52322738	chr12:52322738:G:A	rs17656443	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr12	52338556	52338557	chr12:52338557:C:G	rs12099831	C	G	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr12	53321594	53321595	chr12:53321595:G:A	rs149864679	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	53327666	53327667	chr12:53327667:A:C	rs112778209	A	C	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr12	53441250	53441251	chr12:53441251:G:T	rs11170558	G	T	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr12	53728288	53728289	chr12:53728289:G:A	rs17102221	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	53990419	53990420	chr12:53990420:A:G	rs7302243	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr12	54013505	54013506	chr12:54013506:C:T	rs11170785	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr12	54013512	54013513	chr12:54013513:A:G	rs4759317	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	54142674	54142675	chr12:54142675:T:C	rs7970400	T	C	C	Sox1.mouse_HMG_3	4	1	+	6.404377451884095	-0.4957185697305515	TCACTTGTATTGT
chr12	54749425	54749426	chr12:54749426:T:C	rs114816736	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	54917038	54917039	chr12:54917039:C:A	rs78872239	C	A	C	Sox1.mouse_HMG_3	12	1	-	5.310115195408503	6.18464262966056	TCACTGCCAGTGG
chr12	54933578	54933579	chr12:54933579:G:C	rs559546193	G	C	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	54967633	54967634	chr12:54967634:G:A	rs35798949	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.3154810935557695	0.6786184608351875	TCACTAACAGTCA
chr12	55038205	55038206	chr12:55038206:C:T	rs2633414	C	T	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr12	55245468	55245469	chr12:55245469:A:G	rs56793916	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	55373283	55373284	chr12:55373284:T:C	rs10876753	T	C	-	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	55638052	55638053	chr12:55638053:A:G	rs7309433	A	G	G	Sox1.mouse_HMG_3	6	1	-	5.38190103252794	5.894978847638411	TCACTTTCATTCT
chr12	55658756	55658757	chr12:55658757:G:C	rs4759184	G	C	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr12	55712147	55712148	chr12:55712148:A:C	rs78694778	A	C	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	55906353	55906354	chr12:55906354:T:C	rs77858935	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	56628886	56628887	chr12:56628887:G:A	rs548977400	G	A	g	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	57104186	57104187	chr12:57104187:G:A	rs56214329	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	57234940	57234941	chr12:57234941:G:A	chr12:57234941:G:A	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	58162950	58162951	chr12:58162951:T:C	rs11172479	T	C	T	Sox1.mouse_HMG_3	1	1	+	8.357059217052814	13.315331448166441	TTAATAACATTGC
chr12	58451247	58451248	chr12:58451248:A:G	rs67614372	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr12	58481979	58481980	chr12:58481980:T:C	rs6581192	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr12	58529441	58529442	chr12:58529442:T:C	chr12:58529442:T:C	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr12	58529462	58529463	chr12:58529463:A:G	rs146051200	A	G	A	Sox1.mouse_HMG_3	9	1	-	9.013522190067285	2.126612682266776	TCATTAACATTGA
chr12	58529470	58529471	chr12:58529471:G:C	rs112759887	G	C	G	Sox1.mouse_HMG_3	1	1	-	9.013522190067285	2.110769402707941	TCATTAACATTGA
chr12	58529481	58529482	chr12:58529482:A:G	rs3913103	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr12	58557291	58557292	chr12:58557292:G:A	rs80347972	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	58602971	58602972	chr12:58602972:A:T	rs7299125	A	T	T	Sox1.mouse_HMG_3	9	1	-	5.1223505549075945	-1.7645589528929129	TCAATGCCCTTGC
chr12	58862074	58862075	chr12:58862075:A:G	rs11533605	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr12	59337095	59337096	chr12:59337096:A:G	rs11836800	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	59561027	59561028	chr12:59561028:A:G	rs2646308	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr12	59615974	59615975	chr12:59615975:C:T	rs574189863	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	59828838	59828839	chr12:59828839:A:G	rs11173174	A	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr12	59828861	59828862	chr12:59828862:A:G	rs11173175	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.823286167002276	-0.08546861231294467	TCAAATATATTGA
chr12	60335940	60335941	chr12:60335941:A:G	rs186208089	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	60489045	60489046	chr12:60489046:T:C	rs4622306	T	C	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr12	60799101	60799102	chr12:60799102:G:A	rs12316933	G	A	G	Sox1.mouse_HMG_3	6	1	-	4.903539479767016	4.390461664656545	ACATTGCCATTGA
chr12	61308323	61308324	chr12:61308324:C:T	rs2731401	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr12	61552070	61552071	chr12:61552071:C:T	rs7979611	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr12	61872405	61872406	chr12:61872406:T:A	rs10492352	T	A	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr12	62035691	62035692	chr12:62035692:C:T	rs348684	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr12	62035701	62035702	chr12:62035702:T:C	rs76074364	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.45112390452856	1.5423691252133385	TCAATAGCACTGA
chr12	62292642	62292643	chr12:62292643:C:T	rs561389242	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr12	63076044	63076045	chr12:63076045:C:A	rs1495016	C	A	A	Sox1.mouse_HMG_3	11	1	-	5.966493802513899	-0.9178085950934602	TCACTTCCCTTGA
chr12	63107545	63107546	chr12:63107546:T:C	rs983452	T	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr12	63389856	63389857	chr12:63389857:G:A	rs488736	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr12	63499998	63499999	chr12:63499999:C:T	rs1879386	C	T	c	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr12	63882888	63882889	chr12:63882889:C:T	rs80180884	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	63925063	63925064	chr12:63925064:A:G	rs73113995	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr12	64032336	64032337	chr12:64032337:C:T	rs74447608	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	64180492	64180493	chr12:64180493:G:A	rs789713	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr12	64404051	64404052	chr12:64404052:G:C	rs12306555	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr12	64670293	64670294	chr12:64670294:G:A	rs529925476	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.298256684816369	5.774772624471591	TGAATTGCATTGT
chr12	64895688	64895689	chr12:64895689:T:G	rs2590719	T	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr12	65526315	65526316	chr12:65526316:C:G	rs1271381176	C	G	C	Sox1.mouse_HMG_3	9	1	-	4.521304537340773	1.4024700666527994	TCAAAAGCAGTGT
chr12	65546900	65546901	chr12:65546901:T:C	rs4077464	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.852128416204848	-2.0566263631103725	TCAGTACCATTAA
chr12	65576638	65576639	chr12:65576639:G:C	rs4762101	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr12	65726873	65726874	chr12:65726874:T:C	rs10431570	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr12	65872786	65872787	chr12:65872787:A:G	rs7967707	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr12	66108884	66108885	chr12:66108885:A:T	rs7302893	A	T	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr12	66499151	66499152	chr12:66499152:T:A	rs987562	T	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr12	66644359	66644360	chr12:66644360:T:C	rs10878484	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	66901875	66901876	chr12:66901876:A:C	rs1504315	A	C	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr12	66901891	66901892	chr12:66901892:C:T	rs1504314	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	67141709	67141710	chr12:67141710:C:A	rs55676601	C	A	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr12	67303536	67303537	chr12:67303537:C:T	rs710630	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	67327830	67327831	chr12:67327831:A:G	rs1082702	A	G	G	Sox1.mouse_HMG_3	6	1	+	6.104490358020287	5.627974418365065	ACAATAACATTTA
chr12	67431198	67431199	chr12:67431199:A:G	rs73140717	A	G	A	Sox1.mouse_HMG_3	6	1	-	5.475261258918142	5.988339074028612	TCACTTTCAATGA
chr12	67446805	67446806	chr12:67446806:G:A	rs10878619	G	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr12	67446837	67446838	chr12:67446838:C:A	rs10878620	C	A	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr12	67515889	67515890	chr12:67515890:T:C	rs17103930	T	C	T	Sox1.mouse_HMG_3	6	1	-	6.236195972537098	5.7596800328818745	TCACTGACAGTGT
chr12	67590358	67590359	chr12:67590359:A:G	rs533601052	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr12	67780833	67780834	chr12:67780834:A:G	rs142037021	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	68097647	68097648	chr12:68097648:A:G	rs140860929	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr12	68140210	68140211	chr12:68140211:G:A	rs10878761	G	A	G	Sox1.mouse_HMG_3	3	1	-	4.336847759102071	-0.30001487361850976	TCACTAACATAGT
chr12	68259486	68259487	chr12:68259487:A:G	rs1044885942	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr12	68350756	68350757	chr12:68350757:C:T	rs17105331	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	68351670	68351671	chr12:68351671:T:C	rs12828683	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr12	68376241	68376242	chr12:68376242:C:T	rs6581817	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	68376259	68376260	chr12:68376260:T:C	rs6581818	T	C	C	Sox1.mouse_HMG_3	0	1	+	2.95818602571117	-3.893993116382114	TCACTGCCTTTGC
chr12	68405326	68405327	chr12:68405327:C:G	rs10492307	C	G	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr12	68547449	68547450	chr12:68547450:C:G	rs7972199	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	68582146	68582147	chr12:68582147:T:C	rs146013034	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr12	68613797	68613798	chr12:68613798:T:C	rs12304345	T	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr12	68809531	68809532	chr12:68809532:G:A	rs3730495	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	68809743	68809744	chr12:68809744:T:A	rs1196335	T	A	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr12	68809773	68809774	chr12:68809774:T:G	rs3730498	T	G	T	Sox1.mouse_HMG_3	0	1	-	6.088696734013	2.0622741882763576	ACAATAACATAGA
chr12	68895968	68895969	chr12:68895969:A:C	rs11177408	A	C	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr12	68899462	68899463	chr12:68899463:T:C	rs1380830638	T	C	T	Sox1.mouse_HMG_3	6	1	+	6.982237907097476	7.4953157222079465	TCAAAATTATTGA
chr12	68915162	68915163	chr12:68915163:C:T	rs568522042	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr12	68953572	68953573	chr12:68953573:A:G	rs7969929	A	G	A	Sox1.mouse_HMG_3	5	1	+	6.515954123165402	5.283281352098314	TCACAAACATTGC
chr12	69068687	69068688	chr12:69068688:T:G	chr12:69068688:T:G	T	G	t	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	69091671	69091672	chr12:69091672:A:G	rs12322915	A	G	A	Sox1.mouse_HMG_3	3	1	+	12.591748550084231	5.790721388167228	TCAATTACATTGC
chr12	69103039	69103040	chr12:69103040:G:C	rs10878911	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr12	69103040	69103041	chr12:69103041:A:T	rs10878912	A	T	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr12	69112685	69112686	chr12:69112686:T:C	rs12309456	T	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr12	69130244	69130245	chr12:69130245:C:G	rs10784763	C	G	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr12	69153810	69153811	chr12:69153811:A:G	rs74101077	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr12	69161776	69161777	chr12:69161777:T:G	rs10431582	T	G	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	69323385	69323386	chr12:69323386:T:G	rs10878963	T	G	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr12	69341557	69341558	chr12:69341558:A:G	rs61929087	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr12	69434900	69434901	chr12:69434901:G:A	rs11177669	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	69535213	69535214	chr12:69535214:G:A	rs3910823	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	69948399	69948400	chr12:69948400:G:C	rs11177989	G	C	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr12	70181000	70181001	chr12:70181001:T:C	rs1406013	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.90579457266907	2.018885064868562	TCCATAACATTGA
chr12	70196142	70196143	chr12:70196143:T:G	rs78531430	T	G	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr12	70364883	70364884	chr12:70364884:G:A	rs12310417	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	70815760	70815761	chr12:70815761:T:C	rs2458438	T	C	C	Sox1.mouse_HMG_3	0	1	+	9.0835561306683	2.231376988575017	TCACTAACATTCA
chr12	70815770	70815771	chr12:70815771:T:G	rs2470375	T	G	T	Sox1.mouse_HMG_3	10	1	+	9.0835561306683	2.183460109053654	TCACTAACATTCA
chr12	70849627	70849628	chr12:70849628:T:A	rs150770764	T	A	T	Sox1.mouse_HMG_3	5	1	+	5.412629352751896	6.136212250834104	ACATTTCCATTGA
chr12	70948489	70948490	chr12:70948490:G:A	rs11178499	G	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	70948515	70948516	chr12:70948516:G:A	rs34475547	G	A	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	71282489	71282490	chr12:71282490:A:T	rs76543553	A	T	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	71355056	71355057	chr12:71355057:G:A	rs5006248	G	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	71369738	71369739	chr12:71369739:T:G	rs34125145	T	G	t	Sox1.mouse_HMG_3	3	1	-	5.2259847460434194	3.061820216846995	TCAATTTCACTGT
chr12	71558834	71558835	chr12:71558835:C:T	rs1032611284	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	71754567	71754568	chr12:71754568:C:G	rs10879331	C	G	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr12	71754570	71754571	chr12:71754571:A:G	rs147965811	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr12	71956245	71956246	chr12:71956246:T:A	rs7955501	T	A	T	Sox1.mouse_HMG_3	2	1	-	3.489121170210763	-3.4196336091044564	TCACTTCCAATGC
chr12	72032568	72032569	chr12:72032569:G:C	rs41317114	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr12	72612126	72612127	chr12:72612127:A:G	rs3852549	A	G	G	Sox1.mouse_HMG_3	4	1	+	4.219028433987917	1.9541452081778836	TCAAAACCTTTGA
chr12	72901833	72901834	chr12:72901834:C:T	rs17799817	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr12	72938017	72938018	chr12:72938018:C:G	rs4505127	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr12	73025331	73025332	chr12:73025332:G:A	rs995163	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	73160217	73160218	chr12:73160218:T:A	rs12813018	T	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr12	73815305	73815306	chr12:73815306:C:T	rs76443784	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	74424870	74424871	chr12:74424871:T:A	rs75881685	T	A	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr12	74580335	74580336	chr12:74580336:A:G	rs7301245	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	74752415	74752416	chr12:74752416:G:A	rs10879833	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr12	74897681	74897682	chr12:74897682:A:C	chr12:74897682:A:C	A	C	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	75315637	75315638	chr12:75315638:T:C	rs774243502	T	C	T	Sox1.mouse_HMG_3	11	1	-	4.32809695972852	8.437937390714419	TCAATAGCATAAA
chr12	75455694	75455695	chr12:75455695:T:C	rs7961005	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr12	75457997	75457998	chr12:75457998:T:A	rs7307352	T	A	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr12	75571290	75571291	chr12:75571291:T:C	rs58248634	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr12	75847897	75847898	chr12:75847898:G:A	rs10879991	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	75847900	75847901	chr12:75847901:C:T	rs10879992	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr12	75962047	75962048	chr12:75962048:C:T	rs73131443	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	76450182	76450183	chr12:76450183:A:C	rs11832174	A	C	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	76719327	76719328	chr12:76719328:A:G	rs759171246	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr12	76804823	76804824	chr12:76804824:G:A	rs7956259	G	A	A	Sox1.mouse_HMG_3	1	1	-	4.589688641025823	-0.3685835900878023	TCAATAGCAGTCT
chr12	77171903	77171904	chr12:77171904:T:A	rs7955423	T	A	T	Sox1.mouse_HMG_3	2	1	-	7.05655318931869	0.1477984100034695	ACACTAACAGTGA
chr12	77171919	77171920	chr12:77171920:A:G	rs771621	A	G	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	77377714	77377715	chr12:77377715:G:A	rs4017759	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr12	77377727	77377728	chr12:77377728:T:C	rs79841552	T	C	T	Sox1.mouse_HMG_3	10	1	+	8.500725441567013	3.8655126457624003	ACAATTGCATTGG
chr12	77421399	77421400	chr12:77421400:C:A	rs17182253	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr12	77421889	77421890	chr12:77421890:T:C	rs7296457	T	C	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr12	77585069	77585070	chr12:77585070:A:G	rs696447	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.208127416654298	-1.7006273626609232	TCTATGCCATTGT
chr12	77675930	77675931	chr12:77675931:G:A	rs711137	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	77735030	77735031	chr12:77735031:G:A	rs711152	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	77814958	77814959	chr12:77814959:C:A	rs7302948	C	A	C	Sox1.mouse_HMG_3	3	1	+	9.638833448382455	11.802997977578878	TCACTTACATTGG
chr12	77849102	77849103	chr12:77849103:C:G	rs115151211	C	G	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr12	77946837	77946838	chr12:77946838:T:A	rs2619072	T	A	A	Sox1.mouse_HMG_3	4	1	+	7.6975741833098414	3.0623613875052285	TCAATGACATTTA
chr12	78193881	78193882	chr12:78193882:A:G	rs300504	A	G	a	Sox1.mouse_HMG_3	3	1	+	5.717217289639178	-1.083809872277828	TCAATTCCTTTGT
chr12	78292901	78292902	chr12:78292902:T:C	rs79811037	T	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	79252524	79252525	chr12:79252525:A:G	rs1245825	A	G	G	Sox1.mouse_HMG_3	9	1	-	8.308419889709556	1.4215103819090484	TCACTTCCATTCA
chr12	79323187	79323188	chr12:79323188:C:T	rs116692510	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	79369613	79369614	chr12:79369614:G:A	rs6539445	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr12	79408271	79408272	chr12:79408272:G:A	rs577408507	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr12	79409888	79409889	chr12:79409889:G:T	rs1526961	G	T	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr12	79738929	79738930	chr12:79738930:C:T	rs2808355	C	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	79886133	79886134	chr12:79886134:T:C	rs182441395	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	79977982	79977983	chr12:79977983:T:C	rs112442181	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	79977987	79977988	chr12:79977988:C:T	rs78626556	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	80236044	80236045	chr12:80236045:A:G	rs1451104	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.37436741994599	0.4874579121454832	TCACTGGCATTCA
chr12	80540818	80540819	chr12:80540819:C:T	rs11114499	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr12	80830393	80830394	chr12:80830394:A:G	rs12314666	A	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	81150756	81150757	chr12:81150757:C:T	rs10492002	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	81570255	81570256	chr12:81570256:A:G	rs74106657	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.380907459938081	-1.5278473193771407	ACAATTACATTTA
chr12	81633428	81633429	chr12:81633429:C:A	rs17008848	C	A	C	Sox1.mouse_HMG_3	11	1	-	6.415235426551794	-0.46906697105556594	TCAAGAACATTGC
chr12	81702167	81702168	chr12:81702168:T:A	rs141137649	T	A	T	Sox1.mouse_HMG_3	0	1	+	5.281526031045548	2.455769434688905	TCAATGACACTGT
chr12	81731100	81731101	chr12:81731101:C:T	rs1922549	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr12	82766410	82766411	chr12:82766411:G:T	rs11115386	G	T	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	83004013	83004014	chr12:83004014:C:T	rs1796205	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	83127682	83127683	chr12:83127683:T:A	rs59148775	T	A	T	Sox1.mouse_HMG_3	8	1	-	5.375507759764879	-1.5332470195503418	ACAAAATCATTGT
chr12	83186426	83186427	chr12:83186427:G:C	rs113858951	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr12	83828061	83828062	chr12:83828062:C:T	rs183015540	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr12	84330660	84330661	chr12:84330661:C:T	rs73160431	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr12	84357899	84357900	chr12:84357900:T:G	rs9669258	T	G	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	84502997	84502998	chr12:84502998:C:T	rs12812617	C	T	C	Sox1.mouse_HMG_3	1	1	+	6.0158375909427	1.057565359829074	TCAATAGCCTTGT
chr12	84506456	84506457	chr12:84506457:A:C	rs74110616	A	C	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	84597318	84597319	chr12:84597319:G:T	rs1380411	G	T	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr12	84642398	84642399	chr12:84642399:C:T	rs1459618	C	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr12	85429820	85429821	chr12:85429821:T:G	rs7135361	T	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	86081142	86081143	chr12:86081143:T:C	rs1502799	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	86082219	86082220	chr12:86082220:A:C	rs11117184	A	C	a	Sox1.mouse_HMG_3	1	1	-	6.647870506330504	4.7033899500847856	TTAATGGCATTGC
chr12	86097362	86097363	chr12:86097363:A:C	rs75526457	A	C	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	86230377	86230378	chr12:86230378:C:G	rs12305255	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	86230388	86230389	chr12:86230389:A:G	rs61949039	A	G	A	Sox1.mouse_HMG_3	10	1	-	9.294334433610464	4.65912163780585	TCACTTATATTGA
chr12	86945963	86945964	chr12:86945964:G:A	rs73192720	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.140207884296718	0.18193565318309113	TCAATTTCAATGC
chr12	86989342	86989343	chr12:86989343:G:A	rs148214461	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	87085097	87085098	chr12:87085098:G:A	rs77186575	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr12	87266483	87266484	chr12:87266484:C:T	chr12:87266484:C:T	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr12	87333816	87333817	chr12:87333817:C:T	rs3990897	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr12	87801895	87801896	chr12:87801896:T:C	rs1461285	T	C	.	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	88392036	88392037	chr12:88392037:A:G	rs529091080	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	88453223	88453224	chr12:88453224:A:G	rs7486184	A	G	G	Sox1.mouse_HMG_3	8	1	+	4.905189316682984	-2.003565462632237	ACACAGCCATTGA
chr12	88625105	88625106	chr12:88625106:C:G	rs1703078	C	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	88625153	88625154	chr12:88625154:A:G	rs147838291	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr12	88947585	88947586	chr12:88947586:G:T	rs996286	G	T	G	Sox1.mouse_HMG_3	7	1	-	8.90579457266907	3.615293387321039	TCAATAACCTTGA
chr12	89076176	89076177	chr12:89076177:T:C	rs11105165	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	89134167	89134168	chr12:89134168:C:T	rs71454146	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr12	89212283	89212284	chr12:89212284:G:T	rs17457109	G	T	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr12	89234531	89234532	chr12:89234532:C:T	rs11105214	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	89751173	89751174	chr12:89751174:A:G	rs11105400	A	G	A	Sox1.mouse_HMG_3	8	1	+	15.338033412329064	8.429278633013846	TCAATAGCATTGA
chr12	89762796	89762797	chr12:89762797:A:T	rs7961386	A	T	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	89775630	89775631	chr12:89775631:T:C	rs10858928	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr12	89775647	89775648	chr12:89775648:G:T	rs142416476	G	T	G	Sox1.mouse_HMG_3	1	1	-	8.39464990100203	1.4918971136426884	TCAATTTTATTGC
chr12	89794078	89794079	chr12:89794079:G:A	rs4842502	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr12	89950917	89950918	chr12:89950918:A:G	rs7294671	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.548527805119599	-0.33838170268090795	TCATTACCATTGT
chr12	90243219	90243220	chr12:90243220:G:A	rs11615556	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr12	90243221	90243222	chr12:90243222:C:T	rs10506982	C	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	90249821	90249822	chr12:90249822:A:T	rs2731275	A	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr12	90841623	90841624	chr12:90841624:T:A	rs7311628	T	A	T	Sox1.mouse_HMG_3	0	1	+	5.212798232229279	2.3870416358726376	TCAATTTCATGGT
chr12	91039950	91039951	chr12:91039951:A:T	rs12829632	A	T	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr12	91180112	91180113	chr12:91180113:A:G	rs12317815	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	91561572	91561573	chr12:91561573:T:G	chr12:91561573:T:G	T	G	t	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	91921038	91921039	chr12:91921039:T:C	rs12318079	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr12	92208034	92208035	chr12:92208035:G:A	rs7312577	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr12	92208041	92208042	chr12:92208042:A:C	rs12582672	A	C	A	Sox1.mouse_HMG_3	0	1	+	5.362457070186094	1.3360345244494527	AAAATTACATTGA
chr12	92629561	92629562	chr12:92629562:C:T	rs76569896	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr12	92655912	92655913	chr12:92655913:T:C	rs10859354	T	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr12	92675979	92675980	chr12:92675980:G:T	rs17020581	G	T	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr12	92820960	92820961	chr12:92820961:T:C	rs11106710	T	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr12	93016066	93016067	chr12:93016067:G:A	rs10859402	G	A	G	Sox1.mouse_HMG_3	11	1	-	4.511361540401474	2.1938878349136783	TCACTGCCATTCG
chr12	93023897	93023898	chr12:93023898:T:C	rs141969981	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	93107001	93107002	chr12:93107002:C:T	rs12818481	C	T	T	Sox1.mouse_HMG_3	7	1	+	4.700076471124824	1.0676089800296311	ACAATGACAGTGG
chr12	93229513	93229514	chr12:93229514:G:A	rs10735313	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr12	93244038	93244039	chr12:93244039:T:C	rs143448081	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr12	93426356	93426357	chr12:93426357:C:A	rs2291266	C	A	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr12	93593129	93593130	chr12:93593130:G:A	rs3887022	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr12	93700204	93700205	chr12:93700205:C:T	rs1003537579	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr12	93786925	93786926	chr12:93786926:A:G	rs12302839	A	G	a	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr12	93808705	93808706	chr12:93808706:A:G	rs114686489	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr12	93892222	93892223	chr12:93892223:C:T	rs12299919	C	T	c	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr12	93946956	93946957	chr12:93946957:G:A	rs11107292	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	94039904	94039905	chr12:94039905:A:G	rs1111426	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	94079659	94079660	chr12:94079660:A:G	rs1579569	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr12	94208128	94208129	chr12:94208129:T:C	rs7298875	T	C	C	Sox1.mouse_HMG_3	4	1	-	5.83682335412669	3.5719401283166556	TCAAAGACATTAA
chr12	94262624	94262625	chr12:94262625:A:G	rs112364413	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.306127253282913	-1.6026275260323073	TCACTTTCAGTGG
chr12	94576970	94576971	chr12:94576971:A:G	rs1296522	A	G	g	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr12	94705877	94705878	chr12:94705878:A:G	rs12821212	A	G	A	Sox1.mouse_HMG_3	7	1	+	5.18208323355795	3.5928480284413697	TCAATTCAATTCA
chr12	95164396	95164397	chr12:95164397:G:T	rs6419372	G	T	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr12	95389888	95389889	chr12:95389889:A:T	rs73378220	A	T	T	Sox1.mouse_HMG_3	9	1	-	7.116231838897727	0.229322331097221	TCAAATCCATTGG
chr12	95545714	95545715	chr12:95545715:T:A	rs6538642	T	A	T	Sox1.mouse_HMG_3	4	1	-	7.546869065084483	12.182081860889095	TCAAAAATATTGA
chr12	95643488	95643489	chr12:95643489:G:A	rs12820402	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr12	96046834	96046835	chr12:96046835:A:C	rs2660848	A	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	96054321	96054322	chr12:96054322:A:G	rs2540473	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr12	96121542	96121543	chr12:96121543:A:G	rs138538666	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.753112431914902	-1.1556423474003186	TCACTTTCATTAC
chr12	96571197	96571198	chr12:96571198:A:G	rs116587598	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	96766431	96766432	chr12:96766432:G:C	rs187864968	G	C	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr12	96766432	96766433	chr12:96766433:G:T	rs34477	G	T	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr12	96879517	96879518	chr12:96879518:T:A	rs924317770	T	A	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	97063759	97063760	chr12:97063760:A:T	rs57280713	A	T	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr12	97168825	97168826	chr12:97168826:G:C	rs76699399	G	C	G	Sox1.mouse_HMG_3	3	1	-	5.453415987403428	0.8165533546828476	TCACTTTCCTTGA
chr12	97168840	97168841	chr12:97168841:A:G	rs1019313	A	G	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	97182737	97182738	chr12:97182738:A:G	rs759476	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr12	97556595	97556596	chr12:97556596:A:G	rs913736708	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.357763678138356	1.5567365162213513	TCAATAGCATTCT
chr12	97883314	97883315	chr12:97883315:C:T	rs1349305	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr12	98110033	98110034	chr12:98110034:T:A	rs7306600	T	A	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	98110060	98110061	chr12:98110061:T:C	rs74487163	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	98194786	98194787	chr12:98194787:A:G	rs17456212	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	98280229	98280230	chr12:98280230:A:G	rs7131986	A	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr12	98280234	98280235	chr12:98280235:A:C	rs7132074	A	C	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	98406278	98406279	chr12:98406279:G:A	rs11835579	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	98769243	98769244	chr12:98769244:C:G	rs10492279	C	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	98856869	98856870	chr12:98856870:G:A	rs61933622	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr12	99042803	99042804	chr12:99042804:T:G	rs1319893	T	G	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr12	99121901	99121902	chr12:99121902:T:C	rs148210656	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	99532232	99532233	chr12:99532233:T:G	rs12321286	T	G	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr12	99553816	99553817	chr12:99553817:G:C	rs7976908	G	C	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	99752978	99752979	chr12:99752979:T:C	rs10860508	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr12	99960788	99960789	chr12:99960789:C:T	rs10507114	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr12	100337949	100337950	chr12:100337950:T:C	rs76316877	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr12	100829881	100829882	chr12:100829882:T:C	rs11110540	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	100829987	100829988	chr12:100829988:A:G	rs12367286	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr12	101041266	101041267	chr12:101041267:C:T	rs10507128	C	T	C	Sox1.mouse_HMG_3	12	1	-	4.333599982402241	7.621568458725443	TCAATGCCCTTGG
chr12	101044558	101044559	chr12:101044559:C:T	rs75576383	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr12	101116592	101116593	chr12:101116593:T:G	rs349661	T	G	G	Sox1.mouse_HMG_3	10	1	+	8.020618880777684	1.1205228591630363	ACAATTGCAGTGA
chr12	101299187	101299188	chr12:101299188:A:G	rs6538980	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr12	101300113	101300114	chr12:101300114:G:A	rs36020087	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.356455078230219	1.7239875871350268	ACAATTACTTTGA
chr12	101745706	101745707	chr12:101745707:T:C	rs10219650	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	102636360	102636361	chr12:102636361:T:A	rs833729	T	A	A	Sox1.mouse_HMG_3	9	1	+	4.3010880402328215	-2.5858214675676856	TCACTACCATTTT
chr12	102949240	102949241	chr12:102949241:C:A	rs568205125	C	A	C	Sox1.mouse_HMG_3	0	1	+	5.230479535006069	9.256902080742709	CCAATGACATTGC
chr12	103162330	103162331	chr12:103162331:T:C	rs7956099	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr12	103809376	103809377	chr12:103809377:T:C	rs141300575	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr12	104137027	104137028	chr12:104137028:C:A	rs7979713	C	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	104137027	104137028	chr12:104137028:C:T	chr12:104137028:C:T	C	T	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	104296193	104296194	chr12:104296194:G:A	rs1182163292	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	104315780	104315781	chr12:104315781:C:T	rs4964287	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr12	104355024	104355025	chr12:104355025:C:A	rs17202520	C	A	A	Sox1.mouse_HMG_3	6	1	-	5.228323102628504	5.140207884296718	TCAATTGCACTGC
chr12	104355035	104355036	chr12:104355036:C:T	rs28672744	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	104439181	104439182	chr12:104439182:A:C	rs57712028	A	C	A	Sox1.mouse_HMG_3	0	1	-	6.745285845521979	-0.10689329657130608	TCACTTACAGTGT
chr12	104680985	104680986	chr12:104680986:T:C	rs835480	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr12	104682778	104682779	chr12:104682779:C:T	rs75889538	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr12	104751393	104751394	chr12:104751394:G:T	rs2468109	G	T	g	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr12	104943588	104943589	chr12:104943589:G:A	rs12579469	G	A	g	Sox1.mouse_HMG_3	11	1	+	4.9883915539989605	0.8785511230130632	TTAATGACATCGA
chr12	105109637	105109638	chr12:105109638:T:G	rs17036655	T	G	T	Sox1.mouse_HMG_3	2	1	+	3.851673061746276	3.851673061746276	TCTCTAGCATTGT
chr12	105166345	105166346	chr12:105166346:T:C	rs1206559	T	C	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr12	105330372	105330373	chr12:105330373:C:G	chr12:105330373:C:G	C	G	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	105627837	105627838	chr12:105627838:G:A	rs4483695	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr12	106022504	106022505	chr12:106022505:G:A	rs17038009	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr12	106268767	106268768	chr12:106268768:T:C	rs1148412	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr12	106405351	106405352	chr12:106405352:A:C	rs2250262	A	C	A	Sox1.mouse_HMG_3	12	1	+	10.804723777994125	8.305505874176276	TTAATACCATTGA
chr12	106480341	106480342	chr12:106480342:G:T	rs574021543	G	T	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	106896214	106896215	chr12:106896215:G:A	chr12:106896215:G:A	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	107014358	107014359	chr12:107014359:G:A	rs75063577	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr12	107014378	107014379	chr12:107014379:G:C	rs10746073	G	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr12	107129590	107129591	chr12:107129591:C:A	rs1481621584	C	A	c	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr12	107520801	107520802	chr12:107520802:G:A	rs11113367	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	107520810	107520811	chr12:107520811:G:T	rs61938450	G	T	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	107629808	107629809	chr12:107629809:A:G	rs7976658	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr12	108081224	108081225	chr12:108081225:C:A	rs1896091	C	A	A	Sox1.mouse_HMG_3	12	1	-	5.052477077741333	5.92700451199339	TCACTTGCATTAG
chr12	108201782	108201783	chr12:108201783:C:A	rs11113772	C	A	C	Sox1.mouse_HMG_3	3	1	+	5.462074745104003	7.626239274300426	TCACCTTCATTGA
chr12	108270021	108270022	chr12:108270022:C:A	rs7958842	C	A	C	Sox1.mouse_HMG_3	5	1	-	5.284133141238696	5.793223014223576	TCAATGACATTTT
chr12	108304116	108304117	chr12:108304117:T:C	rs4964243	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr12	108392402	108392403	chr12:108392403:A:G	rs75510106	A	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr12	108622632	108622633	chr12:108622633:G:A	rs1005333468	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	108636952	108636953	chr12:108636953:T:C	rs10746127	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.199517554478831	-2.6873919533216766	TCACTACCATGGC
chr12	109137150	109137151	chr12:109137151:C:T	rs1654884	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	109291921	109291922	chr12:109291922:C:T	rs974325382	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	109304643	109304644	chr12:109304644:C:T	rs978554675	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	109702583	109702584	chr12:109702584:T:C	rs1420746	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	109711904	109711905	chr12:109711905:C:A	rs4766483	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr12	109951659	109951660	chr12:109951660:T:C	rs111835427	T	C	T	Sox1.mouse_HMG_3	6	1	+	4.899551537641425	5.412629352751896	ACATTTTCATTGA
chr12	110537084	110537085	chr12:110537085:T:C	rs10849900	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr12	110782003	110782004	chr12:110782004:C:A	rs11834902	C	A	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr12	110852916	110852917	chr12:110852917:A:G	rs78915675	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	110893332	110893333	chr12:110893333:C:T	rs74897448	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	110893351	110893352	chr12:110893352:T:A	rs11065751	T	A	T	Sox1.mouse_HMG_3	8	1	-	9.342678942489412	2.433924163174192	ACAATGACATTGT
chr12	110893360	110893361	chr12:110893361:G:A	rs11065752	G	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	111413460	111413461	chr12:111413461:T:A	rs12297345	T	A	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr12	111467838	111467839	chr12:111467839:T:G	chr12:111467839:T:G	T	G	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	112025491	112025492	chr12:112025492:A:G	rs4767293	A	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	112666081	112666082	chr12:112666082:G:A	rs184364245	G	A	G	Sox1.mouse_HMG_3	6	1	+	4.989316592889178	5.4658325325444	ACACATGCATTGA
chr12	112907057	112907058	chr12:112907058:A:C	rs1301618455	A	C	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr12	112926698	112926699	chr12:112926699:A:G	rs10850099	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	112926706	112926707	chr12:112926707:T:C	rs10850100	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr12	113009766	113009767	chr12:113009767:C:T	rs1293743	C	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	113054076	113054077	chr12:113054077:G:A	rs7134416	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr12	113831180	113831181	chr12:113831181:C:T	rs116590798	C	T	C	Sox1.mouse_HMG_3	1	1	+	8.714342171231992	3.756069940118366	TCAAAACCATTGT
chr12	114179111	114179112	chr12:114179112:C:T	rs4767233	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr12	114316454	114316455	chr12:114316455:G:C	rs76857415	G	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr12	114675900	114675901	chr12:114675901:C:T	rs113723401	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	114752795	114752796	chr12:114752796:G:A	rs11067280	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	114936275	114936276	chr12:114936276:T:G	rs2384556	T	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	114981690	114981691	chr12:114981691:T:C	rs7975876	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	115172477	115172478	chr12:115172478:C:T	rs144039348	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr12	115599325	115599326	chr12:115599326:G:C	rs1226509484	G	C	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr12	115813430	115813431	chr12:115813431:C:T	rs697863	C	T	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr12	116060848	116060849	chr12:116060849:T:C	rs11067896	T	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr12	116130617	116130618	chr12:116130618:T:C	rs4767386	T	C	c	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	116411232	116411233	chr12:116411233:G:A	rs10850627	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr12	116456541	116456542	chr12:116456542:C:T	rs1028304091	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	116456566	116456567	chr12:116456567:T:G	rs71469762	T	G	T	Sox1.mouse_HMG_3	2	1	-	7.359708176190605	0.4509533968753854	TCAAAACCAGTGA
chr12	116490504	116490505	chr12:116490505:A:G	rs1241239	A	G	a	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	116583402	116583403	chr12:116583403:C:G	rs11831824	C	G	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr12	116714988	116714989	chr12:116714989:A:G	rs10507273	A	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr12	116718888	116718889	chr12:116718889:C:G	rs551453663	C	G	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr12	116960642	116960643	chr12:116960643:T:C	rs4542506	T	C	C	Sox1.mouse_HMG_3	9	1	+	5.674000370867544	-1.212909136932964	TCATTACCATTGG
chr12	117036245	117036246	chr12:117036246:A:G	rs7978495	A	G	A	Sox1.mouse_HMG_3	9	1	+	4.869210476760051	7.988044947448026	ACAATGACAATGA
chr12	117083374	117083375	chr12:117083375:A:G	rs10744890	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr12	117309681	117309682	chr12:117309682:C:T	rs10850810	C	T	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	117320102	117320103	chr12:117320103:G:A	rs4766843	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr12	117811030	117811031	chr12:117811031:A:G	rs74828719	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr12	117904328	117904329	chr12:117904329:A:G	rs12299038	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	117929003	117929004	chr12:117929004:G:A	rs714325	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	118135834	118135835	chr12:118135835:C:G	rs1021242395	C	G	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	118356250	118356251	chr12:118356251:A:G	rs180994040	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.01794278231724	0.13103327451673286	TCAATACCATCAA
chr12	118499899	118499900	chr12:118499900:G:T	rs539248970	G	T	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr12	118560334	118560335	chr12:118560335:A:G	rs7958352	A	G	G	Sox1.mouse_HMG_3	0	1	-	4.3625832945977905	-2.4895958474954933	TCTATTCCAGTGA
chr12	118625580	118625581	chr12:118625581:A:C	rs10851002	A	C	A	Sox1.mouse_HMG_3	1	1	+	4.853367197201214	11.756119984560558	AAAATGACATTGA
chr12	118753913	118753914	chr12:118753914:A:G	rs10851030	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr12	118837901	118837902	chr12:118837902:T:C	rs2698086	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr12	118901523	118901524	chr12:118901524:G:A	rs11069159	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	119036281	119036282	chr12:119036282:C:G	rs1525971	C	G	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr12	119084514	119084515	chr12:119084515:C:T	rs10774485	C	T	c	Sox1.mouse_HMG_3	9	1	-	6.904237585617178	3.785403114929203	TCACTATCAGTGT
chr12	119132675	119132676	chr12:119132676:G:A	rs4073207	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	119180085	119180086	chr12:119180086:A:G	rs73412044	A	G	A	Sox1.mouse_HMG_3	6	1	-	7.846556026373069	8.359633841483538	ACACTATCATTGT
chr12	119419273	119419274	chr12:119419274:C:T	rs7296648	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr12	120231366	120231367	chr12:120231367:A:T	rs73415014	A	T	A	Sox1.mouse_HMG_3	8	1	+	6.449458945421959	-0.4592958338932618	TCAATACCATAGT
chr12	120237213	120237214	chr12:120237214:A:C	rs79571853	A	C	-	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr12	120291945	120291946	chr12:120291946:T:C	rs914911617	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr12	120291952	120291953	chr12:120291953:A:T	rs7311566	A	T	A	Sox1.mouse_HMG_3	6	1	+	5.356455078230219	4.7918239202432105	ACCATTACATTGA
chr12	120291953	120291954	chr12:120291954:C:T	rs142705282	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.356455078230219	1.7239875871350263	ACCATTACATTGA
chr12	120514009	120514010	chr12:120514010:G:A	rs73403947	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr12	120536706	120536707	chr12:120536707:C:T	rs614226	C	T	C	Sox1.mouse_HMG_3	11	1	-	7.7056957349316395	3.595855303945741	TCAATTGCTTTGA
chr12	120754944	120754945	chr12:120754945:C:T	rs1307439691	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr12	120792230	120792231	chr12:120792231:C:G	rs73229114	C	G	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr12	120892227	120892228	chr12:120892228:T:C	rs11065314	T	C	t	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr12	121051644	121051645	chr12:121051645:G:A	rs10849836	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr12	121099879	121099880	chr12:121099880:G:A	rs2263271	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	121244247	121244248	chr12:121244248:T:C	rs2686340	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	122030366	122030367	chr12:122030367:C:T	rs2272133	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr12	122129839	122129840	chr12:122129840:T:G	rs7487292	T	G	G	Sox1.mouse_HMG_3	10	1	+	5.988339074028612	-0.9117569475860354	TCACTTCCACTGA
chr12	122681948	122681949	chr12:122681949:T:C	rs542990628	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr12	122849485	122849486	chr12:122849486:C:G	rs2292134	C	G	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr12	122875758	122875759	chr12:122875759:C:G	rs73406944	C	G	g	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	123094490	123094491	chr12:123094491:G:A	rs73413223	G	A	G	Sox1.mouse_HMG_3	10	1	+	4.804470620069374	4.804470620069374	ACAATGCCATGGA
chr12	123267715	123267716	chr12:123267716:C:T	rs10083067	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr12	123472201	123472202	chr12:123472202:A:G	rs3087496	A	G	A	Sox1.mouse_HMG_3	6	1	-	3.734356618889724	4.247434434000194	CCACTATCATTGC
chr12	123655049	123655050	chr12:123655050:A:G	rs4930737	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.228591856236568	-1.5724353056804374	TCAATTTCATTTT
chr12	123868303	123868304	chr12:123868304:G:T	rs77819225	G	T	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr12	124091011	124091012	chr12:124091012:T:A	rs825481	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.82084230909382	-2.0879124702214003	ACAATTTGATTGA
chr12	124171747	124171748	chr12:124171748:G:A	rs76907596	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr12	124237079	124237080	chr12:124237080:T:C	rs924425	T	C	T	Sox1.mouse_HMG_3	5	1	-	5.88858557487535	4.655912803808262	ACAAAACCATTGT
chr12	124497531	124497532	chr12:124497532:A:G	rs66494628	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr12	124519735	124519736	chr12:124519736:C:A	rs11057651	C	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr12	124679959	124679960	chr12:124679960:C:T	rs4765600	C	T	C	Sox1.mouse_HMG_3	8	1	+	2.95818602571117	2.95818602571117	TCACTGCCCTTGC
chr12	124693439	124693440	chr12:124693440:C:T	rs1554769	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	124741224	124741225	chr12:124741225:C:T	rs149657706	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	125056400	125056401	chr12:125056401:A:C	rs7304220	A	C	c	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	125137715	125137716	chr12:125137716:G:A	rs12581512	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr12	125329392	125329393	chr12:125329393:C:G	rs11058141	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr12	126061769	126061770	chr12:126061770:T:C	rs758548	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr12	126139617	126139618	chr12:126139618:T:C	rs7960175	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr12	127052838	127052839	chr12:127052839:C:T	rs7295436	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr12	127161688	127161689	chr12:127161689:T:C	rs7298267	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr12	127489307	127489308	chr12:127489308:C:T	rs117270399	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	127490732	127490733	chr12:127490733:A:T	rs10847381	A	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr12	127551198	127551199	chr12:127551199:G:T	rs7973617	G	T	G	Sox1.mouse_HMG_3	10	1	+	5.850604268564787	12.750700290179433	TCAATATCATGGC
chr12	127606381	127606382	chr12:127606382:T:G	rs7955165	T	G	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr12	127683058	127683059	chr12:127683059:G:A	rs7315902	G	A	g	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr12	128031412	128031413	chr12:128031413:G:A	rs760094487	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr12	128128960	128128961	chr12:128128961:T:G	rs12811629	T	G	T	Sox1.mouse_HMG_3	4	1	-	4.49453077959296	2.2296475537829274	TCACAGACATTGG
chr12	128339967	128339968	chr12:128339968:T:C	rs1621093	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.987666755973212	-1.921088023342009	ACAGTTGCATTGA
chr12	128479679	128479680	chr12:128479680:G:A	rs73422525	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr12	128491290	128491291	chr12:128491291:T:C	rs7136651	T	C	C	Sox1.mouse_HMG_3	4	1	+	5.603522036657205	-1.2965739849574436	ACAATAGCGTTGA
chr12	128491294	128491295	chr12:128491295:G:A	rs7300144	G	A	G	Sox1.mouse_HMG_3	8	1	+	5.603522036657205	12.512276815972424	ACAATAGCGTTGA
chr12	128500032	128500033	chr12:128500033:G:C	rs11608385	G	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	128581173	128581174	chr12:128581174:C:A	rs7135555	C	A	A	Sox1.mouse_HMG_3	9	1	+	5.479249201043732	5.479249201043732	TCACTGCCACTGA
chr12	128702883	128702884	chr12:128702884:G:T	rs7302992	G	T	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr12	128763820	128763821	chr12:128763821:G:A	rs2398430	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr12	128763840	128763841	chr12:128763841:T:C	rs2398431	T	C	C	Sox1.mouse_HMG_3	2	1	-	4.336847759102071	-2.571907020213149	TCACCAACATTGT
chr12	128974342	128974343	chr12:128974343:T:C	rs76571605	T	C	t	Sox1.mouse_HMG_3	8	1	-	6.970929941639515	0.06217516232429543	TCAAAGGCATTGC
chr12	128992034	128992035	chr12:128992035:T:C	rs489270	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.215136588814364	-1.6370425532789212	TCAAGTGCATTGC
chr12	128992042	128992043	chr12:128992043:A:G	rs489304	A	G	a	Sox1.mouse_HMG_3	8	1	+	5.215136588814364	-1.6936181905008574	TCAAGTGCATTGC
chr12	129065169	129065170	chr12:129065170:C:T	rs3851668	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr12	129080629	129080630	chr12:129080630:C:A	rs77784796	C	A	C	Sox1.mouse_HMG_3	1	1	+	5.477071459055184	-1.4256813283041623	ACAATCGCATTGC
chr12	129276502	129276503	chr12:129276503:C:T	rs11060230	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr12	129393867	129393868	chr12:129393868:C:T	rs117438223	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr12	129502324	129502325	chr12:129502325:G:A	rs61945369	G	A	G	Sox1.mouse_HMG_3	2	1	+	4.190858796778258	11.099613576093477	TCGCTACCATTGC
chr12	129660190	129660191	chr12:129660191:A:G	rs10773692	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.772469354689434	-1.1276266669252135	TCACTAACAGTAA
chr12	129710832	129710833	chr12:129710833:G:A	rs61275798	G	A	G	Sox1.mouse_HMG_3	3	1	-	9.591955455364134	4.955092822643554	ACACTGACATTGA
chr12	129956064	129956065	chr12:129956065:G:C	rs115236364	G	C	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr12	130006642	130006643	chr12:130006643:G:A	rs115732538	G	A	G	Sox1.mouse_HMG_3	9	1	+	6.2111626813297125	3.092328210641738	TCAAATGCAGTGA
chr12	130006657	130006658	chr12:130006658:C:T	rs12307812	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr12	130110803	130110804	chr12:130110804:T:C	rs12296476	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr12	130220097	130220098	chr12:130220098:T:A	rs11614173	T	A	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr12	130316585	130316586	chr12:130316586:T:C	rs12229502	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.930060729195999	-0.9700352924186493	TCTATAGCATTGC
chr12	130578982	130578983	chr12:130578983:T:C	rs11061005	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.952067309701304	0.3168545138966894	TCACATCCATTGG
chr12	130668200	130668201	chr12:130668201:T:A	rs60876022	T	A	T	Sox1.mouse_HMG_3	5	1	+	11.788693917890216	12.512276815972424	ACAATTGCATTGA
chr12	130741390	130741391	chr12:130741391:G:A	chr12:130741391:G:A	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	131130053	131130054	chr12:131130054:C:T	rs9669002	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr12	131188706	131188707	chr12:131188707:G:A	rs4430590	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr12	131362593	131362594	chr12:131362594:G:A	rs12314372	G	A	g	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr12	131362609	131362610	chr12:131362610:A:G	rs7138777	A	G	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr12	131583730	131583731	chr12:131583731:A:G	rs11246874	A	G	A	Sox1.mouse_HMG_3	10	1	-	8.412610223235227	3.7773974274306155	ACAATTTCATTGG
chr12	131674176	131674177	chr12:131674177:C:A	rs7971886	C	A	A	Sox1.mouse_HMG_3	5	1	-	4.018014839937738	4.527104712922618	TCACAGGCATTGG
chr12	131674183	131674184	chr12:131674184:A:G	rs7977514	A	G	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr12	131867582	131867583	chr12:131867583:T:C	rs11246859	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr12	131867590	131867591	chr12:131867591:C:A	rs10902464	C	A	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr12	131963397	131963398	chr12:131963398:C:T	rs58728522	C	T	T	Sox1.mouse_HMG_3	11	1	-	4.3625832945977905	0.2527428636118927	TCAATTCCTGTGA
chr12	132300935	132300936	chr12:132300936:T:C	rs28569099	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.216786174354869	-1.6833098472597776	TCAATGCCATGGT
chr12	132334409	132334410	chr12:132334410:C:T	rs28538747	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr12	132773033	132773034	chr12:132773034:C:G	rs3741483	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr12	132899178	132899179	chr12:132899179:G:A	rs11147152	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr12	132954694	132954695	chr12:132954695:C:G	rs371071587	C	G	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr12	132954732	132954733	chr12:132954733:C:A	rs12320945	C	A	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr12	133236885	133236886	chr12:133236886:G:C	rs148437181	G	C	.	Sox1.mouse_HMG_3	1	1	-	6.690076700596107	-0.21267608676323735	TCACTACCTTTGA
chr12	133262440	133262441	chr12:133262441:A:C	rs138324778	A	C	.	Sox1.mouse_HMG_3	5	1	+	5.19554364699418	0.6595561938947878	TCACAACCAGTGA
chr13	18250720	18250721	chr13:18250721:T:C	rs1335346869	T	C	.	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr13	18953065	18953066	chr13:18953066:T:G	rs9317779	T	G	.	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	19240620	19240621	chr13:19240621:A:G	rs7322424	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr13	19735716	19735717	chr13:19735717:A:G	rs11618455	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.97470867219741	0.08779916439690161	ACAATTAAATTGA
chr13	20073772	20073773	chr13:20073773:T:C	rs34548708	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr13	20512459	20512460	chr13:20512460:G:A	rs7139733	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr13	20835538	20835539	chr13:20835539:C:T	rs7323504	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr13	20843954	20843955	chr13:20843955:T:G	rs716480	T	G	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr13	20892729	20892730	chr13:20892730:G:A	rs6490624	G	A	A	Sox1.mouse_HMG_3	11	1	+	5.940138917751886	1.8302984867659884	ACAAAAACATTGT
chr13	21216637	21216638	chr13:21216638:G:C	rs7317001	G	C	.	Sox1.mouse_HMG_3	6	1	-	5.604598179865155	5.179635583086469	ACAATTCCATTAC
chr13	21596135	21596136	chr13:21596136:C:T	rs11148172	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr13	21906676	21906677	chr13:21906677:C:T	rs9506753	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.29607129537354	-0.6622009357400844	TCAACACCATTCA
chr13	23182894	23182895	chr13:23182895:A:G	rs544497	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr13	23321458	23321459	chr13:23321459:T:C	rs521600	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr13	23490401	23490402	chr13:23490402:G:A	rs79598955	G	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	23644048	23644049	chr13:23644049:T:C	rs111802931	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr13	23656716	23656717	chr13:23656717:C:G	rs188730339	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr13	23750407	23750408	chr13:23750408:G:A	rs78518128	G	A	g	Sox1.mouse_HMG_3	5	1	+	7.673121801601981	8.90579457266907	TCAATGACCTTGA
chr13	23751912	23751913	chr13:23751913:G:C	rs17336602	G	C	g	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr13	23964233	23964234	chr13:23964234:T:C	rs1570888	T	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr13	23985204	23985205	chr13:23985205:A:G	rs2810693	A	G	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr13	24068609	24068610	chr13:24068610:C:T	rs7320360	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr13	24068789	24068790	chr13:24068790:T:A	rs9551049	T	A	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr13	24112106	24112107	chr13:24112107:C:G	rs147864790	C	G	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr13	24120347	24120348	chr13:24120348:A:G	rs1325664	A	G	A	Sox1.mouse_HMG_3	5	1	+	6.741630043472645	5.508957272405556	TCACTAACTTTGA
chr13	24167728	24167729	chr13:24167729:G:T	rs1220582	G	T	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr13	24186768	24186769	chr13:24186769:G:A	rs2760359	G	A	A	Sox1.mouse_HMG_3	7	1	-	6.0158375909427	2.3833700998475087	TCAATAGCGTTGT
chr13	24221026	24221027	chr13:24221027:A:C	rs2027437	A	C	C	Sox1.mouse_HMG_3	4	1	-	7.921264903236915	1.0211688816222688	TCAATGCCATTAC
chr13	24364362	24364363	chr13:24364363:C:T	rs9553258	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr13	25031392	25031393	chr13:25031393:A:G	chr13:25031393:A:G	A	G	a	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr13	25181393	25181394	chr13:25181394:A:T	rs7987107	A	T	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr13	25189362	25189363	chr13:25189363:C:G	rs9581293	C	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr13	25473004	25473005	chr13:25473005:A:G	rs7984062	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr13	25473045	25473046	chr13:25473046:T:G	rs7988711	T	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr13	25574744	25574745	chr13:25574745:G:A	rs114732518	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr13	25848679	25848680	chr13:25848680:G:A	rs9581464	G	A	g	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr13	25921169	25921170	chr13:25921170:T:C	rs1181998	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.563626122994085	-0.32328338480642205	TCACTCCCATTGC
chr13	26469759	26469760	chr13:26469760:T:C	rs4427654	T	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr13	26708464	26708465	chr13:26708465:T:A	rs4771005	T	A	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr13	26719984	26719985	chr13:26719985:C:T	rs9581728	C	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr13	26910445	26910446	chr13:26910446:C:G	rs9319325	C	G	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr13	27522967	27522968	chr13:27522968:C:T	rs2181777	C	T	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr13	27523003	27523004	chr13:27523004:G:T	rs2181778	G	T	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr13	27803608	27803609	chr13:27803609:G:A	rs6491230	G	A	a	Sox1.mouse_HMG_3	7	1	-	3.7745549577001465	0.14208746660495408	TCACTAGCATAGC
chr13	27826547	27826548	chr13:27826548:T:C	rs74043609	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr13	27826551	27826552	chr13:27826552:G:A	rs761231199	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr13	28032131	28032132	chr13:28032132:T:G	rs9512989	T	G	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr13	28534349	28534350	chr13:28534350:A:G	rs9551485	A	G	a	Sox1.mouse_HMG_3	3	1	+	5.905666131640158	-0.8953610302768475	TCAATACAATTCA
chr13	28550280	28550281	chr13:28550281:C:T	rs76244930	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr13	28559718	28559719	chr13:28559719:T:C	rs56999442	T	C	C	Sox1.mouse_HMG_3	4	1	+	4.3967899919871485	-2.503306029627497	TCACTACCATCCA
chr13	28564118	28564119	chr13:28564119:T:C	rs7320190	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr13	28742400	28742401	chr13:28742401:G:A	rs12867487	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr13	28963833	28963834	chr13:28963834:C:G	rs118155935	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr13	28963857	28963858	chr13:28963858:A:T	rs595628	A	T	T	Sox1.mouse_HMG_3	12	1	+	6.712775352785773	4.299334310714627	ACAATGGCATTCA
chr13	29073140	29073141	chr13:29073141:A:G	rs9508257	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	29435654	29435655	chr13:29435655:T:C	rs73444037	T	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr13	29852626	29852627	chr13:29852627:T:G	rs80171055	T	G	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr13	29862094	29862095	chr13:29862095:T:C	rs141338098	T	C	T	Sox1.mouse_HMG_3	9	1	+	10.760427841061496	3.873518333260989	TCACTAGCATTGT
chr13	29925871	29925872	chr13:29925872:T:G	rs9508593	T	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr13	30096126	30096127	chr13:30096127:A:G	rs571845	A	G	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr13	30112980	30112981	chr13:30112981:A:C	rs542730	A	C	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr13	30293990	30293991	chr13:30293991:T:C	rs9506282	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr13	30307603	30307604	chr13:30307604:A:G	rs73445810	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr13	30307620	30307621	chr13:30307621:G:A	chr13:30307621:G:A	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.955092822643554	0.8452523916576551	ACAGTGACATTGA
chr13	30307626	30307627	chr13:30307627:G:A	rs187937337	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	30360705	30360706	chr13:30360706:A:G	rs9578165	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.952067309701304	-1.956687469613917	TCACATCCATTGG
chr13	30467952	30467953	chr13:30467953:T:C	rs76914980	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr13	30570072	30570073	chr13:30570073:G:C	rs190291272	G	C	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr13	30570109	30570110	chr13:30570110:G:A	rs746548435	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr13	30702160	30702161	chr13:30702161:G:C	rs9506345	G	C	G	Sox1.mouse_HMG_3	11	1	+	6.294132492668032	1.727303800548468	TCACTAGGATTGA
chr13	31050606	31050607	chr13:31050607:A:G	rs17537328	A	G	A	Sox1.mouse_HMG_3	5	1	+	6.497375824943321	5.264703053876232	GCAATACCATTGT
chr13	31090966	31090967	chr13:31090967:T:C	rs7990345	T	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr13	31122352	31122353	chr13:31122353:C:T	rs9537875	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr13	31122364	31122365	chr13:31122365:T:C	rs9315112	T	C	C	Sox1.mouse_HMG_3	10	1	+	4.336847759102071	-0.298365036702543	TCACCAACATTGT
chr13	31122373	31122374	chr13:31122374:C:T	rs117455105	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr13	31638253	31638254	chr13:31638254:C:T	rs9548437	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr13	31751013	31751014	chr13:31751014:G:A	rs7327232	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr13	31767577	31767578	chr13:31767578:C:T	chr13:31767578:C:T	C	T	C	Sox1.mouse_HMG_3	9	1	-	3.937620697819106	0.8187862271311313	TCAATTGCTGTGA
chr13	31767583	31767584	chr13:31767584:T:A	rs17076640	T	A	T	Sox1.mouse_HMG_3	3	1	-	3.937620697819106	-2.8634064640978996	TCAATTGCTGTGA
chr13	31774435	31774436	chr13:31774436:T:C	rs7333829	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr13	31913007	31913008	chr13:31913008:G:A	rs17633839	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr13	32511331	32511332	chr13:32511332:T:G	rs207637	T	G	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr13	32687407	32687408	chr13:32687408:T:A	rs3858846	T	A	T	Sox1.mouse_HMG_3	8	1	-	6.989773145107579	0.08101836579236021	TCACTACCATTAC
chr13	33006716	33006717	chr13:33006717:A:G	rs371126	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr13	33107029	33107030	chr13:33107030:C:A	rs554588	C	A	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr13	33115883	33115884	chr13:33115884:A:G	rs9527088	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr13	33139485	33139486	chr13:33139486:T:C	rs114280815	T	C	T	Sox1.mouse_HMG_3	5	1	-	6.037099826925097	4.804427055858008	TCACAATCATTGT
chr13	33166079	33166080	chr13:33166080:T:C	rs17078655	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr13	33166080	33166081	chr13:33166081:G:A	rs76861306	G	A	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr13	33176043	33176044	chr13:33176044:T:A	rs11841728	T	A	T	Sox1.mouse_HMG_3	5	1	+	5.631440427892475	6.355023325974683	TCAATTCCTTTGC
chr13	33180594	33180595	chr13:33180595:G:A	rs748953611	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr13	33180615	33180616	chr13:33180616:C:G	rs1337834161	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr13	33252637	33252638	chr13:33252638:A:G	rs17597518	A	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr13	33281685	33281686	chr13:33281686:C:T	rs74556393	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr13	33281697	33281698	chr13:33281698:T:C	rs78398649	T	C	T	Sox1.mouse_HMG_3	10	1	+	7.533222743041442	2.8980099472368273	TCAAAGACATTGT
chr13	33283542	33283543	chr13:33283543:A:G	rs4445771	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr13	33352317	33352318	chr13:33352318:T:C	rs7996816	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr13	33629923	33629924	chr13:33629924:C:T	rs9315232	C	T	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr13	33643143	33643144	chr13:33643144:C:A	rs4941757	C	A	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr13	33687285	33687286	chr13:33687286:T:C	rs34270238	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.678853486904318	0.7787574652896714	ACAATTGCATTAA
chr13	33724361	33724362	chr13:33724362:T:C	rs17079650	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.402436384986526	1.4936816056713065	ACAATAGCATTAA
chr13	33728039	33728040	chr13:33728040:G:C	rs9598035	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr13	33737194	33737195	chr13:33737195:C:A	rs9598044	C	A	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr13	33743709	33743710	chr13:33743710:C:T	rs9538521	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr13	33744048	33744049	chr13:33744049:G:A	rs12857048	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr13	33744071	33744072	chr13:33744072:T:C	rs7139476	T	C	C	Sox1.mouse_HMG_3	10	1	+	7.092737551546286	2.4575247557416717	ACACTGACATTGC
chr13	33818771	33818772	chr13:33818772:G:A	rs3135537	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	34347512	34347513	chr13:34347513:G:A	rs58998397	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr13	34428333	34428334	chr13:34428334:A:T	rs73181242	A	T	A	Sox1.mouse_HMG_3	6	1	+	6.492353530597924	5.927722372610916	TCAATAACCTTGT
chr13	34817264	34817265	chr13:34817265:C:T	rs9599692	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr13	34817286	34817287	chr13:34817287:A:G	rs79327294	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.631440427892477	-1.2554690799080321	TCCATTCCATTGC
chr13	34942377	34942378	chr13:34942378:T:C	rs376880515	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.414852140201248	0.5147561185866025	TCAATAGCATCGG
chr13	35164744	35164745	chr13:35164745:G:A	rs76006897	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr13	35346333	35346334	chr13:35346334:A:G	rs1856379	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr13	35755757	35755758	chr13:35755758:T:C	rs9530985	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr13	35755790	35755791	chr13:35755791:C:A	rs11843181	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr13	35781542	35781543	chr13:35781543:C:T	rs9545332	C	T	T	Sox1.mouse_HMG_3	3	1	+	9.948729724647503	5.311867091926922	TCACTTTCATTGT
chr13	35961234	35961235	chr13:35961235:A:G	rs142040125	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr13	36155556	36155557	chr13:36155557:G:C	rs1928018	G	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr13	36198243	36198244	chr13:36198244:G:A	rs2149423	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr13	36686233	36686234	chr13:36686234:G:C	rs1980203	G	C	G	Sox1.mouse_HMG_3	7	1	-	5.8564543515812595	-1.0232820388833521	ACACTTGCAGTGA
chr13	36815096	36815097	chr13:36815097:A:G	rs4943418	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr13	36904368	36904369	chr13:36904369:C:T	rs527929	C	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr13	37919462	37919463	chr13:37919463:A:T	rs13378806	A	T	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr13	37946006	37946007	chr13:37946007:C:T	rs9548115	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr13	38399156	38399157	chr13:38399157:T:C	rs151218375	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	38399203	38399204	chr13:38399204:A:G	rs140365958	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr13	38814224	38814225	chr13:38814225:G:A	rs11618193	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr13	39269476	39269477	chr13:39269477:A:C	rs2875295	A	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr13	39515067	39515068	chr13:39515068:C:G	rs9315697	C	G	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr13	39522600	39522601	chr13:39522601:A:G	rs1885760	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.430561681501699	-1.478193097813521	ACACTGCCATTAA
chr13	39722235	39722236	chr13:39722236:G:T	rs9603602	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr13	39765540	39765541	chr13:39765541:A:G	rs4603426	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.168721467898999	0.3676943059819937	TCAATCACATTAA
chr13	39969355	39969356	chr13:39969356:T:C	rs9549021	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr13	40002189	40002190	chr13:40002190:C:T	rs185398242	C	T	c	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr13	40076862	40076863	chr13:40076863:G:A	rs414770	G	A	A	Sox1.mouse_HMG_3	11	1	+	4.39165239108439	0.28181196009849163	TCAATCACAATGA
chr13	40183633	40183634	chr13:40183634:A:T	rs9549095	A	T	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr13	40340402	40340403	chr13:40340403:G:A	rs4941970	G	A	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr13	40355883	40355884	chr13:40355884:T:C	rs36047453	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr13	40799117	40799118	chr13:40799118:G:A	rs41396747	G	A	.	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr13	40878684	40878685	chr13:40878685:T:C	rs7997536	T	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr13	40878722	40878723	chr13:40878723:T:C	rs7997560	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr13	41179673	41179674	chr13:41179674:T:C	rs56214608	T	C	t	Sox1.mouse_HMG_3	3	1	-	8.9826252530669	2.1815980911498936	TCAATATCAGTGC
chr13	41216447	41216448	chr13:41216448:A:C	rs74345847	A	C	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr13	41557059	41557060	chr13:41557060:G:A	rs7337255	G	A	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr13	41650915	41650916	chr13:41650916:T:C	rs12861799	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.82642889336527	-1.0823258859499505	TCACTCACATTGG
chr13	41751058	41751059	chr13:41751059:A:G	rs12584644	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr13	41837965	41837966	chr13:41837966:A:G	rs73185309	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr13	41960014	41960015	chr13:41960015:A:G	rs117166704	A	G	A	Sox1.mouse_HMG_3	6	1	-	7.749952481999811	8.26303029711028	TCAATGTCAGTGC
chr13	41974842	41974843	chr13:41974843:A:G	rs7328352	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	42066204	42066205	chr13:42066205:A:G	rs6561033	A	G	A	Sox1.mouse_HMG_3	7	1	-	5.742785384723877	9.37525287581907	ACAATTGTATTGT
chr13	42164974	42164975	chr13:42164975:C:G	chr13:42164975:C:G	C	G	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr13	42524191	42524192	chr13:42524192:A:G	rs4942139	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr13	42524210	42524211	chr13:42524211:A:G	rs4941432	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr13	42696380	42696381	chr13:42696381:C:T	rs1169791	C	T	c	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr13	42877309	42877310	chr13:42877310:T:C	rs80092417	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.560954521183575	-0.3259549866169329	TCAAAACCATTCA
chr13	43049293	43049294	chr13:43049294:A:G	rs17064072	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr13	43150602	43150603	chr13:43150603:T:A	rs74594512	T	A	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr13	43222143	43222144	chr13:43222144:C:A	rs61950455	C	A	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr13	43343987	43343988	chr13:43343988:G:A	rs1317310	G	A	A	Sox1.mouse_HMG_3	11	1	+	11.941196112065553	7.831355681079655	TCACTGGCATTGA
chr13	43441443	43441444	chr13:43441444:A:G	rs13378681	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr13	43552191	43552192	chr13:43552192:G:A	rs76166014	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr13	43788089	43788090	chr13:43788090:T:C	rs77634831	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr13	43789000	43789001	chr13:43789001:A:G	rs75651784	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr13	43830231	43830232	chr13:43830232:C:T	rs9634665	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr13	44050602	44050603	chr13:44050603:G:T	rs78612588	G	T	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr13	44126717	44126718	chr13:44126718:G:A	rs9567373	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr13	44136424	44136425	chr13:44136425:A:G	rs9525917	A	G	A	Sox1.mouse_HMG_3	12	1	-	6.4983555225537994	6.412578660807096	TAAATAACATTGT
chr13	44280122	44280123	chr13:44280123:A:T	rs9567398	A	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr13	44398040	44398041	chr13:44398041:T:C	rs118168855	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr13	44431576	44431577	chr13:44431577:A:G	rs9533848	A	G	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr13	44450591	44450592	chr13:44450592:T:G	chr13:44450592:T:G	T	G	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr13	44450594	44450595	chr13:44450595:C:G	chr13:44450595:C:G	C	G	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr13	45406496	45406497	chr13:45406497:G:C	rs7998179	G	C	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr13	45500688	45500689	chr13:45500689:A:C	chr13:45500689:A:C	A	C	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr13	45529799	45529800	chr13:45529800:A:G	rs2274285	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.1739038977841325	-1.6271232641328737	TCAATGACCTTGC
chr13	45564932	45564933	chr13:45564933:C:G	rs55924066	C	G	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr13	45701935	45701936	chr13:45701936:G:T	rs1952098	G	T	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr13	45737560	45737561	chr13:45737561:A:G	rs73189698	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr13	45807758	45807759	chr13:45807759:G:C	rs188644762	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	45807788	45807789	chr13:45807789:G:A	rs719401	G	A	A	Sox1.mouse_HMG_3	11	1	+	5.281631515182347	1.1717910841964487	TCATTGACATTGC
chr13	45807790	45807791	chr13:45807791:A:G	rs76807011	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr13	45882791	45882792	chr13:45882792:A:G	rs78074044	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	46039415	46039416	chr13:46039416:C:T	rs111875283	C	T	c	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr13	46211385	46211386	chr13:46211386:C:A	rs912784	C	A	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	46211390	46211391	chr13:46211391:G:A	rs137874703	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr13	46334262	46334263	chr13:46334263:T:C	rs12865017	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.351967108772076	-0.5349423990284325	TCACTTCCATTAT
chr13	46575732	46575733	chr13:46575733:T:A	rs17068387	T	A	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr13	46606535	46606536	chr13:46606536:G:A	rs7491248	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr13	47100934	47100935	chr13:47100935:G:A	rs2802397	G	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr13	47433682	47433683	chr13:47433683:C:T	rs9595687	C	T	c	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr13	48199604	48199605	chr13:48199605:T:G	rs9634814	T	G	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr13	48210351	48210352	chr13:48210352:T:C	rs187519156	T	C	T	Sox1.mouse_HMG_3	7	1	+	7.552922946744989	11.18539043784018	TCACTACTATTGT
chr13	48210356	48210357	chr13:48210357:T:A	rs192088366	T	A	T	Sox1.mouse_HMG_3	12	1	+	7.552922946744989	9.966363988816134	TCACTACTATTGT
chr13	48629698	48629699	chr13:48629699:G:A	rs59927903	G	A	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr13	48654620	48654621	chr13:48654621:T:C	rs11617224	T	C	T	Sox1.mouse_HMG_3	5	1	-	4.2756040712098535	3.042931300142765	GCAAAACCATTGA
chr13	48658254	48658255	chr13:48658255:A:G	rs1359108	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.706046715829483	-2.194049305785165	TCAATGGCATGGC
chr13	48860498	48860499	chr13:48860499:C:T	rs2217142	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr13	49078284	49078285	chr13:49078285:G:A	rs1359066	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr13	49302034	49302035	chr13:49302035:G:T	rs4245351	G	T	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr13	49428213	49428214	chr13:49428214:G:C	rs4941639	G	C	G	Sox1.mouse_HMG_3	7	1	-	4.326756051386132	-2.5529803390784784	TCAGAACCATTGA
chr13	49636099	49636100	chr13:49636100:C:T	rs575694122	C	T	C	Sox1.mouse_HMG_3	10	1	+	4.002668634228636	8.63788143003325	TCACTCGCATCGA
chr13	49764583	49764584	chr13:49764584:T:A	rs73485710	T	A	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	49840397	49840398	chr13:49840398:G:A	rs12585879	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr13	49840415	49840416	chr13:49840416:A:C	rs77579290	A	C	A	Sox1.mouse_HMG_3	9	1	-	5.1825626554847055	1.414487618372172	TCAAGGACATTGC
chr13	50156896	50156897	chr13:50156897:A:G	rs889800377	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr13	50167950	50167951	chr13:50167951:G:A	rs1798972	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr13	50306347	50306348	chr13:50306348:G:A	rs71436222	G	A	G	Sox1.mouse_HMG_3	11	1	-	5.480703534861474	3.163229829373678	TCAATAGAATTCA
chr13	50357428	50357429	chr13:50357429:G:T	rs12871645	G	T	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr13	50586526	50586527	chr13:50586527:A:G	rs1239695	A	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr13	50613751	50613752	chr13:50613752:A:G	rs139248268	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr13	50613786	50613787	chr13:50613787:C:T	rs771740458	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr13	50706553	50706554	chr13:50706554:G:A	rs797503	G	A	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr13	50708547	50708548	chr13:50708548:G:A	rs797510	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr13	50745817	50745818	chr13:50745818:T:C	rs139168771	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr13	50801834	50801835	chr13:50801835:A:G	rs9591364	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr13	50891646	50891647	chr13:50891647:C:G	rs9568487	C	G	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr13	50894243	50894244	chr13:50894244:G:A	rs11842683	G	A	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr13	51067903	51067904	chr13:51067904:T:C	rs9568502	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.7143544926322125	0.8142584710175644	TCAATTGCATAGA
chr13	51117002	51117003	chr13:51117003:T:C	rs59612004	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr13	51159555	51159556	chr13:51159556:C:G	rs9568536	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr13	51322182	51322183	chr13:51322183:C:T	rs9535644	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr13	52118966	52118967	chr13:52118967:C:T	rs73500160	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr13	52751902	52751903	chr13:52751903:T:C	rs74238283	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr13	52949816	52949817	chr13:52949817:C:T	rs2018259	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr13	52949818	52949819	chr13:52949819:C:T	rs1077506	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr13	53049099	53049100	chr13:53049100:G:C	rs2185961	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr13	53327974	53327975	chr13:53327975:A:G	rs9536394	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr13	53356675	53356676	chr13:53356676:T:C	rs1373271	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.206664056294722	1.4056368943777167	TCAATTACATTTA
chr13	55389794	55389795	chr13:55389795:A:G	rs3105043	A	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr13	55425071	55425072	chr13:55425072:A:G	rs2937338	A	G	G	Sox1.mouse_HMG_3	12	1	-	5.281526031045548	5.195749169298846	TCAATGACAATGT
chr13	56860459	56860460	chr13:56860460:G:C	rs7333137	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	57129186	57129187	chr13:57129187:G:A	rs12428352	G	A	G	Sox1.mouse_HMG_3	9	1	+	4.700076471124824	1.5812420004368488	ACAATGACAGTGG
chr13	57450524	57450525	chr13:57450525:G:A	rs2167070	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr13	58171997	58171998	chr13:58171998:C:T	rs17190418	C	T	C	Sox1.mouse_HMG_3	3	1	+	6.743563186916077	2.106700554195497	TCACTTCTATTGC
chr13	58567031	58567032	chr13:58567032:G:A	rs78852312	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr13	58593063	58593064	chr13:58593064:C:A	rs76729992	C	A	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr13	58594896	58594897	chr13:58594897:C:A	rs76172775	C	A	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr13	58802271	58802272	chr13:58802272:A:G	rs9538215	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.871817586953199	-2.036937192362021	ACAATGACATTTA
chr13	59127697	59127698	chr13:59127698:C:T	rs74084015	C	T	C	Sox1.mouse_HMG_3	11	1	-	6.083693778361761	1.9738533473758624	ACAATTACAGTGT
chr13	59285805	59285806	chr13:59285806:C:T	rs9591978	C	T	C	Sox1.mouse_HMG_3	11	1	-	7.492013753936808	3.3821733229509103	TTACTTGCATTGA
chr13	59394954	59394955	chr13:59394955:A:G	rs9538402	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr13	59585906	59585907	chr13:59585907:A:G	rs595315	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr13	59585930	59585931	chr13:59585931:G:A	rs506806	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr13	59602117	59602118	chr13:59602118:A:G	rs474813	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.894113384565893	2.0930862226488887	TCAATAATATTGG
chr13	59914687	59914688	chr13:59914688:T:G	rs144524763	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr13	60766615	60766616	chr13:60766616:T:C	rs1399141	T	C	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr13	61149274	61149275	chr13:61149275:G:A	rs9563888	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr13	61149324	61149325	chr13:61149325:G:A	rs9539048	G	A	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr13	61675618	61675619	chr13:61675619:C:T	rs9598336	C	T	C	Sox1.mouse_HMG_3	11	1	-	12.027117392097223	7.917276961111325	TCAATTTCATTGC
chr13	61679571	61679572	chr13:61679572:G:A	rs4886360	G	A	G	Sox1.mouse_HMG_3	10	1	-	6.6433491030802845	11.278561898884897	TCAATCACATCGA
chr13	62278536	62278537	chr13:62278537:A:G	rs423678	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr13	62357881	62357882	chr13:62357882:A:C	rs309091	A	C	c	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr13	62484187	62484188	chr13:62484188:G:C	rs7981934	G	C	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr13	62684899	62684900	chr13:62684900:A:C	rs7983178	A	C	C	Sox1.mouse_HMG_3	2	1	+	4.511361540401474	-2.3973932389137462	TCACTGCCATTCG
chr13	62798774	62798775	chr13:62798775:C:T	rs9570737	C	T	-	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr13	62909841	62909842	chr13:62909842:A:G	rs115154874	A	G	A	Sox1.mouse_HMG_3	11	1	+	11.140077763011384	15.249918193997281	TCAATATCATTAA
chr13	63615478	63615479	chr13:63615479:G:A	rs2637567	G	A	A	Sox1.mouse_HMG_3	3	1	-	4.543387204756453	-0.093475427964127	TCACTGGCATTAG
chr13	63848805	63848806	chr13:63848806:G:C	rs536914	G	C	.	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr13	64063722	64063723	chr13:64063723:C:A	rs147087705	C	A	C	Sox1.mouse_HMG_3	11	1	-	5.837282027955107	-1.0470203696522518	TCAAAACAATTGA
chr13	64317064	64317065	chr13:64317065:T:C	rs11148643	T	C	C	Sox1.mouse_HMG_3	6	1	-	5.284133141238696	4.807617201583474	TCAATGACATTTT
chr13	64705429	64705430	chr13:64705430:A:C	rs7982287	A	C	C	Sox1.mouse_HMG_3	9	1	-	5.1609225557570735	1.39284751864454	TCATTATCATTGG
chr13	65226032	65226033	chr13:65226033:C:T	rs7986547	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr13	65959757	65959758	chr13:65959758:T:C	rs10492541	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.152503603225037	1.2437488239098162	TCAATTCCACTGA
chr13	66181491	66181492	chr13:66181492:T:C	rs73499935	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr13	66345938	66345939	chr13:66345939:T:C	rs115137660	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr13	66412715	66412716	chr13:66412716:G:A	rs9540740	G	A	g	Sox1.mouse_HMG_3	1	1	-	7.0601438104527965	2.101871579339171	ACACTAGCATTGG
chr13	66464259	66464260	chr13:66464260:C:T	rs1470370	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr13	66673746	66673747	chr13:66673747:T:C	rs9317600	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr13	66755782	66755783	chr13:66755783:T:G	rs9571646	T	G	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr13	66993802	66993803	chr13:66993803:C:T	rs17791025	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr13	67369983	67369984	chr13:67369984:C:T	rs17082433	C	T	C	Sox1.mouse_HMG_3	6	1	+	6.989773145107579	6.476695329997108	TCACTACCATTAC
chr13	67792444	67792445	chr13:67792445:A:T	rs8000229	A	T	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr13	68012448	68012449	chr13:68012449:T:C	rs962412844	T	C	T	Sox1.mouse_HMG_3	10	1	+	6.615179465870623	1.9799666700660095	TCACTCACATTGC
chr13	68923233	68923234	chr13:68923234:G:A	rs9592579	G	A	g	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr13	69095008	69095009	chr13:69095009:C:T	rs9572092	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr13	69110284	69110285	chr13:69110285:G:A	rs28558878	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr13	69474536	69474537	chr13:69474537:G:A	rs963570229	G	A	G	Sox1.mouse_HMG_3	7	1	-	3.7658961999995735	0.13342870890438108	TCCCTAGCATTGC
chr13	70042905	70042906	chr13:70042906:G:C	rs79303832	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr13	70090030	70090031	chr13:70090031:T:A	rs9572362	T	A	T	Sox1.mouse_HMG_3	5	1	-	12.130528518012557	11.40694561993035	TCAATACTATTGA
chr13	70424916	70424917	chr13:70424917:A:G	rs9599663	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr13	70534744	70534745	chr13:70534745:A:G	rs9542369	A	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr13	70755733	70755734	chr13:70755734:C:T	rs73511988	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr13	71052462	71052463	chr13:71052463:A:G	rs9572631	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr13	71210488	71210489	chr13:71210489:A:G	rs9572687	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.25904235498469	1.4580151930676863	TCAATTTCAGTGC
chr13	71219024	71219025	chr13:71219025:T:C	rs2875605	T	C	C	Sox1.mouse_HMG_3	2	1	-	5.714040391616084	-1.194714387699135	TTACTATCATTGT
chr13	71521016	71521017	chr13:71521017:A:G	rs35257173	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr13	71789889	71789890	chr13:71789890:C:A	rs748676	C	A	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr13	72151574	72151575	chr13:72151575:T:G	rs585032	T	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr13	72352376	72352377	chr13:72352377:A:G	rs547638	A	G	a	Sox1.mouse_HMG_3	10	1	-	6.273772861517994	1.6385600657133808	TCACCAGCATTGA
chr13	72410574	72410575	chr13:72410575:G:A	rs17089337	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr13	72471763	72471764	chr13:72471764:T:C	rs9542962	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr13	72653276	72653277	chr13:72653277:A:T	rs67827423	A	T	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr13	72969567	72969568	chr13:72969568:G:A	rs117981701	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr13	73138036	73138037	chr13:73138037:C:T	rs12873808	C	T	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr13	73198683	73198684	chr13:73198684:G:A	rs61966315	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.212479823069666	5.68899576272489	TAAATTGCATTGC
chr13	73245309	73245310	chr13:73245310:C:T	rs9543290	C	T	c	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr13	73245312	73245313	chr13:73245313:A:T	rs73224421	A	T	A	Sox1.mouse_HMG_3	1	1	+	5.362457070186094	7.306937626431813	AAAATTACATTGA
chr13	73366588	73366589	chr13:73366589:C:G	rs9318170	C	G	G	Sox1.mouse_HMG_3	11	1	-	3.8423674388064835	-0.7244612533130801	TCAATGTCACTGG
chr13	73618669	73618670	chr13:73618670:A:G	rs138426676	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr13	73708483	73708484	chr13:73708484:G:T	rs150823534	G	T	G	Sox1.mouse_HMG_3	1	1	-	4.869210476760051	-2.033542310599294	ACAATGACACTGA
chr13	73803307	73803308	chr13:73803308:C:T	rs879800	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr13	73851090	73851091	chr13:73851091:G:T	rs9543476	G	T	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr13	74172044	74172045	chr13:74172045:T:C	rs7990716	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.028484633435889	-0.8584248743646188	ACTATACCATTGA
chr13	74246837	74246838	chr13:74246838:C:T	rs12429553	C	T	C	Sox1.mouse_HMG_3	11	1	-	3.901793454607447	-0.20804697637845093	TCATTAGCATCGA
chr13	74630034	74630035	chr13:74630035:G:A	rs1359690	G	A	G	Sox1.mouse_HMG_3	7	1	-	8.6922709227557	5.0598034316605105	ACAATGTCATTGC
chr13	74811168	74811169	chr13:74811169:C:A	rs4307837	C	A	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr13	74907839	74907840	chr13:74907840:G:A	rs1258992620	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr13	75199270	75199271	chr13:75199271:T:G	rs17063940	T	G	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr13	75425550	75425551	chr13:75425551:G:A	rs12876647	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr13	75495543	75495544	chr13:75495544:T:C	rs75697026	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr13	75684933	75684934	chr13:75684934:T:C	rs9530460	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr13	75684981	75684982	chr13:75684982:A:G	rs9530461	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.69738795812891	-2.103639203788096	TCTATGGCATTGC
chr13	75777149	75777150	chr13:75777150:A:G	rs474240	A	G	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr13	75780154	75780155	chr13:75780155:G:A	rs9573659	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	76117482	76117483	chr13:76117483:C:T	rs1590910	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr13	76129749	76129750	chr13:76129750:A:G	rs4885385	A	G	G	Sox1.mouse_HMG_3	5	1	+	5.358115001703226	4.125442230636137	ACAATATCATTCC
chr13	76473789	76473790	chr13:76473790:A:T	rs17066258	A	T	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr13	76730555	76730556	chr13:76730556:C:A	rs997632	C	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr13	76787580	76787581	chr13:76787581:C:T	rs76842352	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr13	76787617	76787618	chr13:76787618:A:G	rs8000613	A	G	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	76849105	76849106	chr13:76849106:T:C	rs73542617	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr13	76856475	76856476	chr13:76856476:A:T	rs7990649	A	T	T	Sox1.mouse_HMG_3	10	1	-	4.525454876006652	-2.3746411456079963	TCATTTGCATTGG
chr13	76948789	76948790	chr13:76948790:T:C	rs588702	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr13	77329254	77329255	chr13:77329255:T:G	rs1999019	T	G	t	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr13	77329256	77329257	chr13:77329257:A:G	rs1999018	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	77330025	77330026	chr13:77330026:G:A	rs115736965	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr13	77613710	77613711	chr13:77613711:A:G	rs4595685	A	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr13	77836926	77836927	chr13:77836927:T:A	rs9318501	T	A	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr13	77836936	77836937	chr13:77836937:T:A	rs9565370	T	A	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr13	78146047	78146048	chr13:78146048:T:C	rs1408612	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr13	78239442	78239443	chr13:78239443:G:A	rs9318531	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr13	78535209	78535210	chr13:78535210:G:A	rs9601075	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr13	78562559	78562560	chr13:78562560:A:T	rs1952096	A	T	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr13	78849152	78849153	chr13:78849153:C:T	rs7986745	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr13	79424076	79424077	chr13:79424077:G:T	rs961968515	G	T	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr13	79714609	79714610	chr13:79714610:G:T	rs2802629	G	T	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr13	79851156	79851157	chr13:79851157:G:C	rs7337191	G	C	C	Sox1.mouse_HMG_3	1	1	-	12.213656514668902	5.310903727309556	ACAATTCCATTGA
chr13	80049210	80049211	chr13:80049211:A:C	rs7981942	A	C	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr13	80191680	80191681	chr13:80191681:G:C	rs518627	G	C	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr13	80359488	80359489	chr13:80359489:C:T	rs17072634	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr13	80523242	80523243	chr13:80523243:A:G	rs9545456	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr13	80563220	80563221	chr13:80563221:G:T	rs1539716	G	T	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr13	80613014	80613015	chr13:80613015:C:A	rs9574697	C	A	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr13	80755681	80755682	chr13:80755682:C:T	rs2794249	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr13	81343393	81343394	chr13:81343394:G:C	rs1146983	G	C	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr13	81771146	81771147	chr13:81771147:A:G	rs73246713	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.605918458013345	-2.3028363213018745	TCATTTCTATTGA
chr13	81783888	81783889	chr13:81783889:C:A	rs446371	C	A	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr13	82002736	82002737	chr13:82002737:T:A	rs4606596	T	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	82002769	82002770	chr13:82002770:T:C	rs182432353	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr13	82008385	82008386	chr13:82008386:A:G	rs9318830	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr13	82076569	82076570	chr13:82076570:A:G	rs9531289	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr13	83200330	83200331	chr13:83200331:T:C	rs2669246	T	C	C	Sox1.mouse_HMG_3	10	1	+	10.773074883554683	6.1378620877500705	ACACTACCATTGA
chr13	83397295	83397296	chr13:83397296:A:C	rs9546370	A	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr13	83950788	83950789	chr13:83950789:T:G	rs9565906	T	G	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr13	84032286	84032287	chr13:84032287:G:A	rs7992606	G	A	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr13	84130135	84130136	chr13:84130136:T:C	rs7989783	T	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	84130150	84130151	chr13:84130151:G:A	rs4378519	G	A	g	Sox1.mouse_HMG_3	3	1	-	5.479249201043732	0.8423865683231504	TCACTGCCAATGA
chr13	84207330	84207331	chr13:84207331:C:G	rs2774062	C	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr13	84492167	84492168	chr13:84492168:G:A	rs9575590	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr13	84553169	84553170	chr13:84553170:A:C	rs11618006	A	C	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr13	84946431	84946432	chr13:84946432:T:C	rs72632178	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr13	85379949	85379950	chr13:85379950:A:G	rs7990259	A	G	A	Sox1.mouse_HMG_3	5	1	-	15.09096645390208	11.278561898884897	TCAATTACATTGA
chr13	85798780	85798781	chr13:85798781:C:T	rs993170322	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr13	86014372	86014373	chr13:86014373:G:A	rs7333127	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr13	86846846	86846847	chr13:86846847:C:A	rs35082646	C	A	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr13	87379365	87379366	chr13:87379366:A:G	rs9584585	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.952984872119121	-1.9471111494955262	TCACTGTCATGGA
chr13	87390653	87390654	chr13:87390654:C:A	rs72639317	C	A	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr13	87827579	87827580	chr13:87827580:T:C	rs1017645686	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr13	88623479	88623480	chr13:88623480:C:T	rs6492230	C	T	c	Sox1.mouse_HMG_3	1	1	+	3.4759346563966242	-1.482337574717002	TCACCTCCATTGC
chr13	88733568	88733569	chr13:88733569:G:A	rs9301486	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr13	89206316	89206317	chr13:89206317:G:C	rs393546	G	C	C	Sox1.mouse_HMG_3	1	1	-	5.356455078230219	-1.5462977091291257	ACTATTACATTGA
chr13	89622392	89622393	chr13:89622393:A:G	rs1327339	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	90281790	90281791	chr13:90281791:A:G	rs12866611	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr13	90282029	90282030	chr13:90282030:G:A	rs9522905	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr13	90316848	90316849	chr13:90316849:C:A	rs1325333	C	A	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr13	90768809	90768810	chr13:90768810:G:C	rs7328899	G	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr13	91240419	91240420	chr13:91240420:T:C	rs9523276	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr13	92029313	92029314	chr13:92029314:T:C	rs35021705	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr13	92101948	92101949	chr13:92101949:T:C	rs34989853	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr13	92187592	92187593	chr13:92187593:C:T	rs188480640	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr13	92187604	92187605	chr13:92187605:A:G	rs371707594	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.872811159543058	-2.0359436197721617	TCACTGTCATTCT
chr13	92187622	92187623	chr13:92187623:T:C	rs114030273	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr13	92224253	92224254	chr13:92224254:C:T	rs72636840	C	T	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr13	92413634	92413635	chr13:92413635:T:G	rs4773681	T	G	G	Sox1.mouse_HMG_3	2	1	-	6.690076700596107	-0.21867807871911338	TCACTACCCTTGA
chr13	92994426	92994427	chr13:92994427:A:G	rs72642676	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr13	93710046	93710047	chr13:93710047:T:C	rs4619265	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr13	94154698	94154699	chr13:94154699:A:T	rs685049	A	T	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr13	94305354	94305355	chr13:94305355:C:T	rs72647623	C	T	C	Sox1.mouse_HMG_3	7	1	+	9.013522190067285	5.3810546989720915	TCATTAACATTGA
chr13	94507177	94507178	chr13:94507178:G:A	rs2389134	G	A	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr13	94608166	94608167	chr13:94608167:T:C	rs9524556	T	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr13	94978602	94978603	chr13:94978603:A:T	rs9590150	A	T	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr13	95151293	95151294	chr13:95151294:G:A	rs55773053	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr13	95524653	95524654	chr13:95524654:T:C	rs141389199	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.894243198263659	-2.0058528233509882	TCAATTACCTTGG
chr13	96071519	96071520	chr13:96071520:G:A	rs536606	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr13	96223544	96223545	chr13:96223545:C:G	rs16951722	C	G	C	Sox1.mouse_HMG_3	3	1	+	6.265114103817423	1.6282514710968414	TCCCTAGCATTGA
chr13	96256173	96256174	chr13:96256174:G:A	rs9525172	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr13	96385334	96385335	chr13:96385335:A:G	rs9516673	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr13	96460667	96460668	chr13:96460668:C:T	rs1887602	C	T	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr13	96898704	96898705	chr13:96898705:G:T	rs9584426	G	T	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr13	97119499	97119500	chr13:97119500:T:G	rs113198898	T	G	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr13	97224583	97224584	chr13:97224584:C:T	rs55927664	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr13	97277425	97277426	chr13:97277426:C:T	rs2389823	C	T	C	Sox1.mouse_HMG_3	4	1	-	8.437937390714419	10.702820616524452	TCAAGAGCATTGA
chr13	98238801	98238802	chr13:98238802:G:T	rs2892898	G	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr13	98326580	98326581	chr13:98326581:T:C	rs10492708	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.0203618182400955	-1.8665476895604132	TCACTACAATTGG
chr13	98399258	98399259	chr13:98399259:T:C	rs4772071	T	C	C	Sox1.mouse_HMG_3	2	1	+	5.617826096345867	5.617826096345867	TCTATAACATTGG
chr13	98411989	98411990	chr13:98411990:T:C	rs11556829	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr13	98412909	98412910	chr13:98412910:G:A	rs7323690	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr13	98650929	98650930	chr13:98650930:A:G	rs980917085	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr13	98673800	98673801	chr13:98673801:T:C	rs1782675	T	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	98722235	98722236	chr13:98722236:A:C	rs72650311	A	C	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr13	98948129	98948130	chr13:98948130:C:T	rs964291888	C	T	C	Sox1.mouse_HMG_3	10	1	-	5.517616030106131	5.517616030106131	TCACTGACATGGA
chr13	98967854	98967855	chr13:98967855:C:G	rs1408717	C	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr13	98996163	98996164	chr13:98996164:T:C	rs912688	T	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr13	99198698	99198699	chr13:99198699:G:A	rs1042902686	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.8881032460207	6.364619185675924	TTAATTGCAGTGA
chr13	99218660	99218661	chr13:99218661:T:G	rs972862595	T	G	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr13	99229409	99229410	chr13:99229410:A:G	rs73565924	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr13	99352775	99352776	chr13:99352776:A:G	rs79199942	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.521864254872543	-2.3868905244426775	TCAGTTACAGTGA
chr13	99434024	99434025	chr13:99434025:T:A	rs11069363	T	A	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr13	99434044	99434045	chr13:99434045:C:T	rs183708480	C	T	C	Sox1.mouse_HMG_3	10	1	+	4.471960748911972	9.107173544716586	TCACTTCCAGCGA
chr13	99522511	99522512	chr13:99522512:G:A	rs2031423	G	A	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr13	99522548	99522549	chr13:99522549:C:T	rs150819343	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr13	99742072	99742073	chr13:99742073:A:G	rs1006818649	A	G	A	Sox1.mouse_HMG_3	12	1	+	5.563376477249927	2.2754080009267246	TCACTTGCAATGA
chr13	99807062	99807063	chr13:99807063:G:A	rs9557311	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr13	99886549	99886550	chr13:99886550:T:C	rs7981650	T	C	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr13	100298197	100298198	chr13:100298198:T:C	rs1000160	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr13	100705153	100705154	chr13:100705154:A:G	chr13:100705154:A:G	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr13	100801030	100801031	chr13:100801031:G:A	rs117294221	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	100805291	100805292	chr13:100805292:A:G	rs4771375	A	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr13	100808047	100808048	chr13:100808048:C:T	rs1570602	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr13	100981969	100981970	chr13:100981970:G:C	rs76941131	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr13	101154211	101154212	chr13:101154212:T:C	rs79787161	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr13	101514704	101514705	chr13:101514705:C:T	rs180710574	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	101517769	101517770	chr13:101517770:G:A	rs9284189	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr13	101649647	101649648	chr13:101649648:A:T	rs1036437	A	T	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr13	101757685	101757686	chr13:101757686:T:C	rs74324672	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.206477831113791	-1.6936181905008574	TCAATTGCCTTGC
chr13	101949782	101949783	chr13:101949783:T:G	rs727424	T	G	T	Sox1.mouse_HMG_3	6	1	+	6.147102048778326	6.2352172671101105	TCAATCTCATTCA
chr13	102034510	102034511	chr13:102034511:T:C	rs79913715	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr13	102036181	102036182	chr13:102036182:A:G	rs76726420	A	G	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr13	102199163	102199164	chr13:102199164:G:A	rs566197064	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr13	102276184	102276185	chr13:102276185:T:G	rs977899903	T	G	T	Sox1.mouse_HMG_3	8	1	-	6.403520451648614	-0.5052343276666074	TCACTTACATTAT
chr13	102287287	102287288	chr13:102287288:C:T	rs2184807	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr13	102664654	102664655	chr13:102664655:G:A	rs658483	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	102819427	102819428	chr13:102819428:G:A	rs9554899	G	A	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr13	102912744	102912745	chr13:102912745:A:G	rs8001540	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr13	103071371	103071372	chr13:103071372:G:A	rs7319981	G	A	A	Sox1.mouse_HMG_3	11	1	+	5.313516928842889	1.203676497856991	TCACTTTCATCGT
chr13	103658521	103658522	chr13:103658522:A:T	rs16962926	A	T	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr13	103935261	103935262	chr13:103935262:T:C	rs1336600	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr13	104016021	104016022	chr13:104016022:A:G	rs143499121	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr13	104132979	104132980	chr13:104132980:G:A	rs7332734	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr13	104357985	104357986	chr13:104357986:A:G	rs7330591	A	G	T	Sox1.mouse_HMG_3	8	1	+	9.013522190067285	2.1047674107520633	TCATTAACATTGA
chr13	104593044	104593045	chr13:104593045:C:T	rs9519399	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr13	104796657	104796658	chr13:104796658:C:T	rs9519470	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr13	104890467	104890468	chr13:104890468:T:C	rs187317984	T	C	T	Sox1.mouse_HMG_3	4	1	-	5.2317280092217775	2.966844783411743	TCACAGCCATTGC
chr13	104954355	104954356	chr13:104954356:A:G	rs115043767	A	G	a	Sox1.mouse_HMG_3	9	1	-	12.988792755627646	6.101883247827141	ACAATAACATTGA
chr13	105034832	105034833	chr13:105034833:C:T	rs74562607	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	105281349	105281350	chr13:105281350:T:C	rs7324140	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr13	105471769	105471770	chr13:105471770:A:G	rs548977399	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr13	105510132	105510133	chr13:105510133:C:A	rs7997927	C	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr13	105547958	105547959	chr13:105547959:A:G	rs9586886	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr13	105915555	105915556	chr13:105915556:C:T	rs35887690	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr13	105924979	105924980	chr13:105924980:G:A	rs12877779	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr13	105941042	105941043	chr13:105941043:T:C	rs17514375	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.581747135270101	-2.32700764404512	TCAACATCAGTGA
chr13	106295478	106295479	chr13:106295479:C:T	rs16968408	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr13	106587910	106587911	chr13:106587911:T:C	rs2391344	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr13	106587935	106587936	chr13:106587936:C:A	rs2391345	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr13	106663007	106663008	chr13:106663008:G:A	rs7991302	G	A	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr13	106797014	106797015	chr13:106797015:G:A	rs11069666	G	A	a	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr13	107271497	107271498	chr13:107271498:C:G	rs75312685	C	G	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr13	107586074	107586075	chr13:107586075:T:A	rs2391460	T	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr13	107625249	107625250	chr13:107625250:G:A	rs1924430	G	A	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr13	107941229	107941230	chr13:107941230:C:T	rs816986	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr13	108056507	108056508	chr13:108056508:C:G	rs111906567	C	G	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr13	108056510	108056511	chr13:108056511:G:A	rs12876800	G	A	G	Sox1.mouse_HMG_3	12	1	-	7.124386445985726	7.210163307732429	TTAATGACATTGC
chr13	108383954	108383955	chr13:108383955:T:C	rs7993859	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr13	108728377	108728378	chr13:108728378:A:C	rs10492418	A	C	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	108758584	108758585	chr13:108758585:T:C	rs4772995	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	108777760	108777761	chr13:108777761:T:A	rs144828559	T	A	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr13	108850667	108850668	chr13:108850668:A:T	rs7330740	A	T	A	Sox1.mouse_HMG_3	12	1	-	8.289379574453307	10.702820616524452	TCAAAAGCATTGT
chr13	109274614	109274615	chr13:109274615:T:C	rs75620906	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr13	109274620	109274621	chr13:109274621:G:A	rs75809506	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr13	109635861	109635862	chr13:109635862:T:G	rs757319255	T	G	T	Sox1.mouse_HMG_3	9	1	+	5.566272753469329	1.7981977163567966	TCTATACCATTGG
chr13	109731308	109731309	chr13:109731309:T:G	rs76447295	T	G	T	Sox1.mouse_HMG_3	4	1	+	5.310115195408503	-1.589980826206144	TCACTGCCAGTGG
chr13	109844527	109844528	chr13:109844528:A:G	rs7326614	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr13	110128739	110128740	chr13:110128740:A:G	rs7320138	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr13	110148359	110148360	chr13:110148360:T:C	rs77879875	T	C	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr13	110246522	110246523	chr13:110246523:T:C	rs614282	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.412610223235227	1.5257007154347213	ACAATTTCATTGG
chr13	110247618	110247619	chr13:110247619:A:G	rs76254194	A	G	A	Sox1.mouse_HMG_3	0	1	-	6.169510982189513	-0.6826681599037732	TTAAAACCATTGA
chr13	110304670	110304671	chr13:110304671:A:G	rs72655741	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.219028433987919	-2.667881073812589	TCTAAACCATTGA
chr13	110305251	110305252	chr13:110305252:A:C	rs80285502	A	C	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr13	110348191	110348192	chr13:110348192:T:C	rs11840326	T	C	C	Sox1.mouse_HMG_3	9	1	+	4.8751495161281415	-2.0117599916723656	TCACTGGCATTCC
chr13	110577009	110577010	chr13:110577010:T:C	rs7985063	T	C	t	Sox1.mouse_HMG_3	3	1	-	5.863790782378926	-0.9372363795380807	TCAATATCAATGC
chr13	110583381	110583382	chr13:110583382:C:T	rs9521849	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.298256684816369	1.1884162538304706	TGAATTGCATTGT
chr13	110645534	110645535	chr13:110645535:C:T	rs116919485	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr13	110662556	110662557	chr13:110662557:C:T	rs1853861	C	T	T	Sox1.mouse_HMG_3	11	1	-	6.5124967922308485	2.402656361244951	TCAATTAAATTGG
chr13	110956478	110956479	chr13:110956479:C:T	rs9522015	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr13	111127038	111127039	chr13:111127039:A:G	rs73633230	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr13	111228730	111228731	chr13:111228731:A:C	rs115289909	A	C	A	Sox1.mouse_HMG_3	2	1	+	4.95674265955952	-1.952012119755698	ACACAGACATTGA
chr13	111311573	111311574	chr13:111311574:G:C	rs4773348	G	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr13	111341867	111341868	chr13:111341868:G:A	rs2250707	G	A	g	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr13	111561765	111561766	chr13:111561766:G:A	rs7321593	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr13	111636391	111636392	chr13:111636392:T:G	rs7338987	T	G	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr13	111909525	111909526	chr13:111909526:C:T	rs35551720	C	T	c	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr13	111958705	111958706	chr13:111958706:G:T	rs6577020	G	T	G	Sox1.mouse_HMG_3	6	1	-	5.208127416654298	5.259680759530836	TCTATGCCATTGT
chr13	112012049	112012050	chr13:112012050:T:C	rs1277778	T	C	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr13	112435650	112435651	chr13:112435651:C:T	rs9549520	C	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr13	112589484	112589485	chr13:112589485:T:A	rs11164167	T	A	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr13	112751001	112751002	chr13:112751002:G:C	rs383426	G	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr13	112835504	112835505	chr13:112835505:G:A	rs9549568	G	A	g	Sox1.mouse_HMG_3	8	1	+	5.457403929529018	12.366158708844239	TCACTGCCGTTGA
chr13	112946608	112946609	chr13:112946609:T:C	rs12864060	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.847365205245339	-1.953661956671667	ACAATGACCTTGA
chr13	113074776	113074777	chr13:113074777:G:T	rs35463691	G	T	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr13	113152095	113152096	chr13:113152096:G:A	rs906279867	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr13	113549107	113549108	chr13:113549108:C:T	rs74116212	C	T	.	Sox1.mouse_HMG_3	9	1	-	4.581747135270101	1.4629126645821262	TCAAGATCAGTGA
chr13	113562439	113562440	chr13:113562440:G:C	rs7325665	G	C	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr13	113563079	113563080	chr13:113563080:G:C	rs7331586	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr13	113969296	113969297	chr13:113969297:T:C	rs901124710	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr13	113969310	113969311	chr13:113969311:T:C	rs1052544322	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr13	114219407	114219408	chr13:114219408:A:G	rs7998976	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr13	114220817	114220818	chr13:114220818:T:C	rs75093421	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr14	16097487	16097488	chr14:16097488:A:G	rs925128271	A	G	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr14	16097501	16097502	chr14:16097502:A:G	rs1389983240	A	G	.	Sox1.mouse_HMG_3	2	1	+	7.973366515088131	1.0646117357729126	TCAATTCCATTCC
chr14	16097982	16097983	chr14:16097983:A:C	rs1212023664	A	C	.	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr14	16098649	16098650	chr14:16098650:C:T	rs1051258091	C	T	.	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr14	16098685	16098686	chr14:16098686:A:G	rs1033182279	A	G	.	Sox1.mouse_HMG_3	8	1	+	7.973366515088131	1.0646117357729117	TCAATTCCATTCC
chr14	16098706	16098707	chr14:16098707:C:T	rs921120653	C	T	.	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr14	16098719	16098720	chr14:16098720:C:T	chr14:16098720:C:T	C	T	.	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	16098857	16098858	chr14:16098858:C:G	rs912402354	C	G	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr14	16099195	16099196	chr14:16099196:A:G	chr14:16099196:A:G	A	G	.	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr14	16099384	16099385	chr14:16099385:A:C	rs888853699	A	C	.	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	16099782	16099783	chr14:16099783:T:C	rs979804268	T	C	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr14	16099838	16099839	chr14:16099839:A:C	rs1010105979	A	C	.	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr14	16100530	16100531	chr14:16100531:T:A	rs1376263444	T	A	.	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr14	16101153	16101154	chr14:16101154:C:T	rs1334121190	C	T	.	Sox1.mouse_HMG_3	7	1	+	7.973366515088131	4.340899023992938	TCAATTCCATTCC
chr14	16103001	16103002	chr14:16103002:A:T	chr14:16103002:A:T	A	T	.	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr14	16103020	16103021	chr14:16103021:C:G	rs1163173412	C	G	.	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr14	16103919	16103920	chr14:16103920:A:G	chr14:16103920:A:G	A	G	.	Sox1.mouse_HMG_3	8	1	+	7.973366515088131	1.0646117357729117	TCAATTCCATTCC
chr14	19902584	19902585	chr14:19902585:T:A	rs1617258	T	A	N	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	20456274	20456275	chr14:20456275:T:C	rs3136817	T	C	T	Sox1.mouse_HMG_3	5	1	+	10.37603067801127	6.563626122994085	TCACTTCCATTGC
chr14	20572374	20572375	chr14:20572375:T:C	rs35504231	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr14	20987932	20987933	chr14:20987933:C:A	rs2741729	C	A	C	Sox1.mouse_HMG_3	5	1	+	9.062844026811934	13.598831479911325	TCACTCCCATTGA
chr14	21049265	21049266	chr14:21049266:T:G	rs1958394	T	G	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr14	21585550	21585551	chr14:21585551:A:C	rs6571922	A	C	c	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr14	21652268	21652269	chr14:21652269:A:G	rs10147663	A	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr14	21847113	21847114	chr14:21847114:C:T	rs2075489	C	T	c	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr14	21915951	21915952	chr14:21915952:C:T	rs10142709	C	T	c	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr14	21978246	21978247	chr14:21978247:T:A	rs74035449	T	A	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr14	21979007	21979008	chr14:21979008:G:A	rs2075484	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr14	21979010	21979011	chr14:21979011:A:G	rs2075485	A	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	22495896	22495897	chr14:22495897:A:C	rs226986	A	C	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr14	22561096	22561097	chr14:22561097:C:T	rs115645701	C	T	t	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr14	22569710	22569711	chr14:22569711:G:A	rs5742838	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr14	22776464	22776465	chr14:22776465:C:A	rs17277865	C	A	.	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr14	22801890	22801891	chr14:22801891:A:G	rs2331772	A	G	G	Sox1.mouse_HMG_3	3	1	+	5.488827043630177	-1.3122001182868288	ACAATGACAGTGC
chr14	23251245	23251246	chr14:23251246:C:G	rs72684368	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr14	23775489	23775490	chr14:23775490:A:G	rs976222	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr14	23775496	23775497	chr14:23775497:A:C	rs976221	A	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr14	23799725	23799726	chr14:23799726:G:A	rs1044998210	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr14	23987766	23987767	chr14:23987767:G:A	rs56171184	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	24693438	24693439	chr14:24693439:C:T	rs1951590	C	T	T	Sox1.mouse_HMG_3	11	1	-	6.034486625391764	1.9246461944058657	AAAATACCATTGA
chr14	24693455	24693456	chr14:24693456:C:T	rs10873238	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	24706775	24706776	chr14:24706776:C:T	rs74875195	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr14	24725363	24725364	chr14:24725364:T:C	rs206226	T	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr14	24768613	24768614	chr14:24768614:C:A	rs186044969	C	A	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	24908591	24908592	chr14:24908592:A:G	rs12883258	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.869397287456346	-0.9316298744606581	TCAATTGCATCAA
chr14	25042473	25042474	chr14:25042474:G:A	rs11626436	G	A	A	Sox1.mouse_HMG_3	6	1	+	8.453731014721706	8.930246954376932	TCAATAGCATTTA
chr14	25291657	25291658	chr14:25291658:A:T	rs1461537	A	T	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr14	26422702	26422703	chr14:26422703:G:A	rs61988519	G	A	A	Sox1.mouse_HMG_3	11	1	+	7.621568458725443	3.5117280277395455	TCAATGCCCTTGA
chr14	26523513	26523514	chr14:26523514:C:T	rs73601914	C	T	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr14	26594586	26594587	chr14:26594587:G:C	rs12588828	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr14	26594860	26594861	chr14:26594861:A:C	rs1950409	A	C	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr14	26595699	26595700	chr14:26595700:A:G	rs17111434	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr14	26776362	26776363	chr14:26776363:G:A	rs763794	G	A	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	26802117	26802118	chr14:26802118:G:A	rs3950060	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr14	26841956	26841957	chr14:26841957:C:G	rs1956818	C	G	C	Sox1.mouse_HMG_3	1	1	+	5.73916804529069	-1.1635847420686536	TCATTTCCATTGC
chr14	26867448	26867449	chr14:26867449:T:C	rs17111854	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr14	26947487	26947488	chr14:26947488:T:G	rs73609763	T	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr14	26967169	26967170	chr14:26967170:C:G	chr14:26967170:C:G	C	G	C	Sox1.mouse_HMG_3	1	1	+	7.550053503849954	0.6473007164906099	TCAATGCCATTCT
chr14	26996133	26996134	chr14:26996134:A:G	rs12432293	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.014058140623293	-1.8946966386919273	ACAAAACCATTGG
chr14	27784278	27784279	chr14:27784279:A:T	rs61974426	A	T	a	Sox1.mouse_HMG_3	4	1	-	6.700956327617327	2.065743531812713	TCACTCACATTGT
chr14	28129745	28129746	chr14:28129746:C:G	rs1191379	C	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr14	28672818	28672819	chr14:28672819:G:A	rs1229877190	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr14	28672821	28672822	chr14:28672822:T:C	rs72667879	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr14	28693625	28693626	chr14:28693626:A:G	rs176264	A	G	A	Sox1.mouse_HMG_3	2	1	+	9.304771921655917	2.396017142340696	ACAATACTATTGA
chr14	28783552	28783553	chr14:28783553:A:G	rs952829086	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	29030484	29030485	chr14:29030485:C:G	rs17114423	C	G	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr14	30180569	30180570	chr14:30180570:G:A	rs1033706	G	A	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	30775283	30775284	chr14:30775284:G:A	rs7160558	G	A	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr14	31264308	31264309	chr14:31264309:T:G	rs116495789	T	G	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr14	31458318	31458319	chr14:31458319:G:A	rs145449343	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr14	31510225	31510226	chr14:31510226:A:G	rs28369136	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr14	31696256	31696257	chr14:31696257:G:C	rs12878072	G	C	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr14	31902305	31902306	chr14:31902306:G:C	rs7140703	G	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr14	31936461	31936462	chr14:31936462:G:A	rs2027098	G	A	A	Sox1.mouse_HMG_3	2	1	+	5.717217289639178	12.625972068954397	TCGATTCCATTGT
chr14	31965829	31965830	chr14:31965830:A:G	rs73266821	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr14	32256555	32256556	chr14:32256556:G:A	rs74966288	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr14	32557681	32557682	chr14:32557682:C:T	rs17099273	C	T	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr14	32822278	32822279	chr14:32822279:G:A	rs150110782	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr14	33150859	33150860	chr14:33150860:C:T	rs17100249	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr14	33257230	33257231	chr14:33257231:G:C	rs243297	G	C	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr14	33309365	33309366	chr14:33309366:C:T	rs1279473	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr14	33510483	33510484	chr14:33510484:G:A	rs111362667	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	33510512	33510513	chr14:33510513:C:G	rs1885261	C	G	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr14	33686476	33686477	chr14:33686477:A:G	rs12587926	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	33686491	33686492	chr14:33686492:A:G	rs944088	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr14	33693153	33693154	chr14:33693154:T:C	rs10131958	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr14	33769160	33769161	chr14:33769161:T:C	rs733315	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr14	33943329	33943330	chr14:33943330:G:A	rs76833641	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr14	34018677	34018678	chr14:34018678:G:A	rs77422936	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr14	34047614	34047615	chr14:34047615:C:A	rs797376	C	A	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr14	34098466	34098467	chr14:34098467:T:C	rs8009878	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr14	34372492	34372493	chr14:34372493:C:G	rs12891015	C	G	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr14	34372515	34372516	chr14:34372516:G:A	rs17102460	G	A	G	Sox1.mouse_HMG_3	5	1	-	4.001018797312669	7.813423352329854	TCATTCGCATTGA
chr14	34687804	34687805	chr14:34687805:A:T	rs58753655	A	T	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr14	34688060	34688061	chr14:34688061:T:G	rs11156854	T	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr14	34702011	34702012	chr14:34702012:G:A	rs12883300	G	A	G	Sox1.mouse_HMG_3	7	1	-	6.514304286249436	2.8818367951542423	TCAGTAACATTGC
chr14	34702016	34702017	chr14:34702017:T:C	rs76240393	T	C	T	Sox1.mouse_HMG_3	2	1	-	6.514304286249436	-0.3944504930657844	TCAGTAACATTGC
chr14	34712579	34712580	chr14:34712580:T:C	rs9789	T	C	T	Sox1.mouse_HMG_3	5	1	+	5.878148086829897	2.065743531812713	TCACATACATTGT
chr14	34843065	34843066	chr14:34843066:A:G	rs60007157	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr14	35197254	35197255	chr14:35197255:C:G	rs4981273	C	G	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr14	35339236	35339237	chr14:35339237:T:G	rs8010567	T	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr14	35392189	35392190	chr14:35392190:T:C	rs61988302	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr14	36014449	36014450	chr14:36014450:C:T	rs2145800	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr14	36014450	36014451	chr14:36014451:C:G	rs2145799	C	G	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr14	36066758	36066759	chr14:36066759:T:A	rs11156901	T	A	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr14	36302977	36302978	chr14:36302978:C:A	rs7140630	C	A	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr14	37466585	37466586	chr14:37466586:G:A	rs10134469	G	A	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr14	37597342	37597343	chr14:37597343:C:T	rs2181180	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr14	37597369	37597370	chr14:37597370:A:G	rs12587630	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	37796868	37796869	chr14:37796869:C:T	rs9805910	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr14	37887847	37887848	chr14:37887848:G:A	rs143935351	G	A	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr14	38089347	38089348	chr14:38089348:T:G	rs2415428	T	G	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr14	38127782	38127783	chr14:38127783:G:A	rs2415447	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.086166192679999	0.12789396156637278	TCCATACCAGTGA
chr14	38174911	38174912	chr14:38174912:C:T	rs4310770	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr14	38723437	38723438	chr14:38723438:G:A	rs59566391	G	A	G	Sox1.mouse_HMG_3	1	1	-	4.700076471124824	-0.2581957599888036	ACAATGACAGTGG
chr14	39090839	39090840	chr14:39090840:T:A	rs10134166	T	A	T	Sox1.mouse_HMG_3	0	1	+	5.208127416654298	2.382370820297655	TCAATGCCCTTGT
chr14	39113490	39113491	chr14:39113491:G:C	rs2415533	G	C	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr14	39204143	39204144	chr14:39204144:T:C	rs72673365	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr14	39390957	39390958	chr14:39390958:A:G	rs73283442	A	G	A	Sox1.mouse_HMG_3	0	1	+	6.755723333567431	2.729300787830788	ACAATACCAGTGT
chr14	39390984	39390985	chr14:39390985:C:T	rs34173090	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr14	39880492	39880493	chr14:39880493:G:A	rs8007174	G	A	A	Sox1.mouse_HMG_3	9	1	+	5.143721527512412	2.0248870568244373	TAAATAACAGTGA
chr14	40055300	40055301	chr14:40055301:C:G	rs17110201	C	G	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	40055300	40055301	chr14:40055301:C:T	chr14:40055301:C:T	C	T	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	40318295	40318296	chr14:40318296:G:A	rs1546937	G	A	A	Sox1.mouse_HMG_3	3	1	-	9.353862989915918	4.717000357195339	TCACTGTCATTGC
chr14	40870602	40870603	chr14:40870603:A:G	rs10150841	A	G	G	Sox1.mouse_HMG_3	10	1	+	5.777429390216287	5.777429390216287	TCAATTACATAGT
chr14	40870613	40870614	chr14:40870614:T:G	rs12897166	T	G	t	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr14	41301319	41301320	chr14:41301320:G:A	rs2802067	G	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr14	41742812	41742813	chr14:41742813:G:A	rs58922111	G	A	A	Sox1.mouse_HMG_3	9	1	-	4.240873705502631	11.127783213303138	TCAAAACCACTGA
chr14	41872731	41872732	chr14:41872732:C:T	rs56176025	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr14	42508325	42508326	chr14:42508326:A:G	rs61992751	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr14	42560494	42560495	chr14:42560495:C:T	rs73328722	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr14	42569263	42569264	chr14:42569264:G:C	rs12898123	G	C	G	Sox1.mouse_HMG_3	1	1	-	6.4494589454219575	-0.45329384193738576	TCAAGACCATTGT
chr14	43153548	43153549	chr14:43153549:T:C	rs1899147	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.341163414682061	1.5401362527650553	TCAATATCTTTGA
chr14	44405245	44405246	chr14:44405246:A:T	rs17627207	A	T	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr14	44433580	44433581	chr14:44433581:C:T	rs1958512	C	T	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	44532472	44532473	chr14:44532473:T:C	rs2152497	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr14	44654866	44654867	chr14:44654867:A:G	rs117115682	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.898521148086148	-1.0102336312290718	GCAATATCATTGC
chr14	44702141	44702142	chr14:44702142:C:A	rs17551760	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr14	45519537	45519538	chr14:45519538:C:T	rs61997870	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr14	45869051	45869052	chr14:45869052:G:T	rs393652	G	T	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr14	46490644	46490645	chr14:46490645:T:C	rs28636061	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr14	46490656	46490657	chr14:46490657:T:G	rs2642106	T	G	G	Sox1.mouse_HMG_3	3	1	-	7.932503662445898	5.768339133249473	ACAATTTCAGTGA
chr14	46661827	46661828	chr14:46661828:G:A	rs80351721	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr14	47291407	47291408	chr14:47291408:A:G	rs75460422	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr14	47365090	47365091	chr14:47365091:A:G	rs8006114	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.374829413915075	-2.5120800938854324	CCAATCCCATTGA
chr14	47442152	47442153	chr14:47442153:G:A	chr14:47442153:G:A	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr14	47865775	47865776	chr14:47865776:G:A	rs1950761	G	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr14	47977335	47977336	chr14:47977336:C:G	rs804329	C	G	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr14	48008904	48008905	chr14:48008905:G:A	rs72679641	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr14	48289213	48289214	chr14:48289214:C:G	rs1620753	C	G	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr14	48289221	48289222	chr14:48289222:A:G	rs1769514	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr14	48289940	48289941	chr14:48289941:A:G	rs1769511	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	49058484	49058485	chr14:49058485:C:T	rs1956090	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr14	49251018	49251019	chr14:49251019:A:G	rs11846156	A	G	A	Sox1.mouse_HMG_3	9	1	+	3.6996262531825006	6.818460723870475	TCACTATCAATGC
chr14	49261172	49261173	chr14:49261173:A:G	rs4900898	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr14	49366858	49366859	chr14:49366859:A:T	rs55786414	A	T	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr14	49548708	49548709	chr14:49548709:G:C	rs183761304	G	C	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr14	49615767	49615768	chr14:49615768:A:T	rs112806337	A	T	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr14	49972495	49972496	chr14:49972496:C:T	rs527892327	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr14	49985520	49985521	chr14:49985521:A:G	rs12884799	A	G	A	Sox1.mouse_HMG_3	8	1	+	7.154622022730301	0.24586724341508082	TTAATTTCATTGT
chr14	49988368	49988369	chr14:49988369:T:C	rs2355654	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.532007081781716	-1.3767476975335051	ACAATAGCATTCT
chr14	50110591	50110592	chr14:50110592:A:G	rs1955929	A	G	G	Sox1.mouse_HMG_3	4	1	-	6.992352803948963	0.09225678233431522	TCACTAGCAGTGT
chr14	50378137	50378138	chr14:50378138:A:G	rs1890978	A	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr14	50754953	50754954	chr14:50754954:A:C	rs10132785	A	C	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr14	51042424	51042425	chr14:51042425:T:C	rs56312729	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	51157315	51157316	chr14:51157316:T:C	rs79268358	T	C	C	Sox1.mouse_HMG_3	9	1	+	8.567684980845037	1.6807754730445303	TCAATTACATTAT
chr14	51186267	51186268	chr14:51186268:C:G	rs2999387	C	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr14	51444456	51444457	chr14:51444457:T:G	rs7148299	T	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr14	51458204	51458205	chr14:51458205:C:T	rs12889345	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr14	51526018	51526019	chr14:51526019:T:G	rs8022389	T	G	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr14	51845747	51845748	chr14:51845748:A:T	rs11621466	A	T	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr14	51931555	51931556	chr14:51931556:T:G	rs1253698	T	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr14	51944224	51944225	chr14:51944225:A:G	rs8014732	A	G	G	Sox1.mouse_HMG_3	5	1	-	5.316707074568354	1.5043025195511688	TCAATTGCATTTT
chr14	51944242	51944243	chr14:51944243:A:G	rs8014746	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr14	52266933	52266934	chr14:52266934:C:T	rs33998702	C	T	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr14	52266980	52266981	chr14:52266981:C:T	rs803011	C	T	t	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr14	52577506	52577507	chr14:52577507:C:T	rs2357800	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr14	53020769	53020770	chr14:53020770:C:T	rs191278265	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.631440427892477	5.717217289639178	TCGATTCCATTGC
chr14	53054929	53054930	chr14:53054930:G:A	rs12880404	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr14	53065315	53065316	chr14:53065316:G:T	rs1572388	G	T	T	Sox1.mouse_HMG_3	1	1	-	5.793223014223576	-1.1095297731357676	TCAATTACATTTT
chr14	53634884	53634885	chr14:53634885:C:A	rs79449085	C	A	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr14	53736164	53736165	chr14:53736165:C:T	rs4901441	C	T	c	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr14	54084785	54084786	chr14:54084786:T:A	rs11621397	T	A	T	Sox1.mouse_HMG_3	4	1	+	7.158609964855891	2.5233971690512775	TTAATGCCATTGT
chr14	54312412	54312413	chr14:54312413:T:C	rs751148248	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr14	54441501	54441502	chr14:54441502:T:G	rs192720261	T	G	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	54671755	54671756	chr14:54671756:G:A	rs80235742	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	55005168	55005169	chr14:55005169:T:C	rs3783646	T	C	T	Sox1.mouse_HMG_3	0	1	+	4.340099048207852	-2.5120800938854324	TCAATCCCACTGA
chr14	55028480	55028481	chr14:55028481:A:T	rs1187876	A	T	A	Sox1.mouse_HMG_3	0	1	+	9.136193121317435	11.961949717674079	ACAATATCATTGG
chr14	55094734	55094735	chr14:55094735:C:T	rs78866519	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.527104712922618	0.4172642819367196	TCACTTGCATCGG
chr14	55127990	55127991	chr14:55127991:C:T	rs116264395	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr14	55152592	55152593	chr14:55152593:A:G	rs15870	A	G	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr14	55374758	55374759	chr14:55374759:G:A	rs8014477	G	A	A	Sox1.mouse_HMG_3	7	1	-	5.141310156690643	1.5088426655954525	TCAATAGCGTTGG
chr14	55483267	55483268	chr14:55483268:G:A	rs67254745	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	55625985	55625986	chr14:55625986:A:G	rs79262019	A	G	G	Sox1.mouse_HMG_3	3	1	+	4.3296120402766505	-2.471415121640355	TCAATTTCTTTGG
chr14	55626000	55626001	chr14:55626001:A:G	rs12895070	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	55848192	55848193	chr14:55848193:T:G	rs6573066	T	G	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr14	55893826	55893827	chr14:55893827:G:C	rs4898876	G	C	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr14	55893829	55893830	chr14:55893830:T:G	rs559444612	T	G	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr14	56244006	56244007	chr14:56244007:C:T	rs61311029	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr14	56273835	56273836	chr14:56273836:C:A	rs3783682	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr14	56417251	56417252	chr14:56417252:A:G	rs10132553	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr14	56525273	56525274	chr14:56525274:A:G	rs12897575	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.363008686196775	1.561981524279768	TCAATATCAATGA
chr14	56543601	56543602	chr14:56543602:G:C	rs10142042	G	C	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr14	56816564	56816565	chr14:56816565:C:T	rs198262	C	T	T	Sox1.mouse_HMG_3	8	1	-	5.508957272405556	12.417712051720777	TCACTGACGTTGA
chr14	56874566	56874567	chr14:56874567:T:A	rs8004898	T	A	T	Sox1.mouse_HMG_3	2	1	-	8.76589551410853	1.8571407347933087	TCAATAACATCGT
chr14	57512239	57512240	chr14:57512240:C:T	rs398723	C	T	T	Sox1.mouse_HMG_3	7	1	+	5.362457070186094	1.7299895790909015	AAAATTACATTGA
chr14	57747048	57747049	chr14:57747049:A:G	rs4423330	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	57945252	57945253	chr14:57945253:G:A	rs7145496	G	A	A	Sox1.mouse_HMG_3	6	1	-	5.165002676793142	4.651924861682671	ACAAATCCATTGT
chr14	57987225	57987226	chr14:57987226:A:C	rs17094108	A	C	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr14	58047155	58047156	chr14:58047156:C:T	rs8013464	C	T	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr14	58048792	58048793	chr14:58048793:T:C	rs10483694	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr14	58086180	58086181	chr14:58086181:T:C	rs12433262	T	C	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	58332399	58332400	chr14:58332400:A:G	rs10142973	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.127021370482577	-1.6740057914344282	TCAATTTCATAGC
chr14	58609490	58609491	chr14:58609491:G:A	rs61976265	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr14	58731774	58731775	chr14:58731775:A:C	rs2163616	A	C	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr14	58749828	58749829	chr14:58749829:G:A	rs188726	G	A	A	Sox1.mouse_HMG_3	7	1	-	4.42638601630901	0.7939185252138174	TCAATTGCATGGG
chr14	58774696	58774697	chr14:58774697:G:A	rs17254640	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr14	58918974	58918975	chr14:58918975:T:C	rs17833392	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr14	59015921	59015922	chr14:59015922:T:G	rs7146482	T	G	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr14	59146895	59146896	chr14:59146896:A:T	rs112999758	A	T	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr14	59296034	59296035	chr14:59296035:C:A	rs67935962	C	A	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr14	59296037	59296038	chr14:59296038:T:C	rs67324723	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	59583700	59583701	chr14:59583701:C:A	rs143983224	C	A	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr14	60328402	60328403	chr14:60328403:A:G	rs4901978	A	G	G	Sox1.mouse_HMG_3	5	1	+	6.516805912305786	5.284133141238696	TCAATAACATTTT
chr14	61091014	61091015	chr14:61091015:C:T	rs4902027	C	T	c	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr14	61091026	61091027	chr14:61091027:G:C	rs1571384	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	61178870	61178871	chr14:61178871:A:G	rs140815885	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr14	61262407	61262408	chr14:61262408:C:T	rs74529601	C	T	T	Sox1.mouse_HMG_3	12	1	+	8.203602712706603	8.289379574453307	TCAAAAGCATTGC
chr14	61288434	61288435	chr14:61288435:T:C	rs12437296	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr14	61460866	61460867	chr14:61460867:G:A	rs8010084	G	A	g	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr14	61461902	61461903	chr14:61461903:A:G	rs181077320	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	61461915	61461916	chr14:61461916:G:A	rs376995319	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr14	61488385	61488386	chr14:61488386:G:A	rs72712345	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr14	61556545	61556546	chr14:61556546:A:C	rs2251244	A	C	A	Sox1.mouse_HMG_3	10	1	-	6.548527805119599	-0.35156821649504777	TCAGTACCATTGT
chr14	61899816	61899817	chr14:61899817:A:G	rs11158366	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.603522036657203	-1.2833874711433038	ACCATAGCATTGA
chr14	62038014	62038015	chr14:62038015:A:G	rs1254913	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr14	62546675	62546676	chr14:62546676:T:C	rs7158453	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr14	63130493	63130494	chr14:63130494:G:A	rs115448386	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr14	63633035	63633036	chr14:63633036:G:T	rs75496293	G	T	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr14	63672804	63672805	chr14:63672805:G:A	rs11848291	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr14	63728366	63728367	chr14:63728367:C:T	rs561723565	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	63875443	63875444	chr14:63875444:A:G	rs148362867	A	G	A	Sox1.mouse_HMG_3	9	1	+	6.101883247827141	9.220717718515115	ACAATAACAATGA
chr14	63982440	63982441	chr14:63982441:T:G	rs74453251	T	G	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr14	64203052	64203053	chr14:64203053:C:T	rs6573548	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr14	64253674	64253675	chr14:64253675:A:G	rs4462498	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr14	64573141	64573142	chr14:64573142:C:T	rs17824845	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr14	64573171	64573172	chr14:64573172:A:G	rs926802	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr14	64880930	64880931	chr14:64880931:C:T	rs61012404	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr14	64986596	64986597	chr14:64986597:C:T	rs1347955386	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr14	65079414	65079415	chr14:65079415:T:C	rs60077675	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	65110577	65110578	chr14:65110578:G:T	chr14:65110578:G:T	G	T	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr14	65412190	65412191	chr14:65412191:C:T	rs1953417	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr14	65432735	65432736	chr14:65432736:A:G	rs2002692	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr14	65636708	65636709	chr14:65636709:G:A	rs17826790	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr14	65790748	65790749	chr14:65790749:A:G	rs11848444	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.339601974358118	-2.5473075334423907	TAAATGCCATTGG
chr14	65831767	65831768	chr14:65831768:C:T	rs7146380	C	T	C	Sox1.mouse_HMG_3	5	1	-	7.643413730240157	8.876086501307245	TCAATGCCACTGA
chr14	65836210	65836211	chr14:65836211:C:G	rs12434383	C	G	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	65847836	65847837	chr14:65847837:G:A	rs72716478	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr14	65853570	65853571	chr14:65853571:A:G	rs58021670	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.212479823069666	-1.6876161985449813	TGAATTGCATTGC
chr14	65972944	65972945	chr14:65972945:T:C	rs116408840	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr14	66249440	66249441	chr14:66249441:G:C	rs8003342	G	C	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	66329233	66329234	chr14:66329234:A:C	rs8003474	A	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr14	66510855	66510856	chr14:66510856:A:G	rs8005383	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.187765593710642	-0.7209891856045789	ACATTAACATTGA
chr14	66600566	66600567	chr14:66600567:T:C	rs913402924	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr14	67344167	67344168	chr14:67344168:G:T	rs113674504	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	67556814	67556815	chr14:67556815:A:G	rs1022612823	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.1825626554847055	-1.6184645064323007	TCAATGACATGGC
chr14	67941220	67941221	chr14:67941221:G:A	rs10133262	G	A	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr14	68027455	68027456	chr14:68027456:C:T	rs1288932492	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr14	68158400	68158401	chr14:68158401:G:A	rs1555944	G	A	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr14	68309342	68309343	chr14:68309343:T:C	rs11158729	T	C	T	Sox1.mouse_HMG_3	4	1	+	3.93048265713827	-2.9696133644763787	TCAATGGCACTGG
chr14	68309359	68309360	chr14:68309360:G:A	rs58616347	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr14	68414035	68414036	chr14:68414036:A:G	rs4545737	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr14	68471646	68471647	chr14:68471647:A:G	rs2525507	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.612180794357778	-1.2747287134427299	ACAATAGCATGGA
chr14	68513211	68513212	chr14:68513212:A:G	rs1541390	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr14	68548366	68548367	chr14:68548367:C:T	rs940535849	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr14	68548389	68548390	chr14:68548390:G:A	rs192733921	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr14	68565632	68565633	chr14:68565633:G:T	rs757185697	G	T	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr14	68656195	68656196	chr14:68656196:C:T	chr14:68656196:C:T	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr14	68675672	68675673	chr14:68675673:A:G	rs4902630	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	68689382	68689383	chr14:68689383:T:C	rs1007840	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr14	68694456	68694457	chr14:68694457:T:C	rs17106154	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.56854198108052	1.7675148191635146	TCAATTGTATTGT
chr14	68717052	68717053	chr14:68717053:T:A	rs17106170	T	A	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	68772069	68772070	chr14:68772070:A:T	rs140992332	A	T	A	Sox1.mouse_HMG_3	4	1	-	6.872142592165767	2.2369297963611547	TCAATTGTATTAA
chr14	68772079	68772080	chr14:68772080:C:T	rs72731539	C	T	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	69062778	69062779	chr14:69062779:C:G	rs28527397	C	G	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr14	69781628	69781629	chr14:69781629:T:C	rs113594012	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	69781640	69781641	chr14:69781641:G:A	rs17556915	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr14	69841739	69841740	chr14:69841740:A:C	rs148268147	A	C	A	Sox1.mouse_HMG_3	4	1	+	7.116231838897727	4.851348613087694	TCAAATCCATTGG
chr14	69841757	69841758	chr14:69841758:C:T	rs80234185	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr14	70399602	70399603	chr14:70399603:A:G	rs2332372	A	G	a	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr14	70422769	70422770	chr14:70422770:C:T	rs146316126	C	T	C	Sox1.mouse_HMG_3	1	1	+	9.918494147902928	4.960221916789303	TCACTGACATTGC
chr14	70709300	70709301	chr14:70709301:C:T	rs28550295	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr14	70753319	70753320	chr14:70753320:G:A	rs4902847	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr14	70762520	70762521	chr14:70762521:G:A	rs12886990	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	70827530	70827531	chr14:70827531:T:C	rs61990553	T	C	t	Sox1.mouse_HMG_3	9	1	+	8.347165406637938	1.4602558988374292	TGAATATCATTGA
chr14	71417682	71417683	chr14:71417683:G:T	rs75913963	G	T	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr14	71582888	71582889	chr14:71582889:C:T	rs141274794	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.1739038977841325	5.259680759530836	TCCATGACATTGC
chr14	72188193	72188194	chr14:72188194:A:G	rs78873191	A	G	A	Sox1.mouse_HMG_3	9	1	-	10.362416346464661	3.4755068386641557	TCACTAACATTGG
chr14	72736696	72736697	chr14:72736697:A:G	rs117936594	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.417024494377285	-0.4917302849379357	ACACTTCTATTGA
chr14	73023637	73023638	chr14:73023638:G:A	rs4545732	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr14	73345516	73345517	chr14:73345517:G:A	rs10136726	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr14	73582388	73582389	chr14:73582389:G:A	rs35390131	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr14	73662414	73662415	chr14:73662415:C:A	rs2878626	C	A	C	Sox1.mouse_HMG_3	12	1	+	7.124386445985726	9.623604349803575	TTAATGACATTGC
chr14	74254657	74254658	chr14:74254658:T:C	rs10150826	T	C	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr14	74398565	74398566	chr14:74398566:C:T	rs142470249	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr14	74503707	74503708	chr14:74503708:C:T	rs76132917	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr14	75159338	75159339	chr14:75159339:A:C	rs910316	A	C	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr14	75288488	75288489	chr14:75288489:C:T	rs1009392	C	T	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	75374946	75374947	chr14:75374947:T:C	rs10146392	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	75588341	75588342	chr14:75588342:A:G	rs1288203768	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	76033158	76033159	chr14:76033159:C:A	rs11159163	C	A	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	76160359	76160360	chr14:76160360:T:C	rs2543383	T	C	t	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr14	76294474	76294475	chr14:76294475:A:G	rs12897103	A	G	A	Sox1.mouse_HMG_3	10	1	-	7.255384283555275	2.620171487750661	ATAATTCCATTGA
chr14	76337243	76337244	chr14:76337244:T:A	rs7156805	T	A	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr14	76385404	76385405	chr14:76385405:T:C	rs17104397	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr14	76763312	76763313	chr14:76763313:C:T	rs2270325	C	T	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr14	76834875	76834876	chr14:76834876:C:T	rs7493768	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr14	76955660	76955661	chr14:76955661:C:T	chr14:76955661:C:T	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr14	77059563	77059564	chr14:77059564:G:A	rs116473237	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr14	77059597	77059598	chr14:77059598:C:T	rs1360912415	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	77109711	77109712	chr14:77109712:G:A	rs75351083	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr14	77134036	77134037	chr14:77134037:G:A	rs146510138	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr14	77173602	77173603	chr14:77173603:G:C	rs72725310	G	C	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr14	77307103	77307104	chr14:77307104:C:T	rs1263001832	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr14	77581201	77581202	chr14:77581202:A:C	rs994098546	A	C	A	Sox1.mouse_HMG_3	5	1	+	11.179336556179674	6.643349103080283	TCAAAAACATTGA
chr14	77581205	77581206	chr14:77581206:T:C	rs78827872	T	C	T	Sox1.mouse_HMG_3	9	1	+	11.179336556179674	4.292427048379167	TCAAAAACATTGA
chr14	77603128	77603129	chr14:77603129:A:G	rs9944097	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr14	77672948	77672949	chr14:77672949:T:C	rs11621162	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr14	77697507	77697508	chr14:77697508:G:A	rs2299931	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	77864153	77864154	chr14:77864154:C:T	rs17106489	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr14	77904111	77904112	chr14:77904112:A:G	rs12590199	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.368585286553667	-2.5401694927615535	TGAATTCCAGTGA
chr14	78018536	78018537	chr14:78018537:G:T	rs4903689	G	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr14	78084467	78084468	chr14:78084468:G:A	rs17106827	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr14	78836940	78836941	chr14:78836941:A:G	rs72685456	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr14	78982702	78982703	chr14:78982703:C:T	rs7142893	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr14	79134490	79134491	chr14:79134491:A:G	rs2062747	A	G	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr14	79562417	79562418	chr14:79562418:C:T	rs150330556	C	T	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr14	79562457	79562458	chr14:79562458:A:G	rs10148779	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr14	79680664	79680665	chr14:79680665:T:C	rs73329949	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.38190103252794	-1.5268537467872805	TCACTTTCATTCT
chr14	79878573	79878574	chr14:79878574:C:G	rs10135705	C	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr14	80127730	80127731	chr14:80127731:T:C	rs11623435	T	C	C	Sox1.mouse_HMG_3	1	1	-	5.459417979359305	5.459417979359305	TAACTTTCATTGA
chr14	80138150	80138151	chr14:80138151:A:G	rs1491488	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.042499527098299	-0.8662552522169222	TCACTTACATTTA
chr14	80570495	80570496	chr14:80570496:T:C	rs56341421	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	80792733	80792734	chr14:80792734:G:A	rs4523859	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	80930001	80930002	chr14:80930002:T:C	rs11845772	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr14	81031780	81031781	chr14:81031781:C:T	rs61978723	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	81205751	81205752	chr14:81205752:C:T	rs1227807634	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr14	81234659	81234660	chr14:81234660:T:C	rs12586249	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr14	81400113	81400114	chr14:81400114:G:A	rs3853419	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr14	81477965	81477966	chr14:81477966:G:T	rs12434541	G	T	g	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr14	81662973	81662974	chr14:81662974:C:T	rs117807231	C	T	C	Sox1.mouse_HMG_3	5	1	-	4.617931497497697	5.850604268564785	TCAAGGTCATTGC
chr14	81794201	81794202	chr14:81794202:A:C	rs10131470	A	C	C	Sox1.mouse_HMG_3	4	1	-	4.409605706986639	-2.490490314628008	TCAATGACATTTG
chr14	82385096	82385097	chr14:82385097:T:A	rs73354976	T	A	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	82667564	82667565	chr14:82667565:C:A	rs1777683	C	A	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr14	82796686	82796687	chr14:82796687:A:G	rs8003754	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr14	82988140	82988141	chr14:82988141:G:A	rs1263459	G	A	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	83210462	83210463	chr14:83210463:T:G	rs1379238	T	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	83474160	83474161	chr14:83474161:T:A	rs17118719	T	A	A	Sox1.mouse_HMG_3	3	1	-	5.6532856994071885	-1.1477414625098177	TCAATTCCACTGC
chr14	83710085	83710086	chr14:83710086:A:G	rs1958428	A	G	a	Sox1.mouse_HMG_3	10	1	-	5.1310093126081675	0.4957965168035534	TCAAGGCCATTGC
chr14	84006846	84006847	chr14:84006847:C:T	chr14:84006847:C:T	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr14	84112724	84112725	chr14:84112725:T:G	rs7159548	T	G	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr14	84144352	84144353	chr14:84144353:G:T	rs116097938	G	T	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr14	84209409	84209410	chr14:84209410:C:T	rs67304290	C	T	C	Sox1.mouse_HMG_3	12	1	-	3.93048265713827	7.218451133461473	TCAATGGCACTGG
chr14	84544529	84544530	chr14:84544530:A:G	rs79403425	A	G	A	Sox1.mouse_HMG_3	10	1	-	8.765408150843221	4.130195355038608	TCACTTCCATTAA
chr14	84646810	84646811	chr14:84646811:C:G	rs1481409	C	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr14	85017176	85017177	chr14:85017177:A:G	rs34238472	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr14	85115901	85115902	chr14:85115902:T:C	rs12437101	T	C	-	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr14	85124727	85124728	chr14:85124728:A:G	rs11851675	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr14	85196076	85196077	chr14:85196077:T:C	rs10135529	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr14	85567029	85567030	chr14:85567030:G:T	rs75371143	G	T	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr14	85644341	85644342	chr14:85644342:C:G	rs8018835	C	G	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr14	85792673	85792674	chr14:85792674:A:G	rs7150656	A	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr14	86674010	86674011	chr14:86674011:T:C	rs11851532	T	C	T	Sox1.mouse_HMG_3	2	1	-	3.6996262531825006	-3.2091285261327203	TCACTATCACTGC
chr14	87150197	87150198	chr14:87150198:T:G	rs12588790	T	G	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr14	87282670	87282671	chr14:87282671:T:C	rs76920004	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	87282679	87282680	chr14:87282680:C:T	rs12433698	C	T	T	Sox1.mouse_HMG_3	1	1	+	5.375507759764879	0.4172355286512517	ACAAAATCATTGT
chr14	87430532	87430533	chr14:87430533:G:A	rs57329059	G	A	G	Sox1.mouse_HMG_3	10	1	-	5.837282027955107	10.472494823759721	TCAATACAATCGA
chr14	87468771	87468772	chr14:87468772:T:A	rs146736449	T	A	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	87471804	87471805	chr14:87471805:A:G	rs12588463	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr14	87896074	87896075	chr14:87896075:T:C	rs529783959	T	C	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr14	88006250	88006251	chr14:88006251:C:T	rs8005161	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr14	88096637	88096638	chr14:88096638:C:T	rs751072	C	T	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr14	88249426	88249427	chr14:88249427:A:T	rs6575002	A	T	T	Sox1.mouse_HMG_3	10	1	-	3.946279455519679	-2.9538165660949685	TCAACTGCAGTGA
chr14	89186798	89186799	chr14:89186799:C:T	rs80314190	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	89214675	89214676	chr14:89214676:T:C	rs17716878	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.30598331626094	0.40588729464629236	TCACTGGCATCGA
chr14	89292796	89292797	chr14:89292797:G:C	rs759363	G	C	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr14	89310196	89310197	chr14:89310197:T:G	rs75067100	T	G	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	89390701	89390702	chr14:89390702:C:T	rs8012881	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	89472441	89472442	chr14:89472442:C:T	rs577140413	C	T	c	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr14	89472442	89472443	chr14:89472443:G:A	rs183175983	G	A	g	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr14	89770644	89770645	chr14:89770645:A:T	rs12431486	A	T	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	89775868	89775869	chr14:89775869:A:G	rs7161101	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.741669671347038	-1.0593574905699668	TCAATTCCATTTT
chr14	89951619	89951620	chr14:89951620:G:A	rs8013264	G	A	A	Sox1.mouse_HMG_3	11	1	+	5.210141466484583	1.1003010354986849	TAAATTTCATTGT
chr14	90137704	90137705	chr14:90137705:A:C	rs78293127	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	90229973	90229974	chr14:90229974:C:T	rs2149654	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	90235196	90235197	chr14:90235197:C:G	rs527833458	C	G	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr14	90247658	90247659	chr14:90247659:G:A	rs11621045	G	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr14	90729027	90729028	chr14:90729028:T:C	rs12883490	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr14	90976639	90976640	chr14:90976640:C:A	rs1570256	C	A	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	91090350	91090351	chr14:91090351:G:A	rs77314340	G	A	G	Sox1.mouse_HMG_3	3	1	-	7.286252201614204	2.6493895688936244	TCACTGTCATTCA
chr14	91114611	91114612	chr14:91114612:A:G	rs941677	A	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr14	91417154	91417155	chr14:91417155:G:A	rs1742546	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr14	91881335	91881336	chr14:91881336:A:G	rs2430347	A	G	G	Sox1.mouse_HMG_3	10	1	-	9.979237718442246	5.344024922637631	TCAAATGCATTGA
chr14	92309844	92309845	chr14:92309845:G:A	rs58056224	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	92349938	92349939	chr14:92349939:C:T	rs80123902	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr14	92466092	92466093	chr14:92466093:G:A	rs4900124	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr14	92466098	92466099	chr14:92466099:C:T	rs9323876	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.851348613087694	0.7415081821017955	TCAATTCCATGGG
chr14	92557304	92557305	chr14:92557305:A:T	rs12897368	A	T	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr14	92585368	92585369	chr14:92585369:G:A	rs10873425	G	A	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr14	92610180	92610181	chr14:92610181:G:A	rs12887586	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr14	92665669	92665670	chr14:92665670:C:T	rs7157523	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	93097222	93097223	chr14:93097223:G:C	rs187441452	G	C	G	Sox1.mouse_HMG_3	12	1	-	6.88281472330773	6.094064150802376	TCAAAGTCATTGC
chr14	93097223	93097224	chr14:93097224:C:A	rs192226233	C	A	C	Sox1.mouse_HMG_3	11	1	-	6.88281472330773	-0.0014876742996290382	TCAAAGTCATTGC
chr14	93177898	93177899	chr14:93177899:A:G	rs1263371	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr14	93857422	93857423	chr14:93857423:C:A	rs7154665	C	A	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr14	93873986	93873987	chr14:93873987:T:C	rs8013393	T	C	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	93873996	93873997	chr14:93873997:G:A	rs8012518	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr14	93897283	93897284	chr14:93897284:A:G	rs732910	A	G	A	Sox1.mouse_HMG_3	6	1	-	7.903520350250346	8.416598165360817	ACAATGTCATTGG
chr14	94311162	94311163	chr14:94311163:T:G	rs8005719	T	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	94366695	94366696	chr14:94366696:T:C	rs1956172	T	C	-	Sox1.mouse_HMG_3	5	1	-	5.9569696785604	4.724296907493311	ACAATACCATTCT
chr14	94374346	94374347	chr14:94374347:G:A	rs75723855	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr14	94383544	94383545	chr14:94383545:T:C	rs1028580	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr14	94386857	94386858	chr14:94386858:C:A	rs73349078	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr14	94452381	94452382	chr14:94452382:T:G	rs11845116	T	G	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr14	94466753	94466754	chr14:94466754:C:A	rs17825476	C	A	C	Sox1.mouse_HMG_3	12	1	-	4.589095543844609	5.463622978096664	ACAAAAGCATTGG
chr14	94576537	94576538	chr14:94576538:T:C	rs1885135	T	C	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr14	94615775	94615776	chr14:94615776:C:A	rs11160196	C	A	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr14	94655243	94655244	chr14:94655244:G:A	rs72696823	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.625367308171917	6.101883247827141	ACAATAGCAATGA
chr14	94678351	94678352	chr14:94678352:C:T	rs910341	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr14	94805610	94805611	chr14:94805611:T:C	rs35003236	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	94805612	94805613	chr14:94805613:G:T	rs80249960	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr14	94935809	94935810	chr14:94935810:T:C	rs1891855	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr14	95037042	95037043	chr14:95037043:C:G	rs66527455	C	G	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr14	95052875	95052876	chr14:95052876:A:G	rs2353730	A	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr14	95128349	95128350	chr14:95128350:G:A	rs56200135	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr14	95144414	95144415	chr14:95144415:G:A	rs113197964	G	A	G	Sox1.mouse_HMG_3	2	1	+	4.328189001401499	11.236943780716718	TCGCTAACATTGT
chr14	95249248	95249249	chr14:95249249:G:A	rs925155576	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	95275369	95275370	chr14:95275370:A:C	rs28677081	A	C	A	Sox1.mouse_HMG_3	5	1	-	9.948729724647503	9.439639851662621	TCACTTTCATTGT
chr14	95277016	95277017	chr14:95277017:T:C	rs10129405	T	C	C	Sox1.mouse_HMG_3	9	1	+	5.328281750116487	-1.5586277576840213	TCAAAGCCATTCA
chr14	95330005	95330006	chr14:95330006:T:C	rs6575507	T	C	C	Sox1.mouse_HMG_3	12	1	-	5.966493802513899	2.6785253261906967	TCACTTCCCTTGA
chr14	95445497	95445498	chr14:95445498:T:C	rs10144421	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr14	95445643	95445644	chr14:95445644:A:G	rs10134579	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr14	95463862	95463863	chr14:95463863:C:A	rs3783290	C	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr14	95523159	95523160	chr14:95523160:T:G	rs76368463	T	G	T	Sox1.mouse_HMG_3	12	1	+	8.059143376834834	7.184615942582777	TCAATTCCATTCT
chr14	95532026	95532027	chr14:95532027:T:A	rs8013688	T	A	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr14	95532028	95532029	chr14:95532029:C:T	rs8012514	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr14	95577963	95577964	chr14:95577964:T:C	rs2273750	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr14	95935388	95935389	chr14:95935389:C:G	rs117052114	C	G	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr14	96123022	96123023	chr14:96123023:T:C	rs11160311	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.7048390422837265	-1.2039157370314946	TCAATTACACTGC
chr14	96126790	96126791	chr14:96126791:C:T	rs113193431	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr14	96126805	96126806	chr14:96126806:C:T	rs117374193	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr14	96161697	96161698	chr14:96161698:C:T	rs55821580	C	T	C	Sox1.mouse_HMG_3	5	1	-	4.9443261144185495	6.176998885485636	TCCCTGTCATTGA
chr14	96383559	96383560	chr14:96383560:T:A	rs17094074	T	A	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr14	96811464	96811465	chr14:96811465:A:G	rs1342384162	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr14	97359968	97359969	chr14:97359969:C:T	rs1483999	C	T	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	97416963	97416964	chr14:97416964:A:G	rs11624413	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr14	97523812	97523813	chr14:97523813:A:G	rs117836265	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr14	97603100	97603101	chr14:97603101:C:T	rs8005344	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr14	97752653	97752654	chr14:97752654:G:A	rs11160404	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr14	97873989	97873990	chr14:97873990:C:T	rs10147034	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr14	98304880	98304881	chr14:98304881:T:C	rs8013791	T	C	T	Sox1.mouse_HMG_3	10	1	+	7.6791237935578565	3.043910997753243	TAAATGACATTGA
chr14	98351122	98351123	chr14:98351123:G:A	rs145664949	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr14	98544377	98544378	chr14:98544378:C:T	rs553716820	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr14	98691149	98691150	chr14:98691150:C:T	rs11621035	C	T	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr14	98766925	98766926	chr14:98766926:C:T	rs138122607	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr14	98791953	98791954	chr14:98791954:C:T	rs61981356	C	T	C	Sox1.mouse_HMG_3	7	1	+	6.136325169630318	2.5038576785351254	TCACTCTCATTGT
chr14	98801222	98801223	chr14:98801223:T:C	rs12432628	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr14	98829082	98829083	chr14:98829083:G:A	rs145442547	G	A	G	Sox1.mouse_HMG_3	7	1	-	9.952717666773093	6.3202501756779	TCACTGCCATTGT
chr14	98898049	98898050	chr14:98898050:G:A	rs1998227	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr14	99068385	99068386	chr14:99068386:T:G	rs807366	T	G	G	Sox1.mouse_HMG_3	6	1	-	10.513360882634512	10.461807539757974	TCACTTACATTGT
chr14	99504956	99504957	chr14:99504957:C:T	rs3918094	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr14	99559550	99559551	chr14:99559551:T:G	rs4905854	T	G	G	Sox1.mouse_HMG_3	10	1	+	5.972495794469776	-0.9276002271448713	TGACTTCCATTGA
chr14	99577233	99577234	chr14:99577234:T:C	rs113769244	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.215311178486118	-2.684784843128528	TCACTACCATTTC
chr14	99598952	99598953	chr14:99598953:G:A	rs58884100	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr14	99700955	99700956	chr14:99700956:T:A	rs574178325	T	A	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr14	99778141	99778142	chr14:99778142:G:A	rs61316733	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr14	99791929	99791930	chr14:99791930:G:C	rs7161099	G	C	C	Sox1.mouse_HMG_3	9	1	+	6.992352803948963	3.873518333260989	TCACTAGCAGTGT
chr14	99893756	99893757	chr14:99893757:A:G	rs1005766	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr14	100025216	100025217	chr14:100025217:A:G	rs201234591	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr14	100346739	100346740	chr14:100346740:T:C	rs941923	T	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr14	100607023	100607024	chr14:100607024:T:C	rs117894006	T	C	T	Sox1.mouse_HMG_3	0	1	+	6.648419827816641	-0.20375931427664185	TCAATTTCAGTAA
chr14	100831116	100831117	chr14:100831117:T:C	rs35431412	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	100834229	100834230	chr14:100834230:C:G	rs2400941	C	G	C	Sox1.mouse_HMG_3	11	1	-	5.3295013560955535	0.7626726639759904	TCATTACTATTGA
chr14	100892493	100892494	chr14:100892494:G:A	rs74082829	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr14	101009368	101009369	chr14:101009369:T:C	rs8181981	T	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr14	101059573	101059574	chr14:101059574:G:A	rs7342570	G	A	G	Sox1.mouse_HMG_3	6	1	-	5.1223505549075945	4.609272739797124	TCAATGCCTTTGC
chr14	101124196	101124197	chr14:101124197:A:G	rs73356967	A	G	A	Sox1.mouse_HMG_3	4	1	-	7.945448123852861	1.0453521022382133	ACAATAGCATTCA
chr14	101217258	101217259	chr14:101217259:A:G	rs8019725	A	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr14	101219051	101219052	chr14:101219052:C:T	rs4906076	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr14	101219089	101219090	chr14:101219090:G:A	rs4906077	G	A	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr14	101381415	101381416	chr14:101381416:G:A	rs28437801	G	A	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	101514594	101514595	chr14:101514595:T:C	rs11624215	T	C	c	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr14	101571562	101571563	chr14:101571563:T:C	rs11849893	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr14	101614398	101614399	chr14:101614399:G:A	rs12436143	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr14	101735234	101735235	chr14:101735235:A:G	rs1209153	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.73906256115389	1.1038497653492763	TCAATTCCACTGT
chr14	101909320	101909321	chr14:101909321:T:C	rs1616161	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr14	101926746	101926747	chr14:101926747:G:A	rs1741144	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr14	101943921	101943922	chr14:101943922:C:A	rs4906168	C	A	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	102078906	102078907	chr14:102078907:A:G	rs146450565	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr14	102697117	102697118	chr14:102697118:A:G	rs4900550	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.93871948689657	-0.8623076750204344	TCAACAGCATTGC
chr14	102829249	102829250	chr14:102829250:G:A	rs80008851	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr14	103009136	103009137	chr14:103009137:G:A	rs35897010	G	A	G	Sox1.mouse_HMG_3	7	1	-	8.598083671731706	4.965616180636513	TCACTGCCAGTGA
chr14	103209678	103209679	chr14:103209679:T:C	rs182560869	T	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr14	103328598	103328599	chr14:103328599:G:A	rs34143771	G	A	g	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr14	103418953	103418954	chr14:103418954:A:G	rs35233301	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr14	103868579	103868580	chr14:103868580:A:G	rs61995845	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr14	103868594	103868595	chr14:103868595:C:T	rs61995846	C	T	T	Sox1.mouse_HMG_3	7	1	+	8.649637014608244	5.017169523513051	TCACTGACAGTGA
chr14	103871122	103871123	chr14:103871123:T:C	rs78113926	T	C	T	Sox1.mouse_HMG_3	4	1	+	8.780386141087487	1.8802901194728405	ACAATGGCATTGC
chr14	104198470	104198471	chr14:104198471:A:G	rs10220498	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr14	104267643	104267644	chr14:104267644:A:G	rs13313386	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr14	104649894	104649895	chr14:104649895:G:T	rs8023004	G	T	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr14	104661116	104661117	chr14:104661117:A:G	rs56138896	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr14	104717931	104717932	chr14:104717932:T:A	rs7157045	T	A	T	Sox1.mouse_HMG_3	4	1	+	2.980031297225883	-1.6551814985787312	TCACTGCCACTGC
chr14	104724846	104724847	chr14:104724847:C:T	rs895466478	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr14	104724882	104724883	chr14:104724883:T:G	rs74887748	T	G	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr14	104894716	104894717	chr14:104894717:A:G	rs199553262	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.481669400164902	0.6806422382478978	TCAATGCCATCGT
chr14	104968154	104968155	chr14:104968155:C:A	rs867158094	C	A	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr14	104983168	104983169	chr14:104983169:A:G	rs73357598	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.905189316682984	-2.003565462632237	ACACAGCCATTGA
chr14	105282107	105282108	chr14:105282108:C:T	rs144999938	C	T	C	Sox1.mouse_HMG_3	11	1	+	4.548610823589348	2.2311371181015525	ACACTGGCATTCA
chr14	105290553	105290554	chr14:105290554:A:G	rs11625098	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr14	105669972	105669973	chr14:105669973:A:G	rs7154333	A	G	.	Sox1.mouse_HMG_3	12	1	+	5.041100090450907	1.7531316141277045	TCACGGGCATTGA
chr14	105830598	105830599	chr14:105830599:T:C	rs57183756	T	C	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr14	106001932	106001933	chr14:106001933:G:A	rs55985216	G	A	.	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr14	106003325	106003326	chr14:106003326:T:C	rs12588455	T	C	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr14	106165386	106165387	chr14:106165387:G:A	rs12433709	G	A	.	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr14	106865512	106865513	chr14:106865513:C:A	chr14:106865513:C:A	C	A	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr15	20231195	20231196	chr15:20231196:C:T	rs4931877	C	T	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr15	20258397	20258398	chr15:20258398:C:T	rs8033265	C	T	c	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr15	20263358	20263359	chr15:20263359:T:C	rs2123302	T	C	N	Sox1.mouse_HMG_3	12	1	+	6.649402984740789	6.563626122994085	TCACTCCCATTGT
chr15	20660143	20660144	chr15:20660144:A:G	rs12442259	A	G	a	Sox1.mouse_HMG_3	3	1	+	5.723219281595053	-1.077807880321951	TGAATTCCATTGT
chr15	20669770	20669771	chr15:20669771:A:G	rs7497715	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr15	20669796	20669797	chr15:20669797:A:G	rs7497743	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.279329073529752	-1.572850068563532	TAAATAATATTGA
chr15	20672525	20672526	chr15:20672526:A:G	rs10902997	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr15	21260080	21260081	chr15:21260081:C:T	rs4984169	C	T	.	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr15	22780608	22780609	chr15:22780609:A:G	rs143596530	A	G	a	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr15	22822086	22822087	chr15:22822087:G:T	rs7179251	G	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr15	22851673	22851674	chr15:22851674:C:T	rs117894530	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr15	23482507	23482508	chr15:23482508:G:A	rs2345408	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.508957272405556	1.8764897813103645	TCCCTGACATTGA
chr15	23485263	23485264	chr15:23485264:A:G	rs2345410	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr15	23851496	23851497	chr15:23851497:C:T	rs55779834	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr15	24162706	24162707	chr15:24162707:C:T	rs62127804	C	T	t	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr15	24363653	24363654	chr15:24363654:A:T	rs11853152	A	T	-	Sox1.mouse_HMG_3	8	1	+	4.591898195473561	-2.3168565838416595	TCACTTACAGTCA
chr15	25378545	25378546	chr15:25378546:T:C	rs60468744	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	25404050	25404051	chr15:25404051:G:A	rs116868056	G	A	G	Sox1.mouse_HMG_3	11	1	+	10.804723777994125	6.694883347008227	TTAATACCATTGA
chr15	25544257	25544258	chr15:25544258:T:C	rs17794409	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr15	25822438	25822439	chr15:25822439:C:T	rs11630331	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	25988983	25988984	chr15:25988984:A:G	rs11633753	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr15	26016452	26016453	chr15:26016453:A:G	rs17116501	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr15	26165657	26165658	chr15:26165658:T:G	rs7169491	T	G	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr15	26186173	26186174	chr15:26186174:G:A	rs566148901	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr15	26888307	26888308	chr15:26888308:G:T	rs80256359	G	T	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr15	26888321	26888322	chr15:26888322:C:A	rs9744196	C	A	C	Sox1.mouse_HMG_3	7	1	+	4.7918239202432105	-0.49867726510482036	ACAATTTCTTTGA
chr15	27176106	27176107	chr15:27176107:T:G	rs540490485	T	G	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	27263662	27263663	chr15:27263663:G:A	rs8043244	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	27388526	27388527	chr15:27388527:A:G	rs62001352	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr15	27401281	27401282	chr15:27401282:T:A	rs7166711	T	A	T	Sox1.mouse_HMG_3	12	1	-	4.426382756791613	2.012941714720467	CCAATCACATTGA
chr15	28265479	28265480	chr15:28265480:A:T	rs150568801	A	T	.	Sox1.mouse_HMG_3	10	1	-	4.016365003021772	-2.8837310185928766	TCAGTGGCATTGG
chr15	28947787	28947788	chr15:28947788:T:C	rs17680958	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr15	29469705	29469706	chr15:29469706:C:T	rs8025311	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr15	29636551	29636552	chr15:29636552:A:G	rs7183354	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr15	29905125	29905126	chr15:29905126:C:T	rs8026965	C	T	A	Sox1.mouse_HMG_3	8	1	-	5.768770632515716	12.677525411830935	TCAATTACGTTGT
chr15	29989804	29989805	chr15:29989805:A:G	rs72723264	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr15	29989819	29989820	chr15:29989820:A:G	rs79713568	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr15	30922181	30922182	chr15:30922182:G:A	rs57807297	G	A	A	Sox1.mouse_HMG_3	11	1	+	5.847947502820089	1.7381070718341904	TAAATATCATTGC
chr15	31079787	31079788	chr15:31079788:T:G	chr15:31079788:T:G	T	G	T	Sox1.mouse_HMG_3	0	1	+	8.45112390452856	1.5989447624352746	TCAATAGCAATGA
chr15	31286243	31286244	chr15:31286244:T:C	rs35307599	T	C	T	Sox1.mouse_HMG_3	12	1	-	5.1938938100782135	1.9059253337550106	TCATTACCAGTGA
chr15	31340874	31340875	chr15:31340875:A:C	rs149749886	A	C	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr15	31455851	31455852	chr15:31455852:G:T	rs67634762	G	T	G	Sox1.mouse_HMG_3	11	1	+	4.795811862368801	-2.088490535238558	ACAATGCCCTTGA
chr15	31455956	31455957	chr15:31455957:C:A	rs77315429	C	A	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr15	31595862	31595863	chr15:31595863:G:A	rs4779900	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.823880418251601	1.18701778553102	ACACTGACAGTGA
chr15	31609491	31609492	chr15:31609492:A:G	rs2085667	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr15	31669361	31669362	chr15:31669362:A:G	rs4041945	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.313560493054254	-1.573349014746253	ACAACTCCATTGA
chr15	31786008	31786009	chr15:31786009:T:C	rs11639248	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr15	32005968	32005969	chr15:32005969:A:G	rs7178622	A	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr15	32970535	32970536	chr15:32970536:T:C	rs8034555	T	C	C	Sox1.mouse_HMG_3	9	1	+	9.439639851662621	2.5527303438621147	TCACTGTCATTGT
chr15	33581549	33581550	chr15:33581550:G:A	rs2077268	G	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr15	33675464	33675465	chr15:33675465:C:T	rs189158226	C	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr15	33742834	33742835	chr15:33742835:C:T	rs4779642	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr15	33846259	33846260	chr15:33846260:T:C	rs964482977	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr15	33846281	33846282	chr15:33846282:G:T	rs115161274	G	T	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr15	34271860	34271861	chr15:34271861:A:C	rs347819	A	C	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr15	34761353	34761354	chr15:34761354:A:C	rs7174852	A	C	A	Sox1.mouse_HMG_3	8	1	+	3.802724594909806	-3.1060301844054146	TCAAAAGCATAGA
chr15	34774107	34774108	chr15:34774108:C:G	rs1521848	C	G	C	Sox1.mouse_HMG_3	1	1	+	4.987666755973212	-1.9150860313861346	ACATTTGCATTGA
chr15	34789149	34789150	chr15:34789150:C:G	rs189725849	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr15	34790023	34790024	chr15:34790024:C:T	rs1370154	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr15	34811566	34811567	chr15:34811567:C:T	rs75771340	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	34885305	34885306	chr15:34885306:G:A	rs10519967	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr15	35192804	35192805	chr15:35192805:A:G	rs55763113	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	35218909	35218910	chr15:35218910:G:A	rs117866038	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr15	35250832	35250833	chr15:35250833:G:C	rs78042821	G	C	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr15	35392941	35392942	chr15:35392942:C:G	rs28576618	C	G	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr15	35458847	35458848	chr15:35458848:A:G	rs10851974	A	G	G	Sox1.mouse_HMG_3	2	1	+	7.359708176190605	0.4509533968753854	TCAAAACCAGTGA
chr15	35618976	35618977	chr15:35618977:G:A	rs1383194355	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr15	35753453	35753454	chr15:35753454:G:C	rs149135772	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	35765341	35765342	chr15:35765342:A:G	rs11856070	A	G	A	Sox1.mouse_HMG_3	12	1	+	8.911796564624945	5.623828088301742	TAAATAACATTGA
chr15	35847204	35847205	chr15:35847205:T:C	rs2646780	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.212798232229279	-1.5882289296877257	TCAATTTCATGGT
chr15	35853404	35853405	chr15:35853405:C:A	rs1497805	C	A	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr15	35933536	35933537	chr15:35933537:A:C	rs11073131	A	C	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr15	35956777	35956778	chr15:35956778:C:A	rs1397255	C	A	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr15	36106834	36106835	chr15:36106835:A:G	rs12592136	A	G	A	Sox1.mouse_HMG_3	2	1	+	6.670115088597155	-0.23863969071806457	TCACTAACATTCT
chr15	36109982	36109983	chr15:36109983:G:A	rs11854628	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr15	36357070	36357071	chr15:36357071:G:A	rs565913563	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr15	36483860	36483861	chr15:36483861:A:G	rs2167992	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.9495676441256276	1.3143548483210137	TCAATATCACTGT
chr15	36601765	36601766	chr15:36601766:G:A	rs116748469	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr15	36785402	36785403	chr15:36785403:T:C	rs9944176	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr15	36952084	36952085	chr15:36952085:G:A	rs548208020	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr15	37001590	37001591	chr15:37001591:C:T	rs12900044	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr15	37196095	37196096	chr15:37196096:C:T	rs72712905	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	37880320	37880321	chr15:37880321:T:G	chr15:37880321:T:G	T	G	T	Sox1.mouse_HMG_3	11	1	-	4.917483866391228	4.460495605257563	ACACTGTCATTAA
chr15	38453263	38453264	chr15:38453264:G:C	rs34590086	G	C	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr15	38646475	38646476	chr15:38646476:C:G	rs1122891	C	G	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr15	38646482	38646483	chr15:38646483:C:G	rs72729336	C	G	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr15	38697568	38697569	chr15:38697569:G:A	rs35024396	G	A	a	Sox1.mouse_HMG_3	3	1	-	3.6777809816677878	-0.9590816510527935	TCACTATCTTTGC
chr15	38829043	38829044	chr15:38829044:C:T	rs13380045	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr15	38872851	38872852	chr15:38872852:A:G	rs4614698	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	38941805	38941806	chr15:38941806:G:A	rs540762102	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr15	38949650	38949651	chr15:38949651:A:C	rs1036303	A	C	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr15	38991747	38991748	chr15:38991748:G:A	rs114776735	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr15	38991777	38991778	chr15:38991778:C:T	rs10851375	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr15	39063658	39063659	chr15:39063659:G:A	rs1368814	G	A	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr15	39075333	39075334	chr15:39075334:A:G	rs12595617	A	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr15	39075353	39075354	chr15:39075354:A:G	rs12915961	A	G	A	Sox1.mouse_HMG_3	5	1	+	3.7658961999995735	2.533223428932486	TCCCTAGCATTGC
chr15	39079858	39079859	chr15:39079859:C:T	rs12372998	C	T	t	Sox1.mouse_HMG_3	6	1	+	5.48185631123688	4.968778496126408	TCACTGCCATTTA
chr15	39079859	39079860	chr15:39079860:C:T	rs12372999	C	T	t	Sox1.mouse_HMG_3	7	1	+	5.48185631123688	1.8493888201416877	TCACTGCCATTTA
chr15	39157004	39157005	chr15:39157005:T:C	rs148731160	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr15	39157034	39157035	chr15:39157035:G:T	rs116306380	G	T	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr15	39184935	39184936	chr15:39184936:A:G	rs78740587	A	G	A	Sox1.mouse_HMG_3	5	1	-	8.39464990100203	4.582245345984848	TCAATTTTATTGC
chr15	39198435	39198436	chr15:39198436:G:A	rs78312856	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr15	39205791	39205792	chr15:39205792:A:G	rs17684646	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr15	39594228	39594229	chr15:39594229:T:A	rs61432611	T	A	T	Sox1.mouse_HMG_3	10	1	+	4.591898195473561	-2.3081978261410865	TCACTTACAGTCA
chr15	39778699	39778700	chr15:39778700:G:A	rs1491624	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr15	39819956	39819957	chr15:39819957:A:G	rs676455	A	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr15	39882080	39882081	chr15:39882081:A:C	rs4924397	A	C	C	Sox1.mouse_HMG_3	10	1	-	7.46028869997766	0.5601926783630131	TCAATTTCATTCC
chr15	39970357	39970358	chr15:39970358:A:G	rs10851392	A	G	G	Sox1.mouse_HMG_3	6	1	+	8.930246954376932	8.453731014721706	TCAATAACATTTA
chr15	40084890	40084891	chr15:40084891:T:C	rs7183977	T	C	t	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	40090239	40090240	chr15:40090240:T:C	rs10518679	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr15	40126555	40126556	chr15:40126556:T:C	rs116432681	T	C	-	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr15	40227506	40227507	chr15:40227507:A:T	rs4924437	A	T	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr15	40319659	40319660	chr15:40319660:T:C	rs11070264	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	40593963	40593964	chr15:40593964:A:T	rs185473217	A	T	A	Sox1.mouse_HMG_3	10	1	-	6.406576668851221	-0.4935193527634272	TCCATAACATTGC
chr15	40755859	40755860	chr15:40755860:G:A	rs7175361	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.654670166392092	1.5448297354061946	ACAATTTTATTGT
chr15	40806860	40806861	chr15:40806861:G:A	rs116935857	G	A	G	Sox1.mouse_HMG_3	6	1	-	4.326912534393712	3.8138347192832422	TCAAGCCCATTGA
chr15	40811541	40811542	chr15:40811542:G:A	rs690269	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr15	41231034	41231035	chr15:41231035:T:G	rs1007448807	T	G	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr15	41690004	41690005	chr15:41690005:A:G	rs7169496	A	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr15	41772956	41772957	chr15:41772957:G:A	rs375074579	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr15	41935242	41935243	chr15:41935243:T:C	rs2114477	T	C	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr15	41961757	41961758	chr15:41961758:A:G	rs1704409	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr15	42388711	42388712	chr15:42388712:C:T	rs28364416	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr15	42494945	42494946	chr15:42494946:C:A	rs1900921	C	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr15	42499259	42499260	chr15:42499260:C:T	rs2595939	C	T	-	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	42696702	42696703	chr15:42696703:G:A	rs142591139	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	42704410	42704411	chr15:42704411:T:C	rs147707603	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.804612899383744	-2.1041418799314755	TCAAGAACATTAA
chr15	43267761	43267762	chr15:43267762:T:A	rs505249	T	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr15	44710502	44710503	chr15:44710503:T:C	rs78335029	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.860665733621987	-0.9915134084712987	TCACTAAAATTGC
chr15	44710534	44710535	chr15:44710535:T:C	rs3759876	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr15	44783988	44783989	chr15:44783989:G:C	rs555985866	G	C	N	Sox1.mouse_HMG_3	6	1	-	4.848691847342998	4.423729250564312	TAAATTCCATTGG
chr15	44783989	44783990	chr15:44783990:A:G	rs75987852	A	G	N	Sox1.mouse_HMG_3	5	1	-	4.848691847342998	1.0362872923258126	TAAATTCCATTGG
chr15	45200540	45200541	chr15:45200541:C:A	chr15:45200541:C:A	C	A	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr15	45241775	45241776	chr15:45241776:T:C	rs28897155	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr15	45551816	45551817	chr15:45551817:C:A	rs186909624	C	A	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr15	45642641	45642642	chr15:45642642:G:A	rs607594	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr15	45642670	45642671	chr15:45642671:C:A	rs607541	C	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	45862137	45862138	chr15:45862138:G:C	rs117437423	G	C	G	Sox1.mouse_HMG_3	7	1	-	12.591748550084231	5.712012159619622	TCAATTACATTGC
chr15	46015275	46015276	chr15:46015276:A:G	rs12908219	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr15	46390537	46390538	chr15:46390538:A:G	rs77905174	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr15	47333082	47333083	chr15:47333083:G:T	rs12913499	G	T	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	47394392	47394393	chr15:47394393:C:T	rs11070582	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	47551861	47551862	chr15:47551862:T:C	rs28505872	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.127021370482577	-1.6740057914344282	TCAATTTCATAGC
chr15	47571494	47571495	chr15:47571495:A:C	rs1435761	A	C	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	47762921	47762922	chr15:47762922:T:C	rs3743276	T	C	C	Sox1.mouse_HMG_3	3	1	-	7.698381165425877	0.8973540035088701	ACAATTACATTCA
chr15	48389105	48389106	chr15:48389106:G:A	rs74918657	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr15	48389113	48389114	chr15:48389114:T:C	rs548815197	T	C	T	Sox1.mouse_HMG_3	5	1	+	7.629997061740825	3.8175925067236407	ACAAATACATTGA
chr15	48442247	48442248	chr15:48442248:C:G	rs2278185	C	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	48963365	48963366	chr15:48963366:C:A	rs181281946	C	A	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr15	49620570	49620571	chr15:49620571:C:T	rs13329455	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr15	49689778	49689779	chr15:49689779:T:C	rs12905627	T	C	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr15	49824086	49824087	chr15:49824087:T:G	rs2660966	T	G	G	Sox1.mouse_HMG_3	0	1	+	4.69738795812891	-2.1547911839643747	TCTATGGCATTGC
chr15	49826927	49826928	chr15:49826928:C:T	rs4393520	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr15	49871656	49871657	chr15:49871657:A:G	rs8041979	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	50770543	50770544	chr15:50770544:A:G	rs8038437	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr15	51184089	51184090	chr15:51184090:G:A	rs35373992	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr15	51184092	51184093	chr15:51184093:G:A	rs12911314	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr15	51204071	51204072	chr15:51204072:C:T	rs146169068	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr15	51329930	51329931	chr15:51329931:G:T	rs7174997	G	T	.	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr15	51329939	51329940	chr15:51329940:C:T	rs77487169	C	T	.	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr15	51672667	51672668	chr15:51672668:T:C	rs1378892	T	C	C	Sox1.mouse_HMG_3	6	1	-	6.406576668851221	5.930060729195997	TCAATAACGTTGC
chr15	51869018	51869019	chr15:51869019:G:A	rs78013728	G	A	G	Sox1.mouse_HMG_3	7	1	-	6.403520451648614	2.77105296055342	TCACTTACATTAT
chr15	51879059	51879060	chr15:51879060:T:C	rs186215209	T	C	T	Sox1.mouse_HMG_3	3	1	-	9.714438610851053	2.9134114489340477	ACAATTCCATTGC
chr15	51924407	51924408	chr15:51924408:T:G	chr15:51924408:T:G	T	G	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr15	52071676	52071677	chr15:52071677:T:C	rs1028887313	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.242737241062088	0.3426412194474395	TTAATTGCATTGT
chr15	52100857	52100858	chr15:52100858:G:C	rs74013702	G	C	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	52206162	52206163	chr15:52206163:G:A	rs4776016	G	A	A	Sox1.mouse_HMG_3	5	1	+	6.61388325530598	7.846556026373069	ACACTGTCATTGT
chr15	52484045	52484046	chr15:52484046:G:C	rs7168981	G	C	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr15	52484078	52484079	chr15:52484079:T:A	rs17707984	T	A	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr15	52768958	52768959	chr15:52768959:T:C	rs2440327	T	C	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr15	52789023	52789024	chr15:52789024:C:A	rs2075613	C	A	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr15	53539992	53539993	chr15:53539993:G:A	rs12915842	G	A	g	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	53746303	53746304	chr15:53746304:T:C	rs28549113	T	C	T	Sox1.mouse_HMG_3	0	1	-	6.032140435485223	2.005717889748581	ACAATTCCAGTGT
chr15	54153499	54153500	chr15:54153500:G:A	rs28416823	G	A	G	Sox1.mouse_HMG_3	9	1	+	4.581747135270101	1.4629126645821262	TCAAGATCAGTGA
chr15	55590965	55590966	chr15:55590966:G:A	rs75931561	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr15	55848188	55848189	chr15:55848189:G:A	rs3759865	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr15	55894643	55894644	chr15:55894644:A:G	rs140183266	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.3296120402766505	-2.471415121640355	TCAATTTCTTTGG
chr15	55894669	55894670	chr15:55894670:T:A	rs73416241	T	A	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr15	55912137	55912138	chr15:55912138:A:G	rs140022173	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr15	55916336	55916337	chr15:55916337:G:A	rs12440230	G	A	G	Sox1.mouse_HMG_3	8	1	+	4.190858796778258	11.099613576093477	TCACTACCGTTGC
chr15	55931808	55931809	chr15:55931809:T:G	rs12595359	T	G	T	Sox1.mouse_HMG_3	8	1	-	4.225030425943794	-2.6837243533714266	TAAAAACCATTGA
chr15	55950987	55950988	chr15:55950988:G:A	rs78248035	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr15	56052432	56052433	chr15:56052433:C:G	rs10518832	C	G	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr15	56093669	56093670	chr15:56093670:A:G	rs33984059	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	56321098	56321099	chr15:56321099:G:A	rs2194942	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr15	56356974	56356975	chr15:56356975:G:C	rs2725866	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	56449979	56449980	chr15:56449980:C:A	rs35978617	C	A	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr15	56586370	56586371	chr15:56586371:A:T	rs4309345	A	T	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr15	56886565	56886566	chr15:56886566:G:A	rs114012619	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr15	56886566	56886567	chr15:56886567:C:T	rs116467068	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr15	56948561	56948562	chr15:56948562:A:C	rs4774902	A	C	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr15	56993056	56993057	chr15:56993057:A:G	rs12899187	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr15	57156256	57156257	chr15:57156257:G:A	rs2593211	G	A	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr15	57288924	57288925	chr15:57288925:A:G	rs78738069	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr15	57343752	57343753	chr15:57343753:A:G	rs8026926	A	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr15	57463444	57463445	chr15:57463445:A:G	rs1280375	A	G	A	Sox1.mouse_HMG_3	12	1	+	5.365113835930792	2.0771453596075893	ACAACTACATTGA
chr15	57612627	57612628	chr15:57612628:T:C	rs12324526	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr15	57655433	57655434	chr15:57655434:C:T	rs4774277	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	57755735	57755736	chr15:57755736:A:G	rs6493949	A	G	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	58064383	58064384	chr15:58064384:A:T	rs1003356234	A	T	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	58114996	58114997	chr15:58114997:G:A	rs2704210	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr15	58161950	58161951	chr15:58161951:T:C	rs4775015	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.888924965977903	-0.9979845418226025	TCAATTACATCCA
chr15	58346579	58346580	chr15:58346580:A:G	rs566160	A	G	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	58346590	58346591	chr15:58346591:T:C	rs187246113	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.417727258608437	-2.3832999033085693	TCAATTGCTTTGG
chr15	58346611	58346612	chr15:58346612:T:C	rs111872095	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr15	58459677	58459678	chr15:58459678:T:G	rs936960	T	G	G	Sox1.mouse_HMG_3	2	1	-	5.0454924768246805	-1.8632623024905397	TCAATCCCAGTGT
chr15	58499905	58499906	chr15:58499906:T:C	rs57783456	T	C	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr15	58535996	58535997	chr15:58535997:A:G	rs148076190	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	58857200	58857201	chr15:58857201:G:A	rs1054991	G	A	G	Sox1.mouse_HMG_3	6	1	+	6.872142592165767	7.348658531820989	TCAATTGTATTAA
chr15	58909022	58909023	chr15:58909023:T:C	rs28538484	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	59125389	59125390	chr15:59125390:C:T	rs28383569	C	T	C	Sox1.mouse_HMG_3	7	1	+	7.5657966763711	3.9333291852759067	TCAAATGCATTGT
chr15	59170597	59170598	chr15:59170598:C:A	rs12438396	C	A	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr15	59170631	59170632	chr15:59170632:T:C	rs528312257	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr15	59439664	59439665	chr15:59439665:A:T	rs56014137	A	T	A	Sox1.mouse_HMG_3	0	1	-	5.249037774088858	2.4232811777322163	TCATTAGCATTGG
chr15	59704807	59704808	chr15:59704808:A:G	rs17191002	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr15	59848079	59848080	chr15:59848080:G:T	rs17269789	G	T	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	59893032	59893033	chr15:59893033:C:T	rs11071494	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	60155553	60155554	chr15:60155554:G:T	rs77606508	G	T	G	Sox1.mouse_HMG_3	7	1	-	4.927628175695814	-0.3628730096522166	TTACTAGCATTGG
chr15	60227364	60227365	chr15:60227365:A:C	rs75980329	A	C	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr15	60374486	60374487	chr15:60374487:C:T	rs4775262	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr15	60395644	60395645	chr15:60395645:A:G	rs2100432	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr15	60606269	60606270	chr15:60606270:A:G	rs17303062	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.627974418365065	-1.2721216032495826	ACAATAGCATTTA
chr15	60861351	60861352	chr15:60861352:T:C	rs10519085	T	C	T	Sox1.mouse_HMG_3	10	1	+	6.074622782612373	1.4394099868077592	CCACTTACATTGA
chr15	60888737	60888738	chr15:60888738:T:C	rs16943286	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr15	60888764	60888765	chr15:60888765:G:A	rs547422800	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr15	60916967	60916968	chr15:60916968:G:T	rs553749137	G	T	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr15	60932099	60932100	chr15:60932100:A:C	rs79995443	A	C	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr15	61083280	61083281	chr15:61083281:T:C	rs4775355	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	61144681	61144682	chr15:61144682:G:A	rs12908710	G	A	A	Sox1.mouse_HMG_3	7	1	-	4.328096959728521	0.6956294686333289	TCAACAGCATTAA
chr15	61479768	61479769	chr15:61479769:G:A	rs34601722	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	61606422	61606423	chr15:61606423:A:G	rs8035133	A	G	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr15	61791436	61791437	chr15:61791437:C:G	rs17238012	C	G	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	61821719	61821720	chr15:61821720:T:C	rs11853774	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.955092822643554	-1.9536619566716662	ACATTGACATTGA
chr15	61829408	61829409	chr15:61829409:A:G	rs8023607	A	G	G	Sox1.mouse_HMG_3	8	1	+	4.815203935006014	-2.0935508443092044	TCAATGTCATCCA
chr15	62638354	62638355	chr15:62638355:A:G	rs116525722	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr15	62807890	62807891	chr15:62807891:C:T	rs60910902	C	T	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr15	62901863	62901864	chr15:62901864:G:A	rs8042820	G	A	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	63123023	63123024	chr15:63123024:A:C	rs2652789	A	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	63195221	63195222	chr15:63195222:C:G	rs753891001	C	G	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr15	63251955	63251956	chr15:63251956:A:G	rs111247008	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr15	63487456	63487457	chr15:63487457:G:A	rs373060670	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr15	63542119	63542120	chr15:63542120:A:T	rs1421151	A	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr15	63977078	63977079	chr15:63977079:T:G	rs527707795	T	G	T	Sox1.mouse_HMG_3	4	1	+	5.360307414471466	-1.5397886071431808	TCAATGGCATCAA
chr15	64232780	64232781	chr15:64232781:G:A	rs8033972	G	A	a	Sox1.mouse_HMG_3	1	1	-	5.032441332750334	0.07416910163670853	TCTCTGGCATTGA
chr15	64248375	64248376	chr15:64248376:A:G	rs150730913	A	G	A	Sox1.mouse_HMG_3	5	1	+	7.568308644547461	6.335635873480372	TTAATAACATTGG
chr15	64284561	64284562	chr15:64284562:T:A	rs145720277	T	A	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr15	64795409	64795410	chr15:64795410:G:T	rs116277170	G	T	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	64836070	64836071	chr15:64836071:C:A	rs566065433	C	A	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr15	64924335	64924336	chr15:64924336:A:G	rs876431	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr15	65197380	65197381	chr15:65197381:G:A	rs150946463	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr15	65218285	65218286	chr15:65218286:T:G	rs11071830	T	G	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr15	65296644	65296645	chr15:65296645:G:A	rs148273100	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr15	65411286	65411287	chr15:65411287:C:G	rs34355056	C	G	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr15	65596020	65596021	chr15:65596021:G:T	rs7165102	G	T	T	Sox1.mouse_HMG_3	11	1	+	4.950328106374425	-1.9339742912329352	TAACTGTCATTGA
chr15	65798346	65798347	chr15:65798347:C:A	rs2727096	C	A	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr15	65984015	65984016	chr15:65984016:C:T	rs11639031	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr15	66040761	66040762	chr15:66040762:C:T	rs170781	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr15	66069974	66069975	chr15:66069975:T:C	rs537926779	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	66115344	66115345	chr15:66115345:A:G	rs12438373	A	G	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr15	66145246	66145247	chr15:66145247:A:G	rs1421269909	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.124364604737881	-1.7625449030626272	TGAATTTCATTGC
chr15	66177651	66177652	chr15:66177652:C:T	rs1382052	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr15	66180703	66180704	chr15:66180704:T:C	rs11858700	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.498190840615132	-2.3887186671853757	TCCATTCTATTGA
chr15	66186913	66186914	chr15:66186914:T:C	rs1351030	T	C	C	Sox1.mouse_HMG_3	8	1	-	3.627817501305668	-3.280937278009553	TCAAAGCCAGTGC
chr15	66438946	66438947	chr15:66438947:G:C	rs8036023	G	C	G	Sox1.mouse_HMG_3	9	1	-	6.7119219721108205	9.830756442798794	TCACTACCACTGA
chr15	66503598	66503599	chr15:66503599:C:T	rs28673176	C	T	C	Sox1.mouse_HMG_3	1	1	+	8.82739898176521	3.869126750651584	ACAATACCATTAA
chr15	66776243	66776244	chr15:66776244:A:G	rs12592142	A	G	G	Sox1.mouse_HMG_3	4	1	-	5.466062687229593	-1.4340333343850555	TCACTGCCATGGA
chr15	66853582	66853583	chr15:66853583:A:C	chr15:66853583:A:C	A	C	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr15	67019995	67019996	chr15:67019996:C:T	rs266304	C	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr15	67020032	67020033	chr15:67020033:T:C	rs266305	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr15	67024617	67024618	chr15:67024618:G:C	rs7162222	G	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr15	67024650	67024651	chr15:67024651:C:T	rs116885903	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr15	67133235	67133236	chr15:67133236:T:A	rs10163132	T	A	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr15	67182744	67182745	chr15:67182745:C:T	rs10152566	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	67214440	67214441	chr15:67214441:C:T	rs11855544	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	67565203	67565204	chr15:67565204:A:G	rs7182417	A	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr15	67755557	67755558	chr15:67755558:G:C	rs770984207	G	C	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr15	67808284	67808285	chr15:67808285:C:T	rs1871307	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr15	67916438	67916439	chr15:67916439:G:A	rs12593295	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr15	67916479	67916480	chr15:67916480:C:T	rs77198714	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr15	68227760	68227761	chr15:68227761:T:C	rs76963971	T	C	T	Sox1.mouse_HMG_3	9	1	-	3.5748980319574657	6.693732502645441	TCACTTCCAATGT
chr15	68277603	68277604	chr15:68277604:G:A	rs78238174	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr15	68313364	68313365	chr15:68313365:T:C	rs7174916	T	C	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr15	68468176	68468177	chr15:68468177:A:G	rs2120865	A	G	A	Sox1.mouse_HMG_3	5	1	+	5.297779463281737	4.065106692214648	TCAATAATATTTA
chr15	68578237	68578238	chr15:68578238:T:C	rs777808562	T	C	T	Sox1.mouse_HMG_3	2	1	-	3.8861653757541776	-3.022589403561042	ACACTACCACTGA
chr15	68669599	68669600	chr15:68669600:G:A	rs4776416	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr15	68786003	68786004	chr15:68786004:A:T	rs139293860	A	T	A	Sox1.mouse_HMG_3	0	1	-	3.9086373856235563	1.082880789266914	TCGATGGCATTGG
chr15	68786006	68786007	chr15:68786007:G:A	rs75960637	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr15	68880400	68880401	chr15:68880401:G:C	rs4777095	G	C	C	Sox1.mouse_HMG_3	3	1	-	5.137082835539779	0.5002202028191969	TCACTTAAATTGC
chr15	68880420	68880421	chr15:68880421:G:A	rs4777096	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	69100052	69100053	chr15:69100053:G:A	rs4777114	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr15	69194701	69194702	chr15:69194702:G:A	rs8042958	G	A	g	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr15	69238118	69238119	chr15:69238119:A:G	rs1503287	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.265114103817423	-0.6217954039830855	TCTCTAGCATTGA
chr15	69469032	69469033	chr15:69469033:C:T	rs1404684573	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr15	69667711	69667712	chr15:69667712:G:A	rs1041948179	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr15	69751657	69751658	chr15:69751658:C:T	rs72745817	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr15	69766370	69766371	chr15:69766371:T:C	rs12440834	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr15	69784917	69784918	chr15:69784918:T:C	rs1470833	T	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr15	69795780	69795781	chr15:69795781:T:C	rs115339988	T	C	C	Sox1.mouse_HMG_3	9	1	+	5.674000370867544	-1.212909136932964	TCAGTACCATTGG
chr15	69861904	69861905	chr15:69861905:G:A	rs117942117	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	69953253	69953254	chr15:69953254:A:T	rs61999900	A	T	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr15	70046097	70046098	chr15:70046098:A:G	rs149835428	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	70111264	70111265	chr15:70111265:T:A	rs34950331	T	A	T	Sox1.mouse_HMG_3	6	1	+	3.734356618889724	4.298987776876732	GCACTATCATTGC
chr15	70116613	70116614	chr15:70116614:C:T	rs17759653	C	T	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr15	70140918	70140919	chr15:70140919:A:T	rs75764391	A	T	A	Sox1.mouse_HMG_3	9	1	-	5.1609225557570735	-1.7259869520434343	TCATTATCATTGG
chr15	70140926	70140927	chr15:70140927:G:A	rs78961601	G	A	A	Sox1.mouse_HMG_3	1	1	-	5.1609225557570735	0.2026503246434479	TCATTATCATTGG
chr15	70257292	70257293	chr15:70257293:C:A	rs34508749	C	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr15	70328257	70328258	chr15:70328258:G:A	rs534593743	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	70494387	70494388	chr15:70494388:G:A	rs56179949	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr15	70518742	70518743	chr15:70518743:A:C	rs6494875	A	C	C	Sox1.mouse_HMG_3	11	1	+	5.477439674520019	5.020451413386354	TCACTTCCATTAG
chr15	70524301	70524302	chr15:70524302:G:T	rs57962183	G	T	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr15	70524302	70524303	chr15:70524303:C:T	rs4777294	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	70539474	70539475	chr15:70539475:T:C	rs6494876	T	C	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	70614184	70614185	chr15:70614185:C:T	rs146108624	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr15	70720713	70720714	chr15:70720714:T:A	rs7164177	T	A	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr15	70775245	70775246	chr15:70775246:T:C	rs7162623	T	C	C	Sox1.mouse_HMG_3	0	1	+	4.351457311791364	-2.500721830301921	TCAATTTCAATGG
chr15	71225895	71225896	chr15:71225896:A:T	rs925759	A	T	A	Sox1.mouse_HMG_3	10	1	-	4.924195885643169	-1.9759001359714785	ACAATGTCAGTGC
chr15	71251635	71251636	chr15:71251636:T:C	rs4776542	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.661203595901313	0.025990800096699518	TCCATAGCAGTGA
chr15	71635773	71635774	chr15:71635774:A:G	rs12917055	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.971300448926019	-0.9156090588744874	TTAATTCCATTAA
chr15	71635786	71635787	chr15:71635787:T:C	rs72625787	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr15	71744268	71744269	chr15:71744269:A:G	rs11072325	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr15	72201054	72201055	chr15:72201055:C:T	rs78020492	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr15	72226676	72226677	chr15:72226677:T:C	rs8192373	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr15	72490537	72490538	chr15:72490538:C:T	rs12912445	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr15	72964171	72964172	chr15:72964172:C:T	rs1839271	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr15	73663080	73663081	chr15:73663081:A:T	rs533135057	A	T	A	Sox1.mouse_HMG_3	9	1	-	5.18208323355795	-1.7048262742425577	TCAATTCAATTCA
chr15	73767736	73767737	chr15:73767737:T:A	rs17187323	T	A	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr15	73832434	73832435	chr15:73832435:C:G	rs16958352	C	G	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	74053887	74053888	chr15:74053888:T:A	rs78792143	T	A	T	Sox1.mouse_HMG_3	2	1	-	4.890892437273827	-2.0178623420413935	TCATTGGCATTGT
chr15	74184288	74184289	chr15:74184289:A:C	rs351239	A	C	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr15	74363241	74363242	chr15:74363242:A:G	rs7174179	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.2041394745287075	0.568926678724093	TCAATTTCTTTGT
chr15	74504719	74504720	chr15:74504720:G:A	rs6495109	G	A	A	Sox1.mouse_HMG_3	11	1	+	3.912903578980884	-0.1969368520050141	TCATTCTCATTGA
chr15	74631169	74631170	chr15:74631170:T:A	rs79171739	T	A	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr15	74638060	74638061	chr15:74638061:A:G	rs75388839	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr15	75097955	75097956	chr15:75097956:T:C	rs71401675	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr15	75145573	75145574	chr15:75145574:C:T	rs7181933	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr15	75475503	75475504	chr15:75475504:A:G	rs11637263	A	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr15	75629294	75629295	chr15:75629295:C:A	rs4886722	C	A	c	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr15	75632195	75632196	chr15:75632196:A:G	rs79759141	A	G	G	Sox1.mouse_HMG_3	2	1	+	4.899551537641425	-2.0092032416737946	ACAGTTTCATTGA
chr15	75667161	75667162	chr15:75667162:A:C	chr15:75667162:A:C	A	C	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr15	76398264	76398265	chr15:76398265:G:A	rs12907805	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr15	76433978	76433979	chr15:76433979:T:G	rs16968215	T	G	T	Sox1.mouse_HMG_3	3	1	-	7.137737949564457	4.973573420368034	ACAATGCCATTCA
chr15	77145554	77145555	chr15:77145555:T:C	rs12917081	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr15	77440740	77440741	chr15:77440741:A:G	rs74026913	A	G	A	Sox1.mouse_HMG_3	8	1	+	9.8629528629008	2.9541980835855797	TCACTTTCATTGC
chr15	77574905	77574906	chr15:77574906:C:A	rs78891111	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr15	77682117	77682118	chr15:77682118:G:A	rs7178761	G	A	G	Sox1.mouse_HMG_3	2	1	+	4.333599982402241	11.24235476171746	TCGATGCCATTGG
chr15	77908251	77908252	chr15:77908252:G:A	rs4325522	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr15	77908294	77908295	chr15:77908295:C:T	rs146750594	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr15	77985843	77985844	chr15:77985844:A:G	rs12372950	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.69738795812891	-2.189521549671598	TCAATGGCGTTGC
chr15	78038575	78038576	chr15:78038576:G:A	rs28591625	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr15	78075131	78075132	chr15:78075132:G:C	rs7180684	G	C	G	Sox1.mouse_HMG_3	11	1	+	3.5041042936062827	-1.0627243985132804	TCAAGTCCATCGA
chr15	78105803	78105804	chr15:78105804:G:A	rs10456	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr15	78215275	78215276	chr15:78215276:G:A	rs118042195	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr15	78267594	78267595	chr15:78267595:T:C	rs12442418	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr15	78276469	78276470	chr15:78276470:G:A	rs568049847	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr15	78358872	78358873	chr15:78358873:G:A	rs4887042	G	A	A	Sox1.mouse_HMG_3	1	1	-	6.516805912305786	1.5585336811921588	TCAATAACATTTT
chr15	78358892	78358893	chr15:78358893:C:T	rs4887043	C	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr15	78402577	78402578	chr15:78402578:T:C	rs76634819	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr15	78487041	78487042	chr15:78487042:C:T	rs12904234	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr15	78599284	78599285	chr15:78599285:G:A	rs12910984	G	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr15	78740729	78740730	chr15:78740730:A:G	rs113991567	A	G	N	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr15	78819174	78819175	chr15:78819175:A:G	rs11072807	A	G	a	Sox1.mouse_HMG_3	10	1	-	3.782199044542095	-0.8530137512625189	ACACTTCCAGTGC
chr15	79012127	79012128	chr15:79012128:G:A	rs8025124	G	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr15	79096950	79096951	chr15:79096951:C:T	rs78496982	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	79244417	79244418	chr15:79244418:T:C	rs4147510	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr15	79359104	79359105	chr15:79359105:A:C	rs872287	A	C	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	79547568	79547569	chr15:79547569:C:T	rs7181421	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr15	79609525	79609526	chr15:79609526:T:C	rs16971151	T	C	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr15	79762616	79762617	chr15:79762617:A:G	rs28621503	A	G	-	Sox1.mouse_HMG_3	9	1	-	6.440800187721386	-0.44610932007912196	TCAATACCCTTGT
chr15	79968529	79968530	chr15:79968530:G:A	rs67760360	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr15	80058826	80058827	chr15:80058827:T:C	rs2461649	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr15	80200266	80200267	chr15:80200267:C:T	rs75884791	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr15	80200269	80200270	chr15:80200270:A:G	rs561661246	A	G	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr15	80290682	80290683	chr15:80290683:C:A	rs3858957	C	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	80351705	80351706	chr15:80351706:C:T	rs28678947	C	T	c	Sox1.mouse_HMG_3	11	1	+	7.601606846726492	5.284133141238696	TCAATGACATTCT
chr15	80484251	80484252	chr15:80484252:A:G	rs61144989	A	G	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr15	80811445	80811446	chr15:80811446:A:G	rs73497055	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr15	80986348	80986349	chr15:80986349:T:C	rs11072970	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.0158375909427	-0.8710719168578074	TCTATAGCATTGT
chr15	81000242	81000243	chr15:81000243:A:G	rs144166198	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr15	81089646	81089647	chr15:81089647:A:G	rs868954	A	G	A	Sox1.mouse_HMG_3	9	1	-	10.702820616524452	3.8159111087239457	TCAAAAGCATTGA
chr15	81184646	81184647	chr15:81184647:C:T	rs1509557	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr15	81185330	81185331	chr15:81185331:T:C	rs17337055	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr15	81219232	81219233	chr15:81219233:C:T	rs76444422	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr15	81318560	81318561	chr15:81318561:T:C	rs4617815	T	C	C	Sox1.mouse_HMG_3	9	1	+	9.078190232521036	2.1912807247205293	TCACTGCCATTGG
chr15	81335386	81335387	chr15:81335387:A:G	rs61112061	A	G	A	Sox1.mouse_HMG_3	9	1	-	10.098835773901278	3.2119262661007713	ACAATAGCATTGT
chr15	81335393	81335394	chr15:81335394:T:C	rs116750573	T	C	T	Sox1.mouse_HMG_3	2	1	-	10.098835773901278	3.1900809945860575	ACAATAGCATTGT
chr15	81362195	81362196	chr15:81362196:C:T	rs7164804	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr15	81410479	81410480	chr15:81410480:G:T	rs967376194	G	T	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr15	81410511	81410512	chr15:81410512:C:G	rs12101997	C	G	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr15	81412349	81412350	chr15:81412350:T:C	rs148807148	T	C	T	Sox1.mouse_HMG_3	9	1	+	3.5617115181433268	-3.325197989657181	TCACCTCCATTGT
chr15	81752189	81752190	chr15:81752190:A:G	rs16973117	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr15	81754789	81754790	chr15:81754790:C:T	rs7167606	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr15	81930865	81930866	chr15:81930866:C:G	rs12437922	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr15	82083020	82083021	chr15:82083021:T:C	rs76698881	T	C	T	Sox1.mouse_HMG_3	6	1	-	10.015047888797637	9.538531949142415	TCAATGACATTCA
chr15	82085533	82085534	chr15:82085534:A:G	rs2665089	A	G	G	Sox1.mouse_HMG_3	8	1	-	5.457403929529018	5.457403929529018	TCACTGCCTTTGA
chr15	82095609	82095610	chr15:82095610:G:C	rs1969090	G	C	C	Sox1.mouse_HMG_3	12	1	-	4.924195885643169	4.135445313137815	ACAATGTCAGTGC
chr15	82133523	82133524	chr15:82133524:A:G	rs66904072	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr15	82136255	82136256	chr15:82136256:C:A	rs77541858	C	A	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr15	82347746	82347747	chr15:82347747:C:T	rs2277569	C	T	N	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr15	83286783	83286784	chr15:83286784:A:G	rs55893521	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr15	83733444	83733445	chr15:83733445:A:G	rs10162825	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr15	84630409	84630410	chr15:84630410:A:G	rs73449310	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr15	84714367	84714368	chr15:84714368:G:A	rs34900908	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr15	84853035	84853036	chr15:84853036:T:G	chr15:84853036:T:G	T	G	T	Sox1.mouse_HMG_3	2	1	-	4.605918458013345	-2.3028363213018745	TCAGTTCTATTGA
chr15	84853039	84853040	chr15:84853040:G:C	chr15:84853040:G:C	G	C	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr15	85314258	85314259	chr15:85314259:G:A	rs114132550	G	A	g	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr15	85314287	85314288	chr15:85314288:C:T	rs151220798	C	T	c	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr15	85354590	85354591	chr15:85354591:T:C	rs72748866	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr15	85354623	85354624	chr15:85354624:C:T	rs41465044	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	85379357	85379358	chr15:85379358:G:C	rs7496211	G	C	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr15	85379384	85379385	chr15:85379385:T:G	rs12595503	T	G	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr15	85383314	85383315	chr15:85383315:C:T	rs7180683	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr15	85579738	85579739	chr15:85579739:T:C	rs17557307	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr15	85626119	85626120	chr15:85626120:A:G	rs71397886	A	G	A	Sox1.mouse_HMG_3	4	1	-	9.907404991944293	3.007308970329648	TCAATGTCATTAA
chr15	85630378	85630379	chr15:85630379:G:A	rs453823	G	A	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr15	85630401	85630402	chr15:85630402:C:T	rs11635587	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr15	85780519	85780520	chr15:85780520:G:A	rs72751891	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr15	85780545	85780546	chr15:85780546:C:T	rs60635633	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr15	85782892	85782893	chr15:85782893:A:C	rs12916187	A	C	A	Sox1.mouse_HMG_3	8	1	+	5.268339517231407	-1.640415262083813	TCAAGGACATTGT
chr15	87219817	87219818	chr15:87219818:C:A	rs17811219	C	A	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr15	87689358	87689359	chr15:87689359:T:C	rs4271562	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr15	88048298	88048299	chr15:88048299:C:A	rs28565987	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr15	88367585	88367586	chr15:88367586:T:C	rs17186688	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.633725121504984	-2.1673020404120202	TCAATGTCATTTC
chr15	88386694	88386695	chr15:88386695:T:A	rs16941772	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.901784410089709	-2.006970369225511	ACAATTGCACTGA
chr15	88674865	88674866	chr15:88674866:G:C	rs35264514	G	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr15	88709211	88709212	chr15:88709212:C:T	rs62025594	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr15	88728209	88728210	chr15:88728210:A:G	rs77659506	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr15	88844672	88844673	chr15:88844673:A:G	rs11630187	A	G	a	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	88936930	88936931	chr15:88936931:T:C	rs35760425	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.221865225770653	0.3217692041560061	ACAATTGCATTCA
chr15	89118514	89118515	chr15:89118515:T:G	rs293372	T	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	89675930	89675931	chr15:89675931:C:T	rs80350711	C	T	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr15	90105293	90105294	chr15:90105294:C:T	rs11073900	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr15	90348382	90348383	chr15:90348383:G:A	rs6496665	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr15	90419393	90419394	chr15:90419394:C:T	rs2526000	C	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr15	90556381	90556382	chr15:90556382:A:G	rs56852223	A	G	A	Sox1.mouse_HMG_3	6	1	-	5.847947502820089	6.361025317930558	TAAATATCATTGC
chr15	90556405	90556406	chr15:90556406:A:G	rs11073935	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr15	90766093	90766094	chr15:90766094:G:A	rs3784781	G	A	.	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr15	90788315	90788316	chr15:90788316:G:A	rs7175811	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr15	90994700	90994701	chr15:90994701:G:T	chr15:90994701:G:T	G	T	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr15	90994703	90994704	chr15:90994704:A:G	rs1212627259	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr15	91218769	91218770	chr15:91218770:A:G	rs8043369	A	G	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr15	91329480	91329481	chr15:91329481:G:T	rs7170688	G	T	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr15	91479427	91479428	chr15:91479428:A:G	rs4522399	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	91536802	91536803	chr15:91536803:A:C	rs1323925117	A	C	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr15	91738802	91738803	chr15:91738803:C:T	rs71411108	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr15	91887530	91887531	chr15:91887531:T:C	rs1329247985	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.311867091926922	-1.5750424158735858	TCATTTTCATTGT
chr15	91908775	91908776	chr15:91908776:C:T	rs893328898	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	92117543	92117544	chr15:92117544:C:T	rs117446014	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr15	92128025	92128026	chr15:92128026:A:G	rs2190750	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr15	92143114	92143115	chr15:92143115:A:C	rs28480636	A	C	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr15	92294865	92294866	chr15:92294866:T:C	rs8030602	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr15	92469326	92469327	chr15:92469327:C:T	rs17522085	C	T	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr15	92546108	92546109	chr15:92546109:C:T	rs1378599	C	T	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr15	92565389	92565390	chr15:92565390:C:T	rs35424208	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr15	92575135	92575136	chr15:92575136:T:A	rs417297	T	A	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	92725925	92725926	chr15:92725926:G:C	rs8041556	G	C	c	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr15	93088161	93088162	chr15:93088162:T:C	rs117006841	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr15	93088169	93088170	chr15:93088170:A:T	rs62045493	A	T	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr15	93088176	93088177	chr15:93088177:C:G	rs112306026	C	G	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr15	93088211	93088212	chr15:93088212:T:C	rs73460353	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr15	93111443	93111444	chr15:93111444:C:A	rs8025252	C	A	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr15	93133914	93133915	chr15:93133915:T:C	rs17649498	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr15	93193644	93193645	chr15:93193645:T:G	rs6416581	T	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr15	93250323	93250324	chr15:93250324:T:C	rs936677	T	C	C	Sox1.mouse_HMG_3	9	1	+	5.233157863379317	-1.6537516444211915	TCAATTTGATTGT
chr15	93284868	93284869	chr15:93284869:C:T	rs4777643	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr15	93317919	93317920	chr15:93317920:G:T	rs74029345	G	T	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr15	93467842	93467843	chr15:93467843:A:G	rs56858454	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr15	93546627	93546628	chr15:93546628:A:G	rs2130111	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.246972851685104	-0.5540543102319009	TCAATGACAGTCA
chr15	93563489	93563490	chr15:93563490:A:G	rs12443264	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.954513110903857	-0.846514051013147	TCAATAGCATTTC
chr15	93861131	93861132	chr15:93861132:C:T	rs34819625	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.45740392952902	0.4991316984153935	TCGCTGCCATTGA
chr15	94022591	94022592	chr15:94022592:T:G	rs12591276	T	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr15	94076013	94076014	chr15:94076014:G:A	rs7169001	G	A	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr15	94369754	94369755	chr15:94369755:G:A	rs3784654	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr15	94397821	94397822	chr15:94397822:A:G	rs8042590	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.149968914391216	-1.736940593409291	TCAATAGCATAGG
chr15	94606108	94606109	chr15:94606109:C:T	rs80135573	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr15	94694989	94694990	chr15:94694990:T:C	rs12440540	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.2041394745287075	-1.6480396675645774	TCAATTTCCTTGT
chr15	94889271	94889272	chr15:94889272:A:C	rs4372639	A	C	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr15	95076076	95076077	chr15:95076077:C:T	rs59059558	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr15	95076113	95076114	chr15:95076114:C:T	rs57534978	C	T	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr15	95346950	95346951	chr15:95346951:A:G	rs149707380	A	G	A	Sox1.mouse_HMG_3	9	1	+	5.563376477249927	8.682210947937902	TCACTTGCAATGA
chr15	95880654	95880655	chr15:95880655:C:T	rs74533182	C	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr15	96234697	96234698	chr15:96234698:C:G	rs2577020	C	G	C	Sox1.mouse_HMG_3	1	1	+	6.0158375909427	-0.8869151964166428	TCGATAGCATTGT
chr15	96327587	96327588	chr15:96327588:A:G	rs3743462	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr15	96347980	96347981	chr15:96347981:T:C	rs28373067	T	C	T	Sox1.mouse_HMG_3	0	1	+	4.357207390252109	-2.4949717518411765	TCACTAAGATTGT
chr15	96410861	96410862	chr15:96410862:G:A	rs7170620	G	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr15	96786535	96786536	chr15:96786536:T:C	rs28506996	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr15	97370726	97370727	chr15:97370727:T:C	rs73466159	T	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr15	97655095	97655096	chr15:97655096:T:C	rs78723158	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.685655977609173	-2.2230988017060462	TCAATAGCAGTTA
chr15	97692127	97692128	chr15:97692128:C:T	rs78717104	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr15	97993827	97993828	chr15:97993828:C:A	rs902623	C	A	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr15	97993828	97993829	chr15:97993829:A:G	rs902624	A	G	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr15	98019099	98019100	chr15:98019100:C:T	rs146033414	C	T	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr15	98019100	98019101	chr15:98019101:G:A	rs62023746	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr15	98127693	98127694	chr15:98127694:C:T	rs28449535	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr15	98155622	98155623	chr15:98155623:C:T	rs55869720	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr15	98323421	98323422	chr15:98323422:C:A	rs2120027	C	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr15	98520175	98520176	chr15:98520176:A:G	rs7176797	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr15	98661253	98661254	chr15:98661254:T:C	rs6598539	T	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr15	99143359	99143360	chr15:99143360:C:G	rs55752512	C	G	C	Sox1.mouse_HMG_3	3	1	+	4.480226719904298	-0.1566359128162842	ACACAGGCATTGA
chr15	99395755	99395756	chr15:99395756:G:A	rs57643757	G	A	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr15	99712102	99712103	chr15:99712103:T:G	rs60066240	T	G	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr15	99762987	99762988	chr15:99762988:T:C	rs2958986	T	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr15	99918269	99918270	chr15:99918270:T:C	rs2727146	T	C	T	Sox1.mouse_HMG_3	10	1	+	3.7745549577001456	-0.860657838104468	TCACCAGCATTGC
chr15	99918275	99918276	chr15:99918276:G:C	rs2573614	G	C	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr15	99963798	99963799	chr15:99963799:G:C	rs55920749	G	C	g	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr15	99963808	99963809	chr15:99963809:A:C	rs56103220	A	C	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr15	99967041	99967042	chr15:99967042:T:C	rs2727172	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr15	99992661	99992662	chr15:99992662:C:T	rs2573606	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr15	100061532	100061533	chr15:100061533:T:C	rs58179995	T	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr15	100079677	100079678	chr15:100079678:C:G	rs10152483	C	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr15	100149942	100149943	chr15:100149943:A:G	rs2035344	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr15	100372102	100372103	chr15:100372103:A:T	rs12439237	A	T	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr15	100439596	100439597	chr15:100439597:A:T	rs74718050	A	T	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr15	100517928	100517929	chr15:100517929:C:G	rs11247215	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr15	100529942	100529943	chr15:100529943:A:G	rs8027496	A	G	G	Sox1.mouse_HMG_3	11	1	+	5.781282069124561	9.891122500110459	TCAAATTCATTAA
chr15	100529959	100529960	chr15:100529960:C:G	rs57737119	C	G	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr15	100592908	100592909	chr15:100592909:T:C	rs12594388	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr15	100795273	100795274	chr15:100795274:C:T	rs8036060	C	T	T	Sox1.mouse_HMG_3	3	1	+	5.823880418251601	1.18701778553102	ACACTGACAGTGA
chr15	100850080	100850081	chr15:100850081:A:G	rs28621749	A	G	a	Sox1.mouse_HMG_3	9	1	-	10.729276946606989	3.8423674388064835	TCAATGTCATTGG
chr15	100850100	100850101	chr15:100850101:A:G	rs115302369	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr15	100968601	100968602	chr15:100968602:T:A	rs4965748	T	A	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr15	101011663	101011664	chr15:101011664:T:A	rs6598413	T	A	A	Sox1.mouse_HMG_3	12	1	+	5.41791463900851	7.831355681079655	TCACTGGCATTAT
chr15	101041742	101041743	chr15:101041743:C:T	rs12592627	C	T	c	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr15	101055474	101055475	chr15:101055475:G:A	rs8041944	G	A	G	Sox1.mouse_HMG_3	11	1	+	6.600081147996137	2.4902407170102396	TCAGTAACATTGT
chr15	101305875	101305876	chr15:101305876:C:T	rs2624980	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr15	101318889	101318890	chr15:101318890:G:A	rs28469755	G	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr15	101370305	101370306	chr15:101370306:A:C	rs2073591	A	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr15	101451741	101451742	chr15:101451742:C:T	rs7173205	C	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr15	101500612	101500613	chr15:101500613:A:G	rs2898886	A	G	A	Sox1.mouse_HMG_3	4	1	-	6.037788346594212	-0.8623076750204344	TCAGTAGCATTGC
chr15	101546117	101546118	chr15:101546118:T:C	rs55714469	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr15	101552591	101552592	chr15:101552592:C:G	rs11638504	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr15	101654831	101654832	chr15:101654832:A:C	rs626073	A	C	C	Sox1.mouse_HMG_3	6	1	+	5.908076900706774	5.856523557830236	TCACTAATATTAA
chr16	146990	146991	chr16:146991:G:A	rs79724257	G	A	g	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	455604	455605	chr16:455605:T:C	rs80324424	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	630808	630809	chr16:630809:C:G	rs4984904	C	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr16	642315	642316	chr16:642316:G:A	rs149842174	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr16	646169	646170	chr16:646170:G:A	rs145347721	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	646197	646198	chr16:646198:C:A	rs73487407	C	A	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr16	892203	892204	chr16:892204:A:G	rs11860532	A	G	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr16	1064257	1064258	chr16:1064258:A:G	rs213658	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr16	1137732	1137733	chr16:1137733:G:A	rs117540024	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr16	1140654	1140655	chr16:1140655:T:C	rs8044890	T	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	1432005	1432006	chr16:1432006:T:G	rs4984838	T	G	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr16	2407498	2407499	chr16:2407499:G:T	rs66496842	G	T	-	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	2592002	2592003	chr16:2592003:C:G	rs12447555	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr16	2679932	2679933	chr16:2679933:G:C	rs112436312	G	C	N	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	2835677	2835678	chr16:2835678:A:G	rs75106776	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr16	2835692	2835693	chr16:2835693:A:G	rs76693058	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr16	2868341	2868342	chr16:2868342:G:A	rs115946633	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr16	2928442	2928443	chr16:2928443:A:C	rs111624331	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr16	3135735	3135736	chr16:3135736:T:C	rs560947	T	C	C	Sox1.mouse_HMG_3	5	1	-	13.349554967036607	12.116882195969517	TCAATACCATTGT
chr16	3154271	3154272	chr16:3154272:A:C	rs35137725	A	C	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr16	3177883	3177884	chr16:3177884:G:A	rs7205923	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	3373647	3373648	chr16:3373648:T:G	rs37800	T	G	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr16	3519129	3519130	chr16:3519130:C:T	rs17198722	C	T	C	Sox1.mouse_HMG_3	6	1	+	2.97857730070551	2.465499485595039	GCACTACCAGTGA
chr16	3782469	3782470	chr16:3782470:A:G	rs130021	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.8543620560051846	-1.0543927233100356	ACAAAAACATTGC
chr16	4103387	4103388	chr16:4103388:C:T	rs449848	C	T	T	Sox1.mouse_HMG_3	3	1	+	5.8564543515812595	1.2195917188606782	ACACTTGCAGTGA
chr16	4147994	4147995	chr16:4147995:T:G	rs1076255	T	G	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	4452512	4452513	chr16:4452513:C:T	rs6500606	C	T	T	Sox1.mouse_HMG_3	6	1	+	3.5617115181433268	3.048633703032856	TCACTTCCATGGT
chr16	4500451	4500452	chr16:4500452:T:C	rs17884699	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.7918239202432105	-2.0950855875572967	ACTATTTCATTGA
chr16	4705106	4705107	chr16:4705107:G:A	rs78074706	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr16	4771696	4771697	chr16:4771697:T:C	rs12444397	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr16	4870096	4870097	chr16:4870097:C:A	rs45553841	C	A	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr16	4882657	4882658	chr16:4882658:G:A	rs1049223	G	A	g	Sox1.mouse_HMG_3	9	1	+	5.092168184635874	1.9733337139478995	TAAATACCAGTGA
chr16	4913439	4913440	chr16:4913440:T:A	rs141191494	T	A	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr16	4913456	4913457	chr16:4913457:T:C	rs12444913	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr16	5557916	5557917	chr16:5557917:A:G	rs55646071	A	G	G	Sox1.mouse_HMG_3	3	1	+	4.700076471124824	-2.1009506907921827	ACAATGACAGTGG
chr16	5590263	5590264	chr16:5590264:C:T	rs8053659	C	T	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr16	5590274	5590275	chr16:5590275:G:T	rs8052571	G	T	G	Sox1.mouse_HMG_3	6	1	+	12.450285985050433	12.362170766718648	TCACTTGCATTGA
chr16	5607638	5607639	chr16:5607639:G:A	rs12935306	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr16	5779438	5779439	chr16:5779439:C:T	rs7198618	C	T	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr16	5794479	5794480	chr16:5794480:C:G	rs55774086	C	G	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr16	6250449	6250450	chr16:6250450:G:T	rs62015142	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr16	6298239	6298240	chr16:6298240:G:A	rs34406606	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr16	6364013	6364014	chr16:6364014:C:T	rs75110114	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr16	6414932	6414933	chr16:6414933:C:G	rs138552264	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr16	6483397	6483398	chr16:6483398:T:C	rs1379740523	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.790721388167228	-1.0614577539260563	TCATTTACATTGC
chr16	6631878	6631879	chr16:6631879:A:G	rs62015542	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	6947566	6947567	chr16:6947567:T:C	rs72774217	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr16	7157082	7157083	chr16:7157083:A:G	rs149344958	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr16	7398208	7398209	chr16:7398209:A:G	rs74012549	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr16	7745276	7745277	chr16:7745277:G:A	rs74331698	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr16	7839589	7839590	chr16:7839590:A:C	rs62019986	A	C	C	Sox1.mouse_HMG_3	5	1	+	4.928874376057806	0.392886922958414	TCAATACCAGTCC
chr16	7871679	7871680	chr16:7871680:G:T	rs11648513	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr16	8356079	8356080	chr16:8356080:A:G	rs775837803	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr16	8391559	8391560	chr16:8391560:C:T	rs114352031	C	T	C	Sox1.mouse_HMG_3	7	1	+	7.966320139144294	4.333852648049101	TTAATAGCATTGT
chr16	8500490	8500491	chr16:8500491:A:T	rs9921138	A	T	A	Sox1.mouse_HMG_3	2	1	+	10.472036149931302	3.5632813706160835	TCAATGACATTAA
chr16	8620762	8620763	chr16:8620763:A:G	rs7195689	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr16	8667834	8667835	chr16:8667835:G:A	rs11861023	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	8683769	8683770	chr16:8683770:C:A	rs66839842	C	A	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	8683786	8683787	chr16:8683787:T:G	rs35896679	T	G	T	Sox1.mouse_HMG_3	10	1	-	5.230432496397912	7.495315722207945	TCAATACTATAGA
chr16	8862845	8862846	chr16:8862846:G:A	rs254945	G	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr16	8949357	8949358	chr16:8949358:T:C	rs7192015	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr16	8961926	8961927	chr16:8961927:T:C	rs139826487	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.407886477730614	0.5209769699301054	TTACTGCCATTGA
chr16	9010624	9010625	chr16:9010625:G:A	rs35614103	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr16	9068451	9068452	chr16:9068452:C:T	rs35874364	C	T	c	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr16	9123056	9123057	chr16:9123057:C:T	rs12925781	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr16	9216023	9216024	chr16:9216024:C:T	rs2965869	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr16	9309724	9309725	chr16:9309725:C:T	rs3909919	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	9413029	9413030	chr16:9413030:A:G	rs191149099	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr16	9484396	9484397	chr16:9484397:A:G	rs4780443	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.446802179677261	-0.4401073281232468	TGAATACCATTGT
chr16	9677417	9677418	chr16:9677418:A:T	rs60158444	A	T	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr16	9712893	9712894	chr16:9712894:T:C	rs28372311	T	C	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr16	10093959	10093960	chr16:10093960:G:A	rs17683096	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr16	10121213	10121214	chr16:10121214:T:C	rs1078695	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.464182695628434	-1.435913325986213	ACAGTTACATTGA
chr16	10676683	10676684	chr16:10676684:G:A	rs1079016	G	A	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr16	10889075	10889076	chr16:10889076:G:A	rs34033173	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr16	10957185	10957186	chr16:10957186:A:G	rs34033347	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr16	11296701	11296702	chr16:11296702:G:A	rs57831720	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr16	11297332	11297333	chr16:11297333:G:C	rs1874021	G	C	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr16	11367923	11367924	chr16:11367924:G:C	rs78544881	G	C	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr16	11384290	11384291	chr16:11384291:A:G	rs1139052	A	G	A	Sox1.mouse_HMG_3	2	1	+	3.9282497846899855	-2.9805049946252353	TCATTGTCATTGG
chr16	11396912	11396913	chr16:11396913:G:A	rs11639830	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr16	11475597	11475598	chr16:11475598:A:G	rs9936203	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.259680759530836	0.6244679637262214	TCCATGACATTGT
chr16	11613311	11613312	chr16:11613312:A:G	rs9922730	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr16	11687504	11687505	chr16:11687505:C:G	rs77314133	C	G	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr16	11741468	11741469	chr16:11741469:G:C	rs151065717	G	C	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr16	11836445	11836446	chr16:11836446:G:A	rs139093183	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	11836479	11836480	chr16:11836480:C:A	rs3743590	C	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr16	11950666	11950667	chr16:11950667:A:G	chr16:11950667:A:G	A	G	a	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr16	11964356	11964357	chr16:11964357:T:C	rs10451085	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr16	11964378	11964379	chr16:11964379:C:A	rs10451099	C	A	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	11986684	11986685	chr16:11986685:A:C	rs434455	A	C	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr16	12064967	12064968	chr16:12064968:C:T	rs17216341	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr16	12064990	12064991	chr16:12064991:A:C	rs9806955	A	C	C	Sox1.mouse_HMG_3	6	1	+	5.361668538285041	5.310115195408503	TCACTGACAGTGG
chr16	12083869	12083870	chr16:12083870:G:C	rs350262	G	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	12095925	12095926	chr16:12095926:G:A	rs565665946	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	12148009	12148010	chr16:12148010:G:C	rs78415362	G	C	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	12148015	12148016	chr16:12148016:G:C	rs350224	G	C	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr16	12154999	12155000	chr16:12155000:C:T	rs7501241	C	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr16	12211909	12211910	chr16:12211910:G:A	rs709424	G	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr16	12214688	12214689	chr16:12214689:C:A	rs34896667	C	A	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr16	12289967	12289968	chr16:12289968:C:T	chr16:12289968:C:T	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	12289978	12289979	chr16:12289979:C:T	rs137964461	C	T	C	Sox1.mouse_HMG_3	5	1	-	5.772327075375063	7.004999846442152	ACACTGCCAGTGA
chr16	12547062	12547063	chr16:12547063:T:C	rs12598530	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	12577140	12577141	chr16:12577141:C:T	rs12172838	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr16	12647278	12647279	chr16:12647279:C:G	rs16960380	C	G	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr16	12647316	12647317	chr16:12647317:C:T	rs76342576	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr16	12707568	12707569	chr16:12707569:T:C	rs1346491	T	C	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	12759331	12759332	chr16:12759332:C:T	rs3859029	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr16	12826639	12826640	chr16:12826640:T:C	rs10775290	T	C	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr16	12940674	12940675	chr16:12940675:A:G	rs74896783	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	13045989	13045990	chr16:13045990:T:C	rs9924679	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.73906256115389	-1.1696922181613296	TCAATTCCACTGT
chr16	13216918	13216919	chr16:13216919:C:A	rs56396226	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	13316595	13316596	chr16:13316596:T:A	rs176074	T	A	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr16	13428424	13428425	chr16:13428425:G:C	rs17179855	G	C	G	Sox1.mouse_HMG_3	11	1	+	10.455753658097468	5.888924965977905	TCAAATACATTGA
chr16	13438192	13438193	chr16:13438193:C:G	rs72771675	C	G	C	Sox1.mouse_HMG_3	7	1	+	5.137719535556537	-1.7420168549080741	TCAATAACTGTGA
chr16	13865749	13865750	chr16:13865750:T:C	rs231131	T	C	T	Sox1.mouse_HMG_3	9	1	+	11.179336556179674	4.292427048379167	TCAAAAACATTGA
chr16	14111978	14111979	chr16:14111979:G:A	rs1122454	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr16	14282385	14282386	chr16:14282386:G:A	rs30240	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr16	15036082	15036083	chr16:15036083:C:T	rs3198697	C	T	.	Sox1.mouse_HMG_3	7	1	+	4.4775347369678915	0.8450672458726987	TCAGTCACATTGA
chr16	15485079	15485080	chr16:15485080:C:T	rs72774892	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr16	15550880	15550881	chr16:15550881:G:T	rs62036867	G	T	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr16	15572656	15572657	chr16:15572657:C:T	rs116889381	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr16	15649891	15649892	chr16:15649892:G:A	rs142392293	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr16	15824842	15824843	chr16:15824843:G:A	rs2633506	G	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr16	15985343	15985344	chr16:15985344:T:C	rs1874001	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr16	16120014	16120015	chr16:16120015:G:A	rs2238476	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	17212803	17212804	chr16:17212804:C:T	rs2311139	C	T	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr16	17278505	17278506	chr16:17278506:C:G	rs139368590	C	G	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr16	17292977	17292978	chr16:17292978:C:T	rs7206651	C	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr16	17343895	17343896	chr16:17343896:C:G	rs113712355	C	G	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr16	17343912	17343913	chr16:17343913:A:G	rs7185284	A	G	A	Sox1.mouse_HMG_3	9	1	-	3.8265241592476467	-3.0603853485528614	TAAATGTCATTGG
chr16	17370185	17370186	chr16:17370186:G:A	rs117001239	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	17386668	17386669	chr16:17386669:A:G	rs6498698	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr16	17453443	17453444	chr16:17453444:T:G	rs28608850	T	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	17497632	17497633	chr16:17497633:C:T	rs74014013	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	17595533	17595534	chr16:17595534:G:A	rs4310839	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr16	17692102	17692103	chr16:17692103:G:A	rs12448129	G	A	g	Sox1.mouse_HMG_3	9	1	-	5.73906256115389	12.625972068954397	TCAATTCCACTGT
chr16	17828130	17828131	chr16:17828131:G:A	rs28507396	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr16	18019386	18019387	chr16:18019387:T:C	rs72773656	T	C	T	Sox1.mouse_HMG_3	10	1	+	8.90579457266907	4.270581776864455	TCAATAACTTTGA
chr16	18743871	18743872	chr16:18743872:C:A	rs7206538	C	A	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr16	18771851	18771852	chr16:18771852:T:C	rs7194624	T	C	-	Sox1.mouse_HMG_3	3	1	-	7.877064020167811	1.076036858250805	ACAAAAGCATTGA
chr16	18790473	18790474	chr16:18790474:G:C	rs188637972	G	C	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr16	18835106	18835107	chr16:18835107:G:A	rs56079655	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.479249201043732	1.8467817099485389	TCACTGCCACTGA
chr16	18866797	18866798	chr16:18866798:T:C	rs11648912	T	C	-	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr16	19378492	19378493	chr16:19378493:T:C	rs7192694	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr16	19522443	19522444	chr16:19522444:G:A	rs1194735147	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr16	19804760	19804761	chr16:19804761:G:A	rs148818991	G	A	G	Sox1.mouse_HMG_3	9	1	+	6.755723333567431	3.6368888628794562	ACAATACCAGTGT
chr16	19881856	19881857	chr16:19881857:G:T	rs79155407	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr16	20381009	20381010	chr16:20381010:G:A	rs77924615	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr16	20711313	20711314	chr16:20711314:A:G	rs56139896	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr16	20726826	20726827	chr16:20726827:C:G	rs13337674	C	G	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr16	21063044	21063045	chr16:21063045:C:T	rs76178045	C	T	C	Sox1.mouse_HMG_3	11	1	-	3.993352513680675	-0.11648791730522268	TCAAAACCATCGC
chr16	21527028	21527029	chr16:21527029:G:A	rs545205	G	A	.	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr16	21527065	21527066	chr16:21527066:G:A	chr16:21527066:G:A	G	A	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr16	21527065	21527066	chr16:21527066:G:C	rs740592	G	C	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr16	21637563	21637564	chr16:21637564:C:T	rs577184067	C	T	c	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr16	21721514	21721515	chr16:21721515:A:G	rs8060224	A	G	a	Sox1.mouse_HMG_3	3	1	+	5.29517235308859	-1.5058548088284156	TCAATAATACTGA
chr16	21727665	21727666	chr16:21727666:G:C	rs7184989	G	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr16	21727670	21727671	chr16:21727671:G:A	rs12934324	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr16	22638085	22638086	chr16:22638086:A:C	rs979583	A	C	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr16	22639887	22639888	chr16:22639888:G:A	rs382106	G	A	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr16	22963553	22963554	chr16:22963554:A:C	rs2519981	A	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr16	23036069	23036070	chr16:23036070:A:C	rs11074538	A	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr16	23038523	23038524	chr16:23038524:C:T	rs977929	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr16	23174865	23174866	chr16:23174866:C:T	rs530940821	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr16	23514826	23514827	chr16:23514827:A:G	rs145948178	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr16	23705445	23705446	chr16:23705446:T:C	rs7199034	T	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	23891810	23891811	chr16:23891811:A:G	rs3785397	A	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr16	23891834	23891835	chr16:23891835:G:T	rs3785396	G	T	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr16	23943077	23943078	chr16:23943078:A:G	rs195995	A	G	A	Sox1.mouse_HMG_3	0	1	-	4.69738795812891	-2.1547911839643747	TCCATGGCATTGC
chr16	23951514	23951515	chr16:23951515:C:A	rs7199531	C	A	A	Sox1.mouse_HMG_3	7	1	+	4.3712420522983635	-0.9192591330496662	TCAACTCCAGTGA
chr16	23999474	23999475	chr16:23999475:A:G	rs7201380	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	24014523	24014524	chr16:24014524:C:A	rs56886642	C	A	C	Sox1.mouse_HMG_3	10	1	-	3.0526216451584465	9.952717666773093	TCACTGCCATGGT
chr16	24021894	24021895	chr16:24021895:G:A	rs9926282	G	A	g	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	24114416	24114417	chr16:24114417:T:C	rs28603301	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr16	24254851	24254852	chr16:24254852:A:C	rs2239341	A	C	A	Sox1.mouse_HMG_3	12	1	+	4.344967872505382	1.845749968687533	TAAATAACATTCA
chr16	24291371	24291372	chr16:24291372:T:C	rs117968048	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	24611690	24611691	chr16:24611691:A:T	rs2033218	A	T	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr16	24987862	24987863	chr16:24987863:A:G	rs754321430	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr16	25015419	25015420	chr16:25015420:G:T	rs543717974	G	T	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr16	25093508	25093509	chr16:25093509:T:C	rs951566348	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.081874680136799	-1.82688009917842	TCAAAACTATTGT
chr16	25093519	25093520	chr16:25093520:T:C	rs77439413	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr16	25445225	25445226	chr16:25445226:T:C	rs1034599	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr16	25851186	25851187	chr16:25851187:C:G	rs10163260	C	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr16	25963565	25963566	chr16:25963566:G:A	rs563376805	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr16	25977631	25977632	chr16:25977632:T:C	rs4238931	T	C	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr16	26017121	26017122	chr16:26017122:C:T	rs7190703	C	T	t	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr16	26505811	26505812	chr16:26505812:A:G	rs79090407	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr16	26505819	26505820	chr16:26505820:G:A	rs35991710	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr16	26883599	26883600	chr16:26883600:A:G	rs56336353	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr16	27019250	27019251	chr16:27019251:C:T	rs74747635	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr16	27174648	27174649	chr16:27174649:C:G	rs769964815	C	G	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr16	27305079	27305080	chr16:27305080:A:C	rs4547336	A	C	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr16	27427133	27427134	chr16:27427134:C:T	rs182048616	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr16	27718616	27718617	chr16:27718617:A:T	rs3816324	A	T	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr16	27978951	27978952	chr16:27978952:C:A	rs6498054	C	A	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr16	28069195	28069196	chr16:28069196:G:A	rs12926025	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr16	28125266	28125267	chr16:28125267:C:A	rs33045	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr16	28195883	28195884	chr16:28195884:T:C	rs75418231	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	28814631	28814632	chr16:28814632:A:G	rs56186137	A	G	.	Sox1.mouse_HMG_3	10	1	-	8.914453330369643	4.279240534565028	TCAAGAACATTGA
chr16	28824320	28824321	chr16:28824321:C:T	rs1426437947	C	T	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr16	28842674	28842675	chr16:28842675:A:C	rs3088215	A	C	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	29129366	29129367	chr16:29129367:T:C	rs1646129	T	C	.	Sox1.mouse_HMG_3	4	1	+	4.525454876006652	-2.3746411456079963	TCAGTTGCATTGG
chr16	29852858	29852859	chr16:29852859:G:A	rs74017638	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	30123685	30123686	chr16:30123686:G:A	rs942584110	G	A	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr16	31708405	31708406	chr16:31708406:G:T	rs3751742	G	T	g	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr16	34085344	34085345	chr16:34085345:A:G	rs112856579	A	G	.	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr16	34096286	34096287	chr16:34096287:T:A	rs1292634909	T	A	.	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr16	34572030	34572031	chr16:34572031:T:C	chr16:34572031:T:C	T	C	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr16	34572036	34572037	chr16:34572037:C:A	chr16:34572037:C:A	C	A	.	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr16	34572056	34572057	chr16:34572057:T:C	chr16:34572057:T:C	T	C	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr16	34572133	34572134	chr16:34572134:T:G	rs1193692328	T	G	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	34572397	34572398	chr16:34572398:A:G	rs1487021157	A	G	.	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr16	34572548	34572549	chr16:34572549:T:G	rs1351625427	T	G	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	34572897	34572898	chr16:34572898:A:G	rs1417537009	A	G	.	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	34572932	34572933	chr16:34572933:C:A	rs1376866378	C	A	.	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr16	34574221	34574222	chr16:34574222:T:C	rs1222614021	T	C	.	Sox1.mouse_HMG_3	12	1	-	3.5638296395907614	0.27586116326755894	TCTATTCCATTCA
chr16	34574226	34574227	chr16:34574227:G:A	rs1347717593	G	A	.	Sox1.mouse_HMG_3	7	1	-	3.5638296395907614	-0.06863785150443169	TCTATTCCATTCA
chr16	34575957	34575958	chr16:34575958:T:G	rs1462601712	T	G	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	34576041	34576042	chr16:34576042:T:A	rs1234391662	T	A	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	34576310	34576311	chr16:34576311:C:G	rs1307423481	C	G	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	34582277	34582278	chr16:34582278:G:A	chr16:34582278:G:A	G	A	.	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	34582297	34582298	chr16:34582298:T:C	rs1422875868	T	C	.	Sox1.mouse_HMG_3	3	1	-	3.5638296395907614	-3.237197522326245	TCGATTCCATTCA
chr16	34582620	34582621	chr16:34582621:G:A	rs1209659021	G	A	.	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	34582911	34582912	chr16:34582912:C:T	rs1377971971	C	T	.	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	34585323	34585324	chr16:34585324:C:G	rs1002251325	C	G	.	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr16	34585799	34585800	chr16:34585800:C:T	rs1287379349	C	T	.	Sox1.mouse_HMG_3	2	1	-	3.5638296395907614	10.47258441890598	TCGATTCCATTCA
chr16	34585837	34585838	chr16:34585838:T:C	chr16:34585838:T:C	T	C	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	34586369	34586370	chr16:34586370:C:G	rs1284827609	C	G	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr16	34586720	34586721	chr16:34586721:C:T	rs962340126	C	T	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr16	34587985	34587986	chr16:34587986:C:T	rs1265343813	C	T	.	Sox1.mouse_HMG_3	2	1	-	3.5638296395907614	10.47258441890598	TCGATTCCATTCA
chr16	34588028	34588029	chr16:34588029:T:C	chr16:34588029:T:C	T	C	.	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	34588770	34588771	chr16:34588771:T:A	rs1162521805	T	A	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	34588774	34588775	chr16:34588775:A:G	rs1402247106	A	G	.	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	34588838	34588839	chr16:34588839:A:C	rs879062942	A	C	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr16	34588931	34588932	chr16:34588932:T:C	rs1270575980	T	C	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	34589540	34589541	chr16:34589541:T:A	rs1452378687	T	A	.	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr16	34589573	34589574	chr16:34589574:G:A	rs1281613880	G	A	.	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr16	34591066	34591067	chr16:34591067:T:C	rs1463838987	T	C	.	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	34591538	34591539	chr16:34591539:T:C	rs1370721430	T	C	.	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr16	34592657	34592658	chr16:34592658:A:G	rs941592738	A	G	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	34592683	34592684	chr16:34592684:A:G	rs1267726962	A	G	.	Sox1.mouse_HMG_3	12	1	+	3.5638296395907614	0.27586116326755894	TCGATTCCATTCA
chr16	34592800	34592801	chr16:34592801:A:T	chr16:34592801:A:T	A	T	.	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	34592995	34592996	chr16:34592996:T:C	rs1010014423	T	C	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	34594251	34594252	chr16:34594252:T:A	rs904323822	T	A	.	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr16	34594482	34594483	chr16:34594483:T:C	rs1013915865	T	C	.	Sox1.mouse_HMG_3	12	1	+	8.059143376834834	7.973366515088131	TCAATTCCATTCT
chr16	34594744	34594745	chr16:34594745:G:C	rs1014156075	G	C	.	Sox1.mouse_HMG_3	6	1	+	6.759653345804093	7.184615942582777	TCAATTGCATTCG
chr16	34594768	34594769	chr16:34594769:T:C	chr16:34594769:T:C	T	C	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr16	34594942	34594943	chr16:34594943:T:G	rs1366265040	T	G	.	Sox1.mouse_HMG_3	2	1	+	3.5638296395907614	3.5638296395907614	TCTATTCCATTCA
chr16	34595603	34595604	chr16:34595604:T:C	chr16:34595604:T:C	T	C	.	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr16	34596054	34596055	chr16:34596055:C:G	rs1199747827	C	G	.	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr16	34596063	34596064	chr16:34596064:T:G	rs1228756172	T	G	.	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr16	34610273	34610274	chr16:34610274:A:G	chr16:34610274:A:G	A	G	.	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	34706720	34706721	chr16:34706721:A:G	rs1472232488	A	G	N	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr16	35731048	35731049	chr16:35731049:A:G	rs552525817	A	G	a	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	36124408	36124409	chr16:36124409:A:C	rs1316944367	A	C	.	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	36227685	36227686	chr16:36227686:A:C	rs1349588613	A	C	.	Sox1.mouse_HMG_3	2	1	+	4.867142237094981	-2.041612542220237	TCAATTCCATTTG
chr16	46380761	46380762	chr16:46380762:A:G	rs538131739	A	G	.	Sox1.mouse_HMG_3	2	1	+	4.867142237094981	-2.041612542220237	TCAATTCCATTTG
chr16	46381616	46381617	chr16:46381617:G:C	rs28810408	G	C	.	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr16	46386489	46386490	chr16:46386490:T:C	rs7187636	T	C	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr16	46387380	46387381	chr16:46387381:C:T	rs4511562	C	T	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr16	46388767	46388768	chr16:46388768:A:C	rs11859853	A	C	.	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr16	46388797	46388798	chr16:46388798:A:T	chr16:46388798:A:T	A	T	.	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr16	46389592	46389593	chr16:46389593:T:G	rs7184376	T	G	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr16	46389600	46389601	chr16:46389601:C:T	rs55860209	C	T	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	46389610	46389611	chr16:46389611:A:G	rs56342236	A	G	.	Sox1.mouse_HMG_3	6	1	-	6.6715381274723065	7.184615942582777	TCAATTTCATTCG
chr16	46390362	46390363	chr16:46390363:C:A	rs28839249	C	A	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr16	46393105	46393106	chr16:46393106:C:G	chr16:46393106:C:G	C	G	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	46393476	46393477	chr16:46393477:T:C	rs67156523	T	C	.	Sox1.mouse_HMG_3	8	1	-	3.5638296395907614	-3.34492513972446	TCGATTCCATTCA
chr16	46393577	46393578	chr16:46393578:T:C	rs1825764	T	C	.	Sox1.mouse_HMG_3	2	1	-	4.899265492609057	-2.009489286706163	CCAATTCCATTGG
chr16	46396664	46396665	chr16:46396665:C:G	rs111431998	C	G	.	Sox1.mouse_HMG_3	4	1	-	3.5724883972913335	3.5724883972913335	TCAAGTCCATTCA
chr16	46400480	46400481	chr16:46400481:T:C	rs6598763	T	C	.	Sox1.mouse_HMG_3	3	1	-	3.5638296395907614	-3.237197522326245	TCGATTCCATTCA
chr16	46400962	46400963	chr16:46400963:A:G	rs4967561	A	G	.	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr16	46400991	46400992	chr16:46400992:A:T	rs8050567	A	T	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr16	46401078	46401079	chr16:46401079:A:G	rs4967562	A	G	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	46401094	46401095	chr16:46401095:A:T	rs6598768	A	T	.	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	47905005	47905006	chr16:47905006:A:G	rs12102461	A	G	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr16	47905007	47905008	chr16:47905008:C:G	rs12102967	C	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr16	47957411	47957412	chr16:47957412:C:T	rs72802536	C	T	C	Sox1.mouse_HMG_3	3	1	+	3.402108224272905	-1.234754408447677	TCACTACCTTTGG
chr16	47979325	47979326	chr16:47979326:C:T	rs116933354	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr16	48188880	48188881	chr16:48188881:T:A	rs75882145	T	A	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr16	48555984	48555985	chr16:48555985:G:A	rs9921741	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	48612940	48612941	chr16:48612941:A:T	rs2129243	A	T	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr16	48834057	48834058	chr16:48834058:G:C	rs17762140	G	C	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr16	48845541	48845542	chr16:48845542:C:T	rs1420595	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	48898471	48898472	chr16:48898472:A:G	rs2216190	A	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr16	48972500	48972501	chr16:48972501:T:C	rs10521173	T	C	C	Sox1.mouse_HMG_3	0	1	+	5.094824950380572	-1.7573541917127131	TCAATACCAGAGA
chr16	49019689	49019690	chr16:49019690:C:T	rs66565757	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr16	49269437	49269438	chr16:49269438:G:C	rs893174	G	C	G	Sox1.mouse_HMG_3	3	1	-	8.340445554064535	3.7035829213439557	TCACTTGCATTAA
chr16	49426292	49426293	chr16:49426293:A:G	rs80270640	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.127021370482577	-1.725157771610707	TCAACTTCATTGC
chr16	49471183	49471184	chr16:49471184:G:C	rs111493592	G	C	g	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr16	49605093	49605094	chr16:49605094:C:T	rs12919547	C	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr16	49670886	49670887	chr16:49670887:C:G	rs28409311	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	49670926	49670927	chr16:49670927:G:A	rs954007387	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr16	49701514	49701515	chr16:49701515:C:G	rs62031931	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr16	50409495	50409496	chr16:50409496:C:T	rs4598913	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr16	50685252	50685253	chr16:50685253:A:G	rs117586700	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr16	51114826	51114827	chr16:51114827:G:A	rs74019911	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr16	51138611	51138612	chr16:51138612:G:A	rs77466256	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr16	51162156	51162157	chr16:51162157:T:G	rs78202217	T	G	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr16	51245144	51245145	chr16:51245145:C:T	rs7500652	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr16	51732789	51732790	chr16:51732790:G:A	rs1486440	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr16	51732795	51732796	chr16:51732796:G:A	rs1486441	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr16	51891790	51891791	chr16:51891791:T:C	rs13335019	T	C	T	Sox1.mouse_HMG_3	9	1	+	9.074202290395446	2.187292782594939	TCACTTTCATTGG
chr16	52445858	52445859	chr16:52445859:A:T	rs2075236	A	T	A	Sox1.mouse_HMG_3	1	1	+	5.637442419848352	7.581922976094068	TAAATTCCATTGC
chr16	52447036	52447037	chr16:52447037:T:C	rs78873768	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr16	52612521	52612522	chr16:52612522:C:T	rs111247364	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	52655600	52655601	chr16:52655601:A:G	rs9925027	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr16	52674289	52674290	chr16:52674290:A:G	rs12931327	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr16	52727134	52727135	chr16:52727135:A:G	rs1946142	A	G	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr16	53256911	53256912	chr16:53256912:C:G	rs1362440	C	G	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	53615255	53615256	chr16:53615256:C:T	rs8050354	C	T	T	Sox1.mouse_HMG_3	9	1	+	5.73906256115389	12.625972068954397	TCAATTCCACTGT
chr16	53615275	53615276	chr16:53615276:A:G	rs72803629	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	53923087	53923088	chr16:53923088:G:A	rs570366223	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr16	53946888	53946889	chr16:53946889:T:A	rs113964298	T	A	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr16	54066605	54066606	chr16:54066606:G:A	rs1076471	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr16	54067001	54067002	chr16:54067002:A:G	rs2075204	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.852529778905107	-2.0475662427095394	GCAATAACATTAA
chr16	54067018	54067019	chr16:54067019:C:T	rs13338113	C	T	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	54175178	54175179	chr16:54175179:C:T	rs527778583	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr16	54370179	54370180	chr16:54370180:G:A	rs80227516	G	A	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr16	54430305	54430306	chr16:54430306:G:T	rs7189231	G	T	T	Sox1.mouse_HMG_3	0	1	-	3.60962839766469	7.636050943401331	CCACTTCCATTGT
chr16	54817622	54817623	chr16:54817623:C:T	rs144866952	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	54817965	54817966	chr16:54817966:C:G	rs6499721	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr16	54927597	54927598	chr16:54927598:G:T	rs146956739	G	T	G	Sox1.mouse_HMG_3	11	1	+	5.147520323585232	-1.7367820740221283	ACAATACAATTGC
chr16	54953661	54953662	chr16:54953662:A:C	rs8054030	A	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr16	55044537	55044538	chr16:55044538:G:A	rs936879	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr16	55076029	55076030	chr16:55076030:C:A	rs7198804	C	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr16	55321867	55321868	chr16:55321868:C:T	rs115881607	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr16	55327580	55327581	chr16:55327581:C:T	rs31082	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr16	55442581	55442582	chr16:55442582:A:T	rs11647081	A	T	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	55747521	55747522	chr16:55747522:T:C	rs9937399	T	C	t	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	55781609	55781610	chr16:55781610:T:G	rs28409947	T	G	T	Sox1.mouse_HMG_3	0	1	+	11.19616731698819	4.343988174894903	TCAATACCATTCA
chr16	55811540	55811541	chr16:55811541:C:T	rs151069757	C	T	c	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr16	55875357	55875358	chr16:55875358:T:A	rs7188305	T	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr16	56121805	56121806	chr16:56121806:C:T	rs7202833	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr16	56535015	56535016	chr16:56535016:T:C	rs600390	T	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr16	56647675	56647676	chr16:56647676:G:A	rs12932184	G	A	.	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	56673465	56673466	chr16:56673466:A:G	rs34984270	A	G	.	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr16	57018071	57018072	chr16:57018072:C:A	rs16965070	C	A	t	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr16	57047114	57047115	chr16:57047115:G:T	rs289724	G	T	T	Sox1.mouse_HMG_3	11	1	+	5.2259847460434194	-1.6583176515639395	TCAATTTCACTGT
chr16	57352653	57352654	chr16:57352654:T:C	rs223881	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr16	57507957	57507958	chr16:57507958:G:A	rs766791642	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr16	57507972	57507973	chr16:57507973:A:G	rs62039369	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr16	57537692	57537693	chr16:57537693:G:C	rs8061658	G	C	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr16	57627637	57627638	chr16:57627638:G:A	rs78292420	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr16	57892264	57892265	chr16:57892265:G:A	rs8044277	G	A	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr16	57892266	57892267	chr16:57892267:A:G	rs8046202	A	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr16	57994349	57994350	chr16:57994350:T:C	rs4145589	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr16	58338472	58338473	chr16:58338473:C:T	rs72788151	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr16	58412375	58412376	chr16:58412376:T:C	rs143346168	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	58630285	58630286	chr16:58630286:C:T	rs567692298	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr16	58904526	58904527	chr16:58904527:C:T	rs74620361	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr16	59148453	59148454	chr16:59148454:C:A	rs190494568	C	A	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	59182485	59182486	chr16:59182486:T:C	rs67585228	T	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	59336462	59336463	chr16:59336463:A:G	rs56176679	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.927639844183783	2.126612682266776	TCAATAACAATGA
chr16	59570621	59570622	chr16:59570622:T:C	rs13338586	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr16	59878696	59878697	chr16:59878697:T:C	rs77574902	T	C	T	Sox1.mouse_HMG_3	5	1	+	4.989316592889178	1.1769120378719944	ACACATGCATTGA
chr16	59878720	59878721	chr16:59878721:T:C	rs72787758	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	60905872	60905873	chr16:60905873:G:C	rs148560653	G	C	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr16	61382649	61382650	chr16:61382650:G:A	rs74456422	G	A	g	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr16	61927104	61927105	chr16:61927105:A:G	rs12597062	A	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr16	62162718	62162719	chr16:62162719:C:T	rs10852401	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.2849401233547315	0.3266678922411024	ACAATTACATTCT
chr16	62529001	62529002	chr16:62529002:G:T	rs288601	G	T	G	Sox1.mouse_HMG_3	6	1	-	4.298480930039673	4.350034272916211	TCACTACCACTGT
chr16	63356096	63356097	chr16:63356097:T:A	rs77295452	T	A	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr16	63787217	63787218	chr16:63787218:A:G	chr16:63787218:A:G	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr16	64186294	64186295	chr16:64186295:C:T	rs184773717	C	T	C	Sox1.mouse_HMG_3	11	1	-	3.9060811167092564	-0.20375931427664185	CCAATTTCAGTGA
chr16	64363242	64363243	chr16:64363243:A:G	rs146413077	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr16	64397300	64397301	chr16:64397301:A:T	chr16:64397301:A:T	A	T	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr16	64791862	64791863	chr16:64791863:T:C	rs17410049	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr16	64822437	64822438	chr16:64822438:C:T	rs62044497	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr16	64920448	64920449	chr16:64920449:T:C	rs4967877	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr16	64983620	64983621	chr16:64983621:T:C	rs1025312	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr16	65104686	65104687	chr16:65104687:C:A	rs7203623	C	A	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr16	65156315	65156316	chr16:65156316:T:C	rs12932858	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.626239274300426	0.8252121123834206	TCAATTTCATAGA
chr16	65229704	65229705	chr16:65229705:A:T	rs9673255	A	T	A	Sox1.mouse_HMG_3	6	1	+	5.110877287529217	4.546246129542208	ACAATAACAGTAA
chr16	65404682	65404683	chr16:65404683:G:C	rs138892820	G	C	G	Sox1.mouse_HMG_3	7	1	-	8.857897031841864	1.978160641377254	TCAATTCCAGTGT
chr16	65482209	65482210	chr16:65482210:C:T	rs8048931	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr16	65667133	65667134	chr16:65667134:C:A	rs76631459	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr16	65945934	65945935	chr16:65945935:T:C	rs166210	T	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr16	66080002	66080003	chr16:66080003:T:C	rs151136299	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.533222743041442	0.6463132352409338	TCAAAGACATTGT
chr16	66266287	66266288	chr16:66266288:C:G	rs2576483	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr16	66266292	66266293	chr16:66266293:A:C	rs893199	A	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr16	66487971	66487972	chr16:66487972:T:C	rs16956575	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr16	66523514	66523515	chr16:66523515:A:G	rs13334391	A	G	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr16	67327833	67327834	chr16:67327834:G:C	rs9939523	G	C	G	Sox1.mouse_HMG_3	7	1	-	5.1657625383985035	-1.7139738520661054	TCAATAGCATTTG
chr16	67385121	67385122	chr16:67385122:G:T	rs8059226	G	T	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	67564529	67564530	chr16:67564530:G:C	rs35482869	G	C	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr16	68067576	68067577	chr16:68067577:C:T	rs113896227	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	68557252	68557253	chr16:68557253:T:A	rs1728784	T	A	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr16	68646569	68646570	chr16:68646570:C:G	rs148274676	C	G	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr16	68775303	68775304	chr16:68775304:C:T	rs13334326	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.181285168626976	0.22301293751335027	ACAATGCCATTAT
chr16	68849018	68849019	chr16:68849019:C:T	rs59559079	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr16	69410356	69410357	chr16:69410357:A:G	rs78157189	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.408187088126445	0.6071599262094409	TCAATGTCATTAC
chr16	69564753	69564754	chr16:69564754:T:A	rs62052821	T	A	T	Sox1.mouse_HMG_3	4	1	+	4.3382707979772235	-0.2969419978273897	TCAATTTCATGGG
chr16	69720704	69720705	chr16:69720705:G:A	rs2917674	G	A	A	Sox1.mouse_HMG_3	11	1	+	4.426382756791613	0.31654232580571495	CCAATCACATTGA
chr16	69762134	69762135	chr16:69762135:A:G	rs150210700	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr16	69772793	69772794	chr16:69772794:C:T	chr16:69772794:C:T	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr16	69849303	69849304	chr16:69849304:A:C	chr16:69849304:A:C	A	C	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr16	69895233	69895234	chr16:69895234:G:A	rs7200005	G	A	G	Sox1.mouse_HMG_3	10	1	-	3.202854904526984	7.838067700331598	TCAATGGCAGCGC
chr16	69918753	69918754	chr16:69918754:C:T	rs4985456	C	T	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr16	70161374	70161375	chr16:70161375:C:A	rs374268826	C	A	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr16	70404555	70404556	chr16:70404556:T:C	rs79421354	T	C	T	Sox1.mouse_HMG_3	2	1	-	3.4755068386641557	-3.433247940651065	TCACTAACACTGG
chr16	70460806	70460807	chr16:70460807:G:A	rs553447450	G	A	g	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr16	70682763	70682764	chr16:70682764:T:G	rs58623884	T	G	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr16	70731224	70731225	chr16:70731225:G:A	rs60028268	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr16	70803715	70803716	chr16:70803716:G:T	rs77069808	G	T	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr16	71485045	71485046	chr16:71485046:C:A	rs9933647	C	A	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr16	71864022	71864023	chr16:71864023:T:C	rs2335714	T	C	C	Sox1.mouse_HMG_3	2	1	-	5.132940659748029	-1.7758141195671904	TCACTTCTATTAA
chr16	72000964	72000965	chr16:72000965:T:C	rs7185215	T	C	T	Sox1.mouse_HMG_3	6	1	-	6.104490358020287	5.627974418365065	ACAATAACATTTA
chr16	72084135	72084136	chr16:72084136:T:C	rs140223256	T	C	T	Sox1.mouse_HMG_3	9	1	+	3.4672758986960504	-3.4196336091044572	TCACTTCCCTTGC
chr16	72665538	72665539	chr16:72665539:T:G	rs777683990	T	G	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr16	72673354	72673355	chr16:72673355:C:T	rs181294482	C	T	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	72673393	72673394	chr16:72673394:C:T	rs8062201	C	T	c	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr16	72783739	72783740	chr16:72783740:G:A	rs145500933	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr16	72898188	72898189	chr16:72898189:G:A	rs74028143	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	72908524	72908525	chr16:72908525:G:A	rs17618144	G	A	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr16	72925067	72925068	chr16:72925068:C:T	rs12922127	C	T	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr16	72925085	72925086	chr16:72925086:A:G	rs11864105	A	G	G	Sox1.mouse_HMG_3	4	1	-	8.65322763574235	1.7531316141277045	TCACTGGCATTGG
chr16	72978387	72978388	chr16:72978388:T:C	rs12596810	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr16	72985851	72985852	chr16:72985852:C:T	rs780850790	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr16	73298847	73298848	chr16:73298848:G:A	rs184504674	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr16	73298857	73298858	chr16:73298858:G:T	rs7206112	G	T	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr16	73312484	73312485	chr16:73312485:T:C	rs7189366	T	C	T	Sox1.mouse_HMG_3	2	1	-	6.150156637458316	-0.7585981418569032	ACACTATCATTAA
chr16	73485188	73485189	chr16:73485189:T:C	rs8044612	T	C	t	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr16	73568675	73568676	chr16:73568676:C:T	rs137871707	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr16	73796576	73796577	chr16:73796577:T:C	rs417278	T	C	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr16	73797616	73797617	chr16:73797617:C:T	rs565955	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr16	74425907	74425908	chr16:74425908:C:A	rs11639801	C	A	.	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr16	74708559	74708560	chr16:74708560:A:G	rs73614621	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr16	74708571	74708572	chr16:74708572:T:C	rs73614623	T	C	T	Sox1.mouse_HMG_3	8	1	-	3.145636623195582	-3.763118156119639	TCAGTGACATCGA
chr16	74827674	74827675	chr16:74827675:A:G	rs72794763	A	G	A	Sox1.mouse_HMG_3	8	1	+	8.930246954376932	2.0214921750617107	TCAATAACATTTA
chr16	75192543	75192544	chr16:75192544:G:A	rs116986260	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr16	75196331	75196332	chr16:75196332:C:T	rs1559362	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr16	75212520	75212521	chr16:75212521:C:T	rs9927309	C	T	c	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr16	75310134	75310135	chr16:75310135:T:C	rs145212247	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr16	75337845	75337846	chr16:75337846:C:G	rs3863445	C	G	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr16	75792992	75792993	chr16:75792993:C:T	rs150085746	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr16	75801546	75801547	chr16:75801547:G:A	rs74024829	G	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr16	75864415	75864416	chr16:75864416:A:G	rs4349174	A	G	a	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr16	75958131	75958132	chr16:75958132:G:A	rs1025898563	G	A	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	76122446	76122447	chr16:76122447:G:A	rs4887852	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr16	76345477	76345478	chr16:76345478:T:G	rs61368169	T	G	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr16	76345523	76345524	chr16:76345524:C:T	rs78786642	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	76446626	76446627	chr16:76446627:T:C	rs9923889	T	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	76446674	76446675	chr16:76446675:G:A	rs9930895	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.268339517231407	1.6358720261362154	TCAAGGACATTGT
chr16	76458664	76458665	chr16:76458665:T:C	rs78954717	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.841227650246687	-1.0675271290685329	TCACTTGCATTAC
chr16	76462233	76462234	chr16:76462234:C:T	rs34782687	C	T	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	76483492	76483493	chr16:76483493:T:G	rs556221500	T	G	T	Sox1.mouse_HMG_3	3	1	+	9.013522190067285	9.013522190067285	TCATTAACATTGA
chr16	76487630	76487631	chr16:76487631:T:C	rs12926636	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr16	76819153	76819154	chr16:76819154:A:T	rs67384742	A	T	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr16	76823167	76823168	chr16:76823168:C:G	rs144442257	C	G	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr16	76849059	76849060	chr16:76849060:C:G	rs74443760	C	G	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	76880799	76880800	chr16:76880800:G:C	rs78134089	G	C	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr16	77048635	77048636	chr16:77048636:A:C	rs4888590	A	C	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr16	77228045	77228046	chr16:77228046:C:G	rs12449219	C	G	C	Sox1.mouse_HMG_3	1	1	+	4.5068495983157035	-2.3959031890436395	TCAAGTCTATTGA
chr16	77328118	77328119	chr16:77328119:C:G	rs891132	C	G	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr16	77393185	77393186	chr16:77393186:T:G	rs12373077	T	G	G	Sox1.mouse_HMG_3	8	1	-	7.673121801601981	0.7643670222867611	TCCATGACATTGA
chr16	77431138	77431139	chr16:77431139:C:G	rs1366545	C	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr16	77500914	77500915	chr16:77500915:T:A	rs11648237	T	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr16	77607072	77607073	chr16:77607073:T:C	rs9939762	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.03943818351018	-0.8474713242903282	TCACAAGCATTGC
chr16	77676826	77676827	chr16:77676827:C:T	rs8051539	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr16	77680307	77680308	chr16:77680308:G:A	rs11150012	G	A	G	Sox1.mouse_HMG_3	7	1	-	7.578443718864289	3.9459762277690955	ACAAATCCATTGA
chr16	77684030	77684031	chr16:77684031:C:T	rs12596953	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr16	77739512	77739513	chr16:77739513:A:C	rs9652677	A	C	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr16	77780281	77780282	chr16:77780282:T:C	rs12927467	T	C	t	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr16	77854560	77854561	chr16:77854561:G:C	rs897816371	G	C	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr16	77951922	77951923	chr16:77951923:T:C	rs369572747	T	C	T	Sox1.mouse_HMG_3	4	1	+	8.130658331710324	1.2305623100956764	TCAATTCCTTTGA
chr16	77971450	77971451	chr16:77971451:T:G	rs537019003	T	G	T	Sox1.mouse_HMG_3	0	1	+	8.911796564624945	2.0596174225316606	TAAATAACATTGA
chr16	78094416	78094417	chr16:78094417:A:G	rs1073111	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	78118733	78118734	chr16:78118734:G:C	rs10492874	G	C	C	Sox1.mouse_HMG_3	7	1	-	5.475261258918142	-1.4044751315464699	TCACTTTCAATGA
chr16	78286089	78286090	chr16:78286090:A:T	rs56075728	A	T	a	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr16	78290144	78290145	chr16:78290145:C:T	rs9921980	C	T	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr16	78304866	78304867	chr16:78304867:T:C	rs2077576	T	C	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr16	78365285	78365286	chr16:78365286:C:T	rs4888788	C	T	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr16	78365290	78365291	chr16:78365291:G:A	rs13339056	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr16	78389258	78389259	chr16:78389259:C:T	rs75686631	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr16	78463001	78463002	chr16:78463002:C:T	rs115244599	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	78488599	78488600	chr16:78488600:G:C	chr16:78488600:G:C	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr16	78500925	78500926	chr16:78500926:C:A	rs2738736	C	A	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr16	78624684	78624685	chr16:78624685:T:G	rs72805028	T	G	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr16	78683691	78683692	chr16:78683692:A:G	rs7193282	A	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr16	78734547	78734548	chr16:78734548:C:T	rs191340137	C	T	C	Sox1.mouse_HMG_3	4	1	-	3.8581642371878933	6.123047462997928	TCAAGTTCAGTGA
chr16	78912489	78912490	chr16:78912490:A:G	rs16948847	A	G	A	Sox1.mouse_HMG_3	3	1	+	12.11523261042901	5.314205448512006	TCAATTGCATTGC
chr16	78930688	78930689	chr16:78930689:A:G	rs28750193	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr16	79003256	79003257	chr16:79003257:A:T	rs780377265	A	T	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr16	79054065	79054066	chr16:79054066:C:T	rs72795627	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr16	79078040	79078041	chr16:79078041:C:G	rs12716866	C	G	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr16	79105999	79106000	chr16:79106000:T:A	rs553076343	T	A	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr16	79165212	79165213	chr16:79165213:T:C	rs1110544	T	C	T	Sox1.mouse_HMG_3	8	1	-	10.760427841061496	3.851673061746276	TCACTAGCATTGT
chr16	79166580	79166581	chr16:79166581:A:G	rs11150141	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr16	79210827	79210828	chr16:79210828:G:C	rs427883	G	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr16	79261795	79261796	chr16:79261796:C:G	chr16:79261796:C:G	C	G	C	Sox1.mouse_HMG_3	7	1	+	11.700578699558429	4.82084230909382	ACAATTTCATTGA
chr16	79438956	79438957	chr16:79438957:A:C	rs7190849	A	C	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr16	79453174	79453175	chr16:79453175:C:A	rs73581316	C	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr16	79759349	79759350	chr16:79759350:G:A	rs115188758	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr16	79759363	79759364	chr16:79759364:A:C	rs16951312	A	C	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr16	79800346	79800347	chr16:79800347:T:C	rs4889034	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr16	79800363	79800364	chr16:79800364:G:A	rs4889035	G	A	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	79933543	79933544	chr16:79933544:G:C	rs74641295	G	C	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr16	79934338	79934339	chr16:79934339:G:C	rs76028812	G	C	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr16	79959609	79959610	chr16:79959610:G:T	rs4889058	G	T	T	Sox1.mouse_HMG_3	3	1	-	3.60962839766469	5.773792926861114	CCACTTCCATTGT
chr16	79985507	79985508	chr16:79985508:C:G	rs186531386	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr16	80065745	80065746	chr16:80065746:G:A	rs79371685	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr16	80065759	80065760	chr16:80065760:A:C	rs16952225	A	C	A	Sox1.mouse_HMG_3	2	1	+	3.009739368587708	-3.8990154107275123	TCACTGACTTTGC
chr16	80117768	80117769	chr16:80117769:T:C	rs10514481	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr16	80129779	80129780	chr16:80129780:T:C	rs7202741	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr16	80307455	80307456	chr16:80307456:C:T	rs72816456	C	T	C	Sox1.mouse_HMG_3	6	1	+	7.646020840433303	7.132943025322833	TCAATGCCATTTA
chr16	80362428	80362429	chr16:80362429:A:T	rs13339097	A	T	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	80485981	80485982	chr16:80485982:G:A	rs10871386	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr16	80512075	80512076	chr16:80512076:A:G	rs11150289	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	80526761	80526762	chr16:80526762:T:C	rs75740027	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	80526774	80526775	chr16:80526775:G:C	rs7189437	G	C	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr16	80528121	80528122	chr16:80528122:C:T	rs13333303	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	80664968	80664969	chr16:80664969:T:A	rs11644277	T	A	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr16	80712267	80712268	chr16:80712268:T:C	rs62051679	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	80808033	80808034	chr16:80808034:T:C	rs12446476	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr16	80812310	80812311	chr16:80812311:G:A	rs11643914	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr16	80824497	80824498	chr16:80824498:A:G	rs148918736	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	80841445	80841446	chr16:80841446:T:C	rs112418011	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.824944907037393	-1.083809872277828	TCATTTCCATTGT
chr16	80862175	80862176	chr16:80862176:G:T	rs74871482	G	T	G	Sox1.mouse_HMG_3	7	1	-	3.915873447116002	-1.3746277382320282	ACACTAACTTTGA
chr16	81004462	81004463	chr16:81004463:G:C	rs7202452	G	C	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	81004500	81004501	chr16:81004501:A:G	rs2602419	A	G	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr16	81080413	81080414	chr16:81080414:G:A	rs16954580	G	A	G	Sox1.mouse_HMG_3	5	1	+	7.525833067481464	8.758505838548553	TCAATGACAGTGG
chr16	81139031	81139032	chr16:81139032:G:C	rs12599723	G	C	G	Sox1.mouse_HMG_3	11	1	+	6.982923880951928	2.4160951888323647	TTACTGGCATTGA
chr16	81166618	81166619	chr16:81166619:A:G	rs7194973	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr16	81177308	81177309	chr16:81177309:T:G	rs8049408	T	G	T	Sox1.mouse_HMG_3	12	1	-	11.700578699558429	9.20136079574058	ACAATTTCATTGA
chr16	81414332	81414333	chr16:81414333:T:C	rs72835164	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr16	81415808	81415809	chr16:81415809:C:G	rs9889196	C	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr16	81471790	81471791	chr16:81471791:G:T	rs9928937	G	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr16	81540026	81540027	chr16:81540027:C:T	rs2168798	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr16	81672925	81672926	chr16:81672926:G:A	rs13334224	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr16	81701926	81701927	chr16:81701927:C:A	rs58070059	C	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	81715688	81715689	chr16:81715689:A:C	rs60105122	A	C	A	Sox1.mouse_HMG_3	5	1	-	4.842689855387121	4.333599982402241	TCAATTCCTTTGG
chr16	81843864	81843865	chr16:81843865:T:C	rs72832062	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr16	81879716	81879717	chr16:81879717:G:C	rs76883178	G	C	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr16	82126831	82126832	chr16:82126832:A:C	rs7500803	A	C	C	Sox1.mouse_HMG_3	0	1	-	6.34591322711157	-0.5062659149817144	TCAAATACATTAA
chr16	82146732	82146733	chr16:82146733:G:C	rs7192444	G	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr16	82188001	82188002	chr16:82188002:C:G	rs10514534	C	G	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	82188022	82188023	chr16:82188023:A:G	rs2911407	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.955092822643554	-1.9318166851569543	ACAGTGACATTGA
chr16	82197966	82197967	chr16:82197967:C:G	rs142415206	C	G	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	82197973	82197974	chr16:82197974:A:G	rs2911412	A	G	A	Sox1.mouse_HMG_3	9	1	-	12.116882195969517	5.22997268816901	TCAATGCCATTGT
chr16	82339898	82339899	chr16:82339899:C:G	rs28636900	C	G	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr16	82360752	82360753	chr16:82360753:C:T	rs74922812	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr16	82496028	82496029	chr16:82496029:G:T	rs72828378	G	T	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	82498872	82498873	chr16:82498873:G:T	rs55878175	G	T	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr16	82677690	82677691	chr16:82677691:G:C	rs1560735	G	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr16	82694421	82694422	chr16:82694422:A:G	rs117685833	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr16	82867763	82867764	chr16:82867764:T:A	rs9319576	T	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr16	82867771	82867772	chr16:82867772:C:T	rs72790103	C	T	c	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr16	83070693	83070694	chr16:83070694:T:C	rs4783320	T	C	T	Sox1.mouse_HMG_3	9	1	+	15.09096645390208	8.204056946101575	TCAATTACATTGA
chr16	83070701	83070702	chr16:83070702:A:C	rs8063680	A	C	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr16	83137599	83137600	chr16:83137600:C:T	rs146585490	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr16	83217653	83217654	chr16:83217654:C:A	rs4077622	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr16	83224918	83224919	chr16:83224919:G:C	rs11150554	G	C	G	Sox1.mouse_HMG_3	4	1	-	5.725876047339751	5.725876047339751	TCAACTCCATTGT
chr16	83390767	83390768	chr16:83390768:G:T	rs1424176	G	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	83390774	83390775	chr16:83390775:T:A	rs1424177	T	A	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr16	83494416	83494417	chr16:83494417:A:G	rs1387370	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr16	83498730	83498731	chr16:83498731:G:A	rs4378602	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr16	83563573	83563574	chr16:83563574:G:A	rs12598614	G	A	G	Sox1.mouse_HMG_3	5	1	-	4.37846587727025	8.190870432287435	TCAAGCACATTGA
chr16	83833494	83833495	chr16:83833495:A:G	rs76361064	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr16	83833498	83833499	chr16:83833499:A:G	rs75678411	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.72640634697952	-2.0746208149374867	TCAATGGGATTGC
chr16	83842565	83842566	chr16:83842566:T:C	rs366495	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	83887284	83887285	chr16:83887285:T:A	rs16962121	T	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr16	83907580	83907581	chr16:83907581:T:A	rs9930585	T	A	A	Sox1.mouse_HMG_3	4	1	+	4.190858796778258	-0.4443539990263561	TCACTACCTTTGC
chr16	83936277	83936278	chr16:83936278:G:A	rs9889086	G	A	a	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr16	84008284	84008285	chr16:84008285:G:A	rs74032376	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr16	84172778	84172779	chr16:84172779:G:A	rs1035558	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr16	84261226	84261227	chr16:84261227:C:G	rs117811752	C	G	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr16	84302970	84302971	chr16:84302971:A:G	rs12599383	A	G	A	Sox1.mouse_HMG_3	8	1	+	9.342678942489412	2.433924163174192	ACAATGACATTGT
chr16	84411737	84411738	chr16:84411738:G:A	rs35926752	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	84467284	84467285	chr16:84467285:T:C	rs11643494	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr16	84508909	84508910	chr16:84508910:C:T	rs35473398	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr16	84518018	84518019	chr16:84518019:C:T	rs28473656	C	T	C	Sox1.mouse_HMG_3	5	1	-	6.178588748000054	7.411261519067143	TCAATGACAGCGA
chr16	84518020	84518021	chr16:84518021:T:C	rs7203969	T	C	C	Sox1.mouse_HMG_3	3	1	-	6.178588748000054	-0.6224384139169514	TCAATGACAGCGA
chr16	84570236	84570237	chr16:84570237:C:T	rs111728077	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr16	84621984	84621985	chr16:84621985:A:T	rs16974299	A	T	A	Sox1.mouse_HMG_3	0	1	-	5.144195826422308	2.3184392300656653	TCAATGCCAATGC
chr16	84826505	84826506	chr16:84826506:G:C	rs72799546	G	C	G	Sox1.mouse_HMG_3	8	1	-	7.621568458725443	7.621568458725443	TCAATGCCCTTGA
chr16	84826533	84826534	chr16:84826534:G:A	rs11645545	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr16	84884298	84884299	chr16:84884299:A:G	rs57004720	A	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr16	84884371	84884372	chr16:84884372:C:T	rs34436844	C	T	T	Sox1.mouse_HMG_3	4	1	-	5.550189963435788	7.815073189245821	TCACGTGCATTGA
chr16	84968461	84968462	chr16:84968462:A:G	rs6564086	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	84968479	84968480	chr16:84968480:A:G	rs112022239	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.342258740102814	-2.4587684218141916	TCAACGCCATTGG
chr16	85016853	85016854	chr16:85016854:G:A	rs74563620	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr16	85146455	85146456	chr16:85146456:G:A	rs111726962	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr16	85200621	85200622	chr16:85200622:G:A	rs115786682	G	A	G	Sox1.mouse_HMG_3	5	1	+	5.53080254392027	6.7634753149873585	TCACTGACAATGA
chr16	85220552	85220553	chr16:85220553:G:A	rs555303892	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr16	85310421	85310422	chr16:85310422:T:A	chr16:85310422:T:A	T	A	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr16	85353730	85353731	chr16:85353731:G:A	rs35674767	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr16	85414331	85414332	chr16:85414332:A:G	rs6564118	A	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	85579010	85579011	chr16:85579011:A:G	rs9937814	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.9612019094944575	0.16017474757745198	TCAATGTCAGTGG
chr16	85610567	85610568	chr16:85610568:A:G	rs186969294	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	85614267	85614268	chr16:85614268:C:A	rs567147843	C	A	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr16	85709880	85709881	chr16:85709881:G:A	rs113997296	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr16	85846732	85846733	chr16:85846733:G:A	rs7200652	G	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr16	85921027	85921028	chr16:85921028:C:G	rs16940010	C	G	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr16	85985480	85985481	chr16:85985481:T:A	rs13330176	T	A	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	85986657	85986658	chr16:85986658:C:G	chr16:85986658:C:G	C	G	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr16	86028064	86028065	chr16:86028065:A:G	rs28395189	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr16	86048782	86048783	chr16:86048783:A:G	rs35781150	A	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr16	86078266	86078267	chr16:86078267:C:T	rs7203577	C	T	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	86089845	86089846	chr16:86089846:C:G	rs62050092	C	G	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr16	86194358	86194359	chr16:86194359:A:T	rs276975	A	T	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr16	86223323	86223324	chr16:86223324:G:A	chr16:86223324:G:A	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr16	86223323	86223324	chr16:86223324:G:C	rs13338765	G	C	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr16	86243053	86243054	chr16:86243054:C:A	rs1181796701	C	A	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	86338217	86338218	chr16:86338218:T:C	rs2581300	T	C	t	Sox1.mouse_HMG_3	8	1	-	3.857675053702151	-3.051079725613069	TGACTAGCATTGT
chr16	86338227	86338228	chr16:86338228:G:A	rs12926258	G	A	g	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr16	86356432	86356433	chr16:86356433:G:A	rs1490864	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr16	86392586	86392587	chr16:86392587:T:C	rs3108511	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr16	86542654	86542655	chr16:86542655:C:T	rs75040209	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	86586921	86586922	chr16:86586922:A:T	rs7192043	A	T	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr16	86595341	86595342	chr16:86595342:C:G	rs4843406	C	G	g	Sox1.mouse_HMG_3	11	1	-	3.4672758986960512	-1.0995527934235123	TCCCTTCCATTGC
chr16	86692503	86692504	chr16:86692504:A:G	rs9889093	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr16	86740826	86740827	chr16:86740827:G:A	rs1899882	G	A	A	Sox1.mouse_HMG_3	1	1	-	4.950417472785336	-0.007854758328289524	TCATTTCCATTGG
chr16	86746924	86746925	chr16:86746925:C:T	rs192724388	C	T	-	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr16	86809538	86809539	chr16:86809539:T:C	rs192730066	T	C	T	Sox1.mouse_HMG_3	10	1	+	6.691269242119043	2.0560564463144293	TCAAATGCATTGG
chr16	86837008	86837009	chr16:86837009:A:G	rs60237287	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	86942956	86942957	chr16:86942957:T:C	rs4575542	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.681780559302554	0.8807533973855481	TCAATGACATGGA
chr16	86948148	86948149	chr16:86948149:A:G	rs77099230	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.3625832945977905	-0.27262950120682317	TCAATTCCTGTGA
chr16	86955741	86955742	chr16:86955742:G:A	rs11647668	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr16	87202878	87202879	chr16:87202879:G:A	rs114284356	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr16	87265725	87265726	chr16:87265726:T:C	rs2059883	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr16	87316979	87316980	chr16:87316980:G:C	rs146038096	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr16	87715808	87715809	chr16:87715809:G:T	rs6540069	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	87715834	87715835	chr16:87715835:C:T	rs4843259	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr16	87717579	87717580	chr16:87717580:C:A	rs8054180	C	A	A	Sox1.mouse_HMG_3	7	1	+	4.419158931819727	-0.8713422535283031	GCAATTCCAGTGA
chr16	88131145	88131146	chr16:88131146:A:G	rs75435628	A	G	-	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr16	88159769	88159770	chr16:88159770:A:G	rs7500405	A	G	-	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr16	88268314	88268315	chr16:88268315:A:G	rs59842012	A	G	-	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr16	88352201	88352202	chr16:88352202:C:T	rs565731568	C	T	c	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr16	88372313	88372314	chr16:88372314:C:A	rs1017447238	C	A	-	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr16	88568901	88568902	chr16:88568902:A:G	rs11646848	A	G	G	Sox1.mouse_HMG_3	5	1	+	4.334190993357375	3.1015182222902866	TAACTAACATTGT
chr16	88725638	88725639	chr16:88725639:A:G	rs4782430	A	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr16	88730249	88730250	chr16:88730250:A:G	rs9972645	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr16	88770681	88770682	chr16:88770682:C:G	rs116225637	C	G	C	Sox1.mouse_HMG_3	6	1	+	8.598083671731706	8.173121074953022	TCACTGCCAGTGA
chr16	88855991	88855992	chr16:88855992:C:T	rs113424850	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr16	89094328	89094329	chr16:89094329:C:T	rs74036104	C	T	C	Sox1.mouse_HMG_3	6	1	+	3.4917282804039123	2.9786504652934416	TCACTTCCATTTC
chr16	89094338	89094339	chr16:89094339:T:C	rs9940871	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr16	89187538	89187539	chr16:89187539:C:T	rs376519064	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr16	89375841	89375842	chr16:89375842:C:G	rs3102338	C	G	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr16	89386746	89386747	chr16:89386747:T:G	rs3096297	T	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr16	89454052	89454053	chr16:89454053:A:T	rs578066839	A	T	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr16	89475355	89475356	chr16:89475356:G:C	rs74037207	G	C	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr16	89548924	89548925	chr16:89548925:C:T	rs67643661	C	T	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr16	89689494	89689495	chr16:89689495:A:G	rs258322	A	G	G	Sox1.mouse_HMG_3	8	1	+	6.6017309849121055	-0.30702379440311556	TCACAAACATTGT
chr16	89748409	89748410	chr16:89748410:T:G	rs2011877	T	G	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr16	89791421	89791422	chr16:89791422:G:A	rs149551759	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr16	90044380	90044381	chr16:90044381:A:G	rs3743816	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr16	90044389	90044390	chr16:90044390:C:T	rs74583214	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr17	222181	222182	chr17:222182:G:A	rs62059580	G	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr17	315423	315424	chr17:315424:G:A	rs369795557	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr17	315448	315449	chr17:315449:C:G	rs74596012	C	G	C	Sox1.mouse_HMG_3	6	1	+	5.9751525602144735	5.550189963435788	TCACCTCCATTGA
chr17	315455	315456	chr17:315456:C:T	rs62054961	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr17	316628	316629	chr17:316629:C:G	rs112818877	C	G	-	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr17	317439	317440	chr17:317440:G:T	rs116584068	G	T	-	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr17	395417	395418	chr17:395418:G:A	rs77028725	G	A	A	Sox1.mouse_HMG_3	1	1	+	3.857675053702151	3.857675053702151	TGACTAGCATTGT
chr17	395419	395420	chr17:395420:C:T	rs75828842	C	T	T	Sox1.mouse_HMG_3	3	1	+	3.857675053702151	-0.779187579018428	TGACTAGCATTGT
chr17	928426	928427	chr17:928427:C:T	rs2360111	C	T	c	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	1110663	1110664	chr17:1110664:C:G	rs3813437	C	G	C	Sox1.mouse_HMG_3	1	1	+	4.899265492609057	-2.003487294750288	GCAATTCCATTGG
chr17	1193500	1193501	chr17:1193501:A:G	rs8069303	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr17	1612660	1612661	chr17:1612661:A:G	rs145932983	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr17	1622275	1622276	chr17:1622276:C:A	rs79735563	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	1669492	1669493	chr17:1669493:A:G	rs765453072	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	2136438	2136439	chr17:2136439:T:C	rs9909515	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	2150625	2150626	chr17:2150626:C:T	rs11657636	C	T	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr17	2151814	2151815	chr17:2151815:C:T	rs903159	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr17	2382708	2382709	chr17:2382709:G:A	rs143062717	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr17	2661714	2661715	chr17:2661715:T:C	rs8081803	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr17	2736067	2736068	chr17:2736068:G:A	rs16952349	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr17	2891561	2891562	chr17:2891562:A:G	rs9907411	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr17	3804580	3804581	chr17:3804581:G:A	rs1467914042	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr17	4186900	4186901	chr17:4186901:G:A	rs34188453	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr17	4186906	4186907	chr17:4186907:A:G	rs78871641	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr17	4304593	4304594	chr17:4304594:A:C	rs148560560	A	C	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr17	4405781	4405782	chr17:4405782:C:T	rs35074337	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	4722790	4722791	chr17:4722791:C:T	rs67966027	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr17	4904699	4904700	chr17:4904700:C:T	rs2661697	C	T	t	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr17	5238590	5238591	chr17:5238591:G:A	rs11869522	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr17	5243099	5243100	chr17:5243100:G:A	rs12600921	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	5365836	5365837	chr17:5365837:G:A	rs8081520	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	5429793	5429794	chr17:5429794:T:C	rs181729400	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr17	5543867	5543868	chr17:5543868:C:T	rs34031227	C	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr17	5740932	5740933	chr17:5740933:G:C	rs2058363	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr17	5786663	5786664	chr17:5786664:T:G	rs8070252	T	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	5824801	5824802	chr17:5824802:C:T	rs9907625	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr17	5907094	5907095	chr17:5907095:C:T	rs8080397	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr17	6093823	6093824	chr17:6093824:G:A	rs7225181	G	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr17	6160451	6160452	chr17:6160452:G:A	rs139579510	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr17	6232720	6232721	chr17:6232721:A:G	rs8078484	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	6240626	6240627	chr17:6240627:G:A	rs575093873	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr17	6297886	6297887	chr17:6297887:C:T	rs9903398	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr17	6386154	6386155	chr17:6386155:C:T	rs11078625	C	T	A	Sox1.mouse_HMG_3	1	1	+	3.627817501305668	-1.3304547298079583	TCAAAGCCAGTGC
chr17	6413241	6413242	chr17:6413242:A:G	rs56161371	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr17	6572121	6572122	chr17:6572122:T:C	rs10521148	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr17	6580772	6580773	chr17:6580773:A:C	rs4796515	A	C	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr17	6753406	6753407	chr17:6753407:A:G	rs1983179	A	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr17	6753430	6753431	chr17:6753431:G:A	rs76444677	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.343445742719766	0.706583109999185	TCACTATTATTAA
chr17	7026232	7026233	chr17:7026233:T:C	rs4993974	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.281989898893329	1.4809627369763256	TCAATAGCAGTGG
chr17	7139026	7139027	chr17:7139027:A:C	chr17:7139027:A:C	A	C	A	Sox1.mouse_HMG_3	2	1	+	3.014761662933106	-3.893993116382114	GCACTGCCATTGC
chr17	7139747	7139748	chr17:7139748:A:G	rs75131960	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr17	7208891	7208892	chr17:7208892:C:T	rs73976745	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr17	7208930	7208931	chr17:7208931:C:G	rs72837699	C	G	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	7367034	7367035	chr17:7367035:C:T	rs11655314	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	7489330	7489331	chr17:7489331:C:G	rs3863497	C	G	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	7834680	7834681	chr17:7834681:G:C	rs7208787	G	C	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	7834696	7834697	chr17:7834697:C:T	rs73232396	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr17	7834707	7834708	chr17:7834708:C:T	rs73977766	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.1310093126081675	1.4985418215129749	TCAATGCCATGGC
chr17	8184034	8184035	chr17:8184035:G:A	rs9908995	G	A	.	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr17	8322449	8322450	chr17:8322450:A:G	rs1045172	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr17	8412853	8412854	chr17:8412854:C:A	rs9895315	C	A	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	8429279	8429280	chr17:8429280:G:A	rs937479	G	A	G	Sox1.mouse_HMG_3	8	1	+	5.453415987403428	12.362170766718648	TCACTTTCGTTGA
chr17	8714047	8714048	chr17:8714048:C:G	rs4451989	C	G	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr17	8806160	8806161	chr17:8806161:G:A	rs60422945	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr17	9188103	9188104	chr17:9188104:A:G	rs4791343	A	G	g	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr17	9299030	9299031	chr17:9299031:C:T	rs2429370	C	T	c	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	9410158	9410159	chr17:9410159:A:C	rs62067153	A	C	A	Sox1.mouse_HMG_3	10	1	-	3.05473976660588	-3.845356255008767	TCCATGCCATTCA
chr17	9433340	9433341	chr17:9433341:A:G	rs9916292	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr17	9509767	9509768	chr17:9509768:C:T	rs4791848	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr17	9521273	9521274	chr17:9521274:A:G	rs538548974	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr17	9646796	9646797	chr17:9646797:G:A	rs74332578	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	9770957	9770958	chr17:9770958:A:T	rs11654598	A	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr17	9808653	9808654	chr17:9808654:A:G	rs17207780	A	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr17	9912908	9912909	chr17:9912909:A:G	rs1129463	A	G	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	9992436	9992437	chr17:9992437:C:A	rs77728770	C	A	C	Sox1.mouse_HMG_3	7	1	+	4.108988983055276	-1.1815122022927533	ACAAAAGCAGTGA
chr17	10252523	10252524	chr17:10252524:T:C	rs9913246	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr17	10252532	10252533	chr17:10252533:G:C	rs7224345	G	C	C	Sox1.mouse_HMG_3	5	1	+	3.018398126288282	-0.28491655574402386	TCACTGACATGGC
chr17	10429918	10429919	chr17:10429919:C:T	rs7215212	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr17	10630851	10630852	chr17:10630852:G:A	rs12451903	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	10632866	10632867	chr17:10632867:A:G	rs2285478	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.304901735353681	-1.582007772446826	ACTATTCCATTGA
chr17	10649304	10649305	chr17:10649305:C:T	rs1989811	C	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr17	10809064	10809065	chr17:10809065:T:G	rs7214355	T	G	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr17	11031561	11031562	chr17:11031562:T:C	rs79703440	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr17	11218665	11218666	chr17:11218666:C:T	rs9904109	C	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr17	11275050	11275051	chr17:11275051:T:G	rs11655516	T	G	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	11493059	11493060	chr17:11493060:C:T	rs2908977	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr17	11518944	11518945	chr17:11518945:C:T	rs2969205	C	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	12090213	12090214	chr17:12090214:A:G	rs78094876	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr17	12545874	12545875	chr17:12545875:A:G	rs740854	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	12732836	12732837	chr17:12732837:G:C	rs12944722	G	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr17	13018404	13018405	chr17:13018405:G:A	rs76048435	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr17	13133965	13133966	chr17:13133966:C:A	rs34827110	C	A	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	13200868	13200869	chr17:13200869:T:C	rs73980310	T	C	C	Sox1.mouse_HMG_3	9	1	+	7.626239274300426	0.7393297664999186	TCAATTTCATGGA
chr17	13200883	13200884	chr17:13200884:T:C	rs73980311	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	13338026	13338027	chr17:13338027:T:A	rs375035345	T	A	T	Sox1.mouse_HMG_3	9	1	+	3.5469988787822477	-3.33991062901826	TCAATTACTTCGA
chr17	13351245	13351246	chr17:13351246:T:C	rs17573984	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.290475242541087	-2.596434265259422	ACAAATCCATTGG
chr17	13418062	13418063	chr17:13418063:A:G	rs76850433	A	G	A	Sox1.mouse_HMG_3	10	1	-	3.8159111087239457	-0.8193016870806686	TCAAAAGCAATGA
chr17	13529540	13529541	chr17:13529541:T:C	rs55906252	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr17	13598429	13598430	chr17:13598430:C:T	rs561600083	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr17	13775474	13775475	chr17:13775475:G:A	rs9912099	G	A	A	Sox1.mouse_HMG_3	8	1	+	3.7658961999995735	10.674650979314793	TCACTAGCGTTGC
chr17	13877605	13877606	chr17:13877606:T:C	rs2323052	T	C	C	Sox1.mouse_HMG_3	6	1	-	5.62648485404644	5.149968914391216	TCAACAACATTGG
chr17	14015363	14015364	chr17:14015364:C:A	rs10521249	C	A	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	14019728	14019729	chr17:14019729:T:C	rs117729723	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.66950356408115	-2.23925121523407	TCAATCACATTAC
chr17	14068158	14068159	chr17:14068159:C:T	rs9904086	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr17	14068185	14068186	chr17:14068186:A:T	rs59531604	A	T	a	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr17	14204088	14204089	chr17:14204089:C:T	rs186873480	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	14290876	14290877	chr17:14290877:T:G	rs6502343	T	G	T	Sox1.mouse_HMG_3	10	1	+	5.1739038977841325	-1.7261921238305147	TCCATGACATTGC
chr17	14373039	14373040	chr17:14373040:C:A	rs12450665	C	A	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr17	14435385	14435386	chr17:14435386:A:G	rs4239128	A	G	G	Sox1.mouse_HMG_3	4	1	-	9.527755069994408	2.6276590483797606	TCACTGGCATTGT
chr17	14644896	14644897	chr17:14644897:G:A	rs12946501	G	A	G	Sox1.mouse_HMG_3	10	1	+	4.32809695972852	4.32809695972852	TCAATAGCATGAA
chr17	14661705	14661706	chr17:14661706:T:C	rs11657986	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.479249201043732	-1.4295055782714887	TCACTGCCAATGA
chr17	14714558	14714559	chr17:14714559:C:T	rs9916326	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr17	14773553	14773554	chr17:14773554:G:A	rs7209265	G	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr17	14777395	14777396	chr17:14777396:T:C	rs7208528	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr17	14777402	14777403	chr17:14777403:G:A	rs7207649	G	A	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr17	14882219	14882220	chr17:14882220:A:G	rs72823764	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.856023962945912	-2.044072058668736	ACAATGACATGGA
chr17	15451900	15451901	chr17:15451901:A:G	rs2954777	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr17	15914936	15914937	chr17:15914937:C:T	rs113466152	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr17	15914976	15914977	chr17:15914977:T:C	rs859255	T	C	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr17	15963950	15963951	chr17:15963951:C:G	rs146686306	C	G	c	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr17	16052986	16052987	chr17:16052987:T:G	rs77583787	T	G	T	Sox1.mouse_HMG_3	10	1	+	5.957219474516696	-0.9428765470979514	TCAATAAAATTCA
chr17	16383308	16383309	chr17:16383309:G:A	rs56884277	G	A	g	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr17	16445785	16445786	chr17:16445786:A:G	rs35076500	A	G	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	16453419	16453420	chr17:16453420:C:T	rs78351437	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr17	16456836	16456837	chr17:16456837:G:A	rs35269706	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr17	16486972	16486973	chr17:16486973:G:A	rs76959597	G	A	g	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr17	16584309	16584310	chr17:16584310:G:A	rs62072769	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	16653158	16653159	chr17:16653159:A:G	rs7221518	A	G	.	Sox1.mouse_HMG_3	0	1	+	5.565526139566336	1.539103593829695	ATAATACCATTGT
chr17	16828371	16828372	chr17:16828372:T:C	rs2386356	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr17	16869791	16869792	chr17:16869792:T:G	rs35829898	T	G	N	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	16889543	16889544	chr17:16889544:A:G	rs4280293	A	G	G	Sox1.mouse_HMG_3	10	1	-	6.415235426551794	1.7800226307471791	TCAAGAACATTGC
chr17	16996807	16996808	chr17:16996808:C:T	rs11868128	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	17003431	17003432	chr17:17003432:G:T	rs12941341	G	T	g	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr17	17005676	17005677	chr17:17005677:G:A	rs6502552	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr17	17048194	17048195	chr17:17048195:C:G	rs7225990	C	G	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr17	17226609	17226610	chr17:17226610:C:T	rs1708620	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr17	17242757	17242758	chr17:17242758:G:A	rs544685892	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr17	17309464	17309465	chr17:17309465:G:A	rs9889738	G	A	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	17422636	17422637	chr17:17422637:T:G	rs16961675	T	G	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr17	17750095	17750096	chr17:17750096:A:G	chr17:17750096:A:G	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr17	17750096	17750097	chr17:17750097:T:C	rs12945601	T	C	T	Sox1.mouse_HMG_3	0	1	+	7.883457292930871	1.0312781508375877	TCACTTGCATTCA
chr17	17757430	17757431	chr17:17757431:C:T	chr17:17757431:C:T	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr17	19063869	19063870	chr17:19063870:C:G	rs577577062	C	G	.	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	19063895	19063896	chr17:19063896:T:C	rs200684642	T	C	.	Sox1.mouse_HMG_3	6	1	+	4.9443261144185495	5.45740392952902	TCTCTGTCATTGA
chr17	19063902	19063903	chr17:19063903:G:A	rs367870364	G	A	.	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr17	19367133	19367134	chr17:19367134:G:A	rs3886478	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr17	19538217	19538218	chr17:19538218:C:T	rs2018675	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr17	19540055	19540056	chr17:19540056:G:A	rs117648865	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr17	20053634	20053635	chr17:20053635:A:G	rs55853482	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.930060729195999	-0.9700352924186493	TCTATAGCATTGC
chr17	20083547	20083548	chr17:20083548:T:A	rs4925079	T	A	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	20203881	20203882	chr17:20203882:T:C	rs2703804	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr17	20218231	20218232	chr17:20218232:A:G	rs73981849	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr17	20268210	20268211	chr17:20268211:C:T	rs2158472	C	T	.	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr17	20307495	20307496	chr17:20307496:G:A	rs2386429	G	A	.	Sox1.mouse_HMG_3	1	1	-	5.38190103252794	0.423628801414313	TCACTTTCATTCT
chr17	20593409	20593410	chr17:20593410:T:C	rs9904149	T	C	.	Sox1.mouse_HMG_3	9	1	-	5.195749169298846	8.314583639986818	TCAATGACAATGC
chr17	20902183	20902184	chr17:20902184:T:G	rs16962515	T	G	.	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr17	20977995	20977996	chr17:20977996:A:G	rs11654347	A	G	.	Sox1.mouse_HMG_3	4	1	-	7.493963949873148	0.5938679282585015	TCAATGTCATTAT
chr17	21011321	21011322	chr17:21011322:G:A	rs2291035	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr17	21099823	21099824	chr17:21099824:A:G	rs191929784	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	21291272	21291273	chr17:21291273:G:C	rs199535233	G	C	C	Sox1.mouse_HMG_3	1	1	-	4.073228243836446	-2.8295245435228966	TCTATTGTATTGA
chr17	21317190	21317191	chr17:21317191:A:G	rs141540832	A	G	a	Sox1.mouse_HMG_3	6	1	+	6.766082425180505	6.289566485525283	TCACTAACATTTA
chr17	21405470	21405471	chr17:21405471:G:A	rs543512851	G	A	g	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	21405505	21405506	chr17:21405506:A:G	rs1202667238	A	G	a	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr17	21499804	21499805	chr17:21499805:C:A	rs12942026	C	A	C	Sox1.mouse_HMG_3	7	1	+	8.059143376834834	2.7686421914868036	TCAATTCCATTCT
chr17	21856379	21856380	chr17:21856380:G:C	rs1170661830	G	C	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr17	21887895	21887896	chr17:21887896:G:T	chr17:21887896:G:T	G	T	.	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr17	21887896	21887897	chr17:21887897:A:C	chr17:21887897:A:C	A	C	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr17	21969927	21969928	chr17:21969928:A:G	rs1282284520	A	G	.	Sox1.mouse_HMG_3	9	1	-	4.842689855387123	-2.0442196524133855	TCTATTCCATTGG
chr17	21972548	21972549	chr17:21972549:A:G	rs1171159994	A	G	.	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr17	21976475	21976476	chr17:21976476:C:T	rs1247586183	C	T	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr17	21980452	21980453	chr17:21980453:G:T	rs1281953092	G	T	.	Sox1.mouse_HMG_3	6	1	-	4.498190840615132	4.54974418349167	TCCATTCTATTGA
chr17	21980493	21980494	chr17:21980494:A:T	rs1218333589	A	T	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr17	21980712	21980713	chr17:21980713:A:G	rs1473971608	A	G	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr17	21981348	21981349	chr17:21981349:A:C	rs1291801046	A	C	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr17	21981378	21981379	chr17:21981379:C:G	rs1482642266	C	G	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr17	21981441	21981442	chr17:21981442:T:C	rs912005942	T	C	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr17	21981499	21981500	chr17:21981500:A:C	chr17:21981500:A:C	A	C	.	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	21981537	21981538	chr17:21981538:T:G	rs1319643923	T	G	.	Sox1.mouse_HMG_3	2	1	-	7.973366515088131	1.0646117357729126	TCAATTCCATTCC
chr17	21981557	21981558	chr17:21981558:T:G	rs1384746713	T	G	.	Sox1.mouse_HMG_3	2	1	-	7.973366515088131	1.0646117357729126	TCAATTCCATTCC
chr17	21982257	21982258	chr17:21982258:C:G	rs1370414508	C	G	.	Sox1.mouse_HMG_3	11	1	-	4.842689855387123	0.27586116326755894	TCCATTCCATTGG
chr17	21985368	21985369	chr17:21985369:T:C	chr17:21985369:T:C	T	C	.	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr17	21988635	21988636	chr17:21988636:T:C	rs1440119606	T	C	.	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr17	21988731	21988732	chr17:21988732:G:A	chr17:21988732:G:A	G	A	.	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr17	22524095	22524096	chr17:22524096:C:T	rs76639367	C	T	.	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr17	22708493	22708494	chr17:22708494:C:G	rs530865673	C	G	c	Sox1.mouse_HMG_3	7	1	+	4.045348315217321	-2.8343880752472903	TCATTTGCAGTGA
chr17	22714580	22714581	chr17:22714581:C:T	rs12325748	C	T	t	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr17	26800067	26800068	chr17:26800068:G:T	chr17:26800068:G:T	G	T	N	Sox1.mouse_HMG_3	3	1	-	12.87524858182912	15.039413111025542	TCACTTCCATTGA
chr17	26802943	26802944	chr17:26802944:G:T	chr17:26802944:G:T	G	T	N	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr17	26808352	26808353	chr17:26808353:T:C	chr17:26808353:T:C	T	C	N	Sox1.mouse_HMG_3	3	1	-	5.631440427892477	-1.1695867340245305	TCCATTCCATTGC
chr17	26809255	26809256	chr17:26809256:A:C	rs1409014839	A	C	N	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr17	26809257	26809258	chr17:26809258:G:T	rs1370129191	G	T	N	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr17	26818818	26818819	chr17:26818819:T:G	rs1479484367	T	G	N	Sox1.mouse_HMG_3	2	1	-	7.973366515088131	1.0646117357729126	TCAATTCCATTCC
chr17	26837889	26837890	chr17:26837890:T:G	rs879083147	T	G	N	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	26861440	26861441	chr17:26861441:T:G	rs1377947766	T	G	N	Sox1.mouse_HMG_3	12	1	-	10.47258441890598	7.973366515088131	TCAATTCCATTCA
chr17	26866850	26866851	chr17:26866851:T:G	rs1217653207	T	G	N	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	26938825	26938826	chr17:26938826:A:T	rs187558478	A	T	a	Sox1.mouse_HMG_3	0	1	-	7.184615942582777	4.3588593462261365	TCAATTCCATTCG
chr17	27244372	27244373	chr17:27244373:C:T	rs56295812	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	27352267	27352268	chr17:27352268:A:G	rs34870528	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr17	27669185	27669186	chr17:27669186:T:C	rs116123712	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.139317089410897	1.2524075816103892	TCAAGTCCATTGA
chr17	27771754	27771755	chr17:27771755:G:A	rs7217335	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr17	27861292	27861293	chr17:27861293:C:T	rs954822513	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	27965665	27965666	chr17:27965666:C:T	rs75218558	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	27993269	27993270	chr17:27993270:T:C	rs59828704	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.673121801601981	0.8720946396849751	TCAATGACCTTGA
chr17	28497137	28497138	chr17:28497138:A:G	rs11567842	A	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr17	28968371	28968372	chr17:28968372:C:T	rs868572508	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr17	28968410	28968411	chr17:28968411:G:A	rs773848903	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	28968412	28968413	chr17:28968413:C:T	rs116294447	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	28971690	28971691	chr17:28971691:A:G	rs12453166	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr17	29216328	29216329	chr17:29216329:C:G	rs72819418	C	G	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr17	29439133	29439134	chr17:29439134:G:A	rs4289056	G	A	g	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr17	30831428	30831429	chr17:30831429:A:G	chr17:30831429:A:G	A	G	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr17	31071350	31071351	chr17:31071351:G:A	rs4795571	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr17	31089480	31089481	chr17:31089481:T:C	rs2940183	T	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr17	31274398	31274399	chr17:31274399:A:C	rs113359320	A	C	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr17	31593920	31593921	chr17:31593921:A:G	rs17181735	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr17	31596854	31596855	chr17:31596855:G:A	rs1045663661	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	31630143	31630144	chr17:31630144:T:C	rs62062193	T	C	t	Sox1.mouse_HMG_3	8	1	-	13.085753664800855	6.176998885485636	TCACTATCATTGA
chr17	31680205	31680206	chr17:31680206:C:T	rs78276431	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr17	31744715	31744716	chr17:31744716:G:T	rs1019982783	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr17	31744747	31744748	chr17:31744748:T:G	rs58143895	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr17	32112304	32112305	chr17:32112305:G:A	rs3809786	G	A	.	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	32504672	32504673	chr17:32504673:G:A	rs117164166	G	A	g	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	32519833	32519834	chr17:32519834:A:T	rs73981821	A	T	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr17	32534846	32534847	chr17:32534847:G:A	rs1034593	G	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr17	32943700	32943701	chr17:32943701:G:A	rs9896361	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr17	33162731	33162732	chr17:33162732:C:G	rs9303661	C	G	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr17	33272628	33272629	chr17:33272629:G:C	rs12601597	G	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr17	33279549	33279550	chr17:33279550:C:T	rs7211739	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr17	33366932	33366933	chr17:33366933:T:G	rs1007034	T	G	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	33366942	33366943	chr17:33366943:T:G	rs1007035	T	G	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr17	33422167	33422168	chr17:33422168:T:C	rs35578035	T	C	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	33422194	33422195	chr17:33422195:T:A	rs78569086	T	A	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr17	33455010	33455011	chr17:33455011:A:G	rs9303663	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.108988983055278	-2.6920381788617287	ACAATAGCAGCGA
chr17	33460949	33460950	chr17:33460950:C:T	rs7221002	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	33657482	33657483	chr17:33657483:T:C	rs280051	T	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr17	33757509	33757510	chr17:33757510:T:G	rs902568	T	G	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr17	33781401	33781402	chr17:33781402:A:G	rs16968891	A	G	A	Sox1.mouse_HMG_3	8	1	+	3.453661567149443	-3.455093212165778	TCTCTAACATTGG
chr17	33832499	33832500	chr17:33832500:A:C	rs2881782	A	C	C	Sox1.mouse_HMG_3	12	1	-	6.18464262966056	5.310115195408503	TCACTGCCAGTGT
chr17	33921949	33921950	chr17:33921950:T:A	rs17783755	T	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr17	33973555	33973556	chr17:33973556:C:T	rs902559	C	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	34169600	34169601	chr17:34169601:C:A	rs3744510	C	A	C	Sox1.mouse_HMG_3	1	1	+	4.808424183699508	-2.094328603659838	ACAATTGCATTCT
chr17	34173333	34173334	chr17:34173334:C:T	rs4795883	C	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	34247428	34247429	chr17:34247429:G:A	rs4795893	G	A	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr17	34257888	34257889	chr17:34257889:A:C	chr17:34257889:A:C	A	C	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr17	34257929	34257930	chr17:34257930:T:A	rs41343046	T	A	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr17	34301316	34301317	chr17:34301317:A:G	rs8073784	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.008523021436938	-0.8783864863635693	ACAATAACATTCT
chr17	34361784	34361785	chr17:34361785:A:C	rs61758325	A	C	A	Sox1.mouse_HMG_3	8	1	+	8.81696149371976	1.908206714404539	TCACTTACATTAA
chr17	34486782	34486783	chr17:34486783:T:C	rs10853163	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr17	34501284	34501285	chr17:34501285:G:A	rs1437214	G	A	G	Sox1.mouse_HMG_3	1	1	-	9.959506603795509	5.001234372681884	TCAATTTCATTCA
chr17	34577566	34577567	chr17:34577567:C:T	rs887230	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr17	34670980	34670981	chr17:34670981:T:G	rs4795019	T	G	T	Sox1.mouse_HMG_3	8	1	-	3.6211054820537276	-3.2876492972614932	TCACTGCCATCAA
chr17	34670982	34670983	chr17:34670983:G:A	rs6416978	G	A	A	Sox1.mouse_HMG_3	6	1	-	3.6211054820537276	3.108027666943257	TCACTGCCATCAA
chr17	34777458	34777459	chr17:34777459:C:G	rs11080300	C	G	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr17	34819444	34819445	chr17:34819445:C:T	rs11654996	C	T	C	Sox1.mouse_HMG_3	6	1	+	3.6194556451377595	3.1063778300272897	TCAGTGCCATTAA
chr17	35080620	35080621	chr17:35080621:T:C	rs118074685	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.4494589454219575	-0.3515682164950469	TCAACACCATTGT
chr17	35171587	35171588	chr17:35171588:C:A	rs1295264932	C	A	C	Sox1.mouse_HMG_3	1	1	+	5.4658325325444	-1.4369202548149427	ACACATACATTGA
chr17	35432438	35432439	chr17:35432439:C:G	rs7220689	C	G	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr17	35895607	35895608	chr17:35895608:G:A	rs61590868	G	A	G	Sox1.mouse_HMG_3	1	1	-	8.110607124565114	3.1523348934514863	TCAATAAAATTGT
chr17	35973710	35973711	chr17:35973711:C:A	rs61054586	C	A	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr17	36784283	36784284	chr17:36784284:C:T	rs9912522	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr17	36858866	36858867	chr17:36858867:A:G	rs884207	A	G	g	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr17	36972932	36972933	chr17:36972933:A:G	rs9330246	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr17	37109760	37109761	chr17:37109761:T:C	rs2053670	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr17	37618798	37618799	chr17:37618799:T:A	rs8075634	T	A	T	Sox1.mouse_HMG_3	0	1	+	4.243480815695779	1.4177242193391364	TCAAAACCATTTA
chr17	37773251	37773252	chr17:37773252:A:G	rs58550259	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr17	37818684	37818685	chr17:37818685:G:A	rs11651535	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr17	38551068	38551069	chr17:38551069:T:C	rs2471622	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr17	38597578	38597579	chr17:38597579:G:A	rs3892952	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr17	38606212	38606213	chr17:38606213:T:C	rs558439231	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr17	38609649	38609650	chr17:38609650:C:T	rs7210925	C	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr17	38942752	38942753	chr17:38942753:T:C	rs199649284	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr17	39154283	39154284	chr17:39154284:C:T	rs16517	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr17	39154285	39154286	chr17:39154286:C:T	rs3025199	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr17	39526403	39526404	chr17:39526404:A:G	rs4404103	A	G	A	Sox1.mouse_HMG_3	2	1	+	3.9086373856235563	-3.0001173936916645	TCAATGGCCTTGG
chr17	40180740	40180741	chr17:40180741:G:T	rs79281485	G	T	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr17	40303775	40303776	chr17:40303776:T:G	rs146560092	T	G	T	Sox1.mouse_HMG_3	12	1	-	6.660179863888796	4.1609619600709475	TCAATCCCATTCA
chr17	40439600	40439601	chr17:40439601:C:T	rs1868758	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr17	40516141	40516142	chr17:40516142:T:C	rs532825451	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	40552331	40552332	chr17:40552332:G:A	rs533343604	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr17	40607613	40607614	chr17:40607614:T:A	rs803123	T	A	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr17	40845057	40845058	chr17:40845058:T:C	rs17474883	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr17	40883853	40883854	chr17:40883854:C:T	rs2189387	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr17	40939035	40939036	chr17:40939036:A:G	rs7224867	A	G	G	Sox1.mouse_HMG_3	6	1	-	7.154622022730301	7.667699837840772	TTAATTTCATTGT
chr17	40955210	40955211	chr17:40955211:G:A	rs17645431	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr17	41034286	41034287	chr17:41034287:A:T	rs12936959	A	T	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr17	41060494	41060495	chr17:41060495:T:C	rs113154829	T	C	T	Sox1.mouse_HMG_3	2	1	-	3.076585038120593	-3.8321697411946274	TCAATGCCAATCA
chr17	41289153	41289154	chr17:41289154:T:C	rs17493129	T	C	t	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr17	41381931	41381932	chr17:41381932:G:C	rs3744390	G	C	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr17	41392909	41392910	chr17:41392910:A:G	rs9907506	A	G	G	Sox1.mouse_HMG_3	2	1	+	4.390175619624177	-2.5185791596910434	CCAATGCCATTGG
chr17	41444117	41444118	chr17:41444118:C:T	rs4796639	C	T	C	Sox1.mouse_HMG_3	2	1	-	3.937620697819106	10.846375477134325	TCGATTGCAGTGA
chr17	41458317	41458318	chr17:41458318:G:A	rs28604280	G	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr17	41483988	41483989	chr17:41483989:T:C	rs4796730	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.431029050559083	-0.47772572875613806	TCAATAACATTTC
chr17	41489423	41489424	chr17:41489424:G:A	rs117481918	G	A	G	Sox1.mouse_HMG_3	10	1	-	4.22768719168849	8.862899987493105	TCAAGACCATCGA
chr17	41506882	41506883	chr17:41506883:G:A	rs8079823	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr17	41506883	41506884	chr17:41506884:A:T	rs8081495	A	T	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr17	41591787	41591788	chr17:41591788:A:G	rs7208807	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.194931490670019	-1.7138232886452016	ACAATACTATTAA
chr17	41630162	41630163	chr17:41630163:C:T	rs12937570	C	T	T	Sox1.mouse_HMG_3	3	1	+	3.857675053702151	-0.779187579018428	TAACTAGCATTGT
chr17	41639397	41639398	chr17:41639398:A:G	rs4494601	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.93871948689657	-0.9481900209039373	TCAAGAGCATTGC
chr17	41673476	41673477	chr17:41673477:G:A	rs78724635	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr17	41681803	41681804	chr17:41681804:T:G	rs73300016	T	G	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr17	41687392	41687393	chr17:41687393:C:T	rs117294555	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr17	42003448	42003449	chr17:42003449:G:A	rs8079958	G	A	G	Sox1.mouse_HMG_3	9	1	+	6.032140435485223	2.913305964797248	ACAATTCCAGTGT
chr17	42238755	42238756	chr17:42238756:C:T	rs60380615	C	T	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr17	42248913	42248914	chr17:42248914:T:C	rs114408613	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr17	42248960	42248961	chr17:42248961:G:A	rs763777481	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr17	42269060	42269061	chr17:42269061:C:A	rs77709024	C	A	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr17	42428650	42428651	chr17:42428651:T:A	rs35272895	T	A	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	42536842	42536843	chr17:42536843:G:C	rs185125044	G	C	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr17	42585098	42585099	chr17:42585099:G:A	rs4792992	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr17	42997869	42997870	chr17:42997870:A:C	rs17551185	A	C	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr17	43352153	43352154	chr17:43352154:G:A	rs144953214	G	A	G	Sox1.mouse_HMG_3	12	1	-	4.617931497497697	4.7037083592443985	TCAATGTCATGGC
chr17	43732478	43732479	chr17:43732479:C:T	rs1534402	C	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr17	43815752	43815753	chr17:43815753:T:C	rs1368424620	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr17	43915582	43915583	chr17:43915583:C:T	rs1662745	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr17	44032457	44032458	chr17:44032458:T:C	rs2523165	T	C	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	44409604	44409605	chr17:44409605:C:T	rs12603993	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	44540954	44540955	chr17:44540955:T:G	rs9905890	T	G	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr17	44608230	44608231	chr17:44608231:A:C	rs4078085	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr17	44848667	44848668	chr17:44848668:C:A	rs7225919	C	A	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr17	44872073	44872074	chr17:44872074:C:T	rs71373521	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr17	44872082	44872083	chr17:44872083:G:A	rs17628255	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr17	45287963	45287964	chr17:45287964:C:T	rs11574816	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	45593169	45593170	chr17:45593170:A:G	rs1706732	A	G	a	Sox1.mouse_HMG_3	3	1	+	5.717217289639178	-1.083809872277828	TCCATTCCATTGT
chr17	45729696	45729697	chr17:45729697:C:T	rs2864087	C	T	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr17	45745959	45745960	chr17:45745960:A:G	rs75643244	A	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	45773278	45773279	chr17:45773279:C:T	rs60814418	C	T	T	Sox1.mouse_HMG_3	11	1	-	4.59539922146141	0.485558790475511	TCACTAGAATTGG
chr17	45837361	45837362	chr17:45837362:G:T	rs62054803	G	T	G	Sox1.mouse_HMG_3	5	1	+	4.648523128248286	5.157613001233166	ACAATGCCAGTGG
chr17	45973483	45973484	chr17:45973484:A:G	rs62063776	A	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr17	46107155	46107156	chr17:46107156:T:A	rs117795466	T	A	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr17	46124424	46124425	chr17:46124425:G:C	rs112073200	G	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	46171447	46171448	chr17:46171448:G:A	rs1881194	G	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr17	46203156	46203157	chr17:46203157:A:G	rs2668660	A	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr17	46268672	46268673	chr17:46268673:A:G	rs2532338	A	G	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	46277613	46277614	chr17:46277614:C:A	rs2942178	C	A	.	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr17	46280150	46280151	chr17:46280151:T:C	rs78485162	T	C	.	Sox1.mouse_HMG_3	0	1	+	5.541531205735215	-1.3106479363580692	TCACTTGCCTTGA
chr17	46894285	46894286	chr17:46894286:C:A	rs16941192	C	A	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr17	46910366	46910367	chr17:46910367:A:C	rs197910	A	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr17	46988638	46988639	chr17:46988639:A:G	rs3851797	A	G	.	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	46998816	46998817	chr17:46998817:C:G	rs77212031	C	G	.	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr17	47276602	47276603	chr17:47276603:C:T	rs115492947	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr17	47831038	47831039	chr17:47831039:C:T	rs7220419	C	T	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr17	47935135	47935136	chr17:47935136:A:G	rs80347400	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr17	47935138	47935139	chr17:47935139:C:T	rs11652827	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr17	48173887	48173888	chr17:48173888:C:T	rs17681361	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	48207164	48207165	chr17:48207165:G:T	rs190591861	G	T	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr17	48260562	48260563	chr17:48260563:T:C	rs8073979	T	C	T	Sox1.mouse_HMG_3	8	1	-	9.800465268554051	2.8917104892388314	TCAATTAAATTGA
chr17	48333439	48333440	chr17:48333440:C:T	rs183071364	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr17	48498272	48498273	chr17:48498273:G:A	rs544752022	G	A	G	Sox1.mouse_HMG_3	5	1	-	3.901949937615027	7.7143544926322125	TCAAGCGCATTGA
chr17	48591588	48591589	chr17:48591589:A:G	rs872760	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr17	48623778	48623779	chr17:48623779:C:A	rs11651212	C	A	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr17	48754460	48754461	chr17:48754461:G:A	rs4496206	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr17	48763418	48763419	chr17:48763419:T:C	rs17707058	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr17	49105487	49105488	chr17:49105488:A:G	rs7211751	A	G	-	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr17	49112452	49112453	chr17:49112453:G:A	rs1004274	G	A	-	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	49145919	49145920	chr17:49145920:T:C	rs4794023	T	C	C	Sox1.mouse_HMG_3	2	1	-	8.103816083683004	1.1950613043677834	ACAATTCCATTAA
chr17	49184292	49184293	chr17:49184293:G:C	rs2898833	G	C	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr17	49602992	49602993	chr17:49602993:C:A	rs74749701	C	A	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr17	49991355	49991356	chr17:49991356:T:A	rs8081044	T	A	A	Sox1.mouse_HMG_3	3	1	-	4.88859789627557	-1.912429265641436	ACAATTGCATGGA
chr17	50421711	50421712	chr17:50421712:A:C	rs77582421	A	C	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr17	50426842	50426843	chr17:50426843:C:T	rs111766565	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr17	50440674	50440675	chr17:50440675:C:T	rs62062127	C	T	C	Sox1.mouse_HMG_3	1	1	+	3.0509720596179393	-1.907300171495687	TCACCTGCATTGC
chr17	50517618	50517619	chr17:50517619:G:A	rs113141749	G	A	G	Sox1.mouse_HMG_3	3	1	-	7.730945913039626	3.094083280319044	TCACTGCCATCGA
chr17	50640893	50640894	chr17:50640894:C:A	chr17:50640894:C:A	C	A	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr17	50640901	50640902	chr17:50640902:C:T	rs183904195	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr17	50885558	50885559	chr17:50885559:T:C	rs12150160	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	51167675	51167676	chr17:51167676:T:G	rs73351708	T	G	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr17	51672666	51672667	chr17:51672667:A:C	rs736146	A	C	A	Sox1.mouse_HMG_3	6	1	-	5.38190103252794	5.470016250859725	TCACTTTCATTCT
chr17	51710806	51710807	chr17:51710807:C:G	rs76510397	C	G	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr17	51710827	51710828	chr17:51710828:C:A	rs368110702	C	A	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr17	52492647	52492648	chr17:52492648:G:A	rs1424329	G	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr17	52789220	52789221	chr17:52789221:T:C	rs16952211	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr17	52882799	52882800	chr17:52882800:T:C	rs56334548	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr17	53236992	53236993	chr17:53236993:C:T	rs2222372	C	T	C	Sox1.mouse_HMG_3	6	1	-	3.8684519328501588	4.344967872505382	TAAATAGCATTCA
chr17	53336372	53336373	chr17:53336373:G:C	rs806888	G	C	c	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	53456216	53456217	chr17:53456217:G:C	rs550933477	G	C	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr17	53561186	53561187	chr17:53561187:G:A	rs4309447	G	A	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr17	55286664	55286665	chr17:55286665:T:C	rs16955840	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	55513976	55513977	chr17:55513977:T:C	rs9915073	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	55566149	55566150	chr17:55566150:A:T	rs7220669	A	T	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr17	55654217	55654218	chr17:55654218:G:A	rs8074638	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr17	55661773	55661774	chr17:55661774:G:A	rs76529157	G	A	G	Sox1.mouse_HMG_3	12	1	-	4.912043615249294	4.9978204769959955	TCAAAAACAGTGC
chr17	55768986	55768987	chr17:55768987:T:C	rs2960067	T	C	t	Sox1.mouse_HMG_3	3	1	-	3.5203867854401176	-3.2806403764768874	TCAATGCCATGAA
chr17	55910090	55910091	chr17:55910091:G:A	rs12950088	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr17	55921410	55921411	chr17:55921411:T:G	rs73320219	T	G	T	Sox1.mouse_HMG_3	5	1	-	3.7635578434144903	-0.772429609684903	TCACTATCCTTGT
chr17	56075312	56075313	chr17:56075313:T:G	rs9899803	T	G	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr17	56075342	56075343	chr17:56075343:T:C	rs78564882	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr17	56075355	56075356	chr17:56075356:A:G	rs9898039	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr17	56120935	56120936	chr17:56120936:T:A	rs17819973	T	A	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr17	56257954	56257955	chr17:56257955:A:T	rs56138213	A	T	A	Sox1.mouse_HMG_3	2	1	+	5.24402255893002	-1.664732220385198	TCACTGTCATTAC
chr17	56595488	56595489	chr17:56595489:G:C	rs116716909	G	C	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr17	56599889	56599890	chr17:56599890:A:G	rs7213501	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr17	56786570	56786571	chr17:56786571:C:A	rs60066901	C	A	C	Sox1.mouse_HMG_3	9	1	-	5.519062620374752	9.287137657487284	ACAATTTCAGTGT
chr17	57104955	57104956	chr17:57104956:C:T	rs3785484	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr17	57195493	57195494	chr17:57195494:A:C	rs73321757	A	C	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr17	57214753	57214754	chr17:57214754:T:G	rs12709393	T	G	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr17	57287221	57287222	chr17:57287222:G:A	rs11654429	G	A	G	Sox1.mouse_HMG_3	1	1	-	3.7894228695139813	-1.168849361599644	ACACTCACATTGC
chr17	57287242	57287243	chr17:57287243:A:C	rs4794717	A	C	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	57326560	57326561	chr17:57326561:A:C	rs868728	A	C	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr17	57380188	57380189	chr17:57380189:T:C	rs2695349	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr17	57417383	57417384	chr17:57417384:C:A	rs9892052	C	A	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr17	57426060	57426061	chr17:57426061:G:A	rs12951291	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr17	57485954	57485955	chr17:57485955:C:T	rs277063	C	T	C	Sox1.mouse_HMG_3	6	1	-	4.417727258608437	4.894243198263659	TCTATTGCATTGG
chr17	57550132	57550133	chr17:57550133:G:A	rs75825980	G	A	G	Sox1.mouse_HMG_3	11	1	+	3.823084226059842	-0.2867562049260557	TCAATAGGATCGA
chr17	57838578	57838579	chr17:57838579:C:T	rs9908668	C	T	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr17	57889198	57889199	chr17:57889199:C:G	rs76343382	C	G	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr17	58079114	58079115	chr17:58079115:C:T	rs115829169	C	T	c	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr17	58576086	58576087	chr17:58576087:G:C	rs9893027	G	C	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr17	58667025	58667026	chr17:58667026:C:T	rs113473833	C	T	c	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr17	58679615	58679616	chr17:58679616:A:G	rs302865	A	G	G	Sox1.mouse_HMG_3	12	1	-	3.128090163664069	3.0423133019173663	TCTCTTGCATTGT
chr17	58679626	58679627	chr17:58679627:G:T	rs181482567	G	T	G	Sox1.mouse_HMG_3	1	1	-	3.128090163664069	-3.7746626236952765	TCTCTTGCATTGT
chr17	58786880	58786881	chr17:58786881:C:A	rs11079356	C	A	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	59163657	59163658	chr17:59163658:G:C	rs7502541	G	C	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr17	59423821	59423822	chr17:59423822:A:T	rs117262092	A	T	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr17	59441433	59441434	chr17:59441434:G:A	rs116933436	G	A	G	Sox1.mouse_HMG_3	6	1	+	7.966320139144294	8.442836078799518	TTAATAGCATTGT
chr17	59572816	59572817	chr17:59572817:A:G	rs143388809	A	G	a	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	59777058	59777059	chr17:59777059:G:A	rs6503941	G	A	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr17	59858882	59858883	chr17:59858883:C:T	rs9901118	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr17	60249686	60249687	chr17:60249687:A:G	rs78812326	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr17	60502310	60502311	chr17:60502311:C:G	rs8081970	C	G	C	Sox1.mouse_HMG_3	6	1	+	5.856523557830236	5.431560961051552	TCACTACTATTAA
chr17	61002667	61002668	chr17:61002668:G:A	rs78039895	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	61076107	61076108	chr17:61076108:C:T	rs116091644	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr17	61313112	61313113	chr17:61313113:C:T	rs7221895	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr17	61417212	61417213	chr17:61417213:C:G	chr17:61417213:C:G	C	G	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	61417212	61417213	chr17:61417213:C:T	rs882367	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	61962633	61962634	chr17:61962634:A:G	rs2278813	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.54974418349167	-2.3371653243088377	TCTATTATATTGA
chr17	62058806	62058807	chr17:62058807:G:A	rs4422036	G	A	G	Sox1.mouse_HMG_3	7	1	-	8.854241229792532	5.221773738697339	TCAATACCGTTGA
chr17	62787400	62787401	chr17:62787401:T:C	rs143504792	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.621568458725443	0.7346589509249359	TCCATGCCATTGA
chr17	63078749	63078750	chr17:63078750:C:A	rs73991881	C	A	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr17	63096539	63096540	chr17:63096540:G:A	rs76191747	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr17	63428419	63428420	chr17:63428420:C:G	rs529188261	C	G	g	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr17	63428420	63428421	chr17:63428421:G:T	rs542872176	G	T	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr17	63498881	63498882	chr17:63498882:G:A	rs56060049	G	A	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr17	63787426	63787427	chr17:63787427:T:C	rs9747164	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr17	63857275	63857276	chr17:63857276:G:C	rs149719324	G	C	G	Sox1.mouse_HMG_3	1	1	-	4.864535126901835	-2.0382176604575104	TCAATTCCACTGG
chr17	64457383	64457384	chr17:64457384:A:G	rs974125112	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.38190103252794	-1.5268537467872805	TCACTTTCATTCT
chr17	64457402	64457403	chr17:64457403:C:T	rs921265348	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr17	64815245	64815246	chr17:64815246:A:C	rs2074181	A	C	C	Sox1.mouse_HMG_3	8	1	+	6.037143391136462	-0.8716113881787577	ACAATACCATAGA
chr17	64927597	64927598	chr17:64927598:G:A	rs145044783	G	A	.	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr17	65023285	65023286	chr17:65023286:C:T	rs117394331	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr17	65023312	65023313	chr17:65023313:C:T	rs79770194	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr17	65250159	65250160	chr17:65250160:T:A	rs17763038	T	A	T	Sox1.mouse_HMG_3	10	1	+	5.724009615344823	-1.176086406269825	ACACTCTCATTGA
chr17	65465056	65465057	chr17:65465057:T:C	rs4563070	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr17	65553369	65553370	chr17:65553370:A:C	rs3923086	A	C	A	Sox1.mouse_HMG_3	12	1	+	3.8684519328501588	1.36923402903231	TAAATAGCATTCA
chr17	65577202	65577203	chr17:65577203:G:A	rs1468329	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr17	65775039	65775040	chr17:65775040:C:T	rs115123735	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr17	65785172	65785173	chr17:65785173:T:G	chr17:65785173:T:G	T	G	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	65821198	65821199	chr17:65821199:T:C	rs76997522	T	C	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr17	66021212	66021213	chr17:66021213:A:G	rs973861	A	G	a	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr17	66076512	66076513	chr17:66076513:G:A	rs34163781	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr17	66192622	66192623	chr17:66192623:T:G	rs182337104	T	G	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr17	66322804	66322805	chr17:66322805:C:T	rs62069959	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr17	66387609	66387610	chr17:66387610:G:A	rs4569323	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr17	66411819	66411820	chr17:66411820:C:G	rs1015240978	C	G	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr17	66411826	66411827	chr17:66411827:T:G	rs4486944	T	G	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr17	66431744	66431745	chr17:66431745:T:C	rs9913908	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr17	66448423	66448424	chr17:66448424:C:T	rs228881	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr17	66493585	66493586	chr17:66493586:G:A	rs2109648	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr17	66493611	66493612	chr17:66493612:G:A	rs78505099	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr17	66493618	66493619	chr17:66493619:T:G	rs2109649	T	G	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr17	66509267	66509268	chr17:66509268:G:T	chr17:66509268:G:T	G	T	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	66521194	66521195	chr17:66521195:T:A	rs11651708	T	A	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	66875749	66875750	chr17:66875750:A:G	rs72843366	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.4483433348636865	-2.460411444451532	TCACTAACATCCA
chr17	66938888	66938889	chr17:66938889:G:C	rs7211879	G	C	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr17	66938931	66938932	chr17:66938932:G:A	rs111363448	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr17	66939378	66939379	chr17:66939379:C:A	rs4791007	C	A	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr17	67039098	67039099	chr17:67039099:T:C	rs4790993	T	C	T	Sox1.mouse_HMG_3	12	1	+	8.865120856813752	8.779343995067048	TCAATCACATTGT
chr17	67039118	67039119	chr17:67039119:C:T	rs2885928	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	67117255	67117256	chr17:67117256:G:A	rs4790986	G	A	G	Sox1.mouse_HMG_3	6	1	+	6.135991924404889	6.612507864060111	TCAAAAGCATTCA
chr17	67485992	67485993	chr17:67485993:G:A	rs2916148	G	A	a	Sox1.mouse_HMG_3	6	1	-	4.673038383081085	4.159960567970614	TTAATACTATTGC
chr17	67549929	67549930	chr17:67549930:C:T	rs35201675	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	67549959	67549960	chr17:67549960:G:A	rs184503617	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr17	67682825	67682826	chr17:67682826:T:C	rs2706669	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr17	67725136	67725137	chr17:67725137:T:C	rs6504523	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr17	67865638	67865639	chr17:67865639:G:A	rs7216621	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr17	67967558	67967559	chr17:67967559:C:T	rs12938781	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr17	67991932	67991933	chr17:67991933:T:C	rs9891146	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr17	68130271	68130272	chr17:68130272:A:G	rs71382164	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.6095240286130785	-1.2773854791874286	AAAATAGCATTGA
chr17	68168249	68168250	chr17:68168250:C:A	rs143798484	C	A	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	68183673	68183674	chr17:68183674:C:G	rs11077784	C	G	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr17	68396396	68396397	chr17:68396397:G:C	rs7208111	G	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr17	68397410	68397411	chr17:68397411:C:G	rs6501428	C	G	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr17	68665227	68665228	chr17:68665228:T:G	rs11658862	T	G	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	68665231	68665232	chr17:68665232:A:G	rs11657717	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr17	68808463	68808464	chr17:68808464:C:G	rs73357092	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr17	68954607	68954608	chr17:68954608:T:C	rs7208717	T	C	t	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	68975737	68975738	chr17:68975738:T:C	rs11077859	T	C	c	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	68975756	68975757	chr17:68975757:C:T	rs11077860	C	T	c	Sox1.mouse_HMG_3	10	1	+	5.2832813520983155	9.918494147902928	TCACTGACATCGC
chr17	69150590	69150591	chr17:69150591:C:T	rs721813	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	69762084	69762085	chr17:69762085:T:A	chr17:69762085:T:A	T	A	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr17	69877003	69877004	chr17:69877004:A:C	rs12103827	A	C	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr17	69917110	69917111	chr17:69917111:G:A	rs146456539	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr17	69944635	69944636	chr17:69944636:A:G	rs79365584	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr17	69944638	69944639	chr17:69944639:A:G	rs78036164	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr17	70044888	70044889	chr17:70044889:G:A	rs11871263	G	A	G	Sox1.mouse_HMG_3	7	1	+	5.956740761461525	7.545975966578105	TCAATATGATTGT
chr17	70073207	70073208	chr17:70073208:T:C	rs8070382	T	C	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr17	70074391	70074392	chr17:70074392:C:T	rs11656778	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr17	70074392	70074393	chr17:70074393:A:G	rs1990197	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	70127277	70127278	chr17:70127278:C:T	rs775760300	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	70330196	70330197	chr17:70330197:T:C	rs312691	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr17	70468776	70468777	chr17:70468777:A:G	rs717119	A	G	a	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr17	70810598	70810599	chr17:70810599:G:A	rs7213302	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr17	70912952	70912953	chr17:70912953:T:A	rs41368245	T	A	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr17	71238169	71238170	chr17:71238170:T:C	rs8067695	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr17	71710102	71710103	chr17:71710103:C:T	rs16976853	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr17	71859556	71859557	chr17:71859557:A:G	rs6501509	A	G	g	Sox1.mouse_HMG_3	9	1	-	2.958186025711171	-3.9287234820893366	TCGCTGCCATTGC
chr17	71921678	71921679	chr17:71921679:C:T	rs12941303	C	T	C	Sox1.mouse_HMG_3	6	1	-	9.979237718442246	10.455753658097468	TCAAATGCATTGA
chr17	71939845	71939846	chr17:71939846:G:A	rs78000080	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr17	71976246	71976247	chr17:71976247:A:G	rs76815116	A	G	A	Sox1.mouse_HMG_3	9	1	-	3.4672758986960512	-3.4196336091044564	TCCCTTCCATTGC
chr17	71976270	71976271	chr17:71976271:T:C	rs79092487	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr17	72053679	72053680	chr17:72053680:G:A	rs564767727	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	72053688	72053689	chr17:72053689:C:T	rs79649062	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	72137035	72137036	chr17:72137036:G:A	rs759499	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr17	72387168	72387169	chr17:72387169:G:A	rs144647651	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr17	72390721	72390722	chr17:72390722:T:G	rs9908785	T	G	G	Sox1.mouse_HMG_3	2	1	-	4.960926377874845	-1.947828401440375	TCACTGGCATTCT
chr17	72580957	72580958	chr17:72580958:T:G	rs9895215	T	G	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr17	72617015	72617016	chr17:72617016:T:C	rs9889692	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr17	72710155	72710156	chr17:72710156:T:C	rs16977337	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	72729981	72729982	chr17:72729982:C:T	rs7221363	C	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr17	72783625	72783626	chr17:72783626:C:T	rs2567524	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr17	72788937	72788938	chr17:72788938:A:G	rs752237906	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr17	72893176	72893177	chr17:72893177:C:T	rs148098720	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr17	72968917	72968918	chr17:72968918:G:A	rs57807740	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr17	72993306	72993307	chr17:72993307:G:C	rs8080174	G	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr17	73103815	73103816	chr17:73103816:T:G	rs2172543	T	G	G	Sox1.mouse_HMG_3	6	1	+	4.8004826779437835	4.88859789627557	ACAATTTCATGGA
chr17	73103834	73103835	chr17:73103835:T:C	rs2172542	T	C	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr17	73420159	73420160	chr17:73420160:G:T	rs118130815	G	T	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr17	73420171	73420172	chr17:73420172:T:C	rs144205581	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr17	73420192	73420193	chr17:73420193:T:C	rs12232515	T	C	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr17	73427251	73427252	chr17:73427252:T:C	rs6501638	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr17	73590698	73590699	chr17:73590699:A:G	rs937890	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr17	73684285	73684286	chr17:73684286:T:C	rs323405	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr17	73973074	73973075	chr17:73973075:C:T	chr17:73973075:C:T	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr17	73998566	73998567	chr17:73998567:G:A	rs961584	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr17	74042454	74042455	chr17:74042455:G:A	rs73998690	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr17	74253089	74253090	chr17:74253090:C:A	rs9899862	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr17	74490128	74490129	chr17:74490129:G:A	rs4789066	G	A	g	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr17	74685801	74685802	chr17:74685802:C:T	rs12451231	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	75093610	75093611	chr17:75093611:G:A	rs4789134	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr17	75238746	75238747	chr17:75238747:A:G	rs3178020	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	75294499	75294500	chr17:75294500:C:A	rs11654678	C	A	c	Sox1.mouse_HMG_3	6	1	-	7.492013753936808	7.403898535605023	TTACTTGCATTGA
chr17	75294523	75294524	chr17:75294524:A:G	rs78515399	A	G	a	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr17	75316102	75316103	chr17:75316103:G:A	rs8072449	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	75340863	75340864	chr17:75340864:T:G	rs55681135	T	G	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr17	75487668	75487669	chr17:75487669:G:A	rs115798673	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr17	75587850	75587851	chr17:75587851:T:C	rs707711	T	C	C	Sox1.mouse_HMG_3	4	1	+	5.717217289639178	-1.1828787319754699	TCTATTCCATTGT
chr17	75666770	75666771	chr17:75666771:T:A	chr17:75666771:T:A	T	A	T	Sox1.mouse_HMG_3	8	1	-	7.725308133998068	0.8165533546828476	TCATTTTCATTGA
chr17	75689438	75689439	chr17:75689439:G:A	rs73995969	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	75776390	75776391	chr17:75776391:G:A	rs79695954	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr17	75776416	75776417	chr17:75776417:T:C	rs762633876	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.225030425943794	-0.41018236986082024	TGAAAACCATTGA
chr17	75780104	75780105	chr17:75780105:T:C	rs73352125	T	C	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr17	75855254	75855255	chr17:75855255:C:T	rs368751873	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr17	75976296	75976297	chr17:75976297:C:G	rs73357532	C	G	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr17	76420435	76420436	chr17:76420436:G:T	rs115768156	G	T	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr17	76432920	76432921	chr17:76432921:G:C	rs9903640	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr17	76618095	76618096	chr17:76618096:C:T	rs11650502	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr17	76671916	76671917	chr17:76671917:C:T	chr17:76671917:C:T	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr17	76773401	76773402	chr17:76773402:G:A	rs11868654	G	A	A	Sox1.mouse_HMG_3	7	1	-	7.411261519067143	3.77879402797195	TCAAAAACAGTGA
chr17	76858302	76858303	chr17:76858303:C:T	rs181181555	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr17	76867879	76867880	chr17:76867880:C:A	rs141134129	C	A	C	Sox1.mouse_HMG_3	7	1	+	3.702233363375648	-1.5882678219723814	TCACTATCATTTC
chr17	76867889	76867890	chr17:76867890:T:C	rs4789361	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr17	76989797	76989798	chr17:76989798:G:C	rs8070778	G	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr17	77099081	77099082	chr17:77099082:G:A	rs2292853	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr17	77340946	77340947	chr17:77340947:A:G	rs7221499	A	G	A	Sox1.mouse_HMG_3	8	1	+	3.895968998678906	-3.012785780636315	TTCATACCATTGA
chr17	77341498	77341499	chr17:77341499:G:A	rs577719258	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr17	77648992	77648993	chr17:77648993:G:A	chr17:77648993:G:A	G	A	G	Sox1.mouse_HMG_3	12	1	-	6.412578660807096	6.4983555225537994	TAAATAACATTGC
chr17	77741564	77741565	chr17:77741565:C:T	rs9907463	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	77858124	77858125	chr17:77858125:G:C	rs59053333	G	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr17	77919363	77919364	chr17:77919364:A:G	rs1985661	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	77963742	77963743	chr17:77963743:A:C	rs4789522	A	C	C	Sox1.mouse_HMG_3	9	1	-	6.086039968268302	2.3179649311557684	AAAATAACATTGA
chr17	78010944	78010945	chr17:78010945:G:A	rs551919317	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr17	78030536	78030537	chr17:78030537:T:C	rs66851133	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	78200531	78200532	chr17:78200532:T:C	rs77336916	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.62757045068132	0.7406609428808115	TAAATGCCATTGA
chr17	78416344	78416345	chr17:78416345:C:G	rs114079136	C	G	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr17	78506724	78506725	chr17:78506725:C:T	rs76449350	C	T	.	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr17	78586165	78586166	chr17:78586166:T:C	rs9894703	T	C	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr17	78650420	78650421	chr17:78650421:G:A	rs7210405	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr17	78738783	78738784	chr17:78738784:T:C	rs74682389	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr17	78817349	78817350	chr17:78817350:C:T	rs1043946085	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	78922889	78922890	chr17:78922890:A:G	rs11654008	A	G	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr17	78971265	78971266	chr17:78971266:A:G	rs117771294	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.362457070186094	-1.5244524376144137	AAAATTACATTGA
chr17	79305736	79305737	chr17:79305737:C:A	rs372962035	C	A	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr17	79316502	79316503	chr17:79316503:G:A	rs12600462	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr17	79358577	79358578	chr17:79358578:A:G	rs35405259	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr17	79375094	79375095	chr17:79375095:T:A	rs907910	T	A	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr17	79384624	79384625	chr17:79384625:G:C	rs8075631	G	C	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr17	79456728	79456729	chr17:79456729:C:T	rs869442	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr17	79559117	79559118	chr17:79559118:A:G	rs955628145	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr17	79629839	79629840	chr17:79629840:T:C	rs1021833590	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr17	79648447	79648448	chr17:79648448:G:C	rs926397720	G	C	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr17	79648486	79648487	chr17:79648487:T:C	rs901321548	T	C	c	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr17	79651864	79651865	chr17:79651865:C:A	rs1224160559	C	A	c	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr17	79740637	79740638	chr17:79740638:A:G	rs9900295	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr17	79747016	79747017	chr17:79747017:G:A	rs9907017	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr17	79904816	79904817	chr17:79904817:T:A	rs732573	T	A	A	Sox1.mouse_HMG_3	8	1	-	4.847365205245339	-2.061389574069882	ACCATGACATTGA
chr17	79922067	79922068	chr17:79922068:G:C	rs2120453	G	C	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr17	79922115	79922116	chr17:79922116:A:G	rs2034126	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr17	79937946	79937947	chr17:79937947:C:T	rs75890599	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr17	80116281	80116282	chr17:80116282:G:A	rs12452616	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr17	80191711	80191712	chr17:80191712:C:T	rs8068452	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr17	80211842	80211843	chr17:80211843:G:A	rs2269374	G	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr17	80313180	80313181	chr17:80313181:C:T	rs200773996	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr17	80313185	80313186	chr17:80313186:G:C	rs78857404	G	C	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr17	80364640	80364641	chr17:80364641:G:A	chr17:80364641:G:A	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr17	80544607	80544608	chr17:80544608:G:A	rs4890040	G	A	a	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr17	80575801	80575802	chr17:80575802:G:A	rs4890048	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr17	80620143	80620144	chr17:80620144:T:C	rs9903842	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr17	80635132	80635133	chr17:80635133:C:G	rs62068351	C	G	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	80639908	80639909	chr17:80639909:G:T	rs149863756	G	T	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr17	80648134	80648135	chr17:80648135:T:C	rs190972123	T	C	T	Sox1.mouse_HMG_3	11	1	-	4.180098860999178	8.289939291985077	TCATTTACATTAA
chr17	80818065	80818066	chr17:80818066:C:T	rs9907099	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr17	80860154	80860155	chr17:80860155:G:A	rs56296322	G	A	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr17	80873794	80873795	chr17:80873795:A:G	rs34410650	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr17	80891690	80891691	chr17:80891691:C:G	rs2289763	C	G	G	Sox1.mouse_HMG_3	9	1	-	4.653889026395552	1.535054555707577	ACAATAACAGTCA
chr17	80899658	80899659	chr17:80899659:C:T	rs9895537	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr17	80899663	80899664	chr17:80899664:A:G	rs4969297	A	G	G	Sox1.mouse_HMG_3	0	1	+	3.3588860333039174	-0.6675365124327246	ACACTGCCAGTGT
chr17	80899672	80899673	chr17:80899673:G:T	rs4969298	G	T	G	Sox1.mouse_HMG_3	9	1	+	3.3588860333039174	7.126961070416451	ACACTGCCAGTGT
chr17	80947316	80947317	chr17:80947317:C:T	rs4969231	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr17	81053495	81053496	chr17:81053496:A:G	rs8080252	A	G	A	Sox1.mouse_HMG_3	4	1	-	3.8205221672917706	-3.0795738543228772	TCAATGTCCTTGG
chr17	81181315	81181316	chr17:81181316:A:G	rs906180	A	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr17	81327033	81327034	chr17:81327034:G:A	rs115164403	G	A	g	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr17	81408209	81408210	chr17:81408210:G:A	rs62072956	G	A	g	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr17	81497108	81497109	chr17:81497109:C:A	rs12939651	C	A	c	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr17	81511518	81511519	chr17:81511519:G:A	rs11549222	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr17	81863390	81863391	chr17:81863391:G:T	rs113437492	G	T	G	Sox1.mouse_HMG_3	6	1	-	4.243480815695779	4.2950341585723155	TCAAAACCATTTA
chr17	81924919	81924920	chr17:81924920:A:C	rs186426854	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr17	82134294	82134295	chr17:82134295:A:G	rs4789752	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr17	82188212	82188213	chr17:82188213:G:A	rs4789729	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr17	82238481	82238482	chr17:82238482:T:G	rs117195347	T	G	T	Sox1.mouse_HMG_3	10	1	+	4.570135942061558	-2.3299600795530893	ACAAAGCCATTGC
chr17	82332293	82332294	chr17:82332294:G:A	rs530766499	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr17	82506720	82506721	chr17:82506721:G:A	rs1224117960	G	A	g	Sox1.mouse_HMG_3	7	1	-	6.619436515621091	2.9869690245259	TCAATGTCATTAG
chr17	82506737	82506738	chr17:82506738:T:C	rs9901463	T	C	N	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr17	82559512	82559513	chr17:82559513:C:T	rs191998042	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr17	82559543	82559544	chr17:82559544:G:T	rs78610922	G	T	G	Sox1.mouse_HMG_3	11	1	+	4.768931213299528	-2.1153711843078313	TCATTAGCAGTGA
chr17	82587053	82587054	chr17:82587054:T:C	rs9914529	T	C	T	Sox1.mouse_HMG_3	1	1	+	5.799988027688915	10.758260258802538	TTAATTTCAGTGA
chr17	82848726	82848727	chr17:82848727:C:G	rs56249965	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr17	82871275	82871276	chr17:82871276:G:T	rs76046987	G	T	g	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr17	83008779	83008780	chr17:83008780:G:T	rs11658065	G	T	g	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr17	83011493	83011494	chr17:83011494:G:A	rs7405903	G	A	g	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr17	83091817	83091818	chr17:83091818:T:C	rs548513306	T	C	t	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr17	83105941	83105942	chr17:83105942:C:T	rs28459602	C	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr18	141995	141996	chr18:141996:T:A	rs12604980	T	A	.	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr18	352073	352074	chr18:352074:C:T	rs654312	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr18	406050	406051	chr18:406051:G:A	rs80246746	G	A	G	Sox1.mouse_HMG_3	12	1	-	6.050548307883615	6.136325169630318	TCACTCTCATTGC
chr18	573471	573472	chr18:573472:T:G	rs671408	T	G	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr18	706588	706589	chr18:706589:A:G	rs2612102	A	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr18	841269	841270	chr18:841270:T:G	rs9964297	T	G	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr18	854048	854049	chr18:854049:T:C	rs55983927	T	C	t	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	964423	964424	chr18:964424:T:C	rs12606581	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.226090230180219	-1.6740057914344282	TCAGTTTCATTGC
chr18	1823281	1823282	chr18:1823282:A:G	rs72865571	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr18	2166685	2166686	chr18:2166686:T:C	rs476919	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.3010880402328215	-2.6076667390823984	TCACTACCATTTT
chr18	2212609	2212610	chr18:2212610:T:C	rs8082981	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr18	2418512	2418513	chr18:2418513:T:C	rs143810338	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr18	2419228	2419229	chr18:2419229:G:T	rs12607550	G	T	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr18	2425927	2425928	chr18:2425928:T:C	rs9957835	T	C	C	Sox1.mouse_HMG_3	10	1	+	2.980031297225883	-1.6551814985787312	TCACTGCCACTGC
chr18	2444655	2444656	chr18:2444656:G:A	rs9946882	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr18	2513936	2513937	chr18:2513937:G:A	rs11665217	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr18	2872369	2872370	chr18:2872370:T:C	rs9950998	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr18	2889993	2889994	chr18:2889994:T:A	rs116052095	T	A	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr18	3011743	3011744	chr18:3011744:G:C	rs58940048	G	C	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr18	3011744	3011745	chr18:3011745:G:C	rs59096963	G	C	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr18	3224397	3224398	chr18:3224398:A:T	rs141119879	A	T	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr18	3226234	3226235	chr18:3226235:G:A	rs11875958	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr18	3264742	3264743	chr18:3264743:A:G	rs1372999	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr18	3319211	3319212	chr18:3319212:A:G	rs1785265	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	3468802	3468803	chr18:3468803:A:G	rs8083002	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr18	3747513	3747514	chr18:3747514:C:G	rs8095503	C	G	c	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr18	3799460	3799461	chr18:3799461:A:C	rs7245152	A	C	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr18	4172962	4172963	chr18:4172963:C:T	rs11081097	C	T	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr18	4193142	4193143	chr18:4193143:A:T	rs11878026	A	T	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr18	4369604	4369605	chr18:4369605:C:T	rs28496698	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr18	4369633	4369634	chr18:4369634:G:A	chr18:4369634:G:A	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr18	4403920	4403921	chr18:4403921:T:C	rs2320213	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr18	4679038	4679039	chr18:4679039:C:G	rs11664043	C	G	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr18	4781883	4781884	chr18:4781884:T:C	rs9965193	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr18	4797073	4797074	chr18:4797074:A:G	rs6506251	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr18	4947183	4947184	chr18:4947184:A:G	rs8092847	A	G	A	Sox1.mouse_HMG_3	12	1	-	12.201009472175713	12.11523261042901	TCAATTGCATTGT
chr18	5029736	5029737	chr18:5029737:G:A	rs8087779	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr18	5029744	5029745	chr18:5029745:A:G	rs8089379	A	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr18	5237162	5237163	chr18:5237163:C:G	rs9956056	C	G	C	Sox1.mouse_HMG_3	3	1	+	10.427584020887808	5.790721388167228	TCACTTACATTGC
chr18	5389033	5389034	chr18:5389034:A:C	rs142773617	A	C	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr18	5947874	5947875	chr18:5947875:G:A	rs1893192	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr18	5983703	5983704	chr18:5983704:T:C	rs189949247	T	C	T	Sox1.mouse_HMG_3	8	1	-	9.952717666773093	3.0439628874578726	TCACTGCCATTGT
chr18	5983730	5983731	chr18:5983731:A:G	rs572933	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr18	5986736	5986737	chr18:5986737:T:C	rs367690845	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr18	6396240	6396241	chr18:6396241:T:C	rs341231	T	C	.	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr18	6505597	6505598	chr18:6505598:G:A	rs11873891	G	A	A	Sox1.mouse_HMG_3	7	1	-	6.412578660807096	2.7801111697119034	TAAATAACATTGC
chr18	6613658	6613659	chr18:6613659:C:T	rs7241769	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	6668640	6668641	chr18:6668641:T:G	rs1893286	T	G	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr18	6668906	6668907	chr18:6668907:C:T	rs181072965	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr18	6997818	6997819	chr18:6997819:A:C	rs12961939	A	C	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr18	7113139	7113140	chr18:7113140:T:G	rs16951262	T	G	T	Sox1.mouse_HMG_3	10	1	+	12.512276815972424	5.612180794357778	ACAATAGCATTGA
chr18	7158044	7158045	chr18:7158045:A:G	rs334404	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.951906000710711	1.316693204906096	TCAATAGCACTGC
chr18	7373677	7373678	chr18:7373678:A:G	rs6506501	A	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr18	7823286	7823287	chr18:7823287:A:G	rs941719027	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr18	8028803	8028804	chr18:8028804:G:A	rs145334821	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr18	8092069	8092070	chr18:8092070:T:A	rs523280	T	A	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr18	8300338	8300339	chr18:8300339:A:G	rs16953216	A	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr18	8340311	8340312	chr18:8340312:C:T	rs34727991	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr18	8626595	8626596	chr18:8626596:T:G	rs321653	T	G	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr18	8662962	8662963	chr18:8662963:G:A	rs4798668	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr18	8772316	8772317	chr18:8772317:C:T	rs775286	C	T	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr18	8817779	8817780	chr18:8817780:G:A	rs7240959	G	A	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr18	8867836	8867837	chr18:8867837:C:T	rs632355	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr18	8944904	8944905	chr18:8944905:A:G	rs2062014	A	G	A	Sox1.mouse_HMG_3	2	1	+	6.195419508808566	-0.7133352705066529	TCAATGCCAGTCA
chr18	8944933	8944934	chr18:8944934:G:A	rs73941716	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr18	8945606	8945607	chr18:8945607:G:A	rs62085537	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr18	9039370	9039371	chr18:9039371:C:T	rs57008455	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr18	9103446	9103447	chr18:9103447:T:G	rs551926076	T	G	T	Sox1.mouse_HMG_3	3	1	-	5.118362612782004	2.9541980835855797	TCAATTTCCTTGC
chr18	9113950	9113951	chr18:9113951:A:G	rs117077469	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.649402984740789	-0.23750652305971953	TCACTCCCATTGT
chr18	9673273	9673274	chr18:9673274:T:C	rs73942142	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.550189963435788	0.9149771676311738	TCACCTGCATTGA
chr18	9870933	9870934	chr18:9870934:C:G	rs73940076	C	G	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr18	9974844	9974845	chr18:9974845:G:A	rs139335677	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr18	10122128	10122129	chr18:10122129:G:A	rs1941066	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr18	10143879	10143880	chr18:10143880:G:A	rs1005930	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr18	10148108	10148109	chr18:10148109:A:G	rs144836593	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.294768989699401	-1.605327031915245	TCACTCCCAGTGA
chr18	10323604	10323605	chr18:10323605:C:G	rs206622	C	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr18	10323639	10323640	chr18:10323640:A:G	rs206621	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr18	10405708	10405709	chr18:10405709:C:T	rs571540243	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr18	10536543	10536544	chr18:10536544:G:A	rs73392634	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr18	10640994	10640995	chr18:10640995:A:G	rs573761	A	G	N	Sox1.mouse_HMG_3	3	1	+	4.6311180113118375	-2.169909150605169	TCAATGTCACTGC
chr18	10689480	10689481	chr18:10689481:C:T	rs7235212	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr18	10715852	10715853	chr18:10715853:A:G	rs28712767	A	G	G	Sox1.mouse_HMG_3	0	1	+	6.034486625391764	2.0080640796551226	AAAATACCATTGA
chr18	10928987	10928988	chr18:10928988:G:A	rs155325	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.869397287456348	6.34591322711157	TCAAATGCATTAA
chr18	11044737	11044738	chr18:11044738:C:T	rs2660248	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr18	11154165	11154166	chr18:11154166:G:T	rs8091743	G	T	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr18	11176068	11176069	chr18:11176069:T:G	rs1542836	T	G	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr18	11483973	11483974	chr18:11483974:T:G	rs495434	T	G	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr18	11483979	11483980	chr18:11483980:A:C	rs572045	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr18	11524057	11524058	chr18:11524058:A:T	rs57621243	A	T	.	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr18	11553842	11553843	chr18:11553843:T:C	rs1551898	T	C	.	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr18	11588546	11588547	chr18:11588547:C:T	rs11080526	C	T	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr18	11695551	11695552	chr18:11695552:A:G	rs17515325	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	11923736	11923737	chr18:11923737:A:G	chr18:11923737:A:G	A	G	-	Sox1.mouse_HMG_3	10	1	-	8.363008686196775	3.72779589039216	TCAATATCACTGA
chr18	11971934	11971935	chr18:11971935:A:G	rs9950318	A	G	-	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr18	11994598	11994599	chr18:11994599:C:A	rs669838	C	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr18	11994599	11994600	chr18:11994600:G:A	rs74747865	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr18	12098631	12098632	chr18:12098632:A:C	rs8084767	A	C	.	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr18	12548970	12548971	chr18:12548971:T:C	rs17615991	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr18	12549850	12549851	chr18:12549851:T:C	rs723836	T	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr18	12819616	12819617	chr18:12819617:C:T	rs7227207	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr18	12849718	12849719	chr18:12849719:G:A	rs116194148	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.92700451199339	6.403520451648614	TCACTTGCATTAT
chr18	12849738	12849739	chr18:12849739:G:T	rs73404475	G	T	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr18	12931789	12931790	chr18:12931790:G:A	rs12604538	G	A	G	Sox1.mouse_HMG_3	6	1	+	8.744201778859892	9.220717718515115	ACAATAGCAGTGA
chr18	13375410	13375411	chr18:13375411:G:A	rs79563603	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr18	13413463	13413464	chr18:13413464:G:A	rs7240292	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr18	13512859	13512860	chr18:13512860:T:A	rs1785152	T	A	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr18	13590752	13590753	chr18:13590753:A:G	rs4797788	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr18	14055203	14055204	chr18:14055204:T:C	rs59799912	T	C	t	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr18	21514016	21514017	chr18:21514017:A:C	rs9950162	A	C	A	Sox1.mouse_HMG_3	10	1	-	6.0158375909427	-0.8842584306719468	TCTATAGCATTGT
chr18	21943616	21943617	chr18:21943617:A:T	rs9948997	A	T	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr18	22018457	22018458	chr18:22018458:A:G	rs35261883	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.3382707979772235	-0.29694199782739017	TCAAGTTCATTGG
chr18	22074544	22074545	chr18:22074545:C:T	rs1479914	C	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr18	22079042	22079043	chr18:22079043:A:G	rs9966969	A	G	G	Sox1.mouse_HMG_3	5	1	-	5.777429390216287	1.9650248351991038	TCAACTACATTGT
chr18	22946143	22946144	chr18:22946144:C:T	rs116163207	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr18	23194889	23194890	chr18:23194890:G:A	rs117951138	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr18	23591180	23591181	chr18:23591181:G:A	rs4598991	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr18	23835622	23835623	chr18:23835623:T:A	rs4800515	T	A	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr18	23969939	23969940	chr18:23969940:T:C	rs9958904	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr18	23970664	23970665	chr18:23970665:A:G	rs73400386	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr18	24386403	24386404	chr18:24386404:C:T	rs8086289	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr18	24415471	24415472	chr18:24415472:A:C	rs582110	A	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr18	24589459	24589460	chr18:24589460:T:C	rs9304469	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.723219281595053	-1.163690226205454	TGAATTCCATTGT
chr18	24701904	24701905	chr18:24701905:T:C	rs7235400	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr18	25123319	25123320	chr18:25123320:T:C	rs4372769	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr18	25308714	25308715	chr18:25308715:C:G	rs7237416	C	G	G	Sox1.mouse_HMG_3	1	1	+	4.3625832945977905	-2.5401694927615526	TCTATTCCAGTGA
chr18	25650444	25650445	chr18:25650445:A:C	rs922168616	A	C	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr18	25667822	25667823	chr18:25667823:A:G	rs1838750	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr18	25675430	25675431	chr18:25675431:G:A	rs2604474	G	A	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr18	25854162	25854163	chr18:25854163:C:T	rs1786739	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr18	25899905	25899906	chr18:25899906:G:A	rs17224271	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr18	26059528	26059529	chr18:26059529:A:C	rs28542722	A	C	C	Sox1.mouse_HMG_3	6	1	-	4.573088377569528	4.661203595901313	TCCATATCAGTGA
chr18	26337235	26337236	chr18:26337236:C:G	rs76826263	C	G	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr18	26385913	26385914	chr18:26385914:A:G	rs12954316	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr18	26432834	26432835	chr18:26432835:A:G	rs68047832	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr18	26541849	26541850	chr18:26541850:T:C	rs7238458	T	C	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr18	26782484	26782485	chr18:26782485:T:G	rs8083177	T	G	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr18	26787608	26787609	chr18:26787609:C:G	rs11663064	C	G	C	Sox1.mouse_HMG_3	4	1	+	4.37846587727025	4.37846587727025	TCAACCACATTGA
chr18	27494831	27494832	chr18:27494832:A:G	rs9944974	A	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr18	27861359	27861360	chr18:27861360:A:G	rs28649543	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr18	27900896	27900897	chr18:27900897:A:T	rs12960084	A	T	T	Sox1.mouse_HMG_3	12	1	+	8.359883637439836	5.946442595368689	TCACTAAAATTGA
chr18	28123571	28123572	chr18:28123572:G:A	rs181011272	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr18	28284783	28284784	chr18:28284784:A:C	rs12608255	A	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr18	28387879	28387880	chr18:28387880:G:T	rs7237578	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr18	28718915	28718916	chr18:28718916:A:G	rs9952451	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr18	29653920	29653921	chr18:29653921:T:C	rs1492811	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr18	30278012	30278013	chr18:30278013:A:C	rs529406504	A	C	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr18	30608963	30608964	chr18:30608964:G:A	rs1478539	G	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr18	30811848	30811849	chr18:30811849:A:T	rs17711533	A	T	A	Sox1.mouse_HMG_3	8	1	+	6.412578660807096	-0.49617611850812415	TAAATAACATTGC
chr18	31100277	31100278	chr18:31100278:C:T	rs1550236	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr18	31610838	31610839	chr18:31610839:G:A	rs141873227	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr18	31610973	31610974	chr18:31610974:T:G	rs963316273	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr18	31712154	31712155	chr18:31712155:G:A	rs12326689	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr18	32048899	32048900	chr18:32048900:A:G	rs454768	A	G	a	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr18	32091757	32091758	chr18:32091758:G:A	rs3760568	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr18	32214103	32214104	chr18:32214104:G:A	rs335516	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr18	32249943	32249944	chr18:32249944:A:G	rs10502586	A	G	g	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr18	32298273	32298274	chr18:32298274:C:T	rs77000096	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr18	32335297	32335298	chr18:32335298:C:A	rs686196	C	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr18	32350612	32350613	chr18:32350613:T:C	rs16963205	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr18	32372438	32372439	chr18:32372439:T:G	chr18:32372439:T:G	T	G	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr18	32450558	32450559	chr18:32450559:T:C	rs10502600	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.356455078230219	-1.5304544295702889	ACCATTACATTGA
chr18	33135704	33135705	chr18:33135705:A:T	rs271583	A	T	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr18	33232387	33232388	chr18:33232388:C:A	rs145912515	C	A	c	Sox1.mouse_HMG_3	1	1	+	4.470310911996005	-2.4324418753633377	TCATTTCCAGTGA
chr18	34077720	34077721	chr18:34077721:A:G	rs74641960	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr18	34222185	34222186	chr18:34222186:C:T	rs147759424	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr18	34752361	34752362	chr18:34752362:C:G	rs2040299	C	G	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr18	34752368	34752369	chr18:34752369:A:G	rs4799777	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.457403929529018	0.8221911337244048	TCACTGCCTTTGA
chr18	34852152	34852153	chr18:34852153:A:G	rs1786606	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr18	34894114	34894115	chr18:34894115:C:T	rs2422206	C	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr18	34913788	34913789	chr18:34913789:C:T	rs8083966	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr18	35107307	35107308	chr18:35107308:G:A	rs9807664	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr18	35436285	35436286	chr18:35436286:C:T	rs80268672	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr18	36153728	36153729	chr18:36153729:T:G	rs78310032	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr18	36153772	36153773	chr18:36153773:A:G	rs79428945	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr18	36196163	36196164	chr18:36196164:G:A	rs13381368	G	A	G	Sox1.mouse_HMG_3	6	1	-	9.20534873786617	8.6922709227557	ACAATGCCATTGC
chr18	36196167	36196168	chr18:36196168:T:G	rs13381980	T	G	T	Sox1.mouse_HMG_3	2	1	-	9.20534873786617	2.2965939585509525	ACAATGCCATTGC
chr18	36673781	36673782	chr18:36673782:C:T	rs503274	C	T	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	36673802	36673803	chr18:36673803:C:T	rs17680371	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr18	36689948	36689949	chr18:36689949:G:A	rs11081960	G	A	G	Sox1.mouse_HMG_3	1	1	-	8.81696149371976	3.8586892626061333	TCACTTACATTAA
chr18	36694046	36694047	chr18:36694047:C:A	rs10502664	C	A	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr18	37395690	37395691	chr18:37395691:A:G	rs621118	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr18	37487532	37487533	chr18:37487533:T:C	rs192245249	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.066204580681047	-1.7348225812359588	TCAATAACAGTCT
chr18	37574332	37574333	chr18:37574333:G:A	rs747423507	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr18	37655427	37655428	chr18:37655428:T:A	rs146793896	T	A	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr18	37935213	37935214	chr18:37935214:A:C	rs80337214	A	C	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr18	38040926	38040927	chr18:38040927:T:G	rs1026937	T	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr18	38527069	38527070	chr18:38527070:G:A	rs10445459	G	A	G	Sox1.mouse_HMG_3	5	1	-	6.643349103080283	10.455753658097468	TCAAACACATTGA
chr18	38634062	38634063	chr18:38634063:G:A	rs12608354	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr18	39197127	39197128	chr18:39197128:T:G	rs9959683	T	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr18	39329962	39329963	chr18:39329963:C:T	rs9955938	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr18	39676079	39676080	chr18:39676080:G:A	rs2726246	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr18	40431937	40431938	chr18:40431938:C:T	rs12327278	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr18	40697878	40697879	chr18:40697879:T:C	rs13381985	T	C	t	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr18	40855453	40855454	chr18:40855454:C:A	rs16973792	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr18	40939878	40939879	chr18:40939879:C:T	rs16973911	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr18	40939888	40939889	chr18:40939889:G:C	rs761823977	G	C	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr18	41347016	41347017	chr18:41347017:G:A	rs75087672	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr18	41372410	41372411	chr18:41372411:C:T	rs1845925	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr18	41406934	41406935	chr18:41406935:T:C	rs6507415	T	C	T	Sox1.mouse_HMG_3	9	1	+	9.591955455364134	2.705045947563627	ACACTGACATTGA
chr18	42365560	42365561	chr18:42365561:A:T	rs8087788	A	T	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr18	42455181	42455182	chr18:42455182:A:C	rs346188	A	C	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr18	42611015	42611016	chr18:42611016:C:G	rs7505905	C	G	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr18	42756615	42756616	chr18:42756616:G:A	rs559216	G	A	G	Sox1.mouse_HMG_3	12	1	+	7.236079690313057	10.524048166636259	TCAATAAAATTGG
chr18	42781767	42781768	chr18:42781768:C:G	rs597269	C	G	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr18	43081819	43081820	chr18:43081820:A:C	rs28550022	A	C	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr18	43279210	43279211	chr18:43279211:A:T	rs72902415	A	T	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr18	43868573	43868574	chr18:43868574:T:C	rs8096291	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr18	44309243	44309244	chr18:44309244:A:G	rs7242959	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr18	44309247	44309248	chr18:44309248:G:A	rs36096597	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr18	44802182	44802183	chr18:44802183:G:C	rs1465969	G	C	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr18	44881309	44881310	chr18:44881310:T:C	rs547587831	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr18	45152961	45152962	chr18:45152962:T:G	rs4890530	T	G	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr18	45548782	45548783	chr18:45548783:C:G	rs2542975	C	G	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr18	45660865	45660866	chr18:45660866:G:A	rs17670646	G	A	G	Sox1.mouse_HMG_3	7	1	-	6.332970291236482	2.7005028001412894	ACACTTACAGTGA
chr18	45690616	45690617	chr18:45690617:T:C	rs35191019	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.005599084723014	-1.903155694592206	ACACTGGCATTAA
chr18	45746082	45746083	chr18:45746083:G:A	rs1295257711	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr18	45983385	45983386	chr18:45983386:G:A	rs920294	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr18	46461186	46461187	chr18:46461187:A:G	rs2365332	A	G	G	Sox1.mouse_HMG_3	9	1	-	3.8291809249923436	-3.0577285828081644	TCAAGGTCATTGG
chr18	46748685	46748686	chr18:46748686:A:C	rs113885514	A	C	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr18	46909761	46909762	chr18:46909762:A:G	rs4890698	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr18	47470563	47470564	chr18:47470564:A:T	chr18:47470564:A:T	A	T	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr18	48213446	48213447	chr18:48213447:T:G	rs4940333	T	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr18	48338568	48338569	chr18:48338569:C:T	rs111917360	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr18	48472147	48472148	chr18:48472148:T:C	rs9956450	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr18	48576171	48576172	chr18:48576172:A:G	chr18:48576172:A:G	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	48576171	48576172	chr18:48576172:A:T	rs16949510	A	T	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	48580258	48580259	chr18:48580259:A:G	rs10438972	A	G	G	Sox1.mouse_HMG_3	12	1	+	5.054286604265046	1.7663181279418443	TCACTGGCACTGA
chr18	48592628	48592629	chr18:48592629:T:C	rs118115683	T	C	T	Sox1.mouse_HMG_3	10	1	+	3.946279455519679	-0.6889333402849351	TCAAGTGCAGTGA
chr18	48738319	48738320	chr18:48738320:T:G	rs4939798	T	G	T	Sox1.mouse_HMG_3	0	1	+	4.633725121504984	-2.218454020588299	TCAATGTCATTTC
chr18	48960674	48960675	chr18:48960675:T:C	rs139770888	T	C	T	Sox1.mouse_HMG_3	0	1	-	7.687604286277869	3.661181740541227	ACACTTACATTGT
chr18	48960680	48960681	chr18:48960681:G:A	rs78574740	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr18	49124066	49124067	chr18:49124067:G:T	rs2878902	G	T	G	Sox1.mouse_HMG_3	11	1	+	6.643349103080283	-0.24095329452707626	TCAAACACATTGA
chr18	49189913	49189914	chr18:49189914:G:C	rs55658710	G	C	g	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr18	49274558	49274559	chr18:49274559:A:G	rs191100712	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr18	49362498	49362499	chr18:49362499:G:A	rs75254522	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr18	49412976	49412977	chr18:49412977:G:C	rs12606885	G	C	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr18	49849181	49849182	chr18:49849182:A:C	rs485835	A	C	C	Sox1.mouse_HMG_3	2	1	+	8.437937390714419	1.5291826113991995	TCAATAGCATGGA
chr18	49895389	49895390	chr18:49895390:C:A	rs867263677	C	A	C	Sox1.mouse_HMG_3	3	1	+	5.025126763244572	7.189291292440995	ACACTGACATTCA
chr18	49933123	49933124	chr18:49933124:T:C	rs1790784	T	C	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr18	49938472	49938473	chr18:49938473:A:G	rs12457612	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr18	49977208	49977209	chr18:49977209:C:T	rs4939924	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr18	50184015	50184016	chr18:50184016:C:T	rs8085880	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr18	50619677	50619678	chr18:50619678:T:G	rs3867257	T	G	T	Sox1.mouse_HMG_3	3	1	-	7.694967073116695	5.53080254392027	TCAATGACACTGA
chr18	50704525	50704526	chr18:50704526:C:T	rs7227230	C	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr18	50852960	50852961	chr18:50852961:T:C	rs1893939	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr18	51051221	51051222	chr18:51051222:T:C	rs76642607	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr18	51051246	51051247	chr18:51051247:G:C	rs544824712	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr18	51106558	51106559	chr18:51106559:T:C	rs139023400	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr18	51191555	51191556	chr18:51191556:C:T	rs11082861	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr18	51371138	51371139	chr18:51371139:G:A	rs77947762	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr18	51731239	51731240	chr18:51731240:G:A	rs16953869	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr18	51759564	51759565	chr18:51759565:G:A	rs11660810	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr18	51852939	51852940	chr18:51852940:C:G	rs10853607	C	G	C	Sox1.mouse_HMG_3	1	1	+	5.2041394745287075	-1.6986133128306375	TCAATTTCTTTGT
chr18	52701003	52701004	chr18:52701004:G:A	rs17682262	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.848691847342998	0.7388514163570994	TAAATTCCATTGG
chr18	52764200	52764201	chr18:52764201:G:C	rs1835716	G	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr18	53679763	53679764	chr18:53679764:A:C	rs11876075	A	C	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr18	53847667	53847668	chr18:53847668:C:A	rs7237478	C	A	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr18	53947246	53947247	chr18:53947247:T:G	rs72922020	T	G	T	Sox1.mouse_HMG_3	10	1	+	5.463405921484895	-1.4366901001297525	TAACTGCCATTGA
chr18	53957639	53957640	chr18:53957640:G:A	rs68015088	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr18	54118669	54118670	chr18:54118670:T:G	rs922074	T	G	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr18	54161043	54161044	chr18:54161044:A:G	rs1145310	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr18	54233467	54233468	chr18:54233468:G:A	rs114730458	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr18	54997766	54997767	chr18:54997767:C:T	rs8096352	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr18	55033731	55033732	chr18:55033732:G:A	rs11152150	G	A	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr18	55405303	55405304	chr18:55405304:G:A	rs2958165	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr18	55838798	55838799	chr18:55838799:G:A	rs11151372	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr18	56447669	56447670	chr18:56447670:T:A	rs167309	T	A	T	Sox1.mouse_HMG_3	9	1	+	9.114397369688472	2.2274878618879645	TCACTCACATTGA
chr18	57668007	57668008	chr18:57668008:A:G	rs4940499	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr18	57715852	57715853	chr18:57715853:G:A	rs77865564	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr18	57984938	57984939	chr18:57984939:A:C	rs7236724	A	C	t	Sox1.mouse_HMG_3	5	1	+	6.135991924404889	1.600004471305497	TCAAAAGCATTCA
chr18	57984939	57984940	chr18:57984940:G:A	rs7235042	G	A	G	Sox1.mouse_HMG_3	6	1	+	6.135991924404889	6.612507864060111	TCAAAAGCATTCA
chr18	58218272	58218273	chr18:58218273:T:G	rs17064483	T	G	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr18	58293317	58293318	chr18:58293318:C:T	rs9956458	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr18	58293344	58293345	chr18:58293345:G:T	rs9955824	G	T	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr18	58459014	58459015	chr18:58459015:C:G	rs4383234	C	G	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr18	58572797	58572798	chr18:58572798:C:T	rs11152086	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr18	58615725	58615726	chr18:58615726:C:T	rs76392387	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr18	58639012	58639013	chr18:58639013:A:C	rs74827833	A	C	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr18	58716090	58716091	chr18:58716091:T:C	rs9959997	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr18	58930286	58930287	chr18:58930287:T:C	rs11664500	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr18	59216045	59216046	chr18:59216046:G:C	rs11152135	G	C	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr18	59276251	59276252	chr18:59276252:C:T	rs77759734	C	T	C	Sox1.mouse_HMG_3	1	1	+	6.548527805119599	1.5902555740059747	TCAGTACCATTGT
chr18	59316165	59316166	chr18:59316166:C:A	rs36111007	C	A	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr18	59402532	59402533	chr18:59402533:G:T	rs911061995	G	T	G	Sox1.mouse_HMG_3	5	1	+	7.041184208669748	7.550274081654628	ACACTGCCATTGC
chr18	59502721	59502722	chr18:59502722:G:A	rs117207762	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	59549787	59549788	chr18:59549788:A:G	rs763466400	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr18	59609889	59609890	chr18:59609890:T:G	rs7227311	T	G	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr18	59641091	59641092	chr18:59641092:G:A	rs10445541	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr18	59877457	59877458	chr18:59877458:C:T	rs75287245	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr18	59952044	59952045	chr18:59952045:C:A	rs67538665	C	A	C	Sox1.mouse_HMG_3	1	1	+	5.2333867804781935	-1.669366006881153	ACAATTCCATTCT
chr18	60120326	60120327	chr18:60120327:T:C	rs1893512	T	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr18	60560848	60560849	chr18:60560849:A:C	rs12962133	A	C	A	Sox1.mouse_HMG_3	10	1	-	5.0719151611166335	-1.8281808604980145	TCACTAAAATTGG
chr18	60624245	60624246	chr18:60624246:T:C	rs9947661	T	C	C	Sox1.mouse_HMG_3	5	1	-	8.876086501307245	7.643413730240157	TCAATACCACTGA
chr18	60866621	60866622	chr18:60866622:C:T	rs12959958	C	T	T	Sox1.mouse_HMG_3	12	1	+	4.435527675594072	4.521304537340773	TCAAAAGCAGTGC
chr18	61306584	61306585	chr18:61306585:C:T	rs12604803	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr18	62017936	62017937	chr18:62017937:C:T	rs56369218	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr18	62060799	62060800	chr18:62060800:C:T	rs891690	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr18	62209261	62209262	chr18:62209262:A:G	rs1587999	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr18	62287971	62287972	chr18:62287972:G:A	rs77036427	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr18	62287987	62287988	chr18:62287988:G:A	rs79637446	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.517616030106131	1.8851485390109375	TCACTGACATGGA
chr18	62332446	62332447	chr18:62332447:A:G	rs4547437	A	G	G	Sox1.mouse_HMG_3	2	1	+	5.741669671347038	-1.1670851079681808	TCAATTCCATTTT
chr18	62378970	62378971	chr18:62378971:C:T	rs12954567	C	T	C	Sox1.mouse_HMG_3	7	1	+	11.756119984560558	8.123652493465366	ACAATGACATTGA
chr18	62452261	62452262	chr18:62452262:A:G	rs73465653	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr18	62486552	62486553	chr18:62486553:A:G	rs150739575	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr18	62780925	62780926	chr18:62780926:T:A	rs12961401	T	A	T	Sox1.mouse_HMG_3	4	1	+	7.474279724604926	2.8390669288003143	TCAATGCCAGTGG
chr18	62936250	62936251	chr18:62936251:A:G	rs651761	A	G	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr18	63179863	63179864	chr18:63179864:C:G	rs12457371	C	G	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr18	63287343	63287344	chr18:63287344:A:T	rs2551397	A	T	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr18	63505047	63505048	chr18:63505048:T:C	rs11542560	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr18	63697933	63697934	chr18:63697934:C:T	rs17071470	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr18	63763994	63763995	chr18:63763995:T:C	rs1506413	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.742785384723877	-1.165969394591342	ACAATTGTATTGT
chr18	63924655	63924656	chr18:63924656:C:T	rs62097493	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr18	64365277	64365278	chr18:64365278:T:C	rs2059004	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.26425741116951	-2.6444973681457116	TCACTAACAATGC
chr18	64404452	64404453	chr18:64404453:T:C	rs55993352	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr18	64474815	64474816	chr18:64474816:A:T	rs12966295	A	T	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr18	64499337	64499338	chr18:64499338:T:A	rs9967381	T	A	A	Sox1.mouse_HMG_3	5	1	-	5.382704535888058	4.6591216378058515	TCACAAATATTGA
chr18	64732178	64732179	chr18:64732179:T:C	rs1506226	T	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr18	65106198	65106199	chr18:65106199:C:T	rs176148	C	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr18	65280078	65280079	chr18:65280079:A:G	rs682165	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.216786174354869	-1.6919686049603502	TCAAGGCCATTGT
chr18	65280094	65280095	chr18:65280095:A:G	rs577092165	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr18	65631898	65631899	chr18:65631899:A:G	rs116685555	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr18	65749180	65749181	chr18:65749181:A:G	rs3810078	A	G	G	Sox1.mouse_HMG_3	9	1	-	6.504864967206769	-0.3820445405937378	TCAATATCATCAA
chr18	66093856	66093857	chr18:66093857:A:G	rs978418	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr18	66254398	66254399	chr18:66254399:C:T	rs11664666	C	T	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr18	66604142	66604143	chr18:66604143:C:G	rs768007226	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr18	66872551	66872552	chr18:66872552:C:T	rs9958330	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr18	67672078	67672079	chr18:67672079:G:A	rs2318439	G	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr18	67770302	67770303	chr18:67770303:C:T	rs73464526	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr18	67788646	67788647	chr18:67788647:T:A	rs10401084	T	A	A	Sox1.mouse_HMG_3	3	1	-	6.037143391136462	-0.763883770780543	ACAACACCATTGA
chr18	67788669	67788670	chr18:67788670:A:T	rs115211153	A	T	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr18	68035995	68035996	chr18:68035996:T:C	rs8087130	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr18	68036002	68036003	chr18:68036003:T:G	rs1518022	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr18	68149107	68149108	chr18:68149108:C:A	rs1589134	C	A	c	Sox1.mouse_HMG_3	2	1	+	4.879939138574997	11.788693917890216	ACCATTGCATTGA
chr18	68206504	68206505	chr18:68206505:A:G	rs614711	A	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr18	68234605	68234606	chr18:68234606:T:G	rs58981676	T	G	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr18	68377067	68377068	chr18:68377068:T:C	rs17079006	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr18	68397799	68397800	chr18:68397800:G:T	rs78026384	G	T	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	68699213	68699214	chr18:68699214:G:T	rs185116378	G	T	G	Sox1.mouse_HMG_3	7	1	-	6.042499527098299	0.751998341750268	TCACTTACATTTA
chr18	68797555	68797556	chr18:68797556:T:C	chr18:68797556:T:C	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr18	68954810	68954811	chr18:68954811:C:A	rs4450506	C	A	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr18	69250348	69250349	chr18:69250349:C:T	rs138042748	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr18	69484701	69484702	chr18:69484702:C:T	rs7238166	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr18	69485406	69485407	chr18:69485407:G:A	rs17081040	G	A	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr18	69485426	69485427	chr18:69485427:A:G	rs2364204	A	G	G	Sox1.mouse_HMG_3	2	1	+	6.970929941639515	0.06217516232429632	TCAAAGGCATTGC
chr18	69890039	69890040	chr18:69890040:G:T	rs17802023	G	T	G	Sox1.mouse_HMG_3	1	1	-	4.4227953951749015	-2.4799573921844433	TCAACTACAGTGA
chr18	70221199	70221200	chr18:70221200:G:A	rs117048920	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr18	70249740	70249741	chr18:70249741:G:A	rs4891833	G	A	a	Sox1.mouse_HMG_3	11	1	+	8.442836078799518	4.33299564781362	TTAATAACATTGT
chr18	70256730	70256731	chr18:70256731:C:G	rs12454981	C	G	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr18	70659013	70659014	chr18:70659014:T:C	rs1510040	T	C	T	Sox1.mouse_HMG_3	12	1	-	11.278561898884897	7.990593422561695	TCAATCACATTGA
chr18	70672813	70672814	chr18:70672814:C:T	rs556807958	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr18	70908167	70908168	chr18:70908168:A:G	rs4548980	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	70908570	70908571	chr18:70908571:A:C	rs56257541	A	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr18	71045481	71045482	chr18:71045482:A:G	rs12970821	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr18	71375785	71375786	chr18:71375786:A:G	rs12966240	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr18	71524247	71524248	chr18:71524248:A:G	rs959721399	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr18	72100555	72100556	chr18:72100556:C:T	rs545727409	C	T	c	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr18	73235717	73235718	chr18:73235718:G:A	rs150849315	G	A	G	Sox1.mouse_HMG_3	3	1	+	4.852128416204848	11.653155578121854	TCAGTACCATTAA
chr18	73680748	73680749	chr18:73680749:T:A	rs12969840	T	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr18	74249317	74249318	chr18:74249318:A:G	rs180976128	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.178588748000054	-0.622438413916951	TCAAAGACAGTGA
chr18	74292900	74292901	chr18:74292901:T:G	rs3813106	T	G	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr18	74389007	74389008	chr18:74389008:A:G	rs76073111	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr18	74454215	74454216	chr18:74454216:A:G	rs6566807	A	G	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr18	74511174	74511175	chr18:74511175:C:T	rs8088885	C	T	.	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr18	74680002	74680003	chr18:74680003:G:A	rs6566061	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr18	74791165	74791166	chr18:74791166:T:G	rs12968695	T	G	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr18	75049369	75049370	chr18:75049370:C:A	rs74486978	C	A	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr18	75055312	75055313	chr18:75055313:G:T	rs17056226	G	T	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr18	75061478	75061479	chr18:75061479:C:T	rs35544423	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr18	75128636	75128637	chr18:75128637:A:G	rs17264285	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr18	75307650	75307651	chr18:75307651:C:T	rs2581673	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr18	75338787	75338788	chr18:75338788:C:T	rs77895107	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr18	75475550	75475551	chr18:75475551:T:C	rs114311206	T	C	T	Sox1.mouse_HMG_3	6	1	-	6.741630043472645	6.265114103817423	TCACTAACTTTGA
chr18	75539048	75539049	chr18:75539049:G:C	rs62089545	G	C	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr18	75679347	75679348	chr18:75679348:C:T	rs2584469	C	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr18	75784590	75784591	chr18:75784591:C:T	rs17058124	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr18	76319999	76320000	chr18:76320000:T:G	rs690030	T	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr18	76505675	76505676	chr18:76505676:G:A	rs75265599	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr18	76559528	76559529	chr18:76559529:C:T	rs17059541	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr18	76565050	76565051	chr18:76565051:C:T	rs114389974	C	T	C	Sox1.mouse_HMG_3	7	1	+	6.741630043472645	3.1091625523774526	TCACTAACCTTGA
chr18	76582963	76582964	chr18:76582964:A:G	rs8099303	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr18	76668685	76668686	chr18:76668686:A:G	rs4891184	A	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr18	76678977	76678978	chr18:76678978:C:T	rs58323571	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr18	76894898	76894899	chr18:76894899:A:G	rs552139	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr18	77059082	77059083	chr18:77059083:C:T	rs56014377	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr18	77091127	77091128	chr18:77091128:G:A	rs1667914	G	A	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr18	77141970	77141971	chr18:77141971:T:G	rs1667957	T	G	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr18	77168271	77168272	chr18:77168272:T:C	rs1789138	T	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr18	77324137	77324138	chr18:77324138:C:T	rs75220814	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr18	77709105	77709106	chr18:77709106:C:T	rs1393717	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr18	78107527	78107528	chr18:78107528:G:A	rs12961042	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr18	78107545	78107546	chr18:78107546:C:A	rs147212777	C	A	C	Sox1.mouse_HMG_3	5	1	-	5.78527001125015	6.29435988423503	TCAATGCCATCAA
chr18	78242725	78242726	chr18:78242726:A:G	rs117208583	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr18	78423897	78423898	chr18:78423898:C:T	rs9952979	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr18	78474973	78474974	chr18:78474974:C:T	rs149239585	C	T	-	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr18	78521337	78521338	chr18:78521338:C:T	rs11081619	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr18	78546457	78546458	chr18:78546458:G:T	rs1866330	G	T	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr18	78625590	78625591	chr18:78625591:C:T	rs147188178	C	T	c	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr18	78737971	78737972	chr18:78737972:T:C	rs12963574	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.387035676305651	-2.5217191030095685	TCAATTCCAGTTA
chr18	78828857	78828858	chr18:78828858:G:C	rs11662359	G	C	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr18	78874306	78874307	chr18:78874307:A:G	chr18:78874307:A:G	A	G	A	Sox1.mouse_HMG_3	11	1	+	5.004556938702574	9.114397369688472	TCACTCACATTAA
chr18	78945613	78945614	chr18:78945614:A:G	rs11664610	A	G	A	Sox1.mouse_HMG_3	6	1	+	5.531302620696172	5.054786681040948	ATAATAACATTGC
chr18	79170280	79170281	chr18:79170281:A:G	rs530471572	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr18	79388536	79388537	chr18:79388537:G:A	rs62097703	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr18	79601575	79601576	chr18:79601576:C:T	rs72999788	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr18	79784979	79784980	chr18:79784980:T:C	rs113409982	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr18	79921900	79921901	chr18:79921901:A:G	rs11665374	A	G	G	Sox1.mouse_HMG_3	9	1	-	5.508957272405556	-1.3779522353949507	TCACTGACCTTGA
chr18	80150024	80150025	chr18:80150025:T:C	rs7407145	T	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr18	80244355	80244356	chr18:80244356:T:C	rs6506819	T	C	.	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr19	317701	317702	chr19:317702:C:G	rs57568301	C	G	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr19	605227	605228	chr19:605228:C:T	rs80135478	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr19	605232	605233	chr19:605233:C:T	rs116723556	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr19	658367	658368	chr19:658368:A:G	rs2040739	A	G	a	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr19	906702	906703	chr19:906703:G:C	rs59481135	G	C	-	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr19	1216173	1216174	chr19:1216174:C:T	rs76054223	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr19	1414395	1414396	chr19:1414396:T:G	rs372163718	T	G	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr19	1686880	1686881	chr19:1686881:G:A	rs10425877	G	A	g	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr19	1773353	1773354	chr19:1773354:A:G	rs8108510	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr19	1802942	1802943	chr19:1802943:C:T	rs76861062	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr19	2004048	2004049	chr19:2004049:G:C	rs57014166	G	C	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr19	2032091	2032092	chr19:2032092:G:C	rs112394650	G	C	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr19	2032105	2032106	chr19:2032106:G:A	rs72979699	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	2064016	2064017	chr19:2064017:T:G	rs734931	T	G	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr19	2097641	2097642	chr19:2097642:T:C	rs115783655	T	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr19	2256512	2256513	chr19:2256513:C:T	rs114538290	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr19	2327856	2327857	chr19:2327857:G:C	rs4806838	G	C	g	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr19	2380819	2380820	chr19:2380820:G:C	rs4807247	G	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr19	2549916	2549917	chr19:2549917:T:C	rs75484337	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr19	2569947	2569948	chr19:2569948:T:G	rs10416033	T	G	G	Sox1.mouse_HMG_3	8	1	-	9.918494147902928	3.009739368587708	TCACTGACATTGC
chr19	2616971	2616972	chr19:2616972:A:G	rs74862533	A	G	a	Sox1.mouse_HMG_3	6	1	-	4.969585478242443	5.482663293352914	ACACTTTCATTCA
chr19	2703031	2703032	chr19:2703032:A:G	rs113391116	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.437442317530069	-1.4494671902704401	TCACTGACATTCT
chr19	2746892	2746893	chr19:2746893:A:G	rs77522778	A	G	A	Sox1.mouse_HMG_3	6	1	-	6.619436515621091	7.132514330731562	TCAATGTCATTAG
chr19	2905914	2905915	chr19:2905915:G:T	rs11084971	G	T	G	Sox1.mouse_HMG_3	6	1	-	5.604598179865155	5.656151522741693	ACAATTCCATTAC
chr19	3047561	3047562	chr19:3047562:C:T	rs55919790	C	T	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr19	3125332	3125333	chr19:3125333:T:C	rs77849071	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr19	3571657	3571658	chr19:3571658:G:A	rs146155003	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr19	3983185	3983186	chr19:3983186:A:G	rs2230560	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr19	4040408	4040409	chr19:4040409:C:T	rs72976979	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr19	4114311	4114312	chr19:4114312:T:C	rs350895	T	C	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr19	4145010	4145011	chr19:4145011:G:A	rs693975	G	A	a	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr19	4212347	4212348	chr19:4212348:T:G	rs10417017	T	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr19	4371701	4371702	chr19:4371702:T:C	rs532049202	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr19	4693336	4693337	chr19:4693337:G:A	rs117465167	G	A	G	Sox1.mouse_HMG_3	3	1	-	3.4104393761804555	-1.2264232565401263	ACACTGACAGTGT
chr19	4737676	4737677	chr19:4737677:C:T	rs1860936	C	T	t	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr19	4795634	4795635	chr19:4795635:G:C	rs8111933	G	C	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr19	5075860	5075861	chr19:5075861:A:T	rs114518502	A	T	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr19	5106569	5106570	chr19:5106570:C:T	rs34613513	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr19	5417822	5417823	chr19:5417823:A:T	rs424836	A	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr19	5720372	5720373	chr19:5720373:G:A	rs189210845	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr19	5720376	5720377	chr19:5720377:C:A	rs144543071	C	A	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr19	5720392	5720393	chr19:5720393:A:G	rs180683901	A	G	A	Sox1.mouse_HMG_3	12	1	-	4.591558804371006	4.505781942624303	ACACTACCAGTGT
chr19	5938183	5938184	chr19:5938184:A:G	chr19:5938184:A:G	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr19	6077108	6077109	chr19:6077109:A:G	rs146449661	A	G	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr19	6161469	6161470	chr19:6161470:G:A	rs377754895	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	6495052	6495053	chr19:6495053:C:G	rs446199	C	G	-	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr19	6532941	6532942	chr19:6532942:T:G	rs76771492	T	G	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	6563895	6563896	chr19:6563896:G:C	rs10418885	G	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr19	6610969	6610970	chr19:6610970:T:G	rs6510912	T	G	T	Sox1.mouse_HMG_3	11	1	-	5.83682335412669	5.379835092993025	TCAAAGACATTAA
chr19	6633608	6633609	chr19:6633609:T:C	rs669631	T	C	t	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr19	6678741	6678742	chr19:6678742:A:G	rs11569562	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr19	6790706	6790707	chr19:6790707:T:C	rs192194573	T	C	T	Sox1.mouse_HMG_3	9	1	-	2.1912807247205293	5.310115195408503	TCACTGCCAATGG
chr19	7099798	7099799	chr19:7099799:A:G	rs73923711	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.08820208375813	0.2871749218411248	TTAATAACAGTGA
chr19	7186562	7186563	chr19:7186563:G:A	rs112819336	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr19	7398851	7398852	chr19:7398852:G:A	rs144178389	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr19	7436863	7436864	chr19:7436864:A:C	rs11667083	A	C	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr19	7678934	7678935	chr19:7678935:A:G	rs72996468	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.276583768820332	-2.6321710104948886	TAAAAAACATTGA
chr19	7795877	7795878	chr19:7795878:T:C	rs10401786	T	C	c	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr19	7829754	7829755	chr19:7829755:C:G	rs151063055	C	G	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr19	7829761	7829762	chr19:7829762:T:C	rs530922550	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	8117735	8117736	chr19:8117736:A:G	rs17160208	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.057700696574228	-1.8510540827409918	ACACTTGCATTCA
chr19	8164104	8164105	chr19:8164105:G:A	rs62123345	G	A	g	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr19	8305235	8305236	chr19:8305236:T:C	rs2232778	T	C	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr19	8487754	8487755	chr19:8487755:T:C	rs7248918	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.199517554478831	-2.6873919533216766	TCACCACCATTGC
chr19	8513503	8513504	chr19:8513504:A:G	rs2967580	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.094824950380572	0.45961215457595705	TCAAGACCAGTGA
chr19	8513515	8513516	chr19:8513516:C:A	rs112788230	C	A	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr19	8525729	8525730	chr19:8525730:C:T	rs145378255	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr19	8577485	8577486	chr19:8577486:C:A	chr19:8577486:C:A	C	A	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr19	8601987	8601988	chr19:8601988:G:A	rs7257902	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr19	8677304	8677305	chr19:8677305:C:A	rs4804078	C	A	C	Sox1.mouse_HMG_3	8	1	-	4.4981908406151305	4.4981908406151305	TCAATTCTGTTGA
chr19	8811613	8811614	chr19:8811614:A:G	rs781927784	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr19	9026508	9026509	chr19:9026509:G:T	rs12462970	G	T	t	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr19	9131160	9131161	chr19:9131161:C:A	rs10401464	C	A	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr19	9321230	9321231	chr19:9321231:T:C	rs2082426	T	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr19	9819937	9819938	chr19:9819938:T:C	chr19:9819938:T:C	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr19	9987254	9987255	chr19:9987255:A:C	rs8101390	A	C	A	Sox1.mouse_HMG_3	5	1	-	5.260715111750644	4.751625238765763	GCAATTTCATTGT
chr19	9987304	9987305	chr19:9987305:C:G	rs8100973	C	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	10008301	10008302	chr19:10008302:T:C	rs76715988	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr19	10031626	10031627	chr19:10031627:G:T	rs62106163	G	T	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr19	10145109	10145110	chr19:10145110:G:A	rs10412529	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	10197990	10197991	chr19:10197991:C:G	rs150293645	C	G	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	10378249	10378250	chr19:10378250:C:T	rs55762744	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr19	10378282	10378283	chr19:10378283:G:T	rs147251502	G	T	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr19	10378292	10378293	chr19:10378293:G:T	rs56295652	G	T	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr19	10461116	10461117	chr19:10461117:G:A	rs144860215	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	10505626	10505627	chr19:10505627:T:G	rs11668429	T	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr19	10654690	10654691	chr19:10654691:T:C	rs80257701	T	C	C	Sox1.mouse_HMG_3	4	1	+	3.5530527604427538	-3.3470432611718945	TCTCTTCCATTGT
chr19	10813262	10813263	chr19:10813263:G:A	rs745932426	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr19	10833363	10833364	chr19:10833364:A:G	rs12611335	A	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr19	11060162	11060163	chr19:11060163:T:C	rs7275	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.804427055858008	-2.104327723457212	TCACTGTCATCGT
chr19	11273530	11273531	chr19:11273531:C:G	rs1869772	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	11293598	11293599	chr19:11293599:C:T	rs1032955526	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr19	11754743	11754744	chr19:11754744:G:A	rs182415590	G	A	G	Sox1.mouse_HMG_3	11	1	+	3.802724594909805	-0.30711583607609283	TCAACAGCATCGA
chr19	11835764	11835765	chr19:11835765:T:C	rs35062986	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr19	11868348	11868349	chr19:11868349:T:C	rs10500209	T	C	T	Sox1.mouse_HMG_3	5	1	+	5.300913450561065	1.4885088955438808	TCAATTGCATGGT
chr19	11881424	11881425	chr19:11881425:C:A	rs142975919	C	A	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr19	11881445	11881446	chr19:11881446:G:A	rs73921177	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr19	11923612	11923613	chr19:11923613:T:G	rs569570449	T	G	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr19	12056553	12056554	chr19:12056554:C:T	rs73923372	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr19	12577591	12577592	chr19:12577592:G:C	rs139062350	G	C	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr19	12630709	12630710	chr19:12630710:T:A	rs118082271	T	A	t	Sox1.mouse_HMG_3	2	1	-	12.836477151926136	5.927722372610916	TCAATATCATTGT
chr19	12651968	12651969	chr19:12651969:T:C	rs17476839	T	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr19	12681562	12681563	chr19:12681563:G:A	rs11541391	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.216786174354869	1.5843186832596774	TCAATGCCATGGT
chr19	12681575	12681576	chr19:12681576:T:C	rs34610671	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr19	13156370	13156371	chr19:13156371:G:T	rs892020	G	T	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr19	13277321	13277322	chr19:13277322:T:C	rs77790205	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr19	13277334	13277335	chr19:13277335:G:T	rs570735131	G	T	G	Sox1.mouse_HMG_3	1	1	-	7.1337500074388664	0.2309972200795225	ACAATTTCATTCA
chr19	13790387	13790388	chr19:13790388:G:C	rs76243708	G	C	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr19	13825015	13825016	chr19:13825016:C:T	rs79438755	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr19	13866546	13866547	chr19:13866547:C:T	rs910301557	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr19	13900119	13900120	chr19:13900120:A:G	rs7507907	A	G	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr19	13913455	13913456	chr19:13913456:C:T	rs61740117	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr19	14496626	14496627	chr19:14496627:T:C	rs2017572	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr19	14892324	14892325	chr19:14892325:G:A	rs61734241	G	A	g	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr19	15020400	15020401	chr19:15020401:G:T	rs7248834	G	T	T	Sox1.mouse_HMG_3	6	1	+	3.2482444971262567	3.160129278794472	TCACTTGCATCCA
chr19	15038422	15038423	chr19:15038423:T:C	rs7248903	T	C	C	Sox1.mouse_HMG_3	0	1	+	5.206477831113791	-1.6457013109794942	TCCATTGCATTGC
chr19	15184322	15184323	chr19:15184323:G:A	rs1043996	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr19	15686598	15686599	chr19:15686599:T:A	rs645827	T	A	A	Sox1.mouse_HMG_3	5	1	-	4.285294416225533	3.5617115181433268	TCACTACCATAGT
chr19	15997391	15997392	chr19:15997392:A:G	rs10422944	A	G	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr19	16005714	16005715	chr19:16005715:G:T	rs10401940	G	T	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr19	16027760	16027761	chr19:16027761:G:T	rs74260224	G	T	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr19	16328686	16328687	chr19:16328687:C:T	rs4808485	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr19	16445410	16445411	chr19:16445411:G:C	rs79083128	G	C	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr19	16906103	16906104	chr19:16906104:T:C	rs111769143	T	C	t	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	17103361	17103362	chr19:17103362:G:A	rs529384273	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr19	17309355	17309356	chr19:17309356:T:C	rs11086068	T	C	T	Sox1.mouse_HMG_3	6	1	+	9.8629528629008	10.37603067801127	TCACTTTCATTGC
chr19	17309363	17309364	chr19:17309364:T:G	rs561198785	T	G	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr19	17337434	17337435	chr19:17337435:A:C	chr19:17337435:A:C	A	C	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr19	17402939	17402940	chr19:17402940:C:A	rs2245519	C	A	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	17622468	17622469	chr19:17622469:G:A	rs74551295	G	A	G	Sox1.mouse_HMG_3	6	1	+	4.654263218267754	5.1307791579229765	ACAAATGCATTGC
chr19	17636513	17636514	chr19:17636514:A:G	rs76245072	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.238385949108538	1.3514764413080311	TCAGTTCCATTGA
chr19	18389911	18389912	chr19:18389912:G:A	rs16982345	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr19	18460171	18460172	chr19:18460172:C:G	rs148501338	C	G	C	Sox1.mouse_HMG_3	3	1	+	5.300112112906827	0.6632494801862454	TCACTGCCATTCC
chr19	18724304	18724305	chr19:18724305:G:A	rs2051815	G	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr19	18724306	18724307	chr19:18724307:T:C	rs2051816	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr19	19032557	19032558	chr19:19032558:A:G	chr19:19032558:A:G	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr19	19032579	19032580	chr19:19032580:C:A	rs192291761	C	A	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr19	19032597	19032598	chr19:19032598:G:A	rs58514603	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr19	19411031	19411032	chr19:19411032:G:C	rs186976414	G	C	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr19	19451539	19451540	chr19:19451540:G:A	rs12972397	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr19	19752156	19752157	chr19:19752157:C:T	rs247790	C	T	c	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr19	19752160	19752161	chr19:19752161:G:C	rs8103257	G	C	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr19	19959546	19959547	chr19:19959547:A:G	rs529854852	A	G	a	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr19	19997873	19997874	chr19:19997874:G:C	rs796590171	G	C	c	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr19	20130120	20130121	chr19:20130121:T:A	rs6511081	T	A	.	Sox1.mouse_HMG_3	6	1	-	9.129743575397574	8.565112417410564	TCACTGACATTGG
chr19	20209381	20209382	chr19:20209382:A:C	rs73542118	A	C	.	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr19	20318843	20318844	chr19:20318844:A:C	rs12610232	A	C	.	Sox1.mouse_HMG_3	0	1	-	7.643413730240157	0.7912345881468716	TCAATGCCACTGA
chr19	20554311	20554312	chr19:20554312:C:T	rs12609067	C	T	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr19	20867122	20867123	chr19:20867123:C:T	rs59954926	C	T	c	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr19	20868030	20868031	chr19:20868031:T:C	rs11882347	T	C	-	Sox1.mouse_HMG_3	10	1	+	5.475261258918142	0.8400484631135272	TCACTTTCACTGA
chr19	20884116	20884117	chr19:20884117:A:G	rs11085401	A	G	-	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr19	20911007	20911008	chr19:20911008:A:G	rs147331181	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr19	20970176	20970177	chr19:20970177:C:T	rs13345292	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr19	21130119	21130120	chr19:21130120:A:G	rs2195454	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr19	21899730	21899731	chr19:21899731:C:G	rs185051881	C	G	c	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr19	22053592	22053593	chr19:22053593:C:A	rs6511314	C	A	.	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr19	23247429	23247430	chr19:23247430:T:C	rs10410902	T	C	-	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr19	23491689	23491690	chr19:23491690:G:A	rs10422559	G	A	.	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr19	23597960	23597961	chr19:23597961:C:T	rs35810115	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr19	23687138	23687139	chr19:23687139:A:G	rs2364625	A	G	G	Sox1.mouse_HMG_3	9	1	-	2.9541980835855806	-3.932711424214927	TCGCTTTCATTGC
chr19	23777728	23777729	chr19:23777729:C:T	rs115158089	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr19	24032804	24032805	chr19:24032805:A:T	rs118048293	A	T	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	24038925	24038926	chr19:24038926:G:C	rs67381910	G	C	G	Sox1.mouse_HMG_3	11	1	+	4.987666755973212	0.42083806385364797	ACATTTGCATTGA
chr19	24141663	24141664	chr19:24141664:G:A	rs59756985	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr19	24372136	24372137	chr19:24372137:C:T	rs2124632	C	T	.	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr19	24908000	24908001	chr19:24908001:G:T	rs1299623134	G	T	.	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr19	24908024	24908025	chr19:24908025:G:A	rs1488832963	G	A	.	Sox1.mouse_HMG_3	7	1	-	3.851673061746276	0.2192055706510836	TCTCTAGCATTGT
chr19	27640254	27640255	chr19:27640255:A:C	rs75232830	A	C	.	Sox1.mouse_HMG_3	8	1	+	6.150156637458316	-0.7585981418569041	ACACTATCATTAA
chr19	27720584	27720585	chr19:27720585:G:A	rs11670327	G	A	.	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr19	27749096	27749097	chr19:27749097:T:G	rs4805551	T	G	.	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr19	27829126	27829127	chr19:27829127:G:A	rs6510353	G	A	a	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr19	27844562	27844563	chr19:27844563:A:G	rs4805673	A	G	g	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr19	27894592	27894593	chr19:27894593:G:A	rs717661	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr19	28012829	28012830	chr19:28012830:G:T	rs9304864	G	T	G	Sox1.mouse_HMG_3	3	1	-	4.95674265955952	7.120907188755945	ACACAGACATTGA
chr19	28035229	28035230	chr19:28035230:C:A	rs551973267	C	A	C	Sox1.mouse_HMG_3	1	1	+	4.753059556507206	-2.1496932308521375	TCAACACCATTAA
chr19	28035237	28035238	chr19:28035238:T:G	rs73025331	T	G	T	Sox1.mouse_HMG_3	9	1	+	4.753059556507206	0.9849845193946729	TCAACACCATTAA
chr19	28227463	28227464	chr19:28227464:G:A	rs118045192	G	A	G	Sox1.mouse_HMG_3	12	1	-	9.918494147902928	10.004271009649631	TCACTGACATTGC
chr19	28307985	28307986	chr19:28307986:G:T	rs138814849	G	T	G	Sox1.mouse_HMG_3	12	1	+	3.453661567149443	4.328189001401499	TCTCTAACATTGG
chr19	28323258	28323259	chr19:28323259:T:C	rs2607211	T	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr19	28325464	28325465	chr19:28325465:C:A	rs75106928	C	A	C	Sox1.mouse_HMG_3	1	1	+	4.668207353516506	-2.2345454338428388	ACAATGTCATTAT
chr19	28474178	28474179	chr19:28474179:T:C	rs117318405	T	C	T	Sox1.mouse_HMG_3	3	1	-	11.481843156884748	4.680815994967743	TCAATATCAGTGA
chr19	28494472	28494473	chr19:28494473:T:C	rs6508907	T	C	C	Sox1.mouse_HMG_3	10	1	+	6.462750943372898	1.827538147568283	TCATTACCATTGC
chr19	28737107	28737108	chr19:28737108:A:G	rs113166443	A	G	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	28737148	28737149	chr19:28737149:G:A	rs10406794	G	A	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr19	28838743	28838744	chr19:28838744:A:G	rs6509071	A	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr19	29034903	29034904	chr19:29034904:T:C	rs10418577	T	C	C	Sox1.mouse_HMG_3	2	1	-	4.885152598629819	-2.023602180685401	TCACTGGCAGTGG
chr19	29069421	29069422	chr19:29069422:C:A	rs10406201	C	A	A	Sox1.mouse_HMG_3	12	1	-	4.409605706986639	5.284133141238696	TCAATGACATTTG
chr19	29090910	29090911	chr19:29090911:A:C	rs78855999	A	C	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr19	29118274	29118275	chr19:29118275:C:T	rs888303	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr19	29240702	29240703	chr19:29240703:A:G	rs34306318	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr19	29382894	29382895	chr19:29382895:C:A	rs8110676	C	A	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr19	29605738	29605739	chr19:29605739:C:A	rs944855423	C	A	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr19	29616713	29616714	chr19:29616714:C:T	rs2042970	C	T	t	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr19	29625221	29625222	chr19:29625222:G:A	rs79583940	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr19	29714943	29714944	chr19:29714944:A:G	rs186970109	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr19	29726298	29726299	chr19:29726299:A:C	rs6509623	A	C	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr19	29846219	29846220	chr19:29846220:A:C	rs4805487	A	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr19	30136408	30136409	chr19:30136409:G:T	rs335739	G	T	A	Sox1.mouse_HMG_3	12	1	-	2.4537669683012724	4.952984872119121	TCACTGTCATGGC
chr19	30165244	30165245	chr19:30165245:C:T	rs150851615	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr19	30230059	30230060	chr19:30230060:T:C	rs73021604	T	C	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr19	30267097	30267098	chr19:30267098:T:G	rs74724873	T	G	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr19	30418596	30418597	chr19:30418597:G:A	rs10406549	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr19	30428372	30428373	chr19:30428373:G:A	rs74852731	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr19	30443477	30443478	chr19:30443478:G:C	rs10411126	G	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	30558156	30558157	chr19:30558157:T:G	rs7250014	T	G	T	Sox1.mouse_HMG_3	8	1	-	7.039314045324566	0.13055926600934642	TCAATGGCATTCC
chr19	30601965	30601966	chr19:30601966:C:T	rs8099868	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr19	30726406	30726407	chr19:30726407:A:T	rs4805605	A	T	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr19	30831214	30831215	chr19:30831215:T:G	rs12980345	T	G	T	Sox1.mouse_HMG_3	6	1	-	6.415235426551794	6.363682083675256	TCAAGAACATTGC
chr19	30865085	30865086	chr19:30865086:G:A	rs117629373	G	A	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr19	30884677	30884678	chr19:30884678:G:A	rs12975535	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr19	31268182	31268183	chr19:31268183:G:A	rs6510196	G	A	A	Sox1.mouse_HMG_3	6	1	-	5.466062687229591	4.952984872119121	TCACGGCCATTGA
chr19	31409561	31409562	chr19:31409562:A:G	rs8103590	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr19	31838388	31838389	chr19:31838389:C:A	rs146264252	C	A	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr19	31909167	31909168	chr19:31909168:A:C	rs76996599	A	C	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr19	31943516	31943517	chr19:31943517:A:G	rs527495746	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr19	32012166	32012167	chr19:32012167:C:T	rs7245678	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr19	32017521	32017522	chr19:32017522:T:C	rs59302796	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr19	32104487	32104488	chr19:32104488:A:G	chr19:32104488:A:G	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr19	32373658	32373659	chr19:32373659:G:A	rs2868083	G	A	A	Sox1.mouse_HMG_3	11	1	+	5.475261258918142	1.365420827932243	TCACTTTCACTGA
chr19	32877159	32877160	chr19:32877160:C:T	rs34035782	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr19	32911112	32911113	chr19:32911113:G:A	rs62125027	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr19	32911794	32911795	chr19:32911795:G:A	rs12609689	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.141310156690645	1.5088426655954517	TCCATAGCATTGG
chr19	32944858	32944859	chr19:32944859:A:G	rs7251236	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr19	33009185	33009186	chr19:33009186:T:C	rs10425796	T	C	T	Sox1.mouse_HMG_3	6	1	+	4.872811159543058	5.385888974653531	TCACTGTCATTCT
chr19	33216799	33216800	chr19:33216800:G:A	rs7508758	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr19	33265163	33265164	chr19:33265164:C:T	rs10424624	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr19	33366491	33366492	chr19:33366492:T:G	rs4805874	T	G	G	Sox1.mouse_HMG_3	2	1	-	5.324204212844636	-1.5845505664705821	TCAAAATAATTGA
chr19	33394609	33394610	chr19:33394610:G:A	rs558664857	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr19	33397177	33397178	chr19:33397178:G:A	rs117490768	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr19	33478084	33478085	chr19:33478085:T:A	rs61748998	T	A	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr19	33483947	33483948	chr19:33483948:A:G	rs17834084	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.753059556507206	-2.1338499512933016	TCAACACCATTAA
chr19	33498228	33498229	chr19:33498229:G:C	rs3786918	G	C	G	Sox1.mouse_HMG_3	1	1	-	3.014761662933106	-3.887991124426239	CCACTGCCATTGC
chr19	33578869	33578870	chr19:33578870:G:A	rs62102169	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.230078172305809	1.5976106812106168	TCATTGCCATTGC
chr19	33660872	33660873	chr19:33660873:C:G	rs62103460	C	G	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	33705291	33705292	chr19:33705292:G:A	rs144665404	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr19	33831231	33831232	chr19:33831232:A:G	rs11084753	A	G	G	Sox1.mouse_HMG_3	2	1	+	8.765895514108529	1.8571407347933095	TCAAAAACATTGT
chr19	33885112	33885113	chr19:33885113:G:A	rs2017094	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr19	33953765	33953766	chr19:33953766:A:G	rs79666436	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.543387204756453	-2.3567088168581938	TCACTGGCATTAG
chr19	34119793	34119794	chr19:34119794:A:G	rs17337062	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr19	34181161	34181162	chr19:34181162:C:G	rs117558454	C	G	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr19	34181161	34181162	chr19:34181162:C:T	chr19:34181162:C:T	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr19	34254159	34254160	chr19:34254160:T:C	rs185583631	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr19	34254179	34254180	chr19:34254180:T:C	chr19:34254180:T:C	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr19	34314591	34314592	chr19:34314592:T:C	rs1669265	T	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr19	34592762	34592763	chr19:34592763:T:A	rs73038274	T	A	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr19	34801093	34801094	chr19:34801094:T:C	rs1270290	T	C	T	Sox1.mouse_HMG_3	10	1	+	3.4497930608166216	-1.1854197349879922	TCACAGTCAGTGA
chr19	34837071	34837072	chr19:34837072:C:T	rs76846494	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr19	34963310	34963311	chr19:34963311:G:T	rs2546027	G	T	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	35164691	35164692	chr19:35164692:C:T	rs78794409	C	T	N	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr19	35176288	35176289	chr19:35176289:G:A	rs7255878	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr19	35326810	35326811	chr19:35326811:G:A	rs8102910	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr19	35358280	35358281	chr19:35358281:C:T	rs143244108	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr19	35358281	35358282	chr19:35358282:G:A	rs58199607	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr19	35392104	35392105	chr19:35392105:G:A	rs75481361	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr19	35556471	35556472	chr19:35556472:T:C	rs11084823	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr19	35745424	35745425	chr19:35745425:A:G	rs185079492	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr19	35773233	35773234	chr19:35773234:C:T	chr19:35773234:C:T	C	T	C	Sox1.mouse_HMG_3	6	1	+	3.5748980319574657	3.061820216846995	TCACTTCCACTGT
chr19	36169544	36169545	chr19:36169545:A:G	rs1476503	A	G	g	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr19	36169551	36169552	chr19:36169552:A:G	rs1476504	A	G	g	Sox1.mouse_HMG_3	6	1	+	4.292427048379167	3.8159111087239457	TCAAAAACAATGA
chr19	36244355	36244356	chr19:36244356:G:C	rs2918382	G	C	N	Sox1.mouse_HMG_3	11	1	+	2.681383908309425	-1.8854447838101387	TCAAGACCAGTGT
chr19	37954054	37954055	chr19:37954055:A:G	rs7254248	A	G	A	Sox1.mouse_HMG_3	5	1	-	7.236169285459315	3.4237647304421324	TCAATTACATTCG
chr19	38744233	38744234	chr19:38744234:T:C	rs113275010	T	C	C	Sox1.mouse_HMG_3	4	1	+	2.6785253261906976	-4.221570695423951	TCTCTTCCATTGG
chr19	38744238	38744239	chr19:38744239:T:C	rs76443569	T	C	T	Sox1.mouse_HMG_3	9	1	+	2.6785253261906976	-4.20838418160981	TCTCTTCCATTGG
chr19	38794224	38794225	chr19:38794225:A:C	rs58406458	A	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr19	39104416	39104417	chr19:39104417:C:T	rs149772106	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr19	39378899	39378900	chr19:39378900:C:G	rs16973374	C	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr19	39431159	39431160	chr19:39431160:C:T	rs113745517	C	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	39520923	39520924	chr19:39520924:A:G	rs28612323	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr19	39608126	39608127	chr19:39608127:T:C	rs74528820	T	C	-	Sox1.mouse_HMG_3	9	1	+	6.02670590309101	-0.8602036047094974	TCACGTACATTGA
chr19	39704542	39704543	chr19:39704543:C:T	rs117106744	C	T	-	Sox1.mouse_HMG_3	8	1	+	2.9220016634835737	2.9220016634835737	TCACTACCCGTGA
chr19	39810712	39810713	chr19:39810713:A:G	rs79795592	A	G	A	Sox1.mouse_HMG_3	2	1	+	3.993771783205234	-2.914982996109987	TCAACTTTATTGA
chr19	39882888	39882889	chr19:39882889:T:C	rs1269211097	T	C	.	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr19	39913650	39913651	chr19:39913651:A:G	rs12459958	A	G	.	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr19	40085274	40085275	chr19:40085275:T:C	rs337799	T	C	C	Sox1.mouse_HMG_3	8	1	-	3.273109171557215	-3.6356456077580055	ACACTGCCAGTGC
chr19	40085301	40085302	chr19:40085302:A:G	rs337800	A	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	40137094	40137095	chr19:40137095:A:C	rs73551655	A	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	40163957	40163958	chr19:40163958:G:A	rs75857113	G	A	g	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr19	40445963	40445964	chr19:40445964:A:T	rs563054185	A	T	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr19	40463295	40463296	chr19:40463296:C:T	rs2613843	C	T	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr19	40726306	40726307	chr19:40726307:C:G	rs141182844	C	G	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr19	40888196	40888197	chr19:40888197:A:G	rs117683060	A	G	A	Sox1.mouse_HMG_3	6	1	+	7.069496125193776	6.592980185538554	TCAAAAACATTAA
chr19	41016964	41016965	chr19:41016965:C:A	rs28399502	C	A	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	41032086	41032087	chr19:41032087:C:T	rs10409738	C	T	C	Sox1.mouse_HMG_3	5	1	-	2.1912807247205293	3.4239534957876177	TCACTGCCAATGG
chr19	41444360	41444361	chr19:41444361:A:G	rs17265865	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.847947502820089	-1.0389620049804196	TAAATATCATTGC
chr19	41530824	41530825	chr19:41530825:C:A	rs74394525	C	A	-	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr19	41648996	41648997	chr19:41648997:T:G	rs2016082	T	G	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr19	42075410	42075411	chr19:42075411:C:T	rs1299062568	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr19	42075421	42075422	chr19:42075422:C:G	rs143455202	C	G	C	Sox1.mouse_HMG_3	12	1	-	8.412610223235227	9.20136079574058	ACAATTTCATTGG
chr19	42121400	42121401	chr19:42121401:T:C	rs115051406	T	C	T	Sox1.mouse_HMG_3	5	1	-	5.1609225557570735	3.9282497846899855	TCAGTATCATTGG
chr19	42515710	42515711	chr19:42515711:G:T	rs10404589	G	T	t	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr19	42540105	42540106	chr19:42540106:A:G	rs6509017	A	G	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr19	42914901	42914902	chr19:42914902:A:G	rs10413886	A	G	.	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr19	42923473	42923474	chr19:42923474:A:G	rs10409077	A	G	.	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr19	43043694	43043695	chr19:43043695:T:C	rs10420903	T	C	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr19	43224883	43224884	chr19:43224884:T:A	rs4028450	T	A	.	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr19	43448285	43448286	chr19:43448286:G:A	rs79399417	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr19	43448300	43448301	chr19:43448301:C:T	rs2599473	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	43580002	43580003	chr19:43580003:G:A	rs184239	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr19	43789125	43789126	chr19:43789126:T:C	rs8104447	T	C	T	Sox1.mouse_HMG_3	2	1	-	8.448891032080276	1.5401362527650557	TCAGTATCATTGA
chr19	44367213	44367214	chr19:44367214:T:C	rs16978991	T	C	-	Sox1.mouse_HMG_3	4	1	+	5.462074745104003	-1.438021276510645	TCACTTTCATGGA
chr19	44538507	44538508	chr19:44538508:A:C	rs17714646	A	C	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr19	44774328	44774329	chr19:44774329:G:A	rs57816145	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr19	45162140	45162141	chr19:45162141:A:C	rs540358672	A	C	A	Sox1.mouse_HMG_3	9	1	-	5.001970815661874	1.2338957785493405	TCATTTACATTGG
chr19	45162151	45162152	chr19:45162152:C:T	rs113466049	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr19	45162159	45162160	chr19:45162160:G:A	chr19:45162160:G:A	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr19	45174056	45174057	chr19:45174057:T:C	rs12460041	T	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr19	45403323	45403324	chr19:45403324:C:T	chr19:45403324:C:T	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	45518255	45518256	chr19:45518256:C:T	rs2239378	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr19	45543796	45543797	chr19:45543797:T:G	rs73942917	T	G	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr19	45809846	45809847	chr19:45809847:C:T	rs16980027	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr19	45999535	45999536	chr19:45999536:T:C	rs17652418	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr19	46133842	46133843	chr19:46133843:T:C	rs11666311	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr19	46189589	46189590	chr19:46189590:G:A	rs114994741	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr19	46209939	46209940	chr19:46209940:C:T	rs2253940	C	T	c	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	46367044	46367045	chr19:46367045:T:C	rs2239380	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr19	46455749	46455750	chr19:46455750:C:A	rs4803953	C	A	c	Sox1.mouse_HMG_3	6	1	-	3.1388670428120755	3.0507518244802907	TCTATTGCATTCA
chr19	46460179	46460180	chr19:46460180:C:G	rs10418204	C	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr19	46473819	46473820	chr19:46473820:C:T	rs189464510	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr19	46618970	46618971	chr19:46618971:T:C	rs1490863573	T	C	T	Sox1.mouse_HMG_3	5	1	-	3.706799370518397	2.4741265994513086	TCACTATGATTGC
chr19	46661454	46661455	chr19:46661455:G:A	rs150695561	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr19	46661462	46661463	chr19:46661463:G:C	rs182541418	G	C	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr19	46661719	46661720	chr19:46661720:T:A	chr19:46661720:T:A	T	A	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr19	46661721	46661722	chr19:46661722:C:T	chr19:46661722:C:T	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr19	46661728	46661729	chr19:46661729:G:A	rs314667	G	A	A	Sox1.mouse_HMG_3	7	1	-	3.7773974274306155	0.1449299363354224	ACAATTTCATCGG
chr19	46661745	46661746	chr19:46661746:G:C	rs1426067200	G	C	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr19	46672270	46672271	chr19:46672271:T:C	rs2871987	T	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr19	47048742	47048743	chr19:47048743:C:G	rs185998124	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr19	47049587	47049588	chr19:47049588:T:C	rs569428513	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr19	47137961	47137962	chr19:47137962:C:T	rs928973122	C	T	C	Sox1.mouse_HMG_3	6	1	+	3.8166723593685554	3.3035945442580847	TCACTTCAAGTGA
chr19	47233047	47233048	chr19:47233048:A:G	rs79188018	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr19	47233071	47233072	chr19:47233072:C:T	rs28460069	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr19	47241680	47241681	chr19:47241681:T:C	rs35611177	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr19	47391509	47391510	chr19:47391510:T:G	chr19:47391510:T:G	T	G	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr19	47600398	47600399	chr19:47600399:T:C	chr19:47600399:T:C	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr19	47659454	47659455	chr19:47659455:C:T	rs11083887	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr19	47723324	47723325	chr19:47723325:A:T	rs3112493	A	T	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr19	47728988	47728989	chr19:47728989:C:T	rs11672818	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	47858816	47858817	chr19:47858817:G:T	rs55636705	G	T	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr19	47900918	47900919	chr19:47900919:C:T	rs1017993	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr19	48011010	48011011	chr19:48011011:C:T	rs62129070	C	T	t	Sox1.mouse_HMG_3	5	1	-	5.329799420676723	6.562472191743812	TCACTGTCATTAT
chr19	48137549	48137550	chr19:48137550:C:T	rs4987068	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr19	48185425	48185426	chr19:48185426:T:C	rs12460905	T	C	c	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr19	48260491	48260492	chr19:48260492:T:C	rs4802451	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr19	48290944	48290945	chr19:48290945:C:T	rs12462913	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.3010880402328215	0.6686205491376289	TCACTACCATTTT
chr19	48330309	48330310	chr19:48330310:T:G	chr19:48330310:T:G	T	G	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr19	48330350	48330351	chr19:48330351:A:G	rs4893	A	G	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr19	48589643	48589644	chr19:48589644:A:G	rs73944836	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.204056946101575	1.4030297841845687	TCAATTACAATGA
chr19	48703727	48703728	chr19:48703728:G:A	rs602662	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr19	48776777	48776778	chr19:48776778:C:T	rs599486	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr19	49021036	49021037	chr19:49021037:C:G	rs143151537	C	G	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr19	49641831	49641832	chr19:49641832:C:A	rs760890135	C	A	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr19	49678471	49678472	chr19:49678472:G:C	rs117146366	G	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr19	49874885	49874886	chr19:49874886:T:C	rs11083985	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr19	49877379	49877380	chr19:49877380:T:C	rs114169993	T	C	T	Sox1.mouse_HMG_3	12	1	+	4.748056600855966	4.6622797391092625	TCAATTCCAGTAT
chr19	50136345	50136346	chr19:50136346:T:G	rs56215721	T	G	-	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr19	50144277	50144278	chr19:50144278:G:T	rs181785253	G	T	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr19	50350094	50350095	chr19:50350095:T:C	rs7248968	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr19	50555830	50555831	chr19:50555831:A:G	rs12610929	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.196860788734135	-2.7118939905810864	TGACTACCATTGC
chr19	50792763	50792764	chr19:50792764:C:T	rs67367861	C	T	t	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr19	50831098	50831099	chr19:50831099:T:C	rs2560935	T	C	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr19	51155573	51155574	chr19:51155574:G:A	rs273664	G	A	G	Sox1.mouse_HMG_3	10	1	-	7.056706803386218	11.691919599190832	TCAATGGCATCGT
chr19	51268029	51268030	chr19:51268030:G:A	rs7258998	G	A	.	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr19	51659802	51659803	chr19:51659803:A:G	rs7248908	A	G	G	Sox1.mouse_HMG_3	5	1	+	4.395140155071182	3.162467384004094	TCAGTACCATTCA
chr19	51820300	51820301	chr19:51820301:T:C	rs78544165	T	C	t	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr19	51820301	51820302	chr19:51820302:T:C	rs74526737	T	C	t	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr19	51821840	51821841	chr19:51821841:G:C	rs763782	G	C	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr19	52028817	52028818	chr19:52028818:G:A	rs141676394	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.768339133249473	1.1314765005288925	ACACTTTCAGTGA
chr19	52521729	52521730	chr19:52521730:C:G	rs4802968	C	G	N	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr19	52658848	52658849	chr19:52658849:T:C	rs7246133	T	C	N	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr19	52735756	52735757	chr19:52735757:C:G	rs8112235	C	G	c	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr19	52738974	52738975	chr19:52738975:T:A	rs34244888	T	A	t	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr19	52957607	52957608	chr19:52957608:G:A	rs11084211	G	A	N	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr19	53133352	53133353	chr19:53133353:T:C	rs28370368	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr19	53193972	53193973	chr19:53193973:A:G	rs11673508	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr19	53223721	53223722	chr19:53223722:C:T	rs10425196	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr19	53264316	53264317	chr19:53264317:C:T	rs2965265	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr19	53569502	53569503	chr19:53569503:C:T	rs3746304	C	T	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr19	53569527	53569528	chr19:53569528:T:C	rs3746303	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr19	53572335	53572336	chr19:53572336:A:G	rs16985046	A	G	A	Sox1.mouse_HMG_3	4	1	-	7.878204920812509	0.9781088991978621	TTAATATCATTGT
chr19	53773147	53773148	chr19:53773148:T:C	rs11084281	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr19	53785591	53785592	chr19:53785592:C:G	rs3848580	C	G	c	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr19	53795321	53795322	chr19:53795322:C:T	rs10418264	C	T	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr19	53830803	53830804	chr19:53830804:A:T	rs73056718	A	T	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr19	53842506	53842507	chr19:53842507:A:T	rs142919166	A	T	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr19	53877763	53877764	chr19:53877764:A:G	rs28465495	A	G	a	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr19	54110939	54110940	chr19:54110940:G:C	rs73062626	G	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr19	54204777	54204778	chr19:54204778:G:A	rs3844452	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr19	54287933	54287934	chr19:54287934:G:A	rs397600	G	A	a	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr19	54489605	54489606	chr19:54489606:A:G	rs79543930	A	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr19	54499183	54499184	chr19:54499184:T:C	rs28416031	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.570278221375927	-2.338476557939292	TCAAAAACATTAC
chr19	54738369	54738370	chr19:54738370:A:G	rs10414999	A	G	.	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr19	54742313	54742314	chr19:54742314:A:C	rs35927204	A	C	.	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr19	54786177	54786178	chr19:54786178:C:T	rs1489235309	C	T	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr19	54803984	54803985	chr19:54803985:A:G	rs597598	A	G	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr19	54810734	54810735	chr19:54810735:T:C	rs617907	T	C	.	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr19	55121674	55121675	chr19:55121675:C:T	rs890869	C	T	T	Sox1.mouse_HMG_3	9	1	+	5.281526031045548	12.168435538846055	TCAATGACACTGT
chr19	55158503	55158504	chr19:55158504:C:G	rs10422978	C	G	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr19	55166687	55166688	chr19:55166688:G:A	chr19:55166688:G:A	G	A	g	Sox1.mouse_HMG_3	1	1	-	5.261797735378261	0.3035255042646363	TCACTCTCATTGG
chr19	55166691	55166692	chr19:55166692:G:A	rs73066642	G	A	g	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr19	55167319	55167320	chr19:55167320:C:G	rs7255625	C	G	g	Sox1.mouse_HMG_3	1	1	+	3.604514061646314	-3.29823872571303	TCAACTGCATTAA
chr19	55167344	55167345	chr19:55167345:C:T	rs60799292	C	T	c	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr19	55327903	55327904	chr19:55327904:T:C	rs8105530	T	C	-	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr19	55398341	55398342	chr19:55398342:C:A	rs12977341	C	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr19	55766898	55766899	chr19:55766899:G:A	rs67507026	G	A	-	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr19	56105811	56105812	chr19:56105812:G:A	rs665846	G	A	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr19	56132500	56132501	chr19:56132501:G:T	rs189447122	G	T	G	Sox1.mouse_HMG_3	12	1	+	5.310115195408503	6.18464262966056	TCACTGCCAGTGG
chr19	56321555	56321556	chr19:56321556:C:G	rs142139993	C	G	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr19	56369374	56369375	chr19:56369375:G:C	rs12972381	G	C	G	Sox1.mouse_HMG_3	5	1	-	4.2125153029474856	7.5158299849797885	TCAATCACATTCC
chr19	56864238	56864239	chr19:56864239:T:C	rs746443855	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr19	56906141	56906142	chr19:56906142:A:G	rs8100148	A	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr19	56906143	56906144	chr19:56906144:G:C	rs8100425	G	C	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr19	56941977	56941978	chr19:56941978:C:A	rs62130849	C	A	a	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr19	56966651	56966652	chr19:56966652:C:T	rs10423480	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr19	56983514	56983515	chr19:56983515:G:T	rs73936731	G	T	G	Sox1.mouse_HMG_3	11	1	+	3.1987397522866314	-3.685562645320728	ACAATAGCATGGT
chr19	56988175	56988176	chr19:56988176:C:T	rs1108543	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr19	56988209	56988210	chr19:56988210:A:G	rs1108544	A	G	a	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr19	57052256	57052257	chr19:57052257:C:T	rs116846217	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr19	57270282	57270283	chr19:57270283:C:G	rs55836057	C	G	C	Sox1.mouse_HMG_3	6	1	+	5.824944907037393	5.399982310258707	TCAGTTCCATTGT
chr19	57273265	57273266	chr19:57273266:T:C	rs13344199	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr19	57278550	57278551	chr19:57278551:G:A	rs113836204	G	A	G	Sox1.mouse_HMG_3	5	1	+	3.009739368587708	4.242412139654796	TCCCTGACATTGC
chr19	57375070	57375071	chr19:57375071:C:T	rs111871875	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr19	57415452	57415453	chr19:57415453:G:A	rs10412943	G	A	G	Sox1.mouse_HMG_3	7	1	-	3.1493959638578293	-0.4830715272373636	ACACCTCCATTGA
chr19	57579449	57579450	chr19:57579450:C:A	rs727963	C	A	C	Sox1.mouse_HMG_3	1	1	+	3.5638296395907605	-3.338923147768584	TCAATTCCTTTCA
chr19	57721958	57721959	chr19:57721959:C:T	rs34992798	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr19	57737661	57737662	chr19:57737662:A:G	rs35213303	A	G	A	Sox1.mouse_HMG_3	8	1	+	3.037909005797367	-3.870845773517853	TCCAAGACATTGA
chr19	57774690	57774691	chr19:57774691:G:T	rs9749314	G	T	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr19	57847175	57847176	chr19:57847176:G:C	rs2007552	G	C	.	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr19	57877891	57877892	chr19:57877892:C:G	rs13343787	C	G	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr19	58099467	58099468	chr19:58099468:T:C	rs1019489	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr19	58372794	58372795	chr19:58372795:G:T	rs62116388	G	T	t	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr19	58406622	58406623	chr19:58406623:G:A	chr19:58406623:G:A	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.3712420522983635	0.2614016213124657	TCAATTCCAGGGA
chr19	58406622	58406623	chr19:58406623:G:C	rs8106061	G	C	G	Sox1.mouse_HMG_3	11	1	+	4.3712420522983635	-0.19558663982119961	TCAATTCCAGGGA
chr19	58585016	58585017	chr19:58585017:C:T	rs112047932	C	T	c	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	444922	444923	chr2:444923:T:G	rs2685233	T	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	646144	646145	chr2:646145:T:C	rs11127491	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	646158	646159	chr2:646159:G:A	rs35941143	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	747984	747985	chr2:747985:G:A	rs6761058	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	748028	748029	chr2:748029:G:A	rs113912290	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	881867	881868	chr2:881868:A:G	rs62103910	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	881868	881869	chr2:881869:C:T	rs11127530	C	T	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	905925	905926	chr2:905926:A:T	rs12993793	A	T	A	Sox1.mouse_HMG_3	8	1	+	9.441978208247704	2.533223428932485	TCACTGGCATTGC
chr2	925225	925226	chr2:925226:C:T	rs4435490	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	1423014	1423015	chr2:1423015:G:A	rs2276701	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	1435492	1435493	chr2:1435493:T:G	rs1514685	T	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	1519421	1519422	chr2:1519422:T:C	rs28913033	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	1538886	1538887	chr2:1538887:T:C	rs138956821	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	1564068	1564069	chr2:1564069:A:G	rs11886696	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	1564077	1564078	chr2:1564078:C:A	rs7591940	C	A	A	Sox1.mouse_HMG_3	11	1	-	2.966844783411744	-3.9174576141956154	TCACTGCCATGGC
chr2	1604993	1604994	chr2:1604994:A:G	rs113247363	A	G	A	Sox1.mouse_HMG_3	6	1	+	5.517616030106129	5.041100090450907	TCACCGACATTGA
chr2	1978379	1978380	chr2:1978380:C:T	rs6727561	C	T	T	Sox1.mouse_HMG_3	3	1	+	7.795252479452827	3.158389846732245	TCACTATAATTGA
chr2	2010665	2010666	chr2:2010666:T:G	rs73190457	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	2601984	2601985	chr2:2601985:G:T	rs7556672	G	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr2	2605602	2605603	chr2:2605603:C:T	rs4853903	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	2642900	2642901	chr2:2642901:G:A	rs77901164	G	A	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	2750930	2750931	chr2:2750931:T:C	rs17038881	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	2802033	2802034	chr2:2802034:C:T	rs115419251	C	T	C	Sox1.mouse_HMG_3	6	1	-	3.901793454607447	4.37830939426267	TCATAAGCATTGA
chr2	2961307	2961308	chr2:2961308:G:A	rs62104548	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	3077270	3077271	chr2:3077271:A:G	rs6705890	A	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	3214751	3214752	chr2:3214752:T:C	rs79267640	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	3302580	3302581	chr2:3302581:G:A	rs80274430	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	3302623	3302624	chr2:3302624:G:A	rs552792463	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	3315148	3315149	chr2:3315149:C:T	rs10194678	C	T	c	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	3322645	3322646	chr2:3322646:A:G	rs11902010	A	G	a	Sox1.mouse_HMG_3	8	1	+	8.1366603236662	1.2279055443509794	TGAATTCCATTGA
chr2	3369213	3369214	chr2:3369214:T:A	rs62119534	T	A	T	Sox1.mouse_HMG_3	9	1	+	9.959506603795509	3.0725970959950026	TCAATTTCATTCA
chr2	3452734	3452735	chr2:3452735:T:C	rs10207406	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	3780502	3780503	chr2:3780503:T:C	rs17018009	T	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	3789191	3789192	chr2:3789192:A:G	rs11676551	A	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	3834586	3834587	chr2:3834587:A:G	rs2034730	A	G	A	Sox1.mouse_HMG_3	8	1	+	9.951068081232584	3.0423133019173654	TCACTTGCATTGC
chr2	4067200	4067201	chr2:4067201:C:T	rs62109009	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	4332713	4332714	chr2:4332714:G:C	rs78605304	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.2041394745287075	-1.6986133128306375	TCAATTTCTTTGT
chr2	4356474	4356475	chr2:4356475:A:G	rs12476119	A	G	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	4903523	4903524	chr2:4903524:T:C	rs13429442	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	5286128	5286129	chr2:5286129:G:A	rs12479127	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	5315875	5315876	chr2:5315876:A:T	rs6752772	A	T	A	Sox1.mouse_HMG_3	5	1	-	5.2259847460434194	5.9495676441256276	TCAATTTCACTGT
chr2	5537660	5537661	chr2:5537661:A:C	rs11687637	A	C	a	Sox1.mouse_HMG_3	2	1	+	7.973366515088131	1.0646117357729126	TCAATTCCATTCC
chr2	5593298	5593299	chr2:5593299:C:A	rs17363613	C	A	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	5618713	5618714	chr2:5618714:G:T	rs80265459	G	T	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	5618714	5618715	chr2:5618715:A:T	rs79693745	A	T	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	5742430	5742431	chr2:5742431:G:A	rs12053114	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	6454840	6454841	chr2:6454841:T:C	rs1585535	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	6572417	6572418	chr2:6572418:T:G	rs10186870	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	6572423	6572424	chr2:6572424:A:G	rs35660926	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	7010942	7010943	chr2:7010943:A:G	rs412098	A	G	G	Sox1.mouse_HMG_3	2	1	+	5.1657625383985035	-1.7429922409167147	TCAATAGCATTTG
chr2	7338765	7338766	chr2:7338766:G:A	rs4668540	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	7376045	7376046	chr2:7376046:G:A	rs62104750	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	7420115	7420116	chr2:7420116:A:T	rs16866222	A	T	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	7735619	7735620	chr2:7735620:T:C	rs116637960	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	7764092	7764093	chr2:7764093:T:C	rs6742152	T	C	t	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	7867971	7867972	chr2:7867972:A:G	rs142728575	A	G	a	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	8150588	8150589	chr2:8150589:C:T	rs11695288	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	8242164	8242165	chr2:8242165:A:G	rs10929515	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	8289189	8289190	chr2:8289190:G:A	rs410538	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	8333907	8333908	chr2:8333908:G:A	rs59808848	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr2	8333924	8333925	chr2:8333925:C:T	rs2630741	C	T	T	Sox1.mouse_HMG_3	9	1	-	5.772469354689434	2.65363488400146	TCACTAACAGTAA
chr2	8333944	8333945	chr2:8333945:A:G	rs2561999	A	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	8447712	8447713	chr2:8447713:G:A	rs146424500	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	8465000	8465001	chr2:8465001:G:A	rs1875812	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	8534762	8534763	chr2:8534763:G:A	rs79391340	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	8543055	8543056	chr2:8543056:G:A	rs6748522	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	8578299	8578300	chr2:8578300:A:C	rs11904418	A	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	8603237	8603238	chr2:8603238:T:C	rs13384855	T	C	t	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	8637105	8637106	chr2:8637106:G:A	rs139618725	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	8697504	8697505	chr2:8697505:A:T	rs12472367	A	T	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	8827614	8827615	chr2:8827615:C:A	rs12053486	C	A	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	9250113	9250114	chr2:9250114:G:A	rs904954716	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr2	9745368	9745369	chr2:9745369:C:G	rs11675965	C	G	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	9758172	9758173	chr2:9758173:T:C	rs112990746	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.514304286249436	-0.3944504930657853	TCAGTAACATTGC
chr2	9807977	9807978	chr2:9807978:A:G	rs4669468	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	9907366	9907367	chr2:9907367:G:A	rs16867226	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	9907377	9907378	chr2:9907378:A:G	rs6744203	A	G	G	Sox1.mouse_HMG_3	10	1	-	4.719233229643624	0.08402043383900959	TCAATGGCACTGC
chr2	9969151	9969152	chr2:9969152:T:C	rs731169	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.612180794357776	-1.2747287134427308	ACAACAGCATTGA
chr2	9974284	9974285	chr2:9974285:T:G	rs6733974	T	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	9981827	9981828	chr2:9981828:C:T	rs72784441	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	10072564	10072565	chr2:10072565:C:T	rs6756059	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	10246283	10246284	chr2:10246284:G:C	rs11688174	G	C	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	10442069	10442070	chr2:10442070:C:T	rs28362407	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	10445560	10445561	chr2:10445561:T:C	rs10490728	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.573088377569528	-2.227938784347477	TCCATATCAGTGA
chr2	10478144	10478145	chr2:10478145:T:C	rs529934944	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	10823686	10823687	chr2:10823687:A:G	rs115983125	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	10890256	10890257	chr2:10890257:C:T	rs16856834	C	T	T	Sox1.mouse_HMG_3	7	1	+	4.219028433987919	0.5865609428927263	TCTAAACCATTGA
chr2	10932865	10932866	chr2:10932866:G:A	rs1453088	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	11011325	11011326	chr2:11011326:C:T	rs13022057	C	T	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	11204377	11204378	chr2:11204378:T:C	rs17366643	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	11204387	11204388	chr2:11204388:T:C	rs17366657	T	C	T	Sox1.mouse_HMG_3	9	1	-	4.292427048379167	7.411261519067143	TCAAAAACAATGA
chr2	11345605	11345606	chr2:11345606:C:G	rs1400508478	C	G	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	11392227	11392228	chr2:11392228:C:T	rs13001631	C	T	C	Sox1.mouse_HMG_3	5	1	-	4.339601974358118	5.572274745425204	TGAATGCCATTGG
chr2	11556679	11556680	chr2:11556680:C:T	rs16857629	C	T	C	Sox1.mouse_HMG_3	10	1	+	7.578443718864289	12.213656514668902	ACAATTCCATCGA
chr2	11697602	11697603	chr2:11697603:G:A	rs116104640	G	A	G	Sox1.mouse_HMG_3	6	1	-	6.542787966475592	6.029710151365121	TCACTACCAGTGG
chr2	11825215	11825216	chr2:11825216:G:A	rs74564998	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	11933323	11933324	chr2:11933324:G:C	rs7598815	G	C	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	12097292	12097293	chr2:12097293:G:A	rs12478548	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	12164956	12164957	chr2:12164957:G:A	rs6722884	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	12396942	12396943	chr2:12396943:C:G	rs73197684	C	G	C	Sox1.mouse_HMG_3	11	1	-	5.453415987403428	0.8865872952838649	TCACTTTCCTTGA
chr2	12396968	12396969	chr2:12396969:A:G	rs1477119890	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	12760652	12760653	chr2:12760653:G:A	rs17390839	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	12812066	12812067	chr2:12812067:A:G	rs7597914	A	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	12815722	12815723	chr2:12815723:T:C	rs1544852	T	C	t	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	14573029	14573030	chr2:14573030:T:C	rs13412374	T	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	14779346	14779347	chr2:14779347:T:A	rs2705848	T	A	T	Sox1.mouse_HMG_3	2	1	-	5.365113835930792	-1.5436409433844278	ACAACTACATTGA
chr2	15128619	15128620	chr2:15128620:A:T	rs6431675	A	T	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	15182452	15182453	chr2:15182453:G:A	rs6730450	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	15591458	15591459	chr2:15591459:C:T	rs3755133	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	15591480	15591481	chr2:15591481:C:T	rs4668936	C	T	C	Sox1.mouse_HMG_3	3	1	+	8.65322763574235	4.016365003021772	TCACTGGCATTGG
chr2	15635490	15635491	chr2:15635491:G:A	rs807631	G	A	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	15818348	15818349	chr2:15818349:A:G	rs565412147	A	G	A	Sox1.mouse_HMG_3	9	1	-	11.23836681959187	4.351457311791364	TCAATTTCATTGG
chr2	15825620	15825621	chr2:15825621:T:G	rs16863068	T	G	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	15989859	15989860	chr2:15989860:C:T	rs77669638	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	16130024	16130025	chr2:16130025:T:A	rs141026745	T	A	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	16167730	16167731	chr2:16167731:G:A	rs36135433	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	16588809	16588810	chr2:16588810:T:C	rs10178754	T	C	T	Sox1.mouse_HMG_3	5	1	-	5.674000370867544	4.441327599800456	TCATTACCATTGG
chr2	16747387	16747388	chr2:16747388:C:A	rs1722409	C	A	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	17056414	17056415	chr2:17056415:T:C	rs6745510	T	C	C	Sox1.mouse_HMG_3	0	1	+	4.525454876006652	-2.326724266086633	TCATTTGCATTGG
chr2	17101318	17101319	chr2:17101319:T:C	rs1606940	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.727541006446353	0.9265138445293462	TCAATTGCAATGA
chr2	17315869	17315870	chr2:17315870:G:A	rs1519973	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	17332154	17332155	chr2:17332155:T:C	rs62125596	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	17519966	17519967	chr2:17519967:G:A	rs11885715	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	17607475	17607476	chr2:17607476:G:T	rs62132143	G	T	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	18476532	18476533	chr2:18476533:T:A	rs11680595	T	A	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	18559482	18559483	chr2:18559483:A:G	rs34722188	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr2	18745901	18745902	chr2:18745902:T:C	rs4832452	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	18891573	18891574	chr2:18891574:A:G	rs61197957	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr2	19130764	19130765	chr2:19130765:A:G	rs140706629	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.259680759530836	0.6244679637262214	TCCATGACATTGT
chr2	19607986	19607987	chr2:19607987:A:G	rs6750652	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	19769594	19769595	chr2:19769595:T:C	rs13394456	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	20209997	20209998	chr2:20209998:A:G	rs3771249	A	G	A	Sox1.mouse_HMG_3	8	1	+	9.129743575397574	2.2209887960823544	TCACTGACATTGG
chr2	20245877	20245878	chr2:20245878:T:C	rs2110410	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	20458757	20458758	chr2:20458758:C:A	rs4666398	C	A	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	20492064	20492065	chr2:20492065:C:T	rs10445844	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	20575825	20575826	chr2:20575826:A:C	rs148788376	A	C	A	Sox1.mouse_HMG_3	10	1	-	6.700956327617327	-0.19913969399732134	TCACTCACATTGT
chr2	20625845	20625846	chr2:20625846:A:T	chr2:20625846:A:T	A	T	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr2	20629431	20629432	chr2:20629432:A:G	rs10187254	A	G	G	Sox1.mouse_HMG_3	8	1	+	5.517616030106131	-1.3911387492090905	TCACTGACATGGA
chr2	20682673	20682674	chr2:20682674:T:C	rs56220106	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.831355681079655	0.9444461732791485	TCACTGGCATTAA
chr2	20682688	20682689	chr2:20682689:A:G	rs13382862	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	20727829	20727830	chr2:20727830:T:C	rs4971544	T	C	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	20961974	20961975	chr2:20961975:A:G	rs17397667	A	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	20983310	20983311	chr2:20983311:T:G	rs6754295	T	G	T	Sox1.mouse_HMG_3	0	1	-	4.6331769225391835	0.6067543768025419	ACAATCCCAGTGA
chr2	20984033	20984034	chr2:20984034:C:T	rs56403064	C	T	T	Sox1.mouse_HMG_3	7	1	+	5.304901735353681	1.6724342442584887	ACAATTCCGTTGA
chr2	21181662	21181663	chr2:21181663:G:T	rs59056084	G	T	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	21301956	21301957	chr2:21301957:A:C	rs391070	A	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	21315937	21315938	chr2:21315938:A:C	rs219548	A	C	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	21607756	21607757	chr2:21607757:A:G	rs1476119	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	21782272	21782273	chr2:21782273:G:A	rs11689185	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	21856897	21856898	chr2:21856898:C:T	rs1519491	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	22220967	22220968	chr2:22220968:G:A	rs4557006	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	22335736	22335737	chr2:22335737:A:G	rs4558612	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	22759025	22759026	chr2:22759026:A:G	rs12053564	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	22802155	22802156	chr2:22802156:G:A	rs13384029	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.369058213845017	1.2592177828591193	TCACTGACATCGT
chr2	23056970	23056971	chr2:23056971:A:G	rs4665194	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	23201052	23201053	chr2:23201053:G:A	rs57493014	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	23220886	23220887	chr2:23220887:T:A	rs11678560	T	A	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	23273811	23273812	chr2:23273812:G:A	rs56262645	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	23285169	23285170	chr2:23285170:C:T	rs34506372	C	T	C	Sox1.mouse_HMG_3	6	1	-	8.814751939272021	9.291267878927247	TCAATAGCATTAT
chr2	23411768	23411769	chr2:23411769:G:A	rs115595406	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	23465057	23465058	chr2:23465058:T:C	rs77418123	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	23901075	23901076	chr2:23901076:A:G	rs77724890	A	G	a	Sox1.mouse_HMG_3	11	1	+	7.507610271916191	11.617450702902088	TCAATATTATTAA
chr2	23912163	23912164	chr2:23912164:A:G	rs12616257	A	G	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	24012103	24012104	chr2:24012104:T:C	rs2339938	T	C	C	Sox1.mouse_HMG_3	5	1	-	13.263778105289903	12.031105334222813	TCAATACCATTGC
chr2	24078111	24078112	chr2:24078112:T:G	rs145401701	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	24817553	24817554	chr2:24817554:G:A	rs10178420	G	A	A	Sox1.mouse_HMG_3	7	1	-	7.850883359601214	4.218415868506021	TCACTGACATTCA
chr2	24827537	24827538	chr2:24827538:G:A	rs116538472	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	24859239	24859240	chr2:24859240:G:A	rs76259681	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr2	24893913	24893914	chr2:24893914:C:T	rs6545795	C	T	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	25196821	25196822	chr2:25196822:C:T	rs12617514	C	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	25268186	25268187	chr2:25268187:A:G	rs7583409	A	G	A	Sox1.mouse_HMG_3	8	1	+	7.507610271916191	0.5988554926009702	TCAATATTATTAA
chr2	25417992	25417993	chr2:25417993:G:A	rs140140178	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	25675815	25675816	chr2:25675816:A:G	rs60619459	A	G	A	Sox1.mouse_HMG_3	6	1	+	7.780849419000196	7.304333479344974	TCAGTGACATTGA
chr2	25808183	25808184	chr2:25808184:T:C	rs140520239	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	25850707	25850708	chr2:25850708:G:A	rs13421137	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	25928039	25928040	chr2:25928040:G:C	rs76826407	G	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	26067794	26067795	chr2:26067795:A:T	rs75106048	A	T	A	Sox1.mouse_HMG_3	9	1	-	7.7824992559161625	0.8955897481156552	TCACAGACATTGA
chr2	26268492	26268493	chr2:26268493:T:G	rs6754697	T	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	26268523	26268524	chr2:26268524:A:G	rs10445947	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	26528556	26528557	chr2:26528557:C:T	rs7583853	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	26540277	26540278	chr2:26540278:G:A	rs11690336	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.7918239202432105	0.6819834892573127	ACCATTTCATTGA
chr2	26568585	26568586	chr2:26568586:A:C	rs939815	A	C	A	Sox1.mouse_HMG_3	3	1	+	10.47258441890598	8.308419889709556	TCAATTCCATTCA
chr2	26942835	26942836	chr2:26942836:G:A	rs370057133	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	27187866	27187867	chr2:27187867:G:A	rs1659682	G	A	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	27871936	27871937	chr2:27871937:G:A	rs6705520	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	27958051	27958052	chr2:27958052:C:G	rs72812510	C	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	28134683	28134684	chr2:28134684:G:A	rs62140459	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	28150950	28150951	chr2:28150951:A:T	rs77560898	A	T	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	28287479	28287480	chr2:28287480:A:G	rs10495763	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.0384433247062095	-1.8616526969084375	TAACTGGCATTGA
chr2	28287580	28287581	chr2:28287581:A:G	rs144821775	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	28353166	28353167	chr2:28353167:C:T	rs538814543	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	28427638	28427639	chr2:28427639:G:A	rs6731639	G	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	28557378	28557379	chr2:28557379:A:G	rs114868246	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.9944454356594665	-1.9143093436557537	TTACTGCCATTGT
chr2	28623694	28623695	chr2:28623695:A:G	rs7604903	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	28623700	28623701	chr2:28623701:A:G	rs6547863	A	G	G	Sox1.mouse_HMG_3	2	1	+	6.248445694038804	-0.6603090852764157	ACACTTTCATTGG
chr2	28639206	28639207	chr2:28639207:G:A	rs11677442	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	28898220	28898221	chr2:28898221:A:G	rs73920395	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.8881032460207	-1.011992775593947	TTAATTGCAGTGA
chr2	29129813	29129814	chr2:29129814:C:T	rs1563049	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	29269932	29269933	chr2:29269933:G:A	rs568987993	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	29336932	29336933	chr2:29336933:G:A	rs35506497	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	29414821	29414822	chr2:29414822:G:A	rs76521269	G	A	G	Sox1.mouse_HMG_3	3	1	-	6.6017309849121055	1.9648683521915236	TCACAAACATTGT
chr2	29477216	29477217	chr2:29477217:A:G	rs4467230	A	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	29586994	29586995	chr2:29586995:G:A	rs11686243	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	29619547	29619548	chr2:29619548:G:A	rs10865513	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	29627906	29627907	chr2:29627907:G:A	rs17729718	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	29651848	29651849	chr2:29651849:A:G	rs2339538	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	30153478	30153479	chr2:30153479:A:T	rs13017699	A	T	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	30220368	30220369	chr2:30220369:A:G	rs10209384	A	G	G	Sox1.mouse_HMG_3	8	1	+	5.361668538285041	-1.5470862410301789	TCACTGACAGTGG
chr2	30259232	30259233	chr2:30259233:G:A	rs906864	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	30362852	30362853	chr2:30362853:A:G	rs75395710	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	30380932	30380933	chr2:30380933:C:T	rs6707509	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	30470123	30470124	chr2:30470124:G:A	rs829566	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	30684324	30684325	chr2:30684325:C:T	rs78361702	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	30744720	30744721	chr2:30744721:T:C	rs72783020	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	31171353	31171354	chr2:31171354:G:C	rs9308916	G	C	G	Sox1.mouse_HMG_3	3	1	-	7.05655318931869	2.419690556598108	ACACTAACAGTGA
chr2	31219751	31219752	chr2:31219752:A:G	rs76084130	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr2	31786145	31786146	chr2:31786146:G:A	rs77343015	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	32235816	32235817	chr2:32235817:C:G	rs212715	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	32356061	32356062	chr2:32356062:G:A	rs947016612	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	32750954	32750955	chr2:32750955:C:T	rs971511	C	T	C	Sox1.mouse_HMG_3	1	1	+	6.88281472330773	1.9245424921941043	TCAAAGTCATTGC
chr2	32796212	32796213	chr2:32796213:A:G	rs3906940	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	32861818	32861819	chr2:32861819:T:C	rs76473378	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.2225183854491615	-2.578508776467844	TCAATCACAGTGG
chr2	32927010	32927011	chr2:32927011:T:C	rs76617644	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.056706803386218	0.16979729558571077	TCAAAGGCATTGT
chr2	33242890	33242891	chr2:33242891:A:C	rs80086591	A	C	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	33242912	33242913	chr2:33242913:A:G	rs182831851	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.725308133998068	0.8383986261975604	TCAGTTTCATTGA
chr2	33251064	33251065	chr2:33251065:A:G	rs78270585	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	33312235	33312236	chr2:33312236:A:T	rs1277992150	A	T	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	33511288	33511289	chr2:33511289:T:G	rs78696285	T	G	T	Sox1.mouse_HMG_3	10	1	+	6.086039968268302	-0.8140560533463455	AAAATAACATTGA
chr2	33559733	33559734	chr2:33559734:G:A	rs12478742	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr2	33607234	33607235	chr2:33607235:T:C	rs13387494	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	33631862	33631863	chr2:33631863:T:C	rs77739585	T	C	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	33953607	33953608	chr2:33953608:G:C	rs7607204	G	C	G	Sox1.mouse_HMG_3	11	1	+	6.4494589454219575	1.8826302533023944	TCAAGACCATTGT
chr2	34210436	34210437	chr2:34210437:C:T	rs150404586	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	34353638	34353639	chr2:34353639:A:G	rs10166784	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	34447853	34447854	chr2:34447854:G:T	rs10495822	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	34667233	34667234	chr2:34667234:T:G	rs4670388	T	G	T	Sox1.mouse_HMG_3	5	1	+	5.768770632515716	5.259680759530836	TCAATTACCTTGT
chr2	34667249	34667250	chr2:34667250:A:C	rs1527597	A	C	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	35416465	35416466	chr2:35416466:T:C	rs13429480	T	C	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	35468441	35468442	chr2:35468442:C:G	rs13388298	C	G	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	35501313	35501314	chr2:35501314:G:A	rs11695142	G	A	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	35507586	35507587	chr2:35507587:A:G	rs4567910	A	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	35788785	35788786	chr2:35788786:T:C	rs7597892	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	35788808	35788809	chr2:35788809:T:A	rs7597973	T	A	A	Sox1.mouse_HMG_3	5	1	-	6.19884415700035	5.475261258918142	TCACTATCACTGA
chr2	35938764	35938765	chr2:35938765:G:A	rs2968625	G	A	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr2	36137875	36137876	chr2:36137876:T:C	rs305178	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.497276084302383	-1.3896334234981256	TCACTGATATTGG
chr2	36352848	36352849	chr2:36352849:G:C	rs13389698	G	C	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	36588883	36588884	chr2:36588884:T:C	rs848611	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	36707743	36707744	chr2:36707744:G:A	rs10182004	G	A	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	36965351	36965352	chr2:36965352:T:C	rs3770774	T	C	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	37349708	37349709	chr2:37349709:A:G	rs10196818	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	37377625	37377626	chr2:37377626:G:A	rs4233922	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	37640350	37640351	chr2:37640351:A:G	rs1468664	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	37718911	37718912	chr2:37718912:A:G	rs4670768	A	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	37740439	37740440	chr2:37740440:A:G	rs140835244	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.273772861517994	-0.6131366462825134	TCACCAGCATTGA
chr2	37832629	37832630	chr2:37832630:C:A	rs749795407	C	A	C	Sox1.mouse_HMG_3	6	1	+	4.276635658524961	4.328189001401499	TCACTACCCTTGT
chr2	37918899	37918900	chr2:37918900:A:G	rs75921425	A	G	A	Sox1.mouse_HMG_3	8	1	+	8.45112390452856	1.5423691252133385	TCAATAGCACTGA
chr2	38217985	38217986	chr2:38217986:A:C	rs12622754	A	C	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr2	38265444	38265445	chr2:38265445:C:T	rs1972974	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	38295500	38295501	chr2:38295501:G:T	rs12712582	G	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	38497787	38497788	chr2:38497788:G:A	rs143756552	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	38729804	38729805	chr2:38729805:A:G	rs2272445	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	39124022	39124023	chr2:39124023:G:A	rs570362852	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	39216498	39216499	chr2:39216499:G:A	rs56844025	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	39593906	39593907	chr2:39593907:T:C	rs537883667	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.725876047339751	1.0906632515351364	TCAAGTCCATTGT
chr2	39672294	39672295	chr2:39672295:A:G	rs917964	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	39676322	39676323	chr2:39676323:T:C	rs2716687	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.2756040712098535	-2.6331507081053673	CCAAAACCATTGA
chr2	39736526	39736527	chr2:39736527:A:G	rs8265	A	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	39772665	39772666	chr2:39772666:T:A	rs1861258	T	A	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	40228145	40228146	chr2:40228146:A:G	rs140467253	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.661203595901313	-2.2388924257133334	TCCATAGCAGTGA
chr2	40240833	40240834	chr2:40240834:T:C	rs56410612	T	C	T	Sox1.mouse_HMG_3	3	1	+	5.230078172305809	9.86694080502639	TCATTGCCATTGC
chr2	40245065	40245066	chr2:40245066:T:C	rs961784104	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.170530486483685	1.3695033245666814	TCAATTATATTGG
chr2	40251670	40251671	chr2:40251671:T:G	rs55747433	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	40321255	40321256	chr2:40321256:G:T	rs759387	G	T	G	Sox1.mouse_HMG_3	11	1	-	5.199163261608028	5.656151522741693	ACAATTACATTCC
chr2	40455386	40455387	chr2:40455387:T:A	rs12998011	T	A	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	40515342	40515343	chr2:40515343:C:G	rs12479405	C	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	40553145	40553146	chr2:40553146:C:G	rs34875537	C	G	G	Sox1.mouse_HMG_3	9	1	+	5.588118024984043	8.706952495672015	TCAATACCACTGG
chr2	40680844	40680845	chr2:40680845:G:A	rs17026478	G	A	G	Sox1.mouse_HMG_3	8	1	+	5.566272753469329	12.47502753278455	TCAATACCGTTGG
chr2	40759578	40759579	chr2:40759579:G:A	rs58596943	G	A	A	Sox1.mouse_HMG_3	7	1	-	4.753059556507208	1.120592065412013	TCAATACCATAAA
chr2	41329552	41329553	chr2:41329553:T:C	rs13419110	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	41614995	41614996	chr2:41614996:A:G	rs2163049	A	G	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	41627271	41627272	chr2:41627272:A:C	rs1920491	A	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	41627281	41627282	chr2:41627282:C:T	rs1920490	C	T	T	Sox1.mouse_HMG_3	1	1	+	5.414279189667864	0.45600695855423745	ACACATCCATTGA
chr2	41742849	41742850	chr2:41742850:T:G	rs543142362	T	G	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	41899525	41899526	chr2:41899526:T:C	rs116330645	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.426382756791613	-2.3746444051253923	CCAATCACATTGA
chr2	41929065	41929066	chr2:41929066:G:C	rs10495892	G	C	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	41966590	41966591	chr2:41966591:T:C	chr2:41966591:T:C	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	41971105	41971106	chr2:41971106:G:A	rs11124856	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	42254711	42254712	chr2:42254712:G:A	rs11690731	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	42366709	42366710	chr2:42366710:A:C	rs80210883	A	C	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr2	42886216	42886217	chr2:42886217:C:T	rs4350801	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	42985254	42985255	chr2:42985255:T:C	rs6544622	T	C	C	Sox1.mouse_HMG_3	12	1	+	6.5010122882984955	6.415235426551794	TCAACAACATTGT
chr2	43026207	43026208	chr2:43026208:C:T	rs2121356	C	T	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	43032024	43032025	chr2:43032025:C:T	rs10175942	C	T	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	43081865	43081866	chr2:43081866:G:A	rs774476863	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	43306074	43306075	chr2:43306075:G:A	rs6719534	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	43347875	43347876	chr2:43347876:A:G	rs13382334	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.1739038977841325	-1.7130056100163749	TCCATGACATTGC
chr2	43590106	43590107	chr2:43590107:A:G	rs78925283	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	43717637	43717638	chr2:43717638:G:C	rs73923858	G	C	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	43717645	43717646	chr2:43717646:T:A	rs13416669	T	A	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	43727652	43727653	chr2:43727653:C:T	rs10199649	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	43875095	43875096	chr2:43875096:T:C	rs4148220	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.842877235787196	-1.0658775435280257	TCACTGCCATTAT
chr2	43896618	43896619	chr2:43896619:G:A	rs76850904	G	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	43896619	43896620	chr2:43896620:G:A	rs3795859	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	43968669	43968670	chr2:43968670:A:C	rs13009669	A	C	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	43974119	43974120	chr2:43974120:T:C	rs7593842	T	C	t	Sox1.mouse_HMG_3	9	1	+	5.825346269737651	-1.0615632380628564	CCAATTACATTGT
chr2	44061876	44061877	chr2:44061877:T:C	rs73924143	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.904391520282857	-2.004363259032363	ACAATTGCATTTA
chr2	44100514	44100515	chr2:44100515:G:A	rs116439050	G	A	G	Sox1.mouse_HMG_3	8	1	+	5.053194938358859	11.961949717674079	TCAATATCGTTGG
chr2	44268417	44268418	chr2:44268418:T:C	rs1013376003	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	44604813	44604814	chr2:44604814:T:C	rs17390029	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr2	44704380	44704381	chr2:44704381:C:T	rs343989	C	T	T	Sox1.mouse_HMG_3	9	1	-	4.573088377569528	1.4542539068815536	TCAATATCCGTGA
chr2	44912937	44912938	chr2:44912938:T:C	rs749148694	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	44968839	44968840	chr2:44968840:G:A	rs163505	G	A	A	Sox1.mouse_HMG_3	9	1	+	3.946279455519679	0.8274449848317043	TCAAGTGCAGTGA
chr2	45042682	45042683	chr2:45042683:A:G	rs6544780	A	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	45056819	45056820	chr2:45056820:G:A	rs7583949	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	45543592	45543593	chr2:45543593:G:A	rs3770292	G	A	A	Sox1.mouse_HMG_3	9	1	+	8.344819216731393	5.2259847460434194	TCAATTTCAGTGT
chr2	45744242	45744243	chr2:45744243:A:G	rs146130377	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	45804402	45804403	chr2:45804403:C:A	rs62127182	C	A	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	45820666	45820667	chr2:45820667:G:A	rs34274023	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	45849769	45849770	chr2:45849770:C:T	rs10166595	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	45895735	45895736	chr2:45895736:A:C	rs72801099	A	C	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	45945971	45945972	chr2:45945972:A:T	rs73926118	A	T	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	46001874	46001875	chr2:46001875:A:T	chr2:46001875:A:T	A	T	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	46016173	46016174	chr2:46016174:A:G	rs3738898	A	G	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	46016176	46016177	chr2:46016177:C:A	rs77652094	C	A	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	46098782	46098783	chr2:46098783:T:C	rs575758089	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	46131400	46131401	chr2:46131401:A:G	rs564993415	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	46198268	46198269	chr2:46198269:A:C	chr2:46198269:A:C	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr2	46223588	46223589	chr2:46223589:C:T	rs11125057	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	46248657	46248658	chr2:46248658:C:T	rs11681778	C	T	T	Sox1.mouse_HMG_3	5	1	-	4.617931497497697	5.850604268564785	TCAACGTCATTGC
chr2	46249885	46249886	chr2:46249886:A:G	rs78446731	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.18723396893226	1.3003244611317524	GCAATTCCATTGA
chr2	46284799	46284800	chr2:46284800:C:T	rs1000531	C	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	46284836	46284837	chr2:46284837:T:C	rs1000532	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	46296781	46296782	chr2:46296782:T:C	rs13391305	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.118362612782004	-1.781733408832643	TCAATTTCCTTGC
chr2	46296791	46296792	chr2:46296792:C:T	rs76791741	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	46296794	46296795	chr2:46296795:C:T	rs13428739	C	T	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	46303827	46303828	chr2:46303828:A:G	rs79993302	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	46309969	46309970	chr2:46309970:C:A	rs11886469	C	A	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	46363194	46363195	chr2:46363195:C:G	rs1530631	C	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	46378550	46378551	chr2:46378551:G:A	rs142434864	G	A	G	Sox1.mouse_HMG_3	7	1	-	7.973366515088131	4.340899023992938	TCAATTCCATTCC
chr2	46411423	46411424	chr2:46411424:A:G	rs1868090	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	46486181	46486182	chr2:46486182:T:C	rs4953389	T	C	C	Sox1.mouse_HMG_3	4	1	+	4.374829413915075	-2.5252666076995722	CCAATCCCATTGA
chr2	46496079	46496080	chr2:46496080:C:A	rs7590802	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	46535508	46535509	chr2:46535509:G:A	rs74331478	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	46559351	46559352	chr2:46559352:G:A	rs12712976	G	A	A	Sox1.mouse_HMG_3	1	1	-	6.150156637458316	1.1918844063446894	ACACTATCATTAA
chr2	46615270	46615271	chr2:46615271:A:G	rs2242033	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	46618709	46618710	chr2:46618710:A:G	rs2122715	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	46798818	46798819	chr2:46798819:C:A	rs17772991	C	A	c	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	46798821	46798822	chr2:46798822:T:C	rs79114799	T	C	t	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	46843687	46843688	chr2:46843688:A:G	rs1579862	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	46917063	46917064	chr2:46917064:C:G	rs13388612	C	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	46962502	46962503	chr2:46962503:T:C	rs12712981	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	47008880	47008881	chr2:47008881:T:G	chr2:47008881:T:G	T	G	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	47134839	47134840	chr2:47134840:T:C	rs145474165	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	47300234	47300235	chr2:47300235:A:G	rs2036161	A	G	a	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	47581714	47581715	chr2:47581715:T:C	rs115477902	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	47857750	47857751	chr2:47857751:G:A	rs77268227	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	48116809	48116810	chr2:48116810:G:A	rs6545021	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	48257327	48257328	chr2:48257328:C:T	rs12713007	C	T	C	Sox1.mouse_HMG_3	3	1	+	4.298480930039673	-0.33838170268090795	TCACTACCACTGT
chr2	48444626	48444627	chr2:48444627:A:G	rs55757090	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	48559900	48559901	chr2:48559901:A:G	rs11681868	A	G	A	Sox1.mouse_HMG_3	0	1	-	3.402108224272905	-3.45007091782038	TCTCTACCATTGG
chr2	48754506	48754507	chr2:48754507:A:G	rs4073656	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	48854938	48854939	chr2:48854939:C:T	rs4643585	C	T	T	Sox1.mouse_HMG_3	11	1	-	6.970929941639515	2.8610895106536174	TCAAAGGCATTGC
chr2	48885992	48885993	chr2:48885993:A:G	rs116040692	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	49110816	49110817	chr2:49110817:C:T	rs2349715	C	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	49110836	49110837	chr2:49110837:C:T	rs7597101	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	49433196	49433197	chr2:49433197:G:A	rs1569110	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	49661537	49661538	chr2:49661538:G:A	rs6545125	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	49737210	49737211	chr2:49737211:G:A	rs17489439	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	50023308	50023309	chr2:50023309:T:C	rs4971635	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	50086698	50086699	chr2:50086699:G:A	rs4641977	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	50117843	50117844	chr2:50117844:A:G	rs11901625	A	G	A	Sox1.mouse_HMG_3	5	1	+	3.7903485817074345	2.557675810640346	TCACTAGCATTTC
chr2	50126700	50126701	chr2:50126701:C:T	rs13034607	C	T	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	50134810	50134811	chr2:50134811:T:C	rs11125289	T	C	T	Sox1.mouse_HMG_3	11	1	-	5.781282069124559	9.891122500110457	TCAATTTCATCAA
chr2	50273222	50273223	chr2:50273223:A:G	rs9309180	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	50398378	50398379	chr2:50398379:T:A	rs1969351	T	A	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr2	50402997	50402998	chr2:50402998:T:C	rs80327893	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	50606998	50606999	chr2:50606999:G:A	rs12477674	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	51031556	51031557	chr2:51031557:C:A	rs2287233	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	51220606	51220607	chr2:51220607:C:T	rs6733408	C	T	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	51675865	51675866	chr2:51675866:C:G	rs9309217	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	52365917	52365918	chr2:52365918:C:G	rs4971810	C	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	52440641	52440642	chr2:52440642:G:A	rs72800288	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	52440642	52440643	chr2:52440643:C:T	rs72800290	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	52681488	52681489	chr2:52681489:T:C	rs350792	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	52704993	52704994	chr2:52704994:T:C	rs6738153	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.782726274917044	1.9816991130000363	TCAATACCATTCT
chr2	52867649	52867650	chr2:52867650:T:C	rs10173886	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.349822172382636	1.5487950104656278	TCAATATCATAGA
chr2	52898029	52898030	chr2:52898030:C:T	rs543654449	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.4141366374743285	-0.5441355936392973	TCAATTACTGTGA
chr2	53067172	53067173	chr2:53067173:T:C	rs17189154	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	53243695	53243696	chr2:53243696:T:C	rs1364681	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	53248119	53248120	chr2:53248120:T:C	rs13399090	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.368585286553667	-2.5315107350609805	TAAATTCCAGTGA
chr2	53498628	53498629	chr2:53498629:T:C	rs10193431	T	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	53504357	53504358	chr2:53504358:G:A	rs7586411	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	53788265	53788266	chr2:53788266:C:T	rs2692536	C	T	T	Sox1.mouse_HMG_3	1	1	+	4.7918239202432105	-0.16644831087041623	ACCATTTCATTGA
chr2	53820294	53820295	chr2:53820295:G:A	rs2542574	G	A	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	53907866	53907867	chr2:53907867:T:A	rs805317	T	A	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	54093637	54093638	chr2:54093638:G:C	rs13418839	G	C	G	Sox1.mouse_HMG_3	7	1	-	7.878204920812509	0.9984685303478975	TTAATATCATTGT
chr2	54093661	54093662	chr2:54093662:C:T	rs13418658	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	54275123	54275124	chr2:54275124:T:A	rs77999713	T	A	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	54528740	54528741	chr2:54528741:A:G	rs4319969	A	G	A	Sox1.mouse_HMG_3	10	1	-	3.7877414715142863	-0.8474713242903278	TCACTAGCAATGC
chr2	54590315	54590316	chr2:54590316:A:T	rs10206143	A	T	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	54635214	54635215	chr2:54635215:C:G	rs58419243	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	54794011	54794012	chr2:54794012:C:T	rs72917541	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	54801369	54801370	chr2:54801370:C:T	rs112235365	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	54905622	54905623	chr2:54905623:A:G	rs6545456	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	54953300	54953301	chr2:54953301:A:G	rs17046510	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	55119998	55119999	chr2:55119999:G:A	rs72795498	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	55618925	55618926	chr2:55618926:A:G	rs571745368	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	55618929	55618930	chr2:55618930:A:G	rs1404460700	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	55761812	55761813	chr2:55761813:A:G	rs11887339	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.024049137346314	-0.8628603704541944	TAACTTACATTGA
chr2	55992527	55992528	chr2:55992528:A:G	rs956251483	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	56288964	56288965	chr2:56288965:A:C	rs80122379	A	C	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	56514884	56514885	chr2:56514885:T:C	rs7606299	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.185657643186209	-0.723097136129011	TCACTATCATAGA
chr2	56821604	56821605	chr2:56821605:A:G	rs4561703	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	57171865	57171866	chr2:57171866:T:C	rs984663	T	C	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	57237416	57237417	chr2:57237417:G:A	rs75345425	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	57386159	57386160	chr2:57386160:G:C	rs1119578	G	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	57598011	57598012	chr2:57598012:T:A	rs7577676	T	A	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	57764976	57764977	chr2:57764977:G:A	rs13032423	G	A	g	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	58006467	58006468	chr2:58006468:G:A	rs73942275	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	59077751	59077752	chr2:59077752:G:A	rs13011586	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	59236697	59236698	chr2:59236698:A:G	rs1168305222	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	59806348	59806349	chr2:59806349:C:T	rs7565849	C	T	T	Sox1.mouse_HMG_3	9	1	+	8.363008686196775	15.249918193997281	TCAATATCACTGA
chr2	59909391	59909392	chr2:59909392:T:C	rs73932454	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	59997193	59997194	chr2:59997194:A:T	rs6731782	A	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	59998737	59998738	chr2:59998738:C:T	rs6545772	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	60045475	60045476	chr2:60045476:T:C	rs13021024	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	60125840	60125841	chr2:60125841:C:T	rs115277064	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	60320431	60320432	chr2:60320432:A:G	rs11125833	A	G	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	60441800	60441801	chr2:60441801:A:G	rs75617493	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	60495105	60495106	chr2:60495106:A:G	rs6738440	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.4259813940913535	-2.4827733852238665	TCATTCCCATTGA
chr2	60992879	60992880	chr2:60992880:C:T	rs10182774	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	61117759	61117760	chr2:61117760:T:C	rs77001332	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.4775347369678915	-2.4093747708326156	TCATTCACATTGA
chr2	61671761	61671762	chr2:61671762:A:G	chr2:61671762:A:G	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr2	61715710	61715711	chr2:61715711:C:A	rs2421436	C	A	C	Sox1.mouse_HMG_3	1	1	+	9.129743575397574	2.2269907880382305	TCACTGACATTGG
chr2	61764429	61764430	chr2:61764430:C:T	rs117196790	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	61764468	61764469	chr2:61764469:G:A	rs1186869	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr2	62182926	62182927	chr2:62182927:A:G	rs58155782	A	G	A	Sox1.mouse_HMG_3	4	1	-	6.244983875042044	-0.6551121465726053	ACAATAGCAGTGC
chr2	62294969	62294970	chr2:62294970:G:A	rs4558575	G	A	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr2	62475705	62475706	chr2:62475706:G:A	rs11675481	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	62475725	62475726	chr2:62475726:C:T	rs72883579	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	62569155	62569156	chr2:62569156:T:C	rs9973891	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	62631321	62631322	chr2:62631322:C:T	rs35561669	C	T	c	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	62705064	62705065	chr2:62705065:C:A	chr2:62705065:C:A	C	A	T	Sox1.mouse_HMG_3	9	1	+	4.340099048207852	4.340099048207852	TCAATCCCACTGA
chr2	62705066	62705067	chr2:62705067:G:A	rs147051453	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.340099048207852	0.23025861722195362	TCAATCCCACTGA
chr2	63661227	63661228	chr2:63661228:C:T	rs768401887	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	64203278	64203279	chr2:64203279:T:C	rs17676818	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.296124170781237	-1.612630608533983	TCACTTTCATTCC
chr2	64258330	64258331	chr2:64258331:T:G	rs2251764	T	G	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	64266011	64266012	chr2:64266012:A:G	rs869739	A	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	64405434	64405435	chr2:64405435:A:G	rs72812038	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	64515489	64515490	chr2:64515490:T:C	rs78136426	T	C	t	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	64515493	64515494	chr2:64515494:A:G	rs183575940	A	G	a	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	64594318	64594319	chr2:64594319:A:G	rs11688177	A	G	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	64898643	64898644	chr2:64898644:T:C	rs6707916	T	C	C	Sox1.mouse_HMG_3	9	1	+	3.9082486989682113	-2.978660808832297	GCACTAGCATTGT
chr2	64915385	64915386	chr2:64915386:T:A	rs149257374	T	A	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	64954118	64954119	chr2:64954119:A:C	rs6725785	A	C	A	Sox1.mouse_HMG_3	2	1	+	8.308419889709556	1.3996651103943365	TCACTTCCATTCA
chr2	65135034	65135035	chr2:65135035:T:C	rs4671118	T	C	C	Sox1.mouse_HMG_3	8	1	-	9.568063064801446	2.659308285486227	TTAATTTCATTGA
chr2	65146234	65146235	chr2:65146235:T:A	rs114498195	T	A	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	65226786	65226787	chr2:65226787:T:C	rs34813149	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	65321372	65321373	chr2:65321373:T:C	rs13409229	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	65565911	65565912	chr2:65565912:A:G	rs73935237	A	G	A	Sox1.mouse_HMG_3	12	1	+	5.041100090450907	1.7531316141277045	TCACTGGCATAGA
chr2	65624001	65624002	chr2:65624002:C:T	rs112832799	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	65862091	65862092	chr2:65862092:C:G	rs13006260	C	G	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	65911656	65911657	chr2:65911657:A:G	rs719832	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	65923710	65923711	chr2:65923711:C:T	rs17031141	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	66364824	66364825	chr2:66364825:G:A	rs75182730	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	66430669	66430670	chr2:66430670:C:T	rs10200708	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	66459463	66459464	chr2:66459464:T:C	rs6727704	T	C	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	66522477	66522478	chr2:66522478:A:G	rs4430933	A	G	A	Sox1.mouse_HMG_3	5	1	-	8.042312616026322	4.229908061009137	TCAAATACATTGT
chr2	66542021	66542022	chr2:66542022:C:T	rs17625742	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	66580977	66580978	chr2:66580978:C:A	rs185383898	C	A	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	66675871	66675872	chr2:66675872:T:C	rs6546254	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	66854374	66854375	chr2:66854375:G:A	rs12713575	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	67251816	67251817	chr2:67251817:C:T	rs4671789	C	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	67641588	67641589	chr2:67641589:A:G	rs1549783	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.799988027688915	-1.0010391342280909	TTAATTTCAGTGA
chr2	67691335	67691336	chr2:67691336:T:G	rs13430868	T	G	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	67895096	67895097	chr2:67895097:C:G	rs6546339	C	G	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	68137345	68137346	chr2:68137346:T:C	rs13009282	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	68156768	68156769	chr2:68156769:C:T	rs79883557	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	68230440	68230441	chr2:68230441:C:T	rs12468533	C	T	T	Sox1.mouse_HMG_3	7	1	+	4.600205668218043	0.9677381771228517	ACAATCTCATTGG
chr2	68441326	68441327	chr2:68441327:C:T	rs10196560	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	68561381	68561382	chr2:68561382:A:C	rs11893609	A	C	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	68591409	68591410	chr2:68591410:G:T	rs75150717	G	T	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	68733678	68733679	chr2:68733679:C:T	rs72828875	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	68744940	68744941	chr2:68744941:T:C	rs4854448	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr2	68784690	68784691	chr2:68784691:G:A	rs112552084	G	A	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	68789509	68789510	chr2:68789510:A:G	rs17602799	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.711249654055418	-1.1975051252598017	ACATTAGCATTGA
chr2	68973860	68973861	chr2:68973861:C:T	rs1019087041	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	69128813	69128814	chr2:69128814:G:A	rs75430990	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	69176749	69176750	chr2:69176750:G:T	rs34081493	G	T	G	Sox1.mouse_HMG_3	5	1	+	7.6975741833098414	8.206664056294722	TCAATGACATTTA
chr2	69584857	69584858	chr2:69584858:A:G	rs6728247	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	69644508	69644509	chr2:69644509:G:T	rs76498379	G	T	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	69949410	69949411	chr2:69949411:C:T	rs10165166	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	69976442	69976443	chr2:69976443:C:T	rs78740873	C	T	C	Sox1.mouse_HMG_3	12	1	+	3.4759346563966242	3.5617115181433268	TCACTTCCATAGC
chr2	69999007	69999008	chr2:69999008:G:A	rs4853243	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	70247364	70247365	chr2:70247365:T:C	rs17615583	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	70726612	70726613	chr2:70726613:C:T	rs1030044	C	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	70735622	70735623	chr2:70735623:T:C	rs2160401	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	70833601	70833602	chr2:70833602:A:C	rs72836218	A	C	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	70871333	70871334	chr2:70871334:A:T	rs11679282	A	T	A	Sox1.mouse_HMG_3	8	1	+	6.035449990009129	-0.873304789306091	TCATTATCATTGT
chr2	71036365	71036366	chr2:71036366:A:G	rs9679679	A	G	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	71119201	71119202	chr2:71119202:A:G	rs6546677	A	G	.	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	71261813	71261814	chr2:71261814:G:T	rs2609505	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	71348128	71348129	chr2:71348129:A:G	rs3771376	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	71464473	71464474	chr2:71464474:C:T	rs78130680	C	T	T	Sox1.mouse_HMG_3	9	1	-	4.3712420522983635	1.2524075816103892	TCAACTCCAGTGA
chr2	71516853	71516854	chr2:71516854:C:T	rs79470017	C	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	71576049	71576050	chr2:71576050:C:T	rs745917	C	T	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	71711057	71711058	chr2:71711058:A:G	rs1896496	A	G	G	Sox1.mouse_HMG_3	4	1	-	5.625367308171917	-1.2747287134427308	ACAATAGCACTGA
chr2	71893028	71893029	chr2:71893029:A:G	rs17007566	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	72099522	72099523	chr2:72099523:A:C	rs10198511	A	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	72781605	72781606	chr2:72781606:T:C	rs11900751	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.885941130530872	-2.000968377269636	AAAATTGCATTGA
chr2	72988899	72988900	chr2:72988900:G:A	rs182494809	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	73384973	73384974	chr2:73384974:C:T	rs12465867	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	73882893	73882894	chr2:73882894:A:G	rs10519327	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	73911010	73911011	chr2:73911011:C:T	rs2463120	C	T	C	Sox1.mouse_HMG_3	9	1	+	6.462645459236098	13.349554967036607	TCAATACCACTGT
chr2	73936803	73936804	chr2:73936804:G:C	rs831528	G	C	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	74389531	74389532	chr2:74389532:A:G	rs6740481	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	74936422	74936423	chr2:74936423:A:G	rs965078	A	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	75134737	75134738	chr2:75134738:T:C	rs3771827	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	75429167	75429168	chr2:75429168:C:A	rs146491802	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	75456646	75456647	chr2:75456647:C:T	rs115284285	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	75456662	75456663	chr2:75456663:A:C	rs7576567	A	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	75475691	75475692	chr2:75475692:C:T	rs115058769	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	75480798	75480799	chr2:75480799:A:G	rs6739249	A	G	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	75948005	75948006	chr2:75948006:G:A	rs17011958	G	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	76210447	76210448	chr2:76210448:A:T	rs10170586	A	T	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	76598277	76598278	chr2:76598278:C:T	rs1850913	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	76599781	76599782	chr2:76599782:C:A	rs72810890	C	A	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	76641074	76641075	chr2:76641075:G:A	rs185006672	G	A	G	Sox1.mouse_HMG_3	11	1	+	6.072413228164637	1.962572797178738	GCAATAGCATTGT
chr2	76789222	76789223	chr2:76789223:T:G	rs12988164	T	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	76985744	76985745	chr2:76985745:G:A	rs116226981	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	77779877	77779878	chr2:77779878:C:T	rs2861213	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	78645305	78645306	chr2:78645306:G:A	rs1239103	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	78852731	78852732	chr2:78852732:G:A	rs75571536	G	A	G	Sox1.mouse_HMG_3	7	1	-	4.393812082979352	0.7613445918841593	TCAAGGACATTGG
chr2	78917219	78917220	chr2:78917220:T:A	rs143308140	T	A	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	78925795	78925796	chr2:78925796:G:A	rs2861680	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	79293200	79293201	chr2:79293201:C:T	rs1434170	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	79293223	79293224	chr2:79293224:G:A	rs72818623	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	79771690	79771691	chr2:79771691:G:A	rs72912717	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	79965225	79965226	chr2:79965226:G:A	rs2916490	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.391155317234654	0.2813148862487562	TGAATGACATTGG
chr2	79980366	79980367	chr2:79980367:T:C	rs57637264	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	80586970	80586971	chr2:80586971:C:T	rs12474308	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	80699278	80699279	chr2:80699279:C:A	rs62151187	C	A	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	81704885	81704886	chr2:81704886:A:G	rs17020675	A	G	A	Sox1.mouse_HMG_3	1	1	+	5.623828088301742	5.623828088301742	TAAATAACATTGG
chr2	82029017	82029018	chr2:82029018:T:C	rs111900587	T	C	T	Sox1.mouse_HMG_3	0	1	-	6.150156637458316	2.1237340917216745	ACACTATCATTAA
chr2	82085006	82085007	chr2:82085007:C:T	rs11126855	C	T	T	Sox1.mouse_HMG_3	7	1	+	8.41674044467519	4.784272953579995	TCAATAACATTAG
chr2	82280834	82280835	chr2:82280835:C:T	rs12993756	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	82685695	82685696	chr2:82685696:C:T	rs113487444	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	82811824	82811825	chr2:82811825:A:C	rs185808058	A	C	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	82880084	82880085	chr2:82880085:A:G	rs12470166	A	G	G	Sox1.mouse_HMG_3	2	1	+	6.10782228719523	-0.8009324921199901	TCACTAGCATTCC
chr2	83007308	83007309	chr2:83007309:A:C	rs62146758	A	C	A	Sox1.mouse_HMG_3	12	1	+	14.526335295915072	12.027117392097223	TCAATTTCATTGA
chr2	83233090	83233091	chr2:83233091:C:T	rs62150496	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	83580230	83580231	chr2:83580231:A:T	rs17023713	A	T	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	83826659	83826660	chr2:83826660:A:C	rs4832330	A	C	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	83826663	83826664	chr2:83826664:A:G	rs142633272	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	84285972	84285973	chr2:84285973:A:C	chr2:84285973:A:C	A	C	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	84716835	84716836	chr2:84716836:A:C	rs116551204	A	C	A	Sox1.mouse_HMG_3	0	1	-	5.78527001125015	-1.0669091308431327	TCAATGCCATCAA
chr2	84828707	84828708	chr2:84828708:T:A	rs114984249	T	A	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	84830429	84830430	chr2:84830430:A:T	rs1192275	A	T	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	84840486	84840487	chr2:84840487:C:T	rs774416898	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	84899650	84899651	chr2:84899651:G:C	rs6752806	G	C	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	85111209	85111210	chr2:85111210:A:C	rs79402360	A	C	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	85193000	85193001	chr2:85193001:C:T	rs2568210	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	85515173	85515174	chr2:85515174:A:G	rs2886722	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.4609434493543105	-0.42596605844619684	TCAATTCAATTGG
chr2	85668580	85668581	chr2:85668581:C:T	rs3024791	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	85685185	85685186	chr2:85685186:G:C	rs10169148	G	C	G	Sox1.mouse_HMG_3	1	1	-	3.489121170210763	-3.4136316171485803	TCACTTCCACTGC
chr2	85693205	85693206	chr2:85693206:T:C	rs2886767	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	85700280	85700281	chr2:85700281:C:T	rs34702373	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	85731691	85731692	chr2:85731692:C:T	rs77910984	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	85850409	85850410	chr2:85850410:C:T	rs114993002	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr2	86217931	86217932	chr2:86217932:G:T	rs112990545	G	T	G	Sox1.mouse_HMG_3	3	1	-	12.362170766718648	14.526335295915072	TCACTTTCATTGA
chr2	87476707	87476708	chr2:87476708:A:G	rs72938975	A	G	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	87680946	87680947	chr2:87680947:G:A	rs146472401	G	A	.	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	88083756	88083757	chr2:88083757:C:T	rs7591823	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	88096654	88096655	chr2:88096655:T:C	rs2919881	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	88118158	88118159	chr2:88118159:C:T	rs80267210	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	88147744	88147745	chr2:88147745:T:G	rs80324973	T	G	T	Sox1.mouse_HMG_3	4	1	+	3.014761662933106	-3.885334358681541	CCACTGCCATTGC
chr2	88165956	88165957	chr2:88165957:A:C	rs4633926	A	C	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	88216242	88216243	chr2:88216243:T:C	rs6547762	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	88448870	88448871	chr2:88448871:A:T	rs4972212	A	T	T	Sox1.mouse_HMG_3	10	1	-	4.480226719904298	-2.419869301710349	ACACAGGCATTGA
chr2	88628527	88628528	chr2:88628528:A:T	rs78137175	A	T	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	88754531	88754532	chr2:88754532:G:C	rs17037534	G	C	g	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	88821843	88821844	chr2:88821844:G:A	rs28493576	G	A	N	Sox1.mouse_HMG_3	11	1	+	7.458933518895826	3.349093087909928	TCAATCCCAGTGA
chr2	88843378	88843379	chr2:88843379:A:G	rs2200334	A	G	a	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	89773712	89773713	chr2:89773713:C:T	rs1023130179	C	T	.	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	89783084	89783085	chr2:89783085:T:C	rs951405152	T	C	.	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	89797449	89797450	chr2:89797450:A:G	rs949996996	A	G	.	Sox1.mouse_HMG_3	2	1	+	4.867142237094981	-2.041612542220237	TCAATTCCATTTG
chr2	89797454	89797455	chr2:89797455:C:T	rs927375809	C	T	.	Sox1.mouse_HMG_3	7	1	+	4.867142237094981	1.2346747459997887	TCAATTCCATTTG
chr2	89803173	89803174	chr2:89803174:C:A	rs772351307	C	A	.	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	89828936	89828937	chr2:89828937:G:T	rs375636450	G	T	.	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	89828945	89828946	chr2:89828946:T:A	rs370314086	T	A	.	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	89828976	89828977	chr2:89828977:G:T	rs372056880	G	T	.	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	89829334	89829335	chr2:89829335:A:G	rs796591009	A	G	.	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	89833285	89833286	chr2:89833286:T:A	rs796790891	T	A	.	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	89833319	89833320	chr2:89833320:T:A	rs796405376	T	A	.	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	89836422	89836423	chr2:89836423:C:T	rs373713985	C	T	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	89836425	89836426	chr2:89836426:T:A	rs796887169	T	A	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	89836536	89836537	chr2:89836537:T:C	rs957686263	T	C	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr2	89840444	89840445	chr2:89840445:A:G	rs796676857	A	G	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	89849148	89849149	chr2:89849149:A:G	rs377010215	A	G	.	Sox1.mouse_HMG_3	8	1	+	8.190870432287435	1.2821156529722144	TCAATTACATGGA
chr2	90381580	90381581	chr2:90381581:T:A	rs13396470	T	A	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	90382578	90382579	chr2:90382579:A:C	rs6709827	A	C	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	90385074	90385075	chr2:90385075:C:G	rs144571089	C	G	.	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	90385110	90385111	chr2:90385111:T:C	rs62143613	T	C	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	90385259	90385260	chr2:90385260:T:C	rs796906837	T	C	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	90386083	90386084	chr2:90386084:C:A	rs78626035	C	A	.	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	90389893	90389894	chr2:90389894:T:A	rs7424330	T	A	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	90390154	90390155	chr2:90390155:C:A	rs59876081	C	A	.	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	90391095	90391096	chr2:90391096:T:C	rs62143307	T	C	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	90392428	90392429	chr2:90392429:C:A	rs7370785	C	A	.	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	90392513	90392514	chr2:90392514:T:G	rs79821416	T	G	.	Sox1.mouse_HMG_3	2	1	-	7.184615942582777	0.27586116326755894	TCAATTCCATTCG
chr2	90393695	90393696	chr2:90393696:C:T	rs138687204	C	T	.	Sox1.mouse_HMG_3	12	1	-	6.759653345804093	10.047621822127295	TCAATTGCATTCG
chr2	90397697	90397698	chr2:90397698:C:A	rs2601498	C	A	.	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	90397971	90397972	chr2:90397972:G:A	rs2923575	G	A	.	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	91409155	91409156	chr2:91409156:G:C	rs1369269363	G	C	.	Sox1.mouse_HMG_3	1	1	-	6.8401169278107865	-0.0626358595485561	TCAATTCTATTCA
chr2	91415535	91415536	chr2:91415536:G:A	rs983307997	G	A	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	93015237	93015238	chr2:93015238:A:G	rs1277146593	A	G	.	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	94272758	94272759	chr2:94272759:G:C	rs1375274659	G	C	.	Sox1.mouse_HMG_3	1	1	-	7.546869065084483	0.6441162777251395	TCAAAAATATTGA
chr2	94909177	94909178	chr2:94909178:G:A	rs115685643	G	A	g	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr2	95314591	95314592	chr2:95314592:A:G	rs889851	A	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	96023335	96023336	chr2:96023336:G:A	rs113262512	G	A	g	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	96266703	96266704	chr2:96266704:G:C	rs572184674	G	C	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	96760803	96760804	chr2:96760804:G:A	rs3806559	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr2	97803070	97803071	chr2:97803071:G:A	rs718159	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	97806836	97806837	chr2:97806837:G:A	rs59714792	G	A	G	Sox1.mouse_HMG_3	12	1	-	4.718650194111307	4.804427055858008	TCACAGTCATTGC
chr2	97934702	97934703	chr2:97934703:A:G	rs1071885	A	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	97994948	97994949	chr2:97994949:T:C	rs6736475	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.329354117061543	-1.5794006622536778	ACAATTCCATTTA
chr2	98253531	98253532	chr2:98253532:C:T	rs80285452	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	98268616	98268617	chr2:98268617:A:G	chr2:98268617:A:G	A	G	a	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	98360314	98360315	chr2:98360315:C:T	rs12475597	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	98360315	98360316	chr2:98360316:A:T	rs12463616	A	T	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	98654547	98654548	chr2:98654548:C:T	rs2309433	C	T	C	Sox1.mouse_HMG_3	6	1	+	4.820264244076661	4.30718642896619	ACAATGCCATTTA
chr2	98678539	98678540	chr2:98678540:C:A	rs17021875	C	A	C	Sox1.mouse_HMG_3	3	1	-	5.412629352751896	5.412629352751896	ACAGTTCCATTGA
chr2	98775731	98775732	chr2:98775732:G:A	rs112988914	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	99636572	99636573	chr2:99636573:T:C	rs769242269	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.365113835930794	-1.521795671869715	ACAATTACATAGA
chr2	100158582	100158583	chr2:100158583:T:C	rs4851256	T	C	t	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	100173444	100173445	chr2:100173445:T:C	rs7593261	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	100322870	100322871	chr2:100322871:G:A	rs12999151	G	A	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	100630682	100630683	chr2:100630683:T:C	rs10191620	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	100667085	100667086	chr2:100667086:T:C	rs4851359	T	C	C	Sox1.mouse_HMG_3	0	1	-	3.872978861940038	-0.15344368379660422	ACACTACCATAGA
chr2	100804100	100804101	chr2:100804101:C:T	rs7598317	C	T	T	Sox1.mouse_HMG_3	3	1	+	5.474706053621393	0.837843420900813	TCACTTCTAGTGA
chr2	100964309	100964310	chr2:100964310:T:C	rs62152898	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	101012535	101012536	chr2:101012536:T:G	rs1302	T	G	G	Sox1.mouse_HMG_3	5	1	-	7.417315400727649	2.881327947628255	TCACTACCAGTGT
chr2	101098733	101098734	chr2:101098734:T:A	rs11688666	T	A	T	Sox1.mouse_HMG_3	9	1	+	4.8004826779437835	-2.0864268298567237	ACAATTTCATGGA
chr2	101111510	101111511	chr2:101111511:G:A	rs116453688	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	101139873	101139874	chr2:101139874:G:A	rs114493084	G	A	G	Sox1.mouse_HMG_3	11	1	+	6.69873545829668	2.588895027310782	TCACCACCATTGA
chr2	101234382	101234383	chr2:101234383:C:T	rs1192801	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	101357594	101357595	chr2:101357595:G:A	rs6543036	G	A	A	Sox1.mouse_HMG_3	11	1	-	5.328281750116487	3.0108080446286904	TCAAAGCCATTCA
chr2	101441765	101441766	chr2:101441766:C:G	rs11123881	C	G	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	101466720	101466721	chr2:101466721:T:C	rs4851455	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	101474728	101474729	chr2:101474729:A:C	chr2:101474729:A:C	A	C	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	101615164	101615165	chr2:101615165:T:C	rs4850984	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	101630179	101630180	chr2:101630180:T:C	rs12475794	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	101736743	101736744	chr2:101736744:T:C	rs59937836	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	101752407	101752408	chr2:101752408:A:G	rs141129206	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	102001907	102001908	chr2:102001908:A:G	rs4851526	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	102001933	102001934	chr2:102001934:A:G	rs72990754	A	G	A	Sox1.mouse_HMG_3	6	1	+	4.44669349794772	3.9701775582924976	TCATTAACATTCA
chr2	102042485	102042486	chr2:102042486:G:A	chr2:102042486:G:A	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.5475331976910915	0.9106705649705102	TAACTTGCATTGA
chr2	102080591	102080592	chr2:102080592:C:T	rs4850996	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	102155554	102155555	chr2:102155555:C:T	rs148845730	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.774875550488732	2.14240805939354	TCACTCCCATTGG
chr2	102479976	102479977	chr2:102479977:C:A	rs6543145	C	A	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	102584845	102584846	chr2:102584846:G:T	rs12712161	G	T	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	102935849	102935850	chr2:102935850:C:G	rs1320110	C	G	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	103138853	103138854	chr2:103138854:G:A	rs13399720	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	103852752	103852753	chr2:103852753:T:A	rs2678669	T	A	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	103869034	103869035	chr2:103869035:G:A	rs55733286	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	103873002	103873003	chr2:103873003:T:C	rs191790900	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.69873545829668	-0.18817404950382755	TCACTACCATAGA
chr2	103975178	103975179	chr2:103975179:G:A	rs111699028	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	104111427	104111428	chr2:104111428:G:C	rs67772867	G	C	G	Sox1.mouse_HMG_3	1	1	-	4.847365205245339	-2.055387582114006	ACTATGACATTGA
chr2	104531543	104531544	chr2:104531544:T:C	rs11898422	T	C	C	Sox1.mouse_HMG_3	4	1	+	5.47786836911129	-1.422227652503357	TCACTTTCATTTA
chr2	104637355	104637356	chr2:104637356:A:C	rs6543262	A	C	C	Sox1.mouse_HMG_3	9	1	-	7.7056957349316395	3.937620697819106	TCAATTGCTTTGA
chr2	104761253	104761254	chr2:104761254:A:G	rs881911	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	105048836	105048837	chr2:105048837:T:C	rs12611887	T	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	105053297	105053298	chr2:105053298:T:C	rs73945012	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	105053305	105053306	chr2:105053306:A:C	rs17634925	A	C	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	105053340	105053341	chr2:105053341:C:T	rs73945013	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	105183334	105183335	chr2:105183335:T:C	rs2679850	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	105490538	105490539	chr2:105490539:C:T	rs11896170	C	T	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	105546808	105546809	chr2:105546809:G:A	rs144831616	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	105546838	105546839	chr2:105546839:C:T	rs10180130	C	T	C	Sox1.mouse_HMG_3	12	1	+	10.586535760983006	10.67231262272971	TCACTATCATTGC
chr2	105644675	105644676	chr2:105644676:T:C	rs4851822	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	105698155	105698156	chr2:105698156:A:T	rs1451714	A	T	A	Sox1.mouse_HMG_3	8	1	+	8.81696149371976	1.908206714404539	TCACTTACATTAA
chr2	105721857	105721858	chr2:105721858:C:T	rs4851087	C	T	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	105756711	105756712	chr2:105756712:T:C	rs13028719	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.069496125193778	0.26846896327677205	TCAATAACATCAA
chr2	105790365	105790366	chr2:105790366:A:G	rs572820442	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.342258740102814	-2.5664960392124065	TCAATGCCATAGG
chr2	105790394	105790395	chr2:105790395:T:C	rs114915500	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	105803481	105803482	chr2:105803482:A:G	rs73949312	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	105940757	105940758	chr2:105940758:T:C	rs114331152	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.6756502077835105	-1.2331045715317097	TCACAACCATTGG
chr2	106028120	106028121	chr2:106028121:G:A	rs145313132	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	106045838	106045839	chr2:106045839:T:G	rs112530024	T	G	T	Sox1.mouse_HMG_3	6	1	-	4.3758091115255535	4.3242557686490155	TAAATCACATTGA
chr2	106099939	106099940	chr2:106099940:A:G	rs6760747	A	G	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	106232925	106232926	chr2:106232926:C:T	rs12712247	C	T	c	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	106274630	106274631	chr2:106274631:G:A	rs7583604	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	106561007	106561008	chr2:106561008:A:G	rs59005995	A	G	a	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	106563210	106563211	chr2:106563211:A:G	rs62156079	A	G	a	Sox1.mouse_HMG_3	3	1	+	8.412610223235227	1.6115830613182234	ACAATTTCATTGG
chr2	106812749	106812750	chr2:106812750:T:C	rs75012206	T	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	106832531	106832532	chr2:106832532:C:T	rs12623034	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	106839401	106839402	chr2:106839402:T:C	rs67385458	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	107169027	107169028	chr2:107169028:G:A	rs11124159	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.14731214864652	5.623828088301742	TAAATAGCATTGG
chr2	107174449	107174450	chr2:107174450:A:C	rs6543480	A	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	107512119	107512120	chr2:107512120:T:C	rs266259	T	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	107779607	107779608	chr2:107779608:A:G	chr2:107779608:A:G	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	108423561	108423562	chr2:108423562:G:A	rs111656651	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	108448001	108448002	chr2:108448002:C:T	rs3820960	C	T	-	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	108449797	108449798	chr2:108449798:C:T	rs111776505	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	108449809	108449810	chr2:108449810:G:T	rs78477242	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	108449831	108449832	chr2:108449832:A:G	rs2460945	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	108584199	108584200	chr2:108584200:T:C	rs2577625	T	C	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	108584208	108584209	chr2:108584209:T:G	rs72833160	T	G	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	108912533	108912534	chr2:108912534:A:G	rs118153293	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	109132846	109132847	chr2:109132847:G:A	rs6740122	G	A	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	109158024	109158025	chr2:109158025:C:T	rs543346582	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	109236424	109236425	chr2:109236425:T:C	rs35234904	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	109380429	109380430	chr2:109380430:T:G	rs112507081	T	G	T	Sox1.mouse_HMG_3	3	1	-	6.463152306073157	4.298987776876732	CCAATAACATTGC
chr2	109644441	109644442	chr2:109644442:G:T	rs62151702	G	T	G	Sox1.mouse_HMG_3	7	1	-	12.47502753278455	7.184526347436519	TCAATACCATTGG
chr2	109644447	109644448	chr2:109644448:G:A	rs56840594	G	A	G	Sox1.mouse_HMG_3	1	1	-	12.47502753278455	7.516755301670923	TCAATACCATTGG
chr2	109700832	109700833	chr2:109700833:A:G	rs4953768	A	G	.	Sox1.mouse_HMG_3	3	1	+	6.619436515621091	-0.1815906462959127	TCAATGTCATTAG
chr2	110170254	110170255	chr2:110170255:C:A	rs566264005	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	110883725	110883726	chr2:110883726:G:A	rs10186144	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	110973274	110973275	chr2:110973275:C:T	rs59899855	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	111017060	111017061	chr2:111017061:C:T	rs4848367	C	T	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	111020986	111020987	chr2:111020987:C:T	rs10200225	C	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	111024433	111024434	chr2:111024434:C:T	rs57698963	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	111055507	111055508	chr2:111055508:A:C	rs875063	A	C	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	111072440	111072441	chr2:111072441:G:A	rs1837370	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	111250138	111250139	chr2:111250139:A:G	rs6727266	A	G	G	Sox1.mouse_HMG_3	3	1	+	6.414207735650361	-0.3868194262666447	TCAATAAAATTAA
chr2	111608281	111608282	chr2:111608282:T:C	rs375642853	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	111660237	111660238	chr2:111660238:C:A	rs4848136	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	111666797	111666798	chr2:111666798:A:G	rs68012394	A	G	G	Sox1.mouse_HMG_3	6	1	-	3.686439739368361	4.199517554478831	TCACCATCATTGC
chr2	111666809	111666810	chr2:111666810:G:A	rs147827832	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	111666814	111666815	chr2:111666815:A:G	rs72823421	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	111735882	111735883	chr2:111735883:C:T	rs78775541	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr2	111748933	111748934	chr2:111748934:C:T	rs71226248	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.016365003021772	-0.093475427964127	TCATTGGCATTGG
chr2	112251545	112251546	chr2:112251546:C:T	rs143048321	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	112543402	112543403	chr2:112543403:A:G	rs79849714	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.62648485404644	-1.260424653754068	TCAAGAACATTGG
chr2	112711574	112711575	chr2:112711575:G:A	rs7424203	G	A	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	112733373	112733374	chr2:112733374:G:A	rs10187872	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	112839162	112839163	chr2:112839163:C:T	rs80238779	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	113005997	113005998	chr2:113005998:A:G	rs895497	A	G	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	113082771	113082772	chr2:113082772:A:G	rs72827886	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	113164518	113164519	chr2:113164519:G:T	rs181518989	G	T	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	113351801	113351802	chr2:113351802:C:T	rs1867866	C	T	.	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	113503159	113503160	chr2:113503160:G:A	rs181166461	G	A	.	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	113527893	113527894	chr2:113527894:C:G	rs11123192	C	G	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	113706511	113706512	chr2:113706512:T:C	rs62168821	T	C	t	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	113847576	113847577	chr2:113847577:T:C	rs4849293	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.625367308171917	-1.2833874711433029	ACAATAGCAATGA
chr2	113986939	113986940	chr2:113986940:G:A	rs11694305	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	114071605	114071606	chr2:114071606:A:G	rs75988737	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.42638601630901	-2.4823687630062112	TCAAGTGCATTGG
chr2	114133818	114133819	chr2:114133819:G:A	rs11898985	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr2	115034842	115034843	chr2:115034843:C:T	rs17043916	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	115524238	115524239	chr2:115524239:G:C	rs1900750	G	C	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	115940047	115940048	chr2:115940048:G:A	rs17045276	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	116238592	116238593	chr2:116238593:C:A	rs76721394	C	A	c	Sox1.mouse_HMG_3	11	1	+	7.138737229114312	7.595725490247977	TCAATAGTATTCA
chr2	116238653	116238654	chr2:116238654:A:G	rs34267752	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	116438773	116438774	chr2:116438774:G:T	rs60815001	G	T	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	117056347	117056348	chr2:117056348:C:A	rs12711867	C	A	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	117727017	117727018	chr2:117727018:C:T	rs17498503	C	T	C	Sox1.mouse_HMG_3	11	1	-	7.481669400164902	3.371828969179004	TCAATGCCATCGT
chr2	117812696	117812697	chr2:117812697:G:A	rs17567144	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	117865367	117865368	chr2:117865368:C:G	rs1439493135	C	G	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	118080704	118080705	chr2:118080705:A:G	rs2161830	A	G	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	118311355	118311356	chr2:118311356:A:G	rs12473187	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.430376535716743	-1.478378243598478	TCACTCCTATTGA
chr2	118729182	118729183	chr2:118729183:A:G	rs332702	A	G	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	118808982	118808983	chr2:118808983:C:A	rs10191670	C	A	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	118842448	118842449	chr2:118842449:C:T	rs184945714	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.615274731753001	0.505434300767102	TGAATGTCATTGC
chr2	118842779	118842780	chr2:118842780:C:A	rs61734176	C	A	C	Sox1.mouse_HMG_3	8	1	-	4.847365205245339	4.847365205245339	ACAATGACGTTGA
chr2	118994641	118994642	chr2:118994642:A:G	rs534643409	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	119070039	119070040	chr2:119070040:A:G	rs1439951	A	G	A	Sox1.mouse_HMG_3	5	1	+	5.866397892572074	4.633725121504984	TCAATATCATTTC
chr2	119070048	119070049	chr2:119070049:A:G	rs1439952	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	119119391	119119392	chr2:119119392:G:A	rs77990273	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	119256215	119256216	chr2:119256216:G:A	rs565720597	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.952067309701304	0.8422268787154055	TCACATCCATTGG
chr2	119400430	119400431	chr2:119400431:C:G	rs2422464	C	G	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr2	120265163	120265164	chr2:120265164:G:T	rs7587975	G	T	T	Sox1.mouse_HMG_3	3	1	-	7.092737551546286	9.256902080742709	ACACTGACATTGC
chr2	120361344	120361345	chr2:120361345:A:C	rs1548039	A	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	120712111	120712112	chr2:120712112:C:T	rs12470725	C	T	C	Sox1.mouse_HMG_3	12	1	-	4.797037380298033	8.085005856621235	TCACTGTCAGTGG
chr2	120804156	120804157	chr2:120804157:C:T	rs12467239	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	120836574	120836575	chr2:120836575:C:A	rs970914	C	A	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	120885298	120885299	chr2:120885299:G:C	rs113965320	G	C	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	120936649	120936650	chr2:120936650:T:C	rs11902937	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	121186754	121186755	chr2:121186755:A:G	rs11900914	A	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	121279294	121279295	chr2:121279295:A:C	rs2953083	A	C	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	122166580	122166581	chr2:122166581:T:C	rs147621133	T	C	T	Sox1.mouse_HMG_3	9	1	-	5.988339074028612	9.107173544716586	TCACTTCCAATGA
chr2	122294198	122294199	chr2:122294199:G:A	rs17007488	G	A	A	Sox1.mouse_HMG_3	12	1	-	5.227740067096187	5.313516928842889	TCACATTCATTGC
chr2	122481408	122481409	chr2:122481409:C:T	rs4608527	C	T	C	Sox1.mouse_HMG_3	12	1	-	6.6715381274723065	9.959506603795509	TCAATTTCATTCG
chr2	122868347	122868348	chr2:122868348:A:T	rs17008792	A	T	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	123074652	123074653	chr2:123074653:C:A	rs1515166	C	A	A	Sox1.mouse_HMG_3	3	1	+	2.958186025711171	5.1223505549075945	TCTCTGCCATTGC
chr2	123373329	123373330	chr2:123373330:A:C	rs36109714	A	C	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	123373333	123373334	chr2:123373334:G:A	rs34758148	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	123596849	123596850	chr2:123596850:T:C	rs4848872	T	C	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	124080599	124080600	chr2:124080600:T:C	rs72844498	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.474302895830373	-2.4126066119701353	CCAATTGCATTGG
chr2	124542989	124542990	chr2:124542990:T:C	rs6734052	T	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	124807245	124807246	chr2:124807246:G:T	rs314718	G	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	125640919	125640920	chr2:125640920:A:T	rs35806075	A	T	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	125656724	125656725	chr2:125656725:A:G	rs72612000	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	125717153	125717154	chr2:125717154:T:C	rs13034852	T	C	T	Sox1.mouse_HMG_3	12	1	+	5.741669671347038	5.655892809600335	TCAATTCCATTTT
chr2	126323235	126323236	chr2:126323236:C:G	rs360298	C	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	126676869	126676870	chr2:126676870:A:G	rs28387153	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	126797781	126797782	chr2:126797782:C:T	rs13025983	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	126801126	126801127	chr2:126801127:C:T	rs6431180	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	126884562	126884563	chr2:126884563:G:A	rs182165352	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	126884566	126884567	chr2:126884567:C:T	rs10203501	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	126933220	126933221	chr2:126933221:C:A	rs12616704	C	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	127059969	127059970	chr2:127059970:C:T	rs880436	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	127104189	127104190	chr2:127104190:T:A	rs4663096	T	A	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	127404655	127404656	chr2:127404656:A:G	rs186084038	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	127634971	127634972	chr2:127634972:A:C	rs4662750	A	C	C	Sox1.mouse_HMG_3	8	1	+	7.19216073533603	0.28340595602080954	ACACTAATATTGA
chr2	127710788	127710789	chr2:127710789:A:G	rs2270160	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	127858539	127858540	chr2:127858540:G:A	chr2:127858540:G:A	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	128410682	128410683	chr2:128410683:C:T	rs10205190	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	128439235	128439236	chr2:128439236:C:T	rs11900177	C	T	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	128439264	128439265	chr2:128439265:T:C	rs74607594	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	128464611	128464612	chr2:128464612:T:C	rs113773226	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	128512118	128512119	chr2:128512119:T:C	rs841089	T	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	128581809	128581810	chr2:128581810:G:A	rs7556830	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	128746532	128746533	chr2:128746533:T:G	rs12465763	T	G	T	Sox1.mouse_HMG_3	6	1	-	4.292427048379167	4.240873705502631	TCAAAAACACTGA
chr2	128752662	128752663	chr2:128752663:T:C	rs1316511	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr2	128782518	128782519	chr2:128782519:T:C	rs7425326	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	128813807	128813808	chr2:128813808:G:A	rs6710277	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	129070290	129070291	chr2:129070291:T:C	rs17049071	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.34591322711157	-0.5628415522036505	TCAAATACATTAA
chr2	129481694	129481695	chr2:129481695:T:C	rs62157324	T	C	T	Sox1.mouse_HMG_3	12	1	+	6.548527805119599	6.462750943372898	TCATTACCATTGT
chr2	129672659	129672660	chr2:129672660:C:T	rs3109277	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	129676084	129676085	chr2:129676085:T:C	rs3109281	T	C	T	Sox1.mouse_HMG_3	0	1	-	4.722647321952804	0.6962247762161629	ACAATTGCATTCC
chr2	129792596	129792597	chr2:129792597:C:T	rs114899416	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	129881971	129881972	chr2:129881972:A:G	rs10928934	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.4719607489119735	-0.16325204689264106	TCACATCCAGTGA
chr2	129885004	129885005	chr2:129885005:T:G	rs10928936	T	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	130148793	130148794	chr2:130148794:A:G	rs35796566	A	G	.	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	130166959	130166960	chr2:130166960:G:A	rs28404396	G	A	.	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	130166972	130166973	chr2:130166973:T:A	rs28473698	T	A	.	Sox1.mouse_HMG_3	9	1	+	10.015047888797637	3.128138380997131	TCAATGACATTCA
chr2	130293901	130293902	chr2:130293902:T:G	rs938867	T	G	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	130802470	130802471	chr2:130802471:A:G	rs2403235	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	131032289	131032290	chr2:131032290:C:T	rs79764075	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	131512562	131512563	chr2:131512563:C:T	rs2103256	C	T	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	131512571	131512572	chr2:131512572:C:T	rs4464325	C	T	.	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	131512601	131512602	chr2:131512602:C:T	rs2091456	C	T	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	131687134	131687135	chr2:131687135:T:C	rs4850236	T	C	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	131714054	131714055	chr2:131714055:C:T	rs4100612	C	T	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	131836638	131836639	chr2:131836639:A:T	rs12471911	A	T	a	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	132034984	132034985	chr2:132034985:T:C	rs13026350	T	C	-	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	132277331	132277332	chr2:132277332:A:T	rs149770187	A	T	.	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	132659291	132659292	chr2:132659292:G:A	rs2566538	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	133139720	133139721	chr2:133139721:C:T	rs1434227	C	T	T	Sox1.mouse_HMG_3	1	1	+	7.286252201614204	2.327979970500579	TCACTGTCATTCA
chr2	133148006	133148007	chr2:133148007:T:C	rs12613747	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	133523459	133523460	chr2:133523460:C:T	rs1017365	C	T	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	133674773	133674774	chr2:133674774:C:T	rs570370249	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	133675455	133675456	chr2:133675456:G:A	rs573783785	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	133760614	133760615	chr2:133760615:A:G	rs4386376	A	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	133780833	133780834	chr2:133780834:C:T	rs10184576	C	T	T	Sox1.mouse_HMG_3	11	1	-	5.628263529869383	1.518423098883484	TTACTATCATTGC
chr2	133821690	133821691	chr2:133821691:T:G	rs79854988	T	G	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	134073546	134073547	chr2:134073547:C:A	rs1257370	C	A	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	134154542	134154543	chr2:134154543:G:A	rs2139311	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	134261225	134261226	chr2:134261226:A:G	rs3828175	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.452805302528255	1.5658957947277472	ACAATCACATTGA
chr2	134458703	134458704	chr2:134458704:C:G	rs12105166	C	G	C	Sox1.mouse_HMG_3	7	1	+	5.497481426983843	-1.3822549634807682	TTAAATACATTGA
chr2	134499363	134499364	chr2:134499364:A:G	rs17787563	A	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	135037872	135037873	chr2:135037873:C:T	rs10167901	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	135926740	135926741	chr2:135926741:C:T	rs116190965	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	136236347	136236348	chr2:136236348:A:G	rs10183863	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	136251435	136251436	chr2:136251436:A:G	rs4477975	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	136259489	136259490	chr2:136259490:A:C	rs11890854	A	C	A	Sox1.mouse_HMG_3	6	1	+	5.80865371691703	5.757100374040492	TCACTGACATTAC
chr2	136297810	136297811	chr2:136297811:T:C	rs4325815	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr2	136392049	136392050	chr2:136392050:A:T	rs16833988	A	T	A	Sox1.mouse_HMG_3	1	1	-	6.742306468444804	4.797825912199086	ATAATTTCATTGA
chr2	136392070	136392071	chr2:136392071:C:T	rs79593449	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	137554614	137554615	chr2:137554615:A:G	rs7604024	A	G	G	Sox1.mouse_HMG_3	9	1	-	5.82642889336527	-1.0604806144352377	TCACTCACATTGG
chr2	138087380	138087381	chr2:138087381:A:G	rs10928646	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	138107018	138107019	chr2:138107019:C:T	rs144771410	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	138265376	138265377	chr2:138265377:T:C	rs8179749	T	C	C	Sox1.mouse_HMG_3	2	1	-	6.59434130935213	-0.3144134699630907	TCACTAACAGTGG
chr2	138448282	138448283	chr2:138448283:C:T	rs4560178	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	138502792	138502793	chr2:138502793:C:G	chr2:138502793:C:G	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	139864504	139864505	chr2:139864505:A:T	rs116703266	A	T	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	139973621	139973622	chr2:139973622:A:C	rs13004411	A	C	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	139985608	139985609	chr2:139985609:C:A	rs115150591	C	A	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	140154961	140154962	chr2:140154962:A:G	rs112706321	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	140270356	140270357	chr2:140270357:A:G	rs3748865	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	140442082	140442083	chr2:140442083:A:T	rs1878742	A	T	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	140540897	140540898	chr2:140540898:A:C	rs6729619	A	C	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	140714464	140714465	chr2:140714465:T:C	rs10177120	T	C	t	Sox1.mouse_HMG_3	3	1	-	7.990759273149784	1.1897321112327783	TCAAATCCATTGT
chr2	141322054	141322055	chr2:141322055:A:T	rs111739657	A	T	A	Sox1.mouse_HMG_3	0	1	+	4.955092822643554	7.780849419000196	ACAGTGACATTGA
chr2	141330623	141330624	chr2:141330624:G:T	rs111464452	G	T	G	Sox1.mouse_HMG_3	7	1	-	9.76599195372759	4.4754907683795615	ACAATTACATTGC
chr2	141595332	141595333	chr2:141595333:G:A	rs72855461	G	A	G	Sox1.mouse_HMG_3	7	1	-	12.26520985754544	8.632742366450248	ACAATTACATTGA
chr2	141595726	141595727	chr2:141595727:G:A	rs111466258	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	141728831	141728832	chr2:141728832:A:G	rs2164694	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	141887565	141887566	chr2:141887566:A:G	rs13429414	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.97470867219741	0.17368151028040324	ACAATTAAATTGA
chr2	141889972	141889973	chr2:141889973:C:T	rs546297728	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	141889974	141889975	chr2:141889975:T:C	rs7590166	T	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	143262567	143262568	chr2:143262568:A:C	rs75993975	A	C	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	143501973	143501974	chr2:143501974:G:A	rs6760183	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	143511835	143511836	chr2:143511836:C:A	rs12691681	C	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	144461688	144461689	chr2:144461689:G:A	rs17677410	G	A	G	Sox1.mouse_HMG_3	11	1	+	8.240035786024507	4.130195355038608	TCACTTCCATCGA
chr2	145386715	145386716	chr2:145386716:G:A	rs13383375	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	146244829	146244830	chr2:146244830:C:A	rs2194682	C	A	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	147278575	147278576	chr2:147278576:T:G	chr2:147278576:T:G	T	G	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	147425097	147425098	chr2:147425098:T:C	rs12624284	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	147652999	147653000	chr2:147653000:A:G	rs7574440	A	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	147945740	147945741	chr2:147945741:C:T	rs1531032	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	148028211	148028212	chr2:148028212:T:C	rs1234396	T	C	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	148602378	148602379	chr2:148602379:T:C	rs7583200	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	148680641	148680642	chr2:148680642:G:A	rs6759083	G	A	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	149063373	149063374	chr2:149063374:T:C	rs11682788	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	149156344	149156345	chr2:149156345:T:A	rs229319	T	A	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	149755109	149755110	chr2:149755110:T:G	rs13004224	T	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	149813706	149813707	chr2:149813707:C:T	rs17433263	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	149841421	149841422	chr2:149841422:T:G	rs115957777	T	G	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	149974945	149974946	chr2:149974946:G:A	rs1437944	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	150066341	150066342	chr2:150066342:T:C	rs330613	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	150191717	150191718	chr2:150191718:A:C	rs79037091	A	C	A	Sox1.mouse_HMG_3	3	1	+	6.504864967206769	4.340700438010345	TCAAAATCATTAA
chr2	150438801	150438802	chr2:150438802:G:C	rs78691076	G	C	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	150526755	150526756	chr2:150526756:T:C	rs574843731	T	C	T	Sox1.mouse_HMG_3	12	1	-	6.104490358020287	2.8165218816970854	ACAATAACATTTA
chr2	150695815	150695816	chr2:150695816:A:T	rs9973439	A	T	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	150735799	150735800	chr2:150735800:G:A	rs16828597	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	150879290	150879291	chr2:150879291:G:T	rs726503	G	T	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	150879292	150879293	chr2:150879293:T:A	rs115785866	T	A	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	150888291	150888292	chr2:150888292:C:T	rs78904109	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	151107207	151107208	chr2:151107208:G:A	rs11889500	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	151569177	151569178	chr2:151569178:T:C	rs3732312	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	151638746	151638747	chr2:151638747:C:G	rs889976770	C	G	C	Sox1.mouse_HMG_3	11	1	-	6.18065468753497	1.613825995415406	TCACTTTCAGTGT
chr2	152514956	152514957	chr2:152514957:C:A	rs12612608	C	A	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	152829592	152829593	chr2:152829593:C:T	rs2114651	C	T	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	153223327	153223328	chr2:153223328:T:C	rs13021536	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	153734056	153734057	chr2:153734057:T:C	rs76841911	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.329612040276652	-2.5572974675238562	TCTATTTCATTGG
chr2	154062190	154062191	chr2:154062191:G:A	rs10199337	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	154402378	154402379	chr2:154402379:T:C	rs551618021	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	154760179	154760180	chr2:154760180:T:G	rs2961962	T	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	154762801	154762802	chr2:154762802:T:C	rs1867648	T	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	154850245	154850246	chr2:154850246:C:T	rs76416475	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.565983587443075	0.6077113563294492	TCACTTGCATTTA
chr2	155452329	155452330	chr2:155452330:T:A	rs1023977	T	A	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	155874119	155874120	chr2:155874120:C:A	rs538349215	C	A	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	156010106	156010107	chr2:156010107:T:C	rs1949991	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	156343732	156343733	chr2:156343733:C:A	rs182093429	C	A	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	156565067	156565068	chr2:156565068:A:G	rs59986751	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	156931751	156931752	chr2:156931752:T:C	rs73013794	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	157019549	157019550	chr2:157019550:A:C	rs73010790	A	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	157160397	157160398	chr2:157160398:G:A	rs7596456	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	157477507	157477508	chr2:157477508:T:C	rs145203333	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	157840669	157840670	chr2:157840670:C:T	rs116069638	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	158458490	158458491	chr2:158458491:G:T	rs6437182	G	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	158539447	158539448	chr2:158539448:A:T	rs764336543	A	T	A	Sox1.mouse_HMG_3	2	1	-	4.7918239202432105	11.700578699558429	ACTATTTCATTGA
chr2	158560447	158560448	chr2:158560448:A:G	rs72936958	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	159201938	159201939	chr2:159201939:T:C	rs13003172	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	159284938	159284939	chr2:159284939:G:A	rs73968311	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	159347186	159347187	chr2:159347187:G:A	rs7576570	G	A	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	159449751	159449752	chr2:159449752:C:T	rs4142233	C	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	159900421	159900422	chr2:159900422:T:C	rs72957580	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	160037520	160037521	chr2:160037521:G:T	rs74457992	G	T	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	160223002	160223003	chr2:160223003:G:A	rs72623112	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	160339333	160339334	chr2:160339334:T:A	rs74843684	T	A	T	Sox1.mouse_HMG_3	4	1	+	6.2894484287511006	1.6542356329464858	TTAATAACATTCA
chr2	160373822	160373823	chr2:160373823:A:G	rs76502099	A	G	A	Sox1.mouse_HMG_3	8	1	+	7.156960379315384	0.248205600000164	TTAATTGCATTGC
chr2	160516920	160516921	chr2:160516921:A:G	rs80219949	A	G	A	Sox1.mouse_HMG_3	9	1	+	5.326747006868395	8.445581477556368	ACAATTCCAATGA
chr2	160898515	160898516	chr2:160898516:T:C	rs1710654	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	162059375	162059376	chr2:162059376:A:C	rs758265516	A	C	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	162344896	162344897	chr2:162344897:C:T	rs75779674	C	T	C	Sox1.mouse_HMG_3	11	1	-	7.782499255916164	3.6726588249302656	TCACTGACATCGA
chr2	162587498	162587499	chr2:162587499:C:T	rs1385865	C	T	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	162926883	162926884	chr2:162926884:T:C	chr2:162926884:T:C	T	C	T	Sox1.mouse_HMG_3	0	1	+	4.409605706986639	-2.442573435106645	TCAATGACATTTG
chr2	163056082	163056083	chr2:163056083:C:T	rs7592618	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	163249110	163249111	chr2:163249111:C:T	rs76303734	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.841945510864212	1.7321050798783144	TCAATATCCTTGC
chr2	163452748	163452749	chr2:163452749:T:C	rs12989737	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	163523687	163523688	chr2:163523688:G:A	rs2389932	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	163601464	163601465	chr2:163601465:A:G	rs76515372	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.5475686775689095	-2.3611861017463114	TCACTCACATTCA
chr2	163614685	163614686	chr2:163614686:G:A	rs11674003	G	A	g	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	163630937	163630938	chr2:163630938:C:T	rs115118192	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.1307791579229765	5.21655601966968	ACAAATACATTGC
chr2	164108309	164108310	chr2:164108310:T:C	rs7594255	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	164470759	164470760	chr2:164470760:C:T	rs12464219	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	164697791	164697792	chr2:164697792:C:T	rs78970517	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr2	164722780	164722781	chr2:164722781:G:A	rs72878835	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	164843093	164843094	chr2:164843094:C:T	rs3806544	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	165164382	165164383	chr2:165164383:G:A	rs7579000	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	165243324	165243325	chr2:165243325:G:A	rs188220072	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	165253361	165253362	chr2:165253362:T:C	rs10497258	T	C	t	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	165562699	165562700	chr2:165562700:A:G	rs6708364	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	165637478	165637479	chr2:165637479:A:T	rs150701870	A	T	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	165947144	165947145	chr2:165947145:T:A	chr2:165947145:T:A	T	A	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	165950548	165950549	chr2:165950549:G:C	rs78136867	G	C	G	Sox1.mouse_HMG_3	3	1	+	4.768931213299528	9.405793846020108	TCAGTAGCAGTGA
chr2	166146638	166146639	chr2:166146639:A:G	rs7591278	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.3295013560955535	-1.5226777859977303	TCAGTACTATTGA
chr2	166739186	166739187	chr2:166739187:C:G	rs62194550	C	G	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	167924308	167924309	chr2:167924309:C:T	rs80004484	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	167997045	167997046	chr2:167997046:A:C	rs4667996	A	C	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	168025945	168025946	chr2:168025946:T:C	rs6717944	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.615274731753001	-2.2934800475622206	TGAATGTCATTGC
chr2	168141890	168141891	chr2:168141891:A:G	rs3769405	A	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	168222379	168222380	chr2:168222380:T:G	rs1807984	T	G	T	Sox1.mouse_HMG_3	11	1	+	5.316707074568354	12.201009472175713	TCAATTGCATTTT
chr2	168796417	168796418	chr2:168796418:C:G	rs16855894	C	G	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	168920786	168920787	chr2:168920787:A:G	rs78529720	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	169069350	169069351	chr2:169069351:A:G	rs2287611	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	169081697	169081698	chr2:169081698:G:A	rs61995932	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	169397900	169397901	chr2:169397901:G:A	rs141434288	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	169468936	169468937	chr2:169468937:T:C	rs74946619	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	169508001	169508002	chr2:169508002:A:G	rs80090638	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr2	169620163	169620164	chr2:169620164:A:G	rs72623202	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.385153325278779	-2.5017561825217287	TCCATGACATTGG
chr2	169620168	169620169	chr2:169620169:A:G	rs76748975	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.385153325278779	-2.5149426963358685	TCCATGACATTGG
chr2	169767249	169767250	chr2:169767250:A:G	rs36124041	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.952984872119121	-1.9557699071960992	TCACTGTCATAGA
chr2	169925827	169925828	chr2:169925828:C:T	rs13016918	C	T	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	169925845	169925846	chr2:169925846:C:T	rs61092155	C	T	C	Sox1.mouse_HMG_3	12	1	-	10.817392164938775	14.105360641261978	TCAATGGCATTGG
chr2	170017698	170017699	chr2:170017699:A:T	rs10497355	A	T	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	170073369	170073370	chr2:170073370:G:A	rs10202446	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr2	170236065	170236066	chr2:170236066:A:G	rs1324885953	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.661203595901313	-2.2388924257133342	TCAATAGCTGTGA
chr2	170283151	170283152	chr2:170283152:C:T	rs12612480	C	T	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	170441829	170441830	chr2:170441830:C:T	rs116020262	C	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	170691654	170691655	chr2:170691655:G:A	rs12466537	G	A	G	Sox1.mouse_HMG_3	5	1	-	5.294768989699401	9.107173544716586	TCACTCCCAGTGA
chr2	170708538	170708539	chr2:170708539:A:G	rs1861465	A	G	A	Sox1.mouse_HMG_3	8	1	+	2.980031297225883	-3.9287234820893375	TCACTGCCACTGC
chr2	171107039	171107040	chr2:171107040:C:T	rs10207361	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	171260841	171260842	chr2:171260842:G:A	rs62169050	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	171572218	171572219	chr2:171572219:G:A	rs2356791	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	171816888	171816889	chr2:171816889:A:G	rs12053046	A	G	a	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	171816942	171816943	chr2:171816943:G:A	rs6716901	G	A	g	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	172231882	172231883	chr2:172231883:C:T	rs10167005	C	T	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	172275526	172275527	chr2:172275527:G:C	rs10193528	G	C	C	Sox1.mouse_HMG_3	6	1	+	6.286959375332135	6.7119219721108205	TCACTAGCAATGA
chr2	172337551	172337552	chr2:172337552:A:G	rs7556723	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	172405435	172405436	chr2:172405436:G:A	rs114982173	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	172422878	172422879	chr2:172422879:A:G	rs11686909	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	172449879	172449880	chr2:172449880:C:T	rs2178471	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	172735206	172735207	chr2:172735207:T:G	rs3813813	T	G	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	172938952	172938953	chr2:172938953:C:A	rs12986507	C	A	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	172938972	172938973	chr2:172938973:A:G	rs12986495	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.609272739797124	-2.1917544221198817	TCAATGTCCTTGC
chr2	173050278	173050279	chr2:173050279:G:A	rs4972527	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	173051687	173051688	chr2:173051688:A:T	chr2:173051688:A:T	A	T	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	173101911	173101912	chr2:173101912:G:A	rs76353190	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	173127072	173127073	chr2:173127073:A:G	rs3769192	A	G	A	Sox1.mouse_HMG_3	8	1	+	8.41674044467519	1.5079856653599695	TCAATAACATTAG
chr2	173504592	173504593	chr2:173504593:T:A	rs117131394	T	A	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	173581179	173581180	chr2:173581180:A:T	rs77886437	A	T	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	173844911	173844912	chr2:173844912:G:A	rs72919314	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.315855285427972	1.2060148544420732	TCACTTGCATCGC
chr2	174389555	174389556	chr2:174389556:G:C	rs10180988	G	C	c	Sox1.mouse_HMG_3	6	1	-	5.717217289639178	5.292254692860492	TCTATTCCATTGT
chr2	174593848	174593849	chr2:174593849:A:G	rs1209399841	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	174749987	174749988	chr2:174749988:G:A	rs2229957	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	174844648	174844649	chr2:174844649:C:T	rs146672478	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr2	174902397	174902398	chr2:174902398:C:T	rs3771912	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	174946093	174946094	chr2:174946094:C:T	rs574307995	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	175034825	175034826	chr2:175034826:C:T	rs1044109595	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.6331769225391835	0.5233364915532857	ACAATCCCAGTGA
chr2	175234444	175234445	chr2:175234445:G:A	rs16863099	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	175844257	175844258	chr2:175844258:A:C	rs190964278	A	C	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	175890465	175890466	chr2:175890466:T:G	rs78426082	T	G	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr2	175948794	175948795	chr2:175948795:A:C	rs57025757	A	C	A	Sox1.mouse_HMG_3	0	1	-	7.727541006446353	0.8753618643530674	TCAATTGCAATGA
chr2	176462299	176462300	chr2:176462300:C:T	rs890110130	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	176550003	176550004	chr2:176550004:T:C	rs2922333	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	176783661	176783662	chr2:176783662:C:A	rs72934892	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	176845829	176845830	chr2:176845830:G:A	rs1866132	G	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	176845834	176845835	chr2:176845835:T:G	rs1866133	T	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr2	176999868	176999869	chr2:176999869:T:A	rs1406573	T	A	A	Sox1.mouse_HMG_3	1	1	+	6.221064325066049	4.276583768820332	TTAAAAACATTGA
chr2	177213274	177213275	chr2:177213275:C:T	rs1037658893	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	177213280	177213281	chr2:177213281:C:T	rs1056235695	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr2	177225132	177225133	chr2:177225133:G:A	rs2706112	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	177933245	177933246	chr2:177933246:T:C	rs10164794	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	178556966	178556967	chr2:178556967:A:G	rs9808377	A	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	178825505	178825506	chr2:178825506:C:T	rs6433735	C	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	179580290	179580291	chr2:179580291:G:T	rs80300097	G	T	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	179638545	179638546	chr2:179638546:T:C	rs1515278	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	179744804	179744805	chr2:179744805:C:T	rs79076017	C	T	T	Sox1.mouse_HMG_3	11	1	-	6.021839582898576	1.9119991519126778	TAAATAGCATTGT
chr2	179874722	179874723	chr2:179874723:C:A	rs1486236	C	A	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	180007523	180007524	chr2:180007524:A:T	rs4894145	A	T	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	180090635	180090636	chr2:180090636:T:C	rs6723904	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.9495676441256276	-0.9591871351895926	TCAATATCACTGT
chr2	180130547	180130548	chr2:180130548:T:C	rs10497559	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.057700696574228	-1.829208811226279	ACACTTGCATTCA
chr2	180547703	180547704	chr2:180547704:C:T	rs1490885649	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	180600008	180600009	chr2:180600009:C:T	rs35587150	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	180600016	180600017	chr2:180600017:G:T	rs17364268	G	T	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	180633574	180633575	chr2:180633575:C:G	rs4667223	C	G	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	181203925	181203926	chr2:181203926:T:A	rs4667142	T	A	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	181208636	181208637	chr2:181208637:T:C	rs13032688	T	C	C	Sox1.mouse_HMG_3	0	1	+	2.966844783411744	-3.885334358681541	TCACTGCCATAGC
chr2	181372042	181372043	chr2:181372043:C:T	rs79356370	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	181486584	181486585	chr2:181486585:C:A	rs155105	C	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	182088780	182088781	chr2:182088781:A:G	rs143015425	A	G	A	Sox1.mouse_HMG_3	5	1	-	6.022853791802557	2.210449236785373	TTAATTACATTAA
chr2	182088799	182088800	chr2:182088800:C:A	rs1196151	C	A	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	182164884	182164885	chr2:182164885:A:G	rs1196067	A	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr2	182435918	182435919	chr2:182435919:A:G	rs10207132	A	G	A	Sox1.mouse_HMG_3	4	1	-	7.459439820607152	0.5593437989925045	TTACTGACATTGA
chr2	182503994	182503995	chr2:182503995:T:A	rs11678901	T	A	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	182521582	182521583	chr2:182521583:C:G	rs66769715	C	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	182521605	182521606	chr2:182521606:C:T	rs67361657	C	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr2	182558882	182558883	chr2:182558883:A:G	rs35960621	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	182558909	182558910	chr2:182558910:C:T	rs1430156	C	T	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	182907559	182907560	chr2:182907560:C:T	rs749290790	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	184067242	184067243	chr2:184067243:A:G	rs13411857	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	184119949	184119950	chr2:184119950:C:A	rs182285045	C	A	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	184781112	184781113	chr2:184781113:A:G	rs10497657	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr2	185300530	185300531	chr2:185300531:A:G	rs6712589	A	G	A	Sox1.mouse_HMG_3	7	1	-	5.28198583927445	8.914453330369643	TCAAGAATATTGA
chr2	186159291	186159292	chr2:186159292:A:T	rs6725392	A	T	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	186336584	186336585	chr2:186336585:G:T	rs2044683	G	T	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	187489306	187489307	chr2:187489307:A:G	rs8176606	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.462074745104003	-1.424834762696506	TCACTTTCATAGA
chr2	188415877	188415878	chr2:188415878:C:G	rs4381754	C	G	C	Sox1.mouse_HMG_3	6	1	+	7.667699837840772	7.242737241062088	TTAATTCCATTGT
chr2	188415902	188415903	chr2:188415903:A:G	rs4476318	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	188451245	188451246	chr2:188451246:A:C	rs150297537	A	C	A	Sox1.mouse_HMG_3	8	1	+	5.379835092993025	-1.528919686322196	TCAAAGACATTCA
chr2	188524140	188524141	chr2:188524141:A:G	rs558330372	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	188605086	188605087	chr2:188605087:A:G	rs1605462	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	188609053	188609054	chr2:188609054:C:T	rs6434291	C	T	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	188788631	188788632	chr2:188788632:G:A	rs183236548	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.179905889740008	5.265682751486711	TGAATGACATTGC
chr2	188813581	188813582	chr2:188813582:G:T	rs6753283	G	T	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	188940352	188940353	chr2:188940353:A:G	rs746595467	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr2	188980788	188980789	chr2:188980789:A:G	rs1914037	A	G	G	Sox1.mouse_HMG_3	3	1	+	5.539859200033279	-1.2611679618837264	ACAATATCATTTA
chr2	189013312	189013313	chr2:189013313:G:A	rs1434570164	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	189016178	189016179	chr2:189016179:G:A	rs62181745	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	189016221	189016222	chr2:189016222:C:G	rs4667258	C	G	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	189124576	189124577	chr2:189124577:C:T	rs1515869	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	189276416	189276417	chr2:189276417:T:C	rs76287931	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.048886456607226	-1.8512095650074207	TCACTTACAGTAA
chr2	189286675	189286676	chr2:189286676:A:G	rs16831325	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	189312125	189312126	chr2:189312126:G:A	rs113853122	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	190094902	190094903	chr2:190094903:G:C	rs574628405	G	C	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	190124298	190124299	chr2:190124299:T:G	rs62186791	T	G	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr2	190180465	190180466	chr2:190180466:C:G	rs12993362	C	G	c	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	190180481	190180482	chr2:190180482:T:G	rs13019730	T	G	t	Sox1.mouse_HMG_3	4	1	+	7.403898535605023	0.5038025139903761	TTACTTTCATTGA
chr2	190197304	190197305	chr2:190197305:C:T	rs11894667	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	190283831	190283832	chr2:190283832:G:A	rs2664253	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	190305221	190305222	chr2:190305222:G:A	rs291436	G	A	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	190540237	190540238	chr2:190540238:G:A	rs4853718	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	190626547	190626548	chr2:190626548:A:G	rs59629752	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	190841985	190841986	chr2:190841986:G:T	rs10198390	G	T	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	190842020	190842021	chr2:190842021:C:T	rs73047165	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr2	190981264	190981265	chr2:190981265:C:G	rs3755312	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	191155891	191155892	chr2:191155892:A:C	rs1031507	A	C	C	Sox1.mouse_HMG_3	3	1	+	7.5657966763711	5.401632147174675	TCAAATGCATTGT
chr2	191355309	191355310	chr2:191355310:A:G	rs34303459	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	191812227	191812228	chr2:191812228:G:A	rs555052459	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	191830380	191830381	chr2:191830381:T:C	rs7569546	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	192107802	192107803	chr2:192107803:A:C	rs7557901	A	C	A	Sox1.mouse_HMG_3	5	1	-	7.605899328496676	7.0968094555117975	TCAATTTTATTGG
chr2	193101805	193101806	chr2:193101806:A:T	rs958472576	A	T	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	195168761	195168762	chr2:195168762:T:C	rs6414142	T	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	195566355	195566356	chr2:195566356:G:C	rs147659887	G	C	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	196132478	196132479	chr2:196132479:T:C	rs10931722	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	196161991	196161992	chr2:196161992:T:C	rs1519600	T	C	C	Sox1.mouse_HMG_3	9	1	+	8.865120856813752	1.9782113490132436	TCAATCACATTGT
chr2	196244539	196244540	chr2:196244540:A:G	rs12990533	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.1825626554847055	-1.6184645064323007	TCAATGACATGGC
chr2	196244837	196244838	chr2:196244838:G:A	rs116492017	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.142814994489864	0.18454276337623954	TCAATTTCATTTC
chr2	196249773	196249774	chr2:196249774:T:C	rs555558245	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	196308091	196308092	chr2:196308092:G:A	rs2305567	G	A	A	Sox1.mouse_HMG_3	7	1	-	5.48185631123688	1.8493888201416877	TCACTGCCATTTA
chr2	196696527	196696528	chr2:196696528:G:A	rs1114164	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.272192196139681	0.3139199650260549	TCAAAGTCATTAA
chr2	196903662	196903663	chr2:196903663:G:A	rs150396935	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	197075889	197075890	chr2:197075890:A:C	rs137930548	A	C	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	197393070	197393071	chr2:197393071:T:C	rs4685	T	C	C	Sox1.mouse_HMG_3	5	1	+	7.167785181774265	3.3553806267570807	TCAAATACATTGG
chr2	197497293	197497294	chr2:197497294:T:C	rs8539	T	C	.	Sox1.mouse_HMG_3	4	1	-	5.065611483499831	2.8007282576897974	ACAAAAACATTGG
chr2	197521450	197521451	chr2:197521451:C:T	rs9973444	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	197924288	197924289	chr2:197924289:T:C	rs12995110	T	C	-	Sox1.mouse_HMG_3	8	1	-	7.120907188755945	0.21215240944072478	ACAAAGACATTGA
chr2	199136509	199136510	chr2:199136510:G:A	rs4144848	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	199592838	199592839	chr2:199592839:A:G	rs4234081	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	199606677	199606678	chr2:199606678:T:C	rs6723090	T	C	T	Sox1.mouse_HMG_3	6	1	-	9.63303327280061	9.156517333145386	TCAATAACAGTGT
chr2	199955070	199955071	chr2:199955071:G:A	rs281764	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	199955088	199955089	chr2:199955089:T:C	rs281765	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.294359884235032	-0.5925496235654748	TCAAATCCATTAA
chr2	199967139	199967140	chr2:199967140:C:G	rs10497843	C	G	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	200192720	200192721	chr2:200192721:G:A	rs62181774	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	200239509	200239510	chr2:200239510:A:C	rs1035290526	A	C	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	200310520	200310521	chr2:200310521:C:T	rs295149	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	200339970	200339971	chr2:200339971:C:T	rs72918492	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	200454297	200454298	chr2:200454298:G:A	rs3769439	G	A	G	Sox1.mouse_HMG_3	11	1	+	8.190870432287435	4.081030001301536	TCAACTACATTGA
chr2	200667901	200667902	chr2:200667902:A:T	rs2715905	A	T	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	200901299	200901300	chr2:200901300:C:G	rs6435066	C	G	G	Sox1.mouse_HMG_3	1	1	+	8.429278633013848	1.5265258456545034	TCCATAGCATTGA
chr2	200945145	200945146	chr2:200945146:T:C	rs3963301	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	201573266	201573267	chr2:201573267:T:C	rs12693942	T	C	T	Sox1.mouse_HMG_3	5	1	-	3.410766981973477	2.1780942109063903	TCACTACCATAGG
chr2	201831299	201831300	chr2:201831300:G:A	rs6735557	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	202144818	202144819	chr2:202144819:A:G	rs2049190	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	202317316	202317317	chr2:202317317:G:A	rs12466003	G	A	G	Sox1.mouse_HMG_3	7	1	-	7.831355681079655	4.198888189984463	TCACTGGCATTAA
chr2	203283123	203283124	chr2:203283124:T:C	rs56324250	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	203574974	203574975	chr2:203574975:G:A	rs151087518	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	203574977	203574978	chr2:203574978:C:T	rs7594831	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	203808085	203808086	chr2:203808086:A:G	rs231821	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.428421940365935	-0.37260522155107245	TCAATAACAATGC
chr2	203849167	203849168	chr2:203849168:G:T	rs231811	G	T	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr2	203937044	203937045	chr2:203937045:T:C	rs10932029	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.328281750116485	-1.4727454118005192	TCAATGCCATCCA
chr2	204078967	204078968	chr2:204078968:G:A	rs78270258	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	204086544	204086545	chr2:204086545:G:A	rs961738	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	204108541	204108542	chr2:204108542:T:C	rs11899145	T	C	T	Sox1.mouse_HMG_3	0	1	-	4.6847302654157215	0.6583077196790799	ACAATCACAGTGA
chr2	204407794	204407795	chr2:204407795:G:T	rs73982233	G	T	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr2	204491599	204491600	chr2:204491600:T:A	rs13005161	T	A	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	205106888	205106889	chr2:205106889:G:A	rs13414808	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr2	205361513	205361514	chr2:205361514:A:G	rs1398054	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	205557415	205557416	chr2:205557416:T:C	rs12694027	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	205760541	205760542	chr2:205760542:C:G	rs870068	C	G	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	205855824	205855825	chr2:205855825:C:T	rs12991026	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	205869541	205869542	chr2:205869542:A:G	rs71427802	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.633725121504984	-2.1673020404120202	TCAATGTCATTTC
chr2	205949129	205949130	chr2:205949130:G:A	rs1017799138	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	205964632	205964633	chr2:205964633:G:C	rs6748181	G	C	G	Sox1.mouse_HMG_3	12	1	+	6.068356788209252	6.857107360714606	ACAATAATATTGG
chr2	206009582	206009583	chr2:206009583:T:C	rs144598064	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	206158418	206158419	chr2:206158419:G:C	rs10178430	G	C	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	207225491	207225492	chr2:207225492:C:A	rs118014708	C	A	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	208044274	208044275	chr2:208044275:T:A	rs6435404	T	A	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr2	208044457	208044458	chr2:208044458:T:C	rs6723557	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	208118813	208118814	chr2:208118814:T:A	rs6435414	T	A	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	208129972	208129973	chr2:208129973:C:T	rs2242071	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	208353284	208353285	chr2:208353285:A:G	rs34904313	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	210776874	210776875	chr2:210776875:T:G	rs2058925	T	G	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	210956036	210956037	chr2:210956037:A:T	rs319745	A	T	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr2	210956319	210956320	chr2:210956320:C:T	rs71422719	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	211437423	211437424	chr2:211437424:G:A	rs17803242	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr2	211720339	211720340	chr2:211720340:G:C	rs6435664	G	C	C	Sox1.mouse_HMG_3	1	1	-	6.644391249100723	-0.25836153825862396	ACAAAGGCATTGA
chr2	212005183	212005184	chr2:212005184:G:T	rs67361326	G	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	212119900	212119901	chr2:212119901:T:C	rs12465933	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	212136121	212136122	chr2:212136122:C:T	rs113499172	C	T	c	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	212193150	212193151	chr2:212193151:A:C	rs912554981	A	C	A	Sox1.mouse_HMG_3	10	1	-	5.230078172305809	-1.6700178493088382	TCATTGCCATTGC
chr2	212322653	212322654	chr2:212322654:T:C	rs7577906	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	212392288	212392289	chr2:212392289:C:T	rs114415760	C	T	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	212427094	212427095	chr2:212427095:G:A	rs10193290	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	212516914	212516915	chr2:212516915:T:C	rs7606241	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	212536829	212536830	chr2:212536830:T:C	rs148193432	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	212767029	212767030	chr2:212767030:G:C	rs7574914	G	C	G	Sox1.mouse_HMG_3	1	1	-	4.199517554478831	-2.7032352328805134	TCACTACCATAGC
chr2	212892531	212892532	chr2:212892532:C:T	rs10205723	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	213015551	213015552	chr2:213015552:A:G	rs996032	A	G	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	213045379	213045380	chr2:213045380:G:A	rs12622499	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	213175322	213175323	chr2:213175323:T:A	rs4673732	T	A	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	213981288	213981289	chr2:213981289:G:A	rs112543422	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr2	214091096	214091097	chr2:214091097:C:G	rs10187607	C	G	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	214130041	214130042	chr2:214130042:A:T	rs7576348	A	T	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr2	215062162	215062163	chr2:215062163:T:A	rs7586353	T	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	215291890	215291891	chr2:215291891:T:C	rs12463913	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	215291895	215291896	chr2:215291896:G:C	rs12475796	G	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	215398612	215398613	chr2:215398613:G:A	rs1525352	G	A	-	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	215398642	215398643	chr2:215398643:G:A	rs1525351	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	215430467	215430468	chr2:215430468:T:G	rs7574485	T	G	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr2	215430468	215430469	chr2:215430469:G:T	rs7560554	G	T	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	215439311	215439312	chr2:215439312:G:A	rs1250228	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	215462639	215462640	chr2:215462640:A:T	rs11678988	A	T	A	Sox1.mouse_HMG_3	5	1	+	8.349822172382634	7.626239274300426	TCAAGATCATTGA
chr2	215487531	215487532	chr2:215487532:A:T	rs11902239	A	T	t	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr2	215557876	215557877	chr2:215557877:A:G	rs16854316	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	215658477	215658478	chr2:215658478:C:G	rs13402978	C	G	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	215723865	215723866	chr2:215723866:G:A	rs12694369	G	A	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	215940849	215940850	chr2:215940850:T:C	rs12472599	T	C	t	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr2	216032415	216032416	chr2:216032416:T:C	rs7600247	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	216130867	216130868	chr2:216130868:T:C	rs1805382	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	216498084	216498085	chr2:216498085:A:G	rs284575	A	G	G	Sox1.mouse_HMG_3	0	1	-	3.4759346563966242	-3.37624448569666	TCACTTCCATGGC
chr2	216546522	216546523	chr2:216546523:T:C	rs922987	T	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr2	216717205	216717206	chr2:216717206:G:T	rs34825902	G	T	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	216792639	216792640	chr2:216792640:C:T	rs715051	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.631440427892477	5.717217289639178	TCCATTCCATTGC
chr2	216860750	216860751	chr2:216860751:C:G	rs1179733	C	G	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	217010207	217010208	chr2:217010208:T:C	rs13389571	T	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	217058881	217058882	chr2:217058882:G:T	rs17835044	G	T	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	217445016	217445017	chr2:217445017:T:G	rs4142171	T	G	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	217479323	217479324	chr2:217479324:C:T	rs561625934	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	217520698	217520699	chr2:217520699:T:C	rs16857758	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.566272753469329	-1.234754408447677	TCAATACCCTTGG
chr2	217646168	217646169	chr2:217646169:A:T	rs11903531	A	T	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	217750967	217750968	chr2:217750968:G:C	rs73072322	G	C	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	217849962	217849963	chr2:217849963:A:C	rs3791978	A	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	217933153	217933154	chr2:217933154:G:A	rs115963217	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	218066711	218066712	chr2:218066712:T:C	rs13421668	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	218298585	218298586	chr2:218298586:T:C	rs78757285	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	218317173	218317174	chr2:218317174:C:T	rs10932773	C	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	218322643	218322644	chr2:218322644:T:C	rs10203039	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	218358009	218358010	chr2:218358010:G:A	rs62182089	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	219033003	219033004	chr2:219033004:C:G	rs7572866	C	G	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	219309800	219309801	chr2:219309801:A:G	rs6436133	A	G	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	219428753	219428754	chr2:219428754:A:G	rs7576694	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	220154736	220154737	chr2:220154737:G:A	rs10932835	G	A	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr2	220224315	220224316	chr2:220224316:C:T	rs77042353	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr2	220333993	220333994	chr2:220333994:G:A	rs6737430	G	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	220733415	220733416	chr2:220733416:T:C	rs17675314	T	C	T	Sox1.mouse_HMG_3	3	1	-	12.027117392097223	5.226090230180219	TCAATTTCATTGC
chr2	221606795	221606796	chr2:221606796:A:G	rs2680837	A	G	G	Sox1.mouse_HMG_3	8	1	+	6.750288801173218	-0.15846597814200236	TCACTAACATAGA
chr2	221608955	221608956	chr2:221608956:G:C	rs2710520	G	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	222085957	222085958	chr2:222085958:G:A	rs348998	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	222256190	222256191	chr2:222256191:C:T	rs1430659	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr2	222302806	222302807	chr2:222302807:T:C	rs751576	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	222421809	222421810	chr2:222421810:C:A	rs1036469960	C	A	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	222421821	222421822	chr2:222421822:C:T	rs929806731	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	222878423	222878424	chr2:222878424:C:T	rs180877038	C	T	C	Sox1.mouse_HMG_3	7	1	+	6.559755287998719	2.9272877969035256	TTAATGTCATTGC
chr2	223076103	223076104	chr2:223076104:T:C	rs192648394	T	C	T	Sox1.mouse_HMG_3	9	1	-	6.7634753149873585	9.882309785675332	TCACTAACAATGA
chr2	223076801	223076802	chr2:223076802:G:A	rs77573952	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	223100791	223100792	chr2:223100792:C:A	rs79675182	C	A	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	223470763	223470764	chr2:223470764:A:G	rs111681120	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	223470782	223470783	chr2:223470783:C:T	rs719139	C	T	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	223688800	223688801	chr2:223688801:A:C	rs113884461	A	C	A	Sox1.mouse_HMG_3	10	1	-	5.949673128262427	-0.950422893352221	TCATTATCATTGC
chr2	223747630	223747631	chr2:223747631:T:C	rs649569	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	223747635	223747636	chr2:223747636:G:A	rs76924583	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	223776851	223776852	chr2:223776852:C:T	rs10498154	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.4141366374743285	0.7816691463791356	TCAATTACTGTGA
chr2	223858314	223858315	chr2:223858315:C:T	rs7599348	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	223858348	223858349	chr2:223858349:G:T	rs7599545	G	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	223861474	223861475	chr2:223861475:C:T	rs10432546	C	T	C	Sox1.mouse_HMG_3	9	1	-	4.946267134119459	1.8274326634314844	TCAAAACCAGTGT
chr2	224433855	224433856	chr2:224433856:G:A	rs1265559	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	224938465	224938466	chr2:224938466:T:C	rs62187990	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	224938469	224938470	chr2:224938470:C:A	rs62187991	C	A	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	225087177	225087178	chr2:225087178:C:T	rs4673130	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	225272431	225272432	chr2:225272432:A:T	rs60447174	A	T	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	225949185	225949186	chr2:225949186:T:C	rs1589153	T	C	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	226031797	226031798	chr2:226031798:C:T	rs80245318	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	226066845	226066846	chr2:226066846:C:T	rs16866803	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.285294416225534	-0.6729778148880914	TCACCACCATTGT
chr2	226116189	226116190	chr2:226116190:C:G	rs16866843	C	G	G	Sox1.mouse_HMG_3	6	1	-	5.212479823069666	5.637442419848352	TGAATTGCATTGC
chr2	226277321	226277322	chr2:226277322:C:T	rs2713542	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	226426551	226426552	chr2:226426552:T:C	rs13398640	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr2	226548506	226548507	chr2:226548507:C:T	rs1875336	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	226548946	226548947	chr2:226548947:G:T	rs56960665	G	T	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	226555036	226555037	chr2:226555037:T:C	rs60532138	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.285294416225533	-2.601615091574974	TCACTACCATAGT
chr2	226602186	226602187	chr2:226602187:C:A	rs545056695	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	226609713	226609714	chr2:226609714:G:T	rs1273810	G	T	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr2	226730633	226730634	chr2:226730634:G:A	rs73081602	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	226868768	226868769	chr2:226868769:C:T	rs16822814	C	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	227000159	227000160	chr2:227000160:A:G	rs10189579	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	227015794	227015795	chr2:227015795:C:T	rs12475134	C	T	T	Sox1.mouse_HMG_3	11	1	-	4.609272739797124	0.499432308811226	TCTATGTCATTGC
chr2	227084029	227084030	chr2:227084030:G:A	rs3923085	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	227308919	227308920	chr2:227308920:A:G	rs77964815	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	227326381	227326382	chr2:227326382:C:G	rs78904054	C	G	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	227370962	227370963	chr2:227370963:T:C	rs201095743	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.268339517231407	0.6331267214267935	TCAAGGACATTGT
chr2	227423670	227423671	chr2:227423671:A:G	rs75915553	A	G	G	Sox1.mouse_HMG_3	8	1	+	4.987666755973212	-1.921088023342009	ACATTTGCATTGA
chr2	227423671	227423672	chr2:227423672:T:C	rs74793456	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.987666755973212	-1.899242751827296	ACATTTGCATTGA
chr2	227463201	227463202	chr2:227463202:C:T	rs4673199	C	T	T	Sox1.mouse_HMG_3	9	1	-	5.142741829901935	2.0239073592139594	CCAATACCAGTGA
chr2	227821820	227821821	chr2:227821821:T:C	rs57318620	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.4259813940913535	-2.4609281137091537	TCATTCCCATTGA
chr2	227862891	227862892	chr2:227862892:C:G	rs931764443	C	G	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	227882159	227882160	chr2:227882160:T:G	rs4973006	T	G	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr2	227903440	227903441	chr2:227903441:T:G	rs1715834	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr2	228443929	228443930	chr2:228443930:G:A	rs2194551	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	228443937	228443938	chr2:228443938:G:C	rs58276054	G	C	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	228445370	228445371	chr2:228445371:C:G	rs60799555	C	G	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	228613870	228613871	chr2:228613871:T:A	rs2301	T	A	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	228848046	228848047	chr2:228848047:G:A	rs72983359	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr2	228875112	228875113	chr2:228875113:G:T	rs11893007	G	T	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	229390336	229390337	chr2:229390337:T:C	rs7579543	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr2	229421810	229421811	chr2:229421811:C:G	rs6719008	C	G	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	229481990	229481991	chr2:229481991:C:A	rs12476610	C	A	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	229688011	229688012	chr2:229688012:T:G	rs208788	T	G	G	Sox1.mouse_HMG_3	10	1	+	3.014761662933106	-3.885334358681541	CCACTGCCATTGC
chr2	229798379	229798380	chr2:229798380:T:C	rs115876606	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	229923193	229923194	chr2:229923194:T:C	rs186629035	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	230170822	230170823	chr2:230170823:C:T	rs140248145	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr2	230179147	230179148	chr2:230179148:T:G	rs967007	T	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr2	230377483	230377484	chr2:230377484:G:A	rs13012615	G	A	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	230445904	230445905	chr2:230445905:A:G	rs999888	A	G	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	230565668	230565669	chr2:230565669:A:G	rs7587870	A	G	.	Sox1.mouse_HMG_3	5	1	+	6.618561745720617	5.385888974653531	TCACTACCATTCT
chr2	230599991	230599992	chr2:230599992:G:T	rs74269035	G	T	G	Sox1.mouse_HMG_3	11	1	+	3.8205221672917706	-3.0637802303155888	TCCATGTCATTGG
chr2	230615702	230615703	chr2:230615703:T:C	rs10190300	T	C	t	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	230615707	230615708	chr2:230615708:A:G	rs545406821	A	G	a	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	230664202	230664203	chr2:230664203:C:T	rs138537309	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr2	230777921	230777922	chr2:230777922:T:C	rs147414467	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr2	230809767	230809768	chr2:230809768:T:C	rs113183067	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr2	230887591	230887592	chr2:230887592:C:G	rs59659158	C	G	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	230964792	230964793	chr2:230964793:C:T	rs2089662	C	T	-	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	231187021	231187022	chr2:231187022:A:T	rs55820201	A	T	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	231227587	231227588	chr2:231227588:C:T	rs16827879	C	T	T	Sox1.mouse_HMG_3	1	1	+	2.958186025711171	-2.0000862054024555	TCCCTGCCATTGC
chr2	231238040	231238041	chr2:231238041:G:A	rs7569597	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.19554364699418	0.5586810142735985	TCACAACCAGTGA
chr2	231356901	231356902	chr2:231356902:C:T	rs61485321	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	231546564	231546565	chr2:231546565:A:G	rs988609665	A	G	A	Sox1.mouse_HMG_3	4	1	-	6.187765593710642	-0.712330427904005	ACATTAACATTGA
chr2	231681774	231681775	chr2:231681775:T:C	rs11894219	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	231932439	231932440	chr2:231932440:C:T	rs12464230	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr2	232260744	232260745	chr2:232260745:G:A	rs12622345	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.221773738697339	0.2635015075837128	TCAATACTCTTGA
chr2	232343266	232343267	chr2:232343267:C:G	rs1125045	C	G	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	232695592	232695593	chr2:232695593:A:T	rs62193269	A	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	232745271	232745272	chr2:232745272:C:G	rs11892326	C	G	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr2	232796135	232796136	chr2:232796136:G:A	rs2305138	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr2	232899542	232899543	chr2:232899543:T:C	rs7575584	T	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	232900168	232900169	chr2:232900169:C:T	rs111163656	C	T	-	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	233011827	233011828	chr2:233011828:T:C	rs77562385	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr2	233080854	233080855	chr2:233080855:C:T	rs7425956	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	233080863	233080864	chr2:233080864:A:T	rs566440666	A	T	A	Sox1.mouse_HMG_3	9	1	-	4.144131199262436	-2.742778308538073	TCAATCACATCGC
chr2	233139304	233139305	chr2:233139305:T:C	rs886975487	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.240035786024507	1.3312810067092855	TCACATCCATTGA
chr2	233297793	233297794	chr2:233297794:T:C	rs73998351	T	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr2	233675199	233675200	chr2:233675200:G:A	rs12615708	G	A	g	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	233801649	233801650	chr2:233801650:A:G	rs28899491	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.626484854046442	-1.260424653754067	TCAATAACATAGG
chr2	234026507	234026508	chr2:234026508:G:A	rs17864789	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	234331861	234331862	chr2:234331862:A:C	rs62186806	A	C	A	Sox1.mouse_HMG_3	5	1	-	5.314099964375206	4.805010091390326	TCAATTGCAATGT
chr2	234447036	234447037	chr2:234447037:A:G	rs62184397	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.934745579411921	0.025990800096699518	TCAAAAGCAGTGA
chr2	234609895	234609896	chr2:234609896:C:A	rs2386505	C	A	-	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr2	234636085	234636086	chr2:234636086:G:A	rs147480329	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	234988417	234988418	chr2:234988418:A:C	rs10176321	A	C	A	Sox1.mouse_HMG_3	7	1	+	4.660566895884555	9.951068081232584	TCACTTGAATTGC
chr2	235144713	235144714	chr2:235144714:A:G	rs6742844	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	235170040	235170041	chr2:235170041:A:T	rs72981340	A	T	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	235170340	235170341	chr2:235170341:G:A	rs114683799	G	A	G	Sox1.mouse_HMG_3	7	1	-	4.333599982402241	0.7011324913070482	TCAATGCCCTTGG
chr2	235170358	235170359	chr2:235170359:C:G	rs4274553	C	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	235170617	235170618	chr2:235170618:G:A	rs4311020	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr2	235615208	235615209	chr2:235615209:C:T	rs142316598	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	235674381	235674382	chr2:235674382:G:T	rs12466302	G	T	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr2	235810657	235810658	chr2:235810658:A:G	rs12616076	A	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr2	235826951	235826952	chr2:235826952:G:A	rs554811255	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr2	235827708	235827709	chr2:235827709:A:T	rs62190882	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr2	235827709	235827710	chr2:235827710:C:T	rs12472411	C	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr2	235918724	235918725	chr2:235918725:G:A	rs11690665	G	A	G	Sox1.mouse_HMG_3	7	1	-	6.042499527098299	2.410032036003105	TCACTTACATTTA
chr2	236538240	236538241	chr2:236538241:T:G	rs13412209	T	G	G	Sox1.mouse_HMG_3	5	1	-	5.162171917264397	0.626184464165005	TCAATAACAGTTA
chr2	236587546	236587547	chr2:236587547:C:T	rs12692190	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr2	236592829	236592830	chr2:236592830:G:A	rs573537832	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	236694153	236694154	chr2:236694154:C:A	rs2600775	C	A	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	236694708	236694709	chr2:236694709:T:C	rs2720136	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	236715727	236715728	chr2:236715728:G:A	chr2:236715728:G:A	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr2	236744895	236744896	chr2:236744896:A:G	rs12328841	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	236744909	236744910	chr2:236744910:C:T	rs13399858	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.637442419848352	1.527601988862453	TAAATTCCATTGC
chr2	236773965	236773966	chr2:236773966:A:G	rs72975172	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.061853696059433	-1.8469010832557886	TCAATATCATGGG
chr2	236833628	236833629	chr2:236833629:A:C	rs146693707	A	C	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr2	236861798	236861799	chr2:236861799:T:C	rs7578264	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	236915867	236915868	chr2:236915868:A:G	rs11686606	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr2	236941291	236941292	chr2:236941292:T:G	rs531666881	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr2	236941294	236941295	chr2:236941295:G:A	rs548293008	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr2	236942736	236942737	chr2:236942737:G:A	rs893417	G	A	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr2	236944674	236944675	chr2:236944675:G:A	rs58491621	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.9443261144185495	0.8344856834326508	TCTCTGTCATTGA
chr2	236944975	236944976	chr2:236944976:T:C	rs7574266	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	237144686	237144687	chr2:237144687:G:A	rs72975882	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr2	237304953	237304954	chr2:237304954:T:C	rs1391108	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr2	237304968	237304969	chr2:237304969:C:T	rs190413659	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.313560493054256	1.2037200620683572	ACAATTCCATAGA
chr2	237452445	237452446	chr2:237452446:C:T	rs7584314	C	T	C	Sox1.mouse_HMG_3	4	1	-	5.041100090450907	7.30598331626094	TCACGGGCATTGA
chr2	237452457	237452458	chr2:237452458:G:A	rs75011835	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr2	237480148	237480149	chr2:237480149:G:A	rs13390494	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	237488319	237488320	chr2:237488320:T:C	rs880932	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr2	237488341	237488342	chr2:237488342:C:T	rs72620830	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr2	237488342	237488343	chr2:237488343:C:T	rs116186581	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr2	237498322	237498323	chr2:237498323:T:C	rs57319024	T	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr2	237623790	237623791	chr2:237623791:G:T	rs34512451	G	T	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr2	237648149	237648150	chr2:237648150:A:G	rs28635012	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.867142237094981	-1.933884924822023	TCAATTCCATTTG
chr2	237770231	237770232	chr2:237770232:A:G	rs6719679	A	G	G	Sox1.mouse_HMG_3	9	1	-	5.640099185593048	-1.2468103222074596	TCAATTCCATGGC
chr2	237858717	237858718	chr2:237858718:T:A	rs554166556	T	A	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	237858718	237858719	chr2:237858719:A:T	rs577211661	A	T	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr2	237903521	237903522	chr2:237903522:A:C	rs4663805	A	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr2	237996149	237996150	chr2:237996150:G:A	rs10469607	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr2	238213091	238213092	chr2:238213092:T:C	rs4663863	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr2	238727676	238727677	chr2:238727677:G:C	rs537889764	G	C	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr2	238732485	238732486	chr2:238732486:A:G	rs4663953	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	238943439	238943440	chr2:238943440:T:C	rs4353673	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr2	238995895	238995896	chr2:238995896:C:T	rs79329139	C	T	c	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr2	239179914	239179915	chr2:239179915:T:C	rs551326	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr2	239455302	239455303	chr2:239455303:A:C	rs567272355	A	C	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	239455308	239455309	chr2:239455309:A:C	rs35416677	A	C	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr2	239543000	239543001	chr2:239543001:T:C	rs2068084	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr2	239757864	239757865	chr2:239757865:C:T	rs74218169	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr2	239811056	239811057	chr2:239811057:A:G	rs62183198	A	G	A	Sox1.mouse_HMG_3	12	1	+	7.646020840433303	4.358052364110101	TCAATGCCATTTA
chr2	239938249	239938250	chr2:239938250:T:C	rs10172732	T	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	239938252	239938253	chr2:239938253:A:C	rs10178362	A	C	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr2	239938290	239938291	chr2:239938291:T:G	rs6752251	T	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr2	240111402	240111403	chr2:240111403:G:T	rs1035516467	G	T	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr2	240525348	240525349	chr2:240525349:G:T	rs4384788	G	T	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr2	240584794	240584795	chr2:240584795:T:C	rs371256016	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	240584842	240584843	chr2:240584843:T:C	rs73108040	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr2	240813494	240813495	chr2:240813495:G:A	rs77835327	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr2	240972598	240972599	chr2:240972599:T:C	rs11898539	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.508957272405556	-1.3432218696877274	TCTCTGACATTGA
chr2	241028027	241028028	chr2:241028028:G:A	rs57575374	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr2	241279592	241279593	chr2:241279593:C:T	rs116418494	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr2	241505756	241505757	chr2:241505757:C:T	rs138154504	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr2	241896378	241896379	chr2:241896379:A:C	rs77365138	A	C	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr2	241896390	241896391	chr2:241896391:A:C	rs7606520	A	C	.	Sox1.mouse_HMG_3	9	1	-	5.457403929529018	1.6893288924164855	TCACTGCCCTTGA
chr2	241896400	241896401	chr2:241896401:T:C	rs7600158	T	C	.	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr2	241942763	241942764	chr2:241942764:C:T	rs6422701	C	T	.	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr2	242018793	242018794	chr2:242018794:A:G	rs7422022	A	G	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr2	242037348	242037349	chr2:242037349:C:T	rs111884257	C	T	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr2	242037376	242037377	chr2:242037377:T:C	rs12477174	T	C	.	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr20	291552	291553	chr20:291553:G:A	rs73572454	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr20	302890	302891	chr20:302891:A:G	rs2143528	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	461666	461667	chr20:461667:T:C	rs573527183	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr20	852009	852010	chr20:852010:G:T	rs4816022	G	T	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	882409	882410	chr20:882410:A:G	rs59538275	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr20	907031	907032	chr20:907032:C:T	rs742922	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr20	908673	908674	chr20:908674:C:G	rs13040505	C	G	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr20	917574	917575	chr20:917575:T:C	rs540995	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	945198	945199	chr20:945199:C:G	rs117867490	C	G	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	1021161	1021162	chr20:1021162:C:T	rs4816143	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr20	1122765	1122766	chr20:1122766:G:A	chr20:1122766:G:A	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr20	1124737	1124738	chr20:1124738:G:C	rs6133961	G	C	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr20	1212061	1212062	chr20:1212062:T:C	rs73073619	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr20	1247724	1247725	chr20:1247725:C:T	rs9653633	C	T	C	Sox1.mouse_HMG_3	11	1	-	7.626239274300426	3.5163988433145272	TCAATTTCATAGA
chr20	1382389	1382390	chr20:1382390:G:C	rs7274574	G	C	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	1845191	1845192	chr20:1845192:A:G	rs73584704	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr20	1933152	1933153	chr20:1933153:A:C	rs11087259	A	C	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	2045229	2045230	chr20:2045230:A:T	rs1418046	A	T	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	2108051	2108052	chr20:2108052:A:G	rs6137005	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr20	2181024	2181025	chr20:2181025:T:A	rs4813409	T	A	T	Sox1.mouse_HMG_3	8	1	-	10.37603067801127	3.4672758986960504	TCACTTCCATTGC
chr20	2181031	2181032	chr20:2181032:G:A	rs4813410	G	A	G	Sox1.mouse_HMG_3	1	1	-	10.37603067801127	5.417758446897645	TCACTTCCATTGC
chr20	2185780	2185781	chr20:2185781:T:C	rs6082335	T	C	C	Sox1.mouse_HMG_3	9	1	+	4.2950341585723155	-2.5918753492281916	TCAAAAACATTTA
chr20	2229883	2229884	chr20:2229884:A:C	rs6082461	A	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	2364138	2364139	chr20:2364139:T:G	rs6132554	T	G	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr20	2364142	2364143	chr20:2364143:A:C	rs4815161	A	C	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr20	2364163	2364164	chr20:2364164:G:A	rs2325841	G	A	A	Sox1.mouse_HMG_3	3	1	-	5.0568937144581945	0.4200310817376143	TCACTGGCATTTA
chr20	2392979	2392980	chr20:2392980:C:G	rs73071385	C	G	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr20	2393517	2393518	chr20:2393518:T:A	rs2092379	T	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr20	2406933	2406934	chr20:2406934:G:A	rs75376438	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	2421501	2421502	chr20:2421502:G:A	rs11700354	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr20	2533483	2533484	chr20:2533484:G:A	rs6036852	G	A	A	Sox1.mouse_HMG_3	1	1	-	5.772327075375063	0.8140548442614375	ACACTGCCAGTGA
chr20	2533911	2533912	chr20:2533912:G:A	rs6076243	G	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr20	2658905	2658906	chr20:2658906:G:A	rs367817356	G	A	G	Sox1.mouse_HMG_3	7	1	-	8.779343995067048	5.146876503971857	TCAATCACATTGC
chr20	2658923	2658924	chr20:2658924:G:T	rs6037255	G	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	2771693	2771694	chr20:2771694:G:A	rs6084164	G	A	G	Sox1.mouse_HMG_3	7	1	-	2.555068700447198	-1.077398790647995	TCACTGGCACTGC
chr20	2832173	2832174	chr20:2832174:A:G	rs6051421	A	G	a	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	2893782	2893783	chr20:2893783:C:T	rs6138930	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr20	3015850	3015851	chr20:3015851:C:T	rs1178016	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr20	3226250	3226251	chr20:3226251:T:G	rs74827033	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	3603336	3603337	chr20:3603337:G:T	rs79829468	G	T	G	Sox1.mouse_HMG_3	6	1	-	5.631440427892475	5.682993770769013	TCAATTCCTTTGC
chr20	3996677	3996678	chr20:3996678:T:C	rs73086581	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.001970815661874	-1.9067839636533466	TCAGTTACATTGG
chr20	4057075	4057076	chr20:4057076:G:A	rs1891427	G	A	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr20	4130671	4130672	chr20:4130672:C:T	rs34025044	C	T	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr20	4198221	4198222	chr20:4198222:C:A	rs1238882	C	A	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr20	4207534	4207535	chr20:4207535:T:C	rs7264727	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr20	4445749	4445750	chr20:4445750:G:A	rs569598978	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr20	4466090	4466091	chr20:4466091:A:G	rs55828029	A	G	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr20	4554435	4554436	chr20:4554436:G:T	rs115489289	G	T	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	4684049	4684050	chr20:4684050:G:A	rs746981299	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr20	4766619	4766620	chr20:4766620:C:T	rs2326511	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr20	4766637	4766638	chr20:4766638:C:T	rs11697426	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr20	4788530	4788531	chr20:4788531:G:C	rs6139553	G	C	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr20	4791399	4791400	chr20:4791400:T:C	rs6052879	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr20	5127570	5127571	chr20:5127571:G:A	rs74894064	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr20	5357976	5357977	chr20:5357977:A:G	rs35963343	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr20	5357989	5357990	chr20:5357990:T:C	rs4815797	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr20	5660003	5660004	chr20:5660004:C:T	rs111437761	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr20	5703559	5703560	chr20:5703560:A:G	rs805747	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	5787165	5787166	chr20:5787166:G:A	rs6053692	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr20	5804036	5804037	chr20:5804037:G:A	rs4813780	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr20	5832241	5832242	chr20:5832242:C:T	rs6139850	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr20	5832253	5832254	chr20:5832254:A:T	rs237083	A	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	6064676	6064677	chr20:6064677:T:C	rs2326713	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	6077493	6077494	chr20:6077494:C:G	rs113141465	C	G	C	Sox1.mouse_HMG_3	6	1	+	8.765408150843221	8.340445554064535	TCACTTCCATTAA
chr20	6077505	6077506	chr20:6077506:T:C	rs150191129	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr20	6265157	6265158	chr20:6265158:A:C	rs6117185	A	C	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	6446870	6446871	chr20:6446871:C:T	rs6054255	C	T	C	Sox1.mouse_HMG_3	3	1	+	9.8629528629008	5.226090230180219	TCACTTTCATTGC
chr20	6714678	6714679	chr20:6714679:G:T	chr20:6714679:G:T	G	T	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr20	7195708	7195709	chr20:7195709:A:G	rs16993133	A	G	G	Sox1.mouse_HMG_3	0	1	+	7.137737949564457	3.1113154038278155	ACAATGCCATTCA
chr20	7463416	7463417	chr20:7463417:C:A	rs2326929	C	A	c	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr20	7477632	7477633	chr20:7477633:A:T	rs6086059	A	T	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr20	7586224	7586225	chr20:7586225:C:T	rs6117863	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr20	7691337	7691338	chr20:7691338:C:T	rs6038921	C	T	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	7766290	7766291	chr20:7766291:G:A	rs73593977	G	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr20	7888808	7888809	chr20:7888809:T:C	rs2294305	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.152503603225037	1.2437488239098162	TCAATTCCACTGA
chr20	7923930	7923931	chr20:7923931:C:T	rs2247673	C	T	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr20	8020824	8020825	chr20:8020825:T:C	rs6055463	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.08820208375813	0.2871749218411248	TTAATAACAGTGA
chr20	8020847	8020848	chr20:8020848:A:G	rs184099864	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.029476658424998	-2.879278120890221	TCAATTCCATAAA
chr20	8067208	8067209	chr20:8067209:C:T	rs6140519	C	T	c	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr20	8073904	8073905	chr20:8073905:C:T	rs6140524	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr20	8096147	8096148	chr20:8096148:A:G	rs6055528	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr20	8304460	8304461	chr20:8304461:T:C	rs2719804	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr20	8528219	8528220	chr20:8528220:A:G	rs114109931	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr20	8528221	8528222	chr20:8528222:G:A	rs722663	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	8569889	8569890	chr20:8569890:G:A	rs6086505	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	8602731	8602732	chr20:8602732:G:T	rs542686766	G	T	G	Sox1.mouse_HMG_3	11	1	+	6.364619185675924	-0.5196832119314361	TTAATTACAGTGA
chr20	8646436	8646437	chr20:8646437:C:A	rs138904904	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	8750127	8750128	chr20:8750128:A:G	rs17446965	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr20	8751753	8751754	chr20:8751754:T:C	rs6056062	T	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr20	8858621	8858622	chr20:8858622:A:G	rs17380559	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.988339074028612	-0.9204157052866084	TCACTTCCACTGA
chr20	8946085	8946086	chr20:8946086:A:G	rs6118394	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr20	9375848	9375849	chr20:9375849:A:G	rs2299675	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr20	9617314	9617315	chr20:9617315:C:T	rs1030493561	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr20	9887886	9887887	chr20:9887887:T:C	rs6056972	T	C	T	Sox1.mouse_HMG_3	3	1	-	10.929572680039644	4.128545518122641	TCAATTCCATTAA
chr20	9912900	9912901	chr20:9912901:C:A	rs75977837	C	A	C	Sox1.mouse_HMG_3	7	1	+	5.83682335412669	0.546322168778659	TCAAAGACATTAA
chr20	9985567	9985568	chr20:9985568:A:C	rs55641365	A	C	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr20	10115160	10115161	chr20:10115161:T:C	chr20:10115161:T:C	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.042499527098299	-0.8662552522169222	TCACTTACATTTA
chr20	10430953	10430954	chr20:10430954:T:C	rs6077786	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr20	10659339	10659340	chr20:10659340:T:C	rs3790160	T	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr20	10853749	10853750	chr20:10853750:T:C	rs6040200	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	11186882	11186883	chr20:11186883:C:G	rs6134156	C	G	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr20	11234115	11234116	chr20:11234116:C:A	rs62191768	C	A	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	11247372	11247373	chr20:11247373:C:T	rs4435520	C	T	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr20	11432501	11432502	chr20:11432502:G:A	rs6078176	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	11744279	11744280	chr20:11744280:C:A	rs2026761	C	A	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr20	11794730	11794731	chr20:11794731:G:A	rs6033228	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr20	11814490	11814491	chr20:11814491:C:T	chr20:11814491:C:T	C	T	C	Sox1.mouse_HMG_3	11	1	-	3.0423133019173663	-1.067527129068532	TCTCTTGCATTGC
chr20	11873729	11873730	chr20:11873730:A:G	rs2144352	A	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr20	11929661	11929662	chr20:11929662:T:C	rs1883791	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr20	12012444	12012445	chr20:12012445:G:A	rs1158499840	G	A	G	Sox1.mouse_HMG_3	11	1	+	11.75144463470234	7.641604203716442	TCAATTCCATTGG
chr20	12093565	12093566	chr20:12093566:A:G	rs6041087	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	12408663	12408664	chr20:12408664:A:C	rs6134540	A	C	A	Sox1.mouse_HMG_3	0	1	-	8.81696149371976	1.964782351626475	TCACTTACATTAA
chr20	12574116	12574117	chr20:12574117:A:G	rs6078684	A	G	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr20	12710223	12710224	chr20:12710224:A:G	rs8122873	A	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr20	12929426	12929427	chr20:12929427:G:A	rs62201676	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	12929593	12929594	chr20:12929594:C:A	rs165555	C	A	C	Sox1.mouse_HMG_3	1	1	+	4.190858796778258	-2.7118939905810855	TCCCTACCATTGC
chr20	13273701	13273702	chr20:13273702:G:A	rs80147809	G	A	G	Sox1.mouse_HMG_3	1	1	-	4.395541517771441	-0.5627307133421842	CCAATAACATTCA
chr20	13337055	13337056	chr20:13337056:T:A	rs1321293	T	A	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr20	13338331	13338332	chr20:13338332:T:A	rs78536487	T	A	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr20	13356348	13356349	chr20:13356349:C:A	rs1321294	C	A	A	Sox1.mouse_HMG_3	11	1	-	3.009739368587708	-3.8745630290196513	TCCCTGACATTGC
chr20	13356366	13356367	chr20:13356367:A:C	rs1321295	A	C	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr20	13545929	13545930	chr20:13545930:A:G	rs6079097	A	G	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr20	13581676	13581677	chr20:13581677:C:A	rs112723315	C	A	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr20	13800992	13800993	chr20:13800993:G:A	rs73081461	G	A	a	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr20	13801003	13801004	chr20:13801004:A:G	rs117204883	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr20	13801010	13801011	chr20:13801011:C:A	rs117073022	C	A	C	Sox1.mouse_HMG_3	1	1	+	3.489121170210763	-3.4136316171485803	TCACTTCCACTGC
chr20	14204175	14204176	chr20:14204176:G:A	rs6079351	G	A	g	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr20	14267810	14267811	chr20:14267811:T:C	rs6105236	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr20	14337233	14337234	chr20:14337234:G:C	rs204607	G	C	C	Sox1.mouse_HMG_3	7	1	-	3.68643973936836	-3.193296651096251	TCACTATCATGGC
chr20	14623062	14623063	chr20:14623063:A:T	rs76283981	A	T	a	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr20	14644573	14644574	chr20:14644574:A:G	rs56143931	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr20	14693191	14693192	chr20:14693192:G:T	rs1932953	G	T	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr20	14764968	14764969	chr20:14764969:G:A	rs78019035	G	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr20	14841580	14841581	chr20:14841581:G:A	rs426045	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	14956281	14956282	chr20:14956282:C:A	rs80175098	C	A	c	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	14956288	14956289	chr20:14956289:G:A	rs2423873	G	A	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	14989766	14989767	chr20:14989767:G:A	rs191617	G	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	15047387	15047388	chr20:15047388:G:A	rs373399	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr20	15251637	15251638	chr20:15251638:T:C	rs73262743	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr20	15328372	15328373	chr20:15328373:C:T	rs6135389	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	15539437	15539438	chr20:15539438:T:C	rs6043350	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.863790782378926	-0.9372363795380807	TCAATATCACTGC
chr20	15882938	15882939	chr20:15882939:A:G	rs6043594	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr20	16023674	16023675	chr20:16023675:G:A	rs708980	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr20	16052654	16052655	chr20:16052655:G:A	rs73092737	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr20	16065033	16065034	chr20:16065034:A:G	rs775122	A	G	G	Sox1.mouse_HMG_3	0	1	-	8.359883637439836	1.5077044953465502	TCACTAAAATTGA
chr20	16205732	16205733	chr20:16205733:G:A	rs4814454	G	A	A	Sox1.mouse_HMG_3	6	1	-	3.5238515359179874	3.0107737208075167	GCACTTCCATTGC
chr20	16432993	16432994	chr20:16432994:T:C	rs61664184	T	C	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr20	16761199	16761200	chr20:16761200:A:G	rs78172674	A	G	A	Sox1.mouse_HMG_3	0	1	+	6.712775352785773	2.6863528070491314	ACAATGGCATTCA
chr20	16761683	16761684	chr20:16761684:C:T	rs4814554	C	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr20	16948098	16948099	chr20:16948099:G:A	rs56406352	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	17327301	17327302	chr20:17327302:A:G	rs75509733	A	G	A	Sox1.mouse_HMG_3	6	1	+	4.2125153029474856	3.735999363292262	TCAATCACATTCC
chr20	17339411	17339412	chr20:17339412:T:C	rs6075193	T	C	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	17371375	17371376	chr20:17371376:A:G	rs62201010	A	G	a	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	17403864	17403865	chr20:17403865:A:G	rs186555636	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr20	17465634	17465635	chr20:17465635:C:G	rs74999417	C	G	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr20	17545058	17545059	chr20:17545059:G:A	rs75225013	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr20	17747393	17747394	chr20:17747394:G:A	rs150319648	G	A	G	Sox1.mouse_HMG_3	12	1	-	3.4672758986960504	3.553052760442753	TCACTTCCTTTGC
chr20	17807562	17807563	chr20:17807563:G:C	chr20:17807563:G:C	G	C	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr20	17826541	17826542	chr20:17826542:C:T	rs73254212	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr20	17850370	17850371	chr20:17850371:C:T	rs79517174	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr20	17850399	17850400	chr20:17850400:C:T	chr20:17850400:C:T	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	17850414	17850415	chr20:17850415:C:T	rs2618595	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr20	17889052	17889053	chr20:17889053:C:T	rs370203811	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr20	17932641	17932642	chr20:17932642:T:C	rs6045109	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr20	17972573	17972574	chr20:17972574:C:T	rs876827	C	T	C	Sox1.mouse_HMG_3	3	1	+	5.753112431914902	1.1162497991943212	TCACTTTCATTAC
chr20	18059664	18059665	chr20:18059665:A:G	rs61744787	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr20	18439459	18439460	chr20:18439460:T:C	rs916825578	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.5584029411922415	-2.3285065666082656	TCAATTATATAGA
chr20	18625672	18625673	chr20:18625673:A:G	rs73112658	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.643413730240157	0.8423865683231504	TCAATGCCACTGA
chr20	18639787	18639788	chr20:18639788:T:C	rs143821211	T	C	G	Sox1.mouse_HMG_3	9	1	+	5.2041394745287075	-1.6827700332718007	TCAATTTCTTTGT
chr20	18639804	18639805	chr20:18639805:G:A	rs6045530	G	A	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr20	18740191	18740192	chr20:18740192:A:C	rs142518897	A	C	A	Sox1.mouse_HMG_3	5	1	+	4.32809695972852	-0.20789049337087118	TCAATAGCATAAA
chr20	18902197	18902198	chr20:18902198:C:A	rs979864	C	A	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr20	18902228	18902229	chr20:18902229:G:A	rs182650297	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	19450372	19450373	chr20:19450373:C:T	rs6035340	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	19524972	19524973	chr20:19524973:G:A	rs761219	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr20	19673809	19673810	chr20:19673810:A:G	rs1406971	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	19714466	19714467	chr20:19714467:A:T	rs144460181	A	T	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	19779060	19779061	chr20:19779061:A:G	rs1980588	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr20	19808777	19808778	chr20:19808778:T:G	rs6035443	T	G	G	Sox1.mouse_HMG_3	9	1	-	3.7877414715142863	3.7877414715142863	TCACTAGCAATGC
chr20	19902347	19902348	chr20:19902348:C:T	rs11699737	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr20	19918323	19918324	chr20:19918324:C:T	rs371321066	C	T	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr20	19942355	19942356	chr20:19942356:T:G	rs6112671	T	G	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr20	19974614	19974615	chr20:19974615:C:T	rs143019473	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr20	19981327	19981328	chr20:19981328:A:G	rs199594	A	G	A	Sox1.mouse_HMG_3	10	1	-	7.932503662445898	3.297290866641284	ACAATTTCAGTGA
chr20	19981346	19981347	chr20:19981347:C:T	rs199595	C	T	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	19984996	19984997	chr20:19984997:T:C	rs6046513	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr20	20078263	20078264	chr20:20078264:C:A	rs11906004	C	A	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr20	20307300	20307301	chr20:20307301:A:G	rs115367881	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.755658509784263	-1.1530962695309577	TTAATCTCATTGA
chr20	20395928	20395929	chr20:20395929:G:T	rs117761093	G	T	G	Sox1.mouse_HMG_3	5	1	+	4.7033899500847856	5.212479823069666	TGAATGGCATTGC
chr20	21144025	21144026	chr20:21144026:G:C	rs1884762	G	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr20	21290542	21290543	chr20:21290543:C:A	rs140894989	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	22373386	22373387	chr20:22373387:C:A	rs147263596	C	A	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	22486390	22486391	chr20:22486391:T:A	rs8117208	T	A	A	Sox1.mouse_HMG_3	8	1	-	7.674156153821789	0.7654013745065689	GCAATTTCATTGA
chr20	22563007	22563008	chr20:22563008:T:C	rs1203883	T	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr20	22743628	22743629	chr20:22743629:A:G	rs73900551	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr20	22925111	22925112	chr20:22925112:A:G	rs1411789	A	G	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr20	23028806	23028807	chr20:23028807:G:A	rs220990	G	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	23049377	23049378	chr20:23049378:C:T	rs1800576	C	T	c	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	23120181	23120182	chr20:23120182:G:A	rs73905211	G	A	g	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr20	23241836	23241837	chr20:23241837:C:T	rs1416399	C	T	C	Sox1.mouse_HMG_3	7	1	+	2.95818602571117	-0.6742814653840228	TCACTGCCCTTGC
chr20	23397460	23397461	chr20:23397461:A:G	rs2249943	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.597112064686117	-2.2039150972308876	TCAATACCAGTAG
chr20	23397463	23397464	chr20:23397464:C:A	rs2281434	C	A	C	Sox1.mouse_HMG_3	6	1	+	4.597112064686117	4.648665407562655	TCAATACCAGTAG
chr20	23422097	23422098	chr20:23422098:A:G	rs761725	A	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr20	23442121	23442122	chr20:23442122:G:C	rs73901870	G	C	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr20	23442157	23442158	chr20:23442158:C:T	chr20:23442158:C:T	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr20	23442166	23442167	chr20:23442167:C:T	rs147999788	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr20	23452172	23452173	chr20:23452173:A:G	rs6114092	A	G	g	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	23461447	23461448	chr20:23461448:G:A	rs12625999	G	A	g	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	23508559	23508560	chr20:23508560:T:C	rs2983303	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr20	23601385	23601386	chr20:23601386:G:A	rs2983636	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr20	23636143	23636144	chr20:23636144:C:T	rs3787498	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.294768989699401	4.78169117458893	TCACTCCCAGTGA
chr20	23636169	23636170	chr20:23636170:G:A	rs3787499	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr20	23719781	23719782	chr20:23719782:C:T	rs6083232	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr20	23758866	23758867	chr20:23758867:C:T	rs6083252	C	T	T	Sox1.mouse_HMG_3	11	1	-	5.001970815661874	0.8921303846759754	TCATTTACATTGG
chr20	23920245	23920246	chr20:23920246:T:C	rs73905806	T	C	T	Sox1.mouse_HMG_3	8	1	-	7.510486861772364	0.6017320824571437	TCAATCACAGTGA
chr20	23937816	23937817	chr20:23937817:T:A	rs2258909	T	A	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr20	24011529	24011530	chr20:24011530:A:G	rs147318566	A	G	a	Sox1.mouse_HMG_3	9	1	-	5.777429390216287	-1.109480117584219	TCAATTACATAGT
chr20	24049094	24049095	chr20:24049095:T:G	rs59581206	T	G	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr20	24198892	24198893	chr20:24198893:G:A	rs76264801	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr20	24212084	24212085	chr20:24212085:T:C	rs482337	T	C	c	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr20	24212101	24212102	chr20:24212102:T:C	rs504500	T	C	t	Sox1.mouse_HMG_3	2	1	-	6.252575915478763	-0.6561788638364554	TCACTAACATTAG
chr20	24518084	24518085	chr20:24518085:C:A	rs6049752	C	A	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr20	24608823	24608824	chr20:24608824:A:C	chr20:24608824:A:C	A	C	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	24670881	24670882	chr20:24670882:T:C	rs35954840	T	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	24696343	24696344	chr20:24696344:G:A	rs112270330	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	24727486	24727487	chr20:24727487:T:C	rs565041722	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr20	24767966	24767967	chr20:24767967:C:A	rs73333468	C	A	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr20	24896386	24896387	chr20:24896387:C:T	rs6036963	C	T	C	Sox1.mouse_HMG_3	10	1	+	6.1359919244048875	10.771204720209502	TCAATAGCATCCA
chr20	24995165	24995166	chr20:24995166:C:G	rs55917150	C	G	C	Sox1.mouse_HMG_3	6	1	+	4.952067309701304	4.527104712922618	TCACTTCCATCGG
chr20	25000417	25000418	chr20:25000418:G:A	rs2387573	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr20	25030786	25030787	chr20:25030787:T:C	rs6050259	T	C	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr20	25052502	25052503	chr20:25052503:T:C	rs73906068	T	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr20	25127746	25127747	chr20:25127747:A:G	rs4815375	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr20	25211669	25211670	chr20:25211670:C:T	rs67459375	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	25223500	25223501	chr20:25223501:T:A	rs59082275	T	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr20	25238033	25238034	chr20:25238034:G:A	rs115761750	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr20	25258671	25258672	chr20:25258672:G:C	rs779703081	G	C	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	25286086	25286087	chr20:25286087:C:T	rs67184896	C	T	.	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr20	25309020	25309021	chr20:25309021:T:A	rs77358848	T	A	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	25355050	25355051	chr20:25355051:A:G	rs6037095	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr20	25369586	25369587	chr20:25369587:A:G	rs4815411	A	G	a	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr20	25484611	25484612	chr20:25484612:G:A	rs372678	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr20	25567130	25567131	chr20:25567131:A:G	rs6132845	A	G	A	Sox1.mouse_HMG_3	3	1	+	6.028484633435889	-0.7725425284811169	ACAATACCTTTGA
chr20	28558047	28558048	chr20:28558048:C:T	rs1360344829	C	T	.	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	28562981	28562982	chr20:28562982:C:T	rs1265811049	C	T	.	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr20	28889849	28889850	chr20:28889850:A:C	chr20:28889850:A:C	A	C	.	Sox1.mouse_HMG_3	8	1	+	8.130658331710325	1.2219035523951034	TCCATTCCATTGA
chr20	29120592	29120593	chr20:29120593:G:A	rs1327476296	G	A	.	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr20	29298552	29298553	chr20:29298553:G:A	rs1178288185	G	A	.	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr20	29298571	29298572	chr20:29298572:A:G	rs1285674799	A	G	.	Sox1.mouse_HMG_3	4	1	-	5.572274745425204	-1.327821276189442	TGAATACCATTGG
chr20	29307264	29307265	chr20:29307265:C:G	rs1430939789	C	G	.	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr20	29329861	29329862	chr20:29329862:C:G	rs879060105	C	G	.	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr20	29876511	29876512	chr20:29876512:G:A	rs1460358818	G	A	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr20	30302665	30302666	chr20:30302666:T:C	rs6087210	T	C	.	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr20	30486777	30486778	chr20:30486778:C:T	rs1189938455	C	T	.	Sox1.mouse_HMG_3	1	1	+	4.020817900724426	-0.9374543303892002	TCAATTCCTTTAA
chr20	30500619	30500620	chr20:30500620:A:G	rs879022409	A	G	.	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr20	30501199	30501200	chr20:30501200:T:C	rs1306998449	T	C	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr20	30501243	30501244	chr20:30501244:G:A	rs1214213742	G	A	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr20	31053380	31053381	chr20:31053381:T:A	rs941958388	T	A	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr20	31053382	31053383	chr20:31053383:C:G	rs1359600266	C	G	.	Sox1.mouse_HMG_3	11	1	-	10.101045328349015	5.534216636229452	ACACTTACATTGA
chr20	31053508	31053509	chr20:31053509:C:G	rs1055793926	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31053802	31053803	chr20:31053803:T:C	rs1265510001	T	C	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr20	31053898	31053899	chr20:31053899:G:T	rs894772238	G	T	.	Sox1.mouse_HMG_3	6	1	-	12.540195207207693	12.591748550084231	TCAATTCCATTGC
chr20	31054188	31054189	chr20:31054189:C:G	rs1226396276	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31054212	31054213	chr20:31054213:G:T	rs1373196297	G	T	.	Sox1.mouse_HMG_3	12	1	-	7.973366515088131	10.47258441890598	TCAATTCCATTCC
chr20	31054250	31054251	chr20:31054251:A:T	rs1039994135	A	T	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr20	31054280	31054281	chr20:31054281:A:T	chr20:31054281:A:T	A	T	.	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	31054502	31054503	chr20:31054503:G:A	rs1208700181	G	A	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	31055242	31055243	chr20:31055243:G:T	rs991441904	G	T	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr20	31058245	31058246	chr20:31058246:G:T	rs1186815951	G	T	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr20	31058787	31058788	chr20:31058788:C:G	rs1310366425	C	G	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr20	31058821	31058822	chr20:31058822:A:C	rs1273849235	A	C	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	31059020	31059021	chr20:31059021:G:A	rs1322111761	G	A	.	Sox1.mouse_HMG_3	6	1	-	5.631440427892477	5.118362612782006	TCCATTCCATTGC
chr20	31059028	31059029	chr20:31059029:A:C	rs1432503809	A	C	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	31059039	31059040	chr20:31059040:A:G	rs1173002609	A	G	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	31059249	31059250	chr20:31059250:G:A	rs1182045015	G	A	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	31059260	31059261	chr20:31059261:G:T	rs1200297544	G	T	.	Sox1.mouse_HMG_3	6	1	-	7.973366515088131	8.024919857964669	TCAATTCCATTCC
chr20	31059330	31059331	chr20:31059331:G:C	chr20:31059331:G:C	G	C	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr20	31059534	31059535	chr20:31059535:G:C	chr20:31059535:G:C	G	C	.	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	31061278	31061279	chr20:31061279:A:G	rs985425624	A	G	.	Sox1.mouse_HMG_3	2	1	-	3.4672758986960512	3.4672758986960512	TCTCTTCCATTGC
chr20	31061601	31061602	chr20:31061602:A:C	chr20:31061602:A:C	A	C	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr20	31061714	31061715	chr20:31061715:T:G	rs1452336705	T	G	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr20	31061719	31061720	chr20:31061720:C:G	rs1245970613	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31061734	31061735	chr20:31061735:A:C	rs1193652819	A	C	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr20	31061809	31061810	chr20:31061810:C:G	rs1412345414	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31061878	31061879	chr20:31061879:G:A	rs1337912962	G	A	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	31062027	31062028	chr20:31062028:T:C	chr20:31062028:T:C	T	C	.	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr20	31062033	31062034	chr20:31062034:A:G	rs1264175895	A	G	.	Sox1.mouse_HMG_3	12	1	-	5.717217289639178	5.631440427892477	TCCATTCCATTGT
chr20	31062122	31062123	chr20:31062123:T:A	rs1218100437	T	A	.	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr20	31062181	31062182	chr20:31062182:T:A	rs1192178404	T	A	.	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	31062184	31062185	chr20:31062185:G:T	rs1210996085	G	T	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr20	31062634	31062635	chr20:31062635:A:G	rs1274084808	A	G	.	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	31062691	31062692	chr20:31062692:G:A	rs1416128291	G	A	.	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr20	31062728	31062729	chr20:31062729:G:T	rs1324040141	G	T	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr20	31062779	31062780	chr20:31062780:G:A	rs1437040116	G	A	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr20	31062789	31062790	chr20:31062790:C:G	rs1162724719	C	G	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr20	31062884	31062885	chr20:31062885:A:G	rs1379948318	A	G	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr20	31062901	31062902	chr20:31062902:A:C	rs1259808758	A	C	.	Sox1.mouse_HMG_3	4	1	-	5.206477831113791	-1.6936181905008574	TCCATTGCATTGC
chr20	31062908	31062909	chr20:31062909:A:C	rs1299087271	A	C	.	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	31063786	31063787	chr20:31063787:C:T	chr20:31063787:C:T	C	T	.	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	31064182	31064183	chr20:31064183:T:C	rs1401063388	T	C	.	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr20	31064928	31064929	chr20:31064929:G:A	rs962230829	G	A	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr20	31065518	31065519	chr20:31065519:T:G	rs1463514719	T	G	.	Sox1.mouse_HMG_3	2	1	-	7.4642766421032505	0.5555218627880314	TCAATGCCATTCC
chr20	31065530	31065531	chr20:31065531:G:A	rs1299554784	G	A	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	31065534	31065535	chr20:31065535:G:T	chr20:31065535:G:T	G	T	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr20	31065691	31065692	chr20:31065692:A:T	chr20:31065692:A:T	A	T	.	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr20	31066067	31066068	chr20:31066068:G:C	rs1267108444	G	C	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr20	31067079	31067080	chr20:31067080:G:T	rs1241812901	G	T	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr20	31067083	31067084	chr20:31067084:A:C	chr20:31067084:A:C	A	C	.	Sox1.mouse_HMG_3	9	1	-	5.631440427892477	1.8633653907799421	TCCATTCCATTGC
chr20	31067284	31067285	chr20:31067285:A:T	rs1164421506	A	T	.	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr20	31067294	31067295	chr20:31067295:T:C	rs1157442257	T	C	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr20	31067380	31067381	chr20:31067381:C:A	chr20:31067381:C:A	C	A	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	31067575	31067576	chr20:31067576:C:G	rs1257944151	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31067860	31067861	chr20:31067861:A:C	rs1304972184	A	C	.	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	31067904	31067905	chr20:31067905:A:G	rs1212115901	A	G	.	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr20	31068231	31068232	chr20:31068232:A:C	chr20:31068232:A:C	A	C	.	Sox1.mouse_HMG_3	10	1	-	5.631440427892477	-1.2686555937221715	TCCATTCCATTGC
chr20	31068253	31068254	chr20:31068254:T:A	rs1410714413	T	A	.	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr20	31068315	31068316	chr20:31068316:G:C	chr20:31068316:G:C	G	C	.	Sox1.mouse_HMG_3	1	1	-	7.973366515088131	1.0706137277287877	TCAATTCCATTCC
chr20	31068327	31068328	chr20:31068328:A:G	chr20:31068328:A:G	A	G	.	Sox1.mouse_HMG_3	4	1	-	12.540195207207693	5.640099185593048	TCAATTCCATTGC
chr20	31068330	31068331	chr20:31068331:G:C	chr20:31068331:G:C	G	C	.	Sox1.mouse_HMG_3	1	1	-	12.540195207207693	5.637442419848352	TCAATTCCATTGC
chr20	31068495	31068496	chr20:31068496:C:G	rs1317296981	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31069074	31069075	chr20:31069075:C:G	rs1276688967	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31069432	31069433	chr20:31069433:T:A	rs908705391	T	A	.	Sox1.mouse_HMG_3	12	1	-	10.929572680039644	8.516131637968499	TCAATTCCATTAA
chr20	31069615	31069616	chr20:31069616:A:G	chr20:31069616:A:G	A	G	.	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr20	31070590	31070591	chr20:31070591:C:T	rs957987639	C	T	.	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr20	31070596	31070597	chr20:31070597:A:G	rs1020613189	A	G	.	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	31070603	31070604	chr20:31070604:A:G	rs1361784701	A	G	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr20	31070604	31070605	chr20:31070605:T:C	rs1310873280	T	C	.	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr20	31070828	31070829	chr20:31070829:G:C	rs1246668706	G	C	.	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	31070966	31070967	chr20:31070967:C:G	rs1200548351	C	G	.	Sox1.mouse_HMG_3	11	1	-	6.355023325974683	1.7881946338551198	TCCATACCATTGC
chr20	31070970	31070971	chr20:31070971:G:C	rs919571768	G	C	.	Sox1.mouse_HMG_3	7	1	-	6.355023325974683	-0.524713064489928	TCCATACCATTGC
chr20	31070976	31070977	chr20:31070977:G:C	rs1205459719	G	C	.	Sox1.mouse_HMG_3	1	1	-	6.355023325974683	-0.5477294613846604	TCCATACCATTGC
chr20	31072106	31072107	chr20:31072107:G:T	rs1330426383	G	T	.	Sox1.mouse_HMG_3	3	1	-	9.62452938869379	11.788693917890216	ACACTTGCATTGA
chr20	31072287	31072288	chr20:31072288:A:C	rs1430815158	A	C	.	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr20	31072313	31072314	chr20:31072314:T:G	rs1209627447	T	G	.	Sox1.mouse_HMG_3	2	1	-	5.14760991873149	-1.7611448605837308	ACAATTCCATTCC
chr20	31072315	31072316	chr20:31072316:T:A	rs1252916775	T	A	.	Sox1.mouse_HMG_3	0	1	-	5.14760991873149	7.973366515088131	ACAATTCCATTCC
chr20	31072338	31072339	chr20:31072339:G:A	chr20:31072339:G:A	G	A	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr20	31072362	31072363	chr20:31072363:T:G	rs937521440	T	G	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	31072513	31072514	chr20:31072514:G:T	rs1439122197	G	T	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr20	31072527	31072528	chr20:31072528:T:C	rs923527773	T	C	.	Sox1.mouse_HMG_3	8	1	-	10.47258441890598	3.5638296395907605	TCAATTCCATTCA
chr20	31072587	31072588	chr20:31072588:T:C	chr20:31072588:T:C	T	C	.	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr20	31072883	31072884	chr20:31072884:T:C	rs1419299576	T	C	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr20	31073089	31073090	chr20:31073090:T:G	rs1022299670	T	G	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr20	31073211	31073212	chr20:31073212:A:G	rs1408945759	A	G	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	31073216	31073217	chr20:31073217:G:A	rs1039544067	G	A	.	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	31073469	31073470	chr20:31073470:G:C	chr20:31073470:G:C	G	C	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr20	31073663	31073664	chr20:31073664:T:G	rs1235871251	T	G	.	Sox1.mouse_HMG_3	2	1	-	7.973366515088131	1.0646117357729126	TCAATTCCATTCC
chr20	31073738	31073739	chr20:31073739:T:G	rs1273140507	T	G	.	Sox1.mouse_HMG_3	2	1	-	10.929572680039644	4.020817900724427	TCAATTCCATTAA
chr20	31073744	31073745	chr20:31073745:T:G	rs1341318244	T	G	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr20	31073751	31073752	chr20:31073752:C:A	rs1195598144	C	A	.	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	31073756	31073757	chr20:31073757:G:C	rs1259927079	G	C	.	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	31073812	31073813	chr20:31073813:A:C	rs1045747975	A	C	.	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr20	31073824	31073825	chr20:31073825:G:A	rs1313917420	G	A	.	Sox1.mouse_HMG_3	6	1	-	10.47258441890598	9.959506603795509	TCAATTCCATTCA
chr20	31073829	31073830	chr20:31073830:G:C	rs1448166452	G	C	.	Sox1.mouse_HMG_3	1	1	-	10.47258441890598	3.5698316315466365	TCAATTCCATTCA
chr20	31073989	31073990	chr20:31073990:A:G	rs1440268830	A	G	.	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	31074029	31074030	chr20:31074030:G:A	rs1356495885	G	A	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr20	31074274	31074275	chr20:31074275:G:C	rs905894745	G	C	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr20	31074285	31074286	chr20:31074286:A:G	rs1054959164	A	G	.	Sox1.mouse_HMG_3	5	1	-	7.973366515088131	4.1609619600709475	TCAATTCCATTCC
chr20	31074299	31074300	chr20:31074300:G:C	rs1352980341	G	C	.	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	31074303	31074304	chr20:31074304:A:G	rs1328516061	A	G	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	31074364	31074365	chr20:31074365:G:C	rs1230663741	G	C	.	Sox1.mouse_HMG_3	6	1	-	3.4672758986960512	3.0423133019173663	TCCCTTCCATTGC
chr20	31075116	31075117	chr20:31075117:T:G	rs1432452651	T	G	.	Sox1.mouse_HMG_3	2	1	-	7.973366515088131	1.0646117357729126	TCAATTCCATTCC
chr20	31075133	31075134	chr20:31075134:T:A	rs1184239760	T	A	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr20	31075222	31075223	chr20:31075223:C:G	rs943611828	C	G	.	Sox1.mouse_HMG_3	6	1	-	12.11523261042901	12.540195207207693	TCAATTGCATTGC
chr20	31075518	31075519	chr20:31075519:A:C	rs1225046624	A	C	.	Sox1.mouse_HMG_3	0	1	-	5.631440427892477	-1.2207387142008093	TCCATTCCATTGC
chr20	31075525	31075526	chr20:31075526:A:T	rs1329131635	A	T	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr20	31075535	31075536	chr20:31075536:G:A	rs1387287879	G	A	.	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr20	31075592	31075593	chr20:31075593:C:G	rs1179042533	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31075770	31075771	chr20:31075771:T:A	chr20:31075771:T:A	T	A	.	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr20	31075781	31075782	chr20:31075782:G:C	rs1168803239	G	C	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	31157773	31157774	chr20:31157774:G:T	rs1029009860	G	T	.	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr20	31161996	31161997	chr20:31161997:G:C	rs1489535278	G	C	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	31163638	31163639	chr20:31163639:G:A	rs879151527	G	A	.	Sox1.mouse_HMG_3	11	1	-	7.973366515088131	5.655892809600335	TCAATTCCATTCC
chr20	31164545	31164546	chr20:31164546:G:A	rs879021679	G	A	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr20	31169636	31169637	chr20:31169637:G:T	rs974085069	G	T	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr20	31174488	31174489	chr20:31174489:G:A	rs1007664697	G	A	.	Sox1.mouse_HMG_3	1	1	-	7.973366515088131	3.015094283974506	TCAATTCCATTCC
chr20	31186761	31186762	chr20:31186762:G:C	rs1174009560	G	C	.	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	31186941	31186942	chr20:31186942:C:T	chr20:31186942:C:T	C	T	.	Sox1.mouse_HMG_3	6	1	-	5.206477831113791	5.682993770769013	TCCATTGCATTGC
chr20	31187151	31187152	chr20:31187152:C:G	rs989356187	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.6532856994071885	1.0864570072876245	TCAATTCCACTGC
chr20	31187185	31187186	chr20:31187186:T:C	rs1410202764	T	C	.	Sox1.mouse_HMG_3	6	1	-	6.28864077333183	5.812124833676608	ACACTCACATTGA
chr20	31187226	31187227	chr20:31187227:C:G	rs1318028634	C	G	.	Sox1.mouse_HMG_3	11	1	-	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr20	31187230	31187231	chr20:31187231:G:C	chr20:31187231:G:C	G	C	.	Sox1.mouse_HMG_3	7	1	-	5.631440427892477	-1.2482959625721353	TCCATTCCATTGC
chr20	31187289	31187290	chr20:31187290:G:T	rs1047092090	G	T	.	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr20	31567323	31567324	chr20:31567324:C:T	rs545804263	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	31885384	31885385	chr20:31885385:T:C	rs6061015	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr20	32139016	32139017	chr20:32139017:G:A	rs2281359	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr20	32139025	32139026	chr20:32139026:A:G	rs2281360	A	G	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr20	32437427	32437428	chr20:32437428:T:C	rs2295763	T	C	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr20	33032812	33032813	chr20:33032813:T:A	rs8113852	T	A	T	Sox1.mouse_HMG_3	4	1	+	4.395590758802294	-0.23962203700231988	TTACTGTCATTGC
chr20	33203403	33203404	chr20:33203404:A:G	rs112481928	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr20	33238220	33238221	chr20:33238221:T:C	rs6059183	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr20	33271966	33271967	chr20:33271967:A:T	rs78206376	A	T	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr20	33935365	33935366	chr20:33935366:C:G	rs6059574	C	G	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr20	33970035	33970036	chr20:33970036:A:G	rs10485503	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr20	34314559	34314560	chr20:34314560:G:C	rs77301717	G	C	C	Sox1.mouse_HMG_3	11	1	+	5.9664938025139005	1.3996651103943365	TCCCTTCCATTGA
chr20	34314573	34314574	chr20:34314574:T:C	rs73263386	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	34675228	34675229	chr20:34675229:T:C	rs6087616	T	C	C	Sox1.mouse_HMG_3	8	1	-	6.050548307883615	-0.8582064714316056	TCACTCTCATTGC
chr20	34843595	34843596	chr20:34843596:A:G	rs192101467	A	G	a	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr20	34922858	34922859	chr20:34922859:A:G	rs6087649	A	G	A	Sox1.mouse_HMG_3	8	1	+	3.4954455359057106	-3.41330924340951	TCCATTCCATCGA
chr20	35041001	35041002	chr20:35041002:A:G	rs6060172	A	G	a	Sox1.mouse_HMG_3	9	1	-	4.9443261144185495	-1.9425833933819585	TCTCTGTCATTGA
chr20	35148893	35148894	chr20:35148894:A:C	rs1124511	A	C	C	Sox1.mouse_HMG_3	10	1	-	4.222684236037251	-2.6774117855773962	TCAAATCCAGTGT
chr20	35280120	35280121	chr20:35280121:G:A	rs2250205	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	35616529	35616530	chr20:35616530:G:T	rs115770665	G	T	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr20	36144449	36144450	chr20:36144450:C:A	rs1474976	C	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr20	36260193	36260194	chr20:36260194:C:T	rs2425193	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr20	36836822	36836823	chr20:36836823:T:C	rs187366352	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr20	36836833	36836834	chr20:36836834:T:C	rs191906463	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr20	37218614	37218615	chr20:37218615:C:G	rs112719061	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr20	37220403	37220404	chr20:37220404:G:A	rs111957006	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.492880942676994	0.3830405116910951	TCATTGACATTGG
chr20	37232026	37232027	chr20:37232027:G:A	rs909870	G	A	A	Sox1.mouse_HMG_3	11	1	-	7.799330016724676	5.48185631123688	TCACTGCCATTCA
chr20	37245706	37245707	chr20:37245707:G:A	rs189819205	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr20	37600219	37600220	chr20:37600220:C:T	rs2144504	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	37734658	37734659	chr20:37734659:G:A	rs115143078	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr20	37777429	37777430	chr20:37777430:C:G	rs145594973	C	G	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	37922083	37922084	chr20:37922084:G:C	rs62201729	G	C	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr20	38141083	38141084	chr20:38141084:C:T	rs17789803	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr20	38158584	38158585	chr20:38158585:A:G	rs2284882	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr20	38173546	38173547	chr20:38173547:T:C	rs116125512	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr20	38275048	38275049	chr20:38275049:T:G	rs77333306	T	G	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr20	38527643	38527644	chr20:38527644:G:A	rs805558	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	38707011	38707012	chr20:38707012:A:G	rs77796797	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr20	38877669	38877670	chr20:38877670:T:A	rs208802	T	A	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	39426298	39426299	chr20:39426299:A:T	rs2143214	A	T	T	Sox1.mouse_HMG_3	12	1	+	4.573088377569528	2.159647335498382	TCAATATCTGTGA
chr20	39426371	39426372	chr20:39426372:A:C	rs2143215	A	C	C	Sox1.mouse_HMG_3	0	1	+	5.524065576025992	1.497643030289349	ACAATATCATGGA
chr20	39432725	39432726	chr20:39432726:T:G	rs8122510	T	G	G	Sox1.mouse_HMG_3	0	1	+	5.466062687229593	-1.3861164548636924	TCACTGCCATGGA
chr20	39668612	39668613	chr20:39668613:A:G	rs1123102	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr20	39849990	39849991	chr20:39849991:C:T	rs143652643	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr20	39850013	39850014	chr20:39850014:C:T	rs148097573	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr20	40080359	40080360	chr20:40080360:G:A	rs16988767	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr20	40266145	40266146	chr20:40266146:A:G	rs6071994	A	G	G	Sox1.mouse_HMG_3	11	1	+	11.140077763011384	15.249918193997281	TCAATATCATTAA
chr20	40651237	40651238	chr20:40651238:G:A	rs746031423	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr20	40771674	40771675	chr20:40771675:A:T	rs80054400	A	T	a	Sox1.mouse_HMG_3	8	1	-	5.541531205735215	12.450285985050433	TCACTTGCTTTGA
chr20	40771702	40771703	chr20:40771703:T:C	rs6129679	T	C	t	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr20	40848842	40848843	chr20:40848843:A:C	rs7270566	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr20	41072374	41072375	chr20:41072375:A:C	rs62209454	A	C	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr20	41185283	41185284	chr20:41185284:G:A	rs140175465	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr20	41335250	41335251	chr20:41335251:C:T	rs370714147	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr20	41335269	41335270	chr20:41335270:C:G	rs563862578	C	G	C	Sox1.mouse_HMG_3	3	1	+	3.018398126288282	-1.6184645064323007	TCACTGACATGGC
chr20	41459954	41459955	chr20:41459955:T:A	rs73611278	T	A	T	Sox1.mouse_HMG_3	0	1	+	4.69738795812891	1.8716313617722675	TCAATGGCTTTGC
chr20	41660143	41660144	chr20:41660144:A:C	rs6016595	A	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr20	41891333	41891334	chr20:41891334:T:G	rs6093531	T	G	T	Sox1.mouse_HMG_3	0	1	+	5.933724364566791	-0.9184547775264942	TGAATATCATTGT
chr20	42099454	42099455	chr20:42099455:A:G	rs876523	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	42285265	42285266	chr20:42285266:T:C	rs79606907	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr20	42442184	42442185	chr20:42442185:C:A	rs187683710	C	A	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr20	42442732	42442733	chr20:42442733:C:T	rs547771091	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr20	43532242	43532243	chr20:43532243:G:A	rs2071970	G	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr20	43591389	43591390	chr20:43591390:T:C	rs562281872	T	C	T	Sox1.mouse_HMG_3	2	1	-	9.205491017180544	2.296736237865322	TCAATAACATTAC
chr20	43821830	43821831	chr20:43821831:A:G	rs6093885	A	G	A	Sox1.mouse_HMG_3	9	1	-	14.530323238040662	7.643413730240157	TCAATGCCATTGA
chr20	43917681	43917682	chr20:43917682:C:G	rs73287071	C	G	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr20	43999956	43999957	chr20:43999957:G:A	rs6073277	G	A	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr20	44029200	44029201	chr20:44029201:T:C	rs6017247	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.292427048379167	-2.6163277309360518	TCAAAAACAATGA
chr20	44029221	44029222	chr20:44029222:T:C	rs6103572	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr20	44129600	44129601	chr20:44129601:G:A	rs761210	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr20	44216672	44216673	chr20:44216673:G:C	rs6031461	G	C	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr20	44410303	44410304	chr20:44410304:C:A	rs3212192	C	A	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr20	44412593	44412594	chr20:44412594:C:G	rs6065726	C	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	44427508	44427509	chr20:44427509:G:T	rs6031598	G	T	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	44664486	44664487	chr20:44664487:G:C	rs75076579	G	C	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr20	44777134	44777135	chr20:44777135:G:C	rs140327843	G	C	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr20	45049641	45049642	chr20:45049642:T:C	rs2299977	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr20	45049686	45049687	chr20:45049687:A:C	rs183317848	A	C	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr20	45128160	45128161	chr20:45128161:T:C	rs6104024	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr20	45306296	45306297	chr20:45306297:T:C	rs2233085	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr20	45379791	45379792	chr20:45379792:G:A	rs2741639	G	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr20	45387461	45387462	chr20:45387462:A:G	rs2263763	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.667699837840772	0.7807903300402643	TTAATTCCATTGT
chr20	45489270	45489271	chr20:45489271:T:A	rs113418595	T	A	t	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr20	45579864	45579865	chr20:45579865:A:G	rs6032346	A	G	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr20	45635550	45635551	chr20:45635551:G:A	rs6017637	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr20	45817171	45817172	chr20:45817172:T:C	rs188681934	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr20	45891033	45891034	chr20:45891034:T:C	rs554749359	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr20	46001124	46001125	chr20:46001125:T:C	rs73295268	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.357059217052814	1.4483044377375944	TTAATAACATTGC
chr20	46760998	46760999	chr20:46760999:C:A	rs4810554	C	A	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr20	46769635	46769636	chr20:46769636:T:C	rs3091430	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr20	46810735	46810736	chr20:46810736:C:A	rs6094487	C	A	C	Sox1.mouse_HMG_3	12	1	+	5.568893304645391	8.06811120846324	ACAATTTTATTGC
chr20	47118484	47118485	chr20:47118485:C:G	rs6122555	C	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr20	47297238	47297239	chr20:47297239:G:A	rs900886229	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.3755077597648775	1.2656673287789797	ACAATATCATCGT
chr20	47384300	47384301	chr20:47384301:T:A	rs534454508	T	A	t	Sox1.mouse_HMG_3	0	1	+	6.750288801173218	3.924532204816575	TCACTAACATGGA
chr20	47384321	47384322	chr20:47384322:T:C	rs547104118	T	C	t	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr20	47681181	47681182	chr20:47681182:G:A	rs73913415	G	A	G	Sox1.mouse_HMG_3	7	1	-	8.416598165360817	4.7841306742656275	ACAATGCCATTGG
chr20	47791897	47791898	chr20:47791898:G:A	rs10427418	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr20	47887971	47887972	chr20:47887972:C:A	rs2426003	C	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr20	47958344	47958345	chr20:47958345:G:C	rs578022196	G	C	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr20	47963423	47963424	chr20:47963424:T:C	rs6018817	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	47963424	47963425	chr20:47963425:G:A	rs6012307	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr20	47963564	47963565	chr20:47963565:T:C	rs4372968	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	48177149	48177150	chr20:48177150:C:T	rs2034811	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr20	48412105	48412106	chr20:48412106:T:C	rs4809690	T	C	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr20	48412153	48412154	chr20:48412154:T:C	rs4809691	T	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr20	48437518	48437519	chr20:48437519:C:T	rs1321006	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr20	48573811	48573812	chr20:48573812:A:T	rs73325581	A	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr20	48668455	48668456	chr20:48668456:T:A	rs578056917	T	A	T	Sox1.mouse_HMG_3	12	1	-	3.8138347192832422	1.400393677212096	TCAAGCTCATTGA
chr20	48737910	48737911	chr20:48737911:A:G	rs79895253	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr20	48753991	48753992	chr20:48753992:T:A	rs6066842	T	A	A	Sox1.mouse_HMG_3	0	1	+	4.3296120402766505	1.5038554439200085	TCAATTTCCTTGG
chr20	48764452	48764453	chr20:48764453:T:C	rs6019409	T	C	t	Sox1.mouse_HMG_3	9	1	+	15.338033412329064	8.45112390452856	TCAATAGCATTGA
chr20	48809588	48809589	chr20:48809589:T:G	rs16994152	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	48910268	48910269	chr20:48910269:C:T	rs6019513	C	T	c	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	48944290	48944291	chr20:48944291:T:C	rs6012569	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	49010063	49010064	chr20:49010064:G:C	rs2295578	G	C	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr20	49052639	49052640	chr20:49052640:G:A	rs67623477	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr20	49172103	49172104	chr20:49172104:G:A	rs144912266	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr20	49186755	49186756	chr20:49186756:C:T	rs348286	C	T	T	Sox1.mouse_HMG_3	6	1	-	5.212479823069666	5.68899576272489	TAAATTGCATTGC
chr20	49186763	49186764	chr20:49186764:A:C	rs35667796	A	C	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	49237482	49237483	chr20:49237483:T:C	rs6067025	T	C	T	Sox1.mouse_HMG_3	3	1	+	5.311867091926922	9.948729724647503	TCATTTTCATTGT
chr20	49237506	49237507	chr20:49237507:C:T	rs238153	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr20	49282023	49282024	chr20:49282024:T:C	rs67214274	T	C	t	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr20	49310931	49310932	chr20:49310932:G:C	rs78463987	G	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr20	49471460	49471461	chr20:49471461:A:C	rs552068	A	C	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr20	49805142	49805143	chr20:49805143:C:T	rs7264383	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr20	49823697	49823698	chr20:49823698:G:A	rs17788605	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr20	49829753	49829754	chr20:49829754:A:G	rs17724104	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr20	49848383	49848384	chr20:49848384:A:G	rs184343568	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr20	49868778	49868779	chr20:49868779:G:A	rs56405223	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr20	49920716	49920717	chr20:49920717:T:C	rs6067270	T	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr20	49993755	49993756	chr20:49993756:A:G	rs6067309	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr20	50130196	50130197	chr20:50130197:G:A	rs6020283	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr20	50130213	50130214	chr20:50130214:A:G	chr20:50130214:A:G	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.774875550488732	1.1396627546841178	TCACTCCCATTGG
chr20	50244201	50244202	chr20:50244202:C:G	rs73121359	C	G	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	50355147	50355148	chr20:50355148:G:T	rs4809781	G	T	N	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr20	50492455	50492456	chr20:50492456:A:G	rs111953176	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.110696719711372	1.3096695577943662	TCAATTACATTCT
chr20	50511702	50511703	chr20:50511703:G:A	rs6020572	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr20	50786597	50786598	chr20:50786598:A:G	rs73278635	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	50786615	50786616	chr20:50786616:T:C	rs73278636	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr20	50929424	50929425	chr20:50929425:C:T	chr20:50929425:C:T	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr20	51026155	51026156	chr20:51026156:G:C	rs6091250	G	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	51172595	51172596	chr20:51172596:A:G	rs2426257	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr20	51233933	51233934	chr20:51233934:C:T	rs2038194	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr20	51395322	51395323	chr20:51395323:T:C	rs4811171	T	C	-	Sox1.mouse_HMG_3	8	1	-	4.296071295373542	-2.612683483941679	TCAATACCATACA
chr20	51443610	51443611	chr20:51443611:T:C	rs228832	T	C	T	Sox1.mouse_HMG_3	3	1	-	3.93048265713827	-2.870544504778737	TCAATGGCACTGG
chr20	51554829	51554830	chr20:51554830:C:T	rs147317695	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr20	51554830	51554831	chr20:51554831:A:G	rs4811193	A	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr20	51554861	51554862	chr20:51554862:G:A	rs76423759	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	51895546	51895547	chr20:51895547:T:G	rs73275680	T	G	T	Sox1.mouse_HMG_3	5	1	+	5.124364604737881	4.615274731753001	TAAATTTCATTGC
chr20	51923559	51923560	chr20:51923560:G:T	rs62226919	G	T	T	Sox1.mouse_HMG_3	12	1	-	4.144131199262434	6.643349103080283	TCAAACACATTGC
chr20	51923589	51923590	chr20:51923590:A:C	rs2904144	A	C	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr20	51995141	51995142	chr20:51995142:G:A	rs77243645	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr20	52267147	52267148	chr20:52267148:C:T	rs4811317	C	T	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	52318934	52318935	chr20:52318935:C:T	rs6123155	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr20	52619073	52619074	chr20:52619074:A:G	rs6068280	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr20	52634419	52634420	chr20:52634420:G:A	rs856429	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr20	53028596	53028597	chr20:53028597:A:G	rs6097197	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr20	53170299	53170300	chr20:53170300:C:A	rs1299896	C	A	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr20	53426164	53426165	chr20:53426165:G:C	rs77936907	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr20	53639554	53639555	chr20:53639555:T:C	rs75394107	T	C	t	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr20	53657829	53657830	chr20:53657830:T:A	rs6022643	T	A	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr20	53735570	53735571	chr20:53735571:T:C	rs7265045	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr20	53786294	53786295	chr20:53786295:A:G	rs1053144781	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.777429390216287	-1.023597771700717	TCAAGTACATTGT
chr20	53866005	53866006	chr20:53866006:A:G	rs6013823	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr20	53894918	53894919	chr20:53894919:G:C	rs6068711	G	C	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr20	54178258	54178259	chr20:54178259:G:A	rs117596617	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	54183060	54183061	chr20:54183061:C:G	rs1555438	C	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr20	54220069	54220070	chr20:54220070:T:A	rs1032212729	T	A	T	Sox1.mouse_HMG_3	2	1	-	5.4747331024701005	-1.4340216768451206	ACAATCTCATTGT
chr20	54269510	54269511	chr20:54269511:A:G	rs292136	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr20	54310962	54310963	chr20:54310963:T:A	rs28470915	T	A	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr20	54510681	54510682	chr20:54510682:G:A	rs6098039	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr20	54646876	54646877	chr20:54646877:T:C	rs11907426	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.02670590309101	-0.8602036047094974	TCACCTACATTGA
chr20	55002480	55002481	chr20:55002481:T:C	rs6127367	T	C	C	Sox1.mouse_HMG_3	9	1	+	4.2470765067525456	-2.639833001047962	ATAATGCCATTGC
chr20	55067660	55067661	chr20:55067661:A:G	rs78023978	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr20	55199286	55199287	chr20:55199287:T:C	rs6127426	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.291589128901045	1.404679621100536	TCACATACATTGA
chr20	55216585	55216586	chr20:55216586:T:A	rs2904455	T	A	A	Sox1.mouse_HMG_3	12	1	-	9.540544391801966	7.12710334973082	TCACTAACATTAA
chr20	56553516	56553517	chr20:56553517:G:A	rs73153084	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr20	56724349	56724350	chr20:56724350:A:G	rs2426662	A	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr20	56987511	56987512	chr20:56987512:T:C	rs148541976	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr20	57110804	57110805	chr20:57110805:T:C	rs62203922	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	57260054	57260055	chr20:57260055:G:C	rs4811832	G	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr20	57464070	57464071	chr20:57464071:G:T	rs6025577	G	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr20	57476331	57476332	chr20:57476332:C:T	rs2182971	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr20	57476332	57476333	chr20:57476333:A:G	rs879918	A	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr20	57610075	57610076	chr20:57610076:G:A	rs742724	G	A	A	Sox1.mouse_HMG_3	3	1	-	3.9145534158968496	-0.72230921682373	TCACTCTCATCGA
chr20	57634705	57634706	chr20:57634706:C:T	rs6128108	C	T	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr20	57647143	57647144	chr20:57647144:A:G	rs73915230	A	G	A	Sox1.mouse_HMG_3	0	1	-	3.5617115181433268	-3.2904676239499584	TCACGTCCATTGT
chr20	57684242	57684243	chr20:57684243:A:G	rs114539186	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.961968847190747	2.075059339390238	TCATTACCATTGA
chr20	57786181	57786182	chr20:57786182:C:G	rs78399477	C	G	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr20	57786204	57786205	chr20:57786205:C:T	rs530570467	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr20	57924826	57924827	chr20:57924827:T:G	chr20:57924827:T:G	T	G	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr20	58087184	58087185	chr20:58087185:G:T	rs73185158	G	T	g	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr20	58518132	58518133	chr20:58518133:C:A	rs59593106	C	A	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	58518142	58518143	chr20:58518143:A:G	rs1555298	A	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	58548970	58548971	chr20:58548971:A:G	rs1123030	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr20	58635529	58635530	chr20:58635530:T:C	rs564715920	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr20	58905311	58905312	chr20:58905312:G:T	rs3730169	G	T	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr20	59122039	59122040	chr20:59122040:C:T	rs236715	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr20	59134109	59134110	chr20:59134110:A:G	rs80225530	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr20	59163457	59163458	chr20:59163458:A:G	rs150784118	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr20	59639609	59639610	chr20:59639610:T:C	rs911150	T	C	C	Sox1.mouse_HMG_3	5	1	-	4.766246070321347	3.5335732992542583	TCAATACCAATAA
chr20	59813481	59813482	chr20:59813482:A:G	rs1338929	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr20	59822601	59822602	chr20:59822602:G:A	rs115768718	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	59992680	59992681	chr20:59992681:A:G	rs2426863	A	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr20	60007601	60007602	chr20:60007602:C:G	rs187751	C	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr20	60084137	60084138	chr20:60084138:C:T	rs78513871	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr20	60510190	60510191	chr20:60510191:T:A	chr20:60510191:T:A	T	A	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr20	60510322	60510323	chr20:60510323:C:T	rs6027657	C	T	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr20	60999368	60999369	chr20:60999369:T:C	rs2078451	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr20	61084272	61084273	chr20:61084273:A:G	rs62200924	A	G	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr20	61146051	61146052	chr20:61146052:T:C	rs8115323	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr20	61280808	61280809	chr20:61280809:T:G	rs75368605	T	G	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr20	61337953	61337954	chr20:61337954:A:G	rs6028126	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.627974418365065	-1.2807803609501556	ACAATAGCATTTA
chr20	61404578	61404579	chr20:61404579:A:T	rs141933255	A	T	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr20	61537142	61537143	chr20:61537143:A:G	rs6061619	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr20	61651269	61651270	chr20:61651270:T:A	rs4925267	T	A	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr20	61835428	61835429	chr20:61835429:G:A	rs34471004	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr20	61835463	61835464	chr20:61835464:G:A	rs34140814	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr20	61948721	61948722	chr20:61948722:C:G	rs6061391	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr20	62500122	62500123	chr20:62500123:C:T	rs1264260767	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr20	62792341	62792342	chr20:62792342:T:G	rs114305936	T	G	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr20	62792342	62792343	chr20:62792343:T:C	rs114958815	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr20	63012065	63012066	chr20:63012066:A:T	rs563360924	A	T	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr20	63057535	63057536	chr20:63057536:G:T	rs6062787	G	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr20	63137174	63137175	chr20:63137175:G:A	rs2427524	G	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr20	63678286	63678287	chr20:63678287:G:A	rs41310197	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr20	63825464	63825465	chr20:63825465:G:C	rs6011169	G	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr20	63973139	63973140	chr20:63973140:G:A	rs113085515	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr21	7243204	7243205	chr21:7243205:T:G	rs1484289566	T	G	.	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr21	7258580	7258581	chr21:7258581:A:G	rs1438729587	A	G	.	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr21	7258598	7258599	chr21:7258599:A:G	rs1490309547	A	G	.	Sox1.mouse_HMG_3	12	1	-	8.059143376834834	7.973366515088131	TCAATTCCATTCT
chr21	7258604	7258605	chr21:7258605:G:A	chr21:7258605:G:A	G	A	.	Sox1.mouse_HMG_3	6	1	-	8.059143376834834	7.5460655617243635	TCAATTCCATTCT
chr21	7260613	7260614	chr21:7260614:G:A	rs1176760686	G	A	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr21	7917115	7917116	chr21:7917116:C:A	rs1313946377	C	A	.	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr21	7951743	7951744	chr21:7951744:T:C	rs1251141343	T	C	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr21	7952194	7952195	chr21:7952195:C:G	rs1203904549	C	G	.	Sox1.mouse_HMG_3	1	1	+	8.059143376834834	1.1563905894754902	TCAATTCCATTCT
chr21	7955542	7955543	chr21:7955543:C:T	rs1421310927	C	T	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr21	7955579	7955580	chr21:7955580:T:A	rs1417244447	T	A	.	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr21	8988764	8988765	chr21:8988765:G:A	rs368003313	G	A	.	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr21	8988779	8988780	chr21:8988780:T:C	rs797020640	T	C	.	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr21	8993317	8993318	chr21:8993318:C:T	rs74908361	C	T	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr21	8994753	8994754	chr21:8994754:T:A	rs77410052	T	A	.	Sox1.mouse_HMG_3	3	1	-	4.443155026324938	-2.3578721355920673	TCAATTAGAGTGA
chr21	8994753	8994754	chr21:8994754:T:C	chr21:8994754:T:C	T	C	.	Sox1.mouse_HMG_3	3	1	-	4.443155026324938	-2.3578721355920673	TCAATTAGAGTGA
chr21	8995204	8995205	chr21:8995205:G:T	rs79277307	G	T	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr21	8995249	8995250	chr21:8995250:G:A	rs75577515	G	A	.	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr21	9004055	9004056	chr21:9004056:C:T	rs75458210	C	T	.	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr21	9004095	9004096	chr21:9004096:G:T	rs369289182	G	T	.	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr21	9005767	9005768	chr21:9005768:C:T	rs1807010	C	T	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr21	9246268	9246269	chr21:9246269:G:T	rs375631076	G	T	.	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr21	9246476	9246477	chr21:9246477:A:G	rs878927059	A	G	.	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr21	9246967	9246968	chr21:9246968:G:A	rs1277956112	G	A	.	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr21	9247058	9247059	chr21:9247059:A:G	rs376087336	A	G	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr21	9330940	9330941	chr21:9330941:A:T	rs369243700	A	T	.	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr21	9857929	9857930	chr21:9857930:T:C	rs2916358	T	C	t	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr21	10021207	10021208	chr21:10021208:T:C	rs867112965	T	C	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr21	10400939	10400940	chr21:10400940:T:C	rs1810530	T	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr21	10416532	10416533	chr21:10416533:T:C	rs4913584	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr21	10416560	10416561	chr21:10416561:G:A	rs2775403	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr21	10416565	10416566	chr21:10416566:T:A	rs28498040	T	A	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr21	10662108	10662109	chr21:10662109:C:T	rs28971650	C	T	.	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr21	10663710	10663711	chr21:10663711:C:T	rs28460337	C	T	.	Sox1.mouse_HMG_3	2	1	+	5.631440427892477	5.631440427892477	TCCATTCCATTGC
chr21	10668612	10668613	chr21:10668613:T:C	rs28970961	T	C	.	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr21	10685059	10685060	chr21:10685060:C:G	rs111669253	C	G	.	Sox1.mouse_HMG_3	1	1	+	7.184615942582777	0.2818631552234341	TCAATTCCATTCG
chr21	10693407	10693408	chr21:10693408:T:A	rs867634053	T	A	.	Sox1.mouse_HMG_3	4	1	+	6.759653345804093	2.12444054999948	TCAATTGCATTCG
chr21	10704855	10704856	chr21:10704856:C:A	rs28736815	C	A	.	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr21	10720933	10720934	chr21:10720934:C:T	rs111212577	C	T	.	Sox1.mouse_HMG_3	12	1	+	5.631440427892477	5.717217289639178	TCCATTCCATTGC
chr21	10726648	10726649	chr21:10726649:C:T	rs867903598	C	T	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr21	10728542	10728543	chr21:10728543:C:T	rs867515883	C	T	.	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr21	10733146	10733147	chr21:10733147:A:T	rs111212526	A	T	.	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr21	10734450	10734451	chr21:10734451:T:G	rs771280033	T	G	.	Sox1.mouse_HMG_3	10	1	+	8.69694941317034	1.7968533915556937	TCAATACCATTCC
chr21	10734458	10734459	chr21:10734459:A:G	rs28735724	A	G	.	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr21	10735020	10735021	chr21:10735021:T:C	rs57509446	T	C	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr21	10737299	10737300	chr21:10737300:A:C	rs28668819	A	C	.	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr21	13446887	13446888	chr21:13446888:C:T	rs118155607	C	T	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr21	13539379	13539380	chr21:13539380:C:T	rs11702153	C	T	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr21	13926747	13926748	chr21:13926748:G:C	rs3115469	G	C	.	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr21	14008423	14008424	chr21:14008424:C:T	rs9982143	C	T	c	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr21	14028296	14028297	chr21:14028297:C:T	rs2822383	C	T	N	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr21	14076538	14076539	chr21:14076539:T:C	rs62209925	T	C	c	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr21	14415416	14415417	chr21:14415417:G:A	rs2822661	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr21	14580944	14580945	chr21:14580945:G:T	rs8131857	G	T	T	Sox1.mouse_HMG_3	8	1	-	5.2041394745287075	12.112894253843926	TCAATTTCCTTGT
chr21	14583326	14583327	chr21:14583327:T:C	rs2822792	T	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr21	14683246	14683247	chr21:14683247:G:T	rs12482612	G	T	T	Sox1.mouse_HMG_3	6	1	-	6.20624619143512	6.257799534311658	ACACTACCATTCA
chr21	14720190	14720191	chr21:14720191:G:T	rs7280249	G	T	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr21	14720222	14720223	chr21:14720223:C:T	rs7281408	C	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr21	14837161	14837162	chr21:14837162:T:C	rs11702729	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr21	15010256	15010257	chr21:15010257:C:G	chr21:15010257:C:G	C	G	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr21	15052099	15052100	chr21:15052100:A:G	rs2823025	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr21	15301884	15301885	chr21:15301885:A:G	rs13049627	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr21	15355296	15355297	chr21:15355297:A:G	rs73177157	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr21	15628734	15628735	chr21:15628735:C:T	rs2823400	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr21	15689065	15689066	chr21:15689066:C:T	rs114613198	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr21	15689084	15689085	chr21:15689085:A:G	rs2242675	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr21	15692431	15692432	chr21:15692432:G:A	rs114134170	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr21	15743429	15743430	chr21:15743430:T:A	rs7277813	T	A	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr21	15858086	15858087	chr21:15858087:C:G	rs78470636	C	G	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr21	16108455	16108456	chr21:16108456:T:A	rs2823613	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.903681759081386	-2.0050730202338345	TCATTAACATTAA
chr21	16370009	16370010	chr21:16370010:A:G	rs2823756	A	G	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr21	16588555	16588556	chr21:16588556:A:C	rs1000760385	A	C	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr21	16830685	16830686	chr21:16830686:A:G	rs2223075	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr21	16870254	16870255	chr21:16870255:A:C	chr21:16870255:A:C	A	C	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr21	16871998	16871999	chr21:16871999:T:C	rs73891842	T	C	T	Sox1.mouse_HMG_3	5	1	-	5.0591969303147355	3.8265241592476467	TAAATATCATTGG
chr21	17159388	17159389	chr21:17159389:T:C	rs12483544	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr21	17195840	17195841	chr21:17195841:C:T	rs6517743	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.7918239202432105	-0.16644831087041623	ACAATTTCCTTGA
chr21	17195855	17195856	chr21:17195856:G:A	rs993271	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr21	17503214	17503215	chr21:17503215:C:T	rs117888660	C	T	C	Sox1.mouse_HMG_3	11	1	-	6.0158375909427	1.9059971599568017	TCAATAGCCTTGT
chr21	17512311	17512312	chr21:17512312:T:G	rs73324049	T	G	T	Sox1.mouse_HMG_3	9	1	+	6.72994885536947	2.961873818256937	TCACTAATATTGG
chr21	17944687	17944688	chr21:17944688:T:C	rs1876037	T	C	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr21	17944728	17944729	chr21:17944729:C:T	rs9305833	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr21	17949532	17949533	chr21:17949533:A:G	rs886935978	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.475261258918142	-1.4334935203970782	TCACTTTCAATGA
chr21	18155622	18155623	chr21:18155623:C:T	rs11700527	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr21	18155662	18155663	chr21:18155663:A:G	rs79271997	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr21	18668516	18668517	chr21:18668517:C:T	rs11911711	C	T	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr21	19046047	19046048	chr21:19046048:G:A	rs73893496	G	A	g	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr21	19046072	19046073	chr21:19046073:C:T	rs10854430	C	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr21	19356889	19356890	chr21:19356890:A:C	rs856185	A	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr21	20272952	20272953	chr21:20272953:G:A	rs112484390	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr21	21002446	21002447	chr21:21002447:C:T	rs7276994	C	T	T	Sox1.mouse_HMG_3	11	1	-	5.226090230180219	1.1162497991943212	TCAGTTTCATTGC
chr21	21201050	21201051	chr21:21201051:A:C	rs370415665	A	C	A	Sox1.mouse_HMG_3	9	1	-	4.964361859409548	1.196286822297015	TCACTTTCATTAG
chr21	21407166	21407167	chr21:21407167:C:G	rs2826829	C	G	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr21	21605762	21605763	chr21:21605763:C:A	rs74336637	C	A	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr21	21714343	21714344	chr21:21714344:A:G	rs1783417	A	G	A	Sox1.mouse_HMG_3	10	1	-	6.086039968268302	1.4508271724636879	AGAATAACATTGA
chr21	21714344	21714345	chr21:21714345:A:G	rs4143401	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.086039968268302	-0.8008695395322059	AGAATAACATTGA
chr21	21752549	21752550	chr21:21752550:A:G	rs2826992	A	G	a	Sox1.mouse_HMG_3	10	1	-	5.094824950380572	0.45961215457595705	TCAACACCAGTGA
chr21	21808249	21808250	chr21:21808250:C:A	rs2827050	C	A	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr21	22421859	22421860	chr21:22421860:C:A	rs963842	C	A	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr21	23009149	23009150	chr21:23009150:G:T	rs244248	G	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr21	23162736	23162737	chr21:23162737:G:A	rs7276380	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr21	23175595	23175596	chr21:23175596:C:T	rs2135335	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr21	23438525	23438526	chr21:23438526:C:A	rs34334058	C	A	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr21	23476059	23476060	chr21:23476060:C:A	rs74416209	C	A	c	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr21	23498859	23498860	chr21:23498860:C:G	rs62208226	C	G	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr21	23739485	23739486	chr21:23739486:T:A	rs7275880	T	A	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr21	24014047	24014048	chr21:24014048:A:G	rs34542175	A	G	a	Sox1.mouse_HMG_3	3	1	+	5.954513110903857	-0.846514051013147	TCAATAGCATTTC
chr21	24053925	24053926	chr21:24053926:G:T	rs2252741	G	T	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr21	24621995	24621996	chr21:24621996:T:A	rs7280627	T	A	t	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr21	24707818	24707819	chr21:24707819:C:G	rs2829283	C	G	t	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr21	24941856	24941857	chr21:24941857:T:G	rs2829472	T	G	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr21	25487098	25487099	chr21:25487099:G:A	rs17001003	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.482115024378237	0.5238427932646097	ACACTGACATTAA
chr21	25638799	25638800	chr21:25638800:A:G	rs974680	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.813076852025812	-0.07383265577469489	ACACTTACATTGG
chr21	26077618	26077619	chr21:26077619:C:T	rs117349040	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.232579798362158	4.719501983251687	TCAATGCCATTTT
chr21	26128824	26128825	chr21:26128825:T:C	rs2830073	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr21	26366087	26366088	chr21:26366088:C:T	rs62219377	C	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr21	26578957	26578958	chr21:26578958:G:A	rs59718907	G	A	A	Sox1.mouse_HMG_3	11	1	+	4.326756051386132	0.21691562040023404	TCATTACCATCGA
chr21	26642560	26642561	chr21:26642561:T:C	rs461377	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr21	26659656	26659657	chr21:26659657:T:A	rs226261	T	A	T	Sox1.mouse_HMG_3	2	1	-	4.872811159543058	-2.0359436197721608	TCACTGTCATTCT
chr21	26659666	26659667	chr21:26659667:A:G	rs756166	A	G	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr21	26837817	26837818	chr21:26837818:C:A	chr21:26837818:C:A	C	A	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr21	26846923	26846924	chr21:26846924:T:C	rs985049763	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr21	27369249	27369250	chr21:27369250:G:A	rs2830884	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr21	28109475	28109476	chr21:28109476:G:C	rs2037988	G	C	C	Sox1.mouse_HMG_3	7	1	-	4.7918239202432105	-2.0879124702214003	ACAATTTCCTTGA
chr21	28222461	28222462	chr21:28222462:T:C	rs439364	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr21	28224529	28224530	chr21:28224530:G:T	rs2831668	G	T	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr21	28436237	28436238	chr21:28436238:T:C	rs113362703	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr21	28605276	28605277	chr21:28605277:C:T	rs2831931	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr21	28637628	28637629	chr21:28637629:G:C	rs1153265	G	C	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr21	28749753	28749754	chr21:28749754:G:A	rs56103672	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr21	28754159	28754160	chr21:28754160:A:G	rs73186036	A	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr21	28754203	28754204	chr21:28754204:G:A	rs78394380	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr21	28762011	28762012	chr21:28762012:T:C	rs2832061	T	C	T	Sox1.mouse_HMG_3	0	1	+	4.276635658524961	-2.5755434835683237	TCTCTACCATTGT
chr21	28836691	28836692	chr21:28836692:G:A	rs60849436	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr21	29261831	29261832	chr21:29261832:A:T	rs142990591	A	T	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr21	29342276	29342277	chr21:29342277:G:A	rs411697	G	A	G	Sox1.mouse_HMG_3	1	1	-	10.47258441890598	5.514312187792354	TCAATTCCATTCA
chr21	29387149	29387150	chr21:29387150:G:A	rs7278255	G	A	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr21	29578487	29578488	chr21:29578488:T:G	rs138624436	T	G	T	Sox1.mouse_HMG_3	2	1	-	5.032441332750334	-1.8763134465648856	TCACTGGCCTTGA
chr21	29708639	29708640	chr21:29708640:T:C	rs2832431	T	C	C	Sox1.mouse_HMG_3	9	1	-	6.286959375332135	9.405793846020108	TCACTAGCAATGA
chr21	29827474	29827475	chr21:29827475:G:T	rs548005005	G	T	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr21	30718589	30718590	chr21:30718590:C:T	rs2833031	C	T	T	Sox1.mouse_HMG_3	7	1	+	4.7218403398367705	1.0893728487415788	TCAATGGCATTTC
chr21	30979280	30979281	chr21:30979281:C:G	rs75486310	C	G	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr21	31222173	31222174	chr21:31222174:C:T	rs77926910	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr21	31257289	31257290	chr21:31257290:G:C	rs76096786	G	C	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr21	31337119	31337120	chr21:31337120:C:T	rs2833380	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr21	31352421	31352422	chr21:31352422:A:G	rs9647143	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr21	31364065	31364066	chr21:31364066:T:C	rs150424142	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr21	31408572	31408573	chr21:31408573:T:G	rs117007720	T	G	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr21	31408594	31408595	chr21:31408595:G:A	rs57073567	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr21	31420602	31420603	chr21:31420603:G:T	rs7280668	G	T	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr21	31420613	31420614	chr21:31420614:C:T	rs2833404	C	T	T	Sox1.mouse_HMG_3	9	1	-	7.05655318931869	3.9377187186307148	ACACTAACAGTGA
chr21	31495498	31495499	chr21:31495499:C:T	rs4816399	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr21	31612784	31612785	chr21:31612785:T:C	rs111451448	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.492880942676994	-2.3940285651235147	TCAGTGACATTGG
chr21	31793020	31793021	chr21:31793021:T:C	rs2833509	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.136325169630318	-0.7505843381701902	TCACTCTCATTGT
chr21	31793644	31793645	chr21:31793645:C:T	rs9981074	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr21	31871109	31871110	chr21:31871110:G:A	rs6517062	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr21	31871116	31871117	chr21:31871117:T:G	rs74314710	T	G	T	Sox1.mouse_HMG_3	0	1	+	5.2041394745287075	-1.6480396675645774	TCTATTTCATTGT
chr21	32045920	32045921	chr21:32045921:A:G	rs73195447	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr21	32192400	32192401	chr21:32192401:C:T	rs78098177	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr21	32389311	32389312	chr21:32389312:A:G	rs28500491	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr21	32585233	32585234	chr21:32585234:C:T	rs2833917	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr21	33290811	33290812	chr21:33290812:A:G	rs2834174	A	G	-	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr21	33321335	33321336	chr21:33321336:C:T	rs73194016	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr21	33326079	33326080	chr21:33326080:C:A	rs12626750	C	A	C	Sox1.mouse_HMG_3	11	1	-	7.888174144541246	1.003871746933887	ACAATCTCATTGA
chr21	33417500	33417501	chr21:33417501:T:C	rs2834211	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr21	33492704	33492705	chr21:33492705:C:A	rs79777044	C	A	C	Sox1.mouse_HMG_3	1	1	+	7.626239274300426	0.7234864869410818	TCAACTTCATTGA
chr21	33685392	33685393	chr21:33685393:C:A	rs116262415	C	A	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr21	33762116	33762117	chr21:33762117:T:C	rs73199862	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr21	33844413	33844414	chr21:33844414:T:C	rs75628245	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.153481122085603	0.2665716142850949	ACAAATGCATTGA
chr21	34058615	34058616	chr21:34058616:A:G	rs2834374	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr21	34178457	34178458	chr21:34178458:T:A	rs13048855	T	A	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr21	34181656	34181657	chr21:34181657:A:G	rs55679440	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.2259847460434194	-1.5750424158735858	TCAATTTCACTGT
chr21	34256576	34256577	chr21:34256577:A:G	rs2834425	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr21	34335924	34335925	chr21:34335925:G:A	rs6517224	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr21	34552584	34552585	chr21:34552585:T:C	rs2247912	T	C	C	Sox1.mouse_HMG_3	8	1	-	8.238385949108538	1.3296311697933183	TCATTTCCATTGA
chr21	34558847	34558848	chr21:34558848:C:T	rs78984165	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr21	34558866	34558867	chr21:34558867:A:T	rs61645536	A	T	A	Sox1.mouse_HMG_3	0	1	-	4.848691847342998	2.0229352509863543	TGAATTCCATTGG
chr21	34605632	34605633	chr21:34605633:A:G	rs9305553	A	G	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr21	34713114	34713115	chr21:34713115:T:C	rs11911845	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr21	34752239	34752240	chr21:34752240:G:A	rs78167512	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.149968914391216	1.0401284834053186	TCAACAGCATTGG
chr21	34783120	34783121	chr21:34783121:T:G	rs186099645	T	G	T	Sox1.mouse_HMG_3	9	1	+	6.28864077333183	2.520565736219297	ACACTCACATTGA
chr21	34855235	34855236	chr21:34855236:A:C	rs140000309	A	C	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr21	34919930	34919931	chr21:34919931:A:C	rs10460712	A	C	C	Sox1.mouse_HMG_3	5	1	-	4.4141366374743285	3.9050467644894487	TCAATTACCGTGA
chr21	34997148	34997149	chr21:34997149:C:T	rs73900767	C	T	T	Sox1.mouse_HMG_3	3	1	+	8.649637014608244	4.012774381887663	TCACTGACAGTGA
chr21	35047872	35047873	chr21:35047873:C:A	rs138712577	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr21	35047902	35047903	chr21:35047903:T:G	rs77398576	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr21	35266817	35266818	chr21:35266818:C:T	chr21:35266818:C:T	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.179905889740008	1.547438398644816	TGAATGACATTGC
chr21	35266823	35266824	chr21:35266824:C:T	rs558316982	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr21	35283680	35283681	chr21:35283681:A:G	rs73901926	A	G	A	Sox1.mouse_HMG_3	5	1	+	7.9346712447048535	6.701998473637765	ACACTAGCATTGT
chr21	35617876	35617877	chr21:35617877:A:T	rs2142034	A	T	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr21	35643352	35643353	chr21:35643353:T:G	rs142124849	T	G	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr21	35834090	35834091	chr21:35834091:G:A	rs74276113	G	A	G	Sox1.mouse_HMG_3	7	1	-	9.800215472597756	6.167747981502563	ACAATTCCATTGT
chr21	35940026	35940027	chr21:35940027:G:A	rs1573304	G	A	G	Sox1.mouse_HMG_3	11	1	+	8.289939291985077	4.180098860999178	TCAGTTACATTGA
chr21	36479676	36479677	chr21:36479677:C:G	rs188733	C	G	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr21	36481023	36481024	chr21:36481024:G:C	rs115270476	G	C	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr21	36908518	36908519	chr21:36908519:T:C	rs115715506	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr21	37033329	37033330	chr21:37033330:A:G	rs9979148	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.921264903236915	1.1202377413199107	TCAATGCCATTAC
chr21	37324945	37324946	chr21:37324946:G:C	rs12626508	G	C	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr21	37463091	37463092	chr21:37463092:G:A	rs2186338	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr21	37463349	37463350	chr21:37463350:C:G	rs116610875	C	G	C	Sox1.mouse_HMG_3	7	1	+	4.718650194111307	-2.1610861963533052	TCACAGTCATTGC
chr21	37547031	37547032	chr21:37547032:A:G	rs111243825	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr21	37564739	37564740	chr21:37564740:G:A	rs140564833	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr21	37564741	37564742	chr21:37564742:C:T	rs1415094897	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr21	37983439	37983440	chr21:37983440:C:T	rs2836081	C	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr21	37985091	37985092	chr21:37985092:T:A	rs73208172	T	A	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr21	38261800	38261801	chr21:38261801:C:T	rs2836253	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr21	38313021	38313022	chr21:38313022:T:G	rs184703662	T	G	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr21	38313043	38313044	chr21:38313044:T:C	rs73423924	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr21	38323676	38323677	chr21:38323677:C:T	rs56154848	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr21	38747843	38747844	chr21:38747844:G:A	rs2836657	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr21	38757175	38757176	chr21:38757176:G:C	rs34092958	G	C	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr21	38800571	38800572	chr21:38800572:A:G	rs8133056	A	G	A	Sox1.mouse_HMG_3	2	1	+	12.625972068954397	5.717217289639178	TCAATTCCATTGT
chr21	38826075	38826076	chr21:38826076:G:C	rs2836685	G	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr21	38839435	38839436	chr21:38839436:G:A	rs16996874	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr21	38880202	38880203	chr21:38880203:C:G	rs992243	C	G	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr21	38990253	38990254	chr21:38990254:C:A	rs116594496	C	A	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr21	39014807	39014808	chr21:39014808:G:A	rs150618458	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr21	39094541	39094542	chr21:39094542:G:A	rs9808651	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr21	39098030	39098031	chr21:39098031:C:G	rs115372525	C	G	c	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr21	39113006	39113007	chr21:39113007:G:T	rs1882772	G	T	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr21	39189944	39189945	chr21:39189945:C:T	rs183073434	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr21	39251741	39251742	chr21:39251742:T:G	rs2836959	T	G	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr21	39350143	39350144	chr21:39350144:T:A	rs2239384	T	A	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr21	39371281	39371282	chr21:39371282:A:G	rs75502675	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr21	39445013	39445014	chr21:39445014:T:C	rs9983716	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr21	39445028	39445029	chr21:39445029:G:C	rs553420104	G	C	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr21	39483966	39483967	chr21:39483967:A:G	rs117345628	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.124364604737881	-1.7625449030626272	TAAATTTCATTGC
chr21	39598814	39598815	chr21:39598815:C:T	rs986883373	C	T	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr21	39769924	39769925	chr21:39769925:G:A	rs2837193	G	A	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr21	40014991	40014992	chr21:40014992:T:C	rs7283470	T	C	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr21	40015003	40015004	chr21:40015004:T:C	rs760168	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr21	40564294	40564295	chr21:40564295:T:C	rs17000004	T	C	t	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr21	40588222	40588223	chr21:40588223:T:C	rs467253	T	C	C	Sox1.mouse_HMG_3	10	1	+	5.179635583086469	0.5444227872818557	ACAATTGCATTAC
chr21	40679790	40679791	chr21:40679791:A:G	rs9975590	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.357763678138356	1.5567365162213513	TCAATAGCATTCT
chr21	41058083	41058084	chr21:41058084:A:C	rs2104809	A	C	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr21	41123775	41123776	chr21:41123776:T:A	rs112671966	T	A	T	Sox1.mouse_HMG_3	2	1	-	6.61388325530598	-0.2948715240092399	ACACTGTCATTGT
chr21	41147428	41147429	chr21:41147429:T:C	rs2837963	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr21	41147461	41147462	chr21:41147462:C:T	rs9982271	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr21	41237941	41237942	chr21:41237942:G:A	rs2837977	G	A	A	Sox1.mouse_HMG_3	0	1	+	4.376013839249884	8.402436384986526	GCAATAGCATTAA
chr21	41402613	41402614	chr21:41402614:A:G	rs466092	A	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr21	41405649	41405650	chr21:41405650:A:G	rs59998734	A	G	G	Sox1.mouse_HMG_3	9	1	-	5.466062687229593	-1.4208468205709157	TCACTGCCATGGA
chr21	41541334	41541335	chr21:41541335:G:T	rs73903421	G	T	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr21	41658688	41658689	chr21:41658689:T:C	rs2849687	T	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr21	41715384	41715385	chr21:41715385:G:C	rs4919931	G	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr21	41827058	41827059	chr21:41827059:A:G	rs28415259	A	G	G	Sox1.mouse_HMG_3	0	1	-	3.7658961999995735	-3.086282942093712	TCCCTAGCATTGC
chr21	41894755	41894756	chr21:41894756:T:C	rs2839410	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr21	41902880	41902881	chr21:41902881:T:C	rs426173	T	C	C	Sox1.mouse_HMG_3	8	1	-	3.9701775582924976	-2.938577221022723	TCATTAGCATTCA
chr21	41904145	41904146	chr21:41904146:C:T	rs7282728	C	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr21	42021904	42021905	chr21:42021905:G:A	rs529265696	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr21	42173468	42173469	chr21:42173469:A:C	chr21:42173469:A:C	A	C	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr21	42307434	42307435	chr21:42307435:T:C	rs118187505	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.342258740102814	-2.5664960392124065	TCAATGCCATGGG
chr21	42348087	42348088	chr21:42348088:C:G	rs2839486	C	G	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr21	42348089	42348090	chr21:42348090:T:G	rs73905603	T	G	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr21	42398680	42398681	chr21:42398681:A:G	rs9325634	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr21	42563318	42563319	chr21:42563319:G:A	rs17115129	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr21	42645595	42645596	chr21:42645596:G:A	rs181646040	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr21	42940145	42940146	chr21:42940146:T:C	rs115176444	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr21	42997512	42997513	chr21:42997513:A:G	rs2839615	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.894430578663734	-0.9924789291367748	TCACTGACATTAT
chr21	43018678	43018679	chr21:43018679:A:G	rs1672136	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.903520350250346	1.102493188333343	ACAATGTCATTGG
chr21	43267576	43267577	chr21:43267577:G:A	rs28620758	G	A	.	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr21	43267582	43267583	chr21:43267583:A:C	rs28758875	A	C	.	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr21	43311739	43311740	chr21:43311740:T:C	rs637345	T	C	.	Sox1.mouse_HMG_3	9	1	+	5.739355821053923	-1.147553686746584	ACACTGTCATTGG
chr21	43701360	43701361	chr21:43701361:C:T	rs12165286	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr21	43713008	43713009	chr21:43713009:T:C	rs76891477	T	C	T	Sox1.mouse_HMG_3	10	1	+	7.7056957349316395	3.070482939127025	TCCATTGCATTGA
chr21	43772138	43772139	chr21:43772139:A:C	rs9976143	A	C	A	Sox1.mouse_HMG_3	4	1	-	5.324293807990895	-1.575802213623751	TCAATTTCATCCA
chr21	43880156	43880157	chr21:43880157:T:A	rs147096178	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.3382707979772235	-2.570483981337997	TCAATTTCATGGG
chr21	44054240	44054241	chr21:44054241:G:A	rs1042119374	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr21	44344513	44344514	chr21:44344514:T:G	rs2838551	T	G	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr21	44447898	44447899	chr21:44447899:C:T	rs9978219	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.2317280092217775	1.599260518126584	TCACAGCCATTGC
chr21	44552708	44552709	chr21:44552709:C:T	rs146660912	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr21	44598138	44598139	chr21:44598139:A:G	rs443484	A	G	G	Sox1.mouse_HMG_3	5	1	+	6.650587410075598	5.41791463900851	TCACTAGCATTAT
chr21	44678182	44678183	chr21:44678183:A:G	rs73234839	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr21	44867252	44867253	chr21:44867253:G:T	rs73238101	G	T	G	Sox1.mouse_HMG_3	11	1	+	4.350034272916211	-2.5342681246911476	TCACTAACACTGT
chr21	45086063	45086064	chr21:45086064:A:C	rs870144	A	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr21	45248861	45248862	chr21:45248862:G:A	rs2838841	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr21	45248864	45248865	chr21:45248865:A:G	rs543299647	A	G	A	Sox1.mouse_HMG_3	10	1	-	6.335635873480372	1.7004230776757585	TTAATGACATTGG
chr21	45525844	45525845	chr21:45525845:C:T	rs374164733	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr21	45553533	45553534	chr21:45553534:C:T	rs1035184202	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr21	45561485	45561486	chr21:45561486:C:T	rs1810869	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr21	45767084	45767085	chr21:45767085:C:T	rs374848917	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr21	46096625	46096626	chr21:46096626:G:A	rs2156431	G	A	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr21	46132294	46132295	chr21:46132295:G:A	rs35548026	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr21	46475393	46475394	chr21:46475394:G:A	rs2839275	G	A	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr21	46515513	46515514	chr21:46515514:G:A	rs150870200	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr21	46546471	46546472	chr21:46546472:C:A	rs7275616	C	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr22	10716901	10716902	chr22:10716902:C:T	rs1253256349	C	T	.	Sox1.mouse_HMG_3	6	1	+	3.831809151008058	3.318731335897588	TCAATGCTATTCC
chr22	10716969	10716970	chr22:10716970:C:T	rs1384237270	C	T	.	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr22	10717059	10717060	chr22:10717060:G:C	chr22:10717060:G:C	G	C	.	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr22	10717061	10717062	chr22:10717062:C:T	rs878919857	C	T	.	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr22	10717147	10717148	chr22:10717148:C:A	rs905383993	C	A	.	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr22	10717193	10717194	chr22:10717194:T:C	rs962673475	T	C	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr22	10717762	10717763	chr22:10717763:C:A	rs1278079488	C	A	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr22	10721715	10721716	chr22:10721716:C:G	rs1227534642	C	G	.	Sox1.mouse_HMG_3	1	1	+	10.40420031522093	3.5014475278615866	TCAAATCCATTGA
chr22	10725734	10725735	chr22:10725735:C:T	rs1424777840	C	T	.	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr22	10727498	10727499	chr22:10727499:C:G	rs1414799421	C	G	.	Sox1.mouse_HMG_3	7	1	+	3.4954455359057106	-3.3842908545589006	TCCATTCCATCGA
chr22	10727616	10727617	chr22:10727617:G:C	rs1391364429	G	C	.	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr22	10727757	10727758	chr22:10727758:A:C	rs1467109072	A	C	.	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr22	15631571	15631572	chr22:15631572:C:T	rs8141338	C	T	.	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr22	15631579	15631580	chr22:15631580:T:A	rs61203019	T	A	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr22	15937055	15937056	chr22:15937056:A:T	rs1384470218	A	T	.	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr22	16267850	16267851	chr22:16267851:C:T	chr22:16267851:C:T	C	T	.	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr22	16447576	16447577	chr22:16447577:G:A	rs74499569	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr22	16824886	16824887	chr22:16824887:G:A	rs9606478	G	A	.	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr22	16851636	16851637	chr22:16851637:G:A	rs146550416	G	A	.	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr22	16917921	16917922	chr22:16917922:A:G	rs13058496	A	G	.	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr22	16967527	16967528	chr22:16967528:A:T	rs11704162	A	T	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr22	17061643	17061644	chr22:17061644:G:T	rs2845410	G	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr22	17106768	17106769	chr22:17106769:G:A	rs73381911	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr22	17106789	17106790	chr22:17106790:A:G	rs2241049	A	G	a	Sox1.mouse_HMG_3	2	1	+	4.395541517771441	-2.5132132615437777	CCAATAACATTCA
chr22	17329162	17329163	chr22:17329163:G:A	rs17808489	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr22	17350922	17350923	chr22:17350923:C:T	rs2040692	C	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr22	17381185	17381186	chr22:17381186:C:T	rs11089174	C	T	T	Sox1.mouse_HMG_3	1	1	+	9.115439515708912	4.157167284595285	ACACTGGCATTGA
chr22	17381713	17381714	chr22:17381714:G:A	rs5747086	G	A	G	Sox1.mouse_HMG_3	6	1	-	3.5511120011327537	3.038034186022283	ACAATACCACTGC
chr22	17381715	17381716	chr22:17381716:A:G	rs891748699	A	G	A	Sox1.mouse_HMG_3	4	1	-	3.5511120011327537	-3.3489840204818946	ACAATACCACTGC
chr22	17445082	17445083	chr22:17445083:G:A	rs5747151	G	A	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr22	17451225	17451226	chr22:17451226:T:G	rs5747164	T	G	G	Sox1.mouse_HMG_3	0	1	+	4.296778920157887	-2.555400221935397	TCACTTCAATTGG
chr22	17531009	17531010	chr22:17531010:A:G	rs9605317	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr22	17726729	17726730	chr22:17726730:A:G	rs73378798	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr22	17803959	17803960	chr22:17803960:T:C	rs187464145	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.341163414682061	1.5401362527650557	TCCATATCATTGA
chr22	17803964	17803965	chr22:17803965:C:T	rs73382727	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr22	17916209	17916210	chr22:17916210:A:C	rs5747411	A	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr22	17916240	17916241	chr22:17916241:G:A	rs5992902	G	A	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr22	17916250	17916251	chr22:17916251:G:A	rs5747413	G	A	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr22	17922542	17922543	chr22:17922543:C:T	rs9604806	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr22	17924973	17924974	chr22:17924974:C:T	rs75328607	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr22	17943820	17943821	chr22:17943821:C:T	chr22:17943821:C:T	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr22	18101821	18101822	chr22:18101822:G:A	rs17809734	G	A	G	Sox1.mouse_HMG_3	7	1	-	4.319438202027948	0.6869707109327567	TCAATAGCTTTAA
chr22	18150678	18150679	chr22:18150679:G:A	rs5993013	G	A	.	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr22	18950676	18950677	chr22:18950677:G:A	rs13054729	G	A	N	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr22	18950679	18950680	chr22:18950680:T:C	rs13056032	T	C	N	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr22	19063364	19063365	chr22:19063365:A:G	rs9617765	A	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr22	19075630	19075631	chr22:19075631:T:C	rs5993501	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr22	19620916	19620917	chr22:19620917:A:G	rs9618625	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr22	19622411	19622412	chr22:19622412:C:T	rs9618630	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr22	19622419	19622420	chr22:19622420:A:G	rs9617814	A	G	G	Sox1.mouse_HMG_3	5	1	+	8.744201778859892	7.511529007792804	ACAATAGCAGTGA
chr22	19648592	19648593	chr22:19648593:T:C	rs528176308	T	C	T	Sox1.mouse_HMG_3	10	1	+	8.934812961519679	4.299600165715065	TCAATAAGATTGA
chr22	19705804	19705805	chr22:19705805:G:A	rs59900889	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr22	19723281	19723282	chr22:19723282:C:T	rs185431344	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr22	19849167	19849168	chr22:19849168:C:T	rs76085291	C	T	C	Sox1.mouse_HMG_3	7	1	+	3.0423133019173654	-0.5901541891778275	TCACTTGCTTTGC
chr22	19849181	19849182	chr22:19849182:C:A	rs11705143	C	A	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr22	19870651	19870652	chr22:19870652:A:C	rs78190485	A	C	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr22	19910084	19910085	chr22:19910085:C:A	rs73880003	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr22	19998933	19998934	chr22:19998934:C:G	rs1008044760	C	G	C	Sox1.mouse_HMG_3	3	1	+	2.533223428932485	-2.103639203788097	TCACTGGCCTTGC
chr22	20000643	20000644	chr22:20000644:G:A	rs4819852	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr22	20028496	20028497	chr22:20028497:T:C	rs12483855	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr22	20419189	20419190	chr22:20419190:G:C	rs58803203	G	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr22	20419230	20419231	chr22:20419231:G:C	rs738088	G	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr22	20532134	20532135	chr22:20532135:C:T	rs114996979	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr22	20624100	20624101	chr22:20624101:C:G	rs73159169	C	G	c	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr22	20748684	20748685	chr22:20748685:G:A	rs738057	G	A	g	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr22	20763735	20763736	chr22:20763736:A:G	rs4822496	A	G	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr22	20764361	20764362	chr22:20764362:G:A	rs9917585	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr22	20857291	20857292	chr22:20857292:C:T	rs41281581	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr22	20980583	20980584	chr22:20980584:G:C	rs13057408	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr22	20980589	20980590	chr22:20980590:A:T	rs8137006	A	T	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr22	20985461	20985462	chr22:20985462:T:C	rs178285	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr22	21009879	21009880	chr22:21009880:C:T	rs994709831	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr22	21010559	21010560	chr22:21010560:T:C	rs395938	T	C	C	Sox1.mouse_HMG_3	4	1	+	4.8751495161281415	-2.0249465054865055	TCACTGGCATTCC
chr22	21010577	21010578	chr22:21010578:T:A	rs2516545	T	A	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr22	21033011	21033012	chr22:21033012:C:G	rs77165247	C	G	C	Sox1.mouse_HMG_3	11	1	-	3.5530527604427538	-1.0137759316768098	TCTCTTCCATTGT
chr22	21857590	21857591	chr22:21857591:T:C	rs11913120	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.440800187721386	-0.44610932007912196	TCCATACCATTGT
chr22	21866392	21866393	chr22:21866393:A:G	rs61762569	A	G	a	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr22	21899798	21899799	chr22:21899799:G:A	rs79497006	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr22	21906235	21906236	chr22:21906236:G:A	rs240049	G	A	A	Sox1.mouse_HMG_3	7	1	-	3.603574516004184	-0.02889297509100941	GCAAATACATTGA
chr22	22046143	22046144	chr22:22046144:G:C	rs61092423	G	C	c	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr22	22057356	22057357	chr22:22057357:T:C	rs9610936	T	C	t	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr22	22060418	22060419	chr22:22060419:G:A	rs5756711	G	A	a	Sox1.mouse_HMG_3	11	1	+	2.9134114489340477	-1.1964289820518506	ACATTTCCATTGC
chr22	22061343	22061344	chr22:22061344:C:T	rs12484080	C	T	c	Sox1.mouse_HMG_3	11	1	-	4.706046715829483	0.5962062848435847	TCAATGGCATAGC
chr22	22131255	22131256	chr22:22131256:A:C	chr22:22131256:A:C	A	C	.	Sox1.mouse_HMG_3	12	1	-	7.335470883606368	6.4609434493543105	TCAATTCAATTGT
chr22	22214282	22214283	chr22:22214283:C:T	rs111894887	C	T	.	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr22	22298803	22298804	chr22:22298804:C:G	rs963780097	C	G	.	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr22	22378690	22378691	chr22:22378691:G:C	rs528852095	G	C	.	Sox1.mouse_HMG_3	7	1	-	5.477439674520019	-1.4022967159445923	TCACTTCCATTAG
chr22	22571510	22571511	chr22:22571511:C:T	rs6002786	C	T	t	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr22	22632468	22632469	chr22:22632469:T:C	rs57741889	T	C	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr22	22753062	22753063	chr22:22753063:C:T	rs28370403	C	T	.	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr22	22753065	22753066	chr22:22753066:A:G	rs28398287	A	G	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr22	22812884	22812885	chr22:22812885:A:G	rs62218782	A	G	.	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr22	22813239	22813240	chr22:22813240:A:T	rs145360226	A	T	.	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr22	22902088	22902089	chr22:22902089:T:C	rs4822340	T	C	.	Sox1.mouse_HMG_3	3	1	-	4.847365205245339	-1.9536619566716662	ACCATGACATTGA
chr22	22909671	22909672	chr22:22909672:C:T	rs5759524	C	T	.	Sox1.mouse_HMG_3	7	1	+	7.617580516599855	3.985113025504661	TCTATTTCATTGA
chr22	22952565	22952566	chr22:22952566:C:A	rs546959547	C	A	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr22	23062135	23062136	chr22:23062136:C:T	rs57627935	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr22	23353216	23353217	chr22:23353217:T:C	rs4820550	T	C	t	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr22	23517508	23517509	chr22:23517509:G:T	rs114090144	G	T	g	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr22	23517552	23517553	chr22:23517553:T:A	rs184059905	T	A	t	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr22	23518183	23518184	chr22:23518184:G:A	rs73155066	G	A	g	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr22	23525573	23525574	chr22:23525574:G:C	rs147354058	G	C	g	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr22	23890537	23890538	chr22:23890538:G:A	rs7287669	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr22	23895674	23895675	chr22:23895675:T:G	rs2000466	T	G	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr22	23910632	23910633	chr22:23910633:C:T	rs7291874	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr22	23910654	23910655	chr22:23910655:T:C	rs5751770	T	C	T	Sox1.mouse_HMG_3	2	1	-	8.429278633013846	1.520523853698626	TCAATAGCCTTGA
chr22	24054571	24054572	chr22:24054572:A:G	rs2073396	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr22	24108002	24108003	chr22:24108003:C:A	rs142974005	C	A	C	Sox1.mouse_HMG_3	1	1	+	3.860331819446848	-3.042420967912496	TCACGAGCATTGT
chr22	24108023	24108024	chr22:24108024:C:T	rs176157	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr22	24445566	24445567	chr22:24445567:T:C	rs562548070	T	C	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr22	24631676	24631677	chr22:24631677:G:A	rs73879098	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr22	24772757	24772758	chr22:24772758:A:G	rs946677679	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr22	25085247	25085248	chr22:25085248:A:G	rs6004430	A	G	A	Sox1.mouse_HMG_3	8	1	+	7.481669400164904	0.5729146208496829	TCAAAGCCATTGT
chr22	25438374	25438375	chr22:25438375:C:T	rs5761069	C	T	-	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr22	25493189	25493190	chr22:25493190:T:C	rs11090398	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.905189316682984	-2.003565462632236	ACACAGCCATTGA
chr22	25493208	25493209	chr22:25493209:C:G	rs560918724	C	G	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr22	25511937	25511938	chr22:25511938:C:A	rs507715	C	A	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr22	25514876	25514877	chr22:25514877:G:C	rs686025	G	C	C	Sox1.mouse_HMG_3	7	1	-	5.878148086829897	-1.0015883036347135	TCACATACATTGT
chr22	25775795	25775796	chr22:25775796:C:T	rs116308924	C	T	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr22	25970019	25970020	chr22:25970020:A:G	rs114921896	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr22	25996267	25996268	chr22:25996268:A:G	rs5761347	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr22	26028437	26028438	chr22:26028438:G:A	rs16981230	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr22	26196941	26196942	chr22:26196942:G:C	rs1474602	G	C	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr22	26199571	26199572	chr22:26199572:C:T	rs9613126	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr22	26255799	26255800	chr22:26255800:T:C	rs737792	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr22	26265533	26265534	chr22:26265534:G:A	rs4640491	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr22	26362816	26362817	chr22:26362817:G:T	rs738405	G	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr22	26381828	26381829	chr22:26381829:A:T	rs482902	A	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr22	26394737	26394738	chr22:26394738:G:T	rs2331250	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr22	26555622	26555623	chr22:26555623:G:A	rs4820685	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr22	26597079	26597080	chr22:26597080:G:T	rs75422898	G	T	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr22	26642888	26642889	chr22:26642889:A:G	rs5761655	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr22	26642900	26642901	chr22:26642901:G:T	rs5752371	G	T	G	Sox1.mouse_HMG_3	9	1	+	4.108988983055276	7.877064020167811	ACAAAAGCAGTGA
chr22	26645345	26645346	chr22:26645346:C:T	rs190325753	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr22	26645378	26645379	chr22:26645379:C:T	rs866111829	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr22	26650697	26650698	chr22:26650698:A:T	rs4822760	A	T	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr22	26666073	26666074	chr22:26666074:T:C	rs1061540	T	C	C	Sox1.mouse_HMG_3	6	1	-	3.2141358205485075	2.737619880893284	ACACTTACACTGA
chr22	26725400	26725401	chr22:26725401:A:G	rs5761705	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr22	27070666	27070667	chr22:27070667:A:C	rs16986745	A	C	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr22	27097566	27097567	chr22:27097567:C:T	rs62222832	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr22	27225033	27225034	chr22:27225034:T:C	rs75860721	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr22	27251327	27251328	chr22:27251328:A:G	rs8142329	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr22	27370356	27370357	chr22:27370357:T:C	rs4820754	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.28198583927445	-1.6267689400407703	TCAACAATATTGA
chr22	27406469	27406470	chr22:27406470:A:G	rs16984531	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.315855034052511	0.6806422382478978	TCATTGCCATTGT
chr22	27446245	27446246	chr22:27446246:G:A	rs8139244	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr22	27510724	27510725	chr22:27510725:T:C	rs17465632	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr22	27510760	27510761	chr22:27510761:A:G	rs17465661	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr22	27513144	27513145	chr22:27513145:A:G	rs5762222	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr22	27527608	27527609	chr22:27527609:T:C	rs953825875	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr22	27671524	27671525	chr22:27671525:G:A	rs78260427	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr22	27758629	27758630	chr22:27758630:G:T	rs2267110	G	T	T	Sox1.mouse_HMG_3	11	1	+	2.6190002906791885	-4.265302106928171	TCCCTGGCATTGT
chr22	28012425	28012426	chr22:28012426:C:T	rs138671	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr22	28399091	28399092	chr22:28399092:T:C	rs2346395	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr22	28399093	28399094	chr22:28399094:T:C	rs142275913	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr22	28771342	28771343	chr22:28771343:T:C	rs76490143	T	C	T	Sox1.mouse_HMG_3	3	1	-	3.05473976660588	-3.7462873953111253	TCAATGCCCTTCA
chr22	28809015	28809016	chr22:28809016:G:A	rs5752803	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr22	29016938	29016939	chr22:29016939:C:G	rs114567405	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr22	29065161	29065162	chr22:29065162:T:A	rs134561	T	A	T	Sox1.mouse_HMG_3	6	1	-	6.2894484287511006	5.724817270764092	TTAATAACATTCA
chr22	29140354	29140355	chr22:29140355:C:T	rs9625721	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr22	29202830	29202831	chr22:29202831:C:T	rs73399038	C	T	C	Sox1.mouse_HMG_3	8	1	+	2.4970390667048887	2.4970390667048887	TCACTAGCCGTGA
chr22	29601584	29601585	chr22:29601585:T:C	rs715490	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.949673128262427	-0.9590816510527935	TCATTATCATTGC
chr22	29687224	29687225	chr22:29687225:G:C	rs117105323	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr22	29995000	29995001	chr22:29995001:T:C	rs3788423	T	C	C	Sox1.mouse_HMG_3	3	1	-	7.727541006446353	0.9265138445293462	TCAATTGCAATGA
chr22	30062403	30062404	chr22:30062404:T:A	rs73883363	T	A	-	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr22	30196925	30196926	chr22:30196926:C:T	rs149802821	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr22	30391200	30391201	chr22:30391201:T:C	rs61583714	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr22	30468804	30468805	chr22:30468805:C:T	rs2269962	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr22	30468829	30468830	chr22:30468830:A:G	rs2269963	A	G	A	Sox1.mouse_HMG_3	4	1	-	3.2119262661007713	-3.688169755513877	ACAATAGCACTGT
chr22	30535319	30535320	chr22:30535320:T:C	rs9608972	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr22	30535329	30535330	chr22:30535330:G:A	rs75871379	G	A	G	Sox1.mouse_HMG_3	5	1	+	2.533223428932485	3.7658961999995735	TCACTGGCTTTGC
chr22	30610564	30610565	chr22:30610565:G:A	rs5753233	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr22	30694256	30694257	chr22:30694257:G:C	rs79925406	G	C	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr22	30694257	30694258	chr22:30694258:T:C	rs558578607	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr22	30777965	30777966	chr22:30777966:A:T	rs75321327	A	T	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr22	30784690	30784691	chr22:30784691:G:A	rs12165718	G	A	g	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr22	30785747	30785748	chr22:30785748:T:C	rs136300	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr22	30824724	30824725	chr22:30824725:G:T	rs76915174	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr22	31231198	31231199	chr22:31231199:A:C	chr22:31231199:A:C	A	C	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr22	31633364	31633365	chr22:31633365:C:G	rs111697884	C	G	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr22	31633379	31633380	chr22:31633380:C:A	rs113992242	C	A	C	Sox1.mouse_HMG_3	12	1	+	2.5897990661544212	5.0890169699722705	CCACTGGCATTGC
chr22	31661586	31661587	chr22:31661587:T:C	rs75712797	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr22	32104070	32104071	chr22:32104071:G:A	rs12166759	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr22	32123822	32123823	chr22:32123823:A:C	rs117129307	A	C	A	Sox1.mouse_HMG_3	0	1	-	3.957233096885535	-2.894946045207749	TCAGTTTCAGTGA
chr22	32193102	32193103	chr22:32193103:C:T	rs8135276	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr22	32261505	32261506	chr22:32261506:T:C	rs5994517	T	C	N	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr22	32266586	32266587	chr22:32266587:C:T	rs59016399	C	T	c	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr22	32305952	32305953	chr22:32305953:T:G	rs9606935	T	G	t	Sox1.mouse_HMG_3	8	1	-	4.355445253916955	-2.5533095253982667	TCAATGCCAATGG
chr22	32305980	32305981	chr22:32305981:G:A	rs9609501	G	A	g	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr22	32322229	32322230	chr22:32322230:G:A	rs565326849	G	A	g	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr22	32344048	32344049	chr22:32344049:C:T	rs5749406	C	T	t	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr22	32344056	32344057	chr22:32344057:G:A	rs2076034	G	A	g	Sox1.mouse_HMG_3	12	1	-	2.966844783411744	3.0526216451584465	TCACTGCCATAGC
chr22	32512750	32512751	chr22:32512751:T:C	rs1056484	T	C	T	Sox1.mouse_HMG_3	6	1	+	3.683782973623664	4.196860788734135	TGACTATCATTGC
chr22	32540544	32540545	chr22:32540545:A:G	rs4821072	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr22	32836559	32836560	chr22:32836560:T:C	rs8142834	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr22	32951567	32951568	chr22:32951568:G:A	rs866064784	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr22	32951590	32951591	chr22:32951591:T:C	rs17779789	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr22	32977340	32977341	chr22:32977341:G:A	rs73162032	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr22	33013205	33013206	chr22:33013206:A:G	rs142875406	A	G	A	Sox1.mouse_HMG_3	9	1	-	3.459663559105318	-3.42724594869519	TGACTAACATTGG
chr22	33035178	33035179	chr22:33035179:G:A	rs8138938	G	A	A	Sox1.mouse_HMG_3	7	1	-	6.035449990009129	2.402982498913937	TCATTATCATTGT
chr22	33105908	33105909	chr22:33105909:A:G	rs5754430	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr22	33542741	33542742	chr22:33542742:G:A	rs569749131	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr22	33563756	33563757	chr22:33563757:G:A	rs62227071	G	A	G	Sox1.mouse_HMG_3	1	1	-	3.9377187186307148	-1.0205535124829113	ACACTAACAATGA
chr22	33577918	33577919	chr22:33577919:A:G	rs7290435	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr22	33626984	33626985	chr22:33626985:T:C	rs240589	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr22	33792958	33792959	chr22:33792959:T:C	rs57936677	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr22	33795895	33795896	chr22:33795896:G:A	rs12170014	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.528993017396557	1.8965255263013638	TCACTTACATTAG
chr22	34116133	34116134	chr22:34116134:A:G	rs5999208	A	G	G	Sox1.mouse_HMG_3	10	1	-	4.852128416204848	0.21691562040023404	TCAGTACCATTAA
chr22	34395745	34395746	chr22:34395746:T:C	rs34045827	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr22	34415055	34415056	chr22:34415056:G:A	rs9621935	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr22	34854495	34854496	chr22:34854496:A:G	rs7285148	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr22	35123856	35123857	chr22:35123857:C:T	rs2157592	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr22	35124890	35124891	chr22:35124891:T:C	rs56395426	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.609272739797124	-2.1917544221198817	TCAATGTCTTTGC
chr22	35192779	35192780	chr22:35192780:A:C	rs134431	A	C	A	Sox1.mouse_HMG_3	4	1	-	2.541882186633058	-4.358213834981589	TCACTGGCATGGC
chr22	35406667	35406668	chr22:35406668:C:G	rs2307340	C	G	C	Sox1.mouse_HMG_3	3	1	+	4.251070897355369	-0.3857917353652114	TCACCAACATTGC
chr22	35407607	35407608	chr22:35407608:A:G	rs4645766	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr22	35485487	35485488	chr22:35485488:T:C	rs28688703	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr22	35498388	35498389	chr22:35498389:C:T	rs117923678	C	T	C	Sox1.mouse_HMG_3	11	1	-	3.8205221672917706	-0.2893182636941276	TCCATGTCATTGG
chr22	35498400	35498401	chr22:35498401:A:G	rs7291777	A	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr22	35910335	35910336	chr22:35910336:C:T	rs145516367	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr22	35910545	35910546	chr22:35910546:G:T	rs5755990	G	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr22	36084236	36084237	chr22:36084237:G:T	rs116969389	G	T	g	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr22	36145295	36145296	chr22:36145296:C:T	rs149572043	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr22	36145676	36145677	chr22:36145677:G:T	rs1807672	G	T	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr22	36231146	36231147	chr22:36231147:C:T	rs9607326	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr22	36265599	36265600	chr22:36265600:G:A	rs136176	G	A	a	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr22	36329149	36329150	chr22:36329150:G:T	rs79296526	G	T	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr22	36329152	36329153	chr22:36329153:G:T	rs141486204	G	T	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr22	36528107	36528108	chr22:36528108:C:A	rs34387030	C	A	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr22	36856757	36856758	chr22:36856758:G:C	rs6000452	G	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr22	36880242	36880243	chr22:36880243:C:A	rs5750326	C	A	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr22	36950607	36950608	chr22:36950608:G:A	rs9622515	G	A	g	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr22	37168425	37168426	chr22:37168426:G:A	rs1023700820	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr22	37168436	37168437	chr22:37168437:G:A	rs4820269	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr22	37193677	37193678	chr22:37193678:G:A	rs189810126	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr22	37197458	37197459	chr22:37197459:G:A	rs78728597	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr22	37279868	37279869	chr22:37279869:A:C	rs142669033	A	C	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr22	37904959	37904960	chr22:37904960:A:T	rs4821723	A	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr22	38135527	38135528	chr22:38135528:G:A	rs867435302	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr22	38699647	38699648	chr22:38699648:T:C	rs149593440	T	C	T	Sox1.mouse_HMG_3	5	1	-	6.714529082303967	5.48185631123688	TCACTACCATTTA
chr22	38704640	38704641	chr22:38704641:A:G	rs41280833	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr22	38705195	38705196	chr22:38705196:C:T	rs8136675	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr22	39003732	39003733	chr22:39003733:T:C	rs4315626	T	C	N	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr22	39008538	39008539	chr22:39008539:G:T	rs146605820	G	T	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr22	39143262	39143263	chr22:39143263:G:T	rs5750754	G	T	G	Sox1.mouse_HMG_3	11	1	+	4.292427048379167	-2.5918753492281916	TCAAAAACAATGA
chr22	39178475	39178476	chr22:39178476:C:T	rs117362372	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr22	39200283	39200284	chr22:39200284:A:G	rs62228334	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr22	39304752	39304753	chr22:39304753:C:T	rs17000979	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr22	39601624	39601625	chr22:39601625:C:T	rs713865	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr22	39734909	39734910	chr22:39734910:C:G	rs6001666	C	G	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr22	39929156	39929157	chr22:39929157:C:T	rs137980	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr22	40058064	40058065	chr22:40058065:T:G	rs7291691	T	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr22	40208940	40208941	chr22:40208941:T:G	rs4820408	T	G	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr22	40213644	40213645	chr22:40213645:A:G	rs74893831	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr22	40412671	40412672	chr22:40412672:A:T	rs73167027	A	T	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr22	40414432	40414433	chr22:40414433:T:C	rs9611342	T	C	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr22	40414437	40414438	chr22:40414438:T:C	rs9611343	T	C	C	Sox1.mouse_HMG_3	4	1	+	5.025126763244572	-1.874969258370076	ACACTGACATTCA
chr22	40621420	40621421	chr22:40621421:C:T	rs6001981	C	T	T	Sox1.mouse_HMG_3	6	1	+	4.22768719168849	3.71460937657802	TCAAAACCATAGA
chr22	41074308	41074309	chr22:41074309:A:G	rs5758212	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.850604268564785	-1.0015748735284988	TCAAGATCATTGC
chr22	41445730	41445731	chr22:41445731:C:T	rs10212032	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr22	41664621	41664622	chr22:41664622:C:G	rs17002541	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr22	41826462	41826463	chr22:41826463:C:A	rs191226652	C	A	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr22	41826469	41826470	chr22:41826470:T:C	rs150841972	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr22	41919366	41919367	chr22:41919367:C:T	rs73165129	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr22	41963788	41963789	chr22:41963789:G:A	rs8137409	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr22	41966555	41966556	chr22:41966556:A:G	rs4822075	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.88858557487535	-0.9983239329251583	ACAAAACCATTGT
chr22	42022105	42022106	chr22:42022106:T:A	rs9607869	T	A	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr22	42039484	42039485	chr22:42039485:G:A	rs188913591	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr22	42090313	42090314	chr22:42090314:A:G	rs746736649	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr22	42152888	42152889	chr22:42152889:A:G	rs2743467	A	G	G	Sox1.mouse_HMG_3	9	1	-	2.7351009634126338	-4.151808544387874	CCACTTCCATTGG
chr22	42375184	42375185	chr22:42375185:G:A	rs116303316	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr22	42644786	42644787	chr22:42644787:G:A	rs763063	G	A	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr22	42677024	42677025	chr22:42677025:C:T	rs17003208	C	T	C	Sox1.mouse_HMG_3	9	1	-	4.198245102031761	1.0794106313437868	TTAATAGCAGTGT
chr22	42687038	42687039	chr22:42687039:C:A	rs130389	C	A	A	Sox1.mouse_HMG_3	11	1	-	8.914453330369643	2.030150932762283	TCAAGAACATTGA
chr22	42768126	42768127	chr22:42768127:C:T	rs75803153	C	T	c	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr22	42780166	42780167	chr22:42780167:T:C	rs925577509	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.065611483499831	-1.8212980243006769	ACAAAAACATTGG
chr22	42791824	42791825	chr22:42791825:C:T	rs187658869	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr22	42927177	42927178	chr22:42927178:G:C	rs75626753	G	C	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr22	43005072	43005073	chr22:43005073:G:A	rs5759082	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr22	43011457	43011458	chr22:43011458:C:T	rs5759091	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr22	43018721	43018722	chr22:43018722:C:T	rs118178599	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr22	43095536	43095537	chr22:43095537:T:C	rs60537553	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr22	43110628	43110629	chr22:43110629:C:T	rs4988372	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr22	43460745	43460746	chr22:43460746:T:C	rs34401744	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr22	43745392	43745393	chr22:43745393:C:T	rs10483220	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr22	43890435	43890436	chr22:43890436:T:C	rs713831	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr22	43915820	43915821	chr22:43915821:G:A	rs9917616	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr22	44366876	44366877	chr22:44366877:C:G	rs79282335	C	G	C	Sox1.mouse_HMG_3	11	1	-	3.6777809816677878	-0.8890477104517758	TCACTATCTTTGC
chr22	44366881	44366882	chr22:44366882:A:G	rs59632281	A	G	A	Sox1.mouse_HMG_3	6	1	-	3.6777809816677878	4.190858796778258	TCACTATCTTTGC
chr22	44403368	44403369	chr22:44403369:A:T	rs713828	A	T	A	Sox1.mouse_HMG_3	4	1	-	2.5897990661544212	-2.0454137296501926	GCACTGGCATTGC
chr22	44404133	44404134	chr22:44404134:C:T	rs12106627	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr22	44419178	44419179	chr22:44419179:T:C	rs72619565	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr22	44537196	44537197	chr22:44537197:T:A	rs6007188	T	A	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr22	44538106	44538107	chr22:44538107:C:T	rs2076096	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr22	44538128	44538129	chr22:44538129:G:C	rs2076097	G	C	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr22	44552027	44552028	chr22:44552028:A:G	rs2349628	A	G	G	Sox1.mouse_HMG_3	8	1	+	2.533223428932486	-4.375531350382735	TCCCTGGCATTGC
chr22	44747787	44747788	chr22:44747788:A:T	rs9614566	A	T	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr22	44796740	44796741	chr22:44796741:A:G	rs9626245	A	G	a	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr22	44796779	44796780	chr22:44796780:G:A	rs1001728	G	A	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr22	44838858	44838859	chr22:44838859:A:G	rs4823393	A	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr22	44838874	44838875	chr22:44838875:A:G	rs4823261	A	G	a	Sox1.mouse_HMG_3	8	1	+	4.441327599800456	-2.4674271795147646	TCAGTGCCATTGG
chr22	44857891	44857892	chr22:44857892:C:T	rs7291353	C	T	c	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr22	44857892	44857893	chr22:44857893:G:A	rs71328677	G	A	g	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr22	44877172	44877173	chr22:44877173:C:T	rs113832116	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr22	44909975	44909976	chr22:44909976:C:T	rs9626258	C	T	C	Sox1.mouse_HMG_3	10	1	-	2.6871840838912706	2.6871840838912706	TCACTTCCATGGG
chr22	44916010	44916011	chr22:44916011:G:A	rs2239792	G	A	G	Sox1.mouse_HMG_3	6	1	-	3.74868026455839	3.2356024494479194	TTAATACCAGTGG
chr22	45041210	45041211	chr22:45041211:G:T	rs132045	G	T	t	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr22	45082458	45082459	chr22:45082459:T:C	rs13056578	T	C	T	Sox1.mouse_HMG_3	8	1	-	3.4954455359057106	-3.413309243409509	TCTAATCCATTGA
chr22	45158925	45158926	chr22:45158926:T:C	rs866223223	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.561407189466353	-0.07380560633826105	TCAATATTAGTGG
chr22	45158928	45158929	chr22:45158929:C:T	rs73432244	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr22	45158931	45158932	chr22:45158932:T:G	chr22:45158932:T:G	T	G	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr22	45318168	45318169	chr22:45318169:A:C	rs16993817	A	C	A	Sox1.mouse_HMG_3	12	1	-	3.876125443454137	3.001598009202081	TCACTAGCATTTT
chr22	45339859	45339860	chr22:45339860:T:C	rs998705	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr22	45469749	45469750	chr22:45469750:T:A	rs2072771	T	A	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr22	45513536	45513537	chr22:45513537:T:C	rs6007073	T	C	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr22	45528213	45528214	chr22:45528214:C:T	rs136732	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr22	45528231	45528232	chr22:45528232:T:C	rs136733	T	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr22	45540291	45540292	chr22:45540292:G:T	rs136754	G	T	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr22	45572583	45572584	chr22:45572584:G:C	rs138824187	G	C	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr22	45572607	45572608	chr22:45572608:G:A	rs4393839	G	A	A	Sox1.mouse_HMG_3	3	1	-	5.990946184221761	1.3540835515011795	TCACTTCCATTTA
chr22	45584237	45584238	chr22:45584238:C:T	rs57494862	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr22	45603118	45603119	chr22:45603119:G:A	rs181362131	G	A	G	Sox1.mouse_HMG_3	5	1	+	5.317504870968479	6.550177642035566	TCACTGCCATCGT
chr22	45748651	45748652	chr22:45748652:G:A	rs186126551	G	A	-	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr22	45864135	45864136	chr22:45864136:C:T	chr22:45864136:C:T	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr22	45864138	45864139	chr22:45864139:G:A	rs188055281	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr22	45880687	45880688	chr22:45880688:C:G	rs79491787	C	G	C	Sox1.mouse_HMG_3	5	1	+	4.31825377669314	7.621568458725443	TCGATCCCATTGA
chr22	45993929	45993930	chr22:45993930:G:A	rs28394489	G	A	a	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr22	45995814	45995815	chr22:45995815:C:T	rs28419158	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr22	46241078	46241079	chr22:46241079:G:A	rs41378347	G	A	G	Sox1.mouse_HMG_3	10	1	-	4.511875614343738	9.147088410148353	TTAATGGCATCGA
chr22	46256206	46256207	chr22:46256207:T:G	rs6008357	T	G	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr22	46625305	46625306	chr22:46625306:T:G	rs138481	T	G	T	Sox1.mouse_HMG_3	8	1	-	5.2454471529547515	-1.6633076263604694	TCATTAACAGTGA
chr22	46625328	46625329	chr22:46625329:A:G	rs9615396	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr22	46854707	46854708	chr22:46854708:G:C	rs6008994	G	C	c	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr22	46854738	46854739	chr22:46854739:G:A	rs6008995	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr22	46929296	46929297	chr22:46929297:G:A	rs2064165	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr22	46932687	46932688	chr22:46932688:A:G	rs9616163	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr22	47030575	47030576	chr22:47030576:C:T	rs138586583	C	T	C	Sox1.mouse_HMG_3	7	1	+	3.580820072494579	-0.05164741860061395	ACAATAACGTTGC
chr22	47045527	47045528	chr22:47045528:T:C	rs131900	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.395140155071182	-2.513614624244038	TCATTACCATTCA
chr22	47107467	47107468	chr22:47107468:T:C	rs737780	T	C	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr22	47164613	47164614	chr22:47164614:C:T	rs186157435	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr22	47197662	47197663	chr22:47197663:A:G	rs9626698	A	G	A	Sox1.mouse_HMG_3	12	1	+	4.852529778905107	1.5645613025819047	GCAATAACATTAA
chr22	47203592	47203593	chr22:47203593:A:T	rs185217234	A	T	A	Sox1.mouse_HMG_3	0	1	-	4.787034297796355	1.9612777014397138	TCACTGTCATTCC
chr22	47261526	47261527	chr22:47261527:T:A	rs136634	T	A	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr22	47353946	47353947	chr22:47353947:G:C	rs5767706	G	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr22	47695043	47695044	chr22:47695044:C:T	rs6008323	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr22	47808201	47808202	chr22:47808202:G:A	rs147948139	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr22	47892018	47892019	chr22:47892019:A:T	rs9615660	A	T	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr22	48055612	48055613	chr22:48055613:G:A	rs9626803	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr22	48115135	48115136	chr22:48115136:C:T	rs73184781	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr22	48272221	48272222	chr22:48272222:A:G	rs133590	A	G	G	Sox1.mouse_HMG_3	9	1	-	6.072413228164637	-0.8144962796358717	CCAATAGCATTGT
chr22	48340833	48340834	chr22:48340834:G:C	rs732348	G	C	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr22	48380059	48380060	chr22:48380060:A:G	rs130767	A	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr22	48473919	48473920	chr22:48473920:C:T	rs715520	C	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr22	48556853	48556854	chr22:48556854:A:G	rs133457	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr22	48607000	48607001	chr22:48607001:C:T	rs28533693	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr22	48607008	48607009	chr22:48607009:A:C	rs28410043	A	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr22	48695417	48695418	chr22:48695418:T:C	rs910572	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr22	48732210	48732211	chr22:48732211:G:T	rs6010502	G	T	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr22	48829327	48829328	chr22:48829328:A:G	rs7288714	A	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr22	48943422	48943423	chr22:48943423:A:G	rs4607042	A	G	G	Sox1.mouse_HMG_3	5	1	-	3.7231105998655125	-0.0892939551516716	TCATTTACATTCA
chr22	49026260	49026261	chr22:49026261:G:A	rs5769384	G	A	A	Sox1.mouse_HMG_3	3	1	-	5.903946679266815	1.2670840465462325	ACACTTTTATTGA
chr22	49026262	49026263	chr22:49026263:G:A	rs5769385	G	A	A	Sox1.mouse_HMG_3	1	1	-	5.903946679266815	0.945674448153188	ACACTTTTATTGA
chr22	49027895	49027896	chr22:49027896:G:A	rs9627810	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr22	49067852	49067853	chr22:49067853:G:A	rs79123107	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr22	49140664	49140665	chr22:49140665:G:A	rs5769932	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr22	49298791	49298792	chr22:49298792:G:C	rs5770213	G	C	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr22	49321419	49321420	chr22:49321420:A:T	rs848769	A	T	T	Sox1.mouse_HMG_3	9	1	-	4.5497441834916685	-2.3371653243088386	TCAATTATCTTGA
chr22	49337270	49337271	chr22:49337271:G:A	rs5769568	G	A	g	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr22	49337291	49337292	chr22:49337292:A:G	rs11702899	A	G	a	Sox1.mouse_HMG_3	6	1	-	5.392588316529688	5.905666131640158	TCAATATAATTCA
chr22	49337313	49337314	chr22:49337314:C:G	rs848740	C	G	c	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr22	49760605	49760606	chr22:49760606:A:G	rs114110755	A	G	a	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr22	49774003	49774004	chr22:49774004:T:C	rs4468	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr22	49784433	49784434	chr22:49784434:A:G	rs138832	A	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr22	49897954	49897955	chr22:49897955:G:A	rs73443931	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr22	50082700	50082701	chr22:50082701:A:G	rs2235352	A	G	G	Sox1.mouse_HMG_3	8	1	+	6.050548307883615	-0.8582064714316056	TCACTCTCATTGC
chr22	50185585	50185586	chr22:50185586:A:C	rs1431265171	A	C	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr22	50289352	50289353	chr22:50289353:G:A	rs62241207	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr22	50289362	50289363	chr22:50289363:T:C	rs28573806	T	C	C	Sox1.mouse_HMG_3	3	1	-	9.9634945459211	3.162467384004094	TCAATGCCATTCA
chr22	50289364	50289365	chr22:50289365:G:A	rs145322724	G	A	G	Sox1.mouse_HMG_3	1	1	-	9.9634945459211	5.005222314807474	TCAATGCCATTCA
chr22	50435188	50435189	chr22:50435189:A:G	rs2273257	A	G	A	Sox1.mouse_HMG_3	6	1	-	5.585787952803386	6.098865767913857	TCACTGTCAGTGC
chr22	50435214	50435215	chr22:50435215:G:A	rs2273258	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr22	50443908	50443909	chr22:50443909:G:A	rs56269507	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr22	50622770	50622771	chr22:50622771:G:T	rs11704557	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	292823	292824	chr3:292824:T:C	rs11715973	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	663609	663610	chr3:663610:T:G	rs2627977	T	G	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	1087511	1087512	chr3:1087512:G:C	rs73103453	G	C	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	1190539	1190540	chr3:1190540:T:A	rs2130279	T	A	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	1270057	1270058	chr3:1270058:A:G	rs7621594	A	G	G	Sox1.mouse_HMG_3	6	1	+	10.5753517135565	10.098835773901278	ACAATAACATTGT
chr3	1272343	1272344	chr3:1272344:C:G	rs17036955	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	1395199	1395200	chr3:1395200:A:G	rs17038614	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	1531464	1531465	chr3:1531465:C:G	rs73001650	C	G	G	Sox1.mouse_HMG_3	11	1	-	5.216786174354869	0.649957482235306	TCAAGGCCATTGT
chr3	1907909	1907910	chr3:1907910:T:G	rs9821217	T	G	G	Sox1.mouse_HMG_3	2	1	-	8.155110713418184	1.2463559341029655	TCAATTCCATTTA
chr3	1962757	1962758	chr3:1962758:T:G	rs2129995	T	G	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	1962760	1962761	chr3:1962761:C:T	rs2129994	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	2177636	2177637	chr3:2177637:A:G	rs115249398	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.113283483328514	0.47807068752390025	ACAATCCCATTGG
chr3	2207227	2207228	chr3:2207228:T:C	rs1153540	T	C	T	Sox1.mouse_HMG_3	9	1	+	9.356325264532455	2.469415756731947	ACAATAATATTGA
chr3	2617072	2617073	chr3:2617073:G:A	rs62232690	G	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	2897127	2897128	chr3:2897128:A:G	rs73005472	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	2947957	2947958	chr3:2947958:T:C	rs876255	T	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	2992671	2992672	chr3:2992672:A:C	rs973593	A	C	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	2992689	2992690	chr3:2992690:A:G	rs973594	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.430376535716743	-1.478378243598478	TCACTCCTATTGA
chr3	3038824	3038825	chr3:3038825:C:T	rs7648232	C	T	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	3038842	3038843	chr3:3038843:C:T	rs163543	C	T	T	Sox1.mouse_HMG_3	9	1	-	8.594095729606115	5.475261258918142	TCACTTTCAGTGA
chr3	3359654	3359655	chr3:3359655:A:G	rs6782604	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	3655188	3655189	chr3:3655189:T:C	rs9873276	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.052937015143749	-0.8339724926567569	ACAATACCATTTA
chr3	3771808	3771809	chr3:3771809:A:G	rs115274801	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	3771811	3771812	chr3:3771812:G:A	rs148304528	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	3778832	3778833	chr3:3778833:C:T	rs6442831	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	4198162	4198163	chr3:4198163:C:T	rs1444058	C	T	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	4322865	4322866	chr3:4322866:T:A	rs74927171	T	A	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	4340972	4340973	chr3:4340973:T:C	rs62259857	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.1894154306266085	-0.6974940771738989	ACACAAACATTGA
chr3	4340990	4340991	chr3:4340991:A:T	rs9847079	A	T	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	4351101	4351102	chr3:4351102:T:C	rs11928114	T	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	4351134	4351135	chr3:4351135:G:C	rs7638573	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	4472123	4472124	chr3:4472124:A:G	rs2819577	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr3	4507283	4507284	chr3:4507284:A:G	rs114506187	A	G	A	Sox1.mouse_HMG_3	4	1	-	9.700824279304443	2.8007282576897974	ACAATAACATTGG
chr3	4582773	4582774	chr3:4582774:G:T	rs7642352	G	T	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	4656242	4656243	chr3:4656243:A:G	rs12486970	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.179635583086469	-1.7072739247140376	ACAATTGCATTAC
chr3	4656261	4656262	chr3:4656262:C:G	rs765636821	C	G	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	4767018	4767019	chr3:4767019:G:A	rs2291863	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	4827905	4827906	chr3:4827906:A:G	rs3805025	A	G	A	Sox1.mouse_HMG_3	3	1	+	9.547256411053906	2.7462292491369023	TCAATAACAGTGC
chr3	4977893	4977894	chr3:4977894:G:T	rs867893	G	T	T	Sox1.mouse_HMG_3	7	1	-	7.154622022730301	1.8641208373822713	TTAATTTCATTGT
chr3	6066857	6066858	chr3:6066858:T:C	rs57465575	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	6080613	6080614	chr3:6080614:A:G	rs1156715284	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	6098983	6098984	chr3:6098984:G:A	rs9821638	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr3	6133127	6133128	chr3:6133128:C:T	rs9311801	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	6238361	6238362	chr3:6238362:A:C	rs62244874	A	C	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr3	6431664	6431665	chr3:6431665:A:C	rs156815	A	C	C	Sox1.mouse_HMG_3	0	1	-	7.4642766421032505	0.6120975000099667	TCAATGCCATTCC
chr3	6642796	6642797	chr3:6642797:A:T	rs191605	A	T	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	6833131	6833132	chr3:6833132:A:G	rs437555	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	7100539	7100540	chr3:7100540:T:C	rs9837834	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	7190172	7190173	chr3:7190173:A:T	rs13326811	A	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr3	7352928	7352929	chr3:7352929:C:T	rs73113780	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	7475602	7475603	chr3:7475603:T:C	rs1391902	T	C	T	Sox1.mouse_HMG_3	3	1	-	9.220717718515115	2.419690556598108	ACAATAACAGTGA
chr3	7659301	7659302	chr3:7659302:G:A	rs73023704	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	7779592	7779593	chr3:7779593:T:C	rs55804114	T	C	T	Sox1.mouse_HMG_3	0	1	-	5.45623330253669	1.4298107568000469	ACAATAGCAGTGG
chr3	7897867	7897868	chr3:7897868:C:T	rs36084967	C	T	C	Sox1.mouse_HMG_3	1	1	+	6.615179465870623	1.6569072347569977	TCACTCACATTGC
chr3	7924627	7924628	chr3:7924628:C:T	rs6782967	C	T	T	Sox1.mouse_HMG_3	7	1	+	5.847947502820089	2.2154800117248956	TAAATATCATTGC
chr3	7960982	7960983	chr3:7960983:G:A	rs12485725	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	8041074	8041075	chr3:8041075:C:G	rs12632604	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	8041114	8041115	chr3:8041115:C:A	rs28532864	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	8494150	8494151	chr3:8494151:G:T	rs112522354	G	T	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	8499683	8499684	chr3:8499684:C:T	rs9821915	C	T	T	Sox1.mouse_HMG_3	1	1	+	5.14637829325711	0.1881060621434829	TCAACAACAGTGA
chr3	8504415	8504416	chr3:8504416:G:A	rs9312023	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	8532359	8532360	chr3:8532360:C:G	rs189185606	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	8900921	8900922	chr3:8900922:G:T	rs373090	G	T	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	8937344	8937345	chr3:8937345:C:T	rs78587561	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	8963065	8963066	chr3:8963066:C:T	rs45585931	C	T	C	Sox1.mouse_HMG_3	11	1	-	6.088696734013	1.9788563030271016	ACAATAACATGGA
chr3	9028810	9028811	chr3:9028811:T:C	rs370526	T	C	C	Sox1.mouse_HMG_3	9	1	+	5.005599084723014	-1.881310423077494	ACACTGGCATTAA
chr3	9169682	9169683	chr3:9169683:A:G	rs986120	A	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	9703358	9703359	chr3:9703359:C:T	rs7618350	C	T	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	9931196	9931197	chr3:9931197:G:A	rs111888336	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	10279832	10279833	chr3:10279833:G:A	rs10285	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	10311018	10311019	chr3:10311019:C:T	rs3952701	C	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	10551460	10551461	chr3:10551461:C:T	rs553352558	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr3	10553407	10553408	chr3:10553408:T:C	rs1009398193	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	10570949	10570950	chr3:10570950:G:C	rs35944049	G	C	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr3	10833432	10833433	chr3:10833433:G:A	rs1905756	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.032441332750334	1.3999738416551415	TCCCTGGCATTGA
chr3	11050199	11050200	chr3:11050200:G:T	rs3856788	G	T	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	11350670	11350671	chr3:11350671:A:G	rs117138184	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr3	11580837	11580838	chr3:11580838:G:A	rs17608993	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	11588777	11588778	chr3:11588778:G:T	rs12633841	G	T	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	11600190	11600191	chr3:11600191:A:C	rs73025163	A	C	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	11604613	11604614	chr3:11604614:G:C	rs79617729	G	C	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	11703424	11703425	chr3:11703425:C:G	rs36068197	C	G	C	Sox1.mouse_HMG_3	3	1	+	9.830756442798794	5.1938938100782135	TCACTACCAGTGA
chr3	11817989	11817990	chr3:11817990:C:A	rs114505442	C	A	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	11944166	11944167	chr3:11944167:C:G	rs12629709	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	12197091	12197092	chr3:12197092:A:G	rs1033426885	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.1938938100782135	-1.6582853320150703	TCATTACCAGTGA
chr3	12273346	12273347	chr3:12273347:G:A	rs4279078	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	12489921	12489922	chr3:12489922:G:A	rs12495784	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	12513993	12513994	chr3:12513994:C:T	rs116103198	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.712899490971386	2.0804319998761933	ACACAAGCATTGA
chr3	12741540	12741541	chr3:12741541:A:G	rs113350314	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.68899576272489	-1.197913745075619	TAAATTACATTGC
chr3	12973493	12973494	chr3:12973494:T:C	rs12492009	T	C	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	13112444	13112445	chr3:13112445:C:T	rs141620662	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	13112462	13112463	chr3:13112463:G:A	rs185156897	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	13216989	13216990	chr3:13216990:C:T	rs12632077	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	13277159	13277160	chr3:13277160:C:T	rs630814	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	13277203	13277204	chr3:13277204:A:C	rs191561006	A	C	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	13292616	13292617	chr3:13292617:G:A	rs7636814	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	13292624	13292625	chr3:13292625:A:G	rs73016868	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	13292642	13292643	chr3:13292643:T:C	rs7648308	T	C	C	Sox1.mouse_HMG_3	3	1	-	4.50391177927912	-2.2971153826378843	TCAATAGCAGTCC
chr3	13308047	13308048	chr3:13308048:T:C	rs477780	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	13546626	13546627	chr3:13546627:T:C	rs55639070	T	C	C	Sox1.mouse_HMG_3	9	1	+	6.607141965912847	-0.2797675418876604	TCAAAGCCATTGG
chr3	13726252	13726253	chr3:13726253:A:C	rs4685001	A	C	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr3	13754179	13754180	chr3:13754180:T:C	rs7634577	T	C	T	Sox1.mouse_HMG_3	12	1	-	6.034486625391764	2.7465181490685615	AAAATACCATTGA
chr3	13816471	13816472	chr3:13816472:T:C	rs1124480	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr3	14179289	14179290	chr3:14179290:A:G	rs183978821	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.95674265955952	-1.952012119755699	ACACTGACATCGA
chr3	14397583	14397584	chr3:14397584:A:G	rs79335164	A	G	a	Sox1.mouse_HMG_3	4	1	-	3.7877414715142863	-3.1123545501003624	TCACTAGCACTGC
chr3	14520399	14520400	chr3:14520400:C:T	rs770879779	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	14520400	14520401	chr3:14520401:G:A	rs61731940	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	14787773	14787774	chr3:14787774:T:C	rs13080265	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	14948871	14948872	chr3:14948872:G:T	rs4093173	G	T	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	14948877	14948878	chr3:14948878:G:A	rs75343838	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	15205380	15205381	chr3:15205381:C:T	rs528413232	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	15361022	15361023	chr3:15361023:G:A	rs73816889	G	A	G	Sox1.mouse_HMG_3	5	1	-	5.0454924768246805	8.857897031841864	TCAATCCCAGTGT
chr3	15372412	15372413	chr3:15372413:A:T	rs6807185	A	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	15517444	15517445	chr3:15517445:G:T	rs78868657	G	T	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	15519207	15519208	chr3:15519208:T:C	rs114071457	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	15581563	15581564	chr3:15581564:G:T	rs6794169	G	T	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	15602687	15602688	chr3:15602688:G:A	rs73030389	G	A	G	Sox1.mouse_HMG_3	12	1	-	6.607955640898737	6.693732502645441	TCACTTCCAGTGC
chr3	15635306	15635307	chr3:15635307:C:T	rs141803585	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	15708836	15708837	chr3:15708837:A:C	rs2470514	A	C	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	15753059	15753060	chr3:15753060:T:C	rs111699587	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	16152009	16152010	chr3:16152010:A:G	rs2657589	A	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	16271056	16271057	chr3:16271057:C:T	rs842259	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	16463049	16463050	chr3:16463050:C:T	rs17042294	C	T	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	16521498	16521499	chr3:16521499:T:C	rs1529513	T	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	16740104	16740105	chr3:16740105:G:C	rs9817635	G	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	16759644	16759645	chr3:16759645:G:A	rs116583336	G	A	g	Sox1.mouse_HMG_3	3	1	-	5.45740392952902	0.820541296808438	TCTCTGCCATTGA
chr3	16941280	16941281	chr3:16941281:A:T	rs78222630	A	T	A	Sox1.mouse_HMG_3	2	1	+	5.73906256115389	-1.1696922181613296	TCAATTCCACTGT
chr3	16978364	16978365	chr3:16978365:C:T	rs7653027	C	T	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	17193997	17193998	chr3:17193998:G:A	rs2596656	G	A	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	17233587	17233588	chr3:17233588:T:C	rs113993660	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	17631391	17631392	chr3:17631392:G:A	rs112485808	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr3	17707684	17707685	chr3:17707685:C:T	rs4566567	C	T	T	Sox1.mouse_HMG_3	1	1	+	6.195419508808566	1.2371472776949415	TCAATGCCAGTCA
chr3	18683555	18683556	chr3:18683556:T:C	rs149240297	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	18844665	18844666	chr3:18844666:T:C	rs9825031	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	18946625	18946626	chr3:18946626:A:T	rs114123001	A	T	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	20073043	20073044	chr3:20073044:T:C	rs6803231	T	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	20437502	20437503	chr3:20437503:G:A	rs57942441	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	20602783	20602784	chr3:20602784:G:A	rs11710467	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	20851668	20851669	chr3:20851669:C:T	rs4858277	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	21331323	21331324	chr3:21331324:C:T	rs9819690	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	21331469	21331470	chr3:21331470:A:T	rs1158087	A	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	21421387	21421388	chr3:21421388:A:G	rs4455340	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	21477907	21477908	chr3:21477908:A:G	rs7644446	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	21509996	21509997	chr3:21509997:C:T	rs9862072	C	T	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	21719453	21719454	chr3:21719454:G:C	rs79003092	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	21755223	21755224	chr3:21755224:A:T	rs62236199	A	T	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	21914291	21914292	chr3:21914292:T:G	rs10510520	T	G	T	Sox1.mouse_HMG_3	10	1	+	4.3758091115255535	-2.5242869100890943	TAAATCACATTGA
chr3	21954855	21954856	chr3:21954856:G:A	rs1694042	G	A	A	Sox1.mouse_HMG_3	3	1	-	5.306127253282913	0.6692646205623327	TCACTTTCAGTGG
chr3	22159547	22159548	chr3:22159548:G:C	rs141551913	G	C	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr3	22229691	22229692	chr3:22229692:C:G	rs114756562	C	G	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	22349571	22349572	chr3:22349572:C:T	rs148744676	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	22361157	22361158	chr3:22361158:T:A	rs559752613	T	A	t	Sox1.mouse_HMG_3	9	1	+	7.065365903753818	0.17845639595330964	ACAAATTCATTGA
chr3	22562567	22562568	chr3:22562568:C:T	rs4858416	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	22562572	22562573	chr3:22562573:C:G	rs6765561	C	G	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	22633606	22633607	chr3:22633607:G:T	rs1459522	G	T	t	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	22720761	22720762	chr3:22720762:A:G	rs6801866	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.73916804529069	-1.1695867340245305	TCATTTCCATTGC
chr3	23055994	23055995	chr3:23055995:A:T	rs843989	A	T	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	23084948	23084949	chr3:23084949:A:C	rs9821146	A	C	A	Sox1.mouse_HMG_3	12	1	+	6.714787795445323	4.215569891627474	ACACTAACATTAA
chr3	23543412	23543413	chr3:23543413:G:A	rs9815921	G	A	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	23699137	23699138	chr3:23699138:A:G	rs115391429	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	23704477	23704478	chr3:23704478:C:G	rs9819064	C	G	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	24213002	24213003	chr3:24213003:C:T	rs941104107	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	24416089	24416090	chr3:24416090:C:T	rs1001183730	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	24692245	24692246	chr3:24692246:T:C	rs114968910	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.768931213299528	-2.1398235660156915	TCATTAGCAGTGA
chr3	24704886	24704887	chr3:24704887:T:C	rs9862855	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	24713594	24713595	chr3:24713595:A:G	rs115697825	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.725308133998068	0.8383986261975604	TCAGTTTCATTGA
chr3	24740153	24740154	chr3:24740154:G:C	rs7616736	G	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	24740184	24740185	chr3:24740185:C:T	rs59891684	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	24741817	24741818	chr3:24741818:T:C	rs12715061	T	C	T	Sox1.mouse_HMG_3	3	1	-	11.756119984560558	4.955092822643554	ACAATGACATTGA
chr3	24741821	24741822	chr3:24741822:C:T	rs73035585	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	24846750	24846751	chr3:24846751:T:C	rs1994909	T	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	24867891	24867892	chr3:24867892:C:T	rs145891807	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	24918201	24918202	chr3:24918202:C:A	rs9881002	C	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr3	24944923	24944924	chr3:24944924:T:G	rs55964723	T	G	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	24963312	24963313	chr3:24963313:C:A	rs937267	C	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	24995011	24995012	chr3:24995012:C:T	rs115342535	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	25387720	25387721	chr3:25387721:T:A	rs79116543	T	A	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	25458033	25458034	chr3:25458034:G:A	rs112383373	G	A	G	Sox1.mouse_HMG_3	8	1	+	6.018047145390437	12.926801924705657	TCACTTACGTTGA
chr3	25458049	25458050	chr3:25458050:G:A	rs74521791	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	25461004	25461005	chr3:25461005:C:T	rs74820342	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	25507470	25507471	chr3:25507471:C:T	rs1997353	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	25556440	25556441	chr3:25556441:C:T	rs140817964	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	25679262	25679263	chr3:25679263:T:C	rs4681069	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr3	26062084	26062085	chr3:26062085:A:G	rs13063917	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	26592359	26592360	chr3:26592360:C:T	rs6764258	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	26592368	26592369	chr3:26592369:C:T	rs13097615	C	T	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	27217071	27217072	chr3:27217072:G:T	rs62256307	G	T	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	27545966	27545967	chr3:27545967:A:G	rs9870605	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	27546007	27546008	chr3:27546008:C:T	rs4680911	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	27718139	27718140	chr3:27718140:C:T	rs34287234	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	28140269	28140270	chr3:28140270:A:G	rs7636966	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	28249451	28249452	chr3:28249452:A:G	rs12498078	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	28664365	28664366	chr3:28664366:A:G	rs35353146	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	29026444	29026445	chr3:29026445:G:C	rs71319067	G	C	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	29202742	29202743	chr3:29202743:G:T	rs2048896	G	T	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	29282957	29282958	chr3:29282958:A:C	chr3:29282958:A:C	A	C	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	29365858	29365859	chr3:29365859:T:C	rs13085028	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.899551537641425	-1.9873579701590818	ACATTTTCATTGA
chr3	29401994	29401995	chr3:29401995:T:C	rs6549937	T	C	t	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	29604244	29604245	chr3:29604245:T:C	rs7634557	T	C	T	Sox1.mouse_HMG_3	0	1	-	6.1335244626323995	2.1071019168957563	ACAATTATATTGC
chr3	29972106	29972107	chr3:29972107:A:G	rs77160048	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	30082080	30082081	chr3:30082081:G:A	rs35694561	G	A	g	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	30161691	30161692	chr3:30161692:C:A	rs7639654	C	A	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	30231934	30231935	chr3:30231935:C:G	rs74647317	C	G	c	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr3	30258995	30258996	chr3:30258996:C:T	rs7646142	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	30300166	30300167	chr3:30300167:C:T	rs79687423	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	30436568	30436569	chr3:30436569:T:A	rs9810867	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.3382707979772235	-2.570483981337997	TCAATTTCATGGG
chr3	30451858	30451859	chr3:30451859:C:T	rs11129405	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	30452001	30452002	chr3:30452002:G:C	rs11129406	G	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	30453598	30453599	chr3:30453599:C:T	rs921566260	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	30684152	30684153	chr3:30684153:T:C	rs876687	T	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	30886836	30886837	chr3:30886837:G:T	rs55644344	G	T	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	31064225	31064226	chr3:31064226:C:T	rs7614625	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	31075883	31075884	chr3:31075884:A:G	rs1485925	A	G	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr3	31229788	31229789	chr3:31229789:A:G	rs118080146	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	31232700	31232701	chr3:31232701:T:A	rs75220285	T	A	T	Sox1.mouse_HMG_3	4	1	+	3.9330897673314174	-0.702123028473197	TCAATGGCATTTG
chr3	31407722	31407723	chr3:31407723:T:C	rs73824128	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	31499807	31499808	chr3:31499808:G:A	rs12485487	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	31637019	31637020	chr3:31637020:A:G	rs9828641	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.375507759764879	-1.511401748035629	ACAAAATCATTGT
chr3	31684632	31684633	chr3:31684633:C:G	rs17027964	C	G	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	32023114	32023115	chr3:32023115:A:G	rs1597666	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	32048920	32048921	chr3:32048921:A:C	rs6778224	A	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	32095506	32095507	chr3:32095507:G:A	rs9680948	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	32235803	32235804	chr3:32235804:A:G	rs4955267	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	32402004	32402005	chr3:32402005:G:A	rs540467166	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	32442992	32442993	chr3:32442993:G:A	rs113550297	G	A	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	32442997	32442998	chr3:32442998:A:G	chr3:32442998:A:G	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	32455054	32455055	chr3:32455055:G:A	rs3882310	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr3	32477893	32477894	chr3:32477894:A:G	rs116526530	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.69873545829668	-0.18817404950382755	TCACCACCATTGA
chr3	33368118	33368119	chr3:33368119:G:A	rs3915062	G	A	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	33645602	33645603	chr3:33645603:T:G	rs111308587	T	G	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	33854149	33854150	chr3:33854150:A:G	rs111745498	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	34189440	34189441	chr3:34189441:C:T	rs11712920	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	34283633	34283634	chr3:34283634:T:G	rs57357054	T	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	34283660	34283661	chr3:34283661:A:G	rs145800438	A	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	35524353	35524354	chr3:35524354:C:T	rs17033355	C	T	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	35687388	35687389	chr3:35687389:A:G	rs2063648	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.317504870968479	0.682292075163865	TCACAGCCATTGT
chr3	35907149	35907150	chr3:35907150:A:G	rs1455496	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.438272980303493	-1.3627541816135131	TCAATAGTAGTGC
chr3	35954975	35954976	chr3:35954976:T:C	rs9816885	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	36363283	36363284	chr3:36363284:A:G	rs74965390	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	36895595	36895596	chr3:36895596:T:A	rs188110692	T	A	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	36991970	36991971	chr3:36991971:T:G	rs4647200	T	G	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	37109496	37109497	chr3:37109497:C:G	rs6806252	C	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	37647219	37647220	chr3:37647220:T:C	rs6780578	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.8805432773975905	0.9804472557829453	TTAATAGCATTGC
chr3	37767985	37767986	chr3:37767986:A:G	rs11712654	A	G	a	Sox1.mouse_HMG_3	4	1	-	7.727541006446353	0.8274449848317043	TCAATTGCAATGA
chr3	38004531	38004532	chr3:38004532:A:C	rs9843506	A	C	A	Sox1.mouse_HMG_3	2	1	+	5.263053468335727	-1.6457013109794942	GCAATTGCATTGC
chr3	38355414	38355415	chr3:38355415:G:T	rs9866290	G	T	G	Sox1.mouse_HMG_3	1	1	-	7.01794278231724	0.11518999495789561	TCAAAACCATTAA
chr3	38530513	38530514	chr3:38530514:T:A	rs9860525	T	A	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	38984907	38984908	chr3:38984908:C:T	rs34235284	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	39108082	39108083	chr3:39108083:C:T	rs28362641	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	39108104	39108105	chr3:39108105:A:G	rs142798608	A	G	A	Sox1.mouse_HMG_3	5	1	+	6.562472191743812	5.329799420676723	TCACTATCATTAT
chr3	39155129	39155130	chr3:39155130:C:T	rs111946296	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	39292009	39292010	chr3:39292010:A:C	rs80127801	A	C	a	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	39343809	39343810	chr3:39343810:A:G	rs74694890	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	39414893	39414894	chr3:39414894:A:T	rs12491062	A	T	A	Sox1.mouse_HMG_3	2	1	+	5.2041394745287075	-1.7046153047865136	TCAATTTCCTTGT
chr3	39414909	39414910	chr3:39414910:C:G	rs12497517	C	G	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	39981249	39981250	chr3:39981250:G:A	rs9881911	G	A	g	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	39981668	39981669	chr3:39981669:C:T	rs7652142	C	T	t	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	40175895	40175896	chr3:40175896:C:G	rs11719904	C	G	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	40218246	40218247	chr3:40218247:G:A	rs11129869	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	40323252	40323253	chr3:40323253:T:C	rs13323106	T	C	t	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr3	41026204	41026205	chr3:41026205:C:T	rs6809212	C	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	41098165	41098166	chr3:41098166:C:A	rs60300746	C	A	C	Sox1.mouse_HMG_3	5	1	-	4.385153325278779	4.894243198263659	TCAATGACCTTGG
chr3	41188831	41188832	chr3:41188832:A:G	rs2691678	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	41502627	41502628	chr3:41502628:T:C	rs1795322	T	C	T	Sox1.mouse_HMG_3	9	1	+	9.304771921655917	2.417862413855409	ACAATACTATTGA
chr3	41768562	41768563	chr3:41768563:A:C	rs73071328	A	C	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	42017677	42017678	chr3:42017678:A:G	rs151144975	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	42077880	42077881	chr3:42077881:T:A	rs6801363	T	A	A	Sox1.mouse_HMG_3	6	1	-	6.008523021436938	5.443891863449929	ACAATAACATTCT
chr3	42090336	42090337	chr3:42090337:C:G	rs2133069	C	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	42348336	42348337	chr3:42348337:A:G	rs2240863	A	G	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	42713419	42713420	chr3:42713420:A:G	rs3895740	A	G	G	Sox1.mouse_HMG_3	4	1	-	4.298480930039673	-2.601615091574974	TCACTACCAATGT
chr3	42736370	42736371	chr3:42736371:A:G	rs11922251	A	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	42819974	42819975	chr3:42819975:G:A	chr3:42819975:G:A	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	43364905	43364906	chr3:43364906:G:A	rs150764868	G	A	g	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	43692839	43692840	chr3:43692840:G:A	rs12490378	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	43696858	43696859	chr3:43696859:C:G	rs12489159	C	G	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	43746519	43746520	chr3:43746520:G:A	rs141660788	G	A	g	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	44003874	44003875	chr3:44003875:A:G	rs6806281	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	44099772	44099773	chr3:44099773:A:G	rs6789231	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	44536795	44536796	chr3:44536796:G:T	rs2049777	G	T	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	45025988	45025989	chr3:45025989:A:C	rs72864862	A	C	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	45065054	45065055	chr3:45065055:C:T	rs62242481	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	45089186	45089187	chr3:45089187:G:T	rs79885994	G	T	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	45100151	45100152	chr3:45100152:T:G	rs62242535	T	G	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	45120033	45120034	chr3:45120034:G:A	rs191954996	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	45319701	45319702	chr3:45319702:A:G	rs9829766	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	45693649	45693650	chr3:45693650:T:C	rs1609553	T	C	C	Sox1.mouse_HMG_3	6	1	+	5.118362612782006	5.631440427892477	TCCATTTCATTGC
chr3	45693659	45693660	chr3:45693660:A:G	rs11707239	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	45875525	45875526	chr3:45875526:C:T	rs74426244	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	46313127	46313128	chr3:46313128:A:G	rs140058837	A	G	A	Sox1.mouse_HMG_3	3	1	-	4.890892437273827	9.527755069994408	TCATTGGCATTGT
chr3	46313143	46313144	chr3:46313144:C:T	rs149884352	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	46370348	46370349	chr3:46370349:G:T	rs2734648	G	T	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	46398354	46398355	chr3:46398355:A:G	rs144850809	A	G	g	Sox1.mouse_HMG_3	8	1	+	6.28864077333183	-0.6201140059833905	ACACTCACATTGA
chr3	46421926	46421927	chr3:46421927:T:A	rs7627175	T	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	46469677	46469678	chr3:46469678:C:A	rs885485	C	A	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	46488678	46488679	chr3:46488679:C:T	rs7644995	C	T	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	46544752	46544753	chr3:46544753:G:A	rs7626061	G	A	A	Sox1.mouse_HMG_3	11	1	+	7.636300739357628	3.526460308371729	TCACTTAAATTGA
chr3	46549613	46549614	chr3:46549614:T:A	rs6770574	T	A	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	46614860	46614861	chr3:46614861:A:G	rs873382	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	46638992	46638993	chr3:46638993:C:G	rs11709936	C	G	C	Sox1.mouse_HMG_3	1	1	+	5.243619010212052	-1.6591337771472925	TCAATACTAATGA
chr3	48491420	48491421	chr3:48491421:C:T	rs62264271	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	48740312	48740313	chr3:48740313:A:G	rs141215013	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	49076279	49076280	chr3:49076280:C:A	rs34580506	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	49076295	49076296	chr3:49076296:C:T	rs73082362	C	T	c	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	49208211	49208212	chr3:49208212:T:G	rs4955439	T	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	49525649	49525650	chr3:49525650:C:T	rs191852870	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	49802604	49802605	chr3:49802605:T:C	rs187062009	T	C	T	Sox1.mouse_HMG_3	4	1	+	3.864320104239465	-3.0357759173751826	ACACTACCCTTGA
chr3	50271692	50271693	chr3:50271693:A:G	rs12492880	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.342258740102814	-2.5446507676976937	TCAAGGCCATTGG
chr3	50296195	50296196	chr3:50296196:T:C	rs3774753	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	50676031	50676032	chr3:50676032:A:C	rs193132573	A	C	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	50745933	50745934	chr3:50745934:T:C	rs60552386	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	51432789	51432790	chr3:51432790:T:C	rs36140019	T	C	t	Sox1.mouse_HMG_3	10	1	+	4.615274731753001	-0.019938064051613802	TAAATGTCATTGC
chr3	51896833	51896834	chr3:51896834:T:C	rs57859638	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr3	52091376	52091377	chr3:52091377:T:C	rs12493204	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	52144539	52144540	chr3:52144540:G:A	rs148576317	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	52194133	52194134	chr3:52194134:A:T	rs411457	A	T	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	52348456	52348457	chr3:52348457:A:C	rs116698005	A	C	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	52852588	52852589	chr3:52852589:T:C	rs2276825	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	53218740	53218741	chr3:53218741:A:C	rs73840240	A	C	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	53624696	53624697	chr3:53624697:C:T	rs147846726	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	53628942	53628943	chr3:53628943:G:A	rs7630968	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	53823622	53823623	chr3:53823623:C:T	rs759532293	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	53826994	53826995	chr3:53826995:G:A	rs4687589	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	53826995	53826996	chr3:53826996:C:G	rs4687746	C	G	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	53858525	53858526	chr3:53858526:C:T	rs13315972	C	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	54044804	54044805	chr3:54044805:T:A	rs35734208	T	A	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	54088983	54088984	chr3:54088984:G:T	rs4472075	G	T	T	Sox1.mouse_HMG_3	1	1	-	5.2041394745287075	-1.6986133128306367	TCGATTTCATTGT
chr3	54191972	54191973	chr3:54191973:G:A	rs4077974	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	54226071	54226072	chr3:54226072:C:T	rs193269972	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	54755946	54755947	chr3:54755947:T:C	rs72874207	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.648419827816641	-0.1526073341003631	TCAATTTCAGTAA
chr3	54902643	54902644	chr3:54902644:G:A	rs17319204	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr3	54902661	54902662	chr3:54902662:T:G	rs17054529	T	G	T	Sox1.mouse_HMG_3	9	1	+	5.292254692860492	1.5241796557479597	TCCATTGCATTGT
chr3	55194184	55194185	chr3:55194185:T:G	rs11130464	T	G	T	Sox1.mouse_HMG_3	10	1	+	7.673121801601981	0.7730257799873341	TCAATGACGTTGA
chr3	55483346	55483347	chr3:55483347:C:G	rs187535334	C	G	C	Sox1.mouse_HMG_3	5	1	+	4.959715615077977	8.26303029711028	TCAATCCCAGTGC
chr3	55492984	55492985	chr3:55492985:C:T	rs115286556	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	55680483	55680484	chr3:55680484:T:C	rs75683922	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	55758842	55758843	chr3:55758843:G:C	rs11130483	G	C	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	56046313	56046314	chr3:56046314:A:G	rs1401406	A	G	a	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	56220641	56220642	chr3:56220642:A:G	rs73080543	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.732650404454482	0.09743760864986717	ACAATTGCAGTGG
chr3	56296490	56296491	chr3:56296491:A:C	rs76649219	A	C	A	Sox1.mouse_HMG_3	4	1	-	4.899551537641425	-2.0005444839732216	ACATTTTCATTGA
chr3	56443467	56443468	chr3:56443468:T:C	rs1878267	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	56606315	56606316	chr3:56606316:T:A	rs35803417	T	A	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	56629523	56629524	chr3:56629524:A:G	rs4681937	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	56680394	56680395	chr3:56680395:A:C	rs7645941	A	C	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	56788288	56788289	chr3:56788289:A:G	rs11712455	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.386187677498587	-2.500721830301921	GCAATTTCATTGG
chr3	56797238	56797239	chr3:56797239:T:C	rs35983891	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	56837403	56837404	chr3:56837404:A:G	rs7636574	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.387035676305651	-2.5130603453089955	TCAATTCCAGTTA
chr3	56885481	56885482	chr3:56885482:C:A	rs55949100	C	A	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	57036127	57036128	chr3:57036128:C:A	rs1010338	C	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	57130770	57130771	chr3:57130771:T:C	rs141285016	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	57446217	57446218	chr3:57446218:T:C	rs62622492	T	C	t	Sox1.mouse_HMG_3	9	1	+	8.159676720560933	1.2727672127604255	TCAATTCGATTGA
chr3	57932213	57932214	chr3:57932214:A:G	rs704530	A	G	G	Sox1.mouse_HMG_3	9	1	-	5.768770632515716	-1.118138875284792	TCTATTACATTGT
chr3	58392478	58392479	chr3:58392479:C:T	rs55797456	C	T	c	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	58419703	58419704	chr3:58419704:A:G	rs11714807	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	58423335	58423336	chr3:58423336:T:C	rs12631656	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	58678627	58678628	chr3:58678628:G:A	rs2364307	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr3	59331621	59331622	chr3:59331622:A:T	rs12489630	A	T	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	59427315	59427316	chr3:59427316:T:C	rs115525847	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.409605706986639	-2.490490314628008	TCAATGACATTTG
chr3	59427333	59427334	chr3:59427334:T:C	rs1021813	T	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	59457056	59457057	chr3:59457057:C:T	rs78353045	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	59483460	59483461	chr3:59483461:A:G	rs6775298	A	G	G	Sox1.mouse_HMG_3	3	1	+	7.4953157222079465	0.6942885602909394	TCAAAACTATTGA
chr3	59501794	59501795	chr3:59501795:C:A	rs9869179	C	A	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	59542118	59542119	chr3:59542119:G:T	rs62250725	G	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	59986050	59986051	chr3:59986051:C:T	rs3821481	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	60136315	60136316	chr3:60136316:C:A	rs372840794	C	A	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr3	60168347	60168348	chr3:60168348:A:G	rs12172955	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	60227752	60227753	chr3:60227753:T:G	rs17031575	T	G	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	60513354	60513355	chr3:60513355:T:C	rs3911035	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	60527155	60527156	chr3:60527156:A:G	rs241704	A	G	A	Sox1.mouse_HMG_3	3	1	+	8.481908119098334	1.680880957181329	TCAATTACATTAC
chr3	60773395	60773396	chr3:60773396:C:T	rs6772782	C	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	61519110	61519111	chr3:61519111:G:A	rs35581372	G	A	G	Sox1.mouse_HMG_3	11	1	+	6.0158375909427	1.9059971599568026	TCCATAGCATTGT
chr3	61533458	61533459	chr3:61533459:A:G	rs74533053	A	G	A	Sox1.mouse_HMG_3	6	1	+	4.521864254872543	4.045348315217321	TCATTTACAGTGA
chr3	61581088	61581089	chr3:61581089:C:T	rs115811120	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	61639096	61639097	chr3:61639097:G:T	rs4688646	G	T	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	61662961	61662962	chr3:61662962:T:C	rs2365936	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	61718840	61718841	chr3:61718841:G:A	rs685896	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	62044974	62044975	chr3:62044975:G:A	rs4688121	G	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	62445500	62445501	chr3:62445501:A:G	chr3:62445501:A:G	A	G	A	Sox1.mouse_HMG_3	3	1	-	4.437339657674865	9.074202290395446	TCATTTTCATTGG
chr3	62809378	62809379	chr3:62809379:T:C	rs574995020	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	63351485	63351486	chr3:63351486:G:T	rs545728596	G	T	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr3	63451226	63451227	chr3:63451227:C:T	rs17068589	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	63532823	63532824	chr3:63532824:A:T	chr3:63532824:A:T	A	T	A	Sox1.mouse_HMG_3	9	1	-	8.412610223235227	1.5257007154347213	ACAATTTCATTGG
chr3	63753942	63753943	chr3:63753943:T:C	rs34520803	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	64017428	64017429	chr3:64017429:G:A	rs76478992	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	64047084	64047085	chr3:64047085:C:A	rs6769680	C	A	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	64121891	64121892	chr3:64121892:A:C	rs704384	A	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	64144389	64144390	chr3:64144390:A:G	rs697269	A	G	A	Sox1.mouse_HMG_3	0	1	-	7.71925318071731	0.867074038624025	TTAATTACATTGT
chr3	64160082	64160083	chr3:64160083:T:C	rs2306380	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	64385751	64385752	chr3:64385752:T:C	rs112394914	T	C	C	Sox1.mouse_HMG_3	10	1	+	6.846630361080134	2.2114175652755206	TCAAAATCAGTGA
chr3	64519284	64519285	chr3:64519285:G:A	rs78299385	G	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	64563054	64563055	chr3:64563055:C:T	rs4688481	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr3	64595683	64595684	chr3:64595684:G:A	rs60073432	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	64620178	64620179	chr3:64620179:A:G	rs10433642	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	64673430	64673431	chr3:64673431:G:C	rs4387961	G	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr3	64673435	64673436	chr3:64673436:G:A	rs4505692	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	64684764	64684765	chr3:64684765:A:G	rs999728298	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.437339657674865	-2.449569850125642	TCATTTTCATTGG
chr3	64756556	64756557	chr3:64756557:C:T	rs78132719	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.790721388167228	0.8324491570536012	TCATTTACATTGC
chr3	64961358	64961359	chr3:64961359:T:C	rs80271139	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	64972827	64972828	chr3:64972828:T:C	rs35301373	T	C	T	Sox1.mouse_HMG_3	9	1	+	10.427584020887808	3.540674513087301	TCACTTACATTGC
chr3	65110883	65110884	chr3:65110884:T:C	rs17402887	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	65130525	65130526	chr3:65130526:G:A	rs1482609	G	A	g	Sox1.mouse_HMG_3	3	1	-	7.730945913039626	3.094083280319044	TCACAGCCATTGA
chr3	65230695	65230696	chr3:65230696:C:G	rs143192638	C	G	C	Sox1.mouse_HMG_3	0	1	-	3.014761662933106	3.014761662933106	GCACTGCCATTGC
chr3	65485151	65485152	chr3:65485152:G:C	rs12054362	G	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr3	65535648	65535649	chr3:65535649:A:G	rs17073070	A	G	A	Sox1.mouse_HMG_3	3	1	+	9.538531949142415	2.73750478722541	TCAATGGCATTCA
chr3	65816311	65816312	chr3:65816312:T:G	rs1473530	T	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	66002053	66002054	chr3:66002054:C:T	rs6779615	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr3	66180386	66180387	chr3:66180387:A:G	rs143935578	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	66280466	66280467	chr3:66280467:C:T	chr3:66280467:C:T	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	66353640	66353641	chr3:66353641:A:G	rs9868446	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	66390453	66390454	chr3:66390454:G:C	rs74856151	G	C	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	66412829	66412830	chr3:66412830:C:G	rs12493943	C	G	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	66516783	66516784	chr3:66516784:T:C	rs7646790	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.072413228164637	-0.8144962796358717	CCAATAGCATTGT
chr3	67133867	67133868	chr3:67133868:T:C	rs73091784	T	C	T	Sox1.mouse_HMG_3	8	1	-	7.595725490247977	0.6869707109327567	TCAATAGTATTAA
chr3	67133872	67133873	chr3:67133873:T:C	rs73093447	T	C	c	Sox1.mouse_HMG_3	3	1	-	7.595725490247977	0.7946983283309708	TCAATAGTATTAA
chr3	67154432	67154433	chr3:67154433:T:C	rs6785941	T	C	-	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	67212813	67212814	chr3:67212814:G:A	rs4128751	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	67404493	67404494	chr3:67404494:T:C	rs4450832	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.292254692860492	-1.6165000864547279	TCAATTGCTTTGT
chr3	67557843	67557844	chr3:67557844:C:T	rs2634736	C	T	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr3	67616857	67616858	chr3:67616858:C:T	rs9683084	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	67640201	67640202	chr3:67640202:T:C	rs1450345	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	67845476	67845477	chr3:67845477:A:G	rs75445968	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.852128416204848	-2.0347810915956597	TCATTACCATTAA
chr3	67901882	67901883	chr3:67901883:C:T	rs1868185	C	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr3	69274167	69274168	chr3:69274168:G:A	rs35547879	G	A	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	69274179	69274180	chr3:69274180:A:G	rs1564755	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	69308186	69308187	chr3:69308187:C:A	rs11707515	C	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	69425469	69425470	chr3:69425470:C:T	rs61033357	C	T	C	Sox1.mouse_HMG_3	3	1	+	3.489121170210763	-1.1477414625098177	TCACTTCCAATGC
chr3	69665445	69665446	chr3:69665446:C:T	rs1322976474	C	T	C	Sox1.mouse_HMG_3	1	1	+	7.46028869997766	2.5020164688640354	TCAATTTCATTCC
chr3	69683128	69683129	chr3:69683129:C:T	rs2114659	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr3	69719781	69719782	chr3:69719782:A:G	rs7622943	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	69719788	69719789	chr3:69719789:T:C	rs7625281	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	69771436	69771437	chr3:69771437:C:G	rs536395486	C	G	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	69970471	69970472	chr3:69970472:T:A	rs1491688	T	A	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	70044570	70044571	chr3:70044571:A:G	rs13094951	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr3	70935907	70935908	chr3:70935908:C:A	rs11928769	C	A	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr3	71213022	71213023	chr3:71213023:C:T	rs73108264	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	71227983	71227984	chr3:71227984:T:C	rs2686275	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	71247426	71247427	chr3:71247427:G:C	rs11712599	G	C	G	Sox1.mouse_HMG_3	7	1	-	7.039314045324566	0.15957765485995568	TCAATGGCATTCC
chr3	71247427	71247428	chr3:71247428:C:T	rs11720738	C	T	C	Sox1.mouse_HMG_3	6	1	-	7.039314045324566	7.5158299849797885	TCAATGGCATTCC
chr3	71309733	71309734	chr3:71309734:C:A	rs557117932	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	71429762	71429763	chr3:71429763:C:T	rs115916492	C	T	.	Sox1.mouse_HMG_3	4	1	+	4.952984872119121	11.853080893733766	TCACCGTCATTGA
chr3	71723466	71723467	chr3:71723467:T:C	rs9680899	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	71790250	71790251	chr3:71790251:G:A	rs1343839	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr3	72075898	72075899	chr3:72075899:T:C	rs67908047	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	72530682	72530683	chr3:72530683:A:G	rs73839819	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	72821090	72821091	chr3:72821091:A:T	rs17010184	A	T	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	73037239	73037240	chr3:73037240:A:C	rs79773690	A	C	A	Sox1.mouse_HMG_3	3	1	-	4.427165819426163	4.427165819426163	TCATTAGCATTAA
chr3	73147016	73147017	chr3:73147017:C:A	rs2007172	C	A	C	Sox1.mouse_HMG_3	9	1	-	4.669862353601886	8.437937390714419	TCAATAGCAGGGA
chr3	73225309	73225310	chr3:73225310:A:G	rs116053750	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.439572530123151	-2.4605234914914984	TCAATTGCACTGG
chr3	73325290	73325291	chr3:73325291:T:C	rs4677261	T	C	C	Sox1.mouse_HMG_3	9	1	+	7.743240462747869	0.8563309549473628	TCACTGTCATTAA
chr3	73509502	73509503	chr3:73509503:C:T	rs4676929	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	73510472	73510473	chr3:73510473:T:C	rs4557100	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	73557486	73557487	chr3:73557487:C:T	rs35594519	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	73656392	73656393	chr3:73656393:C:T	rs13082404	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	73656396	73656397	chr3:73656397:C:T	rs137864514	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	73656402	73656403	chr3:73656403:C:T	rs192963395	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr3	73665669	73665670	chr3:73665670:T:C	rs1912770	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	73665691	73665692	chr3:73665692:T:A	rs1039956	T	A	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	73953001	73953002	chr3:73953002:G:A	rs9857728	G	A	A	Sox1.mouse_HMG_3	11	1	+	8.110607124565114	4.000766693579216	TCAATAAAATTGT
chr3	75013600	75013601	chr3:75013601:T:C	rs9842069	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	75013619	75013620	chr3:75013620:C:T	rs146996738	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	75350135	75350136	chr3:75350136:A:T	rs7613668	A	T	.	Sox1.mouse_HMG_3	2	1	+	9.587280105505917	2.6785253261906976	TCACTTCCATTGG
chr3	75672365	75672366	chr3:75672366:A:G	rs73126903	A	G	a	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	76138767	76138768	chr3:76138768:T:G	rs7648349	T	G	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	76702860	76702861	chr3:76702861:T:G	rs2608137	T	G	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	77042530	77042531	chr3:77042531:T:G	rs57050685	T	G	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	77119039	77119040	chr3:77119040:G:C	rs7649552	G	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	77693257	77693258	chr3:77693258:G:A	rs776105	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	77705181	77705182	chr3:77705182:A:G	rs2044890	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	77726421	77726422	chr3:77726422:G:A	rs60342231	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	77772827	77772828	chr3:77772828:C:T	rs28469660	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.572274745425204	1.4624343144393066	TGAATACCATTGG
chr3	77816296	77816297	chr3:77816297:C:A	rs11926162	C	A	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr3	77836720	77836721	chr3:77836721:T:C	rs62254509	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	77945661	77945662	chr3:77945662:G:A	rs11127609	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	78158035	78158036	chr3:78158036:A:G	rs1917072	A	G	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	78239404	78239405	chr3:78239405:C:T	rs1880363	C	T	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	78302962	78302963	chr3:78302963:T:C	rs9822043	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	78698628	78698629	chr3:78698629:C:T	rs6769521	C	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	78935415	78935416	chr3:78935416:C:T	rs6772919	C	T	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	79098429	79098430	chr3:79098430:T:C	rs74719498	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	79141534	79141535	chr3:79141535:G:C	rs7619949	G	C	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	79709797	79709798	chr3:79709798:A:T	rs4856621	A	T	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr3	79767740	79767741	chr3:79767741:C:G	rs9861471	C	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	79819614	79819615	chr3:79819615:C:A	rs9846622	C	A	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	80367000	80367001	chr3:80367001:C:T	rs188766889	C	T	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	80734082	80734083	chr3:80734083:T:C	rs36040644	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr3	81004093	81004094	chr3:81004094:G:C	rs2639255	G	C	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	81034167	81034168	chr3:81034168:G:C	rs2639266	G	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	81106033	81106034	chr3:81106034:G:T	rs893517	G	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	81550698	81550699	chr3:81550699:C:T	rs9820295	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	82293820	82293821	chr3:82293821:T:G	rs4339123	T	G	T	Sox1.mouse_HMG_3	12	1	-	4.369807119569677	1.8705892157518282	TCAATCACTTTGA
chr3	82295653	82295654	chr3:82295654:C:G	rs73146013	C	G	C	Sox1.mouse_HMG_3	12	1	+	5.118362612782004	4.3296120402766505	TCAATTTCCTTGC
chr3	82498479	82498480	chr3:82498480:G:A	rs9854343	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.953587398710406	0.9953151675967793	ACAATCACATTGC
chr3	82909870	82909871	chr3:82909871:T:G	rs2047333	T	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	85636236	85636237	chr3:85636237:C:T	rs75699990	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	85636257	85636258	chr3:85636258:C:T	rs11714008	C	T	T	Sox1.mouse_HMG_3	7	1	+	4.869210476760051	1.2367429856648589	ACAATGACACTGA
chr3	85670606	85670607	chr3:85670607:G:A	rs4464471	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	85989539	85989540	chr3:85989540:G:T	rs62261591	G	T	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr3	86629328	86629329	chr3:86629329:A:G	rs9815232	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	86793501	86793502	chr3:86793502:C:T	rs59662471	C	T	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	86801957	86801958	chr3:86801958:A:G	rs28553515	A	G	a	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	86868295	86868296	chr3:86868296:C:T	rs9842925	C	T	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	87541717	87541718	chr3:87541718:T:A	rs9855058	T	A	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	87798748	87798749	chr3:87798749:A:C	rs55788242	A	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	87914635	87914636	chr3:87914636:C:T	rs13320429	C	T	C	Sox1.mouse_HMG_3	1	1	+	12.213656514668902	7.255384283555275	ACAATTCCATTGA
chr3	88257635	88257636	chr3:88257636:T:G	rs6551306	T	G	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	88990810	88990811	chr3:88990811:G:A	rs6803153	G	A	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	89244872	89244873	chr3:89244873:A:T	rs4857496	A	T	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr3	89255457	89255458	chr3:89255458:C:T	rs6794198	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr3	89841333	89841334	chr3:89841334:G:A	rs13083420	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	90062789	90062790	chr3:90062790:G:T	rs76408732	G	T	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	94291973	94291974	chr3:94291974:A:G	rs1584925	A	G	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr3	94314994	94314995	chr3:94314995:T:G	rs7625227	T	G	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	94421124	94421125	chr3:94421125:T:C	rs9865678	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	94481702	94481703	chr3:94481703:C:T	rs1002892489	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	94507723	94507724	chr3:94507724:A:G	rs9813962	A	G	.	Sox1.mouse_HMG_3	10	1	-	7.383091881857483	2.7478790860528695	TCACTAACAGTGC
chr3	95281241	95281242	chr3:95281242:T:C	rs184977313	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.617826096345867	-1.26908341145464	TCAATAACCTTGG
chr3	95458541	95458542	chr3:95458542:G:A	rs7633906	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	95587617	95587618	chr3:95587618:C:G	rs34765840	C	G	c	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	96201724	96201725	chr3:96201725:C:T	rs11714452	C	T	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	96358069	96358070	chr3:96358070:G:T	rs11718109	G	T	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	97389873	97389874	chr3:97389874:T:C	rs116617114	T	C	T	Sox1.mouse_HMG_3	12	1	-	6.135991924404889	2.8480234480816873	TCAAAAGCATTCA
chr3	97779125	97779126	chr3:97779126:C:T	rs7620134	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	97872683	97872684	chr3:97872684:A:G	rs186224760	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	98050932	98050933	chr3:98050933:G:A	rs9289510	G	A	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	98189870	98189871	chr3:98189871:T:G	rs137915854	T	G	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	98275044	98275045	chr3:98275045:C:T	rs1566167	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	98275077	98275078	chr3:98275078:T:A	rs114741951	T	A	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	98523258	98523259	chr3:98523259:T:C	rs6799550	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	98746881	98746882	chr3:98746882:T:G	rs828597	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	98780934	98780935	chr3:98780935:C:T	rs6790650	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	99250592	99250593	chr3:99250593:C:G	rs6807964	C	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	99410170	99410171	chr3:99410171:G:T	rs2623321	G	T	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	99419434	99419435	chr3:99419435:C:T	rs2623349	C	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	100227977	100227978	chr3:100227978:A:G	rs12492610	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	100256613	100256614	chr3:100256614:T:A	rs77760672	T	A	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	100641424	100641425	chr3:100641425:A:T	rs1520650	A	T	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	101167584	101167585	chr3:101167585:T:C	rs73864383	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	101223188	101223189	chr3:101223189:A:T	rs511575	A	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	101252075	101252076	chr3:101252076:A:C	rs348881	A	C	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	101375632	101375633	chr3:101375633:T:G	rs28883302	T	G	T	Sox1.mouse_HMG_3	3	1	-	4.842689855387121	2.6785253261906967	TCAATTCCTTTGG
chr3	101465289	101465290	chr3:101465290:A:G	rs7653081	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	101640778	101640779	chr3:101640779:A:G	rs13082236	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.4259813940913535	-2.4609281137091537	TCAGTCCCATTGA
chr3	101677684	101677685	chr3:101677685:G:C	rs3806654	G	C	C	Sox1.mouse_HMG_3	7	1	-	8.962370209891006	2.082633819426394	GCAATAACATTGA
chr3	101903481	101903482	chr3:101903482:T:C	rs16844399	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	101935453	101935454	chr3:101935454:A:G	rs2951443	A	G	a	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	101936680	101936681	chr3:101936681:A:C	rs1053393819	A	C	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	101941380	101941381	chr3:101941381:G:C	rs75564788	G	C	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	101977855	101977856	chr3:101977856:A:G	rs1019710148	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	102094286	102094287	chr3:102094287:T:C	rs9832010	T	C	T	Sox1.mouse_HMG_3	8	1	+	7.617580516599853	7.617580516599853	TCAATTTCTTTGA
chr3	102830120	102830121	chr3:102830121:A:G	rs1694185	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	102888078	102888079	chr3:102888079:T:A	rs1877271	T	A	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr3	103685067	103685068	chr3:103685068:C:T	rs559511967	C	T	c	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	104103050	104103051	chr3:104103051:G:C	rs1107739	G	C	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	104103063	104103064	chr3:104103064:C:A	rs13076580	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	104215008	104215009	chr3:104215009:G:A	rs13068337	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.1310093126081675	5.216786174354869	TCAATGCCATGGC
chr3	104553416	104553417	chr3:104553417:G:A	rs2063815	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr3	104676464	104676465	chr3:104676465:C:G	rs1083405	C	G	G	Sox1.mouse_HMG_3	7	1	+	5.179905889740008	-1.6998305007246033	TGAATGACATTGC
chr3	104814403	104814404	chr3:104814404:T:C	rs9862355	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	104948131	104948132	chr3:104948132:T:C	rs13066237	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	105030518	105030519	chr3:105030519:C:T	rs35820849	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	105059113	105059114	chr3:105059114:T:C	rs10933804	T	C	C	Sox1.mouse_HMG_3	4	1	+	5.273327081573877	-1.6267689400407703	TCCATAATATTGA
chr3	105449253	105449254	chr3:105449254:C:A	rs11710166	C	A	c	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	105746863	105746864	chr3:105746864:T:C	rs148156634	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	105752844	105752845	chr3:105752845:T:C	rs12054270	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	105826018	105826019	chr3:105826019:C:T	rs1992522	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	105978911	105978912	chr3:105978912:C:G	rs71631538	C	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	106333001	106333002	chr3:106333002:T:C	rs7616865	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	106616233	106616234	chr3:106616234:A:G	rs73857134	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	106616234	106616235	chr3:106616235:C:T	rs7626568	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	106986459	106986460	chr3:106986460:A:G	rs1709938	A	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	107263612	107263613	chr3:107263613:G:A	rs73194538	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	107263687	107263688	chr3:107263688:A:G	rs73194541	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	107367252	107367253	chr3:107367253:A:G	rs17194811	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	107497760	107497761	chr3:107497761:A:G	rs16853538	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	107797040	107797041	chr3:107797041:A:G	chr3:107797041:A:G	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	107893150	107893151	chr3:107893151:G:T	rs190371971	G	T	G	Sox1.mouse_HMG_3	12	1	-	6.098865767913857	8.598083671731706	TCACTGCCAGTGC
chr3	107893173	107893174	chr3:107893174:G:T	rs184151674	G	T	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	107920087	107920088	chr3:107920088:A:G	rs575801924	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	107998061	107998062	chr3:107998062:T:G	rs16854078	T	G	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	108222859	108222860	chr3:108222860:A:G	rs921564554	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.574931511169904	-1.226095650747104	TCAATACCATAGG
chr3	108222884	108222885	chr3:108222885:A:G	rs79692099	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	108223753	108223754	chr3:108223754:G:T	rs9838839	G	T	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	108440751	108440752	chr3:108440752:G:C	rs57937465	G	C	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr3	108565142	108565143	chr3:108565143:T:C	rs1454194	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	109224192	109224193	chr3:109224193:G:A	rs1163372	G	A	.	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	109792663	109792664	chr3:109792664:T:C	rs75159448	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	109802293	109802294	chr3:109802294:A:G	chr3:109802294:A:G	A	G	A	Sox1.mouse_HMG_3	9	1	-	10.132694222788455	3.245784714987949	TTAATTACATTGA
chr3	109818211	109818212	chr3:109818212:C:G	rs142619023	C	G	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	110181061	110181062	chr3:110181062:C:T	rs116857477	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	110436494	110436495	chr3:110436495:A:G	rs67334734	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.242737241062088	0.4417100791450814	TTAATTGCATTGT
chr3	110485425	110485426	chr3:110485426:C:T	rs11721302	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.878148086829897	0.9198758557162718	TCACATACATTGT
chr3	110774698	110774699	chr3:110774699:C:T	rs12695218	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	111210243	111210244	chr3:111210244:A:G	rs57976070	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	111210397	111210398	chr3:111210398:C:A	rs4682242	C	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	111237058	111237059	chr3:111237059:G:A	rs36019095	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	111237096	111237097	chr3:111237097:C:T	rs62273847	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr3	111316372	111316373	chr3:111316373:G:T	rs140009617	G	T	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	111322966	111322967	chr3:111322967:G:A	rs2698355	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	111332438	111332439	chr3:111332439:G:A	rs2130078	G	A	g	Sox1.mouse_HMG_3	7	1	-	5.453415987403428	1.8209484963082356	TCACTTTCTTTGA
chr3	111546578	111546579	chr3:111546579:T:C	rs62273542	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	111619488	111619489	chr3:111619489:A:G	rs6780729	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.464182695628434	-1.4445720836867868	ACATTTACATTGA
chr3	111696107	111696108	chr3:111696108:G:A	rs73214109	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	111768653	111768654	chr3:111768654:T:A	rs7641533	T	A	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	111851282	111851283	chr3:111851283:A:C	rs1282975	A	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	111903884	111903885	chr3:111903885:G:T	rs12495997	G	T	g	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	111954912	111954913	chr3:111954913:C:T	rs78617540	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.888924965977905	2.2564574748827124	TCAAATACATTCA
chr3	112039228	112039229	chr3:112039229:G:A	rs2197205	G	A	A	Sox1.mouse_HMG_3	7	1	-	6.34591322711157	2.7134457360163777	TCAAATACATTAA
chr3	112039240	112039241	chr3:112039241:A:T	rs6783345	A	T	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	112333985	112333986	chr3:112333986:G:A	rs73856005	G	A	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr3	112519494	112519495	chr3:112519495:T:C	rs77253692	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	112579478	112579479	chr3:112579479:C:T	rs80049720	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	112579497	112579498	chr3:112579498:A:G	rs1472107	A	G	G	Sox1.mouse_HMG_3	5	1	-	9.074202290395446	5.261797735378261	TCACTTTCATTGG
chr3	112786775	112786776	chr3:112786776:C:T	rs13082544	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	112786802	112786803	chr3:112786803:A:G	rs6781211	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	112871705	112871706	chr3:112871706:T:C	rs11714354	T	C	C	Sox1.mouse_HMG_3	12	1	-	6.69873545829668	3.410766981973478	TCACCACCATTGA
chr3	113947172	113947173	chr3:113947173:G:C	rs3204024	G	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	114210631	114210632	chr3:114210632:T:C	rs59332094	T	C	t	Sox1.mouse_HMG_3	2	1	-	5.315855034052511	-1.5928997452627083	TCATTGCCATTGT
chr3	114719365	114719366	chr3:114719366:T:C	rs145799027	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.341163414682061	1.5401362527650557	TCCATATCATTGA
chr3	115156312	115156313	chr3:115156313:G:A	rs13098429	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	115239961	115239962	chr3:115239962:C:T	chr3:115239962:C:T	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	115863098	115863099	chr3:115863099:A:G	rs61391157	A	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr3	115945310	115945311	chr3:115945311:C:T	rs3884594	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	116511863	116511864	chr3:116511864:T:A	rs6771246	T	A	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	116716804	116716805	chr3:116716805:C:A	rs1133335	C	A	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	116716805	116716806	chr3:116716806:G:A	rs80058968	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr3	117168576	117168577	chr3:117168577:C:T	rs9880688	C	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr3	117392787	117392788	chr3:117392788:T:C	rs1398629	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.563626122994085	-0.32328338480642205	TCACTCCCATTGC
chr3	117407718	117407719	chr3:117407719:C:T	rs4855946	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	117493866	117493867	chr3:117493867:C:T	rs140838468	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	117611407	117611408	chr3:117611408:C:T	rs1354147	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	117651300	117651301	chr3:117651301:A:C	rs9875044	A	C	C	Sox1.mouse_HMG_3	1	1	-	6.284082530603834	4.339601974358118	TTAATGCCATTGG
chr3	117872508	117872509	chr3:117872509:A:G	rs7622841	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr3	118119215	118119216	chr3:118119216:G:T	rs1499984	G	T	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	118973786	118973787	chr3:118973787:G:A	rs75371742	G	A	G	Sox1.mouse_HMG_3	6	1	-	2.958186025711171	2.4451082106007003	TCTCTGCCATTGC
chr3	118990445	118990446	chr3:118990446:T:C	rs762100016	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr3	119351669	119351670	chr3:119351670:T:C	rs56285588	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	119442602	119442603	chr3:119442603:C:T	rs112113709	C	T	C	Sox1.mouse_HMG_3	6	1	+	7.62757045068132	7.1144926355708495	TAAATGCCATTGA
chr3	119677823	119677824	chr3:119677824:C:G	rs35943908	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	119792091	119792092	chr3:119792092:T:A	rs56155951	T	A	A	Sox1.mouse_HMG_3	10	1	+	8.18387159805987	1.283775576445223	TCAATATCATTCC
chr3	119937290	119937291	chr3:119937291:T:C	rs77881395	T	C	T	Sox1.mouse_HMG_3	0	1	-	7.646827822549339	3.6204052768126966	ACAATTCCATTCA
chr3	120313899	120313900	chr3:120313900:C:T	rs191197813	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	120405885	120405886	chr3:120405886:A:G	rs4676778	A	G	G	Sox1.mouse_HMG_3	6	1	+	6.516805912305786	6.040289972650561	TCAATAACATTTT
chr3	120435771	120435772	chr3:120435772:C:T	rs1733303	C	T	C	Sox1.mouse_HMG_3	6	1	+	4.820264244076661	4.30718642896619	ACAATGCCATTTA
chr3	120435795	120435796	chr3:120435796:A:G	rs6764364	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	120517642	120517643	chr3:120517643:C:T	rs3861850	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr3	120678245	120678246	chr3:120678246:A:C	rs3755563	A	C	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr3	120781217	120781218	chr3:120781218:C:T	rs17243695	C	T	c	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	121225368	121225369	chr3:121225369:G:A	rs16832180	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	121295709	121295710	chr3:121295710:T:C	rs1546347	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	121837371	121837372	chr3:121837372:C:T	rs9826473	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	121868889	121868890	chr3:121868890:A:T	rs9869891	A	T	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	121894206	121894207	chr3:121894207:C:T	rs10470412	C	T	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	122299982	122299983	chr3:122299983:A:G	rs74589404	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.723219281595053	-1.163690226205454	TGAATTCCATTGT
chr3	122589303	122589304	chr3:122589304:G:A	rs11714010	G	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	123068665	123068666	chr3:123068666:A:T	rs7614797	A	T	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	123203960	123203961	chr3:123203961:G:A	rs1515371	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	123247336	123247337	chr3:123247337:T:C	rs13101217	T	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr3	123346127	123346128	chr3:123346128:C:G	rs55848018	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	123471883	123471884	chr3:123471884:C:T	rs35000036	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	123571368	123571369	chr3:123571369:T:C	rs771344513	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	123571375	123571376	chr3:123571376:A:G	rs80321176	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	123620707	123620708	chr3:123620708:C:T	rs565233007	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	123949738	123949739	chr3:123949739:C:A	rs7619302	C	A	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	124131540	124131541	chr3:124131541:T:G	rs79327587	T	G	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	124169630	124169631	chr3:124169631:G:T	rs4677919	G	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	124297151	124297152	chr3:124297152:A:G	rs13076923	A	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	124328246	124328247	chr3:124328247:G:A	rs73185299	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr3	124542785	124542786	chr3:124542786:C:T	rs78778376	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	124592488	124592489	chr3:124592489:T:C	rs13096370	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	124752249	124752250	chr3:124752250:T:A	rs56256730	T	A	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr3	124760364	124760365	chr3:124760365:C:T	rs13087417	C	T	C	Sox1.mouse_HMG_3	12	1	+	2.95818602571117	3.0439628874578726	TCACTGCCTTTGC
chr3	124860047	124860048	chr3:124860048:G:C	rs848798	G	C	G	Sox1.mouse_HMG_3	6	1	+	4.018014839937738	4.442977436716424	TCACAGGCATTGG
chr3	125130028	125130029	chr3:125130029:A:G	rs486178	A	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	125147914	125147915	chr3:125147915:T:C	rs28505072	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	125247083	125247084	chr3:125247084:T:C	rs1850506	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	125912922	125912923	chr3:125912923:C:T	rs12634512	C	T	.	Sox1.mouse_HMG_3	7	1	+	5.061853696059433	1.429386204964239	TCAATATCATGGG
chr3	125928642	125928643	chr3:125928643:A:T	rs1976459	A	T	.	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	126054594	126054595	chr3:126054595:T:C	rs6808519	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	126245539	126245540	chr3:126245540:G:A	rs1816951	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	126320341	126320342	chr3:126320342:C:A	rs78151629	C	A	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	126320343	126320344	chr3:126320344:C:A	rs9854853	C	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	126620840	126620841	chr3:126620841:G:C	rs1716620	G	C	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr3	126697904	126697905	chr3:126697905:C:T	rs73199869	C	T	C	Sox1.mouse_HMG_3	11	1	-	3.8291809249923427	-0.2806595059935555	TCAATGTCATAGG
chr3	127095003	127095004	chr3:127095004:C:T	rs62261964	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	127104595	127104596	chr3:127104596:T:A	rs17701673	T	A	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	127129596	127129597	chr3:127129597:G:A	rs13316446	G	A	G	Sox1.mouse_HMG_3	6	1	+	10.817392164938775	11.293908104593998	TCAATGGCATTGG
chr3	127443705	127443706	chr3:127443706:T:C	rs78035593	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	127452950	127452951	chr3:127452951:C:G	rs6800029	C	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	127914411	127914412	chr3:127914412:A:G	rs11716059	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	127916253	127916254	chr3:127916254:T:C	rs1427540375	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	128076002	128076003	chr3:128076003:C:T	rs189492114	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	128212496	128212497	chr3:128212497:G:A	rs2999090	G	A	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	128232715	128232716	chr3:128232716:G:A	rs2999085	G	A	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr3	128314204	128314205	chr3:128314205:G:A	rs11706908	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	128343680	128343681	chr3:128343681:G:A	rs7644685	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	128548418	128548419	chr3:128548419:A:G	rs35459994	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	128618594	128618595	chr3:128618595:A:C	rs2712430	A	C	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	128722846	128722847	chr3:128722847:T:G	rs9842941	T	G	G	Sox1.mouse_HMG_3	2	1	-	4.3625832945977905	-2.5461714847174295	TCAATTCCTGTGA
chr3	128823524	128823525	chr3:128823525:T:G	rs73198879	T	G	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	128848098	128848099	chr3:128848099:C:T	rs13088146	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	128880266	128880267	chr3:128880267:C:G	rs73207996	C	G	C	Sox1.mouse_HMG_3	6	1	+	5.45740392952902	5.032441332750334	TCCCTGCCATTGA
chr3	128926195	128926196	chr3:128926196:G:C	rs1872545	G	C	C	Sox1.mouse_HMG_3	1	1	-	5.273327081573877	-1.6294257057854682	TCAATAATGTTGA
chr3	129521851	129521852	chr3:129521852:A:G	rs544226162	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.510486861772364	0.7094596998553586	TCAATCACAGTGA
chr3	129563022	129563023	chr3:129563023:G:C	rs2713626	G	C	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	129651895	129651896	chr3:129651896:A:G	rs77017646	A	G	A	Sox1.mouse_HMG_3	3	1	-	4.805115575527125	9.441978208247704	TCATTGGCATTGC
chr3	129949940	129949941	chr3:129949941:G:A	rs907931	G	A	A	Sox1.mouse_HMG_3	10	1	-	5.065611483499831	9.700824279304443	ACAATAACATCGG
chr3	129976529	129976530	chr3:129976530:T:C	rs7645772	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	130041484	130041485	chr3:130041485:C:T	rs12186005	C	T	c	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	130088377	130088378	chr3:130088378:T:A	rs73208698	T	A	t	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	130088390	130088391	chr3:130088391:A:G	rs75131157	A	G	a	Sox1.mouse_HMG_3	6	1	-	3.8291809249923427	4.342258740102814	TCAATGTCATGGG
chr3	130109057	130109058	chr3:130109058:A:G	rs73210763	A	G	a	Sox1.mouse_HMG_3	9	1	-	8.302026616946495	1.415117109145988	ACAAAACCATTGA
chr3	130360604	130360605	chr3:130360605:T:C	rs1453263	T	C	T	Sox1.mouse_HMG_3	0	1	+	7.459439820607152	0.6072606785138659	TTACTGACATTGA
chr3	131018787	131018788	chr3:131018788:A:G	rs218503	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr3	131048162	131048163	chr3:131048163:G:A	rs116331827	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	131880442	131880443	chr3:131880443:T:C	rs6769415	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	132071740	132071741	chr3:132071741:C:T	rs11720820	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	132136521	132136522	chr3:132136522:G:A	rs61793334	G	A	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr3	132658767	132658768	chr3:132658768:T:C	rs59426843	T	C	C	Sox1.mouse_HMG_3	5	1	-	6.289566485525283	5.0568937144581945	TCACTAGCATTTA
chr3	132903057	132903058	chr3:132903058:G:A	rs62290365	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	133015932	133015933	chr3:133015933:G:A	rs1464397	G	A	A	Sox1.mouse_HMG_3	7	1	-	8.190870432287435	4.5584029411922415	TCAAGTACATTGA
chr3	133463912	133463913	chr3:133463913:C:T	rs73213705	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.774772624471591	1.6649321934856935	TAAATTACATTGT
chr3	133480635	133480636	chr3:133480636:T:C	rs55635040	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr3	133536535	133536536	chr3:133536536:G:A	rs73861138	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	133536611	133536612	chr3:133536612:C:T	rs191780654	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	133718933	133718934	chr3:133718934:A:G	rs4287912	A	G	g	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	133894669	133894670	chr3:133894670:G:A	rs2692679	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	133924157	133924158	chr3:133924158:T:C	rs9289459	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	133945170	133945171	chr3:133945171:T:C	rs150345667	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.717217289639178	-1.1696922181613296	TCGATTCCATTGT
chr3	133976659	133976660	chr3:133976660:G:A	rs4854781	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	134078146	134078147	chr3:134078147:A:G	rs73861314	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.300913450561065	-1.585996057239442	TCAAGTGCATTGT
chr3	134078162	134078163	chr3:134078163:G:A	rs9846898	G	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	134253006	134253007	chr3:134253007:A:C	rs145997461	A	C	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	134361818	134361819	chr3:134361819:A:G	rs1077718	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr3	134382598	134382599	chr3:134382599:G:A	rs35304308	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	134494695	134494696	chr3:134494696:C:T	rs9871305	C	T	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr3	135145686	135145687	chr3:135145687:G:A	rs3772647	G	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	135216810	135216811	chr3:135216811:A:G	rs34744364	A	G	g	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr3	135216830	135216831	chr3:135216831:T:C	rs28707535	T	C	c	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	135263266	135263267	chr3:135263267:G:A	rs34338595	G	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	136142974	136142975	chr3:136142975:G:A	rs572279825	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	136151261	136151262	chr3:136151262:C:T	rs137871177	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	136336616	136336617	chr3:136336617:T:C	rs8045	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	136378733	136378734	chr3:136378734:T:C	rs655836	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	136801438	136801439	chr3:136801439:C:G	rs60574021	C	G	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	136933291	136933292	chr3:136933292:A:G	rs73231966	A	G	A	Sox1.mouse_HMG_3	9	1	-	13.349554967036607	6.462645459236098	TCAATACCATTGT
chr3	136943760	136943761	chr3:136943761:G:A	rs9833952	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr3	137033708	137033709	chr3:137033709:T:G	rs754694	T	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	137061816	137061817	chr3:137061817:C:A	chr3:137061817:C:A	C	A	C	Sox1.mouse_HMG_3	7	1	+	4.851348613087694	-0.4391525722603362	TCAACTCCATTGG
chr3	137066954	137066955	chr3:137066955:G:A	rs1023765	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	138042240	138042241	chr3:138042241:T:G	rs139015678	T	G	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	138561400	138561401	chr3:138561401:G:A	rs680070	G	A	A	Sox1.mouse_HMG_3	9	1	+	4.581747135270101	1.4629126645821267	TCAATATCAGAGA
chr3	138594542	138594543	chr3:138594543:C:A	rs140476664	C	A	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	140022304	140022305	chr3:140022305:C:T	rs12632454	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	140288620	140288621	chr3:140288621:A:G	rs62268001	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.837282027955107	-1.0496274798454004	TCAAAACAATTGA
chr3	140365946	140365947	chr3:140365947:T:G	rs3943277	T	G	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	140442997	140442998	chr3:140442998:A:C	rs11712249	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	140522280	140522281	chr3:140522281:A:T	rs76755185	A	T	A	Sox1.mouse_HMG_3	8	1	+	5.296124170781237	-1.6126306085339839	TCACTTTCATTCC
chr3	140534119	140534120	chr3:140534120:C:T	rs16850427	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	140540594	140540595	chr3:140540595:C:T	rs349551	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr3	141303767	141303768	chr3:141303768:A:G	rs62281976	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	141303793	141303794	chr3:141303794:C:T	rs75547612	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	141401954	141401955	chr3:141401955:G:C	chr3:141401955:G:C	G	C	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	141424777	141424778	chr3:141424778:A:G	rs79197573	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	141465355	141465356	chr3:141465356:T:C	rs75088737	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	141488255	141488256	chr3:141488256:G:T	chr3:141488256:G:T	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	141538797	141538798	chr3:141538798:A:G	rs114672208	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	141710566	141710567	chr3:141710567:A:G	rs16851689	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr3	141715938	141715939	chr3:141715939:T:A	rs111515372	T	A	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	141768632	141768633	chr3:141768633:C:T	rs61278509	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	142073588	142073589	chr3:142073589:G:A	rs73232677	G	A	g	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	142115941	142115942	chr3:142115942:C:T	rs62284574	C	T	T	Sox1.mouse_HMG_3	1	1	+	9.045057920735742	4.086785689622117	TCAATTATATTGT
chr3	142147944	142147945	chr3:142147945:C:T	rs73236053	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	142802779	142802780	chr3:142802780:C:T	rs45497994	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	142896990	142896991	chr3:142896991:A:G	rs77195961	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	142897032	142897033	chr3:142897033:G:C	rs73864501	G	C	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	142905697	142905698	chr3:142905698:G:T	rs80211149	G	T	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	143145321	143145322	chr3:143145322:G:T	chr3:143145322:G:T	G	T	G	Sox1.mouse_HMG_3	6	1	+	6.10782228719523	6.019707068863443	TCACTAGCATTCC
chr3	143158384	143158385	chr3:143158385:A:G	rs10804687	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	143224182	143224183	chr3:143224183:A:G	rs6440154	A	G	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	143388428	143388429	chr3:143388429:C:G	rs56152928	C	G	C	Sox1.mouse_HMG_3	7	1	+	6.351967108772076	-0.5277692816925361	TCACTTCCATTAT
chr3	143508459	143508460	chr3:143508460:G:A	rs79803693	G	A	G	Sox1.mouse_HMG_3	5	1	+	6.098865767913857	7.331538538980945	TCACTGCCAGTGC
chr3	143567501	143567502	chr3:143567502:C:T	rs1440730	C	T	T	Sox1.mouse_HMG_3	6	1	-	4.88859789627557	5.365113835930792	ACAAGTGCATTGA
chr3	143736376	143736377	chr3:143736377:G:A	rs73154705	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	143763273	143763274	chr3:143763274:C:T	rs77716158	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	144037344	144037345	chr3:144037345:C:G	rs1025984	C	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	144263718	144263719	chr3:144263719:T:C	rs17670978	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	144385287	144385288	chr3:144385288:T:C	rs1725546	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	144556722	144556723	chr3:144556723:T:C	rs115279579	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	145002912	145002913	chr3:145002913:C:T	rs9875246	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.847365205245339	0.7375247742594402	ACCATGACATTGA
chr3	145089087	145089088	chr3:145089088:T:C	rs73874039	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	145241965	145241966	chr3:145241966:T:C	rs1822907	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	145313893	145313894	chr3:145313894:C:A	rs6806923	C	A	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	145533820	145533821	chr3:145533821:G:A	chr3:145533821:G:A	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	145533841	145533842	chr3:145533842:C:T	rs56741139	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	145558974	145558975	chr3:145558975:A:G	rs1632389	A	G	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr3	145903539	145903540	chr3:145903540:T:C	rs6769191	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.5068495983157035	-2.3800599094848036	TCAAGTCTATTGA
chr3	146092223	146092224	chr3:146092224:A:C	rs3792340	A	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	146094177	146094178	chr3:146094178:A:G	rs116539997	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	146117721	146117722	chr3:146117722:T:G	rs6799720	T	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	146234930	146234931	chr3:146234931:T:C	rs9840954	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.514959264361433	-1.3719502434390747	TAACTGACATTGA
chr3	146234936	146234937	chr3:146234937:T:C	rs182524644	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	146507061	146507062	chr3:146507062:A:G	rs76838671	A	G	A	Sox1.mouse_HMG_3	2	1	+	12.591748550084231	5.682993770769013	TCAATTACATTGC
chr3	146559679	146559680	chr3:146559680:A:G	rs1876412	A	G	a	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr3	146640423	146640424	chr3:146640424:T:C	rs191248912	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.349822172382636	1.4629126645821267	TCAATATCATAGA
chr3	146681329	146681330	chr3:146681330:T:G	rs6804783	T	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	146682088	146682089	chr3:146682089:T:C	rs17370212	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	146697306	146697307	chr3:146697307:A:T	rs76261152	A	T	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	146709491	146709492	chr3:146709492:A:T	rs1397886	A	T	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	147114329	147114330	chr3:147114330:T:C	rs77722597	T	C	T	Sox1.mouse_HMG_3	6	1	+	8.726636720940238	9.239714536050709	TCAATATCATTAT
chr3	147416244	147416245	chr3:147416245:A:G	rs9833875	A	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	147416251	147416252	chr3:147416252:A:G	rs12107172	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	147937894	147937895	chr3:147937895:A:T	rs72999612	A	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	148601180	148601181	chr3:148601181:T:C	rs114499406	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	148793009	148793010	chr3:148793010:C:T	rs6803439	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	148866499	148866500	chr3:148866500:G:A	rs80245122	G	A	g	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	148968853	148968854	chr3:148968854:C:A	rs6764975	C	A	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	149049328	149049329	chr3:149049329:C:T	rs12488819	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	149324229	149324230	chr3:149324230:G:A	rs115360733	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	149524005	149524006	chr3:149524006:T:C	rs719073	T	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	149540199	149540200	chr3:149540200:C:G	rs114457234	C	G	C	Sox1.mouse_HMG_3	11	1	-	5.3488303300824285	0.7820016379628654	GCAATTGCATTGT
chr3	149548883	149548884	chr3:149548884:T:C	rs9836653	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	149615759	149615760	chr3:149615760:G:A	rs7610908	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr3	149977604	149977605	chr3:149977605:G:A	rs35233622	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	150075042	150075043	chr3:150075043:C:T	rs57249105	C	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	150142263	150142264	chr3:150142264:C:T	rs6786145	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	150254049	150254050	chr3:150254050:A:G	rs6440661	A	G	a	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	150681175	150681176	chr3:150681176:C:G	rs73152545	C	G	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr3	151230845	151230846	chr3:151230846:A:C	rs111841927	A	C	A	Sox1.mouse_HMG_3	4	1	-	5.361668538285041	-1.5384274833296059	TCACTGACAGTGG
chr3	151295107	151295108	chr3:151295108:C:T	rs9819885	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	151468529	151468530	chr3:151468530:G:T	rs140503762	G	T	G	Sox1.mouse_HMG_3	7	1	-	8.007041764983619	2.7165405796355895	TCAATGCCATTAT
chr3	151468544	151468545	chr3:151468545:C:T	rs184639055	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	151798604	151798605	chr3:151798605:T:C	rs73166965	T	C	-	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	152209104	152209105	chr3:152209105:C:G	rs323630	C	G	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr3	152298671	152298672	chr3:152298672:G:T	rs17368404	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	152305100	152305101	chr3:152305101:C:T	rs6784925	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	152403931	152403932	chr3:152403932:A:T	rs16864262	A	T	A	Sox1.mouse_HMG_3	4	1	-	4.406998596793493	-0.2282141990111224	TCAATGACACTGG
chr3	152606320	152606321	chr3:152606321:T:G	rs2141601	T	G	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	152606346	152606347	chr3:152606347:T:C	rs2141602	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.741630043472645	-0.14527946432786254	TCTCTAACATTGA
chr3	152997930	152997931	chr3:152997931:T:C	rs2049172	T	C	C	Sox1.mouse_HMG_3	10	1	+	3.9086373856235563	-0.7265754101810578	TCCATGGCATTGG
chr3	153094614	153094615	chr3:153094615:T:A	rs9877520	T	A	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	153131119	153131120	chr3:153131120:G:A	rs9865931	G	A	g	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	153281589	153281590	chr3:153281590:T:G	rs6799941	T	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	153296206	153296207	chr3:153296207:T:A	rs7641790	T	A	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	153398088	153398089	chr3:153398089:A:C	rs35123189	A	C	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	153624998	153624999	chr3:153624999:T:C	rs566925389	T	C	T	Sox1.mouse_HMG_3	12	1	+	6.167747981502563	6.0819711197558615	ACAATTCTATTGT
chr3	154022794	154022795	chr3:154022795:T:C	rs114595804	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	154241238	154241239	chr3:154241239:G:T	rs181443	G	T	G	Sox1.mouse_HMG_3	1	1	-	5.065611483499831	-1.8371413038595141	ACAAAAACATTGG
chr3	154367210	154367211	chr3:154367211:T:C	rs187778160	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.050622010782526	0.24959484886551975	TCAATATTATTCA
chr3	154939689	154939690	chr3:154939690:A:G	rs76250801	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	155159193	155159194	chr3:155159194:A:G	rs9849573	A	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	155420856	155420857	chr3:155420857:G:C	rs147703383	G	C	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	155447842	155447843	chr3:155447843:G:A	rs74804123	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.988339074028612	1.0300668429149862	TCACTTCCACTGA
chr3	155753259	155753260	chr3:155753260:T:C	rs9818179	T	C	T	Sox1.mouse_HMG_3	10	1	+	12.027117392097223	7.391904596292608	TCAATTTCATTGC
chr3	156216789	156216790	chr3:156216790:T:G	rs188443344	T	G	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	156341458	156341459	chr3:156341459:C:A	rs142225903	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr3	156472308	156472309	chr3:156472309:C:T	rs564549000	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	156543289	156543290	chr3:156543290:T:C	rs145403423	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.795954141683171	-2.0050730202338336	TCCATAACATTAA
chr3	156561140	156561141	chr3:156561141:A:G	rs6808173	A	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	156790361	156790362	chr3:156790362:A:T	rs343993	A	T	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr3	156796450	156796451	chr3:156796451:T:C	rs73019748	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	157076117	157076118	chr3:157076118:C:T	rs73170826	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	157099726	157099727	chr3:157099727:C:G	rs2306532	C	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	157104028	157104029	chr3:157104029:T:C	rs6805954	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	157161022	157161023	chr3:157161023:G:A	rs879945711	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	157330554	157330555	chr3:157330555:C:T	rs12635316	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	157469682	157469683	chr3:157469683:A:G	rs139929911	A	G	a	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	157469704	157469705	chr3:157469705:C:A	rs2316337	C	A	c	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr3	158104879	158104880	chr3:158104880:T:C	rs1915940	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	158378820	158378821	chr3:158378821:C:T	rs112900749	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	158768446	158768447	chr3:158768447:G:A	rs776227757	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	159310898	159310899	chr3:159310899:C:T	rs2595253	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	159604755	159604756	chr3:159604756:G:A	rs16830510	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr3	159650791	159650792	chr3:159650792:T:C	rs1978830	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	159791221	159791222	chr3:159791222:G:A	rs765234567	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	159882299	159882300	chr3:159882300:T:C	rs33052	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr3	159945181	159945182	chr3:159945182:C:T	rs9818736	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.582129881373971	0.9496623902787784	ATACTGCCATTGA
chr3	160357867	160357868	chr3:160357868:G:A	rs114649768	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	160404447	160404448	chr3:160404448:A:G	chr3:160404448:A:G	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	160477940	160477941	chr3:160477941:T:C	rs13314803	T	C	t	Sox1.mouse_HMG_3	12	1	-	7.37436741994599	4.086398943622788	TCACTGGCATTCA
chr3	160837455	160837456	chr3:160837456:G:A	rs145744522	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	160843131	160843132	chr3:160843132:G:A	rs78597462	G	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	160893539	160893540	chr3:160893540:T:G	rs1374789	T	G	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr3	160984027	160984028	chr3:160984028:G:A	rs6763532	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	161108941	161108942	chr3:161108942:T:G	rs6775897	T	G	T	Sox1.mouse_HMG_3	8	1	-	5.488827043630177	-1.4199277356850437	ACAATGACAGTGC
chr3	161291874	161291875	chr3:161291875:G:A	rs74462689	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	161382881	161382882	chr3:161382882:T:C	rs459923	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	161650276	161650277	chr3:161650277:C:A	rs9824937	C	A	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	161671024	161671025	chr3:161671025:C:T	rs1588908	C	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	162073610	162073611	chr3:162073611:T:C	rs12696134	T	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr3	162094623	162094624	chr3:162094624:T:C	rs4465957	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	162100955	162100956	chr3:162100956:T:G	rs1397227	T	G	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	162223074	162223075	chr3:162223075:G:A	rs9867096	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	162936635	162936636	chr3:162936636:A:G	rs3912608	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	163180822	163180823	chr3:163180823:T:C	rs1873643	T	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr3	163214835	163214836	chr3:163214836:A:G	rs4855204	A	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	163916974	163916975	chr3:163916975:T:A	rs574323895	T	A	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	163916976	163916977	chr3:163916977:G:A	rs114917840	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	163954913	163954914	chr3:163954914:C:T	rs12489788	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	165323327	165323328	chr3:165323328:C:A	rs9841819	C	A	C	Sox1.mouse_HMG_3	7	1	+	5.94636357373852	0.6558623883904893	ACAATTCCAGTGC
chr3	166110086	166110087	chr3:166110087:C:G	rs4299439	C	G	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	166223536	166223537	chr3:166223537:T:C	rs34423841	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.273772861517996	-0.6131366462825125	TCACTAGCATGGA
chr3	166243773	166243774	chr3:166243774:T:C	rs1348072	T	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	166330839	166330840	chr3:166330840:A:G	rs2863372	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	166857610	166857611	chr3:166857611:A:T	rs13099376	A	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	166943009	166943010	chr3:166943010:T:G	rs6780209	T	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	167067916	167067917	chr3:167067917:A:G	rs1464281	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	167626526	167626527	chr3:167626527:A:T	rs4484191	A	T	T	Sox1.mouse_HMG_3	4	1	+	5.445928084107305	10.081140879911917	TTAAATCCATTGA
chr3	167651340	167651341	chr3:167651341:A:G	rs2420024	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	167750154	167750155	chr3:167750155:C:T	rs7631183	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr3	167750848	167750849	chr3:167750849:T:C	rs10513635	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.313560493054256	-1.5951942862609658	ACAATTCCATAGA
chr3	168157378	168157379	chr3:168157379:G:A	rs3851387	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.216786174354869	1.5843186832596774	TCAATGCCATGGT
chr3	168211888	168211889	chr3:168211889:C:T	rs16851992	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr3	168220099	168220100	chr3:168220100:G:T	rs7624807	G	T	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	168802941	168802942	chr3:168802942:A:G	rs2421449	A	G	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	168804003	168804004	chr3:168804004:T:G	rs526766	T	G	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	168863702	168863703	chr3:168863703:A:G	rs7633280	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr3	169666412	169666413	chr3:169666413:T:C	rs116153715	T	C	t	Sox1.mouse_HMG_3	6	1	+	7.395121025554516	7.908198840664987	TCAATATCATTCG
chr3	170007270	170007271	chr3:170007271:G:A	rs4955582	G	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	170007292	170007293	chr3:170007293:T:C	rs28436143	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.555088651520885	-1.3536661277943345	TTACTTACATTGT
chr3	170007300	170007301	chr3:170007301:G:A	rs4955583	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr3	170197164	170197165	chr3:170197165:T:G	rs1798239	T	G	G	Sox1.mouse_HMG_3	3	1	-	13.349554967036607	11.18539043784018	TCAATACCATTGT
chr3	170222153	170222154	chr3:170222154:G:C	rs1039055987	G	C	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	170222180	170222181	chr3:170222181:G:T	chr3:170222181:G:T	G	T	G	Sox1.mouse_HMG_3	11	1	+	4.276635658524961	-2.6076667390823984	TCCCTACCATTGT
chr3	170730247	170730248	chr3:170730248:T:C	rs17289605	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.441327599800456	-2.4674271795147646	TCATTGCCATTGG
chr3	171303966	171303967	chr3:171303967:A:G	rs2172394	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	171561874	171561875	chr3:171561875:T:C	rs17419458	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.524065576025992	-1.3846892032892293	ACAATATCATAGA
chr3	171705175	171705176	chr3:171705176:T:C	rs7632491	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	171732357	171732358	chr3:171732358:T:C	rs1921345	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr3	171732389	171732390	chr3:171732390:G:T	rs1921344	G	T	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	171834610	171834611	chr3:171834611:T:C	rs561937968	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr3	171874473	171874474	chr3:171874474:A:T	rs79455843	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	172085188	172085189	chr3:172085189:C:T	rs9841998	C	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	172088536	172088537	chr3:172088537:T:C	rs9824019	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr3	172203778	172203779	chr3:172203779:C:T	rs9854411	C	T	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	172691439	172691440	chr3:172691440:T:G	rs77399448	T	G	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	172949679	172949680	chr3:172949680:G:C	rs7632946	G	C	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	173584009	173584010	chr3:173584010:T:C	rs113109960	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	173661812	173661813	chr3:173661813:A:G	rs1502483	A	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr3	173662169	173662170	chr3:173662170:T:A	rs4894451	T	A	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	174156594	174156595	chr3:174156595:G:A	rs1421428	G	A	G	Sox1.mouse_HMG_3	1	1	-	6.028484633435889	1.0702124023222617	ACAATACCTTTGA
chr3	174216858	174216859	chr3:174216859:G:A	rs6764226	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr3	174404956	174404957	chr3:174404957:C:T	rs60437291	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	174618957	174618958	chr3:174618958:C:T	rs541566	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	174618969	174618970	chr3:174618970:G:A	rs576894	G	A	A	Sox1.mouse_HMG_3	3	1	-	8.963618684106713	4.326756051386132	TCACAACCATTGA
chr3	174701093	174701094	chr3:174701094:G:C	rs9866752	G	C	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	174776482	174776483	chr3:174776483:A:G	rs146065168	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	174857517	174857518	chr3:174857518:C:A	rs62284943	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	175146253	175146254	chr3:175146254:C:T	rs9872550	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr3	175151045	175151046	chr3:175151046:C:G	rs936481	C	G	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	175199209	175199210	chr3:175199210:C:A	rs9883893	C	A	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr3	175231752	175231753	chr3:175231753:C:A	rs35675620	C	A	A	Sox1.mouse_HMG_3	3	1	-	9.013522190067285	9.013522190067285	TCAGTAACATTGA
chr3	175231765	175231766	chr3:175231766:A:G	rs6795681	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr3	175301807	175301808	chr3:175301808:T:A	rs12633108	T	A	T	Sox1.mouse_HMG_3	5	1	-	6.982237907097476	6.258655009015268	TCAAAATTATTGA
chr3	175411831	175411832	chr3:175411832:A:T	rs9879366	A	T	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	175685789	175685790	chr3:175685790:G:A	rs150823927	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr3	176403792	176403793	chr3:176403793:A:C	rs2626512	A	C	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	176595472	176595473	chr3:176595473:T:C	rs9848490	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	177015369	177015370	chr3:177015370:G:T	rs10936925	G	T	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr3	177104887	177104888	chr3:177104888:T:G	rs1201289	T	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	177106287	177106288	chr3:177106288:A:C	rs62296570	A	C	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	177193682	177193683	chr3:177193683:T:C	rs10936936	T	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	177346096	177346097	chr3:177346097:C:T	rs111838844	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	177468634	177468635	chr3:177468635:C:A	rs150704602	C	A	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	177468839	177468840	chr3:177468840:T:C	rs1392218	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr3	177468860	177468861	chr3:177468861:G:C	rs1392217	G	C	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	177570054	177570055	chr3:177570055:T:C	rs11707350	T	C	T	Sox1.mouse_HMG_3	5	1	-	6.1894154306266085	4.95674265955952	ACACAAACATTGA
chr3	177596132	177596133	chr3:177596133:G:A	rs55750640	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	177624679	177624680	chr3:177624680:T:C	rs1875102	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	177773453	177773454	chr3:177773454:T:C	rs9829938	T	C	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	177816844	177816845	chr3:177816845:T:C	rs533362556	T	C	T	Sox1.mouse_HMG_3	4	1	+	9.289476014072367	2.389379992457721	ACAATTGCATTGC
chr3	177852045	177852046	chr3:177852046:C:T	rs74732742	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	178097737	178097738	chr3:178097738:C:A	chr3:178097738:C:A	C	A	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr3	178174360	178174361	chr3:178174361:T:C	rs75380256	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	178387218	178387219	chr3:178387219:T:C	rs6804751	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr3	178568475	178568476	chr3:178568476:A:G	rs16829780	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	178754973	178754974	chr3:178754974:G:A	rs74612618	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	179105474	179105475	chr3:179105475:A:G	rs12497857	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr3	179651330	179651331	chr3:179651331:A:C	rs9826893	A	C	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr3	179658003	179658004	chr3:179658004:G:C	rs556868621	G	C	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	179713809	179713810	chr3:179713810:T:C	rs540621407	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	180601647	180601648	chr3:180601648:A:G	rs78284878	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.772469354689434	-1.136285424625786	TCACTAACAGTAA
chr3	180601662	180601663	chr3:180601663:G:A	rs73051751	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	181897724	181897725	chr3:181897725:G:C	rs62291304	G	C	-	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	182358858	182358859	chr3:182358859:A:G	rs16833062	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr3	182437273	182437274	chr3:182437274:A:G	rs17826722	A	G	A	Sox1.mouse_HMG_3	4	1	-	6.016803445332714	-0.883292576281933	ACAATACTATTGG
chr3	182753336	182753337	chr3:182753337:A:G	rs2717273	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	182761193	182761194	chr3:182761194:C:T	chr3:182761194:C:T	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	182803338	182803339	chr3:182803339:C:T	rs12696497	C	T	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	182803354	182803355	chr3:182803355:G:T	rs12696498	G	T	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr3	183052478	183052479	chr3:183052479:T:C	rs62293212	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	183144346	183144347	chr3:183144347:A:G	rs79155994	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	183252305	183252306	chr3:183252306:A:G	rs6782547	A	G	G	Sox1.mouse_HMG_3	9	1	+	4.9661713859332615	8.085005856621235	TCACTGTCAATGA
chr3	183329066	183329067	chr3:183329067:T:C	rs60249767	T	C	T	Sox1.mouse_HMG_3	5	1	+	5.792371225083196	1.9799666700660103	TCACATACATTGC
chr3	183386033	183386034	chr3:183386034:T:C	rs16857427	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr3	184353228	184353229	chr3:184353229:G:A	rs41266265	G	A	g	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr3	184353230	184353231	chr3:184353231:T:C	rs11920716	T	C	t	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	184449794	184449795	chr3:184449795:C:T	rs12496289	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	184468226	184468227	chr3:184468227:C:A	rs9841832	C	A	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr3	185021337	185021338	chr3:185021338:G:A	rs4605520	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr3	185046642	185046643	chr3:185046643:C:T	rs62289505	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	185582606	185582607	chr3:185582607:G:A	rs7651346	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr3	185814062	185814063	chr3:185814063:C:T	rs13321016	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr3	185919951	185919952	chr3:185919952:T:C	rs16860329	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr3	185979950	185979951	chr3:185979951:T:C	rs1023179995	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr3	186496361	186496362	chr3:186496362:A:C	rs9834116	A	C	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr3	186840082	186840083	chr3:186840083:A:G	rs76071583	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.367408376929049	-1.5195011308714583	TCAGTGACATTGT
chr3	186860684	186860685	chr3:186860685:C:T	rs7639352	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	186964929	186964930	chr3:186964930:G:A	rs57914650	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.47786836911129	1.8454008780160973	TCACTTTCATTTA
chr3	186966504	186966505	chr3:186966505:C:G	rs3864107	C	G	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	186982451	186982452	chr3:186982452:T:G	rs4686826	T	G	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	187507729	187507730	chr3:187507730:C:T	rs7631523	C	T	T	Sox1.mouse_HMG_3	11	1	-	8.90579457266907	4.795954141683172	TCAATAACGTTGA
chr3	187699925	187699926	chr3:187699926:C:T	rs11928175	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	187747748	187747749	chr3:187747749:T:C	rs140670212	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	187829125	187829126	chr3:187829126:C:T	rs73886595	C	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	187839702	187839703	chr3:187839703:T:C	rs59161098	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.497276084302383	0.8620632884977684	TCACTGATATTGG
chr3	187850404	187850405	chr3:187850405:G:A	rs6791207	G	A	G	Sox1.mouse_HMG_3	6	1	-	7.630227216426016	7.117149401315546	TCAATGCCATGGA
chr3	187878955	187878956	chr3:187878956:G:T	rs6788294	G	T	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	187887526	187887527	chr3:187887527:C:T	rs6444265	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr3	187900351	187900352	chr3:187900352:T:C	rs546343	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr3	187949269	187949270	chr3:187949270:A:G	rs113203363	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	187968052	187968053	chr3:187968053:T:C	rs6797424	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr3	188037159	188037160	chr3:188037160:C:A	rs2378358	C	A	A	Sox1.mouse_HMG_3	1	1	+	7.4642766421032505	0.5615238547439074	TCAATGCCATTCC
chr3	188155120	188155121	chr3:188155121:A:G	rs76444825	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	188204639	188204640	chr3:188204640:G:A	rs9855518	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	188341654	188341655	chr3:188341655:A:G	rs13076750	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr3	188542914	188542915	chr3:188542915:T:C	rs1426260	T	C	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr3	188635576	188635577	chr3:188635577:T:C	rs1828950	T	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr3	188683142	188683143	chr3:188683143:G:A	rs75835093	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.2317280092217775	5.317504870968479	TCACAGCCATTGC
chr3	188697189	188697190	chr3:188697190:A:T	rs115315941	A	T	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	188707513	188707514	chr3:188707514:A:G	rs78983178	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.53700625041206	1.6500967426115534	TCAGTAGCATTGA
chr3	188707517	188707518	chr3:188707518:T:C	rs1409546222	T	C	T	Sox1.mouse_HMG_3	5	1	-	8.53700625041206	7.304333479344974	TCAGTAGCATTGA
chr3	188773118	188773119	chr3:188773119:G:T	rs1249030444	G	T	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr3	188889281	188889282	chr3:188889282:C:T	rs76971802	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	188914607	188914608	chr3:188914608:A:C	rs77557752	A	C	C	Sox1.mouse_HMG_3	2	1	+	5.118362612782004	-1.790392166533216	TCAATTTCCTTGC
chr3	189205579	189205580	chr3:189205580:A:G	rs6783147	A	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr3	189334757	189334758	chr3:189334758:C:T	rs78307847	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	189364688	189364689	chr3:189364689:T:C	rs13068281	T	C	T	Sox1.mouse_HMG_3	5	1	-	6.034486625391764	4.801813854324676	AAAATACCATTGA
chr3	189393645	189393646	chr3:189393646:C:A	rs150647469	C	A	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr3	189512414	189512415	chr3:189512415:A:G	rs1364593	A	G	G	Sox1.mouse_HMG_3	12	1	-	5.3488303300824285	5.263053468335727	CCAATTGCATTGT
chr3	189531814	189531815	chr3:189531815:A:G	rs7615576	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr3	189562847	189562848	chr3:189562848:G:A	rs9859170	G	A	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr3	189664376	189664377	chr3:189664377:C:G	rs12495269	C	G	C	Sox1.mouse_HMG_3	11	1	+	6.612507864060111	11.179336556179674	TCAAAAACATTCA
chr3	189861721	189861722	chr3:189861722:G:A	rs17448036	G	A	A	Sox1.mouse_HMG_3	12	1	-	5.7048390422837265	5.790615904030428	TCAATTACAATGC
chr3	190201217	190201218	chr3:190201218:G:A	rs9877609	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr3	190338793	190338794	chr3:190338794:G:T	rs77165019	G	T	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr3	190338838	190338839	chr3:190338839:G:A	rs60035439	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr3	190370140	190370141	chr3:190370141:C:T	rs183339077	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	190370143	190370144	chr3:190370144:T:C	rs1425104	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr3	190432405	190432406	chr3:190432406:T:C	rs71310863	T	C	T	Sox1.mouse_HMG_3	5	1	-	6.105483930610147	4.872811159543058	TCACTATCATTCT
chr3	190432409	190432410	chr3:190432410:G:T	rs1346017	G	T	G	Sox1.mouse_HMG_3	1	1	-	6.105483930610147	-0.7972688567491972	TCACTATCATTCT
chr3	190807726	190807727	chr3:190807727:A:G	rs9870207	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	191356107	191356108	chr3:191356108:G:A	rs9985271	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr3	191392530	191392531	chr3:191392531:G:A	rs529523	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.655892809600335	5.741669671347038	TCAATTCCATTTC
chr3	191392546	191392547	chr3:191392547:A:G	rs80206934	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr3	191600380	191600381	chr3:191600381:A:G	rs6444581	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	191926932	191926933	chr3:191926933:A:G	rs11914654	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.329612040276652	-0.30560075552796273	TCTATTTCATTGG
chr3	192091634	192091635	chr3:192091635:G:A	rs62293431	G	A	G	Sox1.mouse_HMG_3	7	1	-	7.331538538980945	3.6990710478857527	TCACTACCAGTGC
chr3	192373012	192373013	chr3:192373013:T:A	rs1014089327	T	A	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr3	192449188	192449189	chr3:192449189:C:T	rs141499968	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr3	192658192	192658193	chr3:192658193:T:C	rs6798557	T	C	C	Sox1.mouse_HMG_3	5	1	+	5.362457070186094	1.5500525151689095	AAAATTACATTGA
chr3	192697756	192697757	chr3:192697757:A:T	rs1394834	A	T	a	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr3	192797767	192797768	chr3:192797768:G:A	rs1061860	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr3	192827410	192827411	chr3:192827411:G:A	rs138476913	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr3	192827412	192827413	chr3:192827413:C:T	rs7626121	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr3	193351629	193351630	chr3:193351630:C:T	rs6444711	C	T	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr3	193401108	193401109	chr3:193401109:G:T	rs62285691	G	T	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr3	193482132	193482133	chr3:193482133:G:C	rs9836525	G	C	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr3	193585745	193585746	chr3:193585746:G:A	rs13064790	G	A	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr3	193701835	193701836	chr3:193701836:C:T	rs73069792	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	193712336	193712337	chr3:193712337:A:G	chr3:193712337:A:G	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.203602712706601	1.316693204906096	TCAATAGCATCGC
chr3	193762770	193762771	chr3:193762771:T:C	rs11928384	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr3	193772461	193772462	chr3:193772462:T:C	rs79093916	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.6311180113118375	-2.169909150605169	TCAATGTCACTGC
chr3	193865502	193865503	chr3:193865503:T:C	rs115293330	T	C	T	Sox1.mouse_HMG_3	9	1	+	13.598831479911325	6.7119219721108205	TCACTACCATTGA
chr3	193932301	193932302	chr3:193932302:C:T	rs12485924	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.268339517231407	0.31006728611778134	TCAATGACATAGT
chr3	194164936	194164937	chr3:194164937:A:G	rs28848300	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr3	194246507	194246508	chr3:194246508:C:G	rs891571966	C	G	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr3	194353093	194353094	chr3:194353094:C:A	rs34234514	C	A	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr3	194383441	194383442	chr3:194383442:G:A	rs114068214	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	194566268	194566269	chr3:194566269:G:T	chr3:194566269:G:T	G	T	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	194572033	194572034	chr3:194572034:C:G	rs7648517	C	G	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	194711369	194711370	chr3:194711370:A:G	rs766247339	A	G	A	Sox1.mouse_HMG_3	4	1	+	7.990759273149784	5.725876047339751	TCAAATCCATTGT
chr3	194723856	194723857	chr3:194723857:A:C	rs12330748	A	C	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr3	194723866	194723867	chr3:194723867:G:T	rs59552148	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr3	194723867	194723868	chr3:194723868:C:T	rs57512099	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr3	194741278	194741279	chr3:194741279:G:A	rs115501410	G	A	g	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr3	194797799	194797800	chr3:194797800:A:G	rs111270445	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.98429800983285	-0.8167291520841544	GCAATATCATTGT
chr3	194871870	194871871	chr3:194871871:A:G	rs143238307	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.1825626554847055	-1.6184645064323007	TCAATGACATGGC
chr3	194871895	194871896	chr3:194871896:T:C	rs67144479	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr3	194949069	194949070	chr3:194949070:T:C	rs34686380	T	C	C	Sox1.mouse_HMG_3	0	1	-	4.8004826779437835	0.7740601322071419	ACAAGTTCATTGA
chr3	195068211	195068212	chr3:195068212:A:G	rs79640414	A	G	A	Sox1.mouse_HMG_3	0	1	-	11.24235476171746	4.390175619624177	TCAATGCCATTGG
chr3	195098241	195098242	chr3:195098242:T:A	rs56371459	T	A	T	Sox1.mouse_HMG_3	2	1	-	7.831355681079655	0.9226009017644365	TCACTGGCATTAA
chr3	195242464	195242465	chr3:195242465:T:C	rs544503982	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr3	195337963	195337964	chr3:195337964:T:C	rs113179685	T	C	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr3	195668765	195668766	chr3:195668766:C:G	rs9847909	C	G	-	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr3	195700805	195700806	chr3:195700806:A:G	rs892318199	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr3	195903940	195903941	chr3:195903941:C:T	rs6784831	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr3	196019617	196019618	chr3:196019618:G:A	rs7653845	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.294768989699401	0.3364967585857761	TCACTCCCAGTGA
chr3	196019637	196019638	chr3:196019638:G:A	rs769711872	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr3	196021857	196021858	chr3:196021858:C:T	rs7624638	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr3	196278357	196278358	chr3:196278358:T:C	rs3772109	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr3	196501640	196501641	chr3:196501641:G:A	rs73219648	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr3	196508319	196508320	chr3:196508320:A:G	rs73891273	A	G	A	Sox1.mouse_HMG_3	8	1	+	15.039413111025542	8.130658331710324	TCAATTCCATTGA
chr3	196835246	196835247	chr3:196835247:G:A	rs76062399	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.475261258918142	0.8383986261975604	TCACTTTCAATGA
chr3	196835254	196835255	chr3:196835255:T:A	rs7653770	T	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr3	196893972	196893973	chr3:196893973:G:A	rs6798086	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr3	196960016	196960017	chr3:196960017:C:T	rs73208209	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr3	197485852	197485853	chr3:197485853:C:T	rs9824358	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr3	197601624	197601625	chr3:197601625:G:C	rs73087503	G	C	.	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr3	197808183	197808184	chr3:197808184:G:A	rs570303722	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr4	585579	585580	chr4:585580:T:C	rs35006826	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	787521	787522	chr4:787522:A:G	rs190149527	A	G	a	Sox1.mouse_HMG_3	12	1	+	4.3712420522983635	1.0832735759751615	TCAAGTCCAGTGA
chr4	1064689	1064690	chr4:1064690:T:G	rs7669399	T	G	T	Sox1.mouse_HMG_3	12	1	-	7.036648740881592	4.537430837063743	TTAATACCAGTGA
chr4	1064712	1064713	chr4:1064713:G:A	rs7685541	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	1524352	1524353	chr4:1524353:T:G	rs371390997	T	G	-	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	1524382	1524383	chr4:1524383:C:T	rs7671085	C	T	-	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr4	1524554	1524555	chr4:1524555:G:A	rs377403006	G	A	g	Sox1.mouse_HMG_3	11	1	+	9.527755069994408	5.41791463900851	TCACTGGCATTGT
chr4	1584840	1584841	chr4:1584841:G:T	rs11946466	G	T	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr4	2193452	2193453	chr4:2193453:C:T	rs33914019	C	T	T	Sox1.mouse_HMG_3	11	1	-	5.143721527512412	1.033881096526514	TAAATAACAGTGA
chr4	2263567	2263568	chr4:2263568:A:G	rs61789369	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.226090230180219	-1.6608192776202884	TCAGTTTCATTGC
chr4	2275911	2275912	chr4:2275912:A:G	rs4974667	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.631440427892477	-1.2207387142008093	TCCATTCCATTGC
chr4	2360928	2360929	chr4:2360929:T:C	rs3135125	T	C	C	Sox1.mouse_HMG_3	4	1	+	5.284133141238696	-1.6159628803759518	TCAATGACATTTT
chr4	2843546	2843547	chr4:2843547:C:T	rs35780153	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	2852617	2852618	chr4:2852618:C:G	rs112078927	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	2886713	2886714	chr4:2886714:A:G	rs3775068	A	G	G	Sox1.mouse_HMG_3	4	1	-	4.813669191757924	-2.0864268298567237	ACAATTTCACTGA
chr4	2929462	2929463	chr4:2929463:C:T	rs4968	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	3241210	3241211	chr4:3241211:G:T	rs144364475	G	T	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	4149885	4149886	chr4:4149886:A:G	rs143871354	A	G	-	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	4284990	4284991	chr4:4284991:T:A	rs3775340	T	A	T	Sox1.mouse_HMG_3	10	1	+	8.598083671731706	1.6979876501170585	TCACTGCCAGTGA
chr4	4303172	4303173	chr4:4303173:A:G	rs114864148	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	4694535	4694536	chr4:4694536:G:C	rs149993160	G	C	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr4	4931499	4931500	chr4:4931500:C:T	rs4303923	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	4931524	4931525	chr4:4931525:A:G	rs4404491	A	G	A	Sox1.mouse_HMG_3	5	1	-	5.118362612782004	1.3059580577648195	TCAATTTCCTTGC
chr4	4931531	4931532	chr4:4931532:C:G	rs4473604	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	4963661	4963662	chr4:4963662:T:C	rs7692360	T	C	t	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr4	5114519	5114520	chr4:5114520:A:G	rs12509816	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	5774315	5774316	chr4:5774316:C:A	rs17747499	C	A	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	5863530	5863531	chr4:5863531:C:A	rs76377619	C	A	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr4	5947353	5947354	chr4:5947354:C:G	rs9683432	C	G	C	Sox1.mouse_HMG_3	6	1	+	4.333599982402241	3.9086373856235563	TCAATGCCCTTGG
chr4	6097975	6097976	chr4:6097976:A:T	rs1877764	A	T	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr4	6097976	6097977	chr4:6097977:A:T	rs1877763	A	T	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	6326043	6326044	chr4:6326044:T:C	rs4689403	T	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	6600160	6600161	chr4:6600161:A:G	rs11929809	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	6688085	6688086	chr4:6688086:C:A	rs56077078	C	A	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	6688124	6688125	chr4:6688125:C:T	rs115737237	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr4	7004623	7004624	chr4:7004624:C:G	rs80057871	C	G	C	Sox1.mouse_HMG_3	7	1	+	4.66720558785719	-2.212530802607422	TAAATAGCAGTGA
chr4	7124237	7124238	chr4:7124238:A:G	rs11940640	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.989316592889178	-1.9194381864260417	ACACATGCATTGA
chr4	7183971	7183972	chr4:7183972:A:T	rs3936663	A	T	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	7382332	7382333	chr4:7382333:G:A	rs180772761	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.092168184635874	1.4597006935406818	TAAATACCAGTGA
chr4	7407660	7407661	chr4:7407661:C:T	rs4689115	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	7705070	7705071	chr4:7705071:T:C	rs6446613	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	7705077	7705078	chr4:7705078:G:A	rs6849439	G	A	G	Sox1.mouse_HMG_3	7	1	-	10.132694222788455	6.500226731693264	TTAATTACATTGA
chr4	7712484	7712485	chr4:7712485:G:A	rs4689832	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.228323102628504	1.595855611533311	TCAATTGCACTGC
chr4	7797579	7797580	chr4:7797580:A:G	rs11721583	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.524065576025992	-1.3628439317745165	ACAACATCATTGA
chr4	7797598	7797599	chr4:7797599:G:C	rs6829710	G	C	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	7841700	7841701	chr4:7841701:G:A	rs4689168	G	A	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	7849608	7849609	chr4:7849609:T:C	rs28418478	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	7858573	7858574	chr4:7858574:A:G	rs62289318	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	7949167	7949168	chr4:7949168:G:A	rs4385040	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	7949191	7949192	chr4:7949192:C:A	rs4345163	C	A	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr4	8090179	8090180	chr4:8090180:C:G	rs13119950	C	G	G	Sox1.mouse_HMG_3	11	1	-	5.603522036657203	1.0366933445376403	ACCATAGCATTGA
chr4	8147742	8147743	chr4:8147743:G:A	rs11734190	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	8235723	8235724	chr4:8235724:C:T	rs145892287	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr4	8377089	8377090	chr4:8377090:G:A	rs189323262	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr4	8377320	8377321	chr4:8377321:T:C	rs12499366	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.462074745104003	-1.446680034211219	TCACTTTCATGGA
chr4	8393791	8393792	chr4:8393792:T:C	rs556070047	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr4	8393795	8393796	chr4:8393796:C:G	rs912520267	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	8511216	8511217	chr4:8511217:T:C	rs17203215	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	8780056	8780057	chr4:8780057:C:T	rs144433760	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	8820962	8820963	chr4:8820963:C:T	rs148956907	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	9139431	9139432	chr4:9139432:G:T	rs148262539	G	T	N	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	9151731	9151732	chr4:9151732:T:A	rs35796658	T	A	N	Sox1.mouse_HMG_3	4	1	+	6.080037976312427	1.4448251805078127	ACAATAACTTTGA
chr4	9155699	9155700	chr4:9155700:G:C	rs939450074	G	C	N	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	9611286	9611287	chr4:9611287:C:A	rs13131004	C	A	c	Sox1.mouse_HMG_3	12	1	+	5.841945510864212	8.341163414682061	TCAATATCTTTGC
chr4	9690877	9690878	chr4:9690878:C:T	rs6814274	C	T	t	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	9914555	9914556	chr4:9914556:T:C	rs7674711	T	C	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	9930854	9930855	chr4:9930855:A:T	rs6449137	A	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr4	9930885	9930886	chr4:9930886:G:A	rs6837336	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr4	9965166	9965167	chr4:9965167:T:C	rs7663097	T	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr4	10112181	10112182	chr4:10112182:T:C	rs116615514	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.442977436716424	-2.4439320710840846	TCACAGCCATTGG
chr4	10163736	10163737	chr4:10163737:G:A	rs4697943	G	A	a	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	10204905	10204906	chr4:10204906:T:G	rs13135578	T	G	t	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	10333669	10333670	chr4:10333670:C:G	rs7688090	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	10722249	10722250	chr4:10722250:A:G	rs13137278	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	10929963	10929964	chr4:10929964:G:T	rs11935551	G	T	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr4	10965269	10965270	chr4:10965270:A:C	rs2869770	A	C	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	10998532	10998533	chr4:10998533:A:G	rs4697827	A	G	a	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr4	11074897	11074898	chr4:11074898:A:T	rs7688634	A	T	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr4	11471962	11471963	chr4:11471963:A:G	rs150033163	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.960926377874845	-1.939169643739803	TCACTGGCATTCT
chr4	11515099	11515100	chr4:11515100:A:G	rs9997161	A	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr4	11743626	11743627	chr4:11743627:A:G	rs1873714	A	G	A	Sox1.mouse_HMG_3	3	1	+	9.136193121317435	2.3351659594004306	ACAATATCATTGG
chr4	11889505	11889506	chr4:11889506:G:A	rs71605977	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr4	12245447	12245448	chr4:12245448:A:G	rs1479253	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.417727258608437	-0.21748553719617747	TCAATTGCTTTGG
chr4	12724695	12724696	chr4:12724696:A:G	rs1482195579	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.243480815695779	-2.656615205918869	TCAATACCATCTA
chr4	13059250	13059251	chr4:13059251:C:T	rs35754693	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	13401858	13401859	chr4:13401859:C:G	rs9999665	C	G	g	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	13459991	13459992	chr4:13459992:G:T	rs73231520	G	T	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	13988546	13988547	chr4:13988547:T:C	rs186086090	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr4	14000568	14000569	chr4:14000569:A:G	rs563591415	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	14000579	14000580	chr4:14000580:A:C	rs78741583	A	C	A	Sox1.mouse_HMG_3	8	1	+	8.349822172382634	1.4410673930674134	TCAACATCATTGA
chr4	14410873	14410874	chr4:14410874:A:G	rs17481850	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	14632016	14632017	chr4:14632017:C:T	rs73797427	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	14719064	14719065	chr4:14719065:G:C	rs73126818	G	C	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	14770427	14770428	chr4:14770428:T:C	rs73128642	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr4	14877571	14877572	chr4:14877572:C:T	rs6848585	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	14877585	14877586	chr4:14877586:C:T	rs41328848	C	T	C	Sox1.mouse_HMG_3	0	1	-	4.470712274696265	8.497134820432906	GCAATTACAGTGA
chr4	15131664	15131665	chr4:15131665:C:T	rs12512608	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	15131704	15131705	chr4:15131705:G:C	rs1455206	G	C	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr4	15229350	15229351	chr4:15229351:C:T	rs4432744	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr4	15260882	15260883	chr4:15260883:C:T	rs6845088	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr4	15306746	15306747	chr4:15306747:G:A	rs10516287	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	15316296	15316297	chr4:15316297:A:G	rs75346824	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr4	15326326	15326327	chr4:15326327:C:A	rs4698356	C	A	C	Sox1.mouse_HMG_3	7	1	+	6.078717945093276	0.788216759745245	TCAAACTCATTGA
chr4	15614275	15614276	chr4:15614276:T:G	rs4393989	T	G	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr4	15776840	15776841	chr4:15776841:T:C	rs112589006	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr4	15797583	15797584	chr4:15797584:C:T	rs6843266	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	15848706	15848707	chr4:15848707:T:G	rs1803404	T	G	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr4	15894717	15894718	chr4:15894718:C:T	rs727488	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	15933387	15933388	chr4:15933388:A:G	rs2531176	A	G	A	Sox1.mouse_HMG_3	10	1	-	6.303986979040932	1.668774183236318	ACACTGACATTGG
chr4	16005976	16005977	chr4:16005977:G:A	rs4466038	G	A	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr4	16031710	16031711	chr4:16031711:A:G	rs74469759	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.385153325278779	-2.5017561825217287	TCCATGACATTGG
chr4	16264607	16264608	chr4:16264608:T:G	rs77346097	T	G	t	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	16323367	16323368	chr4:16323368:A:G	rs4586928	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	16666419	16666420	chr4:16666420:G:A	rs6449262	G	A	g	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr4	16788291	16788292	chr4:16788292:C:T	rs17757703	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr4	16838978	16838979	chr4:16838979:C:T	rs62298185	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	17031591	17031592	chr4:17031592:C:G	chr4:17031592:C:G	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	17726988	17726989	chr4:17726989:T:C	rs546160769	T	C	t	Sox1.mouse_HMG_3	4	1	+	4.37846587727025	-2.5216301443443974	TCAATCACATGGA
chr4	18150382	18150383	chr4:18150383:C:A	rs76002472	C	A	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr4	18390859	18390860	chr4:18390860:C:T	rs184397701	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	18390893	18390894	chr4:18390894:T:A	rs6848900	T	A	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr4	18401531	18401532	chr4:18401532:G:A	rs137886495	G	A	g	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	18749640	18749641	chr4:18749641:A:G	rs1568229	A	G	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	19227818	19227819	chr4:19227819:G:T	rs191018322	G	T	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr4	19373942	19373943	chr4:19373943:C:T	rs34517311	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	20529357	20529358	chr4:20529358:G:A	rs2168801	G	A	G	Sox1.mouse_HMG_3	6	1	-	6.446802179677261	5.933724364566791	TAAATACCATTGT
chr4	20543457	20543458	chr4:20543458:T:A	rs649424	T	A	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	20543468	20543469	chr4:20543469:A:G	rs3775825	A	G	A	Sox1.mouse_HMG_3	4	1	-	6.415154331032102	-0.4849416905825441	TCAATTGTATTCA
chr4	20754383	20754384	chr4:20754384:G:A	rs2291530	G	A	G	Sox1.mouse_HMG_3	1	1	-	6.187765593710642	1.2294933625970155	ACAGTAACATTGA
chr4	21004503	21004504	chr4:21004504:C:T	rs558824958	C	T	C	Sox1.mouse_HMG_3	1	1	+	6.355023325974683	1.3967510948610573	TCCATACCATTGC
chr4	21544593	21544594	chr4:21544594:C:T	rs870368	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr4	21629484	21629485	chr4:21629485:T:C	rs10006027	T	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr4	21703215	21703216	chr4:21703216:T:C	rs73256527	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.623828088301742	-1.2849266910134778	TGAATAACATTGG
chr4	21845923	21845924	chr4:21845924:C:T	rs1398832	C	T	C	Sox1.mouse_HMG_3	1	1	+	7.479645622752193	2.521373391638567	TCAATAACAGTCA
chr4	21986590	21986591	chr4:21986591:G:T	rs997045426	G	T	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	22090815	22090816	chr4:22090816:G:A	rs34780697	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	22410841	22410842	chr4:22410842:C:T	rs562279947	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.380907459938081	0.4226352288244528	ACAATTACATTTA
chr4	22609474	22609475	chr4:22609475:T:C	rs6838110	T	C	c	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	22655705	22655706	chr4:22655706:G:A	rs77401428	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr4	22815039	22815040	chr4:22815040:A:G	rs1485822	A	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	23243173	23243174	chr4:23243174:T:G	chr4:23243174:T:G	T	G	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr4	23805437	23805438	chr4:23805438:T:G	rs28750249	T	G	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	23819700	23819701	chr4:23819701:T:C	rs60276093	T	C	T	Sox1.mouse_HMG_3	3	1	-	9.959506603795509	3.1584794418785047	TCAATTTCATTCA
chr4	24261650	24261651	chr4:24261651:G:A	rs76566700	G	A	G	Sox1.mouse_HMG_3	11	1	-	8.110696719711372	5.793223014223576	TCAATTACATTCT
chr4	24274572	24274573	chr4:24274573:C:G	rs116869778	C	G	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr4	24328953	24328954	chr4:24328954:G:A	rs61793465	G	A	g	Sox1.mouse_HMG_3	8	1	+	8.130658331710324	15.039413111025542	TCAATTCCGTTGA
chr4	24402432	24402433	chr4:24402433:G:A	rs59129277	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	24454038	24454039	chr4:24454039:G:A	rs13105131	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	24552546	24552547	chr4:24552547:G:A	rs58666069	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr4	24597454	24597455	chr4:24597455:G:A	rs1857898	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr4	24643553	24643554	chr4:24643554:G:A	rs367578551	G	A	g	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	24742820	24742821	chr4:24742821:T:C	rs16875994	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	24958124	24958125	chr4:24958125:T:A	rs7697533	T	A	T	Sox1.mouse_HMG_3	4	1	+	3.9172961433241293	-0.7179166524804852	TCAATGGCATAGG
chr4	25085656	25085657	chr4:25085657:G:A	rs60230854	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	25085667	25085668	chr4:25085668:G:T	rs74750019	G	T	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr4	25770350	25770351	chr4:25770351:C:T	rs6448402	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	25825379	25825380	chr4:25825380:C:T	rs540097809	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr4	25938024	25938025	chr4:25938025:T:A	rs143499469	T	A	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	25991750	25991751	chr4:25991751:C:A	rs6828245	C	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr4	26019111	26019112	chr4:26019112:T:A	rs13131797	T	A	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr4	26076110	26076111	chr4:26076111:C:A	rs77336503	C	A	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	26176532	26176533	chr4:26176533:T:G	rs6831164	T	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	26887029	26887030	chr4:26887030:G:A	rs80197589	G	A	G	Sox1.mouse_HMG_3	4	1	+	5.2127982322292805	7.477681458039314	TCAAGTTCATTGT
chr4	27896952	27896953	chr4:27896953:C:G	rs10939179	C	G	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr4	27982765	27982766	chr4:27982766:C:G	rs73260125	C	G	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr4	30716710	30716711	chr4:30716711:A:G	rs9291546	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	30803346	30803347	chr4:30803347:A:C	rs9654124	A	C	C	Sox1.mouse_HMG_3	2	1	+	9.382032627125579	2.473277847810359	TCAAAGTCATTGA
chr4	30954726	30954727	chr4:30954727:A:T	rs4499665	A	T	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr4	31588808	31588809	chr4:31588809:G:A	rs7656200	G	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	31667835	31667836	chr4:31667836:T:C	rs73814120	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.723219281595053	-1.163690226205454	TAAATTCCATTGT
chr4	31963879	31963880	chr4:31963880:C:T	rs1916298	C	T	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	32396984	32396985	chr4:32396985:G:A	rs1454310	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr4	32503146	32503147	chr4:32503147:T:C	rs7677345	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.88859789627557	-2.020156883039651	ACAACTGCATTGA
chr4	32508281	32508282	chr4:32508282:A:G	rs1584155	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	32543739	32543740	chr4:32543740:A:C	rs61794498	A	C	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr4	32991876	32991877	chr4:32991877:C:G	rs56338726	C	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	35105066	35105067	chr4:35105067:T:C	rs6831661	T	C	c	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	35122826	35122827	chr4:35122827:G:A	rs62293676	G	A	c	Sox1.mouse_HMG_3	7	1	-	6.345913227111568	2.7134457360163777	TCAATTACATCAA
chr4	35168345	35168346	chr4:35168346:A:C	rs13133684	A	C	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	35168370	35168371	chr4:35168371:A:G	rs114362182	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr4	35591337	35591338	chr4:35591338:A:G	rs73805979	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr4	35713998	35713999	chr4:35713999:G:C	rs58785712	G	C	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr4	37101018	37101019	chr4:37101019:C:T	rs7666915	C	T	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	37445251	37445252	chr4:37445252:C:T	rs76049455	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	37581653	37581654	chr4:37581654:C:T	rs6846773	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr4	37693338	37693339	chr4:37693339:A:G	rs1834346	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	37852630	37852631	chr4:37852631:G:A	rs73808089	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr4	37892918	37892919	chr4:37892919:T:C	rs6531594	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	37892956	37892957	chr4:37892957:T:A	rs13136603	T	A	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	37923594	37923595	chr4:37923595:T:C	rs4832743	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.445928084107305	-1.406251057985981	TTAATTCCATCGA
chr4	38091075	38091076	chr4:38091076:A:G	rs17607518	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	38156725	38156726	chr4:38156726:C:T	rs12503618	C	T	T	Sox1.mouse_HMG_3	11	1	-	4.045348315217321	-0.06449211576857738	TCATTTGCAGTGA
chr4	38165431	38165432	chr4:38165432:A:G	rs13139753	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.317504870968479	-1.534674271124805	TCACAGCCATTGT
chr4	38223313	38223314	chr4:38223314:G:A	rs10032945	G	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	38278645	38278646	chr4:38278646:G:A	rs4833028	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr4	38518916	38518917	chr4:38518917:C:A	rs17500093	C	A	C	Sox1.mouse_HMG_3	11	1	-	5.171306354409943	-1.7129960431974163	TCACTTCAATTGT
chr4	38605311	38605312	chr4:38605312:C:T	rs74669155	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr4	38677442	38677443	chr4:38677443:G:C	rs337615	G	C	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	38734102	38734103	chr4:38734103:A:G	rs111204003	A	G	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	39120395	39120396	chr4:39120396:A:G	rs7655122	A	G	A	Sox1.mouse_HMG_3	0	1	-	4.4141366374743285	-2.4380425046189553	TCTATTACAGTGA
chr4	39178796	39178797	chr4:39178797:T:G	rs1451821	T	G	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	39304883	39304884	chr4:39304884:C:G	rs2066792	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	39349105	39349106	chr4:39349106:T:C	rs193116138	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr4	40237775	40237776	chr4:40237776:C:T	rs10019892	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	40330820	40330821	chr4:40330821:T:A	rs10805117	T	A	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	40381541	40381542	chr4:40381542:G:C	rs59933647	G	C	g	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr4	40541897	40541898	chr4:40541898:T:C	rs11942105	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	40563839	40563840	chr4:40563840:C:G	rs142644598	C	G	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	40608616	40608617	chr4:40608617:A:T	rs6847630	A	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	40849031	40849032	chr4:40849032:T:C	rs4861068	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	40904614	40904615	chr4:40904615:G:A	rs60442914	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr4	40904632	40904633	chr4:40904633:G:A	rs79542621	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	40924026	40924027	chr4:40924027:C:T	rs756116586	C	T	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr4	40962470	40962471	chr4:40962471:T:C	rs62410355	T	C	T	Sox1.mouse_HMG_3	12	1	-	5.744548385410827	2.456579909087624	TTAATAGCATCGA
chr4	41208804	41208805	chr4:41208805:A:C	rs13127574	A	C	A	Sox1.mouse_HMG_3	12	1	+	4.287412537672969	1.7881946338551198	TCTATACCATTCA
chr4	41324766	41324767	chr4:41324767:G:T	rs1840101	G	T	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	41579271	41579272	chr4:41579272:C:T	rs10021226	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	42247803	42247804	chr4:42247804:T:A	rs7673565	T	A	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr4	42341794	42341795	chr4:42341795:G:A	rs56209012	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	42371564	42371565	chr4:42371565:A:C	rs2632709	A	C	A	Sox1.mouse_HMG_3	9	1	-	7.348658531820989	3.580583494708458	TCAATTATATTAA
chr4	42645446	42645447	chr4:42645447:G:C	rs2575454	G	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	42818936	42818937	chr4:42818937:T:C	rs6823271	T	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr4	43252112	43252113	chr4:43252113:A:G	rs1013813329	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr4	44928064	44928065	chr4:44928065:G:A	rs11723242	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	45101477	45101478	chr4:45101478:C:T	rs116171705	C	T	T	Sox1.mouse_HMG_3	11	1	-	5.2559097043058465	1.1460692733199482	TCAAATTCATCGA
chr4	45151292	45151293	chr4:45151293:C:T	rs10222856	C	T	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	46931996	46931997	chr4:46931997:T:G	rs12508654	T	G	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	46944939	46944940	chr4:46944940:T:C	rs62303698	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	47427388	47427389	chr4:47427389:A:C	rs76065978	A	C	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	48042985	48042986	chr4:48042986:A:G	rs5005127	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.711697726887515	0.8247882190870073	TGAATTGCATTGA
chr4	48175256	48175257	chr4:48175257:C:T	rs1466995	C	T	T	Sox1.mouse_HMG_3	8	1	-	4.894243198263659	11.802997977578878	TCAATTACGTTGG
chr4	48327713	48327714	chr4:48327714:C:T	rs6833004	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	49091726	49091727	chr4:49091727:G:C	rs111204118	G	C	.	Sox1.mouse_HMG_3	2	1	+	5.631440427892477	5.631440427892477	TCGATTCCATTGC
chr4	49092225	49092226	chr4:49092226:G:C	rs80190502	G	C	.	Sox1.mouse_HMG_3	2	1	+	5.631440427892477	5.631440427892477	TCGATTCCATTGC
chr4	49092864	49092865	chr4:49092865:C:T	rs867696266	C	T	.	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	49096469	49096470	chr4:49096470:A:T	rs62640274	A	T	.	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	49097343	49097344	chr4:49097344:T:C	rs11935583	T	C	.	Sox1.mouse_HMG_3	5	1	+	5.631440427892477	1.8190358728752911	TCCATTCCATTGC
chr4	49097640	49097641	chr4:49097641:T:C	rs28970763	T	C	.	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	49100302	49100303	chr4:49100303:G:A	rs199810394	G	A	.	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	49100309	49100310	chr4:49100310:T:C	rs111664683	T	C	.	Sox1.mouse_HMG_3	5	1	+	5.631440427892477	1.8190358728752911	TCCATTCCATTGC
chr4	49105166	49105167	chr4:49105167:T:G	chr4:49105167:T:G	T	G	.	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	49107402	49107403	chr4:49107403:G:C	rs62636156	G	C	.	Sox1.mouse_HMG_3	11	1	+	5.682993770769013	1.1161650786494497	TCCATTACATTGC
chr4	49107498	49107499	chr4:49107499:T:C	rs371794765	T	C	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr4	49109925	49109926	chr4:49109926:G:A	rs201743515	G	A	.	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr4	49112221	49112222	chr4:49112222:G:A	rs79729024	G	A	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	49112334	49112335	chr4:49112335:T:A	chr4:49112335:T:A	T	A	.	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr4	49119517	49119518	chr4:49119518:A:T	rs62653333	A	T	.	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr4	49119537	49119538	chr4:49119538:T:C	rs201474776	T	C	.	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr4	49120355	49120356	chr4:49120356:T:A	rs4126647	T	A	.	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	49149706	49149707	chr4:49149707:T:C	rs867663651	T	C	.	Sox1.mouse_HMG_3	9	1	+	5.631440427892477	-1.2554690799080321	TCCATTCCATTGC
chr4	49149713	49149714	chr4:49149714:C:G	rs865984589	C	G	.	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr4	49149719	49149720	chr4:49149720:C:A	chr4:49149720:C:A	C	A	.	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	49149889	49149890	chr4:49149890:T:A	rs79296124	T	A	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr4	49150608	49150609	chr4:49150609:C:G	rs62639883	C	G	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr4	49150864	49150865	chr4:49150865:A:T	chr4:49150865:A:T	A	T	.	Sox1.mouse_HMG_3	3	1	+	7.973366515088131	1.1723393531711266	TCAATTCCATTCC
chr4	49154378	49154379	chr4:49154379:A:T	rs200869788	A	T	.	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	49154379	49154380	chr4:49154380:A:G	rs201878143	A	G	.	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	49154927	49154928	chr4:49154928:T:A	rs111215656	T	A	.	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr4	49156165	49156166	chr4:49156166:T:G	rs150156719	T	G	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr4	49510956	49510957	chr4:49510957:A:G	rs6599465	A	G	.	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr4	49643635	49643636	chr4:49643636:G:T	rs796781857	G	T	.	Sox1.mouse_HMG_3	1	1	-	5.631440427892477	-1.2713123594668685	TCCATTCCATTGC
chr4	49643655	49643656	chr4:49643656:G:A	rs1014673433	G	A	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	49653631	49653632	chr4:49653632:A:G	rs911542805	A	G	.	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr4	49653635	49653636	chr4:49653636:A:C	rs202123559	A	C	.	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	49656395	49656396	chr4:49656396:A:G	rs56069993	A	G	.	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr4	49656408	49656409	chr4:49656409:C:A	rs377585738	C	A	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr4	49657313	49657314	chr4:49657314:G:A	rs111204710	G	A	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr4	52103214	52103215	chr4:52103215:G:A	rs11133347	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	52315191	52315192	chr4:52315192:A:G	rs17612939	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr4	52844218	52844219	chr4:52844219:A:C	rs7675322	A	C	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	52853143	52853144	chr4:52853144:T:C	rs7692692	T	C	C	Sox1.mouse_HMG_3	10	1	+	5.838889293661605	1.203676497856991	TCACTTTCATTAT
chr4	53161850	53161851	chr4:53161851:G:C	chr4:53161851:G:C	G	C	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	53682517	53682518	chr4:53682518:A:G	rs2668548	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.3296120402766505	-2.57914273903857	TCAATTTCTTTGG
chr4	53777605	53777606	chr4:53777606:A:G	rs2412499	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr4	53777621	53777622	chr4:53777622:T:C	rs28671441	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.228591856236568	-1.6801629230786523	TCAATTTCATTTT
chr4	53855472	53855473	chr4:53855473:A:G	rs17083607	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr4	54229231	54229232	chr4:54229232:A:G	rs1034941629	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	54278945	54278946	chr4:54278946:A:G	rs76850938	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	54371468	54371469	chr4:54371469:A:G	rs76274425	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	54385389	54385390	chr4:54385390:C:T	rs62297771	C	T	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	54403050	54403051	chr4:54403051:C:A	rs62297775	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	54544971	54544972	chr4:54544972:T:C	rs218269	T	C	C	Sox1.mouse_HMG_3	8	1	-	6.273772861517996	-0.6349819177972253	TCACTAGCATAGA
chr4	54620623	54620624	chr4:54620624:G:T	rs12512899	G	T	G	Sox1.mouse_HMG_3	4	1	+	4.617931497497697	11.518027519112342	TCAAGGTCATTGC
chr4	54620647	54620648	chr4:54620648:G:C	rs726080	G	C	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	55185126	55185127	chr4:55185127:C:T	rs144555188	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	55539980	55539981	chr4:55539981:C:T	rs111240180	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr4	55544620	55544621	chr4:55544621:T:C	rs7667741	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.8709638997148215	-0.9300632622021838	TCAATATGATTGC
chr4	55768755	55768756	chr4:55768756:G:A	rs73238325	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr4	55768761	55768762	chr4:55768762:C:T	rs73238326	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.311867091926922	1.2020266609410237	TCATTTTCATTGT
chr4	55850659	55850660	chr4:55850660:T:C	rs2012267	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr4	55905659	55905660	chr4:55905660:C:T	rs9968386	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	56259840	56259841	chr4:56259841:A:G	rs61000253	A	G	A	Sox1.mouse_HMG_3	9	1	-	10.461807539757974	3.5748980319574657	TCACTTCCATTGT
chr4	56691207	56691208	chr4:56691208:C:A	rs13141489	C	A	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr4	56872431	56872432	chr4:56872432:A:G	rs6858216	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	56872451	56872452	chr4:56872452:T:G	rs11730396	T	G	T	Sox1.mouse_HMG_3	10	1	+	6.4983555225537994	-0.40174049906084863	TAAATAACATTGT
chr4	57080855	57080856	chr4:57080856:C:T	rs11936912	C	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	57285775	57285776	chr4:57285776:A:G	rs57826843	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	57607958	57607959	chr4:57607959:T:C	rs112522775	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr4	57681779	57681780	chr4:57681780:C:T	rs6841855	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	57704994	57704995	chr4:57704995:C:A	rs35659385	C	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	58119379	58119380	chr4:58119380:T:C	rs72642173	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	59818865	59818866	chr4:59818866:A:C	rs547928785	A	C	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	59818866	59818867	chr4:59818867:G:C	rs570250486	G	C	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr4	59938462	59938463	chr4:59938463:A:T	rs72637562	A	T	T	Sox1.mouse_HMG_3	2	1	+	5.768339133249473	-1.1404156460657462	ACACTTTCAGTGA
chr4	60223119	60223120	chr4:60223120:A:G	rs76121733	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.6095240286130785	-1.1915031333039265	AGAATAGCATTGA
chr4	60225358	60225359	chr4:60225359:G:C	rs76655661	G	C	G	Sox1.mouse_HMG_3	3	1	+	4.717000357195339	9.353862989915918	TCAGTGTCATTGC
chr4	60225373	60225374	chr4:60225374:G:A	rs7675725	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	60682894	60682895	chr4:60682895:A:G	rs7687640	A	G	A	Sox1.mouse_HMG_3	6	1	+	8.927639844183783	8.45112390452856	TCAATAACAATGA
chr4	60809881	60809882	chr4:60809882:T:C	rs76679500	T	C	T	Sox1.mouse_HMG_3	12	1	-	5.29517235308859	2.0072038767653875	TCAATAATAATGA
chr4	61332704	61332705	chr4:61332705:T:C	rs1505678	T	C	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	61426478	61426479	chr4:61426479:T:C	rs7686044	T	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	61589743	61589744	chr4:61589744:T:C	rs17239080	T	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	62706303	62706304	chr4:62706304:T:G	rs72630526	T	G	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	63425243	63425244	chr4:63425244:C:G	rs112087401	C	G	c	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	63659743	63659744	chr4:63659744:A:G	rs17683007	A	G	A	Sox1.mouse_HMG_3	12	1	+	7.694967073116695	4.406998596793493	TCAATGACACTGA
chr4	63873692	63873693	chr4:63873693:T:C	rs984927947	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	64359588	64359589	chr4:64359589:C:T	rs17084731	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr4	64503862	64503863	chr4:64503863:C:G	rs11732760	C	G	G	Sox1.mouse_HMG_3	7	1	+	7.479645622752193	0.5999092322875827	TCAATAACAGTCA
chr4	64539250	64539251	chr4:64539251:C:G	rs7697908	C	G	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr4	65853329	65853330	chr4:65853330:C:T	rs17756441	C	T	C	Sox1.mouse_HMG_3	11	1	-	7.846556026373069	3.7367155953871705	ACACTATCATTGT
chr4	66001108	66001109	chr4:66001109:A:T	rs6823796	A	T	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	66597773	66597774	chr4:66597774:T:C	rs4032301	T	C	c	Sox1.mouse_HMG_3	5	1	-	5.075040209873572	3.8423674388064835	TCAATATCAATGG
chr4	66957144	66957145	chr4:66957145:C:T	rs74584673	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr4	67198721	67198722	chr4:67198722:T:C	rs10518025	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	67476007	67476008	chr4:67476008:C:T	rs35161455	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr4	67701729	67701730	chr4:67701730:C:A	rs375070176	C	A	C	Sox1.mouse_HMG_3	6	1	-	5.563376477249927	5.475261258918142	TCACTTGCACTGA
chr4	67961859	67961860	chr4:67961860:G:A	rs4260588	G	A	G	Sox1.mouse_HMG_3	1	1	-	12.116882195969517	7.158609964855891	TCAATGCCATTGT
chr4	67996243	67996244	chr4:67996244:C:T	rs1438407	C	T	c	Sox1.mouse_HMG_3	11	1	-	10.5753517135565	6.465511282570603	ACAATAACATTGT
chr4	68404750	68404751	chr4:68404751:C:A	rs141729907	C	A	c	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	68502546	68502547	chr4:68502547:C:T	rs35517288	C	T	c	Sox1.mouse_HMG_3	7	1	+	5.690375041611858	2.0579075505166653	ACAATTCCATTAT
chr4	68505583	68505584	chr4:68505584:A:T	rs28820893	A	T	a	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	68522727	68522728	chr4:68522728:A:C	rs34138969	A	C	a	Sox1.mouse_HMG_3	11	1	-	6.379475707682545	13.263778105289903	TCAATACCATTTC
chr4	68575795	68575796	chr4:68575796:C:T	rs28879970	C	T	c	Sox1.mouse_HMG_3	6	1	+	5.482663293352914	4.969585478242443	ACACTTCCATTCA
chr4	68748163	68748164	chr4:68748164:C:T	rs428529	C	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	68952098	68952099	chr4:68952099:G:C	rs2168842	G	C	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr4	69096382	69096383	chr4:69096383:G:A	rs73823859	G	A	.	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr4	69470865	69470866	chr4:69470866:G:A	rs2736519	G	A	g	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr4	69735473	69735474	chr4:69735474:A:C	rs1847365	A	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr4	69936499	69936500	chr4:69936500:T:C	rs962689	T	C	T	Sox1.mouse_HMG_3	2	1	-	7.62358250855573	0.7148277292405096	TAAATTTCATTGA
chr4	70089245	70089246	chr4:70089246:C:T	rs111865481	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	70241646	70241647	chr4:70241647:T:A	rs17148376	T	A	A	Sox1.mouse_HMG_3	0	1	+	6.9612019094944575	4.135445313137815	TCAATGTCAGTGG
chr4	70249335	70249336	chr4:70249336:T:A	rs3775740	T	A	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr4	70249342	70249343	chr4:70249343:G:A	rs3775739	G	A	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr4	70505072	70505073	chr4:70505073:C:T	rs28657705	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.482663293352914	1.8501958022577214	ACACTTCCATTCA
chr4	70541436	70541437	chr4:70541437:T:C	rs28408923	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	70838310	70838311	chr4:70838311:C:T	rs4694345	C	T	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	70838315	70838316	chr4:70838316:T:C	rs11729825	T	C	T	Sox1.mouse_HMG_3	0	1	+	7.626239274300426	0.7740601322071419	TCAATTTCATAGA
chr4	70885343	70885344	chr4:70885344:G:A	chr4:70885344:G:A	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	70957187	70957188	chr4:70957188:A:T	rs13137398	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr4	71029223	71029224	chr4:71029224:A:G	rs77592672	A	G	a	Sox1.mouse_HMG_3	9	1	-	9.20534873786617	2.3184392300656653	ACAATGCCATTGC
chr4	72110935	72110936	chr4:72110936:T:C	rs115976041	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	72809439	72809440	chr4:72809440:A:G	rs1114360	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr4	72952736	72952737	chr4:72952737:T:C	rs55897524	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr4	72992135	72992136	chr4:72992136:A:G	rs13135890	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	73091018	73091019	chr4:73091019:G:A	rs6855349	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	73421685	73421686	chr4:73421686:T:C	rs4429703	T	C	-	Sox1.mouse_HMG_3	3	1	-	4.842689855387123	-1.9583373065298841	TCTATTCCATTGG
chr4	73583914	73583915	chr4:73583915:T:C	rs59686740	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	73609791	73609792	chr4:73609792:C:T	rs62312138	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.890892437273827	1.2584249461786343	TCAGTGGCATTGT
chr4	73662060	73662061	chr4:73662061:T:G	rs1247684	T	G	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	74109703	74109704	chr4:74109704:T:A	rs77691638	T	A	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	74319043	74319044	chr4:74319044:A:G	rs16850918	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr4	74358872	74358873	chr4:74358873:T:C	rs1350666	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	74362753	74362754	chr4:74362754:T:C	rs3822102	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	74504521	74504522	chr4:74504522:A:G	rs3113928	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	74504558	74504559	chr4:74504559:A:T	rs3113929	A	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	74757157	74757158	chr4:74757158:C:T	rs9307117	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	74805858	74805859	chr4:74805859:C:T	rs187383016	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	75288012	75288013	chr4:75288013:C:T	rs7667892	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.232579798362158	1.6001123072669645	TCAATGCCATTTT
chr4	75468888	75468889	chr4:75468889:G:C	rs6825648	G	C	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	76051499	76051500	chr4:76051500:A:G	rs28433437	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	76053219	76053220	chr4:76053220:C:T	rs6532157	C	T	T	Sox1.mouse_HMG_3	11	1	-	4.419158931819727	0.30931850083382884	CCAATTCCAGTGA
chr4	76188725	76188726	chr4:76188726:A:C	rs17001603	A	C	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	76278057	76278058	chr4:76278058:A:C	rs3817118	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	76447039	76447040	chr4:76447040:C:T	rs17001966	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	76488641	76488642	chr4:76488642:G:A	rs7654754	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	76655821	76655822	chr4:76655822:C:T	rs11727631	C	T	T	Sox1.mouse_HMG_3	7	1	+	5.0568937144581945	1.4244262233630018	TCACTGGCATTTA
chr4	76664445	76664446	chr4:76664446:A:G	chr4:76664446:A:G	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr4	76736237	76736238	chr4:76736238:G:C	rs35930035	G	C	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	76927217	76927218	chr4:76927218:G:A	rs6824891	G	A	G	Sox1.mouse_HMG_3	5	1	-	4.340099048207852	8.152503603225037	TCAATCCCACTGA
chr4	76991709	76991710	chr4:76991710:G:A	rs904029	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	76991731	76991732	chr4:76991732:T:C	rs904030	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr4	77252185	77252186	chr4:77252186:G:T	chr4:77252186:G:T	G	T	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	77413727	77413728	chr4:77413728:C:T	rs6841674	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr4	77414630	77414631	chr4:77414631:G:A	rs35481793	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr4	77479484	77479485	chr4:77479485:T:A	rs75629616	T	A	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	77877493	77877494	chr4:77877494:T:C	rs4859511	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	78427128	78427129	chr4:78427129:G:C	rs1040768153	G	C	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr4	78479713	78479714	chr4:78479714:C:T	rs11098194	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	78509313	78509314	chr4:78509314:G:A	rs35520641	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	78509340	78509341	chr4:78509341:G:A	rs35150477	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr4	78615958	78615959	chr4:78615959:T:C	rs73828058	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.802155609947869	-1.1065991693673507	TTACTAGCATTGT
chr4	78627108	78627109	chr4:78627109:T:C	rs4254805	T	C	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr4	78786192	78786193	chr4:78786193:G:A	rs6838118	G	A	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	79445374	79445375	chr4:79445375:C:T	rs58146485	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr4	79497476	79497477	chr4:79497477:G:A	rs1971838	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.927722372610916	2.295254881515723	TCCATATCATTGT
chr4	79585990	79585991	chr4:79585991:C:A	rs116186422	C	A	C	Sox1.mouse_HMG_3	7	1	+	5.515406818325419	0.22490563297738775	ACCATATCATTGA
chr4	79622403	79622404	chr4:79622404:C:A	rs13133572	C	A	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	79688687	79688688	chr4:79688688:A:G	rs7699445	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr4	79851765	79851766	chr4:79851766:G:A	rs10021224	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr4	80078916	80078917	chr4:80078917:A:G	rs7693145	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	80198794	80198795	chr4:80198795:C:T	rs79975826	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr4	80286808	80286809	chr4:80286809:A:G	rs3733336	A	G	G	Sox1.mouse_HMG_3	9	1	-	4.4775347369678915	-2.4093747708326156	TCAGTCACATTGA
chr4	80464247	80464248	chr4:80464248:G:A	rs7693928	G	A	A	Sox1.mouse_HMG_3	11	1	+	5.469311789774183	1.3594713587882845	TTACTTACATTGC
chr4	81397869	81397870	chr4:81397870:A:C	rs7687154	A	C	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr4	81426038	81426039	chr4:81426039:A:T	rs6535248	A	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr4	81512194	81512195	chr4:81512195:A:T	rs895087	A	T	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr4	81666896	81666897	chr4:81666897:T:C	rs28594977	T	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	81875828	81875829	chr4:81875829:T:G	rs116515305	T	G	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr4	82184473	82184474	chr4:82184474:C:A	rs62319682	C	A	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr4	82230489	82230490	chr4:82230490:T:C	chr4:82230490:T:C	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr4	82631655	82631656	chr4:82631656:A:C	rs3857138	A	C	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	82652223	82652224	chr4:82652224:A:T	rs13135867	A	T	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr4	82793636	82793637	chr4:82793637:T:C	rs75245386	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.329799420676723	-1.5789553586384963	TCACTGTCATTAT
chr4	82892864	82892865	chr4:82892865:G:A	rs1020748	G	A	A	Sox1.mouse_HMG_3	6	1	-	5.092168184635874	4.579090369525403	TAAATACCAGTGA
chr4	83561506	83561507	chr4:83561507:A:G	rs62305329	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.53080254392027	0.8955897481156556	TCACTGACAATGA
chr4	83561513	83561514	chr4:83561514:G:A	rs144914748	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.53080254392027	0.893939911199688	TCACTGACAATGA
chr4	84145241	84145242	chr4:84145242:T:G	rs9992120	T	G	G	Sox1.mouse_HMG_3	5	1	+	7.58474739648109	7.07565752349621	TCACTTCAATTGA
chr4	84366231	84366232	chr4:84366232:G:A	rs72660885	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	84501674	84501675	chr4:84501675:C:T	rs570542618	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.314205448512006	0.3559332173983789	TCATTTGCATTGC
chr4	84532779	84532780	chr4:84532780:T:A	rs11734347	T	A	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	84686611	84686612	chr4:84686612:T:C	rs62303075	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.1825626554847055	-1.7043468523158019	TCAATGACATGGC
chr4	85114307	85114308	chr4:85114308:G:A	rs17009461	G	A	A	Sox1.mouse_HMG_3	7	1	-	5.127021370482577	1.4945538793873854	TCAACTTCATTGC
chr4	85422822	85422823	chr4:85422823:G:C	rs17010223	G	C	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	85794250	85794251	chr4:85794251:T:A	rs12503243	T	A	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	85833213	85833214	chr4:85833214:C:T	rs74363751	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.972495794469776	5.459417979359305	TGACTTCCATTGA
chr4	85956033	85956034	chr4:85956034:G:C	rs2665881	G	C	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	85994694	85994695	chr4:85994695:T:C	rs10003909	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.210141466484583	-1.6986133128306375	TGAATTTCATTGT
chr4	86044267	86044268	chr4:86044268:A:C	rs114925718	A	C	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr4	86453422	86453423	chr4:86453423:G:A	rs72663991	G	A	G	Sox1.mouse_HMG_3	1	1	-	6.649402984740789	1.6911307536271631	TCACTCCCATTGT
chr4	87615209	87615210	chr4:87615210:G:A	rs111205174	G	A	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	87657919	87657920	chr4:87657920:T:C	rs2615478	T	C	C	Sox1.mouse_HMG_3	2	1	-	5.894430578663734	-1.0143242006514877	TCACTGACATTAT
chr4	87811765	87811766	chr4:87811766:A:T	rs1054629	A	T	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr4	88064558	88064559	chr4:88064559:G:A	rs2725205	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr4	88172911	88172912	chr4:88172912:T:C	rs2622629	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	88190492	88190493	chr4:88190493:C:G	rs56328454	C	G	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	88706622	88706623	chr4:88706623:C:T	rs77860352	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	88706643	88706644	chr4:88706644:C:T	rs558007591	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	88818652	88818653	chr4:88818653:T:G	rs3775381	T	G	T	Sox1.mouse_HMG_3	10	1	+	8.649637014608244	1.7495409929935966	TCACTGACAGTGA
chr4	89109712	89109713	chr4:89109713:T:C	rs33998578	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.879939138574997	0.24472634277038252	ACAATTGCCTTGA
chr4	89258859	89258860	chr4:89258860:C:G	rs150202595	C	G	C	Sox1.mouse_HMG_3	1	1	+	3.9086373856235563	-2.9941154017357876	TCTATGGCATTGG
chr4	89266382	89266383	chr4:89266383:T:C	rs183612179	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.286026656807737	-0.6008828509927719	TCACTGATATTGC
chr4	89671543	89671544	chr4:89671544:A:C	rs6835887	A	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr4	90118631	90118632	chr4:90118632:C:T	rs7679917	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr4	90460006	90460007	chr4:90460007:C:A	rs62312946	C	A	c	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr4	90784426	90784427	chr4:90784427:A:G	rs7683460	A	G	G	Sox1.mouse_HMG_3	9	1	+	6.514198802112636	9.63303327280061	TCAATAACAATGT
chr4	91256297	91256298	chr4:91256298:G:A	rs57373593	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr4	92507183	92507184	chr4:92507184:T:C	rs7659159	T	C	C	Sox1.mouse_HMG_3	8	1	-	7.069496125193776	0.1607413458785567	TCAAAAACATTAA
chr4	93090159	93090160	chr4:93090160:A:G	rs4502650	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr4	93199328	93199329	chr4:93199329:A:C	rs6851719	A	C	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	93352679	93352680	chr4:93352680:T:A	rs1433659	T	A	T	Sox1.mouse_HMG_3	4	1	+	7.5460655617243635	2.9108527659197505	TCAATTTCATTCT
chr4	93834362	93834363	chr4:93834363:G:A	rs6835250	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	94208873	94208874	chr4:94208874:G:A	rs183993	G	A	A	Sox1.mouse_HMG_3	10	1	-	5.2832813520983155	9.918494147902928	TCACTGACATCGC
chr4	94537298	94537299	chr4:94537299:C:A	rs2510778	C	A	C	Sox1.mouse_HMG_3	11	1	-	5.313516928842889	-1.5707854687644702	TCACATTCATTGT
chr4	94648064	94648065	chr4:94648065:A:T	rs7656545	A	T	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	94714808	94714809	chr4:94714809:T:C	rs11934616	T	C	T	Sox1.mouse_HMG_3	0	1	+	11.19616731698819	4.343988174894903	TCAATACCATTCA
chr4	95017424	95017425	chr4:95017425:G:A	rs568440380	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	95017441	95017442	chr4:95017442:A:G	rs10018945	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	95028054	95028055	chr4:95028055:T:C	rs10516957	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	95184255	95184256	chr4:95184256:A:G	rs17415818	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.261797735378261	-1.6251117724222464	TCACTCTCATTGG
chr4	95262431	95262432	chr4:95262432:G:A	rs12649047	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	95287430	95287431	chr4:95287431:A:G	rs4699839	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	95382856	95382857	chr4:95382857:T:C	rs10461127	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr4	95454390	95454391	chr4:95454391:T:C	rs17023932	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr4	95537700	95537701	chr4:95537701:T:C	rs1385669	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.142814994489864	-1.744094513310642	TCAATTTCATTTC
chr4	95627406	95627407	chr4:95627407:A:C	rs6820560	A	C	A	Sox1.mouse_HMG_3	9	1	-	6.61388325530598	2.8458082181934468	ACACTGTCATTGT
chr4	95705798	95705799	chr4:95705799:G:A	rs72884057	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	96103405	96103406	chr4:96103406:A:G	chr4:96103406:A:G	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	96713583	96713584	chr4:96713584:G:A	rs72671960	G	A	G	Sox1.mouse_HMG_3	10	1	-	5.888585574875348	10.523798370679962	ACAATACCATCGT
chr4	97144311	97144312	chr4:97144312:T:G	rs6855655	T	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	98486147	98486148	chr4:98486148:G:A	rs12509267	G	A	A	Sox1.mouse_HMG_3	9	1	+	5.092168184635874	1.9733337139478995	TAAATACCAGTGA
chr4	98526835	98526836	chr4:98526836:G:A	rs17191936	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	98544290	98544291	chr4:98544291:A:T	rs6846101	A	T	A	Sox1.mouse_HMG_3	2	1	+	4.351457311791364	-2.5572974675238562	TCAATTTCACTGG
chr4	98555135	98555136	chr4:98555136:C:T	rs6831643	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr4	98611324	98611325	chr4:98611325:G:A	rs7700024	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	98995189	98995190	chr4:98995190:A:G	rs62323237	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	98996613	98996614	chr4:98996614:C:T	rs28550936	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.412629352751896	1.7801618616567032	ACAGTTCCATTGA
chr4	99722912	99722913	chr4:99722913:C:T	rs185711549	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr4	99733527	99733528	chr4:99733528:G:A	rs12642668	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr4	99945302	99945303	chr4:99945303:A:G	rs28375729	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr4	100034529	100034530	chr4:100034530:A:G	rs11936580	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr4	100076163	100076164	chr4:100076164:A:C	rs78648824	A	C	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr4	100291045	100291046	chr4:100291046:G:A	rs78908948	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.492880942676994	0.3830405116910951	TCATTGACATTGG
chr4	100389543	100389544	chr4:100389544:G:A	rs17030008	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	100421094	100421095	chr4:100421095:G:A	rs34038967	G	A	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	100516184	100516185	chr4:100516185:G:T	rs1501093	G	T	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	100604342	100604343	chr4:100604343:T:C	rs1015319546	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	100609303	100609304	chr4:100609304:C:T	rs111528787	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	100631719	100631720	chr4:100631720:G:A	rs4618316	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	100633391	100633392	chr4:100633392:G:A	rs4699810	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	101285818	101285819	chr4:101285819:C:T	rs72921877	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr4	101556921	101556922	chr4:101556922:G:A	rs76968463	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	101689754	101689755	chr4:101689755:G:A	rs7695700	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr4	101760113	101760114	chr4:101760114:C:T	rs4277781	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr4	101870747	101870748	chr4:101870748:C:G	rs10516483	C	G	G	Sox1.mouse_HMG_3	7	1	+	5.143721527512412	-1.736014862952199	TGAATAACAGTGA
chr4	102466398	102466399	chr4:102466399:A:G	rs1585216	A	G	A	Sox1.mouse_HMG_3	5	1	+	8.518924972681292	7.286252201614204	TCACTATCATTCA
chr4	102466415	102466416	chr4:102466416:C:G	rs77559485	C	G	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	102859764	102859765	chr4:102859765:C:T	rs223344	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr4	103092638	103092639	chr4:103092639:T:C	rs1054707	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.3382707979772235	-2.548638709823284	TCAACTTCATTGG
chr4	103498222	103498223	chr4:103498223:A:G	rs62340688	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.480226719904298	-2.406682787896209	ACACAGGCATTGA
chr4	103533703	103533704	chr4:103533704:C:T	rs420379	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	104780396	104780397	chr4:104780397:G:A	rs964967118	G	A	G	Sox1.mouse_HMG_3	6	1	-	4.247434434000194	3.734356618889724	CCACTACCATTGC
chr4	104780418	104780419	chr4:104780419:A:G	rs72664153	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr4	105150439	105150440	chr4:105150440:T:A	rs763480	T	A	A	Sox1.mouse_HMG_3	5	1	-	8.878952324641748	8.155369426559542	ACAATAACATTAA
chr4	105170788	105170789	chr4:105170789:T:C	rs17430146	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr4	105215938	105215939	chr4:105215939:G:C	rs140115170	G	C	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr4	105305536	105305537	chr4:105305537:G:A	rs1874758	G	A	A	Sox1.mouse_HMG_3	6	1	-	5.2317280092217775	4.718650194111307	TCACTGCCATCGC
chr4	105542506	105542507	chr4:105542507:C:T	rs17035711	C	T	C	Sox1.mouse_HMG_3	5	1	-	6.127035405123516	7.359708176190605	TCAAAGCCAGTGA
chr4	105606007	105606008	chr4:105606008:A:G	rs4324547	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr4	105623368	105623369	chr4:105623369:A:G	rs3796920	A	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr4	105642249	105642250	chr4:105642250:T:A	rs1447099	T	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	105754788	105754789	chr4:105754789:A:T	rs11731714	A	T	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	106212761	106212762	chr4:106212762:A:G	rs17036613	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	106899041	106899042	chr4:106899042:T:C	rs1454900254	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	107033865	107033866	chr4:107033866:G:C	rs139718739	G	C	.	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr4	107319219	107319220	chr4:107319220:A:G	rs17037600	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	107470226	107470227	chr4:107470227:A:G	rs1548487	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr4	107792751	107792752	chr4:107792752:G:A	rs75258371	G	A	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	107800974	107800975	chr4:107800975:A:C	rs79704888	A	C	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	108112417	108112418	chr4:108112418:T:G	rs533952869	T	G	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	108238064	108238065	chr4:108238065:G:A	rs80074112	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr4	108556951	108556952	chr4:108556952:C:G	rs11731416	C	G	G	Sox1.mouse_HMG_3	7	1	+	7.725308133998068	0.8455717435334569	TCATTTTCATTGA
chr4	108907122	108907123	chr4:108907123:T:G	rs11731391	T	G	T	Sox1.mouse_HMG_3	0	1	+	6.294132492668032	-0.558046649425253	TCACTAGGATTGA
chr4	109010850	109010851	chr4:109010851:C:T	rs1405161	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	109511693	109511694	chr4:109511694:A:G	rs11929713	A	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr4	110225051	110225052	chr4:110225052:C:T	rs4585374	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	110306436	110306437	chr4:110306437:G:C	rs10010721	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	110412333	110412334	chr4:110412334:A:G	rs60808768	A	G	A	Sox1.mouse_HMG_3	0	1	+	4.904391520282857	0.8779689745462158	ACAATTGCATTTA
chr4	110484475	110484476	chr4:110484476:G:C	rs60371652	G	C	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	110669087	110669088	chr4:110669088:C:T	rs2122076	C	T	C	Sox1.mouse_HMG_3	6	1	-	7.12509090707127	7.601606846726492	TCAATGGCATTCT
chr4	111294499	111294500	chr4:111294500:C:T	rs13125281	C	T	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	111323633	111323634	chr4:111323634:A:G	rs7684254	A	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	111850278	111850279	chr4:111850279:T:C	rs400245	T	C	T	Sox1.mouse_HMG_3	12	1	+	5.838889293661605	5.753112431914902	TCACTTTCATTAT
chr4	111986868	111986869	chr4:111986869:G:T	rs12644757	G	T	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr4	112181592	112181593	chr4:112181593:A:G	rs28599866	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr4	112332544	112332545	chr4:112332545:T:G	rs6820941	T	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr4	112973518	112973519	chr4:112973519:C:T	rs28535931	C	T	T	Sox1.mouse_HMG_3	1	1	+	5.314205448512006	0.3559332173983789	TCAGTTGCATTGC
chr4	112973525	112973526	chr4:112973526:A:G	rs11098182	A	G	G	Sox1.mouse_HMG_3	8	1	+	5.314205448512006	-1.5945493308032155	TCAGTTGCATTGC
chr4	113435006	113435007	chr4:113435007:G:A	rs9307390	G	A	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	113446156	113446157	chr4:113446157:C:T	rs78104782	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr4	113675878	113675879	chr4:113675879:G:A	rs74339210	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	113849121	113849122	chr4:113849122:C:T	rs79041353	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr4	113886654	113886655	chr4:113886655:G:A	rs6533724	G	A	G	Sox1.mouse_HMG_3	5	1	-	6.711733206765334	10.524137761782518	TCAATCACATTCA
chr4	113946530	113946531	chr4:113946531:G:A	rs28700902	G	A	-	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr4	114208658	114208659	chr4:114208659:T:C	rs1603617	T	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	114360337	114360338	chr4:114360338:T:C	rs28413684	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	114559654	114559655	chr4:114559655:C:T	rs112922949	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.1307791579229765	5.21655601966968	ACAAATACATTGC
chr4	114594012	114594013	chr4:114594013:T:C	rs62308098	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	114949874	114949875	chr4:114949875:C:T	rs998359	C	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	115055042	115055043	chr4:115055043:A:C	rs533585	A	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr4	115167889	115167890	chr4:115167890:T:C	rs9994109	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	115335157	115335158	chr4:115335158:T:A	rs35722339	T	A	T	Sox1.mouse_HMG_3	8	1	-	8.81696149371976	1.908206714404539	TCACTTACATTAA
chr4	115427924	115427925	chr4:115427925:A:G	rs6830739	A	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	115495492	115495493	chr4:115495493:T:A	rs6533921	T	A	A	Sox1.mouse_HMG_3	5	1	+	6.823286167002276	7.546869065084483	TCAAATATATTGA
chr4	115844549	115844550	chr4:115844550:T:C	rs1835502	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	116513410	116513411	chr4:116513411:T:C	rs12331649	T	C	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	116513448	116513449	chr4:116513449:T:G	rs12331652	T	G	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr4	116577190	116577191	chr4:116577191:T:A	rs71606781	T	A	t	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr4	116810093	116810094	chr4:116810094:G:A	rs10049964	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	116810115	116810116	chr4:116810116:C:T	rs2221208	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr4	116874786	116874787	chr4:116874787:G:A	rs72675454	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr4	117376774	117376775	chr4:117376775:G:C	rs12331566	G	C	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	117400078	117400079	chr4:117400079:T:C	rs17866921	T	C	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr4	118173309	118173310	chr4:118173310:C:T	rs11947071	C	T	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr4	118814185	118814186	chr4:118814186:T:C	rs114649974	T	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	118842361	118842362	chr4:118842362:G:A	rs59075024	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr4	118894946	118894947	chr4:118894947:A:G	rs62326783	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.972495794469776	-0.9144137133307315	TGACTTCCATTGA
chr4	119049434	119049435	chr4:119049435:C:T	rs17330327	C	T	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr4	119105709	119105710	chr4:119105710:A:G	rs76923152	A	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr4	119317918	119317919	chr4:119317919:A:G	rs10213267	A	G	a	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr4	119657384	119657385	chr4:119657385:A:G	rs7664440	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr4	120242963	120242964	chr4:120242964:G:A	rs9684604	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	120820100	120820101	chr4:120820101:A:G	rs343187	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	120850262	120850263	chr4:120850263:A:T	rs17051269	A	T	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	120853778	120853779	chr4:120853779:C:T	rs2597546	C	T	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr4	121063749	121063750	chr4:121063750:T:C	rs4311329	T	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	121141928	121141929	chr4:121141929:A:G	rs111424774	A	G	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	121141935	121141936	chr4:121141936:G:C	rs751000423	G	C	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	121157827	121157828	chr4:121157828:C:A	rs17051300	C	A	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	121177795	121177796	chr4:121177796:C:T	rs1470821	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	121340440	121340441	chr4:121340441:A:T	rs12651331	A	T	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr4	121674478	121674479	chr4:121674479:A:G	rs4240260	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr4	122131799	122131800	chr4:122131800:C:A	rs74360618	C	A	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	122456326	122456327	chr4:122456327:C:A	rs2069763	C	A	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr4	122603296	122603297	chr4:122603297:A:T	rs17005895	A	T	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr4	122663580	122663581	chr4:122663581:T:A	rs72911957	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.820264244076661	-2.088490535238558	ACAATGCCATTTA
chr4	122666960	122666961	chr4:122666961:A:G	rs11937293	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	122865676	122865677	chr4:122865677:A:G	rs308387	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr4	123093382	123093383	chr4:123093383:A:G	rs72678906	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.466062687229593	-1.4426920920856285	TCACTGCCATGGA
chr4	123421787	123421788	chr4:123421788:T:A	rs28477361	T	A	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr4	123486542	123486543	chr4:123486543:A:G	rs10012737	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr4	123607077	123607078	chr4:123607078:T:C	rs187766542	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	123673339	123673340	chr4:123673340:C:T	rs28720036	C	T	T	Sox1.mouse_HMG_3	7	1	+	4.4141366374743285	0.7816691463791356	TCAATTACGGTGA
chr4	123868441	123868442	chr4:123868442:A:G	rs116819571	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.643413730240157	0.8423865683231504	TCAATGCCACTGA
chr4	123980590	123980591	chr4:123980591:T:G	rs55922840	T	G	T	Sox1.mouse_HMG_3	9	1	+	5.8543620560051846	2.086287018892651	ACAAAAACATTGC
chr4	124045852	124045853	chr4:124045853:G:A	rs78514534	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr4	124060741	124060742	chr4:124060742:T:G	chr4:124060742:T:G	T	G	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr4	124459813	124459814	chr4:124459814:A:G	rs2390687	A	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr4	124854874	124854875	chr4:124854875:C:G	rs11944773	C	G	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	124936783	124936784	chr4:124936784:C:T	rs1532493	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr4	125125679	125125680	chr4:125125680:C:T	rs57273892	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	125322310	125322311	chr4:125322311:T:G	rs2663264	T	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	125535369	125535370	chr4:125535370:T:C	rs7660417	T	C	C	Sox1.mouse_HMG_3	10	1	+	5.29517235308859	0.6599595572839758	TCAATAATAATGA
chr4	125655208	125655209	chr4:125655209:T:C	rs13142551	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr4	125827053	125827054	chr4:125827054:A:C	rs77348922	A	C	A	Sox1.mouse_HMG_3	10	1	-	5.379835092993025	-1.520260928621623	TCAAAGACATTCA
chr4	125827064	125827065	chr4:125827065:A:T	rs11942958	A	T	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr4	125827074	125827075	chr4:125827075:T:C	rs9884548	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	125952023	125952024	chr4:125952024:T:A	rs965778	T	A	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr4	126702904	126702905	chr4:126702905:C:T	rs62324175	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	127058632	127058633	chr4:127058633:A:G	rs12498487	A	G	G	Sox1.mouse_HMG_3	8	1	+	7.411261519067143	0.5025067397519216	TCAAAAACAGTGA
chr4	127407801	127407802	chr4:127407802:G:A	chr4:127407802:G:A	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	127605366	127605367	chr4:127605367:C:A	rs60404814	C	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	127857249	127857250	chr4:127857250:T:C	rs143991735	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.178926192129531	-1.7079833156709772	CCAATGCCATTGC
chr4	128309410	128309411	chr4:128309411:C:T	rs117257723	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	128386561	128386562	chr4:128386562:A:G	rs7654743	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	128454311	128454312	chr4:128454312:A:G	rs147019347	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr4	128456935	128456936	chr4:128456936:C:T	rs2133464	C	T	T	Sox1.mouse_HMG_3	9	1	-	5.488827043630177	2.3699925729422024	ACAATGACAGTGC
chr4	128590291	128590292	chr4:128590292:A:G	rs1732091	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr4	128590294	128590295	chr4:128590295:C:G	rs1695416	C	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	128847630	128847631	chr4:128847631:C:T	rs114643397	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	129234432	129234433	chr4:129234433:A:G	rs6842443	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	129328312	129328313	chr4:129328313:C:A	rs4604071	C	A	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr4	129336708	129336709	chr4:129336709:A:T	rs6534726	A	T	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr4	129498839	129498840	chr4:129498840:A:C	rs599733	A	C	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	129623452	129623453	chr4:129623453:T:G	rs992693	T	G	G	Sox1.mouse_HMG_3	5	1	+	6.3467702273470525	5.837680354362172	TCAAATGTATTGA
chr4	129671701	129671702	chr4:129671702:G:T	rs17050588	G	T	T	Sox1.mouse_HMG_3	11	1	+	8.1366603236662	1.2523579260588407	TGAATTCCATTGA
chr4	129893155	129893156	chr4:129893156:A:G	rs72615876	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	129944158	129944159	chr4:129944159:G:A	rs186178905	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	130053822	130053823	chr4:130053823:A:C	rs11729475	A	C	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	130073773	130073774	chr4:130073774:A:G	rs2391581	A	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	130675596	130675597	chr4:130675597:T:C	rs10006622	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	131492986	131492987	chr4:131492987:G:A	rs351093	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	131548172	131548173	chr4:131548173:C:T	rs138718820	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	131779485	131779486	chr4:131779486:C:T	rs13435315	C	T	C	Sox1.mouse_HMG_3	6	1	-	4.879939138574997	5.356455078230219	ACTATTGCATTGA
chr4	132108947	132108948	chr4:132108948:G:C	rs75232366	G	C	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr4	132108948	132108949	chr4:132108949:T:A	rs10010474	T	A	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	132108958	132108959	chr4:132108959:G:A	rs541911541	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr4	132614864	132614865	chr4:132614865:G:A	rs1347414	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	132614877	132614878	chr4:132614878:T:C	rs11099195	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.801813854324676	-2.098282167289971	AAAATGCCATTGA
chr4	132642645	132642646	chr4:132642646:C:T	rs1025588	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	132716412	132716413	chr4:132716413:C:T	rs13117639	C	T	T	Sox1.mouse_HMG_3	7	1	+	6.024049137346314	2.3915816462511206	TAACTTACATTGA
chr4	132865768	132865769	chr4:132865769:A:G	rs6817623	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr4	133161811	133161812	chr4:133161812:T:C	rs4605668	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr4	133556725	133556726	chr4:133556726:G:T	rs1389332	G	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr4	133659311	133659312	chr4:133659312:A:G	rs2724287	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	134623246	134623247	chr4:134623247:T:C	rs11945519	T	C	t	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	134658107	134658108	chr4:134658108:G:A	rs28773473	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr4	134910143	134910144	chr4:134910144:G:C	rs79628092	G	C	g	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	135044992	135044993	chr4:135044993:A:G	rs4530692	A	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	135045007	135045008	chr4:135045008:G:A	rs4645267	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.259680759530836	0.30140852841720833	TCTATGACATTGT
chr4	136558713	136558714	chr4:136558714:A:G	rs9683947	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	136824428	136824429	chr4:136824429:C:G	rs2612113	C	G	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	136923845	136923846	chr4:136923846:A:T	rs17683139	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr4	137068643	137068644	chr4:137068644:C:G	rs4864383	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	137390340	137390341	chr4:137390341:A:C	rs756816120	A	C	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	137390340	137390341	chr4:137390341:A:T	chr4:137390341:A:T	A	T	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	137712932	137712933	chr4:137712933:G:A	rs74910795	G	A	A	Sox1.mouse_HMG_3	1	1	-	4.872811159543058	-0.08546107157056726	TCACTGTCATTCT
chr4	138114757	138114758	chr4:138114758:C:T	rs2313455	C	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	138192486	138192487	chr4:138192487:T:C	rs7687893	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	138460753	138460754	chr4:138460754:A:T	rs2976483	A	T	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr4	138488669	138488670	chr4:138488670:C:T	rs74618087	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	138490533	138490534	chr4:138490534:G:A	rs138430845	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.336847759102071	0.22700732811617286	TCACTAACATGGT
chr4	138907331	138907332	chr4:138907332:G:A	rs55764276	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	139025493	139025494	chr4:139025494:A:G	rs17050680	A	G	A	Sox1.mouse_HMG_3	9	1	-	12.526580875661088	5.639671367860581	TCAATAACATTGG
chr4	139461201	139461202	chr4:139461202:G:A	rs35097785	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	139561004	139561005	chr4:139561005:A:T	rs185360033	A	T	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	139629934	139629935	chr4:139629935:A:G	rs546825668	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	139761385	139761386	chr4:139761386:G:C	rs6536444	G	C	-	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr4	139761386	139761387	chr4:139761387:A:G	rs1543067	A	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr4	139808636	139808637	chr4:139808637:T:A	rs809478	T	A	T	Sox1.mouse_HMG_3	0	1	+	5.300112112906827	2.4743555165501845	TCACTGCCATTCC
chr4	139973217	139973218	chr4:139973218:G:A	rs1877077	G	A	a	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	140165179	140165180	chr4:140165180:C:A	chr4:140165180:C:A	C	A	c	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	140297888	140297889	chr4:140297889:C:T	rs56062225	C	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	140297906	140297907	chr4:140297907:C:T	rs191057455	C	T	C	Sox1.mouse_HMG_3	7	1	+	7.46028869997766	3.8278212088824675	TCAATTTCATTCC
chr4	140333213	140333214	chr4:140333214:C:T	rs1912963	C	T	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr4	140343302	140343303	chr4:140343303:G:A	rs72716320	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	140932285	140932286	chr4:140932286:A:G	rs7658326	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.482115024378237	-1.4266397549369838	ACACTGACATTAA
chr4	141142531	141142532	chr4:141142532:C:A	rs7661472	C	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	141154383	141154384	chr4:141154384:C:T	rs354934	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	141154399	141154400	chr4:141154400:G:A	rs4956350	G	A	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	141301632	141301633	chr4:141301633:T:G	rs10519590	T	G	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	141342498	141342499	chr4:141342499:A:G	rs55762117	A	G	A	Sox1.mouse_HMG_3	6	1	+	7.533222743041442	7.056706803386218	TCAAAGACATTGT
chr4	141540902	141540903	chr4:141540903:G:T	rs72615931	G	T	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	142042214	142042215	chr4:142042215:A:T	rs4260616	A	T	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	142125548	142125549	chr4:142125549:A:C	rs28373344	A	C	C	Sox1.mouse_HMG_3	0	1	-	9.946663785112587	3.094484643019303	TCAAAGACATTGA
chr4	142169898	142169899	chr4:142169899:G:C	rs173045	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr4	142866855	142866856	chr4:142866856:C:T	rs59762983	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	142971098	142971099	chr4:142971099:A:C	rs7692881	A	C	C	Sox1.mouse_HMG_3	8	1	+	5.388956240723397	-1.5197985385918231	ACAATCTCATTGC
chr4	143355563	143355564	chr4:143355564:G:A	rs300912	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.249037774088858	5.725553713744082	TCAGTAGCATTGG
chr4	143360851	143360852	chr4:143360852:A:G	rs17738628	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	143726892	143726893	chr4:143726893:T:G	rs1375989	T	G	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	143921255	143921256	chr4:143921256:G:A	rs532641836	G	A	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	144141117	144141118	chr4:144141118:T:C	rs36211745	T	C	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr4	144758185	144758186	chr4:144758186:A:G	rs2353929	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr4	144818795	144818796	chr4:144818796:T:C	rs553914738	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr4	144883559	144883560	chr4:144883560:C:T	rs7675454	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	145293818	145293819	chr4:145293819:A:G	rs2355239	A	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	145502362	145502363	chr4:145502363:T:G	rs2068991	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr4	145650987	145650988	chr4:145650988:G:A	rs11721510	G	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr4	145847921	145847922	chr4:145847922:G:A	rs1027841	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr4	145940425	145940426	chr4:145940426:C:G	rs62326219	C	G	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr4	145959298	145959299	chr4:145959299:C:G	rs968866708	C	G	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr4	146107812	146107813	chr4:146107813:T:C	rs4076765	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr4	146175090	146175091	chr4:146175091:C:T	rs72946685	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	146206660	146206661	chr4:146206661:T:G	rs6821066	T	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr4	147359848	147359849	chr4:147359849:C:G	rs4593108	C	G	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	147877773	147877774	chr4:147877774:T:G	rs17613979	T	G	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr4	147994592	147994593	chr4:147994593:A:G	rs17024245	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr4	148069124	148069125	chr4:148069125:C:T	rs115736594	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	148088823	148088824	chr4:148088824:C:A	rs6535578	C	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	148131698	148131699	chr4:148131699:T:A	rs11099678	T	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr4	148799966	148799967	chr4:148799967:T:C	rs12509344	T	C	C	Sox1.mouse_HMG_3	0	1	-	4.973573420368034	0.9471508746313915	ACACTGCCATTCA
chr4	148849880	148849881	chr4:148849881:C:T	rs862657	C	T	T	Sox1.mouse_HMG_3	11	1	-	7.039845131634518	2.93000470064862	TCACTATTATTGT
chr4	149303685	149303686	chr4:149303686:A:C	rs17624402	A	C	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	149311437	149311438	chr4:149311438:T:C	rs10019955	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.977241381222237	2.09033187342173	ACAATTACATTGG
chr4	149554245	149554246	chr4:149554246:A:G	rs2654802	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	149708887	149708888	chr4:149708888:T:C	rs978953670	T	C	T	Sox1.mouse_HMG_3	5	1	-	7.516755301670923	6.284082530603834	TTAATACCATTGG
chr4	150379504	150379505	chr4:150379505:G:A	rs13139265	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	150911459	150911460	chr4:150911460:T:C	rs77013479	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr4	150934174	150934175	chr4:150934175:G:A	rs76087649	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	151355590	151355591	chr4:151355591:A:C	rs4696081	A	C	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr4	151455565	151455566	chr4:151455566:C:T	rs60077220	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	151544348	151544349	chr4:151544349:C:T	rs4696094	C	T	C	Sox1.mouse_HMG_3	7	1	+	9.158726887593124	5.526259396497931	TCACTTACAGTGA
chr4	151544356	151544357	chr4:151544357:C:T	rs6858483	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr4	151574165	151574166	chr4:151574166:C:T	rs61653326	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	151668286	151668287	chr4:151668287:G:A	rs6816002	G	A	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	151716547	151716548	chr4:151716548:C:T	rs3792689	C	T	c	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr4	152179036	152179037	chr4:152179037:T:A	rs4588438	T	A	A	Sox1.mouse_HMG_3	2	1	-	5.1739038977841325	-1.7348508815310877	TCAATGACCTTGC
chr4	152264987	152264988	chr4:152264988:G:T	rs57285939	G	T	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr4	152708436	152708437	chr4:152708437:G:A	rs4604039	G	A	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	152708441	152708442	chr4:152708442:G:C	rs4591578	G	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	152735485	152735486	chr4:152735486:T:A	rs114613434	T	A	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	153197372	153197373	chr4:153197373:G:A	rs6822903	G	A	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	153434480	153434481	chr4:153434481:G:A	rs11099881	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	153610884	153610885	chr4:153610885:T:C	rs116245743	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr4	153610894	153610895	chr4:153610895:G:T	rs13135353	G	T	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	153725841	153725842	chr4:153725842:A:G	rs1530105	A	G	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr4	153905108	153905109	chr4:153905109:G:T	rs11942666	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr4	153906477	153906478	chr4:153906478:C:A	rs6831196	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr4	154029047	154029048	chr4:154029048:C:T	rs58229057	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	154029057	154029058	chr4:154029058:A:G	rs59388795	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.361668538285041	0.7264557424804274	TCACTGACAGTGG
chr4	154937166	154937167	chr4:154937167:G:T	rs10024613	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	156053544	156053545	chr4:156053545:G:A	rs6826026	G	A	A	Sox1.mouse_HMG_3	8	1	+	5.717217289639178	12.625972068954397	TCAATTCCGTTGT
chr4	156187137	156187138	chr4:156187138:A:G	rs13115068	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr4	156231294	156231295	chr4:156231295:C:T	rs2879725	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr4	156296005	156296006	chr4:156296006:G:A	rs12233878	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr4	156528609	156528610	chr4:156528610:G:A	rs1521704	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	156539796	156539797	chr4:156539797:C:T	rs77760010	C	T	C	Sox1.mouse_HMG_3	1	1	+	6.101883247827141	1.1436110167135125	ACAATAACACTGA
chr4	156580916	156580917	chr4:156580917:C:T	rs1521700	C	T	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr4	156619565	156619566	chr4:156619566:C:T	rs6832283	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	158169968	158169969	chr4:158169969:A:G	rs72695738	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr4	158633311	158633312	chr4:158633312:T:C	rs144210289	T	C	T	Sox1.mouse_HMG_3	0	1	-	8.416598165360817	4.390175619624177	ACAATGCCATTGG
chr4	158722992	158722993	chr4:158722993:C:T	rs114501848	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr4	158875158	158875159	chr4:158875159:C:G	rs13143943	C	G	C	Sox1.mouse_HMG_3	11	1	-	4.804470620069374	0.23764192794981076	ACAAGGCCATTGA
chr4	159139266	159139267	chr4:159139267:G:T	rs4691544	G	T	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	159178362	159178363	chr4:159178363:G:A	rs181531392	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	159240763	159240764	chr4:159240764:T:C	rs11931932	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.912043615249294	-1.9967111640659263	TCAAAAACAGTGC
chr4	159567207	159567208	chr4:159567208:A:G	rs6856295	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	159685202	159685203	chr4:159685203:C:T	rs34975017	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr4	160696734	160696735	chr4:160696735:C:T	rs79614048	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	161656661	161656662	chr4:161656662:A:G	rs78749316	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr4	161926803	161926804	chr4:161926804:T:C	rs13127083	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.31825377669314	-2.5686557311073677	TCCATCCCATTGA
chr4	162152914	162152915	chr4:162152915:A:C	rs77970302	A	C	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr4	162457624	162457625	chr4:162457625:T:C	rs11100445	T	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	162659293	162659294	chr4:162659294:C:T	chr4:162659294:C:T	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	162783212	162783213	chr4:162783213:C:T	rs111539596	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	163237706	163237707	chr4:163237707:C:T	rs11732470	C	T	T	Sox1.mouse_HMG_3	9	1	-	6.123047462997928	3.0042129923099523	TCAAATTCAGTGA
chr4	163333269	163333270	chr4:163333270:C:A	rs4518200	C	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	163607299	163607300	chr4:163607300:A:G	rs1511779	A	G	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	163610380	163610381	chr4:163610381:C:T	rs78361990	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	164309354	164309355	chr4:164309355:A:G	rs77507647	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr4	165215396	165215397	chr4:165215397:G:A	rs59189518	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr4	165258523	165258524	chr4:165258524:C:A	rs56058696	C	A	C	Sox1.mouse_HMG_3	11	1	-	5.362457070186094	-1.5218453274212655	AGAATTACATTGA
chr4	165599093	165599094	chr4:165599094:G:A	rs1996568	G	A	A	Sox1.mouse_HMG_3	1	1	-	4.916088469778373	-0.04218376133525359	TCAATTACAATGG
chr4	166012701	166012702	chr4:166012702:G:A	rs1393856	G	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr4	166386695	166386696	chr4:166386696:C:T	rs2611701	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr4	166657992	166657993	chr4:166657993:T:C	rs147617648	T	C	c	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	167455540	167455541	chr4:167455541:A:G	rs2252437	A	G	g	Sox1.mouse_HMG_3	5	1	+	7.878204920812509	6.645532149745421	TTAATATCATTGT
chr4	167688264	167688265	chr4:167688265:T:A	rs6834702	T	A	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr4	167714028	167714029	chr4:167714029:C:T	rs7656265	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr4	167766480	167766481	chr4:167766481:C:T	rs13118739	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr4	167848613	167848614	chr4:167848614:G:A	rs7696115	G	A	G	Sox1.mouse_HMG_3	7	1	-	4.847365205245339	1.214897714150146	ACAATGACGTTGA
chr4	167887549	167887550	chr4:167887550:G:C	rs113568422	G	C	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr4	168097738	168097739	chr4:168097739:C:T	rs150828827	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.933724364566791	2.301256873471598	TAAATATCATTGT
chr4	168242409	168242410	chr4:168242410:G:A	rs72693120	G	A	g	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	168453335	168453336	chr4:168453336:A:G	rs2634953	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.146802936615455	-1.7532930849991923	TCAATGCCATTTC
chr4	168506048	168506049	chr4:168506049:A:G	rs12647997	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.69738795812891	-2.103639203788097	TCAATGGCCTTGC
chr4	168664526	168664527	chr4:168664527:A:G	rs6839585	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr4	168668062	168668063	chr4:168668063:T:C	rs2723705	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.178514413292989	0.29160490549248075	ACACTGACATTGT
chr4	168731226	168731227	chr4:168731227:G:A	rs72699882	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr4	168756240	168756241	chr4:168756241:A:G	rs12510359	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr4	168923948	168923949	chr4:168923949:A:G	rs1305455010	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	169052313	169052314	chr4:169052314:C:T	rs17615499	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr4	169147564	169147565	chr4:169147565:C:T	rs76923798	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr4	169287017	169287018	chr4:169287018:T:C	rs13147779	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.841227650246687	-1.0675271290685329	TCACTTGCATTAC
chr4	169287022	169287023	chr4:169287023:G:A	rs371201362	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.841227650246687	1.204365017526107	TCACTTGCATTAC
chr4	169315080	169315081	chr4:169315081:G:A	rs185478652	G	A	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	169315110	169315111	chr4:169315111:C:T	rs182780195	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	169341880	169341881	chr4:169341881:T:G	rs4443239	T	G	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr4	170027176	170027177	chr4:170027177:C:T	rs67400066	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr4	170034216	170034217	chr4:170034217:G:T	rs11728005	G	T	G	Sox1.mouse_HMG_3	1	1	-	11.278561898884897	4.3758091115255535	TCAATCACATTGA
chr4	170066484	170066485	chr4:170066485:A:G	rs1480544	A	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr4	170527556	170527557	chr4:170527557:T:C	rs4692842	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr4	171289362	171289363	chr4:171289363:C:T	rs72981903	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	171641883	171641884	chr4:171641884:A:G	rs13151144	A	G	A	Sox1.mouse_HMG_3	5	1	-	5.310903727309556	1.4984991722923715	AGAATTCCATTGA
chr4	172147898	172147899	chr4:172147899:G:A	rs114325208	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	172147917	172147918	chr4:172147918:T:C	rs72700958	T	C	T	Sox1.mouse_HMG_3	12	1	+	7.966320139144294	7.8805432773975905	TTAATAGCATTGT
chr4	172147922	172147923	chr4:172147923:A:C	rs7665545	A	C	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr4	172401874	172401875	chr4:172401875:G:A	rs335997	G	A	A	Sox1.mouse_HMG_3	11	1	+	3.9082486989682113	-0.20159173201768654	CCACTAGCATTGT
chr4	172763545	172763546	chr4:172763546:A:G	rs6553658	A	G	G	Sox1.mouse_HMG_3	12	1	+	5.378300349744933	2.09033187342173	ACAATTACAATGA
chr4	173269070	173269071	chr4:173269071:G:A	rs13128039	G	A	G	Sox1.mouse_HMG_3	9	1	+	5.2454471529547515	2.126612682266776	TCAGTAACAGTGA
chr4	173660915	173660916	chr4:173660916:C:T	rs10005540	C	T	c	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr4	173685658	173685659	chr4:173685659:C:A	rs75002406	C	A	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	173972510	173972511	chr4:173972511:G:A	rs4075552	G	A	g	Sox1.mouse_HMG_3	7	1	-	4.955092822643554	1.322625331548361	ACATTGACATTGA
chr4	174009924	174009925	chr4:174009925:A:G	rs182194944	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	174018265	174018266	chr4:174018266:T:C	rs7674902	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr4	174128052	174128053	chr4:174128053:G:A	rs58655648	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr4	174141178	174141179	chr4:174141179:G:A	rs72700289	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	174153261	174153262	chr4:174153262:A:G	rs12510116	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr4	174155788	174155789	chr4:174155789:C:T	rs11733331	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr4	174198626	174198627	chr4:174198627:A:T	rs55997422	A	T	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	174496511	174496512	chr4:174496512:T:A	rs45444797	T	A	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	174538336	174538337	chr4:174538337:C:T	rs76365297	C	T	C	Sox1.mouse_HMG_3	5	1	-	5.1310093126081675	6.363682083675256	TCAAGGCCATTGC
chr4	174549588	174549589	chr4:174549589:G:A	rs75500625	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr4	174982829	174982830	chr4:174982830:A:T	rs111388415	A	T	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr4	175166243	175166244	chr4:175166244:A:T	rs162455	A	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr4	175451617	175451618	chr4:175451618:T:C	rs73013865	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr4	175951768	175951769	chr4:175951769:G:A	rs4690647	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr4	175964743	175964744	chr4:175964744:A:G	rs7656002	A	G	G	Sox1.mouse_HMG_3	8	1	+	5.768770632515716	-1.1399841467995049	TCCATTACATTGT
chr4	176055161	176055162	chr4:176055162:T:C	rs13102170	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	176121158	176121159	chr4:176121159:C:T	rs28695418	C	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	176335822	176335823	chr4:176335823:A:G	rs71613792	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr4	176377124	176377125	chr4:176377125:C:T	rs72708367	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr4	176593137	176593138	chr4:176593138:T:C	rs13125916	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	176921112	176921113	chr4:176921113:G:T	rs13152811	G	T	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	177229536	177229537	chr4:177229537:G:A	rs62342451	G	A	g	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr4	177367550	177367551	chr4:177367551:A:G	rs192033210	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr4	177370455	177370456	chr4:177370456:T:A	rs17064744	T	A	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr4	177809300	177809301	chr4:177809301:C:T	rs1020633	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	178039914	178039915	chr4:178039915:A:C	rs1023907	A	C	A	Sox1.mouse_HMG_3	10	1	-	4.328189001401499	-2.571907020213149	TCACTAACCTTGT
chr4	178224382	178224383	chr4:178224383:C:T	rs112266803	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr4	179109351	179109352	chr4:179109352:T:C	rs28868956	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	179334833	179334834	chr4:179334834:G:T	rs6841994	G	T	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	179415538	179415539	chr4:179415539:T:C	rs4861779	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	179703107	179703108	chr4:179703108:C:T	rs73000086	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr4	179752669	179752670	chr4:179752670:C:T	rs11736914	C	T	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr4	180160088	180160089	chr4:180160089:A:G	rs10012121	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.706046715829483	-2.202708063485738	TCAATGGCATAGC
chr4	180409211	180409212	chr4:180409212:A:G	rs4624698	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr4	181019430	181019431	chr4:181019431:A:G	rs35055758	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	181204434	181204435	chr4:181204435:C:G	chr4:181204435:C:G	C	G	.	Sox1.mouse_HMG_3	11	1	-	3.901949937615027	-0.6648787545045365	TCAATCGCATAGA
chr4	181361775	181361776	chr4:181361776:G:A	rs17071183	G	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr4	181996842	181996843	chr4:181996843:G:T	chr4:181996843:G:T	G	T	G	Sox1.mouse_HMG_3	7	1	-	6.746652337818043	1.4561511524700121	CCACTACCATTGA
chr4	182145710	182145711	chr4:182145711:G:T	rs145715672	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	182276208	182276209	chr4:182276209:A:G	rs144345989	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	182327606	182327607	chr4:182327607:T:A	rs6845253	T	A	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr4	182538230	182538231	chr4:182538231:T:G	rs4862075	T	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr4	182748890	182748891	chr4:182748891:A:G	rs11132149	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr4	182890892	182890893	chr4:182890893:C:T	rs1130902	C	T	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr4	183146578	183146579	chr4:183146579:C:G	rs188802277	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr4	183263985	183263986	chr4:183263986:C:G	rs150185381	C	G	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr4	183420141	183420142	chr4:183420142:T:C	rs4241766	T	C	t	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr4	183637738	183637739	chr4:183637739:T:C	rs147294550	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	183799316	183799317	chr4:183799317:G:A	rs4862253	G	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr4	183958882	183958883	chr4:183958883:C:T	rs17363675	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr4	184017935	184017936	chr4:184017936:A:G	rs1970894	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.294768989699401	0.6595561938947874	TCACTCCCAGTGA
chr4	184121125	184121126	chr4:184121126:T:A	rs4861600	T	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr4	184299161	184299162	chr4:184299162:G:C	rs7672338	G	C	g	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr4	184331865	184331866	chr4:184331866:C:T	rs793900	C	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr4	184474821	184474822	chr4:184474822:C:T	rs984290945	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	184479593	184479594	chr4:184479594:G:A	rs7658103	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr4	184535029	184535030	chr4:184535030:G:T	rs13130427	G	T	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr4	184767599	184767600	chr4:184767600:C:T	rs4862415	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.219028433987917	-0.7392437971257084	TCAAAACCTTTGA
chr4	184796954	184796955	chr4:184796955:T:C	rs59612892	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr4	184827039	184827040	chr4:184827040:A:G	rs9686055	A	G	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr4	184827056	184827057	chr4:184827057:C:T	rs540952314	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr4	184888024	184888025	chr4:184888025:T:C	rs28668799	T	C	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr4	184969330	184969331	chr4:184969331:C:T	rs6817563	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr4	184969364	184969365	chr4:184969365:A:G	rs6817430	A	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr4	185007349	185007350	chr4:185007350:A:G	rs10033727	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.340099048207852	-0.29511374759676223	TCAATCCCACTGA
chr4	185007351	185007352	chr4:185007352:T:A	rs11733508	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.340099048207852	-2.5686557311073686	TCAATCCCACTGA
chr4	185026639	185026640	chr4:185026640:A:G	rs146767167	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.343988174894903	-2.5647666044203166	GCAATACCATTCA
chr4	185306377	185306378	chr4:185306378:T:G	rs753359	T	G	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr4	185467188	185467189	chr4:185467189:T:C	rs7677639	T	C	t	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr4	185929049	185929050	chr4:185929050:C:T	rs10013071	C	T	t	Sox1.mouse_HMG_3	11	1	-	5.38181143738168	1.2719710063957823	TCACTATAATTGT
chr4	186012905	186012906	chr4:186012906:C:T	rs75747770	C	T	c	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr4	186051129	186051130	chr4:186051130:T:C	rs7686069	T	C	C	Sox1.mouse_HMG_3	2	1	-	4.987666755973212	-1.9210880233420098	ACATTTGCATTGA
chr4	186145485	186145486	chr4:186145486:A:T	rs876332	A	T	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr4	186145517	186145518	chr4:186145518:T:G	rs139470415	T	G	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr4	186204013	186204014	chr4:186204014:T:A	rs13106826	T	A	T	Sox1.mouse_HMG_3	8	1	-	7.936633883885857	1.0278791045706388	TCAATAACAGTAA
chr4	186266997	186266998	chr4:186266998:A:C	rs3822057	A	C	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr4	186584849	186584850	chr4:186584850:T:C	rs147300423	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr4	186829983	186829984	chr4:186829984:C:T	rs1583218	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	186861259	186861260	chr4:186861260:T:C	rs73873906	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.024049137346314	-0.8628603704541944	TGACTTACATTGA
chr4	186875867	186875868	chr4:186875868:A:C	rs172818	A	C	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr4	187151866	187151867	chr4:187151867:T:C	rs6816104	T	C	T	Sox1.mouse_HMG_3	12	1	-	6.233574522707572	2.9456060463843703	CCACTATCATTGA
chr4	187151873	187151874	chr4:187151874:T:C	rs1532020	T	C	T	Sox1.mouse_HMG_3	5	1	-	6.233574522707572	5.000901751640484	CCACTATCATTGA
chr4	187437615	187437616	chr4:187437616:T:C	rs7688340	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr4	188041708	188041709	chr4:188041709:T:C	rs997847706	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.663234452568785	-0.24552032674643343	ACACTACCATTAA
chr4	188429108	188429109	chr4:188429109:T:C	rs62351650	T	C	t	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	188480686	188480687	chr4:188480687:G:C	rs74354955	G	C	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr4	188812767	188812768	chr4:188812768:T:C	rs62341250	T	C	t	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr4	188818214	188818215	chr4:188818215:A:T	rs10004240	A	T	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr4	188949913	188949914	chr4:188949914:G:A	rs11946546	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr4	188994048	188994049	chr4:188994049:A:T	rs72723431	A	T	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr4	189203662	189203663	chr4:189203663:T:G	rs73875905	T	G	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr4	189203668	189203669	chr4:189203669:G:A	rs7678384	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr4	189203699	189203700	chr4:189203700:G:A	rs7678403	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr4	189215921	189215922	chr4:189215922:A:C	rs6833202	A	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr4	189255792	189255793	chr4:189255793:G:T	rs7660355	G	T	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr4	189341048	189341049	chr4:189341049:C:T	rs34649146	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr4	189375780	189375781	chr4:189375781:T:C	rs114036516	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr4	189552233	189552234	chr4:189552234:G:C	rs4863194	G	C	G	Sox1.mouse_HMG_3	7	1	-	6.690076700596107	-0.18965968986850412	TCACTACCCTTGA
chr5	308236	308237	chr5:308237:T:C	rs56075848	T	C	C	Sox1.mouse_HMG_3	12	1	-	5.041100090450907	1.7531316141277045	TCACTGGCATGGA
chr5	438693	438694	chr5:438694:C:T	rs72717425	C	T	t	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	442559	442560	chr5:442560:C:T	rs139173233	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	834745	834746	chr5:834746:C:T	rs11960529	C	T	c	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	840183	840184	chr5:840184:G:T	rs3822814	G	T	g	Sox1.mouse_HMG_3	11	1	+	5.717217289639178	-1.1670851079681808	TCCATTCCATTGT
chr5	946302	946303	chr5:946303:A:C	rs16903665	A	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	1442726	1442727	chr5:1442727:C:T	rs13189021	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	1519533	1519534	chr5:1519534:T:C	rs73033833	T	C	T	Sox1.mouse_HMG_3	4	1	-	4.746819831320964	2.481936605510932	TCAAAGTCATCGA
chr5	1643696	1643697	chr5:1643697:A:G	rs10475077	A	G	A	Sox1.mouse_HMG_3	0	1	+	6.2370874304552935	2.2106648847186507	ACACTCCCATTGA
chr5	1696816	1696817	chr5:1696817:C:T	rs6889740	C	T	C	Sox1.mouse_HMG_3	7	1	+	7.158609964855891	3.526142473760699	TTAATGCCATTGT
chr5	1696838	1696839	chr5:1696839:T:C	rs12520553	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	1726322	1726323	chr5:1726323:A:G	rs111503523	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr5	1794806	1794807	chr5:1794807:T:C	rs4975846	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	1794810	1794811	chr5:1794811:C:T	rs546960284	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr5	1794830	1794831	chr5:1794831:C:T	rs565352209	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	2078528	2078529	chr5:2078529:G:A	rs72708664	G	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr5	2129118	2129119	chr5:2129119:G:A	rs4077288	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	2129145	2129146	chr5:2129146:C:T	rs150379173	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr5	2388740	2388741	chr5:2388741:A:G	rs465787	A	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr5	2606978	2606979	chr5:2606979:C:T	rs28582547	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	2629280	2629281	chr5:2629281:G:A	rs1444825472	G	A	G	Sox1.mouse_HMG_3	6	1	+	6.9065759422022595	7.383091881857483	TCACTAGCAGTGC
chr5	2723951	2723952	chr5:2723952:C:T	rs114846434	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr5	2851741	2851742	chr5:2851742:G:A	rs559379	G	A	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	3009080	3009081	chr5:3009081:C:T	rs2961796	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	3091621	3091622	chr5:3091622:C:T	rs73039149	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.944326114418548	1.3118586233233553	TCACTGTCCTTGA
chr5	3154051	3154052	chr5:3154052:C:A	rs1144847	C	A	C	Sox1.mouse_HMG_3	7	1	+	6.846630361080134	1.5561291757321036	TCAAAATCAGTGA
chr5	3276887	3276888	chr5:3276888:T:C	rs34035132	T	C	t	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr5	3276890	3276891	chr5:3276891:C:G	rs34800353	C	G	c	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr5	3276893	3276894	chr5:3276894:C:T	rs78317438	C	T	c	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	3372574	3372575	chr5:3372575:G:T	rs62337538	G	T	T	Sox1.mouse_HMG_3	7	1	-	7.629997061740825	2.339495876392795	ACAAATACATTGA
chr5	3485471	3485472	chr5:3485472:T:G	rs17685711	T	G	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr5	3604563	3604564	chr5:3604564:C:A	rs6867483	C	A	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	3613753	3613754	chr5:3613754:T:A	rs13166650	T	A	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	3644809	3644810	chr5:3644810:A:T	rs12654661	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	3750535	3750536	chr5:3750536:A:G	rs9790954	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	4002120	4002121	chr5:4002121:C:T	rs2398651	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	4002135	4002136	chr5:4002136:A:C	rs4449537	A	C	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr5	4050761	4050762	chr5:4050762:T:C	rs4701743	T	C	C	Sox1.mouse_HMG_3	9	1	+	5.379835092993025	-1.5070744148074833	TCAAAGACATTCA
chr5	4533386	4533387	chr5:4533387:G:T	rs7733851	G	T	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr5	4784543	4784544	chr5:4784544:A:G	rs1173229	A	G	G	Sox1.mouse_HMG_3	2	1	+	6.721499814697266	-0.18725496461795554	ACAATAACAGTGC
chr5	5242569	5242570	chr5:5242570:T:C	rs17713759	T	C	.	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr5	5546604	5546605	chr5:5546605:C:T	rs569665402	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	6038067	6038068	chr5:6038068:T:C	rs1021416	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	6038099	6038100	chr5:6038100:A:G	rs35128	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	6358710	6358711	chr5:6358711:C:A	rs553273946	C	A	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	6576206	6576207	chr5:6576207:A:G	rs10058390	A	G	A	Sox1.mouse_HMG_3	12	1	+	4.3712420522983635	1.0832735759751615	TCAAGTCCAGTGA
chr5	6673422	6673423	chr5:6673423:C:T	rs28434783	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	6702501	6702502	chr5:6702502:C:G	rs61616385	C	G	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr5	6841893	6841894	chr5:6841894:G:A	rs10053085	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	7256777	7256778	chr5:7256778:T:C	rs77527717	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr5	7515568	7515569	chr5:7515569:A:G	rs17826546	A	G	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr5	7629642	7629643	chr5:7629643:C:T	rs2914290	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr5	7749751	7749752	chr5:7749752:A:G	rs7447235	A	G	G	Sox1.mouse_HMG_3	2	1	+	4.669862353601886	-2.2388924257133334	TCAATAGCAGAGA
chr5	7779933	7779934	chr5:7779934:C:T	rs74488857	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	7828419	7828420	chr5:7828420:C:A	rs326173	C	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr5	7828453	7828454	chr5:7828454:C:A	rs326174	C	A	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	7828465	7828466	chr5:7828466:G:T	rs929787	G	T	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr5	8291116	8291117	chr5:8291117:C:T	rs6887466	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	8366559	8366560	chr5:8366560:C:G	rs73049313	C	G	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	8832548	8832549	chr5:8832549:C:T	chr5:8832549:C:T	C	T	C	Sox1.mouse_HMG_3	11	1	+	5.3995352966965715	3.082061591208775	TCACTACTATTCA
chr5	8893266	8893267	chr5:8893267:C:G	rs12522763	C	G	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	8893365	8893366	chr5:8893366:A:G	rs2963330	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	8974419	8974420	chr5:8974420:T:C	rs1947586	T	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	9423721	9423722	chr5:9423722:G:T	rs17258120	G	T	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	10040655	10040656	chr5:10040656:C:T	rs314740	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.409605706986639	0.7771382158914464	TCAATGACATTTG
chr5	10050360	10050361	chr5:10050361:A:C	rs138901222	A	C	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	10124413	10124414	chr5:10124414:G:T	rs2658099	G	T	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	10336063	10336064	chr5:10336064:G:A	rs75783352	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	10548503	10548504	chr5:10548504:A:T	rs12515831	A	T	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	10555464	10555465	chr5:10555465:T:A	rs75244661	T	A	T	Sox1.mouse_HMG_3	10	1	+	5.2277757306532155	-1.6723202909614323	TAAATACTATTGA
chr5	10719691	10719692	chr5:10719692:T:C	rs267978	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr5	11518907	11518908	chr5:11518908:A:G	rs191877964	A	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	11996554	11996555	chr5:11996555:T:C	rs11738825	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	12013754	12013755	chr5:12013755:C:T	rs74860806	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	12193302	12193303	chr5:12193303:G:A	rs2968091	G	A	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	12896644	12896645	chr5:12896645:T:C	rs944535954	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	13023122	13023123	chr5:13023123:C:T	rs35700763	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.9569696785604	5.443891863449929	ACAATACCATTCT
chr5	13375356	13375357	chr5:13375357:C:T	rs181256271	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr5	13435965	13435966	chr5:13435966:T:C	rs9312827	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr5	14013086	14013087	chr5:14013087:G:A	rs4701593	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	14054619	14054620	chr5:14054620:A:G	rs57287421	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	14098275	14098276	chr5:14098276:C:T	rs75280766	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	14220364	14220365	chr5:14220365:A:G	rs164858	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr5	14220412	14220413	chr5:14220413:T:G	rs72744206	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr5	14343542	14343543	chr5:14343543:A:C	rs62344979	A	C	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	14414943	14414944	chr5:14414944:C:G	rs30611	C	G	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	14498617	14498618	chr5:14498618:G:A	rs26107	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	14767062	14767063	chr5:14767063:G:T	rs2062537	G	T	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	15173097	15173098	chr5:15173098:A:G	rs921041	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	15258168	15258169	chr5:15258169:T:C	rs11746880	T	C	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	15576646	15576647	chr5:15576647:T:C	rs9312894	T	C	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr5	15687606	15687607	chr5:15687607:G:A	rs16867548	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	15752894	15752895	chr5:15752895:A:G	rs111366337	A	G	A	Sox1.mouse_HMG_3	5	1	+	10.67231262272971	9.439639851662621	TCACTATCATTGT
chr5	15933459	15933460	chr5:15933460:A:G	rs62348110	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	16141886	16141887	chr5:16141887:A:G	rs344702	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr5	16453723	16453724	chr5:16453724:T:A	rs26377	T	A	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	16547584	16547585	chr5:16547585:G:A	rs75163716	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr5	16568961	16568962	chr5:16568962:G:T	rs17613128	G	T	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	16589740	16589741	chr5:16589741:T:C	rs2451851	T	C	c	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	16612375	16612376	chr5:16612376:C:G	rs2249506	C	G	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	16871113	16871114	chr5:16871114:G:T	rs253315	G	T	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	16881238	16881239	chr5:16881239:C:G	rs4702179	C	G	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr5	16884917	16884918	chr5:16884918:G:C	rs114639400	G	C	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	16884918	16884919	chr5:16884919:G:A	rs10069811	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	17000599	17000600	chr5:17000600:A:G	rs954604	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.201264356121522	1.3143548483210137	TCAAAATCATTGT
chr5	17309687	17309688	chr5:17309688:T:C	rs298514	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.001970815661874	-1.9067839636533461	TCATTTACATTGG
chr5	17428516	17428517	chr5:17428517:C:T	rs142001602	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr5	17721460	17721461	chr5:17721461:C:T	rs6868150	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	17793187	17793188	chr5:17793188:G:A	rs9292838	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	18069124	18069125	chr5:18069125:A:G	rs633230	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	18069135	18069136	chr5:18069136:T:C	rs633217	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr5	19173233	19173234	chr5:19173234:T:C	rs4574545	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.615274731753001	-0.019938064051613802	TAAATGTCATTGC
chr5	19258908	19258909	chr5:19258909:G:A	rs74632738	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	19407735	19407736	chr5:19407736:T:A	rs62351793	T	A	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr5	19758885	19758886	chr5:19758886:T:G	rs4276412	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	19950985	19950986	chr5:19950986:A:G	rs2089556	A	G	G	Sox1.mouse_HMG_3	9	1	-	12.366158708844239	5.479249201043732	TCACTGCCATTGA
chr5	20283968	20283969	chr5:20283969:T:C	rs11949349	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	21160461	21160462	chr5:21160462:C:T	rs371821	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr5	21417049	21417050	chr5:21417050:G:A	rs11957493	G	A	.	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	21474261	21474262	chr5:21474262:T:G	rs9292978	T	G	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	22372667	22372668	chr5:22372668:T:C	rs13163688	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr5	22557514	22557515	chr5:22557515:G:A	rs13357733	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr5	22560175	22560176	chr5:22560176:A:C	rs115200211	A	C	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	23840251	23840252	chr5:23840252:T:C	rs185801068	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	23951098	23951099	chr5:23951099:A:G	rs10078669	A	G	a	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	24870921	24870922	chr5:24870922:A:G	rs1353061	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	25007183	25007184	chr5:25007184:A:G	rs11741737	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	25478484	25478485	chr5:25478485:G:A	rs17525483	G	A	g	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr5	26803252	26803253	chr5:26803253:C:G	rs62343985	C	G	C	Sox1.mouse_HMG_3	5	1	-	6.556276030768936	3.252961348736633	ACAAAGTCATTGA
chr5	27291984	27291985	chr5:27291985:G:A	rs72729012	G	A	G	Sox1.mouse_HMG_3	9	1	-	7.643413730240157	14.530323238040662	TCAATGCCACTGA
chr5	28405546	28405547	chr5:28405547:A:G	rs77031292	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.118362612782004	-1.6826645491350012	TCAATTTCTTTGC
chr5	28954340	28954341	chr5:28954341:G:C	rs182611	G	C	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	29002263	29002264	chr5:29002264:T:G	rs36080912	T	G	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	29230925	29230926	chr5:29230926:A:G	rs75070254	A	G	G	Sox1.mouse_HMG_3	9	1	-	4.016365003021772	-2.870544504778737	TCATTGGCATTGG
chr5	29633919	29633920	chr5:29633920:G:A	rs9918231	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr5	29786916	29786917	chr5:29786917:G:A	rs113719888	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	29786926	29786927	chr5:29786927:T:A	rs1167472417	T	A	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	30076207	30076208	chr5:30076208:C:G	rs7735679	C	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr5	30602442	30602443	chr5:30602443:C:T	rs17593648	C	T	C	Sox1.mouse_HMG_3	9	1	-	6.846630361080134	3.72779589039216	TCAAAATCAGTGA
chr5	30839223	30839224	chr5:30839224:A:G	rs2178490	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	30839239	30839240	chr5:30839240:G:T	rs12659427	G	T	G	Sox1.mouse_HMG_3	1	1	-	5.14760991873149	-1.7551428686278556	ACAATTCCATTCC
chr5	30894675	30894676	chr5:30894676:A:G	rs2330615	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr5	30997705	30997706	chr5:30997706:A:G	rs1500169	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr5	31174008	31174009	chr5:31174009:T:C	rs74657348	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	32004283	32004284	chr5:32004284:G:C	rs994043784	G	C	G	Sox1.mouse_HMG_3	6	1	-	6.2378950858745625	5.812932489095877	TTAATACCATTCA
chr5	32004294	32004295	chr5:32004295:C:A	rs74480011	C	A	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr5	32058008	32058009	chr5:32058009:A:G	rs151861	A	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr5	32427778	32427779	chr5:32427779:G:C	rs80085290	G	C	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	32483445	32483446	chr5:32483446:T:C	rs111456919	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr5	32776566	32776567	chr5:32776567:C:T	rs13436551	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr5	32790811	32790812	chr5:32790812:G:C	rs73073697	G	C	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr5	33170716	33170717	chr5:33170717:G:A	rs1479644	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	33321466	33321467	chr5:33321467:T:C	rs141436925	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	33338561	33338562	chr5:33338562:T:C	rs10040888	T	C	C	Sox1.mouse_HMG_3	8	1	-	6.086039968268302	-0.8227148110469185	AGAATAACATTGA
chr5	33444345	33444346	chr5:33444346:A:C	rs67450756	A	C	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr5	33610423	33610424	chr5:33610424:A:G	rs7729905	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	33680242	33680243	chr5:33680243:G:A	rs35953152	G	A	G	Sox1.mouse_HMG_3	1	1	-	6.039364260457109	1.0810920293434818	ACAATCACATTGT
chr5	33982938	33982939	chr5:33982939:A:G	rs250412	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr5	34035503	34035504	chr5:34035504:T:C	rs17583316	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr5	34045803	34045804	chr5:34045804:A:G	rs9292520	A	G	.	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr5	34184167	34184168	chr5:34184168:T:C	rs6893751	T	C	N	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr5	34523536	34523537	chr5:34523537:C:T	rs4703447	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr5	34684952	34684953	chr5:34684953:T:G	rs73089133	T	G	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	34840735	34840736	chr5:34840736:A:G	rs6451173	A	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	35030587	35030588	chr5:35030588:C:T	rs772379272	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	35164718	35164719	chr5:35164719:A:G	rs16872490	A	G	G	Sox1.mouse_HMG_3	6	1	-	5.2041394745287075	5.717217289639178	TCCATTTCATTGT
chr5	35210219	35210220	chr5:35210220:C:T	rs34024951	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	35342995	35342996	chr5:35342996:G:C	rs2115469	G	C	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	35436563	35436564	chr5:35436564:C:T	chr5:35436564:C:T	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	35685689	35685690	chr5:35685690:G:T	rs1034615634	G	T	G	Sox1.mouse_HMG_3	1	1	-	6.150156637458316	-0.7525961499010281	ACACTATCATTAA
chr5	35766078	35766079	chr5:35766079:T:C	rs6888729	T	C	t	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	35824819	35824820	chr5:35824820:T:C	rs2361395	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.050548307883615	-0.8582064714316056	TCACTCTCATTGC
chr5	36090226	36090227	chr5:36090227:C:T	chr5:36090227:C:T	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	36090243	36090244	chr5:36090244:C:T	rs55751780	C	T	C	Sox1.mouse_HMG_3	10	1	+	5.227740067096187	9.8629528629008	TCACTTTCATCGC
chr5	36147653	36147654	chr5:36147654:A:G	rs113484380	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.903681759081386	-1.9832277487191217	TCAGTAACATTAA
chr5	36361593	36361594	chr5:36361594:G:T	rs4413557	G	T	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	36739432	36739433	chr5:36739433:A:G	rs42320	A	G	G	Sox1.mouse_HMG_3	2	1	+	5.979492602388053	-0.9292621769271663	TCAAAATCATCGA
chr5	37490693	37490694	chr5:37490694:A:G	rs7727685	A	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr5	37735746	37735747	chr5:37735747:A:G	rs2910798	A	G	A	Sox1.mouse_HMG_3	10	1	-	11.322891416789547	6.687678620984936	TCAATTACAGTGA
chr5	37965510	37965511	chr5:37965511:C:T	rs13180084	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	38382925	38382926	chr5:38382926:C:A	chr5:38382926:C:A	C	A	C	Sox1.mouse_HMG_3	11	1	-	4.581747135270101	-2.3025552623372585	TCAACATCAGTGA
chr5	38640085	38640086	chr5:38640086:G:A	rs327284	G	A	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	38753346	38753347	chr5:38753347:C:A	rs75845289	C	A	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	39209916	39209917	chr5:39209917:T:C	rs138031210	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr5	39209923	39209924	chr5:39209924:T:A	rs260085	T	A	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	39258289	39258290	chr5:39258290:G:A	rs113741668	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	39260387	39260388	chr5:39260388:G:C	rs155452	G	C	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	39463094	39463095	chr5:39463095:G:A	rs17335879	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	39476685	39476686	chr5:39476686:T:C	rs113286996	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr5	39606826	39606827	chr5:39606827:C:T	rs72741790	C	T	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	39625525	39625526	chr5:39625526:T:A	rs34346322	T	A	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	40046559	40046560	chr5:40046560:T:C	rs2939374	T	C	C	Sox1.mouse_HMG_3	9	1	+	9.074202290395446	2.187292782594939	TCACTTTCATTGG
chr5	40067030	40067031	chr5:40067031:T:C	rs35313658	T	C	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	40166272	40166273	chr5:40166273:G:T	rs350080	G	T	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr5	40260870	40260871	chr5:40260871:G:T	rs116610283	G	T	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr5	40406625	40406626	chr5:40406626:G:A	rs537055082	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr5	40504245	40504246	chr5:40504246:T:C	rs1157159	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.801813854324676	-2.085095653475831	AAAATGCCATTGA
chr5	40551375	40551376	chr5:40551376:A:G	rs13160426	A	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	40599183	40599184	chr5:40599184:C:A	rs16870146	C	A	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	41334313	41334314	chr5:41334314:C:T	rs72755968	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	41505628	41505629	chr5:41505629:C:T	rs4346812	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	42804012	42804013	chr5:42804013:T:C	rs13168440	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	42829200	42829201	chr5:42829201:G:A	rs12519532	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	43171491	43171492	chr5:43171492:G:A	rs113122114	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.336847759102071	0.22700732811617286	TCACTAACATGGT
chr5	43258425	43258426	chr5:43258426:A:G	rs10462048	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	43521455	43521456	chr5:43521456:A:G	rs28437972	A	G	-	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr5	43730805	43730806	chr5:43730806:G:A	rs11737988	G	A	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	44189711	44189712	chr5:44189712:T:C	rs72759339	T	C	C	Sox1.mouse_HMG_3	0	1	+	6.024496348643273	-0.8276827934500106	TCAACAGCATTGT
chr5	44189715	44189716	chr5:44189716:C:A	rs188027348	C	A	C	Sox1.mouse_HMG_3	4	1	+	6.024496348643273	8.289379574453307	TCAACAGCATTGT
chr5	44338836	44338837	chr5:44338837:G:A	rs76399717	G	A	G	Sox1.mouse_HMG_3	1	1	-	4.817799413197885	-0.14047281791574218	TCAATAACAATAA
chr5	44361403	44361404	chr5:44361404:G:A	rs339508	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.1739038977841325	5.259680759530836	TCTATGACATTGC
chr5	44571111	44571112	chr5:44571112:G:A	rs57607823	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr5	49601176	49601177	chr5:49601177:T:G	rs1224013963	T	G	.	Sox1.mouse_HMG_3	2	1	-	5.809201985891708	-1.0995527934235123	TCACTTCCATTCC
chr5	49601186	49601187	chr5:49601187:C:A	chr5:49601187:C:A	C	A	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	49601217	49601218	chr5:49601218:C:G	rs1309244566	C	G	.	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr5	49601235	49601236	chr5:49601236:T:A	chr5:49601236:T:A	T	A	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	49601299	49601300	chr5:49601300:T:A	rs1168904158	T	A	.	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr5	49602350	49602351	chr5:49602351:T:A	chr5:49602351:T:A	T	A	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	49602725	49602726	chr5:49602726:G:T	rs1391203031	G	T	.	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	49602902	49602903	chr5:49602903:C:G	rs1374481636	C	G	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	49656304	49656305	chr5:49656305:C:A	chr5:49656305:C:A	C	A	.	Sox1.mouse_HMG_3	1	1	+	5.14760991873149	-1.7551428686278556	ACAATTCCATTCC
chr5	49656892	49656893	chr5:49656893:A:T	chr5:49656893:A:T	A	T	.	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	49656914	49656915	chr5:49656915:T:A	chr5:49656915:T:A	T	A	.	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr5	49656967	49656968	chr5:49656968:A:T	chr5:49656968:A:T	A	T	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	49656968	49656969	chr5:49656969:C:T	rs1325349201	C	T	.	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	49656990	49656991	chr5:49656991:G:C	rs1426184218	G	C	.	Sox1.mouse_HMG_3	11	1	+	5.631440427892477	1.0646117357729126	TCCATTCCATTGC
chr5	49657256	49657257	chr5:49657257:C:G	rs1173104674	C	G	.	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	49657517	49657518	chr5:49657518:C:A	rs1228652875	C	A	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	49657527	49657528	chr5:49657528:A:G	chr5:49657528:A:G	A	G	.	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr5	49657545	49657546	chr5:49657546:C:A	rs1374461714	C	A	.	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	49657899	49657900	chr5:49657900:A:C	chr5:49657900:A:C	A	C	.	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	49657903	49657904	chr5:49657904:T:G	rs1399842595	T	G	.	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	49657914	49657915	chr5:49657915:T:G	chr5:49657915:T:G	T	G	.	Sox1.mouse_HMG_3	0	1	+	5.631440427892477	-1.2207387142008093	TCCATTCCATTGC
chr5	49658019	49658020	chr5:49658020:G:C	rs1316647019	G	C	.	Sox1.mouse_HMG_3	11	1	+	9.714438610851053	5.14760991873149	ACAATTCCATTGC
chr5	49658038	49658039	chr5:49658039:C:T	rs1248762273	C	T	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	49658085	49658086	chr5:49658086:A:G	rs1185527466	A	G	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	49658179	49658180	chr5:49658180:G:A	rs1169191239	G	A	.	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	49658193	49658194	chr5:49658194:A:C	rs1480550650	A	C	.	Sox1.mouse_HMG_3	2	1	+	7.184615942582777	0.27586116326755894	TCAATTCCATTCG
chr5	49658199	49658200	chr5:49658200:A:T	chr5:49658200:A:T	A	T	.	Sox1.mouse_HMG_3	8	1	+	7.184615942582777	0.27586116326755805	TCAATTCCATTCG
chr5	49658203	49658204	chr5:49658204:G:C	rs1196856332	G	C	.	Sox1.mouse_HMG_3	12	1	+	7.184615942582777	7.973366515088131	TCAATTCCATTCG
chr5	49658212	49658213	chr5:49658213:C:G	chr5:49658213:C:G	C	G	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	49658218	49658219	chr5:49658219:G:A	chr5:49658219:G:A	G	A	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	49658399	49658400	chr5:49658400:C:A	rs1407689932	C	A	.	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	49658459	49658460	chr5:49658460:T:C	chr5:49658460:T:C	T	C	.	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	49658591	49658592	chr5:49658592:T:C	rs1241000913	T	C	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	49658596	49658597	chr5:49658597:C:G	chr5:49658597:C:G	C	G	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr5	49658793	49658794	chr5:49658794:G:A	rs1455614732	G	A	.	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	49659073	49659074	chr5:49659074:T:C	rs1339424383	T	C	.	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	49659114	49659115	chr5:49659115:A:C	rs1339506685	A	C	.	Sox1.mouse_HMG_3	8	1	+	5.631440427892477	-1.2773143514227454	TCCATTCCATTGC
chr5	49659115	49659116	chr5:49659116:T:C	rs1297967348	T	C	.	Sox1.mouse_HMG_3	9	1	+	5.631440427892477	-1.2554690799080321	TCCATTCCATTGC
chr5	49659162	49659163	chr5:49659163:A:C	rs1476964172	A	C	.	Sox1.mouse_HMG_3	2	1	+	5.809201985891708	-1.0995527934235123	TCACTTCCATTCC
chr5	49659824	49659825	chr5:49659825:A:G	rs1304838145	A	G	.	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	49659825	49659826	chr5:49659826:T:G	rs1456369602	T	G	.	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	49660100	49660101	chr5:49660101:C:T	chr5:49660101:C:T	C	T	.	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr5	49660102	49660103	chr5:49660103:G:C	rs1459117424	G	C	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	49660103	49660104	chr5:49660104:G:T	chr5:49660104:G:T	G	T	.	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr5	49660211	49660212	chr5:49660212:T:C	chr5:49660212:T:C	T	C	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	49661187	49661188	chr5:49661188:A:C	rs1413941839	A	C	.	Sox1.mouse_HMG_3	2	1	+	7.973366515088131	1.0646117357729126	TCAATTCCATTCC
chr5	49661326	49661327	chr5:49661327:C:G	rs1166381031	C	G	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	49661372	49661373	chr5:49661373:A:C	rs1289377928	A	C	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	49666297	49666298	chr5:49666298:C:A	rs1347147889	C	A	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	49666343	49666344	chr5:49666344:C:A	chr5:49666344:C:A	C	A	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	49666525	49666526	chr5:49666526:T:C	chr5:49666526:T:C	T	C	.	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	49667007	49667008	chr5:49667008:C:T	rs1334654681	C	T	.	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr5	49667060	49667061	chr5:49667061:A:G	chr5:49667061:A:G	A	G	.	Sox1.mouse_HMG_3	8	1	+	5.631440427892477	-1.2773143514227454	TCCATTCCATTGC
chr5	50856620	50856621	chr5:50856621:G:A	rs16886818	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr5	50856632	50856633	chr5:50856633:T:C	rs27964	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.6532856994071885	1.0180729036025737	TCAATTCCAATGC
chr5	50901160	50901161	chr5:50901161:C:T	rs72756179	C	T	C	Sox1.mouse_HMG_3	3	1	+	10.513360882634512	5.876498249913929	TCACTTACATTGT
chr5	50969251	50969252	chr5:50969252:C:T	rs2289879	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr5	51396766	51396767	chr5:51396767:T:A	rs79435602	T	A	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	52063117	52063118	chr5:52063118:C:G	rs10070998	C	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	52743137	52743138	chr5:52743138:A:G	rs1026572431	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	52909959	52909960	chr5:52909960:G:C	rs3733882	G	C	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	53009165	53009166	chr5:53009166:A:G	rs153141	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	53045528	53045529	chr5:53045529:C:T	rs3212462	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.47786836911129	0.5195961379976635	TCACTTTCATTTA
chr5	53048215	53048216	chr5:53048216:G:A	rs3212486	G	A	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	53080288	53080289	chr5:53080289:G:A	rs3212613	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	53439063	53439064	chr5:53439064:G:A	rs75565133	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	53539924	53539925	chr5:53539925:C:T	rs11743522	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	53560656	53560657	chr5:53560657:A:T	rs73754255	A	T	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	53560673	53560674	chr5:53560674:G:C	rs2279516	G	C	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	53560699	53560700	chr5:53560700:C:A	chr5:53560700:C:A	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	53645319	53645320	chr5:53645320:A:T	rs377159	A	T	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr5	53838729	53838730	chr5:53838730:T:C	rs10940344	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr5	54220739	54220740	chr5:54220740:G:A	rs78229663	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	54401726	54401727	chr5:54401727:C:A	rs59995759	C	A	C	Sox1.mouse_HMG_3	9	1	-	6.693732502645441	10.461807539757974	TCACTTCCAGTGT
chr5	54458715	54458716	chr5:54458716:G:C	rs72762097	G	C	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	54537732	54537733	chr5:54537733:A:G	rs11744803	A	G	G	Sox1.mouse_HMG_3	10	1	-	8.485854270235782	3.850641474431168	GCAATAGCATTGA
chr5	54735382	54735383	chr5:54735383:A:G	rs12516335	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr5	54981826	54981827	chr5:54981827:G:A	rs11745146	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr5	55303231	55303232	chr5:55303232:C:T	chr5:55303232:C:T	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr5	55351771	55351772	chr5:55351772:A:G	rs10071980	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	55701502	55701503	chr5:55701503:C:G	rs3846509	C	G	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	56078017	56078018	chr5:56078018:T:C	rs17349595	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr5	56183644	56183645	chr5:56183645:A:C	rs6871908	A	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	56269268	56269269	chr5:56269269:C:G	rs387432	C	G	G	Sox1.mouse_HMG_3	7	1	+	5.617826096345867	-1.2619102941187437	TCTATAACATTGG
chr5	56798886	56798887	chr5:56798887:T:C	rs62355938	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	56984285	56984286	chr5:56984286:C:G	rs76768919	C	G	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr5	57095359	57095360	chr5:57095360:A:G	rs111967458	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr5	57175111	57175112	chr5:57175112:G:T	rs73757313	G	T	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	57687645	57687646	chr5:57687646:C:A	rs229959	C	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	57697633	57697634	chr5:57697634:T:A	rs750857877	T	A	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	57697657	57697658	chr5:57697658:T:C	rs2898027	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.441734799300255	-1.445174708500254	TCACTTTTATTGG
chr5	57818381	57818382	chr5:57818382:G:A	rs7723284	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	57844543	57844544	chr5:57844544:T:C	rs141265617	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr5	58405024	58405025	chr5:58405025:C:T	rs10472060	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr5	58796546	58796547	chr5:58796547:T:A	rs10940626	T	A	A	Sox1.mouse_HMG_3	8	1	-	5.9664938025139005	-0.9422609768013204	TCTCTTCCATTGA
chr5	58853743	58853744	chr5:58853744:C:T	rs295675	C	T	C	Sox1.mouse_HMG_3	11	1	-	9.587280105505917	5.477439674520019	TCACTTCCATTGG
chr5	58853755	58853756	chr5:58853756:G:A	rs295676	G	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr5	58860862	58860863	chr5:58860863:T:C	rs9292180	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr5	59035984	59035985	chr5:59035985:C:T	rs2291851	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	59163251	59163252	chr5:59163252:G:T	rs6450506	G	T	g	Sox1.mouse_HMG_3	6	1	-	4.87170824423773	4.923261587114268	TCAATTCGATTGG
chr5	59188402	59188403	chr5:59188403:C:T	rs190594545	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	59666820	59666821	chr5:59666821:T:C	rs184494277	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	59732932	59732933	chr5:59732933:G:A	rs7711313	G	A	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	59746050	59746051	chr5:59746051:A:C	rs7709094	A	C	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	59769205	59769206	chr5:59769206:C:T	rs77448214	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr5	59791661	59791662	chr5:59791662:C:T	rs75724778	C	T	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr5	59799222	59799223	chr5:59799223:C:G	rs111672810	C	G	C	Sox1.mouse_HMG_3	7	1	+	4.899551537641425	-1.9801848528231853	ACAGTTTCATTGA
chr5	59831741	59831742	chr5:59831742:C:T	rs16890246	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr5	60056041	60056042	chr5:60056042:T:C	rs4700359	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.813669191757924	-1.9873579701590818	ACAATTTCACTGA
chr5	60577323	60577324	chr5:60577324:T:A	rs79013311	T	A	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	60836056	60836057	chr5:60836057:T:C	rs17332108	T	C	T	Sox1.mouse_HMG_3	0	1	-	6.028484633435889	2.0020620876992465	ACAATACCGTTGA
chr5	60883473	60883474	chr5:60883474:A:G	rs6449509	A	G	g	Sox1.mouse_HMG_3	3	1	+	4.520036112129844	-2.2809910497871617	TCAATTCTACTGA
chr5	60883490	60883491	chr5:60883491:T:C	rs6449510	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	60945314	60945315	chr5:60945315:G:A	rs158921	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	61002532	61002533	chr5:61002533:A:G	rs290506	A	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	61229432	61229433	chr5:61229433:T:C	rs77617908	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr5	61308025	61308026	chr5:61308026:T:G	rs7704636	T	G	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	61399343	61399344	chr5:61399344:G:A	rs6860608	G	A	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	61633119	61633120	chr5:61633120:C:G	rs9291731	C	G	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr5	61661307	61661308	chr5:61661308:T:C	rs430637	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr5	61771088	61771089	chr5:61771089:C:T	rs990728	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	61901575	61901576	chr5:61901576:A:G	rs7717058	A	G	A	Sox1.mouse_HMG_3	0	1	-	5.93871948689657	-0.913459655196714	TCAATAGCATGGC
chr5	62316161	62316162	chr5:62316162:A:G	rs7718580	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	62384620	62384621	chr5:62384621:T:C	rs152189	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.758505838548553	1.9574786766315486	TCAATAACAGTGG
chr5	62580945	62580946	chr5:62580946:C:T	rs115682516	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr5	62722469	62722470	chr5:62722470:C:T	rs4700506	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr5	63155157	63155158	chr5:63155158:T:C	rs13169796	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	63428813	63428814	chr5:63428814:A:G	rs553673985	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	63507413	63507414	chr5:63507414:C:T	rs113034409	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr5	64489299	64489300	chr5:64489300:G:T	rs1380771	G	T	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr5	65483103	65483104	chr5:65483104:G:A	rs10514987	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr5	65625924	65625925	chr5:65625925:T:C	rs37253	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	65835525	65835526	chr5:65835526:C:G	rs71632542	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	66230676	66230677	chr5:66230677:A:G	rs253224	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	66441132	66441133	chr5:66441133:A:G	rs188072131	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	66539082	66539083	chr5:66539083:C:G	rs7708179	C	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr5	66598633	66598634	chr5:66598634:T:G	rs7700850	T	G	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr5	66617412	66617413	chr5:66617413:T:A	rs4073361	T	A	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	66814311	66814312	chr5:66814312:G:A	rs149799237	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	66933271	66933272	chr5:66933272:T:G	rs72763018	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	67063457	67063458	chr5:67063458:T:A	rs77591491	T	A	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	67095377	67095378	chr5:67095378:C:T	rs114832876	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	67180022	67180023	chr5:67180023:T:A	rs6890674	T	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	67258619	67258620	chr5:67258620:A:G	rs17224193	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	67378160	67378161	chr5:67378161:C:T	rs930083	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr5	67401180	67401181	chr5:67401181:G:A	rs114894651	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	67640433	67640434	chr5:67640434:A:G	rs4078049	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	67699783	67699784	chr5:67699784:G:A	rs77591258	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr5	68010925	68010926	chr5:68010926:A:G	rs13358352	A	G	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	68010947	68010948	chr5:68010948:G:C	rs281441	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	68214919	68214920	chr5:68214920:C:A	chr5:68214920:C:A	C	A	c	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	68214919	68214920	chr5:68214920:C:G	rs866194809	C	G	c	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	68287042	68287043	chr5:68287043:T:C	rs67913607	T	C	C	Sox1.mouse_HMG_3	10	1	+	9.948729724647503	5.313516928842889	TCACTTTCATTGT
chr5	68287046	68287047	chr5:68287047:G:A	rs68180970	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	68365068	68365069	chr5:68365069:C:T	rs256500	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	68418418	68418419	chr5:68418419:A:G	rs4976033	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	68658422	68658423	chr5:68658423:C:G	rs3857277	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	68848315	68848316	chr5:68848316:G:A	rs6897206	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	71901719	71901720	chr5:71901720:G:A	rs4594836	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	72037225	72037226	chr5:72037226:G:A	rs75125902	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	72294699	72294700	chr5:72294700:G:A	rs73127296	G	A	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr5	72597084	72597085	chr5:72597085:G:A	rs33425	G	A	A	Sox1.mouse_HMG_3	3	1	-	7.037196266544157	2.400333633823577	ACACTTTCATTGC
chr5	72752921	72752922	chr5:72752922:C:T	rs16901102	C	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	72847538	72847539	chr5:72847539:A:T	rs117956688	A	T	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr5	73229463	73229464	chr5:73229464:T:G	rs115946512	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	73417179	73417180	chr5:73417180:A:C	rs55674522	A	C	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr5	73420697	73420698	chr5:73420698:T:A	rs2922717	T	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	73546351	73546352	chr5:73546352:A:G	rs819594	A	G	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	73668122	73668123	chr5:73668123:C:T	rs10805881	C	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	73692117	73692118	chr5:73692118:G:A	rs72770822	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	73734410	73734411	chr5:73734411:A:G	rs55991811	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr5	73786654	73786655	chr5:73786655:G:A	rs79422618	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.92700451199339	0.968732280879764	TCACTTGCATTAT
chr5	73867439	73867440	chr5:73867440:G:A	rs72772556	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	74129780	74129781	chr5:74129781:A:G	rs537263355	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr5	74150038	74150039	chr5:74150039:A:G	rs176658	A	G	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr5	74207496	74207497	chr5:74207497:T:C	rs72776400	T	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	74385256	74385257	chr5:74385257:T:C	rs564979	T	C	c	Sox1.mouse_HMG_3	5	1	-	8.862899987493106	7.630227216426016	TCAATACCATGGA
chr5	74594529	74594530	chr5:74594530:C:T	rs73765022	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	74681819	74681820	chr5:74681820:T:C	rs17670514	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	74799813	74799814	chr5:74799814:C:T	rs12656070	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr5	74855510	74855511	chr5:74855511:G:C	rs72764687	G	C	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr5	74935048	74935049	chr5:74935049:C:T	rs80204980	C	T	C	Sox1.mouse_HMG_3	7	1	+	6.379475707682545	2.7470082165873504	TCAATACCATTTC
chr5	74957475	74957476	chr5:74957476:T:C	rs4704162	T	C	C	Sox1.mouse_HMG_3	4	1	+	4.543387204756453	-2.3567088168581938	TCACTGGCATTAG
chr5	75007270	75007271	chr5:75007271:A:C	rs72768303	A	C	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	75007293	75007294	chr5:75007294:A:G	rs7731533	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	75277657	75277658	chr5:75277658:C:T	rs114791351	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr5	75412803	75412804	chr5:75412804:G:C	rs28609217	G	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr5	75533939	75533940	chr5:75533940:A:G	rs150397862	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr5	75641314	75641315	chr5:75641315:C:A	rs181441553	C	A	C	Sox1.mouse_HMG_3	11	1	-	4.570135942061558	-2.314166455545801	ACAAAGCCATTGC
chr5	75668302	75668303	chr5:75668303:C:T	rs34357	C	T	t	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	76086067	76086068	chr5:76086068:C:A	rs28620	C	A	a	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	76225774	76225775	chr5:76225775:A:G	rs10059683	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr5	76426367	76426368	chr5:76426368:G:A	rs4615280	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr5	76426377	76426378	chr5:76426378:A:T	rs572675973	A	T	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	76590323	76590324	chr5:76590324:T:C	rs2270908	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	76590342	76590343	chr5:76590343:A:G	rs2270907	A	G	a	Sox1.mouse_HMG_3	9	1	-	4.987666755973212	-1.899242751827296	ACAGTTGCATTGA
chr5	76818698	76818699	chr5:76818699:A:G	rs2242989	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	77333716	77333717	chr5:77333717:T:A	rs11741458	T	A	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	77383574	77383575	chr5:77383575:T:C	rs55753522	T	C	T	Sox1.mouse_HMG_3	5	1	-	4.343988174894903	3.1113154038278155	GCAATACCATTCA
chr5	77501278	77501279	chr5:77501279:T:C	rs6883348	T	C	C	Sox1.mouse_HMG_3	0	1	-	6.580037249663468	2.553614703926825	ACACTAGCAGTGA
chr5	77637952	77637953	chr5:77637953:A:G	rs56357433	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.442977436716424	-2.4657773425987983	TCACAGCCATTGG
chr5	77785842	77785843	chr5:77785843:C:T	rs11746827	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	77785854	77785855	chr5:77785855:C:T	rs254400	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	78144510	78144511	chr5:78144511:T:C	rs4364371	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	78443329	78443330	chr5:78443330:T:C	rs1019803	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	78638568	78638569	chr5:78638569:C:T	rs541169012	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr5	78638577	78638578	chr5:78638578:G:A	rs76942426	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	78782005	78782006	chr5:78782006:A:G	rs7721866	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.194295172778473	0.5590823769738582	CCAATAACAGTGA
chr5	78904361	78904362	chr5:78904362:C:T	rs337860	C	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	78907842	78907843	chr5:78907843:A:G	rs337852	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	78958981	78958982	chr5:78958982:C:T	rs7708387	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	79238596	79238597	chr5:79238597:A:G	rs371761882	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	79802679	79802680	chr5:79802680:G:C	rs10942903	G	C	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	79812652	79812653	chr5:79812653:T:C	rs13185886	T	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	80110402	80110403	chr5:80110403:G:C	rs256435	G	C	C	Sox1.mouse_HMG_3	11	1	+	6.691269242119043	2.12444054999948	TCAAATGCATTGG
chr5	80143489	80143490	chr5:80143490:T:C	rs13362035	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	80229485	80229486	chr5:80229486:A:G	rs10041917	A	G	a	Sox1.mouse_HMG_3	2	1	+	6.02670590309101	-0.8820488762242102	TCACCTACATTGA
chr5	80291293	80291294	chr5:80291294:A:G	rs28508166	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	80755052	80755053	chr5:80755053:C:T	rs1041721047	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	80895594	80895595	chr5:80895595:G:T	rs10057510	G	T	G	Sox1.mouse_HMG_3	7	1	-	6.328181077947361	1.037679892599333	ACAATACCATTAC
chr5	81019208	81019209	chr5:81019209:T:G	rs150241884	T	G	T	Sox1.mouse_HMG_3	0	1	+	8.814751939272021	1.962572797178738	TCAATAGCATTAT
chr5	81062793	81062794	chr5:81062794:A:T	rs540149	A	T	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	81908083	81908084	chr5:81908084:T:C	rs1001797	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	82587342	82587343	chr5:82587343:T:C	rs1847053	T	C	C	Sox1.mouse_HMG_3	3	1	-	5.847947502820089	-0.9530796590969162	TGAATATCATTGC
chr5	82633398	82633399	chr5:82633399:C:A	rs35748674	C	A	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	82738866	82738867	chr5:82738867:C:T	rs13176318	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	82851143	82851144	chr5:82851144:T:C	rs10942314	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr5	83267451	83267452	chr5:83267452:G:A	rs28360246	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr5	83434108	83434109	chr5:83434109:C:T	rs185356	C	T	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	83720228	83720229	chr5:83720229:A:G	rs2124884	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	83924220	83924221	chr5:83924221:C:T	rs35871321	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr5	84576034	84576035	chr5:84576035:G:T	rs62362066	G	T	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	84636150	84636151	chr5:84636151:C:T	rs58203746	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr5	85033825	85033826	chr5:85033826:C:T	rs79776100	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr5	85210822	85210823	chr5:85210823:A:G	rs78299284	A	G	.	Sox1.mouse_HMG_3	3	1	+	8.930246954376932	2.1292197924599248	TCAATAACATTTA
chr5	85210849	85210850	chr5:85210850:C:T	rs4432930	C	T	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	85285286	85285287	chr5:85285287:G:A	rs10070127	G	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr5	85938642	85938643	chr5:85938643:G:A	rs7702973	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	86619098	86619099	chr5:86619099:T:A	rs971223594	T	A	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr5	86750187	86750188	chr5:86750188:T:C	rs12332473	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	86878446	86878447	chr5:86878447:G:A	rs10054518	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr5	87195231	87195232	chr5:87195232:A:T	rs1036527952	A	T	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr5	87311815	87311816	chr5:87311816:G:A	rs10058449	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	88558598	88558599	chr5:88558599:C:T	rs4916724	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	88675969	88675970	chr5:88675970:C:A	chr5:88675970:C:A	C	A	C	Sox1.mouse_HMG_3	7	1	+	5.9751525602144735	0.6846513748664427	TCACGTCCATTGA
chr5	88675977	88675978	chr5:88675978:T:A	rs1318571122	T	A	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr5	88692915	88692916	chr5:88692916:A:G	rs2304607	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.226090230180219	0.5908774343756054	TCATTTTCATTGC
chr5	89339192	89339193	chr5:89339193:C:A	rs144535645	C	A	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr5	89722784	89722785	chr5:89722785:C:T	rs17512887	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	89932741	89932742	chr5:89932742:C:T	rs183808490	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	90356068	90356069	chr5:90356069:A:T	rs7349826	A	T	A	Sox1.mouse_HMG_3	0	1	-	9.891122500110459	7.065365903753818	TCAAATTCATTGA
chr5	91020672	91020673	chr5:91020673:T:C	rs116624629	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr5	91101911	91101912	chr5:91101912:A:G	rs6859589	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	91280461	91280462	chr5:91280462:G:A	rs13355819	G	A	G	Sox1.mouse_HMG_3	9	1	+	6.934745579411921	3.8159111087239457	TCAAAAGCAGTGA
chr5	91361525	91361526	chr5:91361526:T:G	rs147259291	T	G	T	Sox1.mouse_HMG_3	4	1	+	8.300489698826743	1.400393677212096	TCAATCTCATTGT
chr5	91366915	91366916	chr5:91366916:C:T	rs62376561	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	91385131	91385132	chr5:91385132:G:A	rs7705465	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr5	91642290	91642291	chr5:91642291:A:G	rs148320994	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	91680251	91680252	chr5:91680252:T:C	rs2935250	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	91813973	91813974	chr5:91813974:C:T	rs2913417	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	92308208	92308209	chr5:92308209:A:C	rs4279370	A	C	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr5	92329590	92329591	chr5:92329591:A:C	rs12109676	A	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	92889803	92889804	chr5:92889804:G:C	rs17082694	G	C	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	93886471	93886472	chr5:93886472:A:G	rs896729	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	94661180	94661181	chr5:94661181:A:G	rs3947399	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr5	94693617	94693618	chr5:94693618:G:A	rs57238477	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr5	94787402	94787403	chr5:94787403:C:T	rs185308	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	95318168	95318169	chr5:95318169:G:A	rs255982	G	A	G	Sox1.mouse_HMG_3	7	1	-	4.852128416204848	1.2196609251096557	TCATTACCATTAA
chr5	95486787	95486788	chr5:95486788:T:A	rs149966104	T	A	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	95646671	95646672	chr5:95646672:G:A	rs185090743	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	95646671	95646672	chr5:95646672:G:C	chr5:95646672:G:C	G	C	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	95646673	95646674	chr5:95646674:C:G	rs566368392	C	G	C	Sox1.mouse_HMG_3	11	1	-	4.69738795812891	0.13055926600934642	TCTATGGCATTGC
chr5	95646675	95646676	chr5:95646676:A:G	chr5:95646676:A:G	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.69738795812891	-2.189521549671598	TCTATGGCATTGC
chr5	95732878	95732879	chr5:95732879:G:A	rs34894	G	A	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	95761792	95761793	chr5:95761793:A:C	rs7717280	A	C	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	96563416	96563417	chr5:96563417:T:C	rs2578697	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr5	96597877	96597878	chr5:96597878:C:T	rs55751508	C	T	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	96730661	96730662	chr5:96730662:C:A	rs17400685	C	A	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr5	96806779	96806780	chr5:96806780:T:G	rs62376387	T	G	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr5	96869195	96869196	chr5:96869196:G:C	rs10515251	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	96894045	96894046	chr5:96894046:G:T	rs2247650	G	T	G	Sox1.mouse_HMG_3	1	1	-	4.609272739797124	-2.2934800475622206	TCAATGTCTTTGC
chr5	97010034	97010035	chr5:97010035:A:G	rs27711	A	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr5	97061249	97061250	chr5:97061250:A:C	rs78698852	A	C	C	Sox1.mouse_HMG_3	2	1	+	4.787034297796355	-2.1217204815188633	TCACTGTCATTCC
chr5	97061253	97061254	chr5:97061254:T:C	rs74941991	T	C	C	Sox1.mouse_HMG_3	6	1	+	4.787034297796355	5.300112112906827	TCACTGTCATTCC
chr5	97162161	97162162	chr5:97162162:C:T	rs56410653	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.046998152133288	-0.06284227885261062	TCACTTGCAGCGA
chr5	97162190	97162191	chr5:97162191:T:C	rs535173814	T	C	t	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	97229575	97229576	chr5:97229576:G:A	rs17630655	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr5	97908296	97908297	chr5:97908297:T:A	rs11742033	T	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	97936398	97936399	chr5:97936399:T:C	rs73776246	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	97936400	97936401	chr5:97936401:T:G	rs17087923	T	G	T	Sox1.mouse_HMG_3	12	1	-	8.130658331710324	5.631440427892475	TCAATTCCTTTGA
chr5	98103358	98103359	chr5:98103359:A:G	rs1862163	A	G	A	Sox1.mouse_HMG_3	6	1	+	6.746436689884765	6.2699207502295415	TTAATAACATTAA
chr5	98173465	98173466	chr5:98173466:G:C	rs11135558	G	C	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	98206168	98206169	chr5:98206169:T:C	rs115307902	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.143721527512412	-1.708457614580872	TGAATAACAGTGA
chr5	98231351	98231352	chr5:98231352:G:C	rs142118300	G	C	c	Sox1.mouse_HMG_3	1	1	-	4.744400798806634	-2.1583519885527096	TCGATACCATTAA
chr5	98231355	98231356	chr5:98231356:T:C	rs146209901	T	C	t	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr5	99178119	99178120	chr5:99178120:T:G	rs10056524	T	G	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	99525548	99525549	chr5:99525549:A:G	rs138365714	A	G	a	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	99811803	99811804	chr5:99811804:G:A	rs7704049	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	99811826	99811827	chr5:99811827:C:G	rs7705200	C	G	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	99811944	99811945	chr5:99811945:A:G	rs35555250	A	G	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	99811973	99811974	chr5:99811974:T:C	rs11956491	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	100122565	100122566	chr5:100122566:T:C	rs4429827	T	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	100535182	100535183	chr5:100535183:C:G	rs112231673	C	G	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	100693515	100693516	chr5:100693516:A:T	rs2590424	A	T	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr5	100780814	100780815	chr5:100780815:G:A	rs17778598	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	100837366	100837367	chr5:100837367:T:C	rs2548263	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.474302895830373	-2.4126066119701353	GCAATTGCATTGG
chr5	100940162	100940163	chr5:100940163:C:T	rs113831677	C	T	c	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	101531350	101531351	chr5:101531351:G:A	rs350535	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	102346679	102346680	chr5:102346680:T:C	rs1584716	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.607177838706537	-1.301576940608683	ACAATTGCAGTGT
chr5	102584150	102584151	chr5:102584151:T:C	rs72781841	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.717217289639178	-1.191537489676043	TCCATTCCATTGT
chr5	102617411	102617412	chr5:102617412:C:T	rs10067699	C	T	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	102747716	102747717	chr5:102747717:T:C	rs419199	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	102826880	102826881	chr5:102826881:A:G	chr5:102826881:A:G	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.465889366527012	0.5789798587265043	ATAATATCATTGA
chr5	103119442	103119443	chr5:103119443:C:T	rs78947218	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr5	103452674	103452675	chr5:103452675:C:T	rs1358453183	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	103475922	103475923	chr5:103475923:G:A	rs188347	G	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr5	103563122	103563123	chr5:103563123:T:C	rs368798432	T	C	T	Sox1.mouse_HMG_3	2	1	-	11.326482037923656	4.417727258608437	TCAATTGCATTGG
chr5	103600730	103600731	chr5:103600731:C:T	rs952497	C	T	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr5	103755739	103755740	chr5:103755740:T:C	rs10079375	T	C	.	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr5	103778973	103778974	chr5:103778974:A:G	rs149597014	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	104147499	104147500	chr5:104147500:A:G	rs139938108	A	G	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr5	104265540	104265541	chr5:104265541:A:G	rs114044436	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	104361501	104361502	chr5:104361502:A:C	rs112536801	A	C	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	104444876	104444877	chr5:104444877:T:C	rs17405024	T	C	T	Sox1.mouse_HMG_3	8	1	-	7.069496125193778	0.16074134587855804	TCAATAACATCAA
chr5	104612266	104612267	chr5:104612267:T:C	rs2431108	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr5	105155185	105155186	chr5:105155186:C:T	rs10043572	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	105433224	105433225	chr5:105433225:T:C	rs34620659	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	105632534	105632535	chr5:105632535:C:T	rs10070309	C	T	T	Sox1.mouse_HMG_3	1	1	+	8.744201778859892	3.7859295477462642	ACAATAGCAGTGA
chr5	105632548	105632549	chr5:105632549:T:C	rs10079505	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr5	105817329	105817330	chr5:105817330:T:C	rs75461962	T	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	105882904	105882905	chr5:105882905:A:T	rs10447297	A	T	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	106375398	106375399	chr5:106375399:G:C	rs11746628	G	C	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr5	106481692	106481693	chr5:106481693:G:A	rs191155580	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	106646355	106646356	chr5:106646356:C:T	rs28510213	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	106875194	106875195	chr5:106875195:G:A	rs78339743	G	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	107172756	107172757	chr5:107172757:G:C	rs12516271	G	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr5	107399788	107399789	chr5:107399789:A:G	rs252812	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	107425756	107425757	chr5:107425757:T:C	rs116423601	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	107543362	107543363	chr5:107543363:C:T	rs6884705	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr5	107660329	107660330	chr5:107660330:A:G	chr5:107660330:A:G	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	107724698	107724699	chr5:107724699:C:T	rs56159505	C	T	-	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	107774407	107774408	chr5:107774408:T:C	rs249981	T	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	107782291	107782292	chr5:107782292:A:G	rs12520844	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	107794840	107794841	chr5:107794841:T:A	rs62355926	T	A	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	107822292	107822293	chr5:107822293:C:T	rs62358081	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	107822331	107822332	chr5:107822332:T:C	rs62358082	T	C	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr5	108296022	108296023	chr5:108296023:T:C	rs73214575	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	108420452	108420453	chr5:108420453:C:G	rs17161316	C	G	c	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	108863397	108863398	chr5:108863398:C:T	rs770511444	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	109550365	109550366	chr5:109550366:T:C	rs76984613	T	C	T	Sox1.mouse_HMG_3	2	1	-	7.62358250855573	0.7148277292405096	TAAATTTCATTGA
chr5	109578103	109578104	chr5:109578104:A:G	rs145851316	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.573088377569528	-2.227938784347477	TCCATATCAGTGA
chr5	109777886	109777887	chr5:109777887:C:T	rs34595717	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr5	109777907	109777908	chr5:109777908:A:G	rs12514321	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.441734799300255	-1.4670199800149668	TCACTTTTATTGG
chr5	109986671	109986672	chr5:109986672:T:C	rs36803	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr5	110034716	110034717	chr5:110034717:T:C	rs11241043	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.242412139654796	-2.6663426396604244	TCACTAACCTTGC
chr5	110738537	110738538	chr5:110738538:A:C	rs72773192	A	C	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	110738540	110738541	chr5:110738541:T:G	rs376247108	T	G	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	110852554	110852555	chr5:110852555:G:T	rs1423158	G	T	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	111158547	111158548	chr5:111158548:G:A	rs9326826	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.314205448512006	0.3559332173983789	TCATTTGCATTGC
chr5	111297297	111297298	chr5:111297298:C:T	rs140374848	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr5	111511332	111511333	chr5:111511333:A:G	rs152877	A	G	A	Sox1.mouse_HMG_3	2	1	+	6.104490358020287	-0.8042644212949326	ACAATAACATTTA
chr5	111511337	111511338	chr5:111511338:C:T	rs138664285	C	T	C	Sox1.mouse_HMG_3	7	1	+	6.104490358020287	2.4720228669250957	ACAATAACATTTA
chr5	111530464	111530465	chr5:111530465:G:A	rs145149457	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	111638850	111638851	chr5:111638851:A:G	rs2118697	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.515406818325419	-1.3715026894750895	ACCATATCATTGA
chr5	111674182	111674183	chr5:111674183:A:G	rs112515146	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	111722146	111722147	chr5:111722147:A:C	rs17842605	A	C	A	Sox1.mouse_HMG_3	12	1	+	4.9443261144185495	2.4451082106007003	TCTCTGTCATTGA
chr5	111758896	111758897	chr5:111758897:G:A	rs32334	G	A	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	111890879	111890880	chr5:111890880:T:C	rs74414650	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.970929941639515	0.06217516232429543	TCAAAGGCATTGC
chr5	111916397	111916398	chr5:111916398:A:G	rs1493457	A	G	A	Sox1.mouse_HMG_3	5	1	+	6.19884415700035	4.9661713859332615	TCACTATCACTGA
chr5	111948539	111948540	chr5:111948540:T:C	rs74863307	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr5	112116409	112116410	chr5:112116410:T:A	rs13156777	T	A	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	112717592	112717593	chr5:112717593:G:A	rs56700193	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr5	112717612	112717613	chr5:112717613:G:A	rs184735912	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr5	112779944	112779945	chr5:112779945:A:G	rs77939389	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr5	112831889	112831890	chr5:112831890:T:C	rs548710	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr5	112884915	112884916	chr5:112884916:A:T	rs818428	A	T	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	112893990	112893991	chr5:112893991:T:C	rs519397	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	112910755	112910756	chr5:112910756:C:A	rs17135168	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	112983414	112983415	chr5:112983415:T:A	rs33549	T	A	t	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	113020951	113020952	chr5:113020952:G:A	rs7670	G	A	g	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr5	113063072	113063073	chr5:113063073:C:T	rs10478102	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	113098768	113098769	chr5:113098769:G:A	rs3890775	G	A	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	113203395	113203396	chr5:113203396:T:C	rs57948635	T	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	113203431	113203432	chr5:113203432:G:A	rs10478114	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	113203432	113203433	chr5:113203433:T:C	rs57602920	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr5	113372091	113372092	chr5:113372092:C:T	rs12516418	C	T	C	Sox1.mouse_HMG_3	1	1	+	9.287137657487284	4.328865426373659	ACAATTTCATTGT
chr5	113645830	113645831	chr5:113645831:C:A	rs12189067	C	A	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	113660528	113660529	chr5:113660529:A:T	rs7707681	A	T	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr5	113738852	113738853	chr5:113738853:C:T	rs73250331	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	113813913	113813914	chr5:113813914:C:T	rs12520281	C	T	C	Sox1.mouse_HMG_3	1	1	+	8.18723396893226	3.2289617378186333	CCAATTCCATTGA
chr5	115022172	115022173	chr5:115022173:A:C	rs4705698	A	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr5	115029208	115029209	chr5:115029209:G:A	rs76945126	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	115492053	115492054	chr5:115492054:T:C	rs10463671	T	C	T	Sox1.mouse_HMG_3	8	1	-	9.287137657487284	2.3783828781720646	ACAATTTCATTGT
chr5	115501869	115501870	chr5:115501870:G:A	rs181598906	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	115661792	115661793	chr5:115661793:G:A	rs73782741	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr5	115961242	115961243	chr5:115961243:C:G	rs7704899	C	G	G	Sox1.mouse_HMG_3	6	1	-	5.563376477249927	5.988339074028612	TCACTTGCAATGA
chr5	115961247	115961248	chr5:115961248:G:C	rs12516208	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.563376477249927	-1.3393763101094165	TCACTTGCAATGA
chr5	116256884	116256885	chr5:116256885:C:T	rs10073364	C	T	C	Sox1.mouse_HMG_3	12	1	+	4.787034297796355	4.872811159543058	TCACTGTCATTCC
chr5	116514086	116514087	chr5:116514087:C:T	rs112557435	C	T	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr5	116611427	116611428	chr5:116611428:A:G	rs12521940	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	116626599	116626600	chr5:116626600:A:C	chr5:116626600:A:C	A	C	A	Sox1.mouse_HMG_3	2	1	+	5.988339074028612	-0.9204157052866075	TCACTTCCACTGA
chr5	116626615	116626616	chr5:116626616:C:G	rs116589625	C	G	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	116774096	116774097	chr5:116774097:T:C	rs2913608	T	C	C	Sox1.mouse_HMG_3	12	1	+	6.0158375909427	5.930060729195997	TCAATAGCTTTGT
chr5	116860333	116860334	chr5:116860334:T:C	rs10043907	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	117244698	117244699	chr5:117244699:A:G	rs73783751	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	117364560	117364561	chr5:117364561:G:A	rs10055981	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	117473627	117473628	chr5:117473628:C:A	rs2162748	C	A	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	117667390	117667391	chr5:117667391:G:A	rs1686409	G	A	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	117667401	117667402	chr5:117667402:C:T	rs1686410	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	117953736	117953737	chr5:117953737:G:C	rs10070124	G	C	G	Sox1.mouse_HMG_3	6	1	-	9.89511044223605	9.470147845457364	TCAAAGCCATTGA
chr5	118530070	118530071	chr5:118530071:T:C	rs10478395	T	C	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr5	119271646	119271647	chr5:119271647:A:G	rs7704111	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	119288494	119288495	chr5:119288495:G:A	rs905831	G	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr5	119681212	119681213	chr5:119681213:T:C	rs874886	T	C	T	Sox1.mouse_HMG_3	5	1	-	10.010720555569492	8.778047784502403	ACAATATCATTGT
chr5	119975076	119975077	chr5:119975077:G:A	rs58296627	G	A	G	Sox1.mouse_HMG_3	5	1	+	5.259680759530836	6.492353530597924	TCAATGACCTTGT
chr5	119987128	119987129	chr5:119987129:G:A	rs4540207	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr5	120039464	120039465	chr5:120039465:C:G	rs5002564	C	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	120139209	120139210	chr5:120139210:C:T	rs79866854	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	120227128	120227129	chr5:120227129:C:T	rs12719272	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	120396166	120396167	chr5:120396167:T:C	rs1368190	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	120452578	120452579	chr5:120452579:G:A	rs1432461	G	A	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr5	120891932	120891933	chr5:120891933:T:C	rs75135235	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.566272753469329	-1.320636754331178	TCCATACCATTGG
chr5	121045849	121045850	chr5:121045850:T:G	rs73264497	T	G	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	121106891	121106892	chr5:121106892:G:A	rs73266561	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	122014424	122014425	chr5:122014425:G:A	rs78618428	G	A	G	Sox1.mouse_HMG_3	3	1	-	6.700956327617327	2.0640936948967457	TCACTCACATTGT
chr5	122190391	122190392	chr5:122190392:C:A	rs144914388	C	A	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	122401761	122401762	chr5:122401762:G:A	rs17149137	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	122592115	122592116	chr5:122592116:T:G	rs77575759	T	G	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr5	122907028	122907029	chr5:122907029:C:T	rs112801206	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	122907036	122907037	chr5:122907037:G:T	rs34844238	G	T	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr5	122933759	122933760	chr5:122933760:G:A	rs246312	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.430376535716743	0.7935139029961615	TCACTCCTATTGA
chr5	123045429	123045430	chr5:123045430:G:T	rs780635350	G	T	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	123199837	123199838	chr5:123199838:G:A	rs804722	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	123227248	123227249	chr5:123227249:C:T	rs168113	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr5	123227268	123227269	chr5:123227269:A:G	rs79218795	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.144195826422308	-1.6568313354946984	TCAATGCCACTGC
chr5	123244922	123244923	chr5:123244923:G:A	rs453473	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	123422472	123422473	chr5:123422473:A:T	rs62377766	A	T	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr5	123835647	123835648	chr5:123835648:C:T	rs3909326	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	123873509	123873510	chr5:123873510:A:T	rs116306819	A	T	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	123997861	123997862	chr5:123997862:A:G	rs17489713	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.539430505442008	-1.369324273873211	ACAATACCATTAG
chr5	124065380	124065381	chr5:124065381:C:T	rs7447381	C	T	T	Sox1.mouse_HMG_3	6	1	-	5.228323102628504	5.7048390422837265	TCAATTGCAATGC
chr5	124154931	124154932	chr5:124154932:C:T	rs12108901	C	T	C	Sox1.mouse_HMG_3	6	1	-	12.201009472175713	12.677525411830935	TCAATTGCATTGT
chr5	124154934	124154935	chr5:124154935:T:G	rs1457687	T	G	g	Sox1.mouse_HMG_3	3	1	-	12.201009472175713	10.036844942979288	TCAATTGCATTGT
chr5	124172839	124172840	chr5:124172840:T:C	rs74323401	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.605918458013345	-2.3028363213018745	TCATTTCTATTGA
chr5	124376508	124376509	chr5:124376509:G:C	rs11241737	G	C	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	125255338	125255339	chr5:125255339:C:G	rs12522773	C	G	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr5	125268162	125268163	chr5:125268163:A:T	rs17152529	A	T	A	Sox1.mouse_HMG_3	6	1	-	9.891122500110457	10.455753658097466	TCAATTTCATCGA
chr5	125311846	125311847	chr5:125311847:A:T	rs1550371	A	T	T	Sox1.mouse_HMG_3	4	1	-	3.8205221672917706	-0.814690628512843	TCCATGTCATTGG
chr5	125326160	125326161	chr5:125326161:A:G	rs146365504	A	G	A	Sox1.mouse_HMG_3	8	1	+	7.1337500074388664	0.22499522812364736	ACAATTTCATTCA
chr5	125327821	125327822	chr5:125327822:G:A	rs7714653	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	125659033	125659034	chr5:125659034:A:G	rs12188091	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	125951274	125951275	chr5:125951275:T:C	rs11241848	T	C	A	Sox1.mouse_HMG_3	8	1	-	5.24402255893002	-1.6647322203851989	TCACTGTCATTAC
chr5	126054600	126054601	chr5:126054601:G:A	rs3849066	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	126178471	126178472	chr5:126178472:G:A	rs75935139	G	A	G	Sox1.mouse_HMG_3	5	1	-	6.078717945093276	9.891122500110459	TCAAACTCATTGA
chr5	126326799	126326800	chr5:126326800:G:A	rs62391831	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr5	126342138	126342139	chr5:126342139:A:T	rs77593349	A	T	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	126353271	126353272	chr5:126353272:G:A	rs77820934	G	A	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	126374216	126374217	chr5:126374217:T:C	rs10078989	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr5	126437922	126437923	chr5:126437923:A:G	rs183737645	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	126462580	126462581	chr5:126462581:A:G	rs6862440	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	126481530	126481531	chr5:126481531:T:G	rs78788073	T	G	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	126516419	126516420	chr5:126516420:C:A	rs114776225	C	A	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	126554866	126554867	chr5:126554867:C:T	rs12513847	C	T	t	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr5	126776448	126776449	chr5:126776449:G:A	rs60147760	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	126776460	126776461	chr5:126776461:C:A	rs2036844	C	A	A	Sox1.mouse_HMG_3	3	1	+	5.462074745104003	7.626239274300426	TCACTTTCATGGA
chr5	126776476	126776477	chr5:126776477:T:C	rs116519295	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr5	126868935	126868936	chr5:126868936:A:G	rs56163512	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr5	126868974	126868975	chr5:126868975:C:A	rs79665108	C	A	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	126951581	126951582	chr5:126951582:G:A	rs10491284	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr5	127029008	127029009	chr5:127029009:T:A	rs7709865	T	A	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr5	127193156	127193157	chr5:127193157:G:T	rs193712	G	T	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	127393004	127393005	chr5:127393005:G:T	rs1529467	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	127556881	127556882	chr5:127556882:C:A	rs449278	C	A	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	127888740	127888741	chr5:127888741:C:T	rs245172	C	T	c	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr5	128062386	128062387	chr5:128062387:C:G	rs755090899	C	G	C	Sox1.mouse_HMG_3	5	1	-	3.9172961433241293	0.6139814612918246	TCAACGGCATTGG
chr5	128085547	128085548	chr5:128085548:A:G	rs770750751	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.955092822643554	-1.9318166851569543	ACAGTGACATTGA
chr5	128499618	128499619	chr5:128499619:C:T	rs4836376	C	T	T	Sox1.mouse_HMG_3	6	1	+	5.221773738697339	4.708695923586868	TCAATACTGTTGA
chr5	128560025	128560026	chr5:128560026:T:C	rs73348080	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.292254692860492	-1.594654814940015	TCTATTGCATTGT
chr5	128597263	128597264	chr5:128597264:A:C	rs34912177	A	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	128632246	128632247	chr5:128632247:C:T	rs4587123	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	128951534	128951535	chr5:128951535:C:T	rs1898544	C	T	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr5	128962743	128962744	chr5:128962744:G:T	rs6888634	G	T	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	129853248	129853249	chr5:129853249:T:A	rs77129189	T	A	T	Sox1.mouse_HMG_3	9	1	+	7.546869065084483	0.6599595572839758	TCAATAATATCGA
chr5	130539867	130539868	chr5:130539868:C:T	rs11242027	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	131583451	131583452	chr5:131583452:G:C	chr5:131583452:G:C	G	C	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr5	131654690	131654691	chr5:131654691:T:C	rs26003	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr5	132387133	132387134	chr5:132387134:A:G	rs77300588	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr5	132945273	132945274	chr5:132945274:C:T	rs4705874	C	T	N	Sox1.mouse_HMG_3	11	1	-	5.9664938025139005	1.8566533715280018	TCGCTTCCATTGA
chr5	133055059	133055060	chr5:133055060:G:T	rs6874265	G	T	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	133203790	133203791	chr5:133203791:T:C	rs4533941	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	133423631	133423632	chr5:133423632:C:T	rs29545	C	T	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	133429264	133429265	chr5:133429265:C:T	rs72787310	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	133449884	133449885	chr5:133449885:T:C	rs25872	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.5068495983157035	-2.4019051809995164	TCAATTCTATAGA
chr5	133738989	133738990	chr5:133738990:A:T	rs55810542	A	T	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr5	133817126	133817127	chr5:133817127:G:T	rs59407636	G	T	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	133817149	133817150	chr5:133817150:A:G	rs114109552	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.829340048662781	-0.07941473065243998	TCACTTCTATTGT
chr5	133994239	133994240	chr5:133994240:C:T	rs10078324	C	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	134169183	134169184	chr5:134169184:T:C	rs2284312	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.300913450561065	-1.50011371135594	TCAAGTGCATTGT
chr5	134175570	134175571	chr5:134175571:T:C	rs73791516	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.300913450561065	-1.50011371135594	TCAACTGCATTGT
chr5	134284512	134284513	chr5:134284513:T:C	rs326610	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.281526031045548	-1.5195011308714583	TCAATGACACTGT
chr5	134777762	134777763	chr5:134777763:C:G	rs139332323	C	G	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	134925139	134925140	chr5:134925140:G:A	rs5013057	G	A	-	Sox1.mouse_HMG_3	1	1	-	9.540544391801966	4.582272160688341	TCACTAACATTAA
chr5	134965319	134965320	chr5:134965320:A:T	rs62380036	A	T	a	Sox1.mouse_HMG_3	9	1	-	5.0384433247062095	-1.8484661830942977	TAACTGGCATTGA
chr5	135067538	135067539	chr5:135067539:T:C	rs7737968	T	C	C	Sox1.mouse_HMG_3	10	1	+	11.151166918970015	6.515954123165402	TCACTAACATTGC
chr5	135404008	135404009	chr5:135404009:C:A	rs139392213	C	A	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr5	135454898	135454899	chr5:135454899:G:A	rs6866573	G	A	G	Sox1.mouse_HMG_3	12	1	-	4.717000357195339	4.802777218942042	TCATTGTCATTGC
chr5	135633271	135633272	chr5:135633272:G:C	rs31263	G	C	G	Sox1.mouse_HMG_3	5	1	+	5.283281352098314	1.9799666700660103	TCACAGACATTGC
chr5	135636474	135636475	chr5:135636475:G:A	rs112800818	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr5	135693704	135693705	chr5:135693705:T:C	rs4246783	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr5	135837498	135837499	chr5:135837499:A:C	rs6890039	A	C	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr5	136135949	136135950	chr5:136135950:C:A	rs11959595	C	A	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	136135961	136135962	chr5:136135962:G:A	rs11959648	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	136458162	136458163	chr5:136458163:A:G	rs76317867	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	136605972	136605973	chr5:136605973:G:A	rs35755198	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	137273912	137273913	chr5:137273913:T:C	rs17171273	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	137510018	137510019	chr5:137510019:C:T	rs6879168	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr5	137978779	137978780	chr5:137978780:T:C	rs17523263	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr5	138101535	138101536	chr5:138101536:A:G	rs4835767	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	139482477	139482478	chr5:139482478:G:T	rs117579783	G	T	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	139815574	139815575	chr5:139815575:T:C	rs17118443	T	C	C	Sox1.mouse_HMG_3	0	1	+	3.8291809249923436	-3.022998217100941	TCAAGGTCATTGG
chr5	139915848	139915849	chr5:139915849:C:T	rs990211524	C	T	C	Sox1.mouse_HMG_3	5	1	-	4.717000357195339	5.949673128262427	TCAGTGTCATTGC
chr5	140073307	140073308	chr5:140073308:G:A	rs187178000	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.2041394745287075	1.5716719834335149	TCTATTTCATTGT
chr5	140238499	140238500	chr5:140238500:C:T	rs2009997	C	T	c	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr5	140565134	140565135	chr5:140565135:C:G	rs114317763	C	G	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	140604115	140604116	chr5:140604116:T:C	rs778606	T	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr5	140647753	140647754	chr5:140647754:C:A	chr5:140647754:C:A	C	A	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	140970254	140970255	chr5:140970255:A:G	rs155806	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.22768719168849	-2.6592223161120168	TCAAAACCATAGA
chr5	141245638	141245639	chr5:141245639:C:T	rs35154204	C	T	c	Sox1.mouse_HMG_3	9	1	-	4.997333113730688	1.8784986430427137	TCACTTCCAGTAA
chr5	141475628	141475629	chr5:141475629:C:T	rs77593456	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	141490031	141490032	chr5:141490032:C:T	rs2233602	C	T	C	Sox1.mouse_HMG_3	1	1	+	7.643413730240157	2.68514149912653	TCAATGCCACTGA
chr5	141826276	141826277	chr5:141826277:G:C	rs72794063	G	C	G	Sox1.mouse_HMG_3	11	1	-	7.1337500074388664	11.700578699558429	ACAATTTCATTCA
chr5	141826295	141826296	chr5:141826296:C:T	rs17705472	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	141870936	141870937	chr5:141870937:T:G	rs79970685	T	G	T	Sox1.mouse_HMG_3	10	1	+	4.340099048207852	-2.5599969734067956	TCAATCCCACTGA
chr5	142016759	142016760	chr5:142016760:T:A	rs73792251	T	A	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	142057090	142057091	chr5:142057091:G:C	rs34143804	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr5	142063804	142063805	chr5:142063805:G:T	rs146473853	G	T	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	142322724	142322725	chr5:142322725:C:T	rs1176269291	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	142471756	142471757	chr5:142471757:A:T	rs78864562	A	T	A	Sox1.mouse_HMG_3	0	1	-	9.891122500110459	7.065365903753818	TCAAATTCATTGA
chr5	142676768	142676769	chr5:142676769:G:A	rs80209529	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	142693239	142693240	chr5:142693240:C:T	rs11949820	C	T	c	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr5	142883209	142883210	chr5:142883210:C:G	rs73799021	C	G	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr5	143019291	143019292	chr5:143019292:A:C	rs3776362	A	C	A	Sox1.mouse_HMG_3	2	1	+	6.18464262966056	-0.7241121496546599	TCACTGCCAGTGT
chr5	143121187	143121188	chr5:143121188:G:A	rs41290619	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	143151618	143151619	chr5:143151619:T:C	rs114190454	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	143230355	143230356	chr5:143230356:G:T	rs199817482	G	T	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	143437069	143437070	chr5:143437070:G:C	rs61757416	G	C	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr5	143496911	143496912	chr5:143496912:G:A	rs2028833	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	143645946	143645947	chr5:143645947:T:A	rs10068655	T	A	A	Sox1.mouse_HMG_3	6	1	-	8.914453330369643	8.349822172382634	TCAAGAACATTGA
chr5	143862503	143862504	chr5:143862504:C:G	rs161553	C	G	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	143898579	143898580	chr5:143898580:C:T	rs139259905	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	144645502	144645503	chr5:144645503:T:G	rs185438	T	G	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	144941112	144941113	chr5:144941113:T:G	rs6863541	T	G	G	Sox1.mouse_HMG_3	9	1	+	5.9664938025139005	2.1984187654013665	TCTCTTCCATTGA
chr5	145239374	145239375	chr5:145239375:T:C	rs17096539	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	145245515	145245516	chr5:145245516:T:C	rs13169495	T	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	145636315	145636316	chr5:145636316:G:A	rs73313748	G	A	a	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	145830634	145830635	chr5:145830635:C:T	rs620323	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr5	145860035	145860036	chr5:145860036:C:T	rs140843458	C	T	C	Sox1.mouse_HMG_3	12	1	-	4.562914883278012	7.850883359601214	TCACTGACATTCG
chr5	145860050	145860051	chr5:145860051:G:A	rs111492361	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr5	146188800	146188801	chr5:146188801:T:A	rs17104298	T	A	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	146542706	146542707	chr5:146542707:T:C	rs75656298	T	C	T	Sox1.mouse_HMG_3	12	1	+	5.933724364566791	5.847947502820089	TAAATATCATTGT
chr5	146657473	146657474	chr5:146657474:C:T	rs462664	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	146699430	146699431	chr5:146699431:C:T	rs141492627	C	T	T	Sox1.mouse_HMG_3	3	1	+	5.533409654113418	0.8965470213928364	TCACTGACATTTA
chr5	146778316	146778317	chr5:146778317:A:T	rs161030	A	T	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr5	146824311	146824312	chr5:146824312:T:C	rs73793291	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	147482665	147482666	chr5:147482666:A:C	rs958677	A	C	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	147643279	147643280	chr5:147643280:T:A	rs9918176	T	A	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	147780867	147780868	chr5:147780868:G:A	rs12655202	G	A	G	Sox1.mouse_HMG_3	1	1	-	10.010720555569492	5.052448324455865	ACAATATCATTGT
chr5	147857650	147857651	chr5:147857651:T:C	rs150243556	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr5	147901955	147901956	chr5:147901956:T:G	rs75136579	T	G	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr5	148098625	148098626	chr5:148098626:T:G	rs12657460	T	G	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr5	148826996	148826997	chr5:148826997:A:C	chr5:148826997:A:C	A	C	A	Sox1.mouse_HMG_3	2	1	+	5.2317280092217775	-1.6770267700934427	TCACAGCCATTGC
chr5	148955679	148955680	chr5:148955680:T:C	rs4705298	T	C	T	Sox1.mouse_HMG_3	6	1	-	7.525833067481464	7.049317127826244	TCAATGACAGTGG
chr5	149203069	149203070	chr5:149203070:A:C	rs6880899	A	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	149216567	149216568	chr5:149216568:T:C	rs2963494	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	149232377	149232378	chr5:149232378:G:C	rs1011400	G	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	149320290	149320291	chr5:149320291:A:C	rs540186380	A	C	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	149404925	149404926	chr5:149404926:C:T	rs376762382	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	149732631	149732632	chr5:149732632:T:A	rs1076063	T	A	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	149886311	149886312	chr5:149886312:G:A	rs61733360	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	149916615	149916616	chr5:149916616:T:A	rs140562958	T	A	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr5	149956942	149956943	chr5:149956943:T:C	rs245058	T	C	C	Sox1.mouse_HMG_3	4	1	+	4.766246070321347	-2.1338499512933016	TCAATACCAATAA
chr5	149994452	149994453	chr5:149994453:A:G	rs10036377	A	G	A	Sox1.mouse_HMG_3	0	1	-	4.018014839937738	-2.8341643021555463	TCACAGGCATTGG
chr5	149994455	149994456	chr5:149994456:C:T	rs10041944	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr5	150084309	150084310	chr5:150084310:A:G	rs10043508	A	G	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	150216488	150216489	chr5:150216489:G:T	rs6891450	G	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr5	150407437	150407438	chr5:150407438:C:T	chr5:150407438:C:T	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	150505068	150505069	chr5:150505069:C:T	rs115812670	C	T	c	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr5	150610488	150610489	chr5:150610489:C:T	rs957243781	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	151005119	151005120	chr5:151005120:A:G	rs76250114	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	151191594	151191595	chr5:151191595:G:A	rs248438	G	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr5	151214526	151214527	chr5:151214527:T:C	rs116434838	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.836823354126688	-0.9642038077903163	TCAATGACATCAA
chr5	151214633	151214634	chr5:151214634:T:C	rs12521757	T	C	C	Sox1.mouse_HMG_3	3	1	-	5.164836826205052	-1.6361903357119532	ACAATCACATTGG
chr5	151283921	151283922	chr5:151283922:C:T	rs114946340	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	151452427	151452428	chr5:151452428:A:G	rs918421	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr5	151523598	151523599	chr5:151523599:G:A	rs376564132	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr5	151704347	151704348	chr5:151704348:T:C	rs9324708	T	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	152168711	152168712	chr5:152168712:G:C	rs1946486	G	C	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	152475405	152475406	chr5:152475406:A:G	rs28495602	A	G	G	Sox1.mouse_HMG_3	3	1	+	8.45112390452856	1.6500967426115534	TCAATAGCACTGA
chr5	152534900	152534901	chr5:152534901:T:C	rs17549307	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.477439674520019	-1.4313151047952015	TCACTTCCATTAG
chr5	152579864	152579865	chr5:152579865:A:C	rs2961769	A	C	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	153524002	153524003	chr5:153524003:A:G	rs572798	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	153560102	153560103	chr5:153560103:C:A	rs72800788	C	A	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr5	153628477	153628478	chr5:153628478:C:T	rs74680387	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr5	153714110	153714111	chr5:153714111:G:C	rs34212051	G	C	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr5	153781438	153781439	chr5:153781439:A:G	rs2964025	A	G	G	Sox1.mouse_HMG_3	2	1	+	6.318600590137393	-0.590154189177827	TCACTTGTATTGC
chr5	154039781	154039782	chr5:154039782:C:T	rs2560062	C	T	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr5	154218363	154218364	chr5:154218364:G:A	rs4958715	G	A	A	Sox1.mouse_HMG_3	11	1	+	11.569958375216531	7.460117944230634	TCAATAGCAGTGA
chr5	154234652	154234653	chr5:154234653:T:C	rs6880803	T	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr5	154243207	154243208	chr5:154243208:T:G	rs2122895	T	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	154258658	154258659	chr5:154258659:A:G	rs520843	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	154332331	154332332	chr5:154332332:G:A	rs6580073	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr5	154644995	154644996	chr5:154644996:C:T	rs68119351	C	T	C	Sox1.mouse_HMG_3	6	1	-	5.625367308171917	6.101883247827141	ACAATAGCACTGA
chr5	155154859	155154860	chr5:155154860:T:C	rs7716693	T	C	t	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr5	155475441	155475442	chr5:155475442:G:T	rs1148123	G	T	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr5	155475455	155475456	chr5:155475456:G:T	rs267014	G	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	155514608	155514609	chr5:155514609:A:G	rs1295242	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	155576052	155576053	chr5:155576053:G:A	rs991395	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	155655559	155655560	chr5:155655560:T:C	rs79763640	T	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr5	155665802	155665803	chr5:155665803:A:G	rs17118190	A	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	156328243	156328244	chr5:156328244:G:A	rs74755325	G	A	G	Sox1.mouse_HMG_3	5	1	+	8.6922709227557	9.924943693822788	ACAATGTCATTGC
chr5	156434390	156434391	chr5:156434391:A:G	rs62382689	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.185657643186209	-0.7012518646142982	TCACCATCATTGA
chr5	156590074	156590075	chr5:156590075:A:G	rs3797574	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	156590078	156590079	chr5:156590079:A:G	rs157292	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr5	156801147	156801148	chr5:156801148:A:C	rs1029481076	A	C	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	156932530	156932531	chr5:156932531:C:T	rs10079117	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	157195233	157195234	chr5:157195234:C:T	rs163428	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr5	157216388	157216389	chr5:157216389:A:G	rs152113	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.037143391136462	-0.8497661166640458	ACAACACCATTGA
chr5	157567022	157567023	chr5:157567023:C:T	rs11465254	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr5	157675114	157675115	chr5:157675115:C:T	rs142164982	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	157718397	157718398	chr5:157718398:C:T	rs10053680	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr5	157780493	157780494	chr5:157780494:T:C	rs254680	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr5	157890923	157890924	chr5:157890924:A:G	rs11738052	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.001970815661874	-1.8849386921386337	TCATTTACATTGG
chr5	158087009	158087010	chr5:158087010:G:A	rs13436874	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr5	158087035	158087036	chr5:158087036:C:T	rs1650590	C	T	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	158215927	158215928	chr5:158215928:A:G	rs115783907	A	G	A	Sox1.mouse_HMG_3	4	1	-	6.330760736788745	-0.5693352848259028	ACAATAGCAGTGT
chr5	158415730	158415731	chr5:158415731:C:T	rs72804565	C	T	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	158573826	158573827	chr5:158573827:T:C	rs1428443	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr5	158769397	158769398	chr5:158769398:A:T	rs151043338	A	T	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr5	158820529	158820530	chr5:158820530:G:A	rs146680595	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	159049700	159049701	chr5:159049701:T:C	rs17645325	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr5	159061697	159061698	chr5:159061698:C:T	chr5:159061698:C:T	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	159084325	159084326	chr5:159084326:G:A	rs13362288	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.215136588814364	5.300913450561065	TCAACTGCATTGC
chr5	159286663	159286664	chr5:159286664:G:A	rs111764671	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr5	159417223	159417224	chr5:159417224:G:A	rs58368531	G	A	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr5	159517076	159517077	chr5:159517077:A:G	rs11959014	A	G	A	Sox1.mouse_HMG_3	8	1	+	8.411187184360076	1.5024324050448556	ACACTAACATTGT
chr5	160309021	160309022	chr5:160309022:G:A	rs79101558	G	A	g	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr5	160309036	160309037	chr5:160309037:A:G	rs12659739	A	G	g	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr5	160330488	160330489	chr5:160330489:T:C	rs72814332	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr5	160398895	160398896	chr5:160398896:G:T	rs141941019	G	T	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	160540236	160540237	chr5:160540237:G:A	rs12187077	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr5	160746122	160746123	chr5:160746123:A:G	rs7737399	A	G	G	Sox1.mouse_HMG_3	6	1	+	4.44669349794772	3.9701775582924976	TCAGTAACATTCA
chr5	161286378	161286379	chr5:161286379:A:C	rs153295	A	C	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	161287455	161287456	chr5:161287456:C:T	rs17059223	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	161287483	161287484	chr5:161287484:G:A	rs252951	G	A	A	Sox1.mouse_HMG_3	1	1	-	4.385153325278779	-0.5731189058348478	TCAATGACTTTGG
chr5	162096716	162096717	chr5:162096717:A:G	rs2910223	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	162128616	162128617	chr5:162128617:C:G	rs78148330	C	G	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr5	162260963	162260964	chr5:162260964:A:G	rs28737424	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.0776473200667205	-1.7233798418502864	TCAATATCATTTG
chr5	162313023	162313024	chr5:162313024:A:G	rs150423568	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	163347812	163347813	chr5:163347813:T:C	rs1037931872	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	163379818	163379819	chr5:163379819:G:T	rs10746556	G	T	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr5	163637005	163637006	chr5:163637006:G:A	rs10072788	G	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr5	163705632	163705633	chr5:163705633:T:C	rs693308	T	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	163846624	163846625	chr5:163846625:A:G	rs6881878	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	163861943	163861944	chr5:163861944:A:T	rs138742827	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	164615273	164615274	chr5:164615274:T:C	rs1366190	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr5	165360856	165360857	chr5:165360857:G:A	rs55641890	G	A	G	Sox1.mouse_HMG_3	10	1	-	5.07922581504644	9.714438610851053	ACAATTCCATCGC
chr5	165466739	165466740	chr5:165466740:T:C	rs3899980	T	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	165808377	165808378	chr5:165808378:G:A	chr5:165808378:G:A	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr5	165881401	165881402	chr5:165881402:A:G	rs26435	A	G	a	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	165881409	165881410	chr5:165881410:C:T	rs150922313	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	165996948	165996949	chr5:165996949:C:T	rs62383292	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	166085745	166085746	chr5:166085746:A:C	rs6880735	A	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	166371315	166371316	chr5:166371316:G:A	rs17066756	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr5	166793125	166793126	chr5:166793126:C:T	rs1368398	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr5	166882001	166882002	chr5:166882002:C:A	rs2161425	C	A	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr5	167454171	167454172	chr5:167454172:T:C	rs1030669	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr5	168147616	168147617	chr5:168147617:G:C	rs10077866	G	C	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	168360808	168360809	chr5:168360809:A:C	rs77508953	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr5	168362430	168362431	chr5:168362431:C:G	rs10065566	C	G	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr5	168459825	168459826	chr5:168459826:C:G	rs2337212	C	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	168459839	168459840	chr5:168459840:T:C	rs642448	T	C	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr5	168598319	168598320	chr5:168598320:C:T	rs158575	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	168758966	168758967	chr5:168758967:T:C	rs2337554	T	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr5	168813132	168813133	chr5:168813133:A:G	rs58655552	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	168820969	168820970	chr5:168820970:C:A	rs11134534	C	A	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	168845021	168845022	chr5:168845022:A:G	rs143773034	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr5	168988781	168988782	chr5:168988782:C:A	rs113348765	C	A	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr5	169083446	169083447	chr5:169083447:C:A	rs2668063	C	A	c	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	169088447	169088448	chr5:169088448:A:G	rs2221839	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr5	169182685	169182686	chr5:169182686:C:T	rs12653232	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr5	169416344	169416345	chr5:169416345:A:G	rs929757	A	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr5	169701961	169701962	chr5:169701962:T:A	rs2161404	T	A	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	169809471	169809472	chr5:169809472:T:C	rs9885351	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.973366515088131	1.0864570072876245	TCAATTCCATTCC
chr5	170058810	170058811	chr5:170058811:G:A	rs7727916	G	A	g	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr5	170085773	170085774	chr5:170085774:A:T	rs141460936	A	T	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	170176777	170176778	chr5:170176778:A:G	rs10065762	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr5	170328064	170328065	chr5:170328065:C:T	rs315781	C	T	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr5	170328105	170328106	chr5:170328106:C:T	rs13170456	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	170541218	170541219	chr5:170541219:C:A	rs13170586	C	A	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	170654250	170654251	chr5:170654251:G:A	rs9313516	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr5	170750238	170750239	chr5:170750239:A:T	rs147768444	A	T	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr5	171394777	171394778	chr5:171394778:T:C	rs59975074	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.812932489095877	-1.0739770187046305	TTAATAGCATTCA
chr5	171495525	171495526	chr5:171495526:G:T	rs1349494697	G	T	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr5	171664541	171664542	chr5:171664542:T:C	rs254924	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	171689548	171689549	chr5:171689549:T:A	rs62381885	T	A	T	Sox1.mouse_HMG_3	0	1	+	4.903681759081386	2.0779251627247435	TCAGTAACATTAA
chr5	172104254	172104255	chr5:172104255:T:A	rs11955888	T	A	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr5	172104255	172104256	chr5:172104256:C:T	rs11952459	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr5	172156742	172156743	chr5:172156743:C:T	chr5:172156743:C:T	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.385153325278779	-0.5731189058348478	TCAATGACTTTGG
chr5	172185244	172185245	chr5:172185245:A:G	rs72845183	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr5	172338074	172338075	chr5:172338075:G:T	rs76956436	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr5	172420704	172420705	chr5:172420705:T:C	rs111920335	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr5	172420706	172420707	chr5:172420707:C:T	rs73804835	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr5	172692715	172692716	chr5:172692716:T:C	rs7733395	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	172805762	172805763	chr5:172805763:G:A	rs922477	G	A	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr5	172844642	172844643	chr5:172844643:G:A	rs1022350189	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	173248030	173248031	chr5:173248031:A:G	rs62378332	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	173452295	173452296	chr5:173452296:C:T	rs559655191	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr5	173452313	173452314	chr5:173452314:A:G	rs28416555	A	G	A	Sox1.mouse_HMG_3	9	1	-	7.729296076123658	0.8423865683231504	TCAGTGCCATTGA
chr5	173452335	173452336	chr5:173452336:C:T	rs149069520	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	173522062	173522063	chr5:173522063:G:C	rs4868283	G	C	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr5	173572523	173572524	chr5:173572524:T:C	rs7703857	T	C	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr5	173633567	173633568	chr5:173633568:C:T	rs60845421	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr5	173659866	173659867	chr5:173659867:G:A	rs17688826	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr5	174178005	174178006	chr5:174178006:A:G	rs62393850	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr5	174551440	174551441	chr5:174551441:A:G	rs11739925	A	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	174565611	174565612	chr5:174565612:A:T	rs1490042	A	T	A	Sox1.mouse_HMG_3	3	1	+	12.112894253843926	5.311867091926922	TCAATTTCATTGT
chr5	174573050	174573051	chr5:174573051:G:A	rs72822738	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr5	174972894	174972895	chr5:174972895:C:T	rs11134893	C	T	c	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr5	175352099	175352100	chr5:175352100:G:A	rs860676	G	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr5	175352105	175352106	chr5:175352106:T:A	rs56067739	T	A	T	Sox1.mouse_HMG_3	4	1	+	4.795811862368801	0.16059906656418677	ACCATGCCATTGA
chr5	175411276	175411277	chr5:175411277:A:G	rs10476155	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr5	175457448	175457449	chr5:175457449:A:G	rs141169879	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr5	175922993	175922994	chr5:175922994:C:T	rs113166697	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr5	176959439	176959440	chr5:176959440:G:A	rs150760221	G	A	-	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	177025284	177025285	chr5:177025285:C:T	rs1323406904	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr5	177137187	177137188	chr5:177137188:G:A	rs1052432	G	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	177345025	177345026	chr5:177345026:C:G	rs6891305	C	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr5	177440480	177440481	chr5:177440481:G:A	rs549353097	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr5	177841477	177841478	chr5:177841478:G:A	rs68047133	G	A	g	Sox1.mouse_HMG_3	9	1	+	4.685655977609173	1.5668215069211997	TCAATAGCAGTTA
chr5	177971815	177971816	chr5:177971816:T:C	rs56207434	T	C	.	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr5	178177133	178177134	chr5:178177134:T:C	rs7448252	T	C	T	Sox1.mouse_HMG_3	2	1	-	6.807276676443969	-0.10147810287125303	ACAATAACAGTGT
chr5	178177825	178177826	chr5:178177826:C:T	rs72648829	C	T	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	178186834	178186835	chr5:178186835:C:T	rs2961664	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr5	178195282	178195283	chr5:178195283:G:C	rs2913814	G	C	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr5	178350111	178350112	chr5:178350112:C:G	rs6862908	C	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr5	178467891	178467892	chr5:178467892:C:T	rs1171485519	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr5	178467902	178467903	chr5:178467903:G:C	rs1546222	G	C	G	Sox1.mouse_HMG_3	3	1	-	6.273772861517996	1.6369102287974135	TCACTAGCATGGA
chr5	178740495	178740496	chr5:178740496:A:T	rs13167549	A	T	a	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr5	178790551	178790552	chr5:178790552:C:T	rs6600954	C	T	c	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr5	178899517	178899518	chr5:178899518:G:T	rs76797775	G	T	g	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr5	179187691	179187692	chr5:179187692:G:A	rs252070	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr5	179336722	179336723	chr5:179336723:G:A	rs76653143	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr5	179415928	179415929	chr5:179415929:T:C	rs11743636	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.520036112129844	-2.2809910497871617	TCAATTCTACTGA
chr5	179435715	179435716	chr5:179435716:G:A	rs11741502	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr5	180034973	180034974	chr5:180034974:G:C	rs62405019	G	C	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr5	180168859	180168860	chr5:180168860:G:C	rs57606278	G	C	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr5	180181359	180181360	chr5:180181360:T:C	rs11749727	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr5	180243527	180243528	chr5:180243528:C:T	rs7445806	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr5	180587615	180587616	chr5:180587616:A:G	rs13186854	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr5	181061942	181061943	chr5:181061943:C:T	rs12659188	C	T	t	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr5	181061966	181061967	chr5:181061967:A:T	rs72819860	A	T	a	Sox1.mouse_HMG_3	4	1	-	4.014424218803629	-0.6207885770009842	TCACTGACAGCGA
chr6	229317	229318	chr6:229318:A:G	rs12213088	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr6	250099	250100	chr6:250100:G:A	rs13216889	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	375758	375759	chr6:375759:T:C	rs7753579	T	C	.	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	452727	452728	chr6:452728:A:G	rs870080	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.950417472785336	-1.9364920350151713	TCAGTTCCATTGG
chr6	452731	452732	chr6:452732:A:G	rs55776749	A	G	G	Sox1.mouse_HMG_3	5	1	-	4.950417472785336	1.1380129177681515	TCAGTTCCATTGG
chr6	453441	453442	chr6:453442:A:G	rs9503879	A	G	A	Sox1.mouse_HMG_3	0	1	+	5.604598179865155	1.5781756341285131	ACAATTCCATTAC
chr6	652276	652277	chr6:652277:C:T	rs148952726	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	711029	711030	chr6:711030:C:T	rs886633009	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	711054	711055	chr6:711055:C:G	rs2788220	C	G	C	Sox1.mouse_HMG_3	6	1	+	5.819205068393384	5.3942424716146995	TCACTTCCAGTGG
chr6	733741	733742	chr6:733742:A:G	rs12528257	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.437339657674865	-2.449569850125642	TCAGTTTCATTGG
chr6	764878	764879	chr6:764879:G:A	rs74326681	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	1025007	1025008	chr6:1025008:T:G	rs845878	T	G	t	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	1025034	1025035	chr6:1025035:T:C	rs142694053	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	1028325	1028326	chr6:1028326:A:G	rs1737688	A	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	1414449	1414450	chr6:1414450:G:A	rs7742720	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr6	2080817	2080818	chr6:2080818:G:T	rs192765591	G	T	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	2246814	2246815	chr6:2246815:G:A	rs12198593	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	2429338	2429339	chr6:2429339:T:C	rs13196905	T	C	C	Sox1.mouse_HMG_3	4	1	-	6.970929941639515	4.706046715829483	TCAAAGGCATTGC
chr6	2626965	2626966	chr6:2626966:A:G	rs9378721	A	G	A	Sox1.mouse_HMG_3	12	1	+	4.368585286553667	1.0806168102304645	TGAATTCCAGTGA
chr6	2630232	2630233	chr6:2630233:A:T	rs9503236	A	T	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	2631730	2631731	chr6:2631731:C:T	rs6920352	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	2719314	2719315	chr6:2719315:A:G	rs58421728	A	G	A	Sox1.mouse_HMG_3	1	1	-	7.516755301670923	12.47502753278455	TTAATACCATTGG
chr6	2734119	2734120	chr6:2734120:T:C	rs140905415	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.361025317930558	-0.4400018439864455	TGAATACCATTGC
chr6	2877669	2877670	chr6:2877670:G:A	rs7745181	G	A	A	Sox1.mouse_HMG_3	0	1	+	4.419158931819727	8.445581477556368	GCAATTCCAGTGA
chr6	3061573	3061574	chr6:3061574:G:A	rs73353536	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	3160241	3160242	chr6:3160242:T:C	rs561795454	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	3305219	3305220	chr6:3305220:C:T	rs12206382	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.691652528469586	2.059185037374393	TCAAGTACATTGC
chr6	3367993	3367994	chr6:3367994:C:T	rs979306	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr6	3686184	3686185	chr6:3686185:G:T	rs7749290	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	3696816	3696817	chr6:3696817:T:C	rs62392375	T	C	T	Sox1.mouse_HMG_3	2	1	-	8.45112390452856	1.542369125213339	TCAATAGCACTGA
chr6	3766647	3766648	chr6:3766648:G:T	rs62392418	G	T	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	3892773	3892774	chr6:3892774:T:G	rs79269974	T	G	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr6	3955925	3955926	chr6:3955926:A:G	rs11755366	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.187765593710642	-0.6991439140898661	ACAGTAACATTGA
chr6	4141337	4141338	chr6:4141338:A:T	rs9392552	A	T	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr6	4264304	4264305	chr6:4264305:C:A	rs7753647	C	A	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	4319955	4319956	chr6:4319956:G:A	rs2326477	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr6	4319973	4319974	chr6:4319974:T:G	rs76432767	T	G	T	Sox1.mouse_HMG_3	2	1	-	6.636125278108398	-0.2726295012068227	TCAAATCCAGTGA
chr6	4537464	4537465	chr6:4537465:A:G	rs72817657	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	4581493	4581494	chr6:4581494:T:C	rs11962707	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.310903727309556	-1.5760057804909509	AAAATTCCATTGA
chr6	4637959	4637960	chr6:4637960:T:C	rs1625965	T	C	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	4637988	4637989	chr6:4637989:G:C	rs115820310	G	C	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	4663431	4663432	chr6:4663432:A:C	rs392870	A	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	5059664	5059665	chr6:5059665:C:A	chr6:5059665:C:A	C	A	c	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	5098409	5098410	chr6:5098410:C:T	rs389707	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	5098419	5098420	chr6:5098420:C:T	rs389691	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	5280025	5280026	chr6:5280026:C:T	rs34817446	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	5290213	5290214	chr6:5290214:G:A	rs79583955	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	5317384	5317385	chr6:5317385:A:G	rs6907498	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.908076900706774	-1.0006778786084456	TCACTAATATTAA
chr6	5319198	5319199	chr6:5319199:A:G	rs2753250	A	G	G	Sox1.mouse_HMG_3	8	1	+	7.331538538980945	0.4227837596657251	TCACTACCAGTGC
chr6	5454983	5454984	chr6:5454984:A:C	rs115387213	A	C	A	Sox1.mouse_HMG_3	9	1	-	10.472036149931302	6.703961112818769	TCAATGACATTAA
chr6	5593846	5593847	chr6:5593847:A:G	rs9405853	A	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	5707979	5707980	chr6:5707980:G:A	rs6939091	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	5725997	5725998	chr6:5725998:A:C	rs17292578	A	C	A	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr6	5816942	5816943	chr6:5816943:G:A	rs6597165	G	A	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr6	5853510	5853511	chr6:5853511:C:T	rs75991116	C	T	C	Sox1.mouse_HMG_3	6	1	-	6.321689741039357	6.798205680694581	CCACTAGCATTGA
chr6	5853512	5853513	chr6:5853513:A:G	rs796514270	A	G	A	Sox1.mouse_HMG_3	4	1	-	6.321689741039357	-0.5784062805752901	CCACTAGCATTGA
chr6	6244274	6244275	chr6:6244275:A:G	rs1674059	A	G	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	6260195	6260196	chr6:6260196:A:T	rs2815815	A	T	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	6554817	6554818	chr6:6554818:C:T	rs623810	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.298480930039673	0.6660134389444805	TCACTACCACTGT
chr6	6599352	6599353	chr6:6599353:G:C	rs115740248	G	C	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr6	6599354	6599355	chr6:6599355:A:G	rs3789765	A	G	g	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	6662705	6662706	chr6:6662706:A:G	rs201011	A	G	G	Sox1.mouse_HMG_3	2	1	+	3.734356618889724	-3.174398160425497	CCACTATCATTGC
chr6	6691908	6691909	chr6:6691909:T:C	rs115560	T	C	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	6914396	6914397	chr6:6914397:T:C	rs9392843	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr6	6958872	6958873	chr6:6958873:G:C	rs1886883	G	C	g	Sox1.mouse_HMG_3	7	1	-	6.024049137346314	-0.8556872531182971	TAACTTACATTGA
chr6	7137387	7137388	chr6:7137388:G:C	rs75062200	G	C	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	7176794	7176795	chr6:7176795:C:T	rs41302865	C	T	C	Sox1.mouse_HMG_3	5	1	+	4.869806392920717	8.682210947937902	TCACTCGCAGTGA
chr6	7176795	7176796	chr6:7176796:G:A	rs113682311	G	A	G	Sox1.mouse_HMG_3	6	1	+	4.869806392920717	5.346322332575939	TCACTCGCAGTGA
chr6	7438836	7438837	chr6:7438837:G:A	rs11243180	G	A	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	7443989	7443990	chr6:7443990:G:A	rs12199530	G	A	A	Sox1.mouse_HMG_3	1	1	-	5.930060729195997	0.9717884980823714	TCAATAGCGTTGC
chr6	7642799	7642800	chr6:7642800:C:T	rs9392164	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	7642836	7642837	chr6:7642837:A:C	rs9392165	A	C	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	7959489	7959490	chr6:7959490:C:T	rs17340112	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	7974633	7974634	chr6:7974634:A:G	rs7769739	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	8071438	8071439	chr6:8071439:A:T	rs9378519	A	T	A	Sox1.mouse_HMG_3	3	1	+	6.636125278108398	-0.1649018838086087	TCAAATCCAGTGA
chr6	8284016	8284017	chr6:8284017:C:T	rs660214	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	8499645	8499646	chr6:8499646:C:A	rs77107642	C	A	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr6	8499674	8499675	chr6:8499675:C:G	rs148596699	C	G	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	8550937	8550938	chr6:8550938:A:G	rs1796697	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	9456978	9456979	chr6:9456979:C:T	rs188930523	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.113283483328514	0.15501125221488765	ACAATCCCATTGG
chr6	10071775	10071776	chr6:10071776:T:A	rs4716256	T	A	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	10219614	10219615	chr6:10219615:G:A	rs56324017	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr6	10367627	10367628	chr6:10367628:T:A	rs9466075	T	A	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	10481156	10481157	chr6:10481157:T:C	rs502431	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.923261587114268	-1.9854931922009518	TCAATTAGATTGG
chr6	10548283	10548284	chr6:10548284:G:T	rs1226003	G	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	10555055	10555056	chr6:10555056:T:C	rs3756948	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	10583092	10583093	chr6:10583093:T:A	chr6:10583093:T:A	T	A	T	Sox1.mouse_HMG_3	10	1	+	4.391155317234654	-2.5089407043799934	TGAATGACATTGG
chr6	10584437	10584438	chr6:10584438:G:A	rs9379521	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	10621313	10621314	chr6:10621314:C:T	rs9460944	C	T	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr6	10956356	10956357	chr6:10956357:A:C	rs58835563	A	C	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	11005608	11005609	chr6:11005609:T:C	rs2295602	T	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	11065688	11065689	chr6:11065689:C:T	rs9468373	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr6	11179438	11179439	chr6:11179439:G:A	rs9295807	G	A	A	Sox1.mouse_HMG_3	3	1	-	4.4719607489119735	-0.1649018838086087	TCACATCCAGTGA
chr6	11229165	11229166	chr6:11229166:C:G	rs72827149	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	11236176	11236177	chr6:11236177:G:A	rs35210001	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	11333450	11333451	chr6:11333451:T:C	rs4713432	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	11388048	11388049	chr6:11388049:A:T	rs5019594	A	T	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	11430880	11430881	chr6:11430881:T:G	rs12664948	T	G	T	Sox1.mouse_HMG_3	2	1	-	6.037143391136462	-0.8716113881787586	ACAATACCATAGA
chr6	11433127	11433128	chr6:11433128:T:A	rs6909496	T	A	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	11535699	11535700	chr6:11535700:T:C	rs57324707	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	11618757	11618758	chr6:11618758:T:C	rs111461403	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	11649988	11649989	chr6:11649989:C:T	rs1150577	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	11672464	11672465	chr6:11672465:T:G	rs1150590	T	G	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	11685056	11685057	chr6:11685057:G:A	rs4711398	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	11767602	11767603	chr6:11767603:C:T	rs146574481	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	11917836	11917837	chr6:11917837:G:A	rs147588741	G	A	G	Sox1.mouse_HMG_3	11	1	-	6.250563472819213	3.9330897673314174	TCAATGGCATTCG
chr6	11922154	11922155	chr6:11922155:T:C	rs999823	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	12070028	12070029	chr6:12070029:T:A	chr6:12070029:T:A	T	A	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	12206912	12206913	chr6:12206913:G:A	rs774225733	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	12234965	12234966	chr6:12234966:T:C	rs4490660	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	12354154	12354155	chr6:12354155:T:C	rs2050288	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	12504734	12504735	chr6:12504735:T:C	rs1413513	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	12679671	12679672	chr6:12679672:A:G	rs12196110	A	G	A	Sox1.mouse_HMG_3	6	1	-	8.594095729606115	9.107173544716586	TCACTTTCAGTGA
chr6	12753212	12753213	chr6:12753213:T:C	rs150885542	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	13260220	13260221	chr6:13260221:C:T	rs396360	C	T	T	Sox1.mouse_HMG_3	12	1	-	4.894243198263659	8.182211674586862	TCCATTACATTGG
chr6	13309109	13309110	chr6:13309110:G:A	rs2439540	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	13423137	13423138	chr6:13423138:C:T	rs147002679	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr6	13426551	13426552	chr6:13426552:C:A	rs7758003	C	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr6	13509914	13509915	chr6:13509915:A:G	rs4715370	A	G	a	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr6	13794874	13794875	chr6:13794875:G:A	rs11961150	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr6	14018345	14018346	chr6:14018346:C:T	rs35370909	C	T	C	Sox1.mouse_HMG_3	12	1	-	3.93048265713827	7.218451133461473	TCAATGGCACTGG
chr6	14018358	14018359	chr6:14018359:C:T	rs4715871	C	T	c	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	14025267	14025268	chr6:14025268:G:A	rs534340448	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	14243760	14243761	chr6:14243761:A:G	rs73726423	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	14742566	14742567	chr6:14742567:G:A	rs2500076	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.847947502820089	1.7381070718341904	TAAATATCATTGC
chr6	14807085	14807086	chr6:14807086:A:G	rs556284371	A	G	A	Sox1.mouse_HMG_3	10	1	-	3.4672758986960504	-1.1679368971085637	TCACTTCCCTTGC
chr6	15256836	15256837	chr6:15256837:G:A	rs10949287	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	15285077	15285078	chr6:15285078:A:T	rs116599870	A	T	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	15484985	15484986	chr6:15484986:C:G	chr6:15484986:C:G	C	G	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	15497362	15497363	chr6:15497363:T:C	rs58121172	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	15622381	15622382	chr6:15622382:G:T	rs2743872	G	T	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	15688379	15688380	chr6:15688380:G:T	rs6937887	G	T	T	Sox1.mouse_HMG_3	6	1	+	6.872142592165767	6.784027373833981	TCAATTGTATTAA
chr6	15815962	15815963	chr6:15815963:A:G	rs11751408	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	15898653	15898654	chr6:15898654:C:T	rs116460888	C	T	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr6	16004972	16004973	chr6:16004973:G:A	rs9477012	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	16078247	16078248	chr6:16078248:A:G	rs2876407	A	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	16080443	16080444	chr6:16080444:A:C	rs4716041	A	C	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr6	16215618	16215619	chr6:16215619:C:T	rs61569822	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	16586444	16586445	chr6:16586445:T:C	rs236971	T	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	16588011	16588012	chr6:16588012:A:G	rs236974	A	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	16685288	16685289	chr6:16685289:T:G	rs2327995	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	16832591	16832592	chr6:16832592:C:A	rs56404205	C	A	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	16921544	16921545	chr6:16921545:C:T	rs6904876	C	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	16921545	16921546	chr6:16921546:G:A	rs73725283	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	17062862	17062863	chr6:17062863:A:G	rs9383240	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	17418877	17418878	chr6:17418878:T:C	rs544959207	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	17446974	17446975	chr6:17446975:G:A	rs58337072	G	A	A	Sox1.mouse_HMG_3	3	1	-	5.550189963435788	0.9133273307152063	TCACCTGCATTGA
chr6	17467111	17467112	chr6:17467112:C:T	rs10949427	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	17780553	17780554	chr6:17780554:T:C	rs4716184	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.815203935006014	-1.9858232269109894	TCAATGTCATCCA
chr6	17848332	17848333	chr6:17848333:A:G	rs585918	A	G	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	17859929	17859930	chr6:17859930:C:A	rs76768776	C	A	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr6	18052084	18052085	chr6:18052085:C:T	rs571770637	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	18284484	18284485	chr6:18284485:C:T	rs214544	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr6	18364501	18364502	chr6:18364502:G:C	rs6928572	G	C	c	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	18432448	18432449	chr6:18432449:T:G	chr6:18432449:T:G	T	G	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr6	18545922	18545923	chr6:18545923:G:A	rs114592460	G	A	G	Sox1.mouse_HMG_3	8	1	-	3.4672758986960504	3.4672758986960504	TCACTTCCCTTGC
chr6	18690778	18690779	chr6:18690779:C:T	rs9368017	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	18784213	18784214	chr6:18784214:C:A	rs7770682	C	A	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	18791559	18791560	chr6:18791560:C:T	rs12205846	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	19394803	19394804	chr6:19394804:T:G	rs16882123	T	G	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	19433289	19433290	chr6:19433290:T:C	rs115618494	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr6	19667187	19667188	chr6:19667188:A:G	rs9358259	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	20127516	20127517	chr6:20127517:A:G	rs530748219	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.3177435899019105	-0.5910111894133099	TCACTTACATTAC
chr6	20320069	20320070	chr6:20320070:G:C	rs114274896	G	C	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr6	20481446	20481447	chr6:20481447:G:C	rs4134938	G	C	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr6	20630240	20630241	chr6:20630241:G:A	rs9465844	G	A	G	Sox1.mouse_HMG_3	6	1	+	5.032441332750334	5.508957272405556	TCTCTGGCATTGA
chr6	20700389	20700390	chr6:20700390:G:A	rs11970626	G	A	G	Sox1.mouse_HMG_3	11	1	-	8.518924972681292	6.201451267193496	TCACTATCATTCA
chr6	20738177	20738178	chr6:20738178:A:G	rs9368229	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	20826427	20826428	chr6:20826428:A:G	rs192213622	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	20826433	20826434	chr6:20826434:G:T	rs189088108	G	T	G	Sox1.mouse_HMG_3	7	1	-	5.329354117061543	0.03885293171351245	ACAATTCCATTTA
chr6	20826442	20826443	chr6:20826443:T:C	rs184805301	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	20827813	20827814	chr6:20827814:T:G	rs190783796	T	G	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	20990852	20990853	chr6:20990853:G:A	rs12528036	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	21189756	21189757	chr6:21189757:T:C	rs10452581	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.852529778905107	-1.9484973830118975	GCAATAACATTAA
chr6	21426967	21426968	chr6:21426968:C:T	rs116634392	C	T	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	21735122	21735123	chr6:21735123:A:G	rs12528487	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr6	21924284	21924285	chr6:21924285:A:G	rs12196619	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.441327599800456	-2.445581908000052	TCAGTGCCATTGG
chr6	22057336	22057337	chr6:22057337:C:T	rs55775505	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	22067944	22067945	chr6:22067945:G:T	rs4145443	G	T	G	Sox1.mouse_HMG_3	1	1	-	5.860755328768246	-1.0419974585910992	TCACTTACATTCC
chr6	22098977	22098978	chr6:22098978:A:G	rs140546200	A	G	A	Sox1.mouse_HMG_3	6	1	+	8.442836078799518	7.966320139144294	TTAATAACATTGT
chr6	22151517	22151518	chr6:22151518:T:C	rs6923515	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	22366580	22366581	chr6:22366581:G:A	rs1205917	G	A	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	22409872	22409873	chr6:22409873:C:T	rs139361548	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	22421125	22421126	chr6:22421126:A:T	rs4370356	A	T	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr6	22809565	22809566	chr6:22809566:T:C	rs35349492	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.260715111750644	-1.5403120501663625	CCAATTTCATTGT
chr6	22845822	22845823	chr6:22845823:A:G	rs1018401	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr6	23654824	23654825	chr6:23654825:T:C	rs561071	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	23955367	23955368	chr6:23955368:C:G	rs489365	C	G	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr6	24033708	24033709	chr6:24033709:G:A	rs58229603	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	24447151	24447152	chr6:24447152:A:T	rs113984289	A	T	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	24533326	24533327	chr6:24533327:A:T	rs12200033	A	T	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	24583630	24583631	chr6:24583631:C:T	rs141038527	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	24583655	24583656	chr6:24583656:T:G	rs753674872	T	G	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	24614834	24614835	chr6:24614835:G:A	rs7763790	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	24631908	24631909	chr6:24631909:C:G	rs6923867	C	G	G	Sox1.mouse_HMG_3	11	1	-	5.517616030106131	0.9507873379865672	TCACTGACATAGA
chr6	24644029	24644030	chr6:24644030:T:C	rs115563696	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.501012288298497	-0.38589721950201095	TCAATAACATAGT
chr6	24803558	24803559	chr6:24803559:C:T	rs4076540	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	25050402	25050403	chr6:25050403:C:T	rs12525405	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	25139149	25139150	chr6:25139150:G:A	rs7751844	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	25302718	25302719	chr6:25302719:T:C	rs9348670	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	25302719	25302720	chr6:25302720:G:A	rs139951632	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr6	25318817	25318818	chr6:25318818:A:G	rs113875637	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr6	25337502	25337503	chr6:25337503:G:T	rs1983581	G	T	T	Sox1.mouse_HMG_3	7	1	-	5.356455078230219	0.06595389288218834	ACAATTACCTTGA
chr6	25472558	25472559	chr6:25472559:G:A	rs9393646	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	25700179	25700180	chr6:25700180:A:G	rs9467571	A	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr6	25700223	25700224	chr6:25700224:C:T	rs186298385	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	25764911	25764912	chr6:25764912:A:G	rs2154217	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.548929167819859	-0.3379803399806487	GCAATAACATTGT
chr6	25776720	25776721	chr6:25776721:G:A	rs11754288	G	A	G	Sox1.mouse_HMG_3	5	1	+	9.078190232521036	10.310863003588123	TCACTGCCATTGG
chr6	25911546	25911547	chr6:25911547:T:C	rs3846838	T	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	26026985	26026986	chr6:26026986:G:A	rs116366733	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	26027008	26027009	chr6:26027009:C:G	rs752050927	C	G	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	26028590	26028591	chr6:26028591:T:G	rs1540276	T	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	26032834	26032835	chr6:26032835:T:A	rs75975790	T	A	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	26033017	26033018	chr6:26033018:G:A	rs112700668	G	A	A	Sox1.mouse_HMG_3	5	1	+	5.785270011250152	7.01794278231724	TCAAAGCCATTAA
chr6	26045036	26045037	chr6:26045037:C:T	chr6:26045037:C:T	C	T	C	Sox1.mouse_HMG_3	3	1	+	6.273772861517994	1.6369102287974144	TCACCAGCATTGA
chr6	26057552	26057553	chr6:26057553:A:C	rs13201821	A	C	A	Sox1.mouse_HMG_3	10	1	-	8.042312616026322	1.1422165944116744	TCAAATACATTGT
chr6	26205724	26205725	chr6:26205725:C:A	rs77832727	C	A	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr6	26224882	26224883	chr6:26224883:A:G	rs74758545	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr6	26239175	26239176	chr6:26239176:A:G	rs9358913	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.820264244076661	-1.9807629178403432	ACAATGCCATTTA
chr6	26255222	26255223	chr6:26255223:A:G	rs6935954	A	G	.	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	26271484	26271485	chr6:26271485:A:T	rs9393690	A	T	.	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	26286239	26286240	chr6:26286240:T:C	rs56763414	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.414207735650361	-0.3868194262666447	TCAATAAAATTAA
chr6	26328925	26328926	chr6:26328926:C:T	rs73401228	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	26534514	26534515	chr6:26534515:T:C	rs9467778	T	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	26553763	26553764	chr6:26553764:G:T	chr6:26553764:G:T	G	T	G	Sox1.mouse_HMG_3	6	1	-	4.867142237094981	4.918695579971519	TCAATTCCATTTG
chr6	26555650	26555651	chr6:26555651:A:G	rs10484442	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.435280624969723	1.5483711171692145	TAAATAGCATTGA
chr6	26575468	26575469	chr6:26575469:G:A	rs9467798	G	A	A	Sox1.mouse_HMG_3	7	1	-	10.132694222788455	6.500226731693264	TTAATTACATTGA
chr6	26582185	26582186	chr6:26582186:G:A	rs9379892	G	A	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	27518853	27518854	chr6:27518854:T:A	rs7774613	T	A	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr6	27518880	27518881	chr6:27518881:G:A	rs79577505	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	27583429	27583430	chr6:27583430:T:G	rs73739148	T	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	27680270	27680271	chr6:27680271:C:G	rs117974412	C	G	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr6	27895288	27895289	chr6:27895289:G:A	rs1196561076	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	27977617	27977618	chr6:27977618:G:A	rs28360499	G	A	A	Sox1.mouse_HMG_3	8	1	+	5.208127416654298	12.116882195969517	TCAATGCCGTTGT
chr6	28356025	28356026	chr6:28356026:C:T	rs116088066	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr6	28607394	28607395	chr6:28607395:T:A	rs1474986	T	A	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	28643601	28643602	chr6:28643602:C:T	rs114882957	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	28810945	28810946	chr6:28810946:C:T	rs3131341	C	T	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr6	28970575	28970576	chr6:28970576:T:A	rs12110866	T	A	t	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	29514170	29514171	chr6:29514171:G:A	rs1010409	G	A	A	Sox1.mouse_HMG_3	6	1	+	5.82747103938571	6.303986979040932	ACACTGGCATTGG
chr6	29624901	29624902	chr6:29624902:G:A	rs28359983	G	A	G	Sox1.mouse_HMG_3	7	1	-	4.527104712922618	0.8946372218274257	TCACATGCATTGG
chr6	29624912	29624913	chr6:29624913:C:A	rs28359984	C	A	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	29655816	29655817	chr6:29655817:T:C	rs29254	T	C	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr6	29665961	29665962	chr6:29665962:A:G	rs553004281	A	G	A	Sox1.mouse_HMG_3	2	1	+	3.7903485817074345	-3.118406197607786	TCACTAGCATTTC
chr6	29723341	29723342	chr6:29723342:T:G	rs1186655388	T	G	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	29723362	29723363	chr6:29723363:C:G	rs2072896	C	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	29724784	29724785	chr6:29724785:A:G	rs1736926	A	G	G	Sox1.mouse_HMG_3	0	1	-	6.643349103080283	-0.20883003901300135	TCAAACACATTGA
chr6	29726160	29726161	chr6:29726161:G:A	rs2735061	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr6	29726191	29726192	chr6:29726192:C:T	rs1736922	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	29750577	29750578	chr6:29750578:A:C	rs909729	A	C	a	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	29750605	29750606	chr6:29750606:G:A	rs1610733	G	A	a	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr6	29769899	29769900	chr6:29769900:T:C	rs2844843	T	C	t	Sox1.mouse_HMG_3	9	1	+	5.226090230180219	-1.6608192776202884	TCATTTTCATTGC
chr6	29792107	29792108	chr6:29792108:G:A	rs1611208	G	A	-	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	29792145	29792146	chr6:29792146:T:C	rs1611209	T	C	-	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	29814249	29814250	chr6:29814250:C:T	rs1610706	C	T	-	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	29814270	29814271	chr6:29814271:C:A	rs1610707	C	A	-	Sox1.mouse_HMG_3	7	1	+	5.065611483499831	-0.2248897018481999	ACAAAAACATTGG
chr6	29942447	29942448	chr6:29942448:C:G	rs77051346	C	G	-	Sox1.mouse_HMG_3	5	1	+	5.774875550488732	9.078190232521036	TCACTCCCATTGG
chr6	29942449	29942450	chr6:29942450:C:T	rs193269784	C	T	-	Sox1.mouse_HMG_3	7	1	+	5.774875550488732	2.14240805939354	TCACTCCCATTGG
chr6	29954295	29954296	chr6:29954296:A:T	rs5027910	A	T	-	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	29976128	29976129	chr6:29976129:T:C	rs3823368	T	C	-	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	29976138	29976139	chr6:29976139:A:T	rs3823369	A	T	-	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	29976169	29976170	chr6:29976170:G:A	rs2245958	G	A	-	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr6	30056616	30056617	chr6:30056617:C:T	rs9261262	C	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	30107658	30107659	chr6:30107659:G:C	rs370273307	G	C	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	30143700	30143701	chr6:30143701:T:C	rs9261499	T	C	T	Sox1.mouse_HMG_3	0	1	+	4.520036112129844	-2.3321430299634405	TCAATTCTAATGA
chr6	30143709	30143710	chr6:30143710:A:G	rs9261500	A	G	A	Sox1.mouse_HMG_3	9	1	+	4.520036112129844	7.638870582817818	TCAATTCTAATGA
chr6	30170384	30170385	chr6:30170385:C:G	rs1029239	C	G	G	Sox1.mouse_HMG_3	7	1	+	8.003053822858028	1.123317432393418	TCAATTTCATTAT
chr6	30234651	30234652	chr6:30234652:C:T	rs3132674	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	30793909	30793910	chr6:30793910:A:G	rs114898531	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	30926981	30926982	chr6:30926982:G:A	rs2532934	G	A	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	30971105	30971106	chr6:30971106:A:G	rs9368649	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.997916916615058	1.3627041208104438	ACAATTACAGTGC
chr6	31012015	31012016	chr6:31012016:G:A	rs9366764	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr6	31012132	31012133	chr6:31012133:T:C	rs9262461	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	31012155	31012156	chr6:31012156:T:C	rs9380204	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	31058656	31058657	chr6:31058657:A:G	rs2517523	A	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	31171353	31171354	chr6:31171354:T:C	rs17197220	T	C	T	Sox1.mouse_HMG_3	0	1	+	6.258655009015268	-0.5935241330780181	TCAAATTTATTGA
chr6	31245724	31245725	chr6:31245725:G:A	rs2394897	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	31419947	31419948	chr6:31419948:C:G	rs9266853	C	G	-	Sox1.mouse_HMG_3	5	1	-	5.259680759530836	1.9563660774985308	TCAATGACCTTGT
chr6	31463111	31463112	chr6:31463112:T:C	rs6928071	T	C	-	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	31473284	31473285	chr6:31473285:A:C	rs62395330	A	C	-	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	31565828	31565829	chr6:31565829:C:T	rs2857708	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.144195826422308	4.6311180113118375	TCAATGCCACTGC
chr6	31727659	31727660	chr6:31727660:G:A	rs138907940	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	31781042	31781043	chr6:31781043:G:A	rs707926	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr6	32038226	32038227	chr6:32038227:T:C	rs11449852	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.888835370831645	-1.0199194084835752	TCAAAAAAATTGA
chr6	32079658	32079659	chr6:32079659:C:G	rs204877	C	G	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	32271649	32271650	chr6:32271650:G:A	rs3115558	G	A	g	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	32337592	32337593	chr6:32337593:T:G	rs926594	T	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	32371570	32371571	chr6:32371571:C:T	rs2076536	C	T	c	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	32379971	32379972	chr6:32379972:A:G	rs9268446	A	G	a	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	32388080	32388081	chr6:32388081:T:C	rs17208608	T	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr6	32522808	32522809	chr6:32522809:G:A	rs73405196	G	A	.	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	32522815	32522816	chr6:32522816:T:C	rs112438042	T	C	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr6	32526813	32526814	chr6:32526814:T:C	rs112158862	T	C	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	32576343	32576344	chr6:32576344:T:C	rs115468973	T	C	.	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	32586667	32586668	chr6:32586668:G:A	rs9270094	G	A	.	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	32632670	32632671	chr6:32632671:C:T	rs9272118	C	T	.	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	32632692	32632693	chr6:32632693:T:C	rs9272119	T	C	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	32634287	32634288	chr6:32634288:T:C	rs72848263	T	C	.	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	32639675	32639676	chr6:32639676:C:T	rs9272583	C	T	.	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	32668786	32668787	chr6:32668787:T:A	chr6:32668787:T:A	T	A	T	Sox1.mouse_HMG_3	0	1	+	4.968349801535139	2.1425932051784966	TCACTGCCATTAG
chr6	32668797	32668798	chr6:32668798:A:C	rs113319463	A	C	A	Sox1.mouse_HMG_3	11	1	+	4.968349801535139	4.511361540401474	TCACTGCCATTAG
chr6	32668813	32668814	chr6:32668814:A:G	rs9274669	A	G	a	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	32682455	32682456	chr6:32682456:T:C	rs9275122	T	C	t	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	32682490	32682491	chr6:32682491:T:C	rs2516006	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	32777546	32777547	chr6:32777547:T:C	rs2170183	T	C	c	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr6	32957812	32957813	chr6:32957813:T:G	rs35546426	T	G	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr6	33001918	33001919	chr6:33001919:C:T	rs12193085	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr6	33272728	33272729	chr6:33272729:A:G	rs464921	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	33281476	33281477	chr6:33281477:C:T	rs79356638	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	33858792	33858793	chr6:33858793:G:A	rs4713696	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	34011035	34011036	chr6:34011036:A:T	rs73744976	A	T	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	34037291	34037292	chr6:34037292:A:G	rs2451383	A	G	G	Sox1.mouse_HMG_3	6	1	-	4.804427055858008	5.317504870968479	TCACAGTCATTGT
chr6	34055632	34055633	chr6:34055633:G:A	rs565659861	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	34231031	34231032	chr6:34231032:C:A	rs9688762	C	A	C	Sox1.mouse_HMG_3	6	1	+	5.014058140623293	5.065611483499831	ACAAAACCATTGG
chr6	34282424	34282425	chr6:34282425:T:C	rs12654	T	C	c	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr6	34926829	34926830	chr6:34926830:T:C	rs149764889	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr6	34926851	34926852	chr6:34926852:T:G	rs559422541	T	G	T	Sox1.mouse_HMG_3	8	1	-	5.860755328768246	-1.0479994505469752	TCACTTACATTCC
chr6	35415645	35415646	chr6:35415646:G:A	rs78609397	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	35453282	35453283	chr6:35453283:A:T	rs45484291	A	T	a	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	35453308	35453309	chr6:35453309:G:T	rs45497095	G	T	g	Sox1.mouse_HMG_3	1	1	-	4.815203935006014	-2.0875488523533283	TCAATGTCATCCA
chr6	35495424	35495425	chr6:35495425:G:T	rs7744287	G	T	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr6	35611224	35611225	chr6:35611225:A:G	rs3777747	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.914788919958715	1.2795761241541013	TCAATAATAGTGC
chr6	35665139	35665140	chr6:35665140:C:A	rs75710780	C	A	C	Sox1.mouse_HMG_3	11	1	-	6.992352803948963	0.1080504063416039	TCACTAGCAGTGT
chr6	35684731	35684732	chr6:35684732:G:A	rs187536669	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	36110183	36110184	chr6:36110184:G:A	rs3804451	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr6	36119198	36119199	chr6:36119199:A:C	rs11759192	A	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	36379151	36379152	chr6:36379152:A:G	rs11759903	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr6	36379196	36379197	chr6:36379197:G:A	rs11755362	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	36750196	36750197	chr6:36750197:G:A	rs77463948	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr6	36751932	36751933	chr6:36751933:G:A	rs78720743	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	36828029	36828030	chr6:36828030:G:A	rs753581000	G	A	G	Sox1.mouse_HMG_3	3	1	-	5.479249201043732	0.8423865683231504	TCACTGCCACTGA
chr6	36906609	36906610	chr6:36906610:A:G	rs2395663	A	G	A	Sox1.mouse_HMG_3	4	1	+	7.480019814624397	5.215136588814364	TCAAATGCATTGC
chr6	37177879	37177880	chr6:37177880:A:G	rs139855099	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	37657309	37657310	chr6:37657310:G:A	rs6930085	G	A	G	Sox1.mouse_HMG_3	11	1	+	7.30598331626094	3.1961428852750418	TCACAGGCATTGA
chr6	37807507	37807508	chr6:37807508:T:C	rs6458029	T	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	37915003	37915004	chr6:37915004:G:A	rs259678	G	A	A	Sox1.mouse_HMG_3	6	1	-	7.643413730240157	7.130335915129686	TCAATGCCAATGA
chr6	38136076	38136077	chr6:38136077:G:A	rs73421866	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr6	38591712	38591713	chr6:38591713:T:C	rs12208087	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr6	38770971	38770972	chr6:38770972:A:T	rs1614699	A	T	T	Sox1.mouse_HMG_3	3	1	+	5.940138917751886	-0.8608882441651182	ACAAAAACATTGT
chr6	38797019	38797020	chr6:38797020:G:T	chr6:38797020:G:T	G	T	G	Sox1.mouse_HMG_3	7	1	-	4.842689855387123	-0.4478113299609088	TCTATTCCATTGG
chr6	39274655	39274656	chr6:39274656:A:G	rs2815036	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	39481698	39481699	chr6:39481699:A:G	rs78764817	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	39897864	39897865	chr6:39897865:T:C	rs73414835	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.7048390422837265	1.0696262464791118	TCAATTACAATGC
chr6	39922522	39922523	chr6:39922523:A:C	rs2984659	A	C	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	39975232	39975233	chr6:39975233:T:A	rs2475808	T	A	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	40336963	40336964	chr6:40336964:G:A	rs9296331	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr6	40636476	40636477	chr6:40636477:C:T	rs9367067	C	T	T	Sox1.mouse_HMG_3	12	1	+	4.26425741116951	4.350034272916211	TCACTAACACTGC
chr6	40678665	40678666	chr6:40678666:A:T	rs17630115	A	T	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	40715366	40715367	chr6:40715367:G:A	rs9462644	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	40956946	40956947	chr6:40956947:G:C	rs6458189	G	C	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	40956978	40956979	chr6:40956979:A:T	rs951090092	A	T	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr6	41209196	41209197	chr6:41209197:A:G	rs4714434	A	G	N	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	41273202	41273203	chr6:41273203:A:G	rs17644657	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.144195826422308	0.5089830306176937	TCAATGCCACTGC
chr6	41355945	41355946	chr6:41355946:C:T	rs9381053	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr6	41480885	41480886	chr6:41480886:A:G	rs9394801	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.289939291985077	1.4030297841845687	TCATTTACATTGA
chr6	41936570	41936571	chr6:41936571:A:G	chr6:41936571:A:G	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.054286604265046	-1.8458094173496007	TCACTGGCACTGA
chr6	41936585	41936586	chr6:41936586:C:G	rs11552780	C	G	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr6	42047965	42047966	chr6:42047966:G:A	rs77303819	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	42167176	42167177	chr6:42167177:G:T	rs57668268	G	T	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr6	42218566	42218567	chr6:42218567:C:T	rs7757788	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	42447085	42447086	chr6:42447086:C:A	rs72859314	C	A	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	42779584	42779585	chr6:42779585:C:T	rs146741325	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	43294965	43294966	chr6:43294966:A:T	rs16896398	A	T	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	43507029	43507030	chr6:43507030:A:G	rs112886696	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.970929941639515	0.06217516232429543	TCAAAGGCATTGC
chr6	43748256	43748257	chr6:43748257:A:G	rs945131	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	43761529	43761530	chr6:43761530:G:A	rs79021145	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	43766868	43766869	chr6:43766869:C:T	rs9381248	C	T	C	Sox1.mouse_HMG_3	2	1	+	3.937620697819106	3.937620697819106	TCCATTGCAGTGA
chr6	43824842	43824843	chr6:43824843:T:C	rs12110400	T	C	T	Sox1.mouse_HMG_3	11	1	-	5.528993017396557	9.638833448382455	TCACTTACATTAG
chr6	43947835	43947836	chr6:43947836:C:T	rs190768973	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	44202707	44202708	chr6:44202708:A:G	rs4337931	A	G	G	Sox1.mouse_HMG_3	4	1	-	5.477439674520019	-1.4226563470946276	TCACTTCCATTAG
chr6	44542273	44542274	chr6:44542274:A:G	rs1998402	A	G	G	Sox1.mouse_HMG_3	0	1	-	4.219028433987917	-2.6331507081053673	TCAAAACCCTTGA
chr6	44607558	44607559	chr6:44607559:T:C	rs73737027	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	44635764	44635765	chr6:44635765:G:A	rs6922821	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	44651365	44651366	chr6:44651366:A:C	rs75149745	A	C	g	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	44714578	44714579	chr6:44714579:T:C	rs227835	T	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr6	45082257	45082258	chr6:45082258:G:T	rs112826330	G	T	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr6	45132586	45132587	chr6:45132587:G:A	rs1285005	G	A	A	Sox1.mouse_HMG_3	1	1	-	5.860665733621987	0.9023935025083598	TCACTAAAATTGC
chr6	45132592	45132593	chr6:45132593:T:C	rs56283067	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr6	45224284	45224285	chr6:45224285:T:A	rs17288250	T	A	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	45813083	45813084	chr6:45813084:C:A	rs570488844	C	A	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	45823272	45823273	chr6:45823273:T:A	rs6458468	T	A	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	45880346	45880347	chr6:45880347:T:C	rs1025414408	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.4494589454219575	-0.4592958338932627	TCAACACCATTGT
chr6	45947193	45947194	chr6:45947194:T:C	rs11757345	T	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	46220016	46220017	chr6:46220017:A:T	rs2799355	A	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	46254409	46254410	chr6:46254410:G:A	rs1442224	G	A	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr6	46323575	46323576	chr6:46323576:A:G	rs569184844	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	46323602	46323603	chr6:46323603:A:G	rs9472739	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	46323613	46323614	chr6:46323614:A:G	rs188788696	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	46350830	46350831	chr6:46350831:T:C	rs11963889	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr6	46825437	46825438	chr6:46825438:G:A	rs6920863	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	46921546	46921547	chr6:46921547:G:A	rs17385889	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	46961868	46961869	chr6:46961869:T:C	rs1889578	T	C	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr6	47153185	47153186	chr6:47153186:A:G	rs115423236	A	G	A	Sox1.mouse_HMG_3	0	1	-	8.059053781688576	1.206874639595291	TCAATACAATTGT
chr6	47519221	47519222	chr6:47519222:A:G	rs1385741	A	G	A	Sox1.mouse_HMG_3	0	1	+	4.853367197201214	0.8269446514645724	AAAATGACATTGA
chr6	47623470	47623471	chr6:47623471:G:C	rs17217136	G	C	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr6	47651016	47651017	chr6:47651017:A:G	rs9349421	A	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	48424210	48424211	chr6:48424211:T:C	rs144086879	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr6	48614039	48614040	chr6:48614040:T:C	rs3010531	T	C	T	Sox1.mouse_HMG_3	12	1	+	6.136325169630318	6.050548307883615	TCACTCTCATTGT
chr6	48706979	48706980	chr6:48706980:G:A	rs10484857	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	48733357	48733358	chr6:48733358:T:C	rs9473472	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	49326104	49326105	chr6:49326105:G:C	rs7450140	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	49563719	49563720	chr6:49563720:G:C	rs12195674	G	C	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	50188035	50188036	chr6:50188036:C:T	rs1340840	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	50278104	50278105	chr6:50278105:C:T	rs548827645	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	50602675	50602676	chr6:50602676:T:C	rs562247	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	50602680	50602681	chr6:50602681:C:A	rs562219	C	A	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	50714597	50714598	chr6:50714598:T:C	rs78460443	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	50816274	50816275	chr6:50816275:C:G	rs2143079	C	G	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr6	50978807	50978808	chr6:50978808:C:T	rs4141973	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	51262050	51262051	chr6:51262051:G:T	rs2504691	G	T	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	51541971	51541972	chr6:51541972:G:C	chr6:51541972:G:C	G	C	G	Sox1.mouse_HMG_3	11	1	+	9.441978208247704	4.8751495161281415	TCACTGGCATTGC
chr6	51636005	51636006	chr6:51636006:A:T	rs150124953	A	T	A	Sox1.mouse_HMG_3	4	1	-	6.476695329997108	1.8414825341924965	TCACTATCATTAC
chr6	51640518	51640519	chr6:51640519:A:G	rs1819565	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.442179640316297	-2.4579163812983498	TCAATTGCATTTG
chr6	51640538	51640539	chr6:51640539:T:A	rs1819564	T	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	51743947	51743948	chr6:51743948:C:G	rs9463707	C	G	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr6	51812284	51812285	chr6:51812285:T:G	rs6929552	T	G	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	52310470	52310471	chr6:52310471:T:C	rs73441794	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	52407627	52407628	chr6:52407628:C:T	rs116301436	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr6	52407638	52407639	chr6:52407639:G:A	rs140250304	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	52539011	52539012	chr6:52539012:T:C	rs2268729	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	52539022	52539023	chr6:52539023:T:C	rs78274921	T	C	T	Sox1.mouse_HMG_3	3	1	+	9.013522190067285	13.650384822787863	TCATTAACATTGA
chr6	53042486	53042487	chr6:53042487:G:A	rs115214880	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	53809436	53809437	chr6:53809437:G:A	rs9382240	G	A	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr6	53809485	53809486	chr6:53809486:C:T	rs4475321	C	T	c	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	53837040	53837041	chr6:53837041:A:G	rs74411716	A	G	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	53857852	53857853	chr6:53857853:G:A	rs114440604	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr6	53989394	53989395	chr6:53989395:G:A	rs55680514	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	54205492	54205493	chr6:54205493:T:A	rs769035324	T	A	T	Sox1.mouse_HMG_3	0	1	+	4.968349801535139	2.1425932051784966	TCACTGCCATTAG
chr6	55580924	55580925	chr6:55580925:G:C	rs6902708	G	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr6	55678545	55678546	chr6:55678546:T:C	rs9357872	T	C	C	Sox1.mouse_HMG_3	3	1	-	11.481843156884748	4.680815994967743	TCAATATCAGTGA
chr6	55851361	55851362	chr6:55851362:C:T	rs3823038	C	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr6	55877978	55877979	chr6:55877979:G:C	rs10485078	G	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr6	56200094	56200095	chr6:56200095:A:G	rs76948360	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	56220450	56220451	chr6:56220451:T:G	rs9382595	T	G	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	56239784	56239785	chr6:56239785:T:A	rs12209422	T	A	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	56329183	56329184	chr6:56329184:A:G	rs9382619	A	G	A	Sox1.mouse_HMG_3	11	1	+	6.562472191743812	10.67231262272971	TCACTATCATTAT
chr6	56542308	56542309	chr6:56542309:C:T	rs62412509	C	T	C	Sox1.mouse_HMG_3	6	1	-	8.435280624969723	8.911796564624945	TGAATAGCATTGA
chr6	56842152	56842153	chr6:56842153:A:T	rs36094082	A	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr6	57256920	57256921	chr6:57256921:T:C	rs6927231	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.741669671347038	-1.1584263502676087	TCAATTCCATTTT
chr6	58366110	58366111	chr6:58366111:A:G	rs10458030	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.950818835485595	-1.9360906723149125	GCAATTACATTGG
chr6	61556300	61556301	chr6:61556301:G:T	chr6:61556301:G:T	G	T	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr6	61717542	61717543	chr6:61717543:T:C	rs7766165	T	C	T	Sox1.mouse_HMG_3	2	1	+	5.603522036657203	5.603522036657203	ACTATAGCATTGA
chr6	61842624	61842625	chr6:61842625:T:C	rs56229006	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	62480085	62480086	chr6:62480086:G:C	rs62416846	G	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	63527733	63527734	chr6:63527734:G:T	rs536887062	G	T	G	Sox1.mouse_HMG_3	11	1	+	5.792371225083196	-1.091931172524164	TCACATACATTGC
chr6	63609265	63609266	chr6:63609266:A:G	rs11757655	A	G	A	Sox1.mouse_HMG_3	5	1	+	8.349822172382634	7.117149401315546	TCAACATCATTGA
chr6	63927484	63927485	chr6:63927485:T:C	rs1000679	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	64050992	64050993	chr6:64050993:A:G	rs9353474	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	64325020	64325021	chr6:64325021:C:T	rs647367	C	T	T	Sox1.mouse_HMG_3	3	1	+	4.627992962554899	-0.008869670165683408	TCACTGAAATTGC
chr6	64325045	64325046	chr6:64325046:G:C	rs647342	G	C	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	64489938	64489939	chr6:64489939:C:T	rs13194506	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	64591273	64591274	chr6:64591274:C:T	rs62415825	C	T	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	64591317	64591318	chr6:64591318:T:C	rs62415826	T	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr6	64591323	64591324	chr6:64591324:G:A	rs62415827	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	64957397	64957398	chr6:64957398:A:G	rs9360101	A	G	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr6	65837920	65837921	chr6:65837921:C:A	rs115310609	C	A	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr6	65987945	65987946	chr6:65987946:T:C	rs4710305	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	66081295	66081296	chr6:66081296:G:T	rs3912417	G	T	g	Sox1.mouse_HMG_3	1	1	+	5.6095240286130785	7.554004584858797	AGAATAGCATTGA
chr6	66638526	66638527	chr6:66638527:C:T	rs1026389	C	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr6	67031267	67031268	chr6:67031268:G:A	rs62417243	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr6	67795445	67795446	chr6:67795446:A:T	rs12200076	A	T	A	Sox1.mouse_HMG_3	0	1	-	4.3427061584010005	1.5169495620443576	TCAATCCCATTTA
chr6	68108313	68108314	chr6:68108314:A:G	rs777638	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	68252942	68252943	chr6:68252943:G:T	rs6931224	G	T	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	68436906	68436907	chr6:68436907:C:T	rs62417070	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	68826689	68826690	chr6:68826690:T:C	rs62418566	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr6	68858840	68858841	chr6:68858841:G:T	rs518704	G	T	T	Sox1.mouse_HMG_3	11	1	+	5.88858557487535	-0.9957168227320099	ACAAAACCATTGT
chr6	69139310	69139311	chr6:69139311:C:T	rs11759629	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	70293065	70293066	chr6:70293066:A:G	rs3793075	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	70369608	70369609	chr6:70369609:C:T	rs536161225	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	70369619	70369620	chr6:70369620:C:G	rs981558832	C	G	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr6	70399116	70399117	chr6:70399117:G:C	chr6:70399117:G:C	G	C	G	Sox1.mouse_HMG_3	1	1	-	4.851348613087694	-2.0514041742716502	TCAAGTCCATTGG
chr6	71033203	71033204	chr6:71033204:T:C	rs6929275	T	C	t	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr6	71246703	71246704	chr6:71246704:G:A	rs12523875	G	A	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	71339204	71339205	chr6:71339205:T:C	rs828649	T	C	C	Sox1.mouse_HMG_3	8	1	-	7.813423352329854	0.9046685730146333	TCAGTTGCATTGA
chr6	71444628	71444629	chr6:71444629:G:A	rs9360453	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	71578067	71578068	chr6:71578068:C:T	rs72653119	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	72205308	72205309	chr6:72205309:T:C	rs72937865	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	72763190	72763191	chr6:72763191:T:C	rs10046418	T	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	72872263	72872264	chr6:72872264:A:G	rs9351949	A	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	73056089	73056090	chr6:73056090:C:G	rs1935541	C	G	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	73462185	73462186	chr6:73462186:C:A	rs745911886	C	A	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	73910155	73910156	chr6:73910156:T:C	rs2917881	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	73910169	73910170	chr6:73910170:T:C	rs2917882	T	C	C	Sox1.mouse_HMG_3	9	1	+	3.7745549577001456	-3.1123545501003624	TCACCAGCATTGC
chr6	74019002	74019003	chr6:74019003:C:T	rs4706565	C	T	c	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	74289903	74289904	chr6:74289904:T:C	rs875303	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.103816083683004	1.1950613043677834	ACAATTCCATTAA
chr6	74320899	74320900	chr6:74320900:T:A	rs9343134	T	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr6	74607253	74607254	chr6:74607254:C:T	rs16885151	C	T	T	Sox1.mouse_HMG_3	12	1	+	7.496302306458231	7.582079168204935	TCAATGGCATTAC
chr6	74705661	74705662	chr6:74705662:G:A	rs2502530	G	A	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	74732749	74732750	chr6:74732750:C:T	rs4260730	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr6	75297160	75297161	chr6:75297161:A:G	rs16886430	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.804612899383746	-1.9964142625332615	TCAATAACATGAA
chr6	75482327	75482328	chr6:75482328:A:G	rs10806039	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.860243221748407	1.9733337139478995	TGAATACCATTGA
chr6	75933857	75933858	chr6:75933858:A:G	rs34689566	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.615253168769533	0.814226006852528	TCAATAATATTCA
chr6	76217635	76217636	chr6:76217636:T:G	rs9343377	T	G	g	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	76366869	76366870	chr6:76366870:T:G	rs2505011	T	G	G	Sox1.mouse_HMG_3	3	1	-	8.201264356121522	6.037099826925097	TCAAAATCATTGT
chr6	76415157	76415158	chr6:76415158:T:C	rs2504979	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	76420449	76420450	chr6:76420450:A:G	rs991761	A	G	G	Sox1.mouse_HMG_3	10	1	-	9.074202290395446	4.4389894945908335	TCACTTTCATTGG
chr6	76435378	76435379	chr6:76435379:T:C	rs1532134	T	C	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	76733507	76733508	chr6:76733508:G:A	rs9447764	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	77559198	77559199	chr6:77559199:T:C	rs1343492	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.452805302528255	1.5658957947277472	ACAATCACATTGA
chr6	77634126	77634127	chr6:77634127:A:C	rs16889263	A	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	77681360	77681361	chr6:77681361:C:T	rs13197085	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	78154047	78154048	chr6:78154048:T:G	rs73475056	T	G	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	78243528	78243529	chr6:78243529:G:A	rs6911371	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	78263483	78263484	chr6:78263484:A:G	rs818249	A	G	G	Sox1.mouse_HMG_3	12	1	+	15.09096645390208	11.802997977578878	TCAATTACATTGA
chr6	78701336	78701337	chr6:78701337:C:T	rs11751263	C	T	C	Sox1.mouse_HMG_3	7	1	+	8.726636720940238	5.094169229845045	TCAATATCATTAT
chr6	79750805	79750806	chr6:79750806:T:C	rs761605	T	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	79802751	79802752	chr6:79802752:A:T	rs72894961	A	T	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr6	79815470	79815471	chr6:79815471:G:A	rs114992634	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	79840298	79840299	chr6:79840299:T:C	rs58131569	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	79894710	79894711	chr6:79894711:C:A	rs16891209	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr6	79949075	79949076	chr6:79949076:A:C	rs1512120	A	C	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	79949100	79949101	chr6:79949101:C:A	rs527950344	C	A	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	80129534	80129535	chr6:80129535:G:T	rs2505932	G	T	t	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	80259384	80259385	chr6:80259385:A:T	rs669420	A	T	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	80464095	80464096	chr6:80464096:G:A	rs584904	G	A	A	Sox1.mouse_HMG_3	6	1	+	4.88859789627557	5.365113835930792	ACAAGTGCATTGA
chr6	80690716	80690717	chr6:80690717:C:G	rs7749684	C	G	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr6	80872353	80872354	chr6:80872354:C:T	rs16892314	C	T	C	Sox1.mouse_HMG_3	8	1	+	6.406576668851221	6.406576668851221	TCAATAACCTTGC
chr6	81238197	81238198	chr6:81238198:C:G	rs9361775	C	G	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	81331697	81331698	chr6:81331698:T:C	rs6914665	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	81367342	81367343	chr6:81367343:A:C	rs1343243	A	C	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	81459661	81459662	chr6:81459662:C:G	rs73749117	C	G	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	81561130	81561131	chr6:81561131:C:T	chr6:81561131:C:T	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr6	81561135	81561136	chr6:81561136:T:A	rs7739492	T	A	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	81714878	81714879	chr6:81714879:A:G	rs194898	A	G	A	Sox1.mouse_HMG_3	9	1	-	11.788693917890216	4.901784410089709	ACAATTGCATTGA
chr6	81810759	81810760	chr6:81810760:A:C	rs1931629	A	C	A	Sox1.mouse_HMG_3	9	1	-	5.198356279491993	1.43028124237946	TCAATGACATTTC
chr6	81838261	81838262	chr6:81838262:A:G	rs574685827	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr6	81845963	81845964	chr6:81845964:C:T	rs6926755	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr6	81969342	81969343	chr6:81969343:A:T	rs10806232	A	T	T	Sox1.mouse_HMG_3	3	1	+	9.891122500110459	3.0900953381934535	TCAAATTCATTGA
chr6	82066308	82066309	chr6:82066309:A:G	rs1984189	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	82401921	82401922	chr6:82401922:C:T	rs4706947	C	T	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	82568316	82568317	chr6:82568317:G:C	rs2917492	G	C	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	82699816	82699817	chr6:82699817:T:C	rs73470767	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	82699998	82699999	chr6:82699999:T:C	rs187315238	T	C	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	82877642	82877643	chr6:82877643:T:C	rs9361982	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.712775352785773	-0.19597942652944722	ACAATGGCATTCA
chr6	83006242	83006243	chr6:83006243:A:C	rs4432957	A	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	83265809	83265810	chr6:83265810:C:T	rs34326691	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	83279141	83279142	chr6:83279142:T:C	rs1145917	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.869210476760051	0.23399768095543716	ACAATGACACTGA
chr6	83417906	83417907	chr6:83417907:T:C	rs11969258	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr6	83479677	83479678	chr6:83479678:A:T	rs4707000	A	T	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr6	84078453	84078454	chr6:84078454:A:T	rs2497142	A	T	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr6	84411813	84411814	chr6:84411814:C:T	rs4706203	C	T	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr6	84448490	84448491	chr6:84448491:A:C	rs9449914	A	C	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	84479465	84479466	chr6:84479466:C:T	rs9353189	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	84645681	84645682	chr6:84645682:C:T	rs6910533	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	84815979	84815980	chr6:84815980:A:G	rs9450046	A	G	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	84977394	84977395	chr6:84977395:G:A	chr6:84977395:G:A	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	84977418	84977419	chr6:84977419:G:C	rs16875388	G	C	G	Sox1.mouse_HMG_3	1	1	-	12.512276815972424	5.6095240286130785	ACAATAGCATTGA
chr6	85097158	85097159	chr6:85097159:G:T	rs116994892	G	T	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	85130168	85130169	chr6:85130169:T:C	rs505007	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr6	85130939	85130940	chr6:85130940:T:A	rs73478387	T	A	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	85361637	85361638	chr6:85361638:A:T	rs140652535	A	T	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	85960495	85960496	chr6:85960496:G:A	rs10455455	G	A	g	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr6	86184019	86184020	chr6:86184020:C:T	rs535139711	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	86466573	86466574	chr6:86466574:G:C	rs192145216	G	C	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	86815680	86815681	chr6:86815681:G:A	rs2180551	G	A	g	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	86962095	86962096	chr6:86962096:A:G	rs78382687	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	87100022	87100023	chr6:87100023:T:A	rs981086	T	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	87106666	87106667	chr6:87106667:T:C	rs181927641	T	C	T	Sox1.mouse_HMG_3	2	1	+	5.603522036657203	5.603522036657203	ACTATAGCATTGA
chr6	87182241	87182242	chr6:87182242:T:C	rs6904310	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	87298702	87298703	chr6:87298703:G:A	rs440296	G	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	87323124	87323125	chr6:87323125:G:C	rs1753154	G	C	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	87323133	87323134	chr6:87323134:C:G	rs60226642	C	G	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr6	87338472	87338473	chr6:87338473:A:G	rs242279	A	G	A	Sox1.mouse_HMG_3	0	1	-	4.633725121504984	-2.218454020588299	TCAATGTCATTTC
chr6	87697591	87697592	chr6:87697592:A:G	rs140521980	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr6	87832561	87832562	chr6:87832562:C:T	rs76691151	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr6	87917689	87917690	chr6:87917690:G:A	rs9444564	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	87974112	87974113	chr6:87974113:T:A	rs2180716	T	A	A	Sox1.mouse_HMG_3	6	1	-	8.90579457266907	8.341163414682061	TCAATAACTTTGA
chr6	88178830	88178831	chr6:88178831:A:C	rs61444148	A	C	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	88483698	88483699	chr6:88483699:G:A	rs7741788	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr6	89080489	89080490	chr6:89080490:G:A	rs2231266	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	89082192	89082193	chr6:89082193:A:T	rs959635893	A	T	A	Sox1.mouse_HMG_3	5	1	-	7.249694021859664	7.973276919941872	TCAATTCAATTGC
chr6	89082211	89082212	chr6:89082212:A:G	rs376349604	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	89323545	89323546	chr6:89323546:T:A	rs73506028	T	A	t	Sox1.mouse_HMG_3	3	1	-	4.391155317234654	-2.4098718446823497	TAAATGACATTGG
chr6	89357995	89357996	chr6:89357996:T:C	rs1782	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	89975927	89975928	chr6:89975928:G:A	rs16882324	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	90005827	90005828	chr6:90005828:C:T	rs752639627	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	90079060	90079061	chr6:90079061:T:C	rs115781566	T	C	T	Sox1.mouse_HMG_3	0	1	+	4.72640634697952	-2.1257727951137655	TCAATGGGATTGC
chr6	90149547	90149548	chr6:90149548:T:C	rs2208039	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	90432675	90432676	chr6:90432676:A:T	rs12194712	A	T	A	Sox1.mouse_HMG_3	12	1	+	15.249918193997281	12.836477151926136	TCAATATCATTGA
chr6	90462955	90462956	chr6:90462956:A:G	rs1144154	A	G	G	Sox1.mouse_HMG_3	5	1	-	7.795342074599086	3.9829375195819003	TCACTTTCATTCA
chr6	90479398	90479399	chr6:90479399:C:T	rs150745969	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	90951114	90951115	chr6:90951115:C:T	rs9451543	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	91743732	91743733	chr6:91743733:A:T	rs549039034	A	T	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	91852803	91852804	chr6:91852804:C:T	rs2454267	C	T	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	91886625	91886626	chr6:91886626:C:T	rs4707704	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	91941571	91941572	chr6:91941572:C:A	rs117859906	C	A	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	92181593	92181594	chr6:92181594:A:G	rs950360	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	92838641	92838642	chr6:92838642:A:G	rs6936761	A	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	93021538	93021539	chr6:93021539:G:A	rs2485806	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr6	93779500	93779501	chr6:93779501:C:T	rs9345396	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr6	94377165	94377166	chr6:94377166:C:T	rs441388	C	T	C	Sox1.mouse_HMG_3	6	1	+	7.630227216426016	7.117149401315546	TCAAGGCCATTGA
chr6	94862652	94862653	chr6:94862653:C:G	chr6:94862653:C:G	C	G	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	94862656	94862657	chr6:94862657:A:T	chr6:94862657:A:T	A	T	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	95885721	95885722	chr6:95885722:C:T	rs2485195	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	96500052	96500053	chr6:96500053:G:A	rs570016657	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	96500097	96500098	chr6:96500098:G:A	rs79036354	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	96610273	96610274	chr6:96610274:T:C	rs9386663	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.2041394745287075	-1.6827700332718003	TCTATTTCATTGT
chr6	96610291	96610292	chr6:96610292:C:T	rs144685052	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	98529524	98529525	chr6:98529525:G:A	rs150267072	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	98590553	98590554	chr6:98590554:G:A	rs12663996	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr6	100171781	100171782	chr6:100171782:A:G	rs6908728	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.385888974653531	-1.522865804661691	TCACTGCCATTCT
chr6	100241488	100241489	chr6:100241489:G:T	rs61068331	G	T	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	100416952	100416953	chr6:100416953:T:C	rs3798499	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	100684491	100684492	chr6:100684492:T:C	rs239195	T	C	T	Sox1.mouse_HMG_3	0	1	-	5.590983848318546	1.5645613025819047	ACAATAACATTAG
chr6	100720562	100720563	chr6:100720563:G:A	rs12194255	G	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr6	101114140	101114141	chr6:101114141:T:C	rs9498521	T	C	C	Sox1.mouse_HMG_3	3	1	-	6.504864967206769	-0.29616219471023664	TCAATATCATCAA
chr6	101542021	101542022	chr6:101542022:G:A	rs148633020	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	102327803	102327804	chr6:102327804:T:C	rs9377354	T	C	c	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	102354002	102354003	chr6:102354003:C:G	rs9390828	C	G	g	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	102798681	102798682	chr6:102798682:G:C	rs529690781	G	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	102848918	102848919	chr6:102848919:G:A	rs72977494	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr6	103190577	103190578	chr6:103190578:A:C	rs485238	A	C	A	Sox1.mouse_HMG_3	3	1	+	4.219028433987917	2.0548639047914925	TCAAAACCTTTGA
chr6	103724054	103724055	chr6:103724055:A:G	rs9377570	A	G	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	104227749	104227750	chr6:104227750:T:C	rs919497491	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	104809108	104809109	chr6:104809109:T:C	rs73768821	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr6	105113608	105113609	chr6:105113609:T:A	rs1981480	T	A	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr6	105158142	105158143	chr6:105158143:T:C	rs768781	T	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	105210474	105210475	chr6:105210475:C:T	rs67107125	C	T	C	Sox1.mouse_HMG_3	6	1	+	9.078190232521036	8.565112417410564	TCACTGCCATTGG
chr6	105210495	105210496	chr6:105210496:A:C	rs67836055	A	C	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	105436725	105436726	chr6:105436726:A:G	rs10440860	A	G	A	Sox1.mouse_HMG_3	2	1	+	6.040289972650561	-0.8684648066646585	TCAATAGCATTTT
chr6	105678600	105678601	chr6:105678601:C:T	rs59363460	C	T	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	105760089	105760090	chr6:105760090:T:C	rs72931525	T	C	T	Sox1.mouse_HMG_3	10	1	+	6.024496348643273	1.3892835528386587	TCAAGAGCATTGT
chr6	105804540	105804541	chr6:105804541:G:A	rs1876556	G	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	105836248	105836249	chr6:105836249:T:G	rs11752904	T	G	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr6	105886606	105886607	chr6:105886607:T:C	rs6926928	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr6	105886833	105886834	chr6:105886834:T:C	rs6931636	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	105901921	105901922	chr6:105901922:A:T	rs76368398	A	T	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	106116360	106116361	chr6:106116361:A:G	rs533733	A	G	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	106148809	106148810	chr6:106148810:G:A	rs9399974	G	A	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	106565970	106565971	chr6:106565971:A:C	rs9486400	A	C	A	Sox1.mouse_HMG_3	0	1	-	4.328189001401499	-2.5239901406917857	TCTCTAACATTGT
chr6	106739650	106739651	chr6:106739651:C:T	rs139738683	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.355445253916955	-0.6028269771966721	TCAATGCCAATGG
chr6	107322215	107322216	chr6:107322216:T:C	rs3002709	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	107552545	107552546	chr6:107552546:A:C	rs77612939	A	C	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	107641265	107641266	chr6:107641266:C:T	rs72945685	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr6	107689370	107689371	chr6:107689371:T:C	rs9372165	T	C	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr6	107768340	107768341	chr6:107768341:T:C	rs9486686	T	C	C	Sox1.mouse_HMG_3	12	1	-	5.143721527512412	1.8557530511892097	TAAATAACAGTGA
chr6	107807620	107807621	chr6:107807621:A:G	rs74943503	A	G	A	Sox1.mouse_HMG_3	10	1	-	10.5753517135565	5.940138917751886	ACAATAACATTGT
chr6	107815575	107815576	chr6:107815576:C:G	rs76638037	C	G	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	107841138	107841139	chr6:107841139:A:G	rs17596103	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	108364511	108364512	chr6:108364512:A:G	rs9398169	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.83682335412669	-1.0719314251885308	TCAAAGACATTAA
chr6	108591997	108591998	chr6:108591998:T:C	rs13220810	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.765895514108529	1.8789860063080215	TCAAAAACATTGT
chr6	108729174	108729175	chr6:108729175:G:T	rs9486940	G	T	g	Sox1.mouse_HMG_3	11	1	+	7.966320139144294	1.082017741536935	TTAATAGCATTGT
chr6	108752262	108752263	chr6:108752263:G:A	rs77794559	G	A	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	108896932	108896933	chr6:108896933:A:G	rs2806370	A	G	G	Sox1.mouse_HMG_3	6	1	+	6.018047145390437	5.541531205735215	TCACTTACCTTGA
chr6	108985759	108985760	chr6:108985760:C:A	rs2145763	C	A	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr6	109059904	109059905	chr6:109059905:A:G	rs565800876	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr6	109059936	109059937	chr6:109059937:A:G	rs79723641	A	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr6	109632062	109632063	chr6:109632063:G:T	rs12215867	G	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	109867923	109867924	chr6:109867924:T:G	rs62437601	T	G	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	109867945	109867946	chr6:109867946:A:G	rs9487241	A	G	G	Sox1.mouse_HMG_3	2	1	+	8.25904235498469	1.3502875756694714	TCAATTTCAGTGC
chr6	110021556	110021557	chr6:110021557:A:G	rs7763290	A	G	G	Sox1.mouse_HMG_3	0	1	-	8.857897031841864	2.005717889748581	TCAATTCCAGTGT
chr6	110391216	110391217	chr6:110391217:A:G	rs6902281	A	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr6	110482333	110482334	chr6:110482334:T:G	rs2494545	T	G	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	110484621	110484622	chr6:110484622:C:A	rs9386904	C	A	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr6	110497643	110497644	chr6:110497644:G:A	rs11153238	G	A	g	Sox1.mouse_HMG_3	11	1	+	4.435527675594072	0.3256872446081731	TCAATAGCAGCGC
chr6	110542498	110542499	chr6:110542499:G:A	rs74444208	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	110629940	110629941	chr6:110629941:T:C	rs12526071	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	111278010	111278011	chr6:111278011:C:T	rs79788276	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	111485148	111485149	chr6:111485149:G:A	rs17510346	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr6	111552207	111552208	chr6:111552208:A:C	rs1039674894	A	C	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	111654515	111654516	chr6:111654516:G:A	rs916378	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	111724479	111724480	chr6:111724480:A:C	rs116204846	A	C	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	111747628	111747629	chr6:111747629:A:G	rs76693641	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	112016440	112016441	chr6:112016441:A:G	rs189540207	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	112087908	112087909	chr6:112087909:T:C	rs149880190	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.216786174354869	-1.6919686049603502	TCAACGCCATTGT
chr6	112124054	112124055	chr6:112124055:C:A	rs11962711	C	A	C	Sox1.mouse_HMG_3	1	1	+	4.1709650425726235	-2.731787744786721	TCAATCCCAGTGG
chr6	112214880	112214881	chr6:112214881:A:G	rs189545465	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr6	112332687	112332688	chr6:112332688:C:T	rs9398305	C	T	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	112406751	112406752	chr6:112406752:C:T	rs950853	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	112442162	112442163	chr6:112442163:A:G	rs9487915	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	112503894	112503895	chr6:112503895:A:T	rs1276553	A	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr6	112692124	112692125	chr6:112692125:G:A	rs12209591	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr6	112880567	112880568	chr6:112880568:A:C	rs6905481	A	C	A	Sox1.mouse_HMG_3	3	1	+	6.462645459236098	4.298480930039673	TCAATACCACTGT
chr6	112939840	112939841	chr6:112939841:G:T	rs2795582	G	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	113122504	113122505	chr6:113122505:T:C	rs2473937	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	113125953	113125954	chr6:113125954:A:G	rs141758798	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	113351325	113351326	chr6:113351326:C:T	rs74842839	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr6	113414964	113414965	chr6:113414965:G:T	rs17075128	G	T	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	113450071	113450072	chr6:113450072:A:G	rs9320456	A	G	A	Sox1.mouse_HMG_3	4	1	-	12.924592370257919	6.024496348643273	TCAATAGCATTGT
chr6	113456640	113456641	chr6:113456641:C:T	rs73765209	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr6	113456655	113456656	chr6:113456656:G:A	rs2142641	G	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	113722943	113722944	chr6:113722944:A:G	rs9488248	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	113764093	113764094	chr6:113764094:T:C	rs550746686	T	C	T	Sox1.mouse_HMG_3	2	1	-	6.745285845521979	-0.16346893379324223	TCACTTACAGTGT
chr6	113846738	113846739	chr6:113846739:A:T	rs4132138	A	T	T	Sox1.mouse_HMG_3	8	1	+	8.914453330369643	2.0056985510544214	TCAAGAACATTGA
chr6	113881777	113881778	chr6:113881778:A:G	rs113177884	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	113901195	113901196	chr6:113901196:A:T	rs2615512	A	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	114328674	114328675	chr6:114328675:C:T	rs12216474	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	114733094	114733095	chr6:114733095:A:G	rs9372406	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	114992592	114992593	chr6:114992593:T:C	rs3932658	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr6	115293438	115293439	chr6:115293439:G:T	rs12196309	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	115702357	115702358	chr6:115702358:C:T	rs9387356	C	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	115901366	115901367	chr6:115901367:T:G	chr6:115901367:T:G	T	G	T	Sox1.mouse_HMG_3	2	1	-	3.962870875927092	-2.945883903388127	TCACAGCCAGTGA
chr6	115956628	115956629	chr6:115956629:G:A	rs17077423	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr6	116279943	116279944	chr6:116279944:C:A	rs987118153	C	A	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	116279946	116279947	chr6:116279947:T:G	chr6:116279947:T:G	T	G	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	116450350	116450351	chr6:116450351:G:T	rs12664607	G	T	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	116568412	116568413	chr6:116568413:T:G	rs980214	T	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	117127863	117127864	chr6:117127864:C:A	rs783372	C	A	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr6	117306125	117306126	chr6:117306126:A:G	rs3798371	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.292254692860492	-1.6078413287541549	TCAATTGCTTTGT
chr6	117426170	117426171	chr6:117426171:G:C	rs72969454	G	C	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	117739987	117739988	chr6:117739988:C:T	chr6:117739988:C:T	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr6	118312459	118312460	chr6:118312460:C:T	rs283050	C	T	T	Sox1.mouse_HMG_3	1	1	+	4.437339657674865	-0.5209325734387604	TCATTTTCATTGG
chr6	118324215	118324216	chr6:118324216:C:T	rs9489341	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.333599982402241	0.22375955141634307	TCAATGCCTTTGG
chr6	118551348	118551349	chr6:118551349:A:G	rs916438853	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr6	118764914	118764915	chr6:118764915:C:T	rs574822436	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr6	119119166	119119167	chr6:119119167:G:C	rs1935819	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	119132172	119132173	chr6:119132173:G:C	rs1891541	G	C	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	119274161	119274162	chr6:119274162:A:G	rs17442478	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	119931138	119931139	chr6:119931139:A:C	rs9372571	A	C	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr6	119978405	119978406	chr6:119978406:A:G	rs74983237	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.572274745425204	-1.2287524164917991	TAAATACCATTGG
chr6	120021052	120021053	chr6:120021053:T:C	rs6933285	T	C	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr6	120021094	120021095	chr6:120021095:G:T	rs6569098	G	T	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	120197538	120197539	chr6:120197539:T:C	rs261771	T	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	120493681	120493682	chr6:120493682:T:C	rs9387801	T	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr6	120493705	120493706	chr6:120493706:A:G	rs113449615	A	G	a	Sox1.mouse_HMG_3	0	1	-	4.540344852597023	-2.3118342894962605	TCACTTCCAGTCA
chr6	120805335	120805336	chr6:120805336:C:T	rs2789074	C	T	T	Sox1.mouse_HMG_3	3	1	+	5.555088651520885	0.9182260188003037	TTACTTACATTGT
chr6	120805404	120805405	chr6:120805405:C:T	rs74659938	C	T	C	Sox1.mouse_HMG_3	6	1	-	6.707551733952878	7.1840676736081	TCAATGGCATTAG
chr6	120971902	120971903	chr6:120971903:T:C	rs9320784	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr6	121081979	121081980	chr6:121081980:T:C	rs77295398	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	121105753	121105754	chr6:121105754:A:G	rs7751291	A	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	121334970	121334971	chr6:121334971:G:A	rs141141160	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	121383262	121383263	chr6:121383263:G:C	rs9490226	G	C	g	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	121443111	121443112	chr6:121443112:A:C	rs10456940	A	C	a	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	121826578	121826579	chr6:121826579:G:A	rs9401454	G	A	G	Sox1.mouse_HMG_3	1	1	-	9.107173544716586	4.148901313602961	TCACTTCCAGTGA
chr6	122129955	122129956	chr6:122129956:C:A	rs80105958	C	A	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	122604852	122604853	chr6:122604853:A:G	chr6:122604853:A:G	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	122617077	122617078	chr6:122617078:G:C	rs9490498	G	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	122701171	122701172	chr6:122701172:T:C	rs7743671	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.190858796778258	-2.7092372248363894	TCACTACCTTTGC
chr6	122714292	122714293	chr6:122714293:G:A	rs9398693	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	122803358	122803359	chr6:122803359:A:G	rs6936183	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	122803386	122803387	chr6:122803387:G:A	rs6936666	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	122846232	122846233	chr6:122846233:A:G	rs12332942	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr6	124123980	124123981	chr6:124123981:C:A	rs76236311	C	A	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	124123994	124123995	chr6:124123995:T:C	rs163297	T	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr6	124357044	124357045	chr6:124357045:C:G	rs534119922	C	G	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	124357053	124357054	chr6:124357054:A:G	rs12529386	A	G	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	124370090	124370091	chr6:124370091:C:T	rs9491140	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr6	124371408	124371409	chr6:124371409:G:A	rs2208814	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	124422755	124422756	chr6:124422756:T:C	rs62436335	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.885941130530872	-2.000968377269636	AGAATTGCATTGA
chr6	124599693	124599694	chr6:124599694:C:G	rs17052134	C	G	C	Sox1.mouse_HMG_3	7	1	+	8.347165406637938	1.467429016173326	TGAATATCATTGA
chr6	124666092	124666093	chr6:124666093:G:A	rs972895	G	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr6	124823682	124823683	chr6:124823683:A:C	rs192027726	A	C	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	124823707	124823708	chr6:124823708:G:A	rs41285244	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr6	124883212	124883213	chr6:124883213:C:T	rs12201921	C	T	T	Sox1.mouse_HMG_3	12	1	+	5.469311789774183	5.555088651520885	TTACTTACATTGC
chr6	124933862	124933863	chr6:124933863:A:G	rs2875743	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	124964474	124964475	chr6:124964475:C:T	rs143153549	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	125220575	125220576	chr6:125220576:A:T	rs1557053	A	T	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	125255374	125255375	chr6:125255375:T:C	rs75688029	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	125700288	125700289	chr6:125700289:A:T	rs926853	A	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	125946839	125946840	chr6:125946840:T:C	rs942061645	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	125985497	125985498	chr6:125985498:G:C	rs7755633	G	C	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	126188395	126188396	chr6:126188396:G:A	rs9491574	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	126188531	126188532	chr6:126188532:A:G	rs9491575	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr6	126336325	126336326	chr6:126336326:A:G	rs4897175	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr6	127198927	127198928	chr6:127198928:C:T	rs75607329	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	127276634	127276635	chr6:127276635:G:C	rs12199451	G	C	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr6	127455893	127455894	chr6:127455894:T:C	rs982306	T	C	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	127483943	127483944	chr6:127483944:A:G	rs1512449	A	G	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	127690305	127690306	chr6:127690306:C:T	chr6:127690306:C:T	C	T	c	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	127690318	127690319	chr6:127690319:C:T	chr6:127690319:C:T	C	T	c	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	127690327	127690328	chr6:127690328:A:G	chr6:127690328:A:G	A	G	a	Sox1.mouse_HMG_3	2	1	+	5.311867091926922	-1.5968876873882987	TCATTTTCATTGT
chr6	127690330	127690331	chr6:127690331:T:C	rs78591248	T	C	t	Sox1.mouse_HMG_3	5	1	+	5.311867091926922	1.4994625369097379	TCATTTTCATTGT
chr6	127932691	127932692	chr6:127932692:T:C	rs1044512983	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	128494704	128494705	chr6:128494705:G:A	rs13196790	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	128507938	128507939	chr6:128507939:T:C	rs6917178	T	C	T	Sox1.mouse_HMG_3	6	1	+	5.714040391616084	6.227118206726555	TTACTATCATTGT
chr6	128507950	128507951	chr6:128507951:T:C	rs6917187	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	128518886	128518887	chr6:128518887:C:A	rs1456357197	C	A	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	128596422	128596423	chr6:128596423:C:G	rs7771701	C	G	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr6	128745381	128745382	chr6:128745382:A:G	rs142050775	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	128933149	128933150	chr6:128933150:C:A	rs13194622	C	A	C	Sox1.mouse_HMG_3	1	1	+	4.609272739797124	-2.2934800475622197	TCCATGTCATTGC
chr6	129089516	129089517	chr6:129089517:A:C	rs6921064	A	C	A	Sox1.mouse_HMG_3	8	1	+	4.899551537641425	-2.0092032416737946	ACAGTTTCATTGA
chr6	129318408	129318409	chr6:129318409:C:T	chr6:129318409:C:T	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	129318411	129318412	chr6:129318412:C:T	rs113995977	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	129526827	129526828	chr6:129526828:A:G	rs2006724	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr6	129710215	129710216	chr6:129710216:C:T	rs558980600	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.249037774088858	0.2907655429752336	TCATTAGCATTGG
chr6	129749170	129749171	chr6:129749171:G:T	rs17057773	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	130112144	130112145	chr6:130112145:G:A	rs9321208	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr6	130309783	130309784	chr6:130309784:T:C	rs73615694	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	130431746	130431747	chr6:130431747:G:A	rs4897423	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	130437977	130437978	chr6:130437978:C:G	rs10456986	C	G	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr6	130598324	130598325	chr6:130598325:A:G	rs145275245	A	G	A	Sox1.mouse_HMG_3	3	1	+	9.20534873786617	2.4043215759491674	ACAATGCCATTGC
chr6	130598326	130598327	chr6:130598327:G:C	rs77437540	G	C	G	Sox1.mouse_HMG_3	5	1	+	9.20534873786617	5.902034055833868	ACAATGCCATTGC
chr6	130670428	130670429	chr6:130670429:A:G	chr6:130670429:A:G	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr6	130783680	130783681	chr6:130783681:T:G	rs9492719	T	G	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	130927547	130927548	chr6:130927548:C:G	rs7738572	C	G	G	Sox1.mouse_HMG_3	11	1	-	6.9065759422022595	2.3397472500826972	TCACTAGCAGTGC
chr6	131281678	131281679	chr6:131281679:G:A	rs34796711	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	131498267	131498268	chr6:131498268:C:T	rs78997368	C	T	c	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	131826475	131826476	chr6:131826476:G:C	rs6917903	G	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr6	131998765	131998766	chr6:131998766:G:A	rs233941	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr6	132053814	132053815	chr6:132053815:A:G	rs191234828	A	G	A	Sox1.mouse_HMG_3	10	1	-	7.065365903753818	2.430153107949203	ACAAATTCATTGA
chr6	132108101	132108102	chr6:132108102:T:C	rs737454	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.570549594585824	-1.3163599132146842	TCACTTGGATTGA
chr6	132198105	132198106	chr6:132198106:A:C	rs4895932	A	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	132286656	132286657	chr6:132286657:G:A	rs11760080	G	A	G	Sox1.mouse_HMG_3	7	1	-	7.496302306458231	3.8638348153630404	TCAATGGCATTAC
chr6	132295514	132295515	chr6:132295515:C:T	rs9493275	C	T	c	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	132323259	132323260	chr6:132323260:T:C	rs17061185	T	C	C	Sox1.mouse_HMG_3	8	1	-	10.081140879911917	3.1723861005966976	TTAATTCCATTGA
chr6	132333691	132333692	chr6:132333692:C:T	rs11968833	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr6	132728833	132728834	chr6:132728834:G:A	rs45553436	G	A	G	Sox1.mouse_HMG_3	5	1	+	9.441978208247704	10.674650979314793	TCACTGGCATTGC
chr6	132758654	132758655	chr6:132758655:C:T	rs6911025	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	132814693	132814694	chr6:132814694:A:G	rs888345218	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr6	132814724	132814725	chr6:132814725:T:G	rs12202302	T	G	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	132867309	132867310	chr6:132867310:A:G	rs12203738	A	G	A	Sox1.mouse_HMG_3	0	1	+	7.678853486904318	3.652430941167677	ACAATTGCATTAA
chr6	132867332	132867333	chr6:132867333:A:G	rs4448124	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr6	133040227	133040228	chr6:133040228:C:T	rs184222634	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.809112390745449	5.894889252492151	TCACTACAATTGC
chr6	133092468	133092469	chr6:133092469:G:A	rs78121991	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	133528650	133528651	chr6:133528651:A:G	rs3822939	A	G	G	Sox1.mouse_HMG_3	10	1	-	6.5501776420355675	1.9149648462309528	TCACAACCATTGT
chr6	133741312	133741313	chr6:133741313:A:C	rs74379084	A	C	A	Sox1.mouse_HMG_3	2	1	+	4.385153325278779	-2.5236014540364415	TCAATGACTTTGG
chr6	133788706	133788707	chr6:133788707:A:G	chr6:133788707:A:G	A	G	a	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	133972117	133972118	chr6:133972118:G:A	rs74393117	G	A	G	Sox1.mouse_HMG_3	7	1	-	7.629997061740825	3.9975295706456335	ACAAATACATTGA
chr6	134382089	134382090	chr6:134382090:A:G	rs78156561	A	G	A	Sox1.mouse_HMG_3	4	1	-	8.744201778859892	1.8441057572452435	ACAATAGCAGTGA
chr6	134939164	134939165	chr6:134939165:T:C	rs7754722	T	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	135217453	135217454	chr6:135217454:G:A	rs2179308	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	135498598	135498599	chr6:135498599:A:G	rs185970600	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr6	135498604	135498605	chr6:135498605:T:A	rs1331544429	T	A	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	135600433	135600434	chr6:135600434:C:T	rs114986612	C	T	c	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	135780783	135780784	chr6:135780784:C:G	rs6923513	C	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	135901868	135901869	chr6:135901869:T:A	rs75358787	T	A	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr6	135901897	135901898	chr6:135901898:C:A	rs75803662	C	A	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	136117272	136117273	chr6:136117273:A:T	rs923851846	A	T	A	Sox1.mouse_HMG_3	6	1	+	6.414207735650361	5.849576577663353	TCAATAAAATTAA
chr6	136181488	136181489	chr6:136181489:C:T	rs9402793	C	T	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	136786459	136786460	chr6:136786460:G:A	rs6570102	G	A	g	Sox1.mouse_HMG_3	1	1	-	5.0818746801367976	0.12360244902317308	TCAATACTATCGT
chr6	137233841	137233842	chr6:137233842:C:T	rs73561906	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.623828088301742	1.5139876573158446	TAAATAACATTGG
chr6	137351711	137351712	chr6:137351712:C:A	rs9373187	C	A	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	137402406	137402407	chr6:137402407:A:T	rs6912317	A	T	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	137427711	137427712	chr6:137427712:A:G	rs6929588	A	G	G	Sox1.mouse_HMG_3	4	1	-	5.216786174354869	-1.6833098472597776	TCAATGCCATGGT
chr6	137427724	137427725	chr6:137427725:T:C	rs115177216	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	137452528	137452529	chr6:137452529:C:T	rs6570160	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr6	137487649	137487650	chr6:137487650:G:A	rs734669	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	137487663	137487664	chr6:137487664:C:A	rs742241	C	A	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr6	137869678	137869679	chr6:137869679:C:G	rs5029931	C	G	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	137912395	137912396	chr6:137912396:A:G	rs145866478	A	G	G	Sox1.mouse_HMG_3	9	1	-	11.458498962806887	4.571589455006382	TCAATTATATTGA
chr6	138219600	138219601	chr6:138219601:A:G	rs17067263	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	138439734	138439735	chr6:138439735:C:T	rs115108474	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	138480647	138480648	chr6:138480648:T:G	rs181532138	T	G	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	138480660	138480661	chr6:138480661:G:A	rs76618647	G	A	A	Sox1.mouse_HMG_3	11	1	+	10.37976118121544	6.2699207502295415	TTAATAGCATTGA
chr6	138544810	138544811	chr6:138544811:T:C	rs9399244	T	C	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	138691162	138691163	chr6:138691163:A:G	rs76293003	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.004556938702574	-1.904197840612646	TCACTCACATTAA
chr6	138943792	138943793	chr6:138943793:T:G	rs6899737	T	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	139155209	139155210	chr6:139155210:C:T	rs9403046	C	T	T	Sox1.mouse_HMG_3	5	1	-	5.214129408610173	6.446802179677261	TAAATGCCATTGT
chr6	139241302	139241303	chr6:139241303:G:C	rs10499208	G	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr6	139282772	139282773	chr6:139282773:G:A	chr6:139282773:G:A	G	A	g	Sox1.mouse_HMG_3	3	1	-	5.2832813520983155	0.6464187193777329	TCACTGACATCGC
chr6	139373287	139373288	chr6:139373288:G:A	rs138728110	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr6	139392951	139392952	chr6:139392952:C:T	rs149457220	C	T	C	Sox1.mouse_HMG_3	9	1	+	5.7048390422837265	12.591748550084231	TCAATTACACTGC
chr6	139406721	139406722	chr6:139406722:T:C	rs74539375	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	139494659	139494660	chr6:139494660:G:A	rs9389690	G	A	G	Sox1.mouse_HMG_3	9	1	+	6.117825369696906	2.9989908990089327	TCACTAGCAGTGG
chr6	139494670	139494671	chr6:139494671:A:T	rs9403082	A	T	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr6	139501184	139501185	chr6:139501185:A:G	rs62440903	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.446802179677261	-0.4401073281232468	TAAATACCATTGT
chr6	139501189	139501190	chr6:139501190:A:G	rs4895563	A	G	A	Sox1.mouse_HMG_3	4	1	-	6.446802179677261	-0.45329384193738576	TAAATACCATTGT
chr6	139595586	139595587	chr6:139595587:G:T	rs9495535	G	T	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr6	139638667	139638668	chr6:139638668:T:C	rs6940157	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	139760010	139760011	chr6:139760011:A:G	rs9373247	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.035449990009129	-0.8514595177913782	TCATTATCATTGT
chr6	139764157	139764158	chr6:139764158:T:C	rs7774968	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr6	139847203	139847204	chr6:139847204:G:A	rs17811355	G	A	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	139847206	139847207	chr6:139847207:G:A	rs192664048	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	139847211	139847212	chr6:139847212:G:T	rs113145126	G	T	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	139925995	139925996	chr6:139925996:G:A	rs138527254	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	139965098	139965099	chr6:139965099:A:C	rs596878	A	C	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	140031508	140031509	chr6:140031509:T:C	rs56030520	T	C	C	Sox1.mouse_HMG_3	2	1	-	5.936381130311489	-0.9723736490037325	TCAATATCATAGT
chr6	140043349	140043350	chr6:140043350:T:C	rs76572920	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr6	140264585	140264586	chr6:140264586:T:G	rs9389777	T	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr6	140541642	140541643	chr6:140541643:G:C	chr6:140541643:G:C	G	C	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	141168290	141168291	chr6:141168291:G:T	rs62429885	G	T	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	141395585	141395586	chr6:141395586:T:C	rs2105047	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	142275719	142275720	chr6:142275720:G:A	rs9484608	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr6	142320418	142320419	chr6:142320419:A:G	rs9385993	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr6	142705621	142705622	chr6:142705622:C:T	rs111516269	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	142907503	142907504	chr6:142907504:A:T	rs9403420	A	T	A	Sox1.mouse_HMG_3	8	1	+	4.570135942061558	-2.3386188372536623	ACAAAGCCATTGC
chr6	143079530	143079531	chr6:143079531:A:G	rs9386021	A	G	G	Sox1.mouse_HMG_3	9	1	-	11.227008556008359	4.340099048207852	TCAATCCCATTGA
chr6	143345294	143345295	chr6:143345295:A:T	rs6932294	A	T	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	143427224	143427225	chr6:143427225:T:C	chr6:143427225:T:C	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.199163261608028	0.5639504658034142	ACAATTACATTCC
chr6	143578498	143578499	chr6:143578499:C:T	rs6919613	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	143630729	143630730	chr6:143630730:A:C	rs7741506	A	C	A	Sox1.mouse_HMG_3	2	1	+	4.820264244076661	-2.088490535238558	ACAATGCCATTTA
chr6	143949780	143949781	chr6:143949781:T:G	rs76015148	T	G	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	144021084	144021085	chr6:144021085:C:A	rs77516841	C	A	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	144131433	144131434	chr6:144131434:A:C	rs4463275	A	C	A	Sox1.mouse_HMG_3	5	1	-	8.729703275623457	8.220613402638577	TCACTTTTATTGA
chr6	144222048	144222049	chr6:144222049:G:A	rs4895636	G	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr6	144278738	144278739	chr6:144278739:G:A	rs664721	G	A	A	Sox1.mouse_HMG_3	3	1	+	4.37830939426267	11.179336556179674	TCAGAAACATTGA
chr6	144334577	144334578	chr6:144334578:C:A	chr6:144334578:C:A	C	A	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	144719006	144719007	chr6:144719007:A:G	rs75376745	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr6	144954093	144954094	chr6:144954094:G:A	rs9390264	G	A	A	Sox1.mouse_HMG_3	6	1	+	6.970929941639515	7.447445881294739	TCAAAGGCATTGC
chr6	145148027	145148028	chr6:145148028:A:G	rs75103199	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.514688957707893	-1.3854070639067535	ACACTTGCATTAA
chr6	145404681	145404682	chr6:145404682:A:G	rs4243477	A	G	A	Sox1.mouse_HMG_3	5	1	+	6.5010122882984955	5.268339517231407	TCAACAACATTGT
chr6	145830093	145830094	chr6:145830094:A:T	rs6570723	A	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr6	146363927	146363928	chr6:146363928:T:A	rs2252798	T	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr6	146665210	146665211	chr6:146665211:A:G	rs117678649	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr6	146680272	146680273	chr6:146680273:G:A	rs1417588	G	A	G	Sox1.mouse_HMG_3	1	1	-	8.437937390714419	3.479665159600794	TCAACAGCATTGA
chr6	146895415	146895416	chr6:146895416:T:A	rs2224906	T	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	147063612	147063613	chr6:147063613:A:G	rs17076616	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	147528904	147528905	chr6:147528905:T:C	rs77628336	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.136212250834104	-0.7506972569664041	ACAGTACCATTGA
chr6	147584530	147584531	chr6:147584531:C:T	rs373130391	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	148039146	148039147	chr6:148039147:C:T	rs9386207	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	148039153	148039154	chr6:148039154:A:G	rs1524896	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	148192624	148192625	chr6:148192625:T:G	rs9497963	T	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr6	148235718	148235719	chr6:148235719:T:A	rs9497977	T	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr6	148345790	148345791	chr6:148345791:C:T	rs6911789	C	T	C	Sox1.mouse_HMG_3	10	1	-	4.336847759102071	4.336847759102071	TCACTAACATGGT
chr6	148345819	148345820	chr6:148345820:T:C	rs6934632	T	C	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	148423469	148423470	chr6:148423470:C:T	rs114795033	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	148445121	148445122	chr6:148445122:C:T	rs6904408	C	T	C	Sox1.mouse_HMG_3	10	1	+	5.227740067096187	9.8629528629008	TCACTTTCATCGC
chr6	148578268	148578269	chr6:148578269:C:A	rs35404037	C	A	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr6	148593157	148593158	chr6:148593158:C:T	rs9498066	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	148913134	148913135	chr6:148913135:T:G	rs9399670	T	G	G	Sox1.mouse_HMG_3	3	1	-	4.753963595350847	2.5897990661544212	CCAATGGCATTGC
chr6	148919256	148919257	chr6:148919257:G:A	rs12201109	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	148950117	148950118	chr6:148950118:T:G	rs2500511	T	G	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	148981820	148981821	chr6:148981821:A:G	rs9498185	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr6	149065819	149065820	chr6:149065820:G:A	rs10872630	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr6	149076388	149076389	chr6:149076389:T:C	rs78956649	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	149108309	149108310	chr6:149108310:G:T	rs12216011	G	T	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr6	149206531	149206532	chr6:149206532:C:A	rs607071	C	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	149289633	149289634	chr6:149289634:C:T	rs76305607	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	149314663	149314664	chr6:149314664:T:C	rs201641387	T	C	t	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr6	149335043	149335044	chr6:149335044:C:T	rs182281354	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	149364576	149364577	chr6:149364577:G:C	rs10155766	G	C	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	149444010	149444011	chr6:149444011:T:A	rs57485886	T	A	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	149457065	149457066	chr6:149457066:A:G	rs2744430	A	G	A	Sox1.mouse_HMG_3	2	1	+	7.639425788114567	0.730671008799346	TCAATTTCACTGA
chr6	149887609	149887610	chr6:149887610:A:T	rs79782857	A	T	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr6	150050998	150050999	chr6:150050999:C:T	rs12192777	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	150051020	150051021	chr6:150051021:G:T	rs9479529	G	T	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	150154166	150154167	chr6:150154167:G:T	rs7738204	G	T	T	Sox1.mouse_HMG_3	12	1	+	5.019903144411677	5.894430578663734	TCACTGACATTAG
chr6	150273226	150273227	chr6:150273227:T:C	rs789481	T	C	C	Sox1.mouse_HMG_3	4	1	+	9.924943693822788	3.0248476722081423	ACAATATCATTGC
chr6	150274001	150274002	chr6:150274002:A:C	chr6:150274002:A:C	A	C	A	Sox1.mouse_HMG_3	2	1	+	4.488243240745808	-2.4205115385694116	TCACTGCCAGTAA
chr6	150404272	150404273	chr6:150404273:T:C	rs115817957	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	150668991	150668992	chr6:150668992:A:G	rs185172259	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.208127416654298	-1.7006273626609232	TCCATGCCATTGT
chr6	150720215	150720216	chr6:150720216:C:T	rs9383542	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr6	150807053	150807054	chr6:150807054:T:G	rs6908190	T	G	G	Sox1.mouse_HMG_3	12	1	-	5.712899490971386	3.213681587153537	ACACAAGCATTGA
chr6	150987686	150987687	chr6:150987687:C:T	rs79186450	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr6	150987718	150987719	chr6:150987719:A:G	rs9397372	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	151015176	151015177	chr6:151015177:T:G	rs6910091	T	G	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr6	151046241	151046242	chr6:151046242:C:A	rs13195153	C	A	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	151242436	151242437	chr6:151242437:A:G	rs11967057	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	151242439	151242440	chr6:151242440:A:G	rs6557123	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr6	151273428	151273429	chr6:151273429:A:G	rs2257102	A	G	G	Sox1.mouse_HMG_3	2	1	+	4.4719607489119735	-2.4367940304032465	TCACATCCAGTGA
chr6	151276505	151276506	chr6:151276506:G:C	rs56827614	G	C	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr6	151299453	151299454	chr6:151299454:A:G	rs9383565	A	G	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	152096006	152096007	chr6:152096007:G:A	rs9341056	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	152335169	152335170	chr6:152335170:G:T	rs1999830	G	T	T	Sox1.mouse_HMG_3	11	1	+	6.563626122994085	-0.32067627461327364	TCACTCCCATTGC
chr6	152458578	152458579	chr6:152458579:G:C	rs214962	G	C	C	Sox1.mouse_HMG_3	12	1	-	5.585787952803386	4.797037380298033	TCACTGTCAGTGC
chr6	152458797	152458798	chr6:152458798:G:A	rs34610829	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	152876314	152876315	chr6:152876315:T:C	rs852649	T	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	152933058	152933059	chr6:152933059:T:C	rs6915028	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	153027572	153027573	chr6:153027573:A:G	rs598662	A	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	153044548	153044549	chr6:153044549:C:T	rs150672936	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	153139973	153139974	chr6:153139974:T:C	rs635023	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	153166908	153166909	chr6:153166909:T:C	rs12203312	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	154056705	154056706	chr6:154056706:G:A	rs477589	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr6	154062522	154062523	chr6:154062523:T:C	rs3778150	T	C	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	154348493	154348494	chr6:154348494:G:A	rs2038155	G	A	A	Sox1.mouse_HMG_3	9	1	+	5.8881032460207	2.7692687753327254	TTAATTGCAGTGA
chr6	154392685	154392686	chr6:154392686:T:C	rs11758486	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr6	154435645	154435646	chr6:154435646:C:T	rs72995423	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr6	154435656	154435657	chr6:154435657:T:C	rs72995424	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.631440427892477	-1.2773143514227454	TCCATTCCATTGC
chr6	154644702	154644703	chr6:154644703:T:C	rs1402572	T	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	155083495	155083496	chr6:155083496:T:C	rs1889489	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.953587398710406	-0.9551673806048144	ACAATCACATTGC
chr6	155120875	155120876	chr6:155120876:T:C	rs2062409	T	C	C	Sox1.mouse_HMG_3	8	1	-	4.4227953951749015	-2.4859593841403185	TCAACTACAGTGA
chr6	155205081	155205082	chr6:155205082:G:C	rs9397788	G	C	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr6	155223262	155223263	chr6:155223263:T:C	rs4143683	T	C	C	Sox1.mouse_HMG_3	3	1	-	8.072241429903197	1.2712142679861933	TCAATAATATTAA
chr6	155260154	155260155	chr6:155260155:C:A	rs4869849	C	A	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	155282062	155282063	chr6:155282063:T:C	rs324349	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	155375579	155375580	chr6:155375580:A:G	rs9397246	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.393812082979352	-2.5062839386352964	TCAATGACATGGG
chr6	155862012	155862013	chr6:155862013:C:T	rs4463267	C	T	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr6	156376546	156376547	chr6:156376547:T:G	rs1377973	T	G	T	Sox1.mouse_HMG_3	8	1	-	9.891122500110459	2.9823677207952395	TCAAATTCATTGA
chr6	156516320	156516321	chr6:156516321:T:C	rs117577781	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	156619316	156619317	chr6:156619317:T:C	rs2817438	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr6	156868621	156868622	chr6:156868622:A:T	rs12213563	A	T	A	Sox1.mouse_HMG_3	2	1	+	4.395140155071182	-2.513614624244037	TCAGTACCATTCA
chr6	156976824	156976825	chr6:156976825:A:G	rs41487150	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	157089233	157089234	chr6:157089234:A:G	rs77476846	A	G	A	Sox1.mouse_HMG_3	11	1	-	8.206664056294722	10.524137761782518	TCAATTACATTTA
chr6	157089406	157089407	chr6:157089407:A:G	rs17088104	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	157330001	157330002	chr6:157330002:C:T	rs79964909	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr6	157432626	157432627	chr6:157432627:T:C	rs17165322	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr6	157540670	157540671	chr6:157540671:A:G	rs4349836	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	157598397	157598398	chr6:157598398:C:G	rs17447588	C	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr6	157740012	157740013	chr6:157740013:G:A	rs656405	G	A	-	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr6	157807103	157807104	chr6:157807104:T:C	rs6918449	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	157824061	157824062	chr6:157824062:A:G	chr6:157824062:A:G	A	G	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr6	158073535	158073536	chr6:158073536:G:A	rs9459298	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr6	158356482	158356483	chr6:158356483:G:A	rs9457363	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	158707046	158707047	chr6:158707047:A:C	rs7774622	A	C	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr6	158874306	158874307	chr6:158874307:T:C	rs10945568	T	C	c	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr6	158972178	158972179	chr6:158972179:G:A	rs2235823	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	158978969	158978970	chr6:158978970:T:A	rs767378346	T	A	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr6	159291767	159291768	chr6:159291768:A:G	rs2340803	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr6	159291815	159291816	chr6:159291816:A:G	rs2879864	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	159360084	159360085	chr6:159360085:A:G	rs7753342	A	G	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	159557750	159557751	chr6:159557751:A:T	rs240892	A	T	T	Sox1.mouse_HMG_3	9	1	-	6.176998885485636	-0.7099106223148712	TCTCTATCATTGA
chr6	159607036	159607037	chr6:159607037:A:G	rs76676974	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.221064325066049	-0.6658451827344585	TTAAAAACATTGA
chr6	159778993	159778994	chr6:159778994:A:C	rs4832	A	C	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr6	159844390	159844391	chr6:159844391:T:C	rs9365101	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr6	160050158	160050159	chr6:160050159:T:G	rs8191818	T	G	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	160138315	160138316	chr6:160138316:C:T	rs117010682	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr6	160146895	160146896	chr6:160146896:G:T	rs3798167	G	T	G	Sox1.mouse_HMG_3	11	1	+	9.800215472597756	2.915913074990397	ACAATTCCATTGT
chr6	160215530	160215531	chr6:160215531:G:A	rs610206	G	A	g	Sox1.mouse_HMG_3	8	1	+	5.682993770769013	12.591748550084231	TCAATTACGTTGC
chr6	160272694	160272695	chr6:160272695:A:G	rs599507	A	G	G	Sox1.mouse_HMG_3	10	1	-	6.018047145390437	1.382834349585823	TCTCTTACATTGA
chr6	160272703	160272704	chr6:160272704:G:C	rs599494	G	C	G	Sox1.mouse_HMG_3	1	1	-	6.018047145390437	-0.8847056419689063	TCTCTTACATTGA
chr6	160279866	160279867	chr6:160279867:T:C	rs604258	T	C	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr6	160427134	160427135	chr6:160427135:A:C	rs2665357	A	C	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	160436282	160436283	chr6:160436283:T:C	rs1567442	T	C	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	160988354	160988355	chr6:160988355:T:C	rs602837	T	C	C	Sox1.mouse_HMG_3	4	1	-	4.952067309701304	2.6871840838912706	TCACATCCATTGG
chr6	161234963	161234964	chr6:161234964:A:G	rs6455710	A	G	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr6	161523738	161523739	chr6:161523739:A:G	rs518666	A	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	161656398	161656399	chr6:161656399:C:T	rs12206076	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr6	161832667	161832668	chr6:161832668:G:A	rs11962503	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	161856351	161856352	chr6:161856352:T:C	rs6931778	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr6	161889463	161889464	chr6:161889464:A:G	rs9355950	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.970929941639515	0.06217516232429543	TCAAAGGCATTGC
chr6	162086842	162086843	chr6:162086843:T:C	rs1893550	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr6	162156225	162156226	chr6:162156226:C:T	rs2849609	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr6	162268260	162268261	chr6:162268261:G:T	rs778527011	G	T	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	162556824	162556825	chr6:162556825:C:T	rs79575917	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr6	162750763	162750764	chr6:162750764:T:G	rs4568424	T	G	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	163182863	163182864	chr6:163182864:A:G	rs10806772	A	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr6	163326507	163326508	chr6:163326508:T:C	rs2321513	T	C	C	Sox1.mouse_HMG_3	10	1	+	9.078190232521036	4.442977436716424	TCACTGCCATTGG
chr6	163367968	163367969	chr6:163367969:C:G	chr6:163367969:C:G	C	G	C	Sox1.mouse_HMG_3	1	1	+	9.450416730810629	2.5476639434512856	TCAATGTCATTCA
chr6	163381348	163381349	chr6:163381349:A:G	rs1764015	A	G	G	Sox1.mouse_HMG_3	8	1	+	5.517616030106131	-1.3911387492090905	TCACTGACATGGA
chr6	163422662	163422663	chr6:163422663:A:G	rs572909792	A	G	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr6	163599854	163599855	chr6:163599855:A:C	rs35462626	A	C	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr6	164008967	164008968	chr6:164008968:G:A	rs75607497	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr6	164131916	164131917	chr6:164131917:T:C	rs58778525	T	C	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	164150883	164150884	chr6:164150884:T:C	rs78794252	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr6	164300913	164300914	chr6:164300914:G:A	rs7759775	G	A	G	Sox1.mouse_HMG_3	5	1	+	5.259680759530836	6.4923535305979225	TCCATGACATTGT
chr6	164345683	164345684	chr6:164345684:A:G	rs6930276	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	164698301	164698302	chr6:164698302:C:T	rs916921786	C	T	c	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr6	164709922	164709923	chr6:164709923:A:G	rs10946017	A	G	G	Sox1.mouse_HMG_3	0	1	+	5.823880418251601	1.7974578725149597	ACACTGACAGTGA
chr6	164892120	164892121	chr6:164892121:C:T	rs11752832	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr6	164908922	164908923	chr6:164908923:T:C	rs1285086031	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr6	165544079	165544080	chr6:165544080:T:G	rs73786630	T	G	T	Sox1.mouse_HMG_3	12	1	-	5.541531205735215	3.0423133019173654	TCACTTGCTTTGA
chr6	165782323	165782324	chr6:165782324:G:A	rs80022405	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr6	165782335	165782336	chr6:165782336:C:T	rs117444502	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr6	165783750	165783751	chr6:165783751:A:G	rs9364815	A	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr6	165890321	165890322	chr6:165890322:C:A	rs11754381	C	A	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr6	165890347	165890348	chr6:165890348:T:C	rs9365935	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr6	165922234	165922235	chr6:165922235:G:A	rs75340726	G	A	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	166244286	166244287	chr6:166244287:G:A	rs4710030	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr6	166508552	166508553	chr6:166508553:A:G	rs411281	A	G	G	Sox1.mouse_HMG_3	12	1	-	5.717217289639178	5.631440427892475	TCAATTCCTTTGT
chr6	166942365	166942366	chr6:166942366:T:C	rs2769339	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.34591322711157	-0.5628415522036505	TCAAATACATTAA
chr6	167114543	167114544	chr6:167114544:G:T	rs6456158	G	T	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	167284618	167284619	chr6:167284619:A:C	rs9457295	A	C	a	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr6	167298445	167298446	chr6:167298446:T:C	rs3010546	T	C	-	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr6	167704860	167704861	chr6:167704861:C:A	rs145037242	C	A	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	167744325	167744326	chr6:167744326:C:A	rs536677	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr6	167777385	167777386	chr6:167777386:A:C	rs151314912	A	C	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr6	168005148	168005149	chr6:168005149:A:G	rs7773670	A	G	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	168031412	168031413	chr6:168031413:T:G	rs9364386	T	G	T	Sox1.mouse_HMG_3	0	1	+	5.078572711865663	-1.773606430227623	TTACTTGCATTGT
chr6	168031423	168031424	chr6:168031424:G:A	rs142487614	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.078572711865663	0.968732280879764	TTACTTGCATTGT
chr6	168149833	168149834	chr6:168149834:A:T	rs6455490	A	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr6	168149844	168149845	chr6:168149845:A:G	rs6929011	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr6	168214945	168214946	chr6:168214946:C:T	rs73790409	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr6	168390751	168390752	chr6:168390752:T:G	rs4524581	T	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr6	168687342	168687343	chr6:168687343:G:A	rs613728	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr6	168708783	168708784	chr6:168708784:T:C	rs686357	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr6	168711725	168711726	chr6:168711726:C:A	rs599295	C	A	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr6	168711732	168711733	chr6:168711733:C:T	rs612157	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	168742344	168742345	chr6:168742345:G:C	rs183791724	G	C	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr6	168989075	168989076	chr6:168989076:A:C	rs77665013	A	C	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr6	169071175	169071176	chr6:169071176:G:A	rs9689923	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr6	169071190	169071191	chr6:169071191:A:G	rs116239143	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr6	169083710	169083711	chr6:169083711:A:G	rs113301269	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr6	169099363	169099364	chr6:169099364:T:C	rs9346617	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.669862353601886	-2.1311648083151185	TCAAGAGCAGTGA
chr6	169345614	169345615	chr6:169345615:T:G	rs73034131	T	G	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr6	169376424	169376425	chr6:169376425:T:C	rs4716370	T	C	C	Sox1.mouse_HMG_3	4	1	+	7.621568458725443	0.7214724371107961	TCAATGCCCTTGA
chr6	169581713	169581714	chr6:169581714:C:T	rs9295014	C	T	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr6	169581742	169581743	chr6:169581743:G:A	rs73790036	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr6	169647520	169647521	chr6:169647521:T:G	rs35741390	T	G	T	Sox1.mouse_HMG_3	12	1	-	4.770581050215496	2.2713631463976465	TCACTAGCAGCGA
chr6	169722957	169722958	chr6:169722958:T:C	rs185351411	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.916976350715494	1.0300668429149862	TTACTTCCATTGA
chr6	169768554	169768555	chr6:169768555:A:G	rs4716395	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.014651237804509	-1.7863759241124968	TCAATACCAGTCT
chr6	169881703	169881704	chr6:169881704:G:A	rs925920792	G	A	g	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr6	169921271	169921272	chr6:169921272:G:A	rs909538100	G	A	-	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr6	169921300	169921301	chr6:169921301:C:T	rs1041568390	C	T	c	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr6	169923433	169923434	chr6:169923434:C:T	rs879088426	C	T	c	Sox1.mouse_HMG_3	6	1	+	6.034486625391764	5.521408810281294	AGAATACCATTGA
chr6	170002483	170002484	chr6:170002484:C:A	rs943881130	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr6	170076933	170076934	chr6:170076934:G:A	rs148476726	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr6	170408332	170408333	chr6:170408333:A:G	rs926221	A	G	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	376995	376996	chr7:376996:G:A	rs146197992	G	A	N	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	506876	506877	chr7:506877:A:C	rs4074396	A	C	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr7	625445	625446	chr7:625446:A:G	rs150687728	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr7	666984	666985	chr7:666985:A:C	rs897967352	A	C	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	693537	693538	chr7:693538:A:G	rs73047920	A	G	a	Sox1.mouse_HMG_3	8	1	+	5.332137777261806	-1.5766170020534132	TCACTGGCATTAC
chr7	920812	920813	chr7:920813:C:T	rs3808343	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	1000890	1000891	chr7:1000891:G:A	rs112650357	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	1060564	1060565	chr7:1060565:A:G	rs73048394	A	G	a	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	1112249	1112250	chr7:1112250:G:T	rs10270249	G	T	G	Sox1.mouse_HMG_3	3	1	-	5.466062687229593	7.630227216426016	TCACTGCCATGGA
chr7	1742906	1742907	chr7:1742907:G:A	rs138962782	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	1983083	1983084	chr7:1983084:G:A	rs118013978	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	2039345	2039346	chr7:2039346:C:T	rs56226325	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	2354657	2354658	chr7:2354658:C:G	rs569784120	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	2354660	2354661	chr7:2354661:C:T	rs2301942	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	2354680	2354681	chr7:2354681:C:G	rs2301943	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	2354696	2354697	chr7:2354697:A:T	rs77477547	A	T	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	2512090	2512091	chr7:2512091:G:A	rs80006756	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	2571777	2571778	chr7:2571778:G:A	rs11772879	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr7	2759828	2759829	chr7:2759829:G:T	rs77925799	G	T	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr7	2759835	2759836	chr7:2759836:G:A	rs141690815	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	2759844	2759845	chr7:2759845:C:T	rs150502471	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.68832088654983	0.5784804555639314	ACAATCGCATTGG
chr7	2760434	2760435	chr7:2760435:C:T	rs17132655	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	3007216	3007217	chr7:3007217:T:C	rs1968923	T	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	3007232	3007233	chr7:3007233:G:A	rs74555857	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.041100090450907	0.08282785933728065	TCACTGGCATGGA
chr7	3064968	3064969	chr7:3064969:T:C	rs1965950	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	3112428	3112429	chr7:3112429:G:A	rs78277630	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	3222135	3222136	chr7:3222136:C:A	rs7789178	C	A	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr7	3244505	3244506	chr7:3244506:T:C	rs10452788	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr7	3673111	3673112	chr7:3673112:C:T	rs55906803	C	T	c	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	3851656	3851657	chr7:3851657:G:T	rs12532912	G	T	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr7	3965251	3965252	chr7:3965252:T:C	rs10277771	T	C	C	Sox1.mouse_HMG_3	10	1	+	4.3625832945977905	-0.2726295012068227	TCCATTCCAGTGA
chr7	3993928	3993929	chr7:3993929:A:G	rs1025915	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.93871948689657	-0.9481900209039373	TCAAGAGCATTGC
chr7	4023094	4023095	chr7:4023095:A:G	rs10228937	A	G	G	Sox1.mouse_HMG_3	8	1	+	4.3427061584010005	-2.5660486209142204	TCAATCCCATTTA
chr7	5167438	5167439	chr7:5167439:T:C	rs6463300	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr7	5694325	5694326	chr7:5694326:A:G	rs139723150	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.521408810281294	0.8861960144766794	AGAATATCATTGA
chr7	6020986	6020987	chr7:6020987:A:C	rs2345055	A	C	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	6378643	6378644	chr7:6378644:T:C	rs7784465	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr7	6618923	6618924	chr7:6618924:A:G	rs2248342	A	G	g	Sox1.mouse_HMG_3	10	1	-	6.303986979040932	1.668774183236318	ACACTGACATTGG
chr7	6659273	6659274	chr7:6659274:C:A	rs872424	C	A	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	6675132	6675133	chr7:6675133:G:A	rs114404778	G	A	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	6950698	6950699	chr7:6950699:A:G	rs4318979	A	G	.	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr7	7103253	7103254	chr7:7103254:A:C	rs115338058	A	C	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	7229162	7229163	chr7:7229163:A:G	rs12539501	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	7276349	7276350	chr7:7276350:G:C	chr7:7276350:G:C	G	C	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr7	7321852	7321853	chr7:7321853:A:G	rs17506507	A	G	A	Sox1.mouse_HMG_3	3	1	-	4.955092822643554	9.591955455364134	ACATTGACATTGA
chr7	7565014	7565015	chr7:7565015:C:T	rs115300490	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	7565024	7565025	chr7:7565025:G:A	rs972600	G	A	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	7682014	7682015	chr7:7682015:A:C	rs62432580	A	C	A	Sox1.mouse_HMG_3	2	1	+	7.604476289621527	0.6957215103063061	TCACTAATATTGT
chr7	7817221	7817222	chr7:7817222:C:G	rs6957893	C	G	C	Sox1.mouse_HMG_3	6	1	+	7.646020840433303	7.221058243654619	TCAATGCCATTTA
chr7	7853185	7853186	chr7:7853186:A:G	rs6971178	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	8071149	8071150	chr7:8071150:A:G	rs10486207	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr7	8190516	8190517	chr7:8190517:T:C	chr7:8190517:T:C	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	8287430	8287431	chr7:8287431:A:G	rs7801871	A	G	G	Sox1.mouse_HMG_3	3	1	+	4.4141366374743285	-2.3868905244426775	TCAATTACTGTGA
chr7	8296157	8296158	chr7:8296158:A:G	rs80025856	A	G	A	Sox1.mouse_HMG_3	12	1	+	5.781282069124559	2.4933135928013574	TCAATTTCATCAA
chr7	8509846	8509847	chr7:8509847:C:T	rs2057865	C	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	8590849	8590850	chr7:8590850:C:G	rs10257762	C	G	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr7	8885746	8885747	chr7:8885747:A:G	rs990589	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	8976421	8976422	chr7:8976422:C:T	rs4725152	C	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	9090419	9090420	chr7:9090420:G:A	rs76370200	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	9138390	9138391	chr7:9138391:C:T	rs1946900	C	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr7	9210361	9210362	chr7:9210362:T:G	rs1285383	T	G	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	9278310	9278311	chr7:9278311:A:G	rs6968657	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr7	9278355	9278356	chr7:9278356:T:C	rs13230576	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	9283258	9283259	chr7:9283259:G:T	rs10952153	G	T	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	10129021	10129022	chr7:10129022:A:C	rs17162680	A	C	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	10142737	10142738	chr7:10142738:T:C	rs2215607	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	10300365	10300366	chr7:10300366:C:T	rs76219292	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr7	10308595	10308596	chr7:10308596:T:G	rs13244651	T	G	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	10331138	10331139	chr7:10331139:A:G	rs115527305	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	10343126	10343127	chr7:10343127:T:C	rs13236213	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.397739051903997	1.5108295441034894	GCAATATCATTGA
chr7	10819420	10819421	chr7:10819421:T:C	rs142124911	T	C	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	10940870	10940871	chr7:10940871:A:G	rs1681288	A	G	A	Sox1.mouse_HMG_3	9	1	-	3.872978861940038	-3.0139306458604698	ACACGACCATTGA
chr7	11182793	11182794	chr7:11182794:A:G	rs7458410	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	11185325	11185326	chr7:11185326:C:T	rs116094760	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr7	11192748	11192749	chr7:11192749:T:A	rs17164008	T	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	11211222	11211223	chr7:11211223:G:A	rs6460794	G	A	A	Sox1.mouse_HMG_3	10	1	-	4.533951579833962	9.169164375638577	ACAATACCAGCGA
chr7	11244365	11244366	chr7:11244366:C:T	rs73291734	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	11469810	11469811	chr7:11469811:A:G	rs56163655	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	11538672	11538673	chr7:11538673:T:C	rs17164736	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.4141366374743285	-2.4859593841403185	TCTATTACAGTGA
chr7	11557759	11557760	chr7:11557760:T:C	rs10229585	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	11564276	11564277	chr7:11564277:A:G	rs2189640	A	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	11702577	11702578	chr7:11702578:G:A	rs10257747	G	A	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	11769291	11769292	chr7:11769292:T:C	rs9654921	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	11848350	11848351	chr7:11848351:A:G	rs113018705	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr7	11934751	11934752	chr7:11934752:G:A	rs4400275	G	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	11986351	11986352	chr7:11986352:T:C	rs75303544	T	C	T	Sox1.mouse_HMG_3	7	1	+	4.5068495983157035	8.139317089410897	TCAATTCTATAGA
chr7	12064773	12064774	chr7:12064774:T:C	rs75627357	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.384764638623434	-2.502144869177074	CCACTAACATTGT
chr7	12231825	12231826	chr7:12231826:A:G	rs3800842	A	G	G	Sox1.mouse_HMG_3	8	1	+	6.403520451648614	-0.5052343276666074	TCACTTACATTAT
chr7	12295030	12295031	chr7:12295031:T:A	rs4721078	T	A	T	Sox1.mouse_HMG_3	12	1	-	4.3625832945977905	1.9491422525266446	TCTATTCCAGTGA
chr7	12567220	12567221	chr7:12567221:C:G	rs1859989	C	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	12567225	12567226	chr7:12567226:A:G	rs1859990	A	G	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	12636023	12636024	chr7:12636024:G:A	rs75173905	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	12690655	12690656	chr7:12690656:G:T	rs79385141	G	T	G	Sox1.mouse_HMG_3	1	1	-	4.680815994967743	-2.2219367923916002	TCAGTATCAGTGA
chr7	12775694	12775695	chr7:12775695:C:T	rs10262101	C	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr7	13028300	13028301	chr7:13028301:T:A	rs148889282	T	A	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	13715723	13715724	chr7:13715724:G:A	rs1942145	G	A	G	Sox1.mouse_HMG_3	1	1	-	4.439572530123151	-0.5186997009904768	TCAATTGCACTGG
chr7	13803559	13803560	chr7:13803560:C:T	rs112001594	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr7	13803560	13803561	chr7:13803561:G:C	rs187469889	G	C	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	13990782	13990783	chr7:13990783:G:A	rs571298682	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	14447032	14447033	chr7:14447033:A:G	rs10950526	A	G	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr7	14447047	14447048	chr7:14447048:A:G	rs6943928	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	14690786	14690787	chr7:14690787:A:T	rs17668635	A	T	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr7	14691169	14691170	chr7:14691170:T:G	rs12699655	T	G	t	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	14738282	14738283	chr7:14738283:T:G	rs1525094	T	G	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	14960672	14960673	chr7:14960673:A:T	rs36909	A	T	A	Sox1.mouse_HMG_3	4	1	-	9.948729724647503	5.313516928842889	TCACTTTCATTGT
chr7	14960679	14960680	chr7:14960680:G:A	rs36910	G	A	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr7	15084582	15084583	chr7:15084583:A:G	rs17379758	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	15086904	15086905	chr7:15086905:T:G	rs142218207	T	G	T	Sox1.mouse_HMG_3	4	1	+	5.946532190514949	-0.9535638310996997	TCACTTACATTCT
chr7	15137744	15137745	chr7:15137745:C:T	rs9639222	C	T	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	15137758	15137759	chr7:15137759:G:T	rs9639223	G	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	15601384	15601385	chr7:15601385:G:A	rs966470	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	15601416	15601417	chr7:15601417:T:C	rs17168881	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr7	15694048	15694049	chr7:15694049:T:C	rs4721453	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	15810717	15810718	chr7:15810718:T:C	rs149283908	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.328281750116487	-1.523897391976798	TCAAAGCCATTCA
chr7	15857593	15857594	chr7:15857594:G:A	rs38175	G	A	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	15888549	15888550	chr7:15888550:G:T	rs9655121	G	T	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr7	15916055	15916056	chr7:15916056:T:C	rs6968544	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	15924612	15924613	chr7:15924613:A:C	rs12699758	A	C	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr7	16039569	16039570	chr7:16039570:A:T	rs4721467	A	T	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	16269461	16269462	chr7:16269462:A:G	chr7:16269462:A:G	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.548929167819859	-0.3598256114953615	GCAATAACATTGT
chr7	16277029	16277030	chr7:16277030:G:C	rs1295129	G	C	C	Sox1.mouse_HMG_3	6	1	+	9.979237718442246	10.40420031522093	TCAAATGCATTGA
chr7	16458167	16458168	chr7:16458168:T:C	rs2141804	T	C	-	Sox1.mouse_HMG_3	9	1	+	4.853367197201214	-2.033542310599294	AAAATGACATTGA
chr7	16554937	16554938	chr7:16554938:G:C	rs116540265	G	C	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	16607106	16607107	chr7:16607107:G:A	rs7788389	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	16668187	16668188	chr7:16668188:G:T	rs77966925	G	T	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	16679038	16679039	chr7:16679039:G:A	chr7:16679039:G:A	G	A	G	Sox1.mouse_HMG_3	5	1	+	9.027324297377126	10.259997068444214	ACACTGTCATTGA
chr7	16741306	16741307	chr7:16741307:A:G	rs864211	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	16850301	16850302	chr7:16850302:T:C	rs1525738	T	C	T	Sox1.mouse_HMG_3	10	1	+	3.8205221672917706	-0.8146906285128435	TCAATGTCCTTGG
chr7	16882741	16882742	chr7:16882742:A:G	rs10950638	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	16939335	16939336	chr7:16939336:T:G	rs1405499956	T	G	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	17023188	17023189	chr7:17023189:T:C	rs60550274	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr7	17043097	17043098	chr7:17043098:A:G	rs662774	A	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr7	17063411	17063412	chr7:17063412:G:C	rs17346347	G	C	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr7	17239717	17239718	chr7:17239718:T:G	rs73680637	T	G	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr7	17368125	17368126	chr7:17368126:T:G	rs74542680	T	G	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	17402867	17402868	chr7:17402868:A:C	chr7:17402868:A:C	A	C	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	17701163	17701164	chr7:17701164:A:C	rs34476504	A	C	A	Sox1.mouse_HMG_3	4	1	-	5.38190103252794	-1.5181949890867075	TCACTTTCATTCT
chr7	17854450	17854451	chr7:17854451:A:G	rs2691624	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	17994807	17994808	chr7:17994808:C:T	rs12699936	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr7	17994810	17994811	chr7:17994811:A:G	rs12699937	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	18337639	18337640	chr7:18337640:C:T	rs17347060	C	T	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr7	18654810	18654811	chr7:18654811:C:T	rs4721715	C	T	T	Sox1.mouse_HMG_3	1	1	+	4.47918457388386	-0.4790876572297671	TCACACACATTGA
chr7	18654811	18654812	chr7:18654812:A:C	rs4721716	A	C	C	Sox1.mouse_HMG_3	2	1	+	4.47918457388386	-2.4295702054313604	TCACACACATTGA
chr7	18698695	18698696	chr7:18698696:C:T	rs1182736	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr7	18793170	18793171	chr7:18793171:C:T	rs141076905	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr7	18866884	18866885	chr7:18866885:A:C	rs146650699	A	C	A	Sox1.mouse_HMG_3	2	1	+	7.749952481999811	0.8411977026845912	TCAATGTCAGTGC
chr7	19020388	19020389	chr7:19020389:T:G	rs2906044	T	G	g	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	19030363	19030364	chr7:19030364:C:A	rs77304083	C	A	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	19102831	19102832	chr7:19102832:A:G	rs61673177	A	G	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr7	19554540	19554541	chr7:19554541:G:A	rs2192477	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	19576368	19576369	chr7:19576369:A:G	rs10257637	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.37830939426267	-2.5304453850525497	TCATAAACATTGA
chr7	19576386	19576387	chr7:19576387:C:T	rs4612239	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	19621662	19621663	chr7:19621663:A:C	rs13235383	A	C	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr7	20241501	20241502	chr7:20241502:C:A	rs117757442	C	A	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	20280154	20280155	chr7:20280155:G:A	rs62453044	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr7	20280191	20280192	chr7:20280192:T:A	rs62453045	T	A	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr7	20291368	20291369	chr7:20291369:G:C	rs76401609	G	C	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr7	20342050	20342051	chr7:20342051:G:A	rs3807931	G	A	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	20404097	20404098	chr7:20404098:A:G	rs6972297	A	G	A	Sox1.mouse_HMG_3	4	1	-	7.221865225770653	0.3217692041560061	ACAATTGCATTCA
chr7	20466767	20466768	chr7:20466768:A:G	rs12700203	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.124364604737881	-1.7625449030626272	TAAATTTCATTGC
chr7	20649441	20649442	chr7:20649442:A:C	rs6955287	A	C	C	Sox1.mouse_HMG_3	3	1	+	8.779343995067048	6.615179465870623	TCAATCACATTGC
chr7	21096550	21096551	chr7:21096551:G:T	rs17678809	G	T	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	21108058	21108059	chr7:21108059:A:C	rs11974269	A	C	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr7	21307852	21307853	chr7:21307853:T:C	rs1613562	T	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	21359155	21359156	chr7:21359156:A:G	rs7793253	A	G	A	Sox1.mouse_HMG_3	10	1	-	5.508957272405556	0.873744476600943	TCCCTGACATTGA
chr7	21426538	21426539	chr7:21426539:T:C	rs2073535	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.481669400164904	0.6806422382478978	TCAAAGCCATTGT
chr7	21426556	21426557	chr7:21426557:C:G	rs117219096	C	G	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr7	21672241	21672242	chr7:21672242:C:T	rs10950869	C	T	T	Sox1.mouse_HMG_3	7	1	+	5.825346269737651	2.192878778642459	GCAATTACATTGT
chr7	21765583	21765584	chr7:21765584:A:G	rs72657373	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.842689855387121	-2.0574061662275263	TCAATTCCCTTGG
chr7	21765596	21765597	chr7:21765597:G:A	rs72657374	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr7	22041010	22041011	chr7:22041011:G:T	rs1476692	G	T	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	22115757	22115758	chr7:22115758:G:T	rs17146234	G	T	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr7	22124945	22124946	chr7:22124946:T:C	rs56337702	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr7	22126403	22126404	chr7:22126404:C:T	rs1419755	C	T	T	Sox1.mouse_HMG_3	3	1	+	9.353862989915918	4.717000357195339	TCACTGTCATTGC
chr7	22147336	22147337	chr7:22147337:T:C	rs6461639	T	C	C	Sox1.mouse_HMG_3	2	1	-	5.838889293661605	-1.0698654856536152	TCACTTTCATTAT
chr7	22294233	22294234	chr7:22294234:T:A	rs2528921	T	A	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	22572932	22572933	chr7:22572933:T:G	rs118045865	T	G	T	Sox1.mouse_HMG_3	9	1	+	4.795954141683171	1.0278791045706384	TCCATAACATTAA
chr7	22662724	22662725	chr7:22662725:C:G	rs2961296	C	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr7	22801890	22801891	chr7:22801891:G:T	rs1966137	G	T	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr7	22853552	22853553	chr7:22853553:A:T	rs28431944	A	T	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	22948968	22948969	chr7:22948969:G:C	rs4719721	G	C	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	23022606	23022607	chr7:23022607:C:T	rs148850755	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	23022650	23022651	chr7:23022651:C:T	rs1441229413	C	T	c	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr7	23022651	23022652	chr7:23022652:G:A	rs77520274	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr7	23078430	23078431	chr7:23078431:T:A	rs6957013	T	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	24036189	24036190	chr7:24036190:C:T	rs2042500	C	T	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	24155647	24155648	chr7:24155648:C:T	rs198301	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr7	24318580	24318581	chr7:24318581:G:A	rs6461791	G	A	G	Sox1.mouse_HMG_3	11	1	+	6.88281472330773	2.7729742923218326	TCAAAGTCATTGC
chr7	24966042	24966043	chr7:24966043:C:G	rs113952582	C	G	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	24971831	24971832	chr7:24971832:T:C	rs537108862	T	C	T	Sox1.mouse_HMG_3	6	1	-	5.143721527512412	4.66720558785719	TGAATAACAGTGA
chr7	25259984	25259985	chr7:25259985:G:C	rs62451646	G	C	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr7	25276201	25276202	chr7:25276202:C:T	rs6951835	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	25325780	25325781	chr7:25325781:A:G	rs10281820	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr7	25522251	25522252	chr7:25522252:C:T	rs6977303	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr7	25528234	25528235	chr7:25528235:T:C	rs10807828	T	C	C	Sox1.mouse_HMG_3	10	1	+	5.742785384723877	1.1075725889192634	ACAATTGTATTGT
chr7	25653570	25653571	chr7:25653571:A:T	rs9691816	A	T	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	25896126	25896127	chr7:25896127:C:A	rs73081656	C	A	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	26197988	26197989	chr7:26197989:A:C	rs11971308	A	C	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr7	26348644	26348645	chr7:26348645:G:T	rs10235391	G	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	26349003	26349004	chr7:26349004:A:G	rs10267867	A	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	26365732	26365733	chr7:26365733:A:G	rs2698716	A	G	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	26399589	26399590	chr7:26399590:G:A	rs13225244	G	A	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr7	26526453	26526454	chr7:26526454:G:A	rs6942911	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	26554338	26554339	chr7:26554339:T:C	rs71521777	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	26723325	26723326	chr7:26723326:T:C	rs1024454	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.001970815661874	-1.8849386921386337	TCAGTTACATTGG
chr7	26868976	26868977	chr7:26868977:T:C	rs10235680	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr7	27066057	27066058	chr7:27066058:T:C	rs113450678	T	C	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	27082458	27082459	chr7:27082459:A:T	rs12673984	A	T	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	27157981	27157982	chr7:27157982:C:G	rs4722666	C	G	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	27186197	27186198	chr7:27186198:A:C	rs141152665	A	C	A	Sox1.mouse_HMG_3	12	1	-	5.300913450561065	4.42638601630901	TCAATTGCATGGT
chr7	27189757	27189758	chr7:27189758:C:T	rs17501167	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	27868025	27868026	chr7:27868026:T:C	rs116990708	T	C	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	28203566	28203567	chr7:28203567:T:C	rs10263934	T	C	T	Sox1.mouse_HMG_3	9	1	+	11.700578699558429	4.813669191757924	ACAATTTCATTGA
chr7	28381416	28381417	chr7:28381417:G:T	rs1811248	G	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	28493627	28493628	chr7:28493628:G:A	rs28393709	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr7	28503614	28503615	chr7:28503615:T:C	rs78755701	T	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	28553690	28553691	chr7:28553691:T:C	rs11764072	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	28630345	28630346	chr7:28630346:C:G	rs984101	C	G	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	28630346	28630347	chr7:28630347:T:A	rs984103	T	A	T	Sox1.mouse_HMG_3	0	1	+	3.489121170210763	0.6633645738541205	TCACTTCCAATGC
chr7	28685918	28685919	chr7:28685919:G:A	rs757980	G	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	28741168	28741169	chr7:28741169:G:A	rs73077847	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	28866225	28866226	chr7:28866226:T:C	rs11763355	T	C	C	Sox1.mouse_HMG_3	5	1	-	8.31432116665474	7.081648395587651	ACAATATCATTAA
chr7	28866236	28866237	chr7:28866237:G:A	rs73294992	G	A	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	28950056	28950057	chr7:28950057:C:T	rs75395053	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	29339068	29339069	chr7:29339069:C:A	rs61653900	C	A	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	29454680	29454681	chr7:29454681:A:G	rs892652632	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	29469348	29469349	chr7:29469349:A:G	rs79776490	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	30168857	30168858	chr7:30168858:G:A	rs77270172	G	A	G	Sox1.mouse_HMG_3	7	1	-	3.901793454607447	0.2693259635122549	TCATTAGCATCGA
chr7	30176689	30176690	chr7:30176690:C:T	rs79436073	C	T	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr7	30942143	30942144	chr7:30942144:T:A	rs75713558	T	A	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	31183048	31183049	chr7:31183049:A:G	rs11543666	A	G	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	31337754	31337755	chr7:31337755:T:G	rs10238918	T	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	31811854	31811855	chr7:31811855:G:A	rs77458769	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.310115195408503	1.2002747644226055	TCACTGCCAGTGG
chr7	31885418	31885419	chr7:31885419:T:C	rs116213572	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.260715111750644	-1.6261943960498646	GCAATTTCATTGT
chr7	32089071	32089072	chr7:32089072:C:T	chr7:32089072:C:T	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	32283487	32283488	chr7:32283488:T:C	rs17161132	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	32472188	32472189	chr7:32472189:T:G	rs17362028	T	G	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	32611361	32611362	chr7:32611362:G:T	rs184193689	G	T	g	Sox1.mouse_HMG_3	12	1	-	5.790721388167228	8.289939291985077	TCAGTTACATTGC
chr7	32943870	32943871	chr7:32943871:A:G	rs886423346	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.867142237094981	-1.933884924822023	TCAATTCCATTTG
chr7	33675691	33675692	chr7:33675692:A:G	rs75903717	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	33880122	33880123	chr7:33880123:T:C	rs315857	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	33914325	33914326	chr7:33914326:C:T	rs17170489	C	T	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	33982688	33982689	chr7:33982689:C:T	rs10486625	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	33982721	33982722	chr7:33982722:T:C	rs1029075968	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	34088222	34088223	chr7:34088223:G:A	rs566879631	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	34109980	34109981	chr7:34109981:C:T	rs10224203	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	34665388	34665389	chr7:34665389:A:G	rs2530567	A	G	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	35255879	35255880	chr7:35255880:T:C	rs1003549	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	35256168	35256169	chr7:35256169:A:C	rs28561590	A	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	35482252	35482253	chr7:35482253:G:A	rs10242913	G	A	G	Sox1.mouse_HMG_3	7	1	-	6.028484633435889	2.396017142340697	ACAATACCTTTGA
chr7	35558056	35558057	chr7:35558057:A:G	rs72616356	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.1223505549075945	-1.7645589528929129	TCCATGCCATTGC
chr7	35561072	35561073	chr7:35561073:A:T	rs58933480	A	T	A	Sox1.mouse_HMG_3	10	1	-	5.259680759530836	-1.6404152620838122	TCTATGACATTGT
chr7	35865321	35865322	chr7:35865322:C:A	rs2715605	C	A	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr7	36040098	36040099	chr7:36040099:A:G	rs2718021	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	36058071	36058072	chr7:36058072:C:T	rs28520934	C	T	C	Sox1.mouse_HMG_3	3	1	+	5.740817882206658	1.1039552494860758	TCACATCCATTGC
chr7	36109041	36109042	chr7:36109042:C:A	rs10246132	C	A	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr7	36285449	36285450	chr7:36285450:A:G	rs124364	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	36311671	36311672	chr7:36311672:C:T	rs111924802	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	36464460	36464461	chr7:36464461:T:C	rs17170599	T	C	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	36735852	36735853	chr7:36735853:A:G	rs11764769	A	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	36811548	36811549	chr7:36811549:G:T	rs7787226	G	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr7	36828334	36828335	chr7:36828335:G:A	rs6949938	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	36884485	36884486	chr7:36884486:C:A	rs3778712	C	A	a	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	37129625	37129626	chr7:37129626:A:G	rs2551069	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	37129668	37129669	chr7:37129669:A:C	rs2551070	A	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	37510368	37510369	chr7:37510369:G:T	rs12536939	G	T	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr7	37585505	37585506	chr7:37585506:T:C	rs10951529	T	C	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	37671921	37671922	chr7:37671922:T:C	rs2718079	T	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	37753299	37753300	chr7:37753300:T:C	rs10274478	T	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	38020835	38020836	chr7:38020836:A:G	rs7784794	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.202922286634742	-1.6839872211657656	TCAATGAGATTGC
chr7	38213262	38213263	chr7:38213263:G:A	rs12531618	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr7	38226748	38226749	chr7:38226749:C:G	rs10265214	C	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr7	38321949	38321950	chr7:38321950:A:C	rs73692530	A	C	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	38376614	38376615	chr7:38376615:T:C	rs55682581	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.9495676441256276	-0.8514595177913782	TCAATATCACTGT
chr7	38574755	38574756	chr7:38574756:A:G	rs2392584	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	38710235	38710236	chr7:38710236:A:T	rs1978172	A	T	a	Sox1.mouse_HMG_3	3	1	+	9.136193121317435	2.3351659594004306	ACAATATCATTGG
chr7	38744864	38744865	chr7:38744865:C:A	rs2240354	C	A	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	38744880	38744881	chr7:38744881:C:T	rs2240353	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	38745192	38745193	chr7:38745193:G:T	rs17679853	G	T	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr7	38776337	38776338	chr7:38776338:T:C	rs78493385	T	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	38776344	38776345	chr7:38776345:G:C	rs11765467	G	C	C	Sox1.mouse_HMG_3	4	1	+	5.127021370482577	5.127021370482577	TCAAGTTCATTGC
chr7	38776840	38776841	chr7:38776841:A:G	rs1468347	A	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	39017431	39017432	chr7:39017432:A:G	rs859513	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr7	39535167	39535168	chr7:39535168:A:G	rs12113030	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	39559707	39559708	chr7:39559708:C:T	rs7777969	C	T	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	39810331	39810332	chr7:39810332:C:T	rs4720341	C	T	.	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	40004682	40004683	chr7:40004683:A:G	rs773393	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.639671367860581	-1.161355794056426	TCAATAACACTGG
chr7	40361776	40361777	chr7:40361777:G:A	rs6462979	G	A	A	Sox1.mouse_HMG_3	12	1	-	5.085529492663241	5.171306354409943	TCACTTCAATTGC
chr7	41053934	41053935	chr7:41053935:G:A	rs570805935	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	41053969	41053970	chr7:41053970:T:G	rs73319570	T	G	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	41097374	41097375	chr7:41097375:C:T	rs116235239	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr7	41114783	41114784	chr7:41114784:G:A	rs10279346	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	41828317	41828318	chr7:41828318:C:T	rs719048	C	T	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	41853573	41853574	chr7:41853574:A:G	rs1978194	A	G	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr7	41975564	41975565	chr7:41975565:G:A	rs7794414	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr7	42021923	42021924	chr7:42021924:C:T	rs2299142	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr7	42063784	42063785	chr7:42063785:T:G	rs1527496	T	G	G	Sox1.mouse_HMG_3	5	1	-	6.465252569429248	1.9292651163298546	TCAATACCATTTT
chr7	42162644	42162645	chr7:42162645:C:G	rs117013558	C	G	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	42254264	42254265	chr7:42254265:G:A	rs62443839	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	42574647	42574648	chr7:42574648:T:G	rs192673816	T	G	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	43431194	43431195	chr7:43431195:T:C	rs777395463	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	44538291	44538292	chr7:44538292:A:G	rs147201814	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	44638078	44638079	chr7:44638079:C:T	rs116046892	C	T	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	44638081	44638082	chr7:44638082:C:A	rs112127822	C	A	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr7	44656125	44656126	chr7:44656126:T:C	rs2268314	T	C	C	Sox1.mouse_HMG_3	8	1	-	6.784027373833981	-0.12472740548123795	TCAATTTTATTAA
chr7	44684226	44684227	chr7:44684227:A:G	rs7797184	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.390175619624177	-2.4967338881763306	CCAATGCCATTGG
chr7	45024440	45024441	chr7:45024441:G:C	rs884082	G	C	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr7	45062718	45062719	chr7:45062719:A:C	rs7798100	A	C	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr7	45123499	45123500	chr7:45123500:C:T	rs6943664	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr7	45187692	45187693	chr7:45187693:C:G	rs17172492	C	G	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	45187722	45187723	chr7:45187723:C:T	rs13229410	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	45187724	45187725	chr7:45187725:A:G	rs35758250	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr7	45189716	45189717	chr7:45189717:G:A	rs10951805	G	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	45312113	45312114	chr7:45312114:A:T	rs73105947	A	T	a	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	45565942	45565943	chr7:45565943:C:T	rs73318920	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	45633223	45633224	chr7:45633224:G:A	rs12112588	G	A	A	Sox1.mouse_HMG_3	4	1	-	5.149968914391216	12.050064936005862	TCAACAGCATTGG
chr7	45655837	45655838	chr7:45655838:T:C	rs2471226	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.557335285500841	-2.3427607361138065	ACACTAACAGTGC
chr7	45917455	45917456	chr7:45917456:G:C	rs2471551	G	C	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr7	45980022	45980023	chr7:45980023:C:T	rs1723959	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	46034050	46034051	chr7:46034051:C:G	rs1540824	C	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr7	46119143	46119144	chr7:46119144:G:T	rs12532079	G	T	g	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr7	46126904	46126905	chr7:46126905:C:G	rs13231830	C	G	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	46206676	46206677	chr7:46206677:G:A	rs114615235	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	46206682	46206683	chr7:46206683:C:A	rs537948336	C	A	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	46216047	46216048	chr7:46216048:A:G	rs78123299	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	46247713	46247714	chr7:46247714:C:T	rs28696071	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr7	46352766	46352767	chr7:46352767:G:A	rs79316157	G	A	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	46361316	46361317	chr7:46361317:G:A	rs34967166	G	A	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	46383601	46383602	chr7:46383602:G:T	rs1462279	G	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	46390756	46390757	chr7:46390757:G:C	rs71543905	G	C	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	46589433	46589434	chr7:46589434:A:G	rs10258175	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.933724364566791	-0.9663716570478564	TAAATATCATTGT
chr7	46654460	46654461	chr7:46654461:C:T	rs34731851	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	47000893	47000894	chr7:47000894:G:A	rs28375712	G	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	47139763	47139764	chr7:47139764:A:T	rs1583674	A	T	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr7	47228244	47228245	chr7:47228245:C:T	rs146136416	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	47236268	47236269	chr7:47236269:C:T	rs2728461	C	T	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	47294048	47294049	chr7:47294049:C:T	rs57198477	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	47294059	47294060	chr7:47294060:G:A	rs149268955	G	A	G	Sox1.mouse_HMG_3	12	1	-	6.528106393559277	6.61388325530598	ACACTGTCATTGC
chr7	47433566	47433567	chr7:47433567:T:G	rs187084517	T	G	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	47441612	47441613	chr7:47441613:A:G	rs13231464	A	G	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	47458765	47458766	chr7:47458766:G:A	rs2941549	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr7	47663692	47663693	chr7:47663693:C:T	rs34843472	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	47699711	47699712	chr7:47699712:C:T	rs534604609	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	47786625	47786626	chr7:47786626:C:T	rs73329455	C	T	c	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	47795184	47795185	chr7:47795185:C:T	rs62448551	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	47969068	47969069	chr7:47969069:A:G	rs3176582	A	G	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	48085233	48085234	chr7:48085234:T:C	rs11971012	T	C	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr7	48110723	48110724	chr7:48110724:T:C	rs112645772	T	C	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr7	48115909	48115910	chr7:48115910:G:A	rs7784208	G	A	A	Sox1.mouse_HMG_3	7	1	-	4.753059556507206	1.1205920654120138	TCAACACCATTAA
chr7	48419654	48419655	chr7:48419655:C:A	rs35457699	C	A	c	Sox1.mouse_HMG_3	1	1	+	4.894243198263659	-2.008509589095686	TCAATTACTTTGG
chr7	48431836	48431837	chr7:48431837:C:T	rs7357104	C	T	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	48680999	48681000	chr7:48681000:A:G	rs35316325	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.639071494691615	-1.2696832846236048	TCAATTCAATTAA
chr7	49371616	49371617	chr7:49371617:C:A	rs2195662	C	A	A	Sox1.mouse_HMG_3	9	1	-	7.936633883885857	11.704708920998392	TCAATAACAGTAA
chr7	49581277	49581278	chr7:49581278:T:C	rs10257732	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	50136057	50136058	chr7:50136058:G:A	rs12718244	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	50136084	50136085	chr7:50136085:C:T	rs12672941	C	T	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	50214243	50214244	chr7:50214244:C:T	chr7:50214244:C:T	C	T	C	Sox1.mouse_HMG_3	1	1	+	6.636125278108398	1.6778530469947717	TCAAATCCAGTGA
chr7	50263052	50263053	chr7:50263053:G:A	rs762293009	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	50366325	50366326	chr7:50366326:G:A	rs62447200	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	50714742	50714743	chr7:50714743:A:G	rs28470699	A	G	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	50767084	50767085	chr7:50767085:G:T	rs2074722	G	T	T	Sox1.mouse_HMG_3	1	1	-	5.682993770769013	-1.2197590165903305	TCGATTACATTGC
chr7	50836210	50836211	chr7:50836211:T:A	rs75235453	T	A	T	Sox1.mouse_HMG_3	8	1	-	4.872811159543058	-2.0359436197721617	TCACTGTCATTCT
chr7	50836236	50836237	chr7:50836237:A:G	rs4947477	A	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	50843980	50843981	chr7:50843981:T:C	rs10230084	T	C	c	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	50859077	50859078	chr7:50859078:G:A	rs7789720	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	50864882	50864883	chr7:50864883:T:C	rs2161825	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.951906000710711	-0.9568487786045103	TCAATAGCACTGC
chr7	51279068	51279069	chr7:51279069:G:A	rs78663744	G	A	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	51290205	51290206	chr7:51290206:T:C	rs148533647	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	51577519	51577520	chr7:51577520:A:T	rs2079823	A	T	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	52005997	52005998	chr7:52005998:C:G	rs34510568	C	G	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr7	52506447	52506448	chr7:52506448:G:A	rs6979554	G	A	.	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	52506465	52506466	chr7:52506466:C:G	rs6942636	C	G	C	Sox1.mouse_HMG_3	4	1	+	4.4227953951749015	4.4227953951749015	TCAACTACAGTGA
chr7	52536511	52536512	chr7:52536512:C:T	rs10240307	C	T	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr7	52541448	52541449	chr7:52541449:A:G	rs59668700	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	52541457	52541458	chr7:52541458:C:G	rs113262481	C	G	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr7	52748020	52748021	chr7:52748021:A:G	rs73106268	A	G	G	Sox1.mouse_HMG_3	8	1	+	5.612180794357778	-1.2965739849574427	ACAATAGCATGGA
chr7	52786271	52786272	chr7:52786272:C:G	rs117102747	C	G	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	52833948	52833949	chr7:52833949:G:A	rs2965623	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr7	52834703	52834704	chr7:52834704:A:G	rs2965626	A	G	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	53001047	53001048	chr7:53001048:T:C	rs62454486	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr7	53853347	53853348	chr7:53853348:G:A	rs75492939	G	A	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	54351327	54351328	chr7:54351328:A:G	rs10249215	A	G	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr7	54351417	54351418	chr7:54351418:G:A	rs1917576	G	A	A	Sox1.mouse_HMG_3	1	1	-	4.950417472785336	-0.007854758328289524	TCATTTCCATTGG
chr7	54351436	54351437	chr7:54351437:C:G	rs55925666	C	G	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	54468640	54468641	chr7:54468641:C:A	rs4591978	C	A	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	54481665	54481666	chr7:54481666:G:A	rs588610	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	54505884	54505885	chr7:54505885:G:A	rs587629	G	A	g	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr7	54550316	54550317	chr7:54550317:C:T	rs2293343	C	T	c	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	54810461	54810462	chr7:54810462:A:G	rs1919827	A	G	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr7	55043134	55043135	chr7:55043135:C:T	rs17172427	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr7	55092289	55092290	chr7:55092290:A:G	rs6972246	A	G	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	55139167	55139168	chr7:55139168:G:T	rs887824	G	T	G	Sox1.mouse_HMG_3	1	1	-	6.080037976312427	-0.8227148110469185	ACAATAACGTTGA
chr7	55167651	55167652	chr7:55167652:C:T	rs73137522	C	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr7	55206390	55206391	chr7:55206391:T:C	rs884225	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	55280341	55280342	chr7:55280342:T:C	rs113656624	T	C	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	55536705	55536706	chr7:55536706:A:C	rs17565995	A	C	A	Sox1.mouse_HMG_3	12	1	+	4.869210476760051	2.3699925729422024	ACAATGACACTGA
chr7	55674012	55674013	chr7:55674013:G:C	rs11238372	G	C	.	Sox1.mouse_HMG_3	7	1	-	4.52351409178851	-2.3562222986761	TCACATACAGTGA
chr7	55674025	55674026	chr7:55674026:A:G	rs11238373	A	G	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	55823032	55823033	chr7:55823033:G:A	rs73354524	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr7	55898363	55898364	chr7:55898364:C:A	rs10269190	C	A	A	Sox1.mouse_HMG_3	3	1	-	4.768931213299528	4.768931213299528	TCAGTAGCAGTGA
chr7	55912958	55912959	chr7:55912959:C:T	rs111375108	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	56125949	56125950	chr7:56125950:C:T	rs10499761	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	56286679	56286680	chr7:56286680:C:T	rs117126626	C	T	.	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	56806631	56806632	chr7:56806632:G:A	rs148648344	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	57329003	57329004	chr7:57329004:C:T	rs73699759	C	T	c	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	58039204	58039205	chr7:58039205:T:C	rs7293857	T	C	.	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	58064305	58064306	chr7:58064306:G:C	rs992639176	G	C	.	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr7	62305758	62305759	chr7:62305759:A:G	rs1364491657	A	G	.	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr7	62309165	62309166	chr7:62309166:T:G	rs1353083403	T	G	.	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	62350272	62350273	chr7:62350273:T:C	rs79542864	T	C	.	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	62350509	62350510	chr7:62350510:C:A	rs79836635	C	A	.	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	62410863	62410864	chr7:62410864:A:G	rs1198263383	A	G	N	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	64463850	64463851	chr7:64463851:G:A	chr7:64463851:G:A	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	64471173	64471174	chr7:64471174:C:A	rs80216832	C	A	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	64614992	64614993	chr7:64614993:C:A	rs57553713	C	A	c	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	65080779	65080780	chr7:65080780:T:G	rs181664065	T	G	.	Sox1.mouse_HMG_3	2	1	-	4.376013839249884	-2.5327409400653353	GCAATAGCATTAA
chr7	66152983	66152984	chr7:66152984:G:A	rs316305	G	A	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr7	66960638	66960639	chr7:66960639:C:T	rs17748198	C	T	C	Sox1.mouse_HMG_3	1	1	+	6.431029050559083	1.4727568194454563	TCAATAACATTTC
chr7	67067306	67067307	chr7:67067307:G:C	chr7:67067307:G:C	G	C	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr7	67137541	67137542	chr7:67137542:A:G	rs79302106	A	G	A	Sox1.mouse_HMG_3	0	1	+	8.9256880383457	4.899265492609057	ACAATTCCATTGG
chr7	67236504	67236505	chr7:67236505:C:T	rs4718492	C	T	.	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	67236527	67236528	chr7:67236528:C:T	rs4718493	C	T	.	Sox1.mouse_HMG_3	5	1	-	4.787034297796355	6.019707068863443	TCACTGTCATTCC
chr7	67333055	67333056	chr7:67333056:T:C	rs4717369	T	C	.	Sox1.mouse_HMG_3	0	1	+	5.306127253282913	-1.5460518888103703	TCACTTTCAGTGG
chr7	67448097	67448098	chr7:67448098:T:C	rs78299258	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr7	67793802	67793803	chr7:67793803:T:A	rs7781614	T	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	68033348	68033349	chr7:68033349:T:C	rs6942436	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr7	68265552	68265553	chr7:68265553:T:C	rs3113130	T	C	C	Sox1.mouse_HMG_3	4	1	+	3.8224718372215087	-3.077624184393139	CCACTAGCATTGC
chr7	68321034	68321035	chr7:68321035:G:A	rs148257377	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	68365013	68365014	chr7:68365014:G:A	rs13234428	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr7	68365022	68365023	chr7:68365023:A:G	rs13222045	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr7	68492240	68492241	chr7:68492241:A:G	rs111066349	A	G	a	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	68622954	68622955	chr7:68622955:T:C	rs7777652	T	C	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	68622979	68622980	chr7:68622980:G:A	rs4262230	G	A	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	69061853	69061854	chr7:69061854:T:C	rs12671836	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.673121801601981	0.7730257799873332	TCAATGACCTTGA
chr7	69127265	69127266	chr7:69127266:T:C	rs7790352	T	C	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr7	69261747	69261748	chr7:69261748:G:A	rs62454810	G	A	G	Sox1.mouse_HMG_3	1	1	-	4.016365003021772	-0.941907228091855	TCAGTGGCATTGG
chr7	69541889	69541890	chr7:69541890:G:A	rs41859	G	A	A	Sox1.mouse_HMG_3	6	1	+	4.208214325760499	4.6847302654157215	ACAATCGCAGTGA
chr7	70132085	70132086	chr7:70132086:G:A	rs7783592	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr7	70387780	70387781	chr7:70387781:T:C	rs75501049	T	C	T	Sox1.mouse_HMG_3	4	1	+	11.518027519112342	4.617931497497697	TCAATGTCATTGC
chr7	70567067	70567068	chr7:70567068:C:G	rs4717534	C	G	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr7	70744956	70744957	chr7:70744957:C:T	rs6942750	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	70913400	70913401	chr7:70913401:C:T	rs7800104	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	70913420	70913421	chr7:70913421:T:C	rs7786437	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	71402758	71402759	chr7:71402759:A:C	rs34419262	A	C	A	Sox1.mouse_HMG_3	8	1	+	6.701998473637765	-0.20675630567745507	ACACTGGCATTGT
chr7	71752030	71752031	chr7:71752031:T:C	rs10235229	T	C	T	Sox1.mouse_HMG_3	12	1	-	6.086039968268302	2.7980714919450995	AAAATAACATTGA
chr7	71752033	71752034	chr7:71752034:A:G	rs10232040	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.086039968268302	-0.8008695395322059	AAAATAACATTGA
chr7	71768384	71768385	chr7:71768385:C:A	rs992124	C	A	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	72542865	72542866	chr7:72542866:G:A	rs10229194	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	73429207	73429208	chr7:73429208:A:C	rs73134905	A	C	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	73626936	73626937	chr7:73626937:A:G	rs34958022	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr7	73774948	73774949	chr7:73774949:A:G	rs10236342	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	74628494	74628495	chr7:74628495:A:C	rs111361634	A	C	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr7	75565235	75565236	chr7:75565236:C:T	rs191430881	C	T	c	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	75565245	75565246	chr7:75565246:G:A	rs183623160	G	A	g	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	75743660	75743661	chr7:75743661:T:C	rs1859293	T	C	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr7	76520529	76520530	chr7:76520530:C:T	rs140612923	C	T	.	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	76805117	76805118	chr7:76805118:T:C	rs12540518	T	C	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	76924845	76924846	chr7:76924846:A:G	rs10255719	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	77152933	77152934	chr7:77152934:A:C	rs144455686	A	C	A	Sox1.mouse_HMG_3	0	1	+	6.101883247827141	2.0754607020904974	ACAATAACACTGA
chr7	77253319	77253320	chr7:77253320:A:T	rs117334834	A	T	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	77253339	77253340	chr7:77253340:T:C	rs4729254	T	C	T	Sox1.mouse_HMG_3	0	1	-	4.722647321952804	0.6962247762161629	ACAATTGCATTCC
chr7	77450743	77450744	chr7:77450744:C:A	rs1017036	C	A	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr7	77812274	77812275	chr7:77812275:G:A	rs563637245	G	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	77826581	77826582	chr7:77826582:A:G	rs4729772	A	G	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	78073734	78073735	chr7:78073735:G:T	rs73362636	G	T	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	78088125	78088126	chr7:78088126:T:C	rs3807745	T	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	78172695	78172696	chr7:78172696:A:G	rs727911	A	G	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr7	78413751	78413752	chr7:78413752:A:G	rs138417935	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr7	78449107	78449108	chr7:78449108:C:A	rs117460038	C	A	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr7	78498440	78498441	chr7:78498441:T:A	rs4730332	T	A	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	78529291	78529292	chr7:78529292:C:A	rs10271370	C	A	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	78603135	78603136	chr7:78603136:T:A	rs22535	T	A	A	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	78722716	78722717	chr7:78722717:G:A	rs7805425	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	79347492	79347493	chr7:79347493:T:C	rs848932	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.780849419000196	0.893939911199688	TCATTGACATTGA
chr7	79610960	79610961	chr7:79610961:G:C	rs73377607	G	C	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	79660712	79660713	chr7:79660713:A:G	rs2689818	A	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr7	79773234	79773235	chr7:79773235:C:T	rs10499847	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	80106722	80106723	chr7:80106723:T:G	rs10248649	T	G	T	Sox1.mouse_HMG_3	2	1	-	3.489121170210763	-3.4196336091044564	TCACTTCCAATGC
chr7	80233553	80233554	chr7:80233554:C:G	rs4731301	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	80387440	80387441	chr7:80387441:G:A	rs304782	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr7	80480958	80480959	chr7:80480959:C:T	rs75068980	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	80549297	80549298	chr7:80549298:C:T	rs112905381	C	T	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr7	80763899	80763900	chr7:80763900:T:C	rs3823478	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.347165406637938	1.4602558988374292	TGAATATCATTGA
chr7	80874135	80874136	chr7:80874136:A:G	rs58283863	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	80924086	80924087	chr7:80924087:G:A	rs1457776052	G	A	G	Sox1.mouse_HMG_3	2	1	-	3.937620697819106	3.937620697819106	TCCATTGCAGTGA
chr7	80937472	80937473	chr7:80937473:G:A	rs17154598	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	80942147	80942148	chr7:80942148:C:T	rs4731944	C	T	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr7	80951428	80951429	chr7:80951429:A:G	rs13245141	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr7	80968207	80968208	chr7:80968208:T:A	rs76829266	T	A	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	80992266	80992267	chr7:80992267:G:A	rs853045	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr7	81298788	81298789	chr7:81298789:T:A	rs79299727	T	A	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	81407350	81407351	chr7:81407351:A:G	rs12531093	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr7	81887468	81887469	chr7:81887469:A:G	rs4732414	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.603154023787257	-0.30560075552796273	TCAAATTCATTGG
chr7	81971125	81971126	chr7:81971126:C:T	rs37068	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	82035534	82035535	chr7:82035535:A:G	rs10235670	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	82078961	82078962	chr7:82078962:T:A	rs1862123	T	A	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	82079001	82079002	chr7:82079002:G:T	rs1011696	G	T	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	82094177	82094178	chr7:82094178:A:T	rs2068378	A	T	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr7	82128410	82128411	chr7:82128411:G:A	rs258692	G	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	82167319	82167320	chr7:82167320:G:A	rs17155962	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	82468607	82468608	chr7:82468608:G:C	rs4728514	G	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	82468643	82468644	chr7:82468644:C:T	rs1398014971	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	82576861	82576862	chr7:82576862:C:T	rs7457005	C	T	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr7	82756415	82756416	chr7:82756416:G:T	rs1859174	G	T	.	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	83211896	83211897	chr7:83211897:A:G	rs11773318	A	G	A	Sox1.mouse_HMG_3	1	1	-	7.072833103109188	12.031105334222813	TTAATGCCATTGC
chr7	83268019	83268020	chr7:83268020:G:A	rs17289395	G	A	G	Sox1.mouse_HMG_3	12	1	-	6.462750943372898	6.548527805119599	TCATTACCATTGC
chr7	83341749	83341750	chr7:83341750:A:G	rs2371669	A	G	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	83418268	83418269	chr7:83418269:A:C	rs2713146	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	83472600	83472601	chr7:83472601:C:T	rs62476981	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	83495045	83495046	chr7:83495046:C:A	rs112810871	C	A	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr7	83526099	83526100	chr7:83526100:C:G	rs1001617308	C	G	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	84040284	84040285	chr7:84040285:A:G	rs4732536	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	84122799	84122800	chr7:84122800:T:A	rs17158642	T	A	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	84136417	84136418	chr7:84136418:T:C	rs34018474	T	C	T	Sox1.mouse_HMG_3	6	1	+	6.201451267193496	6.714529082303967	TCACTATCATTTA
chr7	84136425	84136426	chr7:84136426:A:G	rs35789545	A	G	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr7	84207840	84207841	chr7:84207841:C:A	rs13230138	C	A	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	84530115	84530116	chr7:84530116:A:T	rs17231124	A	T	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	84790938	84790939	chr7:84790939:A:G	rs891484	A	G	a	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	85285790	85285791	chr7:85285791:A:G	rs17159755	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.3712420522983635	-2.5375127270168565	TCAACTCCAGTGA
chr7	85336476	85336477	chr7:85336477:A:T	rs2696173	A	T	A	Sox1.mouse_HMG_3	9	1	-	5.9521747543187775	-0.9347347534817314	TCAATATCATTTT
chr7	85529749	85529750	chr7:85529750:G:A	rs73201589	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	85529798	85529799	chr7:85529799:C:G	rs10281723	C	G	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	85713706	85713707	chr7:85713707:G:T	rs4349914	G	T	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	86347627	86347628	chr7:86347628:T:C	rs9640570	T	C	C	Sox1.mouse_HMG_3	0	1	-	4.589095543844609	0.5626729981079657	ACAAAAGCATTGG
chr7	86562292	86562293	chr7:86562293:C:G	rs1527767	C	G	G	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr7	86642977	86642978	chr7:86642978:C:T	rs166677	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	86913679	86913680	chr7:86913680:C:T	rs11981220	C	T	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr7	86993466	86993467	chr7:86993467:T:C	rs1767697	T	C	T	Sox1.mouse_HMG_3	10	1	+	6.413957939694065	1.7787451438894504	ACAATACCATTAT
chr7	87420322	87420323	chr7:87420323:A:T	rs151231752	A	T	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr7	87767902	87767903	chr7:87767903:A:G	rs189990168	A	G	a	Sox1.mouse_HMG_3	9	1	-	5.399982310258707	-1.4869271975418001	TCAGTTGCATTGT
chr7	88317661	88317662	chr7:88317662:G:A	rs916849	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr7	88639664	88639665	chr7:88639665:A:G	rs6465147	A	G	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	89024818	89024819	chr7:89024819:C:T	rs10262711	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	89049225	89049226	chr7:89049226:C:A	rs1858816	C	A	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr7	89145733	89145734	chr7:89145734:T:G	rs1014759	T	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	89183672	89183673	chr7:89183673:A:G	rs2189054	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	89487176	89487177	chr7:89487177:C:T	rs6465197	C	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	89678257	89678258	chr7:89678258:A:G	rs2373957	A	G	A	Sox1.mouse_HMG_3	8	1	+	8.45112390452856	1.5423691252133385	TCAATAGCACTGA
chr7	89680614	89680615	chr7:89680615:C:T	rs10952962	C	T	T	Sox1.mouse_HMG_3	3	1	+	7.122973128290861	2.4861104955702795	ACACTTTCATTGT
chr7	89680631	89680632	chr7:89680632:T:C	rs10261097	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	89914841	89914842	chr7:89914842:T:C	rs73211534	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.682993770769013	-1.2257610085462074	TCAATTACCTTGC
chr7	90454190	90454191	chr7:90454191:A:G	rs12704539	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	90760330	90760331	chr7:90760331:G:C	rs2213980	G	C	C	Sox1.mouse_HMG_3	4	1	+	7.626239274300426	7.626239274300426	TCAAGTTCATTGA
chr7	91043588	91043589	chr7:91043589:G:T	rs34435827	G	T	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	91195014	91195015	chr7:91195015:T:C	rs1036172773	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	91242258	91242259	chr7:91242259:C:T	chr7:91242259:C:T	C	T	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	91346816	91346817	chr7:91346817:A:T	rs11762520	A	T	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr7	91657600	91657601	chr7:91657601:A:G	rs113556641	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr7	91692299	91692300	chr7:91692300:T:C	rs1916600	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	92133629	92133630	chr7:92133630:C:T	rs189149722	C	T	C	Sox1.mouse_HMG_3	12	1	+	6.989773145107579	7.075550006854282	TCACTACCATTAC
chr7	92432550	92432551	chr7:92432551:T:C	rs78435186	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	92486547	92486548	chr7:92486548:C:T	rs1468867	C	T	C	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	92719001	92719002	chr7:92719002:T:G	rs73406759	T	G	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	92987653	92987654	chr7:92987654:C:T	rs17699960	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr7	93055819	93055820	chr7:93055820:A:C	rs74586223	A	C	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	93055830	93055831	chr7:93055831:G:T	rs725080	G	T	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	93117647	93117648	chr7:93117648:C:T	rs10233715	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	93923188	93923189	chr7:93923189:A:G	rs7785521	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.824944907037393	-1.0619646007631152	TCATTTCCATTGT
chr7	94041216	94041217	chr7:94041217:A:G	rs10487243	A	G	A	Sox1.mouse_HMG_3	8	1	+	10.420482807054764	3.5117280277395455	TCAATGCCATTAA
chr7	94158100	94158101	chr7:94158101:C:A	rs7357193	C	A	A	Sox1.mouse_HMG_3	12	1	+	5.8028087131286465	8.302026616946495	ACAAAACCATTGC
chr7	94241134	94241135	chr7:94241135:G:A	rs6959259	G	A	A	Sox1.mouse_HMG_3	6	1	+	4.68832088654983	5.164836826205052	ACAATCGCATTGG
chr7	94299407	94299408	chr7:94299408:G:C	rs6465407	G	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr7	94368907	94368908	chr7:94368908:A:G	rs10487253	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	94403440	94403441	chr7:94403441:A:G	rs1858822	A	G	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	94423350	94423351	chr7:94423351:G:A	rs42531	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	94426620	94426621	chr7:94426621:T:C	rs13240759	T	C	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	94698067	94698068	chr7:94698068:C:A	rs873587	C	A	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr7	95067283	95067284	chr7:95067284:A:T	rs75336095	A	T	A	Sox1.mouse_HMG_3	9	1	-	4.804427055858008	-2.082482451942499	TCACAGTCATTGT
chr7	95264579	95264580	chr7:95264580:G:C	rs141660044	G	C	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	95537891	95537892	chr7:95537892:C:T	rs6465467	C	T	T	Sox1.mouse_HMG_3	6	1	+	5.430561681501699	4.917483866391228	ACACTGCCATTAA
chr7	95727775	95727776	chr7:95727776:T:C	rs183512515	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.878204920812509	0.9912954130120011	TTAATATCATTGT
chr7	95794871	95794872	chr7:95794872:A:G	rs74854159	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	95809324	95809325	chr7:95809325:G:T	rs1478986	G	T	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr7	95916806	95916807	chr7:95916807:A:G	rs4729224	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr7	96648935	96648936	chr7:96648936:T:C	rs10236162	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	96838487	96838488	chr7:96838488:T:C	rs10269386	T	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr7	97400843	97400844	chr7:97400844:T:C	rs12668879	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	98358188	98358189	chr7:98358189:C:T	rs1468339	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	98399824	98399825	chr7:98399825:A:C	rs1045156814	A	C	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	98399841	98399842	chr7:98399842:T:C	rs74416888	T	C	T	Sox1.mouse_HMG_3	9	1	+	10.416494864929174	3.529585357128668	TCAATTTCATTAA
chr7	98810134	98810135	chr7:98810135:C:T	rs10245517	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr7	98942499	98942500	chr7:98942500:T:C	rs2237598	T	C	C	Sox1.mouse_HMG_3	8	1	-	6.083693778361761	-0.82506100095346	ACAATTACAGTGT
chr7	98986952	98986953	chr7:98986953:T:G	rs170186	T	G	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	99003596	99003597	chr7:99003597:A:G	rs563675641	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.795811862368801	0.1605990665641872	ACAATGCCGTTGA
chr7	99003620	99003621	chr7:99003621:T:C	rs73161950	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	99220141	99220142	chr7:99220142:G:C	rs57786744	G	C	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	99220173	99220174	chr7:99220174:T:A	rs9886136	T	A	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	99409807	99409808	chr7:99409808:G:C	rs1452015870	G	C	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	99409812	99409813	chr7:99409813:T:C	chr7:99409813:T:C	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	99453363	99453364	chr7:99453364:G:A	rs45441991	G	A	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	99573825	99573826	chr7:99573826:C:T	rs952319	C	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr7	99849178	99849179	chr7:99849179:A:G	rs679320	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	100189340	100189341	chr7:100189341:G:T	rs11764176	G	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	100691786	100691787	chr7:100691787:T:A	rs530244119	T	A	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	100723162	100723163	chr7:100723163:A:G	rs189775061	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	101032694	101032695	chr7:101032695:G:A	rs56103274	G	A	-	Sox1.mouse_HMG_3	7	1	-	6.117825369696906	2.485357878601715	TCACTAGCAGTGG
chr7	101139178	101139179	chr7:101139179:G:A	rs1050955	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	101218927	101218928	chr7:101218928:C:G	rs10487887	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	101593925	101593926	chr7:101593926:G:A	rs12113459	G	A	g	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	101853110	101853111	chr7:101853111:T:C	rs2970458	T	C	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	101863181	101863182	chr7:101863182:A:G	rs75577283	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	101873961	101873962	chr7:101873962:T:C	rs11768899	T	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr7	101898433	101898434	chr7:101898434:A:C	rs13229243	A	C	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	101982219	101982220	chr7:101982220:G:A	rs116348207	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	102071624	102071625	chr7:102071625:C:T	rs10234321	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	102106410	102106411	chr7:102106411:G:T	rs10271376	G	T	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr7	102111976	102111977	chr7:102111977:A:G	rs980567029	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	102122713	102122714	chr7:102122714:A:G	rs781975895	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.707446152476873	-1.1794633553236333	TCAATTACATTTC
chr7	102164739	102164740	chr7:102164740:A:G	rs6976947	A	G	G	Sox1.mouse_HMG_3	10	1	-	4.470712274696265	-0.16450052110834945	GCAATTACAGTGA
chr7	102203617	102203618	chr7:102203618:A:G	rs6465852	A	G	G	Sox1.mouse_HMG_3	6	1	+	10.856277120870663	10.37976118121544	TTAATAACATTGA
chr7	102390613	102390614	chr7:102390614:T:G	rs111820855	T	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	102748785	102748786	chr7:102748786:A:G	rs11983460	A	G	N	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	102748812	102748813	chr7:102748813:T:A	rs187269668	T	A	N	Sox1.mouse_HMG_3	5	1	-	5.574931511169902	4.851348613087694	TCAAGACCATTGG
chr7	102856146	102856147	chr7:102856147:G:T	rs2215040	G	T	T	Sox1.mouse_HMG_3	7	1	+	5.233157863379317	8.480426762748733	TCAATTTGATTGT
chr7	102860646	102860647	chr7:102860647:T:G	rs58191643	T	G	G	Sox1.mouse_HMG_3	6	1	-	5.367408376929049	5.315855034052511	TCATTGACATTGT
chr7	103133772	103133773	chr7:103133773:T:C	rs79775118	T	C	t	Sox1.mouse_HMG_3	2	1	-	5.876498249913929	-1.03225652940129	TCATTTACATTGT
chr7	103614475	103614476	chr7:103614476:T:C	rs147883951	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	103811525	103811526	chr7:103811526:T:C	rs575704640	T	C	t	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	103826686	103826687	chr7:103826687:T:C	rs11977571	T	C	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr7	104151167	104151168	chr7:104151168:T:C	rs2299408	T	C	T	Sox1.mouse_HMG_3	3	1	-	8.453731014721706	1.6527038528047018	TCAATAGCATTTA
chr7	104176536	104176537	chr7:104176537:C:G	rs367967771	C	G	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	104231080	104231081	chr7:104231081:G:T	rs6971455	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr7	104267721	104267722	chr7:104267722:C:A	rs4729988	C	A	A	Sox1.mouse_HMG_3	1	1	+	6.923155329320872	0.020402541961525467	ACAATTCAATTGA
chr7	104706864	104706865	chr7:104706865:A:G	rs6966224	A	G	a	Sox1.mouse_HMG_3	3	1	+	5.2333867804781935	-1.5676403814388133	ACAATTCCATTCT
chr7	105024548	105024549	chr7:105024549:T:G	chr7:105024549:T:G	T	G	T	Sox1.mouse_HMG_3	9	1	+	7.348658531820989	3.580583494708458	TCAATTATATTAA
chr7	105427056	105427057	chr7:105427057:A:G	rs6959366	A	G	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr7	105427058	105427059	chr7:105427059:A:G	rs6959367	A	G	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	105996011	105996012	chr7:105996012:G:A	rs2072162	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr7	106157458	106157459	chr7:106157459:T:C	rs176526	T	C	C	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr7	106204421	106204422	chr7:106204422:C:T	rs113740057	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	106332485	106332486	chr7:106332486:T:C	rs4730163	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	106380807	106380808	chr7:106380808:G:A	rs179883	G	A	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr7	106420493	106420494	chr7:106420494:T:C	rs73723440	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	106469035	106469036	chr7:106469036:A:G	rs2097939	A	G	G	Sox1.mouse_HMG_3	5	1	-	5.365113835930792	1.5527092809136074	ACAAGTACATTGA
chr7	106523869	106523870	chr7:106523870:G:A	rs17367541	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr7	106568089	106568090	chr7:106568090:T:G	rs41471551	T	G	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	106781269	106781270	chr7:106781270:A:G	rs73186244	A	G	A	Sox1.mouse_HMG_3	10	1	-	12.591748550084231	7.956535754279617	TCAATTACATTGC
chr7	106998768	106998769	chr7:106998769:A:T	rs940936	A	T	A	Sox1.mouse_HMG_3	10	1	-	4.340099048207852	-2.5599969734067956	TCAATCCCAATGA
chr7	107029842	107029843	chr7:107029843:G:A	rs6946733	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	107039311	107039312	chr7:107039312:C:T	rs79940347	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.617826096345867	1.9853586052506746	TCTATAACATTGG
chr7	107405254	107405255	chr7:107405255:A:G	rs10487272	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	107946025	107946026	chr7:107946026:T:C	rs73412519	T	C	C	Sox1.mouse_HMG_3	4	1	+	5.566272753469329	-1.333823268145318	TCTATACCATTGG
chr7	108099908	108099909	chr7:108099909:T:C	rs73197610	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	108181951	108181952	chr7:108181952:G:A	rs2142325	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	108203503	108203504	chr7:108203504:A:G	rs10953560	A	G	A	Sox1.mouse_HMG_3	5	1	+	13.315331448166441	12.082658677099351	TCAATAACATTGC
chr7	108497221	108497222	chr7:108497222:T:C	rs10250374	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.844725746465253	-0.06402903284996642	TTAATTACATTGG
chr7	109231875	109231876	chr7:109231876:T:C	rs148784959	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr7	109882581	109882582	chr7:109882582:T:C	rs1270808780	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	110065365	110065366	chr7:110065366:T:G	rs1525512	T	G	T	Sox1.mouse_HMG_3	2	1	-	5.927722372610916	-0.9810324067043055	TCAATATCGTTGT
chr7	110076721	110076722	chr7:110076722:G:A	rs140432302	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr7	110156724	110156725	chr7:110156725:A:G	rs1722061	A	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	110187580	110187581	chr7:110187581:G:T	rs1722089	G	T	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr7	110337771	110337772	chr7:110337772:A:G	rs10257748	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	110507687	110507688	chr7:110507688:A:C	rs10255144	A	C	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	110539732	110539733	chr7:110539733:A:G	rs55735006	A	G	A	Sox1.mouse_HMG_3	9	1	-	11.700578699558429	4.813669191757924	ACAATTTCATTGA
chr7	110647648	110647649	chr7:110647649:G:A	rs11975572	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	111026574	111026575	chr7:111026575:G:A	rs17158262	G	A	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	111093104	111093105	chr7:111093105:T:C	rs980362701	T	C	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	111711455	111711456	chr7:111711456:T:C	rs10487331	T	C	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	112112791	112112792	chr7:112112792:C:G	rs2560656	C	G	G	Sox1.mouse_HMG_3	1	1	+	7.425962264574686	0.5232094772153428	TCAATCTCATTGG
chr7	112132459	112132460	chr7:112132460:T:C	rs78135136	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	112263349	112263350	chr7:112263350:A:C	rs79755372	A	C	A	Sox1.mouse_HMG_3	5	1	-	8.430354776221796	7.921264903236915	TCAATTCCATTAC
chr7	112291317	112291318	chr7:112291318:G:T	rs56675883	G	T	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr7	112356896	112356897	chr7:112356897:T:C	rs12113634	T	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	112449505	112449506	chr7:112449506:T:C	rs4463358	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.02670590309101	-0.8602036047094974	TCACCTACATTGA
chr7	112449517	112449518	chr7:112449518:A:T	rs796840072	A	T	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr7	112760004	112760005	chr7:112760005:A:G	rs10271752	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.804612899383746	-2.1041418799314764	TCAATAACATAAA
chr7	112789684	112789685	chr7:112789685:C:T	rs188577504	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr7	113343792	113343793	chr7:113343793:T:C	rs12705857	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr7	113663202	113663203	chr7:113663203:T:C	rs7802812	T	C	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	114484604	114484605	chr7:114484605:C:G	rs6974757	C	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr7	114660661	114660662	chr7:114660662:T:C	rs12154391	T	C	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr7	114712234	114712235	chr7:114712235:G:A	rs623127	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr7	114757189	114757190	chr7:114757190:T:C	rs7785574	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr7	114789192	114789193	chr7:114789193:A:T	rs148003850	A	T	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	115034264	115034265	chr7:115034265:G:A	rs80143846	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr7	115491823	115491824	chr7:115491824:C:T	rs34318598	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	115779829	115779830	chr7:115779830:T:C	rs76935609	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr7	116180504	116180505	chr7:116180505:A:C	rs73454551	A	C	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	116284820	116284821	chr7:116284821:A:T	rs17138574	A	T	T	Sox1.mouse_HMG_3	8	1	+	5.753112431914902	-1.1556423474003186	TCACTTTCATTAC
chr7	116327835	116327836	chr7:116327836:A:G	rs537097528	A	G	A	Sox1.mouse_HMG_3	4	1	-	5.137719535556537	-1.7623764860581113	TCAATAACTGTGA
chr7	116404511	116404512	chr7:116404512:A:G	rs1918923	A	G	A	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr7	116547635	116547636	chr7:116547636:A:C	rs12668226	A	C	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr7	116566610	116566611	chr7:116566611:A:G	rs2052106	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.838889293661605	-1.0698654856536152	TCACTTTCATTAT
chr7	116566839	116566840	chr7:116566840:T:G	rs11979486	T	G	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr7	116584780	116584781	chr7:116584781:A:G	rs6466590	A	G	A	Sox1.mouse_HMG_3	3	1	-	4.955092822643554	9.591955455364134	ACATTGACATTGA
chr7	116765332	116765333	chr7:116765333:T:C	rs2237717	T	C	C	Sox1.mouse_HMG_3	0	1	-	9.536414170362006	5.509991624625366	ACACTTTCATTGA
chr7	116782159	116782160	chr7:116782160:C:T	rs6966012	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	117061753	117061754	chr7:117061754:G:A	rs3758628	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr7	117226224	117226225	chr7:117226225:G:A	rs539005335	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr7	117492864	117492865	chr7:117492865:A:G	rs11772396	A	G	a	Sox1.mouse_HMG_3	9	1	-	9.979237718442246	3.092328210641738	TCAAATGCATTGA
chr7	117908242	117908243	chr7:117908243:T:G	rs7789130	T	G	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	118452310	118452311	chr7:118452311:A:C	rs7808314	A	C	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr7	118859208	118859209	chr7:118859209:A:G	rs13228009	A	G	A	Sox1.mouse_HMG_3	8	1	+	8.909450374718402	2.0006955954031826	TCAATTACAGTGT
chr7	119565686	119565687	chr7:119565687:G:A	rs73719951	G	A	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	119565687	119565688	chr7:119565688:C:T	rs73719952	C	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr7	119713439	119713440	chr7:119713440:G:A	rs7777009	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr7	119756400	119756401	chr7:119756401:C:A	rs78935602	C	A	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr7	120282609	120282610	chr7:120282610:A:G	rs184164946	A	G	A	Sox1.mouse_HMG_3	8	1	+	6.086039968268302	-0.8227148110469185	AAAATAACATTGA
chr7	120794698	120794699	chr7:120794699:A:G	rs75293827	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.579090369525403	-2.2219367923916002	TGAATATCAGTGA
chr7	120950099	120950100	chr7:120950100:A:G	rs557968619	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	120990214	120990215	chr7:120990215:T:G	rs2721361	T	G	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr7	120990245	120990246	chr7:120990246:C:G	rs12673175	C	G	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr7	121081579	121081580	chr7:121081580:G:A	rs151209936	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr7	121383506	121383507	chr7:121383507:A:G	rs12706338	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr7	121515378	121515379	chr7:121515379:T:C	rs2030990	T	C	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr7	121716888	121716889	chr7:121716889:A:G	rs6466804	A	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr7	122679471	122679472	chr7:122679472:G:A	rs77466975	G	A	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr7	123556663	123556664	chr7:123556664:T:C	rs73222282	T	C	t	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	124208386	124208387	chr7:124208387:C:A	rs6974549	C	A	C	Sox1.mouse_HMG_3	11	1	-	6.412578660807096	-0.4717237368002629	TGAATAACATTGC
chr7	124566409	124566410	chr7:124566410:A:G	rs140861262	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr7	124720656	124720657	chr7:124720657:C:T	rs702426	C	T	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	124911870	124911871	chr7:124911871:T:C	rs7794631	T	C	C	Sox1.mouse_HMG_3	3	1	-	7.621568458725443	0.820541296808438	TCAATGCCCTTGA
chr7	125046453	125046454	chr7:125046454:A:G	rs6975148	A	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr7	125922136	125922137	chr7:125922137:T:C	rs9886176	T	C	t	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	126103951	126103952	chr7:126103952:G:C	rs71576263	G	C	G	Sox1.mouse_HMG_3	7	1	-	5.281526031045548	-1.598210359419063	TCAATGACAATGT
chr7	126150403	126150404	chr7:126150404:T:C	rs498875	T	C	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	126569591	126569592	chr7:126569592:A:T	rs2299467	A	T	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr7	127245664	127245665	chr7:127245665:A:G	rs17862333	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	127704625	127704626	chr7:127704626:G:A	rs1881084	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	127779182	127779183	chr7:127779183:A:G	rs6968199	A	G	A	Sox1.mouse_HMG_3	9	1	-	9.032002787791763	2.1450932799912565	TCACTACCATTCA
chr7	128066628	128066629	chr7:128066629:G:T	rs3757755	G	T	G	Sox1.mouse_HMG_3	11	1	+	7.242737241062088	0.35843484345472776	TTAATTGCATTGT
chr7	128066633	128066634	chr7:128066634:T:C	rs3757754	T	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	128099668	128099669	chr7:128099669:G:T	rs6954161	G	T	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	128101172	128101173	chr7:128101173:T:G	rs7811971	T	G	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr7	128109085	128109086	chr7:128109086:A:T	rs74930402	A	T	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr7	128353606	128353607	chr7:128353607:C:G	rs7810319	C	G	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr7	128459126	128459127	chr7:128459127:A:G	rs2562729	A	G	a	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	128878636	128878637	chr7:128878637:T:A	rs191095949	T	A	T	Sox1.mouse_HMG_3	3	1	-	4.69738795812891	-2.103639203788097	TCAATGGCTTTGC
chr7	129098489	129098490	chr7:129098490:C:T	rs4728152	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr7	129354589	129354590	chr7:129354590:T:C	rs78676283	T	C	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr7	129559486	129559487	chr7:129559487:G:A	rs10245560	G	A	G	Sox1.mouse_HMG_3	6	1	+	9.99552021027608	10.472036149931302	TCAATGGCATTAA
chr7	129606926	129606927	chr7:129606927:T:C	rs142538960	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	129865225	129865226	chr7:129865226:T:G	rs527712450	T	G	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr7	130075200	130075201	chr7:130075201:G:T	rs72607759	G	T	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	130272596	130272597	chr7:130272597:C:T	rs7778449	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr7	130276674	130276675	chr7:130276675:T:C	rs17590	T	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	130334359	130334360	chr7:130334360:C:T	rs7798773	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr7	130418549	130418550	chr7:130418550:T:A	rs115359306	T	A	T	Sox1.mouse_HMG_3	12	1	-	4.34762463825008	1.9341835961789342	TCAATAACATGCA
chr7	130893031	130893032	chr7:130893032:G:C	rs10954290	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.086166192679999	-1.8165865946793445	TCTATACCAGTGA
chr7	130898801	130898802	chr7:130898802:C:T	rs117291308	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr7	130904639	130904640	chr7:130904640:C:T	rs147046488	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr7	130904640	130904641	chr7:130904641:G:A	rs2278747	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	131111074	131111075	chr7:131111075:T:C	rs1439795	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	131182879	131182880	chr7:131182880:T:C	rs2250234	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr7	131182884	131182885	chr7:131182885:G:T	rs2250235	G	T	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	131182922	131182923	chr7:131182923:G:T	rs326226	G	T	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr7	131235788	131235789	chr7:131235789:G:A	rs116057203	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	131328729	131328730	chr7:131328730:C:T	rs114277104	C	T	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	131509495	131509496	chr7:131509496:G:C	rs35893129	G	C	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	131515143	131515144	chr7:131515144:C:G	rs2433294	C	G	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	131775850	131775851	chr7:131775851:C:T	rs60381542	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.4960153346923715	-0.4622568964212541	TCACTCCCATTCA
chr7	132081123	132081124	chr7:132081124:C:T	rs10249435	C	T	c	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	132176655	132176656	chr7:132176656:A:G	rs7782294	A	G	g	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	132182073	132182074	chr7:132182074:A:G	rs3734984	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	132305595	132305596	chr7:132305596:C:T	chr7:132305596:C:T	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr7	132440098	132440099	chr7:132440099:G:C	rs192709839	G	C	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr7	132454146	132454147	chr7:132454147:A:G	rs156940	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	132508796	132508797	chr7:132508797:A:T	rs156963	A	T	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr7	132682627	132682628	chr7:132682628:T:C	rs924371	T	C	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr7	132849183	132849184	chr7:132849184:T:C	rs11763065	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.9569696785604	-0.943126343054248	ACAATACCATTCT
chr7	133057072	133057073	chr7:133057073:G:C	rs57675453	G	C	G	Sox1.mouse_HMG_3	9	1	+	4.488243240745808	1.3694087700578335	TCACTGCCAGTAA
chr7	133510665	133510666	chr7:133510666:G:A	rs6966473	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	133753378	133753379	chr7:133753379:A:G	rs35531336	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	133853184	133853185	chr7:133853185:G:C	rs79238907	G	C	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr7	133908423	133908424	chr7:133908424:A:G	rs12707129	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	133946248	133946249	chr7:133946249:C:T	rs62470446	C	T	c	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	134104434	134104435	chr7:134104435:C:T	rs11982121	C	T	-	Sox1.mouse_HMG_3	7	1	+	5.118362612782006	1.4858951216868124	TCTATTTCATTGC
chr7	134388375	134388376	chr7:134388376:A:G	rs1628232	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr7	134759368	134759369	chr7:134759369:T:C	rs1026275	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	134828643	134828644	chr7:134828644:G:A	rs11980803	G	A	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr7	135291668	135291669	chr7:135291669:A:G	rs55895665	A	G	A	Sox1.mouse_HMG_3	10	1	-	4.319438202027949	-0.31577459377666495	TCCATAGCATTAA
chr7	135540226	135540227	chr7:135540227:A:G	rs7792729	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.065611483499831	-1.7354156784171744	ACAAAAACATTGG
chr7	135721581	135721582	chr7:135721582:G:A	rs111545354	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	135798019	135798020	chr7:135798020:T:C	rs11762316	T	C	T	Sox1.mouse_HMG_3	8	1	-	7.091792704892237	0.1830379255770178	TTAATAGCATTGG
chr7	135798122	135798123	chr7:135798123:A:T	rs62491563	A	T	A	Sox1.mouse_HMG_3	6	1	-	5.375507759764879	5.940138917751886	ACAAAATCATTGT
chr7	136086453	136086454	chr7:136086454:G:A	rs879435933	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr7	136117641	136117642	chr7:136117642:C:G	rs36070085	C	G	C	Sox1.mouse_HMG_3	1	1	+	11.27133807391301	4.368585286553667	TCAATTCCAGTGA
chr7	136117668	136117669	chr7:136117669:C:T	rs35239688	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr7	137246080	137246081	chr7:137246081:T:G	rs322303	T	G	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr7	138161934	138161935	chr7:138161935:T:A	rs74734889	T	A	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	138161940	138161941	chr7:138161941:A:T	rs560661099	A	T	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr7	138226608	138226609	chr7:138226609:C:G	rs2718118	C	G	.	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr7	138593677	138593678	chr7:138593678:C:A	rs78948225	C	A	C	Sox1.mouse_HMG_3	3	1	-	5.3810546989720915	5.3810546989720915	TCAGTAATATTGA
chr7	138754102	138754103	chr7:138754103:T:C	rs411467	T	C	C	Sox1.mouse_HMG_3	10	1	+	3.9086373856235563	-0.7265754101810578	TCAATGGCTTTGG
chr7	138782008	138782009	chr7:138782009:T:G	rs55962121	T	G	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr7	139034743	139034744	chr7:139034744:C:T	rs78981235	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	139034751	139034752	chr7:139034752:G:C	rs114393480	G	C	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	139647814	139647815	chr7:139647815:T:C	rs73156868	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	139672948	139672949	chr7:139672949:T:G	rs74733514	T	G	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr7	139820099	139820100	chr7:139820100:C:T	rs79724040	C	T	C	Sox1.mouse_HMG_3	3	1	+	5.294768989699401	0.6579063569788206	TCACTCCCAGTGA
chr7	139981723	139981724	chr7:139981724:T:C	rs2299899	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.6331769225391835	-2.2755778567760365	ACAATCCCAGTGA
chr7	140267432	140267433	chr7:140267433:G:A	rs1558152	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.380907459938081	1.7484399688428884	ACAATTACATTTA
chr7	140376303	140376304	chr7:140376304:T:A	rs4368896	T	A	A	Sox1.mouse_HMG_3	10	1	+	10.489574851809797	3.589478830195151	ACAATAACATTGC
chr7	140524223	140524224	chr7:140524224:A:G	rs6948786	A	G	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	140558396	140558397	chr7:140558397:A:G	rs538368550	A	G	A	Sox1.mouse_HMG_3	11	1	-	5.533409654113418	7.850883359601214	TCACTGACATTTA
chr7	141013566	141013567	chr7:141013567:C:T	rs3805116	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	141317842	141317843	chr7:141317843:G:T	rs2366081	G	T	T	Sox1.mouse_HMG_3	6	1	-	5.837282027955107	5.888835370831645	TCAAAACAATTGA
chr7	141425777	141425778	chr7:141425778:T:A	rs1860282	T	A	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	141425795	141425796	chr7:141425796:T:C	rs1181731	T	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	141736589	141736590	chr7:141736590:C:T	rs11760572	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	142053692	142053693	chr7:142053693:C:A	rs76267620	C	A	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	142136068	142136069	chr7:142136069:A:G	rs6944985	A	G	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr7	142364442	142364443	chr7:142364443:T:A	rs1074128	T	A	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr7	142397476	142397477	chr7:142397477:A:C	rs2855924	A	C	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr7	142452515	142452516	chr7:142452516:A:G	rs2734175	A	G	.	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr7	142480978	142480979	chr7:142480979:A:G	rs1339971160	A	G	.	Sox1.mouse_HMG_3	9	1	-	5.356455078230219	-1.5304544295702889	ACCATTACATTGA
chr7	142483027	142483028	chr7:142483028:G:A	rs376682174	G	A	.	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr7	142484587	142484588	chr7:142484588:C:A	rs6958040	C	A	.	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr7	142484616	142484617	chr7:142484617:T:C	rs6943682	T	C	.	Sox1.mouse_HMG_3	3	1	-	5.379835092993025	-1.4211920689239812	TCAAAGACATTCA
chr7	142754430	142754431	chr7:142754431:G:T	rs201188438	G	T	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	142762030	142762031	chr7:142762031:G:A	rs1303264691	G	A	G	Sox1.mouse_HMG_3	9	1	+	4.579090369525403	1.4602558988374292	TGAATATCAGTGA
chr7	142762415	142762416	chr7:142762416:G:T	rs773808301	G	T	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr7	142772987	142772988	chr7:142772988:A:G	rs3847026	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr7	142941609	142941610	chr7:142941610:T:C	rs6949788	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	142965404	142965405	chr7:142965405:C:T	rs7793035	C	T	T	Sox1.mouse_HMG_3	1	1	+	3.937620697819106	-1.02065153329452	TCGATTGCAGTGA
chr7	143158299	143158300	chr7:143158300:G:A	rs28855384	G	A	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	143343481	143343482	chr7:143343482:T:A	rs2367944	T	A	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr7	143936063	143936064	chr7:143936064:T:C	rs13235235	T	C	.	Sox1.mouse_HMG_3	2	1	+	5.208127416654298	5.208127416654298	TCTATGCCATTGT
chr7	144214241	144214242	chr7:144214242:C:T	rs62483817	C	T	N	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr7	144665768	144665769	chr7:144665769:A:C	rs6942497	A	C	C	Sox1.mouse_HMG_3	9	1	-	13.085753664800855	9.317678627688323	TCACTATCATTGA
chr7	144724797	144724798	chr7:144724798:C:G	rs192984936	C	G	C	Sox1.mouse_HMG_3	3	1	-	4.045348315217321	8.682210947937902	TCAGTTGCAGTGA
chr7	144924204	144924205	chr7:144924205:C:G	rs2699464	C	G	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr7	145005547	145005548	chr7:145005548:A:C	rs6960872	A	C	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	145664933	145664934	chr7:145664934:A:T	rs2191275	A	T	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr7	145808898	145808899	chr7:145808899:T:C	rs7799203	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.521864254872543	-2.3868905244426766	TCATTTACAGTGA
chr7	145845981	145845982	chr7:145845982:T:C	rs6975640	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	146788090	146788091	chr7:146788091:T:C	rs1860846	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	146949257	146949258	chr7:146949258:T:C	rs33954628	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.816276301951071	-1.9847508599659336	ACAATTTCATTTA
chr7	146954367	146954368	chr7:146954368:A:C	rs13221567	A	C	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	147276877	147276878	chr7:147276878:A:G	rs17170387	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr7	147337362	147337363	chr7:147337363:C:G	rs35444249	C	G	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr7	147340035	147340036	chr7:147340036:T:C	rs899619	T	C	C	Sox1.mouse_HMG_3	3	1	-	4.390175619624177	-2.4108515422928285	CCAATGCCATTGG
chr7	147478719	147478720	chr7:147478720:C:T	rs111430821	C	T	C	Sox1.mouse_HMG_3	3	1	+	3.5238515359179874	-1.1130110968025944	GCACTTCCATTGC
chr7	147568449	147568450	chr7:147568450:A:G	rs10952695	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	147639254	147639255	chr7:147639255:G:C	rs372580822	G	C	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	147884711	147884712	chr7:147884712:A:C	rs2708244	A	C	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	147884744	147884745	chr7:147884745:C:T	rs2538983	C	T	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr7	148353053	148353054	chr7:148353054:A:G	rs1730433	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	148428282	148428283	chr7:148428283:A:G	rs574048324	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr7	148482796	148482797	chr7:148482797:G:A	rs62506980	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr7	148624781	148624782	chr7:148624782:G:A	rs530686524	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	149321663	149321664	chr7:149321664:G:A	rs2003500	G	A	A	Sox1.mouse_HMG_3	5	1	+	6.150419110790395	7.383091881857483	TCACTGACAGTGC
chr7	150503926	150503927	chr7:150503927:G:T	rs79885761	G	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr7	150561334	150561335	chr7:150561335:A:C	rs1879865	A	C	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr7	150587594	150587595	chr7:150587595:C:T	rs11486916	C	T	T	Sox1.mouse_HMG_3	7	1	+	7.069496125193776	3.437028634098585	TCAAAAACATTAA
chr7	150715202	150715203	chr7:150715203:C:G	rs1558479	C	G	C	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	150715228	150715229	chr7:150715229:C:T	rs10488372	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	150791527	150791528	chr7:150791528:A:G	rs2302479	A	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr7	150824007	150824008	chr7:150824008:A:G	rs7787744	A	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr7	151214933	151214934	chr7:151214934:T:C	rs55866446	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.078717945093276	-0.8081915627072322	TCAAACTCATTGA
chr7	151553650	151553651	chr7:151553651:T:C	rs2160002	T	C	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	151690862	151690863	chr7:151690863:G:A	rs1358403293	G	A	-	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	151690877	151690878	chr7:151690878:C:T	rs2024266	C	T	-	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr7	151709253	151709254	chr7:151709254:A:C	rs12672354	A	C	-	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr7	151709362	151709363	chr7:151709363:A:T	rs55779150	A	T	-	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr7	151776424	151776425	chr7:151776425:T:C	rs7792110	T	C	C	Sox1.mouse_HMG_3	3	1	-	3.8205221672917706	-2.9805049946252353	TCAATGTCCTTGG
chr7	151821491	151821492	chr7:151821492:G:A	rs59048436	G	A	G	Sox1.mouse_HMG_3	6	1	+	4.719233229643624	5.195749169298846	TCAATGGCACTGC
chr7	151824468	151824469	chr7:151824469:C:T	rs139958503	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr7	151844836	151844837	chr7:151844837:A:G	rs77913872	A	G	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr7	151896050	151896051	chr7:151896051:T:C	rs10952326	T	C	T	Sox1.mouse_HMG_3	6	1	+	3.6777809816677878	4.190858796778258	TCACTATCCTTGC
chr7	151901209	151901210	chr7:151901210:C:T	rs75793218	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr7	151916352	151916353	chr7:151916353:G:A	rs11973357	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	151931774	151931775	chr7:151931775:C:T	rs6948413	C	T	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	152071108	152071109	chr7:152071109:G:A	rs112043662	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr7	152910794	152910795	chr7:152910795:G:A	rs6950409	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr7	152910803	152910804	chr7:152910804:A:G	rs6949975	A	G	G	Sox1.mouse_HMG_3	8	1	+	2.980031297225883	-3.9287234820893375	TCACTGCCACTGC
chr7	153081644	153081645	chr7:153081645:A:G	rs10952385	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	153443466	153443467	chr7:153443467:C:T	chr7:153443467:C:T	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	153519785	153519786	chr7:153519786:C:A	rs75253742	C	A	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr7	154505401	154505402	chr7:154505402:G:A	rs10952489	G	A	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr7	154594062	154594063	chr7:154594063:T:C	rs6964189	T	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr7	154778139	154778140	chr7:154778140:G:A	rs34259212	G	A	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	154791793	154791794	chr7:154791794:T:C	rs73500233	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.669862353601886	-2.1311648083151185	TCAACAGCAGTGA
chr7	154832199	154832200	chr7:154832200:A:G	rs1464913	A	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr7	154832222	154832223	chr7:154832223:G:T	rs76880781	G	T	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	154953350	154953351	chr7:154953351:A:C	rs6960009	A	C	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr7	155105033	155105034	chr7:155105034:T:C	rs721039	T	C	T	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr7	155164903	155164904	chr7:155164904:G:C	rs6965535	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr7	155211036	155211037	chr7:155211037:T:C	rs11766971	T	C	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr7	155287023	155287024	chr7:155287024:G:A	rs9801301	G	A	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr7	155390092	155390093	chr7:155390093:C:G	rs9647682	C	G	C	Sox1.mouse_HMG_3	11	1	-	6.750288801173218	2.183460109053654	TCACCAACATTGA
chr7	155390105	155390106	chr7:155390106:C:T	rs12534900	C	T	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	155476532	155476533	chr7:155476533:G:A	rs73163355	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr7	156000092	156000093	chr7:156000093:C:T	rs62480441	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr7	156000111	156000112	chr7:156000112:C:T	rs115730087	C	T	C	Sox1.mouse_HMG_3	5	1	+	7.514077482906471	11.326482037923656	TCAATCGCATTGG
chr7	156203899	156203900	chr7:156203900:T:C	rs10487557	T	C	C	Sox1.mouse_HMG_3	10	1	+	4.609272739797124	-0.02594005600748983	TCAATGTCCTTGC
chr7	156223531	156223532	chr7:156223532:T:C	rs1922086	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	156232129	156232130	chr7:156232130:T:A	rs1175443	T	A	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr7	156237322	156237323	chr7:156237323:C:T	rs73739624	C	T	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr7	156356807	156356808	chr7:156356808:C:G	rs7798044	C	G	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr7	156365151	156365152	chr7:156365152:G:T	rs57884462	G	T	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	156368169	156368170	chr7:156368170:C:T	rs34977094	C	T	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr7	156368188	156368189	chr7:156368189:T:C	rs34810003	T	C	T	Sox1.mouse_HMG_3	6	1	-	4.470712274696265	3.994196335041042	GCAATTACAGTGA
chr7	156368202	156368203	chr7:156368203:T:G	rs34245976	T	G	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr7	156457120	156457121	chr7:156457121:C:T	rs12697963	C	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr7	156891889	156891890	chr7:156891890:T:G	rs57869296	T	G	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr7	156908438	156908439	chr7:156908439:C:A	rs73170011	C	A	C	Sox1.mouse_HMG_3	11	1	-	4.804427055858008	-2.0798753417493505	TCACAGTCATTGT
chr7	157128465	157128466	chr7:157128466:A:T	rs7791453	A	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr7	157151765	157151766	chr7:157151766:A:G	rs3808317	A	G	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr7	157267133	157267134	chr7:157267134:C:A	rs4262225	C	A	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr7	157344699	157344700	chr7:157344700:C:G	rs73497154	C	G	c	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr7	157493774	157493775	chr7:157493775:A:G	rs73744951	A	G	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr7	157569007	157569008	chr7:157569008:C:T	rs144237368	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr7	157569041	157569042	chr7:157569042:T:C	rs221294	T	C	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr7	157968914	157968915	chr7:157968915:G:A	rs76630763	G	A	G	Sox1.mouse_HMG_3	10	1	-	5.740817882206658	10.37603067801127	TCACTTCCATCGC
chr7	157974486	157974487	chr7:157974487:G:A	rs11763881	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr7	158320697	158320698	chr7:158320698:T:G	rs896779	T	G	T	Sox1.mouse_HMG_3	2	1	-	5.933724364566791	-0.9750304147484286	TGAATATCATTGT
chr7	158350493	158350494	chr7:158350494:T:C	rs4909195	T	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr7	158595967	158595968	chr7:158595968:A:C	rs1921303	A	C	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr7	158684317	158684318	chr7:158684318:T:C	rs7794321	T	C	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr7	158684333	158684334	chr7:158684334:T:A	rs4909260	T	A	T	Sox1.mouse_HMG_3	3	1	-	4.333599982402241	-2.4674271795147646	TCTATGCCATTGG
chr7	158705498	158705499	chr7:158705499:G:T	rs77953019	G	T	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr7	158823660	158823661	chr7:158823661:A:G	rs1320879475	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr7	159100501	159100502	chr7:159100502:T:C	rs72621132	T	C	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr8	339568	339569	chr8:339569:T:G	rs78661643	T	G	.	Sox1.mouse_HMG_3	10	1	+	6.721499814697266	-0.17859620691738143	ACAATAACAGTGC
chr8	343367	343368	chr8:343368:A:T	rs6983362	A	T	.	Sox1.mouse_HMG_3	8	1	+	8.468151508237355	1.559396728922136	ACAATGACATTGG
chr8	376674	376675	chr8:376675:T:A	rs11989212	T	A	.	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	394542	394543	chr8:394543:T:C	rs935563	T	C	.	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	615515	615516	chr8:615516:G:A	rs145066056	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	690200	690201	chr8:690201:C:T	rs77271605	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	801822	801823	chr8:801823:T:C	rs4735931	T	C	C	Sox1.mouse_HMG_3	4	1	+	2.95818602571117	-3.9419099959034773	TCACTGCCCTTGC
chr8	801838	801839	chr8:801839:C:T	rs4735932	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	909981	909982	chr8:909982:T:G	rs955980	T	G	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	1087928	1087929	chr8:1087929:G:A	rs73180697	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	1116541	1116542	chr8:1116542:T:A	rs80327531	T	A	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	1289416	1289417	chr8:1289417:A:G	rs13277401	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	1429721	1429722	chr8:1429722:C:G	rs73172522	C	G	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	1429748	1429749	chr8:1429749:C:T	rs12674781	C	T	C	Sox1.mouse_HMG_3	12	1	+	4.959715615077977	5.0454924768246805	TCAATCCCAGTGC
chr8	1560059	1560060	chr8:1560060:G:A	rs10086219	G	A	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	1755402	1755403	chr8:1755403:G:T	rs4595147	G	T	T	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	1886545	1886546	chr8:1886546:A:G	rs747249389	A	G	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr8	1891164	1891165	chr8:1891165:C:G	rs6990264	C	G	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr8	1953447	1953448	chr8:1953448:A:G	rs17683365	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.960221916789303	-1.9266875910112053	TTACTGACATTGC
chr8	1995582	1995583	chr8:1995583:T:C	rs11997759	T	C	C	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr8	2068517	2068518	chr8:2068518:C:G	rs34349056	C	G	c	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr8	2068523	2068524	chr8:2068524:T:C	rs13253580	T	C	g	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	2107591	2107592	chr8:2107592:T:C	rs6988144	T	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr8	2108777	2108778	chr8:2108778:C:T	rs1978898	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	2224574	2224575	chr8:2224575:G:C	rs899411	G	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	2230899	2230900	chr8:2230900:G:A	rs77215738	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	2230927	2230928	chr8:2230928:A:G	rs10107849	A	G	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	2237320	2237321	chr8:2237321:T:A	rs62502201	T	A	T	Sox1.mouse_HMG_3	9	1	+	4.5475686775689095	-2.3393408302315986	TCACTCACATTCA
chr8	2493394	2493395	chr8:2493395:C:T	rs6998131	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr8	2814289	2814290	chr8:2814290:G:C	rs7010216	G	C	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr8	2916604	2916605	chr8:2916605:T:C	rs2604134	T	C	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	3100675	3100676	chr8:3100676:G:C	rs66471223	G	C	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	3113611	3113612	chr8:3113612:A:G	rs56072384	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	3177755	3177756	chr8:3177756:A:G	rs7004481	A	G	G	Sox1.mouse_HMG_3	3	1	+	7.479645622752193	0.6786184608351875	TCAATAACAGTCA
chr8	3177777	3177778	chr8:3177778:T:G	rs58002274	T	G	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	3183716	3183717	chr8:3183717:T:C	rs2589289	T	C	C	Sox1.mouse_HMG_3	10	1	+	7.516755301670923	2.881542505866309	TTAATACCATTGG
chr8	3358762	3358763	chr8:3358763:C:T	rs9774400	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr8	3495789	3495790	chr8:3495790:T:C	rs7843935	T	C	T	Sox1.mouse_HMG_3	3	1	-	9.907404991944293	3.1063778300272897	TCAATGTCATTAA
chr8	3525683	3525684	chr8:3525684:A:G	rs573338135	A	G	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	3771710	3771711	chr8:3771711:C:G	rs143025491	C	G	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	3780200	3780201	chr8:3780201:A:T	rs73658259	A	T	A	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr8	3780219	3780220	chr8:3780220:C:T	rs117082573	C	T	C	Sox1.mouse_HMG_3	3	1	+	5.005599084723014	0.368736452002433	ACACTGGCATTAA
chr8	3780240	3780241	chr8:3780241:T:C	rs73658260	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr8	3780241	3780242	chr8:3780242:T:C	rs969888982	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	3874724	3874725	chr8:3874725:C:T	rs74758087	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	4104170	4104171	chr8:4104171:C:A	rs56712848	C	A	C	Sox1.mouse_HMG_3	9	1	-	4.368585286553667	8.1366603236662	TAAATTCCAGTGA
chr8	4104474	4104475	chr8:4104475:T:G	rs577872609	T	G	T	Sox1.mouse_HMG_3	2	1	-	5.888924965977905	-1.0198298133373158	TCAAATACATTCA
chr8	4122794	4122795	chr8:4122795:A:G	rs7816211	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr8	4123090	4123091	chr8:4123091:T:C	rs17404676	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr8	4213804	4213805	chr8:4213805:C:G	rs1700069	C	G	G	Sox1.mouse_HMG_3	7	1	+	5.5475331976910915	-1.3322031927735192	TAACTTGCATTGA
chr8	4444900	4444901	chr8:4444901:G:C	rs1154064	G	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr8	4445956	4445957	chr8:4445957:G:C	rs1154066	G	C	g	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	4602232	4602233	chr8:4602233:T:A	rs13257897	T	A	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	4614709	4614710	chr8:4614710:G:C	rs2617109	G	C	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	4732534	4732535	chr8:4732535:T:C	rs13255293	T	C	T	Sox1.mouse_HMG_3	8	1	-	12.11523261042901	5.206477831113791	TCAATTGCATTGC
chr8	5173429	5173430	chr8:5173430:T:C	rs35525317	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	5941050	5941051	chr8:5941051:G:C	rs2703280	G	C	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	6025606	6025607	chr8:6025607:T:C	rs17075807	T	C	T	Sox1.mouse_HMG_3	2	1	-	4.9046806317871745	-2.004074147528046	TTACTTTCATTGC
chr8	6135026	6135027	chr8:6135027:G:A	rs56046539	G	A	T	Sox1.mouse_HMG_3	2	1	-	4.7918239202432105	4.7918239202432105	ACCATTTCATTGA
chr8	6277655	6277656	chr8:6277656:C:G	rs73504078	C	G	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr8	6327836	6327837	chr8:6327837:C:T	rs71505115	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr8	6327839	6327840	chr8:6327840:G:C	rs12550696	G	C	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	6464112	6464113	chr8:6464113:T:A	rs145968388	T	A	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	6533305	6533306	chr8:6533306:T:C	rs145792022	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	6547950	6547951	chr8:6547951:C:T	rs111233592	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	6564331	6564332	chr8:6564332:T:C	rs73201303	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	6566470	6566471	chr8:6566471:G:A	rs2442528	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr8	6589334	6589335	chr8:6589335:G:A	rs73509269	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr8	6602321	6602322	chr8:6602322:G:A	rs75521833	G	A	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	6643022	6643023	chr8:6643023:C:T	rs1057091	C	T	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr8	6833813	6833814	chr8:6833814:G:A	rs550982753	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	6833822	6833823	chr8:6833823:A:T	rs79134989	A	T	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	6879673	6879674	chr8:6879674:A:G	rs2741136	A	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	6879712	6879713	chr8:6879713:A:G	rs2741137	A	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr8	6960119	6960120	chr8:6960120:G:T	rs111293704	G	T	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	8273156	8273157	chr8:8273157:A:T	rs76072795	A	T	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	8273167	8273168	chr8:8273168:C:T	chr8:8273168:C:T	C	T	C	Sox1.mouse_HMG_3	5	1	-	5.772327075375063	7.004999846442152	ACACTGCCAGTGA
chr8	8273171	8273172	chr8:8273172:G:A	rs114763371	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.772327075375063	0.8140548442614375	ACACTGCCAGTGA
chr8	8314760	8314761	chr8:8314761:A:G	rs6601689	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	8347538	8347539	chr8:8347539:A:C	rs189952220	A	C	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	8480920	8480921	chr8:8480921:C:G	rs2979193	C	G	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr8	8504056	8504057	chr8:8504057:G:A	rs148430301	G	A	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr8	8525554	8525555	chr8:8525555:C:A	rs7820213	C	A	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	8690131	8690132	chr8:8690132:A:G	rs17684514	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	8860937	8860938	chr8:8860938:G:A	rs115077991	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr8	9009900	9009901	chr8:9009901:G:C	rs2915251	G	C	G	Sox1.mouse_HMG_3	1	1	-	10.67231262272971	3.7695598353703663	TCACTATCATTGT
chr8	9918005	9918006	chr8:9918006:T:C	rs473034	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	10055671	10055672	chr8:10055672:C:T	rs2293090	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	10055678	10055679	chr8:10055679:C:G	rs796413431	C	G	C	Sox1.mouse_HMG_3	11	1	-	5.032441332750334	0.46561264063077124	TCTCTGGCATTGA
chr8	10120549	10120550	chr8:10120550:G:T	rs10503402	G	T	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr8	10135013	10135014	chr8:10135014:T:C	rs17151175	T	C	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	10221261	10221262	chr8:10221262:G:A	rs12546027	G	A	G	Sox1.mouse_HMG_3	6	1	+	3.937620697819106	4.4141366374743285	TCAATTGCTGTGA
chr8	10267141	10267142	chr8:10267142:A:T	rs117627230	A	T	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr8	10332966	10332967	chr8:10332967:G:A	rs796413946	G	A	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr8	10349907	10349908	chr8:10349908:C:T	rs35309707	C	T	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr8	10417316	10417317	chr8:10417317:T:G	rs17710558	T	G	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	10703644	10703645	chr8:10703645:T:C	rs6601506	T	C	C	Sox1.mouse_HMG_3	2	1	-	4.805115575527125	-2.103639203788096	TCAGTGGCATTGC
chr8	10709319	10709320	chr8:10709320:T:G	rs12676319	T	G	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr8	11013536	11013537	chr8:11013537:A:G	rs6990395	A	G	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	11124899	11124900	chr8:11124900:C:G	rs7830569	C	G	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	11124911	11124912	chr8:11124912:G:A	rs147854004	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	11280310	11280311	chr8:11280311:C:T	rs2572419	C	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr8	11599094	11599095	chr8:11599095:A:G	rs79802030	A	G	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr8	11660205	11660206	chr8:11660206:C:G	rs4394350	C	G	G	Sox1.mouse_HMG_3	12	1	+	5.118362612782006	4.329612040276652	TCCATTTCATTGC
chr8	11692274	11692275	chr8:11692275:T:C	rs73537803	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	11754871	11754872	chr8:11754872:T:C	rs13273672	T	C	C	Sox1.mouse_HMG_3	8	1	-	5.741669671347038	-1.1670851079681817	TCAATTCCATTTT
chr8	12005806	12005807	chr8:12005807:A:T	rs193164781	A	T	.	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	12433905	12433906	chr8:12433906:C:A	rs80169473	C	A	.	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	12466378	12466379	chr8:12466379:A:G	rs2980510	A	G	.	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr8	12756953	12756954	chr8:12756954:C:T	rs78815005	C	T	T	Sox1.mouse_HMG_3	3	1	+	6.615179465870623	1.9783168331500431	TCACTCACATTGC
chr8	12771868	12771869	chr8:12771869:C:T	rs35649296	C	T	C	Sox1.mouse_HMG_3	7	1	+	12.112894253843926	8.480426762748733	TCAATTTCATTGT
chr8	12810294	12810295	chr8:12810295:G:C	rs11773992	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.627974418365065	-1.2747783689942804	ACAATAGCATTTA
chr8	12976852	12976853	chr8:12976853:C:G	rs2466254	C	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr8	12976855	12976856	chr8:12976856:A:G	rs75021555	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	12976899	12976900	chr8:12976900:T:C	rs12541930	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr8	13220881	13220882	chr8:13220882:C:A	rs1188299	C	A	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr8	13264828	13264829	chr8:13264829:A:G	rs1188279	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr8	13440298	13440299	chr8:13440299:C:T	rs13272331	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr8	13535454	13535455	chr8:13535455:G:A	rs10087859	G	A	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	13571628	13571629	chr8:13571629:C:T	rs11775957	C	T	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr8	13581160	13581161	chr8:13581161:C:A	rs13254681	C	A	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	13581233	13581234	chr8:13581234:A:T	rs13256026	A	T	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr8	13588022	13588023	chr8:13588023:T:C	rs80321840	T	C	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr8	13603708	13603709	chr8:13603709:G:A	rs17094719	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr8	13640501	13640502	chr8:13640502:C:T	rs7014659	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	13640533	13640534	chr8:13640534:G:A	rs28565094	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr8	13662595	13662596	chr8:13662596:A:G	rs17116999	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	13723597	13723598	chr8:13723598:G:A	rs11203518	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	13923294	13923295	chr8:13923295:A:G	rs7819836	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.243619010212052	-1.5574081517049536	TCAATACTAATGA
chr8	14034100	14034101	chr8:14034101:C:T	rs12549458	C	T	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	14054179	14054180	chr8:14054180:C:A	rs17118485	C	A	c	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	14059573	14059574	chr8:14059574:G:A	rs3915658	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	14067999	14068000	chr8:14068000:A:G	rs73213855	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.414171714129388	-2.3868554477876183	TCAATGAGATTGG
chr8	14229774	14229775	chr8:14229775:G:T	rs9657231	G	T	G	Sox1.mouse_HMG_3	7	1	-	4.470712274696265	-0.819788910651766	GCAATTACAGTGA
chr8	14479402	14479403	chr8:14479403:T:C	rs76886386	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	14697838	14697839	chr8:14697839:A:T	rs17321361	A	T	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	15027039	15027040	chr8:15027040:C:T	rs4631467	C	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr8	15128157	15128158	chr8:15128158:G:A	rs10503533	G	A	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr8	15212629	15212630	chr8:15212630:C:A	rs62502013	C	A	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr8	15325401	15325402	chr8:15325402:C:T	rs75263565	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.673903171135173	2.0414356800399793	TCACTGGCAGTGC
chr8	15325415	15325416	chr8:15325416:G:A	rs10093109	G	A	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	15505348	15505349	chr8:15505349:A:G	rs76934792	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.181285168626976	-1.7056243391735304	ACAATGCCATTAT
chr8	15505356	15505357	chr8:15505357:G:C	rs565616058	G	C	G	Sox1.mouse_HMG_3	1	1	-	5.181285168626976	-1.721467618732368	ACAATGCCATTAT
chr8	15582559	15582560	chr8:15582560:G:A	rs1429085	G	A	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	15586693	15586694	chr8:15586694:T:C	rs17657878	T	C	T	Sox1.mouse_HMG_3	8	1	-	10.771204720209502	3.8624499408942827	TCAATAGCATTCA
chr8	16149885	16149886	chr8:16149886:A:C	rs351554	A	C	C	Sox1.mouse_HMG_3	4	1	-	6.7634753149873585	-0.13662070662729042	TCACTAACAATGA
chr8	16213352	16213353	chr8:16213353:A:C	rs55810429	A	C	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	16518252	16518253	chr8:16518253:G:A	rs73191892	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	16518285	16518286	chr8:16518286:C:T	rs116572335	C	T	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr8	16714926	16714927	chr8:16714927:C:A	rs77259056	C	A	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	16714935	16714936	chr8:16714936:A:T	rs80276544	A	T	A	Sox1.mouse_HMG_3	2	1	+	5.315855285427972	-1.5928994938872474	TCACATGCATTGC
chr8	16779977	16779978	chr8:16779978:T:G	rs144371966	T	G	T	Sox1.mouse_HMG_3	6	1	-	8.632742366450248	8.58118902357371	ACAATTATATTGA
chr8	16779991	16779992	chr8:16779992:G:C	rs117062586	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr8	16794827	16794828	chr8:16794828:A:G	rs686055	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	16997293	16997294	chr8:16997294:C:T	rs10106536	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr8	17378090	17378091	chr8:17378091:A:G	rs34826184	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.814802652441058	-1.093952126874162	ATACTACCATTGA
chr8	17406315	17406316	chr8:17406316:A:G	rs78739229	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	17446831	17446832	chr8:17446832:G:C	rs11203860	G	C	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	17495394	17495395	chr8:17495395:A:G	rs74720879	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	17561709	17561710	chr8:17561710:G:A	rs77336202	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr8	17593317	17593318	chr8:17593318:A:G	rs56041459	A	G	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	17608250	17608251	chr8:17608251:C:A	rs2517197	C	A	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	17685909	17685910	chr8:17685910:T:C	rs6586630	T	C	T	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr8	17693260	17693261	chr8:17693261:T:C	rs186022	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.517616030106131	-1.3911387492090905	TCACTGACATGGA
chr8	17693277	17693278	chr8:17693278:C:A	rs4921805	C	A	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	17820903	17820904	chr8:17820904:G:A	rs10090976	G	A	A	Sox1.mouse_HMG_3	9	1	-	7.639425788114567	14.526335295915072	TCAATTTCACTGA
chr8	17831973	17831974	chr8:17831974:C:A	rs75293870	C	A	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	17864666	17864667	chr8:17864667:C:T	rs1386912833	C	T	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	18172798	18172799	chr8:18172799:C:A	rs2040474	C	A	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	18391248	18391249	chr8:18391249:A:G	rs45553933	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	18552142	18552143	chr8:18552143:A:G	rs17643516	A	G	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	18582103	18582104	chr8:18582104:G:A	rs17596349	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	18741309	18741310	chr8:18741310:C:T	rs10097758	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	18768774	18768775	chr8:18768775:T:C	rs13264337	T	C	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr8	18803454	18803455	chr8:18803455:A:C	rs76728814	A	C	A	Sox1.mouse_HMG_3	2	1	+	5.837282027955107	-1.0714727513601114	TCAAAACAATTGA
chr8	18807629	18807630	chr8:18807630:C:T	rs7837572	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	18835808	18835809	chr8:18835809:A:G	rs11781831	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.525454876006652	-2.3614546317938565	TCAGTTGCATTGG
chr8	19064879	19064880	chr8:19064880:C:T	rs2410600	C	T	T	Sox1.mouse_HMG_3	6	1	+	5.503535308644347	4.990457493533876	TTACTTCCATTGT
chr8	19086837	19086838	chr8:19086838:G:C	rs17127803	G	C	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	19141743	19141744	chr8:19141744:C:A	rs11778029	C	A	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr8	19141765	19141766	chr8:19141766:C:A	rs333031	C	A	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	19250989	19250990	chr8:19250990:C:T	rs2683310	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	19269525	19269526	chr8:19269526:G:A	rs2943427	G	A	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	19278657	19278658	chr8:19278658:T:A	chr8:19278658:T:A	T	A	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	19584296	19584297	chr8:19584297:C:T	rs115989737	C	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr8	19742454	19742455	chr8:19742455:A:G	rs73202595	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr8	19848660	19848661	chr8:19848661:A:T	rs4520184	A	T	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	19880748	19880749	chr8:19880749:G:A	rs6586876	G	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	20098834	20098835	chr8:20098835:C:A	rs28742908	C	A	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr8	20227097	20227098	chr8:20227098:A:G	rs138193053	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr8	20524022	20524023	chr8:20524023:T:G	rs17492141	T	G	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr8	20585356	20585357	chr8:20585357:C:A	rs4922218	C	A	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr8	20693161	20693162	chr8:20693162:G:C	rs73224072	G	C	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr8	20885251	20885252	chr8:20885252:T:C	rs10099980	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	20913405	20913406	chr8:20913406:A:G	rs4961409	A	G	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	20913430	20913431	chr8:20913431:C:A	rs75135715	C	A	C	Sox1.mouse_HMG_3	6	1	+	4.842689855387121	4.894243198263659	TCAATTCCTTTGG
chr8	21421689	21421690	chr8:21421690:G:A	rs4424243	G	A	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr8	21948501	21948502	chr8:21948502:T:A	rs182544764	T	A	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr8	21969879	21969880	chr8:21969880:G:A	rs17060681	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	22004151	22004152	chr8:22004152:G:C	rs10866837	G	C	C	Sox1.mouse_HMG_3	7	1	-	5.206477831113791	-1.6732585593508202	TCTATTGCATTGC
chr8	22109837	22109838	chr8:22109838:G:A	rs7831322	G	A	g	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr8	22170631	22170632	chr8:22170632:G:C	rs182907611	G	C	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr8	22349856	22349857	chr8:22349857:T:C	rs79021774	T	C	C	Sox1.mouse_HMG_3	3	1	-	7.838067700331598	1.0370405384145909	TCAATGGCAGTGC
chr8	22537995	22537996	chr8:22537996:G:A	rs1482337	G	A	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	22797755	22797756	chr8:22797756:C:T	rs4872027	C	T	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	22865215	22865216	chr8:22865216:T:G	rs144437734	T	G	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr8	23106268	23106269	chr8:23106269:T:C	rs4620285	T	C	T	Sox1.mouse_HMG_3	10	1	+	4.190858796778258	-0.44435399902635564	TCACTACCCTTGC
chr8	23326023	23326024	chr8:23326024:C:T	rs117617548	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	23326030	23326031	chr8:23326031:C:T	rs10098265	C	T	C	Sox1.mouse_HMG_3	3	1	+	4.718650194111307	0.08178756139072463	TCACAGTCATTGC
chr8	23352922	23352923	chr8:23352923:G:A	rs4872109	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	23366399	23366400	chr8:23366400:A:G	rs17089165	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.7143544926322125	0.9133273307152063	TCAATTGCATGGA
chr8	23366500	23366501	chr8:23366501:A:G	rs7818494	A	G	A	Sox1.mouse_HMG_3	9	1	+	7.639425788114567	10.758260258802538	TCAATTTCAATGA
chr8	23497945	23497946	chr8:23497946:G:A	rs7813840	G	A	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	23570781	23570782	chr8:23570782:C:G	rs557722870	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	23897311	23897312	chr8:23897312:C:T	rs847324	C	T	T	Sox1.mouse_HMG_3	1	1	+	5.140207884296718	0.18193565318309113	TCAATTTCACTGC
chr8	23925155	23925156	chr8:23925156:G:A	rs1705701	G	A	a	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	24296426	24296427	chr8:24296427:A:T	rs11995783	A	T	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr8	24296432	24296433	chr8:24296433:C:T	rs62502708	C	T	c	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr8	24387784	24387785	chr8:24387785:T:C	rs79046129	T	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr8	24706899	24706900	chr8:24706900:G:A	rs17052420	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr8	25378076	25378077	chr8:25378077:G:A	rs2709624	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	25378081	25378082	chr8:25378082:C:G	rs111902374	C	G	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	25393108	25393109	chr8:25393109:T:C	rs147924957	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	25455702	25455703	chr8:25455703:G:A	rs11987149	G	A	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	25455743	25455744	chr8:25455744:T:C	rs11984651	T	C	c	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	25455744	25455745	chr8:25455745:G:A	rs11987153	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	25576564	25576565	chr8:25576565:A:G	rs9314305	A	G	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	25690566	25690567	chr8:25690567:A:G	rs17054185	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.674156153821789	0.8731289919047838	GCAATTTCATTGA
chr8	26066903	26066904	chr8:26066904:C:T	rs6993963	C	T	T	Sox1.mouse_HMG_3	9	1	-	5.137719535556537	2.018885064868562	TCCATAACAGTGA
chr8	26078047	26078048	chr8:26078048:C:G	rs13439370	C	G	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr8	26110929	26110930	chr8:26110930:A:G	rs2976331	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	26202156	26202157	chr8:26202157:C:T	rs12674998	C	T	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr8	26213594	26213595	chr8:26213595:G:A	rs4521767	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr8	26219343	26219344	chr8:26219344:G:A	rs13256270	G	A	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr8	26294533	26294534	chr8:26294534:G:A	rs2046226	G	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr8	26422348	26422349	chr8:26422349:C:T	rs17055205	C	T	C	Sox1.mouse_HMG_3	1	1	+	9.9634945459211	5.005222314807474	TCAATGCCATTCA
chr8	26445900	26445901	chr8:26445901:T:C	rs7823542	T	C	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr8	26483736	26483737	chr8:26483737:T:C	rs10101608	T	C	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	26603546	26603547	chr8:26603547:A:G	rs7818193	A	G	A	Sox1.mouse_HMG_3	2	1	+	4.890892437273827	-2.0178623420413935	TCAGTGGCATTGT
chr8	26639132	26639133	chr8:26639133:G:T	rs73227622	G	T	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	26643113	26643114	chr8:26643114:A:G	rs10093591	A	G	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	26781392	26781393	chr8:26781393:T:G	rs11135955	T	G	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	26899870	26899871	chr8:26899871:G:T	rs73569910	G	T	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr8	27386782	27386783	chr8:27386783:A:G	rs11776858	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.88858557487535	1.2533727790707352	ACAAAACCATTGT
chr8	27400568	27400569	chr8:27400569:G:A	rs2115805	G	A	A	Sox1.mouse_HMG_3	7	1	-	8.182211674586862	4.5497441834916685	TCAATTACGTTGA
chr8	27454185	27454186	chr8:27454186:T:C	rs1879184	T	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	27545259	27545260	chr8:27545260:G:A	rs7341557	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr8	27562219	27562220	chr8:27562220:C:A	rs113928326	C	A	C	Sox1.mouse_HMG_3	12	1	+	6.050548307883615	8.549766211701463	TCACTCTCATTGC
chr8	27625976	27625977	chr8:27625977:C:T	rs10096040	C	T	c	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	27751216	27751217	chr8:27751217:A:C	rs1460225	A	C	t	Sox1.mouse_HMG_3	9	1	-	3.4672758986960512	-0.3007991384164823	TCCCTTCCATTGC
chr8	27751237	27751238	chr8:27751238:G:A	rs1073235	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr8	27896585	27896586	chr8:27896586:T:C	rs2685373	T	C	t	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	27896597	27896598	chr8:27896598:G:A	rs113718537	G	A	G	Sox1.mouse_HMG_3	6	1	-	5.230432496397912	4.717354681287441	TCAACACTATTGA
chr8	27939856	27939857	chr8:27939857:T:C	rs2726955	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	27974648	27974649	chr8:27974649:A:G	rs2727006	A	G	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	28001903	28001904	chr8:28001904:C:T	rs56858294	C	T	T	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	28008804	28008805	chr8:28008805:T:C	rs7831209	T	C	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr8	28078730	28078731	chr8:28078731:A:G	rs4732815	A	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	28250602	28250603	chr8:28250603:T:C	rs73566685	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	28611499	28611500	chr8:28611500:A:C	rs4732643	A	C	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	29192904	29192905	chr8:29192905:A:G	rs7815864	A	G	G	Sox1.mouse_HMG_3	10	1	-	4.437339657674865	-0.19787313812974827	TCAGTTTCATTGG
chr8	29402846	29402847	chr8:29402847:T:A	rs66476671	T	A	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	29551641	29551642	chr8:29551642:A:G	rs13273498	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	29555331	29555332	chr8:29555332:T:C	rs6998142	T	C	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	29575734	29575735	chr8:29575735:C:T	rs56346320	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	29619273	29619274	chr8:29619274:A:C	rs1319605992	A	C	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	29655777	29655778	chr8:29655778:G:A	rs533977932	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	29671315	29671316	chr8:29671316:C:T	rs76943696	C	T	C	Sox1.mouse_HMG_3	5	1	-	4.853367197201214	6.086039968268302	AAAATGACATTGA
chr8	29671340	29671341	chr8:29671341:T:C	rs28393030	T	C	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr8	29782146	29782147	chr8:29782147:T:C	rs7816009	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	29829404	29829405	chr8:29829405:G:A	rs13255271	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr8	30317447	30317448	chr8:30317448:C:T	rs11996929	C	T	T	Sox1.mouse_HMG_3	7	1	+	6.721499814697266	3.089032323602073	ACAATAACAGTGC
chr8	30476994	30476995	chr8:30476995:T:C	rs16877073	T	C	t	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	30549447	30549448	chr8:30549448:A:G	rs974337804	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	30551163	30551164	chr8:30551164:T:C	rs4489288	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	30814288	30814289	chr8:30814289:T:C	rs6996100	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.303986979040932	-0.6047678002742882	ACACTGACATTGG
chr8	31023433	31023434	chr8:31023434:T:C	rs149237068	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	31058110	31058111	chr8:31058111:G:A	rs7016874	G	A	G	Sox1.mouse_HMG_3	1	1	-	6.19884415700035	1.2405719258867232	TCACTATCAATGA
chr8	31075098	31075099	chr8:31075099:C:G	rs2725383	C	G	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	31075108	31075109	chr8:31075109:G:C	rs2737320	G	C	G	Sox1.mouse_HMG_3	3	1	-	8.598083671731706	3.9612210390111247	TCACTGCCAGTGA
chr8	31100248	31100249	chr8:31100249:A:G	rs2737327	A	G	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr8	31489652	31489653	chr8:31489653:C:T	rs78573140	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr8	32310005	32310006	chr8:32310006:A:G	rs73248780	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr8	32334750	32334751	chr8:32334751:G:C	rs73248796	G	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	32571416	32571417	chr8:32571417:C:T	rs4733361	C	T	C	Sox1.mouse_HMG_3	10	1	+	7.481669400164902	12.116882195969517	TCAATGCCATCGT
chr8	32575277	32575278	chr8:32575278:G:T	rs2466076	G	T	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	32918675	32918676	chr8:32918676:C:T	rs79375804	C	T	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr8	33389019	33389020	chr8:33389020:A:G	rs16880849	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.344024922637631	-1.5647298566775887	TCAAATGCATCGA
chr8	33389043	33389044	chr8:33389044:G:A	rs16880851	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	33412154	33412155	chr8:33412155:G:A	rs10113715	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	33915660	33915661	chr8:33915661:T:C	rs10453046	T	C	C	Sox1.mouse_HMG_3	10	1	+	5.179905889740008	0.544693093935394	TAAATGACATTGC
chr8	33922229	33922230	chr8:33922230:C:G	rs716584	C	G	G	Sox1.mouse_HMG_3	7	1	+	7.411261519067143	0.5315251286025313	TCAAAAACAGTGA
chr8	34666590	34666591	chr8:34666591:G:A	rs7004498	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr8	34666960	34666961	chr8:34666961:T:C	rs4455823	T	C	C	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	34666994	34666995	chr8:34666995:C:T	rs16882722	C	T	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	35594677	35594678	chr8:35594678:G:A	rs2958249	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	37035734	37035735	chr8:37035735:T:G	rs2032072	T	G	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	37117862	37117863	chr8:37117863:A:G	rs12543240	A	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	37148123	37148124	chr8:37148124:G:A	rs73594798	G	A	G	Sox1.mouse_HMG_3	9	1	-	4.351457311791364	11.23836681959187	TCAATTTCACTGG
chr8	37174539	37174540	chr8:37174540:C:T	rs59607280	C	T	T	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr8	37312594	37312595	chr8:37312595:G:A	rs405459	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.9495676441256276	2.317100153030435	TCAATATCACTGT
chr8	37491086	37491087	chr8:37491087:G:A	rs73675815	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	37619236	37619237	chr8:37619237:G:C	rs6415419	G	C	C	Sox1.mouse_HMG_3	1	1	-	4.190858796778258	-2.7118939905810855	TCTCTACCATTGC
chr8	37741591	37741592	chr8:37741592:C:G	rs79706020	C	G	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr8	37891958	37891959	chr8:37891959:A:G	rs55946986	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr8	37963967	37963968	chr8:37963968:C:G	rs4998	C	G	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr8	38184651	38184652	chr8:38184652:C:T	chr8:38184652:C:T	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	38558679	38558680	chr8:38558680:T:G	rs34615944	T	G	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr8	38705938	38705939	chr8:38705939:T:C	rs28567377	T	C	T	Sox1.mouse_HMG_3	5	1	+	6.0819711197558615	2.269566564738676	ACAATTCTATTGC
chr8	38718078	38718079	chr8:38718079:T:A	rs72634781	T	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	38876609	38876610	chr8:38876610:T:G	rs16887854	T	G	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr8	38915708	38915709	chr8:38915709:C:A	rs62504363	C	A	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr8	38939773	38939774	chr8:38939774:T:C	rs9298645	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	38976667	38976668	chr8:38976668:G:T	rs138567982	G	T	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	39329793	39329794	chr8:39329794:T:C	rs79004878	T	C	.	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr8	39615530	39615531	chr8:39615531:A:G	rs13263586	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	39943424	39943425	chr8:39943425:C:A	rs6474194	C	A	A	Sox1.mouse_HMG_3	7	1	+	4.753059556507208	-0.5374416288408241	TCAATACCATAAA
chr8	39964647	39964648	chr8:39964648:G:A	rs2729463	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	40013875	40013876	chr8:40013876:A:G	rs4321987	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	40039468	40039469	chr8:40039469:C:T	rs964315384	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	40156291	40156292	chr8:40156292:G:T	rs10958604	G	T	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr8	40211733	40211734	chr8:40211734:A:G	rs2980801	A	G	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	40324093	40324094	chr8:40324094:G:A	rs2072691	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	40373493	40373494	chr8:40373494:C:T	rs76022435	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	40391074	40391075	chr8:40391075:C:T	rs210854	C	T	C	Sox1.mouse_HMG_3	1	1	+	5.206477831113791	0.248205600000164	TCGATTGCATTGC
chr8	40487018	40487019	chr8:40487019:T:C	rs10504026	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	40487033	40487034	chr8:40487034:G:A	rs74432720	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr8	40514943	40514944	chr8:40514944:A:C	rs1429956	A	C	A	Sox1.mouse_HMG_3	2	1	+	5.841227650246687	-1.067527129068532	TCACTTGCATTAC
chr8	40519388	40519389	chr8:40519389:A:G	rs2565097	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr8	40636367	40636368	chr8:40636368:T:C	rs2599649	T	C	C	Sox1.mouse_HMG_3	10	1	+	5.508957272405556	0.873744476600943	TCTCTGACATTGA
chr8	40718659	40718660	chr8:40718660:T:C	rs7822571	T	C	c	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr8	41261977	41261978	chr8:41261978:T:C	rs4736958	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	41301297	41301298	chr8:41301298:T:C	rs114769308	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.2041394745287075	-1.6959565470859406	TCAATTTCTTTGT
chr8	41305382	41305383	chr8:41305383:G:A	rs11781874	G	A	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	41474370	41474371	chr8:41474371:G:A	rs149293440	G	A	G	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	41490243	41490244	chr8:41490244:A:C	rs958639840	A	C	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr8	41583678	41583679	chr8:41583679:T:A	rs141247285	T	A	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	41583724	41583725	chr8:41583725:G:A	rs112951504	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	42155820	42155821	chr8:42155821:T:C	rs59253046	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	42180222	42180223	chr8:42180223:G:A	rs185787026	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	42196349	42196350	chr8:42196350:T:A	rs1052460553	T	A	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	42198530	42198531	chr8:42198531:C:G	rs2299609	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr8	42709088	42709089	chr8:42709089:C:T	rs78428120	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	46032082	46032083	chr8:46032083:C:T	rs137871006	C	T	.	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr8	46265678	46265679	chr8:46265679:G:A	rs566858923	G	A	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	47477034	47477035	chr8:47477035:G:T	chr8:47477035:G:T	G	T	G	Sox1.mouse_HMG_3	1	1	-	4.813669191757924	-2.0890835956014215	ACAATTTCACTGA
chr8	47540232	47540233	chr8:47540233:G:A	rs62539108	G	A	G	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr8	48071689	48071690	chr8:48071690:A:C	rs4873777	A	C	A	Sox1.mouse_HMG_3	4	1	-	5.939651554486579	-0.9604444671280685	ACACTTCCATTAA
chr8	48119270	48119271	chr8:48119271:T:C	rs4873779	T	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	48156934	48156935	chr8:48156935:T:C	rs72633944	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr8	48643796	48643797	chr8:48643797:T:C	rs144891863	T	C	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	49062761	49062762	chr8:49062762:A:T	rs1511365	A	T	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	49235640	49235641	chr8:49235641:A:G	rs13260469	A	G	A	Sox1.mouse_HMG_3	9	1	-	8.349822172382634	1.4629126645821262	TCAACATCATTGA
chr8	49340402	49340403	chr8:49340403:C:T	rs1519835	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	49703626	49703627	chr8:49703627:A:C	rs2029897	A	C	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	49703630	49703631	chr8:49703631:G:C	rs2029896	G	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	50898363	50898364	chr8:50898364:G:A	rs7018008	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	51277035	51277036	chr8:51277036:G:A	rs6991317	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	51395455	51395456	chr8:51395456:A:G	rs7012913	A	G	G	Sox1.mouse_HMG_3	4	1	-	5.541531205735215	-1.3585648158794341	TCTCTTGCATTGA
chr8	51935595	51935596	chr8:51935596:A:C	rs16916974	A	C	A	Sox1.mouse_HMG_3	9	1	-	6.612507864060111	2.8444328269475787	TCAAAAACATTCA
chr8	52022018	52022019	chr8:52022019:G:A	rs268933	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr8	52108493	52108494	chr8:52108494:T:C	rs28582357	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	52136430	52136431	chr8:52136431:T:C	rs16917278	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	52267011	52267012	chr8:52267012:A:G	rs57646775	A	G	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	52391463	52391464	chr8:52391464:C:T	rs35361856	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	52833964	52833965	chr8:52833965:G:A	rs17254973	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	52855550	52855551	chr8:52855551:G:A	rs7844657	G	A	G	Sox1.mouse_HMG_3	11	1	+	8.188213666542739	4.07837323555684	TGAATTACATTGA
chr8	53104671	53104672	chr8:53104672:C:G	rs4532612	C	G	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	53147046	53147047	chr8:53147047:G:A	rs989909308	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	53154672	53154673	chr8:53154673:T:C	chr8:53154673:T:C	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	53218731	53218732	chr8:53218732:T:C	rs919042	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	53218775	53218776	chr8:53218776:A:T	rs118081261	A	T	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	53268564	53268565	chr8:53268565:A:G	rs2098884	A	G	G	Sox1.mouse_HMG_3	8	1	+	5.47786836911129	-1.430886410203931	TCACTTTCATTTA
chr8	53297325	53297326	chr8:53297326:T:C	rs7823007	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	53582199	53582200	chr8:53582200:C:A	rs77394560	C	A	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	53906736	53906737	chr8:53906737:T:C	rs60106847	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr8	54307473	54307474	chr8:54307474:A:G	rs111928083	A	G	A	Sox1.mouse_HMG_3	9	1	-	9.013522190067285	2.126612682266776	TCATTAACATTGA
chr8	54382306	54382307	chr8:54382307:T:A	rs6986393	T	A	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr8	54481708	54481709	chr8:54481709:T:G	rs1079005	T	G	G	Sox1.mouse_HMG_3	10	1	+	5.304901735353681	-1.5951942862609658	ACCATTCCATTGA
chr8	54863167	54863168	chr8:54863168:T:G	rs536217613	T	G	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	55219196	55219197	chr8:55219197:T:C	rs75752766	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	55228638	55228639	chr8:55228639:A:G	rs13249517	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	55347331	55347332	chr8:55347332:G:C	rs988297	G	C	G	Sox1.mouse_HMG_3	1	1	-	4.3712420522983635	-2.5315107350609805	TCAAGTCCAGTGA
chr8	55415904	55415905	chr8:55415905:G:A	rs7011423	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	55415935	55415936	chr8:55415936:G:A	rs7011439	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	55537540	55537541	chr8:55537541:G:T	rs4598235	G	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	56073971	56073972	chr8:56073972:C:G	rs2976045	C	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	56079416	56079417	chr8:56079417:G:C	rs2976043	G	C	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	56226116	56226117	chr8:56226117:T:G	rs36112366	T	G	T	Sox1.mouse_HMG_3	5	1	+	5.988339074028612	5.479249201043732	TCACTTCCACTGA
chr8	56270530	56270531	chr8:56270531:A:G	rs12056556	A	G	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	56446953	56446954	chr8:56446954:G:A	rs114321882	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	56607599	56607600	chr8:56607600:G:A	rs118166257	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	56682395	56682396	chr8:56682396:G:A	rs75523753	G	A	A	Sox1.mouse_HMG_3	3	1	-	5.24402255893002	0.6071599262094409	TCACTGTCATTAC
chr8	57052717	57052718	chr8:57052718:C:G	rs1442122	C	G	.	Sox1.mouse_HMG_3	7	1	+	4.750402790762509	-2.129333599702102	TGAATACCATTAA
chr8	57061839	57061840	chr8:57061840:G:A	rs60074804	G	A	.	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	57424876	57424877	chr8:57424877:G:A	rs115898843	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	57513947	57513948	chr8:57513948:C:G	rs114555710	C	G	C	Sox1.mouse_HMG_3	12	1	+	7.917276961111325	7.128526388605971	TCAATTTCATTAC
chr8	57745583	57745584	chr8:57745584:T:A	rs75375584	T	A	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	57820365	57820366	chr8:57820366:A:G	rs4738630	A	G	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr8	57995629	57995630	chr8:57995630:G:A	rs140568565	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	58035770	58035771	chr8:58035771:T:C	rs11997733	T	C	T	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr8	58136780	58136781	chr8:58136781:G:A	rs4279582	G	A	A	Sox1.mouse_HMG_3	11	1	+	5.2041394745287075	1.0942990435428097	TCTATTTCATTGT
chr8	58196129	58196130	chr8:58196130:A:C	chr8:58196130:A:C	A	C	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr8	58282357	58282358	chr8:58282358:C:T	rs7007933	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr8	58310035	58310036	chr8:58310036:G:A	rs10109576	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	58310063	58310064	chr8:58310064:C:A	rs10109389	C	A	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr8	58324233	58324234	chr8:58324234:T:G	rs7818992	T	G	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	58366341	58366342	chr8:58366342:T:C	rs6471710	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.8881032460207	1.2528904502160862	TTAATTGCAGTGA
chr8	58543310	58543311	chr8:58543311:G:T	rs76362468	G	T	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr8	58801065	58801066	chr8:58801066:T:G	rs28622145	T	G	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr8	58880240	58880241	chr8:58880241:A:G	rs2726557	A	G	G	Sox1.mouse_HMG_3	0	1	+	8.780386141087487	4.753963595350847	ACAATGGCATTGC
chr8	59148060	59148061	chr8:59148061:A:G	rs16924675	A	G	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr8	59759466	59759467	chr8:59759467:C:T	rs7821280	C	T	T	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr8	60412460	60412461	chr8:60412461:T:C	rs113899565	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.497481426983843	0.8622686311792283	TTAAATACATTGA
chr8	60777976	60777977	chr8:60777977:A:G	rs979995729	A	G	A	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	60852348	60852349	chr8:60852349:C:G	rs118161607	C	G	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr8	60911911	60911912	chr8:60911912:G:A	rs558329919	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	60961938	60961939	chr8:60961939:T:C	rs10086776	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	61238581	61238582	chr8:61238582:C:T	rs76131178	C	T	C	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	61825907	61825908	chr8:61825908:T:C	rs993792	T	C	T	Sox1.mouse_HMG_3	5	1	-	5.539859200033279	4.30718642896619	ACAATATCATTTA
chr8	61843066	61843067	chr8:61843067:C:A	rs775132000	C	A	C	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr8	62039124	62039125	chr8:62039125:C:A	rs11998202	C	A	C	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr8	62286681	62286682	chr8:62286682:T:C	rs55737753	T	C	t	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	62350988	62350989	chr8:62350989:C:T	rs13282612	C	T	c	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	62472645	62472646	chr8:62472646:G:T	rs34558126	G	T	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr8	62488008	62488009	chr8:62488009:C:T	rs10091239	C	T	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	62598436	62598437	chr8:62598437:T:A	rs7844749	T	A	A	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr8	62699366	62699367	chr8:62699367:G:T	rs4738995	G	T	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	63019374	63019375	chr8:63019375:A:C	rs4581048	A	C	C	Sox1.mouse_HMG_3	0	1	+	5.8028087131286465	1.7763861673920043	ACAAAACCATTGC
chr8	63389568	63389569	chr8:63389569:T:C	rs6981563	T	C	T	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr8	63469553	63469554	chr8:63469554:G:C	rs1367807	G	C	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	63570075	63570076	chr8:63570076:C:A	rs993513	C	A	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr8	63749759	63749760	chr8:63749760:G:A	rs28549862	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	64168561	64168562	chr8:64168562:A:G	rs2356341	A	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr8	64283320	64283321	chr8:64283321:C:T	rs77673968	C	T	C	Sox1.mouse_HMG_3	12	1	-	7.891368079856472	11.179336556179674	TCAAAAACATTGG
chr8	64364887	64364888	chr8:64364888:T:G	rs114322169	T	G	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	64806774	64806775	chr8:64806775:C:A	rs138850919	C	A	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr8	64838268	64838269	chr8:64838269:T:C	rs4629907	T	C	C	Sox1.mouse_HMG_3	12	1	+	6.278671549603093	6.192894687856391	TTACTAACATTGT
chr8	64955802	64955803	chr8:64955803:G:A	rs12156257	G	A	c	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	65183259	65183260	chr8:65183260:G:T	rs7000812	G	T	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr8	65189952	65189953	chr8:65189953:G:A	rs72658989	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	65643971	65643972	chr8:65643972:G:A	rs118185709	G	A	G	Sox1.mouse_HMG_3	12	1	+	4.439572530123151	7.727541006446353	TCAATTGCAATGG
chr8	65990939	65990940	chr8:65990940:T:C	rs16932391	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.504864967206769	-0.4038898121084511	TCAAAATCATTAA
chr8	65990955	65990956	chr8:65990956:T:C	rs78535683	T	C	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr8	66113970	66113971	chr8:66113971:G:A	rs149784744	G	A	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	66113971	66113972	chr8:66113972:G:A	rs144653944	G	A	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr8	66114821	66114822	chr8:66114822:G:A	rs78408882	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	66459598	66459599	chr8:66459599:T:A	rs890515	T	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	66463765	66463766	chr8:66463766:G:C	rs78348791	G	C	G	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr8	66533548	66533549	chr8:66533549:C:T	chr8:66533549:C:T	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr8	67377419	67377420	chr8:67377420:G:A	rs80189252	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	67580197	67580198	chr8:67580198:T:C	rs900119	T	C	C	Sox1.mouse_HMG_3	11	1	-	5.052477077741333	9.16231750872723	TCACTTGCATTAG
chr8	67792218	67792219	chr8:67792219:C:T	rs76518199	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	67792225	67792226	chr8:67792226:T:G	chr8:67792226:T:G	T	G	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	68135555	68135556	chr8:68135556:G:A	rs62522678	G	A	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr8	68331509	68331510	chr8:68331510:C:T	rs2676639	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr8	68597961	68597962	chr8:68597962:A:T	rs7819024	A	T	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr8	68612177	68612178	chr8:68612178:C:T	rs16934777	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	69095369	69095370	chr8:69095370:A:G	rs2912523	A	G	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	69117436	69117437	chr8:69117437:G:T	rs1426598	G	T	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	69148104	69148105	chr8:69148105:A:G	rs527950984	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.362457070186094	-1.5244524376144137	AAAATTACATTGA
chr8	69150648	69150649	chr8:69150649:C:T	rs549643	C	T	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	69464291	69464292	chr8:69464292:G:C	rs2704027	G	C	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr8	69569182	69569183	chr8:69569183:G:A	rs73293332	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	69597247	69597248	chr8:69597248:C:T	rs150410715	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	69644116	69644117	chr8:69644117:G:A	rs112755651	G	A	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	69644119	69644120	chr8:69644120:G:C	rs16919163	G	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr8	69644128	69644129	chr8:69644129:T:C	rs16919165	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	69654766	69654767	chr8:69654767:G:T	rs59388909	G	T	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	69705926	69705927	chr8:69705927:T:C	rs918004551	T	C	T	Sox1.mouse_HMG_3	4	1	+	8.059143376834834	1.1590473552201872	TCAATTCCATTCT
chr8	70099721	70099722	chr8:70099722:T:C	rs3892266	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	70113949	70113950	chr8:70113950:A:G	rs73285363	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	70273509	70273510	chr8:70273510:A:G	rs2290878	A	G	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	70465794	70465795	chr8:70465795:T:G	rs10111857	T	G	G	Sox1.mouse_HMG_3	0	1	+	9.405793846020108	2.553614703926825	TCACTAGCAGTGA
chr8	70666282	70666283	chr8:70666283:A:C	rs11987501	A	C	a	Sox1.mouse_HMG_3	2	1	+	8.448891032080276	1.5401362527650557	TCATTATCATTGA
chr8	71131152	71131153	chr8:71131153:G:A	rs888857400	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	71176012	71176013	chr8:71176013:G:C	rs72652101	G	C	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	71279049	71279050	chr8:71279050:C:T	rs16937550	C	T	C	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr8	71482462	71482463	chr8:71482463:A:G	rs56730538	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.37846587727025	-2.5302889020449704	TCAACCACATTGA
chr8	71604206	71604207	chr8:71604207:T:C	rs77331111	T	C	T	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr8	71619314	71619315	chr8:71619315:T:G	rs1559574	T	G	G	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr8	71696939	71696940	chr8:71696940:C:T	rs34554315	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.406998596793493	0.2971581658075939	TCAATGACAATGG
chr8	72010842	72010843	chr8:72010843:C:G	rs10087514	C	G	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr8	72651790	72651791	chr8:72651791:A:G	rs1440341	A	G	G	Sox1.mouse_HMG_3	12	1	+	12.988792755627646	9.700824279304443	ACAATAACATTGA
chr8	72683262	72683263	chr8:72683263:T:A	rs1440359	T	A	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	72810566	72810567	chr8:72810567:G:A	rs10957619	G	A	g	Sox1.mouse_HMG_3	9	1	+	6.18464262966056	3.0658081589725854	TCACTGCCAGTGT
chr8	73090834	73090835	chr8:73090835:C:G	rs72655857	C	G	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	73163229	73163230	chr8:73163230:G:A	rs7817340	G	A	G	Sox1.mouse_HMG_3	11	1	-	4.595488816607668	2.2780151111198728	TCACTTGCATTCG
chr8	73163231	73163232	chr8:73163232:A:G	rs7816987	A	G	G	Sox1.mouse_HMG_3	9	1	-	4.595488816607668	-2.291420691192839	TCACTTGCATTCG
chr8	73181438	73181439	chr8:73181439:T:C	rs71525199	T	C	c	Sox1.mouse_HMG_3	6	1	-	5.283281352098314	4.806765412443092	TCACAGACATTGC
chr8	73181460	73181461	chr8:73181461:A:G	rs4607600	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr8	73756023	73756024	chr8:73756024:A:G	rs7008333	A	G	G	Sox1.mouse_HMG_3	5	1	+	8.357763678138356	7.12509090707127	TCAATAGCATTCT
chr8	73877720	73877721	chr8:73877721:G:A	rs138836581	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr8	73878803	73878804	chr8:73878804:T:C	rs1393262155	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.550189963435788	-1.301989178657498	TCACCTGCATTGA
chr8	74106149	74106150	chr8:74106150:A:G	rs17326309	A	G	a	Sox1.mouse_HMG_3	4	1	-	9.289476014072367	2.389379992457721	ACAATTGCATTGC
chr8	74419383	74419384	chr8:74419384:G:C	rs6472848	G	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	74778901	74778902	chr8:74778902:T:C	rs6472875	T	C	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr8	75503536	75503537	chr8:75503537:A:G	rs2926588	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	75561162	75561163	chr8:75561163:A:G	rs71529224	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr8	75814511	75814512	chr8:75814512:C:G	rs2977343	C	G	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr8	75823153	75823154	chr8:75823154:A:T	rs73343210	A	T	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	75924186	75924187	chr8:75924187:C:T	rs117497138	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr8	75924187	75924188	chr8:75924188:G:A	rs76295277	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	76000748	76000749	chr8:76000749:A:G	rs10504604	A	G	G	Sox1.mouse_HMG_3	5	1	+	5.588118024984043	4.355445253916955	TCAATACCAATGG
chr8	76305974	76305975	chr8:76305975:G:C	rs9283989	G	C	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr8	76334105	76334106	chr8:76334106:T:G	rs10156271	T	G	G	Sox1.mouse_HMG_3	0	1	+	6.279546785014762	-0.5726323570785214	TCAATTGCAGTCA
chr8	76530212	76530213	chr8:76530213:C:T	rs577418164	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	76666512	76666513	chr8:76666513:T:C	rs58991663	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	76674299	76674300	chr8:76674300:A:C	chr8:76674300:A:C	A	C	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	77000929	77000930	chr8:77000930:T:G	rs78957229	T	G	T	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	77131553	77131554	chr8:77131554:T:C	rs17449553	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr8	77244386	77244387	chr8:77244387:T:C	rs1377250	T	C	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr8	77498858	77498859	chr8:77498859:G:A	rs264814	G	A	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	77767159	77767160	chr8:77767160:A:G	rs7827238	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	77779599	77779600	chr8:77779600:A:G	rs28572159	A	G	A	Sox1.mouse_HMG_3	2	1	+	8.155110713418184	1.2463559341029655	TCAATTCCATTTA
chr8	78646120	78646121	chr8:78646121:C:G	rs62517750	C	G	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	78780507	78780508	chr8:78780508:C:T	rs55839840	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr8	78900308	78900309	chr8:78900309:A:T	rs2013421	A	T	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	78986559	78986560	chr8:78986560:G:A	rs639261	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	79213790	79213791	chr8:79213791:T:A	rs1380638	T	A	T	Sox1.mouse_HMG_3	9	1	+	7.681780559302554	0.7948710515020461	TCAAGGACATTGA
chr8	79356441	79356442	chr8:79356442:T:G	rs10957930	T	G	T	Sox1.mouse_HMG_3	3	1	-	5.642278478053729	3.478113948857303	TCAATAACATTTG
chr8	79356463	79356464	chr8:79356464:G:A	rs7016747	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr8	79636589	79636590	chr8:79636590:A:G	rs17452334	A	G	A	Sox1.mouse_HMG_3	12	1	-	5.300913450561065	5.215136588814364	TCAATTGCATAGT
chr8	79699257	79699258	chr8:79699258:T:C	rs2440631	T	C	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr8	79802443	79802444	chr8:79802444:C:A	rs2247009	C	A	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	79952413	79952414	chr8:79952414:A:G	rs12675564	A	G	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr8	80687100	80687101	chr8:80687101:G:A	rs61202091	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	80757985	80757986	chr8:80757986:T:C	rs73692128	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.7560627246699845	-0.04496443724702015	TCAATTACAGTCA
chr8	80854795	80854796	chr8:80854796:A:G	rs113859071	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	80912901	80912902	chr8:80912902:A:G	rs17475818	A	G	A	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	81004739	81004740	chr8:81004740:A:G	rs920984	A	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	81028300	81028301	chr8:81028301:C:T	rs12676654	C	T	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	81034201	81034202	chr8:81034202:C:A	rs6473260	C	A	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr8	81079113	81079114	chr8:81079114:T:C	rs4515498	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	81100994	81100995	chr8:81100995:C:T	rs56827627	C	T	C	Sox1.mouse_HMG_3	6	1	-	6.040289972650561	6.516805912305786	TCAATAGCATTTT
chr8	81133026	81133027	chr8:81133027:A:C	rs10088396	A	C	C	Sox1.mouse_HMG_3	6	1	+	6.4983555225537994	6.446802179677261	TAAATAACATTGT
chr8	81338546	81338547	chr8:81338547:A:G	rs28597951	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	81489444	81489445	chr8:81489445:G:A	rs16909233	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr8	81597712	81597713	chr8:81597713:G:A	rs10089252	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	81652966	81652967	chr8:81652967:A:G	rs2142316	A	G	G	Sox1.mouse_HMG_3	9	1	-	4.498190840615132	-2.3887186671853757	TCCATTCTATTGA
chr8	81745497	81745498	chr8:81745498:A:G	rs148698659	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	82020645	82020646	chr8:82020646:T:C	rs10091992	T	C	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	82674646	82674647	chr8:82674647:C:T	rs35258328	C	T	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	82674691	82674692	chr8:82674692:C:T	rs34289964	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	82839021	82839022	chr8:82839022:A:G	rs67048258	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	82842027	82842028	chr8:82842028:T:C	rs1997056	T	C	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	84180885	84180886	chr8:84180886:A:C	rs1550215	A	C	.	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	84186102	84186103	chr8:84186103:C:A	rs10112212	C	A	.	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	84470615	84470616	chr8:84470616:T:C	rs115931257	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	84742642	84742643	chr8:84742643:T:C	rs11988092	T	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	84768641	84768642	chr8:84768642:A:G	rs2718964	A	G	A	Sox1.mouse_HMG_3	8	1	+	3.489121170210763	-3.4196336091044572	TCACTTCCACTGC
chr8	84883117	84883118	chr8:84883118:C:A	rs1365672	C	A	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	84949007	84949008	chr8:84949008:G:C	rs9693371	G	C	c	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	84949054	84949055	chr8:84949055:A:T	rs12542468	A	T	a	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	85236181	85236182	chr8:85236182:T:C	rs7827175	T	C	T	Sox1.mouse_HMG_3	3	1	-	7.036975688739483	0.23594852682247813	TCAATGTCATTCT
chr8	85462434	85462435	chr8:85462435:A:G	rs3758078	A	G	G	Sox1.mouse_HMG_3	9	1	-	5.324293807990895	-1.5626156998096112	TCAATTTCATCCA
chr8	85839423	85839424	chr8:85839424:G:T	rs1306162687	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	86512778	86512779	chr8:86512779:T:C	rs35154764	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	86614234	86614235	chr8:86614235:G:T	rs2362267	G	T	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr8	86765559	86765560	chr8:86765560:C:A	rs12549955	C	A	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	87287414	87287415	chr8:87287415:A:C	rs56282645	A	C	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	87428244	87428245	chr8:87428245:A:G	rs16868510	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	87428264	87428265	chr8:87428265:A:C	rs9297322	A	C	C	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr8	87681481	87681482	chr8:87681482:C:G	rs7834472	C	G	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr8	87696429	87696430	chr8:87696430:G:A	rs12543694	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	88871654	88871655	chr8:88871655:A:G	chr8:88871655:A:G	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	89001887	89001888	chr8:89001888:A:G	rs2464701	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	89043705	89043706	chr8:89043706:A:G	rs74382089	A	G	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	89322846	89322847	chr8:89322847:A:C	rs16894311	A	C	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr8	89721042	89721043	chr8:89721043:T:C	rs35489404	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr8	89753371	89753372	chr8:89753372:A:G	rs62533561	A	G	A	Sox1.mouse_HMG_3	12	1	+	5.836823354126688	2.548854877803486	TCAATGACATCAA
chr8	91145110	91145111	chr8:91145111:C:T	rs4374950	C	T	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	91180874	91180875	chr8:91180875:A:G	rs117600669	A	G	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr8	91198017	91198018	chr8:91198018:T:A	rs6987417	T	A	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	91657091	91657092	chr8:91657092:T:C	chr8:91657092:T:C	T	C	T	Sox1.mouse_HMG_3	2	1	-	8.862899987493105	1.9541452081778845	TCAACACCATTGA
chr8	91657101	91657102	chr8:91657102:C:G	chr8:91657102:C:G	C	G	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr8	92014145	92014146	chr8:92014146:A:G	rs7827887	A	G	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	92082560	92082561	chr8:92082561:C:G	rs28594934	C	G	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	92119018	92119019	chr8:92119019:T:C	rs1484562	T	C	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	92119066	92119067	chr8:92119067:T:C	rs1484561	T	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	92351598	92351599	chr8:92351599:G:A	rs115010687	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	92479064	92479065	chr8:92479065:A:C	rs4734231	A	C	A	Sox1.mouse_HMG_3	0	1	+	10.348112286775999	6.321689741039357	ACACTAGCATTGA
chr8	92501457	92501458	chr8:92501458:C:T	rs72675535	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.216786174354869	4.7037083592443985	TCAATGCCATGGT
chr8	93017076	93017077	chr8:93017077:T:C	rs1974945	T	C	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	93058473	93058474	chr8:93058474:A:G	rs279944	A	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr8	93347453	93347454	chr8:93347454:G:A	rs60212314	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.631440427892475	0.673168196778849	TCAATTCCCTTGC
chr8	94200244	94200245	chr8:94200245:G:C	rs755637547	G	C	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	94206387	94206388	chr8:94206388:G:A	rs1161659946	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	94206425	94206426	chr8:94206426:A:G	rs9643341	A	G	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr8	94220722	94220723	chr8:94220723:G:C	rs12549004	G	C	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	94266464	94266465	chr8:94266465:G:A	rs188513003	G	A	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	94347087	94347088	chr8:94347088:C:T	rs60425434	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.445928084107305	1.3360876531214068	TTAAATCCATTGA
chr8	94657929	94657930	chr8:94657930:C:A	rs10808670	C	A	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	94686385	94686386	chr8:94686386:C:T	rs12543514	C	T	T	Sox1.mouse_HMG_3	1	1	+	4.609272739797124	-0.348999491316502	TCAATGTCTTTGC
chr8	94894257	94894258	chr8:94894258:G:A	rs28399555	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	95270027	95270028	chr8:95270028:A:T	chr8:95270028:A:T	A	T	A	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr8	95366624	95366625	chr8:95366625:G:A	rs16917502	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	95376919	95376920	chr8:95376920:G:C	rs28545626	G	C	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr8	95520396	95520397	chr8:95520397:T:G	rs1500906	T	G	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr8	96083661	96083662	chr8:96083662:T:A	rs6994748	T	A	T	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	96104250	96104251	chr8:96104251:T:C	rs80264598	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.565526139566336	-1.3213833682341718	ATAATACCATTGT
chr8	96173193	96173194	chr8:96173194:T:C	rs1169103822	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr8	96617677	96617678	chr8:96617678:G:A	rs10955078	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	96812979	96812980	chr8:96812980:C:T	rs10955084	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	97119530	97119531	chr8:97119531:T:G	rs67964310	T	G	G	Sox1.mouse_HMG_3	6	1	+	7.788948801836025	7.877064020167811	ACAAAATCATTGA
chr8	97351369	97351370	chr8:97351370:A:G	rs2853326	A	G	A	Sox1.mouse_HMG_3	8	1	+	7.1840676736081	0.2753128942928811	TCAATGACATTAG
chr8	97412490	97412491	chr8:97412491:G:A	rs116150778	G	A	G	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	97940597	97940598	chr8:97940598:C:T	rs2512024	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	98116642	98116643	chr8:98116643:G:A	rs59623053	G	A	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	98340408	98340409	chr8:98340409:A:G	rs4346964	A	G	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr8	98807665	98807666	chr8:98807666:G:C	rs2442015	G	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	99024814	99024815	chr8:99024815:C:A	rs78791374	C	A	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr8	100307767	100307768	chr8:100307768:C:T	rs1788167	C	T	T	Sox1.mouse_HMG_3	7	1	+	8.359973232586094	4.727505741490901	TCACTTACATTCA
chr8	100324645	100324646	chr8:100324646:C:T	rs2439456	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr8	100472513	100472514	chr8:100472514:T:C	rs75604920	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.940138917751886	-0.9467705900486207	ACAAAAACATTGT
chr8	100504295	100504296	chr8:100504296:G:T	rs11777328	G	T	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr8	100846421	100846422	chr8:100846422:G:A	rs79678804	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	100925145	100925146	chr8:100925146:A:G	rs3105460	A	G	a	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	101012073	101012074	chr8:101012074:G:A	rs10103227	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	101071223	101071224	chr8:101071224:A:G	rs737707	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.161497642927111	0.3604704810101076	TCAATTCCAGTAA
chr8	101088300	101088301	chr8:101088301:G:A	rs776264	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	101180864	101180865	chr8:101180865:A:G	rs2197624	A	G	g	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	101239928	101239929	chr8:101239929:A:G	rs16899127	A	G	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	101345453	101345454	chr8:101345454:A:G	rs13276679	A	G	G	Sox1.mouse_HMG_3	12	1	+	4.419158931819727	1.1311904554965246	CCAATTCCAGTGA
chr8	101394446	101394447	chr8:101394447:T:C	rs16867608	T	C	T	Sox1.mouse_HMG_3	0	1	+	5.011268957954515	-1.840910184138769	TCAATCACAGTGC
chr8	101602205	101602206	chr8:101602206:A:G	rs7821380	A	G	A	Sox1.mouse_HMG_3	5	1	+	5.521408810281294	4.288736039214205	AAAATATCATTGA
chr8	101882237	101882238	chr8:101882238:C:G	rs543897	C	G	G	Sox1.mouse_HMG_3	11	1	-	6.1894154306266085	1.6225867385070454	ACACAAACATTGA
chr8	102095738	102095739	chr8:102095739:T:C	rs501493	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	102238214	102238215	chr8:102238215:C:G	rs28999671	C	G	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr8	102486088	102486089	chr8:102486089:T:C	rs7002717	T	C	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	102584201	102584202	chr8:102584202:G:A	rs545477396	G	A	G	Sox1.mouse_HMG_3	1	1	-	6.516805912305786	1.5585336811921588	TCAATAACATTTT
chr8	102590501	102590502	chr8:102590502:G:T	rs753754099	G	T	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr8	102790530	102790531	chr8:102790531:C:T	rs62522569	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	102956766	102956767	chr8:102956767:T:A	rs76798148	T	A	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr8	102987836	102987837	chr8:102987837:C:A	rs2513874	C	A	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	103269128	103269129	chr8:103269129:C:A	rs2220826	C	A	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	103343976	103343977	chr8:103343977:G:T	rs827579	G	T	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	103568922	103568923	chr8:103568923:T:C	rs10505045	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.805115575527125	-2.081793932273383	TCAGTGGCATTGC
chr8	103647360	103647361	chr8:103647361:A:G	rs117900220	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	103742488	103742489	chr8:103742489:G:A	rs34195802	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr8	103764603	103764604	chr8:103764604:G:A	rs3110458	G	A	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	104341178	104341179	chr8:104341179:A:T	rs57925786	A	T	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	104362187	104362188	chr8:104362188:A:G	rs2669445	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr8	104678937	104678938	chr8:104678938:A:G	rs193024976	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	104712910	104712911	chr8:104712911:A:G	rs139058924	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	104797096	104797097	chr8:104797097:G:C	rs957335	G	C	a	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	104800182	104800183	chr8:104800183:G:C	rs4734819	G	C	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr8	104902010	104902011	chr8:104902011:T:C	rs716429	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	105076973	105076974	chr8:105076974:T:C	rs2956785	T	C	T	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr8	105145934	105145935	chr8:105145935:G:A	rs73306402	G	A	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	105464789	105464790	chr8:105464790:G:T	rs33916644	G	T	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	105569299	105569300	chr8:105569300:A:T	rs6993770	A	T	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	105642044	105642045	chr8:105642045:G:A	rs2165646	G	A	A	Sox1.mouse_HMG_3	5	1	+	7.286252201614204	8.518924972681292	TCACTGTCATTCA
chr8	106047354	106047355	chr8:106047355:A:G	rs74761492	A	G	A	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr8	106087303	106087304	chr8:106087304:A:G	rs148078989	A	G	A	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	106331032	106331033	chr8:106331033:A:G	rs7834655	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr8	106571443	106571444	chr8:106571444:T:C	rs80349040	T	C	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	106629518	106629519	chr8:106629519:A:G	rs57623085	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	106657148	106657149	chr8:106657149:A:G	rs73699978	A	G	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	107285813	107285814	chr8:107285814:C:T	rs572667654	C	T	C	Sox1.mouse_HMG_3	1	1	-	5.362457070186094	5.362457070186094	AGAATTACATTGA
chr8	107353803	107353804	chr8:107353804:C:T	rs1283651	C	T	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr8	107458157	107458158	chr8:107458158:A:G	rs73313679	A	G	A	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	107483377	107483378	chr8:107483378:T:A	rs16876348	T	A	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	107520158	107520159	chr8:107520159:C:G	rs146593322	C	G	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	107766051	107766052	chr8:107766052:A:G	rs75904373	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.037143391136462	-0.8497661166640449	ACAATACCATAGA
chr8	107867976	107867977	chr8:107867977:A:G	rs937294	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	107889447	107889448	chr8:107889448:T:G	rs6988397	T	G	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	108081803	108081804	chr8:108081804:C:T	rs142665174	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr8	108942645	108942646	chr8:108942646:C:T	rs116911578	C	T	C	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr8	109118798	109118799	chr8:109118799:G:T	rs75832829	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	109172907	109172908	chr8:109172908:T:C	rs13280742	T	C	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr8	109252033	109252034	chr8:109252034:T:G	chr8:109252034:T:G	T	G	T	Sox1.mouse_HMG_3	12	1	-	12.937239412751108	10.438021508933259	ACAATACCATTGA
chr8	109448258	109448259	chr8:109448259:G:T	rs1673407	G	T	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr8	109720374	109720375	chr8:109720375:A:G	rs3133949	A	G	A	Sox1.mouse_HMG_3	11	1	+	4.744400798806634	8.854241229792532	TCAATACCTTTAA
chr8	109720378	109720379	chr8:109720379:A:G	rs182283114	A	G	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr8	109936618	109936619	chr8:109936619:A:G	rs7007649	A	G	G	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	110864580	110864581	chr8:110864581:G:T	rs73700751	G	T	G	Sox1.mouse_HMG_3	1	1	-	4.3382707979772235	-2.564481989382121	TCAATTTCATGGG
chr8	110959065	110959066	chr8:110959066:C:A	rs4637866	C	A	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr8	111070848	111070849	chr8:111070849:G:A	rs77372459	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	111070855	111070856	chr8:111070856:T:C	rs74895881	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	111469107	111469108	chr8:111469108:G:A	rs6992309	G	A	G	Sox1.mouse_HMG_3	11	1	+	4.368585286553667	0.2587448555677687	TGAATTCCAGTGA
chr8	111519161	111519162	chr8:111519162:T:C	rs12682170	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.753059556507208	-2.1338499512933007	TCAATACCATGAA
chr8	111740281	111740282	chr8:111740282:T:G	rs6469376	T	G	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	112195863	112195864	chr8:112195864:G:A	rs12114136	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.871192816813696	5.9569696785604	ACAATACCATTCC
chr8	112465256	112465257	chr8:112465257:C:T	rs61000735	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	112888137	112888138	chr8:112888138:T:C	rs2125553	T	C	C	Sox1.mouse_HMG_3	6	1	-	5.268339517231407	4.791823577576185	TCAAGGACATTGT
chr8	113625600	113625601	chr8:113625601:T:G	rs10955669	T	G	t	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	115020764	115020765	chr8:115020765:T:A	rs76876245	T	A	T	Sox1.mouse_HMG_3	11	1	-	5.838889293661605	3.064427327040144	TCACTTTCATTAT
chr8	115257411	115257412	chr8:115257412:T:A	rs60661746	T	A	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr8	115315064	115315065	chr8:115315065:T:A	rs143142224	T	A	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr8	115405965	115405966	chr8:115405966:G:A	rs231149	G	A	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	117707101	117707102	chr8:117707102:A:G	rs734650	A	G	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	117739465	117739466	chr8:117739466:G:A	rs4876737	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	117850821	117850822	chr8:117850822:T:C	rs11781699	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr8	117957428	117957429	chr8:117957429:G:A	rs139559707	G	A	G	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	117957435	117957436	chr8:117957436:C:T	chr8:117957436:C:T	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	118009432	118009433	chr8:118009433:C:A	rs17453742	C	A	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	118009433	118009434	chr8:118009434:G:A	rs375146234	G	A	G	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	118048812	118048813	chr8:118048813:T:C	rs577224952	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr8	118440286	118440287	chr8:118440287:C:T	rs10955883	C	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	118521577	118521578	chr8:118521578:C:A	rs9297588	C	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr8	118817767	118817768	chr8:118817768:A:G	rs3134075	A	G	G	Sox1.mouse_HMG_3	4	1	-	7.46028869997766	0.560192678363014	TCAATTTCATTCC
chr8	119114254	119114255	chr8:119114255:T:G	rs16892081	T	G	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	119410558	119410559	chr8:119410559:T:C	rs58936256	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr8	119504648	119504649	chr8:119504649:A:C	rs10086941	A	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	119603082	119603083	chr8:119603083:C:T	rs1374100	C	T	T	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr8	119908739	119908740	chr8:119908740:A:G	rs7017583	A	G	A	Sox1.mouse_HMG_3	8	1	-	5.2041394745287075	5.2041394745287075	TCAATTTCTTTGT
chr8	120030817	120030818	chr8:120030818:C:G	rs12542032	C	G	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	120041186	120041187	chr8:120041187:A:G	rs7829101	A	G	A	Sox1.mouse_HMG_3	6	1	-	4.952984872119121	5.466062687229593	TCACTGTCATGGA
chr8	120079461	120079462	chr8:120079462:A:G	rs73704220	A	G	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr8	120266710	120266711	chr8:120266711:A:G	rs16893791	A	G	A	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr8	120566850	120566851	chr8:120566851:A:G	rs7826902	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	120750702	120750703	chr8:120750703:T:C	rs11997006	T	C	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	120809194	120809195	chr8:120809195:C:T	rs79227784	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	120809454	120809455	chr8:120809455:C:T	rs116715160	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr8	121017064	121017065	chr8:121017065:C:T	rs16894535	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr8	121017075	121017076	chr8:121017076:G:A	rs73333065	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	121132755	121132756	chr8:121132756:C:T	rs1560771	C	T	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr8	121348606	121348607	chr8:121348607:G:A	rs901563	G	A	A	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr8	121455364	121455365	chr8:121455365:G:A	rs10505402	G	A	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	121558172	121558173	chr8:121558173:T:A	rs7016865	T	A	T	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	121680339	121680340	chr8:121680340:G:A	rs10113295	G	A	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr8	121770719	121770720	chr8:121770720:A:G	rs17243536	A	G	A	Sox1.mouse_HMG_3	6	1	-	11.481843156884748	11.994920971995217	TCAATATCAGTGA
chr8	121811418	121811419	chr8:121811419:T:G	rs1371719	T	G	G	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr8	121818916	121818917	chr8:121818917:C:G	rs78299777	C	G	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	122084684	122084685	chr8:122084685:C:T	rs6981337	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr8	122188488	122188489	chr8:122188489:A:C	rs7827291	A	C	A	Sox1.mouse_HMG_3	2	1	+	4.240873705502631	-2.667881073812589	TCAAAACCACTGA
chr8	122334806	122334807	chr8:122334807:G:C	rs34811381	G	C	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr8	122746700	122746701	chr8:122746701:C:T	rs6981534	C	T	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr8	122806165	122806166	chr8:122806166:G:A	rs748002897	G	A	G	Sox1.mouse_HMG_3	10	1	-	4.936838211122424	9.572051006927037	TTAATGCCATCGA
chr8	122957782	122957783	chr8:122957783:T:C	rs56129936	T	C	T	Sox1.mouse_HMG_3	8	1	-	8.862899987493106	1.9541452081778845	TCAATACCATGGA
chr8	123072233	123072234	chr8:123072234:C:T	chr8:123072234:C:T	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr8	123161545	123161546	chr8:123161546:C:T	rs78613803	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr8	123161546	123161547	chr8:123161547:C:T	rs74513264	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	123272131	123272132	chr8:123272132:T:C	rs7014857	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.412629352751896	-1.474280155048611	ACATTTCCATTGA
chr8	123539892	123539893	chr8:123539893:C:T	rs62521287	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	123539919	123539920	chr8:123539920:G:C	rs2280921	G	C	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr8	123578267	123578268	chr8:123578268:T:C	rs72711207	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr8	123618111	123618112	chr8:123618112:T:C	rs7821932	T	C	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	123671230	123671231	chr8:123671231:T:A	rs73324239	T	A	t	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr8	123677568	123677569	chr8:123677569:C:G	rs556922458	C	G	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	123677599	123677600	chr8:123677600:G:C	rs56290760	G	C	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	123677606	123677607	chr8:123677607:A:C	rs4870864	A	C	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr8	123844887	123844888	chr8:123844888:G:C	rs6987803	G	C	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr8	124153581	124153582	chr8:124153582:G:A	rs757357438	G	A	g	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	124400369	124400370	chr8:124400370:A:G	rs192426868	A	G	a	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	124415934	124415935	chr8:124415935:T:C	rs10086126	T	C	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	124562130	124562131	chr8:124562131:G:A	rs72714718	G	A	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr8	124669607	124669608	chr8:124669608:T:C	rs7016031	T	C	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	124690168	124690169	chr8:124690169:G:A	rs372232387	G	A	G	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	124690180	124690181	chr8:124690181:G:C	rs183570785	G	C	g	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	124896371	124896372	chr8:124896372:C:T	rs6470322	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr8	124896372	124896373	chr8:124896373:T:C	rs11783773	T	C	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr8	125220041	125220042	chr8:125220042:A:G	rs16900447	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr8	125255387	125255388	chr8:125255388:T:G	rs7008482	T	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr8	125358636	125358637	chr8:125358637:T:G	rs6651237	T	G	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr8	125517163	125517164	chr8:125517164:G:C	rs4352874	G	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	125517170	125517171	chr8:125517171:T:C	rs4347008	T	C	C	Sox1.mouse_HMG_3	12	1	-	6.195419508808566	2.907451032485364	TCAATGCCAGTCA
chr8	125546957	125546958	chr8:125546958:T:G	rs6988015	T	G	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	125546983	125546984	chr8:125546984:G:A	rs188678347	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr8	125636239	125636240	chr8:125636240:A:G	rs60074719	A	G	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	125853865	125853866	chr8:125853866:T:C	rs17428505	T	C	T	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	126260596	126260597	chr8:126260597:C:T	rs11780933	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	126580335	126580336	chr8:126580336:G:T	rs6470452	G	T	T	Sox1.mouse_HMG_3	1	1	-	6.59434130935213	-0.30841147800721513	TCACTAACAGTGG
chr8	126595979	126595980	chr8:126595980:A:T	rs4388422	A	T	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr8	126596322	126596323	chr8:126596323:G:A	rs7000438	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	126668328	126668329	chr8:126668329:A:T	rs16901632	A	T	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	126750254	126750255	chr8:126750255:C:A	rs75494948	C	A	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	126885214	126885215	chr8:126885215:C:T	rs4871749	C	T	T	Sox1.mouse_HMG_3	4	1	+	4.393812082979352	11.293908104593998	TCAACGACATTGG
chr8	126896552	126896553	chr8:126896553:T:A	rs1003273427	T	A	T	Sox1.mouse_HMG_3	5	1	+	5.412409026322683	6.135991924404889	TCAAATGCATTCA
chr8	127253847	127253848	chr8:127253848:C:T	rs954559696	C	T	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr8	127490337	127490338	chr8:127490338:C:T	rs7820229	C	T	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	127564089	127564090	chr8:127564090:G:C	rs10956374	G	C	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	127591194	127591195	chr8:127591195:C:T	rs4552863	C	T	C	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr8	127616355	127616356	chr8:127616356:C:T	rs6470552	C	T	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr8	127918902	127918903	chr8:127918903:C:T	rs116650414	C	T	c	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr8	127949500	127949501	chr8:127949501:C:T	rs13250390	C	T	C	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr8	127981474	127981475	chr8:127981475:C:T	rs115311148	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr8	128007285	128007286	chr8:128007286:C:A	rs73355697	C	A	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr8	128019487	128019488	chr8:128019488:G:A	rs2033098	G	A	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	128033719	128033720	chr8:128033720:A:T	rs182212638	A	T	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	128184799	128184800	chr8:128184800:G:T	rs80272901	G	T	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	128205662	128205663	chr8:128205663:C:T	rs11989994	C	T	C	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr8	128376640	128376641	chr8:128376641:A:T	rs112287406	A	T	A	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr8	128557124	128557125	chr8:128557125:G:A	rs1561924	G	A	A	Sox1.mouse_HMG_3	5	1	+	12.366158708844239	13.598831479911325	TCACTGCCATTGA
chr8	128735008	128735009	chr8:128735009:G:T	rs142640136	G	T	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr8	128754564	128754565	chr8:128754565:A:G	rs6470656	A	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr8	128774218	128774219	chr8:128774219:A:G	rs4140707	A	G	G	Sox1.mouse_HMG_3	10	1	-	6.364619185675924	1.7294063898713092	TTAATTACAGTGA
chr8	128939522	128939523	chr8:128939523:C:T	rs7815993	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr8	129001724	129001725	chr8:129001725:C:T	rs7836274	C	T	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr8	129004817	129004818	chr8:129004818:G:A	rs16903947	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	129241196	129241197	chr8:129241197:G:C	rs7817451	G	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	129370992	129370993	chr8:129370993:C:T	rs6470727	C	T	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr8	129417856	129417857	chr8:129417857:A:G	rs2719218	A	G	G	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr8	129417873	129417874	chr8:129417874:T:C	rs2630507	T	C	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr8	129707471	129707472	chr8:129707472:A:T	rs7816131	A	T	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	129707874	129707875	chr8:129707875:T:C	rs10110842	T	C	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr8	129998558	129998559	chr8:129998559:C:T	rs112271978	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	130220315	130220316	chr8:130220316:G:T	rs77773581	G	T	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr8	130313877	130313878	chr8:130313878:C:A	rs76367770	C	A	C	Sox1.mouse_HMG_3	9	1	+	5.144195826422308	5.144195826422308	TCAATGCCACTGC
chr8	130313884	130313885	chr8:130313885:C:T	rs34962169	C	T	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	130527562	130527563	chr8:130527563:G:A	rs56309541	G	A	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr8	130809264	130809265	chr8:130809265:C:G	rs989403	C	G	C	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr8	131446022	131446023	chr8:131446023:A:G	rs1430314	A	G	A	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	131588424	131588425	chr8:131588425:G:A	rs277013	G	A	A	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr8	132400402	132400403	chr8:132400403:T:A	rs28391818	T	A	T	Sox1.mouse_HMG_3	12	1	-	5.47786836911129	3.064427327040144	TCACTTTCATTTA
chr8	132453911	132453912	chr8:132453912:C:T	rs907878917	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr8	132675779	132675780	chr8:132675780:T:A	rs150988247	T	A	t	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr8	133014463	133014464	chr8:133014464:A:G	rs76131403	A	G	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr8	133203267	133203268	chr8:133203268:C:T	rs145447010	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	133274157	133274158	chr8:133274158:G:A	rs2929996	G	A	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	133462349	133462350	chr8:133462350:G:A	rs2736870	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr8	133579537	133579538	chr8:133579538:T:C	rs73363005	T	C	T	Sox1.mouse_HMG_3	6	1	+	5.9495676441256276	6.462645459236098	TCAATATCACTGT
chr8	133655419	133655420	chr8:133655420:G:C	rs10097033	G	C	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr8	133674830	133674831	chr8:133674831:G:T	rs79850773	G	T	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr8	133674860	133674861	chr8:133674861:G:A	rs115000355	G	A	g	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr8	133845788	133845789	chr8:133845789:G:A	rs7832591	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	133902827	133902828	chr8:133902828:T:G	rs13255744	T	G	T	Sox1.mouse_HMG_3	5	1	+	5.768339133249473	5.259249260264593	ACACTTTCAGTGA
chr8	133902838	133902839	chr8:133902839:G:T	rs6471169	G	T	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	133902845	133902846	chr8:133902846:T:C	rs7846118	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr8	134078096	134078097	chr8:134078097:T:C	rs7842219	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.5010122882984955	-0.38589721950201183	TCAAGAACATTGT
chr8	134228551	134228552	chr8:134228552:C:A	rs57909274	C	A	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	134446064	134446065	chr8:134446065:T:C	rs13281592	T	C	t	Sox1.mouse_HMG_3	9	1	+	6.658695308789385	-0.2282141990111224	TCAAAGACATTGG
chr8	134516201	134516202	chr8:134516202:C:T	rs74524784	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr8	134522462	134522463	chr8:134522463:C:T	rs10283274	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	134552542	134552543	chr8:134552543:G:T	rs4909482	G	T	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	134757645	134757646	chr8:134757646:A:G	rs67047054	A	G	a	Sox1.mouse_HMG_3	12	1	-	12.625972068954397	12.540195207207693	TCAATTCCATTGT
chr8	134757669	134757670	chr8:134757670:G:A	rs111593990	G	A	g	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr8	134777779	134777780	chr8:134777780:G:A	rs77039133	G	A	g	Sox1.mouse_HMG_3	11	1	+	5.259680759530836	1.1498403285449372	TCTATGACATTGT
chr8	134832424	134832425	chr8:134832425:C:T	rs1013376110	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr8	135418090	135418091	chr8:135418091:C:A	rs716035	C	A	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr8	135418103	135418104	chr8:135418104:G:A	rs117970095	G	A	G	Sox1.mouse_HMG_3	7	1	-	6.248445694038804	2.615978202943612	ACACTTTCATTGG
chr8	135516340	135516341	chr8:135516341:C:G	rs6992764	C	G	C	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr8	135610910	135610911	chr8:135610911:T:C	rs34951743	T	C	T	Sox1.mouse_HMG_3	9	1	+	4.903539479767016	-1.9833700280334914	ACAGTGCCATTGA
chr8	135714506	135714507	chr8:135714507:C:T	rs7814248	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr8	135731300	135731301	chr8:135731301:G:A	rs7832101	G	A	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr8	135762337	135762338	chr8:135762338:A:G	rs77820792	A	G	a	Sox1.mouse_HMG_3	2	1	+	5.292254692860492	-1.6165000864547279	TCAATTGCCTTGT
chr8	136026717	136026718	chr8:136026718:T:C	chr8:136026718:T:C	T	C	T	Sox1.mouse_HMG_3	6	1	+	12.362170766718648	12.87524858182912	TCACTTTCATTGA
chr8	136040980	136040981	chr8:136040981:G:A	rs2317349	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	136059370	136059371	chr8:136059371:C:T	rs13274132	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	136143332	136143333	chr8:136143333:G:A	rs4909572	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr8	136415950	136415951	chr8:136415951:G:A	rs6577728	G	A	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	137150967	137150968	chr8:137150968:A:G	rs7009688	A	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr8	137303845	137303846	chr8:137303846:A:G	rs10105942	A	G	A	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr8	137582556	137582557	chr8:137582557:T:C	rs28451997	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr8	138171608	138171609	chr8:138171609:A:T	rs10103726	A	T	A	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	138176554	138176555	chr8:138176555:G:A	rs4430137	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	138177258	138177259	chr8:138177259:T:A	rs6985633	T	A	A	Sox1.mouse_HMG_3	4	1	+	9.107173544716586	4.4719607489119735	TCACTTCCAGTGA
chr8	138196569	138196570	chr8:138196570:T:C	rs4909749	T	C	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	138400288	138400289	chr8:138400289:T:A	rs4419816	T	A	A	Sox1.mouse_HMG_3	3	1	-	5.206477831113791	-1.5945493308032155	TCAATTGCCTTGC
chr8	138415790	138415791	chr8:138415791:G:T	rs35925122	G	T	G	Sox1.mouse_HMG_3	1	1	-	7.286252201614204	0.38349941425486067	TCACTGTCATTCA
chr8	138793207	138793208	chr8:138793208:A:C	rs78110007	A	C	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr8	138955673	138955674	chr8:138955674:C:T	rs115065915	C	T	C	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr8	139096465	139096466	chr8:139096466:A:G	rs78193702	A	G	A	Sox1.mouse_HMG_3	3	1	+	5.927722372610916	-0.873304789306091	TCAATATCCTTGT
chr8	139096478	139096479	chr8:139096479:T:C	rs79705081	T	C	c	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	139097280	139097281	chr8:139097281:C:T	rs2202559	C	T	T	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr8	139197499	139197500	chr8:139197500:T:C	rs148539313	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.284133141238696	-1.624621638076524	TCAATGACATTTT
chr8	139197504	139197505	chr8:139197505:T:C	rs12544421	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.284133141238696	-1.51689402067831	TCAATGACATTTT
chr8	139533286	139533287	chr8:139533287:A:T	rs4644220	A	T	A	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr8	139592031	139592032	chr8:139592032:C:A	rs10110109	C	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr8	139649167	139649168	chr8:139649168:T:G	rs186352096	T	G	T	Sox1.mouse_HMG_3	5	1	+	5.475261258918142	4.9661713859332615	TCACTTTCACTGA
chr8	139743169	139743170	chr8:139743170:G:A	rs112735695	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr8	139798510	139798511	chr8:139798511:C:T	rs72683235	C	T	T	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr8	140327859	140327860	chr8:140327860:T:C	rs372133407	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr8	140327871	140327872	chr8:140327872:A:C	rs375160681	A	C	A	Sox1.mouse_HMG_3	3	1	+	8.876086501307245	6.7119219721108205	TCAATACCACTGA
chr8	140406374	140406375	chr8:140406375:C:T	rs12677358	C	T	C	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr8	140577304	140577305	chr8:140577305:C:T	rs9694342	C	T	T	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr8	140587898	140587899	chr8:140587899:G:A	rs117060410	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr8	140629528	140629529	chr8:140629529:G:A	rs7004365	G	A	G	Sox1.mouse_HMG_3	10	1	-	7.217868097929156	11.853080893733766	TCACTGTCATCGA
chr8	141199443	141199444	chr8:141199444:C:T	rs6578153	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr8	141465043	141465044	chr8:141465044:C:A	rs7846272	C	A	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr8	141554863	141554864	chr8:141554864:A:G	rs4907402	A	G	-	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr8	141622214	141622215	chr8:141622215:T:C	rs13263959	T	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr8	141816308	141816309	chr8:141816309:T:A	rs117892032	T	A	T	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr8	141826085	141826086	chr8:141826086:T:A	rs6583586	T	A	A	Sox1.mouse_HMG_3	0	1	+	5.1310093126081675	2.3052527162515255	TCAACGCCATTGC
chr8	141930693	141930694	chr8:141930694:G:A	rs114903020	G	A	G	Sox1.mouse_HMG_3	6	1	+	15.338033412329064	15.81454935198429	TCAATAGCATTGA
chr8	141932425	141932426	chr8:141932426:C:T	rs117940800	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr8	142080122	142080123	chr8:142080123:G:A	rs6992003	G	A	g	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr8	142143260	142143261	chr8:142143261:G:A	rs75785598	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr8	142143282	142143283	chr8:142143283:G:C	rs11997501	G	C	C	Sox1.mouse_HMG_3	5	1	-	6.050548307883615	9.353862989915918	TCACTCTCATTGC
chr8	142231142	142231143	chr8:142231143:C:T	rs56031226	C	T	C	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr8	142243105	142243106	chr8:142243106:G:A	rs6583608	G	A	G	Sox1.mouse_HMG_3	7	1	-	6.750288801173218	3.1178213100780248	TCACCAACATTGA
chr8	142331972	142331973	chr8:142331973:C:T	rs72687392	C	T	C	Sox1.mouse_HMG_3	12	1	+	2.95818602571117	3.0439628874578726	TCACTGCCTTTGC
chr8	142394752	142394753	chr8:142394753:A:G	rs28433910	A	G	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr8	142675618	142675619	chr8:142675619:T:C	rs2920283	T	C	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr8	142865588	142865589	chr8:142865589:G:T	rs56306889	G	T	G	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr8	142905774	142905775	chr8:142905775:G:A	rs6987382	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr8	142905801	142905802	chr8:142905802:T:A	rs4736357	T	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	143059200	143059201	chr8:143059201:G:C	rs7005116	G	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr8	143201129	143201130	chr8:143201130:A:G	rs12548918	A	G	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr8	143365545	143365546	chr8:143365546:G:A	rs71520510	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr8	143467325	143467326	chr8:143467326:A:G	rs188342475	A	G	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr8	143467353	143467354	chr8:143467354:G:A	rs141299726	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr8	143967774	143967775	chr8:143967775:T:C	rs112641794	T	C	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr8	144554421	144554422	chr8:144554422:A:C	rs112396175	A	C	C	Sox1.mouse_HMG_3	9	1	-	5.41791463900851	1.6498396018959767	TCACTGGCATTAT
chr8	144575043	144575044	chr8:144575044:C:T	rs113859476	C	T	C	Sox1.mouse_HMG_3	6	1	+	5.214129408610173	4.701051593499702	TAAATGCCATTGT
chr8	144575048	144575049	chr8:144575049:G:A	rs112331774	G	A	G	Sox1.mouse_HMG_3	11	1	+	5.214129408610173	1.1042889776242752	TAAATGCCATTGT
chr8	144687846	144687847	chr8:144687847:A:G	rs367593356	A	G	-	Sox1.mouse_HMG_3	5	1	+	6.580037249663468	5.347364478596379	ACACTAGCAGTGA
chr8	144687849	144687850	chr8:144687850:A:G	rs2956181	A	G	-	Sox1.mouse_HMG_3	8	1	+	6.580037249663468	-0.3287175296517535	ACACTAGCAGTGA
chr8	144924000	144924001	chr8:144924001:T:C	rs3879821	T	C	c	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	243769	243770	chr9:243770:A:G	rs76781072	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	326766	326767	chr9:326767:C:T	rs1556022	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr9	344689	344690	chr9:344690:T:C	rs7873573	T	C	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr9	474204	474205	chr9:474205:A:G	rs7867795	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	474238	474239	chr9:474239:G:A	rs7850568	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	479586	479587	chr9:479587:G:C	rs10815059	G	C	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr9	534257	534258	chr9:534258:G:C	rs7031554	G	C	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr9	712136	712137	chr9:712137:G:C	rs912175	G	C	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	739735	739736	chr9:739736:T:C	rs7869472	T	C	T	Sox1.mouse_HMG_3	9	1	+	7.581922976094068	0.6950134682935618	TTAATTCCATTGC
chr9	800918	800919	chr9:800919:A:G	rs7019952	A	G	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	887018	887019	chr9:887019:A:G	rs10815945	A	G	A	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	978107	978108	chr9:978108:T:C	rs279890	T	C	C	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr9	1222607	1222608	chr9:1222608:C:G	rs10960495	C	G	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr9	1428033	1428034	chr9:1428034:G:A	rs10961409	G	A	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr9	1428058	1428059	chr9:1428059:C:A	rs10961410	C	A	C	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr9	1459662	1459663	chr9:1459663:T:C	rs10114417	T	C	T	Sox1.mouse_HMG_3	9	1	+	10.010720555569492	3.1238110477689855	ACAATATCATTGT
chr9	1841393	1841394	chr9:1841394:T:A	rs10756957	T	A	t	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr9	1940291	1940292	chr9:1940292:G:C	rs779722467	G	C	g	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr9	1940320	1940321	chr9:1940321:T:C	rs139438220	T	C	t	Sox1.mouse_HMG_3	9	1	+	9.748911925677513	2.8620024178770054	TCAATTCAATTGA
chr9	1995748	1995749	chr9:1995749:C:G	rs10811256	C	G	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	2228076	2228077	chr9:2228077:A:G	rs7350291	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.441728962500715	-2.4583670591139324	CCAATGACATTGG
chr9	2228088	2228089	chr9:2228089:C:T	rs62528850	C	T	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	2287690	2287691	chr9:2287691:C:T	rs12380302	C	T	C	Sox1.mouse_HMG_3	12	1	+	5.1739038977841325	5.259680759530836	TCAATGACTTTGC
chr9	2355671	2355672	chr9:2355672:G:A	rs10811929	G	A	A	Sox1.mouse_HMG_3	7	1	-	5.790721388167228	2.158253897072035	TCATTTACATTGC
chr9	2526148	2526149	chr9:2526149:G:C	rs2183736	G	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr9	2559580	2559581	chr9:2559581:C:A	rs2492589	C	A	A	Sox1.mouse_HMG_3	7	1	+	5.143721527512412	-0.1467796578356182	TAAATAACAGTGA
chr9	2640804	2640805	chr9:2640805:G:A	rs10967306	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.541531205735215	0.5832589746215879	TCACTTGCCTTGA
chr9	2776517	2776518	chr9:2776518:T:C	rs10757675	T	C	c	Sox1.mouse_HMG_3	8	1	-	4.492880942676994	-2.4158738366382275	TCAGTGACATTGG
chr9	3155801	3155802	chr9:3155802:G:T	rs10970366	G	T	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	3733603	3733604	chr9:3733604:T:C	rs10973264	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	3830453	3830454	chr9:3830454:G:A	rs186684793	G	A	G	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	3840624	3840625	chr9:3840625:G:T	rs10758488	G	T	T	Sox1.mouse_HMG_3	11	1	+	5.310903727309556	-1.5733986702978027	AAAATTCCATTGA
chr9	3859603	3859604	chr9:3859604:C:T	rs16919799	C	T	T	Sox1.mouse_HMG_3	6	1	+	4.4960153346923715	3.9829375195819003	TCACTCCCATTCA
chr9	3917216	3917217	chr9:3917217:T:G	rs148803132	T	G	T	Sox1.mouse_HMG_3	10	1	+	5.847947502820089	-1.052148518794559	TAAATATCATTGC
chr9	4005057	4005058	chr9:4005058:G:T	rs146737590	G	T	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr9	4027292	4027293	chr9:4027293:G:C	rs637742	G	C	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	4029655	4029656	chr9:4029656:G:A	rs35980996	G	A	G	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr9	4225720	4225721	chr9:4225721:T:C	rs16920940	T	C	T	Sox1.mouse_HMG_3	3	1	+	5.281631515182347	9.918494147902928	TCATTGACATTGC
chr9	4226629	4226630	chr9:4226630:C:T	rs10814891	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr9	4226642	4226643	chr9:4226643:T:C	rs10814892	T	C	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	4292847	4292848	chr9:4292848:A:G	rs17660864	A	G	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr9	4576773	4576774	chr9:4576774:G:A	rs1471786	G	A	G	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr9	4636989	4636990	chr9:4636990:G:A	rs4740797	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	4788009	4788010	chr9:4788010:C:G	rs34561525	C	G	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	4788042	4788043	chr9:4788043:A:T	rs34133396	A	T	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr9	4932652	4932653	chr9:4932653:T:G	rs7034721	T	G	G	Sox1.mouse_HMG_3	0	1	+	4.3967899919871485	-2.455389150106134	TCACTACCATCCA
chr9	5389418	5389419	chr9:5389419:G:A	rs111832850	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	5439774	5439775	chr9:5439775:C:T	rs3824439	C	T	C	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr9	5459418	5459419	chr9:5459419:C:T	rs1411262	C	T	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr9	5515206	5515207	chr9:5515207:A:C	rs59898184	A	C	C	Sox1.mouse_HMG_3	6	1	+	4.852529778905107	4.800976436028569	CCAATAACATTAA
chr9	5517264	5517265	chr9:5517265:G:A	rs28581351	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	5742084	5742085	chr9:5742085:C:T	rs4742120	C	T	C	Sox1.mouse_HMG_3	3	1	+	5.988339074028612	1.3514764413080311	TCACTTCCACTGA
chr9	6735934	6735935	chr9:6735935:C:T	rs73403191	C	T	C	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr9	6786417	6786418	chr9:6786418:G:T	rs7045291	G	T	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr9	6795051	6795052	chr9:6795052:T:A	rs7847729	T	A	T	Sox1.mouse_HMG_3	0	1	+	5.863790782378926	3.038034186022283	TCAATATCACTGC
chr9	6835418	6835419	chr9:6835419:C:T	rs7030531	C	T	C	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr9	6869286	6869287	chr9:6869287:C:G	rs371086531	C	G	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	6986463	6986464	chr9:6986464:G:C	rs35826653	G	C	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr9	6988418	6988419	chr9:6988419:T:C	rs2760648	T	C	C	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr9	6988438	6988439	chr9:6988439:T:C	rs2760649	T	C	T	Sox1.mouse_HMG_3	3	1	-	6.037682862457412	-0.7633442994595929	TCAATAGCAATGT
chr9	6993847	6993848	chr9:6993848:A:C	rs2760660	A	C	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr9	7022909	7022910	chr9:7022910:G:A	rs10975984	G	A	G	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr9	7032775	7032776	chr9:7032776:G:A	rs1407862	G	A	A	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr9	7072097	7072098	chr9:7072098:A:G	rs4740870	A	G	A	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr9	7076462	7076463	chr9:7076463:G:A	rs1570512	G	A	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr9	7121028	7121029	chr9:7121029:C:G	rs10976048	C	G	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr9	7283983	7283984	chr9:7283984:A:G	rs2820935	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	7358782	7358783	chr9:7358783:C:G	rs4742335	C	G	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr9	7461870	7461871	chr9:7461871:T:C	rs2997572	T	C	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr9	7701934	7701935	chr9:7701935:C:G	rs7021768	C	G	C	Sox1.mouse_HMG_3	3	1	+	3.458683861494841	-1.1781787712257399	CCACTACCATTGG
chr9	7979770	7979771	chr9:7979771:A:G	rs10976703	A	G	A	Sox1.mouse_HMG_3	9	1	-	4.335614032232527	-2.551295475567981	TGAATTTCATTGG
chr9	7979796	7979797	chr9:7979797:G:C	rs10976704	G	C	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr9	8053132	8053133	chr9:8053133:T:C	rs150156175	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	8115875	8115876	chr9:8115876:G:A	rs10815762	G	A	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	8232697	8232698	chr9:8232698:T:G	rs10815797	T	G	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr9	8349521	8349522	chr9:8349522:T:A	rs186660828	T	A	T	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	8457046	8457047	chr9:8457047:A:T	rs10121643	A	T	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	8468632	8468633	chr9:8468633:T:C	rs13291309	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	8475676	8475677	chr9:8475677:T:C	rs10977146	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	8695997	8695998	chr9:8695998:A:G	rs1368982	A	G	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	8895410	8895411	chr9:8895411:G:C	rs72704370	G	C	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr9	9537064	9537065	chr9:9537065:T:C	rs16929670	T	C	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	9726250	9726251	chr9:9726251:A:C	rs7048068	A	C	A	Sox1.mouse_HMG_3	0	1	+	6.303986979040932	2.2775644333042906	ACACTGACATTGG
chr9	9912826	9912827	chr9:9912827:A:C	rs10816229	A	C	A	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr9	9919287	9919288	chr9:9919288:G:C	rs10978087	G	C	g	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr9	9920446	9920447	chr9:9920447:A:T	rs151092706	A	T	A	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr9	9951279	9951280	chr9:9951280:G:A	rs73643834	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr9	10104923	10104924	chr9:10104924:T:C	rs4741009	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr9	10174316	10174317	chr9:10174317:C:T	rs35968521	C	T	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	10232976	10232977	chr9:10232977:C:G	rs1322140	C	G	G	Sox1.mouse_HMG_3	3	1	+	7.37436741994599	2.73750478722541	TCACTGGCATTCA
chr9	10505224	10505225	chr9:10505225:T:G	rs75872236	T	G	T	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	10538374	10538375	chr9:10538375:T:A	rs10156436	T	A	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr9	10583826	10583827	chr9:10583827:G:A	rs78588749	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr9	10843307	10843308	chr9:10843308:G:T	rs10756139	G	T	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	11103596	11103597	chr9:11103597:G:A	rs113655831	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr9	11962622	11962623	chr9:11962623:T:A	rs73646822	T	A	t	Sox1.mouse_HMG_3	9	1	+	5.623828088301742	-1.263081419498765	TGAATAACATTGG
chr9	12274757	12274758	chr9:12274758:C:A	rs537325334	C	A	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr9	12274773	12274774	chr9:12274774:T:C	rs12555009	T	C	T	Sox1.mouse_HMG_3	9	1	+	12.450285985050433	5.563376477249927	TCACTTGCATTGA
chr9	12274794	12274795	chr9:12274795:C:T	rs142335293	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	12599560	12599561	chr9:12599561:C:T	rs13283146	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	12681640	12681641	chr9:12681641:G:C	rs10738288	G	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	12712156	12712157	chr9:12712157:G:A	rs1137134	G	A	G	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr9	12717405	12717406	chr9:12717406:G:A	rs12379024	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr9	12735666	12735667	chr9:12735667:G:T	rs7047704	G	T	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr9	12775414	12775415	chr9:12775415:T:C	chr9:12775415:T:C	T	C	T	Sox1.mouse_HMG_3	8	1	-	6.286026656807737	-0.6227281225074848	TCACTGATATTGC
chr9	12878626	12878627	chr9:12878627:C:T	rs552766	C	T	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	12972997	12972998	chr9:12972998:C:T	rs113193298	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr9	13213581	13213582	chr9:13213582:G:A	rs76065022	G	A	G	Sox1.mouse_HMG_3	6	1	+	8.203602712706603	8.680118652361825	TCAAAAGCATTGC
chr9	13399199	13399200	chr9:13399200:T:C	rs17275840	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr9	13451243	13451244	chr9:13451244:A:G	rs2184230	A	G	G	Sox1.mouse_HMG_3	0	1	-	7.639425788114567	0.7872466460212817	TCAATTTCAATGA
chr9	13938910	13938911	chr9:13938911:T:A	rs73403908	T	A	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	13975374	13975375	chr9:13975375:C:T	rs11793194	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr9	14022404	14022405	chr9:14022405:G:T	rs10810078	G	T	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr9	14030755	14030756	chr9:14030756:G:A	rs1478925766	G	A	G	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr9	14030807	14030808	chr9:14030808:G:C	chr9:14030808:G:C	G	C	G	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr9	14102939	14102940	chr9:14102940:C:T	rs497789	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr9	14165206	14165207	chr9:14165207:A:G	rs10961400	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.623828088301742	-1.263081419498765	TAAATAACATTGG
chr9	14215318	14215319	chr9:14215319:A:G	rs7044603	A	G	A	Sox1.mouse_HMG_3	10	1	-	6.694883347008227	2.0596705512036135	TTAATACCATTAA
chr9	14396132	14396133	chr9:14396133:C:T	rs16931701	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	14807195	14807196	chr9:14807196:A:C	rs12347233	A	C	A	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr9	15159379	15159380	chr9:15159380:C:T	rs9298726	C	T	T	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr9	15176943	15176944	chr9:15176944:G:A	rs76724127	G	A	G	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr9	15525196	15525197	chr9:15525197:C:G	rs1828382	C	G	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	15966437	15966438	chr9:15966438:G:T	rs2987011	G	T	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr9	16257740	16257741	chr9:16257741:A:G	rs78112129	A	G	A	Sox1.mouse_HMG_3	3	1	+	7.646020840433303	0.8449936785162984	TCAATGCCATTTA
chr9	16309560	16309561	chr9:16309561:A:G	rs7032123	A	G	A	Sox1.mouse_HMG_3	2	1	+	5.534216636229452	-1.3745381430857688	ACACTTACATTCA
chr9	16309566	16309567	chr9:16309567:A:G	rs9406619	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.534216636229452	-1.3745381430857688	ACACTTACATTCA
chr9	16336473	16336474	chr9:16336474:A:T	rs66838939	A	T	T	Sox1.mouse_HMG_3	7	1	-	8.894113384565893	7.236079690313057	TCAATAATATTGG
chr9	16343905	16343906	chr9:16343906:T:G	rs77364601	T	G	T	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr9	16795589	16795590	chr9:16795590:A:T	rs16935071	A	T	A	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	16810615	16810616	chr9:16810616:G:C	rs10810638	G	C	G	Sox1.mouse_HMG_3	12	1	+	4.018014839937738	4.806765412443092	TCACAGGCATTGG
chr9	17230087	17230088	chr9:17230088:G:A	rs10962917	G	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	17674873	17674874	chr9:17674874:G:A	rs4418424	G	A	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	17674920	17674921	chr9:17674921:G:C	rs4601434	G	C	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr9	17810447	17810448	chr9:17810448:A:G	rs142247745	A	G	A	Sox1.mouse_HMG_3	0	1	-	4.350034272916211	-2.502144869177074	TCACTAACACTGT
chr9	17828438	17828439	chr9:17828439:T:C	rs7041618	T	C	T	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr9	17965724	17965725	chr9:17965725:T:C	rs16936157	T	C	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr9	18142396	18142397	chr9:18142397:G:A	rs79811056	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	18238315	18238316	chr9:18238316:C:T	rs7038985	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	18296815	18296816	chr9:18296816:C:T	rs192566528	C	T	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	18428942	18428943	chr9:18428943:G:A	rs145690887	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr9	18500950	18500951	chr9:18500951:A:G	rs2149875	A	G	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	18739844	18739845	chr9:18739845:C:T	rs2482970	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr9	18786988	18786989	chr9:18786989:G:C	rs72690561	G	C	G	Sox1.mouse_HMG_3	6	1	-	5.894978847638411	5.470016250859725	TCACTTCCATTCT
chr9	18921538	18921539	chr9:18921539:T:C	rs10963841	T	C	T	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	19051969	19051970	chr9:19051970:T:A	rs10123520	T	A	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr9	19138298	19138299	chr9:19138299:G:T	rs4977498	G	T	g	Sox1.mouse_HMG_3	9	1	+	7.213050985803649	10.981126022916182	TCAATTACAGTAA
chr9	19269668	19269669	chr9:19269669:A:C	rs185582748	A	C	-	Sox1.mouse_HMG_3	3	1	+	7.62358250855573	5.459417979359305	TGAATTTCATTGA
chr9	19782499	19782500	chr9:19782500:C:T	rs1887388	C	T	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr9	19867615	19867616	chr9:19867616:A:C	rs10964321	A	C	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr9	20191062	20191063	chr9:20191063:A:G	rs1456960	A	G	G	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr9	20220401	20220402	chr9:20220402:C:T	rs10964478	C	T	C	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr9	20220402	20220403	chr9:20220403:C:T	rs10465019	C	T	C	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr9	20283266	20283267	chr9:20283267:C:T	rs10511679	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr9	20284947	20284948	chr9:20284948:T:A	rs10811341	T	A	A	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr9	20316577	20316578	chr9:20316578:T:C	rs113331801	T	C	T	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr9	20321212	20321213	chr9:20321213:C:T	rs1034585	C	T	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	20756376	20756377	chr9:20756377:A:G	rs146091577	A	G	A	Sox1.mouse_HMG_3	4	1	-	4.369807119569677	-2.5302889020449704	TCTATCACATTGA
chr9	21199680	21199681	chr9:21199681:G:T	rs4977686	G	T	g	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr9	21642590	21642591	chr9:21642591:A:G	rs10757229	A	G	-	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr9	21782164	21782165	chr9:21782165:G:A	rs10811615	G	A	A	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr9	22072111	22072112	chr9:22072112:T:C	rs61374441	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	22197790	22197791	chr9:22197791:T:G	rs11789147	T	G	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr9	22213862	22213863	chr9:22213863:A:G	rs112334799	A	G	A	Sox1.mouse_HMG_3	6	1	+	5.682993770769013	5.206477831113791	TCTATTACATTGC
chr9	23156895	23156896	chr9:23156896:C:T	rs4977830	C	T	C	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr9	23197976	23197977	chr9:23197977:T:C	rs10738653	T	C	T	Sox1.mouse_HMG_3	2	1	+	7.621568458725443	7.621568458725443	TCTATGCCATTGA
chr9	23643683	23643684	chr9:23643684:A:G	rs4977871	A	G	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	23659012	23659013	chr9:23659013:A:G	rs141602257	A	G	A	Sox1.mouse_HMG_3	6	1	-	4.961628238510922	5.474706053621393	TCACTTTTAGTGA
chr9	23659035	23659036	chr9:23659036:G:T	rs77712832	G	T	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr9	24460949	24460950	chr9:24460950:A:G	rs16908392	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	25189608	25189609	chr9:25189609:G:A	rs7865045	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	25255406	25255407	chr9:25255407:C:T	rs767795625	C	T	C	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr9	25393679	25393680	chr9:25393680:C:G	rs10757524	C	G	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr9	25576546	25576547	chr9:25576547:C:A	rs10757554	C	A	C	Sox1.mouse_HMG_3	11	1	-	10.081140879911917	3.196838482304559	TTAATTCCATTGA
chr9	25602722	25602723	chr9:25602723:C:G	rs1986439	C	G	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr9	26265535	26265536	chr9:26265536:G:C	rs10967280	G	C	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr9	26439302	26439303	chr9:26439303:C:G	rs118116921	C	G	C	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr9	26565914	26565915	chr9:26565915:A:C	rs1887221	A	C	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr9	26940154	26940155	chr9:26940155:A:G	rs72719536	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	27441755	27441756	chr9:27441756:G:A	rs544839701	G	A	G	Sox1.mouse_HMG_3	12	1	-	5.179635583086469	5.2654124448331725	ACAATTGCATTAC
chr9	27785865	27785866	chr9:27785866:G:A	rs2773417	G	A	a	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr9	28158882	28158883	chr9:28158883:A:G	rs10812748	A	G	A	Sox1.mouse_HMG_3	8	1	+	5.503535308644347	-1.4052194706708725	TTACTTCCATTGT
chr9	28215695	28215696	chr9:28215696:C:T	rs4604546	C	T	T	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr9	28603862	28603863	chr9:28603863:T:A	rs72715215	T	A	T	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr9	28619492	28619493	chr9:28619493:A:G	rs10968680	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr9	28887251	28887252	chr9:28887252:C:G	rs4352929	C	G	C	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	28926771	28926772	chr9:28926772:T:C	rs2986644	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	28974909	28974910	chr9:28974910:A:G	rs10812904	A	G	G	Sox1.mouse_HMG_3	2	1	+	4.437339657674865	-2.471415121640355	TCATTTTCATTGG
chr9	29070446	29070447	chr9:29070447:T:C	rs60571108	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr9	29078513	29078514	chr9:29078514:C:G	rs13296159	C	G	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr9	29183734	29183735	chr9:29183735:T:C	rs1342247	T	C	C	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	29692247	29692248	chr9:29692248:G:A	rs57255353	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr9	30293858	30293859	chr9:30293859:C:T	rs746433449	C	T	c	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr9	30366575	30366576	chr9:30366576:T:A	rs10114595	T	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	30587689	30587690	chr9:30587690:C:T	rs12378080	C	T	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	30924480	30924481	chr9:30924481:A:G	rs199793339	A	G	A	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr9	30924498	30924499	chr9:30924499:A:G	rs10969977	A	G	A	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	31139612	31139613	chr9:31139613:T:C	rs77443321	T	C	T	Sox1.mouse_HMG_3	6	1	+	5.142814994489864	5.655892809600335	TCAATTTCATTTC
chr9	31373613	31373614	chr9:31373614:T:A	rs13298148	T	A	T	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr9	32378957	32378958	chr9:32378958:A:G	rs10813801	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.208127416654298	-1.6787820911462104	TCTATGCCATTGT
chr9	32480252	32480253	chr9:32480253:A:T	rs17217280	A	T	A	Sox1.mouse_HMG_3	8	1	+	6.078717945093274	-0.830036834221946	TCAATCTCATCGA
chr9	32735549	32735550	chr9:32735550:T:A	rs4879612	T	A	t	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	32777807	32777808	chr9:32777808:C:T	rs7871322	C	T	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	32865018	32865019	chr9:32865019:C:T	rs16918694	C	T	C	Sox1.mouse_HMG_3	11	1	-	5.19554364699418	1.085703216008282	TCACAACCAGTGA
chr9	33028978	33028979	chr9:33028979:C:T	rs12377889	C	T	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr9	33029257	33029258	chr9:33029258:A:C	rs190465417	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	33233023	33233024	chr9:33233024:T:C	rs7044562	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.39165239108439	-2.4093747708326156	TCAATCACAATGA
chr9	33290910	33290911	chr9:33290911:G:A	rs370117392	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr9	33290924	33290925	chr9:33290925:A:T	rs115399783	A	T	A	Sox1.mouse_HMG_3	4	1	+	3.962870875927092	8.598083671731706	TCACAGCCAGTGA
chr9	33466868	33466869	chr9:33466869:T:C	rs116924567	T	C	t	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr9	33571890	33571891	chr9:33571891:C:T	rs10971569	C	T	C	Sox1.mouse_HMG_3	10	1	-	5.061853696059433	5.061853696059433	TCAATATCATGGG
chr9	33896078	33896079	chr9:33896079:A:G	rs34576091	A	G	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	34155113	34155114	chr9:34155114:G:A	rs1969964	G	A	G	Sox1.mouse_HMG_3	7	1	-	4.572370516952003	0.9399030258568106	TCACTTGCAGTAA
chr9	34272086	34272087	chr9:34272087:T:C	rs72731297	T	C	T	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr9	34272091	34272092	chr9:34272092:A:C	rs6476440	A	C	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr9	34378178	34378179	chr9:34378179:C:T	rs3892022	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	34572816	34572817	chr9:34572817:C:T	rs1571401	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr9	34572826	34572827	chr9:34572827:G:C	rs1571402	G	C	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr9	34771232	34771233	chr9:34771233:T:G	rs117042148	T	G	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr9	34832353	34832354	chr9:34832354:G:A	rs117899166	G	A	G	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr9	34960171	34960172	chr9:34960172:C:T	rs145637357	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	34961473	34961474	chr9:34961474:A:G	rs7025995	A	G	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr9	34985493	34985494	chr9:34985494:G:A	rs73497327	G	A	G	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr9	35060748	35060749	chr9:35060749:A:G	rs562381	A	G	G	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr9	35141154	35141155	chr9:35141155:G:A	rs10972340	G	A	g	Sox1.mouse_HMG_3	12	1	+	7.558407000811123	10.846375477134325	TCAATTGCAGTGG
chr9	35495457	35495458	chr9:35495458:T:G	rs570009244	T	G	T	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr9	35641215	35641216	chr9:35641216:G:A	rs55667103	G	A	G	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	35651599	35651600	chr9:35651600:G:T	rs10972546	G	T	G	Sox1.mouse_HMG_3	1	1	-	5.930060729195997	-0.9726920581633471	TCAATAGCCTTGC
chr9	35696078	35696079	chr9:35696079:A:G	rs2145924	A	G	A	Sox1.mouse_HMG_3	3	1	+	4.847365205245339	-1.9536619566716662	ACTATGACATTGA
chr9	35815201	35815202	chr9:35815202:A:G	chr9:35815202:A:G	A	G	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	36026032	36026033	chr9:36026033:G:A	rs72729482	G	A	g	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	36030413	36030414	chr9:36030414:C:T	rs7862640	C	T	c	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr9	36031185	36031186	chr9:36031186:A:T	rs7039141	A	T	a	Sox1.mouse_HMG_3	10	1	-	6.178588748000054	-0.7215072736145929	TCAAAGACAGTGA
chr9	36031186	36031187	chr9:36031187:C:T	rs7039239	C	T	t	Sox1.mouse_HMG_3	9	1	-	6.178588748000054	3.05975427731208	TCAAAGACAGTGA
chr9	36359643	36359644	chr9:36359644:C:T	rs16933238	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr9	36781630	36781631	chr9:36781631:G:A	rs1378469257	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr9	36827259	36827260	chr9:36827260:C:T	rs77457296	C	T	C	Sox1.mouse_HMG_3	7	1	+	4.936838211122424	1.3043707200272314	TTAAAGCCATTGA
chr9	36827260	36827261	chr9:36827261:A:G	rs1410011	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.936838211122424	-1.9719165681927966	TTAAAGCCATTGA
chr9	36888150	36888151	chr9:36888151:T:G	rs4268201	T	G	T	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	36904771	36904772	chr9:36904772:G:A	rs7031673	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	36986445	36986446	chr9:36986446:A:C	rs375760913	A	C	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	37187958	37187959	chr9:37187959:C:A	rs116324989	C	A	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	37289934	37289935	chr9:37289935:A:C	rs10973289	A	C	A	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	37437765	37437766	chr9:37437766:C:G	rs117306138	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr9	37529288	37529289	chr9:37529289:G:A	rs34323368	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr9	37693959	37693960	chr9:37693960:C:T	rs7025444	C	T	T	Sox1.mouse_HMG_3	9	1	-	5.437273700753639	2.3184392300656653	ACAATGCCAGTGC
chr9	37876494	37876495	chr9:37876495:T:C	rs73451233	T	C	T	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	38058667	38058668	chr9:38058668:G:A	rs1928244	G	A	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr9	38107845	38107846	chr9:38107846:G:A	rs75745246	G	A	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr9	38150169	38150170	chr9:38150170:T:G	rs943935	T	G	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	38237696	38237697	chr9:38237697:G:A	rs78000226	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr9	38307485	38307486	chr9:38307486:A:G	rs486764	A	G	G	Sox1.mouse_HMG_3	6	1	-	4.581747135270101	5.094824950380572	TCAAGATCAGTGA
chr9	38389210	38389211	chr9:38389211:G:T	rs62537319	G	T	G	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr9	38389244	38389245	chr9:38389245:T:C	rs62537320	T	C	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr9	38665215	38665216	chr9:38665216:C:T	rs118099253	C	T	c	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr9	39036298	39036299	chr9:39036299:C:G	rs414044	C	G	-	Sox1.mouse_HMG_3	11	1	-	12.988792755627646	8.421964063508083	ACAATAACATTGA
chr9	39082859	39082860	chr9:39082860:C:T	rs56121395	C	T	c	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr9	40990726	40990727	chr9:40990727:G:C	rs1274342225	G	C	.	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr9	41648372	41648373	chr9:41648373:C:G	rs1164981139	C	G	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr9	41800342	41800343	chr9:41800343:G:C	rs151158756	G	C	.	Sox1.mouse_HMG_3	-18	0	-	0	0	.
chr9	42385853	42385854	chr9:42385854:G:A	rs1363851524	G	A	G	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr9	43039478	43039479	chr9:43039479:G:T	rs4929623	G	T	g	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr9	64452131	64452132	chr9:64452132:C:T	rs2322008	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr9	66064228	66064229	chr9:66064229:G:A	rs145269173	G	A	-	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	67823054	67823055	chr9:67823055:A:T	rs28622931	A	T	.	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr9	67823071	67823072	chr9:67823072:A:G	rs28533967	A	G	.	Sox1.mouse_HMG_3	0	1	-	5.28198583927445	-1.570193302818835	TCAATAATATAGA
chr9	68533694	68533695	chr9:68533695:T:C	rs148536917	T	C	T	Sox1.mouse_HMG_3	4	1	+	5.631440427892477	-1.2686555937221724	TCCATTCCATTGC
chr9	68553066	68553067	chr9:68553067:A:G	rs56320925	A	G	A	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr9	68779845	68779846	chr9:68779846:G:A	rs58984094	G	A	G	Sox1.mouse_HMG_3	27	0	-	0	0	.
chr9	68904503	68904504	chr9:68904504:A:G	rs10746969	A	G	A	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	69128909	69128910	chr9:69128910:A:G	rs7019370	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	69128946	69128947	chr9:69128947:T:C	rs35116982	T	C	T	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr9	69155772	69155773	chr9:69155773:T:C	rs35039239	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.212479823069666	-1.6744296847308415	TAAATTGCATTGC
chr9	69599427	69599428	chr9:69599428:T:C	rs112276725	T	C	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr9	69622706	69622707	chr9:69622707:C:T	rs569486605	C	T	C	Sox1.mouse_HMG_3	12	1	+	4.609272739797124	4.695049601543827	TCTATGTCATTGC
chr9	69892142	69892143	chr9:69892143:G:A	rs4744952	G	A	A	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr9	70034293	70034294	chr9:70034294:G:C	rs12553082	G	C	C	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	70081651	70081652	chr9:70081652:A:G	rs1986412	A	G	G	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr9	70414417	70414418	chr9:70414418:G:C	rs115977087	G	C	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr9	70414429	70414430	chr9:70414430:T:C	rs1205461121	T	C	T	Sox1.mouse_HMG_3	4	1	+	8.65322763574235	1.7531316141277045	TCACTGGCATTGG
chr9	70609643	70609644	chr9:70609644:C:T	rs10114679	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr9	70665463	70665464	chr9:70665464:A:G	rs7040454	A	G	A	Sox1.mouse_HMG_3	5	1	+	5.623828088301742	4.391155317234654	TGAATAACATTGG
chr9	70682519	70682520	chr9:70682520:A:G	rs4237243	A	G	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	70947282	70947283	chr9:70947283:T:C	rs150848605	T	C	T	Sox1.mouse_HMG_3	2	1	-	7.128526388605971	0.21977160929075357	TCAATTTCATTAG
chr9	70964444	70964445	chr9:70964445:T:C	rs35806768	T	C	T	Sox1.mouse_HMG_3	9	1	+	5.949673128262427	-0.9372363795380807	TCAGTATCATTGC
chr9	71029899	71029900	chr9:71029900:A:G	rs11142672	A	G	a	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	71492181	71492182	chr9:71492182:T:C	rs10123278	T	C	T	Sox1.mouse_HMG_3	4	1	+	4.338965880549505	-2.561130141065141	TCTATAACATTCA
chr9	71643907	71643908	chr9:71643908:A:G	rs2087716	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	71684723	71684724	chr9:71684724:G:C	rs12237894	G	C	G	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr9	71742529	71742530	chr9:71742530:C:T	rs118079430	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr9	71795217	71795218	chr9:71795218:A:G	rs76872287	A	G	A	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr9	71795231	71795232	chr9:71795232:A:G	rs186801801	A	G	A	Sox1.mouse_HMG_3	9	1	-	6.336560912370588	-0.5503485954299181	ACACTTGCATTGG
chr9	72130299	72130300	chr9:72130300:T:G	rs4237252	T	G	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr9	72293610	72293611	chr9:72293611:C:A	rs12380305	C	A	A	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	72468970	72468971	chr9:72468971:G:A	rs10869179	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr9	72881032	72881033	chr9:72881033:G:A	rs72734830	G	A	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr9	72932695	72932696	chr9:72932696:T:C	rs348463	T	C	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr9	73152668	73152669	chr9:73152669:A:T	rs75902196	A	T	A	Sox1.mouse_HMG_3	10	1	-	5.351665455783365	-1.5484305658312816	TCACTGACATTCC
chr9	73242489	73242490	chr9:73242490:G:T	rs7850771	G	T	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr9	74200393	74200394	chr9:74200394:T:A	rs4263838	T	A	A	Sox1.mouse_HMG_3	9	1	+	12.112894253843926	5.2259847460434194	TCAATTTCATTGT
chr9	74292771	74292772	chr9:74292772:C:T	rs1026381	C	T	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr9	74562690	74562691	chr9:74562691:C:T	rs972903	C	T	t	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	74645312	74645313	chr9:74645313:T:A	rs73650029	T	A	T	Sox1.mouse_HMG_3	9	1	+	4.270581776864455	-2.6163277309360518	TCCAAAACATTGA
chr9	74828507	74828508	chr9:74828508:A:G	rs17060568	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	74946798	74946799	chr9:74946799:G:C	rs113259722	G	C	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	75161577	75161578	chr9:75161578:A:T	rs11144269	A	T	a	Sox1.mouse_HMG_3	2	1	+	6.022853791802557	-0.8859009875126631	TTAATTACATTAA
chr9	75396824	75396825	chr9:75396825:G:A	rs75718389	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.568893304645391	0.6106210735317632	ACAATTTTATTGC
chr9	75451791	75451792	chr9:75451792:G:A	rs73545847	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	75457844	75457845	chr9:75457845:T:C	rs4745404	T	C	C	Sox1.mouse_HMG_3	0	1	+	8.308419889709556	1.4562407476162726	TCACTTCCATTCA
chr9	75488998	75488999	chr9:75488999:C:A	rs1854131	C	A	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr9	75570813	75570814	chr9:75570814:T:G	rs932984	T	G	G	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr9	76155601	76155602	chr9:76155602:G:A	rs7047773	G	A	A	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr9	76228234	76228235	chr9:76228235:C:A	rs883225	C	A	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	76383774	76383775	chr9:76383775:C:T	rs34046058	C	T	C	Sox1.mouse_HMG_3	2	1	+	5.292254692860492	5.292254692860492	TCCATTGCATTGT
chr9	76631122	76631123	chr9:76631123:C:G	rs73650264	C	G	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr9	76688354	76688355	chr9:76688355:T:C	rs116429929	T	C	T	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr9	76725383	76725384	chr9:76725384:G:C	rs4745576	G	C	C	Sox1.mouse_HMG_3	3	1	-	9.536414170362006	4.899551537641425	ACACTTTCATTGA
chr9	77417383	77417384	chr9:77417384:C:A	rs13286867	C	A	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	77543751	77543752	chr9:77543752:C:T	rs142272328	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr9	77596187	77596188	chr9:77596188:G:A	rs36024384	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	77715801	77715802	chr9:77715802:G:C	rs4745664	G	C	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	77854830	77854831	chr9:77854831:G:T	rs7048811	G	T	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	77900461	77900462	chr9:77900462:A:G	rs10781470	A	G	G	Sox1.mouse_HMG_3	12	1	+	5.720916011812896	2.4329475354896943	TCACTACCAGTAA
chr9	78026627	78026628	chr9:78026628:T:C	rs1930543	T	C	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	78559453	78559454	chr9:78559454:G:T	rs3009700	G	T	T	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr9	78865779	78865780	chr9:78865780:A:G	rs7046415	A	G	G	Sox1.mouse_HMG_3	3	1	-	5.464182695628434	10.101045328349015	ACATTTACATTGA
chr9	78899159	78899160	chr9:78899160:G:A	rs73465920	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	78924035	78924036	chr9:78924036:G:A	rs7874303	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	79201983	79201984	chr9:79201984:G:C	rs728987	G	C	T	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr9	79438146	79438147	chr9:79438147:T:C	rs1340123	T	C	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	79438150	79438151	chr9:79438151:C:T	rs13295991	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	79445904	79445905	chr9:79445905:G:T	rs11138221	G	T	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr9	80030229	80030230	chr9:80030230:T:C	rs12337173	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.793172403588715	-0.09373710421179182	TTAATTCCATTGG
chr9	80107891	80107892	chr9:80107892:C:T	rs58071456	C	T	C	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr9	80107899	80107900	chr9:80107900:T:A	rs59433863	T	A	T	Sox1.mouse_HMG_3	-10	0	-	0	0	.
chr9	80366828	80366829	chr9:80366829:C:T	rs7027955	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr9	80366869	80366870	chr9:80366870:C:T	rs7028064	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr9	80385591	80385592	chr9:80385592:C:T	rs7861030	C	T	C	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	80385593	80385594	chr9:80385594:G:A	rs12380683	G	A	G	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	80426395	80426396	chr9:80426396:G:A	rs10512100	G	A	G	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr9	80426951	80426952	chr9:80426952:A:G	rs1109201	A	G	A	Sox1.mouse_HMG_3	9	1	+	5.144195826422308	8.26303029711028	TCAATGCCAATGC
chr9	80679059	80679060	chr9:80679060:G:A	rs72751011	G	A	G	Sox1.mouse_HMG_3	9	1	+	9.169164375638577	6.050329904950603	ACAATACCAGTGA
chr9	80754979	80754980	chr9:80754980:T:C	rs10491934	T	C	T	Sox1.mouse_HMG_3	6	1	+	7.725308133998068	8.238385949108538	TCAGTTTCATTGA
chr9	80946258	80946259	chr9:80946259:G:C	rs17244636	G	C	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	81088502	81088503	chr9:81088503:G:A	rs10867694	G	A	A	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr9	81174325	81174326	chr9:81174326:T:C	rs10867703	T	C	T	Sox1.mouse_HMG_3	9	1	-	4.406998596793493	7.525833067481464	TCAATGACAATGG
chr9	81440249	81440250	chr9:81440250:C:T	rs12379919	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr9	81531725	81531726	chr9:81531726:C:T	rs111810401	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr9	81752266	81752267	chr9:81752267:T:C	rs75122168	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	81820200	81820201	chr9:81820201:G:A	rs72735447	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr9	82718153	82718154	chr9:82718154:C:T	rs583597	C	T	C	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr9	82818656	82818657	chr9:82818657:C:G	rs10746691	C	G	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr9	83247903	83247904	chr9:83247904:G:A	rs78846594	G	A	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	83469622	83469623	chr9:83469623:C:T	rs17086295	C	T	C	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	83470900	83470901	chr9:83470901:T:G	rs7034871	T	G	T	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	83630073	83630074	chr9:83630074:C:T	rs2780975	C	T	T	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr9	83639445	83639446	chr9:83639446:G:A	rs7866066	G	A	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	84141219	84141220	chr9:84141220:T:C	rs11140401	T	C	T	Sox1.mouse_HMG_3	14	0	-	0	0	.
chr9	84146865	84146866	chr9:84146866:T:C	rs1246264	T	C	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr9	84169831	84169832	chr9:84169832:A:T	rs871228	A	T	T	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr9	84278397	84278398	chr9:84278398:A:G	rs11140490	A	G	A	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr9	84285453	84285454	chr9:84285454:T:A	rs56350726	T	A	T	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	84554274	84554275	chr9:84554275:C:T	rs11140664	C	T	C	Sox1.mouse_HMG_3	1	1	+	4.49453077959296	-0.4637414515206648	TCACAGACATTGG
chr9	84860598	84860599	chr9:84860599:G:A	rs78934541	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr9	84860616	84860617	chr9:84860617:G:T	rs192838986	G	T	G	Sox1.mouse_HMG_3	6	1	+	7.5657966763711	7.477681458039314	TCAAATGCATTGT
chr9	85185593	85185594	chr9:85185594:T:C	rs60263235	T	C	C	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr9	85371608	85371609	chr9:85371609:A:G	rs10735571	A	G	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	85377862	85377863	chr9:85377863:A:G	chr9:85377863:A:G	A	G	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	85377873	85377874	chr9:85377874:A:C	rs2814734	A	C	C	Sox1.mouse_HMG_3	9	1	-	5.482434376254037	1.7143593391415044	TCACTTTGATTGA
chr9	86689589	86689590	chr9:86689590:A:G	rs2026341	A	G	A	Sox1.mouse_HMG_3	9	1	-	5.878148086829897	-1.0087614209706104	TCACATACATTGT
chr9	86967866	86967867	chr9:86967867:A:G	rs62563157	A	G	G	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr9	87086439	87086440	chr9:87086440:G:A	rs760569968	G	A	G	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr9	87179489	87179490	chr9:87179490:C:T	rs278664	C	T	T	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr9	87181144	87181145	chr9:87181145:C:G	rs4878045	C	G	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr9	87370334	87370335	chr9:87370335:T:G	rs7861579	T	G	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	87495909	87495910	chr9:87495910:T:G	rs1964911	T	G	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	87518484	87518485	chr9:87518485:T:C	rs10868613	T	C	C	Sox1.mouse_HMG_3	0	1	+	10.713930740897888	3.8617515988046054	TCAATCTCATTGA
chr9	87541930	87541931	chr9:87541931:C:T	rs1041326	C	T	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr9	87599906	87599907	chr9:87599907:T:C	rs75144902	T	C	T	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr9	87659953	87659954	chr9:87659954:G:A	rs3128471	G	A	a	Sox1.mouse_HMG_3	-1	0	+	0	0	.
chr9	88115232	88115233	chr9:88115233:T:C	rs620889	T	C	.	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	88118496	88118497	chr9:88118497:G:A	rs525585	G	A	.	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr9	88196266	88196267	chr9:88196267:T:C	rs2814828	T	C	T	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr9	88196288	88196289	chr9:88196289:G:T	rs2778028	G	T	G	Sox1.mouse_HMG_3	-6	0	-	0	0	.
chr9	88215668	88215669	chr9:88215669:T:C	rs2250871	T	C	T	Sox1.mouse_HMG_3	9	1	+	9.013522190067285	2.126612682266776	TCATTAACATTGA
chr9	88230860	88230861	chr9:88230861:C:A	rs73652529	C	A	C	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr9	88236687	88236688	chr9:88236688:G:C	rs17054000	G	C	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	88583970	88583971	chr9:88583971:C:G	rs9410665	C	G	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	88583980	88583981	chr9:88583981:A:G	rs28496878	A	G	A	Sox1.mouse_HMG_3	10	1	-	6.034486625391764	1.3992738295871499	AAAATACCATTGA
chr9	88661928	88661929	chr9:88661929:A:G	rs77485037	A	G	A	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr9	88808695	88808696	chr9:88808696:T:G	rs2653814	T	G	G	Sox1.mouse_HMG_3	0	1	-	9.291125599612874	5.264703053876232	ACAATGCCATTGT
chr9	88888054	88888055	chr9:88888055:A:G	rs1393570	A	G	A	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr9	88997663	88997664	chr9:88997664:T:A	rs72748922	T	A	T	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr9	89114097	89114098	chr9:89114098:T:C	rs73498185	T	C	T	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	89137699	89137700	chr9:89137700:T:C	rs112269322	T	C	T	Sox1.mouse_HMG_3	8	1	-	5.437442317530069	-1.471312461785153	TCACTGACATTCT
chr9	89154843	89154844	chr9:89154844:G:A	rs2039307	G	A	G	Sox1.mouse_HMG_3	1	1	-	5.206477831113791	0.248205600000164	TCTATTGCATTGC
chr9	89154847	89154848	chr9:89154848:A:G	rs1888642	A	G	A	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr9	89218427	89218428	chr9:89218428:G:A	rs7852045	G	A	G	Sox1.mouse_HMG_3	11	1	+	10.455753658097466	6.345913227111568	TCAATTACATCGA
chr9	89363675	89363676	chr9:89363676:C:T	rs76395868	C	T	C	Sox1.mouse_HMG_3	3	1	+	9.952717666773093	5.315855034052511	TCACTGCCATTGT
chr9	89414153	89414154	chr9:89414154:T:C	rs17529841	T	C	T	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	89457081	89457082	chr9:89457082:A:C	rs7034594	A	C	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	89490504	89490505	chr9:89490505:T:C	rs9695896	T	C	C	Sox1.mouse_HMG_3	0	1	-	5.823880418251601	1.7974578725149597	ACACTGACAGTGA
chr9	89494329	89494330	chr9:89494330:C:T	rs1039838296	C	T	C	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr9	89494330	89494331	chr9:89494331:G:A	rs142056280	G	A	G	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr9	89576469	89576470	chr9:89576470:G:A	rs187827108	G	A	G	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr9	89614190	89614191	chr9:89614191:A:G	rs955965	A	G	A	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	89647839	89647840	chr9:89647840:C:T	rs75030060	C	T	C	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr9	89701073	89701074	chr9:89701074:A:G	rs57205529	A	G	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	89735702	89735703	chr9:89735703:A:T	rs1046992296	A	T	A	Sox1.mouse_HMG_3	2	1	+	4.223560531469602	-2.6851942478456197	ACAATGGCAGTGG
chr9	89850652	89850653	chr9:89850653:T:C	rs984864038	T	C	C	Sox1.mouse_HMG_3	2	1	-	7.626239274300426	0.7174844949852057	TCAACTTCATTGA
chr9	89850665	89850666	chr9:89850666:C:T	rs964704234	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr9	89890317	89890318	chr9:89890318:T:C	rs914523227	T	C	T	Sox1.mouse_HMG_3	4	1	+	8.402436384986526	1.5023403633718786	ACAATAGCATTAA
chr9	90129582	90129583	chr9:90129583:G:A	rs17445269	G	A	G	Sox1.mouse_HMG_3	10	1	-	4.952067309701304	9.587280105505917	TCACTTCCATCGG
chr9	90220163	90220164	chr9:90220164:G:T	rs113246651	G	T	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr9	90331592	90331593	chr9:90331593:C:T	rs1777048	C	T	T	Sox1.mouse_HMG_3	3	1	+	5.9664938025139005	1.3296311697933183	TCCCTTCCATTGA
chr9	90640234	90640235	chr9:90640235:A:T	rs1331503	A	T	.	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	90643232	90643233	chr9:90643233:C:A	rs73505468	C	A	.	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	90699366	90699367	chr9:90699367:A:G	rs1173107	A	G	.	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	90744789	90744790	chr9:90744790:G:A	rs557070124	G	A	.	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	90777596	90777597	chr9:90777597:A:G	rs291007	A	G	.	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr9	90802897	90802898	chr9:90802898:G:T	rs369511427	G	T	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	90840371	90840372	chr9:90840372:C:T	rs140369985	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	90878549	90878550	chr9:90878550:G:A	rs12003597	G	A	G	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr9	90878589	90878590	chr9:90878590:C:A	rs12005209	C	A	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	91045213	91045214	chr9:91045214:A:G	rs10115589	A	G	A	Sox1.mouse_HMG_3	2	1	+	7.5158299849797885	0.6070752056645694	TCAATGACATTCC
chr9	91045225	91045226	chr9:91045226:G:A	rs117094759	G	A	G	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	91154573	91154574	chr9:91154574:G:A	rs11792794	G	A	A	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr9	91515736	91515737	chr9:91515737:G:A	rs7028882	G	A	A	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	91854815	91854816	chr9:91854816:T:A	rs7039406	T	A	T	Sox1.mouse_HMG_3	-20	0	+	0	0	.
chr9	91992980	91992981	chr9:91992981:A:C	rs7872437	A	C	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	92247933	92247934	chr9:92247934:T:C	rs4743869	T	C	C	Sox1.mouse_HMG_3	6	1	-	4.44669349794772	3.9701775582924976	TCATTAACATTCA
chr9	92499044	92499045	chr9:92499045:A:G	rs927865	A	G	G	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr9	92811401	92811402	chr9:92811402:A:G	rs1853429	A	G	a	Sox1.mouse_HMG_3	8	1	+	5.773792926861114	-1.1349618524541067	CCAATTCCATTGT
chr9	92876550	92876551	chr9:92876551:G:T	rs12338961	G	T	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	92878943	92878944	chr9:92878944:T:C	rs72741015	T	C	T	Sox1.mouse_HMG_3	2	1	-	6.784027373833981	-0.12472740548123662	TCAATTTTATTAA
chr9	93186878	93186879	chr9:93186879:G:A	rs7046200	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	93277157	93277158	chr9:93277158:A:T	rs72743435	A	T	A	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr9	93299423	93299424	chr9:93299424:G:T	rs72743442	G	T	G	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr9	93718854	93718855	chr9:93718855:G:A	rs117037229	G	A	G	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr9	93803005	93803006	chr9:93803006:C:T	rs10821226	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	94098316	94098317	chr9:94098317:A:T	rs73518294	A	T	.	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	94559652	94559653	chr9:94559653:C:T	rs7039582	C	T	C	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr9	94783133	94783134	chr9:94783134:G:A	rs368825470	G	A	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	94852358	94852359	chr9:94852359:C:T	rs4744386	C	T	C	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr9	94865484	94865485	chr9:94865485:A:G	rs1867102	A	G	A	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr9	94883208	94883209	chr9:94883209:G:T	rs56319051	G	T	T	Sox1.mouse_HMG_3	1	1	-	8.445581477556368	1.5428286901970234	ACAATTCCAGTGA
chr9	95003105	95003106	chr9:95003106:C:T	rs117058004	C	T	C	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	95215855	95215856	chr9:95215856:T:A	rs4647457	T	A	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr9	95739381	95739382	chr9:95739382:T:C	rs79439814	T	C	C	Sox1.mouse_HMG_3	3	1	-	5.061853696059433	-1.7391734658575746	TCAATATCATGGG
chr9	95739382	95739383	chr9:95739383:T:C	rs77250948	T	C	C	Sox1.mouse_HMG_3	2	1	-	5.061853696059433	-1.8469010832557886	TCAATATCATGGG
chr9	95874651	95874652	chr9:95874652:A:G	rs948809689	A	G	A	Sox1.mouse_HMG_3	15	0	-	0	0	.
chr9	96065168	96065169	chr9:96065169:C:T	rs4743505	C	T	T	Sox1.mouse_HMG_3	3	1	+	6.7634753149873585	2.126612682266776	TCACTAACAATGA
chr9	96226218	96226219	chr9:96226219:C:T	rs7875483	C	T	C	Sox1.mouse_HMG_3	3	1	+	4.4960153346923715	-0.1408472980282096	TCACTCCCATTCA
chr9	96777243	96777244	chr9:96777244:A:G	rs3780549	A	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr9	96777255	96777256	chr9:96777256:A:G	rs77764105	A	G	A	Sox1.mouse_HMG_3	5	1	+	6.037099826925097	4.804427055858008	TCACAATCATTGT
chr9	97345350	97345351	chr9:97345351:A:G	rs7034449	A	G	A	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr9	97345352	97345353	chr9:97345353:C:T	rs10435867	C	T	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	98118669	98118670	chr9:98118670:C:T	chr9:98118670:C:T	C	T	C	Sox1.mouse_HMG_3	5	1	-	6.252433636164394	7.485106407231481	ACACTGCCATTGG
chr9	98165264	98165265	chr9:98165265:T:C	rs7032570	T	C	T	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr9	98273338	98273339	chr9:98273339:C:A	rs62574300	C	A	C	Sox1.mouse_HMG_3	11	1	-	3.8291809249923436	-3.0551214726150158	TCAAGGTCATTGG
chr9	98506237	98506238	chr9:98506238:T:C	rs871797	T	C	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	98886755	98886756	chr9:98886756:C:T	rs117757615	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	98886792	98886793	chr9:98886793:G:A	rs145762742	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr9	98909526	98909527	chr9:98909527:G:T	rs142992897	G	T	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	98920289	98920290	chr9:98920290:T:G	rs13288865	T	G	T	Sox1.mouse_HMG_3	0	1	+	7.711697726887515	0.8595185847942297	TAAATTGCATTGA
chr9	99056433	99056434	chr9:99056434:T:C	rs11788317	T	C	C	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr9	99212057	99212058	chr9:99212058:T:G	chr9:99212058:T:G	T	G	T	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr9	99359506	99359507	chr9:99359507:A:G	chr9:99359507:A:G	A	G	A	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	99378443	99378444	chr9:99378444:C:T	rs13297598	C	T	C	Sox1.mouse_HMG_3	7	1	+	7.780849419000196	4.148381927905003	TCATTGACATTGA
chr9	99414417	99414418	chr9:99414418:G:C	rs7042668	G	C	G	Sox1.mouse_HMG_3	7	1	-	5.753112431914902	-1.1266239585497093	TCACTTTCATTAC
chr9	99421914	99421915	chr9:99421915:G:A	rs10988820	G	A	G	Sox1.mouse_HMG_3	13	0	-	0	0	.
chr9	99472074	99472075	chr9:99472075:A:G	rs602522	A	G	A	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr9	99869952	99869953	chr9:99869953:T:C	rs2416878	T	C	T	Sox1.mouse_HMG_3	4	1	+	6.766082425180505	-0.134013596434142	TCACTAACATTTA
chr9	99922760	99922761	chr9:99922761:G:A	rs10121880	G	A	A	Sox1.mouse_HMG_3	-7	0	-	0	0	.
chr9	100282016	100282017	chr9:100282017:G:T	rs7866700	G	T	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr9	100284888	100284889	chr9:100284889:T:C	rs2065997	T	C	C	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	100325080	100325081	chr9:100325081:T:A	rs4237195	T	A	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr9	100395232	100395233	chr9:100395233:C:A	rs12000794	C	A	C	Sox1.mouse_HMG_3	5	1	-	8.598083671731706	9.107173544716586	TCACTGCCAGTGA
chr9	100411556	100411557	chr9:100411557:T:C	rs10819773	T	C	C	Sox1.mouse_HMG_3	9	1	+	5.367408376929049	-1.5195011308714583	TCATTGACATTGT
chr9	101338600	101338601	chr9:101338601:A:G	rs4742811	A	G	G	Sox1.mouse_HMG_3	-9	0	-	0	0	.
chr9	102010588	102010589	chr9:102010589:C:G	rs11562348	C	G	C	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr9	102079900	102079901	chr9:102079901:G:A	rs11792140	G	A	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	102729014	102729015	chr9:102729015:T:G	rs10118172	T	G	G	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr9	103294203	103294204	chr9:103294204:G:A	rs115755985	G	A	G	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	103294243	103294244	chr9:103294244:C:T	rs79523244	C	T	C	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	103331702	103331703	chr9:103331703:C:T	rs62577264	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr9	103331715	103331716	chr9:103331716:C:T	rs385114	C	T	T	Sox1.mouse_HMG_3	17	0	-	0	0	.
chr9	103707364	103707365	chr9:103707365:A:G	rs113313647	A	G	A	Sox1.mouse_HMG_3	21	0	+	0	0	.
chr9	103838097	103838098	chr9:103838098:T:C	rs73662948	T	C	T	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr9	104091222	104091223	chr9:104091223:G:A	rs1999153	G	A	A	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	104093572	104093573	chr9:104093573:G:C	rs73663494	G	C	G	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	104231056	104231057	chr9:104231057:A:G	rs1857983	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	104777070	104777071	chr9:104777071:T:C	rs2482430	T	C	C	Sox1.mouse_HMG_3	12	1	+	5.565526139566336	5.479749277819634	ATAATACCATTGT
chr9	104832004	104832005	chr9:104832005:T:C	rs116581454	T	C	T	Sox1.mouse_HMG_3	8	1	-	3.943622689774982	-2.9651320895402384	TAAATTGCAGTGA
chr9	104863650	104863651	chr9:104863651:A:G	rs4149285	A	G	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	104882269	104882270	chr9:104882270:C:T	rs79252500	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr9	105046737	105046738	chr9:105046738:T:G	rs448085	T	G	G	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	105069753	105069754	chr9:105069754:C:T	rs182725289	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	105102875	105102876	chr9:105102876:A:G	rs7029430	A	G	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr9	105169578	105169579	chr9:105169579:A:C	rs73506426	A	C	A	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr9	105183199	105183200	chr9:105183200:G:A	rs58525889	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	105187892	105187893	chr9:105187893:A:G	rs7866760	A	G	G	Sox1.mouse_HMG_3	2	1	-	4.242412139654796	4.242412139654796	TCTCTAACATTGC
chr9	105259338	105259339	chr9:105259339:C:T	rs116225209	C	T	C	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	105483802	105483803	chr9:105483803:C:G	rs2812311	C	G	C	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr9	105652163	105652164	chr9:105652164:G:A	rs551015	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	105881650	105881651	chr9:105881651:A:T	rs188182234	A	T	A	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	106480113	106480114	chr9:106480114:A:C	rs117220866	A	C	A	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	106643655	106643656	chr9:106643656:G:C	rs57849724	G	C	G	Sox1.mouse_HMG_3	17	0	+	0	0	.
chr9	106732216	106732217	chr9:106732217:T:C	rs2498857	T	C	T	Sox1.mouse_HMG_3	-3	0	+	0	0	.
chr9	107046977	107046978	chr9:107046978:G:A	rs6477555	G	A	A	Sox1.mouse_HMG_3	11	1	+	6.088696734013	1.9788563030271016	ACAACAACATTGA
chr9	107246457	107246458	chr9:107246458:G:A	rs36116755	G	A	G	Sox1.mouse_HMG_3	7	1	-	5.773792926861114	2.141325435765921	CCAATTCCATTGT
chr9	107270216	107270217	chr9:107270217:G:T	rs12345455	G	T	T	Sox1.mouse_HMG_3	11	1	+	5.3755077597648775	-1.5087946378424815	ACAATATCATCGT
chr9	107293101	107293102	chr9:107293102:G:A	rs7035341	G	A	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr9	107392717	107392718	chr9:107392718:C:A	rs145477526	C	A	C	Sox1.mouse_HMG_3	6	1	-	5.141310156690643	5.053194938358859	TCAATAGCCTTGG
chr9	107657344	107657345	chr9:107657345:A:T	rs10978974	A	T	A	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr9	107708350	107708351	chr9:107708351:G:A	rs10979021	G	A	G	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr9	107953422	107953423	chr9:107953423:C:T	rs10979128	C	T	C	Sox1.mouse_HMG_3	7	1	+	6.018047145390437	2.3855796542952445	TCACTTACGTTGA
chr9	108193535	108193536	chr9:108193536:T:C	rs34979687	T	C	T	Sox1.mouse_HMG_3	-16	0	+	0	0	.
chr9	108193542	108193543	chr9:108193543:C:T	rs76011778	C	T	C	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr9	108693184	108693185	chr9:108693185:G:A	rs72753987	G	A	G	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr9	108762540	108762541	chr9:108762541:C:T	rs56052940	C	T	C	Sox1.mouse_HMG_3	11	1	-	4.350034272916211	0.24019384193031357	TCACTAACAATGT
chr9	109278436	109278437	chr9:109278437:C:T	rs4978791	C	T	C	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr9	109424051	109424052	chr9:109424052:A:T	rs10816809	A	T	A	Sox1.mouse_HMG_3	0	1	+	5.772327075375063	8.598083671731706	ACACTGCCAGTGA
chr9	109470322	109470323	chr9:109470323:T:G	rs7020624	T	G	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr9	109535898	109535899	chr9:109535899:A:C	rs7870491	A	C	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	109574485	109574486	chr9:109574486:A:G	chr9:109574486:A:G	A	G	A	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr9	109574513	109574514	chr9:109574514:T:C	rs145866260	T	C	T	Sox1.mouse_HMG_3	9	1	+	6.0819711197558615	-0.8049383880446472	ACAATTCTATTGC
chr9	109604354	109604355	chr9:109604355:G:A	rs4978839	G	A	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	109774148	109774149	chr9:109774149:G:A	rs7022209	G	A	A	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr9	109880400	109880401	chr9:109880401:G:A	rs560815584	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	109972164	109972165	chr9:109972165:T:C	rs4978864	T	C	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	110183231	110183232	chr9:110183232:C:T	rs10816935	C	T	C	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr9	110191708	110191709	chr9:110191709:C:T	rs76360042	C	T	C	Sox1.mouse_HMG_3	7	1	+	5.437273700753639	1.8048062096584467	ACAATGCCAGTGC
chr9	110370359	110370360	chr9:110370360:C:A	rs10980348	C	A	.	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	110486388	110486389	chr9:110486389:C:G	rs10817031	C	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr9	110526642	110526643	chr9:110526643:C:T	rs143660930	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	110875184	110875185	chr9:110875185:C:G	rs1804787	C	G	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	110951678	110951679	chr9:110951679:T:C	rs2418122	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr9	111153248	111153249	chr9:111153249:T:C	rs10980799	T	C	T	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr9	111161442	111161443	chr9:111161443:A:G	rs12350763	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr9	111475319	111475320	chr9:111475320:C:T	rs12238412	C	T	C	Sox1.mouse_HMG_3	9	1	-	6.18464262966056	3.0658081589725854	TCACTGCCAGTGT
chr9	111622774	111622775	chr9:111622775:G:A	rs10759503	G	A	g	Sox1.mouse_HMG_3	19	0	-	0	0	.
chr9	111731541	111731542	chr9:111731542:T:A	rs12352855	T	A	T	Sox1.mouse_HMG_3	-4	0	+	0	0	.
chr9	111825618	111825619	chr9:111825619:G:A	rs73656298	G	A	G	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	111898023	111898024	chr9:111898024:G:T	rs139622009	G	T	G	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	111943265	111943266	chr9:111943266:C:G	rs7046812	C	G	G	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr9	111995065	111995066	chr9:111995066:A:C	rs2805484	A	C	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	112041225	112041226	chr9:112041226:T:C	rs745878113	T	C	T	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr9	112047821	112047822	chr9:112047822:A:G	rs10981228	A	G	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr9	112194266	112194267	chr9:112194267:A:G	rs10125519	A	G	A	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr9	112437544	112437545	chr9:112437545:G:A	rs7866567	G	A	G	Sox1.mouse_HMG_3	-3	0	-	0	0	.
chr9	112489303	112489304	chr9:112489304:T:G	rs7870207	T	G	T	Sox1.mouse_HMG_3	8	1	-	6.7119219721108205	-0.19683280720440055	TCACTACCACTGA
chr9	112546158	112546159	chr9:112546159:C:T	rs7847821	C	T	C	Sox1.mouse_HMG_3	28	0	-	0	0	.
chr9	112862391	112862392	chr9:112862392:G:A	rs543165809	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr9	112903241	112903242	chr9:112903242:T:C	rs75990894	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.3010880402328215	-2.6076667390823984	TCACTACCATTTT
chr9	113153974	113153975	chr9:113153975:A:G	rs7856379	A	G	G	Sox1.mouse_HMG_3	4	1	-	9.220717718515115	2.3206216969004663	ACAATAACAGTGA
chr9	113187860	113187861	chr9:113187861:C:T	rs73655816	C	T	.	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr9	113340886	113340887	chr9:113340887:T:C	rs12235345	T	C	T	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	113340899	113340900	chr9:113340900:C:G	rs12350131	C	G	G	Sox1.mouse_HMG_3	11	1	-	5.45740392952902	0.8905752374094562	TCCCTGCCATTGA
chr9	113356671	113356672	chr9:113356672:C:T	rs4979237	C	T	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	113357018	113357019	chr9:113357019:T:C	rs7859965	T	C	T	Sox1.mouse_HMG_3	2	1	-	5.246226120405199	-1.6625286589100199	TCAATACTATTTA
chr9	113361636	113361637	chr9:113361637:A:G	rs7037201	A	G	G	Sox1.mouse_HMG_3	23	0	-	0	0	.
chr9	113512198	113512199	chr9:113512199:G:A	rs114133679	G	A	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr9	113525983	113525984	chr9:113525984:T:C	rs7852118	T	C	C	Sox1.mouse_HMG_3	12	1	-	4.973573420368034	1.6856049440448309	ACACTGCCATTCA
chr9	113536619	113536620	chr9:113536620:C:T	rs7032311	C	T	C	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr9	113536636	113536637	chr9:113536637:A:G	rs112189420	A	G	A	Sox1.mouse_HMG_3	3	1	+	3.8423674388064835	-2.9586597231105225	TCAATGTCACTGG
chr9	113615263	113615264	chr9:113615264:T:C	rs79222753	T	C	T	Sox1.mouse_HMG_3	8	1	-	4.480226719904298	-2.428528059410922	ACACAGGCATTGA
chr9	113682374	113682375	chr9:113682375:C:T	rs79464171	C	T	C	Sox1.mouse_HMG_3	3	1	+	6.7119219721108205	2.075059339390238	TCACTACCACTGA
chr9	113893119	113893120	chr9:113893120:G:A	rs75293905	G	A	G	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr9	114026973	114026974	chr9:114026974:A:T	rs77198048	A	T	A	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr9	114130215	114130216	chr9:114130216:G:A	rs57495684	G	A	A	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr9	114225988	114225989	chr9:114225989:C:T	rs7028958	C	T	C	Sox1.mouse_HMG_3	15	0	+	0	0	.
chr9	114278178	114278179	chr9:114278179:G:A	rs112446757	G	A	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr9	114326058	114326059	chr9:114326059:C:T	rs372253280	C	T	C	Sox1.mouse_HMG_3	6	1	-	5.0568937144581945	5.533409654113418	TCACTGGCATTTA
chr9	114583081	114583082	chr9:114583082:T:A	rs7019057	T	A	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr9	114606493	114606494	chr9:114606494:C:T	rs79107791	C	T	C	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	114690628	114690629	chr9:114690629:C:T	rs146295310	C	T	C	Sox1.mouse_HMG_3	29	0	+	0	0	.
chr9	115024854	115024855	chr9:115024855:A:T	rs115276378	A	T	A	Sox1.mouse_HMG_3	2	1	+	6.462750943372898	-0.4460038359423224	TCAGTACCATTGC
chr9	115098179	115098180	chr9:115098180:G:A	rs10982530	G	A	G	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	115165008	115165009	chr9:115165009:A:G	rs76128178	A	G	A	Sox1.mouse_HMG_3	-11	0	+	0	0	.
chr9	115209875	115209876	chr9:115209876:C:T	rs1335357	C	T	T	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr9	115264160	115264161	chr9:115264161:G:A	rs76062121	G	A	G	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr9	115357085	115357086	chr9:115357086:C:T	rs10982705	C	T	T	Sox1.mouse_HMG_3	12	1	+	5.604598179865155	5.690375041611858	ACAATTCCATTAC
chr9	115394373	115394374	chr9:115394374:G:C	chr9:115394374:G:C	G	C	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	115495503	115495504	chr9:115495504:A:C	rs76117858	A	C	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr9	115549028	115549029	chr9:115549029:T:C	rs10982790	T	C	T	Sox1.mouse_HMG_3	-19	0	+	0	0	.
chr9	115549030	115549031	chr9:115549031:A:G	rs12342529	A	G	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr9	115549055	115549056	chr9:115549056:A:G	rs10982791	A	G	A	Sox1.mouse_HMG_3	8	1	+	4.95674265955952	-1.9520121197556999	ACACAGACATTGA
chr9	115553361	115553362	chr9:115553362:C:T	rs12005078	C	T	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	115591817	115591818	chr9:115591818:A:G	rs1024028577	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr9	115591835	115591836	chr9:115591836:T:C	rs73528142	T	C	T	Sox1.mouse_HMG_3	10	1	+	5.508957272405556	0.8737444766009428	TCACTGACTTTGA
chr9	115596633	115596634	chr9:115596634:G:A	rs7467290	G	A	G	Sox1.mouse_HMG_3	-19	0	-	0	0	.
chr9	115924255	115924256	chr9:115924256:C:T	rs13297992	C	T	C	Sox1.mouse_HMG_3	-17	0	-	0	0	.
chr9	116181959	116181960	chr9:116181960:C:T	rs1160248	C	T	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	116267341	116267342	chr9:116267342:T:C	rs75689303	T	C	T	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	116404940	116404941	chr9:116404941:C:T	rs1858015	C	T	T	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	116525671	116525672	chr9:116525672:T:C	rs56123339	T	C	T	Sox1.mouse_HMG_3	4	1	+	8.281989898893329	1.3818938772786837	TCAATAGCAGTGG
chr9	116901511	116901512	chr9:116901512:G:A	rs7030357	G	A	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr9	116952150	116952151	chr9:116952151:G:A	rs11789879	G	A	G	Sox1.mouse_HMG_3	-1	0	-	0	0	.
chr9	117095180	117095181	chr9:117095181:C:A	rs11791192	C	A	C	Sox1.mouse_HMG_3	7	1	+	5.041100090450907	-0.24940109489712392	TCACTGGCATGGA
chr9	117648927	117648928	chr9:117648928:T:C	rs10126004	T	C	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr9	117648963	117648964	chr9:117648964:A:G	rs115116910	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	117707869	117707870	chr9:117707870:A:G	rs1927910	A	G	G	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	118363467	118363468	chr9:118363468:T:C	rs10429475	T	C	C	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr9	118529465	118529466	chr9:118529466:G:A	rs7037164	G	A	A	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr9	119526827	119526828	chr9:119526828:T:C	rs1009471	T	C	C	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	119651266	119651267	chr9:119651267:T:C	rs10818353	T	C	C	Sox1.mouse_HMG_3	3	1	-	7.621568458725443	0.820541296808438	TCCATGCCATTGA
chr9	119758839	119758840	chr9:119758840:C:T	rs73659011	C	T	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr9	119998456	119998457	chr9:119998457:C:T	rs10119706	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	120384947	120384948	chr9:120384948:A:G	rs4836818	A	G	A	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	120650531	120650532	chr9:120650532:A:T	rs144177743	A	T	A	Sox1.mouse_HMG_3	3	1	+	4.621689284938096	-2.1793378769789093	ACAAAGACATTGC
chr9	120704049	120704050	chr9:120704050:G:C	rs7044226	G	C	C	Sox1.mouse_HMG_3	1	1	-	5.142814994489864	-1.7599377928694788	TCAATTTCATTTC
chr9	120891710	120891711	chr9:120891711:A:G	rs540811297	A	G	A	Sox1.mouse_HMG_3	2	1	+	8.53700625041206	1.6282514710968414	TCAGTAGCATTGA
chr9	121330972	121330973	chr9:121330973:C:T	rs118019758	C	T	C	Sox1.mouse_HMG_3	2	1	-	4.242412139654796	11.151166918970015	TCGCTAACATTGC
chr9	121503498	121503499	chr9:121503499:A:C	rs184225591	A	C	A	Sox1.mouse_HMG_3	8	1	+	5.2454471529547515	-1.6633076263604694	TCAGTAACAGTGA
chr9	121915086	121915087	chr9:121915087:A:G	rs1018997565	A	G	A	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr9	121948023	121948024	chr9:121948024:T:C	rs10739603	T	C	T	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr9	122109860	122109861	chr9:122109861:T:C	rs944215	T	C	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr9	122344118	122344119	chr9:122344119:G:A	rs1484263638	G	A	G	Sox1.mouse_HMG_3	-8	0	+	0	0	.
chr9	122567904	122567905	chr9:122567905:A:C	rs10985702	A	C	A	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr9	122626046	122626047	chr9:122626047:A:G	rs10491516	A	G	A	Sox1.mouse_HMG_3	14	0	+	0	0	.
chr9	123404450	123404451	chr9:123404451:C:T	rs71511573	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr9	123525122	123525123	chr9:123525123:G:A	rs117436484	G	A	g	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	123525124	123525125	chr9:123525125:G:A	rs61655407	G	A	G	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	123525136	123525137	chr9:123525137:A:G	rs2772213	A	G	A	Sox1.mouse_HMG_3	10	1	-	6.268769905866755	1.6335571100621409	TCACTTGCAGTGT
chr9	123757788	123757789	chr9:123757789:T:C	rs9785285	T	C	C	Sox1.mouse_HMG_3	-8	0	-	0	0	.
chr9	123796257	123796258	chr9:123796258:T:C	rs1752164	T	C	C	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr9	124080937	124080938	chr9:124080938:C:T	rs10760316	C	T	T	Sox1.mouse_HMG_3	7	1	+	6.607955640898737	2.9754881498035446	TCACTTCCAGTGC
chr9	124259353	124259354	chr9:124259354:C:T	rs577664074	C	T	C	Sox1.mouse_HMG_3	-18	0	+	0	0	.
chr9	124259402	124259403	chr9:124259403:T:A	rs560174925	T	A	T	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr9	124481665	124481666	chr9:124481666:C:T	rs537214960	C	T	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr9	124660831	124660832	chr9:124660832:T:C	rs79023332	T	C	T	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	126001633	126001634	chr9:126001634:T:C	rs139310645	T	C	T	Sox1.mouse_HMG_3	25	0	+	0	0	.
chr9	126044105	126044106	chr9:126044106:A:C	rs10819104	A	C	A	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	126300075	126300076	chr9:126300076:T:C	rs4837053	T	C	T	Sox1.mouse_HMG_3	3	1	-	5.515406818325419	-1.2856203435915874	ACAATATCTTTGA
chr9	126307221	126307222	chr9:126307222:G:A	rs741027	G	A	A	Sox1.mouse_HMG_3	24	0	-	0	0	.
chr9	126307249	126307250	chr9:126307250:C:T	rs74604600	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	126320655	126320656	chr9:126320656:C:T	rs12552388	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr9	126339109	126339110	chr9:126339110:C:G	rs531599	C	G	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr9	126701333	126701334	chr9:126701334:C:T	rs3906146	C	T	T	Sox1.mouse_HMG_3	32	0	+	0	0	.
chr9	126789186	126789187	chr9:126789187:A:G	rs2417038	A	G	G	Sox1.mouse_HMG_3	10	1	-	5.3525907724745	0.7173779766698849	TTACTACCATTGG
chr9	126999851	126999852	chr9:126999852:A:T	rs10760471	A	T	T	Sox1.mouse_HMG_3	-2	0	-	0	0	.
chr9	127050532	127050533	chr9:127050533:A:G	rs12551501	A	G	A	Sox1.mouse_HMG_3	-5	0	-	0	0	.
chr9	127165191	127165192	chr9:127165192:A:T	rs78737030	A	T	A	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr9	127295586	127295587	chr9:127295587:A:G	rs10819273	A	G	A	Sox1.mouse_HMG_3	-2	0	+	0	0	.
chr9	127495278	127495279	chr9:127495279:T:C	rs374296150	T	C	T	Sox1.mouse_HMG_3	-10	0	+	0	0	.
chr9	127556196	127556197	chr9:127556197:C:T	rs76295919	C	T	C	Sox1.mouse_HMG_3	22	0	+	0	0	.
chr9	127769984	127769985	chr9:127769985:T:C	rs117929733	T	C	T	Sox1.mouse_HMG_3	10	1	+	6.032140435485223	1.3969276396806083	ACAATTCCAGTGT
chr9	127827573	127827574	chr9:127827574:C:T	rs10760505	C	T	C	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	127897559	127897560	chr9:127897560:A:C	chr9:127897560:A:C	A	C	A	Sox1.mouse_HMG_3	2	1	+	4.031254979612143	-2.877499799703077	TCACTGCCAGTCA
chr9	127904057	127904058	chr9:127904058:T:C	rs12004868	T	C	T	Sox1.mouse_HMG_3	4	1	+	7.936633883885857	1.036537862271211	TCAATAACAGTAA
chr9	128067549	128067550	chr9:128067550:G:A	chr9:128067550:G:A	G	A	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr9	128102022	128102023	chr9:128102023:G:A	rs118142698	G	A	G	Sox1.mouse_HMG_3	16	0	+	0	0	.
chr9	128191231	128191232	chr9:128191232:C:T	rs67525828	C	T	C	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr9	128191241	128191242	chr9:128191242:G:A	rs191005506	G	A	G	Sox1.mouse_HMG_3	-5	0	+	0	0	.
chr9	128191273	128191274	chr9:128191274:G:T	rs73607702	G	T	G	Sox1.mouse_HMG_3	27	0	+	0	0	.
chr9	129425613	129425614	chr9:129425614:T:C	rs77994433	T	C	T	Sox1.mouse_HMG_3	3	1	-	4.3625832945977905	-2.4384438673192146	TCAATTCCTGTGA
chr9	129425620	129425621	chr9:129425621:C:T	rs74546991	C	T	C	Sox1.mouse_HMG_3	-4	0	-	0	0	.
chr9	129438496	129438497	chr9:129438497:C:A	rs72766043	C	A	C	Sox1.mouse_HMG_3	-15	0	-	0	0	.
chr9	129533340	129533341	chr9:129533341:A:G	rs1613345	A	G	g	Sox1.mouse_HMG_3	20	0	-	0	0	.
chr9	129703527	129703528	chr9:129703528:T:G	rs4836668	T	G	G	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr9	129806416	129806417	chr9:129806417:T:G	rs188617858	T	G	T	Sox1.mouse_HMG_3	31	0	-	0	0	.
chr9	129892320	129892321	chr9:129892321:A:G	rs1226029141	A	G	A	Sox1.mouse_HMG_3	-14	0	-	0	0	.
chr9	129910601	129910602	chr9:129910602:G:C	rs997218491	G	C	G	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	129934937	129934938	chr9:129934938:A:G	rs376800546	A	G	A	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	129944884	129944885	chr9:129944885:T:C	rs7870884	T	C	T	Sox1.mouse_HMG_3	9	1	+	8.127481433687231	1.2405719258867232	TTACTATCATTGA
chr9	130267598	130267599	chr9:130267599:C:A	rs10819627	C	A	C	Sox1.mouse_HMG_3	6	1	+	6.328181077947361	6.379734420823899	ACAATACCATTAC
chr9	130276441	130276442	chr9:130276442:A:G	rs9657643	A	G	a	Sox1.mouse_HMG_3	22	0	-	0	0	.
chr9	130492231	130492232	chr9:130492232:T:G	rs7040689	T	G	T	Sox1.mouse_HMG_3	-12	0	-	0	0	.
chr9	130738689	130738690	chr9:130738690:T:C	rs2583844	T	C	T	Sox1.mouse_HMG_3	13	0	+	0	0	.
chr9	131256816	131256817	chr9:131256817:C:T	rs1213752525	C	T	c	Sox1.mouse_HMG_3	-20	0	-	0	0	.
chr9	131518374	131518375	chr9:131518375:C:T	rs113628769	C	T	C	Sox1.mouse_HMG_3	20	0	+	0	0	.
chr9	131676645	131676646	chr9:131676646:T:C	rs2076	T	C	C	Sox1.mouse_HMG_3	6	1	+	3.68643973936836	4.199517554478831	TCACTATCATAGC
chr9	131708350	131708351	chr9:131708351:C:T	rs143771295	C	T	C	Sox1.mouse_HMG_3	-12	0	+	0	0	.
chr9	131759178	131759179	chr9:131759179:A:C	rs2987410	A	C	C	Sox1.mouse_HMG_3	-13	0	-	0	0	.
chr9	131916532	131916533	chr9:131916533:G:C	rs12555726	G	C	G	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr9	132137068	132137069	chr9:132137069:A:G	rs117211616	A	G	A	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	132147494	132147495	chr9:132147495:C:A	rs75872019	C	A	C	Sox1.mouse_HMG_3	6	1	-	4.806765412443092	4.718650194111307	TCACAGGCATTGC
chr9	132250479	132250480	chr9:132250480:C:G	rs144674862	C	G	C	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr9	132375085	132375086	chr9:132375086:A:G	rs7030233	A	G	A	Sox1.mouse_HMG_3	16	0	-	0	0	.
chr9	132382618	132382619	chr9:132382619:C:T	rs117146331	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr9	132579614	132579615	chr9:132579615:G:C	rs431195	G	C	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr9	132579738	132579739	chr9:132579739:T:G	rs10122079	T	G	T	Sox1.mouse_HMG_3	18	0	+	0	0	.
chr9	132750003	132750004	chr9:132750004:T:C	rs35337589	T	C	C	Sox1.mouse_HMG_3	-17	0	+	0	0	.
chr9	132855936	132855937	chr9:132855937:C:T	rs117201409	C	T	C	Sox1.mouse_HMG_3	30	0	-	0	0	.
chr9	132857196	132857197	chr9:132857197:G:C	rs73549201	G	C	G	Sox1.mouse_HMG_3	23	0	+	0	0	.
chr9	133006021	133006022	chr9:133006022:C:T	rs74311587	C	T	C	Sox1.mouse_HMG_3	10	1	+	5.2559097043058465	9.891122500110459	TCAAATTCATCGA
chr9	133018602	133018603	chr9:133018603:C:T	rs3011286	C	T	T	Sox1.mouse_HMG_3	-6	0	+	0	0	.
chr9	133042979	133042980	chr9:133042980:C:T	rs118146517	C	T	C	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr9	133252568	133252569	chr9:133252569:A:C	rs34039247	A	C	a	Sox1.mouse_HMG_3	28	0	+	0	0	.
chr9	133259145	133259146	chr9:133259146:T:A	rs8176710	T	A	t	Sox1.mouse_HMG_3	-9	0	+	0	0	.
chr9	133372522	133372523	chr9:133372523:G:C	rs3758348	G	C	G	Sox1.mouse_HMG_3	21	0	-	0	0	.
chr9	133437562	133437563	chr9:133437563:T:C	rs3780809	T	C	T	Sox1.mouse_HMG_3	-7	0	+	0	0	.
chr9	133706898	133706899	chr9:133706899:G:A	rs4979632	G	A	G	Sox1.mouse_HMG_3	-13	0	+	0	0	.
chr9	133765628	133765629	chr9:133765629:C:T	rs591866	C	T	T	Sox1.mouse_HMG_3	-11	0	-	0	0	.
chr9	133855860	133855861	chr9:133855861:G:A	rs116993683	G	A	G	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	134037773	134037774	chr9:134037774:T:C	rs112892449	T	C	T	Sox1.mouse_HMG_3	19	0	+	0	0	.
chr9	134349005	134349006	chr9:134349006:G:C	rs180886878	G	C	G	Sox1.mouse_HMG_3	-14	0	+	0	0	.
chr9	134536808	134536809	chr9:134536809:C:T	rs74542847	C	T	C	Sox1.mouse_HMG_3	26	0	-	0	0	.
chr9	134536809	134536810	chr9:134536810:G:A	rs7874918	G	A	A	Sox1.mouse_HMG_3	25	0	-	0	0	.
chr9	134697517	134697518	chr9:134697518:C:T	rs10858271	C	T	C	Sox1.mouse_HMG_3	32	0	-	0	0	.
chr9	134697520	134697521	chr9:134697521:G:C	rs73665737	G	C	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	135010460	135010461	chr9:135010461:A:G	rs144422751	A	G	a	Sox1.mouse_HMG_3	24	0	+	0	0	.
chr9	135326591	135326592	chr9:135326592:C:T	rs72764604	C	T	c	Sox1.mouse_HMG_3	-15	0	+	0	0	.
chr9	135377044	135377045	chr9:135377045:A:G	rs10745404	A	G	G	Sox1.mouse_HMG_3	30	0	+	0	0	.
chr9	135415606	135415607	chr9:135415607:T:C	rs2921318	T	C	T	Sox1.mouse_HMG_3	18	0	-	0	0	.
chr9	135485586	135485587	chr9:135485587:G:A	rs3827827	G	A	G	Sox1.mouse_HMG_3	29	0	-	0	0	.
chr9	135974989	135974990	chr9:135974990:C:T	rs11789650	C	T	C	Sox1.mouse_HMG_3	31	0	+	0	0	.
chr9	136922557	136922558	chr9:136922558:G:A	rs10283820	G	A	G	Sox1.mouse_HMG_3	-16	0	-	0	0	.
chr9	137277706	137277707	chr9:137277707:C:T	rs145345034	C	T	C	Sox1.mouse_HMG_3	26	0	+	0	0	.
chr9	137683303	137683304	chr9:137683304:A:G	rs72766909	A	G	A	Sox1.mouse_HMG_3	-7	0	+	0	0	.