chr1	943403	943404	chr1:943404:C:G	rs142929357	C	G	c	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	943428	943429	chr1:943429:C:T	rs191952374	C	T	c	Sox1.mouse_HMG_2	14	1	+	1.798739313336315	2.673351656059051	CTGGCTGGCAGTCAC
chr1	1107546	1107547	chr1:1107547:G:T	rs4970354	G	T	g	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	1107582	1107583	chr1:1107583:C:T	rs140069056	C	T	c	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	1189438	1189439	chr1:1189439:C:T	rs6694487	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	1687296	1687297	chr1:1687297:C:T	chr1:1687297:C:T	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	1876939	1876940	chr1:1876940:C:A	rs76829720	C	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	1887205	1887206	chr1:1887206:T:G	rs57222601	T	G	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	1951919	1951920	chr1:1951920:A:G	rs2490562	A	G	G	Sox1.mouse_HMG_2	9	1	+	10.32889208851012	3.4201373091948977	GAGAATACCATTCAG
chr1	1994647	1994648	chr1:1994648:T:C	rs6661597	T	C	C	Sox1.mouse_HMG_2	10	1	+	2.2770064941740897	-4.570935084106192	GTGAATTCCATGCGG
chr1	1994662	1994663	chr1:1994663:G:C	rs6675751	G	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	2246616	2246617	chr1:2246617:C:T	rs547710630	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	2556223	2556224	chr1:2556224:C:A	rs2227312	C	A	.	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	2636211	2636212	chr1:2636212:A:G	rs141683738	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	2882146	2882147	chr1:2882147:T:C	rs4373707	T	C	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	2927912	2927913	chr1:2927913:A:T	rs75007673	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	3057011	3057012	chr1:3057012:G:A	rs1109251	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	3082503	3082504	chr1:3082504:T:G	rs2981886	T	G	G	Sox1.mouse_HMG_2	6	1	-	8.399489643604976	4.047074640916609	CTGAACACCATTCAG
chr1	3313955	3313956	chr1:3313956:T:C	rs34708358	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	3313979	3313980	chr1:3313980:T:C	rs16824089	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	3386306	3386307	chr1:3386307:G:A	rs10492939	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	3540274	3540275	chr1:3540275:C:T	rs1001265607	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	3638059	3638060	chr1:3638060:G:A	rs2760319	G	A	G	Sox1.mouse_HMG_2	2	1	+	7.0894728620956275	2.44407032907941	CTGCATTGCATTCAA
chr1	3773832	3773833	chr1:3773833:A:G	rs76140795	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	3904922	3904923	chr1:3904923:A:G	rs78516285	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	3932759	3932760	chr1:3932760:C:T	rs984904023	C	T	t	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	4022130	4022131	chr1:4022131:A:G	rs10753384	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	4091060	4091061	chr1:4091061:A:G	rs115530964	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	4091075	4091076	chr1:4091076:T:C	rs57146568	T	C	t	Sox1.mouse_HMG_2	9	1	-	4.043282681318485	-2.865472097996735	ATGACTGACAGGCAT
chr1	4116045	4116046	chr1:4116046:T:C	rs6670920	T	C	t	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	4150341	4150342	chr1:4150342:G:A	rs6683453	G	A	A	Sox1.mouse_HMG_2	12	1	-	8.30434297411802	3.631755870449765	CTGATTATCATTCAC
chr1	4164379	4164380	chr1:4164380:C:G	rs75130430	C	G	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	4218876	4218877	chr1:4218877:C:G	rs12119560	C	G	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	4319295	4319296	chr1:4319296:T:G	rs11586435	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.181631976063184	-0.7668315105086251	CTGTATTTCATTCTC
chr1	4421935	4421936	chr1:4421936:G:C	rs72632772	G	C	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	4421941	4421942	chr1:4421942:C:T	rs12026870	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	4511767	4511768	chr1:4511768:G:C	rs61765365	G	C	G	Sox1.mouse_HMG_2	8	1	-	7.4115740838938455	1.693039421358137	GTAAATACCATTCTC
chr1	4519920	4519921	chr1:4519921:G:C	rs13375249	G	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	4584559	4584560	chr1:4584560:G:T	rs77312244	G	T	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	4705527	4705528	chr1:4705528:T:C	rs10915590	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	4911564	4911565	chr1:4911565:C:T	rs12034590	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	5225009	5225010	chr1:5225010:T:C	rs7524460	T	C	C	Sox1.mouse_HMG_2	10	1	+	1.769190638354758	-5.0787509399255235	CTGGAAACCATTCAC
chr1	5279470	5279471	chr1:5279471:A:G	rs66495077	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	5302403	5302404	chr1:5302404:C:T	rs9439552	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	5535802	5535803	chr1:5535803:C:A	rs9439609	C	A	C	Sox1.mouse_HMG_2	8	1	+	2.851734733088745	-1.9977620824233537	ATGAATATCCTGCAT
chr1	5604836	5604837	chr1:5604837:C:T	rs72641915	C	T	c	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	5612086	5612087	chr1:5612087:G:A	rs144260377	G	A	G	Sox1.mouse_HMG_2	8	1	-	6.496311331372883	0.8518846409908963	CTGACTCACAGTCAC
chr1	5643491	5643492	chr1:5643492:G:A	rs17028491	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	5827115	5827116	chr1:5827116:T:G	rs72854783	T	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	5940217	5940218	chr1:5940218:T:C	rs57752624	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.720586777210262	-2.18816800210496	ATGAATGCCATTGTC
chr1	5949732	5949733	chr1:5949733:C:T	rs115695822	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	5977636	5977637	chr1:5977637:T:C	rs10864303	T	C	C	Sox1.mouse_HMG_2	2	1	-	3.5819578815657227	8.227360414581938	ATACATTCCATTCAG
chr1	5982352	5982353	chr1:5982353:C:T	rs72630649	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	6055778	6055779	chr1:6055779:T:C	rs4908496	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	6122383	6122384	chr1:6122384:G:A	rs80028342	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.152182056779811	-0.49322047623640547	CCGAACAACATTCAG
chr1	6517901	6517902	chr1:6517902:C:T	rs4243832	C	T	c	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	7229898	7229899	chr1:7229899:A:G	rs763197	A	G	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr1	7335679	7335680	chr1:7335680:C:T	rs763167	C	T	C	Sox1.mouse_HMG_2	14	1	+	5.657575230685898	6.532187573408635	GCAAATAGCATTCAC
chr1	7564095	7564096	chr1:7564096:G:A	rs67356722	G	A	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	7587492	7587493	chr1:7587493:G:T	rs115692233	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	7587497	7587498	chr1:7587498:T:C	rs11120983	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	7698699	7698700	chr1:7698700:T:C	rs12756299	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.1157672103218923	-3.792987568993328	GAGAACAGCATTCAG
chr1	7891054	7891055	chr1:7891055:T:C	rs56821207	T	C	T	Sox1.mouse_HMG_2	7	1	+	3.988466598489861	4.449411052196967	TGGAATATTATTCAG
chr1	8014686	8014687	chr1:8014687:C:T	rs748939577	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	8047898	8047899	chr1:8047899:T:A	chr1:8047899:T:A	T	A	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	8201361	8201362	chr1:8201362:C:T	rs75646688	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	8213861	8213862	chr1:8213862:T:C	rs395859	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	8213879	8213880	chr1:8213880:T:C	rs395847	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	8225011	8225012	chr1:8225012:A:G	rs424160	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	8225023	8225024	chr1:8225024:T:G	chr1:8225024:T:G	T	G	T	Sox1.mouse_HMG_2	1	1	+	5.5868929910841425	0.6384295045123317	ATGAATGCCGTTCTT
chr1	8318742	8318743	chr1:8318743:C:T	rs145227310	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	8318758	8318759	chr1:8318759:C:T	rs75632382	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	8424468	8424469	chr1:8424469:A:G	rs57310340	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	8472779	8472780	chr1:8472780:G:A	rs144470503	G	A	g	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	8472826	8472827	chr1:8472827:C:G	rs1047306668	C	G	c	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	8598369	8598370	chr1:8598370:G:C	rs113761087	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	8598417	8598418	chr1:8598418:C:T	rs79769442	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	8811253	8811254	chr1:8811254:G:A	rs12144387	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	9230976	9230977	chr1:9230977:A:G	rs2157479	A	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	9250309	9250310	chr1:9250310:G:A	rs74053623	G	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	9287120	9287121	chr1:9287121:C:T	rs9662285	C	T	T	Sox1.mouse_HMG_2	2	1	-	4.067560018158086	-0.5778425148581307	CCGCATTCCATTCAT
chr1	9401961	9401962	chr1:9401962:G:A	rs76569153	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	9557623	9557624	chr1:9557624:G:A	rs72646718	G	A	G	Sox1.mouse_HMG_2	14	1	-	5.02263741080458	5.8972497535273165	CTGAATATCATGCTC
chr1	10083491	10083492	chr1:10083492:T:A	rs79980202	T	A	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	10205547	10205548	chr1:10205548:G:A	rs4348727	G	A	g	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	10215533	10215534	chr1:10215534:C:T	rs2027330	C	T	t	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	10283842	10283843	chr1:10283843:G:A	rs182912146	G	A	G	Sox1.mouse_HMG_2	2	1	+	12.37313085620294	7.727728323186724	TTGACTGCCATTCAT
chr1	10339885	10339886	chr1:10339886:A:C	rs12143935	A	C	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	10435197	10435198	chr1:10435198:C:T	rs12566414	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr1	11051095	11051096	chr1:11051096:G:C	rs12143364	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	11051103	11051104	chr1:11051104:G:A	rs72647264	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	11187780	11187781	chr1:11187781:T:C	rs7555071	T	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	11353090	11353091	chr1:11353091:T:C	rs149450737	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.889682860365139	-2.0190719189500803	AGGACTTCCATTCTC
chr1	11804069	11804070	chr1:11804070:A:G	rs186197396	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	11913465	11913466	chr1:11913466:A:C	rs34550591	A	C	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	11982203	11982204	chr1:11982204:A:G	rs2236055	A	G	G	Sox1.mouse_HMG_2	3	1	+	3.4730911500006085	-3.4356636293146128	TTGAATGGCATCCTC
chr1	12149302	12149303	chr1:12149303:T:C	rs599098	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	12174827	12174828	chr1:12174828:T:C	rs597519	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	12249420	12249421	chr1:12249421:A:G	rs79784349	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	12369455	12369456	chr1:12369456:C:T	rs147459426	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	12435063	12435064	chr1:12435064:C:T	rs138489858	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr1	12435064	12435065	chr1:12435065:G:A	rs76572263	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	12558311	12558312	chr1:12558312:C:T	rs144726415	C	T	c	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	12615317	12615318	chr1:12615318:T:G	rs1035740714	T	G	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	12623414	12623415	chr1:12623415:T:C	rs3000893	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	12693318	12693319	chr1:12693319:T:C	rs6690766	T	C	T	Sox1.mouse_HMG_2	5	1	+	9.059697343973161	2.1509425646579396	TTGAATTGCATTTAA
chr1	12711709	12711710	chr1:12711710:G:A	rs3000868	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	13116748	13116749	chr1:13116749:C:T	rs35794555	C	T	-	Sox1.mouse_HMG_2	10	1	-	2.4851503190227877	-1.6101937435323959	GTGACCTACAGTCAG
chr1	13458593	13458594	chr1:13458594:A:G	rs2999877	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	13547112	13547113	chr1:13547113:A:G	rs367102	A	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	13564269	13564270	chr1:13564270:C:T	rs61516987	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	13564280	13564281	chr1:13564281:G:A	rs58121320	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	13570597	13570598	chr1:13570598:C:T	rs112054854	C	T	C	Sox1.mouse_HMG_2	2	1	-	2.9658665657194745	-1.6795359672967418	GTGAACAGCAGTCTT
chr1	13704275	13704276	chr1:13704276:A:C	rs1375744533	A	C	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	13726978	13726979	chr1:13726979:T:C	rs16852866	T	C	C	Sox1.mouse_HMG_2	10	1	+	3.9152638824899597	-2.932677695790322	ATGACTTCTATTCTG
chr1	13809625	13809626	chr1:13809626:G:A	rs74058414	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	13830175	13830176	chr1:13830176:G:A	rs58625143	G	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	13830200	13830201	chr1:13830201:G:A	rs61255346	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	13916276	13916277	chr1:13916277:C:T	rs16853148	C	T	T	Sox1.mouse_HMG_2	2	1	-	6.38647477656382	1.7410722435476025	GCGAATGTCATTCTT
chr1	13965814	13965815	chr1:13965815:T:C	rs1997780	T	C	C	Sox1.mouse_HMG_2	11	1	+	5.656236428240521	-1.2525183510746993	TTGAATTACATTGTT
chr1	14024626	14024627	chr1:14024627:A:C	rs932406	A	C	A	Sox1.mouse_HMG_2	5	1	-	3.5109404007832516	-3.397814378531967	AGGAATTACCTTCAA
chr1	14119088	14119089	chr1:14119089:C:A	rs4573511	C	A	C	Sox1.mouse_HMG_2	8	1	-	3.0776397017373363	3.151747673891058	CTGAAAAAGATTCAG
chr1	14126213	14126214	chr1:14126214:G:A	rs12068639	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	14141224	14141225	chr1:14141225:T:C	rs4661477	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.3142432752800772	-1.3297490322131567	GTGATTACCATTTAA
chr1	14151448	14151449	chr1:14151449:G:A	rs929125	G	A	G	Sox1.mouse_HMG_2	14	1	-	1.798739313336315	2.673351656059051	CTGACAGGCAGTCAC
chr1	14373312	14373313	chr1:14373313:G:A	rs76589709	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	14658861	14658862	chr1:14658862:C:T	rs7512426	C	T	T	Sox1.mouse_HMG_2	10	1	-	4.710876267843618	0.6155322052884352	GTGAATTACAGTAAA
chr1	14755566	14755567	chr1:14755567:C:T	rs12086692	C	T	c	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	14811341	14811342	chr1:14811342:A:G	rs74059396	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	14863373	14863374	chr1:14863374:T:C	rs3765383	T	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	14863380	14863381	chr1:14863381:G:A	rs3765382	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	15186384	15186385	chr1:15186385:A:G	rs74684148	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	15257114	15257115	chr1:15257115:T:C	rs17406208	T	C	c	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	15365043	15365044	chr1:15365044:A:C	rs10803382	A	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	15382428	15382429	chr1:15382429:G:C	rs78238837	G	C	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	15459699	15459700	chr1:15459700:A:G	rs4661627	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	15595278	15595279	chr1:15595279:A:C	rs16849152	A	C	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	15680895	15680896	chr1:15680896:G:A	rs34206873	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.473255110227808	-0.19933199344044705	TTGAAGCTCATTCAT
chr1	15687777	15687778	chr1:15687778:A:T	rs148059685	A	T	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	15741408	15741409	chr1:15741409:T:C	rs7516080	T	C	t	Sox1.mouse_HMG_2	1	1	+	4.491019644789492	-0.15297266270374119	GTGAATCTCAGTCTC
chr1	15741441	15741442	chr1:15741442:C:T	rs7547218	C	T	c	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	15850488	15850489	chr1:15850489:G:C	rs57755226	G	C	G	Sox1.mouse_HMG_2	0	1	-	1.769190638354757	1.4338306114379136	CTGTATACCTTTCAC
chr1	15850789	15850790	chr1:15850790:A:G	rs10927867	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	15950040	15950041	chr1:15950041:A:G	rs11489779	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.70448689453158	-3.116925874628493	CTCAATGACATTCCT
chr1	15950057	15950058	chr1:15950058:C:T	rs11489780	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	16102042	16102043	chr1:16102043:T:C	rs61769920	T	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	16115232	16115233	chr1:16115233:C:G	rs11260867	C	G	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	16467619	16467620	chr1:16467620:G:C	rs1877623	G	C	.	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	16723458	16723459	chr1:16723459:C:T	rs16854927	C	T	.	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	16951616	16951617	chr1:16951617:A:G	rs1810516	A	G	.	Sox1.mouse_HMG_2	0	1	-	3.0193852890541066	3.285328482823539	TTCAATACCTTTCAC
chr1	17023302	17023303	chr1:17023303:C:T	rs978528	C	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	17063694	17063695	chr1:17063695:G:A	rs78464635	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	17097637	17097638	chr1:17097638:T:C	rs2244949	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	17167603	17167604	chr1:17167604:A:G	rs2454173	A	G	A	Sox1.mouse_HMG_2	11	1	-	4.9860183291223645	-1.9227364501928559	CAGAATTCCATTTAA
chr1	17272948	17272949	chr1:17272949:C:T	rs2977293	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	17346606	17346607	chr1:17346607:C:T	rs35210719	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	17433601	17433602	chr1:17433602:A:G	rs4920607	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	17576802	17576803	chr1:17576803:G:A	rs6702679	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	17596104	17596105	chr1:17596105:A:G	rs79627176	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	17804427	17804428	chr1:17804428:A:T	rs11203466	A	T	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	17916325	17916326	chr1:17916326:C:G	rs7534142	C	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	17920270	17920271	chr1:17920271:T:G	rs187381930	T	G	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	18139796	18139797	chr1:18139797:G:A	rs74958053	G	A	A	Sox1.mouse_HMG_2	14	1	-	8.132213745094985	9.00682608781772	ATGAGTTTCATTCAC
chr1	18184490	18184491	chr1:18184491:C:G	rs17488361	C	G	C	Sox1.mouse_HMG_2	13	1	-	5.118182837087695	3.743584515730996	TTGAATCTCATTCGA
chr1	18492206	18492207	chr1:18492207:G:A	rs6679160	G	A	G	Sox1.mouse_HMG_2	2	1	+	6.722700314079774	2.0772977810635576	ATGAATAGCTTTCTT
chr1	18540779	18540780	chr1:18540780:C:T	rs9439712	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	18883944	18883945	chr1:18883945:A:G	rs79241630	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.594548885751152	-3.3142058935640684	GGGAATCACAGTCAC
chr1	18999531	18999532	chr1:18999532:G:A	rs56032131	G	A	g	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	19011469	19011470	chr1:19011470:C:G	rs116586693	C	G	C	Sox1.mouse_HMG_2	2	1	-	6.3908159515356235	0.9981990166891858	GTGACTTACATCCAT
chr1	19079159	19079160	chr1:19079160:T:C	rs112516138	T	C	T	Sox1.mouse_HMG_2	0	1	-	5.548846862442816	4.544610629807617	ATGAATACCATCTAT
chr1	19423181	19423182	chr1:19423182:A:G	rs6686979	A	G	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	19423184	19423185	chr1:19423185:T:C	rs6689918	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	19471512	19471513	chr1:19471513:G:A	rs4912100	G	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	19579736	19579737	chr1:19579737:G:A	rs10917498	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	19682329	19682330	chr1:19682330:C:T	rs749439107	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	19715447	19715448	chr1:19715448:G:A	rs150873000	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	19765722	19765723	chr1:19765723:T:C	rs540621768	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.221038755355258	-4.6269028229250235	ATGATTAGCATGCAC
chr1	19814066	19814067	chr1:19814067:A:C	rs41264105	A	C	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	19927878	19927879	chr1:19927879:T:A	rs1093728	T	A	T	Sox1.mouse_HMG_2	5	1	+	5.112565541688658	-1.7961892376265616	CTAAATAACAGTCTG
chr1	20112819	20112820	chr1:20112820:C:G	rs617180	C	G	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	20232726	20232727	chr1:20232727:G:A	rs372513900	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	20234940	20234941	chr1:20234941:T:G	rs7514659	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	20251460	20251461	chr1:20251461:A:C	rs10916736	A	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	20417052	20417053	chr1:20417053:C:T	rs10916793	C	T	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	20587991	20587992	chr1:20587992:A:G	rs12240109	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	20604413	20604414	chr1:20604414:C:T	rs181749961	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.074996665741658	-1.5694300246403294	ATGACTCCCATTCCT
chr1	20625700	20625701	chr1:20625701:C:T	rs12045107	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	20685320	20685321	chr1:20685321:G:A	rs561471	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	20733212	20733213	chr1:20733213:C:G	rs78491441	C	G	C	Sox1.mouse_HMG_2	8	1	+	4.859197301106138	-0.8593373614295688	ATCACTTTCATTCTT
chr1	20897107	20897108	chr1:20897108:A:T	chr1:20897108:A:T	A	T	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	21090533	21090534	chr1:21090534:T:C	rs61779075	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	21177786	21177787	chr1:21177787:G:A	rs74058841	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	21490871	21490872	chr1:21490872:A:G	rs75824579	A	G	.	Sox1.mouse_HMG_2	4	1	+	7.396404429648537	0.5749916604884658	CTCAATAACATTCTC
chr1	21490900	21490901	chr1:21490901:A:G	rs72659147	A	G	.	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	21687277	21687278	chr1:21687278:G:A	rs10493008	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	21709762	21709763	chr1:21709763:A:C	rs482791	A	C	t	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	21875386	21875387	chr1:21875387:C:T	rs7354994	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	21875409	21875410	chr1:21875410:A:G	rs2445134	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.386855108732838	-2.5218996705823824	GTGAATCACATGCAC
chr1	22104426	22104427	chr1:22104427:G:A	rs72665339	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	22132676	22132677	chr1:22132677:G:A	rs742358	G	A	G	Sox1.mouse_HMG_2	13	1	+	6.844492292286884	11.790609980059534	CTGAATGACAGTCGC
chr1	22272040	22272041	chr1:22272041:G:A	rs6681709	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	22524091	22524092	chr1:22524092:T:C	rs12403289	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	22662672	22662673	chr1:22662673:T:A	chr1:22662673:T:A	T	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	22662672	22662673	chr1:22662673:T:C	rs292011	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	22737436	22737437	chr1:22737437:T:C	rs4263970	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	22814924	22814925	chr1:22814925:G:A	rs138150683	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	23159440	23159441	chr1:23159441:C:T	rs3845522	C	T	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	23362439	23362440	chr1:23362440:A:G	rs2849028	A	G	A	Sox1.mouse_HMG_2	5	1	-	7.278580916971722	0.36982613765650213	AAGAATTTCAGTCAG
chr1	23622769	23622770	chr1:23622770:A:G	rs111723401	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	23688338	23688339	chr1:23688339:C:T	rs376314374	C	T	-	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	23871836	23871837	chr1:23871837:T:A	rs2502998	T	A	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	23882292	23882293	chr1:23882293:C:T	rs7541711	C	T	C	Sox1.mouse_HMG_2	0	1	-	6.464600217750773	7.468836450385975	GTGAAAACCAGTCAT
chr1	23951604	23951605	chr1:23951605:A:T	rs61774312	A	T	t	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	23951635	23951636	chr1:23951636:C:T	rs972974378	C	T	c	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	23951638	23951639	chr1:23951639:A:G	rs367704261	A	G	a	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	24010839	24010840	chr1:24010840:A:G	rs375619845	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	24028356	24028357	chr1:24028357:G:A	rs4288540	G	A	A	Sox1.mouse_HMG_2	8	1	-	5.27665537739253	-0.3677713129894572	CTGAATAACATGTAT
chr1	24386728	24386729	chr1:24386729:T:C	rs192816631	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	24419213	24419214	chr1:24419214:T:G	rs760969	T	G	T	Sox1.mouse_HMG_2	4	1	-	10.32889208851012	7.946831020643199	GAGAATACCATTCAG
chr1	24436067	24436068	chr1:24436068:G:T	rs10903088	G	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	24699102	24699103	chr1:24699103:C:T	rs77959984	C	T	C	Sox1.mouse_HMG_2	14	1	-	10.664252115426962	10.499610867532015	CAGAATACCATTCAG
chr1	24965824	24965825	chr1:24965825:G:A	rs115583054	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.161633389246115	-0.5109537144221405	CTGAATGACATGCTG
chr1	25300809	25300810	chr1:25300810:G:A	rs116374581	G	A	-	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	25527637	25527638	chr1:25527638:G:A	rs139061989	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	25531591	25531592	chr1:25531592:G:A	rs35471383	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	25561748	25561749	chr1:25561749:A:G	rs75471743	A	G	A	Sox1.mouse_HMG_2	10	1	-	14.80701945599503	7.959077877714749	GTGAATTACATTCAC
chr1	25566388	25566389	chr1:25566389:T:G	rs3924486	T	G	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	26190775	26190776	chr1:26190776:A:G	rs41284333	A	G	A	Sox1.mouse_HMG_2	13	1	+	4.121295120331892	-0.8248225674407562	CAGAGTACCATTCAC
chr1	26377838	26377839	chr1:26377839:A:T	rs6598962	A	T	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	26469258	26469259	chr1:26469259:C:G	rs146706631	C	G	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	26545177	26545178	chr1:26545178:C:T	rs4970486	C	T	t	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	26971179	26971180	chr1:26971180:A:G	rs149496202	A	G	A	Sox1.mouse_HMG_2	0	1	-	14.89341945749	15.159362651259434	TTGAATTTCATTCAT
chr1	27489053	27489054	chr1:27489054:G:A	rs568659615	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	27540810	27540811	chr1:27540811:C:T	rs147466243	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	27773977	27773978	chr1:27773978:C:G	rs72655050	C	G	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	27904992	27904993	chr1:27904993:T:A	rs28988929	T	A	T	Sox1.mouse_HMG_2	5	1	-	8.842293852549956	15.751048631865176	TTGAAATACATTCAT
chr1	27973567	27973568	chr1:27973568:T:A	rs33981147	T	A	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	28079327	28079328	chr1:28079328:G:A	rs72875058	G	A	g	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	28079339	28079340	chr1:28079340:T:G	rs112374368	T	G	N	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	28297586	28297587	chr1:28297587:C:T	rs75853190	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	28343226	28343227	chr1:28343227:C:T	rs114111950	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	28511367	28511368	chr1:28511368:A:G	rs2853735	A	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	28963103	28963104	chr1:28963104:G:A	rs2985319	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	29114027	29114028	chr1:29114028:G:C	rs558956	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	29254577	29254578	chr1:29254578:C:G	rs16838061	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	29368037	29368038	chr1:29368038:T:C	rs56383740	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	29371955	29371956	chr1:29371956:G:A	rs12568406	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	29405354	29405355	chr1:29405355:T:C	rs56913409	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	29490846	29490847	chr1:29490847:C:G	rs147123451	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	29578929	29578930	chr1:29578930:G:C	rs79308240	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	29624446	29624447	chr1:29624447:G:A	rs9283399	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	29663873	29663874	chr1:29663874:C:T	rs271364	C	T	t	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	29681405	29681406	chr1:29681406:A:G	rs271346	A	G	.	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	29711750	29711751	chr1:29711751:G:A	rs914814667	G	A	G	Sox1.mouse_HMG_2	14	1	-	5.5507314064626705	6.425343749185407	ATGAATGACAGCCAC
chr1	29974546	29974547	chr1:29974547:T:C	rs267707	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.635200850262522	-1.2735539290526976	AGAAATGTCATTCAT
chr1	30060001	30060002	chr1:30060002:T:G	rs419527	T	G	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	30188571	30188572	chr1:30188572:C:G	rs7524193	C	G	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	30420944	30420945	chr1:30420945:C:T	rs35405458	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	30465412	30465413	chr1:30465413:T:C	rs61767995	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	30527343	30527344	chr1:30527344:G:A	rs385109	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	30610262	30610263	chr1:30610263:T:C	rs520603	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	30668707	30668708	chr1:30668708:C:T	rs12409891	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	31362679	31362680	chr1:31362680:C:T	rs6663779	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	31572901	31572902	chr1:31572902:G:A	rs1187689045	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	31583594	31583595	chr1:31583595:C:T	rs76867880	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	31600582	31600583	chr1:31600583:C:T	rs6662073	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	31726295	31726296	chr1:31726296:C:T	rs75751138	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	31956475	31956476	chr1:31956476:C:T	rs115565496	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	32062568	32062569	chr1:32062569:T:C	rs115483705	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.638575847620642	-2.2701789316945793	GTGACTGACATACAG
chr1	32062579	32062580	chr1:32062580:G:A	chr1:32062580:G:A	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	32551043	32551044	chr1:32551044:G:A	rs72652159	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	32551079	32551080	chr1:32551080:G:A	rs72652160	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.6003074206830954	-1.045095112333121	CTGAATGCCCTTCTA
chr1	32754667	32754668	chr1:32754668:C:T	rs148520338	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	32780838	32780839	chr1:32780839:T:C	rs2282293	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	32892989	32892990	chr1:32892990:G:A	rs142544582	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	32953604	32953605	chr1:32953605:C:T	rs194652	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	32953640	32953641	chr1:32953641:T:C	rs12409620	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	33161210	33161211	chr1:33161211:C:T	rs147641540	C	T	c	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	33161211	33161212	chr1:33161212:G:A	rs140604544	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	33301688	33301689	chr1:33301689:G:A	rs10798937	G	A	G	Sox1.mouse_HMG_2	10	1	+	4.822207366062556	0.7268633035073714	ATAAATTCCAGTCTC
chr1	33459005	33459006	chr1:33459006:T:C	rs12029974	T	C	T	Sox1.mouse_HMG_2	6	1	-	2.4386729883430016	0.9984955664743601	TTGAATACCAACCAT
chr1	33883958	33883959	chr1:33883959:G:C	rs4653356	G	C	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	34010129	34010130	chr1:34010130:C:T	rs517542	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	34328228	34328229	chr1:34328229:T:G	rs10914912	T	G	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	34519857	34519858	chr1:34519858:A:G	rs3845485	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	34737139	34737140	chr1:34737140:T:C	rs28635418	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	34788242	34788243	chr1:34788243:C:T	rs6697367	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	35218665	35218666	chr1:35218666:T:C	rs72657987	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	35931403	35931404	chr1:35931404:A:C	chr1:35931404:A:C	A	C	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	35931407	35931408	chr1:35931408:A:C	chr1:35931408:A:C	A	C	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	36023093	36023094	chr1:36023094:A:C	rs12565715	A	C	A	Sox1.mouse_HMG_2	5	1	-	6.062273158903166	-0.8464816204120544	CTGACTTGGATTCAG
chr1	36379996	36379997	chr1:36379997:A:C	rs74628160	A	C	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	36421731	36421732	chr1:36421732:C:G	rs2153337	C	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	36575133	36575134	chr1:36575134:A:T	rs4653196	A	T	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	36729451	36729452	chr1:36729452:C:G	rs60185022	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	36835334	36835335	chr1:36835335:A:T	rs3767042	A	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	36864385	36864386	chr1:36864386:C:T	rs565537	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	36864392	36864393	chr1:36864393:C:T	rs143504394	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	36886085	36886086	chr1:36886086:C:T	rs56322441	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	36886091	36886092	chr1:36886092:T:C	rs509425	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	36916063	36916064	chr1:36916064:G:A	rs112783139	G	A	G	Sox1.mouse_HMG_2	14	1	-	7.384301658070333	8.25891400079307	CTGAATTTCATTGAC
chr1	37172040	37172041	chr1:37172041:G:C	chr1:37172041:G:C	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	37315452	37315453	chr1:37315453:T:C	rs6673253	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	37322961	37322962	chr1:37322962:C:T	rs115912966	C	T	C	Sox1.mouse_HMG_2	7	1	+	3.1164214476976086	2.6554769939905016	ATGAATCCCAGGCAT
chr1	37333084	37333085	chr1:37333085:G:A	rs58793672	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	37557714	37557715	chr1:37557715:C:T	rs11749	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	37984694	37984695	chr1:37984695:A:G	rs6680796	A	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	38819880	38819881	chr1:38819881:G:T	rs1886690	G	T	g	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	39040468	39040469	chr1:39040469:A:G	rs11205599	A	G	a	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	39078966	39078967	chr1:39078967:G:A	rs4306115	G	A	g	Sox1.mouse_HMG_2	2	1	+	6.000442832611964	1.3550402995957462	CTGAATAGTATTCTA
chr1	39200966	39200967	chr1:39200967:T:C	rs78323190	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.592419611579823	-3.316335167735398	TTGAATAACATTAGG
chr1	39571271	39571272	chr1:39571272:G:A	rs61743745	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	39700347	39700348	chr1:39700348:C:T	rs4142010	C	T	c	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	39816772	39816773	chr1:39816773:G:A	rs72666932	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	39922703	39922704	chr1:39922704:G:T	rs3117092	G	T	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	39982547	39982548	chr1:39982548:T:C	rs72666997	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.065984612388941	-0.578007695104295	ATAATTTACATTCAG
chr1	40162760	40162761	chr1:40162761:G:A	rs61780412	G	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	40183504	40183505	chr1:40183505:G:C	rs14404	G	C	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	40315031	40315032	chr1:40315032:G:T	rs209919	G	T	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	40323674	40323675	chr1:40323675:T:C	rs449541	T	C	C	Sox1.mouse_HMG_2	14	1	-	6.138214436187601	6.302855684082549	ATGAATCAGATTCAA
chr1	40323688	40323689	chr1:40323689:T:A	rs425509	T	A	T	Sox1.mouse_HMG_2	0	1	-	6.138214436187601	5.20339503669981	ATGAATCAGATTCAA
chr1	40742755	40742756	chr1:40742756:A:G	rs7527402	A	G	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	40779681	40779682	chr1:40779682:C:T	rs2769255	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	40842362	40842363	chr1:40842363:C:T	rs113717677	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	40876039	40876040	chr1:40876040:G:A	rs140672716	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	40939991	40939992	chr1:40939992:G:T	rs6695161	G	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	40945576	40945577	chr1:40945577:A:G	rs10889750	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	42174580	42174581	chr1:42174581:A:G	rs649956	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	42183377	42183378	chr1:42183378:A:G	rs56322807	A	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	42222858	42222859	chr1:42222859:C:T	rs567153889	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	42259668	42259669	chr1:42259669:T:G	rs116572095	T	G	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	42399796	42399797	chr1:42399797:G:A	rs56751964	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	42427492	42427493	chr1:42427493:G:A	rs11210643	G	A	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	42555673	42555674	chr1:42555674:T:C	rs4385762	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	42578492	42578493	chr1:42578493:G:T	rs7519637	G	T	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	42578503	42578504	chr1:42578504:G:T	rs7519642	G	T	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	42692818	42692819	chr1:42692819:G:A	rs10789424	G	A	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	42692838	42692839	chr1:42692839:C:T	rs10493113	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	42736196	42736197	chr1:42736197:C:A	rs111438636	C	A	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	42939472	42939473	chr1:42939473:C:T	rs1274021807	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	42947121	42947122	chr1:42947122:A:G	rs900837	A	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	42978996	42978997	chr1:42978997:G:A	rs74386636	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	43183836	43183837	chr1:43183837:A:G	rs663824	A	G	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	43209302	43209303	chr1:43209303:A:G	rs2453414	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.846756986830282	-0.9746557823297891	ATGCATAGCAGTCAA
chr1	43550877	43550878	chr1:43550878:G:C	rs116156761	G	C	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	43942781	43942782	chr1:43942782:T:C	rs2485989	T	C	T	Sox1.mouse_HMG_2	6	1	-	3.6830696298062886	2.2428922079376488	CGGTATAACATTCAA
chr1	44128668	44128669	chr1:44128669:C:T	rs76285192	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	44274313	44274314	chr1:44274314:A:G	rs35554553	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	44274351	44274352	chr1:44274352:T:C	rs369493	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	44458778	44458779	chr1:44458779:G:A	rs12057674	G	A	A	Sox1.mouse_HMG_2	0	1	+	5.298561035782824	6.3027972684180265	GTGACTTACACTCAG
chr1	44704339	44704340	chr1:44704340:A:G	rs12088087	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	45353672	45353673	chr1:45353673:C:T	rs557759185	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	45646545	45646546	chr1:45646546:T:C	rs11211149	T	C	t	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	45752501	45752502	chr1:45752502:A:C	rs59573476	A	C	a	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	45953348	45953349	chr1:45953349:G:A	rs7522601	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	46044969	46044970	chr1:46044970:C:T	rs1707317	C	T	T	Sox1.mouse_HMG_2	14	1	+	2.9605265137470504	3.8351388564697864	ATGAATGCCTTTCGC
chr1	46174293	46174294	chr1:46174294:T:C	rs17102061	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	46181538	46181539	chr1:46181539:T:A	rs185456819	T	A	T	Sox1.mouse_HMG_2	3	1	-	3.903176201998182	-3.0055785773170385	CTGAATTTCCTTCTG
chr1	46494172	46494173	chr1:46494173:A:C	rs75880299	A	C	A	Sox1.mouse_HMG_2	9	1	+	5.053094203938901	-1.855660575376319	AAGACTTGCAGTCAG
chr1	46528676	46528677	chr1:46528677:T:G	rs115830566	T	G	C	Sox1.mouse_HMG_2	13	1	-	4.107887841951548	-2.2128281671777987	CTGAATCCCACTCAG
chr1	46600710	46600711	chr1:46600711:T:C	rs11211319	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	46614541	46614542	chr1:46614542:A:G	chr1:46614542:A:G	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr1	46681860	46681861	chr1:46681861:T:C	rs11211339	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	46715077	46715078	chr1:46715078:G:C	rs12078635	G	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	46935104	46935105	chr1:46935105:A:C	rs376499620	A	C	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	47143816	47143817	chr1:47143817:T:C	rs10789501	T	C	t	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	47185487	47185488	chr1:47185488:T:C	rs79870429	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	47185506	47185507	chr1:47185507:C:T	rs72894592	C	T	c	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	47185516	47185517	chr1:47185517:G:A	rs76178225	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	47243003	47243004	chr1:47243004:A:T	rs2057393	A	T	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	47592858	47592859	chr1:47592859:T:G	rs3123796	T	G	T	Sox1.mouse_HMG_2	4	1	-	4.107887841951548	1.7258267740846271	CTGAATCCCACTCAG
chr1	47592881	47592882	chr1:47592882:G:A	rs146114273	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	47721095	47721096	chr1:47721096:G:A	rs1992298	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	47723580	47723581	chr1:47723581:C:T	rs7530242	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	47748406	47748407	chr1:47748407:C:A	rs2119101	C	A	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	47821667	47821668	chr1:47821668:G:T	rs12065262	G	T	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	47894634	47894635	chr1:47894635:T:G	chr1:47894635:T:G	T	G	T	Sox1.mouse_HMG_2	9	1	-	2.610121802497341	-4.298632976817879	CCGAAATGCATTCAG
chr1	47940994	47940995	chr1:47940995:A:G	rs116289046	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	47972412	47972413	chr1:47972413:C:A	rs77136960	C	A	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	48109437	48109438	chr1:48109438:A:T	rs17299092	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	48196541	48196542	chr1:48196542:C:T	rs823845	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	48344439	48344440	chr1:48344440:T:C	rs1120985	T	C	T	Sox1.mouse_HMG_2	4	1	-	6.762179728239631	-0.059233040920441626	GTGAACTTCATTCAG
chr1	48683822	48683823	chr1:48683823:C:T	rs17104657	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	48823543	48823544	chr1:48823544:A:G	rs11810411	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	48916834	48916835	chr1:48916835:G:A	rs10430111	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	49346631	49346632	chr1:49346632:T:C	rs2356392	T	C	C	Sox1.mouse_HMG_2	6	1	-	2.395784964315798	0.9556075424471598	GTGAGGACCATTCAT
chr1	50320993	50320994	chr1:50320994:C:T	rs11205704	C	T	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	50369090	50369091	chr1:50369091:C:T	rs113471291	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	50527210	50527211	chr1:50527211:C:T	rs11205728	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	50704216	50704217	chr1:50704217:T:C	rs115295033	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	50742901	50742902	chr1:50742902:G:A	rs76589723	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.022834180317578	1.3502470766493229	GTGAAAACCATTCTT
chr1	50969937	50969938	chr1:50969938:T:G	rs76136361	T	G	T	Sox1.mouse_HMG_2	0	1	-	3.0764096615509553	2.4075334558325965	AGGAAAGACATTCAG
chr1	51237970	51237971	chr1:51237971:T:C	rs78334692	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	52238657	52238658	chr1:52238658:A:C	rs3790525	A	C	A	Sox1.mouse_HMG_2	1	1	-	6.443609045049254	1.495145558477443	TTGGCTATCATTCAT
chr1	52890005	52890006	chr1:52890006:C:T	rs2124860	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	52910172	52910173	chr1:52910173:G:A	rs962325015	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	52917647	52917648	chr1:52917648:T:C	rs74482100	T	C	T	Sox1.mouse_HMG_2	11	1	+	7.036576184005158	0.12782140468993763	ATTAATTACAGTCAT
chr1	53015031	53015032	chr1:53015032:G:A	rs80253221	G	A	g	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	53015072	53015073	chr1:53015073:G:A	rs7529265	G	A	N	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	53144421	53144422	chr1:53144422:A:G	rs11206113	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	53144449	53144450	chr1:53144450:G:A	rs11206114	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	53161061	53161062	chr1:53161062:C:G	rs7516971	C	G	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	53165241	53165242	chr1:53165242:G:C	rs1288333	G	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	53291658	53291659	chr1:53291659:A:C	rs1288501	A	C	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	53313768	53313769	chr1:53313769:G:T	rs12084300	G	T	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	53404221	53404222	chr1:53404222:T:C	rs150046356	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	53415581	53415582	chr1:53415582:A:G	rs6683597	A	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	53547788	53547789	chr1:53547789:G:C	rs2316193	G	C	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	53547791	53547792	chr1:53547792:C:T	rs2316194	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	53551759	53551760	chr1:53551760:G:C	rs72895264	G	C	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	53626899	53626900	chr1:53626900:G:A	rs12405264	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	53890195	53890196	chr1:53890196:A:G	rs6588495	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	54323947	54323948	chr1:54323948:A:C	rs71637840	A	C	A	Sox1.mouse_HMG_2	9	1	+	4.506368213172501	-2.4023865661427197	CTGAGTATCATTTAT
chr1	54329256	54329257	chr1:54329257:A:G	rs12564882	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	54409103	54409104	chr1:54409104:C:G	rs72895826	C	G	C	Sox1.mouse_HMG_2	5	1	+	8.59935450255538	8.59935450255538	ATGAACAGCATTCAA
chr1	54437056	54437057	chr1:54437057:C:T	rs937764699	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	54489392	54489393	chr1:54489393:C:A	rs72899606	C	A	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	54703967	54703968	chr1:54703968:T:C	rs114370681	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	54953302	54953303	chr1:54953303:C:T	rs6701789	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	54979391	54979392	chr1:54979392:C:T	rs2059687	C	T	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	54987882	54987883	chr1:54987883:G:A	rs13374004	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	54990862	54990863	chr1:54990863:C:T	rs2249480	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	55189143	55189144	chr1:55189144:T:C	rs75595726	T	C	T	Sox1.mouse_HMG_2	10	1	+	6.2525740683452256	-0.5953675099350554	AACAATTCCATTCAT
chr1	55504074	55504075	chr1:55504075:C:T	rs17416336	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	55592573	55592574	chr1:55592574:T:C	rs1155836	T	C	C	Sox1.mouse_HMG_2	6	1	-	6.113374301991332	4.673196880122693	TGGAATATCATTTAT
chr1	55623309	55623310	chr1:55623310:A:G	rs11206643	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.986186826978417	1.0400691392057682	ACTAATAACATTCAT
chr1	55698717	55698718	chr1:55698718:G:T	rs2819489	G	T	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	56137841	56137842	chr1:56137842:T:A	rs77759064	T	A	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	56262747	56262748	chr1:56262748:A:G	rs56022955	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	56338685	56338686	chr1:56338686:G:A	rs12079898	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	56435848	56435849	chr1:56435849:C:T	rs554693601	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	56527106	56527107	chr1:56527107:C:T	rs78616610	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	56585006	56585007	chr1:56585007:C:T	rs4469733	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	56799844	56799845	chr1:56799845:T:C	rs1935556	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	56818095	56818096	chr1:56818096:T:C	rs17114400	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	57072858	57072859	chr1:57072859:C:G	rs6660463	C	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	57281730	57281731	chr1:57281731:A:G	rs648607	A	G	G	Sox1.mouse_HMG_2	5	1	+	3.72690253993672	3.72690253993672	CTGAAAACCATTTAG
chr1	57307416	57307417	chr1:57307417:C:G	rs17115580	C	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	57500305	57500306	chr1:57500306:C:T	rs143531376	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	57530724	57530725	chr1:57530725:C:T	rs2793626	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	57591165	57591166	chr1:57591166:G:A	rs79578522	G	A	g	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	57984735	57984736	chr1:57984736:G:A	rs76690137	G	A	G	Sox1.mouse_HMG_2	7	1	+	5.73200417563963	6.433058995180706	TTAAATTGCATTTAT
chr1	58033136	58033137	chr1:58033137:T:C	rs555975227	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	58257885	58257886	chr1:58257886:G:A	rs17117200	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	58436815	58436816	chr1:58436816:T:C	rs706428	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	58573676	58573677	chr1:58573677:A:C	rs232845	A	C	A	Sox1.mouse_HMG_2	2	1	+	3.293142656881652	2.545928255051431	CTAAATATCATCCAG
chr1	58622300	58622301	chr1:58622301:T:C	rs60698357	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	58735237	58735238	chr1:58735238:T:C	rs2811865	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	58814963	58814964	chr1:58814964:A:G	rs72911550	A	G	A	Sox1.mouse_HMG_2	0	1	-	5.316030037770997	5.581973231540429	TTGACTTTCATTCCC
chr1	58840358	58840359	chr1:58840359:A:G	rs3015322	A	G	G	Sox1.mouse_HMG_2	13	1	+	4.195741344822983	-0.7503763429496648	GTGAGTCACATTCAG
chr1	58875225	58875226	chr1:58875226:C:T	rs142158310	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	58972530	58972531	chr1:58972531:G:A	rs2716128	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	58979423	58979424	chr1:58979424:G:C	rs72921602	G	C	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	59010922	59010923	chr1:59010923:T:C	rs752281	T	C	C	Sox1.mouse_HMG_2	14	1	+	5.69723221465263	4.822619871929894	CTGAATTGCATTTGT
chr1	59052598	59052599	chr1:59052599:G:A	rs11207378	G	A	g	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	59181378	59181379	chr1:59181379:C:T	rs78147819	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	59243859	59243860	chr1:59243860:T:C	rs10889133	T	C	T	Sox1.mouse_HMG_2	13	1	-	6.538844016468341	1.5927263286956919	AAAAATTTCATTCAT
chr1	59243868	59243869	chr1:59243869:T:A	rs7529588	T	A	A	Sox1.mouse_HMG_2	4	1	-	6.538844016468341	-0.28256875269173143	AAAAATTTCATTCAT
chr1	59272156	59272157	chr1:59272157:T:G	rs11207434	T	G	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	59423668	59423669	chr1:59423669:C:T	rs74339020	C	T	C	Sox1.mouse_HMG_2	0	1	+	3.2318417512633686	2.965898557493936	CTGAATACCCTTCCT
chr1	59443592	59443593	chr1:59443593:C:T	rs745943081	C	T	C	Sox1.mouse_HMG_2	7	1	+	2.6880310697317427	2.2270866160246365	AGGAATGCCATTAAG
chr1	59541602	59541603	chr1:59541603:T:C	rs2798652	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	59687012	59687013	chr1:59687013:A:G	rs12027119	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	59987240	59987241	chr1:59987241:T:C	rs1295665331	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	60014963	60014964	chr1:60014964:T:C	rs74085873	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.278998008215699	-3.6297567710995198	AAGAATTGCCTTCAG
chr1	60041071	60041072	chr1:60041072:G:A	rs10493277	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr1	60213248	60213249	chr1:60213249:G:T	rs972916	G	T	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	60354931	60354932	chr1:60354932:G:C	rs7546563	G	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	60760234	60760235	chr1:60760235:A:G	rs17302660	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	60825802	60825803	chr1:60825803:C:A	rs111357420	C	A	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	60865936	60865937	chr1:60865937:A:G	rs446550	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	60867749	60867750	chr1:60867750:G:A	rs746206375	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.614323391410324	0.9689208583941057	TTGAATAACATGCTC
chr1	60923141	60923142	chr1:60923142:T:C	rs555880	T	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	61097487	61097488	chr1:61097488:G:A	chr1:61097488:G:A	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	61102252	61102253	chr1:61102253:A:T	rs77176619	A	T	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	61102266	61102267	chr1:61102267:G:A	rs964091	G	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	61157082	61157083	chr1:61157083:G:A	rs334712	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	61181483	61181484	chr1:61181484:T:G	rs12086591	T	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	61181495	61181496	chr1:61181496:G:A	rs12081195	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	61190761	61190762	chr1:61190762:C:G	rs143648070	C	G	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	61247245	61247246	chr1:61247246:T:C	rs333166	T	C	T	Sox1.mouse_HMG_2	4	1	-	8.83995617305047	2.0185434038903987	ATCAATGGCATTCAG
chr1	61287995	61287996	chr1:61287996:T:C	rs74868264	T	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	61441217	61441218	chr1:61441218:C:G	rs2207789	C	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	61452848	61452849	chr1:61452849:C:G	rs181799623	C	G	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	61815795	61815796	chr1:61815796:C:T	rs12407806	C	T	C	Sox1.mouse_HMG_2	0	1	-	3.3928127588639114	4.397048991499114	GTAAATAGCTTTCAC
chr1	61982479	61982480	chr1:61982480:A:G	rs12057791	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.27328968432792	0.32717199655527146	CTGAGTATCAGTCAG
chr1	62135972	62135973	chr1:62135973:C:T	rs74076553	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	62314965	62314966	chr1:62314966:C:T	rs117692260	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	62357488	62357489	chr1:62357489:C:A	rs3861940	C	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	62750246	62750247	chr1:62750247:T:G	rs12133507	T	G	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr1	62755107	62755108	chr1:62755108:T:C	rs12133142	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	62908245	62908246	chr1:62908246:A:G	rs12047682	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	63099481	63099482	chr1:63099482:T:C	rs80206427	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	63124961	63124962	chr1:63124962:T:C	rs114521983	T	C	T	Sox1.mouse_HMG_2	10	1	+	3.9620188626000106	-2.88592271568027	ATAGATATCATTCAG
chr1	63152795	63152796	chr1:63152796:C:T	rs77894744	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.8195420013963903	-0.8258605316198268	GCGAGTTCCATTCAT
chr1	63200174	63200175	chr1:63200175:T:C	rs1887810	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	63245449	63245450	chr1:63245450:T:C	rs617306	T	C	C	Sox1.mouse_HMG_2	7	1	+	4.545522614685371	5.006467068392477	ATTAATCTCATTCAC
chr1	63325079	63325080	chr1:63325080:A:G	rs138443896	A	G	A	Sox1.mouse_HMG_2	5	1	-	5.817935359578769	-1.0908194197364511	TGGAATAACATTTAG
chr1	63330990	63330991	chr1:63330991:A:G	rs74349402	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.27166133422185	-1.576280244058431	ATAAAAAGCATTCAT
chr1	63453321	63453322	chr1:63453322:T:A	rs9436674	T	A	T	Sox1.mouse_HMG_2	11	1	+	10.071362485950074	3.1626077066348524	CTAAATGGCATTCAT
chr1	63507782	63507783	chr1:63507783:T:C	rs10889425	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	63635212	63635213	chr1:63635213:A:G	rs2301057	A	G	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	63698338	63698339	chr1:63698339:G:A	rs72924668	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	63729371	63729372	chr1:63729372:A:C	rs4915919	A	C	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	63837079	63837080	chr1:63837080:C:T	rs72683045	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	63910048	63910049	chr1:63910049:T:A	rs7556316	T	A	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	63995346	63995347	chr1:63995347:G:A	rs285367	G	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr1	64405291	64405292	chr1:64405292:A:G	rs2375464	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	64414399	64414400	chr1:64414400:C:T	rs35670908	C	T	-	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	64515804	64515805	chr1:64515805:C:T	rs764457	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	64678507	64678508	chr1:64678508:G:C	rs2478156	G	C	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	64756082	64756083	chr1:64756083:T:C	rs17126970	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	64822823	64822824	chr1:64822824:A:G	chr1:64822824:A:G	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	64962596	64962597	chr1:64962597:C:T	rs1039125	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	64962634	64962635	chr1:64962635:T:C	rs920919013	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	65344311	65344312	chr1:65344312:C:T	rs113476349	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	65371705	65371706	chr1:65371706:T:C	rs6693498	T	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	65430928	65430929	chr1:65430929:A:G	rs11208648	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	65515154	65515155	chr1:65515155:C:T	rs1171274	C	T	C	Sox1.mouse_HMG_2	12	1	+	11.425341862734815	6.75275475906656	AGGAATAACATTCAG
chr1	65643427	65643428	chr1:65643428:G:A	rs112291788	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	65752203	65752204	chr1:65752204:T:C	rs77477863	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	65752215	65752216	chr1:65752216:C:T	rs61780936	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	65959208	65959209	chr1:65959209:A:G	rs79668322	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	66240746	66240747	chr1:66240747:C:T	rs4655832	C	T	C	Sox1.mouse_HMG_2	5	1	-	2.0914148654427915	2.0914148654427915	GTGATGAGCATTCAT
chr1	66241057	66241058	chr1:66241058:C:G	rs72924449	C	G	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	66265845	66265846	chr1:66265846:G:A	rs138803596	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	66319849	66319850	chr1:66319850:C:A	rs17427502	C	A	C	Sox1.mouse_HMG_2	7	1	-	4.398459217022096	4.241884862187995	AAGAATAGCATGCAC
chr1	66395372	66395373	chr1:66395373:A:G	rs12138854	A	G	A	Sox1.mouse_HMG_2	2	1	+	8.662547722674516	13.307950255690733	ATAACTGCCATTCAT
chr1	66449441	66449442	chr1:66449442:G:A	rs783435	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	66489341	66489342	chr1:66489342:T:C	rs17471563	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	66491001	66491002	chr1:66491002:G:A	rs9651195	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	66600227	66600228	chr1:66600228:G:A	rs10889634	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	66637348	66637349	chr1:66637349:C:T	rs17129226	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	66669416	66669417	chr1:66669417:G:A	rs7536634	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	67274408	67274409	chr1:67274409:G:A	rs11209032	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	67274924	67274925	chr1:67274925:C:T	rs72678511	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	67275572	67275573	chr1:67275573:C:A	rs4655532	C	A	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	67307126	67307127	chr1:67307127:C:T	rs11810249	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	67682669	67682670	chr1:67682670:T:C	rs520820	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.3230109959823753	-3.585743783332845	TTTACTTCCAGTCAT
chr1	67687365	67687366	chr1:67687366:A:G	chr1:67687366:A:G	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	67719550	67719551	chr1:67719551:T:C	rs1543859	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	67724986	67724987	chr1:67724987:C:T	rs495639	C	T	T	Sox1.mouse_HMG_2	0	1	-	2.7997676777092617	3.804003910344463	GTGTCTTCCATTCTT
chr1	67771469	67771470	chr1:67771470:C:T	rs79418367	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	67815386	67815387	chr1:67815387:C:T	rs780852710	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	67883049	67883050	chr1:67883050:T:G	chr1:67883050:T:G	T	G	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	67969568	67969569	chr1:67969569:A:T	rs114308094	A	T	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	68155078	68155079	chr1:68155079:G:A	rs3762371	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	68178852	68178853	chr1:68178853:C:G	rs752529276	C	G	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	68216763	68216764	chr1:68216764:T:C	rs12760857	T	C	T	Sox1.mouse_HMG_2	3	1	-	2.4463729729219716	-4.462381806393248	ATGAAAACCATTAAC
chr1	68285122	68285123	chr1:68285123:T:C	rs7513186	T	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	68346436	68346437	chr1:68346437:G:T	rs35399029	G	T	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	68591737	68591738	chr1:68591738:C:T	rs2473797	C	T	T	Sox1.mouse_HMG_2	8	1	+	5.483460103187123	-0.16096658719486345	ATGTCTAACAGTCAT
chr1	68917577	68917578	chr1:68917578:C:T	rs112222553	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	68975279	68975280	chr1:68975280:A:G	rs9436867	A	G	A	Sox1.mouse_HMG_2	7	1	+	4.038872596909364	3.3378177773682887	TTGAAAAATATTCAT
chr1	69249420	69249421	chr1:69249421:G:C	rs2249479	G	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	69576793	69576794	chr1:69576794:T:C	rs12084695	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	69879390	69879391	chr1:69879391:T:C	rs185163324	T	C	t	Sox1.mouse_HMG_2	4	1	-	4.856810215150329	-1.9646025540097432	TCCAATTTCATTCAT
chr1	69879411	69879412	chr1:69879412:G:C	rs2421306	G	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	70365343	70365344	chr1:70365344:C:T	rs71500608	C	T	t	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	70460152	70460153	chr1:70460153:G:C	rs74085265	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.141159313217504	-2.75928933724886	ATCACTTGCATTCTC
chr1	70553302	70553303	chr1:70553303:C:T	rs4233083	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	70628213	70628214	chr1:70628214:A:G	rs1334994	A	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	70819270	70819271	chr1:70819271:G:C	rs1327453	G	C	G	Sox1.mouse_HMG_2	8	1	-	6.33901579096051	0.6204811284248023	CTGGATATCAGTCAT
chr1	71033474	71033475	chr1:71033475:C:T	rs2300178	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	71106908	71106909	chr1:71106909:A:G	rs11209747	A	G	A	Sox1.mouse_HMG_2	0	1	-	4.285393635291979	4.551336829061412	TTGACTGGCATGCAC
chr1	71721780	71721781	chr1:71721781:T:G	rs1213556	T	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	71835284	71835285	chr1:71835285:A:G	rs522451	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	71861294	71861295	chr1:71861295:A:G	rs7541854	A	G	A	Sox1.mouse_HMG_2	11	1	-	4.485170480076241	-2.423584299238979	CTGTATGCCAGTCAC
chr1	72122435	72122436	chr1:72122436:A:G	rs12128707	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	72284816	72284817	chr1:72284817:A:G	rs11209943	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	72285450	72285451	chr1:72285451:C:T	rs3101337	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	73097080	73097081	chr1:73097081:A:G	rs12065149	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	73460888	73460889	chr1:73460889:T:C	rs496819	T	C	T	Sox1.mouse_HMG_2	9	1	-	6.666823575127421	-0.2419312041878	ATAAATTGCATTTAT
chr1	73710114	73710115	chr1:73710115:C:G	rs7412683	C	G	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	73727005	73727006	chr1:73727006:T:A	rs79855077	T	A	T	Sox1.mouse_HMG_2	1	1	+	5.880266585179755	1.2362742776865212	CTGAAAAACATTCTC
chr1	73802375	73802376	chr1:73802376:A:G	rs10493522	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	74620727	74620728	chr1:74620728:G:C	rs41289218	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	74791709	74791710	chr1:74791710:T:G	chr1:74791710:T:G	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	74791712	74791713	chr1:74791713:A:G	chr1:74791713:A:G	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	74811499	74811500	chr1:74811500:A:G	rs149840635	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	75335092	75335093	chr1:75335093:A:C	rs11163154	A	C	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	75431323	75431324	chr1:75431324:C:G	rs3914236	C	G	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	75473112	75473113	chr1:75473113:G:A	rs1867352	G	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	75579552	75579553	chr1:75579553:T:C	rs74091759	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	75589056	75589057	chr1:75589057:C:T	rs390796	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	75892700	75892701	chr1:75892701:C:T	rs5745515	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	76037580	76037581	chr1:76037581:A:T	rs4083965	A	T	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	76095846	76095847	chr1:76095847:G:A	rs289678	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	76417391	76417392	chr1:76417392:C:T	rs6691055	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	76995402	76995403	chr1:76995403:A:G	rs17099802	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	77038316	77038317	chr1:77038317:T:G	rs199693	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	77089795	77089796	chr1:77089796:C:T	rs169216	C	T	T	Sox1.mouse_HMG_2	2	1	-	4.5339489574172696	-0.11145357559894975	ACGAAAGACATTCAT
chr1	77094514	77094515	chr1:77094515:C:T	rs2069225	C	T	T	Sox1.mouse_HMG_2	12	1	+	7.438543915086076	2.765956811417823	GTGAACATCATTCAA
chr1	77171110	77171111	chr1:77171111:G:C	rs4399204	G	C	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	77292813	77292814	chr1:77292814:C:A	rs72677864	C	A	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	77642371	77642372	chr1:77642372:T:C	rs75797076	T	C	T	Sox1.mouse_HMG_2	13	1	-	9.806728437498053	4.860610749725406	TGGAATGCCATTCAT
chr1	78029047	78029048	chr1:78029048:G:T	rs7524504	G	T	G	Sox1.mouse_HMG_2	8	1	-	3.847585884158257	-1.0019109313538408	TTGACTAGCTGTCAT
chr1	78078540	78078541	chr1:78078541:A:G	rs143357884	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	78078561	78078562	chr1:78078562:C:T	rs74093209	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	78277320	78277321	chr1:78277321:T:A	rs71641333	T	A	T	Sox1.mouse_HMG_2	1	1	+	5.812462534659427	1.1684702271661926	ATGATTTTCATTCTT
chr1	79043423	79043424	chr1:79043424:T:C	rs6687262	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	79475700	79475701	chr1:79475701:C:T	rs3000155	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	79633531	79633532	chr1:79633532:C:T	rs11162765	C	T	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	79974078	79974079	chr1:79974079:G:A	rs10874103	G	A	G	Sox1.mouse_HMG_2	9	1	-	3.926767398887125	3.926767398887125	ATGAATAGCCTTTAA
chr1	79988878	79988879	chr1:79988879:C:T	rs10493633	C	T	C	Sox1.mouse_HMG_2	14	1	+	8.929475220259052	9.804087562981787	TTGAATTACAGTCTC
chr1	80048810	80048811	chr1:80048811:A:G	rs7549131	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	80257945	80257946	chr1:80257946:A:G	rs1418819	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.114356760320752	-3.7943980189944675	ACGAAGTGCATTCAA
chr1	80677402	80677403	chr1:80677403:T:C	rs17105337	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	80776377	80776378	chr1:80776378:A:T	rs6664492	A	T	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	80780464	80780465	chr1:80780465:T:C	rs12127218	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.116448124345706	-3.7049646448143645	CTCAATGACCTTCAT
chr1	80988132	80988133	chr1:80988133:T:C	rs1365523	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	81023521	81023522	chr1:81023522:A:G	rs7531507	A	G	G	Sox1.mouse_HMG_2	9	1	+	7.619808902614807	0.7110541232995866	GTGGATTACATTCAG
chr1	81155072	81155073	chr1:81155073:T:C	rs6682877	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.6003074206830954	-3.308447358632124	CTGAATGCCTTTCTA
chr1	81205777	81205778	chr1:81205778:T:A	rs6683111	T	A	A	Sox1.mouse_HMG_2	5	1	+	4.577007275729085	-2.3317475035861333	ATGGATACTATTCAT
chr1	81351953	81351954	chr1:81351954:T:G	rs1224814054	T	G	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	81371991	81371992	chr1:81371992:G:A	rs77659772	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	81464063	81464064	chr1:81464064:G:A	rs79377360	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	81478695	81478696	chr1:81478696:T:A	rs4450056	T	A	T	Sox1.mouse_HMG_2	6	1	-	7.768065646663985	6.927060211922588	GTGAATAGCATTAAG
chr1	81498716	81498717	chr1:81498717:A:C	chr1:81498717:A:C	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	81498753	81498754	chr1:81498754:C:G	rs146729420	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	81584819	81584820	chr1:81584820:G:A	rs75992300	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	81600939	81600940	chr1:81600940:G:A	rs4317851	G	A	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	81869505	81869506	chr1:81869506:G:A	rs1405497386	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	82109114	82109115	chr1:82109115:T:G	rs4970668	T	G	T	Sox1.mouse_HMG_2	13	1	-	8.310808818310173	1.9900928091808243	CTCAATGCCATTCAA
chr1	82244603	82244604	chr1:82244604:A:C	rs7540933	A	C	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	82502554	82502555	chr1:82502555:C:G	rs7544706	C	G	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	82567995	82567996	chr1:82567996:A:G	rs145884113	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	82706779	82706780	chr1:82706780:T:C	rs9324199	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	82725594	82725595	chr1:82725595:A:G	rs17109004	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.755363232508392	-2.153391546806828	TTGAATATCAGCCAA
chr1	83164131	83164132	chr1:83164132:T:C	rs401537	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	83251936	83251937	chr1:83251937:T:C	rs9433144	T	C	-	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	83624141	83624142	chr1:83624142:T:C	rs61483809	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	83976164	83976165	chr1:83976165:T:A	rs11163877	T	A	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	84090839	84090840	chr1:84090840:T:C	rs12405120	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	84366436	84366437	chr1:84366437:T:G	rs6669915	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	84416608	84416609	chr1:84416609:T:C	rs7538902	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	84505066	84505067	chr1:84505067:G:A	rs59742045	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	84561159	84561160	chr1:84561160:T:G	rs2994955	T	G	T	Sox1.mouse_HMG_2	2	1	+	3.721424355156429	10.61811868677914	ATTAAGAACATTCAT
chr1	84847663	84847664	chr1:84847664:G:T	rs12083676	G	T	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	84953591	84953592	chr1:84953592:T:A	rs72718785	T	A	T	Sox1.mouse_HMG_2	13	1	-	2.3394328822044876	-0.8549306709538048	CTGTATAGCCTTCAT
chr1	85035368	85035369	chr1:85035369:T:C	rs6576743	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	85449450	85449451	chr1:85449451:T:C	rs648310	T	C	T	Sox1.mouse_HMG_2	14	1	+	9.055741287833554	8.18112894511082	ATGAATAAGAGTCAT
chr1	85449465	85449466	chr1:85449466:A:G	rs659070	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	85544414	85544415	chr1:85544415:C:T	rs1524005	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	86061592	86061593	chr1:86061593:T:C	rs78319869	T	C	t	Sox1.mouse_HMG_2	11	1	+	3.479540060228696	-3.4292147190865236	AAGAATTCCACTCAA
chr1	86067959	86067960	chr1:86067960:A:G	rs138671401	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	86192627	86192628	chr1:86192628:G:T	rs72718033	G	T	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	86429630	86429631	chr1:86429631:G:C	rs1413429	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	86502900	86502901	chr1:86502901:C:G	rs2791480	C	G	c	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	86679046	86679047	chr1:86679047:A:C	rs113499264	A	C	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	86827230	86827231	chr1:86827231:C:T	rs6656882	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.609822772734145	-2.0346039176478405	ATGACTGACATTATT
chr1	86872269	86872270	chr1:86872270:G:T	rs2753282	G	T	G	Sox1.mouse_HMG_2	11	1	+	6.443609045049254	13.352363824364472	TTGACTATCATGCAT
chr1	87259246	87259247	chr1:87259247:C:T	rs4279831	C	T	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	87511596	87511597	chr1:87511597:A:T	rs2150748	A	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	87614114	87614115	chr1:87614115:A:G	rs551461782	A	G	a	Sox1.mouse_HMG_2	3	1	+	3.3839090516560257	-3.524845727659193	AGTAATGTCATTCAT
chr1	87767062	87767063	chr1:87767063:T:G	rs2436988	T	G	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	87783300	87783301	chr1:87783301:T:C	rs10922505	T	C	T	Sox1.mouse_HMG_2	9	1	-	9.495173632576021	2.5864188532608017	GTAACTAACATTCAT
chr1	88043106	88043107	chr1:88043107:A:G	rs12568243	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	88196216	88196217	chr1:88196217:T:C	rs6428638	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	88519893	88519894	chr1:88519894:A:G	rs6678522	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	88883696	88883697	chr1:88883697:G:A	rs6675893	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	89070748	89070749	chr1:89070749:T:C	rs876271	T	C	T	Sox1.mouse_HMG_2	0	1	+	4.502281801494212	4.768224995263646	TTGACTTGCACTCAA
chr1	89167170	89167171	chr1:89167171:A:G	rs616098	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	89198286	89198287	chr1:89198287:G:A	rs2224875	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	89313315	89313316	chr1:89313316:C:G	rs76673102	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	89466329	89466330	chr1:89466330:C:T	rs34143251	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	89548360	89548361	chr1:89548361:A:G	rs12409338	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	89842541	89842542	chr1:89842542:A:C	rs10922733	A	C	C	Sox1.mouse_HMG_2	7	1	+	4.773317956668927	4.376633236000857	TTGTATTACATTCTC
chr1	89842557	89842558	chr1:89842558:G:A	rs72716313	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	89873977	89873978	chr1:89873978:A:G	rs185368593	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	90347649	90347650	chr1:90347650:T:C	rs951889200	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.980958383950533	-3.866983194329748	CTCAAGAGCATTCAC
chr1	90408970	90408971	chr1:90408971:C:T	rs71666253	C	T	C	Sox1.mouse_HMG_2	0	1	-	5.406566694291521	6.410802926926722	GTGAGTTGCAGTCAT
chr1	90563149	90563150	chr1:90563150:G:A	rs7546770	G	A	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	90762474	90762475	chr1:90762475:C:T	rs17131164	C	T	T	Sox1.mouse_HMG_2	9	1	-	5.2444767635698115	12.15323154288503	ATGAATAGCGTTTAT
chr1	90778785	90778786	chr1:90778786:C:G	rs6676886	C	G	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	91226716	91226717	chr1:91226717:G:C	rs79561888	G	C	G	Sox1.mouse_HMG_2	7	1	-	6.711793890965893	6.407423792092887	ATGACTTCCATTCCC
chr1	91245789	91245790	chr1:91245790:A:C	rs1822057	A	C	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	91452419	91452420	chr1:91452420:T:G	rs6683496	T	G	G	Sox1.mouse_HMG_2	13	1	-	2.958180714947888	-3.362535294181459	AGGCATGCCATTCAC
chr1	91622747	91622748	chr1:91622748:T:A	rs17569909	T	A	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	91697772	91697773	chr1:91697773:G:A	rs2810886	G	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	91697785	91697786	chr1:91697786:T:C	rs2765889	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.499633811471457	-3.4091209678437626	ATGACTTGCATGCTT
chr1	91708238	91708239	chr1:91708239:T:C	rs284877	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	91913276	91913277	chr1:91913277:A:G	rs60229800	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	91913285	91913286	chr1:91913286:T:C	rs2770186	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	91913709	91913710	chr1:91913710:T:C	rs1019375551	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	92184771	92184772	chr1:92184772:T:C	rs143556017	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	92695344	92695345	chr1:92695345:T:C	rs2391199	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	92950584	92950585	chr1:92950585:A:C	rs11164843	A	C	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	93080257	93080258	chr1:93080258:A:C	chr1:93080258:A:C	A	C	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	93373344	93373345	chr1:93373345:A:C	rs35915989	A	C	a	Sox1.mouse_HMG_2	5	1	-	5.035935353356226	-1.8728194259589936	GTGACTTCCATTTTT
chr1	93615439	93615440	chr1:93615440:G:A	rs798218	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	93615466	93615467	chr1:93615467:T:C	rs12757325	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	93616037	93616038	chr1:93616038:A:T	rs141362372	A	T	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	93701374	93701375	chr1:93701375:G:A	rs149223555	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	93775622	93775623	chr1:93775623:A:G	rs72723138	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	94106713	94106714	chr1:94106714:C:G	rs1191236	C	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	94254296	94254297	chr1:94254297:T:C	rs17111259	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	94263531	94263532	chr1:94263532:C:A	rs11165101	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	94281606	94281607	chr1:94281607:G:A	rs568989233	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	94335512	94335513	chr1:94335513:A:G	rs1765636	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	94591512	94591513	chr1:94591513:A:G	rs36043927	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	94619701	94619702	chr1:94619702:C:T	rs10782983	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	94634990	94634991	chr1:94634991:T:C	chr1:94634991:T:C	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	94641697	94641698	chr1:94641698:T:C	rs2996284	T	C	t	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	94661279	94661280	chr1:94661280:T:C	rs80128488	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	94684785	94684786	chr1:94684786:C:A	rs12750395	C	A	c	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	94737655	94737656	chr1:94737656:A:G	rs2933912	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	94783749	94783750	chr1:94783750:C:T	rs12743267	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	94783851	94783852	chr1:94783852:G:A	rs11581918	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	94783875	94783876	chr1:94783876:G:A	rs11581919	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	94818673	94818674	chr1:94818674:T:C	rs3890118	T	C	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	94860731	94860732	chr1:94860732:C:T	rs9432394	C	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	94909187	94909188	chr1:94909188:C:T	rs75059168	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	95111353	95111354	chr1:95111354:C:A	rs12565591	C	A	A	Sox1.mouse_HMG_2	8	1	+	3.6307418185195113	-1.2187549969925875	ATGAAAGACATTTAC
chr1	95227199	95227200	chr1:95227200:A:G	rs11165346	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	95229213	95229214	chr1:95229214:G:A	rs11165348	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	95279778	95279779	chr1:95279779:A:G	rs2039615	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	95470474	95470475	chr1:95470475:A:G	rs1577862	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	95770585	95770586	chr1:95770586:A:G	rs10874945	A	G	a	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	96190650	96190651	chr1:96190651:C:T	rs321567	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	96361558	96361559	chr1:96361559:G:C	rs969094	G	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	96361568	96361569	chr1:96361569:G:C	rs325948	G	C	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	96819282	96819283	chr1:96819283:G:C	rs603231	G	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	97064125	97064126	chr1:97064126:G:T	rs148558585	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	97192770	97192771	chr1:97192771:C:A	rs72967809	C	A	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	97368462	97368463	chr1:97368463:C:T	rs1879371	C	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	97907048	97907049	chr1:97907049:G:A	rs953038149	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	98197404	98197405	chr1:98197405:T:C	rs698994	T	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	98268008	98268009	chr1:98268009:G:A	rs76596642	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	98392482	98392483	chr1:98392483:A:T	rs4950123	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	98653346	98653347	chr1:98653347:C:G	rs147382099	C	G	C	Sox1.mouse_HMG_2	2	1	-	2.9291716737574656	-2.4634452610889714	ATGAAGTACAATCAT
chr1	98733627	98733628	chr1:98733628:G:A	rs151234770	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.542067045881636	1.8976403554996493	TTGAAAGGCATTCAT
chr1	98733650	98733651	chr1:98733651:A:G	rs9434444	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	98749445	98749446	chr1:98749446:A:T	rs67694167	A	T	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	98967820	98967821	chr1:98967821:C:T	rs6677557	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	99079324	99079325	chr1:99079325:G:C	rs12731281	G	C	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	99179128	99179129	chr1:99179129:A:G	rs643193	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	99266645	99266646	chr1:99266646:C:T	rs712895	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	99480600	99480601	chr1:99480601:A:G	rs4430354	A	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	99515748	99515749	chr1:99515749:A:G	rs947508450	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	99546666	99546667	chr1:99546667:C:T	rs1361380	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	99801601	99801602	chr1:99801602:T:G	rs958897	T	G	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	99956668	99956669	chr1:99956669:T:C	rs11166380	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	100785907	100785908	chr1:100785908:G:C	rs12094357	G	C	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	100801454	100801455	chr1:100801455:G:A	rs114820491	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	100831041	100831042	chr1:100831042:A:G	rs61780265	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	100891899	100891900	chr1:100891900:G:C	rs188829064	G	C	G	Sox1.mouse_HMG_2	2	1	+	5.307164667895296	-0.08545226695114089	TTGGCTTACATTCAG
chr1	100931186	100931187	chr1:100931187:G:T	rs11579723	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	100941471	100941472	chr1:100941472:A:T	rs6698798	A	T	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	101130740	101130741	chr1:101130741:C:G	chr1:101130741:C:G	C	G	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	101154546	101154547	chr1:101154547:A:G	rs76570915	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	101191125	101191126	chr1:101191126:A:C	rs34693270	A	C	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	101191132	101191133	chr1:101191133:C:T	rs74106749	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	101203319	101203320	chr1:101203320:T:C	rs7542187	T	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	101282409	101282410	chr1:101282410:A:G	rs114751910	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	101402809	101402810	chr1:101402810:C:G	rs56109012	C	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	101402822	101402823	chr1:101402823:T:C	rs56686553	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.369515267419454	-0.5766024203531938	TTTAATTTCAGTCAC
chr1	101486136	101486137	chr1:101486137:T:C	rs1777871	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	101738425	101738426	chr1:101738426:G:A	rs12126242	G	A	G	Sox1.mouse_HMG_2	11	1	+	3.7176700363127764	3.7176700363127764	ATGAATAACATGAAT
chr1	101975082	101975083	chr1:101975083:A:G	rs945645	A	G	A	Sox1.mouse_HMG_2	11	1	-	2.9557004828776736	-3.953054296437547	ATGATTTACTTTCAT
chr1	102586352	102586353	chr1:102586353:T:A	rs965598	T	A	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	103199519	103199520	chr1:103199520:T:C	rs4360545	T	C	C	Sox1.mouse_HMG_2	10	1	+	3.5715984309466546	-3.276343147333627	CTAAATATCATACAC
chr1	103532736	103532737	chr1:103532737:C:A	rs12139400	C	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	104291531	104291532	chr1:104291532:T:C	rs4463678	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	104862575	104862576	chr1:104862576:C:T	rs12062067	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	106278832	106278833	chr1:106278833:C:T	rs11184835	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	106375751	106375752	chr1:106375752:T:G	rs7516671	T	G	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	106413436	106413437	chr1:106413437:A:C	rs12067715	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	107263004	107263005	chr1:107263005:A:G	rs12145076	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	107529810	107529811	chr1:107529811:T:C	rs1016662700	T	C	T	Sox1.mouse_HMG_2	6	1	-	2.7339967935035165	1.293819371634879	GGGATTAGCATTCAA
chr1	107596902	107596903	chr1:107596903:G:A	rs17536557	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	107682832	107682833	chr1:107682833:T:A	rs2504455	T	A	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	108467607	108467608	chr1:108467608:G:A	rs201618980	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	108694260	108694261	chr1:108694261:T:C	rs534994964	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	108842840	108842841	chr1:108842841:A:C	rs12075148	A	C	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	108858394	108858395	chr1:108858395:A:C	rs6604132	A	C	C	Sox1.mouse_HMG_2	7	1	+	7.335681712210136	6.938996991542067	AAGAATAACATTTAC
chr1	109133304	109133305	chr1:109133305:A:C	rs17038454	A	C	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	109143247	109143248	chr1:109143248:C:A	rs35742436	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	109198893	109198894	chr1:109198894:A:C	rs10858081	A	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	109201459	109201460	chr1:109201460:C:G	rs976839325	C	G	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	109257457	109257458	chr1:109257458:A:G	rs79551419	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	109292540	109292541	chr1:109292541:C:T	rs41306199	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	109425787	109425788	chr1:109425788:A:C	rs3820667	A	C	A	Sox1.mouse_HMG_2	14	1	+	4.774541648782303	5.217638670742253	TTGAAAACCATTCTA
chr1	109736979	109736980	chr1:109736980:T:G	rs2234696	T	G	T	Sox1.mouse_HMG_2	13	1	-	5.305289964604751	-1.0154260445245966	ATGAATAGCACTTAT
chr1	109739318	109739319	chr1:109739319:G:A	rs10735234	G	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	109797205	109797206	chr1:109797206:A:G	rs6659821	A	G	G	Sox1.mouse_HMG_2	14	1	-	4.110850746752547	3.2362384040298107	GTAAAAATCATTCAT
chr1	109827117	109827118	chr1:109827118:A:C	rs6537880	A	C	A	Sox1.mouse_HMG_2	4	1	+	5.062083626166121	2.6800225582992	GTGAATTACAGTTTT
chr1	110011841	110011842	chr1:110011842:A:C	rs201542768	A	C	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	110153580	110153581	chr1:110153581:A:G	rs12742838	A	G	a	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	110190524	110190525	chr1:110190525:T:G	chr1:110190525:T:G	T	G	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	110300489	110300490	chr1:110300490:T:A	rs12743266	T	A	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	110340004	110340005	chr1:110340005:A:G	rs61746123	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	111193234	111193235	chr1:111193235:C:G	rs72979804	C	G	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	111253060	111253061	chr1:111253061:G:A	rs4839109	G	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	111384186	111384187	chr1:111384187:T:A	rs17027572	T	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	111585619	111585620	chr1:111585620:T:C	rs7516113	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	111605144	111605145	chr1:111605145:C:T	rs2247378	C	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	111723969	111723970	chr1:111723970:T:C	rs2447945	T	C	T	Sox1.mouse_HMG_2	10	1	-	2.8915708067880392	6.986914869343223	CTGACTTGCAATCTT
chr1	111827983	111827984	chr1:111827984:A:G	rs1904200	A	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	111932926	111932927	chr1:111932927:C:T	rs11102357	C	T	C	Sox1.mouse_HMG_2	8	1	+	12.511358389623078	6.866931699241093	TTGACTTTCATTCAT
chr1	111996438	111996439	chr1:111996439:A:G	rs2366125	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	112012776	112012777	chr1:112012777:A:G	rs56131862	A	G	a	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	112012800	112012801	chr1:112012801:G:A	rs12562249	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.918016785365782	-0.7264099050162044	CTGAATGCCCTTCTT
chr1	112143776	112143777	chr1:112143777:C:T	rs76618552	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	112179292	112179293	chr1:112179293:G:A	rs11102404	G	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	112234246	112234247	chr1:112234247:C:T	rs6671600	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	112620513	112620514	chr1:112620514:A:C	rs116226179	A	C	A	Sox1.mouse_HMG_2	6	1	+	3.339653497739891	-1.0127615049484744	TTGAACACCAGTCTT
chr1	112691556	112691557	chr1:112691557:C:T	rs3795819	C	T	T	Sox1.mouse_HMG_2	9	1	+	5.1764231409966595	5.1764231409966595	CTGACTTCCCTTCAG
chr1	112889821	112889822	chr1:112889822:C:T	rs10158127	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	112907382	112907383	chr1:112907383:A:C	rs1936311	A	C	C	Sox1.mouse_HMG_2	11	1	-	6.414113296406124	-0.4946414829090969	CTGACCAACATTCAG
chr1	113256100	113256101	chr1:113256101:G:A	rs773612	G	A	G	Sox1.mouse_HMG_2	13	1	+	3.2884005455375913	8.23451823331024	GTGAATGACAATCGT
chr1	113303773	113303774	chr1:113303774:A:G	rs773591	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	113608983	113608984	chr1:113608984:G:A	rs4838994	G	A	G	Sox1.mouse_HMG_2	14	1	+	4.873474048796345	4.708832800901397	CAAAATTGCATTCAG
chr1	114040634	114040635	chr1:114040635:A:T	rs10776777	A	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	114322720	114322721	chr1:114322721:G:A	rs668800	G	A	A	Sox1.mouse_HMG_2	7	1	-	4.086701841126036	3.6257573874189286	GTGAATACGATTCCT
chr1	114581045	114581046	chr1:114581046:C:T	rs74115242	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	115063469	115063470	chr1:115063470:G:C	rs150639153	G	C	G	Sox1.mouse_HMG_2	12	1	-	3.374849025979153	-3.5255996244872114	CTGATTTACATTCGC
chr1	115091680	115091681	chr1:115091681:G:A	rs79372788	G	A	G	Sox1.mouse_HMG_2	7	1	-	2.1596110700081135	1.6986666163010065	ATGTATACCATCCAG
chr1	115171116	115171117	chr1:115171117:T:C	rs1573184	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	115217965	115217966	chr1:115217966:T:C	rs1294382	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	115394649	115394650	chr1:115394650:T:C	rs7525017	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.895347791608232	-2.9260649775518393	GTGAATAAGTTTCAT
chr1	115446091	115446092	chr1:115446092:T:C	rs508813	T	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	115497260	115497261	chr1:115497261:G:A	rs112974957	G	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	115501732	115501733	chr1:115501733:C:A	rs1543594	C	A	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	115714626	115714627	chr1:115714627:A:G	rs80144819	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.8175165485245675	3.8132803158893647	AGGAATGACATTCCT
chr1	115814917	115814918	chr1:115814918:G:A	rs77054347	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	115893521	115893522	chr1:115893522:A:G	rs2131440	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	115924112	115924113	chr1:115924113:A:C	rs7512489	A	C	A	Sox1.mouse_HMG_2	3	1	+	5.1764231409966595	-1.7323316383185614	CTGACTTCCCTTCAG
chr1	115979743	115979744	chr1:115979744:C:T	rs1689117	C	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	116115571	116115572	chr1:116115572:T:C	rs566912155	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.350629202980756	-4.497312375299526	GGGAATGACATACAC
chr1	116115582	116115583	chr1:116115583:T:A	rs77199525	T	A	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	116169389	116169390	chr1:116169390:C:T	chr1:116169390:C:T	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	116175401	116175402	chr1:116175402:A:G	rs2208363	A	G	A	Sox1.mouse_HMG_2	13	1	-	4.44799628840633	1.3216438324352753	GGGACTACCATTCTG
chr1	116286913	116286914	chr1:116286914:A:G	rs114999778	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	116376896	116376897	chr1:116376897:C:T	rs10924073	C	T	T	Sox1.mouse_HMG_2	12	1	+	9.352825108394631	4.680238004726376	CTAAATTGCATTCAA
chr1	116510599	116510600	chr1:116510600:T:C	chr1:116510600:T:C	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	116744090	116744091	chr1:116744091:A:G	rs10923141	A	G	A	Sox1.mouse_HMG_2	3	1	+	3.0207354488854965	-3.8880193304297244	GTGAATAAGATGCAC
chr1	116817723	116817724	chr1:116817724:C:T	rs145663852	C	T	C	Sox1.mouse_HMG_2	1	1	-	3.594548885751152	3.8990200648297275	GGGAATCACAGTCAC
chr1	116879268	116879269	chr1:116879269:C:T	rs11590292	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	116879298	116879299	chr1:116879299:A:G	rs1016392001	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	116879301	116879302	chr1:116879302:A:T	chr1:116879302:A:T	A	T	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	116948037	116948038	chr1:116948038:C:T	rs75805237	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	116991024	116991025	chr1:116991025:C:T	rs79634644	C	T	C	Sox1.mouse_HMG_2	4	1	+	2.961275025379152	-1.4780766759139987	ATGACTGGCACTCTT
chr1	116991042	116991043	chr1:116991043:T:C	rs149646098	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	117001793	117001794	chr1:117001794:C:T	rs374341961	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	117170006	117170007	chr1:117170007:T:A	rs6684046	T	A	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	117181956	117181957	chr1:117181957:G:A	rs116793883	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	117487204	117487205	chr1:117487205:A:G	rs12407224	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	117507739	117507740	chr1:117507740:A:G	rs2790033	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	117820807	117820808	chr1:117820808:G:A	rs2104044	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	117930415	117930416	chr1:117930416:G:C	rs1321663	G	C	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	118256606	118256607	chr1:118256607:C:T	rs12081441	C	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	118550015	118550016	chr1:118550016:T:C	rs10923607	T	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	118550017	118550018	chr1:118550018:T:C	rs10923608	T	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	118556422	118556423	chr1:118556423:T:C	rs140521991	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	118565002	118565003	chr1:118565003:C:G	rs12128952	C	G	C	Sox1.mouse_HMG_2	0	1	+	15.308244422920197	14.972884396003355	CTGAATACCATTCAG
chr1	118949517	118949518	chr1:118949518:T:G	rs111282751	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	118954530	118954531	chr1:118954531:G:C	rs12143789	G	C	G	Sox1.mouse_HMG_2	5	1	+	3.6498345896688917	3.6498345896688917	ATCAAGAGCATTCAC
chr1	119011782	119011783	chr1:119011783:T:C	rs77313534	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	119085028	119085029	chr1:119085029:G:A	chr1:119085029:G:A	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	119261558	119261559	chr1:119261559:A:G	rs56243366	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	119372084	119372085	chr1:119372085:G:T	rs116269557	G	T	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	119792229	119792230	chr1:119792230:G:A	rs12747679	G	A	g	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	119875875	119875876	chr1:119875876:G:T	rs6683791	G	T	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	120130080	120130081	chr1:120130081:A:C	rs9428185	A	C	A	Sox1.mouse_HMG_2	11	1	+	3.860413655630725	3.860413655630725	ATAAATTCCATACAC
chr1	121006988	121006989	chr1:121006989:G:T	rs1168043138	G	T	g	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	121278269	121278270	chr1:121278270:G:A	rs1353738454	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	121293591	121293592	chr1:121293592:G:A	rs587635285	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	121485183	121485184	chr1:121485184:G:T	rs2319971	G	T	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	125080226	125080227	chr1:125080227:C:T	rs1263934055	C	T	.	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	125080541	125080542	chr1:125080542:A:G	rs1256050080	A	G	.	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	125080879	125080880	chr1:125080880:C:A	rs1219494200	C	A	.	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	125080881	125080882	chr1:125080882:T:C	rs1320009693	T	C	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	125150071	125150072	chr1:125150072:C:T	rs917215021	C	T	.	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	125151718	125151719	chr1:125151719:G:A	rs1013232526	G	A	.	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	143232211	143232212	chr1:143232212:A:T	rs1308935306	A	T	.	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	143264311	143264312	chr1:143264312:T:A	chr1:143264312:T:A	T	A	.	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	145281454	145281455	chr1:145281455:G:T	rs587695384	G	T	.	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	145891366	145891367	chr1:145891367:G:A	rs77450491	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	147111985	147111986	chr1:147111986:G:A	rs6686480	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	147111986	147111987	chr1:147111987:A:T	rs6700783	A	T	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	147171583	147171584	chr1:147171584:C:G	rs72708503	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	147177484	147177485	chr1:147177485:A:G	rs7525703	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	147177504	147177505	chr1:147177505:A:C	rs2883434	A	C	A	Sox1.mouse_HMG_2	1	1	-	4.13609984090036	-0.8123636456714486	TTGAAAAACATTTAC
chr1	147379857	147379858	chr1:147379858:G:A	rs12041474	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	148086443	148086444	chr1:148086444:T:C	rs587738573	T	C	.	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	148279411	148279412	chr1:148279412:G:A	rs187803347	G	A	.	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	148522952	148522953	chr1:148522953:G:A	rs1425948893	G	A	g	Sox1.mouse_HMG_2	10	1	+	3.35843690524323	-0.7369071573119536	GCGAATTTCAGTCTC
chr1	150109579	150109580	chr1:150109580:T:C	chr1:150109580:T:C	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.933264280505638	-1.9754904988095814	TGCAATAACATTCAA
chr1	150213279	150213280	chr1:150213280:T:C	rs73009583	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	150269788	150269789	chr1:150269789:G:C	rs3754048	G	C	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	150278579	150278580	chr1:150278580:G:A	rs11584761	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	150477727	150477728	chr1:150477728:T:C	rs12136802	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	150660602	150660603	chr1:150660603:A:G	rs4970924	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	150806924	150806925	chr1:150806925:G:A	rs12746973	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	150836639	150836640	chr1:150836640:C:T	rs10305695	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	150863962	150863963	chr1:150863963:T:C	rs12406660	T	C	t	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	151027386	151027387	chr1:151027387:A:G	rs55717234	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.7093639074639215	-0.9346284000293127	ATGCATAACATGCAT
chr1	151639650	151639651	chr1:151639651:C:T	rs897535920	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	151844241	151844242	chr1:151844242:T:C	rs7536659	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	152000033	152000034	chr1:152000034:T:C	rs2999558	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	152185793	152185794	chr1:152185794:A:G	rs75408989	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	152688269	152688270	chr1:152688270:A:T	rs1332509	A	T	-	Sox1.mouse_HMG_2	11	1	-	3.139729517147166	-3.7690252621680544	CTTAATAACAGTCTC
chr1	152699781	152699782	chr1:152699782:A:G	rs16834340	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	152708243	152708244	chr1:152708244:A:G	rs12033945	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	152718890	152718891	chr1:152718891:A:G	rs7545543	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.1262596469661235	-2.7824951323490974	CACAATTGCATTCAG
chr1	153399518	153399519	chr1:153399519:A:T	rs61803109	A	T	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	153452531	153452532	chr1:153452532:T:C	rs6700785	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	153536519	153536520	chr1:153536520:T:G	rs2480695	T	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	153912784	153912785	chr1:153912785:C:A	rs4845584	C	A	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	154291752	154291753	chr1:154291753:G:A	rs1760800	G	A	A	Sox1.mouse_HMG_2	0	1	-	4.002281412177395	3.7363382184079623	CTGAATAACTGTCTT
chr1	154407942	154407943	chr1:154407943:C:A	rs57569414	C	A	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	154635437	154635438	chr1:154635438:G:A	rs9427108	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	154720527	154720528	chr1:154720528:T:C	rs77510509	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	154768880	154768881	chr1:154768881:T:C	rs56033137	T	C	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	154822556	154822557	chr1:154822557:T:C	rs56744813	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	154851853	154851854	chr1:154851854:C:A	rs1218554	C	A	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	154890475	154890476	chr1:154890476:C:T	rs11264280	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	154935781	154935782	chr1:154935782:C:A	rs11581175	C	A	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	154935783	154935784	chr1:154935784:G:A	rs115965048	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	155063662	155063663	chr1:155063663:A:T	rs114857607	A	T	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	155231443	155231444	chr1:155231444:G:A	rs1045253	G	A	a	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	155531941	155531942	chr1:155531942:A:T	rs16836867	A	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	155718788	155718789	chr1:155718789:C:A	rs821551	C	A	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	155873986	155873987	chr1:155873987:A:G	rs822515	A	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	156003635	156003636	chr1:156003636:G:C	rs12116925	G	C	G	Sox1.mouse_HMG_2	2	1	+	2.34015406778276	-3.052462867063678	CTGACTCACCTTCAC
chr1	156106773	156106774	chr1:156106774:G:T	rs1318893578	G	T	G	Sox1.mouse_HMG_2	2	1	+	3.903176201998182	-2.9935181296245306	CTGAATTTCCTTCTG
chr1	156130347	156130348	chr1:156130348:T:C	rs508641	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	156464910	156464911	chr1:156464911:G:T	rs1050316	G	T	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	156590709	156590710	chr1:156590710:A:G	rs4661188	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	156655779	156655780	chr1:156655780:T:C	rs10796963	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	157143236	157143237	chr1:157143237:G:T	rs7544727	G	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	157238137	157238138	chr1:157238138:G:T	rs111385417	G	T	g	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	157310808	157310809	chr1:157310809:G:T	rs7536111	G	T	N	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	157514662	157514663	chr1:157514663:G:A	rs3845586	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	157618601	157618602	chr1:157618602:C:T	rs2777970	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	157705206	157705207	chr1:157705207:G:T	rs2317230	G	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	157775993	157775994	chr1:157775994:T:C	rs185904790	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	157962308	157962309	chr1:157962309:C:G	rs145422725	C	G	C	Sox1.mouse_HMG_2	14	1	+	1.9434693471146904	1.6650135730496878	CTGGCTCCCATTCAC
chr1	158248579	158248580	chr1:158248580:C:G	rs16840031	C	G	.	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	158432702	158432703	chr1:158432703:G:A	rs12136971	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	158432724	158432725	chr1:158432725:C:T	rs12144696	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	158495150	158495151	chr1:158495151:C:T	rs1259002340	C	T	C	Sox1.mouse_HMG_2	13	1	+	3.6046539869575756	6.7310064429286305	ATGAATAGCATTGCT
chr1	158733131	158733132	chr1:158733132:G:A	rs35512491	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	158841676	158841677	chr1:158841677:T:C	rs59769927	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	159010739	159010740	chr1:159010740:G:A	rs856062	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	159010743	159010744	chr1:159010744:C:T	rs12756557	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	159016357	159016358	chr1:159016358:C:T	chr1:159016358:C:T	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	159261978	159261979	chr1:159261979:T:A	rs72633670	T	A	T	Sox1.mouse_HMG_2	11	1	+	3.9848097898381347	-2.9239449894770853	AGGACTGGCAGTCAA
chr1	159580202	159580203	chr1:159580203:A:T	rs2166587	A	T	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	159748612	159748613	chr1:159748613:C:T	rs12064000	C	T	C	Sox1.mouse_HMG_2	6	1	-	3.8364779555238893	5.276655377392529	CTGAAAGACATTTAT
chr1	159882529	159882530	chr1:159882530:C:T	rs6656176	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	159895999	159896000	chr1:159896000:G:A	rs6660528	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	160017712	160017713	chr1:160017713:T:C	rs73019671	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	160031157	160031158	chr1:160031158:C:A	rs35060029	C	A	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	160077783	160077784	chr1:160077784:C:G	rs60703279	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	160137708	160137709	chr1:160137709:T:G	rs77654650	T	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	160179612	160179613	chr1:160179613:G:A	rs141674964	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	160339826	160339827	chr1:160339827:C:A	rs140756370	C	A	C	Sox1.mouse_HMG_2	0	1	-	5.2301366047545645	5.2995534379019755	GGAAATTTCATTCAT
chr1	160359013	160359014	chr1:160359014:G:A	rs12724113	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	160722753	160722754	chr1:160722754:T:G	rs570901	T	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	160723761	160723762	chr1:160723762:T:C	rs72708901	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	160726913	160726914	chr1:160726914:G:A	rs116080648	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.0192180232554113	-1.6261845097608065	TGGAAATACATTCAC
chr1	160726933	160726934	chr1:160726934:G:A	chr1:160726934:G:A	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	160726942	160726943	chr1:160726943:C:T	rs116121332	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	160726944	160726945	chr1:160726945:C:T	rs138824234	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	160858155	160858156	chr1:160858156:T:C	rs12037740	T	C	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	160877273	160877274	chr1:160877274:G:A	rs17387157	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	161041564	161041565	chr1:161041565:G:C	rs2073656	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	161222720	161222721	chr1:161222721:C:G	rs5085	C	G	C	Sox1.mouse_HMG_2	2	1	-	8.071846045883875	2.6792291110374364	TTGAATTTCAGTCTC
chr1	161382997	161382998	chr1:161382998:C:G	rs115144569	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	161402287	161402288	chr1:161402288:C:T	rs58514620	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	161610474	161610475	chr1:161610475:C:G	rs111340912	C	G	C	Sox1.mouse_HMG_2	8	1	+	5.913873493161096	0.19533883062538748	CTGCATTACATTCTT
chr1	161621054	161621055	chr1:161621055:A:C	rs144626514	A	C	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	161730440	161730441	chr1:161730441:T:C	rs1503809	T	C	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	161921765	161921766	chr1:161921766:A:C	rs6687226	A	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	161986013	161986014	chr1:161986014:C:T	rs2341465	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	162093232	162093233	chr1:162093233:G:A	rs1337062	G	A	g	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	162142291	162142292	chr1:162142292:T:C	rs59127492	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	162298332	162298333	chr1:162298333:A:G	rs12128479	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	162305937	162305938	chr1:162305938:A:G	rs1396224	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	162306283	162306284	chr1:162306284:G:A	rs2661809	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	162446967	162446968	chr1:162446968:C:T	rs469881	C	T	T	Sox1.mouse_HMG_2	0	1	+	6.699002188950137	6.433058995180706	CTAAATTACATTTAT
chr1	162711360	162711361	chr1:162711361:T:G	rs4559477	T	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	162916576	162916577	chr1:162916577:T:A	rs79274705	T	A	T	Sox1.mouse_HMG_2	9	1	-	4.447620999192374	-2.461133780122847	CAGGATATCATTCAT
chr1	162943797	162943798	chr1:162943798:G:A	rs115229609	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	163162612	163162613	chr1:163162613:G:C	rs114041116	G	C	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	163565492	163565493	chr1:163565493:T:C	rs2486834	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	163697456	163697457	chr1:163697457:G:A	rs16858383	G	A	A	Sox1.mouse_HMG_2	8	1	-	5.037930165911606	-0.6064965244703803	CTGAATTACAGACAA
chr1	163759083	163759084	chr1:163759084:A:G	rs10917840	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	163870845	163870846	chr1:163870846:C:T	rs78257712	C	T	-	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	164420114	164420115	chr1:164420115:G:A	rs116018319	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	164564365	164564366	chr1:164564366:C:T	rs8179321	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	164564588	164564589	chr1:164564589:T:C	rs79753189	T	C	T	Sox1.mouse_HMG_2	13	1	+	5.101809536302961	1.975457080331907	GTGCATAACATTCTA
chr1	164666074	164666075	chr1:164666075:C:T	rs77335953	C	T	C	Sox1.mouse_HMG_2	0	1	-	2.0218693816237874	3.0261056142589897	GTGCATACCATTCCC
chr1	164913495	164913496	chr1:164913496:G:T	rs4347190	G	T	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	165034224	165034225	chr1:165034225:C:T	rs11589386	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	165192525	165192526	chr1:165192526:A:G	rs989335	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	165514362	165514363	chr1:165514363:C:A	rs285478	C	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	165671687	165671688	chr1:165671688:A:G	rs2050619	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	165853653	165853654	chr1:165853654:T:C	rs4657481	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	166291273	166291274	chr1:166291274:A:G	rs919678	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	166383409	166383410	chr1:166383410:T:G	rs11590479	T	G	T	Sox1.mouse_HMG_2	10	1	+	4.501396738817928	1.7487992230928313	CAGAATTAGATTCAG
chr1	166693566	166693567	chr1:166693567:A:G	rs2184662	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	166859069	166859070	chr1:166859070:C:A	rs4657607	C	A	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	167186644	167186645	chr1:167186645:T:G	rs12117127	T	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	167441153	167441154	chr1:167441154:T:C	rs2280635	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.360312489694412	-1.5484422896208088	AGGAGTACCATTCAT
chr1	167467644	167467645	chr1:167467645:C:T	rs12132416	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.1159492883521938	-1.5566378153160616	CTGGCTTTCAGTCAT
chr1	167492084	167492085	chr1:167492085:T:C	rs858546	T	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	167516524	167516525	chr1:167516525:T:A	rs1737501	T	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	167536657	167536658	chr1:167536658:T:C	rs10489191	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	167709166	167709167	chr1:167709167:T:C	rs12119888	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	167822089	167822090	chr1:167822090:T:C	rs61737676	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	167904816	167904817	chr1:167904817:A:G	rs1343261551	A	G	a	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	167935093	167935094	chr1:167935094:A:G	rs140658846	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	167977436	167977437	chr1:167977437:T:C	rs138821548	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	168079990	168079991	chr1:168079991:T:C	rs10918822	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	168080024	168080025	chr1:168080025:A:G	chr1:168080025:A:G	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	168134306	168134307	chr1:168134307:A:G	rs4540637	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.268835327109631	-2.639919452205588	GAGGATAGCATTCAT
chr1	168402559	168402560	chr1:168402560:T:C	rs1830725	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	168466293	168466294	chr1:168466294:G:A	rs192351415	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	168585331	168585332	chr1:168585332:C:T	rs74120963	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	168599072	168599073	chr1:168599073:C:T	rs114600796	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.3969993742371685	5.098054193778244	TTGAGTAGCATTTAT
chr1	168636978	168636979	chr1:168636979:G:A	rs12024098	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	168636982	168636983	chr1:168636983:G:A	chr1:168636983:G:A	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	168709675	168709676	chr1:168709676:G:A	rs686226	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	168723376	168723377	chr1:168723377:C:A	rs11590043	C	A	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	168731323	168731324	chr1:168731324:A:G	rs1556790	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	168783883	168783884	chr1:168783884:T:C	rs926432	T	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	168861276	168861277	chr1:168861277:T:C	rs533218643	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	168961000	168961001	chr1:168961001:G:A	rs141607809	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	168961016	168961017	chr1:168961017:C:T	rs6674703	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	169000015	169000016	chr1:169000016:T:A	rs35990973	T	A	T	Sox1.mouse_HMG_2	1	1	+	4.077249879057623	-0.5667424284356105	GTGACAGCCATTCAA
chr1	169041815	169041816	chr1:169041816:G:A	rs35753880	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	169281752	169281753	chr1:169281753:A:G	rs113799014	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.1045261483694935	0.15840846059684488	ATGAATTACGTTTAT
chr1	169486464	169486465	chr1:169486465:C:T	rs72706085	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	169610027	169610028	chr1:169610028:G:A	rs3917740	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	169853401	169853402	chr1:169853402:A:G	rs1046058	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	169886434	169886435	chr1:169886435:A:G	rs3766151	A	G	G	Sox1.mouse_HMG_2	9	1	+	4.1715905404012545	-2.7371642389139663	TTAAATAACATTGAC
chr1	170074929	170074930	chr1:170074930:A:C	rs114510232	A	C	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	170074932	170074933	chr1:170074933:T:C	rs563174904	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	170275089	170275090	chr1:170275090:T:G	rs1332952	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	170538423	170538424	chr1:170538424:G:A	rs6676081	G	A	a	Sox1.mouse_HMG_2	5	1	-	3.214766410505496	10.123521189820716	CTGACCCACATTCAT
chr1	170538433	170538434	chr1:170538434:T:C	rs6688821	T	C	t	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	170637523	170637524	chr1:170637524:G:A	rs6427267	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	170835987	170835988	chr1:170835988:G:C	rs6686567	G	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	170910386	170910387	chr1:170910387:T:G	rs10919528	T	G	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	170989887	170989888	chr1:170989888:C:T	rs16863922	C	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	171110317	171110318	chr1:171110318:C:T	rs28363562	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	171237396	171237397	chr1:171237397:A:G	rs59910498	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	171252884	171252885	chr1:171252885:T:G	rs4073693	T	G	T	Sox1.mouse_HMG_2	7	1	+	6.36986822014743	6.526442574981531	ATGAATCTCAGTCTT
chr1	171916606	171916607	chr1:171916607:G:A	rs2901603	G	A	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	171948734	171948735	chr1:171948735:A:T	rs7513103	A	T	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	172042769	172042770	chr1:172042770:C:T	rs10910968	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.8620555101392204	-0.7833470228769962	CTGAATTCACTTCAT
chr1	172163877	172163878	chr1:172163878:T:C	rs796136719	T	C	-	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	172415925	172415926	chr1:172415926:G:A	rs12045369	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	172497740	172497741	chr1:172497741:G:A	rs12118647	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	172628412	172628413	chr1:172628413:T:C	rs12021702	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	172719470	172719471	chr1:172719471:A:G	rs6425039	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	172826203	172826204	chr1:172826204:G:T	rs115125837	G	T	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	172886435	172886436	chr1:172886436:A:G	rs68143871	A	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	172890051	172890052	chr1:172890052:C:T	rs12122161	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	172893843	172893844	chr1:172893844:C:T	rs11801183	C	T	C	Sox1.mouse_HMG_2	0	1	+	13.158226827826399	12.892283634056964	CTGACTAACATTCAA
chr1	172897808	172897809	chr1:172897809:C:T	rs12728265	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	172899078	172899079	chr1:172899079:C:T	rs56962913	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	172934305	172934306	chr1:172934306:T:A	rs115225300	T	A	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	172969879	172969880	chr1:172969880:C:T	rs77837933	C	T	C	Sox1.mouse_HMG_2	7	1	+	4.841063114079816	4.380118660372709	GTGCCTTCCATTCAG
chr1	173194217	173194218	chr1:173194218:G:A	rs10798264	G	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	173444944	173444945	chr1:173444945:C:T	rs141846315	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	173518784	173518785	chr1:173518785:G:T	rs12080722	G	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	174100842	174100843	chr1:174100843:T:C	rs6658769	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	174115811	174115812	chr1:174115812:A:G	chr1:174115812:A:G	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	174115816	174115817	chr1:174115817:C:G	chr1:174115817:C:G	C	G	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	174220265	174220266	chr1:174220266:T:G	rs56338048	T	G	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	174564602	174564603	chr1:174564603:C:T	rs7530265	C	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	174627901	174627902	chr1:174627902:A:G	rs12065825	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	174790519	174790520	chr1:174790520:G:A	rs115071894	G	A	g	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	174872245	174872246	chr1:174872246:A:G	rs534851103	A	G	A	Sox1.mouse_HMG_2	5	1	-	6.534017050898186	-0.37473772841703645	TTGAATACCAGCCAT
chr1	174964455	174964456	chr1:174964456:C:T	rs763245	C	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	174966205	174966206	chr1:174966206:T:C	rs10489334	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.127474486386329	-2.781280292928891	GTACATTACATTCAT
chr1	175089325	175089326	chr1:175089326:A:C	rs17302688	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	175133101	175133102	chr1:175133102:A:G	rs1476061	A	G	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	175225253	175225254	chr1:175225254:T:C	rs10798348	T	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	175344177	175344178	chr1:175344178:T:A	rs10798388	T	A	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	175431106	175431107	chr1:175431107:T:C	rs2859047	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr1	175660960	175660961	chr1:175660961:T:C	rs10913052	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr1	175897184	175897185	chr1:175897185:C:G	rs1000382	C	G	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	175919602	175919603	chr1:175919603:A:G	rs12753832	A	G	a	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	175937366	175937367	chr1:175937367:G:C	rs11576862	G	C	G	Sox1.mouse_HMG_2	4	1	-	4.548640703699332	0.10928900240618156	TTGACTAACAGGCAT
chr1	176778999	176779000	chr1:176779000:C:A	rs4652192	C	A	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	176843759	176843760	chr1:176843760:C:T	rs1883431	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	177021280	177021281	chr1:177021281:G:T	rs7545444	G	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	177069633	177069634	chr1:177069634:A:T	rs55755782	A	T	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	177393742	177393743	chr1:177393743:G:A	rs3829799	G	A	A	Sox1.mouse_HMG_2	10	1	+	5.508691318833261	1.4133472562780764	CTGACTTGCAGTTAT
chr1	177393755	177393756	chr1:177393756:T:G	rs736841	T	G	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	177586668	177586669	chr1:177586669:A:T	rs80168320	A	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	177747603	177747604	chr1:177747604:G:T	rs3117758	G	T	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	177777876	177777877	chr1:177777877:G:A	rs114799919	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	177800961	177800962	chr1:177800962:G:A	rs4478775	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	177959825	177959826	chr1:177959826:C:A	rs16828592	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	177976534	177976535	chr1:177976535:T:C	rs10913480	T	C	C	Sox1.mouse_HMG_2	11	1	+	2.70022398524828	-4.208530794066939	GTGAATCCCAGTCCT
chr1	177979442	177979443	chr1:177979443:T:C	rs1934651	T	C	C	Sox1.mouse_HMG_2	6	1	-	3.3142432752800772	1.8740658534114383	GTGAGTACCATTTAA
chr1	178010790	178010791	chr1:178010791:G:A	rs34122036	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.073333894086853	-1.5710927962951333	TTGACTGCCAGTTAC
chr1	178026187	178026188	chr1:178026188:G:A	rs41267170	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	178153648	178153649	chr1:178153649:C:G	rs10913509	C	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	178165968	178165969	chr1:178165969:C:T	rs61519364	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	178173060	178173061	chr1:178173061:G:T	rs10047059	G	T	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	178173072	178173073	chr1:178173073:G:A	rs316274	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	178267870	178267871	chr1:178267871:A:G	rs78526082	A	G	A	Sox1.mouse_HMG_2	10	1	+	2.400246083239428	6.495590145794612	CTGAATAGCTATCAT
chr1	178529932	178529933	chr1:178529933:T:A	rs6675811	T	A	T	Sox1.mouse_HMG_2	1	1	+	6.878622344092693	2.23463003659946	ATGACTTACAGTTAT
chr1	178563348	178563349	chr1:178563349:T:C	rs4433354	T	C	T	Sox1.mouse_HMG_2	9	1	-	15.282330098112196	8.373575318796975	CTGAATAGCATTCAC
chr1	178593852	178593853	chr1:178593853:G:A	rs2476554	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	178613484	178613485	chr1:178613485:G:C	rs12726107	G	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	178646078	178646079	chr1:178646079:T:C	rs1122579	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	178710819	178710820	chr1:178710820:C:T	rs2773093	C	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	178872836	178872837	chr1:178872837:T:C	rs75915052	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	179200342	179200343	chr1:179200343:G:A	rs12133855	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr1	179351442	179351443	chr1:179351443:A:G	rs13306731	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	179709959	179709960	chr1:179709960:A:C	rs113159432	A	C	A	Sox1.mouse_HMG_2	1	1	-	2.2532173691779764	-2.6952461173938347	CTGCTTAACATTCAC
chr1	179739814	179739815	chr1:179739815:A:G	rs4652452	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	179791806	179791807	chr1:179791807:A:G	rs4320747	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	179876240	179876241	chr1:179876241:G:A	rs78166262	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	180515924	180515925	chr1:180515925:T:G	rs16856064	T	G	T	Sox1.mouse_HMG_2	11	1	+	4.158990662970796	-2.7497641163444246	TTGAATTCCACTCTG
chr1	180563377	180563378	chr1:180563378:A:G	rs61811629	A	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	180563389	180563390	chr1:180563390:T:C	rs61811630	T	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	180571183	180571184	chr1:180571184:G:A	rs12032249	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	180644026	180644027	chr1:180644027:A:G	rs16856361	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	180737805	180737806	chr1:180737806:A:G	rs73034874	A	G	A	Sox1.mouse_HMG_2	3	1	+	1.8617455457577696	-5.047009233557449	CTGAGTAGCATTCCG
chr1	181091654	181091655	chr1:181091655:G:A	rs6658698	G	A	A	Sox1.mouse_HMG_2	0	1	-	8.23484839571003	7.968905201940598	CTGAATACCTTTCAA
chr1	181100814	181100815	chr1:181100815:C:T	rs114843278	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	181132942	181132943	chr1:181132943:A:G	rs7524675	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	181135732	181135733	chr1:181135733:C:G	rs4652564	C	G	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	181140107	181140108	chr1:181140108:G:C	rs4652566	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr1	181140508	181140509	chr1:181140509:A:G	rs76238232	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	181149555	181149556	chr1:181149556:T:C	rs12066554	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	181152064	181152065	chr1:181152065:T:C	rs142799078	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	181179937	181179938	chr1:181179938:G:T	rs10797679	G	T	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	181423562	181423563	chr1:181423563:T:C	rs631583	T	C	C	Sox1.mouse_HMG_2	5	1	+	6.067474673530194	-0.8412801057850267	CTCACTGGCATTCAC
chr1	181522681	181522682	chr1:181522682:G:A	rs16857488	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.348146111716715	-0.2972564212995016	GTGAGTTACATTCTA
chr1	181557863	181557864	chr1:181557864:A:G	rs6685144	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	181643800	181643801	chr1:181643801:C:T	rs10910978	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	181659103	181659104	chr1:181659104:T:C	rs143629619	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.815411804339985	-3.0060009648200885	GTACATAACATTCAG
chr1	182029210	182029211	chr1:182029211:C:G	rs111930622	C	G	c	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	182084728	182084729	chr1:182084729:G:T	rs3856104	G	T	T	Sox1.mouse_HMG_2	12	1	-	7.323499770735644	0.42305112026928005	ATGAATATGAGTCAC
chr1	182089819	182089820	chr1:182089820:G:A	rs2236537	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	182374214	182374215	chr1:182374215:G:A	rs79038403	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	182383485	182383486	chr1:182383486:T:C	rs7734	T	C	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	182594701	182594702	chr1:182594702:T:C	chr1:182594702:T:C	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	182636179	182636180	chr1:182636180:G:C	rs10911108	G	C	G	Sox1.mouse_HMG_2	3	1	-	5.38435489300791	5.38435489300791	ATGCCTTTCATTCAG
chr1	182765592	182765593	chr1:182765593:C:T	rs71632163	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	183125912	183125913	chr1:183125913:G:A	rs1886500	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr1	183126341	183126342	chr1:183126342:G:A	rs2296293	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	183130412	183130413	chr1:183130413:T:C	rs756300377	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	183130424	183130425	chr1:183130425:G:A	rs20559	G	A	G	Sox1.mouse_HMG_2	1	1	+	3.294691037987075	3.5991622170656505	CGGAATACCATTGAA
chr1	183219893	183219894	chr1:183219894:T:C	rs6424892	T	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	183219898	183219899	chr1:183219899:C:G	rs10911286	C	G	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	183230648	183230649	chr1:183230649:C:T	rs79020453	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	183273314	183273315	chr1:183273315:A:G	rs75870725	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	183543704	183543705	chr1:183543705:T:C	rs789176	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	183543727	183543728	chr1:183543728:A:G	rs188450563	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.33181877372496	0.6878264662317256	ATGAGTAGCATTTAT
chr1	183637611	183637612	chr1:183637612:C:A	rs1174686	C	A	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	183676632	183676633	chr1:183676633:G:A	rs75281768	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	183689831	183689832	chr1:183689832:C:T	rs191255444	C	T	C	Sox1.mouse_HMG_2	8	1	+	5.972716153762925	0.3282894633809389	ATAAAAAACATTCAT
chr1	183915628	183915629	chr1:183915629:C:T	rs568708813	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	184021611	184021612	chr1:184021612:G:A	rs10911494	G	A	A	Sox1.mouse_HMG_2	14	1	-	4.192954709003231	5.067567051725967	ATGAACAGAATTCAC
chr1	184222695	184222696	chr1:184222696:G:A	chr1:184222696:G:A	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	184406607	184406608	chr1:184406608:T:C	rs138231518	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	184480817	184480818	chr1:184480818:T:G	rs12082456	T	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	184903067	184903068	chr1:184903068:A:T	rs4651236	A	T	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	184903093	184903094	chr1:184903094:T:C	rs234674	T	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	184941782	184941783	chr1:184941783:G:A	rs234089	G	A	A	Sox1.mouse_HMG_2	4	1	-	6.509048730643375	2.0696970293502233	CTGACTGGCATTTAG
chr1	184972493	184972494	chr1:184972494:T:C	rs234105	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	185073436	185073437	chr1:185073437:T:C	rs17314171	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	185170220	185170221	chr1:185170221:G:A	rs72724103	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	185448901	185448902	chr1:185448902:T:A	rs34051260	T	A	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	185646477	185646478	chr1:185646478:T:G	chr1:185646478:T:G	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	185972642	185972643	chr1:185972643:G:A	rs6688811	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	186042080	186042081	chr1:186042081:A:G	rs10911805	A	G	G	Sox1.mouse_HMG_2	9	1	+	2.851734733088745	-4.057020046226475	ATGGATATCATACAT
chr1	186042102	186042103	chr1:186042103:A:C	rs6659819	A	C	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	186272605	186272606	chr1:186272606:T:C	rs857584	T	C	T	Sox1.mouse_HMG_2	3	1	-	3.9921132754492836	-2.9166415038659372	AATAATTACATTCAG
chr1	186466091	186466092	chr1:186466092:T:G	rs16825403	T	G	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	186577413	186577414	chr1:186577414:G:A	rs80090346	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	186735695	186735696	chr1:186735696:A:C	chr1:186735696:A:C	A	C	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	186903852	186903853	chr1:186903853:C:T	rs34796725	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	187281062	187281063	chr1:187281063:C:G	rs1496104	C	G	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	187646073	187646074	chr1:187646074:T:A	rs12730054	T	A	T	Sox1.mouse_HMG_2	11	1	+	4.572052407716539	-2.336702371598681	ATGCATTTCATTCTG
chr1	187764571	187764572	chr1:187764572:T:C	rs2495444	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	187794728	187794729	chr1:187794729:T:G	rs2430096	T	G	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	187952819	187952820	chr1:187952820:C:T	rs186271519	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	188037681	188037682	chr1:188037682:C:T	rs1835866	C	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	189356472	189356473	chr1:189356473:G:C	rs12124399	G	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	189538529	189538530	chr1:189538530:C:A	rs116147536	C	A	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	189607324	189607325	chr1:189607325:T:C	rs13374066	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	189607326	189607327	chr1:189607327:A:C	rs12118969	A	C	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	191255839	191255840	chr1:191255840:G:T	rs1246824	G	T	G	Sox1.mouse_HMG_2	12	1	-	6.9600139553768	0.05956530491043582	CTGAATAGAATTCTG
chr1	191697965	191697966	chr1:191697966:A:G	rs1336861	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	191963691	191963692	chr1:191963692:G:A	rs12144141	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	192081765	192081766	chr1:192081766:A:T	rs3012199	A	T	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	192133500	192133501	chr1:192133501:G:A	rs115916088	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	192225849	192225850	chr1:192225850:C:T	rs528396266	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	192445151	192445152	chr1:192445152:T:C	rs12725829	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	192546043	192546044	chr1:192546044:C:T	rs55969313	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.764948668578043	-1.8794780218039429	CTGAATGCCTTTCTG
chr1	192579479	192579480	chr1:192579480:G:A	rs531897350	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	192635183	192635184	chr1:192635184:C:A	rs10921224	C	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	192737666	192737667	chr1:192737667:G:A	rs76420531	G	A	g	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	192747626	192747627	chr1:192747627:G:C	rs141575378	G	C	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	192775681	192775682	chr1:192775682:T:G	rs1342806	T	G	G	Sox1.mouse_HMG_2	3	1	-	5.029612555126681	-1.87914222418854	CTGAATATCAGTGAA
chr1	193732261	193732262	chr1:193732262:C:T	rs7550266	C	T	c	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	193762445	193762446	chr1:193762446:T:C	rs35685328	T	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	193762460	193762461	chr1:193762461:G:A	rs33931767	G	A	A	Sox1.mouse_HMG_2	4	1	-	5.0683319992776985	0.6289802979845457	ATGACTTCTATTCTT
chr1	193819363	193819364	chr1:193819364:G:A	rs12142903	G	A	g	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	194327198	194327199	chr1:194327199:A:C	rs6428216	A	C	A	Sox1.mouse_HMG_2	13	1	+	5.498010356219115	-0.822705652910232	CTGCATTTCAGTCAT
chr1	195115333	195115334	chr1:195115334:A:T	rs10921789	A	T	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	195306573	195306574	chr1:195306574:T:G	rs17661899	T	G	T	Sox1.mouse_HMG_2	5	1	+	7.821788117607265	0.9130333382920438	TTGACTTACATTTAC
chr1	195537204	195537205	chr1:195537205:A:G	rs10921864	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	195548331	195548332	chr1:195548332:T:C	rs77341067	T	C	t	Sox1.mouse_HMG_2	13	1	-	3.97682507244815	-0.9692926153244982	TTTAATAAGATTCAT
chr1	195714875	195714876	chr1:195714876:T:C	rs10921896	T	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	195848838	195848839	chr1:195848839:C:T	rs10754163	C	T	C	Sox1.mouse_HMG_2	12	1	+	8.136600783291263	3.4640136796230063	ATGACTTAAATTCAA
chr1	195958480	195958481	chr1:195958481:A:G	rs10921993	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	196208181	196208182	chr1:196208182:G:A	rs76204409	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	196910405	196910406	chr1:196910406:A:T	rs570664388	A	T	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	197311227	197311228	chr1:197311228:C:T	rs2184850	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	197696176	197696177	chr1:197696177:T:C	rs114979698	T	C	T	Sox1.mouse_HMG_2	11	1	+	5.730319270657154	-1.1784355086580671	CTGCCTGCCATTCAT
chr1	197949223	197949224	chr1:197949224:C:A	rs189169724	C	A	C	Sox1.mouse_HMG_2	12	1	+	6.3975101240601635	-0.5029385264062006	TAGAATAGAATTCAT
chr1	198003609	198003610	chr1:198003610:G:C	rs10754244	G	C	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	198307668	198307669	chr1:198307669:C:T	rs12093069	C	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	198663226	198663227	chr1:198663227:C:T	rs1998843	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	198772041	198772042	chr1:198772042:C:G	rs59627919	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	198858275	198858276	chr1:198858276:A:G	rs115109359	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	198881367	198881368	chr1:198881368:C:G	chr1:198881368:C:G	C	G	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	198894037	198894038	chr1:198894038:C:T	rs12134155	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	199152201	199152202	chr1:199152202:G:A	rs3861924	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	199350490	199350491	chr1:199350491:T:C	rs593503	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	199352595	199352596	chr1:199352596:G:A	rs61819158	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	199394982	199394983	chr1:199394983:G:T	rs4562659	G	T	G	Sox1.mouse_HMG_2	8	1	-	7.1278997671991995	2.2784029516871014	TTGAAATCCATTCAA
chr1	199395873	199395874	chr1:199395874:A:G	rs7541515	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	199537873	199537874	chr1:199537874:G:A	rs72735445	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	199781209	199781210	chr1:199781210:T:A	chr1:199781210:T:A	T	A	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	199856459	199856460	chr1:199856460:C:A	rs75192614	C	A	C	Sox1.mouse_HMG_2	14	1	-	4.423771929540774	5.576840046328512	TCGAATTTCATTTAG
chr1	199869038	199869039	chr1:199869039:A:C	rs139684235	A	C	A	Sox1.mouse_HMG_2	2	1	+	6.416435255546924	5.669220853716703	TTAAATATCATTTAT
chr1	200228038	200228039	chr1:200228039:T:C	rs12029277	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	200653139	200653140	chr1:200653140:C:T	rs115105198	C	T	c	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	200653169	200653170	chr1:200653170:C:T	rs114522239	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	200674709	200674710	chr1:200674710:T:C	rs6667172	T	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	200730496	200730497	chr1:200730497:T:G	rs6427853	T	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	201299207	201299208	chr1:201299208:A:G	rs147369066	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	201336207	201336208	chr1:201336208:A:G	rs1539692	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	201368041	201368042	chr1:201368042:A:G	rs3729842	A	G	G	Sox1.mouse_HMG_2	1	1	-	7.173748971521256	2.529756664028022	TTGACTAAGATTCAA
chr1	201461621	201461622	chr1:201461622:G:A	rs1014503702	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	201541269	201541270	chr1:201541270:T:C	rs6670020	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	201696490	201696491	chr1:201696491:A:C	chr1:201696491:A:C	A	C	A	Sox1.mouse_HMG_2	11	1	-	3.314877157805096	-3.5938776215101242	CTCACTGGCAGTCAC
chr1	201730956	201730957	chr1:201730957:C:T	rs11584710	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	201751065	201751066	chr1:201751066:C:T	rs12093968	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.031833792125702	-0.6407533115425531	AGGAATTTCACTCAT
chr1	201778995	201778996	chr1:201778996:G:A	rs665770	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	202058799	202058800	chr1:202058800:A:G	rs114757723	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	202058801	202058802	chr1:202058802:G:C	rs11811224	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	202236987	202236988	chr1:202236988:T:C	chr1:202236988:T:C	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	202254528	202254529	chr1:202254529:T:A	rs115723332	T	A	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	202289988	202289989	chr1:202289989:A:G	rs187970821	A	G	A	Sox1.mouse_HMG_2	11	1	-	9.76879564125282	2.8600408619376014	ATGAATATCATTAAT
chr1	202321857	202321858	chr1:202321858:G:A	rs788809	G	A	A	Sox1.mouse_HMG_2	12	1	-	5.874002296165042	1.2014151924967866	ATGGATACCATTCTG
chr1	202352984	202352985	chr1:202352985:T:G	rs6658708	T	G	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	202381051	202381052	chr1:202381052:C:T	rs2696956	C	T	c	Sox1.mouse_HMG_2	13	1	+	3.290541380071404	6.416893836042458	CTCAATAGCATTCCG
chr1	202715739	202715740	chr1:202715740:C:T	rs4245699	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	202753219	202753220	chr1:202753220:A:G	rs4950793	A	G	G	Sox1.mouse_HMG_2	1	1	-	2.34015406778276	-2.303838239710475	CTGGCTCACATTCAC
chr1	203114022	203114023	chr1:203114023:G:A	rs17510253	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	203275730	203275731	chr1:203275731:A:T	rs2486931	A	T	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	203350687	203350688	chr1:203350688:G:A	rs6697630	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	203396103	203396104	chr1:203396104:A:G	rs10800925	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	203425451	203425452	chr1:203425452:A:G	rs2275672	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	203512947	203512948	chr1:203512948:G:A	rs79795557	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	203525250	203525251	chr1:203525251:C:T	rs13303363	C	T	C	Sox1.mouse_HMG_2	6	1	-	4.337456232909876	5.7776336547785165	TTGAATGACAGACAG
chr1	203803967	203803968	chr1:203803968:A:C	rs7518201	A	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	203869080	203869081	chr1:203869081:C:T	rs7542275	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	204100829	204100830	chr1:204100830:T:C	rs1534097	T	C	C	Sox1.mouse_HMG_2	3	1	-	3.3554715798858417	-3.5532831994293788	TGGAATGACACTCAT
chr1	204282625	204282626	chr1:204282626:A:G	rs12124529	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	204293906	204293907	chr1:204293907:G:C	rs4073193	G	C	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	204468442	204468443	chr1:204468443:G:C	rs17406570	G	C	G	Sox1.mouse_HMG_2	12	1	-	8.885877169681232	1.9854285192148657	ATGAAGATCATTCAC
chr1	204468465	204468466	chr1:204468466:C:T	rs12093802	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	204506680	204506681	chr1:204506681:T:C	rs115794764	T	C	t	Sox1.mouse_HMG_2	0	1	+	3.656925517404727	3.9228687111741594	TTGAATTCAAATCAT
chr1	204506700	204506701	chr1:204506701:A:G	chr1:204506701:A:G	A	G	a	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr1	204506705	204506706	chr1:204506706:G:T	rs4951389	G	T	t	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	204508848	204508849	chr1:204508849:A:G	rs11240754	A	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	204902911	204902912	chr1:204902912:G:A	chr1:204902912:G:A	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	204902939	204902940	chr1:204902940:A:G	rs12755184	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	204922029	204922030	chr1:204922030:G:A	rs373116642	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	204967478	204967479	chr1:204967479:A:G	rs12725682	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.416380638564455	-1.4050321305956168	ATGAATCTCATTGAT
chr1	205236655	205236656	chr1:205236656:A:G	rs896318	A	G	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr1	205354695	205354696	chr1:205354696:T:C	rs184228320	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	205653124	205653125	chr1:205653125:G:A	rs7514718	G	A	a	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	205764009	205764010	chr1:205764010:A:G	rs823147	A	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	205984697	205984698	chr1:205984698:T:C	rs878898522	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	206003538	206003539	chr1:206003539:T:A	rs918596283	T	A	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	206035437	206035438	chr1:206035438:T:C	rs28378117	T	C	C	Sox1.mouse_HMG_2	9	1	-	3.324912894447362	-3.583841884867857	TAGAAAACCATTCAA
chr1	206129503	206129504	chr1:206129504:G:A	rs73086104	G	A	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	206447681	206447682	chr1:206447682:C:A	rs61817176	C	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	206470603	206470604	chr1:206470604:G:A	rs41303988	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	206470629	206470630	chr1:206470630:A:C	rs17020312	A	C	A	Sox1.mouse_HMG_2	5	1	-	6.78551266141883	-0.1232421178963915	CTCACTGTCATTCAT
chr1	206558115	206558116	chr1:206558116:A:G	rs115098986	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	206558118	206558119	chr1:206558119:G:T	rs550568903	G	T	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	206662639	206662640	chr1:206662640:T:C	rs12140926	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	206710774	206710775	chr1:206710775:A:C	rs12127807	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	206737289	206737290	chr1:206737290:C:T	chr1:206737290:C:T	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	206737326	206737327	chr1:206737327:A:G	rs138454123	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	207006436	207006437	chr1:207006437:A:G	rs11586424	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	207006476	207006477	chr1:207006477:G:A	rs4844564	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	207184176	207184177	chr1:207184177:T:C	rs17022385	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	207241386	207241387	chr1:207241387:C:T	rs17258843	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	207458432	207458433	chr1:207458433:T:C	rs311307	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	207502507	207502508	chr1:207502508:T:G	rs12075933	T	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	207649210	207649211	chr1:207649211:C:T	rs7544931	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	207649235	207649236	chr1:207649236:G:T	rs7521762	G	T	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	207806300	207806301	chr1:207806301:A:C	rs144470755	A	C	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	207844323	207844324	chr1:207844324:C:T	rs2745978	C	T	T	Sox1.mouse_HMG_2	7	1	+	5.602479168984706	5.1415347152776	TGGAATACTATTCAT
chr1	207844327	207844328	chr1:207844328:T:C	rs2724395	T	C	T	Sox1.mouse_HMG_2	11	1	+	5.602479168984706	-1.3062756103305144	TGGAATACTATTCAT
chr1	207876418	207876419	chr1:207876419:C:T	rs56687974	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	207948627	207948628	chr1:207948628:A:G	rs114577368	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	207991111	207991112	chr1:207991112:T:C	rs80018811	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	208022170	208022171	chr1:208022171:A:C	rs1193096	A	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	208105882	208105883	chr1:208105883:G:A	rs11118986	G	A	G	Sox1.mouse_HMG_2	13	1	+	2.307996422217927	7.254114109990575	CTGCATTGCATTCGG
chr1	208153868	208153869	chr1:208153869:T:A	rs12024077	T	A	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	208279342	208279343	chr1:208279343:T:C	rs67116579	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	208374982	208374983	chr1:208374983:G:A	rs59267144	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	208534078	208534079	chr1:208534079:A:G	rs111677783	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	208578036	208578037	chr1:208578037:C:T	rs12144235	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr1	208748465	208748466	chr1:208748466:G:A	rs974767918	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	208784415	208784416	chr1:208784416:T:G	rs1166933	T	G	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	208988445	208988446	chr1:208988446:A:T	rs10863738	A	T	A	Sox1.mouse_HMG_2	13	1	+	4.828817031264634	1.6344534781063418	ATCCATACCATTCAT
chr1	209182188	209182189	chr1:209182189:G:T	rs6701612	G	T	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	209203204	209203205	chr1:209203205:G:A	rs2970555	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	209537669	209537670	chr1:209537670:T:C	rs2142967	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	209613537	209613538	chr1:209613538:C:T	rs2206107	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	209618583	209618584	chr1:209618584:G:T	rs2076222	G	T	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	209651480	209651481	chr1:209651481:G:A	rs3753523	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	209652040	209652041	chr1:209652041:T:C	rs10863778	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.715478687289552	0.07148637979631939	CTGACTTTCATCCAG
chr1	209748777	209748778	chr1:209748778:G:T	rs12030655	G	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	209831920	209831921	chr1:209831921:C:T	rs138055071	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.3041103866816535	-2.3403163037003334	TGGAATAGCATTCCA
chr1	209873440	209873441	chr1:209873441:G:A	rs1883332	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	209883230	209883231	chr1:209883231:G:A	rs11119360	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	209883232	209883233	chr1:209883233:G:A	rs74225466	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	209890971	209890972	chr1:209890972:A:C	rs10863795	A	C	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	210048719	210048720	chr1:210048720:A:G	rs4844942	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	210332174	210332175	chr1:210332175:T:C	rs56393518	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	210332786	210332787	chr1:210332787:A:G	rs191276891	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.719185267022845	1.0751929595296112	GTGACTCACATTCTC
chr1	210344454	210344455	chr1:210344455:A:G	rs4844520	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	210557177	210557178	chr1:210557178:A:G	rs6659137	A	G	A	Sox1.mouse_HMG_2	5	1	-	8.919484077662569	2.010729298347351	ATGCATTTCATTCAT
chr1	210829083	210829084	chr1:210829084:C:T	rs76389800	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	210918506	210918507	chr1:210918507:C:T	rs61848992	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	210952801	210952802	chr1:210952802:A:G	rs1393030	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	211146182	211146183	chr1:211146183:G:A	rs7545673	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	211222077	211222078	chr1:211222078:C:T	rs3111245	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	211524143	211524144	chr1:211524144:G:T	rs2032005	G	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr1	211781782	211781783	chr1:211781783:G:A	rs11119810	G	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	212037941	212037942	chr1:212037942:G:T	rs1578993	G	T	T	Sox1.mouse_HMG_2	12	1	-	5.432750351633911	-1.467698298832453	ATGAATACAAATCAT
chr1	212161180	212161181	chr1:212161181:T:C	rs17018586	T	C	T	Sox1.mouse_HMG_2	14	1	-	5.590974833541398	5.7556160814363455	GTGAATAGGATTCTA
chr1	212161229	212161230	chr1:212161230:A:G	rs17018589	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.79380736306285	-3.027605406097223	TTGTATTGCATTCTG
chr1	212192710	212192711	chr1:212192711:A:T	rs12038888	A	T	A	Sox1.mouse_HMG_2	6	1	-	6.5204398414480895	7.3614452761894835	ATGACATACATTCAC
chr1	212220377	212220378	chr1:212220378:T:C	rs1908141	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	212313968	212313969	chr1:212313969:A:C	rs12035647	A	C	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	212486154	212486155	chr1:212486155:T:C	rs528345213	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	212529289	212529290	chr1:212529290:C:G	rs143577983	C	G	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	212529313	212529314	chr1:212529314:A:G	rs1331060	A	G	A	Sox1.mouse_HMG_2	8	1	-	5.788775021324862	11.433201711706849	ATCAATAGTATTCAT
chr1	212532781	212532782	chr1:212532782:A:G	rs6692374	A	G	A	Sox1.mouse_HMG_2	11	1	+	9.760489512403966	9.760489512403966	ATGAATATCATACAT
chr1	212546138	212546139	chr1:212546139:C:T	rs581751	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	212546155	212546156	chr1:212546156:T:C	rs67693441	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	212564980	212564981	chr1:212564981:G:A	chr1:212564981:G:A	G	A	G	Sox1.mouse_HMG_2	6	1	-	5.777868640187665	9.289278208134634	AAGAATCACAGTCAT
chr1	212684562	212684563	chr1:212684563:A:G	rs7533204	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	212693633	212693634	chr1:212693634:G:A	rs11119997	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	212753696	212753697	chr1:212753697:T:C	rs78015280	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	212816765	212816766	chr1:212816766:T:A	rs6540767	T	A	A	Sox1.mouse_HMG_2	14	1	-	4.889478902055042	6.207188266737728	AGGAATTTCATTTAA
chr1	213399724	213399725	chr1:213399725:T:C	rs75433441	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	213504916	213504917	chr1:213504917:T:C	rs178599	T	C	C	Sox1.mouse_HMG_2	5	1	+	3.0083090879228456	-3.9004456913923744	ATGCATAGCATCCAT
chr1	213586368	213586369	chr1:213586369:G:T	rs11120162	G	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	213599477	213599478	chr1:213599478:A:G	rs11120168	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.665418967572132	-2.155993801587942	GGGAAAAACATTCAT
chr1	213622494	213622495	chr1:213622495:G:A	rs75711618	G	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	213797616	213797617	chr1:213797617:T:C	rs6702664	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	213817640	213817641	chr1:213817641:G:A	rs10494965	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	213892167	213892168	chr1:213892168:A:G	rs701895	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	214003525	214003526	chr1:214003526:G:A	rs4282786	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	214105637	214105638	chr1:214105638:T:C	rs1223747	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	214220196	214220197	chr1:214220197:G:A	rs12134227	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	214220207	214220208	chr1:214220208:C:T	rs76229336	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	214280232	214280233	chr1:214280233:T:A	rs113608074	T	A	t	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	214283325	214283326	chr1:214283326:C:T	rs34071166	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	214318617	214318618	chr1:214318618:C:T	rs12124666	C	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	214427359	214427360	chr1:214427360:T:C	rs4475717	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	214447500	214447501	chr1:214447501:G:T	rs74226185	G	T	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	214528716	214528717	chr1:214528717:A:G	rs10864109	A	G	G	Sox1.mouse_HMG_2	5	1	-	3.585199870908158	-3.3235549084070635	CTGACTTCCAGTGAT
chr1	214582424	214582425	chr1:214582425:C:T	rs34117447	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	214640781	214640782	chr1:214640782:G:A	rs3795522	G	A	A	Sox1.mouse_HMG_2	5	1	-	2.989050183453191	9.897804962768413	CTAAACGACATTCAC
chr1	215192625	215192626	chr1:215192626:A:G	rs17024391	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr1	215384574	215384575	chr1:215384575:T:C	rs11120584	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	215568479	215568480	chr1:215568480:C:T	rs371282812	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	216033425	216033426	chr1:216033426:G:A	rs11120725	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	216457034	216457035	chr1:216457035:A:C	rs137985705	A	C	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	216617272	216617273	chr1:216617273:T:C	rs560326634	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	216779940	216779941	chr1:216779941:G:A	rs7535876	G	A	G	Sox1.mouse_HMG_2	0	1	+	2.4604596863281603	3.464695918963362	GTGACTAGCAGCCAA
chr1	216832346	216832347	chr1:216832347:A:G	rs12077440	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	216902924	216902925	chr1:216902925:G:T	rs750585909	G	T	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	217011300	217011301	chr1:217011301:G:A	rs946438	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	217267357	217267358	chr1:217267358:G:T	rs76298137	G	T	G	Sox1.mouse_HMG_2	12	1	-	4.814583897468768	-2.085864752997597	CTGACTAACAGCCAT
chr1	217272391	217272392	chr1:217272392:C:A	rs78579108	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	217862224	217862225	chr1:217862225:A:G	rs10779304	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	217983340	217983341	chr1:217983341:T:C	rs114908539	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	217993524	217993525	chr1:217993525:G:A	rs55896986	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	218380186	218380187	chr1:218380187:C:T	rs2009112	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	218380191	218380192	chr1:218380192:G:C	rs191340150	G	C	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	218389525	218389526	chr1:218389526:C:T	rs10482766	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	218459760	218459761	chr1:218459761:C:T	rs143002460	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr1	218513400	218513401	chr1:218513401:G:C	rs6604620	G	C	G	Sox1.mouse_HMG_2	14	1	-	4.362673137878432	4.08421736381343	AAGAATTTCAGTCTC
chr1	218582776	218582777	chr1:218582777:A:G	rs259469	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	218668215	218668216	chr1:218668216:T:G	rs76554564	T	G	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	218867138	218867139	chr1:218867139:C:T	rs638495	C	T	c	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	218967686	218967687	chr1:218967687:G:C	rs627486	G	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	218979557	218979558	chr1:218979558:T:C	rs12562018	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	219074726	219074727	chr1:219074727:T:G	rs17579646	T	G	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	219302900	219302901	chr1:219302901:C:T	rs11118261	C	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	219371724	219371725	chr1:219371725:T:C	rs74572593	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	219515002	219515003	chr1:219515003:T:C	rs1547724	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr1	219636004	219636005	chr1:219636005:T:C	rs10863470	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	219991511	219991512	chr1:219991512:C:G	rs1622508	C	G	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	219994049	219994050	chr1:219994050:G:C	rs10779393	G	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	220281309	220281310	chr1:220281310:T:A	rs114313518	T	A	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	220326897	220326898	chr1:220326898:G:A	rs4846626	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	220334237	220334238	chr1:220334238:G:A	rs17641611	G	A	G	Sox1.mouse_HMG_2	2	1	+	6.859565689143344	2.214163156127128	CTGAATTTCAGTTAC
chr1	220421719	220421720	chr1:220421720:T:C	rs7523525	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.196628636786917	-1.7121261425283043	CTGACTAGCAGTTAG
chr1	220421738	220421739	chr1:220421739:C:T	rs4846645	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	220552945	220552946	chr1:220552946:A:G	rs4846326	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	220703010	220703011	chr1:220703011:A:T	rs389499	A	T	a	Sox1.mouse_HMG_2	4	1	+	4.400102323326361	-2.421310445833712	TTGAATTTCATTTGC
chr1	220812334	220812335	chr1:220812335:C:T	rs2642449	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	220881392	220881393	chr1:220881393:T:A	rs74140371	T	A	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	220881418	220881419	chr1:220881419:C:G	rs17597773	C	G	C	Sox1.mouse_HMG_2	8	1	+	5.926278252503013	0.2077435899673054	CCGACTAACAGTCAG
chr1	220917814	220917815	chr1:220917815:T:C	rs1414518	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	221012497	221012498	chr1:221012498:T:C	rs1335922	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	221264304	221264305	chr1:221264305:G:A	rs78324305	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	221372754	221372755	chr1:221372755:G:A	rs6660885	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	221430335	221430336	chr1:221430336:A:G	rs1599092	A	G	A	Sox1.mouse_HMG_2	13	1	+	7.30123821942443	2.3551205316517816	TTGACTAACATACAT
chr1	221438153	221438154	chr1:221438154:T:G	rs12029151	T	G	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	221716351	221716352	chr1:221716352:A:G	rs61820082	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	221745156	221745157	chr1:221745157:A:G	rs75880035	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	221850505	221850506	chr1:221850506:A:T	rs7540791	A	T	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	221859339	221859340	chr1:221859340:C:A	rs10863665	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	221907567	221907568	chr1:221907568:G:A	rs17011062	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	222057372	222057373	chr1:222057373:T:G	rs2066136	T	G	G	Sox1.mouse_HMG_2	3	1	-	5.5507314064626705	-1.3580233728525501	ATGAATGACTGTCAC
chr1	222077700	222077701	chr1:222077701:A:G	rs11118936	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr1	222168057	222168058	chr1:222168058:T:C	rs1336167	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	222168058	222168059	chr1:222168059:G:A	rs1336168	G	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	222203435	222203436	chr1:222203436:G:A	rs1029211	G	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	222241642	222241643	chr1:222241643:G:A	rs79175330	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	222374045	222374046	chr1:222374046:G:C	rs4568840	G	C	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	222787779	222787780	chr1:222787780:A:G	rs34430931	A	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	223118827	223118828	chr1:223118828:G:T	rs112980629	G	T	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	223148632	223148633	chr1:223148633:G:C	rs2353475	G	C	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	223338792	223338793	chr1:223338793:A:G	rs61838240	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	223542986	223542987	chr1:223542987:A:G	rs4072246	A	G	G	Sox1.mouse_HMG_2	14	1	-	9.217197733475873	8.342585390753138	GTGAATACCATGCAT
chr1	223661993	223661994	chr1:223661994:A:T	rs72747974	A	T	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	223777073	223777074	chr1:223777074:A:G	rs974345327	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	223777076	223777077	chr1:223777077:A:T	chr1:223777077:A:T	A	T	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	224012720	224012721	chr1:224012721:A:G	rs140355443	A	G	-	Sox1.mouse_HMG_2	13	1	-	5.380257225362279	2.253904769391225	GTCAATTCCATTCTA
chr1	224113407	224113408	chr1:224113408:T:C	rs4653972	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr1	224435769	224435770	chr1:224435770:A:T	rs144634191	A	T	A	Sox1.mouse_HMG_2	1	1	-	3.8338579176108425	-0.8101343898823905	ATGATTAAGATTCAG
chr1	224619273	224619274	chr1:224619274:A:G	rs9919286	A	G	A	Sox1.mouse_HMG_2	10	1	-	7.020240517416674	0.1722989391363935	CTGATTTTCATTCAA
chr1	224861044	224861045	chr1:224861045:A:G	rs2800235	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	225434561	225434562	chr1:225434562:A:G	rs16844896	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	225464902	225464903	chr1:225464903:T:C	rs12564945	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	225464915	225464916	chr1:225464916:C:G	rs7536925	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	225543566	225543567	chr1:225543567:G:A	rs569675887	G	A	G	Sox1.mouse_HMG_2	14	1	+	5.086417268878765	4.921776020983818	CTAACTACCATTCTG
chr1	225916975	225916976	chr1:225916976:T:G	rs360066	T	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	226363804	226363805	chr1:226363805:T:C	rs752308	T	C	t	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	226609724	226609725	chr1:226609725:T:C	rs6664080	T	C	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	226619108	226619109	chr1:226619109:G:A	rs79045708	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	226760312	226760313	chr1:226760313:T:C	rs80010608	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	227083492	227083493	chr1:227083493:C:G	rs6681424	C	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	227245051	227245052	chr1:227245052:C:T	rs77973381	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	227313342	227313343	chr1:227313343:A:G	rs16847634	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.162352814643457	0.21623512687080884	ATGAATGCCAGTAAC
chr1	227316632	227316633	chr1:227316633:T:C	rs12405363	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr1	227561637	227561638	chr1:227561638:G:C	rs4653513	G	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	227586998	227586999	chr1:227586999:G:A	rs7549475	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	227909025	227909026	chr1:227909026:C:A	rs74852001	C	A	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr1	227958336	227958337	chr1:227958337:A:G	rs78287581	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	228096174	228096175	chr1:228096175:T:C	rs708126	T	C	C	Sox1.mouse_HMG_2	9	1	-	2.8442299626473204	-4.0645248166679	CTGAATCACAGCCAT
chr1	228357203	228357204	chr1:228357204:C:A	rs3178839	C	A	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	228443939	228443940	chr1:228443940:G:A	rs12131962	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	228499678	228499679	chr1:228499679:A:C	rs9287013	A	C	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	228861027	228861028	chr1:228861028:T:C	rs801113	T	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr1	228861038	228861039	chr1:228861039:A:T	rs74726942	A	T	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	228943909	228943910	chr1:228943910:G:A	rs2318327	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	228958350	228958351	chr1:228958351:A:C	rs16849250	A	C	.	Sox1.mouse_HMG_2	9	1	+	4.406352408999528	-2.5024023703156923	ATCACTGACAGTCAG
chr1	229026767	229026768	chr1:229026768:C:T	rs6677583	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.543575573736156	0.8981730407199405	GTGTATAACAGTCAA
chr1	229142616	229142617	chr1:229142617:T:C	rs115035279	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	229147184	229147185	chr1:229147185:T:C	rs9660543	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	229258250	229258251	chr1:229258251:G:A	rs41305142	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	229381948	229381949	chr1:229381949:C:T	rs577008	C	T	t	Sox1.mouse_HMG_2	7	1	-	4.9103934524386625	5.6114482719797385	CTGACTCGCATTCTA
chr1	229386794	229386795	chr1:229386795:T:C	rs6587332	T	C	C	Sox1.mouse_HMG_2	9	1	-	9.025531974538634	2.1167771952234133	GTAAATTTCATTCAG
chr1	229420831	229420832	chr1:229420832:A:G	rs600171	A	G	G	Sox1.mouse_HMG_2	13	1	+	4.038965221983065	-0.9071524657895836	CTGAATTCCATATAT
chr1	229603748	229603749	chr1:229603749:C:A	rs10916526	C	A	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	229691699	229691700	chr1:229691700:A:G	rs16850106	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	229696828	229696829	chr1:229696829:T:C	rs192634580	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.04606322095482	-2.862691558360401	ATCAATGGCAGTCTT
chr1	230050431	230050432	chr1:230050432:C:T	rs12084370	C	T	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr1	230073610	230073611	chr1:230073611:C:T	rs192632943	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr1	230090205	230090206	chr1:230090206:A:G	rs113224600	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	230099284	230099285	chr1:230099285:G:A	rs12726525	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	230136823	230136824	chr1:230136824:A:G	rs139910054	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	230161682	230161683	chr1:230161683:T:G	rs2281720	T	G	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	230204787	230204788	chr1:230204788:A:C	rs561197653	A	C	A	Sox1.mouse_HMG_2	10	1	-	3.1915374499123663	0.43893993418726984	CTATATTCCATTCAC
chr1	230286284	230286285	chr1:230286285:T:G	rs17762687	T	G	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	230352463	230352464	chr1:230352464:T:A	rs1008059	T	A	A	Sox1.mouse_HMG_2	1	1	+	3.1351277046261044	-1.5088646028671278	CTGCCTTCCATTCTT
chr1	230352478	230352479	chr1:230352479:T:C	rs6663029	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	230656437	230656438	chr1:230656438:G:A	rs11122570	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	230681687	230681688	chr1:230681688:C:G	rs1467672	C	G	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr1	230693240	230693241	chr1:230693241:C:A	rs2478534	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	230702511	230702512	chr1:230702512:G:A	rs2067853	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr1	230848318	230848319	chr1:230848319:G:A	rs140040505	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	230850797	230850798	chr1:230850798:C:T	rs1202562	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	230865895	230865896	chr1:230865896:T:C	rs12042016	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	230917401	230917402	chr1:230917402:T:C	rs16853167	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr1	231091873	231091874	chr1:231091874:A:C	rs73112150	A	C	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	231108251	231108252	chr1:231108252:G:A	rs146877253	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	231242014	231242015	chr1:231242015:A:G	rs822625	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	231423593	231423594	chr1:231423594:A:G	rs7544596	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	231534890	231534891	chr1:231534891:G:A	rs12120472	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	231691571	231691572	chr1:231691572:T:C	rs16854779	T	C	T	Sox1.mouse_HMG_2	13	1	-	8.727952464049777	3.781834776277128	GTAAATACCAGTCAT
chr1	231761556	231761557	chr1:231761557:A:G	rs1538977	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	231776716	231776717	chr1:231776717:A:C	rs148490618	A	C	A	Sox1.mouse_HMG_2	13	1	-	5.58681959509311	3.835065460478754	GTGAATTACATTATT
chr1	231959418	231959419	chr1:231959419:G:T	rs746440470	G	T	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	232016750	232016751	chr1:232016751:A:G	rs1475515	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	232085972	232085973	chr1:232085973:A:G	rs10779829	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr1	232282154	232282155	chr1:232282155:T:A	rs4644444	T	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	232417992	232417993	chr1:232417993:C:T	rs946132	C	T	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr1	232429349	232429350	chr1:232429350:C:T	rs116118731	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	232555959	232555960	chr1:232555960:G:A	rs140725963	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	232575822	232575823	chr1:232575823:G:A	rs2025725	G	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	232939169	232939170	chr1:232939170:T:C	rs9424513	T	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	233075761	233075762	chr1:233075762:A:G	rs10797600	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	233097860	233097861	chr1:233097861:A:T	rs60694383	A	T	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr1	233218439	233218440	chr1:233218440:T:C	rs12729762	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr1	233390215	233390216	chr1:233390216:G:A	rs1294194	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr1	233538088	233538089	chr1:233538089:A:G	chr1:233538089:A:G	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr1	233809422	233809423	chr1:233809423:T:A	rs950469	T	A	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr1	233945830	233945831	chr1:233945831:G:A	rs112716559	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	233945860	233945861	chr1:233945861:A:G	rs920136095	A	G	A	Sox1.mouse_HMG_2	0	1	-	6.230368137603451	6.496311331372883	TTGACTCACAGTCAC
chr1	233959587	233959588	chr1:233959588:T:C	rs4920187	T	C	T	Sox1.mouse_HMG_2	9	1	-	13.035758770640443	6.127003991325223	CTGACTGACATTCAT
chr1	234109019	234109020	chr1:234109020:G:A	rs61824599	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	234271641	234271642	chr1:234271642:C:G	rs11587866	C	G	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	234435553	234435554	chr1:234435554:T:C	rs4920241	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	234452224	234452225	chr1:234452225:G:A	rs4920248	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	234580167	234580168	chr1:234580168:A:C	rs12097957	A	C	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	234585081	234585082	chr1:234585082:C:T	rs12132528	C	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr1	234641346	234641347	chr1:234641347:G:A	rs487770	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	234676570	234676571	chr1:234676571:G:T	rs73114245	G	T	G	Sox1.mouse_HMG_2	0	1	-	6.3581942072344235	7.027070412952779	CTGAATACCTTTCTT
chr1	234763962	234763963	chr1:234763963:G:A	rs17589498	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr1	234842649	234842650	chr1:234842650:G:A	rs188523191	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	234933556	234933557	chr1:234933557:T:C	rs115780901	T	C	T	Sox1.mouse_HMG_2	14	1	+	3.2486179875911465	2.3740056448684106	CTGAGTTACAGTCTT
chr1	235011814	235011815	chr1:235011815:T:C	rs1362648460	T	C	T	Sox1.mouse_HMG_2	0	1	-	7.362866282862175	6.358630050226974	AAAAATAACATTCAC
chr1	235048105	235048106	chr1:235048106:C:A	rs189002248	C	A	C	Sox1.mouse_HMG_2	9	1	+	3.946677548760947	10.85543232807617	CTGAATAAACTTCAG
chr1	235089283	235089284	chr1:235089284:T:A	rs10924240	T	A	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	235298048	235298049	chr1:235298049:C:T	rs11581782	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr1	235880829	235880830	chr1:235880830:G:T	rs78772920	G	T	G	Sox1.mouse_HMG_2	2	1	+	5.81953578273567	-1.077158548887041	AAGAATTCCATTTAG
chr1	235939442	235939443	chr1:235939443:A:G	rs12568363	A	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr1	236010080	236010081	chr1:236010081:A:C	rs7522023	A	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	236012026	236012027	chr1:236012027:C:A	rs3738531	C	A	C	Sox1.mouse_HMG_2	4	1	+	5.160005978014715	7.542067045881636	TTGGCTGGCATTCAT
chr1	236035630	236035631	chr1:236035631:T:C	rs34400720	T	C	-	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	236100380	236100381	chr1:236100381:T:A	rs17619300	T	A	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	236454814	236454815	chr1:236454815:A:T	rs1253620	A	T	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	236478875	236478876	chr1:236478876:G:A	rs12732513	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr1	236628766	236628767	chr1:236628767:T:C	rs4659460	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr1	236705376	236705377	chr1:236705377:A:G	rs10925201	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr1	236739654	236739655	chr1:236739655:T:C	rs7544174	T	C	T	Sox1.mouse_HMG_2	10	1	+	6.6449892854697	-0.20295229281058164	GTGAATATCATTTTG
chr1	236740490	236740491	chr1:236740491:C:T	rs2385494	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	236743363	236743364	chr1:236743364:G:A	rs12737976	G	A	G	Sox1.mouse_HMG_2	4	1	-	5.500998735659923	1.0616470343667714	CTGACTACCAGTTAG
chr1	236747836	236747837	chr1:236747837:A:G	rs10925211	A	G	A	Sox1.mouse_HMG_2	11	1	-	7.47714257923483	0.5683877999196089	ATGAATACCAGTGAT
chr1	237219970	237219971	chr1:237219971:A:G	rs17626494	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr1	237437562	237437563	chr1:237437563:T:C	rs7552202	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	237453031	237453032	chr1:237453032:G:A	rs2392692	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	237453057	237453058	chr1:237453058:C:G	rs2392691	C	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	237507816	237507817	chr1:237507817:A:C	rs2805426	A	C	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	237584377	237584378	chr1:237584378:A:G	rs2618707	A	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr1	237618066	237618067	chr1:237618067:G:A	rs140691407	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	237854685	237854686	chr1:237854686:C:T	rs148367455	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	237941327	237941328	chr1:237941328:A:G	rs114783979	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr1	237996698	237996699	chr1:237996699:T:C	rs2487103	T	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr1	238265182	238265183	chr1:238265183:T:A	rs10925602	T	A	T	Sox1.mouse_HMG_2	2	1	-	8.353048583123863	6.101756784517367	TTAAATTACAGTCAT
chr1	238329884	238329885	chr1:238329885:G:T	chr1:238329885:G:T	G	T	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr1	238752563	238752564	chr1:238752564:T:C	rs2841407	T	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr1	238778200	238778201	chr1:238778201:T:C	rs138806741	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr1	238778462	238778463	chr1:238778463:C:T	rs6429101	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	239111705	239111706	chr1:239111706:G:A	rs75188483	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr1	239133343	239133344	chr1:239133344:C:T	rs1848752	C	T	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr1	239269562	239269563	chr1:239269563:G:A	rs61837671	G	A	G	Sox1.mouse_HMG_2	7	1	-	8.903724601428385	8.442780147721281	ATGAATACCCTTCAA
chr1	239282682	239282683	chr1:239282683:G:T	rs59993374	G	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr1	239367301	239367302	chr1:239367302:T:C	rs72754626	T	C	T	Sox1.mouse_HMG_2	0	1	-	3.069122288957785	2.0648860563225844	ATGAATAGCAACCAT
chr1	239428484	239428485	chr1:239428485:A:G	rs72754668	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	239675205	239675206	chr1:239675206:G:A	rs1899611	G	A	A	Sox1.mouse_HMG_2	5	1	+	2.671345416042998	2.671345416042998	GGGAAGTACATTCAG
chr1	239834620	239834621	chr1:239834621:C:A	rs78319733	C	A	C	Sox1.mouse_HMG_2	12	1	+	3.772527815034705	-3.1279208354316586	GTGAATCCCACTCAG
chr1	239900065	239900066	chr1:239900066:T:C	rs16839051	T	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	239910318	239910319	chr1:239910319:G:A	rs10458442	G	A	g	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr1	239978103	239978104	chr1:239978104:T:A	rs61829423	T	A	t	Sox1.mouse_HMG_2	11	1	+	6.9686635953435045	0.059908816028284045	GAGAATTACATTCTC
chr1	240123152	240123153	chr1:240123153:T:C	rs3738434	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr1	240123171	240123172	chr1:240123172:T:C	rs374513550	T	C	T	Sox1.mouse_HMG_2	0	1	-	3.513106168365678	2.508869935730477	ATGAAACACAGTCAT
chr1	240349859	240349860	chr1:240349860:C:G	rs72767906	C	G	C	Sox1.mouse_HMG_2	10	1	-	4.070932152601097	-0.024411909954086375	TTGCATTGCAGTCAA
chr1	240425816	240425817	chr1:240425817:G:A	rs1414657	G	A	A	Sox1.mouse_HMG_2	12	1	-	3.362583278162004	-1.3100038255062514	TTGAAAAACATTCCT
chr1	240444748	240444749	chr1:240444749:G:A	rs2356388	G	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	240610857	240610858	chr1:240610858:C:T	rs143468269	C	T	C	Sox1.mouse_HMG_2	11	1	+	6.315768333598235	13.224523112913456	ATGAATACCAGCCAG
chr1	240612577	240612578	chr1:240612578:T:C	rs202045065	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr1	240613931	240613932	chr1:240613932:C:T	rs2076780	C	T	C	Sox1.mouse_HMG_2	6	1	+	2.9451760063161934	6.4565855742631655	CTGACTCTCATTCCT
chr1	240706525	240706526	chr1:240706526:G:T	rs10926337	G	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr1	241012454	241012455	chr1:241012455:G:A	rs605792	G	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr1	241500161	241500162	chr1:241500162:G:A	rs12759839	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	241500175	241500176	chr1:241500176:A:G	rs4660098	A	G	A	Sox1.mouse_HMG_2	12	1	+	7.402149089817489	7.402149089817489	CTGAATTCCATTAAA
chr1	241531506	241531507	chr1:241531507:C:A	rs12079341	C	A	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr1	241531519	241531520	chr1:241531520:A:C	rs12064150	A	C	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr1	241604065	241604066	chr1:241604066:A:G	rs769082285	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	241604096	241604097	chr1:241604097:A:G	rs151012198	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	241762933	241762934	chr1:241762934:T:C	rs11587279	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr1	241849105	241849106	chr1:241849106:C:T	rs4149853	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	242225029	242225030	chr1:242225030:T:C	rs77296969	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	242243573	242243574	chr1:242243574:A:G	rs78037986	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr1	242243608	242243609	chr1:242243609:T:C	rs421625	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	242431149	242431150	chr1:242431150:G:A	rs2580227	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr1	242785192	242785193	chr1:242785193:C:A	rs2809879	C	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	243114074	243114075	chr1:243114075:T:C	rs12079032	T	C	t	Sox1.mouse_HMG_2	4	1	-	4.395778745655079	-2.4256340235049936	ATGTATACCATTTAG
chr1	243222333	243222334	chr1:243222334:A:G	rs10926972	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	243344403	243344404	chr1:243344404:T:C	rs139427699	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr1	243514069	243514070	chr1:243514070:G:A	rs3006938	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr1	243525316	243525317	chr1:243525317:C:G	rs916074387	C	G	C	Sox1.mouse_HMG_2	0	1	+	3.5447078407506503	3.2093478138338067	CAAAATACCAGTCAC
chr1	243617914	243617915	chr1:243617915:A:T	rs320310	A	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	243628009	243628010	chr1:243628010:G:C	rs12739344	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	243798909	243798910	chr1:243798910:T:G	rs1378958393	T	G	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr1	244063057	244063058	chr1:244063058:T:A	rs114248736	T	A	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	244089106	244089107	chr1:244089107:C:G	rs2453197	C	G	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	244321824	244321825	chr1:244321825:C:T	rs10803197	C	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	244322367	244322368	chr1:244322368:T:C	rs4421572	T	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr1	244322410	244322411	chr1:244322411:T:C	rs5002490	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr1	244340417	244340418	chr1:244340418:C:G	rs533108	C	G	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr1	244352787	244352788	chr1:244352788:T:C	rs4658628	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	244360201	244360202	chr1:244360202:A:G	rs10927210	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	244450488	244450489	chr1:244450489:T:C	rs6667957	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	244537019	244537020	chr1:244537020:C:T	rs3005985	C	T	c	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr1	244869679	244869680	chr1:244869680:G:A	rs143859877	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	245036765	245036766	chr1:245036766:A:G	rs565883	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr1	245040098	245040099	chr1:245040099:T:C	rs599171	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.8071033051771055	3.802867072541904	AGTAATAACATTCAC
chr1	245393991	245393992	chr1:245393992:A:C	rs1173837	A	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr1	245564780	245564781	chr1:245564781:C:T	rs1771492	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr1	245857020	245857021	chr1:245857021:C:T	rs74667387	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr1	245857106	245857107	chr1:245857107:C:T	rs11582567	C	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr1	245857111	245857112	chr1:245857112:A:G	rs11578675	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr1	246020772	246020773	chr1:246020773:A:C	rs10157657	A	C	a	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr1	246034299	246034300	chr1:246034300:C:T	rs10924456	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	246099950	246099951	chr1:246099951:G:A	rs115710002	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr1	246110370	246110371	chr1:246110371:G:A	rs12040935	G	A	g	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr1	246218665	246218666	chr1:246218666:C:T	rs72774458	C	T	T	Sox1.mouse_HMG_2	14	1	-	5.07657883523744	4.911937587342492	TTGCATAGCAGTCAG
chr1	246569775	246569776	chr1:246569776:A:C	rs79617622	A	C	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr1	246793851	246793852	chr1:246793852:A:T	rs12122102	A	T	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	246800075	246800076	chr1:246800076:C:T	rs76130077	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr1	246948552	246948553	chr1:246948553:C:A	rs1691244	C	A	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr1	246948557	246948558	chr1:246948558:A:G	rs1779960	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.5822041927590735	-2.3265505865561473	TTGATTTACATTCTG
chr1	247216758	247216759	chr1:247216759:A:G	rs55961646	A	G	a	Sox1.mouse_HMG_2	6	1	+	4.15308300924792	2.712905587379281	TTGTATATCATTTAT
chr1	247406918	247406919	chr1:247406919:T:C	rs35020138	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr1	247406924	247406925	chr1:247406925:T:C	rs72771983	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr1	247435929	247435930	chr1:247435930:G:A	rs10754557	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr1	247457283	247457284	chr1:247457284:C:G	rs9988519	C	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	247473603	247473604	chr1:247473604:C:T	rs4925674	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr1	247841910	247841911	chr1:247841911:G:C	rs7522811	G	C	G	Sox1.mouse_HMG_2	2	1	+	6.27068701683311	0.8780700819866729	ATGAAAAACATTCTG
chr1	247906857	247906858	chr1:247906858:C:G	rs143975316	C	G	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr1	247999730	247999731	chr1:247999731:A:G	rs72763233	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr1	248189309	248189310	chr1:248189310:G:A	chr1:248189310:G:A	G	A	-	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr1	248189336	248189337	chr1:248189337:G:A	rs11204605	G	A	-	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	248372597	248372598	chr1:248372598:A:G	rs28848937	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr1	248372619	248372620	chr1:248372620:T:C	rs28750552	T	C	T	Sox1.mouse_HMG_2	14	1	+	7.2313098935607325	6.356697550837996	CTGACTACCACTCAT
chr1	248464745	248464746	chr1:248464746:G:T	rs9724898	G	T	.	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr1	248647344	248647345	chr1:248647345:G:T	rs2387786	G	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr1	248789036	248789037	chr1:248789037:G:A	rs4281354	G	A	g	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr1	248791208	248791209	chr1:248791209:A:C	rs1352665779	A	C	-	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr1	248791225	248791226	chr1:248791226:A:G	rs73150507	A	G	-	Sox1.mouse_HMG_2	1	1	-	4.879970656724461	0.23597834923122474	CTGAATACCCTTTAT
chr1	248872432	248872433	chr1:248872433:C:A	rs74939837	C	A	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr10	178481	178482	chr10:178482:T:C	rs145521623	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	382149	382150	chr10:382150:C:G	rs4881199	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr10	479287	479288	chr10:479288:A:G	chr10:479288:A:G	A	G	A	Sox1.mouse_HMG_2	0	1	-	3.9979949020348013	4.263938095804234	TGGAATTTCAGTCTT
chr10	479299	479300	chr10:479300:T:A	chr10:479300:T:A	T	A	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	581100	581101	chr10:581101:G:T	rs80181946	G	T	g	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	771430	771431	chr10:771431:G:A	rs114393579	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	790516	790517	chr10:790517:A:T	rs11253447	A	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	821594	821595	chr10:821595:C:G	rs56222464	C	G	c	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	852264	852265	chr10:852265:T:C	rs35370435	T	C	T	Sox1.mouse_HMG_2	13	1	-	3.1643528792603277	-1.7817648085123203	CTGGATTCCATTTAC
chr10	1036405	1036406	chr10:1036406:T:C	rs78273020	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	1036449	1036450	chr10:1036450:A:C	rs183834744	A	C	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	1162480	1162481	chr10:1162481:G:A	rs377068240	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	1310375	1310376	chr10:1310376:T:C	rs2892331	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	1367466	1367467	chr10:1367467:A:G	rs11250467	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	1374875	1374876	chr10:1374876:C:T	rs2820607	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	1396401	1396402	chr10:1396402:A:C	rs12779875	A	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	1476911	1476912	chr10:1476912:A:G	rs77058466	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr10	1501481	1501482	chr10:1501482:G:A	rs72764935	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	1692379	1692380	chr10:1692380:C:T	rs60346236	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	2037995	2037996	chr10:2037996:C:T	rs147136655	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr10	2122193	2122194	chr10:2122194:C:T	rs2065533	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	2122823	2122824	chr10:2122824:T:C	rs10903679	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	2767253	2767254	chr10:2767254:G:T	rs877694	G	T	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	2929394	2929395	chr10:2929395:T:C	rs1574188	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	2981735	2981736	chr10:2981736:G:T	rs7076644	G	T	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	3045574	3045575	chr10:3045575:T:A	rs115515701	T	A	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr10	3078443	3078444	chr10:3078444:C:A	rs6602022	C	A	N	Sox1.mouse_HMG_2	4	1	+	3.860562413372168	6.2426234812390895	CTGACTTGCAGTCCT
chr10	3162445	3162446	chr10:3162446:T:C	rs191488239	T	C	t	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	3195749	3195750	chr10:3195750:T:C	rs73581104	T	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	3285080	3285081	chr10:3285081:A:G	rs10904013	A	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	3353937	3353938	chr10:3353938:A:G	rs7893931	A	G	A	Sox1.mouse_HMG_2	0	1	-	3.988466598489861	4.254409792259294	TGGAATATTATTCAG
chr10	3389813	3389814	chr10:3389814:A:G	rs112207844	A	G	a	Sox1.mouse_HMG_2	13	1	+	4.615912006974878	-0.33020568079776946	TTGAAAGACAGTCAC
chr10	3389825	3389826	chr10:3389826:C:G	rs188987199	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	3412060	3412061	chr10:3412061:G:C	rs60745586	G	C	G	Sox1.mouse_HMG_2	14	1	-	11.305803770814334	11.02734799674933	ATAAATAGCATTCAC
chr10	3487200	3487201	chr10:3487201:C:A	rs189795231	C	A	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	3500568	3500569	chr10:3500569:G:A	rs835332	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr10	3500580	3500581	chr10:3500581:G:A	rs835333	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	3624154	3624155	chr10:3624155:A:T	rs148802282	A	T	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	3661445	3661446	chr10:3661446:T:C	rs2397330	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	3691538	3691539	chr10:3691539:T:C	rs10508261	T	C	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr10	3786596	3786597	chr10:3786597:C:T	rs115123320	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	3820127	3820128	chr10:3820128:C:T	rs17842279	C	T	C	Sox1.mouse_HMG_2	5	1	+	3.104433207938976	10.013187987254195	GTGAACGCCATTTAT
chr10	3828869	3828870	chr10:3828870:A:G	rs80316981	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	3838914	3838915	chr10:3838915:C:T	chr10:3838915:C:T	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	3877050	3877051	chr10:3877051:G:C	rs10795084	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	3975902	3975903	chr10:3975903:T:C	rs10751948	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr10	3986641	3986642	chr10:3986642:C:T	rs56401617	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	3987022	3987023	chr10:3987023:T:A	rs12570958	T	A	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	4033041	4033042	chr10:4033042:C:G	rs143291137	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	4061714	4061715	chr10:4061715:C:T	rs17256445	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	4176160	4176161	chr10:4176161:A:G	rs1008109867	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	4178115	4178116	chr10:4178116:C:T	rs17350653	C	T	T	Sox1.mouse_HMG_2	1	1	+	3.114356760320751	7.7583490678139855	ACGAATTGCTTTCAA
chr10	4266129	4266130	chr10:4266130:G:C	rs144212835	G	C	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	4470294	4470295	chr10:4470295:C:A	rs1904661	C	A	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	4511681	4511682	chr10:4511682:G:A	rs74111809	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	4556710	4556711	chr10:4556711:T:C	rs715987	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	4630702	4630703	chr10:4630703:C:T	rs12412551	C	T	C	Sox1.mouse_HMG_2	14	1	+	6.902407968884495	7.777020311607231	GTGAATGCCATGCAC
chr10	4638420	4638421	chr10:4638421:T:C	rs313446	T	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	4650020	4650021	chr10:4650021:T:C	rs7898983	T	C	T	Sox1.mouse_HMG_2	1	1	+	7.773903942002922	3.1299116345096873	CTGTATATCATTCAA
chr10	4711229	4711230	chr10:4711230:C:T	rs11252674	C	T	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	4754519	4754520	chr10:4754520:G:A	rs11596642	G	A	G	Sox1.mouse_HMG_2	6	1	-	3.559239597013499	7.070649164960471	CAGAATCCCAGTCAG
chr10	4768388	4768389	chr10:4768389:T:C	rs72768268	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	4786278	4786279	chr10:4786279:C:T	rs2167706	C	T	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	4808446	4808447	chr10:4808447:G:A	rs2961618	G	A	g	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	4837375	4837376	chr10:4837376:A:C	rs41336345	A	C	A	Sox1.mouse_HMG_2	4	1	+	3.489554142342309	1.107493074475388	TAGAATACCATACAG
chr10	5018332	5018333	chr10:5018333:T:G	rs1425373603	T	G	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	5265480	5265481	chr10:5265481:C:G	rs4881420	C	G	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	5336002	5336003	chr10:5336003:G:A	rs13376910	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	5465411	5465412	chr10:5465412:G:T	rs745759285	G	T	G	Sox1.mouse_HMG_2	8	1	+	4.3753030800432455	4.449411052196967	TGGAATACGATTCAG
chr10	5567868	5567869	chr10:5567869:G:C	rs4881481	G	C	G	Sox1.mouse_HMG_2	8	1	-	5.098103811040189	-0.6204308514955187	ATATATAACATTCAC
chr10	5589879	5589880	chr10:5589880:G:A	rs11599233	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	5873661	5873662	chr10:5873662:T:C	rs626040	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	5958904	5958905	chr10:5958905:A:G	rs8177709	A	G	A	Sox1.mouse_HMG_2	0	1	+	10.408388590786677	9.404152358151476	ATGACTTGCATTCTT
chr10	5958931	5958932	chr10:5958932:G:A	rs8177708	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr10	6225211	6225212	chr10:6225212:C:A	rs4747952	C	A	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	6245731	6245732	chr10:6245732:G:A	rs7906455	G	A	A	Sox1.mouse_HMG_2	12	1	-	5.282474035200668	0.609886931532413	TTGACTAGCCTTCAA
chr10	6410599	6410600	chr10:6410600:T:G	rs73621325	T	G	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	6459225	6459226	chr10:6459226:C:T	rs7099451	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	6601295	6601296	chr10:6601296:A:G	rs1964893	A	G	A	Sox1.mouse_HMG_2	13	1	+	4.10028991573429	-0.8458277720383583	GTGCATTACATTTAT
chr10	6603780	6603781	chr10:6603781:G:A	rs74113562	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.3519458355246465	-1.2924808548573394	AGGAATAACGTTCAA
chr10	6900473	6900474	chr10:6900474:T:C	rs34253260	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	6971008	6971009	chr10:6971009:A:G	rs72771846	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	6996697	6996698	chr10:6996698:G:A	rs2804134	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	7000307	7000308	chr10:7000308:G:A	rs10905087	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	7196052	7196053	chr10:7196053:C:G	rs2692803	C	G	G	Sox1.mouse_HMG_2	8	1	+	5.011781893101712	-0.7067527694339958	CTGACTTCCCTTCAA
chr10	7218764	7218765	chr10:7218765:C:T	rs1535864	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr10	7270133	7270134	chr10:7270134:G:A	rs2388046	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	7345860	7345861	chr10:7345861:C:T	rs61837686	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	7429050	7429051	chr10:7429051:T:A	rs13377145	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr10	7546558	7546559	chr10:7546559:G:A	rs17142788	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	7546564	7546565	chr10:7546565:G:A	rs10905180	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	7696447	7696448	chr10:7696448:C:T	rs10905219	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr10	7797261	7797262	chr10:7797262:G:C	rs1981015	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	8059463	8059464	chr10:8059464:A:C	rs3781094	A	C	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	8305075	8305076	chr10:8305076:C:T	rs67989634	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr10	8367474	8367475	chr10:8367475:A:G	rs149110969	A	G	a	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	8390463	8390464	chr10:8390464:T:C	rs11255676	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	8392700	8392701	chr10:8392701:T:C	rs2787131	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.889478902055042	-0.05663878571760639	AGGAATTTCATTTAA
chr10	8554812	8554813	chr10:8554813:C:T	rs7093997	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	8568710	8568711	chr10:8568711:G:T	rs10905408	G	T	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	8581435	8581436	chr10:8581436:C:G	rs66678385	C	G	C	Sox1.mouse_HMG_2	14	1	-	9.925393411409182	10.203849185474185	TTGAATTACATTTAG
chr10	8846606	8846607	chr10:8846607:G:A	rs2483941	G	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	8895629	8895630	chr10:8895630:G:A	rs3847419	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	9038062	9038063	chr10:9038063:G:C	rs1891532	G	C	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	9165854	9165855	chr10:9165855:A:T	rs11256101	A	T	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	10040812	10040813	chr10:10040813:G:C	rs17147126	G	C	G	Sox1.mouse_HMG_2	4	1	-	3.842296613332029	-0.5970550879611224	TTGTCTGGCATTCAA
chr10	10096205	10096206	chr10:10096206:T:C	rs11256490	T	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	10096488	10096489	chr10:10096489:A:G	rs11256492	A	G	A	Sox1.mouse_HMG_2	10	1	+	3.0353400301720637	7.130684092727248	AGGAATTGCAATCAG
chr10	10138798	10138799	chr10:10138799:A:T	rs72781407	A	T	T	Sox1.mouse_HMG_2	13	1	+	5.972716153762925	2.778352600604633	ATAAATAACATACAT
chr10	10209079	10209080	chr10:10209080:T:C	rs66757951	T	C	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr10	10209734	10209735	chr10:10209735:C:T	rs1885739	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	10270458	10270459	chr10:10270459:T:G	rs4749946	T	G	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	10610628	10610629	chr10:10610629:G:A	rs56231958	G	A	g	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	10650021	10650022	chr10:10650022:A:G	rs11597845	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	10685844	10685845	chr10:10685845:T:A	rs10905787	T	A	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	10786594	10786595	chr10:10786595:G:A	rs61664071	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	10824717	10824718	chr10:10824718:G:A	rs75380866	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.166156567348635	5.170392799983836	GTGAATTGCAGCCAG
chr10	10952844	10952845	chr10:10952845:T:C	rs7922245	T	C	T	Sox1.mouse_HMG_2	7	1	-	5.708216821631104	5.007162002090029	GTGAAAAACAGTCAG
chr10	11158673	11158674	chr10:11158674:A:G	rs7095683	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	11243337	11243338	chr10:11243338:G:A	rs2765977	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	11243343	11243344	chr10:11243344:A:C	rs2653526	A	C	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	11327906	11327907	chr10:11327907:C:T	rs9329334	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	11352809	11352810	chr10:11352810:A:G	rs3847424	A	G	A	Sox1.mouse_HMG_2	14	1	-	2.84422996264732	1.9696176199245843	CTGAAACACAGTCAT
chr10	11505792	11505793	chr10:11505793:T:C	rs59499128	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	11548660	11548661	chr10:11548661:C:T	rs35064649	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	11588228	11588229	chr10:11588229:A:G	rs61133364	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	11659042	11659043	chr10:11659043:C:A	rs7895283	C	A	c	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	11659191	11659192	chr10:11659192:T:A	rs77319087	T	A	t	Sox1.mouse_HMG_2	3	1	-	6.495590145794612	-0.4131646335206093	CTGAATAGCTGTCAT
chr10	11758229	11758230	chr10:11758230:T:G	rs7088450	T	G	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr10	11814393	11814394	chr10:11814394:C:A	rs7083664	C	A	C	Sox1.mouse_HMG_2	7	1	+	2.159611070008112	2.556295790676182	ATGAACACCCTTCAG
chr10	12043058	12043059	chr10:12043059:C:G	rs552893501	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	12130322	12130323	chr10:12130323:G:A	rs118098886	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr10	12329774	12329775	chr10:12329775:G:A	rs150491264	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	12393395	12393396	chr10:12393396:G:A	rs4747982	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	12455919	12455920	chr10:12455920:G:A	rs45441603	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	12490545	12490546	chr10:12490546:C:T	rs2478973	C	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	12534522	12534523	chr10:12534523:C:T	rs2004304	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	12549611	12549612	chr10:12549612:C:T	rs74116975	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	12562474	12562475	chr10:12562475:C:G	rs2768352	C	G	C	Sox1.mouse_HMG_2	10	1	-	2.468526579389007	-1.6268174831661768	GTGACTATCAGACAG
chr10	12631367	12631368	chr10:12631368:C:T	rs80253933	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr10	12637491	12637492	chr10:12637492:A:G	rs2399866	A	G	A	Sox1.mouse_HMG_2	13	1	+	6.12375512078002	1.1776374330073718	ATGACATCCATTCAC
chr10	12649576	12649577	chr10:12649577:T:C	rs17495691	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	12712723	12712724	chr10:12712724:G:A	rs147191309	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	12733700	12733701	chr10:12733701:G:A	rs182046928	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	12798281	12798282	chr10:12798282:C:T	rs914325	C	T	T	Sox1.mouse_HMG_2	0	1	+	5.454878915061661	5.1889357212922285	CTGACATCCATTCAC
chr10	12841419	12841420	chr10:12841420:G:C	rs78906372	G	C	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	12924652	12924653	chr10:12924653:G:A	rs1439915	G	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	12942271	12942272	chr10:12942272:G:A	rs928339	G	A	A	Sox1.mouse_HMG_2	8	1	-	4.099778423018004	-1.5446482673639825	CTGAATTCCAATTAT
chr10	12946207	12946208	chr10:12946208:T:C	rs59474076	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.028760628788445	-2.8191809494918356	GTGAATTCCATACTG
chr10	12965880	12965881	chr10:12965881:G:C	rs2580908	G	C	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	12977782	12977783	chr10:12977783:A:C	rs535073	A	C	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	12977803	12977804	chr10:12977804:A:G	rs535018	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.350524435967717	-1.5582303433475038	AAGAATTGCATTTAA
chr10	13088521	13088522	chr10:13088522:T:A	rs11258181	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr10	13121446	13121447	chr10:13121447:C:T	rs74120677	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	13184891	13184892	chr10:13184892:T:G	rs7897812	T	G	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	13234750	13234751	chr10:13234751:G:C	rs17152980	G	C	g	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr10	13239055	13239056	chr10:13239056:T:G	rs2181841	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	13302570	13302571	chr10:13302571:T:C	rs529382948	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.526695483222377	-3.382059296092843	GTGAATTCAGTTCAT
chr10	13417265	13417266	chr10:13417266:T:C	rs75818818	T	C	t	Sox1.mouse_HMG_2	9	1	-	5.377961725622489	-1.5307930536927306	ACCAATTCCATTCAC
chr10	13608852	13608853	chr10:13608853:A:G	rs10796100	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	13628037	13628038	chr10:13628038:T:C	rs11258485	T	C	t	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	13628849	13628850	chr10:13628850:A:G	rs7088328	A	G	g	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr10	13927918	13927919	chr10:13927919:A:G	rs4748064	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	14102202	14102203	chr10:14102203:C:A	rs7905895	C	A	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	14220110	14220111	chr10:14220111:G:C	rs6602717	G	C	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr10	14356225	14356226	chr10:14356226:C:T	rs7083480	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	14458874	14458875	chr10:14458875:G:C	rs149576182	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	14578807	14578808	chr10:14578808:T:C	rs142025900	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	14592365	14592366	chr10:14592366:G:A	rs35513076	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr10	14592382	14592383	chr10:14592383:T:G	rs77610675	T	G	T	Sox1.mouse_HMG_2	10	1	+	1.953944482312686	-0.7986530334124108	GGGAAAGCCATTCAC
chr10	14651949	14651950	chr10:14651950:C:T	rs7080083	C	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	14684505	14684506	chr10:14684506:G:A	rs114562619	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	14687374	14687375	chr10:14687375:A:T	rs78821547	A	T	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	14705510	14705511	chr10:14705511:A:G	rs2688833	A	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	14776870	14776871	chr10:14776871:A:G	rs12256790	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.9470520640453177	-2.874360705114754	TAGAATAACACTCAG
chr10	14820042	14820043	chr10:14820043:A:G	rs61746971	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr10	14887173	14887174	chr10:14887174:A:G	rs17156020	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	15235501	15235502	chr10:15235502:T:C	rs10906869	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	15278583	15278584	chr10:15278584:C:G	rs2138926	C	G	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	15359032	15359033	chr10:15359033:T:C	rs17156601	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	15726643	15726644	chr10:15726644:C:T	rs61637837	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr10	15775692	15775693	chr10:15775693:C:T	rs142924806	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr10	15803420	15803421	chr10:15803421:A:T	rs11253651	A	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	16148790	16148791	chr10:16148791:A:C	rs2991228	A	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	16381299	16381300	chr10:16381300:C:A	rs17318653	C	A	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr10	16441081	16441082	chr10:16441082:G:A	rs12572781	G	A	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr10	16772504	16772505	chr10:16772505:G:A	rs7087515	G	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	16953483	16953484	chr10:16953484:G:A	rs4747290	G	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	16968732	16968733	chr10:16968733:T:A	rs1687704	T	A	A	Sox1.mouse_HMG_2	13	1	-	4.292864786564405	1.0985012334061133	CTGACTGACAGTTAA
chr10	16968742	16968743	chr10:16968743:T:C	rs1687703	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.292864786564405	-2.615889992750815	CTGACTGACAGTTAA
chr10	17019385	17019386	chr10:17019386:T:C	rs7074849	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr10	17041757	17041758	chr10:17041758:A:G	rs12776170	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	17055263	17055264	chr10:17055264:C:A	rs10904868	C	A	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	17171861	17171862	chr10:17171862:G:T	rs61841794	G	T	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	17213689	17213690	chr10:17213690:C:T	rs72775098	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	17225716	17225717	chr10:17225717:C:T	rs75772967	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	17237517	17237518	chr10:17237518:C:T	rs3249	C	T	C	Sox1.mouse_HMG_2	8	1	+	7.977211330789452	2.332784640407466	TTGAATACCATTAAA
chr10	17516585	17516586	chr10:17516586:C:T	rs7069117	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	17563117	17563118	chr10:17563118:A:G	rs2186113	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	17586880	17586881	chr10:17586881:T:C	rs12772793	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	17586901	17586902	chr10:17586902:T:C	rs12772809	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.2788969280101306	-3.629857851305089	AGGAAGTCCATTCAG
chr10	17586905	17586906	chr10:17586906:C:T	rs12771472	C	T	C	Sox1.mouse_HMG_2	5	1	-	3.2788969280101306	3.2788969280101306	AGGAAGTCCATTCAG
chr10	17760849	17760850	chr10:17760850:C:G	rs3858191	C	G	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr10	17779946	17779947	chr10:17779947:T:C	rs951919294	T	C	T	Sox1.mouse_HMG_2	6	1	+	3.1351277046261052	-0.3762818633208661	CTGACTTCCTTTCTT
chr10	17920486	17920487	chr10:17920487:G:A	rs35434414	G	A	G	Sox1.mouse_HMG_2	0	1	-	7.162862706549965	6.896919512780532	CGGAATTACAGTCAG
chr10	17964832	17964833	chr10:17964833:C:T	rs12359511	C	T	c	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	18042617	18042618	chr10:18042618:A:G	rs537215405	A	G	A	Sox1.mouse_HMG_2	4	1	+	8.284669714155525	1.463256944995451	CTGAATAACAGTCGC
chr10	18045591	18045592	chr10:18045592:A:G	rs2488136	A	G	G	Sox1.mouse_HMG_2	7	1	+	5.366194520969179	4.665139701428103	CTCAATAACATTCGG
chr10	18143555	18143556	chr10:18143556:T:A	rs10764320	T	A	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	18146086	18146087	chr10:18146087:C:T	rs1331330	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	18195556	18195557	chr10:18195557:G:C	rs16916953	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	18215117	18215118	chr10:18215118:G:A	rs56405917	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	18215140	18215141	chr10:18215141:T:G	chr10:18215141:T:G	T	G	T	Sox1.mouse_HMG_2	0	1	-	5.87400229616504	5.205126090446685	ATGAATACCATACTG
chr10	18252244	18252245	chr10:18252245:G:A	rs368351076	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	18282321	18282322	chr10:18282322:G:T	rs56278429	G	T	G	Sox1.mouse_HMG_2	12	1	-	4.364120655705287	-2.536327994761076	CTGCATTCCATTCTG
chr10	18501928	18501929	chr10:18501929:T:C	rs10741083	T	C	T	Sox1.mouse_HMG_2	0	1	+	5.610909739156716	5.876852932926148	TTGACTTTCATTAAT
chr10	18533412	18533413	chr10:18533413:C:A	rs10828859	C	A	A	Sox1.mouse_HMG_2	8	1	+	6.2795721182900115	1.4300753027779138	CTGAATGCCATTTTC
chr10	18556311	18556312	chr10:18556312:G:A	rs11014872	G	A	-	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	18568623	18568624	chr10:18568624:T:C	rs61724306	T	C	-	Sox1.mouse_HMG_2	13	1	+	4.376633236000857	1.2502807800298028	TTGCATTCCATTCTC
chr10	18572021	18572022	chr10:18572022:T:G	rs117837566	T	G	T	Sox1.mouse_HMG_2	7	1	+	3.915688782293752	4.072263137127853	TTGCATTTCATTCTC
chr10	18650013	18650014	chr10:18650014:G:A	rs7070695	G	A	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	18650537	18650538	chr10:18650538:T:A	rs7095666	T	A	A	Sox1.mouse_HMG_2	0	1	-	4.651327524810841	3.71650812532305	ATGATTTGCATTCTA
chr10	19168539	19168540	chr10:19168540:A:G	rs12257317	A	G	g	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr10	19184870	19184871	chr10:19184871:A:G	rs78667503	A	G	A	Sox1.mouse_HMG_2	13	1	+	6.937472948432534	1.9913552606598857	TTTAATGACATTCAA
chr10	19194969	19194970	chr10:19194970:C:A	rs11008881	C	A	A	Sox1.mouse_HMG_2	8	1	+	3.5896323961034193	-1.259864419408679	CAGAAATACATTCAC
chr10	19638635	19638636	chr10:19638636:A:G	rs76296736	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	19850890	19850891	chr10:19850891:A:C	rs11594918	A	C	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	20147432	20147433	chr10:20147433:T:G	chr10:20147433:T:G	T	G	T	Sox1.mouse_HMG_2	7	1	+	6.666955313492094	6.823529668326195	TTGAAGTTCATTCAA
chr10	20147447	20147448	chr10:20147448:G:C	rs4504970	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	20173388	20173389	chr10:20173389:A:G	rs79843612	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	20180618	20180619	chr10:20180619:C:T	rs139626072	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.3818948925597834	-1.263507640456433	CCGATTATCATTCAG
chr10	20229470	20229471	chr10:20229471:A:C	rs147746923	A	C	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	20743297	20743298	chr10:20743298:A:G	rs912799	A	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	20891066	20891067	chr10:20891067:T:C	rs3791204	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.757588323768025	-2.0638244453920476	ATCAATATTATTCAC
chr10	20992280	20992281	chr10:20992281:T:C	rs7915437	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	21056001	21056002	chr10:21056002:T:A	rs2119240	T	A	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	21093258	21093259	chr10:21093259:G:C	rs106459	G	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr10	21255714	21255715	chr10:21255715:C:T	rs67484996	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	21513042	21513043	chr10:21513043:A:G	rs575838991	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.575461572616009	0.6667067933007894	GTGACTTAAATTCAC
chr10	21521688	21521689	chr10:21521689:A:C	rs4083949	A	C	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	21732300	21732301	chr10:21732301:T:C	rs192692870	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	22055237	22055238	chr10:22055238:A:G	rs4592322	A	G	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr10	22246992	22246993	chr10:22246993:C:T	rs78280603	C	T	C	Sox1.mouse_HMG_2	7	1	+	3.847690815627156	3.386746361920049	CTGAATTCCAGTTTG
chr10	22429556	22429557	chr10:22429557:G:T	rs75723675	G	T	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	22436306	22436307	chr10:22436307:C:T	rs925054574	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	22600890	22600891	chr10:22600891:T:C	rs2559520	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	22658096	22658097	chr10:22658097:A:G	rs7075499	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	22702457	22702458	chr10:22702458:T:C	rs180866541	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	23072184	23072185	chr10:23072185:C:T	rs79562159	C	T	-	Sox1.mouse_HMG_2	12	1	+	3.144334560862055	-1.5282525428062002	ATGAATAACCTTCCG
chr10	23352534	23352535	chr10:23352535:T:C	rs11013412	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr10	23437846	23437847	chr10:23437847:A:G	rs1995981	A	G	G	Sox1.mouse_HMG_2	13	1	+	5.9915142509300505	1.0453965631574025	CTGGCTAGCATTCAC
chr10	23611256	23611257	chr10:23611257:A:G	rs10764418	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	23820654	23820655	chr10:23820655:A:G	rs11013729	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr10	23884682	23884683	chr10:23884683:A:T	rs10764431	A	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	24153677	24153678	chr10:24153678:A:C	rs74588276	A	C	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	24303834	24303835	chr10:24303835:G:A	rs220366	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	24310287	24310288	chr10:24310288:A:T	rs12249363	A	T	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	24450128	24450129	chr10:24450129:T:A	rs76969263	T	A	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	24643118	24643119	chr10:24643119:C:T	rs73606531	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	24792925	24792926	chr10:24792926:T:C	rs11593521	T	C	T	Sox1.mouse_HMG_2	6	1	-	6.505237108486998	5.065059686618359	AAAAATATCATTCAC
chr10	24841782	24841783	chr10:24841783:T:C	rs11014258	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	24848842	24848843	chr10:24848843:A:C	rs1045873	A	C	A	Sox1.mouse_HMG_2	10	1	-	8.991046603549457	6.23844908782436	CTGAATAACATTTTT
chr10	25112893	25112894	chr10:25112894:A:T	rs74472565	A	T	a	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	25379255	25379256	chr10:25379256:G:A	rs1754250	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	25557903	25557904	chr10:25557904:C:A	rs34832714	C	A	C	Sox1.mouse_HMG_2	2	1	-	4.425445349456513	-2.471248982166198	GTGAACTACATTCTG
chr10	25816898	25816899	chr10:25816899:C:G	rs751007	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	25816922	25816923	chr10:25816923:T:C	rs58634457	T	C	T	Sox1.mouse_HMG_2	8	1	+	4.133512599789907	9.777939290171894	TTGACTTCTATTCTT
chr10	25903174	25903175	chr10:25903175:C:G	rs12764282	C	G	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr10	26087163	26087164	chr10:26087164:A:G	rs7906251	A	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr10	26169676	26169677	chr10:26169677:C:T	rs79925422	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	26309953	26309954	chr10:26309954:G:A	rs60698538	G	A	G	Sox1.mouse_HMG_2	8	1	-	11.919466962938317	6.275040272556331	TTGAATAACATTTAT
chr10	26393970	26393971	chr10:26393971:A:G	rs12413535	A	G	A	Sox1.mouse_HMG_2	12	1	+	4.263312521776716	4.263312521776716	ATGAATCTCATTAAG
chr10	26413606	26413607	chr10:26413607:C:T	rs2992300	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr10	26447548	26447549	chr10:26447549:C:T	rs11015114	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	26689503	26689504	chr10:26689504:A:G	rs10764634	A	G	G	Sox1.mouse_HMG_2	1	1	-	5.869018963422705	1.2250266559294731	ATGAACCCCATTCAT
chr10	26689513	26689514	chr10:26689514:G:A	rs9418574	G	A	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	26706051	26706052	chr10:26706052:C:G	rs2489581	C	G	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	26915150	26915151	chr10:26915151:A:G	rs1750263	A	G	-	Sox1.mouse_HMG_2	10	1	-	4.927616436525649	-1.920325141754632	ATGAATTAAGTTCAT
chr10	26938751	26938752	chr10:26938752:A:T	rs12572726	A	T	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	27390886	27390887	chr10:27390887:C:A	rs663263	C	A	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	27625378	27625379	chr10:27625379:C:G	rs2642308	C	G	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	27696345	27696346	chr10:27696346:A:G	rs11015952	A	G	G	Sox1.mouse_HMG_2	9	1	+	5.503678653353646	-1.4050761259615743	CCCAATAACATTCAA
chr10	27997737	27997738	chr10:27997738:A:G	rs9299595	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.614027462955026	-2.233914115325255	TTGAACACCATTTAT
chr10	28676325	28676326	chr10:28676326:A:G	rs75156543	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	28761798	28761799	chr10:28761799:A:G	rs1272603	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	28858900	28858901	chr10:28858901:T:G	rs12265370	T	G	T	Sox1.mouse_HMG_2	11	1	+	6.573009610381025	-0.33574516893419604	TTAAATAGCATTTAT
chr10	28988832	28988833	chr10:28988833:G:A	rs10826550	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	29010667	29010668	chr10:29010668:C:G	rs1539247	C	G	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	29133282	29133283	chr10:29133283:T:C	rs545545	T	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	29214804	29214805	chr10:29214805:C:T	rs563762401	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.4350450213592856	4.309657364082022	TTGAATAGCCTTTAC
chr10	29265454	29265455	chr10:29265455:C:A	rs11007491	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	29297553	29297554	chr10:29297554:T:C	rs10763704	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr10	29329911	29329912	chr10:29329912:A:G	rs746371	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.13979978025386	-2.768954999061361	ACAACTTACATTCAC
chr10	29370591	29370592	chr10:29370592:C:A	rs12220989	C	A	c	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	29430315	29430316	chr10:29430316:T:A	rs4749424	T	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	29482818	29482819	chr10:29482819:T:G	rs77049661	T	G	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	29515986	29515987	chr10:29515987:C:T	rs11007637	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	29588035	29588036	chr10:29588036:G:T	rs192311900	G	T	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	29598079	29598080	chr10:29598080:G:C	rs11597209	G	C	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	29600760	29600761	chr10:29600761:T:C	rs2505898	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.6521807819680205	-3.2565739973471994	GAGAACAACATTCAA
chr10	29600772	29600773	chr10:29600773:T:C	rs2505899	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	29731723	29731724	chr10:29731724:T:C	rs74564203	T	C	T	Sox1.mouse_HMG_2	0	1	+	3.8685295868456624	4.134472780615095	TGGAATAACATTGAC
chr10	29829280	29829281	chr10:29829281:C:T	rs7924138	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	29969594	29969595	chr10:29969595:C:T	rs16930891	C	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr10	30029415	30029416	chr10:30029416:C:T	rs11813359	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	30231447	30231448	chr10:30231448:G:T	rs76947872	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	30352529	30352530	chr10:30352530:C:T	rs1781279	C	T	.	Sox1.mouse_HMG_2	2	1	-	2.3084429541606504	-2.336959578855567	GTGTAAACCATTCAT
chr10	30364472	30364473	chr10:30364473:A:G	rs7094026	A	G	.	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	30553117	30553118	chr10:30553118:T:C	rs11008102	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	30597524	30597525	chr10:30597525:A:G	rs7079862	A	G	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	30682766	30682767	chr10:30682767:T:A	rs10454471	T	A	t	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	30748419	30748420	chr10:30748420:T:A	rs1874075	T	A	t	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	30831583	30831584	chr10:30831584:G:A	rs7095087	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	30887358	30887359	chr10:30887359:A:C	rs12254116	A	C	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	31001915	31001916	chr10:31001916:C:T	rs2994648	C	T	C	Sox1.mouse_HMG_2	13	1	-	2.3953384323730744	7.341456120145723	CTGATTTGCATTCGG
chr10	31140473	31140474	chr10:31140474:G:T	rs79708524	G	T	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	31204207	31204208	chr10:31204208:T:G	rs936572806	T	G	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	31404806	31404807	chr10:31404807:A:G	chr10:31404807:A:G	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr10	31649272	31649273	chr10:31649273:G:T	rs11008567	G	T	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	31947758	31947759	chr10:31947759:T:C	rs538487386	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	32112233	32112234	chr10:32112234:C:T	rs211429	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	32343563	32343564	chr10:32343564:A:G	rs927954	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	33010384	33010385	chr10:33010385:G:A	rs7901543	G	A	A	Sox1.mouse_HMG_2	2	1	+	5.108965369029474	0.46356283601325765	ATGTATGACATTCTC
chr10	33194168	33194169	chr10:33194169:C:A	rs41511045	C	A	C	Sox1.mouse_HMG_2	8	1	+	5.706806371629963	0.8573095561178649	ATGAAGTACAGTCAA
chr10	33211923	33211924	chr10:33211924:A:G	rs74571312	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	33228718	33228719	chr10:33228719:A:G	rs1331317	A	G	G	Sox1.mouse_HMG_2	3	1	+	7.016774139962568	0.10801936064734574	GGGACTATCATTCAA
chr10	33233924	33233925	chr10:33233925:T:C	rs75318989	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.346558289105899	-2.5621964902093226	TAGAATAGCATTGAT
chr10	33240904	33240905	chr10:33240905:C:G	rs2269089	C	G	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	33273761	33273762	chr10:33273762:G:C	rs191289602	G	C	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	33293028	33293029	chr10:33293029:C:T	rs112401330	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	33304893	33304894	chr10:33304894:A:G	rs11597915	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr10	33333761	33333762	chr10:33333762:G:A	rs557654960	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	33573798	33573799	chr10:33573799:G:A	rs3851083	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	33612831	33612832	chr10:33612832:G:T	rs116810669	G	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	33735861	33735862	chr10:33735862:T:A	rs73267245	T	A	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	33747169	33747170	chr10:33747170:G:A	rs2812669	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr10	33938510	33938511	chr10:33938511:G:C	rs224733	G	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	33941396	33941397	chr10:33941397:A:G	rs224747	A	G	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr10	34195409	34195410	chr10:34195410:C:T	rs1274476	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	34216935	34216936	chr10:34216936:T:C	rs12778087	T	C	T	Sox1.mouse_HMG_2	0	1	+	11.957513091579639	12.223456285349073	TTGAATGACATTCTT
chr10	34241108	34241109	chr10:34241109:A:G	rs12762239	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	34573375	34573376	chr10:34573376:C:A	rs11009820	C	A	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	34727696	34727697	chr10:34727697:C:T	rs4339985	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	34763133	34763134	chr10:34763134:G:A	rs10764001	G	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	34806658	34806659	chr10:34806659:G:C	rs7095898	G	C	C	Sox1.mouse_HMG_2	2	1	+	9.24818766151971	3.8555707266732693	CTGAATAGCATCCAT
chr10	34919139	34919140	chr10:34919140:G:A	rs17496856	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.098671273881768	-1.5457554165002176	ATGAATCTCATTAAA
chr10	34998721	34998722	chr10:34998722:T:G	rs17582416	T	G	.	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	35153919	35153920	chr10:35153920:G:T	rs7916992	G	T	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr10	35253681	35253682	chr10:35253682:G:T	rs12240638	G	T	G	Sox1.mouse_HMG_2	2	1	+	3.3126791867958523	-3.5840151448268593	ATGTAGACCATTCAT
chr10	35588557	35588558	chr10:35588558:C:T	rs12267250	C	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	35695102	35695103	chr10:35695103:C:T	rs77914710	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	35705786	35705787	chr10:35705787:A:C	rs56744142	A	C	A	Sox1.mouse_HMG_2	13	1	-	4.181631976063184	2.4298778414488287	CTGAACTTCATTCTC
chr10	35762704	35762705	chr10:35762705:A:T	rs16936320	A	T	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	35949414	35949415	chr10:35949415:T:A	rs11010330	T	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	36046704	36046705	chr10:36046705:C:A	rs10764075	C	A	c	Sox1.mouse_HMG_2	8	1	+	5.131710719021531	0.28221390350943143	ATAAATTACATGCAT
chr10	36046705	36046706	chr10:36046706:A:G	rs10764076	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.131710719021531	-1.77704406029369	ATAAATTACATGCAT
chr10	36115787	36115788	chr10:36115788:C:G	rs10508834	C	G	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr10	36178222	36178223	chr10:36178223:G:C	rs315635	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	36256884	36256885	chr10:36256885:G:C	rs1219598	G	C	G	Sox1.mouse_HMG_2	8	1	-	4.334238984149464	-1.3842956783862448	ATGATTTTCATTTAT
chr10	36555318	36555319	chr10:36555319:G:A	rs193120047	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	36610704	36610705	chr10:36610705:A:C	rs541436879	A	C	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	37535768	37535769	chr10:37535769:T:C	rs2505705	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr10	37831713	37831714	chr10:37831714:C:T	rs1208731	C	T	c	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	38011178	38011179	chr10:38011179:T:A	rs77552914	T	A	T	Sox1.mouse_HMG_2	10	1	+	4.432066125003438	-2.415875453276844	ACGTATTGCATTCAT
chr10	38454878	38454879	chr10:38454879:G:A	rs184689448	G	A	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	38527724	38527725	chr10:38527725:A:G	rs149329934	A	G	.	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	38527731	38527732	chr10:38527732:T:A	rs922968455	T	A	.	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	38801327	38801328	chr10:38801328:C:G	rs75226319	C	G	.	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	38913168	38913169	chr10:38913169:T:C	rs1365250703	T	C	.	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	41845975	41845976	chr10:41845976:C:T	rs766536860	C	T	.	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	41878667	41878668	chr10:41878668:G:A	rs62641334	G	A	.	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	41882269	41882270	chr10:41882270:A:G	rs201294441	A	G	.	Sox1.mouse_HMG_2	10	1	-	5.251245578723593	-1.5966959995566872	TTGCATTCCATTCTT
chr10	41914673	41914674	chr10:41914674:A:C	rs1324953000	A	C	.	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr10	42083662	42083663	chr10:42083663:C:G	rs1445915827	C	G	.	Sox1.mouse_HMG_2	2	1	-	7.1278997671991995	1.7352828323527625	TTGGATTCCATTCAA
chr10	42593470	42593471	chr10:42593471:T:G	rs75611698	T	G	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	42594589	42594590	chr10:42594590:A:G	rs74137907	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	42950845	42950846	chr10:42950846:G:A	rs77947964	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	42959061	42959062	chr10:42959062:G:A	rs78160272	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	43123035	43123036	chr10:43123036:T:C	rs2565201	T	C	C	Sox1.mouse_HMG_2	4	1	-	3.962199285610523	-2.8592134835495506	TCCAATGACATTCAG
chr10	43123041	43123042	chr10:43123042:C:T	rs3026776	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	43140691	43140692	chr10:43140692:C:T	rs114560924	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	43285533	43285534	chr10:43285534:C:T	rs11238502	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	43846183	43846184	chr10:43846184:C:T	rs760023277	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	43878091	43878092	chr10:43878092:C:T	rs73275998	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	43896048	43896049	chr10:43896049:T:C	rs74878412	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr10	43903743	43903744	chr10:43903744:A:C	rs7900414	A	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	43967128	43967129	chr10:43967129:C:T	rs4948796	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	43999209	43999210	chr10:43999210:G:A	rs7091447	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	44019681	44019682	chr10:44019682:C:T	rs1492704	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	44376654	44376655	chr10:44376655:A:G	rs148782438	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	44510949	44510950	chr10:44510950:G:A	rs1889923	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	44516844	44516845	chr10:44516845:C:G	rs7084757	C	G	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	44628143	44628144	chr10:44628144:A:C	rs114573477	A	C	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr10	44857781	44857782	chr10:44857782:A:T	rs1357757629	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	44857794	44857795	chr10:44857795:G:A	rs1855111	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.5937976097455815	1.9212105060773261	GTGACTCACATTCTT
chr10	44966358	44966359	chr10:44966359:G:A	rs147199696	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	45041786	45041787	chr10:45041787:G:A	rs1332621	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	45280700	45280701	chr10:45280701:C:T	rs1073450	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	45292712	45292713	chr10:45292713:G:A	rs58167894	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	45369511	45369512	chr10:45369512:A:C	rs7081004	A	C	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	45373000	45373001	chr10:45373001:G:T	rs6593482	G	T	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	45373062	45373063	chr10:45373063:C:T	rs547029510	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	45447263	45447264	chr10:45447264:T:G	rs17157798	T	G	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	46023803	46023804	chr10:46023804:T:C	rs932782008	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	46217715	46217716	chr10:46217716:G:A	rs376032406	G	A	g	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	46256606	46256607	chr10:46256607:G:C	rs7905972	G	C	.	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	46257669	46257670	chr10:46257670:C:T	rs191073147	C	T	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	46283387	46283388	chr10:46283388:C:T	rs11259769	C	T	.	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr10	46285324	46285325	chr10:46285325:C:A	chr10:46285325:C:A	C	A	.	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	46530174	46530175	chr10:46530175:A:G	rs28444926	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	46810535	46810536	chr10:46810536:G:A	rs1319881402	G	A	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	46992653	46992654	chr10:46992654:T:C	rs904646284	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	47134283	47134284	chr10:47134284:C:T	rs111799555	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	47185005	47185006	chr10:47185006:G:A	rs115971340	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	47185058	47185059	chr10:47185059:C:A	rs76386056	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	47309835	47309836	chr10:47309836:T:C	rs79816588	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.011781893101713	-1.8969728862135091	CTGACTTCCATGCAA
chr10	47496238	47496239	chr10:47496239:C:T	rs1304773031	C	T	c	Sox1.mouse_HMG_2	7	1	+	5.091909071334427	4.6309646176273205	GGAAATGCCATTCAT
chr10	48222564	48222565	chr10:48222565:A:G	rs12252237	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr10	48248024	48248025	chr10:48248025:C:T	rs386570	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	48271773	48271774	chr10:48271774:T:C	rs4838403	T	C	C	Sox1.mouse_HMG_2	10	1	+	10.123387580491254	3.2754460022109733	GTGAATACAATTCAG
chr10	48383674	48383675	chr10:48383675:C:T	rs2698761	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.4759816195511433	-1.1966054841171117	ATCAGTGCCATTCAT
chr10	48535733	48535734	chr10:48535734:A:G	rs11101376	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr10	48572555	48572556	chr10:48572556:G:A	rs7358135	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	48733021	48733022	chr10:48733022:A:G	rs7076662	A	G	G	Sox1.mouse_HMG_2	5	1	-	7.613835160672392	0.7050803813571725	ATTAATTTCATTCAA
chr10	48739437	48739438	chr10:48739438:T:C	rs17771583	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	48798139	48798140	chr10:48798140:C:T	rs186310786	C	T	C	Sox1.mouse_HMG_2	10	1	-	6.0254323903775004	1.9300883278223167	ATGACTGTCAGTCTC
chr10	48801197	48801198	chr10:48801198:C:G	rs11101504	C	G	C	Sox1.mouse_HMG_2	8	1	+	4.0483540099198025	-1.670180652615905	CAGAATAACAATCAA
chr10	48935540	48935541	chr10:48935541:A:G	rs150168946	A	G	A	Sox1.mouse_HMG_2	9	1	+	8.994304915442784	2.085550136127563	TTTAATAGCATTCAT
chr10	48935545	48935546	chr10:48935546:T:C	rs10776658	T	C	T	Sox1.mouse_HMG_2	14	1	+	8.994304915442784	8.11969257272005	TTTAATAGCATTCAT
chr10	48945928	48945929	chr10:48945929:T:G	chr10:48945929:T:G	T	G	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	49090428	49090429	chr10:49090429:C:T	rs79975322	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	49090475	49090476	chr10:49090476:A:G	rs7074818	A	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	49149152	49149153	chr10:49149153:G:A	rs2490838	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	49180545	49180546	chr10:49180546:T:C	rs138285863	T	C	t	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr10	49243962	49243963	chr10:49243963:G:C	rs7084397	G	C	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr10	50016029	50016030	chr10:50016030:C:T	rs544662698	C	T	.	Sox1.mouse_HMG_2	6	1	-	5.091909071334427	6.532086493203066	GGAAATGCCATTCAT
chr10	50169625	50169626	chr10:50169626:T:A	rs375802141	T	A	T	Sox1.mouse_HMG_2	9	1	-	5.302954628155589	-1.6058001511596323	ATCAATTACATTTAA
chr10	50329590	50329591	chr10:50329591:G:A	rs986315	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr10	50469661	50469662	chr10:50469662:T:C	rs4935165	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.7240650826036807	-4.1238764956766	CCTAATGACATTCAG
chr10	50510153	50510154	chr10:50510154:T:C	rs2064760	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	50538536	50538537	chr10:50538537:G:A	rs10826163	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	50626193	50626194	chr10:50626194:T:A	rs12571898	T	A	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	50629856	50629857	chr10:50629857:T:C	rs138780422	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	51564936	51564937	chr10:51564937:T:A	rs75703038	T	A	A	Sox1.mouse_HMG_2	13	1	+	7.108614210543823	10.302977763702115	GAGAATAGCATTCTC
chr10	51685392	51685393	chr10:51685393:C:T	rs7913405	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	51908106	51908107	chr10:51908107:C:T	rs6480564	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	52043994	52043995	chr10:52043995:A:C	rs17560636	A	C	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	52194431	52194432	chr10:52194432:A:G	rs11001130	A	G	A	Sox1.mouse_HMG_2	0	1	-	13.839456550881474	14.105399744650908	TTGAATAACAGTCAT
chr10	52207041	52207042	chr10:52207042:C:A	rs7898960	C	A	C	Sox1.mouse_HMG_2	2	1	+	4.10974140377861	4.856955805608832	TGCAATGGCATTCAT
chr10	52226692	52226693	chr10:52226693:A:T	rs1194520	A	T	A	Sox1.mouse_HMG_2	9	1	+	5.944212091373167	-0.9645426879420521	GTGAATGCCATTTTC
chr10	52301133	52301134	chr10:52301134:C:T	rs35377666	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.488489193654208	-0.15691333936200913	GTGAATTCAAGTCTT
chr10	52400757	52400758	chr10:52400758:G:C	rs74133332	G	C	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr10	52509017	52509018	chr10:52509018:G:A	rs1628654	G	A	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	52509039	52509040	chr10:52509040:T:G	rs139832802	T	G	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	52664092	52664093	chr10:52664093:C:G	rs12258451	C	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	52744839	52744840	chr10:52744840:C:T	rs4935045	C	T	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	52757911	52757912	chr10:52757912:A:G	rs7098284	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	52816809	52816810	chr10:52816810:C:T	rs7476743	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	53233017	53233018	chr10:53233018:C:T	rs1903945	C	T	T	Sox1.mouse_HMG_2	7	1	-	3.9539519695391645	4.655006789080239	ATAAATAGCATGCAA
chr10	53396543	53396544	chr10:53396544:A:C	rs10825015	A	C	C	Sox1.mouse_HMG_2	10	1	-	3.557685411266214	0.8050878955411173	CTGAATTGATTTCAT
chr10	53464365	53464366	chr10:53464366:G:T	rs75028855	G	T	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr10	53786842	53786843	chr10:53786843:G:C	rs144752030	G	C	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	53836741	53836742	chr10:53836742:A:G	rs1900455	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	53837070	53837071	chr10:53837071:A:C	rs574136205	A	C	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	53995839	53995840	chr10:53995840:G:C	rs2253647	G	C	G	Sox1.mouse_HMG_2	10	1	+	3.5139322064998244	-0.581411856055359	TTGACTCCCAGTCTT
chr10	54205355	54205356	chr10:54205356:T:A	rs7090306	T	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	55509058	55509059	chr10:55509059:T:C	rs10763215	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	55741007	55741008	chr10:55741008:A:C	rs145587685	A	C	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	55793506	55793507	chr10:55793507:A:G	rs73262547	A	G	a	Sox1.mouse_HMG_2	3	1	+	3.9539519695391636	-2.9548028097760555	ATAAAAAGCATTCAA
chr10	56084828	56084829	chr10:56084829:A:C	rs7097455	A	C	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	56294368	56294369	chr10:56294369:C:A	rs4272725	C	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	57184296	57184297	chr10:57184297:G:T	rs7094185	G	T	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	57695545	57695546	chr10:57695546:G:A	rs77446829	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	57951280	57951281	chr10:57951281:A:G	rs2255123	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	58259192	58259193	chr10:58259193:T:C	rs72795692	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.268710560300726	1.624718252807493	CTAAATACCATTTAC
chr10	58514288	58514289	chr10:58514289:C:A	rs10763553	C	A	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	58517788	58517789	chr10:58517789:A:C	rs1365740	A	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	58622397	58622398	chr10:58622398:T:C	rs114845477	T	C	T	Sox1.mouse_HMG_2	6	1	+	5.30335074938077	1.7919411814337973	AGGACTTTCATTCTT
chr10	58653435	58653436	chr10:58653436:C:A	rs2393462	C	A	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	58755707	58755708	chr10:58755708:A:T	rs4325270	A	T	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	58773604	58773605	chr10:58773605:C:T	rs10826239	C	T	T	Sox1.mouse_HMG_2	8	1	+	7.348932810027195	1.7045061196452087	TGGAATTGCAGTCAT
chr10	58797545	58797546	chr10:58797546:G:A	rs114030575	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	58808156	58808157	chr10:58808157:T:G	rs9415584	T	G	G	Sox1.mouse_HMG_2	12	1	+	5.803983850728303	3.5761223039301946	GTGAATTTCATTTTG
chr10	58808176	58808177	chr10:58808177:A:C	rs9416744	A	C	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	59077821	59077822	chr10:59077822:T:G	rs77306471	T	G	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	59702464	59702465	chr10:59702465:A:G	rs1171626	A	G	G	Sox1.mouse_HMG_2	13	1	-	4.7982716659557205	1.6719192099846656	CTGAATGACAGTTTT
chr10	59898662	59898663	chr10:59898663:T:C	rs1406523784	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	60032814	60032815	chr10:60032815:C:T	rs10994158	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	60032815	60032816	chr10:60032816:C:T	rs567038670	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	60032845	60032846	chr10:60032846:C:T	rs12257592	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.371848603963517	-1.300738499704738	AGGAAGGTCATTCAT
chr10	60434599	60434600	chr10:60434600:C:T	rs947959011	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	60606671	60606672	chr10:60606672:A:C	rs7894641	A	C	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	60629474	60629475	chr10:60629475:A:G	rs7069157	A	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	60780029	60780030	chr10:60780030:C:G	rs2260179	C	G	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	60808888	60808889	chr10:60808889:G:A	rs74467796	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	60808902	60808903	chr10:60808903:C:T	rs1871444	C	T	C	Sox1.mouse_HMG_2	3	1	-	7.52458448786727	14.433339267182491	TTGGATTACATTCAA
chr10	60901180	60901181	chr10:60901181:A:C	rs10821852	A	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	60944354	60944355	chr10:60944355:A:G	rs537314059	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	61000983	61000984	chr10:61000984:C:T	rs10994607	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	61163504	61163505	chr10:61163505:C:T	rs11818852	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	61163544	61163545	chr10:61163545:T:C	rs116123721	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr10	61346945	61346946	chr10:61346946:G:A	rs1014062640	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	61592044	61592045	chr10:61592045:C:A	rs2606117	C	A	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	61628284	61628285	chr10:61628285:T:C	rs78933103	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	61629821	61629822	chr10:61629822:A:G	rs7087202	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	61700527	61700528	chr10:61700528:A:C	chr10:61700528:A:C	A	C	A	Sox1.mouse_HMG_2	4	1	+	11.31666532880362	8.934604260936698	ATGAATGGCATTCTC
chr10	61792014	61792015	chr10:61792015:G:A	rs7070797	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	61830619	61830620	chr10:61830620:T:C	rs10994941	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	61830620	61830621	chr10:61830621:G:A	rs2588943	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	61890996	61890997	chr10:61890997:A:G	rs73272175	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr10	61940485	61940486	chr10:61940486:A:G	rs4562771	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr10	62278171	62278172	chr10:62278172:C:G	rs74474241	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	62341588	62341589	chr10:62341589:G:T	rs10740073	G	T	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	62405145	62405146	chr10:62405146:A:T	rs55733758	A	T	A	Sox1.mouse_HMG_2	10	1	-	4.872053042123653	-1.9758885361566274	CTGGCTTGCATTCAG
chr10	62443986	62443987	chr10:62443987:A:C	rs80060819	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	62514182	62514183	chr10:62514183:G:A	rs1878261	G	A	A	Sox1.mouse_HMG_2	4	1	-	11.350223379774496	6.910871678481342	TTGACTTGCATTCAA
chr10	62540571	62540572	chr10:62540572:A:C	rs78053936	A	C	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	62540580	62540581	chr10:62540581:G:T	rs35816896	G	T	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	62562320	62562321	chr10:62562321:T:G	rs74325491	T	G	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	62585040	62585041	chr10:62585041:T:C	rs76406857	T	C	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	62628604	62628605	chr10:62628605:A:G	rs10995239	A	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr10	62651527	62651528	chr10:62651528:C:T	rs10995261	C	T	c	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr10	62661211	62661212	chr10:62661212:C:A	rs10219104	C	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	62911515	62911516	chr10:62911516:G:A	rs7920310	G	A	g	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	63366534	63366535	chr10:63366535:G:A	rs7092222	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	63437548	63437549	chr10:63437549:A:C	rs77494594	A	C	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr10	63468062	63468063	chr10:63468063:C:T	rs114566895	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr10	63504412	63504413	chr10:63504413:G:C	rs80211554	G	C	G	Sox1.mouse_HMG_2	2	1	+	8.103425673580826	2.7108087387343875	CTGAATAGCATTAAG
chr10	63629020	63629021	chr10:63629021:C:A	chr10:63629021:C:A	C	A	C	Sox1.mouse_HMG_2	10	1	-	3.4685481776392515	6.22114569336435	AAGAATTACAGTCGC
chr10	64116925	64116926	chr10:64116926:A:C	rs147429255	A	C	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr10	64215333	64215334	chr10:64215334:A:T	rs4553263	A	T	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr10	64396071	64396072	chr10:64396072:G:A	rs2660093	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr10	64617242	64617243	chr10:64617243:C:T	rs7921148	C	T	T	Sox1.mouse_HMG_2	14	1	-	4.169996651751595	4.0053554038566475	ATAAATTCCATTCCG
chr10	64708503	64708504	chr10:64708504:G:C	rs55787819	G	C	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	64830169	64830170	chr10:64830170:A:G	rs3894600	A	G	.	Sox1.mouse_HMG_2	14	1	-	3.218959788746163	2.344347446023427	GTAAGTGCCATTCAT
chr10	64906739	64906740	chr10:64906740:A:C	rs16920539	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr10	65159540	65159541	chr10:65159541:A:T	rs10996247	A	T	A	Sox1.mouse_HMG_2	9	1	+	5.23380788078156	-1.674946898533661	ATCAATAACATTGAT
chr10	65254361	65254362	chr10:65254362:C:T	rs35993695	C	T	c	Sox1.mouse_HMG_2	9	1	-	4.821058262498169	11.72981304181339	AAGAATAACGTTCAG
chr10	65254362	65254363	chr10:65254363:G:A	rs56311884	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.821058262498169	-0.8233684278838171	AAGAATAACGTTCAG
chr10	65296711	65296712	chr10:65296712:C:T	rs2136611	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr10	65414521	65414522	chr10:65414522:A:G	rs10740206	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	65639869	65639870	chr10:65639870:C:A	rs10822601	C	A	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	65764996	65764997	chr10:65764997:T:C	rs10822629	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.55165756172196	-2.35709721759326	TTGACTGACATTAAA
chr10	65861546	65861547	chr10:65861547:G:T	rs35503142	G	T	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr10	65911554	65911555	chr10:65911555:C:T	rs1993183	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	66020968	66020969	chr10:66020969:G:A	rs10822694	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	66086121	66086122	chr10:66086122:A:G	rs3911783	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	66318722	66318723	chr10:66318723:C:T	rs4297361	C	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr10	66398409	66398410	chr10:66398410:A:G	rs2456740	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr10	66505559	66505560	chr10:66505560:G:A	rs72791600	G	A	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	66505567	66505568	chr10:66505568:A:G	rs72791601	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	67270004	67270005	chr10:67270005:G:A	rs7085384	G	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	67766070	67766071	chr10:67766071:C:A	rs11819175	C	A	-	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	67772617	67772618	chr10:67772618:G:A	rs7914077	G	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	67841482	67841483	chr10:67841483:T:A	rs11593015	T	A	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	68136048	68136049	chr10:68136049:G:A	rs79316877	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	68156683	68156684	chr10:68156684:G:A	rs10997957	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	68290211	68290212	chr10:68290212:C:T	rs77728892	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	68297603	68297604	chr10:68297604:G:A	rs78267180	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	68535016	68535017	chr10:68535017:T:G	rs1539316	T	G	-	Sox1.mouse_HMG_2	5	1	-	4.494862182603924	4.494862182603924	TTGAAATACATTCTG
chr10	68589214	68589215	chr10:68589215:C:T	rs7908570	C	T	C	Sox1.mouse_HMG_2	8	1	+	5.4784333515231864	-0.16599333885879938	ATGATTCACATTCAC
chr10	68602957	68602958	chr10:68602958:G:A	rs2795886	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.764385638631841	0.11898310561562486	GTGTATAAAATTCAT
chr10	69110524	69110525	chr10:69110525:G:T	rs7915836	G	T	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr10	69319644	69319645	chr10:69319645:C:T	rs75171090	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	69321965	69321966	chr10:69321966:G:C	rs1242722494	G	C	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	69371557	69371558	chr10:69371558:T:C	rs74571915	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	69408306	69408307	chr10:69408307:A:G	rs143013668	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	69438006	69438007	chr10:69438007:G:A	rs10998776	G	A	A	Sox1.mouse_HMG_2	14	1	+	2.910262702303027	2.7456214544080795	GTGAATAGAGTTCAG
chr10	69495076	69495077	chr10:69495077:A:G	rs7094449	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	69538698	69538699	chr10:69538699:G:A	rs1237105	G	A	A	Sox1.mouse_HMG_2	9	1	-	4.067560018158085	4.067560018158085	CAGAATTCCCTTCAT
chr10	69630698	69630699	chr10:69630699:C:G	rs2306141	C	G	C	Sox1.mouse_HMG_2	6	1	-	3.1316177785910138	0.2193801977712858	GTAAAGGCCATTCAT
chr10	69807254	69807255	chr10:69807255:C:G	rs942571	C	G	C	Sox1.mouse_HMG_2	12	1	+	6.877322914429055	-0.02312573603730858	GGGACTGACATTCAC
chr10	70191404	70191405	chr10:70191405:T:C	rs76577402	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	70258815	70258816	chr10:70258816:C:T	rs58896152	C	T	c	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	70299247	70299248	chr10:70299248:A:C	rs1043884	A	C	A	Sox1.mouse_HMG_2	1	1	-	2.062551273546715	-2.885912213025094	GTGACCTGCAGTCAC
chr10	70339260	70339261	chr10:70339261:G:C	rs71480651	G	C	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	70357602	70357603	chr10:70357603:G:C	rs142668380	G	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	70649894	70649895	chr10:70649895:G:C	rs10999451	G	C	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	70656493	70656494	chr10:70656494:A:G	rs77610246	A	G	A	Sox1.mouse_HMG_2	7	1	-	3.294552882404635	3.755497336111741	CAGAACATCATTCAG
chr10	70683583	70683584	chr10:70683584:G:C	rs75337354	G	C	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr10	70728688	70728689	chr10:70728689:T:C	rs4747091	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	70792932	70792933	chr10:70792933:G:T	rs7914625	G	T	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	70804123	70804124	chr10:70804124:A:T	rs10823624	A	T	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	70852278	70852279	chr10:70852279:T:C	rs79019914	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	70886208	70886209	chr10:70886209:G:A	rs57037268	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	71077887	71077888	chr10:71077888:A:G	rs12571689	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.0454610879146182	-1.90065659985803	ATGAATAGGTTTCAG
chr10	71093060	71093061	chr10:71093061:C:T	rs80116970	C	T	C	Sox1.mouse_HMG_2	7	1	-	6.600183399883354	7.30123821942443	TTGCCTAGCATTCAT
chr10	71093086	71093087	chr10:71093087:A:G	rs1891161	A	G	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	71094100	71094101	chr10:71094101:A:G	rs2894135	A	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	71263430	71263431	chr10:71263431:C:T	rs10823712	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	71294324	71294325	chr10:71294325:C:A	rs946977	C	A	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	71307894	71307895	chr10:71307895:T:A	rs10509333	T	A	T	Sox1.mouse_HMG_2	7	1	+	4.447620999192374	5.30525017356755	CAGCATATCATTCAT
chr10	71435107	71435108	chr10:71435108:A:G	rs34964037	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	71528472	71528473	chr10:71528473:G:A	rs141127152	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	71605150	71605151	chr10:71605151:G:A	rs2166637	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	71605252	71605253	chr10:71605253:A:T	rs10999912	A	T	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr10	71691695	71691696	chr10:71691696:G:A	rs1234327	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	71696620	71696621	chr10:71696621:A:G	rs7094357	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	71726666	71726667	chr10:71726667:G:A	rs7918082	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr10	71746739	71746740	chr10:71746740:A:G	rs78762605	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.001515319453687	-2.8198974497063856	GTGAATTGCAGCCAA
chr10	71746756	71746757	chr10:71746757:C:A	rs12248205	C	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	71755904	71755905	chr10:71755905:T:C	rs6480552	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	71755920	71755921	chr10:71755921:T:C	rs10999984	T	C	T	Sox1.mouse_HMG_2	0	1	-	8.91456135700752	7.910325124372318	ATTAATTACATTCAC
chr10	71771311	71771312	chr10:71771312:A:G	rs10762477	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	71974234	71974235	chr10:71974235:T:C	rs77455139	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	72051154	72051155	chr10:72051155:C:T	rs11000155	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	72051155	72051156	chr10:72051156:G:C	rs1245577	G	C	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr10	72097825	72097826	chr10:72097826:A:G	rs759557004	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	72097832	72097833	chr10:72097833:A:C	rs147703665	A	C	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	72553069	72553070	chr10:72553070:T:C	rs577028483	T	C	T	Sox1.mouse_HMG_2	9	1	+	3.524078503284873	3.524078503284873	CTGAATAGATTTCAC
chr10	72553072	72553073	chr10:72553073:C:T	rs79554558	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.524078503284873	-1.1485086003833815	CTGAATAGATTTCAC
chr10	72557431	72557432	chr10:72557432:T:C	rs1004709456	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	72638940	72638941	chr10:72638941:T:C	rs3009516	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	72889580	72889581	chr10:72889581:A:G	rs141682568	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	73045106	73045107	chr10:73045107:T:C	rs150524379	T	C	T	Sox1.mouse_HMG_2	11	1	+	6.958382811296647	0.04962803198142676	CTGAATCACATTTAC
chr10	73054643	73054644	chr10:73054644:A:T	rs78405383	A	T	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	73093393	73093394	chr10:73093394:G:A	rs79229872	G	A	g	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	73094385	73094386	chr10:73094386:A:G	rs7095810	A	G	G	Sox1.mouse_HMG_2	11	1	-	3.318935390804881	-3.5898193885103393	CTCAAGTCCATTCAT
chr10	73496665	73496666	chr10:73496666:C:A	rs7099640	C	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	73496677	73496678	chr10:73496678:C:T	rs7099753	C	T	T	Sox1.mouse_HMG_2	10	1	+	5.85245716544332	12.700398743723598	GTGACTGACACTCAT
chr10	73595831	73595832	chr10:73595832:G:A	rs76436642	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	73790157	73790158	chr10:73790158:C:A	rs2292307	C	A	C	Sox1.mouse_HMG_2	7	1	+	2.977721754932056	3.3744064756001255	CTGACTGCCTGTCAT
chr10	73794782	73794783	chr10:73794783:C:G	rs7908825	C	G	C	Sox1.mouse_HMG_2	2	1	-	2.7645912567679294	-2.6280256780785085	CTGAATTCCTGTCTT
chr10	73983976	73983977	chr10:73983977:T:C	rs79155612	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	74017385	74017386	chr10:74017386:G:A	rs11000849	G	A	-	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	74153336	74153337	chr10:74153337:G:A	rs137866511	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	74153349	74153350	chr10:74153350:T:C	rs60648533	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	74206607	74206608	chr10:74206608:A:G	rs6480723	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	74250124	74250125	chr10:74250125:G:T	rs7092245	G	T	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	74255557	74255558	chr10:74255558:G:C	rs12360119	G	C	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr10	74589206	74589207	chr10:74589207:G:A	rs142848381	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.3201869934400694	-2.3242396969419175	TTGAAACTCATTCAG
chr10	74747174	74747175	chr10:74747175:C:A	rs2485954	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	74989386	74989387	chr10:74989387:A:G	rs149611671	A	G	A	Sox1.mouse_HMG_2	14	1	+	3.7345741443293416	3.8992153922242894	CAGAATTACATTCCA
chr10	75049786	75049787	chr10:75049787:C:T	rs114703581	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr10	75238472	75238473	chr10:75238473:A:G	rs7894555	A	G	G	Sox1.mouse_HMG_2	4	1	+	6.965161386449587	0.14374861728951432	GTGAATCTCATTCTG
chr10	75409009	75409010	chr10:75409010:T:A	rs181699388	T	A	T	Sox1.mouse_HMG_2	13	1	+	3.724575018383897	6.918938571542189	TTGATTTTCATTCTG
chr10	75636756	75636757	chr10:75636757:T:G	rs10437387	T	G	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	75773741	75773742	chr10:75773742:C:G	rs74980671	C	G	C	Sox1.mouse_HMG_2	0	1	+	6.376167790952285	6.040807764035441	CTGAATATGAGTCAG
chr10	76049901	76049902	chr10:76049902:C:A	rs1898068	C	A	A	Sox1.mouse_HMG_2	7	1	-	7.231952626965262	7.075378272131163	AGAAATAGCATTCAT
chr10	76118191	76118192	chr10:76118192:T:C	rs12771083	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	76118220	76118221	chr10:76118221:C:A	chr10:76118221:C:A	C	A	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr10	76208678	76208679	chr10:76208679:T:C	rs2117795	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	76320091	76320092	chr10:76320092:T:C	rs2758962	T	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr10	76382360	76382361	chr10:76382361:G:A	rs57778837	G	A	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr10	76583903	76583904	chr10:76583904:T:C	rs139547703	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	76618841	76618842	chr10:76618842:T:C	rs78070631	T	C	t	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	76640949	76640950	chr10:76640950:T:G	rs12416389	T	G	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	76975229	76975230	chr10:76975230:T:C	rs10762744	T	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	77104998	77104999	chr10:77104999:A:G	rs1004585	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	77243316	77243317	chr10:77243317:C:T	rs189854705	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	77258682	77258683	chr10:77258683:C:T	rs513489	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	77319989	77319990	chr10:77319990:A:T	rs11002117	A	T	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	77455668	77455669	chr10:77455669:T:C	rs166991	T	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	77687877	77687878	chr10:77687878:G:A	rs142756415	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr10	77948959	77948960	chr10:77948960:A:G	rs1781807	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.230931339016646	-1.7151863487560024	TTGACGAACAGTCAA
chr10	77984045	77984046	chr10:77984046:C:A	rs752196385	C	A	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	78087296	78087297	chr10:78087297:A:G	rs118052062	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	78315417	78315418	chr10:78315418:C:T	rs79539223	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	78337010	78337011	chr10:78337011:C:T	rs56386083	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	78357299	78357300	chr10:78357300:G:C	rs11002520	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	78388467	78388468	chr10:78388468:A:G	rs7920205	A	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	78394292	78394293	chr10:78394293:C:T	rs72808295	C	T	C	Sox1.mouse_HMG_2	10	1	-	3.4334674624862864	-0.6618766000688966	ATGAAGTCCAGTCTT
chr10	78459089	78459090	chr10:78459090:A:G	rs12356345	A	G	A	Sox1.mouse_HMG_2	14	1	+	4.382321711571092	4.54696295946604	GTGACTACAATTCTA
chr10	78459108	78459109	chr10:78459109:A:G	rs141174864	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr10	78471180	78471181	chr10:78471181:A:G	rs61851141	A	G	G	Sox1.mouse_HMG_2	9	1	+	4.073092407480415	-2.8356623718348053	TGGACTTACATTCTG
chr10	78472537	78472538	chr10:78472538:G:A	rs4979820	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	78777619	78777620	chr10:78777620:A:T	rs139250896	A	T	A	Sox1.mouse_HMG_2	14	1	-	6.399195476375512	5.081486111692826	ATGGCTGCCATTCAT
chr10	78777647	78777648	chr10:78777648:T:C	rs34230536	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	78914023	78914024	chr10:78914024:T:C	rs67705449	T	C	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	78960458	78960459	chr10:78960459:A:G	rs112634910	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	79099997	79099998	chr10:79099998:A:G	rs56038371	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	79202782	79202783	chr10:79202783:C:T	rs192804533	C	T	C	Sox1.mouse_HMG_2	13	1	-	11.576519545686514	16.522637233459164	GTGAATAACATTCGT
chr10	79305613	79305614	chr10:79305614:C:G	rs113334887	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	79317900	79317901	chr10:79317901:G:A	rs372536263	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.6710786925203225	2.0266520021383343	GTCAATGGCATTCAA
chr10	79412928	79412929	chr10:79412929:A:C	rs11002965	A	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	79419797	79419798	chr10:79419798:C:T	rs144029471	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr10	79437420	79437421	chr10:79437421:T:G	rs4980083	T	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	79824454	79824455	chr10:79824455:C:T	rs7921922	C	T	-	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	79920192	79920193	chr10:79920193:G:A	rs45558131	G	A	g	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	80037216	80037217	chr10:80037217:G:C	rs116087422	G	C	-	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr10	80146149	80146150	chr10:80146150:G:A	rs112825907	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.326155753764183	-2.3182709366178025	GTGACTAACAGGCAG
chr10	80146151	80146152	chr10:80146152:T:C	rs139605310	T	C	T	Sox1.mouse_HMG_2	6	1	-	3.326155753764183	1.885978331895544	GTGACTAACAGGCAG
chr10	80264459	80264460	chr10:80264460:C:T	rs73299582	C	T	.	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	80345156	80345157	chr10:80345157:T:C	rs536229557	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	80555533	80555534	chr10:80555534:T:C	rs11186029	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr10	80597938	80597939	chr10:80597939:G:T	rs34515119	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr10	80855628	80855629	chr10:80855629:C:A	rs68121878	C	A	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	81056152	81056153	chr10:81056153:G:A	rs11188201	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	81219309	81219310	chr10:81219310:G:A	rs7908787	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr10	81569567	81569568	chr10:81569568:A:C	rs12414831	A	C	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr10	81817793	81817794	chr10:81817794:C:T	rs78843744	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr10	81817802	81817803	chr10:81817803:A:T	rs186485494	A	T	A	Sox1.mouse_HMG_2	0	1	+	3.3247396344883593	2.3899202350005684	ATTAATACCGTTCAT
chr10	82575920	82575921	chr10:82575921:G:T	rs676826	G	T	G	Sox1.mouse_HMG_2	7	1	-	4.067560018158086	4.464244738826156	CAGAAATCCATTCAT
chr10	82652049	82652050	chr10:82652050:A:G	rs601285	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	82741839	82741840	chr10:82741840:C:G	rs17100658	C	G	C	Sox1.mouse_HMG_2	14	1	-	4.166341055817092	4.444796829882095	TTGAGTTTCAGTCAG
chr10	82866632	82866633	chr10:82866633:T:C	rs555571	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.171226369450374	-1.6501863997096997	TTGAATAACATCCTA
chr10	82866643	82866644	chr10:82866644:C:T	rs555538	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	83140904	83140905	chr10:83140905:A:G	rs10509466	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.689715123310206	-2.2190396560050147	CAGAATTTCATTTAG
chr10	83273300	83273301	chr10:83273301:C:T	rs10886057	C	T	T	Sox1.mouse_HMG_2	1	1	-	4.4319650447978685	4.736436223876443	AGGAATTCCATGCAT
chr10	83469832	83469833	chr10:83469833:C:T	rs10749309	C	T	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	83543508	83543509	chr10:83543509:G:A	rs78448513	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	83609506	83609507	chr10:83609507:C:A	chr10:83609507:C:A	C	A	C	Sox1.mouse_HMG_2	3	1	-	6.4602327846830345	6.4602327846830345	TTGGCTTACATTCAT
chr10	83949828	83949829	chr10:83949829:T:C	rs7099618	T	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	84016326	84016327	chr10:84016327:C:T	rs12267163	C	T	T	Sox1.mouse_HMG_2	12	1	+	5.114384765433632	0.44179766176537644	CTGAATAATATTCGG
chr10	84267842	84267843	chr10:84267843:A:T	rs4615967	A	T	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	84456470	84456471	chr10:84456471:A:G	rs10887298	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	84613850	84613851	chr10:84613851:C:T	rs574081440	C	T	C	Sox1.mouse_HMG_2	4	1	+	2.4238256252715615	-2.015526076021588	CTGACCTCCAGTCAG
chr10	84826810	84826811	chr10:84826811:T:A	rs112488972	T	A	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	84927844	84927845	chr10:84927845:G:T	rs56882813	G	T	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	84943565	84943566	chr10:84943566:C:T	rs10128531	C	T	C	Sox1.mouse_HMG_2	14	1	+	12.363633694376885	13.23824603709962	CTGACTTCCATTCAC
chr10	84990996	84990997	chr10:84990997:C:T	rs1933954	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	85593042	85593043	chr10:85593043:G:A	rs2664397	G	A	A	Sox1.mouse_HMG_2	7	1	-	2.719763403677637	2.2588189499705305	CTCAAGGCCATTCAT
chr10	86170801	86170802	chr10:86170802:G:A	rs12266620	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	86279123	86279124	chr10:86279124:C:A	rs7895744	C	A	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	86328436	86328437	chr10:86328437:G:C	rs35926391	G	C	G	Sox1.mouse_HMG_2	7	1	-	3.698593083259901	3.3942229843868947	GCGCATACCATTCAC
chr10	86675368	86675369	chr10:86675369:A:G	rs12268509	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr10	86675374	86675375	chr10:86675375:T:C	rs12240646	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	86753160	86753161	chr10:86753161:C:T	rs58334200	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	86756104	86756105	chr10:86756105:G:T	rs145691881	G	T	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	86779195	86779196	chr10:86779196:C:A	rs117347487	C	A	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr10	87171979	87171980	chr10:87171980:G:A	rs11202366	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	87590008	87590009	chr10:87590009:G:A	rs942425	G	A	A	Sox1.mouse_HMG_2	14	1	+	4.637375359110031	4.472734111215083	AGGAATTACAGTCTG
chr10	87705233	87705234	chr10:87705234:A:G	rs4933458	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	87744586	87744587	chr10:87744587:G:A	rs7913763	G	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	87744634	87744635	chr10:87744635:A:G	rs11202536	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	87769655	87769656	chr10:87769656:T:C	rs111314760	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.827798604177199	3.387621182308561	ATGACTAATATTTAT
chr10	87772011	87772012	chr10:87772012:C:T	rs184728331	C	T	T	Sox1.mouse_HMG_2	0	1	+	14.264751721719627	13.998808527950192	CTGAATGACATTCAG
chr10	88206713	88206714	chr10:88206714:C:A	rs577880	C	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	88468404	88468405	chr10:88468405:G:A	rs2488271	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	88598380	88598381	chr10:88598381:A:G	rs17345638	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	88759634	88759635	chr10:88759635:G:A	rs303461	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr10	88832349	88832350	chr10:88832350:G:A	rs1214550	G	A	G	Sox1.mouse_HMG_2	1	1	+	4.299724174947899	4.604195354026475	CGGAAAAGCATTCAT
chr10	88869971	88869972	chr10:88869972:C:T	rs7076970	C	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	88937111	88937112	chr10:88937112:G:C	rs1441735	G	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	89334428	89334429	chr10:89334429:A:C	rs7916398	A	C	.	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	89342731	89342732	chr10:89342732:T:C	rs1332333	T	C	C	Sox1.mouse_HMG_2	10	1	+	4.730904254974278	-2.1170373233060027	CTCACTCACATTCAT
chr10	89503332	89503333	chr10:89503333:G:A	rs78107726	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr10	89517855	89517856	chr10:89517856:C:G	rs7903979	C	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	89612086	89612087	chr10:89612087:C:T	rs3802655	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.120003442957094	-0.5253990900591208	ACGCATAGCATTCAG
chr10	89857625	89857626	chr10:89857626:A:G	rs1924715	A	G	A	Sox1.mouse_HMG_2	4	1	+	6.27068701683311	-0.5507257523269613	ATGAAAAACATTCTG
chr10	89862186	89862187	chr10:89862187:G:A	chr10:89862187:G:A	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr10	90047036	90047037	chr10:90047037:G:C	rs34606109	G	C	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr10	90321299	90321300	chr10:90321300:C:G	rs7092811	C	G	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	90321335	90321336	chr10:90321336:A:C	rs943316	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	90400695	90400696	chr10:90400696:A:G	rs12358059	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	90417192	90417193	chr10:90417193:A:G	rs114197613	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	90417232	90417233	chr10:90417233:G:A	rs1341820	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	90451456	90451457	chr10:90451457:C:T	rs10881798	C	T	C	Sox1.mouse_HMG_2	3	1	+	5.1859476741727715	5.1859476741727715	CTGCATATCAGTCAG
chr10	90451601	90451602	chr10:90451602:A:G	rs137981854	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr10	90751746	90751747	chr10:90751747:G:C	rs11186298	G	C	G	Sox1.mouse_HMG_2	7	1	-	5.62359478300938	5.3192246841363735	GTGAATTCCAGGCAT
chr10	90816632	90816633	chr10:90816633:T:C	rs11813096	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	90854644	90854645	chr10:90854645:G:A	rs11186338	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	90969296	90969297	chr10:90969297:G:A	rs4933633	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	91000026	91000027	chr10:91000027:A:G	rs61857871	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	91077005	91077006	chr10:91077006:G:A	rs3852502	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	91512224	91512225	chr10:91512225:T:A	rs12245101	T	A	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	91557954	91557955	chr10:91557955:C:T	rs11186613	C	T	t	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	91587539	91587540	chr10:91587540:C:A	rs2149825	C	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	91653061	91653062	chr10:91653062:G:T	rs11186644	G	T	G	Sox1.mouse_HMG_2	7	1	-	4.555525698152164	4.952210418820234	ATAACTACCATTTAC
chr10	91672448	91672449	chr10:91672449:T:C	rs79197300	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	91883698	91883699	chr10:91883699:G:A	rs111761697	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr10	91884005	91884006	chr10:91884006:T:C	rs145233079	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	92003579	92003580	chr10:92003580:A:T	rs2797647	A	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	92238014	92238015	chr10:92238015:T:G	chr10:92238015:T:G	T	G	T	Sox1.mouse_HMG_2	9	1	-	2.482721662920583	-4.4260331163946365	GTGGCTCCCATTCAT
chr10	92267435	92267436	chr10:92267436:A:G	rs9804247	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	92742776	92742777	chr10:92742777:G:A	rs118103533	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr10	92756710	92756711	chr10:92756711:G:A	rs12784232	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	92826270	92826271	chr10:92826271:T:C	rs11187186	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	92837257	92837258	chr10:92837258:C:T	rs111586433	C	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	92876609	92876610	chr10:92876610:G:A	rs1409387	G	A	A	Sox1.mouse_HMG_2	1	1	+	2.366463824453705	2.6709350035322803	CGGAATTGCACTCAG
chr10	93116519	93116520	chr10:93116520:G:C	rs376789697	G	C	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	93289167	93289168	chr10:93289168:A:G	rs1776070	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	93289207	93289208	chr10:93289208:A:G	rs1746485	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr10	93299361	93299362	chr10:93299362:T:A	rs11187376	T	A	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	93413514	93413515	chr10:93413515:G:A	rs17108647	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	93476197	93476198	chr10:93476198:C:T	rs11187447	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	93865823	93865824	chr10:93865824:C:T	rs116473088	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	93874443	93874444	chr10:93874444:T:C	rs2042614	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	93895732	93895733	chr10:93895733:G:C	rs10882362	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr10	94214450	94214451	chr10:94214451:T:C	rs10882405	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr10	94397764	94397765	chr10:94397765:C:T	rs77663909	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	94402242	94402243	chr10:94402243:T:C	rs552772114	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.246896973994316	-2.5745157951657567	ATGTATTTCATTTAT
chr10	94402246	94402247	chr10:94402247:T:G	rs187727356	T	G	T	Sox1.mouse_HMG_2	0	1	-	4.246896973994316	3.5780207682759575	ATGTATTTCATTTAT
chr10	94409218	94409219	chr10:94409219:A:G	rs55857865	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	95266700	95266701	chr10:95266701:T:C	rs7912686	T	C	T	Sox1.mouse_HMG_2	3	1	-	8.460229925489209	1.5514751461739857	TTGACTTCCATTCTA
chr10	95297113	95297114	chr10:95297114:G:A	rs12778481	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	95456172	95456173	chr10:95456173:A:G	rs7074761	A	G	G	Sox1.mouse_HMG_2	6	1	+	5.216307686215499	3.7761302643468584	TTGAATACCAGGCAA
chr10	95542766	95542767	chr10:95542767:C:A	rs10786218	C	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	95573476	95573477	chr10:95573477:T:C	rs7912555	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	96129213	96129214	chr10:96129214:T:G	rs3789925	T	G	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	96228696	96228697	chr10:96228697:C:T	rs12357751	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	96244623	96244624	chr10:96244624:A:G	rs144880289	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	96244664	96244665	chr10:96244665:C:T	rs149071047	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	96652042	96652043	chr10:96652043:T:C	rs72821008	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	97089583	97089584	chr10:97089584:G:A	rs2817687	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr10	97292761	97292762	chr10:97292762:A:C	rs77530280	A	C	.	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr10	97659777	97659778	chr10:97659778:A:G	rs77962804	A	G	.	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr10	97810575	97810576	chr10:97810576:G:A	rs4919146	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr10	98159218	98159219	chr10:98159219:A:G	rs4468282	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	98276451	98276452	chr10:98276452:T:C	rs7915743	T	C	t	Sox1.mouse_HMG_2	9	1	+	4.77997236833048	4.77997236833048	CTGAATTGCTGTCAC
chr10	98422814	98422815	chr10:98422815:C:T	rs74154467	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	98619421	98619422	chr10:98619422:A:T	rs10748747	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr10	98905531	98905532	chr10:98905532:G:T	rs4919264	G	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	99019088	99019089	chr10:99019089:T:C	rs9633707	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	99174261	99174262	chr10:99174262:C:G	rs10883287	C	G	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr10	99538070	99538071	chr10:99538071:A:G	rs12253760	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	99603073	99603074	chr10:99603074:C:T	rs11190177	C	T	C	Sox1.mouse_HMG_2	0	1	+	3.295937321810089	3.0299941280406566	CTGAAGGGCATTCTA
chr10	99619165	99619166	chr10:99619166:T:C	rs7908026	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	99787358	99787359	chr10:99787359:T:G	rs10786571	T	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	99874021	99874022	chr10:99874022:C:T	rs2256678	C	T	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	99942715	99942716	chr10:99942716:G:A	rs11190334	G	A	.	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	100080361	100080362	chr10:100080362:T:A	rs11596211	T	A	T	Sox1.mouse_HMG_2	9	1	-	3.0083090879228456	-3.9004456913923744	ATGGATAGCATCCAT
chr10	100085789	100085790	chr10:100085790:C:T	rs34236122	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr10	100085790	100085791	chr10:100085791:G:A	rs11190387	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	100116978	100116979	chr10:100116979:C:G	rs2862991	C	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	100520929	100520930	chr10:100520930:G:A	rs10883504	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.760805376373359	-0.8836213140086284	CTGAATTACCTTCTG
chr10	100668544	100668545	chr10:100668545:C:T	rs2489009	C	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	100668578	100668579	chr10:100668579:C:G	rs2489010	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	100791965	100791966	chr10:100791966:G:C	rs4917910	G	C	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr10	100873793	100873794	chr10:100873794:C:T	rs11190733	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	100873799	100873800	chr10:100873800:G:A	rs185066563	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	101155611	101155612	chr10:101155612:C:T	rs4919528	C	T	T	Sox1.mouse_HMG_2	4	1	+	4.98224200338634	0.5428903020931903	CTGACTGACATTAAG
chr10	101364728	101364729	chr10:101364729:G:C	rs7091024	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	102476887	102476888	chr10:102476888:G:A	rs3740409	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	102666253	102666254	chr10:102666254:T:C	rs4919667	T	C	C	Sox1.mouse_HMG_2	1	1	+	2.7805892614353507	-1.8634030460578836	GTGACTTTCAGGCAT
chr10	102666419	102666420	chr10:102666420:G:A	rs4244354	G	A	G	Sox1.mouse_HMG_2	14	1	-	9.248908847097981	10.123521189820716	CTGACTCACATTCAC
chr10	102773564	102773565	chr10:102773565:C:T	rs553258	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	102836070	102836071	chr10:102836071:G:A	rs284847	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	103500768	103500769	chr10:103500769:T:C	rs79268645	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr10	103500776	103500777	chr10:103500777:A:G	rs10748843	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	103512000	103512001	chr10:103512001:A:G	rs2281859	A	G	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	103513394	103513395	chr10:103513395:T:C	rs58843488	T	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr10	103740761	103740762	chr10:103740762:T:C	rs879544	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr10	103872872	103872873	chr10:103872873:A:T	rs79453661	A	T	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	103885422	103885423	chr10:103885423:A:G	rs11598840	A	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	103968521	103968522	chr10:103968522:G:A	rs7097109	G	A	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	104215319	104215320	chr10:104215320:C:T	rs189157212	C	T	C	Sox1.mouse_HMG_2	5	1	+	2.914491901370347	9.823246680685568	CAGAACTCCATTCAG
chr10	104300071	104300072	chr10:104300072:C:T	rs968619637	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr10	104304656	104304657	chr10:104304657:T:C	rs11191994	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	104612810	104612811	chr10:104612811:A:G	rs151285204	A	G	a	Sox1.mouse_HMG_2	1	1	-	3.4334674624862864	-1.2105248450069448	ATGAAGTCCAGTCTT
chr10	104886916	104886917	chr10:104886917:G:A	rs17117859	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr10	104908914	104908915	chr10:104908915:C:G	rs117856040	C	G	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	105069290	105069291	chr10:105069291:C:G	rs7907702	C	G	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	105121710	105121711	chr10:105121711:A:G	rs10884095	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr10	105150312	105150313	chr10:105150313:C:G	rs1377014	C	G	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	105150474	105150475	chr10:105150475:G:A	rs574719515	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	105308808	105308809	chr10:105308809:T:C	rs2418753	T	C	T	Sox1.mouse_HMG_2	14	1	-	3.038366892376523	3.2030081402714705	GGGATTACCATTCAA
chr10	105697559	105697560	chr10:105697560:C:G	rs17119358	C	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr10	105837859	105837860	chr10:105837860:G:C	rs116886508	G	C	G	Sox1.mouse_HMG_2	12	1	-	5.718464081444572	-1.1819845690217914	GTGAAAAGCATTCTT
chr10	105950785	105950786	chr10:105950786:C:T	rs17119884	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	106290441	106290442	chr10:106290442:T:C	rs10884293	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr10	106347917	106347918	chr10:106347918:A:G	rs7079609	A	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	106365814	106365815	chr10:106365815:G:T	rs11592677	G	T	G	Sox1.mouse_HMG_2	5	1	+	3.104433207938976	10.013187987254195	GTGAAGGCCATTTAT
chr10	106395542	106395543	chr10:106395543:G:A	rs7077490	G	A	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr10	106402474	106402475	chr10:106402475:T:G	chr10:106402475:T:G	T	G	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	106402497	106402498	chr10:106402498:A:G	rs79705277	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.5760314330948555	0.9320391256016213	ATAAATACCATGCAT
chr10	106496663	106496664	chr10:106496664:G:A	rs12412964	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.108463281830693	-2.5359634085512934	TTGACAGACAGTCAT
chr10	106513351	106513352	chr10:106513352:T:C	rs11192931	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	106717810	106717811	chr10:106717811:T:C	rs821944	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	106732427	106732428	chr10:106732428:G:A	rs556602966	G	A	G	Sox1.mouse_HMG_2	12	1	-	7.655791075061582	2.983203971393326	ATGACTTGCAGTCTT
chr10	106774684	106774685	chr10:106774685:A:G	rs12248264	A	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	107019675	107019676	chr10:107019676:G:T	rs932860	G	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	107068113	107068114	chr10:107068114:C:T	rs61867227	C	T	c	Sox1.mouse_HMG_2	1	1	+	2.2747617755804974	6.918754083073732	GCGAATTGCTTTCAG
chr10	107133806	107133807	chr10:107133807:T:C	rs864262	T	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr10	107202743	107202744	chr10:107202744:T:C	rs2050618	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	107215399	107215400	chr10:107215400:C:T	rs9888087	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	107861025	107861026	chr10:107861026:A:G	rs115748272	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr10	108151483	108151484	chr10:108151484:C:T	rs418692	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	108357464	108357465	chr10:108357465:C:T	rs10884625	C	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr10	108704478	108704479	chr10:108704479:T:C	rs75424247	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	108903186	108903187	chr10:108903187:T:C	rs73346633	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr10	109573969	109573970	chr10:109573970:A:G	rs10884802	A	G	g	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	109946804	109946805	chr10:109946805:A:T	rs188981163	A	T	A	Sox1.mouse_HMG_2	9	1	+	4.735887587716613	-2.1728671915986078	CTCACTAACATTCTG
chr10	109992692	109992693	chr10:109992693:T:C	rs17126926	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	110016090	110016091	chr10:110016091:G:A	rs7071509	G	A	A	Sox1.mouse_HMG_2	8	1	-	4.497203185406961	-1.147223504975025	TTAACTGACAGTCAC
chr10	110059785	110059786	chr10:110059786:A:G	rs35333119	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr10	110327820	110327821	chr10:110327821:G:A	rs4918496	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	110396305	110396306	chr10:110396306:C:G	rs4917559	C	G	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	110415038	110415039	chr10:110415039:T:C	rs79768919	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	110455803	110455804	chr10:110455804:A:T	rs735324	A	T	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr10	110500386	110500387	chr10:110500387:G:T	rs74158105	G	T	G	Sox1.mouse_HMG_2	2	1	+	5.133120944544513	-1.763573387078198	AAGAATTACATGCAT
chr10	110637289	110637290	chr10:110637290:C:T	rs950953973	C	T	c	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	110679877	110679878	chr10:110679878:A:G	rs10749044	A	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	110701432	110701433	chr10:110701433:C:T	rs75379819	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	110704261	110704262	chr10:110704262:A:G	rs4918568	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	110710378	110710379	chr10:110710379:C:T	rs7091450	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr10	110802280	110802281	chr10:110802281:T:C	rs17128003	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	111083483	111083484	chr10:111083484:G:A	rs76934870	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr10	111394544	111394545	chr10:111394545:C:A	rs10885157	C	A	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	111557042	111557043	chr10:111557043:T:C	rs12098748	T	C	T	Sox1.mouse_HMG_2	14	1	+	3.6465979606504146	2.7719856179276787	ATGGCTGCCAGTCAT
chr10	111581307	111581308	chr10:111581308:T:C	rs11597832	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr10	111831558	111831559	chr10:111831559:C:G	rs11818066	C	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr10	111974143	111974144	chr10:111974144:G:T	rs150650117	G	T	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr10	112266102	112266103	chr10:112266103:T:G	rs17129672	T	G	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	112287049	112287050	chr10:112287050:T:A	rs7904701	T	A	T	Sox1.mouse_HMG_2	3	1	-	4.585792703691107	-2.322962075624114	TTGACTAAGAGTCAG
chr10	112663998	112663999	chr10:112663999:T:C	rs7082408	T	C	C	Sox1.mouse_HMG_2	7	1	-	3.65792638917155	2.956871569630474	ATAAAAGACATTCAC
chr10	113329080	113329081	chr10:113329081:G:C	rs73364281	G	C	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr10	113412298	113412299	chr10:113412299:A:G	rs117599260	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.533904351035548	-3.3748504282796725	TTGAATGGCAATCTC
chr10	113649309	113649310	chr10:113649310:A:T	rs2900988	A	T	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	114009798	114009799	chr10:114009799:A:G	rs77759758	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	114022506	114022507	chr10:114022507:C:T	rs115384982	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr10	114082173	114082174	chr10:114082174:A:C	rs35856171	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	114317024	114317025	chr10:114317025:A:G	rs139900812	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.222446590281054	-2.686308189034168	CTGAATGACACTCTG
chr10	114354262	114354263	chr10:114354263:T:C	rs7922542	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr10	114356099	114356100	chr10:114356100:C:T	rs4144103	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	114571508	114571509	chr10:114571509:G:A	rs77941690	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	114691307	114691308	chr10:114691308:C:T	rs11196881	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	114821449	114821450	chr10:114821450:G:T	rs116905900	G	T	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	114867357	114867358	chr10:114867358:C:T	rs7075888	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr10	114867400	114867401	chr10:114867401:T:G	rs7094072	T	G	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr10	115788978	115788979	chr10:115788979:G:A	rs9332403	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	116050249	116050250	chr10:116050250:G:C	rs180573	G	C	G	Sox1.mouse_HMG_2	5	1	-	5.986672595696106	5.986672595696106	GTGAACAACAGTCAC
chr10	116050265	116050266	chr10:116050266:C:A	rs180572	C	A	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr10	116102231	116102232	chr10:116102232:G:T	rs2694782	G	T	T	Sox1.mouse_HMG_2	2	1	+	6.08969633682486	-0.806997994797852	TTGTATTACAGTCAT
chr10	116102247	116102248	chr10:116102248:G:A	rs3781517	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	116139572	116139573	chr10:116139573:C:T	rs77064159	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	116163712	116163713	chr10:116163713:A:G	rs4751955	A	G	G	Sox1.mouse_HMG_2	10	1	-	4.028760628788444	-2.8191809494918365	GTGCATTCCATTCTG
chr10	116296654	116296655	chr10:116296655:C:T	rs35997739	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	116420034	116420035	chr10:116420035:G:A	rs78756028	G	A	A	Sox1.mouse_HMG_2	8	1	-	5.833887008053461	0.18946031767147364	TTAAATGACATTTAT
chr10	116725941	116725942	chr10:116725942:G:A	rs7909807	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr10	116948373	116948374	chr10:116948374:C:T	rs114349382	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	116974050	116974051	chr10:116974051:G:C	rs7083142	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	117437565	117437566	chr10:117437566:T:C	rs2487693	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	117530063	117530064	chr10:117530064:C:G	rs11593815	C	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	117775444	117775445	chr10:117775445:A:G	rs4752105	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.015178837607394	-1.9309388501652545	CTCAATACCATTAAG
chr10	117807769	117807770	chr10:117807770:G:A	rs35922072	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr10	117933067	117933068	chr10:117933068:G:T	rs7073284	G	T	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	118307937	118307938	chr10:118307938:G:A	rs17618810	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr10	118345201	118345202	chr10:118345202:A:G	rs117049938	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	118523440	118523441	chr10:118523441:T:C	rs879135	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr10	118528778	118528779	chr10:118528779:T:G	rs76527683	T	G	T	Sox1.mouse_HMG_2	5	1	+	4.407411159821591	-2.501343619493628	ATGGATTTCATTCTA
chr10	118630109	118630110	chr10:118630110:T:G	rs2250172	T	G	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	118666528	118666529	chr10:118666529:T:C	rs11198554	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	118983475	118983476	chr10:118983476:C:T	rs72826530	C	T	c	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr10	119162562	119162563	chr10:119162563:T:C	rs35233430	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr10	119563660	119563661	chr10:119563661:T:C	rs10886513	T	C	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	119564463	119564464	chr10:119564464:A:G	rs4752331	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	119654723	119654724	chr10:119654724:T:C	rs196336	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr10	119933395	119933396	chr10:119933396:A:C	rs2901218	A	C	A	Sox1.mouse_HMG_2	4	1	+	1.9539444823126864	-0.42811658555423493	GGGAATGCCTTTCAC
chr10	120337239	120337240	chr10:120337240:G:A	rs574485855	G	A	g	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr10	120337268	120337269	chr10:120337269:C:A	rs112026580	C	A	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr10	120416042	120416043	chr10:120416043:A:T	rs2148476	A	T	A	Sox1.mouse_HMG_2	14	1	+	7.973369985397455	9.29107935008014	GTGACTAAAATTCAA
chr10	120452240	120452241	chr10:120452241:T:G	rs7085288	T	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	120479337	120479338	chr10:120479338:G:A	rs4752423	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr10	120506155	120506156	chr10:120506156:A:G	rs10510070	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	120538517	120538518	chr10:120538518:G:T	rs2420724	G	T	G	Sox1.mouse_HMG_2	2	1	+	5.9263945862563085	-0.9702997453664027	GAGAATGACATTCTA
chr10	120734702	120734703	chr10:120734703:A:G	rs11199523	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	120850878	120850879	chr10:120850879:C:G	rs10886785	C	G	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	120850917	120850918	chr10:120850918:C:T	rs149036466	C	T	C	Sox1.mouse_HMG_2	6	1	+	5.4201349574081075	8.931544525355077	ATTAATCTCATTCAT
chr10	120939820	120939821	chr10:120939821:C:T	rs4752477	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	121092793	121092794	chr10:121092794:G:C	chr10:121092794:G:C	G	C	.	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	121333734	121333735	chr10:121333735:G:A	rs116795894	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	121338734	121338735	chr10:121338735:C:T	rs7895870	C	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	121521976	121521977	chr10:121521977:A:C	rs2912764	A	C	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	121629367	121629368	chr10:121629368:A:G	rs10437462	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.286172732783482	-2.6225820465317384	ACGACTTGCATTTAT
chr10	121644341	121644342	chr10:121644342:C:T	rs17102382	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr10	122010714	122010715	chr10:122010715:C:A	rs142742438	C	A	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr10	122118863	122118864	chr10:122118864:C:T	rs113183005	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr10	122151829	122151830	chr10:122151830:T:C	rs7078373	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	122232258	122232259	chr10:122232259:A:G	rs10788262	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.922990315708933	1.0142355363937132	ATGAATTGCATGCAG
chr10	122275673	122275674	chr10:122275674:T:G	rs11817245	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr10	122421171	122421172	chr10:122421172:A:G	rs190404754	A	G	A	Sox1.mouse_HMG_2	11	1	-	5.175474459163315	-1.733280320151905	ACCAATGACATTCAC
chr10	122421909	122421910	chr10:122421910:A:G	rs181367337	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	122494329	122494330	chr10:122494330:A:T	rs2268352	A	T	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	123230342	123230343	chr10:123230343:G:A	rs113854227	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr10	123288094	123288095	chr10:123288095:T:C	rs182259489	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	123398381	123398382	chr10:123398382:C:T	rs181348465	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	123470669	123470670	chr10:123470670:T:C	rs705150	T	C	T	Sox1.mouse_HMG_2	7	1	-	8.377650370301174	7.676595550760099	TTTAATAACATTCAA
chr10	123515846	123515847	chr10:123515847:T:C	rs4980297	T	C	T	Sox1.mouse_HMG_2	5	1	-	2.811296031243317	2.811296031243317	GGGAAAAGCATTCAG
chr10	123554817	123554818	chr10:123554818:C:T	rs114771965	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr10	123573689	123573690	chr10:123573690:C:T	rs1767132	C	T	T	Sox1.mouse_HMG_2	8	1	+	7.199980466336124	1.5555537759541371	TTAAATTACAGTCAG
chr10	123705194	123705195	chr10:123705195:T:C	rs55875646	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.9406424915805434	-2.968112287734676	CTGAATGTCAGTTTT
chr10	123728398	123728399	chr10:123728399:C:T	rs12358957	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr10	123750125	123750126	chr10:123750126:T:C	rs2362676	T	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	123750430	123750431	chr10:123750431:C:G	rs2362675	C	G	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	123870479	123870480	chr10:123870480:G:A	rs4132652	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	123995467	123995468	chr10:123995468:A:G	rs3934974	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr10	124182905	124182906	chr10:124182906:G:A	rs911153911	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr10	124356737	124356738	chr10:124356738:C:T	rs76662059	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr10	124401860	124401861	chr10:124401861:A:G	rs17619406	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr10	124521961	124521962	chr10:124521962:G:A	chr10:124521962:G:A	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.3407914826131	2.879847028905993	CTCACTGCCAGTCAG
chr10	124646696	124646697	chr10:124646697:C:G	rs545133520	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	124710207	124710208	chr10:124710208:C:A	rs74700267	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	124724552	124724553	chr10:124724553:C:T	rs141588695	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr10	124864401	124864402	chr10:124864402:C:T	rs79942261	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr10	124943984	124943985	chr10:124943985:G:A	rs77497062	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr10	124949866	124949867	chr10:124949867:A:G	rs75836769	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	125006503	125006504	chr10:125006504:T:C	rs76042663	T	C	T	Sox1.mouse_HMG_2	14	1	-	4.50239656795287	4.667037815847817	TTGAATTTCAGTCCA
chr10	125093019	125093020	chr10:125093020:C:T	rs529536073	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	125114862	125114863	chr10:125114863:G:A	rs7912889	G	A	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr10	125145611	125145612	chr10:125145612:C:T	rs139121751	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr10	125273714	125273715	chr10:125273715:T:G	rs9422868	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	125471933	125471934	chr10:125471934:T:G	rs139445344	T	G	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr10	125487728	125487729	chr10:125487729:C:T	rs11595727	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.575600557851454	5.276655377392529	CTGCATAGCATTTAT
chr10	125515597	125515598	chr10:125515598:G:T	rs9422893	G	T	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr10	125784089	125784090	chr10:125784090:T:C	rs73379251	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr10	125795664	125795665	chr10:125795665:A:G	rs2281957	A	G	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr10	126034776	126034777	chr10:126034777:T:C	rs10751539	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	126137703	126137704	chr10:126137704:C:T	rs78253196	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr10	126137711	126137712	chr10:126137712:A:G	rs11244828	A	G	A	Sox1.mouse_HMG_2	13	1	-	6.626159639812935	3.499807183841881	AGGAATGACATTCTA
chr10	126153862	126153863	chr10:126153863:C:T	rs4272714	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr10	126157205	126157206	chr10:126157206:G:A	rs10901541	G	A	g	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	126244195	126244196	chr10:126244196:C:A	rs4962322	C	A	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr10	126332366	126332367	chr10:126332367:C:T	rs10901595	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr10	126543262	126543263	chr10:126543263:C:T	rs1370100	C	T	T	Sox1.mouse_HMG_2	14	1	-	2.8902145645307464	2.7255733166357987	ATGACTGACAGGCAG
chr10	126733581	126733582	chr10:126733582:A:C	rs11245119	A	C	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	126859741	126859742	chr10:126859742:G:T	rs6650151	G	T	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	126871635	126871636	chr10:126871636:C:T	rs182143970	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	126915173	126915174	chr10:126915174:T:A	rs10751589	T	A	T	Sox1.mouse_HMG_2	7	1	-	6.637580331857557	5.7799511574823805	CAGACTAACATTCTT
chr10	126927291	126927292	chr10:126927292:G:A	rs61875487	G	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr10	126979257	126979258	chr10:126979258:C:T	rs71490797	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr10	127250481	127250482	chr10:127250482:A:G	rs11016936	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr10	127283473	127283474	chr10:127283474:A:G	rs4603213	A	G	A	Sox1.mouse_HMG_2	9	1	+	9.777113252037745	2.868358472722526	ATGCATTACATTCAT
chr10	127344906	127344907	chr10:127344907:T:C	rs943206	T	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	127393765	127393766	chr10:127393766:C:T	rs61176465	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr10	127418393	127418394	chr10:127418394:T:C	rs2229600	T	C	C	Sox1.mouse_HMG_2	3	1	-	5.255172188238823	-1.653582591076397	CTCAATGGCATTCTC
chr10	127883011	127883012	chr10:127883012:A:C	rs12259559	A	C	A	Sox1.mouse_HMG_2	0	1	-	3.910616927167894	3.841200094020483	TTGACTCACAGTCTT
chr10	127937394	127937395	chr10:127937395:C:T	rs4750925	C	T	T	Sox1.mouse_HMG_2	0	1	-	3.044388564922976	4.048624797558179	GTCAATTCCACTCAT
chr10	127991519	127991520	chr10:127991520:C:T	rs4531377	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr10	128087117	128087118	chr10:128087118:A:G	rs77099067	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr10	128212259	128212260	chr10:128212260:A:G	rs115729414	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	128306602	128306603	chr10:128306603:C:T	rs7914524	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.133028004113997	-1.5123745289022201	GCGGATGCCATTCAT
chr10	128323502	128323503	chr10:128323503:A:C	rs61873914	A	C	A	Sox1.mouse_HMG_2	13	1	+	7.689301418083151	1.3685854089538032	CTAACTGGCATTCAT
chr10	128386168	128386169	chr10:128386169:G:T	rs76411832	G	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr10	128438387	128438388	chr10:128438388:T:C	rs11016242	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr10	128453258	128453259	chr10:128453259:T:C	rs7475176	T	C	C	Sox1.mouse_HMG_2	10	1	+	2.3953384323730744	-4.452603145907206	CTGAGTTGCATTCGG
chr10	128453281	128453282	chr10:128453282:T:G	rs12762664	T	G	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr10	128533800	128533801	chr10:128533801:T:C	rs7094640	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr10	128633052	128633053	chr10:128633053:G:A	rs11016397	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr10	128949966	128949967	chr10:128949967:C:T	rs7093698	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr10	128954627	128954628	chr10:128954628:C:T	rs7907483	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr10	129233508	129233509	chr10:129233509:T:C	rs114298592	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr10	129417943	129417944	chr10:129417944:G:C	rs1711641	G	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	129417954	129417955	chr10:129417955:A:G	rs11816706	A	G	A	Sox1.mouse_HMG_2	14	1	-	3.6669213852605513	2.7923090425378154	GTGAATAACAGACTT
chr10	129451805	129451806	chr10:129451806:G:C	rs11016797	G	C	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr10	129569604	129569605	chr10:129569605:A:T	rs375246216	A	T	a	Sox1.mouse_HMG_2	4	1	+	4.712307713801238	-2.1091050553588357	CAGAATCCCAGTCAT
chr10	129655351	129655352	chr10:129655352:T:C	rs10829613	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr10	129730785	129730786	chr10:129730786:T:C	rs79073523	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	129893241	129893242	chr10:129893242:A:G	rs189655495	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr10	130112036	130112037	chr10:130112037:T:G	rs2477532	T	G	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr10	130169375	130169376	chr10:130169376:G:A	rs16910163	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr10	130336095	130336096	chr10:130336096:T:C	rs34461220	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr10	130337440	130337441	chr10:130337441:G:C	rs900909	G	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr10	130408306	130408307	chr10:130408307:C:T	rs7922386	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	130574940	130574941	chr10:130574941:T:C	rs11597303	T	C	t	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr10	130604923	130604924	chr10:130604924:C:A	rs67740360	C	A	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr10	130750519	130750520	chr10:130750520:C:G	rs10829786	C	G	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr10	130807517	130807518	chr10:130807518:G:A	rs60033165	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr10	130807525	130807526	chr10:130807526:G:A	rs1703661	G	A	A	Sox1.mouse_HMG_2	8	1	-	7.865521171054043	2.2210944806720567	ATGAATAACAGGCAT
chr10	130820528	130820529	chr10:130820529:A:G	rs7908186	A	G	a	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr10	130874331	130874332	chr10:130874332:T:C	rs10829828	T	C	C	Sox1.mouse_HMG_2	13	1	+	7.039130860645288	3.9127784046742327	ATTAATACCATTCTT
chr10	130934062	130934063	chr10:130934063:A:G	rs1703726	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr10	130934074	130934075	chr10:130934075:A:G	rs1876733	A	G	G	Sox1.mouse_HMG_2	13	1	-	3.1628454903959904	0.03649303442493604	GTGACAAACATTCTC
chr10	131013582	131013583	chr10:131013583:A:G	rs7896816	A	G	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr10	131017561	131017562	chr10:131017562:G:A	rs7072306	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr10	131017579	131017580	chr10:131017580:C:T	rs7073330	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr10	131105229	131105230	chr10:131105230:A:C	rs7911075	A	C	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr10	131122980	131122981	chr10:131122981:G:C	rs12415526	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr10	131144361	131144362	chr10:131144362:G:A	rs12571702	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr10	131144368	131144369	chr10:131144369:G:A	chr10:131144369:G:A	G	A	G	Sox1.mouse_HMG_2	14	1	-	7.930368028301497	8.804980371024232	GTGACTGGCATTCTC
chr10	131144537	131144538	chr10:131144538:G:A	rs548319403	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr10	131252567	131252568	chr10:131252568:T:C	rs2918087	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr10	131281739	131281740	chr10:131281740:C:T	rs75632209	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	131405857	131405858	chr10:131405858:C:T	rs4601678	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.2215288635608106	-1.4238736694554062	ACGAATAACAGGCAT
chr10	131450417	131450418	chr10:131450418:G:A	rs79356415	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr10	131532952	131532953	chr10:131532953:T:C	rs4329594	T	C	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr10	131650268	131650269	chr10:131650269:A:G	rs7096432	A	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	131667648	131667649	chr10:131667649:T:G	rs11591322	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	131685036	131685037	chr10:131685037:G:A	rs9419618	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr10	131702485	131702486	chr10:131702486:G:A	rs9419624	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr10	131767365	131767366	chr10:131767366:C:T	rs4611133	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr10	131893241	131893242	chr10:131893242:G:C	rs36201999	G	C	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr10	132063514	132063515	chr10:132063515:C:T	rs576071685	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr10	132098964	132098965	chr10:132098965:A:C	rs11146168	A	C	c	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr10	132164575	132164576	chr10:132164576:G:A	rs77822814	G	A	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr10	132296123	132296124	chr10:132296124:C:T	rs57802667	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr10	132467483	132467484	chr10:132467484:G:A	rs116494749	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr10	132582826	132582827	chr10:132582827:A:C	rs2492768	A	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr10	132587055	132587056	chr10:132587056:C:T	rs2786889	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr10	132878605	132878606	chr10:132878606:A:G	rs4880459	A	G	G	Sox1.mouse_HMG_2	9	1	+	3.8251281587118244	-3.0836266206033964	GAGAATAACATTGAG
chr11	190789	190790	chr11:190790:C:T	rs71277343	C	T	.	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	243852	243853	chr11:243853:G:A	rs6598061	G	A	A	Sox1.mouse_HMG_2	4	1	-	5.8636240834222395	1.424272382129089	CTTACTTACATTCAC
chr11	293187	293188	chr11:293188:T:C	rs12801980	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.511715551985247	-2.336226026295033	ACGAGTACCATTCAG
chr11	1005159	1005160	chr11:1005160:C:T	rs7395515	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr11	1342359	1342360	chr11:1342360:C:G	rs186082394	C	G	c	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr11	1374090	1374091	chr11:1374091:G:A	rs11024281	G	A	g	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr11	1682241	1682242	chr11:1682242:G:A	rs573658026	G	A	-	Sox1.mouse_HMG_2	1	1	+	2.685989229897599	2.9904604089761744	CGGTATGACATTCAC
chr11	1703200	1703201	chr11:1703201:G:A	rs76082460	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr11	1768617	1768618	chr11:1768618:G:A	rs190837929	G	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	2150443	2150444	chr11:2150444:G:A	chr11:2150444:G:A	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	2202428	2202429	chr11:2202429:C:A	rs35840390	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	2249010	2249011	chr11:2249011:G:T	rs6578252	G	T	G	Sox1.mouse_HMG_2	10	1	+	2.4685265793890068	5.221124095114104	GTGGCTATCAGTCAG
chr11	2293031	2293032	chr11:2293032:T:A	rs2651834	T	A	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr11	2294164	2294165	chr11:2294165:G:T	rs748760753	G	T	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr11	2816510	2816511	chr11:2816511:G:C	rs12285496	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	2934698	2934699	chr11:2934699:C:T	rs11024646	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	2949624	2949625	chr11:2949625:A:G	rs2073843	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	3237574	3237575	chr11:3237575:T:C	rs4542391	T	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr11	3379430	3379431	chr11:3379431:T:C	rs6578344	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr11	3379461	3379462	chr11:3379462:C:T	rs6578345	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr11	3415504	3415505	chr11:3415505:C:T	rs11027069	C	T	c	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr11	3489518	3489519	chr11:3489519:G:T	rs56413512	G	T	-	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr11	3512165	3512166	chr11:3512166:A:G	rs4980411	A	G	-	Sox1.mouse_HMG_2	14	1	-	5.380711760174181	4.506099417451445	CAGACTTTCAGTCAT
chr11	3512184	3512185	chr11:3512185:C:T	rs4980412	C	T	-	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	3626297	3626298	chr11:3626298:A:C	rs17173897	A	C	N	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	3626299	3626300	chr11:3626300:C:G	rs17173896	C	G	c	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	3736997	3736998	chr11:3736998:A:G	rs276909	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	3840131	3840132	chr11:3840132:T:C	rs113601847	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr11	3960257	3960258	chr11:3960258:A:G	rs10835390	A	G	a	Sox1.mouse_HMG_2	1	1	-	4.246896973994316	-0.39709533349891835	ATGCATTTCATTTAT
chr11	4026624	4026625	chr11:4026625:C:G	rs4910875	C	G	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	4508937	4508938	chr11:4508938:A:G	rs2435539	A	G	N	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr11	4508966	4508967	chr11:4508967:A:G	rs2898960	A	G	N	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	4509542	4509543	chr11:4509543:G:A	rs117101899	G	A	g	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	4645983	4645984	chr11:4645984:T:C	rs7102992	T	C	T	Sox1.mouse_HMG_2	0	1	-	5.741471299855009	4.737235067219807	ATGACTTCCACTCAA
chr11	4661883	4661884	chr11:4661884:C:T	rs11033236	C	T	T	Sox1.mouse_HMG_2	2	1	-	3.808239172694347	-0.8371633603218683	ATGAATGTCTTTCTA
chr11	5036825	5036826	chr11:5036826:C:T	rs2445267	C	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr11	5038783	5038784	chr11:5038784:T:C	rs2499977	T	C	.	Sox1.mouse_HMG_2	11	1	+	5.9455315831108875	-0.9632231962043333	ATGTATAACATTTAT
chr11	5038785	5038786	chr11:5038786:A:C	rs2499978	A	C	.	Sox1.mouse_HMG_2	13	1	+	5.9455315831108875	-0.3751844260184599	ATGTATAACATTTAT
chr11	5223173	5223174	chr11:5223174:A:G	rs10837628	A	G	A	Sox1.mouse_HMG_2	13	1	-	7.211637951672576	4.085285495701521	TAGAATTGCATTCTT
chr11	5468924	5468925	chr11:5468925:C:G	rs7925620	C	G	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	5468951	5468952	chr11:5468952:C:T	rs17297010	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.1156661301163227	-2.5287605602656638	GGGAATACCATGCAG
chr11	5677724	5677725	chr11:5677725:A:G	rs10769173	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	5695075	5695076	chr11:5695076:A:C	rs12289981	A	C	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr11	6061672	6061673	chr11:6061673:G:C	rs10839332	G	C	G	Sox1.mouse_HMG_2	7	1	-	3.2162329360099733	2.911862837136967	GTGACTACCAGTGAC
chr11	6315043	6315044	chr11:6315044:T:C	rs2634183	T	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr11	6613427	6613428	chr11:6613428:C:G	rs1045450	C	G	-	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	6670530	6670531	chr11:6670531:T:C	rs11603631	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.828448602157878	-3.0803061771573415	CTGAAGACAATTCAC
chr11	6708564	6708565	chr11:6708565:T:C	rs138496788	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	6735417	6735418	chr11:6735418:G:A	rs11040994	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr11	6869669	6869670	chr11:6869670:A:G	rs4758140	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	7060902	7060903	chr11:7060903:C:T	rs35898585	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr11	7168600	7168601	chr11:7168601:A:G	rs11041227	A	G	A	Sox1.mouse_HMG_2	5	1	+	8.509065059192144	8.509065059192144	CTGAAAGACATTCAT
chr11	7382660	7382661	chr11:7382661:T:A	rs7951496	T	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr11	7384720	7384721	chr11:7384721:G:C	rs77141076	G	C	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr11	7422614	7422615	chr11:7422615:G:T	rs12799687	G	T	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr11	7447820	7447821	chr11:7447821:G:A	rs7110975	G	A	g	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	7451220	7451221	chr11:7451221:C:G	rs7102418	C	G	G	Sox1.mouse_HMG_2	14	1	+	3.4302034479560617	3.1517476738910593	CTGAATAATATGCAC
chr11	7598882	7598883	chr11:7598883:C:T	rs80154318	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr11	7630194	7630195	chr11:7630195:C:T	rs560871977	C	T	C	Sox1.mouse_HMG_2	2	1	-	7.773903942002922	3.128501408986704	CTGAATATCCTTCAA
chr11	7692045	7692046	chr11:7692046:T:A	rs113523529	T	A	T	Sox1.mouse_HMG_2	1	1	+	5.905698804069066	1.2617064965758316	CTGACTTTGATTCAG
chr11	7851818	7851819	chr11:7851819:T:C	rs10839886	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.7363382184079605	-3.0850745507521107	TTGAAAAACAGTCTT
chr11	8096555	8096556	chr11:8096556:A:G	rs2242501	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr11	8248696	8248697	chr11:8248697:T:C	rs3794012	T	C	t	Sox1.mouse_HMG_2	4	1	-	3.1640179321578352	-3.657394837002237	CCGAATGGCTTTCAT
chr11	8300174	8300175	chr11:8300175:T:C	rs11041854	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr11	8326006	8326007	chr11:8326007:C:T	rs147887723	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr11	8365594	8365595	chr11:8365595:T:C	rs60682123	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.0057523806580315	-1.8156603885020401	AGGAATAGGATTCAG
chr11	8680288	8680289	chr11:8680289:C:T	rs10840106	C	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr11	8701368	8701369	chr11:8701369:A:G	rs6483741	A	G	G	Sox1.mouse_HMG_2	14	1	-	3.371848603963517	2.497236261240781	AGGCATGTCATTCAT
chr11	8774239	8774240	chr11:8774240:C:T	rs151226956	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	9703289	9703290	chr11:9703290:C:T	rs2572940	C	T	C	Sox1.mouse_HMG_2	13	1	+	9.384213134458921	12.510565590429975	CTGAATAACATTCCG
chr11	9759953	9759954	chr11:9759954:T:A	rs552063199	T	A	T	Sox1.mouse_HMG_2	9	1	-	2.791387700471055	-4.117367078844166	ATGACTCACACTCAG
chr11	10255957	10255958	chr11:10255958:T:C	rs16907612	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	10255978	10255979	chr11:10255979:A:C	rs187033868	A	C	A	Sox1.mouse_HMG_2	13	1	+	2.9499684559066957	-3.3707475532226514	GTCAACACCATTCAC
chr11	10406517	10406518	chr11:10406518:A:G	rs190930014	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	10439849	10439850	chr11:10439850:G:A	rs73407718	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr11	10511605	10511606	chr11:10511606:G:C	rs11042866	G	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr11	10686719	10686720	chr11:10686720:A:G	rs716381	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr11	10892350	10892351	chr11:10892351:T:C	rs7105644	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	11232220	11232221	chr11:11232221:T:A	rs7118478	T	A	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	11258276	11258277	chr11:11258277:A:G	rs12802801	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr11	11613057	11613058	chr11:11613058:C:G	rs73413685	C	G	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr11	11623052	11623053	chr11:11623053:G:A	rs10765875	G	A	A	Sox1.mouse_HMG_2	8	1	-	3.2788969280101297	-2.3655297623718563	AGGAATTCCGTTCAG
chr11	11750431	11750432	chr11:11750432:A:T	rs10500748	A	T	T	Sox1.mouse_HMG_2	4	1	+	4.91509864537827	-1.9063141237818013	GTAAATAATATTCAA
chr11	11758688	11758689	chr11:11758689:T:C	rs10831669	T	C	C	Sox1.mouse_HMG_2	5	1	+	3.9178810035188976	-2.9908737757963237	ATGAATTCCAGTTGT
chr11	11809313	11809314	chr11:11809314:C:G	rs897364	C	G	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	11825198	11825199	chr11:11825199:G:C	rs72854898	G	C	G	Sox1.mouse_HMG_2	0	1	+	10.421105630099614	10.756465657016456	GGGAATAACATTCAG
chr11	11845460	11845461	chr11:11845461:G:T	rs116900319	G	T	G	Sox1.mouse_HMG_2	7	1	+	7.027858344469379	6.871283989635279	AGGAATAGAATTCAT
chr11	11858670	11858671	chr11:11858671:G:A	rs4259823	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr11	11913582	11913583	chr11:11913583:G:A	rs78450015	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	11989961	11989962	chr11:11989962:T:C	rs4910430	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	12030202	12030203	chr11:12030203:T:C	rs79681203	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.27134101335106	-3.6374137659641588	ACCACTGCCATTCAT
chr11	12044286	12044287	chr11:12044287:C:A	rs150252599	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr11	12123336	12123337	chr11:12123337:T:C	rs922829035	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr11	12147753	12147754	chr11:12147754:G:A	rs4644628	G	A	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr11	12174559	12174560	chr11:12174560:C:T	rs55953671	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr11	12217501	12217502	chr11:12217502:G:A	rs114617392	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	12238807	12238808	chr11:12238808:C:T	rs11022262	C	T	C	Sox1.mouse_HMG_2	2	1	-	1.769190638354757	-2.876211894661459	CTGCATACCCTTCAC
chr11	12238810	12238811	chr11:12238811:G:A	rs57315506	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr11	12272306	12272307	chr11:12272307:C:G	rs12577275	C	G	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	12283503	12283504	chr11:12283504:A:G	rs10741577	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr11	12420875	12420876	chr11:12420876:A:T	rs761791668	A	T	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	12452276	12452277	chr11:12452277:C:T	rs61875561	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr11	12556952	12556953	chr11:12556953:C:T	rs145583137	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	12569991	12569992	chr11:12569992:A:G	rs145662300	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr11	12620077	12620078	chr11:12620078:T:C	rs7128918	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	12849449	12849450	chr11:12849450:A:C	rs74824367	A	C	A	Sox1.mouse_HMG_2	13	1	-	4.711459322696006	2.9597051880816503	AGGAATAACATTTTT
chr11	12899141	12899142	chr11:12899142:A:G	rs114577820	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	12950816	12950817	chr11:12950817:C:G	rs116460963	C	G	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	13104355	13104356	chr11:13104356:G:A	rs7934918	G	A	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr11	13176534	13176535	chr11:13176535:G:A	rs71481082	G	A	g	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	13183268	13183269	chr11:13183269:G:A	rs556662771	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr11	13183286	13183287	chr11:13183287:G:A	rs6486101	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	13229744	13229745	chr11:13229745:T:A	rs77027554	T	A	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr11	13463548	13463549	chr11:13463549:G:A	rs147023900	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	13996213	13996214	chr11:13996214:C:T	rs12282380	C	T	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	14107220	14107221	chr11:14107221:T:C	rs72858657	T	C	T	Sox1.mouse_HMG_2	1	1	+	2.7805892614353502	-1.8634030460578828	GTGGCTTTCAGTCAT
chr11	14223578	14223579	chr11:14223579:T:C	rs11023149	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	14399554	14399555	chr11:14399555:A:G	rs9667144	A	G	A	Sox1.mouse_HMG_2	1	1	-	8.789484859959812	4.145492552466575	ATGAATTGCATTCCC
chr11	14452068	14452069	chr11:14452069:C:G	rs16930182	C	G	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	14835505	14835506	chr11:14835506:G:A	rs11023348	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	14891067	14891068	chr11:14891068:A:G	rs559498193	A	G	A	Sox1.mouse_HMG_2	14	1	-	4.2305199499166415	3.355907607193905	TTGAATTACACTTAT
chr11	14891095	14891096	chr11:14891096:A:G	rs148659424	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	14932556	14932557	chr11:14932557:T:C	rs10832318	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	15875868	15875869	chr11:15875869:C:T	rs11023756	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr11	15893288	15893289	chr11:15893289:A:C	rs76001600	A	C	A	Sox1.mouse_HMG_2	1	1	-	4.5822041927590735	-0.3662592938127352	TTGATTTACATTCTG
chr11	16018926	16018927	chr11:16018927:G:T	rs16932458	G	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr11	16174394	16174395	chr11:16174395:G:T	rs11023860	G	T	T	Sox1.mouse_HMG_2	8	1	-	4.435649942651135	-0.41384687286096467	CTGAATTACTTTTAT
chr11	16194926	16194927	chr11:16194927:C:T	rs7931734	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	16240555	16240556	chr11:16240556:T:C	rs75173225	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	16378937	16378938	chr11:16378938:A:T	rs66906527	A	T	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	16378988	16378989	chr11:16378989:A:C	rs57463944	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr11	16632385	16632386	chr11:16632386:T:C	rs560309121	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	16632423	16632424	chr11:16632424:T:C	rs72632980	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	16822202	16822203	chr11:16822203:A:G	rs61274404	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.464403448237774	-1.3570093209222966	CTGCATATCAGTCAC
chr11	16859797	16859798	chr11:16859798:G:A	rs116918558	G	A	G	Sox1.mouse_HMG_2	7	1	-	6.794670973841388	6.333726520134281	CTGAATGCCTTTCAA
chr11	16903498	16903499	chr11:16903499:C:T	rs177544	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	16982602	16982603	chr11:16982603:T:C	rs4757470	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	16995532	16995533	chr11:16995533:T:C	rs10832712	T	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr11	17073071	17073072	chr11:17073072:G:A	rs61879689	G	A	g	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr11	17750922	17750923	chr11:17750923:A:T	rs10766427	A	T	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	17751778	17751779	chr11:17751779:A:G	rs7941164	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	17891622	17891623	chr11:17891623:C:T	rs61882440	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	18171632	18171633	chr11:18171633:C:T	rs74613122	C	T	c	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr11	18255267	18255268	chr11:18255268:G:A	rs12419567	G	A	g	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	18394139	18394140	chr11:18394140:G:A	rs2403278	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.629337166858309	-1.0432499368099457	ATGCCTAGCAGTCAG
chr11	18529964	18529965	chr11:18529965:G:A	rs78805444	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	18618750	18618751	chr11:18618751:T:C	rs79804264	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr11	18681076	18681077	chr11:18681077:T:C	rs11606447	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	18933013	18933014	chr11:18933014:G:A	rs3923247	G	A	-	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	19382602	19382603	chr11:19382603:G:A	rs56190229	G	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr11	19438038	19438039	chr11:19438039:T:C	chr11:19438039:T:C	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	19578057	19578058	chr11:19578058:G:A	rs7949494	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.710593080593678	3.2496486268865716	AGGAATACGAGTCAT
chr11	19680154	19680155	chr11:19680155:A:G	rs7927786	A	G	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr11	19801231	19801232	chr11:19801232:C:T	rs117724950	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr11	19801274	19801275	chr11:19801275:G:C	rs117148909	G	C	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	19827760	19827761	chr11:19827761:T:A	rs796122089	T	A	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr11	19827775	19827776	chr11:19827776:T:G	rs796674885	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.438758178784362	-0.5097053077874477	CTGAATGACAGCCAA
chr11	19828375	19828376	chr11:19828376:C:A	rs1169861556	C	A	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	19828508	19828509	chr11:19828509:G:A	rs796264665	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	19828511	19828512	chr11:19828512:T:G	rs796461080	T	G	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	19828531	19828532	chr11:19828532:C:T	rs1017433223	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	19993505	19993506	chr11:19993506:T:C	rs4757022	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	20159057	20159058	chr11:20159058:A:G	rs10741822	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.969890146650707	-1.9388646326645143	GCGTATAACATTCAT
chr11	20188849	20188850	chr11:20188850:T:C	rs12272729	T	C	T	Sox1.mouse_HMG_2	3	1	-	5.57554029177925	-1.333214487535969	GTCACTGTCATTCAC
chr11	20204390	20204391	chr11:20204391:T:G	rs4757904	T	G	T	Sox1.mouse_HMG_2	7	1	-	4.892854560864672	4.496169840196602	CTGAATAATATTCCT
chr11	20418381	20418382	chr11:20418382:T:C	rs6483679	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	20723526	20723527	chr11:20723527:G:T	rs11025709	G	T	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	20730154	20730155	chr11:20730155:T:G	rs1792978	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	20939458	20939459	chr11:20939459:G:C	rs4923185	G	C	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	21038063	21038064	chr11:21038064:T:G	rs10833433	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	21427859	21427860	chr11:21427860:A:G	rs73459541	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	21613679	21613680	chr11:21613680:A:G	rs4384382	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	21631862	21631863	chr11:21631863:A:G	rs187408661	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr11	22672566	22672567	chr11:22672567:A:G	rs1993964	A	G	G	Sox1.mouse_HMG_2	1	1	-	6.912589541831832	2.2685972343386	GTGACTTCCATTTAA
chr11	22681528	22681529	chr11:22681529:C:T	rs12787124	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr11	22709358	22709359	chr11:22709359:G:A	rs400445	G	A	g	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr11	22875881	22875882	chr11:22875882:T:C	rs117098997	T	C	T	Sox1.mouse_HMG_2	5	1	+	7.174344943190871	0.2655901638756505	ATAAATATAATTCAT
chr11	22976386	22976387	chr11:22976387:G:A	chr11:22976387:G:A	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr11	22982927	22982928	chr11:22982928:A:T	rs72872204	A	T	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr11	23077733	23077734	chr11:23077734:T:C	rs11026965	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	23267231	23267232	chr11:23267232:T:C	rs67449872	T	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr11	23479704	23479705	chr11:23479705:A:C	rs7932299	A	C	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	23517288	23517289	chr11:23517289:G:A	rs111318556	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr11	23875182	23875183	chr11:23875183:T:C	rs7934469	T	C	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr11	23928773	23928774	chr11:23928774:T:C	rs1919221	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr11	24513747	24513748	chr11:24513748:A:G	rs7112207	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	24900539	24900540	chr11:24900540:C:A	rs10834539	C	A	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	25318221	25318222	chr11:25318222:C:A	rs11028588	C	A	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr11	25395039	25395040	chr11:25395040:T:C	rs371583616	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	25571699	25571700	chr11:25571700:G:C	rs11028769	G	C	G	Sox1.mouse_HMG_2	2	1	+	2.535955717498861	-2.8566612173475785	CTGTCTGCCATTCTT
chr11	25615165	25615166	chr11:25615166:T:C	rs4562787	T	C	C	Sox1.mouse_HMG_2	11	1	+	5.194385668429228	-1.7143691108859929	CTGACTTCAATTCTT
chr11	25661770	25661771	chr11:25661771:C:T	rs10767424	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	25745944	25745945	chr11:25745945:C:A	rs191259087	C	A	c	Sox1.mouse_HMG_2	0	1	+	4.69012713865864	5.359003344376998	CTAATTAGCATTCAT
chr11	26025904	26025905	chr11:26025905:A:G	rs11029100	A	G	A	Sox1.mouse_HMG_2	13	1	+	10.729378658924634	5.783260971151988	ATGAATAATATTCAG
chr11	26084217	26084218	chr11:26084218:G:A	rs73435435	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	26277004	26277005	chr11:26277005:C:T	rs115016486	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	26277028	26277029	chr11:26277029:G:T	rs2100820	G	T	G	Sox1.mouse_HMG_2	6	1	+	5.39495924374031	5.994131230867555	GTGGCTGCCATTCAT
chr11	26277031	26277032	chr11:26277032:A:G	rs571389344	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.39495924374031	-1.5137955355749106	GTGGCTGCCATTCAT
chr11	26423889	26423890	chr11:26423890:A:G	rs12276198	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr11	26618826	26618827	chr11:26618827:T:C	rs439961	T	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	26701044	26701045	chr11:26701045:T:G	rs4388837	T	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	27009640	27009641	chr11:27009641:G:A	rs55706630	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr11	27196307	27196308	chr11:27196308:C:T	rs12287984	C	T	c	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr11	27294958	27294959	chr11:27294959:T:C	rs182681715	T	C	T	Sox1.mouse_HMG_2	14	1	-	5.598904581766181	5.763545829661129	TTTACTACCATTCAA
chr11	27452337	27452338	chr11:27452338:A:T	rs562869070	A	T	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	27469209	27469210	chr11:27469210:A:G	chr11:27469210:A:G	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	27660367	27660368	chr11:27660368:T:C	rs117314519	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	27726737	27726738	chr11:27726738:G:A	rs11030123	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr11	28108943	28108944	chr11:28108944:G:T	rs112846910	G	T	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	28145085	28145086	chr11:28145086:A:C	rs111847249	A	C	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	28179492	28179493	chr11:28179493:T:A	chr11:28179493:T:A	T	A	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	28566798	28566799	chr11:28566799:T:C	rs74984993	T	C	C	Sox1.mouse_HMG_2	10	1	+	2.8136418300424793	-4.034299748237802	GTGAATAGCTTTCGG
chr11	28833829	28833830	chr11:28833830:A:C	rs148950439	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr11	28842872	28842873	chr11:28842873:A:G	rs1589103	A	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	28961301	28961302	chr11:28961302:C:T	rs11030522	C	T	.	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	29125553	29125554	chr11:29125554:T:C	rs6484426	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr11	29207101	29207102	chr11:29207102:C:T	rs117434351	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	29484735	29484736	chr11:29484736:A:G	rs501827	A	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	30046242	30046243	chr11:30046243:A:G	rs7125619	A	G	A	Sox1.mouse_HMG_2	11	1	-	3.32139910800659	-3.5873556713086305	ATGATTGCCATTTAC
chr11	30206716	30206717	chr11:30206717:C:T	rs653518	C	T	C	Sox1.mouse_HMG_2	14	1	+	4.876076756765409	5.750689099488145	GTGAATTTCAGTCCC
chr11	30360938	30360939	chr11:30360939:C:T	rs60225577	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.6521807819680205	-1.9922459084139654	GAGAAAAACATTCAA
chr11	30523263	30523264	chr11:30523264:G:A	rs12287996	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	30545863	30545864	chr11:30545864:C:T	rs476159	C	T	T	Sox1.mouse_HMG_2	2	1	-	7.007891996678868	2.3624894636626523	ATGTATATCAGTCAT
chr11	30545874	30545875	chr11:30545875:T:A	rs35695296	T	A	a	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr11	30557937	30557938	chr11:30557938:C:T	rs521069	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr11	30639481	30639482	chr11:30639482:C:T	rs808401	C	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	30870695	30870696	chr11:30870696:C:T	rs166652	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr11	31502775	31502776	chr11:31502776:G:A	rs1223116	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr11	31510323	31510324	chr11:31510324:G:A	rs11826035	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	31903400	31903401	chr11:31903401:C:T	rs117706246	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	31915373	31915374	chr11:31915374:T:C	rs687256	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr11	31958060	31958061	chr11:31958061:A:C	rs967798330	A	C	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr11	32029894	32029895	chr11:32029895:G:A	rs80152372	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	32208144	32208145	chr11:32208145:C:T	rs7119819	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.762533606246069	0.08994650257781381	CTGACTAATATTCTC
chr11	32213079	32213080	chr11:32213080:A:G	rs56116534	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	32447638	32447639	chr11:32447639:G:A	rs61889251	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	32479569	32479570	chr11:32479570:C:T	rs76658564	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	32479574	32479575	chr11:32479575:G:T	rs112130953	G	T	G	Sox1.mouse_HMG_2	4	1	+	9.26528327506565	9.26528327506565	ATGAGTGACATTCAT
chr11	32658233	32658234	chr11:32658234:G:A	rs77005905	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.267425101586648	5.27166133422185	GTAAATAGCTTTCAT
chr11	33067018	33067019	chr11:33067019:G:A	rs12276196	G	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	33215043	33215044	chr11:33215044:A:T	rs7104455	A	T	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr11	33445812	33445813	chr11:33445813:T:C	rs79459713	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.609518697298903	-0.03447361019433093	ATGAATGTCAGTTTT
chr11	33448926	33448927	chr11:33448927:A:G	rs16924336	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	33559163	33559164	chr11:33559164:T:C	rs10836072	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr11	33559166	33559167	chr11:33559167:C:T	rs12223694	C	T	c	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr11	33707103	33707104	chr11:33707104:G:A	rs1040263832	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr11	33842714	33842715	chr11:33842715:G:A	rs7938708	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.818399273434054	-0.8260274169479324	TTGAATTCCAGACAC
chr11	33867107	33867108	chr11:33867108:G:C	rs11032430	G	C	G	Sox1.mouse_HMG_2	7	1	-	4.539943499369052	4.235573400496046	TTGAATTCCAGGCAG
chr11	34194815	34194816	chr11:34194816:T:G	rs2957495	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	34205309	34205310	chr11:34205310:C:T	rs2955945	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr11	34231873	34231874	chr11:34231874:A:G	rs4756118	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	34290982	34290983	chr11:34290983:C:G	rs2755152	C	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	34292145	34292146	chr11:34292146:C:T	rs2755149	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	34396411	34396412	chr11:34396412:A:G	rs149407724	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	34458712	34458713	chr11:34458713:C:T	rs767834653	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.685617695615767	-0.9597848374004484	GTGACTTGGATTCTT
chr11	34864102	34864103	chr11:34864103:C:T	rs2941055	C	T	T	Sox1.mouse_HMG_2	10	1	-	3.884982816132459	-0.21036124642272458	CAGACTAACAGTCTT
chr11	34894208	34894209	chr11:34894209:A:G	rs2986425	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	34962114	34962115	chr11:34962115:A:G	rs7929287	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	35134952	35134953	chr11:35134953:T:G	rs353560	T	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	35150574	35150575	chr11:35150575:G:A	rs353623	G	A	G	Sox1.mouse_HMG_2	1	1	-	3.3808808406295308	8.024873148122765	ACGAAGGACATTCAG
chr11	35180589	35180590	chr11:35180590:A:G	rs61881656	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr11	35236040	35236041	chr11:35236041:T:A	rs7105545	T	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	35290164	35290165	chr11:35290165:T:C	rs61882291	T	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	35290177	35290178	chr11:35290178:T:C	rs61882292	T	C	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr11	35319538	35319539	chr11:35319539:G:A	rs10836372	G	A	G	Sox1.mouse_HMG_2	11	1	-	2.4386729883430016	9.347427767658223	TTGAATACCAACCAT
chr11	35323246	35323247	chr11:35323247:A:C	rs117135679	A	C	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr11	35405834	35405835	chr11:35405835:A:G	rs7938735	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr11	35491312	35491313	chr11:35491313:G:T	rs115860994	G	T	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	35511898	35511899	chr11:35511899:T:G	rs77881611	T	G	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	35710672	35710673	chr11:35710673:T:C	chr11:35710673:T:C	T	C	T	Sox1.mouse_HMG_2	9	1	-	6.184568321814959	-0.7241864575002607	ATGACTTCCAATCAC
chr11	35710680	35710681	chr11:35710681:A:G	chr11:35710681:A:G	A	G	A	Sox1.mouse_HMG_2	1	1	-	6.184568321814959	1.5405760143217258	ATGACTTCCAATCAC
chr11	35750697	35750698	chr11:35750698:G:A	rs61881279	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	35815338	35815339	chr11:35815339:G:A	rs12222807	G	A	.	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	35933348	35933349	chr11:35933349:C:T	rs138414812	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	35980757	35980758	chr11:35980758:T:G	rs11033358	T	G	G	Sox1.mouse_HMG_2	4	1	-	8.250607871944213	5.868546804077291	CTGTATTTCATTCAT
chr11	36021797	36021798	chr11:36021798:A:G	rs262429	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	36156890	36156891	chr11:36156891:A:G	rs115931135	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.917031621685644	-1.9309099565946373	GTGACTGACATACAC
chr11	36195682	36195683	chr11:36195683:C:T	rs16928509	C	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	36195851	36195852	chr11:36195852:T:G	rs115496672	T	G	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	36260497	36260498	chr11:36260498:T:G	rs111773434	T	G	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr11	36264444	36264445	chr11:36264445:C:A	rs7951298	C	A	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr11	36455411	36455412	chr11:36455412:A:G	rs16928896	A	G	A	Sox1.mouse_HMG_2	10	1	-	6.676143822483498	-0.1717977557967839	TTCACTGGCATTCAT
chr11	36493514	36493515	chr11:36493515:A:G	rs529505854	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.490524349697615	4.615912006974878	TTGAAAGACAGTCAT
chr11	36512202	36512203	chr11:36512203:G:A	rs5030411	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	36703074	36703075	chr11:36703075:C:T	rs75939870	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	36775318	36775319	chr11:36775319:G:C	rs78893214	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	36949723	36949724	chr11:36949724:T:C	rs1480551	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	37109160	37109161	chr11:37109161:G:A	rs16930091	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	37220330	37220331	chr11:37220331:G:A	rs12276774	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	37643016	37643017	chr11:37643017:G:C	rs16930494	G	C	G	Sox1.mouse_HMG_2	2	1	+	3.6372330082287494	-1.755383926617689	TTGCATTTCATTCTG
chr11	37648009	37648010	chr11:37648010:C:T	rs73460551	C	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	38461620	38461621	chr11:38461621:A:G	rs11603512	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	38492133	38492134	chr11:38492134:T:A	rs4290206	T	A	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	38937724	38937725	chr11:38937725:A:G	rs6485041	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	39171738	39171739	chr11:39171739:C:T	rs17712923	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr11	39368649	39368650	chr11:39368650:A:T	rs6485085	A	T	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	39561529	39561530	chr11:39561530:G:A	rs7124963	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr11	39917259	39917260	chr11:39917260:T:C	rs7938370	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	40265722	40265723	chr11:40265723:C:T	rs72891085	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	40289238	40289239	chr11:40289239:A:C	rs998447	A	C	c	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr11	40356067	40356068	chr11:40356068:T:C	rs34034994	T	C	T	Sox1.mouse_HMG_2	7	1	-	4.9018460719419465	4.200791252400871	ATAAATCACAGTCAC
chr11	41003396	41003397	chr11:41003397:T:C	rs61887626	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	41522824	41522825	chr11:41522825:T:G	rs1457331	T	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	41667232	41667233	chr11:41667233:A:G	rs76013903	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	42175330	42175331	chr11:42175331:C:T	rs4755594	C	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	42621044	42621045	chr11:42621045:C:T	rs4306288	C	T	t	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	42621063	42621064	chr11:42621064:T:C	rs187721954	T	C	t	Sox1.mouse_HMG_2	9	1	-	4.998352313844917	-1.910402465470304	TGGAATGTCATTCTG
chr11	42625589	42625590	chr11:42625590:G:A	rs4359194	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr11	42625604	42625605	chr11:42625605:T:C	rs4584565	T	C	T	Sox1.mouse_HMG_2	1	1	+	7.507960748233487	2.863968440740255	TTGAAAATCATTCAA
chr11	43206959	43206960	chr11:43206960:C:T	rs569065337	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr11	43381965	43381966	chr11:43381966:T:C	rs11037426	T	C	C	Sox1.mouse_HMG_2	5	1	-	2.7997676777092617	2.7997676777092617	GTGACATCCATTCTT
chr11	43492730	43492731	chr11:43492731:G:A	rs138955634	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	43626817	43626818	chr11:43626818:T:G	rs4237643	T	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr11	43747736	43747737	chr11:43747737:A:C	rs7115856	A	C	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	43747744	43747745	chr11:43747745:C:T	rs7115970	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	44001060	44001061	chr11:44001061:G:A	rs7937428	G	A	A	Sox1.mouse_HMG_2	8	1	-	3.7784832373477157	-1.8659434530342707	ATGAATAACAATAAT
chr11	44065632	44065633	chr11:44065633:C:A	rs178510	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr11	44065633	44065634	chr11:44065634:C:T	rs75372436	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	44101441	44101442	chr11:44101442:A:G	rs11606372	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr11	44308233	44308234	chr11:44308234:T:C	rs59274618	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	44409524	44409525	chr11:44409525:C:A	rs2085035	C	A	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	44409565	44409566	chr11:44409566:C:G	rs2085036	C	G	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	44464944	44464945	chr11:44464945:C:T	rs767220171	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr11	44564983	44564984	chr11:44564984:G:A	rs978812942	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	44590956	44590957	chr11:44590957:C:T	rs934176	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	44590983	44590984	chr11:44590984:C:T	rs11038075	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	44708203	44708204	chr11:44708204:G:A	rs4237647	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	44842938	44842939	chr11:44842939:C:T	rs835785	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	44845006	44845007	chr11:44845007:C:T	rs12419327	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	44852096	44852097	chr11:44852097:C:T	rs835805	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	44978053	44978054	chr11:44978054:G:A	rs2279359	G	A	G	Sox1.mouse_HMG_2	1	1	+	2.6100207222917717	2.9144919013703463	CGGAATTCCCTTCAG
chr11	45229796	45229797	chr11:45229797:G:A	rs61880323	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	45322908	45322909	chr11:45322909:C:G	rs10742748	C	G	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr11	45412611	45412612	chr11:45412612:C:T	rs60977164	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	45449949	45449950	chr11:45449950:G:A	rs10769148	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	45449969	45449970	chr11:45449970:T:C	rs10769149	T	C	T	Sox1.mouse_HMG_2	10	1	+	5.42726909825127	-1.420672480029011	CGAAATGCCATTCAT
chr11	45741444	45741445	chr11:45741445:T:G	rs2593753	T	G	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	45777414	45777415	chr11:45777415:T:A	rs11038652	T	A	T	Sox1.mouse_HMG_2	10	1	+	7.0975397551564745	0.24959817687619296	CTGAATTTCTTTCAG
chr11	45777417	45777418	chr11:45777418:A:C	rs11038653	A	C	A	Sox1.mouse_HMG_2	13	1	+	7.0975397551564745	0.7768237460271274	CTGAATTTCTTTCAG
chr11	46149852	46149853	chr11:46149853:G:A	rs3935366	G	A	G	Sox1.mouse_HMG_2	8	1	-	6.964760555521414	1.3203338651394279	ATGACTACCTTTCAC
chr11	46191859	46191860	chr11:46191860:G:A	rs12808446	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	46729850	46729851	chr11:46729851:T:C	rs2282687	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	46765855	46765856	chr11:46765856:C:G	rs4453193	C	G	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	47130846	47130847	chr11:47130847:C:G	rs968390243	C	G	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	47158309	47158310	chr11:47158310:C:A	rs2291443	C	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	47303114	47303115	chr11:47303115:T:A	rs4752824	T	A	A	Sox1.mouse_HMG_2	10	1	+	3.85691736117701	-2.9910242171032704	TTGACTGAGATTCTT
chr11	47371751	47371752	chr11:47371752:A:T	rs11039212	A	T	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	47507164	47507165	chr11:47507165:G:A	rs117127556	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	47513582	47513583	chr11:47513583:C:G	rs537638526	C	G	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	47540284	47540285	chr11:47540285:T:G	rs7940413	T	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	47540312	47540313	chr11:47540313:C:T	rs147142722	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	47540562	47540563	chr11:47540563:C:T	rs188473159	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	47619209	47619210	chr11:47619210:T:C	rs79754936	T	C	T	Sox1.mouse_HMG_2	10	1	+	6.0787532694892805	-0.769188308791001	GTGCCTAACATTCAG
chr11	47711481	47711482	chr11:47711482:T:C	rs72911743	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	47738288	47738289	chr11:47738289:G:A	rs4752865	G	A	g	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr11	47870030	47870031	chr11:47870031:T:C	rs11604324	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	47904275	47904276	chr11:47904276:G:A	rs78102943	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	48123524	48123525	chr11:48123525:C:G	rs112223280	C	G	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	48308006	48308007	chr11:48308007:G:A	rs7934490	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	49225426	49225427	chr11:49225427:T:A	rs598101	T	A	t	Sox1.mouse_HMG_2	14	1	+	5.60402461698055	4.286315252297864	TCAAATTTCATTCAT
chr11	50421661	50421662	chr11:50421662:C:T	rs3853433	C	T	.	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	55324721	55324722	chr11:55324722:A:G	rs11607294	A	G	a	Sox1.mouse_HMG_2	13	1	+	10.792397395539075	5.846279707766427	ATGACTCACATTCAT
chr11	55474982	55474983	chr11:55474983:C:T	rs61917995	C	T	c	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	57304311	57304312	chr11:57304312:A:T	rs11228990	A	T	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	57362158	57362159	chr11:57362159:A:G	rs55756513	A	G	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr11	57386474	57386475	chr11:57386475:G:T	rs10792093	G	T	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	57556684	57556685	chr11:57556685:A:G	rs2848621	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	57667056	57667057	chr11:57667057:G:C	chr11:57667057:G:C	G	C	G	Sox1.mouse_HMG_2	0	1	-	3.773740766727528	3.4383807398106843	CTGAATTCCATTAGT
chr11	57971734	57971735	chr11:57971735:A:G	rs2175276	A	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	58579628	58579629	chr11:58579629:A:G	rs536802539	A	G	A	Sox1.mouse_HMG_2	6	1	+	3.7542633954156988	2.3140859735470594	GTGAGTAACAGTCTT
chr11	58579644	58579645	chr11:58579645:G:A	rs193214784	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	58714713	58714714	chr11:58714714:C:G	rs521200	C	G	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	59210960	59210961	chr11:59210961:C:A	rs180770562	C	A	.	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	59380751	59380752	chr11:59380752:A:G	rs60823267	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr11	59802761	59802762	chr11:59802762:G:A	rs75768611	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.285946523860889	-0.38664057980736566	CTGAATAAAAATCAC
chr11	59802794	59802795	chr11:59802795:C:T	rs482356	C	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	59992626	59992627	chr11:59992627:A:G	rs116905788	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	60070103	60070104	chr11:60070104:T:A	rs10897003	T	A	.	Sox1.mouse_HMG_2	9	1	-	4.7350259983534615	-2.1737287809617585	ATAAAATCCATTCAT
chr11	60830975	60830976	chr11:60830976:C:T	rs72915001	C	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	60970457	60970458	chr11:60970458:G:A	rs748681553	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	61022732	61022733	chr11:61022733:A:G	rs77015426	A	G	A	Sox1.mouse_HMG_2	0	1	+	5.272275632397668	4.268039399762465	ATGAATGACAGCCAG
chr11	61327874	61327875	chr11:61327875:A:T	rs17549396	A	T	A	Sox1.mouse_HMG_2	0	1	+	9.346821623388335	8.412002223900549	ATGAATACCTTTCAC
chr11	61327895	61327896	chr11:61327896:C:T	rs7397033	C	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr11	61513392	61513393	chr11:61513393:G:A	rs77046207	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr11	61513563	61513564	chr11:61513564:C:T	rs3019196	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr11	61614906	61614907	chr11:61614907:G:A	rs11230752	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	61662998	61662999	chr11:61662999:G:A	rs11230768	G	A	g	Sox1.mouse_HMG_2	0	1	+	3.923380203890446	4.927616436525648	GTGAAATAAATTCAT
chr11	61791938	61791939	chr11:61791939:G:A	rs781537474	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr11	61791973	61791974	chr11:61791974:C:T	rs695865	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	61871399	61871400	chr11:61871400:G:A	chr11:61871400:G:A	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	61871419	61871420	chr11:61871420:G:A	rs562447254	G	A	G	Sox1.mouse_HMG_2	13	1	+	3.638125799790256	8.584243487562905	GGGAATGCCATTCGG
chr11	61871428	61871429	chr11:61871429:G:A	rs1460677910	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	61871511	61871512	chr11:61871512:A:C	chr11:61871512:A:C	A	C	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr11	62725878	62725879	chr11:62725879:G:A	rs575555393	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	62929478	62929479	chr11:62929479:A:G	rs1938677	A	G	G	Sox1.mouse_HMG_2	10	1	-	5.098103811040189	-1.7498377672400915	ATAAATAACATCCAC
chr11	62929495	62929496	chr11:62929496:T:A	rs72931349	T	A	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	62963751	62963752	chr11:62963752:G:A	rs11231285	G	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	63028030	63028031	chr11:63028031:T:C	rs4963229	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	63099726	63099727	chr11:63099727:C:T	rs10897349	C	T	T	Sox1.mouse_HMG_2	0	1	-	3.6669213852605496	4.671157617895752	GTGAAAAACAGTCTT
chr11	63262652	63262653	chr11:63262653:C:T	rs112428201	C	T	C	Sox1.mouse_HMG_2	2	1	-	6.1081798276550705	1.4627772946388529	GTGAATAGTATTCTC
chr11	63277892	63277893	chr11:63277893:G:A	rs1205186	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr11	63756759	63756760	chr11:63756760:A:G	rs580695	A	G	G	Sox1.mouse_HMG_2	1	1	-	4.6278222184282	-0.016170089065032367	ATGAAGAACATTTAA
chr11	63872639	63872640	chr11:63872640:C:T	rs1476760761	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.207244372906673	-1.437182317475313	AGGAGTACCATTCAG
chr11	64197184	64197185	chr11:64197185:C:T	rs2236648	C	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr11	64487807	64487808	chr11:64487808:A:G	rs144993106	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	64555607	64555608	chr11:64555608:C:T	rs3759053	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	64646495	64646496	chr11:64646496:C:A	rs56105921	C	A	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	65279990	65279991	chr11:65279991:G:A	rs55760428	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	65450546	65450547	chr11:65450547:A:G	rs10896000	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	65457443	65457444	chr11:65457444:T:C	rs78789107	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	65708344	65708345	chr11:65708345:C:A	rs9666878	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	65911199	65911200	chr11:65911200:G:T	rs76214078	G	T	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	66160135	66160136	chr11:66160136:C:T	rs918299	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	66182202	66182203	chr11:66182203:T:A	rs6591207	T	A	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr11	66182217	66182218	chr11:66182218:A:C	rs6591208	A	C	A	Sox1.mouse_HMG_2	11	1	-	3.2948702988863827	-3.6138844804288377	ATGAATGCCAATTAC
chr11	66324342	66324343	chr11:66324343:G:A	rs3016311	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	66545554	66545555	chr11:66545555:A:G	rs11227527	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	67212739	67212740	chr11:67212740:G:A	rs115440009	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr11	67428483	67428484	chr11:67428484:C:T	rs1008144992	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	67519997	67519998	chr11:67519998:C:T	rs685350	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	67647582	67647583	chr11:67647583:C:T	rs2514036	C	T	T	Sox1.mouse_HMG_2	2	1	-	3.121404780439942	-1.5239977525762722	ATGAATACCAGCCTG
chr11	67748633	67748634	chr11:67748634:G:A	rs7934722	G	A	-	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	67902679	67902680	chr11:67902680:G:A	rs34945227	G	A	-	Sox1.mouse_HMG_2	7	1	+	3.4726390173975457	4.173693836938622	CTTAATGGCATTCTG
chr11	67902696	67902697	chr11:67902697:T:C	rs429542	T	C	-	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	68107868	68107869	chr11:68107869:T:C	rs80230354	T	C	T	Sox1.mouse_HMG_2	11	1	+	5.6565295887448634	-1.2522251905703565	CTGACTCCCAGTCAA
chr11	68199901	68199902	chr11:68199902:G:A	rs75585189	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.198125425903894	1.5255383222356382	ATTAATTCCATTCTT
chr11	68336833	68336834	chr11:68336834:C:T	rs648438	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr11	68449891	68449892	chr11:68449892:G:A	rs779713412	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr11	68574253	68574254	chr11:68574254:T:G	rs3740631	T	G	T	Sox1.mouse_HMG_2	11	1	+	7.884097975038629	0.9753431957234094	TTGAATTACATTTTT
chr11	68668358	68668359	chr11:68668359:A:G	rs4930595	A	G	A	Sox1.mouse_HMG_2	6	1	+	2.3394328822044876	0.8992554603358488	CTGAAAAGCTTTCAT
chr11	68979290	68979291	chr11:68979291:A:G	rs145193722	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr11	68979331	68979332	chr11:68979332:G:A	rs7950368	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	69283338	69283339	chr11:69283339:T:C	rs773287404	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	69572193	69572194	chr11:69572194:A:G	rs660963	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	69599686	69599687	chr11:69599687:T:C	rs80295953	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr11	69675232	69675233	chr11:69675233:C:T	rs56107468	C	T	C	Sox1.mouse_HMG_2	8	1	+	2.9777217549320563	-2.6667049354499306	CTGACTGCCAGCCAT
chr11	69867718	69867719	chr11:69867719:A:G	rs758978568	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.79518343785657	-2.1135713414586506	ATGAGTTCCATTTAT
chr11	69965105	69965106	chr11:69965106:G:C	rs56312015	G	C	G	Sox1.mouse_HMG_2	12	1	-	2.4997941328773896	-4.400654517588974	CTGCCTGACAGTCAC
chr11	70096109	70096110	chr11:70096110:C:T	rs2155455	C	T	c	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	70096117	70096118	chr11:70096118:C:G	chr11:70096118:C:G	C	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	70096117	70096118	chr11:70096118:C:T	rs2155454	C	T	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	70096120	70096121	chr11:70096121:C:T	rs10792738	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr11	70096121	70096122	chr11:70096122:G:A	rs78966445	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	70341676	70341677	chr11:70341677:A:G	rs6592542	A	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr11	70467640	70467641	chr11:70467641:T:C	rs188775855	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.428685778592467	-2.392726990567605	ATCAATATCAATCAT
chr11	70532866	70532867	chr11:70532867:G:A	rs11236569	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	70574442	70574443	chr11:70574443:A:G	rs10899200	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	70579544	70579545	chr11:70579545:G:A	rs34962816	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	70788410	70788411	chr11:70788411:A:G	rs55806020	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	70942659	70942660	chr11:70942660:G:A	rs78618018	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.7629236588333486	-0.8824788741828686	AGGATTTACATTCAG
chr11	71185774	71185775	chr11:71185775:G:T	rs7937397	G	T	.	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr11	71269859	71269860	chr11:71269860:C:T	rs10897897	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr11	71388976	71388977	chr11:71388977:A:G	rs28370535	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr11	71402257	71402258	chr11:71402258:C:T	rs1792325	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr11	71483162	71483163	chr11:71483163:A:G	rs3794066	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	71710578	71710579	chr11:71710579:G:A	rs146961101	G	A	g	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	71991630	71991631	chr11:71991631:A:G	rs141194893	A	G	A	Sox1.mouse_HMG_2	4	1	+	8.082924662477248	1.2615118933171763	ATGAATAGCAGTTAA
chr11	72016375	72016376	chr11:72016376:A:C	rs1057992	A	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr11	72294644	72294645	chr11:72294645:T:A	rs373383193	T	A	T	Sox1.mouse_HMG_2	13	1	+	3.457254027396531	6.651617580554824	GCGAATCACATTCTC
chr11	72396115	72396116	chr11:72396116:T:C	rs7941873	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	72812748	72812749	chr11:72812749:G:T	rs1126205	G	T	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	72823255	72823256	chr11:72823256:G:A	rs181881012	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	73214095	73214096	chr11:73214096:C:T	rs521241	C	T	C	Sox1.mouse_HMG_2	14	1	+	2.7661607697279207	3.6407731124506566	GTGGCTACCATTCTC
chr11	73229817	73229818	chr11:73229818:G:A	rs75290759	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr11	73229823	73229824	chr11:73229824:G:C	rs76289909	G	C	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	73778641	73778642	chr11:73778642:T:C	rs1614987	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	73778966	73778967	chr11:73778967:C:T	rs12793550	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	73856139	73856140	chr11:73856140:A:G	rs7948192	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.447620999192374	-2.4611337801228452	CAGCATATCATTCAT
chr11	74010162	74010163	chr11:74010163:G:A	rs78604943	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr11	74146746	74146747	chr11:74146747:C:T	rs61901249	C	T	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr11	74147843	74147844	chr11:74147844:C:T	rs191968849	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.4563972429083996	-2.1880294474735877	ATGAAATACATTCCT
chr11	74279296	74279297	chr11:74279297:A:C	rs112525190	A	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr11	74318266	74318267	chr11:74318267:A:G	rs545272481	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr11	74366714	74366715	chr11:74366715:C:T	rs150248375	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr11	74460070	74460071	chr11:74460071:T:C	rs17524	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	74460096	74460097	chr11:74460097:A:G	rs17532	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	74616946	74616947	chr11:74616947:A:G	rs12807883	A	G	A	Sox1.mouse_HMG_2	13	1	+	6.510072305823337	1.5639546180506894	CTCACTTTCATTCAC
chr11	75097014	75097015	chr11:75097015:C:T	rs78922030	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	75159249	75159250	chr11:75159250:T:C	rs17133760	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	75651482	75651483	chr11:75651483:G:T	rs3862804	G	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	75666180	75666181	chr11:75666181:T:A	rs656007	T	A	T	Sox1.mouse_HMG_2	5	1	+	3.71562011147295	-3.1931346678422696	CTCAATTACTTTCAT
chr11	76044119	76044120	chr11:76044120:G:C	rs141968149	G	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	76258475	76258476	chr11:76258476:C:T	rs12419430	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr11	76600575	76600576	chr11:76600576:G:A	rs7124842	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	76650174	76650175	chr11:76650175:G:A	rs145753653	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	76659043	76659044	chr11:76659044:C:A	rs1320645	C	A	A	Sox1.mouse_HMG_2	12	1	+	3.5824599889359403	-3.317988661530424	CTGAAAGTCATTCTC
chr11	76666774	76666775	chr11:76666775:G:A	rs6592657	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	76769210	76769211	chr11:76769211:C:T	rs12290350	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.008172591082536	-0.6644145125857195	AGGAATTTGATTCAG
chr11	76769525	76769526	chr11:76769526:A:G	rs1149603	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	76807429	76807430	chr11:76807430:G:A	rs1687688	G	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	76807430	76807431	chr11:76807431:A:G	rs1687689	A	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	76807450	76807451	chr11:76807451:A:G	rs1149623	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	76829262	76829263	chr11:76829263:T:G	rs11236959	T	G	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	77027084	77027085	chr11:77027085:G:T	rs1945084	G	T	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr11	77046922	77046923	chr11:77046923:C:T	rs12292204	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr11	77115305	77115306	chr11:77115306:C:T	rs563266751	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr11	77120964	77120965	chr11:77120965:C:T	rs2276031	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	77135821	77135822	chr11:77135822:A:T	rs7124742	A	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr11	77191470	77191471	chr11:77191471:C:T	rs529468057	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr11	77602537	77602538	chr11:77602538:G:A	rs713083	G	A	A	Sox1.mouse_HMG_2	8	1	-	6.353045694245923	0.7086190038639365	ATGATTCACATTCAT
chr11	77602562	77602563	chr11:77602563:A:G	rs114758204	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr11	77999685	77999686	chr11:77999686:A:G	rs112947024	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	78066774	78066775	chr11:78066775:C:G	rs10793281	C	G	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr11	78169247	78169248	chr11:78169248:C:T	rs57440798	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr11	78460771	78460772	chr11:78460772:C:A	rs118068872	C	A	C	Sox1.mouse_HMG_2	6	1	-	6.8259314098119495	7.425103396939195	TTGACTGCCATTTAC
chr11	78573872	78573873	chr11:78573873:T:C	rs143116603	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	78660518	78660519	chr11:78660519:G:A	rs80068138	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	78699632	78699633	chr11:78699633:C:T	rs67930048	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	78979047	78979048	chr11:78979048:G:A	rs1025595	G	A	G	Sox1.mouse_HMG_2	7	1	+	3.2789980082156998	3.9800528277567757	AAGAAATGCATTCAG
chr11	79018789	79018790	chr11:79018790:C:T	rs12785810	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr11	79046592	79046593	chr11:79046593:T:C	rs74878945	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.884102106695862	-1.9373106624642098	AAGAATACAAGTCAT
chr11	79046608	79046609	chr11:79046609:G:A	rs79483225	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	79080555	79080556	chr11:79080556:A:G	rs10793357	A	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr11	79431289	79431290	chr11:79431290:T:C	rs7106791	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr11	79594718	79594719	chr11:79594719:A:C	rs11237934	A	C	C	Sox1.mouse_HMG_2	14	1	-	3.9775541460401915	2.824486029252453	CCAAATACCATTCTT
chr11	79922866	79922867	chr11:79922867:C:T	rs2516342	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	79982347	79982348	chr11:79982348:T:G	rs493589	T	G	T	Sox1.mouse_HMG_2	3	1	-	5.319758764337506	-1.5889960149777145	ATGAATTCCATTGTC
chr11	80528354	80528355	chr11:80528355:G:C	rs11232183	G	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	80912933	80912934	chr11:80912934:C:T	rs4945463	C	T	C	Sox1.mouse_HMG_2	8	1	+	5.548846862442817	-0.0955798279391703	ATGAACACCATTTAT
chr11	80974137	80974138	chr11:80974138:A:T	rs12791153	A	T	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	81317427	81317428	chr11:81317428:C:T	rs12222309	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr11	81644748	81644749	chr11:81644749:C:T	rs72940294	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	81644749	81644750	chr11:81644750:A:G	rs1945703	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	81770397	81770398	chr11:81770398:T:C	rs7932553	T	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr11	81916680	81916681	chr11:81916681:G:A	rs11232926	G	A	G	Sox1.mouse_HMG_2	13	1	-	2.61140008564597	5.7377525416170245	TGGAATGCCATTCCC
chr11	82086788	82086789	chr11:82086789:T:C	rs625778	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr11	82642800	82642801	chr11:82642801:C:T	rs1939623	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr11	82680171	82680172	chr11:82680172:C:G	rs912731258	C	G	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	83054952	83054953	chr11:83054953:C:T	rs957044457	C	T	c	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr11	83473795	83473796	chr11:83473796:G:A	rs2043208	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	83510804	83510805	chr11:83510805:T:C	rs1258274743	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	83521707	83521708	chr11:83521708:C:G	rs1835762	C	G	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	83694401	83694402	chr11:83694402:C:T	rs149410722	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr11	83951603	83951604	chr11:83951604:G:T	rs7117345	G	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	84035900	84035901	chr11:84035901:C:T	rs7123249	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	84129022	84129023	chr11:84129023:G:A	rs11824023	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	84165031	84165032	chr11:84165032:C:T	rs141586926	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr11	84200929	84200930	chr11:84200930:C:T	rs2168007	C	T	C	Sox1.mouse_HMG_2	7	1	+	4.614027462955028	4.153083009247921	TTGAATACCTTTTAT
chr11	84437075	84437076	chr11:84437076:C:T	rs583862	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	84818208	84818209	chr11:84818209:C:A	rs10792782	C	A	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	84890747	84890748	chr11:84890748:T:C	rs1943734	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	84901515	84901516	chr11:84901516:C:T	rs11234233	C	T	T	Sox1.mouse_HMG_2	9	1	+	8.442780147721281	8.442780147721281	ATGAATATCCTTCAA
chr11	86069617	86069618	chr11:86069618:C:T	rs558214203	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr11	86163201	86163202	chr11:86163202:G:T	rs11828005	G	T	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	86163206	86163207	chr11:86163207:A:C	rs7934191	A	C	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	86493312	86493313	chr11:86493313:G:A	rs376697173	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	86497291	86497292	chr11:86497292:T:C	rs612163	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr11	86497571	86497572	chr11:86497572:A:G	rs610842	A	G	G	Sox1.mouse_HMG_2	13	1	+	12.60176639547201	7.6556487076993625	TTGAATTCCAGTCAT
chr11	86497574	86497575	chr11:86497575:C:G	rs116133966	C	G	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	86553071	86553072	chr11:86553072:G:A	rs11234691	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	86589403	86589404	chr11:86589404:G:A	rs1945035	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	86717206	86717207	chr11:86717207:A:G	rs148307050	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr11	86804118	86804119	chr11:86804119:T:C	rs72969430	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.179211765638681	-1.7295430136765395	CTGAATAGCATCCTC
chr11	86815414	86815415	chr11:86815415:A:C	rs7131625	A	C	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr11	86873903	86873904	chr11:86873904:A:G	rs2508426	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	87029181	87029182	chr11:87029182:C:A	rs11234919	C	A	C	Sox1.mouse_HMG_2	0	1	+	7.955168929531652	8.624045135250011	CTGAATTACTTTCAG
chr11	87037008	87037009	chr11:87037009:G:T	rs11234925	G	T	G	Sox1.mouse_HMG_2	7	1	-	5.38136395073633	5.7780486714044	AAGAATTCCATTCGA
chr11	87136361	87136362	chr11:87136362:A:G	rs485773	A	G	G	Sox1.mouse_HMG_2	13	1	+	6.979303092933972	2.033185405161324	ATAAATCCCATTCAG
chr11	87295181	87295182	chr11:87295182:G:A	rs1893005	G	A	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	87401807	87401808	chr11:87401808:G:A	rs940611962	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr11	87444468	87444469	chr11:87444469:G:A	rs7118472	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	87454396	87454397	chr11:87454397:T:C	rs11235153	T	C	C	Sox1.mouse_HMG_2	7	1	-	4.517085142915188	3.816030323374112	TTGAATCACACTCAC
chr11	87843220	87843221	chr11:87843221:G:A	rs2514234	G	A	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	88064403	88064404	chr11:88064404:C:A	rs499271	C	A	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr11	88246871	88246872	chr11:88246872:T:C	rs138925379	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	88292567	88292568	chr11:88292568:A:G	rs571234587	A	G	A	Sox1.mouse_HMG_2	14	1	+	4.770056414447055	4.9346976623420025	GGAAATTACATTCAA
chr11	88360307	88360308	chr11:88360308:T:C	rs4753358	T	C	C	Sox1.mouse_HMG_2	9	1	-	3.231841751263367	-3.6769130280518545	CTGAAAACCATTCCT
chr11	88371154	88371155	chr11:88371155:T:C	chr11:88371155:T:C	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr11	88478736	88478737	chr11:88478737:A:C	rs308779	A	C	-	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr11	88552862	88552863	chr11:88552863:T:G	rs308785	T	G	T	Sox1.mouse_HMG_2	13	1	-	7.278687137978652	0.9579711288493052	TTTAATTGCATTCAC
chr11	88576094	88576095	chr11:88576095:G:A	rs7931809	G	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	88660877	88660878	chr11:88660878:T:C	rs61902896	T	C	T	Sox1.mouse_HMG_2	0	1	-	7.501208009843736	6.496971777208532	ATGAATTACATTTTA
chr11	88757675	88757676	chr11:88757676:A:G	rs2126741	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	88799798	88799799	chr11:88799799:C:T	rs4002398	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	89197731	89197732	chr11:89197732:G:A	rs7925468	G	A	g	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	89197764	89197765	chr11:89197765:A:G	rs77973279	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	89490363	89490364	chr11:89490364:A:G	rs1340192855	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	89555144	89555145	chr11:89555145:T:C	rs2196501	T	C	.	Sox1.mouse_HMG_2	14	1	+	6.198125425903894	5.323513083181157	ATTAATTCCATTCTT
chr11	89604434	89604435	chr11:89604435:T:G	rs116971302	T	G	t	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr11	90147793	90147794	chr11:90147794:G:T	rs80169737	G	T	.	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr11	90352842	90352843	chr11:90352843:C:T	rs72960891	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	90706722	90706723	chr11:90706723:T:C	rs73535159	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr11	90732714	90732715	chr11:90732715:A:G	rs12288659	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	91079184	91079185	chr11:91079185:A:G	rs16915484	A	G	A	Sox1.mouse_HMG_2	9	1	+	6.120996313134361	-0.7877584661808599	TTAAATAACATTTAG
chr11	91676615	91676616	chr11:91676616:T:C	rs12418246	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.18893572129223	-1.7198190580229904	TTGACTTCCATGCAC
chr11	91749749	91749750	chr11:91749750:C:T	rs2568725	C	T	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	92388075	92388076	chr11:92388076:G:A	rs481643	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr11	92480730	92480731	chr11:92480731:G:A	rs487872	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr11	92501366	92501367	chr11:92501367:G:A	rs615011	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.917054825288408	0.2444677216201535	AGGAATACCAGTCTA
chr11	92695163	92695164	chr11:92695164:C:A	rs479324	C	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	92754328	92754329	chr11:92754329:A:G	rs12270559	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	92861516	92861517	chr11:92861517:T:C	rs3842934	T	C	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	93051341	93051342	chr11:93051342:C:T	rs75750594	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	93198881	93198882	chr11:93198882:G:T	rs1446911	G	T	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr11	93218139	93218140	chr11:93218140:G:T	rs58121936	G	T	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr11	93295706	93295707	chr11:93295707:T:G	rs7114042	T	G	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	93303491	93303492	chr11:93303492:A:G	rs11020253	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr11	93497657	93497658	chr11:93497658:G:C	rs11606262	G	C	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr11	93652036	93652037	chr11:93652037:T:C	rs12274112	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	93652466	93652467	chr11:93652467:G:A	rs16919124	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	93842832	93842833	chr11:93842833:G:A	rs11020533	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	93895609	93895610	chr11:93895610:A:C	chr11:93895610:A:C	A	C	A	Sox1.mouse_HMG_2	1	1	-	5.718464081444572	0.770000594872763	GTGAACAGCATTCTT
chr11	93895623	93895624	chr11:93895624:T:G	rs905844164	T	G	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr11	93920081	93920082	chr11:93920082:G:T	rs9888156	G	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	93941565	93941566	chr11:93941566:G:A	rs4753524	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	94032153	94032154	chr11:94032154:T:C	rs1518563	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	94138763	94138764	chr11:94138764:A:G	rs111324910	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr11	94185183	94185184	chr11:94185184:T:C	rs1046173	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr11	94199551	94199552	chr11:94199552:C:G	rs4753547	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	94433273	94433274	chr11:94433274:T:C	rs584707	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.313019583166702	-3.595735196148518	GTGATTTACATTTAC
chr11	94573835	94573836	chr11:94573836:G:A	rs1939139	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	94897469	94897470	chr11:94897470:C:G	rs782159331	C	G	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr11	94897470	94897471	chr11:94897471:A:C	rs141940459	A	C	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	94938637	94938638	chr11:94938638:A:G	rs7950995	A	G	A	Sox1.mouse_HMG_2	13	1	+	2.617108991711121	-2.329008696061527	ATGAAGAACAATCAG
chr11	94938638	94938639	chr11:94938639:G:A	rs142628951	G	A	G	Sox1.mouse_HMG_2	14	1	+	2.617108991711121	2.4524677438161735	ATGAAGAACAATCAG
chr11	95337240	95337241	chr11:95337241:T:C	rs76032691	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr11	95416103	95416104	chr11:95416104:C:T	rs4753674	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr11	95614438	95614439	chr11:95614439:A:G	rs76810756	A	G	A	Sox1.mouse_HMG_2	14	1	-	2.830757605753099	1.9561452630303633	CTGCCTTGCATTCTT
chr11	95723372	95723373	chr11:95723373:G:A	rs1789296	G	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	95795726	95795727	chr11:95795727:G:T	rs12271427	G	T	g	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr11	95863708	95863709	chr11:95863709:C:T	rs473155	C	T	C	Sox1.mouse_HMG_2	14	1	+	6.211627487397711	7.086239830120447	AGGAATGTCATTCTC
chr11	96001139	96001140	chr11:96001140:G:A	rs140738004	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr11	96056222	96056223	chr11:96056223:T:G	rs1940156	T	G	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	96076240	96076241	chr11:96076241:A:G	rs112232052	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	96088513	96088514	chr11:96088514:T:G	rs1939484	T	G	G	Sox1.mouse_HMG_2	11	1	+	3.7631899192850793	-3.1455648600301402	CAGAAATGCATTCAT
chr11	96228771	96228772	chr11:96228772:T:C	rs182811811	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.037066757637302	-2.8108748206429794	GTGAATTCCATTGTG
chr11	96235820	96235821	chr11:96235821:C:T	rs16923395	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	96320301	96320302	chr11:96320302:T:A	rs112104971	T	A	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr11	96325080	96325081	chr11:96325081:C:T	rs4753195	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	96456274	96456275	chr11:96456275:G:C	rs112386333	G	C	G	Sox1.mouse_HMG_2	7	1	+	4.559642957910269	4.864013056783273	CTGACTGGCATTAAC
chr11	96528124	96528125	chr11:96528125:T:C	rs670417	T	C	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	96701203	96701204	chr11:96701204:G:C	rs79042830	G	C	G	Sox1.mouse_HMG_2	12	1	-	5.857566369263172	-1.042882281203191	CTGAATCGCAGTCTT
chr11	97614629	97614630	chr11:97614630:C:T	rs7932644	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr11	97796971	97796972	chr11:97796972:T:C	rs12577257	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	98496281	98496282	chr11:98496282:T:C	rs10790091	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr11	98693091	98693092	chr11:98693092:T:C	rs10892153	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr11	99171897	99171898	chr11:99171898:G:A	rs4143857	G	A	G	Sox1.mouse_HMG_2	2	1	+	9.026942200061619	4.3815396670454	GCGAATTTCATTCAG
chr11	99773795	99773796	chr11:99773796:A:G	chr11:99773796:A:G	A	G	A	Sox1.mouse_HMG_2	6	1	-	4.375302251474104	0.8638926835271322	TTGAATTCCAGCCAA
chr11	99974559	99974560	chr11:99974560:A:T	rs11222118	A	T	A	Sox1.mouse_HMG_2	7	1	-	5.116497204910732	5.974126379285908	AAGAATATCCTTCAT
chr11	99974568	99974569	chr11:99974569:T:C	rs7125323	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	100302761	100302762	chr11:100302762:C:A	rs593499	C	A	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	100515543	100515544	chr11:100515544:T:C	rs12289202	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	100566690	100566691	chr11:100566691:A:G	rs1216577	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr11	100575549	100575550	chr11:100575550:C:A	rs11224292	C	A	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	100641160	100641161	chr11:100641161:T:C	rs916482	T	C	C	Sox1.mouse_HMG_2	7	1	-	4.038872596909364	3.3378177773682887	TTGAAGAATATTCAT
chr11	100772230	100772231	chr11:100772231:A:G	rs61890765	A	G	G	Sox1.mouse_HMG_2	6	1	-	7.0975397551564745	3.586130187209502	CTGAAATTCATTCAG
chr11	100776204	100776205	chr11:100776205:C:T	rs507695	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr11	100817107	100817108	chr11:100817108:G:C	rs10895017	G	C	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr11	100851321	100851322	chr11:100851322:T:C	rs11604197	T	C	T	Sox1.mouse_HMG_2	14	1	+	3.104433207938976	2.22982086521624	GTGCATGCCATTTAT
chr11	100890487	100890488	chr11:100890488:A:T	rs10791431	A	T	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr11	100978941	100978942	chr11:100978942:A:C	rs10791440	A	C	A	Sox1.mouse_HMG_2	11	1	-	5.624537179136618	-1.2842176001786032	GTCAATCACATTCAG
chr11	100988707	100988708	chr11:100988708:G:A	rs524811	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	101510241	101510242	chr11:101510242:A:G	rs7109127	A	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr11	101676991	101676992	chr11:101676992:T:C	rs1938859	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	101706101	101706102	chr11:101706102:A:G	rs67807450	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr11	101766474	101766475	chr11:101766475:T:C	rs734953	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	102007334	102007335	chr11:102007335:A:G	rs11225103	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	102126022	102126023	chr11:102126023:A:G	rs73577867	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	102502665	102502666	chr11:102502666:G:T	rs1620999	G	T	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr11	102503060	102503061	chr11:102503061:G:A	rs676452	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.631803974585106	-1.0126227157968812	GGCAATACCATTCAG
chr11	102602516	102602517	chr11:102602517:T:C	rs1784437	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.547811806371358	1.903819498878124	ATGCATAACAGTCAA
chr11	102632605	102632606	chr11:102632606:C:T	rs10895327	C	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	102798580	102798581	chr11:102798581:A:T	rs475007	A	T	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	102802458	102802459	chr11:102802459:G:T	rs139267074	G	T	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr11	102843896	102843897	chr11:102843897:A:G	rs3025091	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	102844316	102844317	chr11:102844317:T:C	rs522616	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr11	103254243	103254244	chr11:103254244:T:C	rs1346882	T	C	C	Sox1.mouse_HMG_2	10	1	+	5.056482847219156	-1.7914587310611245	GTGACAATCATTCAA
chr11	103343159	103343160	chr11:103343160:T:C	rs61896780	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	103343165	103343166	chr11:103343166:G:A	rs61896781	G	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	103609560	103609561	chr11:103609561:A:G	rs77934172	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr11	103792959	103792960	chr11:103792960:T:C	rs1032819217	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr11	103797881	103797882	chr11:103797882:A:C	rs1531837	A	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr11	104000675	104000676	chr11:104000676:A:C	rs12146566	A	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	104033736	104033737	chr11:104033737:A:C	rs80177496	A	C	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	104121367	104121368	chr11:104121368:T:C	rs361295	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	104155454	104155455	chr11:104155455:T:C	rs7126071	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr11	104332220	104332221	chr11:104332221:A:G	rs12146572	A	G	a	Sox1.mouse_HMG_2	5	1	-	6.792030927894265	-0.11672385142095615	CTGAATAAGATTCTG
chr11	104332241	104332242	chr11:104332242:G:C	rs12146628	G	C	g	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr11	104371539	104371540	chr11:104371540:A:G	rs1488958	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	104485045	104485046	chr11:104485046:A:G	rs75994262	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	104700304	104700305	chr11:104700305:C:A	rs4584548	C	A	C	Sox1.mouse_HMG_2	8	1	+	5.2825228922111345	0.4330260766990358	ATGAATGGCCTTCTT
chr11	104707385	104707386	chr11:104707386:G:A	rs1200613	G	A	A	Sox1.mouse_HMG_2	7	1	-	4.1199023627515245	3.6589579090444184	AGGAATACCTTTCAG
chr11	104763878	104763879	chr11:104763879:A:G	rs2845897	A	G	A	Sox1.mouse_HMG_2	2	1	-	3.595428554781214	5.099505951557487	ACTAATTCCATTCAG
chr11	104824272	104824273	chr11:104824273:T:C	rs6591100	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	105033256	105033257	chr11:105033257:A:C	rs570685	A	C	.	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	105653506	105653507	chr11:105653507:A:G	rs7114305	A	G	G	Sox1.mouse_HMG_2	14	1	-	4.652073591596349	3.777461248873613	TTGCATGCCATTCTT
chr11	105799996	105799997	chr11:105799997:G:T	rs7129285	G	T	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	106250505	106250506	chr11:106250506:G:A	rs7106919	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr11	106250547	106250548	chr11:106250548:T:G	rs7126900	T	G	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	106369383	106369384	chr11:106369384:A:G	rs115405018	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	106466700	106466701	chr11:106466701:G:C	rs13377285	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	106495045	106495046	chr11:106495046:G:A	rs77205104	G	A	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	106746097	106746098	chr11:106746098:G:C	rs112093494	G	C	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr11	106834790	106834791	chr11:106834791:G:A	rs1352314	G	A	G	Sox1.mouse_HMG_2	6	1	+	3.2187991463001095	4.658976568168748	GTAAATGCCAGTCTC
chr11	106905067	106905068	chr11:106905068:G:A	rs12364578	G	A	A	Sox1.mouse_HMG_2	8	1	-	6.3908159515356235	0.7463892611536372	GTGCCTTACATTCAT
chr11	107015331	107015332	chr11:107015332:C:A	rs2445114	C	A	C	Sox1.mouse_HMG_2	8	1	+	5.483581864511685	0.6340850489995863	CTGAAAACCATTCTC
chr11	107529987	107529988	chr11:107529988:T:C	rs61908181	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.852540858046432	3.412363436177794	GTCACTAGCATTCTT
chr11	107752774	107752775	chr11:107752775:A:G	rs2442675	A	G	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	107857935	107857936	chr11:107857936:A:G	rs924860	A	G	a	Sox1.mouse_HMG_2	14	1	-	3.5011179286070457	2.62650558588431	GTGAAAGACATTTAT
chr11	108224492	108224493	chr11:108224493:A:G	rs625120	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.246896973994316	-2.6010446042859656	ATGAACTTCATTTAT
chr11	108428124	108428125	chr11:108428125:A:G	rs61913875	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr11	108512948	108512949	chr11:108512949:A:G	rs10749920	A	G	G	Sox1.mouse_HMG_2	13	1	+	5.007346490558487	0.06122880278583892	TTGAGTATCAGTCAG
chr11	108566309	108566310	chr11:108566310:A:G	rs55645834	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	108587351	108587352	chr11:108587352:T:A	rs75838568	T	A	T	Sox1.mouse_HMG_2	10	1	+	6.6925690704711265	-0.155372507809154	CTGACTAACCTTCAC
chr11	108589032	108589033	chr11:108589033:C:T	rs2640735	C	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	108622463	108622464	chr11:108622464:G:A	rs2640761	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	108756856	108756857	chr11:108756857:A:G	rs138261853	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	108788790	108788791	chr11:108788791:C:A	rs10789680	C	A	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr11	108805222	108805223	chr11:108805223:T:C	chr11:108805223:T:C	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr11	109794366	109794367	chr11:109794367:T:C	rs2716023	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	109915411	109915412	chr11:109915412:T:G	rs137892618	T	G	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr11	110068768	110068769	chr11:110068769:A:T	rs7932082	A	T	A	Sox1.mouse_HMG_2	3	1	+	4.367700917963772	-2.541053861351449	GTGAATACACTTCAT
chr11	110077116	110077117	chr11:110077117:T:A	rs12291126	T	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	110094573	110094574	chr11:110094574:A:G	rs74840329	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr11	110095012	110095013	chr11:110095013:C:T	rs117104919	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.132393267355978	-1.51203342302601	GTGACTGGCATTTTT
chr11	110339605	110339606	chr11:110339606:G:T	rs78625246	G	T	G	Sox1.mouse_HMG_2	2	1	+	7.149328094241209	0.25263376261849724	TAGACTTGCATTCAC
chr11	110339606	110339607	chr11:110339607:A:T	rs75136231	A	T	A	Sox1.mouse_HMG_2	3	1	+	7.149328094241209	0.24057331492599024	TAGACTTGCATTCAC
chr11	110564570	110564571	chr11:110564571:A:G	rs10891144	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	110564594	110564595	chr11:110564595:A:G	rs11213479	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	110728951	110728952	chr11:110728952:C:T	rs78129696	C	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr11	110728952	110728953	chr11:110728953:G:A	rs1395302	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr11	110761102	110761103	chr11:110761103:A:G	rs10488724	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	110812704	110812705	chr11:110812705:C:T	rs117811362	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	110935377	110935378	chr11:110935378:G:T	rs73005152	G	T	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	110948341	110948342	chr11:110948342:A:G	rs59347061	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.918180879138574	0.9720631913659258	CTCAATAACATTTAC
chr11	110989175	110989176	chr11:110989176:T:A	rs17656342	T	A	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	110989480	110989481	chr11:110989481:A:G	rs139283199	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	111051021	111051022	chr11:111051022:G:T	rs111849446	G	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	111344128	111344129	chr11:111344129:T:C	rs73558279	T	C	T	Sox1.mouse_HMG_2	5	1	+	2.8170346815669376	-4.091720097748281	ATGCATAGCAGTCTG
chr11	111423663	111423664	chr11:111423664:T:C	rs6589236	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr11	111426999	111427000	chr11:111427000:A:G	rs4938591	A	G	A	Sox1.mouse_HMG_2	0	1	-	3.724575018383897	3.9905182121533294	TTGATTTTCATTCTG
chr11	111565661	111565662	chr11:111565662:A:G	rs1944119	A	G	G	Sox1.mouse_HMG_2	9	1	+	7.984664678174781	1.0759098988595595	TTGAATTTCATCCAT
chr11	111633955	111633956	chr11:111633956:A:G	rs572721334	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	112266022	112266023	chr11:112266023:A:G	rs117104262	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr11	112306599	112306600	chr11:112306600:T:C	rs901410340	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	112591112	112591113	chr11:112591113:G:T	rs2000919	G	T	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr11	112759609	112759610	chr11:112759610:C:A	rs11607587	C	A	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	112770807	112770808	chr11:112770808:C:T	rs10891431	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr11	112878471	112878472	chr11:112878472:C:T	rs190030739	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	112907694	112907695	chr11:112907695:T:C	rs1447480	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr11	112964040	112964041	chr11:112964041:T:A	rs57715877	T	A	-	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	113327962	113327963	chr11:113327963:C:G	rs45627831	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	113371154	113371155	chr11:113371155:C:T	rs1078	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr11	113447685	113447686	chr11:113447686:T:C	rs4936270	T	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr11	113581042	113581043	chr11:113581043:G:T	rs7940164	G	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	113668357	113668358	chr11:113668358:A:G	rs3934007	A	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr11	113841555	113841556	chr11:113841556:G:T	rs2513577	G	T	T	Sox1.mouse_HMG_2	8	1	-	4.424516725709763	-0.42498008980233537	CTGAATGACATTTCT
chr11	113841569	113841570	chr11:113841570:T:C	rs140896766	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr11	114080927	114080928	chr11:114080928:A:G	rs10891628	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	114122894	114122895	chr11:114122895:G:A	rs656802	G	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr11	114123197	114123198	chr11:114123198:A:T	rs7117793	A	T	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	114262614	114262615	chr11:114262615:A:G	rs17116773	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	114817765	114817766	chr11:114817766:A:G	rs11823831	A	G	G	Sox1.mouse_HMG_2	14	1	+	5.177880781111925	5.342522029006873	CTGAATAGCAGGCAA
chr11	115073362	115073363	chr11:115073363:C:T	rs2513678	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr11	115169419	115169420	chr11:115169420:G:C	rs17118020	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr11	115194171	115194172	chr11:115194172:C:G	rs1170043416	C	G	C	Sox1.mouse_HMG_2	7	1	+	4.6603797204452055	4.356009621572201	TTGAATGCCATTGTT
chr11	115219206	115219207	chr11:115219207:T:C	rs6589487	T	C	T	Sox1.mouse_HMG_2	4	1	+	4.643967556369494	9.083319257662643	CTCATTAACATTCAT
chr11	115222521	115222522	chr11:115222522:C:A	rs73572149	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	115440853	115440854	chr11:115440854:C:T	rs170223	C	T	T	Sox1.mouse_HMG_2	0	1	-	2.8794063835886523	3.8836426162238538	GTGACTCACGTTCAT
chr11	115503344	115503345	chr11:115503345:G:A	rs968230815	G	A	-	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr11	115528619	115528620	chr11:115528620:T:C	rs693245	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	115545627	115545628	chr11:115545628:G:C	rs10502206	G	C	G	Sox1.mouse_HMG_2	12	1	-	2.3506292029807554	-4.549819447485609	GGGAAAGACATTCAC
chr11	115592549	115592550	chr11:115592550:T:C	rs2515331	T	C	-	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr11	116036714	116036715	chr11:116036715:C:T	rs431736	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr11	116068720	116068721	chr11:116068721:G:A	rs11215776	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	116356541	116356542	chr11:116356542:G:A	rs497898	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	116366978	116366979	chr11:116366979:G:A	rs79733808	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr11	116733353	116733354	chr11:116733354:T:C	rs180353	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	116857543	116857544	chr11:116857544:C:T	rs75385236	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	116879909	116879910	chr11:116879910:G:A	rs116724830	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	116930197	116930198	chr11:116930198:T:A	rs910685632	T	A	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr11	117000752	117000753	chr11:117000753:C:T	rs76901578	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.4320661250034386	5.1331209445445145	AAGAAATGCATTCAT
chr11	117046006	117046007	chr11:117046007:G:A	rs60101932	G	A	G	Sox1.mouse_HMG_2	10	1	+	5.9735756035335426	1.8782315409783594	CTGACTTCCAGTCTA
chr11	117199974	117199975	chr11:117199975:G:A	rs526602	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	117217365	117217366	chr11:117217366:C:T	rs2238005	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr11	117455181	117455182	chr11:117455182:G:A	rs7103239	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.375379996734684	5.379616229369885	GTGAGTTTCAGTCAC
chr11	117478685	117478686	chr11:117478686:A:G	rs56057635	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.4034713288284175	3.3992350961932147	ATGAATTGCATCTAT
chr11	117818667	117818668	chr11:117818668:C:T	rs73018459	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	117823373	117823374	chr11:117823374:A:G	rs635706	A	G	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	117938137	117938138	chr11:117938138:A:G	rs7105537	A	G	g	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	118022802	118022803	chr11:118022803:G:T	rs73013721	G	T	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr11	118251273	118251274	chr11:118251274:C:A	rs76935442	C	A	C	Sox1.mouse_HMG_2	0	1	-	8.496149475210254	8.565566308357665	GTGACTAATATTCAT
chr11	118344458	118344459	chr11:118344459:G:A	rs181713283	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.515188685660393	-1.1302138473558232	CTGGCTATCATTCTT
chr11	118537755	118537756	chr11:118537756:C:T	rs73022038	C	T	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	118683078	118683079	chr11:118683079:C:T	rs12788848	C	T	C	Sox1.mouse_HMG_2	0	1	+	4.920552328870442	4.654609135101009	CTAACTTACATTCTC
chr11	118821265	118821266	chr11:118821266:T:A	rs77731159	T	A	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	118852669	118852670	chr11:118852670:G:A	rs7103067	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr11	119091299	119091300	chr11:119091300:C:G	rs150524167	C	G	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr11	119351995	119351996	chr11:119351996:G:A	rs7122785	G	A	G	Sox1.mouse_HMG_2	14	1	-	8.621971515376272	9.496583858099006	GAGACTAACATTCAC
chr11	119703349	119703350	chr11:119703350:G:C	rs6589769	G	C	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	119802118	119802119	chr11:119802119:G:C	rs80316638	G	C	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr11	119902682	119902683	chr11:119902683:T:C	rs114095755	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr11	120010816	120010817	chr11:120010817:A:G	rs1893394	A	G	G	Sox1.mouse_HMG_2	14	1	-	8.521125506884653	7.646513164161917	CTTAATGACATTCAT
chr11	120077856	120077857	chr11:120077857:C:T	rs4938769	C	T	C	Sox1.mouse_HMG_2	0	1	+	3.50512604358236	3.2391828498129276	CGGAATCTCATTCTT
chr11	120212409	120212410	chr11:120212410:T:C	rs72645479	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	120362701	120362702	chr11:120362702:C:T	rs115635739	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.5339489574172696	-0.11145357559894975	ACGAAAGACATTCAT
chr11	120516689	120516690	chr11:120516690:T:C	rs60854982	T	C	C	Sox1.mouse_HMG_2	13	1	+	6.410313645188647	3.2839611892175924	TTGAATGACATTTTC
chr11	120750892	120750893	chr11:120750893:G:A	rs1945011	G	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	120780466	120780467	chr11:120780467:T:G	rs184799334	T	G	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr11	120784913	120784914	chr11:120784914:G:A	rs1815952	G	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	120806688	120806689	chr11:120806689:T:C	rs948034	T	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr11	120987700	120987701	chr11:120987701:G:A	rs2282586	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	121025454	121025455	chr11:121025455:A:C	rs550244344	A	C	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr11	121025455	121025456	chr11:121025456:T:C	chr11:121025456:T:C	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	121039240	121039241	chr11:121039241:T:C	rs114233370	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr11	121105718	121105719	chr11:121105719:A:G	rs504626	A	G	G	Sox1.mouse_HMG_2	9	1	+	12.449684027157232	5.540929247842011	ATGACTTGCATTCAG
chr11	121341999	121342000	chr11:121342000:T:G	rs11218266	T	G	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	121452767	121452768	chr11:121452768:G:C	rs578506	G	C	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	121544069	121544070	chr11:121544070:G:C	rs4935776	G	C	g	Sox1.mouse_HMG_2	12	1	-	2.8205103459396326	-4.079938304526731	CTGACTTACAGACAG
chr11	121721836	121721837	chr11:121721837:C:A	rs4450182	C	A	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr11	121763338	121763339	chr11:121763339:A:C	rs1944690	A	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	121873660	121873661	chr11:121873661:G:C	rs1219406	G	C	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	121915341	121915342	chr11:121915342:G:A	rs10790476	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	121932805	121932806	chr11:121932806:T:A	rs1219444	T	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr11	121996802	121996803	chr11:121996803:T:C	rs4084215	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr11	122099560	122099561	chr11:122099561:C:T	rs643925	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	122163626	122163627	chr11:122163627:T:G	rs512540	T	G	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr11	122305674	122305675	chr11:122305675:G:A	rs4127499	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr11	122305714	122305715	chr11:122305715:C:T	rs79436991	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	122404516	122404517	chr11:122404517:G:C	rs492127	G	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr11	122634707	122634708	chr11:122634708:G:A	rs10750216	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr11	122674302	122674303	chr11:122674303:C:G	rs11600391	C	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	122704228	122704229	chr11:122704229:A:G	rs1344168	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	122704245	122704246	chr11:122704246:T:C	rs955049	T	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr11	122740151	122740152	chr11:122740152:G:A	rs1894087	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	122848025	122848026	chr11:122848026:G:A	rs73602749	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.038951276770229	0.36636417310197367	ATGAATAAAATTCCA
chr11	122880399	122880400	chr11:122880400:C:T	rs3134404	C	T	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	123156874	123156875	chr11:123156875:T:G	rs10400282	T	G	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	123286425	123286426	chr11:123286426:T:C	rs10892996	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.731144991232641	-4.11679658704764	CTGAGTACCCTTCAT
chr11	123393933	123393934	chr11:123393934:C:A	rs1943466	C	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	123488165	123488166	chr11:123488166:A:C	rs2846321	A	C	A	Sox1.mouse_HMG_2	9	1	+	5.145181392237022	-1.763573387078198	ACTAATTACATTCAT
chr11	123512813	123512814	chr11:123512814:C:T	rs12577152	C	T	T	Sox1.mouse_HMG_2	2	1	-	7.558484208863579	2.913081675847364	CTGAAGTCCATTCAG
chr11	123536722	123536723	chr11:123536723:C:T	rs1794192	C	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr11	123610849	123610850	chr11:123610850:C:G	rs11219208	C	G	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	123799748	123799749	chr11:123799749:G:A	rs11605363	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr11	124110361	124110362	chr11:124110362:G:T	rs75656243	G	T	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr11	124255812	124255813	chr11:124255813:C:T	rs78811786	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr11	124380890	124380891	chr11:124380891:C:A	rs555861	C	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr11	124394739	124394740	chr11:124394740:G:T	rs4936923	G	T	g	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr11	124623514	124623515	chr11:124623515:G:A	rs679079	G	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	124643798	124643799	chr11:124643799:A:C	rs116597850	A	C	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	124848905	124848906	chr11:124848906:A:G	rs11219806	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	124915737	124915738	chr11:124915738:C:T	rs61465638	C	T	C	Sox1.mouse_HMG_2	5	1	-	3.6757489144768956	3.6757489144768956	ATCAAGACCATTCAG
chr11	125061437	125061438	chr11:125061438:G:A	rs4078355	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr11	125129724	125129725	chr11:125129725:C:T	rs7104935	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.045461087914619	-1.5999414451015972	ATGTATAGGATTCAG
chr11	125314577	125314578	chr11:125314578:G:A	rs79277480	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr11	125390909	125390910	chr11:125390910:C:G	rs12419130	C	G	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr11	125421748	125421749	chr11:125421749:A:G	rs608501	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	125987849	125987850	chr11:125987850:A:G	rs486304	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr11	126210456	126210457	chr11:126210457:A:G	rs602735	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr11	126210485	126210486	chr11:126210486:C:T	rs34399328	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	126542447	126542448	chr11:126542448:C:T	rs527629	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr11	126548783	126548784	chr11:126548784:T:C	rs75243969	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr11	126548822	126548823	chr11:126548823:C:T	rs113982080	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr11	126549244	126549245	chr11:126549245:A:C	rs61901060	A	C	A	Sox1.mouse_HMG_2	11	1	-	7.102114196327482	0.19335941701226073	TTTAATGACATTCAG
chr11	126556821	126556822	chr11:126556822:A:T	rs67508732	A	T	T	Sox1.mouse_HMG_2	0	1	+	6.0335293547978655	5.098709955310073	ATAAATAACAATCAT
chr11	126573941	126573942	chr11:126573942:T:C	rs11220543	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr11	126830447	126830448	chr11:126830448:G:A	rs73026580	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	126886758	126886759	chr11:126886759:A:C	rs1939998	A	C	C	Sox1.mouse_HMG_2	7	1	+	4.1870352561353235	3.7903505354672533	GGGAATGACAGTCTT
chr11	126997444	126997445	chr11:126997445:G:A	rs11220694	G	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr11	127013726	127013727	chr11:127013727:T:C	rs521381	T	C	T	Sox1.mouse_HMG_2	12	1	+	4.546984782895716	9.219571886563974	CTGAATAACATTTCA
chr11	127190597	127190598	chr11:127190598:A:C	rs10466614	A	C	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr11	127217858	127217859	chr11:127217859:A:G	rs10893653	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.2725236431862945	-1.6735940445863542	CTGACATGCAGTCAT
chr11	127274477	127274478	chr11:127274478:T:A	rs141663949	T	A	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	127844453	127844454	chr11:127844454:A:G	rs61907473	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr11	127875377	127875378	chr11:127875378:G:A	rs11221094	G	A	G	Sox1.mouse_HMG_2	7	1	-	4.259732293935151	3.7987878402280453	AAGAATACCTTTCAA
chr11	127875399	127875400	chr11:127875400:G:T	rs11221095	G	T	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr11	128031678	128031679	chr11:128031679:G:T	rs78456095	G	T	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr11	128031685	128031686	chr11:128031686:A:T	rs146093749	A	T	A	Sox1.mouse_HMG_2	4	1	+	5.654584711053217	-1.166828058106856	CTGAATTGCAGACAT
chr11	128031714	128031715	chr11:128031715:G:A	chr11:128031715:G:A	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	128031715	128031716	chr11:128031716:C:A	rs988168747	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr11	128125978	128125979	chr11:128125979:A:G	rs73025190	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.020735448885495	-1.9253822388871529	GTGAAGAAGATTCAC
chr11	128210629	128210630	chr11:128210630:A:G	rs78421285	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr11	128210665	128210666	chr11:128210666:G:A	rs747163	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr11	128231835	128231836	chr11:128231836:A:T	rs79343753	A	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	128286418	128286419	chr11:128286419:A:G	rs12795702	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	128406015	128406016	chr11:128406016:G:T	rs75294966	G	T	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr11	128469910	128469911	chr11:128469911:G:T	rs7101705	G	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	128491749	128491750	chr11:128491750:T:C	rs535274593	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	128712661	128712662	chr11:128712662:T:C	rs665440	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr11	128754915	128754916	chr11:128754916:A:G	rs2155135	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr11	128874856	128874857	chr11:128874857:G:A	rs11603786	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr11	128957683	128957684	chr11:128957684:G:A	rs578577	G	A	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr11	129203019	129203020	chr11:129203020:C:G	rs2439801	C	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr11	129421733	129421734	chr11:129421734:C:A	rs2954148	C	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr11	129724125	129724126	chr11:129724126:G:A	rs504990	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr11	129992867	129992868	chr11:129992868:C:G	rs147131193	C	G	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr11	130000474	130000475	chr11:130000475:C:T	rs34362141	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	130019280	130019281	chr11:130019281:A:G	rs2323880	A	G	A	Sox1.mouse_HMG_2	0	1	-	6.666955313492094	6.932898507261527	TTGAATTTCCTTCAA
chr11	130225062	130225063	chr11:130225063:T:C	rs624885	T	C	C	Sox1.mouse_HMG_2	0	1	-	4.151509285429837	3.147273052794637	ATGACTAACATTTCT
chr11	130452568	130452569	chr11:130452569:G:A	rs11827019	G	A	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr11	130480027	130480028	chr11:130480028:A:C	rs140206628	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr11	130544485	130544486	chr11:130544486:C:G	rs1689215	C	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	130576466	130576467	chr11:130576467:C:T	rs12418439	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	130617081	130617082	chr11:130617082:G:A	rs3862592	G	A	A	Sox1.mouse_HMG_2	10	1	+	3.5768937420593	-0.5184503204958836	CTGACATCCAGTCAT
chr11	130738630	130738631	chr11:130738631:A:G	rs11820433	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr11	130811204	130811205	chr11:130811205:G:A	rs78545894	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr11	130813921	130813922	chr11:130813922:C:T	rs118107415	C	T	C	Sox1.mouse_HMG_2	1	1	-	6.416563234623659	6.721034413702235	TGGAATCACATTCAC
chr11	130828546	130828547	chr11:130828547:A:G	rs948997	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	130828551	130828552	chr11:130828552:C:T	rs948998	C	T	T	Sox1.mouse_HMG_2	4	1	+	3.2197497432478315	-1.2196019580453183	CTGGCTAACATTCTG
chr11	130882144	130882145	chr11:130882145:A:C	rs876641	A	C	C	Sox1.mouse_HMG_2	11	1	-	3.680734354991513	-3.2280204243237067	TTGAAAAAAATTCAG
chr11	130894553	130894554	chr11:130894554:G:T	rs11222379	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr11	130896673	130896674	chr11:130896674:T:C	rs7948812	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr11	131051856	131051857	chr11:131051857:G:A	rs1647960	G	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr11	131217891	131217892	chr11:131217892:T:C	rs11222521	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr11	131432707	131432708	chr11:131432708:C:T	rs79592197	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr11	131455972	131455973	chr11:131455973:T:C	rs10894394	T	C	T	Sox1.mouse_HMG_2	9	1	-	6.533570353296758	-0.3751844260184617	ATGAATAACATTTCT
chr11	131522117	131522118	chr11:131522118:A:T	rs388076	A	T	A	Sox1.mouse_HMG_2	1	1	-	6.582932155949759	1.938939848456526	CTGATTAGCAGTCAT
chr11	131522128	131522129	chr11:131522129:C:T	rs414864	C	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr11	131674246	131674247	chr11:131674247:G:T	rs114555904	G	T	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr11	131674279	131674280	chr11:131674280:G:A	rs181943215	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr11	131833634	131833635	chr11:131833635:T:C	rs1436257	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr11	131890387	131890388	chr11:131890388:C:T	rs115426511	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr11	132077085	132077086	chr11:132077086:A:C	rs1547895	A	C	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr11	132080859	132080860	chr11:132080860:G:A	rs6590614	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr11	132120001	132120002	chr11:132120002:G:A	rs3925046	G	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr11	132123379	132123380	chr11:132123380:G:A	rs80284468	G	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr11	132499488	132499489	chr11:132499489:C:G	rs2508934	C	G	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr11	132528237	132528238	chr11:132528238:A:G	rs2512705	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr11	132528265	132528266	chr11:132528266:C:G	rs2512706	C	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr11	132612477	132612478	chr11:132612478:G:T	rs140406831	G	T	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr11	132743120	132743121	chr11:132743121:T:A	rs117569826	T	A	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr11	132790777	132790778	chr11:132790778:A:C	rs2853044	A	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr11	132824798	132824799	chr11:132824799:A:G	rs7104976	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.415678636650897	-3.4930761426643233	AGGAATGACAATCAC
chr11	132859458	132859459	chr11:132859459:T:C	rs73041466	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr11	132951617	132951618	chr11:132951618:C:A	rs2336590	C	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr11	132994203	132994204	chr11:132994204:C:T	rs13377496	C	T	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr11	133063087	133063088	chr11:133063088:A:C	rs11603858	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr11	133835210	133835211	chr11:133835211:G:T	rs1302267084	G	T	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr11	133893334	133893335	chr11:133893335:A:C	rs1793681	A	C	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr11	133903008	133903009	chr11:133903009:C:A	rs117677995	C	A	c	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr11	133917049	133917050	chr11:133917050:A:C	rs3802922	A	C	C	Sox1.mouse_HMG_2	14	1	-	7.671426756014604	6.518358639226865	ATAAATCTCATTCAT
chr11	134034563	134034564	chr11:134034564:C:T	rs144773657	C	T	C	Sox1.mouse_HMG_2	13	1	+	2.1395868355105696	5.265939291481624	CTGAATACCACTCCG
chr11	134035438	134035439	chr11:134035439:T:C	rs687187	T	C	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr11	134037800	134037801	chr11:134037801:A:G	rs112727844	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.107978925642711	0.19922414632749014	GTGATTGACATTCAG
chr11	134037812	134037813	chr11:134037813:A:T	rs192023533	A	T	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr11	134252355	134252356	chr11:134252356:C:T	rs570113	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr11	134252401	134252402	chr11:134252402:A:C	rs12278812	A	C	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr11	134524550	134524551	chr11:134524551:T:C	rs74743777	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr11	134686685	134686686	chr11:134686686:C:T	rs3737494	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr11	134686727	134686728	chr11:134686728:T:C	rs3737493	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr11	134752055	134752056	chr11:134752056:C:G	rs79964977	C	G	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr11	134767486	134767487	chr11:134767487:T:C	rs7102831	T	C	C	Sox1.mouse_HMG_2	13	1	-	7.558484208863579	2.6123665210909315	CTGAAATCCATTCAG
chr11	134912972	134912973	chr11:134912973:C:T	rs78934032	C	T	C	Sox1.mouse_HMG_2	7	1	+	3.5277910065427966	3.0668465528356905	CTAAATGCCAATCAT
chr11	134994644	134994645	chr11:134994645:A:G	chr11:134994645:A:G	A	G	.	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr11	134994658	134994659	chr11:134994659:G:A	rs76048371	G	A	.	Sox1.mouse_HMG_2	14	1	-	5.187517894487537	6.062130237210273	CTGAATAGCATTGTC
chr12	49219	49220	chr12:49220:C:A	rs11061693	C	A	.	Sox1.mouse_HMG_2	2	1	-	4.7447423527253	-2.151951978897412	AAGAATTCCATTGAT
chr12	236602	236603	chr12:236603:T:C	rs7960083	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr12	352640	352641	chr12:352641:A:G	rs715228	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.041694065753927	-1.8670607135612918	ATGCCTAACATTCTT
chr12	484553	484554	chr12:484554:G:A	rs61916618	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	497493	497494	chr12:497494:G:A	rs12228043	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	607606	607607	chr12:607607:T:C	rs778089362	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr12	646085	646086	chr12:646086:A:G	rs10849390	A	G	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr12	950114	950115	chr12:950115:A:T	rs11571378	A	T	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	1093399	1093400	chr12:1093400:A:G	rs7316905	A	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr12	1273366	1273367	chr12:1273367:G:A	rs75781751	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	1293925	1293926	chr12:1293926:A:G	rs73029193	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	1429936	1429937	chr12:1429937:A:G	rs188928326	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.087902408735711	4.213290066012974	ATGAAAATCATTTAT
chr12	1582606	1582607	chr12:1582607:C:T	rs59731311	C	T	t	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	1705080	1705081	chr12:1705081:G:A	rs553337394	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr12	1830085	1830086	chr12:1830086:C:A	rs12301312	C	A	A	Sox1.mouse_HMG_2	2	1	-	7.0302041432685405	0.1335098116458272	ATGAATAGAATTCGT
chr12	1974761	1974762	chr12:1974762:G:A	rs10848600	G	A	G	Sox1.mouse_HMG_2	8	1	-	6.795880197043582	1.1514535066615954	ATGACTGACATGCAT
chr12	2073806	2073807	chr12:2073807:C:G	rs2283273	C	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr12	2289334	2289335	chr12:2289335:A:G	rs117036798	A	G	A	Sox1.mouse_HMG_2	13	1	+	7.375995529221477	2.4298778414488287	CTGAATTTCCTTCAC
chr12	2329474	2329475	chr12:2329475:A:G	rs1544503	A	G	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr12	2346948	2346949	chr12:2346949:G:T	rs2238070	G	T	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	2485385	2485386	chr12:2485386:C:G	rs887000	C	G	G	Sox1.mouse_HMG_2	7	1	-	2.524186726162416	2.8285568250354216	GGGGATGGCATTCAT
chr12	2492512	2492513	chr12:2492513:C:T	rs2239091	C	T	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	2581096	2581097	chr12:2581097:T:C	rs7299658	T	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	2648204	2648205	chr12:2648205:A:C	rs216036	A	C	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr12	2886021	2886022	chr12:2886022:G:C	rs10735010	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr12	2894963	2894964	chr12:2894964:A:G	rs10774074	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	3107253	3107254	chr12:3107254:G:A	chr12:3107254:G:A	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr12	3230263	3230264	chr12:3230264:C:T	rs3782813	C	T	C	Sox1.mouse_HMG_2	7	1	-	3.5896275329038363	4.290682352444913	TTCAAAAGCATTCAT
chr12	3231154	3231155	chr12:3231155:C:T	rs11062585	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr12	3238458	3238459	chr12:3238459:G:A	rs79901044	G	A	G	Sox1.mouse_HMG_2	14	1	-	9.150590560938193	10.025202903660928	CTCAATGACATTCAC
chr12	3343352	3343353	chr12:3343353:A:C	rs7968638	A	C	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	3530566	3530567	chr12:3530567:A:C	rs117420289	A	C	A	Sox1.mouse_HMG_2	7	1	-	6.073072597191078	6.2296469520251785	TTGAAAATCAGTCAT
chr12	3650730	3650731	chr12:3650731:G:C	rs17836203	G	C	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr12	3695286	3695287	chr12:3695287:G:T	rs11062765	G	T	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	3729109	3729110	chr12:3729110:G:A	rs241971	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	3731567	3731568	chr12:3731568:G:A	rs241965	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr12	3950911	3950912	chr12:3950912:C:T	rs554999422	C	T	C	Sox1.mouse_HMG_2	0	1	+	4.0434044426430455	3.777461248873613	CTGCATGCCATTCTC
chr12	4000067	4000068	chr12:4000068:T:C	rs4765761	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	4040968	4040969	chr12:4040969:T:C	rs11062980	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	4063959	4063960	chr12:4063960:A:G	rs11062987	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.546984782895716	-2.361769996419503	CTGAATAACATTTCA
chr12	4124862	4124863	chr12:4124863:G:A	rs12230013	G	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	4136746	4136747	chr12:4136747:T:A	rs117650926	T	A	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	4143324	4143325	chr12:4143325:C:T	rs139016175	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr12	4147228	4147229	chr12:4147229:C:T	rs75034361	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	4305405	4305406	chr12:4305406:A:G	rs145184984	A	G	A	Sox1.mouse_HMG_2	3	1	-	4.028760628788444	4.028760628788444	GTGTATTCCATTCTG
chr12	4557357	4557358	chr12:4557358:T:C	rs58545752	T	C	T	Sox1.mouse_HMG_2	14	1	+	8.434824781459028	7.560212438736292	CTGACTACTATTCAT
chr12	4572163	4572164	chr12:4572164:A:G	rs11063240	A	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	4591996	4591997	chr12:4591997:A:G	rs10492055	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	4771597	4771598	chr12:4771598:T:C	rs7976219	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	4849253	4849254	chr12:4849254:G:A	rs184372204	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	4857047	4857048	chr12:4857048:G:A	rs4631963	G	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	4939534	4939535	chr12:4939535:G:A	rs1990388	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	5407911	5407912	chr12:5407912:T:C	rs12371617	T	C	T	Sox1.mouse_HMG_2	13	1	-	6.779939329718599	1.8338216419459505	AGAAATAACATTCAG
chr12	5439134	5439135	chr12:5439135:C:T	rs9888338	C	T	c	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	5487645	5487646	chr12:5487646:T:C	rs4077470	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr12	5502929	5502930	chr12:5502930:T:A	rs11614714	T	A	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr12	5582833	5582834	chr12:5582834:G:A	rs10849298	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.404990949397088	0.7324038457288328	ATGAATAGCATCCTA
chr12	5648576	5648577	chr12:5648577:G:A	rs147939436	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr12	5648941	5648942	chr12:5648942:T:G	rs141768263	T	G	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr12	5741495	5741496	chr12:5741496:G:A	rs34940965	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	5751162	5751163	chr12:5751163:T:C	rs11063846	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	5791574	5791575	chr12:5791575:G:T	rs4930803	G	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr12	5920293	5920294	chr12:5920294:C:T	rs17786442	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr12	5987545	5987546	chr12:5987546:A:G	rs216881	A	G	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr12	6078471	6078472	chr12:6078472:G:A	rs58140598	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	6080348	6080349	chr12:6080349:C:A	rs113190143	C	A	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr12	6194082	6194083	chr12:6194083:A:G	rs797771	A	G	A	Sox1.mouse_HMG_2	0	1	+	7.351382634111452	6.347146401476248	AGGAATCACATTCAC
chr12	6231221	6231222	chr12:6231222:T:C	rs2268009	T	C	T	Sox1.mouse_HMG_2	10	1	-	3.857519118654008	7.952863181209192	ATGAGTAACAATCAT
chr12	6274153	6274154	chr12:6274154:T:C	rs58386010	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr12	6282488	6282489	chr12:6282489:C:T	rs565645915	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr12	6336121	6336122	chr12:6336122:C:G	rs141569020	C	G	C	Sox1.mouse_HMG_2	12	1	+	3.7811314471471764	-3.119317203319187	TTGAATCCCATCCAG
chr12	6431023	6431024	chr12:6431024:G:A	rs78889214	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	6768554	6768555	chr12:6768555:C:T	rs17887160	C	T	C	Sox1.mouse_HMG_2	14	1	+	7.3842813599668045	8.25889370268954	GAGACTTCCATTCAC
chr12	6889206	6889207	chr12:6889207:G:C	rs7955412	G	C	C	Sox1.mouse_HMG_2	14	1	+	9.720050810558536	9.99850658462354	GGGAATAGCATTCAG
chr12	6944796	6944797	chr12:6944797:C:T	rs73262868	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	7068567	7068568	chr12:7068568:T:C	rs11838267	T	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr12	7109644	7109645	chr12:7109645:C:T	rs3782923	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	7131887	7131888	chr12:7131888:A:C	rs10772466	A	C	G	Sox1.mouse_HMG_2	14	1	-	5.604530782648175	4.451462665860436	CTGATTTCCATTCTT
chr12	7304002	7304003	chr12:7304003:G:A	rs72653462	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	7497899	7497900	chr12:7497900:T:G	rs7358610	T	G	.	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	7497913	7497914	chr12:7497914:C:T	rs12315251	C	T	.	Sox1.mouse_HMG_2	7	1	+	4.519307054953018	4.058362601245911	AGGAGTTCCATTCAT
chr12	7497940	7497941	chr12:7497941:G:T	chr12:7497941:G:T	G	T	.	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	7571841	7571842	chr12:7571842:T:C	rs11054513	T	C	T	Sox1.mouse_HMG_2	3	1	-	7.733431279157242	0.8246764998420207	ATCACTAGCATTCAA
chr12	7816938	7816939	chr12:7816939:G:T	rs4564403	G	T	-	Sox1.mouse_HMG_2	8	1	-	4.139828328690749	-0.7096684868213495	ATCACTTGCAGTCAA
chr12	7928765	7928766	chr12:7928766:T:C	rs1060744	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr12	7989859	7989860	chr12:7989860:T:C	rs7313772	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	8077564	8077565	chr12:8077565:C:T	rs7132147	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	8077571	8077572	chr12:8077572:C:G	rs7132151	C	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr12	8288112	8288113	chr12:8288113:C:T	rs4519163	C	T	N	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr12	8320309	8320310	chr12:8320310:G:C	rs116112969	G	C	.	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr12	8449827	8449828	chr12:8449828:T:A	rs11045398	T	A	.	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	8658290	8658291	chr12:8658291:A:G	rs113302897	A	G	a	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	8871095	8871096	chr12:8871096:C:A	rs4883193	C	A	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr12	8877215	8877216	chr12:8877216:T:C	rs35800043	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	8916786	8916787	chr12:8916787:C:T	rs4882969	C	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr12	9128768	9128769	chr12:9128769:G:A	rs74060477	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr12	9245004	9245005	chr12:9245005:A:T	rs2377748	A	T	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	9379820	9379821	chr12:9379821:T:A	rs7310088	T	A	a	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	9454190	9454191	chr12:9454191:G:T	rs149943508	G	T	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	9605743	9605744	chr12:9605744:G:A	rs988711	G	A	A	Sox1.mouse_HMG_2	8	1	-	4.181121113863783	-1.4633055765182017	TTGAATGACAGTAAA
chr12	9605770	9605771	chr12:9605771:T:C	rs10844161	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr12	9670956	9670957	chr12:9670957:G:A	rs4763738	G	A	A	Sox1.mouse_HMG_2	2	1	+	4.973691996397154	0.3282894633809389	ATGAATAATGTTCAT
chr12	9706566	9706567	chr12:9706567:G:A	rs921875987	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	9725226	9725227	chr12:9725227:G:A	rs7307111	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	9934211	9934212	chr12:9934212:C:T	rs11610998	C	T	-	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	10070186	10070187	chr12:10070187:T:C	rs17734799	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.562104909011989	-1.346649870303231	ATGATTTCCAGTCAG
chr12	10099050	10099051	chr12:10099051:A:G	rs2306893	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr12	10122929	10122930	chr12:10122930:G:A	rs7136680	G	A	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	10122933	10122934	chr12:10122934:A:G	rs4764272	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	10223288	10223289	chr12:10223289:T:G	rs4326887	T	G	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr12	10226821	10226822	chr12:10226822:G:A	rs75533238	G	A	G	Sox1.mouse_HMG_2	2	1	+	7.11673455848337	2.471332025467153	GTGAATGGCAGTCTA
chr12	10244375	10244376	chr12:10244376:A:G	chr12:10244376:A:G	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr12	10363591	10363592	chr12:10363592:C:A	rs7313688	C	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr12	10501297	10501298	chr12:10501298:T:C	rs11053821	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.274228696748469	0.6302363892552372	TTGAATGTCATTTTG
chr12	10706017	10706018	chr12:10706018:G:A	rs79517088	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	10750614	10750615	chr12:10750615:T:C	rs73267972	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	11127134	11127135	chr12:11127135:G:A	rs201366803	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	11499087	11499088	chr12:11499088:T:C	rs17745082	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.8650727516989103	-3.04368202761631	CAGAAAGACATTCAT
chr12	11687669	11687670	chr12:11687670:T:C	chr12:11687670:T:C	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	11714935	11714936	chr12:11714936:G:A	rs150041122	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	11798787	11798788	chr12:11798788:G:C	rs751054699	G	C	G	Sox1.mouse_HMG_2	8	1	-	3.757996058771856	-1.9605386037638513	GTAAATACCACTCAC
chr12	11999144	11999145	chr12:11999145:A:G	rs4763748	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	11999163	11999164	chr12:11999164:G:A	rs4763749	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	12071783	12071784	chr12:12071784:G:A	rs1641716	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.713058476865048	1.0676559438488316	CTGTCTAGCATTCAG
chr12	12098776	12098777	chr12:12098777:C:T	rs2448031	C	T	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr12	12098826	12098827	chr12:12098827:C:G	rs1797646	C	G	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	12360062	12360063	chr12:12360063:G:A	rs10772555	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	12408520	12408521	chr12:12408521:C:T	rs2193269	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	12585797	12585798	chr12:12585798:T:C	rs73063478	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.731799360213624	-2.176955419101595	ATAACTTTCATTCTC
chr12	12660045	12660046	chr12:12660046:T:C	rs7977653	T	C	T	Sox1.mouse_HMG_2	13	1	+	4.274472897227683	1.1481204412566277	ATGCATACCAGTCTT
chr12	12819897	12819898	chr12:12819898:A:G	rs145022535	A	G	A	Sox1.mouse_HMG_2	14	1	+	7.790527681636704	7.955168929531652	CTGAATTACATCCAA
chr12	12819968	12819969	chr12:12819969:G:C	rs7966040	G	C	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr12	12986172	12986173	chr12:12986173:G:A	rs148027105	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr12	12986216	12986217	chr12:12986217:T:G	rs117599683	T	G	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	13050005	13050006	chr12:13050006:C:T	rs547360367	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr12	13208584	13208585	chr12:13208585:G:A	rs114030007	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	13472873	13472874	chr12:13472874:C:A	rs77597435	C	A	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	13569378	13569379	chr12:13569379:A:C	rs2270359	A	C	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	13588136	13588137	chr12:13588137:G:A	rs1805490	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	13817276	13817277	chr12:13817277:G:A	rs76273525	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	14044065	14044066	chr12:14044066:A:C	chr12:14044066:A:C	A	C	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	14235533	14235534	chr12:14235534:G:A	rs4763373	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr12	14394446	14394447	chr12:14394447:A:G	rs11835861	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	14420564	14420565	chr12:14420565:C:G	rs12301284	C	G	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	14420568	14420569	chr12:14420569:C:T	rs111305364	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	14952625	14952626	chr12:14952626:A:T	rs4763407	A	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr12	14973068	14973069	chr12:14973069:G:C	rs11056264	G	C	G	Sox1.mouse_HMG_2	1	1	+	4.516587083419594	4.82105826249817	AGGAACAACATTCAG
chr12	15044928	15044929	chr12:15044929:C:T	rs7300930	C	T	T	Sox1.mouse_HMG_2	7	1	+	6.6310531642627755	6.1701087105556685	GTAAATACAATTCAT
chr12	15093356	15093357	chr12:15093357:T:C	rs12812920	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	15117739	15117740	chr12:15117740:A:G	rs7296511	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr12	15117769	15117770	chr12:15117770:G:C	rs12300674	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	15151475	15151476	chr12:15151476:G:A	rs2193174	G	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr12	15186861	15186862	chr12:15186862:A:G	rs571527590	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	15352796	15352797	chr12:15352797:C:T	rs16910770	C	T	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr12	15362218	15362219	chr12:15362219:C:T	chr12:15362219:C:T	C	T	C	Sox1.mouse_HMG_2	2	1	-	7.355996942404405	2.7105944093881886	CTGAATGACTTTCAG
chr12	15526185	15526186	chr12:15526186:C:A	rs6488782	C	A	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	15758205	15758206	chr12:15758206:C:T	rs975648093	C	T	c	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr12	15789700	15789701	chr12:15789701:C:G	chr12:15789701:C:G	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	16198676	16198677	chr12:16198677:G:A	rs4598715	G	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	16940875	16940876	chr12:16940876:C:T	rs11057106	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.067560018158085	-0.5778425148581315	CCGAATTCCCTTCAT
chr12	17544335	17544336	chr12:17544336:G:A	rs148878331	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr12	17707812	17707813	chr12:17707813:T:C	rs4329735	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	18415141	18415142	chr12:18415142:T:C	rs7968533	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr12	18496374	18496375	chr12:18496375:G:A	rs2290044	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr12	18551073	18551074	chr12:18551074:A:G	rs12827361	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	18589483	18589484	chr12:18589484:T:C	rs147008464	T	C	T	Sox1.mouse_HMG_2	11	1	+	5.761524801770701	-1.1472299775445192	ATGAATTCCAGTGAC
chr12	18703773	18703774	chr12:18703774:C:T	rs754785787	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	18819669	18819670	chr12:18819670:G:A	rs3962579	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	19088222	19088223	chr12:19088223:T:C	rs883528	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr12	19088267	19088268	chr12:19088268:G:A	rs61227965	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr12	19641186	19641187	chr12:19641187:C:T	rs7313438	C	T	c	Sox1.mouse_HMG_2	0	1	+	5.076739417089119	4.810796223319686	CGCAATGACATTCAT
chr12	19718227	19718228	chr12:19718228:C:T	rs61918341	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	20161066	20161067	chr12:20161067:C:G	rs79047779	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	20199186	20199187	chr12:20199187:G:A	rs112286712	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr12	20385000	20385001	chr12:20385001:C:T	rs10770645	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	20546836	20546837	chr12:20546837:G:A	rs2311	G	A	G	Sox1.mouse_HMG_2	0	1	-	7.40590340866114	7.139960214891708	CTTAATTCCATTCAA
chr12	20806261	20806262	chr12:20806262:C:T	rs2417949	C	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	20822403	20822404	chr12:20822404:G:T	rs12811566	G	T	g	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	21092445	21092446	chr12:21092446:G:T	rs11045748	G	T	G	Sox1.mouse_HMG_2	12	1	-	3.2812427268092903	-3.619205923657074	ATGAACTCCATTCGG
chr12	21142677	21142678	chr12:21142678:G:A	rs4149022	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr12	21615006	21615007	chr12:21615007:C:G	rs153941	C	G	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	21615040	21615041	chr12:21615041:G:A	rs192210	G	A	g	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr12	21910802	21910803	chr12:21910803:T:G	rs4762719	T	G	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	22047036	22047037	chr12:22047037:T:G	chr12:22047037:T:G	T	G	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	22067179	22067180	chr12:22067180:T:C	rs2111352	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr12	22083420	22083421	chr12:22083421:G:C	rs11046295	G	C	G	Sox1.mouse_HMG_2	8	1	-	4.021642660207041	-1.6968920023286667	GTTAATTTCAGTCAG
chr12	22083429	22083430	chr12:22083430:T:G	rs183297602	T	G	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr12	22395906	22395907	chr12:22395907:G:A	rs73074659	G	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr12	22617830	22617831	chr12:22617831:T:C	rs114656002	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	22834528	22834529	chr12:22834529:A:C	rs2433644	A	C	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	22971505	22971506	chr12:22971506:A:T	rs4438093	A	T	A	Sox1.mouse_HMG_2	1	1	-	4.433824874296404	-0.2101674331968318	ATGAATGCCATCCTG
chr12	23055085	23055086	chr12:23055086:C:T	rs17763330	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	23722437	23722438	chr12:23722438:T:C	rs10771021	T	C	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	23859451	23859452	chr12:23859452:A:G	rs113782509	A	G	A	Sox1.mouse_HMG_2	10	1	-	8.050772214733174	1.2028306364528918	CTGACTAGAATTCAC
chr12	24037071	24037072	chr12:24037072:T:A	rs10842264	T	A	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	24185806	24185807	chr12:24185807:A:T	rs117223319	A	T	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	24280133	24280134	chr12:24280134:A:T	rs12579465	A	T	A	Sox1.mouse_HMG_2	10	1	-	4.30457710157842	-2.54336447670186	GTAAATAGGATTCAG
chr12	24535843	24535844	chr12:24535844:C:T	rs16927676	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr12	24596939	24596940	chr12:24596940:T:C	rs7298579	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.14034610395806	3.136109871322858	ATGATTTAAATTCAC
chr12	24601004	24601005	chr12:24601005:G:A	rs150280911	G	A	G	Sox1.mouse_HMG_2	14	1	-	8.01798114474383	8.892593487466565	AAGAATTCCAGTCAC
chr12	24636047	24636048	chr12:24636048:T:G	rs61911674	T	G	T	Sox1.mouse_HMG_2	7	1	-	5.4167727426186385	5.020088021950569	CTGACTTACATTAAA
chr12	24860651	24860652	chr12:24860652:T:A	rs73079568	T	A	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	24944671	24944672	chr12:24944672:C:T	rs2242399	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr12	25035596	25035597	chr12:25035597:G:A	rs859203	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr12	25273521	25273522	chr12:25273522:G:A	rs10842519	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	25415288	25415289	chr12:25415289:C:T	rs11048015	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.278286659575934	4.979341479117008	GTGAATGGCATCCTT
chr12	25490208	25490209	chr12:25490209:G:A	rs2340442	G	A	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	25495393	25495394	chr12:25495394:G:T	rs11048077	G	T	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr12	25612355	25612356	chr12:25612356:C:T	rs7956349	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr12	25701539	25701540	chr12:25701540:G:A	rs147932652	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr12	25708932	25708933	chr12:25708933:A:G	rs1381802	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr12	25718919	25718920	chr12:25718920:T:C	rs6487510	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	25760031	25760032	chr12:25760032:A:G	rs1462721	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	25769302	25769303	chr12:25769303:A:G	rs74741776	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.254114109990575	0.3453593306753541	CTGCATTGCATTCAG
chr12	25864689	25864690	chr12:25864690:G:C	rs10505984	G	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	25959991	25959992	chr12:25959992:T:C	rs7965449	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr12	25997759	25997760	chr12:25997760:A:G	rs74071351	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	26043492	26043493	chr12:26043493:G:A	rs2729651	G	A	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	26127780	26127781	chr12:26127781:G:C	rs10431216	G	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	26150944	26150945	chr12:26150945:A:G	rs191815175	A	G	A	Sox1.mouse_HMG_2	10	1	-	13.631455093394994	6.783513515114714	ATGAATAGCATTCTT
chr12	26829023	26829024	chr12:26829024:T:A	rs2881006	T	A	A	Sox1.mouse_HMG_2	3	1	-	6.051579255508792	-0.8571755238064277	AAGAATTACATTTAA
chr12	26837070	26837071	chr12:26837071:C:G	rs10842803	C	G	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr12	26944993	26944994	chr12:26944994:T:A	rs7296867	T	A	T	Sox1.mouse_HMG_2	13	1	-	3.860413655630725	0.6660501024724325	ATAAATTCCATACAC
chr12	27022642	27022643	chr12:27022643:G:T	rs77394744	G	T	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	27035311	27035312	chr12:27035312:G:C	rs61920363	G	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	27324772	27324773	chr12:27324773:C:T	rs189589246	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	27377844	27377845	chr12:27377845:G:A	rs11048994	G	A	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	27400807	27400808	chr12:27400808:A:C	rs1037920	A	C	A	Sox1.mouse_HMG_2	13	1	+	3.837199697198429	-2.4835163119309183	ATGATTAGAATTCAA
chr12	27433056	27433057	chr12:27433057:T:C	rs75526863	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.468429999190366	-1.4403247801248527	TTGACTAACATTTTC
chr12	27462440	27462441	chr12:27462441:A:G	rs142093538	A	G	A	Sox1.mouse_HMG_2	7	1	+	7.813470879831345	7.112416060290271	ATGAATAATATTCTC
chr12	27589697	27589698	chr12:27589698:A:G	rs7959652	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.35609547580234	-1.287896831690894	CTGAATAAGATGCAC
chr12	28040648	28040649	chr12:28040649:A:G	rs10843074	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr12	28177701	28177702	chr12:28177702:A:G	rs73267540	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.739198303997241	-2.08221446516283	CTGTATCTCATTCAT
chr12	28177725	28177726	chr12:28177726:C:T	rs6487665	C	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	28459780	28459781	chr12:28459781:C:T	rs11049628	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr12	28780750	28780751	chr12:28780751:C:G	rs789136	C	G	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	28852316	28852317	chr12:28852317:T:C	rs12366294	T	C	C	Sox1.mouse_HMG_2	9	1	-	2.6521091099263514	-4.256645669388869	CTGAATACCATGGAT
chr12	29033814	29033815	chr12:29033815:T:G	rs7962367	T	G	T	Sox1.mouse_HMG_2	11	1	+	4.257704520568679	-2.6510502587465408	TTAAATTACACTCAT
chr12	29211873	29211874	chr12:29211874:A:G	rs7954686	A	G	A	Sox1.mouse_HMG_2	14	1	-	9.733598922207962	8.858986579485228	AAGAATACCAGTCAT
chr12	29351622	29351623	chr12:29351623:A:G	rs10082956	A	G	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	29380353	29380354	chr12:29380354:T:C	rs78598629	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr12	29415344	29415345	chr12:29415345:T:C	rs1436315	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.97709719063607	3.536919768767431	TTCAATACCATTTAG
chr12	29767384	29767385	chr12:29767385:T:C	rs10843503	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr12	29826474	29826475	chr12:29826475:G:A	rs7136547	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	29971436	29971437	chr12:29971437:T:C	rs12817216	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	30088263	30088264	chr12:30088264:G:A	rs56067927	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	30111234	30111235	chr12:30111235:A:G	rs10219620	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	30111277	30111278	chr12:30111278:A:G	rs11833750	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	30243637	30243638	chr12:30243638:G:C	rs17520989	G	C	G	Sox1.mouse_HMG_2	7	1	-	2.2746606953749287	1.9702905965019224	GGGAATTCCATACAG
chr12	30302591	30302592	chr12:30302592:T:C	rs2703364	T	C	t	Sox1.mouse_HMG_2	1	1	+	3.008309087922845	-1.635683219570387	ATGAACAGCCTTCAT
chr12	30365173	30365174	chr12:30365174:G:A	rs16906306	G	A	G	Sox1.mouse_HMG_2	0	1	-	4.279118113689731	4.013174919920298	CTGAATCACATACAA
chr12	30725924	30725925	chr12:30725925:G:C	rs7304879	G	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	30952505	30952506	chr12:30952506:C:T	rs4931391	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr12	31223874	31223875	chr12:31223875:T:G	rs7304146	T	G	.	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	31232344	31232345	chr12:31232345:C:T	rs12831069	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.314701506033852	0.6692989730176347	CTGAATGACTTTCTT
chr12	31373724	31373725	chr12:31373725:T:C	rs4931485	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.864782730787504	-1.9566300383725688	GTGAAGCCCATTCAT
chr12	31586885	31586886	chr12:31586886:T:G	rs148389959	T	G	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr12	31600988	31600989	chr12:31600989:G:T	rs11051478	G	T	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr12	31641261	31641262	chr12:31641262:A:G	rs7313475	A	G	a	Sox1.mouse_HMG_2	1	1	-	4.121712304741833	-0.522280002751402	GTGAAGGTCATTCTT
chr12	31779307	31779308	chr12:31779308:C:T	rs78985139	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	31817340	31817341	chr12:31817341:T:C	rs2128626	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr12	31856687	31856688	chr12:31856688:T:G	rs11051630	T	G	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr12	31877564	31877565	chr12:31877565:C:T	rs56315906	C	T	c	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	31899487	31899488	chr12:31899488:C:A	rs1150975	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr12	31965287	31965288	chr12:31965288:G:A	rs193175329	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr12	31967457	31967458	chr12:31967458:A:T	rs11051704	A	T	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	32039540	32039541	chr12:32039541:C:T	rs1798579	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	32136830	32136831	chr12:32136831:T:C	rs1271151	T	C	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr12	32190754	32190755	chr12:32190755:A:G	rs7956602	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	32301307	32301308	chr12:32301308:C:T	rs11830407	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	32762245	32762246	chr12:32762246:G:A	rs73299909	G	A	A	Sox1.mouse_HMG_2	14	1	-	6.069065958057429	6.9436783007801655	CTGAATTACAGTCCC
chr12	32789668	32789669	chr12:32789669:A:G	rs7308383	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr12	32821826	32821827	chr12:32821827:A:T	rs144871177	A	T	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	32920569	32920570	chr12:32920570:G:A	rs10844385	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	33322623	33322624	chr12:33322624:T:A	rs10743816	T	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr12	33640986	33640987	chr12:33640987:T:C	rs12820852	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr12	33955917	33955918	chr12:33955918:G:A	rs12423422	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr12	33995217	33995218	chr12:33995218:G:C	chr12:33995218:G:C	G	C	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	34204987	34204988	chr12:34204988:C:G	rs7964272	C	G	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr12	38149536	38149537	chr12:38149537:T:C	rs11834360	T	C	t	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	38149549	38149550	chr12:38149550:C:T	rs6582502	C	T	c	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	38149571	38149572	chr12:38149572:C:T	rs11832882	C	T	c	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	38824027	38824028	chr12:38824028:C:A	rs10160990	C	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	38969755	38969756	chr12:38969756:T:G	rs7308278	T	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr12	38969771	38969772	chr12:38969772:T:C	rs2892451	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	39035981	39035982	chr12:39035982:A:T	rs61937603	A	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr12	39047596	39047597	chr12:39047597:A:T	rs10747664	A	T	T	Sox1.mouse_HMG_2	3	1	+	5.9764770858217515	-0.9322776934934676	GAGAATCCCATTCAG
chr12	39645375	39645376	chr12:39645376:A:G	rs12309999	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr12	39914170	39914171	chr12:39914171:G:A	rs10877772	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	40106745	40106746	chr12:40106746:G:C	rs542666842	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr12	40139534	40139535	chr12:40139535:C:A	rs2253736	C	A	a	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	40139548	40139549	chr12:40139549:A:G	rs2638224	A	G	A	Sox1.mouse_HMG_2	7	1	+	5.578513466244254	4.877458646703178	GTGAATTACATGCTT
chr12	40147824	40147825	chr12:40147825:A:G	rs11175332	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	40238296	40238297	chr12:40238297:T:G	rs10878246	T	G	T	Sox1.mouse_HMG_2	11	1	+	9.877884936569941	2.969130157254721	GTGAATTTCATTCGT
chr12	40238297	40238298	chr12:40238298:C:T	rs10878247	C	T	C	Sox1.mouse_HMG_2	12	1	+	9.877884936569941	5.205297832901686	GTGAATTTCATTCGT
chr12	40508894	40508895	chr12:40508895:A:G	rs73110091	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr12	40515119	40515120	chr12:40515120:T:A	rs11176994	T	A	.	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr12	40559092	40559093	chr12:40559093:G:A	rs11613339	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.145667160954711	-0.49875952942727364	GTGAATTACAGACAC
chr12	40792792	40792793	chr12:40792793:A:C	rs11178396	A	C	A	Sox1.mouse_HMG_2	11	1	-	5.658958010574022	-1.2497967687411975	ATGAATAACATTTCC
chr12	40792806	40792807	chr12:40792807:G:A	rs4768311	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	40917786	40917787	chr12:40917787:A:G	rs10784949	A	G	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr12	41148558	41148559	chr12:41148559:A:C	rs281834	A	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr12	41277813	41277814	chr12:41277814:A:G	rs12307881	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr12	41277845	41277846	chr12:41277846:G:A	rs12314080	G	A	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	41605970	41605971	chr12:41605971:C:T	rs366921	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr12	41615300	41615301	chr12:41615301:G:C	rs287035	G	C	G	Sox1.mouse_HMG_2	12	1	-	8.548156347511348	1.6477076970449858	GTGATTAACATTCAG
chr12	42091855	42091856	chr12:42091856:C:T	rs56142563	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr12	42156344	42156345	chr12:42156345:G:A	rs17592014	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr12	42266626	42266627	chr12:42266627:T:C	rs114771179	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	42343936	42343937	chr12:42343937:A:G	rs58826545	A	G	G	Sox1.mouse_HMG_2	13	1	-	4.200688631012533	1.0743361750414784	ATGACATACATTCTT
chr12	42612737	42612738	chr12:42612738:G:T	rs2406861	G	T	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr12	42736007	42736008	chr12:42736008:T:C	rs557645924	T	C	T	Sox1.mouse_HMG_2	10	1	-	6.626939160280613	10.722283222835795	ATGAATATCAATCTT
chr12	42820144	42820145	chr12:42820145:G:A	rs11181702	G	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr12	43011232	43011233	chr12:43011233:G:A	rs875886	G	A	A	Sox1.mouse_HMG_2	14	1	-	3.682013203491609	4.556625546214345	CTCCATAACATTCAC
chr12	43063745	43063746	chr12:43063746:G:A	rs1167163	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.910007029647373	5.914243262282575	GGAAATAGCATTCAA
chr12	43096113	43096114	chr12:43096114:A:C	rs1167144	A	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	43108217	43108218	chr12:43108218:G:A	rs1167100	G	A	G	Sox1.mouse_HMG_2	10	1	+	4.915998398973728	0.8206543364185442	ATCAATACCAGTCTC
chr12	43267040	43267041	chr12:43267041:G:A	rs1849778	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	43728389	43728390	chr12:43728390:G:A	rs79595727	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr12	43854056	43854057	chr12:43854057:G:T	rs113182538	G	T	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	44190815	44190816	chr12:44190816:T:C	rs189723951	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr12	44589877	44589878	chr12:44589878:T:C	rs10880653	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	44775302	44775303	chr12:44775303:A:C	rs17654244	A	C	A	Sox1.mouse_HMG_2	10	1	-	4.447620999192374	1.6950234834672768	CAGAATATCATGCAT
chr12	44833962	44833963	chr12:44833963:T:C	rs3847982	T	C	T	Sox1.mouse_HMG_2	9	1	-	7.711877754917602	0.8031229756023814	TAGACTAGCATTCAG
chr12	44898077	44898078	chr12:44898078:G:T	rs71459276	G	T	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	45234729	45234730	chr12:45234730:C:G	rs375756884	C	G	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr12	45256912	45256913	chr12:45256913:A:G	rs11182950	A	G	A	Sox1.mouse_HMG_2	8	1	-	3.907965889764564	9.552392580146552	ATGATTAATATTCAG
chr12	45410916	45410917	chr12:45410917:T:A	rs58640880	T	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr12	45410927	45410928	chr12:45410928:A:C	rs74486571	A	C	A	Sox1.mouse_HMG_2	9	1	+	7.026468800663452	0.11771402134823272	TTGAATTTCATTTTT
chr12	45459882	45459883	chr12:45459883:G:A	rs7315711	G	A	g	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	45459891	45459892	chr12:45459892:A:G	rs11183058	A	G	A	Sox1.mouse_HMG_2	11	1	-	5.780855578918553	-1.127899200396668	TAGAATAAAATTCAA
chr12	45500530	45500531	chr12:45500531:A:G	rs7968560	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr12	45966633	45966634	chr12:45966634:G:A	rs75091769	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr12	45966656	45966657	chr12:45966657:C:G	chr12:45966657:C:G	C	G	C	Sox1.mouse_HMG_2	11	1	+	7.603185162981028	7.603185162981028	GTGAATATCATCCAG
chr12	46071644	46071645	chr12:46071645:C:T	rs907524364	C	T	c	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr12	46390960	46390961	chr12:46390961:T:C	rs4768118	T	C	C	Sox1.mouse_HMG_2	9	1	-	3.1953805907509167	-3.713374188564304	AAGACTACCATCCAT
chr12	46462235	46462236	chr12:46462236:T:G	rs6582657	T	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr12	46629461	46629462	chr12:46629462:G:C	rs140469037	G	C	G	Sox1.mouse_HMG_2	14	1	+	3.8073291084906327	4.085784882555635	ATGAATAAGACTCAG
chr12	46724721	46724722	chr12:46724722:T:C	rs1030120	T	C	t	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr12	46724722	46724723	chr12:46724723:G:A	rs10785638	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	46785533	46785534	chr12:46785534:A:G	rs180431	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr12	46964606	46964607	chr12:46964607:C:T	rs78232639	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr12	46964628	46964629	chr12:46964629:G:A	rs2408643	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr12	46964629	46964630	chr12:46964630:C:A	rs78470592	C	A	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr12	47189559	47189560	chr12:47189560:C:T	rs4768143	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	47214351	47214352	chr12:47214352:G:C	rs2111903	G	C	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr12	47329128	47329129	chr12:47329129:C:T	rs855231	C	T	T	Sox1.mouse_HMG_2	6	1	-	5.048758312264419	6.488935734133059	TTGCATGACATTCTT
chr12	47350896	47350897	chr12:47350897:G:T	rs1730449	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	47418272	47418273	chr12:47418273:G:T	rs12311595	G	T	G	Sox1.mouse_HMG_2	7	1	-	7.468836450385973	7.865521171054043	ATGAATACCTGTCAT
chr12	47876812	47876813	chr12:47876813:T:C	rs6580642	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	48195198	48195199	chr12:48195199:A:G	rs11168451	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	48342655	48342656	chr12:48342656:T:C	rs1061986	T	C	t	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	48884250	48884251	chr12:48884251:G:A	rs116982128	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	49106614	49106615	chr12:49106615:G:A	rs10783304	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	49348305	49348306	chr12:49348306:A:G	rs74089062	A	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr12	49698875	49698876	chr12:49698876:C:A	rs188673188	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	49868332	49868333	chr12:49868333:A:C	chr12:49868333:A:C	A	C	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	49872069	49872070	chr12:49872070:C:T	rs836969	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	49933851	49933852	chr12:49933852:A:G	rs687048	A	G	G	Sox1.mouse_HMG_2	3	1	+	3.201636794759947	-3.7071179845552735	CCCACTTCCATTCAT
chr12	50023451	50023452	chr12:50023452:G:C	rs147506126	G	C	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	50059198	50059199	chr12:50059199:C:T	rs774092298	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	50274754	50274755	chr12:50274755:C:T	rs2111988	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr12	50506788	50506789	chr12:50506789:T:C	rs78128522	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	50614575	50614576	chr12:50614576:A:C	rs1402693	A	C	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	50838806	50838807	chr12:50838807:G:A	rs1583697	G	A	G	Sox1.mouse_HMG_2	2	1	+	7.406560475630801	2.7611579426145854	ATGAATTGCAGTTAG
chr12	51265223	51265224	chr12:51265224:G:A	rs772860981	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr12	51400258	51400259	chr12:51400259:A:G	rs7300192	A	G	G	Sox1.mouse_HMG_2	1	1	-	3.8002065988656697	-0.843785708627565	TTACATTCCATTCAT
chr12	51695472	51695473	chr12:51695473:A:G	rs4761830	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr12	52071067	52071068	chr12:52071068:A:C	rs113629254	A	C	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	52169934	52169935	chr12:52169935:C:A	rs6580861	C	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr12	52279827	52279828	chr12:52279828:C:T	rs116425546	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.571978874675435	0.9275521842934474	GAGAATTCCATTCTC
chr12	52365718	52365719	chr12:52365719:T:C	rs11170101	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	52391155	52391156	chr12:52391156:C:T	rs143404571	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr12	52890382	52890383	chr12:52890383:A:G	rs12422322	A	G	a	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr12	52951045	52951046	chr12:52951046:C:T	rs2070876	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	53035811	53035812	chr12:53035812:C:G	rs76096382	C	G	C	Sox1.mouse_HMG_2	3	1	+	7.984664678174781	7.984664678174781	TTGCATTTCATTCAT
chr12	53048914	53048915	chr12:53048915:C:G	rs376161912	C	G	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr12	53279581	53279582	chr12:53279582:T:C	rs139120998	T	C	t	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr12	53299992	53299993	chr12:53299993:C:A	rs138701588	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr12	53320478	53320479	chr12:53320479:T:C	rs142932140	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr12	53370794	53370795	chr12:53370795:T:G	rs112007888	T	G	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr12	53508916	53508917	chr12:53508917:T:A	rs73313245	T	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	53728288	53728289	chr12:53728289:G:A	rs17102221	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	53733593	53733594	chr12:53733594:C:T	rs59067455	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr12	53733594	53733595	chr12:53733595:A:G	rs59029921	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	54003613	54003614	chr12:54003614:C:T	rs180979240	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr12	54013505	54013506	chr12:54013506:C:T	rs11170785	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr12	54013512	54013513	chr12:54013513:A:G	rs4759317	A	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr12	54054321	54054322	chr12:54054322:A:G	rs75256744	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	54258869	54258870	chr12:54258870:G:A	rs10219739	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	54603587	54603588	chr12:54603588:T:C	rs1157485	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	54622156	54622157	chr12:54622157:G:A	rs147123706	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	54702473	54702474	chr12:54702474:C:A	rs141015277	C	A	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	54892038	54892039	chr12:54892039:T:C	rs75114927	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.9761331393675	-2.9326216399477203	CTGACTACCTTTCTT
chr12	54958348	54958349	chr12:54958349:C:T	rs11171194	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr12	54967633	54967634	chr12:54967634:G:A	rs35798949	G	A	G	Sox1.mouse_HMG_2	4	1	-	6.3307217419375466	1.8913700406443974	CTCACTAACAGTCAT
chr12	55479938	55479939	chr12:55479939:C:T	rs116914886	C	T	-	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr12	55704587	55704588	chr12:55704588:G:A	rs57535435	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr12	55724932	55724933	chr12:55724933:A:G	rs141649028	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.026105614258988	-1.617886693234244	ATGAAGACCATTCCC
chr12	55996650	55996651	chr12:55996651:T:G	chr12:55996651:T:G	T	G	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	56043132	56043133	chr12:56043133:G:A	rs71459335	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr12	56360234	56360235	chr12:56360235:A:G	rs986770974	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	56360242	56360243	chr12:56360243:A:G	rs531461337	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	56644803	56644804	chr12:56644804:T:C	chr12:56644804:T:C	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	56644845	56644846	chr12:56644846:A:G	chr12:56644846:A:G	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	56882498	56882499	chr12:56882499:T:C	rs6581113	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr12	56882505	56882506	chr12:56882506:A:T	rs6581114	A	T	A	Sox1.mouse_HMG_2	3	1	+	8.050772214733174	1.142017435417952	CTGACTAGAATTCAC
chr12	56884725	56884726	chr12:56884726:T:C	chr12:56884726:T:C	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	57779145	57779146	chr12:57779146:C:T	rs10877019	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr12	57936226	57936227	chr12:57936227:A:G	rs961551044	A	G	.	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr12	57936242	57936243	chr12:57936243:C:G	rs974108657	C	G	.	Sox1.mouse_HMG_2	14	1	+	2.10310941220932	1.8246536381443175	CTGCCTGCCAGTCAC
chr12	58069696	58069697	chr12:58069697:G:T	chr12:58069697:G:T	G	T	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	58187081	58187082	chr12:58187082:T:A	rs12828181	T	A	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	58187082	58187083	chr12:58187083:C:A	rs12826759	C	A	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	58283515	58283516	chr12:58283516:C:T	rs12822443	C	T	C	Sox1.mouse_HMG_2	0	1	+	3.1643528792603286	2.898409685490896	CTGAATTCCTTTTAC
chr12	58367552	58367553	chr12:58367553:C:T	rs1174596	C	T	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	58455492	58455493	chr12:58455493:C:T	rs3913080	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	58479115	58479116	chr12:58479116:T:C	rs10783899	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	58502893	58502894	chr12:58502894:G:A	rs11172636	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	58529433	58529434	chr12:58529434:A:G	rs11172649	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr12	58529441	58529442	chr12:58529442:T:C	chr12:58529442:T:C	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr12	58851122	58851123	chr12:58851123:T:C	rs17121582	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr12	58892891	58892892	chr12:58892892:T:C	rs17121690	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.447620999192374	3.0074435773237345	CAGAATATCTTTCAT
chr12	58917353	58917354	chr12:58917354:C:T	chr12:58917354:C:T	C	T	C	Sox1.mouse_HMG_2	12	1	+	7.700521809518809	3.0279347058505532	CTAAATAACATTCTA
chr12	59142547	59142548	chr12:59142548:A:G	rs1500023	A	G	A	Sox1.mouse_HMG_2	14	1	+	5.994401193880736	6.159042441775684	TTAAATGACATTCTA
chr12	59330438	59330439	chr12:59330439:G:T	rs143065561	G	T	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr12	59536268	59536269	chr12:59536269:G:A	rs402342	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr12	59572214	59572215	chr12:59572215:C:T	rs2671853	C	T	T	Sox1.mouse_HMG_2	8	1	+	3.3247453037630423	-2.3196813866189436	ATGACCTACAGTCAA
chr12	59596168	59596169	chr12:59596169:G:A	chr12:59596169:G:A	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr12	59603960	59603961	chr12:59603961:A:C	rs17122680	A	C	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr12	59675697	59675698	chr12:59675698:T:G	rs79205592	T	G	G	Sox1.mouse_HMG_2	11	1	+	7.174344943190871	0.2655901638756505	ATAAATATAATTCAT
chr12	60153357	60153358	chr12:60153358:T:C	rs112281161	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	60849769	60849770	chr12:60849770:T:G	rs6581348	T	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	61188980	61188981	chr12:61188981:G:A	rs1546411	G	A	G	Sox1.mouse_HMG_2	6	1	+	4.551336829061412	5.9915142509300505	CTGACCGGCATTCAC
chr12	61189007	61189008	chr12:61189008:C:G	rs12423993	C	G	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr12	61365138	61365139	chr12:61365139:G:A	rs76362141	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	61758869	61758870	chr12:61758870:T:C	rs10877739	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	62103088	62103089	chr12:62103089:T:A	rs80334311	T	A	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr12	62189848	62189849	chr12:62189849:C:T	rs1920091	C	T	T	Sox1.mouse_HMG_2	10	1	-	7.528441894861703	3.4330978323065198	ATGAATTTCAGTTAC
chr12	62463402	62463403	chr12:62463403:C:T	rs10747964	C	T	t	Sox1.mouse_HMG_2	14	1	+	10.466208561595922	11.340820904318656	AAGAATTGCATTCAC
chr12	62695732	62695733	chr12:62695733:T:C	rs11174605	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	62958060	62958061	chr12:62958061:A:G	rs2464118	A	G	A	Sox1.mouse_HMG_2	4	1	+	6.028300914877047	-0.7931118542830242	CTAAATGCCATTCTG
chr12	63103700	63103701	chr12:63103701:G:A	rs139168997	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	63107545	63107546	chr12:63107546:T:C	rs983452	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	63424077	63424078	chr12:63424078:C:T	rs1454738368	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	63968938	63968939	chr12:63968939:C:T	rs11175219	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	64008729	64008730	chr12:64008730:G:A	rs3930087	G	A	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	64082869	64082870	chr12:64082870:T:C	rs11175255	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.3394328822044876	-4.508508696075792	CTGGATAGCTTTCAT
chr12	64299584	64299585	chr12:64299585:G:A	rs1347576	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	64369004	64369005	chr12:64369005:A:G	rs55999447	A	G	A	Sox1.mouse_HMG_2	5	1	-	6.910871678481342	0.0021168991661225656	TTGATTTGCATTCAA
chr12	64655437	64655438	chr12:64655438:G:A	rs12815802	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr12	64655471	64655472	chr12:64655472:T:A	rs1716518	T	A	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	64670293	64670294	chr12:64670294:G:A	rs529925476	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.068056685681139	4.769111505222215	CTGAATTGCATTGTG
chr12	64930954	64930955	chr12:64930955:G:C	rs3910533	G	C	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr12	64990925	64990926	chr12:64990926:G:A	rs12425149	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	65335570	65335571	chr12:65335571:G:A	rs7301781	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	65443789	65443790	chr12:65443790:C:G	rs56160102	C	G	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	65520126	65520127	chr12:65520127:T:C	rs10878294	T	C	t	Sox1.mouse_HMG_2	6	1	-	5.068543294911663	3.628365873043025	GTTACTATCATTCAA
chr12	65530308	65530309	chr12:65530309:C:T	rs12301391	C	T	T	Sox1.mouse_HMG_2	10	1	-	4.472734111215083	0.3773900486598988	AGGAATTACAGTCTA
chr12	65699677	65699678	chr12:65699678:C:T	rs76178465	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr12	65728344	65728345	chr12:65728345:G:C	rs148859520	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr12	65779765	65779766	chr12:65779766:C:T	rs2260622	C	T	T	Sox1.mouse_HMG_2	0	1	-	6.597538480344683	7.601774712979883	GTGAAATTCATTCAA
chr12	66197924	66197925	chr12:66197925:A:G	rs554999454	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr12	66279126	66279127	chr12:66279127:G:A	rs1168324	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr12	66644359	66644360	chr12:66644360:T:C	rs10878484	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	66647281	66647282	chr12:66647282:A:G	rs1231067356	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	67018405	67018406	chr12:67018406:C:A	rs1252290	C	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr12	67019028	67019029	chr12:67019029:G:C	rs80329281	G	C	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr12	67388078	67388079	chr12:67388079:T:C	rs7955266	T	C	C	Sox1.mouse_HMG_2	5	1	+	7.312110558563423	0.4033557792482022	TTAAATGACATTCTT
chr12	67394647	67394648	chr12:67394648:G:A	rs1317054404	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr12	67748175	67748176	chr12:67748176:C:T	rs372519188	C	T	C	Sox1.mouse_HMG_2	8	1	+	2.643802981077493	-3.000623709304492	CTGCATACCTTTCAT
chr12	67854651	67854652	chr12:67854652:G:A	rs7295446	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	68240114	68240115	chr12:68240115:T:C	rs73332770	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr12	68240123	68240124	chr12:68240124:T:C	rs192378081	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr12	68349160	68349161	chr12:68349161:G:A	rs7134316	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	68612733	68612734	chr12:68612734:T:C	rs117165587	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr12	68743671	68743672	chr12:68743672:T:C	rs35397463	T	C	T	Sox1.mouse_HMG_2	1	1	-	4.401283203266678	4.096812024188103	TAGAATCACATTCTT
chr12	68777543	68777544	chr12:68777544:T:C	rs77612024	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr12	68804850	68804851	chr12:68804851:C:T	rs1144941	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.059587221212179	-0.5858153118040378	TTGAATCCCATGCAC
chr12	68867263	68867264	chr12:68867264:C:T	rs1144949	C	T	C	Sox1.mouse_HMG_2	10	1	-	4.078999045661944	-0.016345016893239583	TTGAACTTCAGTCAG
chr12	68892536	68892537	chr12:68892537:G:T	rs7959458	G	T	G	Sox1.mouse_HMG_2	12	1	-	12.45717200828532	5.5567233578189565	CTGACTAGCATTCAA
chr12	68959288	68959289	chr12:68959289:C:A	rs4351896	C	A	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr12	69068687	69068688	chr12:69068688:T:G	chr12:69068688:T:G	T	G	t	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr12	69338245	69338246	chr12:69338246:A:T	rs78483473	A	T	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	69398207	69398208	chr12:69398208:G:A	chr12:69398208:G:A	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	69398244	69398245	chr12:69398245:A:G	rs315143	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	69435798	69435799	chr12:69435799:G:C	rs13377945	G	C	T	Sox1.mouse_HMG_2	14	1	-	4.572512490231389	4.294056716166387	CTGAGTGCCAGTCAC
chr12	69948399	69948400	chr12:69948400:G:C	rs11177989	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr12	70003247	70003248	chr12:70003248:T:C	rs1565723	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.4563972429084013	-3.3650155262516734	ATGAATTACTTTCCT
chr12	70228643	70228644	chr12:70228644:T:C	rs17226129	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr12	70661165	70661166	chr12:70661166:C:A	rs75405399	C	A	C	Sox1.mouse_HMG_2	0	1	+	3.4397932348558196	4.10866944057418	CTGAATGCCTTTTAT
chr12	70717826	70717827	chr12:70717827:A:G	rs11178377	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr12	70815760	70815761	chr12:70815761:T:C	rs2458438	T	C	C	Sox1.mouse_HMG_2	1	1	+	9.083319257662643	4.439326950169411	CTCACTAACATTCAT
chr12	70815770	70815771	chr12:70815771:T:G	rs2470375	T	G	T	Sox1.mouse_HMG_2	11	1	+	9.083319257662643	2.174564478347423	CTCACTAACATTCAT
chr12	70853014	70853015	chr12:70853015:G:A	rs79531663	G	A	G	Sox1.mouse_HMG_2	9	1	+	6.964760555521414	13.873515334836634	ATGACTACCGTTCAC
chr12	70853034	70853035	chr12:70853035:C:T	rs10879204	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr12	70917989	70917990	chr12:70917990:A:G	rs10879218	A	G	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	71061393	71061394	chr12:71061394:C:T	rs1512989	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr12	71199390	71199391	chr12:71199391:C:T	rs1495379	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr12	71214746	71214747	chr12:71214747:C:T	rs1390201	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr12	71511009	71511010	chr12:71511010:A:G	rs10748178	A	G	A	Sox1.mouse_HMG_2	14	1	-	8.445609131881888	7.570996789159151	TTGAATTCCATACAT
chr12	71543456	71543457	chr12:71543457:A:T	rs34883072	A	T	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr12	72227414	72227415	chr12:72227415:C:A	rs2367895	C	A	C	Sox1.mouse_HMG_2	2	1	-	3.895347791608232	-3.0013465400144814	GTGAATAAGTTTCAT
chr12	72261335	72261336	chr12:72261336:A:G	rs7135786	A	G	G	Sox1.mouse_HMG_2	8	1	-	4.304815790678798	9.949242481060784	CTGAATAATGTTCAT
chr12	72806576	72806577	chr12:72806577:C:T	rs10879496	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	73025331	73025332	chr12:73025332:G:A	rs995163	G	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	73653643	73653644	chr12:73653644:G:T	rs2586918	G	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr12	74286064	74286065	chr12:74286065:A:G	rs476953	A	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	74621128	74621129	chr12:74621129:G:T	rs7961062	G	T	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr12	74752415	74752416	chr12:74752416:G:A	rs10879833	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	75487237	75487238	chr12:75487238:C:T	rs12422952	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	75623836	75623837	chr12:75623837:C:T	rs146066126	C	T	C	Sox1.mouse_HMG_2	7	1	+	11.220062739415201	10.759118285708098	TTGACTGCCATTCAG
chr12	75632779	75632780	chr12:75632780:T:A	rs79550925	T	A	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	75632784	75632785	chr12:75632785:A:T	rs7305673	A	T	A	Sox1.mouse_HMG_2	10	1	-	6.72042457795768	-0.1275170003226015	CTAAATGTCATTCTT
chr12	75716568	75716569	chr12:75716569:C:G	rs12422374	C	G	C	Sox1.mouse_HMG_2	8	1	+	2.929471033096113	-2.7890636294395947	GTGACAACCAGTCAG
chr12	75727469	75727470	chr12:75727470:G:C	rs75509245	G	C	g	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr12	75821547	75821548	chr12:75821548:C:T	rs78539424	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	75848772	75848773	chr12:75848773:T:C	rs1275616	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr12	75848801	75848802	chr12:75848802:A:C	rs7295719	A	C	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	75878179	75878180	chr12:75878180:A:G	rs140170152	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr12	75878194	75878195	chr12:75878195:G:A	rs1732754	G	A	A	Sox1.mouse_HMG_2	8	1	-	3.905890813670657	-1.738535876711329	TGTAATTACATTCAT
chr12	76009924	76009925	chr12:76009925:T:C	rs4831958	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr12	76152318	76152319	chr12:76152319:C:A	rs74659986	C	A	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	76186908	76186909	chr12:76186909:C:G	rs7964159	C	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	76266372	76266373	chr12:76266373:A:C	rs73131576	A	C	a	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr12	76266418	76266419	chr12:76266419:T:C	rs1517730	T	C	t	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	76348936	76348937	chr12:76348937:G:A	rs183457508	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr12	76688506	76688507	chr12:76688507:A:G	rs10862354	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	76804823	76804824	chr12:76804824:G:A	rs7956259	G	A	A	Sox1.mouse_HMG_2	2	1	-	4.551421243335668	3.0473438465593934	TTCAATAGCAGTCTT
chr12	77066331	77066332	chr12:77066332:T:C	rs11613450	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr12	77066342	77066343	chr12:77066343:A:G	rs923578462	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.1436261895333235	-2.7651285897818982	GGGACTAGCATTCTG
chr12	77066348	77066349	chr12:77066349:A:C	rs11116872	A	C	A	Sox1.mouse_HMG_2	9	1	+	4.1436261895333235	-2.7651285897818965	GGGACTAGCATTCTG
chr12	77152249	77152250	chr12:77152250:T:G	rs771653	T	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr12	77152278	77152279	chr12:77152279:C:T	rs771651	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr12	77161546	77161547	chr12:77161547:A:G	rs12823431	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr12	77592004	77592005	chr12:77592005:T:A	rs77349708	T	A	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	77616807	77616808	chr12:77616808:A:C	rs9805007	A	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr12	77943653	77943654	chr12:77943654:A:G	rs79405087	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr12	78060264	78060265	chr12:78060265:C:G	rs76812446	C	G	C	Sox1.mouse_HMG_2	0	1	+	4.703060944880614	4.367700917963771	CTGTATACAATTCAT
chr12	78097956	78097957	chr12:78097957:T:C	rs2611265	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	78098000	78098001	chr12:78098001:G:A	rs73143963	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	78148813	78148814	chr12:78148814:T:G	rs444864	T	G	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr12	78290861	78290862	chr12:78290862:C:T	rs7956450	C	T	T	Sox1.mouse_HMG_2	12	1	+	2.5562957906761823	-2.1162913129920726	ATGAAAAACATACAG
chr12	78290879	78290880	chr12:78290880:G:A	rs892149927	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	78397559	78397560	chr12:78397560:T:C	rs1510885	T	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	78541035	78541036	chr12:78541036:G:A	rs12371969	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	78586580	78586581	chr12:78586581:A:G	rs1717389	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr12	78698187	78698188	chr12:78698188:T:C	rs117014954	T	C	T	Sox1.mouse_HMG_2	3	1	-	5.534607783833139	-1.3741469954820813	GCAAATTTCATTCAT
chr12	78797887	78797888	chr12:78797888:C:T	rs7135993	C	T	T	Sox1.mouse_HMG_2	7	1	-	12.313745728712309	13.014800548253383	ATGAATAGCATTCTA
chr12	79244941	79244942	chr12:79244942:T:C	rs150171861	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	79252524	79252525	chr12:79252525:A:G	rs1245825	A	G	G	Sox1.mouse_HMG_2	10	1	-	7.6398929652488015	0.7919513869685207	ATCACTTCCATTCAC
chr12	79769199	79769200	chr12:79769200:A:T	rs9308325	A	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	80019986	80019987	chr12:80019987:A:G	rs17006301	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	80236044	80236045	chr12:80236045:A:G	rs1451104	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.358434457800811	-1.48950712047947	TTCACTGGCATTCAA
chr12	80881438	80881439	chr12:80881439:C:T	rs78148991	C	T	C	Sox1.mouse_HMG_2	1	1	-	3.1927755464370704	3.4972467255156467	TGGCATTGCATTCAT
chr12	81451029	81451030	chr12:81451030:T:C	rs74104281	T	C	T	Sox1.mouse_HMG_2	10	1	-	4.768654628736363	8.863998691291545	ATGAATTCCAATTAT
chr12	81595695	81595696	chr12:81595696:A:T	rs11114926	A	T	A	Sox1.mouse_HMG_2	3	1	+	3.7987878402280453	-3.1099669390871747	AAGAATATCCTTCAA
chr12	81626529	81626530	chr12:81626530:T:C	rs10862331	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	82124979	82124980	chr12:82124980:T:C	rs115565057	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	82326414	82326415	chr12:82326415:C:T	rs4319577	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	83004013	83004014	chr12:83004014:C:T	rs1796205	C	T	T	Sox1.mouse_HMG_2	8	1	+	4.361028806625045	-1.2833978837569409	GTGAATTGCAGTTTT
chr12	83019850	83019851	chr12:83019851:C:T	rs143127751	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr12	83019859	83019860	chr12:83019860:G:A	rs148562217	G	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	83068163	83068164	chr12:83068164:T:C	rs10778938	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	83090785	83090786	chr12:83090786:T:C	rs10862580	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.3841278880845542	-1.259864419408679	CTGAATTAAGTTCAC
chr12	83127948	83127949	chr12:83127949:T:A	rs74106071	T	A	T	Sox1.mouse_HMG_2	13	1	-	2.673351656059051	-0.5210118970992413	CTGACTGGCAGCCAT
chr12	83476465	83476466	chr12:83476466:T:C	rs3112104	T	C	C	Sox1.mouse_HMG_2	1	1	+	5.430460647714122	0.7864683402208877	GTGAATAGGATTTAT
chr12	83657295	83657296	chr12:83657296:G:A	rs139332641	G	A	G	Sox1.mouse_HMG_2	14	1	+	2.4754583551437	2.3108171072487522	CTGAATAACATACCG
chr12	83705258	83705259	chr12:83705259:T:C	rs6539778	T	C	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr12	83728440	83728441	chr12:83728441:C:T	rs1903302	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	84082406	84082407	chr12:84082407:C:A	rs11116194	C	A	C	Sox1.mouse_HMG_2	14	1	-	5.742566531903378	6.895634648691117	TTGAATATTATTCTG
chr12	84498840	84498841	chr12:84498841:A:C	rs2468284	A	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	84526349	84526350	chr12:84526350:A:G	rs1903189	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	84582865	84582866	chr12:84582866:A:G	rs12312284	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr12	85036932	85036933	chr12:85036933:A:G	rs75142967	A	G	A	Sox1.mouse_HMG_2	14	1	-	3.9413998489046524	3.0667875061819165	ATGACGTGCAGTCAT
chr12	85383323	85383324	chr12:85383324:A:G	rs34488015	A	G	G	Sox1.mouse_HMG_2	9	1	+	3.895347791608231	-3.0134069877069884	GTGAAGAAGATTCAT
chr12	85424805	85424806	chr12:85424806:C:T	rs572929391	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	85424831	85424832	chr12:85424832:G:A	rs114792562	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	85641744	85641745	chr12:85641745:G:A	rs11835161	G	A	A	Sox1.mouse_HMG_2	7	1	-	8.023839356758376	7.562894903051269	TGGACTTCCATTCAT
chr12	86196528	86196529	chr12:86196529:T:C	rs839162	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	86234489	86234490	chr12:86234490:C:T	rs7302169	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	87112867	87112868	chr12:87112868:T:C	rs73197878	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr12	87113132	87113133	chr12:87113133:G:A	rs2053091	G	A	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	87247848	87247849	chr12:87247849:C:T	chr12:87247849:C:T	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	87284149	87284150	chr12:87284150:A:T	rs550132250	A	T	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	87793054	87793055	chr12:87793055:A:C	rs2253566	A	C	.	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	87836055	87836056	chr12:87836056:A:G	rs10777065	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	88538468	88538469	chr12:88538469:C:T	rs11104938	C	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	89038610	89038611	chr12:89038611:G:T	rs117177432	G	T	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	89039219	89039220	chr12:89039220:C:T	rs79420168	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	89039237	89039238	chr12:89039238:G:A	rs111296242	G	A	G	Sox1.mouse_HMG_2	0	1	-	3.8824333930216612	3.6164901992522287	CTGAATCCCATGCAA
chr12	89350158	89350159	chr12:89350159:G:C	rs704077	G	C	G	Sox1.mouse_HMG_2	3	1	+	8.796174364273046	8.796174364273046	CTGGATAACATTCAG
chr12	89352282	89352283	chr12:89352283:A:G	rs985712229	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	89352303	89352304	chr12:89352304:T:G	rs1176535533	T	G	T	Sox1.mouse_HMG_2	13	1	-	7.110052335452044	0.7893363263226975	TTGGATTTCATTCAC
chr12	89357307	89357308	chr12:89357308:C:T	rs1689411	C	T	T	Sox1.mouse_HMG_2	8	1	+	3.4893865516579896	-2.155040138723996	ATGACTTACAGGCAG
chr12	89386159	89386160	chr12:89386160:T:A	rs7135819	T	A	T	Sox1.mouse_HMG_2	11	1	+	5.87144761952491	-1.0373071597903096	ATGAAATACAGTCAG
chr12	89390138	89390139	chr12:89390139:G:A	rs76526049	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr12	89454042	89454043	chr12:89454043:T:G	rs186385648	T	G	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr12	89495012	89495013	chr12:89495013:T:C	rs2052828	T	C	t	Sox1.mouse_HMG_2	13	1	-	4.881855200744311	-0.0642624870283369	CTGTATGACAGTCAC
chr12	89537415	89537416	chr12:89537416:T:G	rs1492913	T	G	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr12	89621704	89621705	chr12:89621705:T:C	rs375942519	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	89636370	89636371	chr12:89636371:C:G	rs73196675	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr12	89668884	89668885	chr12:89668885:A:G	rs17782841	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	89678378	89678379	chr12:89678379:G:T	rs12310846	G	T	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	89894322	89894323	chr12:89894323:C:T	rs17017294	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	89909789	89909790	chr12:89909790:G:C	rs7957657	G	C	G	Sox1.mouse_HMG_2	7	1	-	2.423825625271563	2.1194555263985566	CTGACTTCCAGGCAG
chr12	90360549	90360550	chr12:90360550:T:G	rs1897382	T	G	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	90368362	90368363	chr12:90368363:C:T	rs826210	C	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr12	90450012	90450013	chr12:90450013:T:C	rs704135	T	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr12	91343467	91343468	chr12:91343468:C:G	rs7295998	C	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	91349699	91349700	chr12:91349700:T:C	rs17193599	T	C	c	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr12	91356203	91356204	chr12:91356204:A:G	rs1389058	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	91586596	91586597	chr12:91586597:T:C	rs10777317	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.602603610307859	-1.3061511690073617	TTGACTTTCTTTCAT
chr12	91609330	91609331	chr12:91609331:G:A	rs2130401	G	A	A	Sox1.mouse_HMG_2	0	1	-	5.897249753527315	5.631306559757882	CTGTATATCATTCTT
chr12	91665414	91665415	chr12:91665415:C:T	rs11612413	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr12	91744099	91744100	chr12:91744100:C:T	rs117343166	C	T	C	Sox1.mouse_HMG_2	8	1	+	7.478436240401127	1.8340095500191398	TTAAATTACAGTCAC
chr12	91804432	91804433	chr12:91804433:G:A	rs78165207	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	91845389	91845390	chr12:91845390:A:G	rs76280667	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.722154807959392	-2.1865999713558284	TTGATTAGCATTCTG
chr12	91914514	91914515	chr12:91914515:C:T	rs115809172	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr12	91914528	91914529	chr12:91914529:T:C	rs4463881	T	C	C	Sox1.mouse_HMG_2	13	1	-	5.9589548099262215	1.0128371221535732	CTGAAATCCAGTCAT
chr12	91928695	91928696	chr12:91928696:T:G	rs4643111	T	G	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr12	91966062	91966063	chr12:91966063:G:A	rs7132890	G	A	G	Sox1.mouse_HMG_2	0	1	-	3.4548461586059203	3.1889029648364877	CTGAGTATAATTCAC
chr12	92019237	92019238	chr12:92019238:G:T	rs10459149	G	T	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	92065155	92065156	chr12:92065156:T:C	chr12:92065156:T:C	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr12	92501845	92501846	chr12:92501846:G:A	rs11106597	G	A	g	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	92592759	92592760	chr12:92592760:A:G	rs55654693	A	G	A	Sox1.mouse_HMG_2	4	1	+	6.2525740683452256	-0.5688387008148464	ACCAATTCCATTCAT
chr12	92884246	92884247	chr12:92884247:A:G	rs144093690	A	G	-	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr12	92908388	92908389	chr12:92908389:C:T	rs11610414	C	T	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	93004948	93004949	chr12:93004949:T:G	rs1245294055	T	G	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr12	93040191	93040192	chr12:93040192:C:T	rs34324972	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.1331209445445145	0.4877184115282943	AAGAAATACATTCAT
chr12	93069754	93069755	chr12:93069755:A:C	rs990652060	A	C	A	Sox1.mouse_HMG_2	7	1	-	4.499672665435527	4.656247020269627	ATGACTATGATTCTC
chr12	93352160	93352161	chr12:93352161:C:T	rs10859485	C	T	c	Sox1.mouse_HMG_2	9	1	-	6.582749698879456	13.491504478194676	ATGAATTACGTTCTT
chr12	93536965	93536966	chr12:93536966:T:C	rs151193140	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr12	93553984	93553985	chr12:93553985:A:G	rs112523894	A	G	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr12	93701696	93701697	chr12:93701697:A:G	rs73359682	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.632248568418059	-1.276506210897161	GTGAGTAACATTCTC
chr12	93713935	93713936	chr12:93713936:C:T	rs10859561	C	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	93760048	93760049	chr12:93760049:A:G	rs4343069	A	G	A	Sox1.mouse_HMG_2	3	1	+	5.472689278983102	-1.4360655003321166	GAGACTACCAGTCAC
chr12	93858253	93858254	chr12:93858254:C:T	rs77731959	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	93888124	93888125	chr12:93888125:G:A	rs10859608	G	A	a	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr12	93891779	93891780	chr12:93891780:C:A	rs7957728	C	A	a	Sox1.mouse_HMG_2	6	1	-	4.108239807101461	4.7074117942287055	CTGACCGGCATTCAA
chr12	93909019	93909020	chr12:93909020:G:A	rs58442937	G	A	g	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr12	93922676	93922677	chr12:93922677:A:G	rs191596665	A	G	A	Sox1.mouse_HMG_2	0	1	+	9.47468803085639	8.47045179822119	ATGACTCACATTCAA
chr12	94092704	94092705	chr12:94092705:G:C	rs7959324	G	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr12	94092744	94092745	chr12:94092745:C:T	rs10859656	C	T	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	94112297	94112298	chr12:94112298:T:C	rs142278112	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.325530414981611	-2.495882354178461	CTGGATCCCATTCAC
chr12	94112321	94112322	chr12:94112322:C:T	rs9805021	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	94115452	94115453	chr12:94115453:G:A	rs7138421	G	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr12	94231441	94231442	chr12:94231442:G:A	rs11833491	G	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	94231460	94231461	chr12:94231461:A:G	rs11838129	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	94532701	94532702	chr12:94532702:G:C	rs543084780	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr12	94576970	94576971	chr12:94576971:A:G	rs1296522	A	G	g	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr12	94743116	94743117	chr12:94743117:A:G	rs7306517	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	94769356	94769357	chr12:94769357:A:T	rs7134586	A	T	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	94769365	94769366	chr12:94769366:T:C	rs117605927	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr12	94803029	94803030	chr12:94803030:C:T	rs17252137	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr12	94982045	94982046	chr12:94982046:G:A	rs7134496	G	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr12	94997320	94997321	chr12:94997321:G:A	rs10745715	G	A	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	95083651	95083652	chr12:95083652:A:G	rs882583	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	95097753	95097754	chr12:95097754:G:A	rs11107893	G	A	G	Sox1.mouse_HMG_2	4	1	+	8.826612121576352	15.648024890736428	GTGAGTAACATTCAC
chr12	95100954	95100955	chr12:95100955:G:A	rs62621234	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr12	95100983	95100984	chr12:95100984:A:C	rs4762452	A	C	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr12	95100992	95100993	chr12:95100993:C:T	rs7135574	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr12	95103458	95103459	chr12:95103459:G:A	rs757146170	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	95521717	95521718	chr12:95521718:T:C	rs301006	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.304469576585697	-2.6042852027295234	ATCACTTGCAGTCAG
chr12	95733189	95733190	chr12:95733190:T:A	rs76318579	T	A	T	Sox1.mouse_HMG_2	14	1	+	2.7432054389251497	1.4254960742424636	CTTATTACCATTCAT
chr12	95804481	95804482	chr12:95804482:A:T	rs10777739	A	T	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	95828408	95828409	chr12:95828409:G:A	rs7310140	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr12	95970920	95970921	chr12:95970921:A:G	rs10745745	A	G	A	Sox1.mouse_HMG_2	6	1	+	7.536423806043835	6.096246384175197	ACAAATAGCATTCAT
chr12	96098669	96098670	chr12:96098670:A:G	rs2540513	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.24024053093461	-2.668514248380611	GTGGATAGCATTTAT
chr12	96230341	96230342	chr12:96230342:G:A	rs9971896	G	A	g	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr12	96425425	96425426	chr12:96425426:G:A	rs11108500	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	96425440	96425441	chr12:96425441:T:A	rs76922134	T	A	T	Sox1.mouse_HMG_2	9	1	-	4.850508181781541	-2.0582465975336777	ATGCATTTCATTCTC
chr12	96485427	96485428	chr12:96485428:A:G	rs138990890	A	G	a	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr12	96930847	96930848	chr12:96930848:A:G	rs249568	A	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	97083047	97083048	chr12:97083048:C:T	rs73230233	C	T	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	97457454	97457455	chr12:97457455:T:G	rs79978636	T	G	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	97474355	97474356	chr12:97474356:G:A	rs11109049	G	A	G	Sox1.mouse_HMG_2	1	1	-	2.9582817951534572	7.602274102646691	ACGAAAGGCATTCAC
chr12	97556516	97556517	chr12:97556517:A:G	rs574398876	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	97556595	97556596	chr12:97556596:A:G	rs913736708	A	G	A	Sox1.mouse_HMG_2	4	1	+	6.429406416338028	-0.39200635282204266	TTCAATAGCATTCTC
chr12	97751260	97751261	chr12:97751261:C:T	rs7964717	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr12	98364140	98364141	chr12:98364141:A:G	rs6538863	A	G	G	Sox1.mouse_HMG_2	4	1	+	6.20562343940892	-0.6157893297511537	GTGAATAATATTTAT
chr12	98389143	98389144	chr12:98389144:A:G	rs11109464	A	G	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr12	98402658	98402659	chr12:98402659:G:T	rs4522216	G	T	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	98418842	98418843	chr12:98418843:G:A	rs1053236742	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	98440403	98440404	chr12:98440404:T:C	rs56745898	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	98504080	98504081	chr12:98504081:T:C	rs765149868	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	98504119	98504120	chr12:98504120:A:G	rs575321906	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	99060006	99060007	chr12:99060007:C:T	rs61933369	C	T	C	Sox1.mouse_HMG_2	9	1	-	6.329491257784398	13.23824603709962	CTGACTTCCGTTCAT
chr12	99436967	99436968	chr12:99436968:T:C	rs11109842	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr12	99436989	99436990	chr12:99436990:G:C	rs12230011	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr12	99522310	99522311	chr12:99522311:A:T	rs10860455	A	T	t	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	99746190	99746191	chr12:99746191:A:G	rs10745867	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr12	99752978	99752979	chr12:99752979:T:C	rs10860508	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	99890561	99890562	chr12:99890562:G:A	rs11110089	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.029849435433202	4.730904254974278	CTCACTCGCATTCAT
chr12	99960788	99960789	chr12:99960789:C:T	rs10507114	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr12	99982613	99982614	chr12:99982614:T:C	rs61941608	T	C	C	Sox1.mouse_HMG_2	5	1	+	3.556043556757719	-3.3527112225575006	ATAAATTGCTTTCAC
chr12	100399200	100399201	chr12:100399201:T:C	rs943402	T	C	C	Sox1.mouse_HMG_2	1	1	+	7.968905201940594	3.324912894447362	TTGCATACCATTCAA
chr12	100549854	100549855	chr12:100549855:T:C	rs187977023	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	100576883	100576884	chr12:100576884:G:A	rs35714	G	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr12	100767668	100767669	chr12:100767669:G:A	rs61944803	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.4990054748086106	3.0380610211015053	TTGCATGCCATTCTG
chr12	100829881	100829882	chr12:100829882:T:C	rs11110540	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr12	100830375	100830376	chr12:100830376:G:A	rs10860642	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	100830402	100830403	chr12:100830403:C:T	rs115661249	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	100866108	100866109	chr12:100866109:G:A	rs10745900	G	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	100927627	100927628	chr12:100927628:G:A	rs657331	G	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	101207378	101207379	chr12:101207379:G:C	rs7137298	G	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr12	101227922	101227923	chr12:101227923:G:A	rs3914496	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr12	101302683	101302684	chr12:101302684:T:C	chr12:101302684:T:C	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr12	101582771	101582772	chr12:101582772:A:C	rs145724821	A	C	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr12	101727277	101727278	chr12:101727278:G:A	rs79215265	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr12	101902387	101902388	chr12:101902388:T:A	rs10778158	T	A	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr12	101916337	101916338	chr12:101916338:T:C	rs7978801	T	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	101925591	101925592	chr12:101925592:C:A	rs1203294983	C	A	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr12	102120181	102120182	chr12:102120182:T:C	rs548827009	T	C	T	Sox1.mouse_HMG_2	8	1	-	3.3853515801979297	2.5163137331743197	CTGAATACAGTTCAA
chr12	102120203	102120204	chr12:102120204:G:T	rs146932578	G	T	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	102120206	102120207	chr12:102120207:T:A	chr12:102120207:T:A	T	A	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr12	102178154	102178155	chr12:102178155:A:G	rs76157805	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.602603610307859	4.727991267585122	TTGACATTCATTCAT
chr12	102543704	102543705	chr12:102543705:C:T	chr12:102543705:C:T	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	103014026	103014027	chr12:103014027:G:A	rs34481973	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	103739576	103739577	chr12:103739577:G:A	rs4981029	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	103759077	103759078	chr12:103759078:G:T	rs3817303	G	T	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	103809376	103809377	chr12:103809377:T:C	rs141300575	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	103850655	103850656	chr12:103850656:C:T	rs1370413	C	T	T	Sox1.mouse_HMG_2	14	1	-	4.501516594265477	4.33687534637053	CTGTATTGCAGTCAG
chr12	103928365	103928366	chr12:103928366:T:C	rs1165677	T	C	C	Sox1.mouse_HMG_2	11	1	+	2.532486953089397	-4.376267826225822	ATGAATTCCCATCAT
chr12	103966390	103966391	chr12:103966391:C:T	rs375464651	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	104142493	104142494	chr12:104142494:A:C	rs61939196	A	C	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	104165998	104165999	chr12:104165999:G:A	rs59014318	G	A	G	Sox1.mouse_HMG_2	4	1	-	2.535955717498861	-1.9033959837942889	CTGGCTGCCATTCTT
chr12	104220223	104220224	chr12:104220224:C:G	rs140072739	C	G	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	104408040	104408041	chr12:104408041:T:C	rs10861216	T	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr12	104486229	104486230	chr12:104486230:A:C	rs61937673	A	C	A	Sox1.mouse_HMG_2	0	1	+	6.594224107663239	5.92534790194488	ATGTATACCAGTCAC
chr12	104582782	104582783	chr12:104582783:C:T	rs313325	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	104613346	104613347	chr12:104613347:A:G	rs10778344	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr12	104864808	104864809	chr12:104864809:A:G	rs78999574	A	G	A	Sox1.mouse_HMG_2	14	1	-	4.038872596909364	3.164260254186628	TTGCATAATATTCAT
chr12	104963269	104963270	chr12:104963270:G:A	rs12321381	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	105026048	105026049	chr12:105026049:A:C	rs11112317	A	C	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr12	105106643	105106644	chr12:105106644:T:A	rs9919746	T	A	T	Sox1.mouse_HMG_2	6	1	-	5.787880914591983	4.946875479850589	TTGAAGAGCATTCTT
chr12	105254409	105254410	chr12:105254410:T:C	rs537252372	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr12	105254421	105254422	chr12:105254422:C:T	rs35679386	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr12	105327193	105327194	chr12:105327194:A:G	rs11112468	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	105330372	105330373	chr12:105330373:C:G	chr12:105330373:C:G	C	G	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	105658754	105658755	chr12:105658755:C:T	rs2888868	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	105676699	105676700	chr12:105676700:T:C	rs7299119	T	C	t	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr12	106079641	106079642	chr12:106079642:C:T	rs12815216	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr12	106081044	106081045	chr12:106081045:C:T	rs11613771	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	106106565	106106566	chr12:106106566:C:T	rs78442120	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr12	106112710	106112711	chr12:106112711:C:T	rs12316899	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	106123098	106123099	chr12:106123099:T:C	rs1215603	T	C	C	Sox1.mouse_HMG_2	5	1	+	4.4829222029243425	-2.4258325763908766	GGCAATTTCATTCAT
chr12	106136141	106136142	chr12:106136142:C:G	rs537800267	C	G	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	106254063	106254064	chr12:106254064:C:T	rs12231439	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	106360851	106360852	chr12:106360852:G:A	rs11831881	G	A	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	106564815	106564816	chr12:106564816:A:C	rs714159	A	C	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr12	106633512	106633513	chr12:106633513:A:C	rs12321311	A	C	a	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr12	106712767	106712768	chr12:106712768:G:A	rs10431462	G	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr12	107014358	107014359	chr12:107014359:G:A	rs75063577	G	A	G	Sox1.mouse_HMG_2	14	1	-	3.73717659982404	4.611788942546776	ATCAGTAGCATTCAC
chr12	107014378	107014379	chr12:107014379:G:C	rs10746073	G	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr12	107092728	107092729	chr12:107092729:G:A	rs12579475	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	107200881	107200882	chr12:107200882:T:C	rs11113216	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	107373869	107373870	chr12:107373870:G:C	rs7959107	G	C	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	107498739	107498740	chr12:107498740:G:C	rs11113352	G	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr12	107595139	107595140	chr12:107595140:A:G	rs1420735	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	108109613	108109614	chr12:108109614:T:C	rs10861869	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	108109654	108109655	chr12:108109655:G:A	rs10861870	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr12	108118976	108118977	chr12:108118977:T:G	rs11113744	T	G	T	Sox1.mouse_HMG_2	9	1	-	6.451629152570563	-0.4571256267446574	GTGACTTACAATCAT
chr12	108132607	108132608	chr12:108132608:C:T	rs7952818	C	T	C	Sox1.mouse_HMG_2	4	1	-	2.2532173691779764	9.07463013833805	CTGCGTAACATTCAC
chr12	108376284	108376285	chr12:108376285:G:A	rs10778632	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr12	108457878	108457879	chr12:108457879:C:T	rs11113898	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr12	108569916	108569917	chr12:108569917:A:G	rs10778649	A	G	A	Sox1.mouse_HMG_2	7	1	+	5.037896754275135	4.336841934734059	TTAAAAAACATTCAT
chr12	109095261	109095262	chr12:109095262:C:T	rs1642030	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	109225294	109225295	chr12:109225295:C:T	rs4766583	C	T	T	Sox1.mouse_HMG_2	8	1	+	5.069190601882168	-0.5752360884998188	TTGACTTACAGTTAC
chr12	109244174	109244175	chr12:109244175:G:A	rs914313493	G	A	G	Sox1.mouse_HMG_2	9	1	+	8.1737050322753	15.08245981159052	GTGAATGACGTTCAT
chr12	109278062	109278063	chr12:109278063:A:G	rs146853631	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.0284767181847805	-1.792936050975292	GTGAATAACAGTTTC
chr12	109280513	109280514	chr12:109280514:G:C	rs2075436	G	C	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr12	109463150	109463151	chr12:109463151:C:T	rs558420570	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr12	109470278	109470279	chr12:109470279:G:C	rs4766474	G	C	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	109479100	109479101	chr12:109479101:C:T	rs150677233	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	109519326	109519327	chr12:109519327:G:A	rs73196282	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	109597869	109597870	chr12:109597870:T:G	rs568118939	T	G	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	109614179	109614180	chr12:109614180:T:C	rs17670859	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	109698468	109698469	chr12:109698469:C:G	rs735465	C	G	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr12	109724973	109724974	chr12:109724974:G:A	rs113636226	G	A	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr12	109738455	109738456	chr12:109738456:G:A	rs7973101	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr12	109900068	109900069	chr12:109900069:C:T	rs11068833	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	110317096	110317097	chr12:110317097:C:T	rs76890228	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr12	110583970	110583971	chr12:110583971:C:T	rs117422518	C	T	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	110583986	110583987	chr12:110583987:T:C	rs370638830	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	110744439	110744440	chr12:110744440:G:A	rs9795788	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	111895855	111895856	chr12:111895856:C:A	rs4766705	C	A	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr12	112025491	112025492	chr12:112025492:A:G	rs4767293	A	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr12	112086165	112086166	chr12:112086166:C:T	rs11066156	C	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	112154891	112154892	chr12:112154892:C:G	rs191791355	C	G	C	Sox1.mouse_HMG_2	8	1	+	4.614027462955028	-1.1045071995806817	TTGAATACCCTTTAT
chr12	112209967	112209968	chr12:112209968:T:C	rs11611847	T	C	T	Sox1.mouse_HMG_2	14	1	+	3.721424355156429	2.846812012433693	ATTCATAACATTCAT
chr12	112306829	112306830	chr12:112306830:T:C	rs1989949	T	C	.	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr12	112590624	112590625	chr12:112590625:G:A	rs67436553	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr12	112851147	112851148	chr12:112851148:G:T	rs4767018	G	T	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr12	113056408	113056409	chr12:113056409:T:A	rs543477577	T	A	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr12	113111912	113111913	chr12:113111913:A:T	rs73207018	A	T	A	Sox1.mouse_HMG_2	3	1	+	4.196125339071259	-2.7126294402439597	ATTACTATCATTCTT
chr12	113247213	113247214	chr12:113247214:C:T	rs114519078	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	113247214	113247215	chr12:113247215:G:A	rs73439840	G	A	G	Sox1.mouse_HMG_2	14	1	-	2.438066844073114	3.31267918679585	ATGAATACCCTCCAC
chr12	113592262	113592263	chr12:113592263:T:C	rs77845881	T	C	T	Sox1.mouse_HMG_2	7	1	-	3.550258168357452	2.849203348816376	ATGAATCAGAGTCAG
chr12	113855849	113855850	chr12:113855850:G:C	rs11614425	G	C	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr12	114018847	114018848	chr12:114018848:T:C	rs116517384	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr12	114316454	114316455	chr12:114316455:G:C	rs76857415	G	C	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr12	114431337	114431338	chr12:114431338:C:T	rs1248056	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr12	114613512	114613513	chr12:114613513:C:G	rs12308436	C	G	G	Sox1.mouse_HMG_2	1	1	-	2.6714484076389162	2.9759195867174917	CGGAGTTGCATTCAC
chr12	114934219	114934220	chr12:114934220:C:T	rs77877221	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr12	114974937	114974938	chr12:114974938:T:C	rs10744843	T	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr12	115137924	115137925	chr12:115137925:C:T	rs1828384	C	T	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr12	115137943	115137944	chr12:115137944:T:A	rs67470234	T	A	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	115234476	115234477	chr12:115234477:T:C	rs12319067	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.307216402853448	-2.6015383764617726	GTGAATTCCATGCTC
chr12	115234505	115234506	chr12:115234506:G:A	rs1529331	G	A	g	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	115244571	115244572	chr12:115244572:A:G	rs185607179	A	G	A	Sox1.mouse_HMG_2	7	1	-	4.090365145032912	4.551309598740019	ATGAATCTCCTTCAA
chr12	115942216	115942217	chr12:115942217:C:T	rs3843652	C	T	T	Sox1.mouse_HMG_2	2	1	-	4.338252160257042	-0.3071503727591737	TAGAAAAGCATTCAT
chr12	116003295	116003296	chr12:116003296:T:A	rs536646627	T	A	T	Sox1.mouse_HMG_2	8	1	-	4.894009528544307	4.099079653674418	ATGAAAAAAATTCAC
chr12	116043860	116043861	chr12:116043861:A:G	rs1895625	A	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	116383580	116383581	chr12:116383581:G:A	rs117843073	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr12	116444492	116444493	chr12:116444493:A:G	rs7965558	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.020735448885496	-3.800677320274575	GTGAATAAGTTTCAC
chr12	116529864	116529865	chr12:116529865:A:C	rs11068059	A	C	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	116594140	116594141	chr12:116594141:A:G	rs7314617	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr12	116892426	116892427	chr12:116892427:G:A	rs73395528	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr12	117102849	117102850	chr12:117102850:G:A	rs11068337	G	A	G	Sox1.mouse_HMG_2	14	1	-	5.448848574048839	6.323460916771575	ATGAATTGCGGTCAC
chr12	117167533	117167534	chr12:117167534:G:C	rs10850782	G	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr12	117356194	117356195	chr12:117356195:G:A	rs35097914	G	A	G	Sox1.mouse_HMG_2	6	1	+	4.830509594964473	6.27068701683311	ATGAATGACATGCTG
chr12	117377961	117377962	chr12:117377962:A:G	rs34197546	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	117487304	117487305	chr12:117487305:G:A	rs60619587	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr12	117994718	117994719	chr12:117994719:C:T	rs10850947	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr12	118339165	118339166	chr12:118339166:T:G	rs61943365	T	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr12	118781853	118781854	chr12:118781854:A:G	rs2649965	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.1859476741727715	-1.6354650949872993	CTGTATATCAGTCAG
chr12	118901523	118901524	chr12:118901524:G:A	rs11069159	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr12	118993414	118993415	chr12:118993415:A:G	rs35995108	A	G	A	Sox1.mouse_HMG_2	13	1	-	5.7685304654377605	2.642178009466706	AGGAATGTCATTCTA
chr12	119122694	119122695	chr12:119122695:A:G	rs10774486	A	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	119552239	119552240	chr12:119552240:C:T	rs7972859	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.4714698982397016	-1.201117205428553	CTGAGTTAAATTCAC
chr12	119684999	119685000	chr12:119685000:C:T	rs175878	C	T	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr12	119974491	119974492	chr12:119974492:G:C	rs1256074487	G	C	G	Sox1.mouse_HMG_2	14	1	+	6.831596561387042	7.110052335452044	TTGAATTTCATCCAG
chr12	120250768	120250769	chr12:120250769:T:C	rs117468623	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.665816171513128	0.021823864019895	CTAAATCACATTCTT
chr12	120754944	120754945	chr12:120754945:C:T	rs1307439691	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr12	120814308	120814309	chr12:120814309:G:A	rs627211	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr12	121068237	121068238	chr12:121068238:A:T	rs117071289	A	T	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr12	121167146	121167147	chr12:121167147:A:G	rs12299020	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr12	121477004	121477005	chr12:121477005:T:A	rs4980986	T	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	121581056	121581057	chr12:121581057:C:G	rs535031251	C	G	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr12	121693561	121693562	chr12:121693562:G:A	rs2954112	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr12	121958898	121958899	chr12:121958899:A:G	rs78630645	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.133120944544514	4.258508601821777	AAGGATTACATTCAT
chr12	122063730	122063731	chr12:122063731:G:A	rs116182070	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	122152329	122152330	chr12:122152330:T:C	rs2137200	T	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	122186924	122186925	chr12:122186925:C:G	rs12424694	C	G	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr12	122464097	122464098	chr12:122464098:G:A	rs147716385	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	122517189	122517190	chr12:122517190:G:A	rs1599748	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	122594169	122594170	chr12:122594170:C:A	rs75333702	C	A	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	122681948	122681949	chr12:122681949:T:C	rs542990628	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr12	122894228	122894229	chr12:122894229:A:G	chr12:122894229:A:G	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr12	123030814	123030815	chr12:123030815:G:A	rs73411057	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr12	123398930	123398931	chr12:123398931:C:T	rs116265083	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr12	123433045	123433046	chr12:123433046:A:G	rs28531860	A	G	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr12	123548271	123548272	chr12:123548272:A:G	rs5027860	A	G	g	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	123915713	123915714	chr12:123915714:T:C	rs10846577	T	C	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr12	123915730	123915731	chr12:123915731:C:T	rs10846578	C	T	C	Sox1.mouse_HMG_2	1	1	-	9.89883648264128	10.203307661719855	CGGAATATCATTCAG
chr12	124006857	124006858	chr12:124006858:G:A	rs141466392	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	124022083	124022084	chr12:124022084:T:C	rs10773049	T	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	124260076	124260077	chr12:124260077:T:G	rs7966873	T	G	G	Sox1.mouse_HMG_2	13	1	-	9.895861205311332	3.5751451961819853	CTGAATAATATTCAA
chr12	124260079	124260080	chr12:124260080:A:G	rs78626151	A	G	A	Sox1.mouse_HMG_2	10	1	-	9.895861205311332	3.0479196270310505	CTGAATAATATTCAA
chr12	124280356	124280357	chr12:124280357:T:C	rs1609939	T	C	C	Sox1.mouse_HMG_2	13	1	-	4.916520128969357	-0.029597558803291374	CTGACTGCCAATCAC
chr12	124497531	124497532	chr12:124497532:A:G	rs66494628	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	124499941	124499942	chr12:124499942:A:G	rs1242999	A	G	G	Sox1.mouse_HMG_2	10	1	-	4.993934461354555	-1.8540071169257255	CTGACTTTCATCCAC
chr12	124714028	124714029	chr12:124714029:A:G	rs838925	A	G	g	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr12	124714042	124714043	chr12:124714043:T:C	rs80276197	T	C	t	Sox1.mouse_HMG_2	10	1	+	2.159611070008112	-4.688330508272167	ATGAAAACCTTTCAG
chr12	124741224	124741225	chr12:124741225:C:T	rs149657706	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	125806794	125806795	chr12:125806795:A:G	rs11058342	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr12	125889749	125889750	chr12:125889750:G:A	rs536359824	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr12	126139617	126139618	chr12:126139618:T:C	rs7960175	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	126185332	126185333	chr12:126185333:A:G	rs10847112	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr12	126244254	126244255	chr12:126244255:C:G	chr12:126244255:C:G	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr12	126390281	126390282	chr12:126390282:A:G	rs11058623	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr12	126396771	126396772	chr12:126396772:T:C	rs7972835	T	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	126424891	126424892	chr12:126424892:A:G	rs60658183	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.317310621260058	-1.5306309570202234	CATAATAACATTCAT
chr12	126791240	126791241	chr12:126791241:C:T	rs2048502	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	126808000	126808001	chr12:126808001:A:C	rs7967965	A	C	c	Sox1.mouse_HMG_2	7	1	+	8.248340183574197	7.851655462906128	AAGAATGACATTCTT
chr12	127074245	127074246	chr12:127074246:A:G	chr12:127074246:A:G	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr12	127272883	127272884	chr12:127272884:C:T	rs137883665	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr12	127272895	127272896	chr12:127272896:T:A	rs11059052	T	A	T	Sox1.mouse_HMG_2	9	1	-	4.043282681318484	-2.865472097996737	ATGACAGACAGTCAT
chr12	127296684	127296685	chr12:127296685:C:A	rs73233864	C	A	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	127319766	127319767	chr12:127319767:C:T	rs2695968	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	127431517	127431518	chr12:127431518:C:T	rs11059117	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.4562719418802486	-1.188154748501738	TTGCATCACATTCAC
chr12	127490732	127490733	chr12:127490733:A:T	rs10847381	A	T	T	Sox1.mouse_HMG_2	0	1	-	5.097905528400585	6.032724927888377	TGCAATAACATTCAG
chr12	127602527	127602528	chr12:127602528:A:G	rs145112016	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr12	127606381	127606382	chr12:127606382:T:G	rs7955165	T	G	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr12	127606449	127606450	chr12:127606450:C:T	rs11059276	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr12	128080196	128080197	chr12:128080197:C:T	rs61939101	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	128126128	128126129	chr12:128126129:A:G	rs11609355	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	128259666	128259667	chr12:128259667:A:G	rs10847586	A	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr12	128500032	128500033	chr12:128500033:G:C	rs11608385	G	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	128586002	128586003	chr12:128586003:A:G	rs4882791	A	G	G	Sox1.mouse_HMG_2	1	1	-	6.265703684090775	1.6217113765975428	ATGAAGCACATTCAT
chr12	128586006	128586007	chr12:128586007:T:C	rs968195	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr12	128755179	128755180	chr12:128755180:G:C	rs7965934	G	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr12	128799072	128799073	chr12:128799073:C:A	rs541089091	C	A	C	Sox1.mouse_HMG_2	8	1	+	2.643802981077493	-2.2056938344346055	CTGAAAACCGTTCAT
chr12	128821067	128821068	chr12:128821068:A:G	rs1484934	A	G	G	Sox1.mouse_HMG_2	9	1	+	1.9434693471146904	-4.965285432200529	CTGGCTCCCATTCAC
chr12	128857404	128857405	chr12:128857405:G:T	rs2398441	G	T	T	Sox1.mouse_HMG_2	0	1	-	3.301226592636319	3.970102798354676	CTGAATAGCAGCCTT
chr12	128863331	128863332	chr12:128863332:G:A	rs12231329	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	128863332	128863333	chr12:128863333:A:G	rs12230080	A	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr12	128992034	128992035	chr12:128992035:T:C	rs489270	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr12	128992042	128992043	chr12:128992043:A:G	rs489304	A	G	a	Sox1.mouse_HMG_2	4	1	+	3.3992350961932147	-3.4221776729668583	GTGCATTGCATTTAT
chr12	128997053	128997054	chr12:128997054:T:G	rs470609	T	G	t	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	129211047	129211048	chr12:129211048:G:A	rs757847683	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr12	129561395	129561396	chr12:129561396:C:T	rs1430244673	C	T	C	Sox1.mouse_HMG_2	1	1	+	4.287552217861846	8.931544525355077	ACTAATTTCATTCAT
chr12	129574606	129574607	chr12:129574607:T:G	rs155688	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.433824874296404	-0.5146386122754067	ATGAATGCCCTTCTG
chr12	129574632	129574633	chr12:129574633:G:A	rs77265977	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr12	129676155	129676156	chr12:129676156:G:A	rs142386984	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	129676190	129676191	chr12:129676191:A:T	rs11060492	A	T	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	129750767	129750768	chr12:129750768:G:A	rs35604986	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	129845361	129845362	chr12:129845362:G:A	rs140131923	G	A	g	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	129956064	129956065	chr12:129956065:G:C	rs115236364	G	C	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr12	130114190	130114191	chr12:130114191:G:A	rs79469333	G	A	G	Sox1.mouse_HMG_2	1	1	+	4.180301820105571	4.4847729991841465	CGGAATATGATTCAG
chr12	130128843	130128844	chr12:130128844:A:T	rs1962384	A	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	130243152	130243153	chr12:130243153:C:A	rs4759636	C	A	A	Sox1.mouse_HMG_2	8	1	+	6.114351897787018	1.2648550822749196	ATGAATAACATTATA
chr12	130288411	130288412	chr12:130288412:C:T	rs1623967	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	130332091	130332092	chr12:130332092:G:A	rs2398510	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr12	130429538	130429539	chr12:130429539:C:G	rs12425909	C	G	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr12	130472779	130472780	chr12:130472780:C:G	rs7976450	C	G	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr12	130513693	130513694	chr12:130513694:A:G	rs7298605	A	G	A	Sox1.mouse_HMG_2	5	1	-	5.262483253907365	-1.6462715254078557	TTGAATTGGATTCTC
chr12	130537319	130537320	chr12:130537320:G:A	rs12424036	G	A	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr12	130626691	130626692	chr12:130626692:A:G	rs12425929	A	G	-	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	130706037	130706038	chr12:130706038:A:G	rs2632608	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr12	130748436	130748437	chr12:130748437:T:C	rs4759513	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.120003442957094	-2.727938135323187	AAGGATAGCATTCAG
chr12	130748443	130748444	chr12:130748444:G:T	rs4759514	G	T	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr12	130949505	130949506	chr12:130949506:G:T	rs77089081	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr12	131083683	131083684	chr12:131083684:C:T	rs12811004	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr12	131104472	131104473	chr12:131104473:C:T	rs183552678	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	131143411	131143412	chr12:131143412:G:A	rs11061345	G	A	A	Sox1.mouse_HMG_2	12	1	-	4.578672160542107	-0.09391494312614862	CCAAATGCCATTCAG
chr12	131515089	131515090	chr12:131515090:T:C	rs2398557	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr12	131653481	131653482	chr12:131653482:G:A	rs7301681	G	A	g	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	131685608	131685609	chr12:131685609:G:A	rs4964905	G	A	-	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr12	131685783	131685784	chr12:131685784:C:T	rs116964869	C	T	-	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr12	131685819	131685820	chr12:131685820:T:C	rs4964906	T	C	-	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr12	131686006	131686007	chr12:131686007:G:A	rs11246746	G	A	-	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr12	131686677	131686678	chr12:131686678:A:G	rs10902430	A	G	-	Sox1.mouse_HMG_2	6	1	-	4.116102638943593	0.6046930709966214	GTGATTTCCATTCTG
chr12	131690726	131690727	chr12:131690727:A:G	rs12821118	A	G	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr12	131761435	131761436	chr12:131761436:G:C	rs10794425	G	C	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr12	131985536	131985537	chr12:131985537:G:C	rs557234733	G	C	G	Sox1.mouse_HMG_2	14	1	-	7.575461572616009	7.297005798551006	GTGACTTAAATTCAC
chr12	132075568	132075569	chr12:132075569:G:A	rs76010850	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	132289096	132289097	chr12:132289097:G:A	rs75237016	G	A	G	Sox1.mouse_HMG_2	10	1	+	9.417624715045696	5.322280652490513	GTGAATCACAGTCAT
chr12	132289102	132289103	chr12:132289103:C:T	rs28433145	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr12	132438451	132438452	chr12:132438452:C:T	rs4883600	C	T	t	Sox1.mouse_HMG_2	0	1	-	6.530766566735943	7.535002799371144	GTGACAAGCATTCAT
chr12	132460504	132460505	chr12:132460505:G:A	rs11147043	G	A	g	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr12	132569342	132569343	chr12:132569343:A:C	rs6560885	A	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr12	132600384	132600385	chr12:132600385:G:A	rs2323977	G	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr12	132631380	132631381	chr12:132631381:G:C	rs4883626	G	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr12	132673855	132673856	chr12:132673856:A:G	rs5744774	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr12	132773033	132773034	chr12:132773034:C:G	rs3741483	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr12	132828291	132828292	chr12:132828292:A:C	rs984973495	A	C	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr13	16659843	16659844	chr13:16659844:C:A	rs1442034877	C	A	.	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr13	16894697	16894698	chr13:16894698:T:A	rs1295589088	T	A	.	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr13	18953065	18953066	chr13:18953066:T:G	rs9317779	T	G	.	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr13	19056146	19056147	chr13:19056147:T:C	rs61944512	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr13	19118538	19118539	chr13:19118539:A:C	rs61944966	A	C	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	19150488	19150489	chr13:19150489:G:A	rs4770843	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr13	19267858	19267859	chr13:19267859:C:G	rs7994436	C	G	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr13	19663436	19663437	chr13:19663437:T:C	rs17085415	T	C	C	Sox1.mouse_HMG_2	9	1	-	6.547475635746947	-0.361279143568273	TTGACTGCCATTTAG
chr13	20159560	20159561	chr13:20159561:T:C	rs7320129	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr13	20190675	20190676	chr13:20190676:T:C	rs74035964	T	C	C	Sox1.mouse_HMG_2	9	1	-	3.493088575241035	-3.415666204074185	GTGAAGACAATTCAC
chr13	20253515	20253516	chr13:20253516:C:T	rs9509120	C	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr13	20258315	20258316	chr13:20258316:T:C	rs71424099	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr13	20482161	20482162	chr13:20482162:T:G	rs7986974	T	G	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr13	20711766	20711767	chr13:20711767:C:G	rs1888001	C	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr13	20717921	20717922	chr13:20717922:G:A	rs12871071	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr13	21322703	21322704	chr13:21322704:A:G	rs35811168	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr13	21322732	21322733	chr13:21322733:C:T	rs35469769	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr13	21596135	21596136	chr13:21596136:C:T	rs11148172	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr13	22061272	22061273	chr13:22061273:T:C	rs2146681	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr13	22198099	22198100	chr13:22198100:A:G	rs117255466	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr13	22240211	22240212	chr13:22240212:A:G	rs4769206	A	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	22272223	22272224	chr13:22272224:A:C	rs1275317911	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr13	23060998	23060999	chr13:23060999:A:T	rs9552811	A	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	23488370	23488371	chr13:23488371:A:G	rs4770454	A	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr13	23516317	23516318	chr13:23516318:C:T	rs7334346	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.611788942546776	-0.060798161121478844	ATCATTAGCATTCAT
chr13	23516557	23516558	chr13:23516558:G:A	rs17078882	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr13	23772921	23772922	chr13:23772922:A:T	rs4770491	A	T	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	23797386	23797387	chr13:23797387:T:C	rs17079355	T	C	C	Sox1.mouse_HMG_2	4	1	-	4.891824700854204	-1.9295880683058706	ATGAATTTCATTTGA
chr13	23833157	23833158	chr13:23833158:T:C	rs2312560	T	C	T	Sox1.mouse_HMG_2	0	1	+	5.437202287385391	5.703145481154824	TTAAATGCCATTTAT
chr13	23847563	23847564	chr13:23847564:T:C	rs9510893	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr13	23898442	23898443	chr13:23898443:G:A	rs35449605	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	23898575	23898576	chr13:23898576:G:A	rs112214548	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr13	24068659	24068660	chr13:24068660:C:T	rs2862248	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr13	24092017	24092018	chr13:24092018:C:T	rs551917118	C	T	C	Sox1.mouse_HMG_2	10	1	-	4.330391986399384	0.23504792384420042	ATGACTAACCGTCAG
chr13	24124979	24124980	chr13:24124980:T:C	rs1923909	T	C	C	Sox1.mouse_HMG_2	14	1	+	4.739198303997241	3.8645859612745044	CTGAAACTCATTCAT
chr13	24219677	24219678	chr13:24219678:C:T	rs6490887	C	T	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	24298570	24298571	chr13:24298571:G:A	rs73455753	G	A	G	Sox1.mouse_HMG_2	12	1	-	11.920536672416935	7.247949568748678	CTGACTTCCATTCAA
chr13	24454944	24454945	chr13:24454945:G:A	rs3818938	G	A	.	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	24454989	24454990	chr13:24454990:G:A	rs7338384	G	A	.	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr13	24664677	24664678	chr13:24664678:C:G	rs78132418	C	G	C	Sox1.mouse_HMG_2	10	1	-	7.348932810027195	3.2535887474720107	TGGAATTGCAGTCAT
chr13	24664680	24664681	chr13:24664681:C:T	rs9553406	C	T	T	Sox1.mouse_HMG_2	7	1	-	7.348932810027195	8.049987629568271	TGGAATTGCAGTCAT
chr13	24864411	24864412	chr13:24864412:C:T	rs17081286	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr13	25026355	25026356	chr13:25026356:C:T	rs79926283	C	T	.	Sox1.mouse_HMG_2	12	1	+	3.7967059176190694	-0.8758811860491854	ATGGTTAACATTCAT
chr13	25026356	25026357	chr13:25026357:A:G	rs74040908	A	G	.	Sox1.mouse_HMG_2	13	1	+	3.7967059176190694	-1.1494117701535789	ATGGTTAACATTCAT
chr13	25317136	25317137	chr13:25317137:A:G	rs3924002	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.118593217434111	-2.7028195517259603	ATAAACAGCATTCAG
chr13	25657410	25657411	chr13:25657411:G:A	rs2419322	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr13	25848679	25848680	chr13:25848680:G:A	rs9581464	G	A	g	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	25938290	25938291	chr13:25938291:G:A	rs7994495	G	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	26018535	26018536	chr13:26018536:G:A	rs9581506	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr13	26041723	26041724	chr13:26041724:C:A	rs184688215	C	A	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	26041759	26041760	chr13:26041760:A:G	rs538248335	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr13	26186464	26186465	chr13:26186465:G:T	rs9553759	G	T	g	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	26186501	26186502	chr13:26186502:T:C	rs958792808	T	C	t	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr13	26202997	26202998	chr13:26202998:T:G	rs564801	T	G	t	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	26494830	26494831	chr13:26494831:T:C	rs9553843	T	C	T	Sox1.mouse_HMG_2	0	1	+	6.727768514527034	6.993711708296466	TTGAATTTCACTCAA
chr13	26518831	26518832	chr13:26518832:G:A	rs562097683	G	A	G	Sox1.mouse_HMG_2	0	1	+	6.357879980388796	7.362116213024	GTGAATGTCATTTTT
chr13	26518848	26518849	chr13:26518849:T:C	rs17543373	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr13	26556378	26556379	chr13:26556379:A:G	rs4769504	A	G	A	Sox1.mouse_HMG_2	1	1	-	6.537423009795649	1.8934307023024157	ATGACTTTCCTTCAT
chr13	26590062	26590063	chr13:26590063:A:G	rs113972298	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	26761179	26761180	chr13:26761180:A:T	rs78935696	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr13	26899272	26899273	chr13:26899273:G:A	rs78018739	G	A	g	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr13	27121537	27121538	chr13:27121538:T:C	rs111761575	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr13	27183564	27183565	chr13:27183565:C:T	rs74528252	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr13	27183580	27183581	chr13:27183581:G:A	rs2281978	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr13	27204044	27204045	chr13:27204045:C:G	rs143160023	C	G	C	Sox1.mouse_HMG_2	2	1	-	7.90455731051814	2.5119403756717005	ATGACTTCAATTCAG
chr13	27622183	27622184	chr13:27622184:A:G	rs73432869	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr13	28032131	28032132	chr13:28032132:T:G	rs9512989	T	G	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr13	28139844	28139845	chr13:28139845:G:A	rs115999587	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr13	28337682	28337683	chr13:28337683:C:G	rs1408245	C	G	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr13	28373908	28373909	chr13:28373909:T:C	rs77433361	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr13	28394330	28394331	chr13:28394331:G:A	rs1555641	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr13	28423479	28423480	chr13:28423480:G:T	chr13:28423480:G:T	G	T	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr13	28468083	28468084	chr13:28468084:A:T	rs685598	A	T	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr13	28474690	28474691	chr13:28474691:A:C	rs57070158	A	C	A	Sox1.mouse_HMG_2	1	1	-	5.551745458392922	0.6032819718211128	CTGATTATCAGTCAC
chr13	28534349	28534350	chr13:28534350:A:G	rs9551485	A	G	a	Sox1.mouse_HMG_2	4	1	+	6.219198789349397	-0.6022139798106733	CTCAATACAATTCAT
chr13	28652591	28652592	chr13:28652592:A:G	rs1161131	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr13	28963833	28963834	chr13:28963834:C:G	rs118155935	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr13	28963857	28963858	chr13:28963858:A:T	rs595628	A	T	T	Sox1.mouse_HMG_2	13	1	+	3.805543433903882	0.6111798807455896	CACAATGGCATTCAC
chr13	29116843	29116844	chr13:29116844:G:A	rs73166425	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	29170169	29170170	chr13:29170170:G:A	rs7997835	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr13	29174929	29174930	chr13:29174930:C:G	rs989846	C	G	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	29372358	29372359	chr13:29372359:A:G	rs9578091	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	29439774	29439775	chr13:29439775:G:A	rs7995644	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr13	29460025	29460026	chr13:29460026:C:T	rs77241081	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.812026025832157	-0.8324006645498291	AGGTATATCATTCAT
chr13	29485553	29485554	chr13:29485554:G:A	rs73154417	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr13	29688506	29688507	chr13:29688507:T:A	rs9579461	T	A	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr13	29688507	29688508	chr13:29688508:T:A	rs7989914	T	A	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr13	29693956	29693957	chr13:29693957:C:T	rs6490422	C	T	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr13	29693981	29693982	chr13:29693982:G:T	rs6490423	G	T	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr13	29722042	29722043	chr13:29722043:G:A	rs73442127	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr13	29730427	29730428	chr13:29730428:C:T	rs2388242	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr13	29730451	29730452	chr13:29730452:G:A	rs12869874	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr13	29854996	29854997	chr13:29854997:T:A	rs278043	T	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr13	29925871	29925872	chr13:29925872:T:G	rs9508593	T	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr13	30064087	30064088	chr13:30064088:C:T	rs538015	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	30115389	30115390	chr13:30115390:T:C	rs532115912	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr13	30289950	30289951	chr13:30289951:G:A	rs9508696	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr13	30293990	30293991	chr13:30293991:T:C	rs9506282	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	30841935	30841936	chr13:30841936:T:C	rs34780238	T	C	T	Sox1.mouse_HMG_2	9	1	-	6.3975101240601635	-0.5112446552550568	TAGAATAGAATTCAT
chr13	30895527	30895528	chr13:30895528:C:T	rs17534004	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	30933589	30933590	chr13:30933590:G:T	rs1002036	G	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr13	31085653	31085654	chr13:31085654:G:A	rs932717	G	A	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr13	31254371	31254372	chr13:31254372:T:C	rs2313818	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr13	31378290	31378291	chr13:31378291:G:A	rs4941831	G	A	g	Sox1.mouse_HMG_2	8	1	-	2.400246083239428	-3.244180607142559	CTGAATAGCAAGCAT
chr13	31438042	31438043	chr13:31438043:T:G	rs1410812	T	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr13	31438070	31438071	chr13:31438071:A:G	rs716276	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.814454444524854	-2.094300334790367	TTGAATCACAGTTAT
chr13	31503026	31503027	chr13:31503027:T:C	rs676299	T	C	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr13	31906085	31906086	chr13:31906086:G:A	rs9532803	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr13	31966701	31966702	chr13:31966702:A:T	rs73165161	A	T	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr13	32046556	32046557	chr13:32046557:T:C	rs771664949	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr13	32046593	32046594	chr13:32046594:G:T	rs75033622	G	T	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr13	32166787	32166788	chr13:32166788:A:G	rs798978	A	G	A	Sox1.mouse_HMG_2	13	1	+	7.310466192101885	2.364348504329237	GTGATTTCCATTCAG
chr13	32197690	32197691	chr13:32197691:T:C	rs2252552	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr13	32298039	32298040	chr13:32298040:C:T	rs206127	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr13	32676519	32676520	chr13:32676520:A:G	rs77857399	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	33167880	33167881	chr13:33167881:T:C	rs2296390	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr13	33176382	33176383	chr13:33176383:A:G	rs797221	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr13	33192025	33192026	chr13:33192026:A:C	rs8002617	A	C	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr13	33229482	33229483	chr13:33229483:C:G	rs17078814	C	G	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	33352317	33352318	chr13:33352318:T:C	rs7996816	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr13	33381425	33381426	chr13:33381426:T:C	rs577460	T	C	t	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr13	33474401	33474402	chr13:33474402:G:C	rs9537595	G	C	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr13	33629923	33629924	chr13:33629924:C:T	rs9315232	C	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr13	33666236	33666237	chr13:33666237:A:G	rs9597922	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr13	33721777	33721778	chr13:33721778:C:T	rs76248579	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr13	33721778	33721779	chr13:33721779:G:A	rs2321481	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr13	33910415	33910416	chr13:33910416:A:G	rs116008564	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr13	34011788	34011789	chr13:34011789:T:C	rs74047109	T	C	C	Sox1.mouse_HMG_2	6	1	+	4.444612341413637	0.9332027734666651	GTGAATTGCAGGCAC
chr13	34063680	34063681	chr13:34063681:A:C	rs692254	A	C	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr13	34143397	34143398	chr13:34143398:C:G	rs1014611	C	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr13	34175118	34175119	chr13:34175119:T:C	rs1415245	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr13	34179801	34179802	chr13:34179802:T:G	rs1415240	T	G	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr13	34217506	34217507	chr13:34217507:A:G	rs7324308	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr13	34513753	34513754	chr13:34513754:C:T	rs2322115	C	T	C	Sox1.mouse_HMG_2	11	1	-	5.099745665548686	5.099745665548686	CTGAATAAAATGCAT
chr13	35406022	35406023	chr13:35406023:T:G	rs9544265	T	G	g	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr13	35479400	35479401	chr13:35479401:T:A	rs1461976	T	A	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	35569205	35569206	chr13:35569206:A:C	rs1777664	A	C	A	Sox1.mouse_HMG_2	13	1	+	7.5420670458816375	1.22135103675229	TTGAATGGCATGCAT
chr13	35748347	35748348	chr13:35748348:A:G	rs9545212	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr13	35748370	35748371	chr13:35748371:A:G	rs9545213	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.098103811040189	0.45411150354695684	ATAGATAACATTCAC
chr13	35768632	35768633	chr13:35768633:T:C	rs545204506	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr13	35836907	35836908	chr13:35836908:C:T	rs9285107	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr13	35923653	35923654	chr13:35923654:G:A	rs549587822	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr13	35923670	35923671	chr13:35923671:C:A	rs1171057	C	A	A	Sox1.mouse_HMG_2	8	1	+	3.8163105371466806	-1.033186278365418	CAGAATACCACTCAG
chr13	36147975	36147976	chr13:36147976:G:A	rs74788608	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr13	36275874	36275875	chr13:36275875:G:A	rs9547063	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr13	36418670	36418671	chr13:36418671:G:C	rs9566135	G	C	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr13	36731050	36731051	chr13:36731051:C:T	rs12584589	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	36750322	36750323	chr13:36750323:A:G	rs2769545	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr13	36766102	36766103	chr13:36766103:T:C	rs9603096	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr13	37156175	37156176	chr13:37156176:A:G	rs73177052	A	G	-	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr13	38012243	38012244	chr13:38012244:A:G	rs9532143	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr13	38051748	38051749	chr13:38051749:C:A	rs9576428	C	A	C	Sox1.mouse_HMG_2	0	1	-	3.1628454903959904	3.2322623235434014	GTGTCTAACATTCTC
chr13	38814224	38814225	chr13:38814225:G:A	rs11618193	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	38897663	38897664	chr13:38897664:C:T	rs9576637	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr13	38974158	38974159	chr13:38974159:G:T	rs9315643	G	T	G	Sox1.mouse_HMG_2	5	1	-	5.099514036563172	5.099514036563172	AAGAACAACATTCAC
chr13	39025454	39025455	chr13:39025455:G:A	rs9576705	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	39269476	39269477	chr13:39269477:A:C	rs2875295	A	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr13	39406030	39406031	chr13:39406031:G:A	rs1927200	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	39410653	39410654	chr13:39410654:C:T	rs73173499	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr13	39554513	39554514	chr13:39554514:T:C	rs1475177	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr13	40061800	40061801	chr13:40061801:A:G	rs144460411	A	G	A	Sox1.mouse_HMG_2	7	1	+	3.8262733623292693	3.1252185427881933	GTGAAGGACATTCTG
chr13	40144542	40144543	chr13:40144543:T:C	rs9315759	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr13	40192698	40192699	chr13:40192699:C:T	rs79212157	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.078884510177523	0.4344578197955366	AGAAATAGCATTCAG
chr13	40432180	40432181	chr13:40432181:A:C	rs118063606	A	C	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr13	40458770	40458771	chr13:40458771:A:G	rs144035061	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr13	41452749	41452750	chr13:41452750:G:A	rs1168446919	G	A	.	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr13	41643431	41643432	chr13:41643432:A:G	rs12874342	A	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr13	41837965	41837966	chr13:41837966:A:G	rs73185309	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr13	41877954	41877955	chr13:41877955:T:C	rs9566870	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr13	42065360	42065361	chr13:42065361:T:A	rs115757619	T	A	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr13	42076596	42076597	chr13:42076597:C:A	rs1170183	C	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr13	42394113	42394114	chr13:42394114:A:T	rs7992844	A	T	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr13	42763185	42763186	chr13:42763186:T:C	rs145890099	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	42784300	42784301	chr13:42784301:C:A	rs1853637	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr13	42877309	42877310	chr13:42877310:T:C	rs80092417	T	C	T	Sox1.mouse_HMG_2	10	1	+	3.8939976317768425	-2.9539439465034385	TTCAAAACCATTCAT
chr13	42972126	42972127	chr13:42972127:C:G	rs9567079	C	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr13	43023389	43023390	chr13:43023390:A:C	rs147930214	A	C	A	Sox1.mouse_HMG_2	11	1	-	4.517085142915188	-2.391669636400032	TTGAATCACACTCAC
chr13	43043617	43043618	chr13:43043618:G:T	rs9525725	G	T	G	Sox1.mouse_HMG_2	1	1	+	4.82217781087469	9.770641297446497	TGGAGTAACATTCAT
chr13	43269904	43269905	chr13:43269905:T:C	rs2289776	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr13	43574864	43574865	chr13:43574865:T:A	rs181445726	T	A	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr13	43649397	43649398	chr13:43649398:G:T	rs9533564	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr13	43788089	43788090	chr13:43788090:T:C	rs77634831	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	44299279	44299280	chr13:44299280:C:T	rs1175207	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr13	44759374	44759375	chr13:44759375:C:T	rs9533961	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	44819857	44819858	chr13:44819858:T:C	rs17066190	T	C	T	Sox1.mouse_HMG_2	10	1	-	3.557958846345017	7.653302908900201	TGGAATTCCAATCAT
chr13	44921855	44921856	chr13:44921856:A:G	rs75276039	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr13	45021411	45021412	chr13:45021412:A:G	rs12584828	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr13	45102985	45102986	chr13:45102986:T:C	rs74450420	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr13	45219385	45219386	chr13:45219386:T:G	rs74070129	T	G	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr13	45313734	45313735	chr13:45313735:G:C	rs7325355	G	C	g	Sox1.mouse_HMG_2	11	1	-	3.8650727516989107	3.8650727516989107	CAGAATGACATCCAT
chr13	45371184	45371185	chr13:45371185:T:A	chr13:45371185:T:A	T	A	.	Sox1.mouse_HMG_2	4	1	-	3.2427604465950894	-3.5786523225649836	GGGAATATCATTCCG
chr13	45371184	45371185	chr13:45371185:T:C	rs112094967	T	C	.	Sox1.mouse_HMG_2	4	1	-	3.2427604465950894	-3.5786523225649836	GGGAATATCATTCCG
chr13	45371206	45371207	chr13:45371207:C:A	chr13:45371207:C:A	C	A	.	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr13	45737560	45737561	chr13:45737561:A:G	rs73189698	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr13	45882791	45882792	chr13:45882792:A:G	rs78074044	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	45921594	45921595	chr13:45921595:A:G	rs77690107	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr13	46150030	46150031	chr13:46150031:C:T	rs17601737	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr13	46154595	46154596	chr13:46154596:T:C	rs150679681	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr13	46176745	46176746	chr13:46176746:T:C	rs17601960	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr13	46404002	46404003	chr13:46404003:G:A	rs146100422	G	A	g	Sox1.mouse_HMG_2	2	1	+	3.9878071522805087	-0.6575953807357074	ATGACTCTCAGTCTT
chr13	46552820	46552821	chr13:46552821:C:T	rs76346710	C	T	C	Sox1.mouse_HMG_2	7	1	+	7.128134977086507	6.667190523379402	GTAAATCCCATTCAT
chr13	46685385	46685386	chr13:46685386:C:T	rs147888680	C	T	c	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr13	46687834	46687835	chr13:46687835:T:C	rs842375	T	C	t	Sox1.mouse_HMG_2	6	1	-	3.0811827366502933	1.6410053147816548	ATTAATAGCAATCAT
chr13	46796507	46796508	chr13:46796508:C:T	rs75967092	C	T	c	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr13	47069620	47069621	chr13:47069621:G:T	rs11148028	G	T	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr13	47098754	47098755	chr13:47098755:T:C	rs377431084	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr13	47299413	47299414	chr13:47299414:T:C	rs149460072	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr13	47415356	47415357	chr13:47415357:C:T	rs9943957	C	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	47457578	47457579	chr13:47457579:T:C	rs10220222	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr13	47480403	47480404	chr13:47480404:A:G	rs9595720	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr13	47629048	47629049	chr13:47629049:A:G	rs61954664	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr13	47893731	47893732	chr13:47893732:A:C	rs9534856	A	C	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr13	48069361	48069362	chr13:48069362:G:A	rs9562802	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr13	48451436	48451437	chr13:48451437:T:C	rs776880528	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr13	48478753	48478754	chr13:48478754:T:G	rs4151628	T	G	T	Sox1.mouse_HMG_2	10	1	+	6.21622050340374	3.463622987678643	AAGAATTACATTTAG
chr13	48581233	48581234	chr13:48581234:G:A	rs149891440	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	48600881	48600882	chr13:48600882:A:G	rs9316407	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.820105932635556	-1.0886488466796647	TTGAATTTCAGTCCT
chr13	48602798	48602799	chr13:48602799:A:G	rs9595937	A	G	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr13	48661029	48661030	chr13:48661030:C:G	rs146501236	C	G	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr13	48739806	48739807	chr13:48739807:C:T	rs12584956	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr13	48946803	48946804	chr13:48946804:G:A	rs4341667	G	A	G	Sox1.mouse_HMG_2	12	1	-	11.819747476207086	7.147160372538832	ATGAATATAATTCAT
chr13	48946833	48946834	chr13:48946834:G:A	rs4341668	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr13	49411757	49411758	chr13:49411758:T:C	rs11619997	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	49536653	49536654	chr13:49536654:G:C	rs1047276553	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr13	50160567	50160568	chr13:50160568:C:T	rs2066604	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr13	50375811	50375812	chr13:50375812:G:T	rs12864797	G	T	G	Sox1.mouse_HMG_2	7	1	+	7.752505121698842	7.595930766864742	ATGAATAGCAGTCCT
chr13	50389227	50389228	chr13:50389228:G:C	rs9316495	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	50486672	50486673	chr13:50486673:G:C	rs149872	G	C	C	Sox1.mouse_HMG_2	4	1	-	6.715042761511096	2.275691060217946	CTGACTGACATTCCT
chr13	50617997	50617998	chr13:50617998:T:C	rs7327141	T	C	T	Sox1.mouse_HMG_2	0	1	-	10.741547836985843	9.737311604350642	AGGAATGCCATTCAT
chr13	50644610	50644611	chr13:50644611:G:A	rs11841196	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr13	50700108	50700109	chr13:50700109:G:A	rs74519657	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr13	50706553	50706554	chr13:50706554:G:A	rs797503	G	A	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr13	50745817	50745818	chr13:50745818:T:C	rs139168771	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr13	51246916	51246917	chr13:51246917:T:C	rs544614098	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr13	51479116	51479117	chr13:51479117:G:A	rs7984158	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr13	51783845	51783846	chr13:51783846:C:T	chr13:51783846:C:T	C	T	C	Sox1.mouse_HMG_2	0	1	+	7.677511632281502	7.4115684385120675	CTGAATTGCATTCCA
chr13	51957902	51957903	chr13:51957903:T:C	rs752570	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr13	51995314	51995315	chr13:51995315:T:C	rs113115720	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.562104909011989	0.6159872212393407	ATGAGTTCCAGTCAG
chr13	52118579	52118580	chr13:52118580:G:A	rs9535870	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr13	52456309	52456310	chr13:52456310:T:C	rs111494601	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr13	52738010	52738011	chr13:52738011:C:T	rs60555177	C	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr13	52995721	52995722	chr13:52995722:A:G	rs9316602	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr13	53499089	53499090	chr13:53499090:C:T	rs9536438	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr13	53700864	53700865	chr13:53700865:A:G	rs2785814	A	G	g	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr13	54033280	54033281	chr13:54033281:T:C	rs9536604	T	C	C	Sox1.mouse_HMG_2	3	1	-	5.165123215960631	-1.7436315633545894	AGGACTGCCATTCTT
chr13	54350374	54350375	chr13:54350375:A:C	rs2785945	A	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr13	54750777	54750778	chr13:54750778:A:G	rs117886594	A	G	A	Sox1.mouse_HMG_2	7	1	+	8.6315331163781	7.930478296837021	CTGAACAACATTCAA
chr13	54913957	54913958	chr13:54913958:T:A	rs73204607	T	A	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr13	55145127	55145128	chr13:55145128:C:A	rs3120846	C	A	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr13	55777832	55777833	chr13:55777833:G:A	rs78134626	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr13	56217502	56217503	chr13:56217503:T:A	rs1512648	T	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr13	56508447	56508448	chr13:56508448:G:A	rs7985742	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr13	56508456	56508457	chr13:56508457:T:G	rs7986793	T	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr13	57046681	57046682	chr13:57046682:G:C	rs140413726	G	C	G	Sox1.mouse_HMG_2	11	1	-	4.03638035416913	4.03638035416913	ATGAATATAATCCAC
chr13	57450524	57450525	chr13:57450525:G:A	rs2167070	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr13	57717191	57717192	chr13:57717192:A:G	rs9527687	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr13	58093768	58093769	chr13:58093769:A:G	rs534151	A	G	A	Sox1.mouse_HMG_2	7	1	-	4.920004480403339	5.380948934110445	TTGAAGATCAGTCAG
chr13	58297686	58297687	chr13:58297687:A:G	rs10492603	A	G	A	Sox1.mouse_HMG_2	14	1	-	8.403054237584438	7.528441894861703	ATGAATTTCAGTTAT
chr13	58738787	58738788	chr13:58738788:T:C	rs9527868	T	C	t	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	59230227	59230228	chr13:59230228:C:T	rs9634890	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.1096070316293605	-1.535795501386858	CTGAATAACAATGAT
chr13	59243776	59243777	chr13:59243777:C:G	rs1327930	C	G	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr13	59330933	59330934	chr13:59330934:C:G	rs9597978	C	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr13	59354286	59354287	chr13:59354287:G:T	rs9538394	G	T	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr13	59368614	59368615	chr13:59368615:A:C	chr13:59368615:A:C	A	C	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr13	59375034	59375035	chr13:59375035:A:G	rs9538397	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr13	59496928	59496929	chr13:59496929:C:T	rs4886167	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr13	59585930	59585931	chr13:59585931:G:A	rs506806	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr13	60105156	60105157	chr13:60105157:A:G	rs61958589	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr13	60282439	60282440	chr13:60282440:T:C	rs141944649	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr13	60441943	60441944	chr13:60441944:A:G	rs9528139	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr13	60572689	60572690	chr13:60572690:C:A	chr13:60572690:C:A	C	A	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr13	60583684	60583685	chr13:60583685:C:T	rs189356706	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	60663047	60663048	chr13:60663048:T:C	rs2323004	T	C	t	Sox1.mouse_HMG_2	0	1	-	4.1116923918693535	3.107456159234151	AGGACTCTCATTCAC
chr13	60766615	60766616	chr13:60766616:T:C	rs1399141	T	C	C	Sox1.mouse_HMG_2	0	1	-	5.648824406124542	4.644588173489341	ATCAATTATATTCAT
chr13	60931996	60931997	chr13:60931997:A:G	rs2047903	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	61046546	61046547	chr13:61046547:C:A	rs1514552	C	A	C	Sox1.mouse_HMG_2	12	1	+	6.172555412745298	-0.7278932377210648	AAGACTAGCAGTCAC
chr13	61526569	61526570	chr13:61526570:G:A	rs73488661	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr13	61564019	61564020	chr13:61564020:A:G	rs9598307	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr13	62119603	62119604	chr13:62119604:G:T	rs73207764	G	T	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr13	62149722	62149723	chr13:62149723:C:T	rs7317553	C	T	c	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	62311611	62311612	chr13:62311612:A:G	rs9317236	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.858814310630399	-2.0499404686848206	ATGAATTTCATTATC
chr13	63208968	63208969	chr13:63208969:C:T	rs9598556	C	T	C	Sox1.mouse_HMG_2	13	1	-	7.50621266527873	12.452330353051378	GTGAATAACAGTCGA
chr13	63208969	63208970	chr13:63208970:G:A	rs298790	G	A	G	Sox1.mouse_HMG_2	12	1	-	7.50621266527873	2.8336255616104746	GTGAATAACAGTCGA
chr13	63234661	63234662	chr13:63234662:G:A	rs112003020	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr13	63294923	63294924	chr13:63294924:A:C	rs2134898	A	C	C	Sox1.mouse_HMG_2	5	1	-	8.353048583123863	1.4442938038086428	TTAAATTACAGTCAT
chr13	64130636	64130637	chr13:64130637:G:T	rs9571111	G	T	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr13	64513515	64513516	chr13:64513516:G:T	rs2095605	G	T	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr13	64842753	64842754	chr13:64842754:C:A	rs9528830	C	A	c	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr13	65011580	65011581	chr13:65011581:G:A	rs115569079	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr13	65417773	65417774	chr13:65417774:C:A	rs9598973	C	A	A	Sox1.mouse_HMG_2	8	1	+	5.150829548849206	0.3013327333371071	TTGACTTACATTAAA
chr13	65913359	65913360	chr13:65913360:A:T	rs73506822	A	T	A	Sox1.mouse_HMG_2	13	1	+	3.6755816486782003	0.48121809551990785	AGGAAATACATTCAG
chr13	65913380	65913381	chr13:65913381:C:T	rs114809627	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr13	66064689	66064690	chr13:66064690:A:G	rs3850037	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	66074462	66074463	chr13:66074463:T:C	rs74841201	T	C	C	Sox1.mouse_HMG_2	6	1	-	7.956276088344924	6.516098666476284	AAGAATATCATTCTC
chr13	66092407	66092408	chr13:66092408:T:G	rs78703108	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr13	66190230	66190231	chr13:66190231:G:C	rs9599087	G	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	66464259	66464260	chr13:66464260:C:T	rs1470370	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr13	66528595	66528596	chr13:66528596:G:A	rs9540792	G	A	A	Sox1.mouse_HMG_2	2	1	+	6.113374301991332	1.4679717689751146	TGGAATATCATTTAT
chr13	66536893	66536894	chr13:66536894:G:C	chr13:66536894:G:C	G	C	G	Sox1.mouse_HMG_2	2	1	+	9.354235333917616	3.9616183990711757	CAGAATTGCATTCAA
chr13	66821535	66821536	chr13:66821536:T:C	rs9599152	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr13	67283970	67283971	chr13:67283971:T:C	rs2991416	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr13	67588910	67588911	chr13:67588911:C:T	rs149445097	C	T	c	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr13	68274329	68274330	chr13:68274330:A:G	rs9599296	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr13	68519138	68519139	chr13:68519139:A:G	rs659636	A	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr13	68669518	68669519	chr13:68669519:C:T	rs4884799	C	T	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr13	68747055	68747056	chr13:68747056:A:G	rs9541525	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.987540808884863	-2.921213970430357	CAGAATAACATGCAA
chr13	68929235	68929236	chr13:68929236:C:T	rs1541200	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr13	68929238	68929239	chr13:68929239:G:C	rs116014683	G	C	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr13	69007823	69007824	chr13:69007824:G:C	rs9529490	G	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr13	69142231	69142232	chr13:69142232:A:G	rs4884831	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	70392931	70392932	chr13:70392932:A:G	rs1856999	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr13	70437078	70437079	chr13:70437079:A:C	rs76494976	A	C	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr13	70536843	70536844	chr13:70536844:T:C	rs75473080	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr13	70722736	70722737	chr13:70722737:A:G	rs2249209	A	G	A	Sox1.mouse_HMG_2	6	1	+	6.250893055183868	4.810715633315228	CAAAATAACATTCAA
chr13	71521016	71521017	chr13:71521017:A:G	rs35257173	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr13	71712842	71712843	chr13:71712843:T:C	rs9572769	T	C	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr13	71922450	71922451	chr13:71922451:A:G	rs9542777	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	71922486	71922487	chr13:71922487:C:A	rs191351864	C	A	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr13	71922487	71922488	chr13:71922488:T:C	rs2612818	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr13	72113262	72113263	chr13:72113263:G:A	rs112153869	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr13	72304509	72304510	chr13:72304510:C:A	rs340578	C	A	A	Sox1.mouse_HMG_2	8	1	+	4.656417014603222	-0.19307980090887644	AAGAAAAACATTCAA
chr13	72435282	72435283	chr13:72435283:C:T	rs9572978	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr13	72471763	72471764	chr13:72471764:T:C	rs9542962	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr13	72514528	72514529	chr13:72514529:G:A	rs6420343	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	72557216	72557217	chr13:72557217:A:T	rs7333883	A	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr13	72621077	72621078	chr13:72621078:C:T	rs17089630	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr13	72806121	72806122	chr13:72806122:A:T	rs111606378	A	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr13	72924808	72924809	chr13:72924809:G:A	rs2325482	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	72969567	72969568	chr13:72969568:G:A	rs117981701	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.6066155644509785	-2.037811125931006	CAGCATTTCATTCAT
chr13	73039570	73039571	chr13:73039571:C:T	rs60395541	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr13	73039790	73039791	chr13:73039791:T:C	rs55761542	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.7631899192850793	-3.1455648600301402	CAGCATTGCATTCAT
chr13	73063264	73063265	chr13:73063265:C:T	rs533852586	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr13	73119690	73119691	chr13:73119691:A:C	rs2483182	A	C	C	Sox1.mouse_HMG_2	9	1	+	9.613882454143942	2.705127674828721	GTGAATAACATGCAT
chr13	73216211	73216212	chr13:73216212:A:G	rs191960954	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr13	73255161	73255162	chr13:73255162:T:C	rs4459445	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr13	73663047	73663048	chr13:73663048:G:T	rs7337251	G	T	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr13	74114583	74114584	chr13:74114584:T:G	rs7995760	T	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr13	74336825	74336826	chr13:74336826:A:G	rs7332421	A	G	A	Sox1.mouse_HMG_2	14	1	-	4.275491770169337	3.400879427446601	AAGAATTTCATCCAT
chr13	74336845	74336846	chr13:74336846:C:T	rs7332588	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	74632802	74632803	chr13:74632803:A:C	rs9543727	A	C	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	74640677	74640678	chr13:74640678:T:C	rs4885215	T	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr13	74678524	74678525	chr13:74678525:G:A	rs8000550	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr13	74678561	74678562	chr13:74678562:A:C	rs75483607	A	C	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	75469181	75469182	chr13:75469182:A:G	rs7335576	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	76267363	76267364	chr13:76267364:T:G	rs905867	T	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr13	76330873	76330874	chr13:76330874:A:T	rs17066099	A	T	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr13	76496985	76496986	chr13:76496986:A:G	rs1758916	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr13	76497032	76497033	chr13:76497033:A:G	rs1758917	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	76622680	76622681	chr13:76622681:T:C	rs7318168	T	C	T	Sox1.mouse_HMG_2	14	1	-	3.6508910159835715	3.815532263878519	AGGAATAGCGTTCAA
chr13	76677043	76677044	chr13:76677044:C:G	rs777027315	C	G	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr13	76774114	76774115	chr13:76774115:T:A	rs1418768	T	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr13	76791596	76791597	chr13:76791597:A:C	rs904136577	A	C	A	Sox1.mouse_HMG_2	13	1	+	4.727991267585122	-1.5927247415442245	TTGACTTTCTTTCAC
chr13	76791613	76791614	chr13:76791614:G:A	rs191497113	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr13	76917278	76917279	chr13:76917279:A:G	rs117367004	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr13	77009553	77009554	chr13:77009554:G:A	rs8000325	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr13	77043090	77043091	chr13:77043091:G:A	rs77722183	G	A	-	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr13	77047044	77047045	chr13:77047045:A:G	rs60723031	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr13	77330025	77330026	chr13:77330026:G:A	rs115736965	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr13	77509486	77509487	chr13:77509487:T:C	chr13:77509487:T:C	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr13	77510386	77510387	chr13:77510387:G:A	rs537335826	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr13	77537668	77537669	chr13:77537669:C:T	rs35410533	C	T	C	Sox1.mouse_HMG_2	1	1	+	5.7637679466305975	10.407760254123831	TCGAATGCCATTCTG
chr13	77807466	77807467	chr13:77807467:A:C	rs914912	A	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr13	77917915	77917916	chr13:77917916:T:G	rs12720164	T	G	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr13	77976112	77976113	chr13:77976113:G:A	rs12720100	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr13	78033673	78033674	chr13:78033674:G:A	rs4885513	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr13	78369182	78369183	chr13:78369183:G:A	rs75119373	G	A	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	78436540	78436541	chr13:78436541:T:C	rs2329082	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr13	78446822	78446823	chr13:78446823:G:A	rs7982030	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr13	78535209	78535210	chr13:78535210:G:A	rs9601075	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr13	78935476	78935477	chr13:78935477:A:G	rs7999998	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.7390343437700393	-3.1697204355451793	CTGAATGGCGTTCTC
chr13	79223003	79223004	chr13:79223004:A:G	rs7327440	A	G	a	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr13	79412324	79412325	chr13:79412325:T:C	rs7350686	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr13	80118675	80118676	chr13:80118676:G:A	rs8001641	G	A	G	Sox1.mouse_HMG_2	7	1	-	2.643802981077493	2.182858527370387	CTGAAAACCATCCAT
chr13	80300145	80300146	chr13:80300146:G:A	rs1755254	G	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr13	80562382	80562383	chr13:80562383:G:A	rs7983488	G	A	G	Sox1.mouse_HMG_2	0	1	-	5.583697862626868	5.317754668857435	CCCAATTCCATTCAT
chr13	80633460	80633461	chr13:80633461:T:G	chr13:80633461:T:G	T	G	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr13	80653330	80653331	chr13:80653331:T:G	rs17073080	T	G	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr13	80755681	80755682	chr13:80755682:C:T	rs2794249	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr13	80779789	80779790	chr13:80779790:A:G	chr13:80779790:A:G	A	G	A	Sox1.mouse_HMG_2	13	1	+	4.165750738504436	-0.7803669492682123	ATGACTAACAGGCAA
chr13	80783606	80783607	chr13:80783607:A:G	rs1853300	A	G	G	Sox1.mouse_HMG_2	0	1	-	6.031223445344509	6.297166639113941	TGGAATTGCAGTCAA
chr13	80871824	80871825	chr13:80871825:T:C	rs17073466	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	82155240	82155241	chr13:82155241:T:A	rs914416	T	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	82357152	82357153	chr13:82357153:G:A	rs2329225	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr13	82878710	82878711	chr13:82878711:C:T	rs79892247	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr13	83379128	83379129	chr13:83379129:T:C	rs7984736	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr13	83513302	83513303	chr13:83513303:A:G	rs4393445	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	83730725	83730726	chr13:83730726:A:G	rs17077186	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr13	83845421	83845422	chr13:83845422:T:C	rs79043647	T	C	T	Sox1.mouse_HMG_2	4	1	-	8.518517067022897	1.697104297862822	CTGAATAGCATTCCA
chr13	84513334	84513335	chr13:84513335:T:C	rs9546733	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr13	84648399	84648400	chr13:84648400:A:G	rs4884236	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr13	84776587	84776588	chr13:84776588:A:C	rs17379243	A	C	a	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr13	84896780	84896781	chr13:84896781:T:C	rs2368311	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr13	85000126	85000127	chr13:85000127:T:A	rs55944096	T	A	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr13	85277898	85277899	chr13:85277899:A:T	rs2497400	A	T	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr13	85332549	85332550	chr13:85332550:A:G	rs9319141	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr13	85401139	85401140	chr13:85401140:T:C	rs9602744	T	C	t	Sox1.mouse_HMG_2	3	1	-	6.500234792112463	-0.40851998720275834	TGGAATTCCAGTCAG
chr13	85529159	85529160	chr13:85529160:A:G	rs117583583	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	85798780	85798781	chr13:85798781:C:T	rs993170322	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	85963548	85963549	chr13:85963549:T:C	rs9602896	T	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr13	85963575	85963576	chr13:85963576:A:G	rs9602897	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr13	86122084	86122085	chr13:86122085:T:C	rs7321459	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr13	86438549	86438550	chr13:86438550:C:T	rs9558274	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.381924868539584	5.082979688080659	ATTAATAGCATTTAC
chr13	86581853	86581854	chr13:86581854:A:G	rs12429024	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr13	86822187	86822188	chr13:86822188:C:T	rs1414621	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr13	86826227	86826228	chr13:86826228:C:G	rs9515993	C	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr13	86895077	86895078	chr13:86895078:G:C	rs7329884	G	C	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr13	86895078	86895079	chr13:86895079:C:T	rs7324982	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr13	87302550	87302551	chr13:87302551:G:C	rs73563720	G	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr13	87331252	87331253	chr13:87331253:C:A	rs6491324	C	A	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr13	87404069	87404070	chr13:87404070:A:G	rs4098589	A	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr13	88086142	88086143	chr13:88086143:G:A	rs72644716	G	A	g	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr13	88164722	88164723	chr13:88164723:T:C	rs36118027	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr13	88513236	88513237	chr13:88513237:A:G	rs9587692	A	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr13	88553616	88553617	chr13:88553617:T:A	chr13:88553617:T:A	T	A	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr13	89829918	89829919	chr13:89829919:G:A	rs7334791	G	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr13	89969818	89969819	chr13:89969819:C:A	rs9583756	C	A	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr13	89988479	89988480	chr13:89988480:T:C	rs34234059	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr13	90543253	90543254	chr13:90543254:G:C	rs9523016	G	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	90751006	90751007	chr13:90751007:A:T	rs58630888	A	T	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr13	90867665	90867666	chr13:90867666:A:G	rs7333643	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	91631077	91631078	chr13:91631078:A:G	rs10492614	A	G	A	Sox1.mouse_HMG_2	1	1	-	6.17519269078633	1.5312003832930965	ATGAATTTCAGTGAT
chr13	91669226	91669227	chr13:91669227:T:C	rs55924226	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr13	91745870	91745871	chr13:91745871:G:A	rs525661	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.189917806808512	5.194154039443714	GAGACTTCCATTCTC
chr13	91745884	91745885	chr13:91745885:C:G	rs16946681	C	G	C	Sox1.mouse_HMG_2	14	1	+	4.189917806808512	3.9114620327435095	GAGACTTCCATTCTC
chr13	91745894	91745895	chr13:91745895:A:T	rs77363980	A	T	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr13	92196903	92196904	chr13:92196904:T:G	rs146048104	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.440089163311117	-0.5083743232606929	CTGAATGACATGCTC
chr13	92280751	92280752	chr13:92280752:A:G	rs9516033	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr13	92575534	92575535	chr13:92575535:G:A	rs9589581	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr13	92584796	92584797	chr13:92584797:T:C	rs9523720	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	92701838	92701839	chr13:92701839:G:T	rs9523782	G	T	T	Sox1.mouse_HMG_2	8	1	-	8.422232653858352	3.572735838346252	ATGAATTCCATTTTT
chr13	93425975	93425976	chr13:93425976:A:C	rs12874982	A	C	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr13	93620163	93620164	chr13:93620164:G:T	rs4119694	G	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr13	94146061	94146062	chr13:94146062:G:A	rs495705	G	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr13	94169742	94169743	chr13:94169743:T:C	rs9589922	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr13	94304345	94304346	chr13:94304346:G:A	rs72647622	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	94304383	94304384	chr13:94304384:C:T	rs9556362	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr13	94506250	94506251	chr13:94506251:C:T	rs2389132	C	T	t	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr13	94641938	94641939	chr13:94641939:G:T	rs8002846	G	T	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr13	94657451	94657452	chr13:94657452:G:A	rs1924077	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr13	94657489	94657490	chr13:94657490:C:T	rs1924078	C	T	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr13	94687542	94687543	chr13:94687543:T:A	rs9561664	T	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr13	95184194	95184195	chr13:95184195:C:T	rs34295536	C	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	95314449	95314450	chr13:95314450:C:T	rs9302061	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr13	95387925	95387926	chr13:95387926:T:A	rs10508012	T	A	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr13	95406578	95406579	chr13:95406579:A:G	rs1538335	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.276655377392529	-1.6320994019226926	CTGAAAAACATTTAT
chr13	95406588	95406589	chr13:95406589:G:A	rs1538334	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr13	95434225	95434226	chr13:95434226:C:T	rs7333503	C	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr13	95499097	95499098	chr13:95499098:G:A	rs9524984	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr13	95846290	95846291	chr13:95846291:A:G	rs9670089	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr13	96385334	96385335	chr13:96385335:A:G	rs9516673	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr13	97126050	97126051	chr13:97126051:A:G	rs558703624	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.041954849868257	-2.866799929446961	ATGGATATGATTCAT
chr13	97278635	97278636	chr13:97278636:A:G	rs6491347	A	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr13	97354760	97354761	chr13:97354761:A:G	rs6491350	A	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr13	97640972	97640973	chr13:97640973:G:A	rs7328844	G	A	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr13	97798209	97798210	chr13:97798210:A:G	rs7325265	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr13	97977944	97977945	chr13:97977945:G:C	chr13:97977945:G:C	G	C	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr13	98224963	98224964	chr13:98224964:A:G	rs3923333	A	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr13	98393274	98393275	chr13:98393275:T:G	rs189911251	T	G	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr13	98483948	98483949	chr13:98483949:C:G	rs149199341	C	G	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr13	98508845	98508846	chr13:98508846:C:T	rs77369220	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr13	98741841	98741842	chr13:98741842:T:C	rs72650327	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr13	98748227	98748228	chr13:98748228:C:A	rs12586112	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr13	98919716	98919717	chr13:98919717:G:A	rs4444196	G	A	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr13	98940340	98940341	chr13:98940341:G:A	rs7985813	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr13	98979549	98979550	chr13:98979550:G:C	rs76925271	G	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr13	99015706	99015707	chr13:99015707:G:A	rs7330438	G	A	A	Sox1.mouse_HMG_2	0	1	+	2.90355670828811	3.9077929409233114	GTGACAAGCAGTCAC
chr13	99015727	99015728	chr13:99015728:T:C	rs4772168	T	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr13	99027592	99027593	chr13:99027593:T:C	rs2000342	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.889216488618681	-1.9321962805413895	CTCAATATGATTCAT
chr13	99141093	99141094	chr13:99141094:C:A	rs553111344	C	A	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr13	99141094	99141095	chr13:99141095:G:A	rs113705207	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr13	99522511	99522512	chr13:99522512:G:A	rs2031423	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr13	99522548	99522549	chr13:99522549:C:T	rs150819343	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	99664013	99664014	chr13:99664014:C:T	rs66731839	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	99731848	99731849	chr13:99731849:T:A	rs2806279	T	A	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr13	100022997	100022998	chr13:100022998:G:A	rs61972451	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr13	100211594	100211595	chr13:100211595:G:A	rs542995408	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr13	100805291	100805292	chr13:100805292:A:G	rs4771375	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr13	100981969	100981970	chr13:100981970:G:C	rs76941131	G	C	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr13	101010297	101010298	chr13:101010298:T:A	rs17676958	T	A	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr13	101049565	101049566	chr13:101049566:A:G	rs3751405	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	101157317	101157318	chr13:101157318:T:G	rs592885	T	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr13	101203750	101203751	chr13:101203751:T:A	rs1289783	T	A	A	Sox1.mouse_HMG_2	13	1	-	4.137125409306735	0.9427618561484431	TTGACTGTCATTAAC
chr13	101211192	101211193	chr13:101211193:A:G	rs2181789	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr13	101584095	101584096	chr13:101584096:G:C	rs9513922	G	C	a	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr13	101949782	101949783	chr13:101949783:T:G	rs727424	T	G	T	Sox1.mouse_HMG_2	7	1	+	6.255336148466023	6.411910503300124	CTCAATCTCATTCAT
chr13	101985719	101985720	chr13:101985720:T:G	rs4097137	T	G	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr13	102234849	102234850	chr13:102234850:T:C	rs4772455	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr13	102238078	102238079	chr13:102238079:T:C	rs58604229	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr13	102299192	102299193	chr13:102299193:C:T	rs9300732	C	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr13	102572572	102572573	chr13:102572573:G:A	rs6491694	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr13	102701082	102701083	chr13:102701083:A:G	chr13:102701083:A:G	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	102929104	102929105	chr13:102929105:A:T	rs11843333	A	T	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr13	102929106	102929107	chr13:102929107:G:A	rs783449	G	A	G	Sox1.mouse_HMG_2	14	1	-	6.054545293939689	6.929157636662425	CTGACTCACATTCTC
chr13	102977612	102977613	chr13:102977613:G:A	rs967472	G	A	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	103130823	103130824	chr13:103130824:C:T	rs115770148	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr13	103130831	103130832	chr13:103130832:T:C	rs2699335	T	C	C	Sox1.mouse_HMG_2	1	1	+	5.934098996985432	1.2901066894921978	ATGATTAGCAGTCAA
chr13	103284604	103284605	chr13:103284605:C:T	rs991381010	C	T	C	Sox1.mouse_HMG_2	4	1	+	4.550837439394605	0.11148573810145501	CTGGCTTTCATTCAA
chr13	103540123	103540124	chr13:103540124:G:A	rs74652228	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr13	103571228	103571229	chr13:103571229:T:A	rs9558117	T	A	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr13	103621823	103621824	chr13:103621824:A:T	rs4771461	A	T	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr13	103885017	103885018	chr13:103885018:G:T	rs1360969	G	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr13	103976781	103976782	chr13:103976782:C:A	rs2791257	C	A	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr13	104571873	104571874	chr13:104571874:G:A	rs735721	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr13	104571907	104571908	chr13:104571908:C:T	chr13:104571908:C:T	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr13	105139286	105139287	chr13:105139287:T:C	rs3935937	T	C	T	Sox1.mouse_HMG_2	10	1	-	4.665008555061414	8.760352617616599	CAGAATAGCAATCAT
chr13	105167761	105167762	chr13:105167762:C:T	rs78617698	C	T	C	Sox1.mouse_HMG_2	8	1	+	8.655686576632615	3.011259886250627	GTGAATAACATTTTT
chr13	105262779	105262780	chr13:105262780:T:G	rs4290350	T	G	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr13	105471769	105471770	chr13:105471770:A:G	rs548977399	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr13	105634268	105634269	chr13:105634269:A:G	rs1549055	A	G	A	Sox1.mouse_HMG_2	14	1	-	7.4260025756012755	6.551390232878539	GTAAATTTCAGTCAT
chr13	105827075	105827076	chr13:105827076:G:T	rs72663805	G	T	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr13	105848991	105848992	chr13:105848992:C:T	rs9586995	C	T	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr13	106123414	106123415	chr13:106123415:T:C	rs7328133	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	106288387	106288388	chr13:106288388:T:G	rs16968395	T	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr13	107127967	107127968	chr13:107127968:G:A	rs1927745	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr13	107498716	107498717	chr13:107498717:G:A	rs28733781	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr13	107563232	107563233	chr13:107563233:T:C	rs7332082	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr13	107730793	107730794	chr13:107730794:A:G	rs3905064	A	G	A	Sox1.mouse_HMG_2	7	1	+	3.8838872853281634	3.1828324657870892	ATGAGTAACAGTCTC
chr13	107731016	107731017	chr13:107731017:A:G	rs117504210	A	G	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr13	107731070	107731071	chr13:107731071:C:T	rs114271190	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr13	107770820	107770821	chr13:107770821:A:C	rs16971086	A	C	A	Sox1.mouse_HMG_2	9	1	+	5.767980100941141	-1.1407746783740795	CTGACTTACATTTTT
chr13	107811444	107811445	chr13:107811445:G:T	rs35322116	G	T	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr13	108176862	108176863	chr13:108176863:T:A	rs931000355	T	A	T	Sox1.mouse_HMG_2	0	1	-	4.572052407716541	3.6372330082287494	ATGAATTTCCTTCTG
chr13	108353001	108353002	chr13:108353002:T:A	rs9583233	T	A	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr13	108560755	108560756	chr13:108560756:G:A	rs12161850	G	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr13	108618329	108618330	chr13:108618330:C:T	rs7321600	C	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr13	108621593	108621594	chr13:108621594:G:A	rs58550112	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr13	108678341	108678342	chr13:108678342:A:G	rs9583276	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr13	108758584	108758585	chr13:108758585:T:C	rs4772995	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr13	108902946	108902947	chr13:108902947:A:G	rs58958752	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr13	108957094	108957095	chr13:108957095:A:G	rs9583313	A	G	A	Sox1.mouse_HMG_2	1	1	-	7.6017747129798865	2.957782405486651	ATGAATTTCATACAA
chr13	109778420	109778421	chr13:109778421:G:C	rs7997595	G	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr13	109918701	109918702	chr13:109918702:G:C	rs76948695	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.318828535904133	-2.5816201145622313	GTAAATTCCATTCCT
chr13	109918712	109918713	chr13:109918713:A:G	rs9559674	A	G	G	Sox1.mouse_HMG_2	1	1	-	4.318828535904133	-0.3251637715891017	GTAAATTCCATTCCT
chr13	110090642	110090643	chr13:110090643:T:C	rs72652054	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr13	110095121	110095122	chr13:110095122:T:C	rs74124137	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	110095151	110095152	chr13:110095152:G:A	rs4773122	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr13	110103484	110103485	chr13:110103485:T:C	rs16854	T	C	C	Sox1.mouse_HMG_2	6	1	-	4.091408646782073	2.6512312249134338	ATGAAAAGCATTTAG
chr13	110134620	110134621	chr13:110134621:T:C	rs9521618	T	C	T	Sox1.mouse_HMG_2	9	1	-	8.632351264098865	1.7235964847836458	ATGAATTACATTAAG
chr13	110247696	110247697	chr13:110247697:C:T	rs61963326	C	T	C	Sox1.mouse_HMG_2	8	1	+	7.6465217042376645	2.0020950138556763	GTGAATTCCATTCCA
chr13	110247701	110247702	chr13:110247702:C:G	rs7338566	C	G	G	Sox1.mouse_HMG_2	13	1	+	7.6465217042376645	9.021120025594364	GTGAATTCCATTCCA
chr13	110305251	110305252	chr13:110305252:A:C	rs80285502	A	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	110399612	110399613	chr13:110399613:C:A	rs7982993	C	A	C	Sox1.mouse_HMG_2	12	1	+	2.7217355153859835	-4.178713135080381	ATGCATAGCATTCCC
chr13	110583381	110583382	chr13:110583382:C:T	rs9521849	C	T	C	Sox1.mouse_HMG_2	12	1	-	4.885764775552034	4.885764775552034	GTGAATTGCATTGTT
chr13	110771552	110771553	chr13:110771553:G:A	rs895244313	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr13	110838503	110838504	chr13:110838504:A:G	rs7334345	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr13	110913774	110913775	chr13:110913775:T:C	rs9588296	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr13	111127038	111127039	chr13:111127039:A:G	rs73633230	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	111212541	111212542	chr13:111212542:T:C	rs3783088	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr13	111240046	111240047	chr13:111240047:C:T	rs11619224	C	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	111401263	111401264	chr13:111401264:A:G	rs9301506	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr13	111589369	111589370	chr13:111589370:G:A	rs4773396	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr13	111630394	111630395	chr13:111630395:G:A	rs9522319	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr13	111639709	111639710	chr13:111639710:T:C	rs2000124	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr13	111952475	111952476	chr13:111952476:C:T	rs942033	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	112348288	112348289	chr13:112348289:C:T	rs9577340	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr13	112481539	112481540	chr13:112481540:T:A	rs79218138	T	A	T	Sox1.mouse_HMG_2	5	1	+	12.121573452935241	5.2128186736200215	CTGAATTGCATTCTT
chr13	112647026	112647027	chr13:112647027:T:C	rs4907732	T	C	C	Sox1.mouse_HMG_2	6	1	-	3.987540808884863	2.5473633870162242	CAGAACAACATTCAA
chr13	112980195	112980196	chr13:112980196:G:C	rs7316954	G	C	C	Sox1.mouse_HMG_2	12	1	-	11.522401465807995	4.621952815341632	CTGAATGGCATTCTT
chr13	113027186	113027187	chr13:113027187:T:C	rs148359654	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr13	113138075	113138076	chr13:113138076:G:C	rs3211764	G	C	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr13	113193165	113193166	chr13:113193166:A:G	rs80023213	A	G	g	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr13	113298316	113298317	chr13:113298317:C:T	rs113679570	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.846271949146341	-1.7981547412356458	GTGAATTTCGTTCTC
chr13	113353406	113353407	chr13:113353407:C:T	rs9324233	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr13	113417652	113417653	chr13:113417653:G:T	rs9549779	G	T	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr13	113418256	113418257	chr13:113418257:C:T	rs4329817	C	T	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr13	113474797	113474798	chr13:113474798:C:T	rs2257438	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr13	113484306	113484307	chr13:113484307:A:G	rs2260800	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr13	113486979	113486980	chr13:113486980:G:A	rs2260894	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr13	113522977	113522978	chr13:113522978:T:C	rs2770040	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr13	113537809	113537810	chr13:113537810:A:G	rs2259573	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr13	113541565	113541566	chr13:113541566:T:C	rs143361829	T	C	.	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr13	113545535	113545536	chr13:113545536:T:C	rs189669108	T	C	.	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr13	113854438	113854439	chr13:113854439:C:G	rs58308451	C	G	c	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr13	113854446	113854447	chr13:113854447:T:C	rs60003099	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.845299346715017	-1.0634554326002026	ATGACTTCCATGCAG
chr13	113992635	113992636	chr13:113992636:G:C	rs3737052	G	C	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr13	114278761	114278762	chr13:114278762:T:G	rs78190825	T	G	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr14	16097487	16097488	chr14:16097488:A:G	rs925128271	A	G	.	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr14	16097501	16097502	chr14:16097502:A:G	rs1389983240	A	G	.	Sox1.mouse_HMG_2	13	1	+	9.391252013498205	4.445134325725557	TTAAATTCCATTCAA
chr14	16097982	16097983	chr14:16097983:A:C	rs1212023664	A	C	.	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr14	16098649	16098650	chr14:16098650:C:T	rs1051258091	C	T	.	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	16098685	16098686	chr14:16098686:A:G	rs1033182279	A	G	.	Sox1.mouse_HMG_2	9	1	+	3.641030967221322	-3.2677238120938994	TTCAATTCCATTCCT
chr14	16098706	16098707	chr14:16098707:C:T	rs921120653	C	T	.	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr14	16098857	16098858	chr14:16098858:C:G	rs912402354	C	G	.	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	16103919	16103920	chr14:16103920:A:G	chr14:16103920:A:G	A	G	.	Sox1.mouse_HMG_2	9	1	+	3.641030967221322	-3.2677238120938994	TTCAATTCCATTCCT
chr14	19918868	19918869	chr14:19918869:G:T	rs67930303	G	T	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr14	19949381	19949382	chr14:19949382:T:C	rs2792114	T	C	-	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr14	20584254	20584255	chr14:20584255:T:A	rs35818240	T	A	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr14	20610498	20610499	chr14:20610499:A:T	rs59734947	A	T	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	20658246	20658247	chr14:20658247:T:C	rs12372906	T	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr14	20714640	20714641	chr14:20714641:G:A	rs11628398	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr14	20981153	20981154	chr14:20981154:A:G	rs2783788	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr14	20981175	20981176	chr14:20981176:G:A	rs2783787	G	A	A	Sox1.mouse_HMG_2	12	1	-	12.529732582387096	7.857145478718841	CTGAATAGCAGTCAC
chr14	20999996	20999997	chr14:20999997:T:G	rs2149666	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr14	21103619	21103620	chr14:21103620:C:T	rs142474306	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr14	21199597	21199598	chr14:21199598:T:C	rs7156447	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr14	21308001	21308002	chr14:21308002:C:T	rs117538734	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr14	21868581	21868582	chr14:21868582:T:C	rs17255063	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	21868937	21868938	chr14:21868938:G:C	rs909075	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr14	21883828	21883829	chr14:21883829:A:G	rs7140909	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.951243344369757	-1.9575114349454625	TTTAATACCATTCTG
chr14	21912649	21912650	chr14:21912650:T:C	rs2320071	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr14	21923362	21923363	chr14:21923363:A:G	rs723880	A	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr14	22268636	22268637	chr14:22268637:C:A	rs12881142	C	A	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr14	22593868	22593869	chr14:22593869:T:C	rs61498819	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr14	22597267	22597268	chr14:22597268:T:C	rs10150488	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.304469576585697	-2.6042852027295234	ATCACTTGCAGTCAG
chr14	22668964	22668965	chr14:22668965:T:G	rs72679853	T	G	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr14	22700184	22700185	chr14:22700185:A:G	rs2331716	A	G	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	22773770	22773771	chr14:22773771:A:G	rs11568422	A	G	.	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr14	22976326	22976327	chr14:22976327:G:T	rs10134257	G	T	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr14	23125186	23125187	chr14:23125187:C:T	rs8010847	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr14	23406541	23406542	chr14:23406542:C:A	rs74881223	C	A	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr14	23434742	23434743	chr14:23434743:C:G	rs2239577	C	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr14	23589283	23589284	chr14:23589284:T:G	rs78712226	T	G	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr14	23640585	23640586	chr14:23640586:G:A	rs17095396	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr14	23656676	23656677	chr14:23656677:C:T	rs222626	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	23695185	23695186	chr14:23695186:G:C	rs117092223	G	C	g	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr14	23862132	23862133	chr14:23862133:T:G	rs72690382	T	G	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr14	23987518	23987519	chr14:23987519:C:T	rs8006402	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	24035043	24035044	chr14:24035044:A:C	rs62000814	A	C	-	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr14	24188019	24188020	chr14:24188020:C:T	rs2295977	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr14	24332416	24332417	chr14:24332417:C:G	rs118074190	C	G	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	24332428	24332429	chr14:24332429:A:C	rs1950502	A	C	C	Sox1.mouse_HMG_2	3	1	+	3.3221882234736384	-3.586566555841582	TTGACTTGGAGTCAC
chr14	24365656	24365657	chr14:24365657:A:G	rs140733082	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.098103811040189	-1.810650968275031	ATAAATAACATCCAC
chr14	24389460	24389461	chr14:24389461:A:G	rs116126265	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr14	24443548	24443549	chr14:24443549:G:C	rs4982917	G	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr14	24597521	24597522	chr14:24597522:A:T	rs34037718	A	T	-	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr14	24694682	24694683	chr14:24694683:A:G	rs68146491	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr14	24706775	24706776	chr14:24706776:C:T	rs74875195	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr14	24905529	24905530	chr14:24905530:A:G	rs17185369	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr14	24992613	24992614	chr14:24992614:A:G	chr14:24992614:A:G	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.994131230867555	1.3501389233743213	GTGACGTCCATTCAT
chr14	25042473	25042474	chr14:25042474:G:A	rs11626436	G	A	A	Sox1.mouse_HMG_2	7	1	+	4.603310258615653	5.304365078156729	GTCAATAGCATTTAG
chr14	25087294	25087295	chr14:25087295:C:T	rs17185649	C	T	c	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr14	25091465	25091466	chr14:25091466:A:G	rs112934577	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr14	25463796	25463797	chr14:25463797:T:C	rs28632143	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr14	25469645	25469646	chr14:25469646:G:A	rs8015189	G	A	G	Sox1.mouse_HMG_2	3	1	+	7.020636915487562	13.929391694802781	GTGGATGACATTCAG
chr14	25501454	25501455	chr14:25501455:A:G	rs1955894	A	G	G	Sox1.mouse_HMG_2	13	1	+	7.970158617928967	3.02404093015632	ATAAATTACAGTCAA
chr14	25576633	25576634	chr14:25576634:C:T	rs1951072	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.998188047018546	1.3537613566365598	TGAAATAACATTCAT
chr14	26019442	26019443	chr14:26019443:T:C	rs862945	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr14	26204573	26204574	chr14:26204574:A:G	rs990385725	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr14	26729718	26729719	chr14:26729719:G:A	rs72673139	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr14	26810036	26810037	chr14:26810037:C:T	rs73607872	C	T	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr14	26857487	26857488	chr14:26857488:G:A	rs10483325	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr14	26967147	26967148	chr14:26967148:G:C	rs548866406	G	C	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr14	26967169	26967170	chr14:26967170:C:G	chr14:26967170:C:G	C	G	C	Sox1.mouse_HMG_2	2	1	+	6.098794602917722	11.491411537764158	GTCAATGCCATTCTT
chr14	27259476	27259477	chr14:27259477:A:G	rs542487708	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr14	27390449	27390450	chr14:27390450:G:A	rs61975878	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	28057907	28057908	chr14:28057908:T:A	rs141689729	T	A	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr14	28515685	28515686	chr14:28515686:C:T	rs118071175	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	28515705	28515706	chr14:28515706:A:G	rs981090	A	G	G	Sox1.mouse_HMG_2	6	1	-	4.999773768734756	1.4883642007877855	GTGACTTACAGTTAC
chr14	28591475	28591476	chr14:28591476:C:T	rs12885201	C	T	C	Sox1.mouse_HMG_2	1	1	-	3.1233587132896603	3.4278298923682358	GGGAAATGCATTCAT
chr14	28776686	28776687	chr14:28776687:T:C	rs17882286	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.9786426022337924	-0.6653497052594441	ATAAAGTACATTCAG
chr14	28780519	28780520	chr14:28780520:T:C	rs34558305	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr14	29492242	29492243	chr14:29492243:G:T	rs185110551	G	T	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr14	29531475	29531476	chr14:29531476:A:G	rs1191548	A	G	A	Sox1.mouse_HMG_2	14	1	-	3.101300902780504	2.226688560057768	CTGAATAACAACCAT
chr14	30078319	30078320	chr14:30078320:T:C	rs6571332	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr14	30273761	30273762	chr14:30273762:G:A	rs138356190	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr14	30354841	30354842	chr14:30354842:G:T	rs186438984	G	T	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr14	30872736	30872737	chr14:30872737:A:T	rs3759777	A	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	30896846	30896847	chr14:30896847:G:C	rs59048919	G	C	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr14	31505661	31505662	chr14:31505662:G:C	rs17586057	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr14	31751232	31751233	chr14:31751233:A:G	rs764335518	A	G	a	Sox1.mouse_HMG_2	13	1	+	5.388641517283784	0.442523829511135	TTGAAATGCAGTCAT
chr14	31968596	31968597	chr14:31968597:T:A	rs7148296	T	A	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	31988476	31988477	chr14:31988477:G:T	rs1952969	G	T	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr14	32003398	32003399	chr14:32003399:T:G	rs1013252	T	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr14	32023713	32023714	chr14:32023714:A:G	rs115791193	A	G	a	Sox1.mouse_HMG_2	0	1	-	6.08969633682486	6.355639530594292	TTGAAATACAGTCAT
chr14	32023714	32023715	chr14:32023715:T:G	rs184754449	T	G	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr14	32217349	32217350	chr14:32217350:T:C	rs74912227	T	C	t	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr14	32233609	32233610	chr14:32233610:G:C	rs996879939	G	C	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	32252083	32252084	chr14:32252084:G:A	rs558273315	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.5678161750813384	-1.077586357934879	GTGAACTTCATTCTG
chr14	32252110	32252111	chr14:32252111:G:T	chr14:32252111:G:T	G	T	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr14	32331288	32331289	chr14:32331289:A:G	chr14:32331289:A:G	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr14	32366978	32366979	chr14:32366979:T:C	rs145206418	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr14	32475439	32475440	chr14:32475440:T:C	rs79378860	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	32693849	32693850	chr14:32693850:G:C	rs11156760	G	C	C	Sox1.mouse_HMG_2	13	1	-	6.069065958057429	7.443664279414128	CTGAATTACAGTCCC
chr14	32812175	32812176	chr14:32812176:G:A	rs61981393	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr14	32942444	32942445	chr14:32942445:C:T	rs4981169	C	T	T	Sox1.mouse_HMG_2	8	1	+	3.5610375999283983	-2.083389090453588	CTGAATTACATATAC
chr14	32986750	32986751	chr14:32986751:G:A	rs545137065	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr14	33139664	33139665	chr14:33139665:A:G	rs12887270	A	G	A	Sox1.mouse_HMG_2	13	1	-	3.491941228298119	0.36558877232706427	ATGGCTACCATTCTG
chr14	33151153	33151154	chr14:33151154:A:G	chr14:33151154:A:G	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr14	33257230	33257231	chr14:33257231:G:C	rs243297	G	C	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	33310746	33310747	chr14:33310747:G:C	rs1440201	G	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr14	33331234	33331235	chr14:33331235:T:A	rs4981184	T	A	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr14	33332985	33332986	chr14:33332986:G:A	rs2133891	G	A	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	33341088	33341089	chr14:33341089:G:A	rs8009681	G	A	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr14	33916942	33916943	chr14:33916943:A:G	rs34206322	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr14	33926893	33926894	chr14:33926894:C:T	rs10137361	C	T	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr14	33940052	33940053	chr14:33940053:G:T	rs1032014	G	T	G	Sox1.mouse_HMG_2	7	1	-	1.8300038393896985	2.226688560057768	CTGAATACCAAGCAC
chr14	33944962	33944963	chr14:33944963:T:C	rs1680689	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	33944974	33944975	chr14:33944975:A:G	rs1769617	A	G	G	Sox1.mouse_HMG_2	4	1	+	4.396183480900002	-2.4252292882600703	CCAAATGTCATTCAC
chr14	34000674	34000675	chr14:34000675:C:T	rs900360	C	T	c	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr14	34000687	34000688	chr14:34000688:G:C	rs72666284	G	C	g	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr14	34105181	34105182	chr14:34105182:G:C	rs55976711	G	C	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr14	34119358	34119359	chr14:34119359:G:A	rs184838010	G	A	c	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr14	34364487	34364488	chr14:34364488:G:A	rs77164080	G	A	G	Sox1.mouse_HMG_2	8	1	-	8.150279697241299	2.5058530068593123	GTGACTAACATTTAA
chr14	34388341	34388342	chr14:34388342:G:C	rs11156843	G	C	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr14	34461624	34461625	chr14:34461625:A:C	rs564750074	A	C	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr14	34461639	34461640	chr14:34461640:C:T	rs74046057	C	T	T	Sox1.mouse_HMG_2	4	1	+	5.731021004297616	1.2916693030044648	CTGACTAGAATTCTT
chr14	34619793	34619794	chr14:34619794:T:C	rs115035391	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr14	35150609	35150610	chr14:35150610:A:G	rs11156875	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr14	35198347	35198348	chr14:35198348:C:T	rs17535082	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr14	35370029	35370030	chr14:35370030:G:C	rs2145623	G	C	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr14	35540277	35540278	chr14:35540278:G:A	rs28708787	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr14	35660764	35660765	chr14:35660765:A:C	rs4982303	A	C	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr14	36816150	36816151	chr14:36816151:T:C	rs848080	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.976929924837375	-1.8710116534429062	TGGAATTACATTTAG
chr14	36942105	36942106	chr14:36942106:A:G	rs72667327	A	G	A	Sox1.mouse_HMG_2	8	1	-	4.617776342146299	10.262203032528285	ATGAATAATAGTCTA
chr14	37039199	37039200	chr14:37039200:G:T	rs9888611	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	37039200	37039201	chr14:37039201:C:T	rs9888610	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr14	37047800	37047801	chr14:37047801:G:A	rs10136755	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr14	37060694	37060695	chr14:37060695:T:C	rs117609222	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr14	37791786	37791787	chr14:37791787:T:C	rs4901274	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	37887847	37887848	chr14:37887848:G:A	rs143935351	G	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr14	38098566	38098567	chr14:38098567:G:A	rs77705351	G	A	G	Sox1.mouse_HMG_2	5	1	-	4.407910549488398	11.31666532880362	ATGAACGGCATTCTC
chr14	38099642	38099643	chr14:38099643:G:A	rs12147337	G	A	A	Sox1.mouse_HMG_2	4	1	-	2.535955717498861	-1.9033959837942898	CTGACTGCCATCCTT
chr14	38536867	38536868	chr14:38536868:A:G	rs2415484	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr14	38880570	38880571	chr14:38880571:G:A	rs9783655	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.215477412477761	-0.45710969119049405	GTGGCTTTCATTCAA
chr14	38944588	38944589	chr14:38944589:C:A	rs7155906	C	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	39113490	39113491	chr14:39113491:G:C	rs2415533	G	C	G	Sox1.mouse_HMG_2	14	1	-	3.5013947040898934	3.222938930024891	GTGAATACAATTGAC
chr14	39614330	39614331	chr14:39614331:G:A	rs11846873	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr14	39614489	39614490	chr14:39614490:A:G	rs75540097	A	G	A	Sox1.mouse_HMG_2	14	1	-	9.429127743129387	8.554515400406652	AGGAATACCAGTCAT
chr14	40034082	40034083	chr14:40034083:C:A	rs7160758	C	A	A	Sox1.mouse_HMG_2	6	1	-	9.454707940808463	10.053879927935705	CTAAATGACATTCAA
chr14	40034100	40034101	chr14:40034101:C:T	rs7160773	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	41063372	41063373	chr14:41063373:A:G	rs1954469	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr14	41171185	41171186	chr14:41171186:T:C	rs4143953	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr14	41384641	41384642	chr14:41384642:T:C	rs12435856	T	C	.	Sox1.mouse_HMG_2	13	1	-	6.266277791275673	1.3201601035030248	GAGAATTGCAGTCAA
chr14	41600757	41600758	chr14:41600758:A:G	rs76233485	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr14	41859334	41859335	chr14:41859335:A:G	rs17181783	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr14	42373600	42373601	chr14:42373601:C:T	rs34669230	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	42405997	42405998	chr14:42405998:A:T	rs61992686	A	T	a	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr14	42994080	42994081	chr14:42994081:C:G	rs34787221	C	G	C	Sox1.mouse_HMG_2	2	1	-	7.314214748638342	1.921597813791903	CTGACTTACATTCCT
chr14	43004051	43004052	chr14:43004052:C:T	rs75218415	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr14	43174485	43174486	chr14:43174486:A:G	rs35703406	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr14	43560063	43560064	chr14:43560064:G:C	rs114293833	G	C	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	43595372	43595373	chr14:43595373:C:T	rs61998644	C	T	c	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr14	44162318	44162319	chr14:44162319:C:T	rs7149136	C	T	C	Sox1.mouse_HMG_2	14	1	+	10.769168434945945	11.64378077766868	ATAAATTCCATTCAC
chr14	44195142	44195143	chr14:44195143:C:T	rs1959210	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr14	44405245	44405246	chr14:44405246:A:T	rs17627207	A	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr14	44640527	44640528	chr14:44640528:G:T	rs35386598	G	T	T	Sox1.mouse_HMG_2	0	1	-	5.2128186736200215	5.88169487933838	CTGAATTGCATCCTT
chr14	44804817	44804818	chr14:44804818:C:T	rs28507671	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr14	44845416	44845417	chr14:44845417:T:G	rs17115648	T	G	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr14	44847698	44847699	chr14:44847699:T:C	rs76452624	T	C	T	Sox1.mouse_HMG_2	0	1	-	3.0868266428836173	2.082590410248416	ATGACTCTCACTCAT
chr14	44942637	44942638	chr14:44942638:T:C	rs28695721	T	C	C	Sox1.mouse_HMG_2	12	1	+	3.7877157409716613	8.460302844639916	CTGAATACCAATTAG
chr14	44981275	44981276	chr14:44981276:G:A	rs78592865	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr14	45519537	45519538	chr14:45519538:C:T	rs61997870	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	45679114	45679115	chr14:45679115:T:A	rs1906801	T	A	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr14	47194251	47194252	chr14:47194252:C:G	rs572401114	C	G	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr14	47269587	47269588	chr14:47269588:A:G	rs7148978	A	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr14	47286608	47286609	chr14:47286609:T:C	rs72680299	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	47305363	47305364	chr14:47305364:T:G	rs2297927	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr14	47332224	47332225	chr14:47332225:A:G	rs78648414	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.756467543467047	-1.1522872358481724	CTGAAAGACAGTCAT
chr14	47332233	47332234	chr14:47332234:T:A	rs12885665	T	A	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr14	47388941	47388942	chr14:47388942:A:C	rs8021759	A	C	A	Sox1.mouse_HMG_2	1	1	-	11.246211012225096	6.297747525653288	TTGAATGACAGTCAG
chr14	47730400	47730401	chr14:47730401:T:C	rs75522475	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr14	47865775	47865776	chr14:47865776:G:A	rs1950761	G	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr14	48173907	48173908	chr14:48173908:T:C	rs41320346	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr14	48616367	48616368	chr14:48616368:T:C	rs2153316	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr14	48709681	48709682	chr14:48709682:G:A	rs76708856	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr14	48725201	48725202	chr14:48725202:C:T	rs761479596	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr14	48725202	48725203	chr14:48725203:G:A	rs939657323	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr14	48771893	48771894	chr14:48771894:T:C	rs61708304	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr14	48901799	48901800	chr14:48901800:A:G	rs6572524	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	48944190	48944191	chr14:48944191:A:G	rs75266690	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.473934599725694	-0.17005770776753992	GTGGCTGACATTCAA
chr14	48971124	48971125	chr14:48971125:C:A	rs145230415	C	A	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr14	49073467	49073468	chr14:49073468:T:C	rs4318126	T	C	C	Sox1.mouse_HMG_2	11	1	+	7.780966080634874	0.8722113013196543	GAGACTTACATTCAC
chr14	49898441	49898442	chr14:49898442:T:C	rs3100872	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	50038492	50038493	chr14:50038493:T:C	rs2281530	T	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	50038536	50038537	chr14:50038537:C:T	rs77800967	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr14	50213418	50213419	chr14:50213419:C:T	rs10142902	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	50347693	50347694	chr14:50347694:T:A	rs77674933	T	A	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	50498726	50498727	chr14:50498727:G:A	rs17791680	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr14	50608134	50608135	chr14:50608135:A:G	rs35446323	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr14	50964692	50964693	chr14:50964693:C:T	rs10145802	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr14	51011289	51011290	chr14:51011290:C:A	rs10137411	C	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr14	51020635	51020636	chr14:51020636:C:T	rs946623	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr14	51029385	51029386	chr14:51029386:T:G	rs8013051	T	G	T	Sox1.mouse_HMG_2	4	1	-	6.933397896928332	4.551336829061412	CTGAATGGCATGCAC
chr14	51058455	51058456	chr14:51058456:C:A	rs12588907	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr14	51073453	51073454	chr14:51073454:A:G	rs11622355	A	G	A	Sox1.mouse_HMG_2	6	1	+	3.020441715368786	1.580264293500147	TGGAATACCATACAA
chr14	51317600	51317601	chr14:51317601:C:T	rs142880997	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	51317640	51317641	chr14:51317641:C:A	rs146090463	C	A	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr14	51401307	51401308	chr14:51401308:A:G	rs139293988	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr14	51458204	51458205	chr14:51458205:C:T	rs12889345	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr14	51484882	51484883	chr14:51484883:A:G	rs10148397	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	51637850	51637851	chr14:51637851:T:G	rs1467522	T	G	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr14	51749697	51749698	chr14:51749698:G:A	rs138724071	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr14	51789443	51789444	chr14:51789444:C:A	rs35970981	C	A	C	Sox1.mouse_HMG_2	13	1	-	5.147720054806307	6.899474189420662	TGGAATACCATTCGG
chr14	51807377	51807378	chr14:51807378:G:C	rs7157830	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.14034610395806	-2.7601025465083042	ATGATTTAAATTCAC
chr14	51822125	51822126	chr14:51822126:T:A	rs4243582	T	A	T	Sox1.mouse_HMG_2	4	1	-	3.773022028213631	-3.048390740946441	TTGCATTCCATTTAT
chr14	51837811	51837812	chr14:51837812:A:G	rs78507467	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr14	52043069	52043070	chr14:52043070:A:G	rs3818187	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.6830696298062886	-3.2256851495089323	CGGCATAACATTCAA
chr14	52052092	52052093	chr14:52052093:G:A	rs730532	G	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr14	52128442	52128443	chr14:52128443:T:C	rs111843919	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr14	52155442	52155443	chr14:52155443:G:A	rs28414819	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	52155488	52155489	chr14:52155489:T:C	rs1075977	T	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr14	52266933	52266934	chr14:52266934:C:T	rs33998702	C	T	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr14	52266980	52266981	chr14:52266981:C:T	rs803011	C	T	t	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr14	52365262	52365263	chr14:52365263:G:A	rs12432564	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr14	52514682	52514683	chr14:52514683:G:T	rs3742533	G	T	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr14	52577506	52577507	chr14:52577507:C:T	rs2357800	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr14	52628103	52628104	chr14:52628104:T:C	rs1007895	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	52640366	52640367	chr14:52640367:T:C	rs7647	T	C	c	Sox1.mouse_HMG_2	10	1	+	4.340639246212853	-2.5073023320674284	ATGACTAGCATACTT
chr14	52686408	52686409	chr14:52686409:A:G	rs10483615	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	52686452	52686453	chr14:52686453:C:T	rs35800716	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr14	52792286	52792287	chr14:52792287:G:T	rs141307580	G	T	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr14	52881821	52881822	chr14:52881822:T:G	rs62003529	T	G	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr14	52920117	52920118	chr14:52920118:G:C	rs8009633	G	C	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr14	53033178	53033179	chr14:53033179:A:G	rs17126068	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr14	53193844	53193845	chr14:53193845:A:C	rs2552400	A	C	C	Sox1.mouse_HMG_2	6	1	+	13.474880738560893	9.122465735872526	ATGAATATCATTCTT
chr14	53225918	53225919	chr14:53225919:A:G	rs72690138	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	53296455	53296456	chr14:53296456:G:A	rs4901391	G	A	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr14	53541364	53541365	chr14:53541365:A:G	rs4354847	A	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr14	53629114	53629115	chr14:53629115:G:A	rs210375	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr14	53744093	53744094	chr14:53744094:G:A	rs12894632	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr14	53865409	53865410	chr14:53865410:T:C	rs28647576	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr14	53930455	53930456	chr14:53930456:G:A	rs11157992	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr14	54122435	54122436	chr14:54122436:G:A	rs12590923	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr14	54172443	54172444	chr14:54172444:C:T	rs55765131	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	54365479	54365480	chr14:54365480:C:T	rs17727002	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr14	54566047	54566048	chr14:54566048:C:T	rs533465550	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr14	54737938	54737939	chr14:54737939:C:G	rs17127854	C	G	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr14	54764257	54764258	chr14:54764258:G:A	rs117518151	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr14	54798960	54798961	chr14:54798961:G:C	rs8021325	G	C	G	Sox1.mouse_HMG_2	11	1	-	2.253217369177975	2.253217369177975	CTGATTAACATCCAC
chr14	54890811	54890812	chr14:54890812:A:G	rs114920961	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	55028050	55028051	chr14:55028051:G:A	rs28420819	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr14	55029412	55029413	chr14:55029413:G:C	rs1212641	G	C	C	Sox1.mouse_HMG_2	2	1	+	5.39694764613264	0.0043307112862015495	TTGAATTGCAGTGAT
chr14	55069687	55069688	chr14:55069688:T:G	rs17128145	T	G	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr14	55194144	55194145	chr14:55194145:C:A	rs66476033	C	A	C	Sox1.mouse_HMG_2	0	1	+	5.202571413806553	5.871447619524912	CTGAATTACAGGCAG
chr14	55201451	55201452	chr14:55201452:G:T	rs56098354	G	T	G	Sox1.mouse_HMG_2	6	1	+	8.112380338524074	8.711552325651317	CTGCATGCCATTCAT
chr14	55483267	55483268	chr14:55483268:G:A	rs67254745	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr14	55706003	55706004	chr14:55706004:A:G	rs12323476	A	G	G	Sox1.mouse_HMG_2	6	1	+	7.276652518198701	5.836475096330061	CTGAATACCATTTTA
chr14	55937052	55937053	chr14:55937053:T:G	rs78708002	T	G	T	Sox1.mouse_HMG_2	6	1	-	2.9220935748963335	-1.4303214277920324	ATGAGAAACATTCAC
chr14	55952009	55952010	chr14:55952010:C:T	rs870886	C	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr14	55967080	55967081	chr14:55967081:A:G	rs1188146	A	G	.	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr14	55976954	55976955	chr14:55976955:T:G	rs1203011	T	G	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr14	56056342	56056343	chr14:56056343:G:T	rs2928875	G	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr14	56092915	56092916	chr14:56092916:A:G	rs75583628	A	G	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr14	56236421	56236422	chr14:56236422:C:T	rs12895666	C	T	C	Sox1.mouse_HMG_2	2	1	-	6.433546402971221	1.7881438699550039	TGGAATCTCATTCAT
chr14	56236440	56236441	chr14:56236441:A:G	rs12895653	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr14	56378411	56378412	chr14:56378412:G:A	rs12587823	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr14	56453488	56453489	chr14:56453489:A:G	rs1307538	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr14	56800209	56800210	chr14:56800210:G:A	rs198240	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr14	57010118	57010119	chr14:57010119:G:A	rs12323453	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.279118113689731	-0.3934689899785243	CTGCATCACATTCAA
chr14	57179968	57179969	chr14:57179969:C:T	rs2346219	C	T	c	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr14	57362230	57362231	chr14:57362231:T:A	rs116446946	T	A	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr14	57382506	57382507	chr14:57382507:T:C	rs78084898	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.479223870551921	-0.46689381722072676	GTGACTAACAGACAT
chr14	57716351	57716352	chr14:57716352:T:C	rs7156904	T	C	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr14	57747972	57747973	chr14:57747973:T:C	rs12431701	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	57987225	57987226	chr14:57987226:A:C	rs17094108	A	C	A	Sox1.mouse_HMG_2	6	1	-	4.092259399437538	3.4930874123102935	TGGACTTGCAGTCAC
chr14	58048792	58048793	chr14:58048793:T:C	rs10483694	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr14	58055667	58055668	chr14:58055668:C:G	chr14:58055668:C:G	C	G	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr14	58501377	58501378	chr14:58501378:A:G	rs1329438331	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr14	58678804	58678805	chr14:58678805:T:C	rs2116490	T	C	T	Sox1.mouse_HMG_2	13	1	+	4.028760628788445	0.9024081728173909	GTGAATTCCATCCTG
chr14	58722624	58722625	chr14:58722625:G:C	rs35334405	G	C	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr14	58815580	58815581	chr14:58815581:A:G	rs1365796	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr14	59024067	59024068	chr14:59024068:A:G	rs1956192	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	59308843	59308844	chr14:59308844:G:A	rs17255610	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr14	59333978	59333979	chr14:59333979:G:A	chr14:59333979:G:A	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr14	59333979	59333980	chr14:59333980:A:T	chr14:59333980:A:T	A	T	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr14	59424238	59424239	chr14:59424239:C:G	rs1266212	C	G	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr14	59634248	59634249	chr14:59634249:C:T	rs4898998	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	59678014	59678015	chr14:59678015:C:A	rs1952039	C	A	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr14	60245796	60245797	chr14:60245797:G:C	rs8018093	G	C	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr14	60310764	60310765	chr14:60310765:A:T	rs1998225	A	T	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr14	60396917	60396918	chr14:60396918:T:C	rs1254292	T	C	t	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	60420255	60420256	chr14:60420256:C:A	rs1254304	C	A	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr14	60625227	60625228	chr14:60625228:C:T	rs78220468	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr14	60632542	60632543	chr14:60632543:G:A	rs7153263	G	A	g	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr14	60632547	60632548	chr14:60632548:C:T	rs113124640	C	T	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr14	61106340	61106341	chr14:61106341:G:A	rs35652546	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	61146454	61146455	chr14:61146455:T:C	rs117580362	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	61154461	61154462	chr14:61154462:G:T	rs7159153	G	T	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr14	61154665	61154666	chr14:61154666:T:A	rs10140040	T	A	T	Sox1.mouse_HMG_2	11	1	+	4.336304971204276	-2.5724498081109446	AAGAATTTCAATCAT
chr14	61329919	61329920	chr14:61329920:C:T	rs72728008	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr14	61366657	61366658	chr14:61366658:A:T	rs4899039	A	T	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr14	61408172	61408173	chr14:61408173:G:A	rs111897966	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr14	61438782	61438783	chr14:61438783:A:G	rs7141969	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr14	61472852	61472853	chr14:61472853:T:C	rs11621877	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr14	61475650	61475651	chr14:61475651:C:T	rs1951958	C	T	T	Sox1.mouse_HMG_2	8	1	+	2.6466547833483696	-2.9977719070336177	GGGAATAGCATGCAA
chr14	61483024	61483025	chr14:61483025:A:G	rs3783776	A	G	A	Sox1.mouse_HMG_2	5	1	-	8.707494092651535	1.798739313336315	CTGACTGGCAGTCAC
chr14	61491571	61491572	chr14:61491572:C:T	rs17098542	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr14	61512494	61512495	chr14:61512495:C:T	rs59857866	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.8377499394465895	1.1933232490646022	GGGAATTGCATTCTT
chr14	61539335	61539336	chr14:61539336:A:G	rs117498462	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	61616273	61616274	chr14:61616274:T:A	rs2253980	T	A	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	61642512	61642513	chr14:61642513:C:T	rs10140085	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.297865969364723	-0.3475365636514938	CTGACTCACATTTAG
chr14	61642532	61642533	chr14:61642533:G:A	rs372141334	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr14	61719866	61719867	chr14:61719867:T:C	rs1165378662	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr14	61839032	61839033	chr14:61839033:C:T	rs72716763	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr14	61839080	61839081	chr14:61839081:G:A	rs72716765	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr14	62055192	62055193	chr14:62055193:G:T	chr14:62055193:G:T	G	T	G	Sox1.mouse_HMG_2	10	1	+	5.08926819681816	7.841865712543258	GTAAATTACAGTCTT
chr14	62359689	62359690	chr14:62359690:C:T	rs4306424	C	T	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	62675270	62675271	chr14:62675271:C:T	rs8009247	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	62762551	62762552	chr14:62762552:C:A	rs116023426	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr14	62956735	62956736	chr14:62956736:T:G	rs112040717	T	G	T	Sox1.mouse_HMG_2	12	1	+	5.350524435967717	3.122662889169608	ACGAATTGCATTTAA
chr14	63563327	63563328	chr14:63563328:C:G	rs1255742	C	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	63677106	63677107	chr14:63677107:A:G	rs7154718	A	G	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	64147429	64147430	chr14:64147430:A:T	rs116873188	A	T	A	Sox1.mouse_HMG_2	1	1	-	3.5678161750813384	-1.0761761324118957	GTGAACTTCATTCTG
chr14	64293468	64293469	chr14:64293469:T:A	rs75655276	T	A	T	Sox1.mouse_HMG_2	3	1	-	6.357879980388796	-0.5508747989264223	GTGAATGTCATTTTT
chr14	64440864	64440865	chr14:64440865:C:T	rs80318983	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	64663244	64663245	chr14:64663245:A:G	rs733127	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr14	64846133	64846134	chr14:64846134:T:C	rs72726237	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	65074662	65074663	chr14:65074663:G:A	rs7156617	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr14	65319990	65319991	chr14:65319991:C:T	rs1462017414	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr14	65636544	65636545	chr14:65636545:G:A	rs7148401	G	A	G	Sox1.mouse_HMG_2	14	1	-	4.890161329593168	5.764773672315904	CTGAATGACAGTAAC
chr14	65865181	65865182	chr14:65865182:G:A	rs55861984	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr14	65912159	65912160	chr14:65912160:A:G	rs74056899	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr14	66242005	66242006	chr14:66242006:T:C	rs75546911	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr14	66294029	66294030	chr14:66294030:T:C	rs75875356	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.3636363449223246	-3.545118434392894	GTCTATATCATTCAT
chr14	66312197	66312198	chr14:66312198:C:A	rs146848317	C	A	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr14	66316847	66316848	chr14:66316848:C:T	rs2318957	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	66932756	66932757	chr14:66932757:G:A	rs558249385	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr14	67673586	67673587	chr14:67673587:T:C	rs72723126	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	67733665	67733666	chr14:67733666:C:A	rs61991869	C	A	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr14	68084555	68084556	chr14:68084556:A:G	rs11158719	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr14	68165094	68165095	chr14:68165095:G:A	rs1952246	G	A	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr14	68174662	68174663	chr14:68174663:C:T	rs73288068	C	T	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr14	68261761	68261762	chr14:68261762:T:C	rs17105278	T	C	t	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr14	68464023	68464024	chr14:68464024:T:C	rs55794864	T	C	T	Sox1.mouse_HMG_2	13	1	+	7.300521413366431	4.174168957395376	CTGAATCTCATTCTG
chr14	68548366	68548367	chr14:68548367:C:T	rs940535849	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr14	68548389	68548390	chr14:68548390:G:A	rs192733921	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr14	68561135	68561136	chr14:68561136:C:T	rs72729524	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr14	68561148	68561149	chr14:68561149:A:G	rs12587232	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr14	68633511	68633512	chr14:68633512:C:G	rs77095342	C	G	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr14	68726743	68726744	chr14:68726744:T:C	rs11621136	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr14	68800553	68800554	chr14:68800554:C:T	rs4902649	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr14	68881461	68881462	chr14:68881462:T:C	rs181460	T	C	C	Sox1.mouse_HMG_2	11	1	+	12.108897537019567	5.200142757704348	CTGAATCCCATTCAT
chr14	68896020	68896021	chr14:68896021:G:A	rs11620768	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.5732054259826365	5.577441658617839	GAGAATACCATCCAT
chr14	69483399	69483400	chr14:69483400:G:A	rs79072402	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr14	69657989	69657990	chr14:69657990:C:T	rs567329204	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr14	69768100	69768101	chr14:69768101:T:C	rs181278650	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr14	69768108	69768109	chr14:69768109:A:G	rs115376236	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr14	69773208	69773209	chr14:69773209:C:T	rs8019166	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr14	70003187	70003188	chr14:70003188:A:T	rs1459703	A	T	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr14	70032634	70032635	chr14:70032635:C:G	rs73290791	C	G	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr14	70141497	70141498	chr14:70141498:C:T	rs8005050	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	70186506	70186507	chr14:70186507:C:T	rs12050332	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	70190535	70190536	chr14:70190536:C:A	rs6573935	C	A	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr14	70382370	70382371	chr14:70382371:C:T	rs10146573	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr14	70382396	70382397	chr14:70382397:A:G	rs10146506	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.229477778338694	-2.6792770009765268	AGGAATGACATACAT
chr14	70726585	70726586	chr14:70726586:A:G	rs7156271	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr14	70808004	70808005	chr14:70808005:C:G	rs11158882	C	G	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr14	70827530	70827531	chr14:70827531:T:C	rs61990553	T	C	t	Sox1.mouse_HMG_2	10	1	+	8.451086276570136	1.6031446982898547	ATGAATATCATTGAA
chr14	70905049	70905050	chr14:70905050:G:A	rs192370093	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr14	71194044	71194045	chr14:71194045:C:T	rs757571	C	T	T	Sox1.mouse_HMG_2	0	1	-	8.739270111421208	9.743506344056405	GTGAATAACATACAC
chr14	71314721	71314722	chr14:71314722:C:T	rs112929191	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr14	71488793	71488794	chr14:71488794:G:A	rs75830664	G	A	G	Sox1.mouse_HMG_2	12	1	-	9.068365849323332	4.395778745655077	ATGAATACCATCCAG
chr14	71492004	71492005	chr14:71492005:C:T	rs150925118	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr14	71751386	71751387	chr14:71751387:A:G	rs1204985	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.966742175083081	-1.9420126042321395	ATGACTCACATTTAG
chr14	71824505	71824506	chr14:71824506:C:T	rs17178716	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr14	72001930	72001931	chr14:72001931:T:C	rs2238270	T	C	c	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr14	72014142	72014143	chr14:72014143:A:G	rs758235	A	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	72418799	72418800	chr14:72418800:A:G	rs184330596	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr14	72419565	72419566	chr14:72419566:T:C	rs11628263	T	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr14	72431266	72431267	chr14:72431267:T:A	rs4903018	T	A	A	Sox1.mouse_HMG_2	5	1	+	3.6113175218441036	-3.2974372574711177	GTGAATAAAATGCAG
chr14	72597349	72597350	chr14:72597350:G:A	rs2877814	G	A	g	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr14	72709396	72709397	chr14:72709397:T:C	rs6574092	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr14	72721458	72721459	chr14:72721459:A:G	rs740971	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	72804733	72804734	chr14:72804734:A:T	rs4903061	A	T	T	Sox1.mouse_HMG_2	1	1	-	5.20339503669981	0.5594027292065776	TTGAATCAGATTCAA
chr14	72810383	72810384	chr14:72810384:C:A	rs1990441	C	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	72810390	72810391	chr14:72810391:T:C	rs8015833	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr14	72810391	72810392	chr14:72810392:G:T	rs535743409	G	T	G	Sox1.mouse_HMG_2	0	1	+	12.170222230770795	12.239639063918206	GTGAATCACATTCAT
chr14	72879149	72879150	chr14:72879150:G:A	rs72732444	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr14	72937971	72937972	chr14:72937972:A:C	rs3815500	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr14	73179229	73179230	chr14:73179230:A:G	rs2333030	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr14	73236149	73236150	chr14:73236150:G:C	rs78387414	G	C	g	Sox1.mouse_HMG_2	0	1	+	3.790786562775315	4.1261465896921585	GTGAATTCCAGTTTC
chr14	73523455	73523456	chr14:73523456:T:C	rs4903119	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr14	73526366	73526367	chr14:73526367:C:T	rs116000956	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	73601780	73601781	chr14:73601781:G:C	rs57945518	G	C	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr14	73937750	73937751	chr14:73937751:A:G	rs113885060	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.90856545289948	-1.912847316260593	CAGAATACCCTTCAT
chr14	74140620	74140621	chr14:74140621:G:C	rs62005155	G	C	C	Sox1.mouse_HMG_2	4	1	-	2.164434105960546	-2.2749175953326035	GTGACGGACAGTCAC
chr14	74244545	74244546	chr14:74244546:G:A	rs2024241	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr14	74294880	74294881	chr14:74294881:A:G	rs3742800	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	74334125	74334126	chr14:74334126:C:T	rs76435921	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr14	74369841	74369842	chr14:74369842:G:C	rs77682543	G	C	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr14	74473908	74473909	chr14:74473909:C:T	rs1029702	C	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr14	75257605	75257606	chr14:75257606:A:T	rs566974962	A	T	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	75257641	75257642	chr14:75257642:C:T	rs72719935	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr14	75280414	75280415	chr14:75280415:G:T	rs1063169	G	T	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr14	75335013	75335014	chr14:75335014:C:T	rs931364542	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr14	75408521	75408522	chr14:75408522:A:G	rs2103451	A	G	A	Sox1.mouse_HMG_2	14	1	-	6.443609045049254	5.568996702326517	TTGACTATCTTTCAT
chr14	75533759	75533760	chr14:75533760:A:T	rs72723622	A	T	A	Sox1.mouse_HMG_2	9	1	+	4.72623216860707	-2.18252261070815	GGGAATAACAATCAT
chr14	75549325	75549326	chr14:75549326:C:T	rs11626877	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	75564124	75564125	chr14:75564125:T:C	rs8017257	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr14	75771774	75771775	chr14:75771775:A:G	rs758944388	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr14	76053461	76053462	chr14:76053462:A:G	rs11159166	A	G	G	Sox1.mouse_HMG_2	5	1	-	6.608219442958828	-0.3005353363563933	GTGACTTGCATTTAA
chr14	76077316	76077317	chr14:76077317:T:C	rs1861922	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr14	76339395	76339396	chr14:76339396:A:G	rs7146132	A	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr14	76345834	76345835	chr14:76345835:G:C	rs10149196	G	C	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr14	76431426	76431427	chr14:76431427:C:G	rs1077429	C	G	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr14	76759545	76759546	chr14:76759546:A:G	rs113378781	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr14	76760610	76760611	chr14:76760611:G:A	rs189010201	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr14	76779992	76779993	chr14:76779993:G:A	rs151219576	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	76918339	76918340	chr14:76918340:C:T	chr14:76918340:C:T	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr14	76962542	76962543	chr14:76962543:T:C	rs74068781	T	C	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr14	77109711	77109712	chr14:77109712:G:A	rs75351083	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr14	77163337	77163338	chr14:77163338:C:T	rs158105	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr14	77175835	77175836	chr14:77175836:G:A	rs4903552	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr14	77280468	77280469	chr14:77280469:T:C	rs4540995	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr14	77280503	77280504	chr14:77280504:C:G	rs71413457	C	G	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	77303647	77303648	chr14:77303648:T:C	rs149165821	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	77343595	77343596	chr14:77343596:C:T	rs3815628	C	T	C	Sox1.mouse_HMG_2	8	1	+	5.188935721292229	-0.4554909690897565	TTGACTTCCTTTCAC
chr14	77570314	77570315	chr14:77570315:C:G	rs76545605	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr14	77882689	77882690	chr14:77882690:T:C	rs741575	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	77904111	77904112	chr14:77904112:A:G	rs12590199	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.3141915471755485	-2.5945632321396714	GTGAATTCCAGTGAA
chr14	77992628	77992629	chr14:77992629:C:G	rs7149282	C	G	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr14	78007412	78007413	chr14:78007413:G:A	rs118007311	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr14	78637993	78637994	chr14:78637994:C:A	rs17107986	C	A	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	79068965	79068966	chr14:79068966:T:A	rs4903821	T	A	a	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr14	79434300	79434301	chr14:79434301:C:T	rs776511590	C	T	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr14	79680664	79680665	chr14:79680665:T:C	rs73329949	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.859197301106138	-2.049557478209081	ATCACTTTCATTCTT
chr14	80136478	80136479	chr14:80136479:A:T	rs149879701	A	T	A	Sox1.mouse_HMG_2	4	1	+	4.344942239431377	-2.476470529728694	CTGCATTTCAGTCAG
chr14	80173828	80173829	chr14:80173829:C:G	rs225005	C	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr14	80175976	80175977	chr14:80175977:C:T	rs2216086	C	T	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr14	80342714	80342715	chr14:80342715:G:A	rs187696554	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	80792733	80792734	chr14:80792734:G:A	rs4523859	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	81714098	81714099	chr14:81714099:G:A	rs8014728	G	A	A	Sox1.mouse_HMG_2	4	1	-	5.538984033395835	1.0996323321026833	ATGACTGACACTCAA
chr14	81814299	81814300	chr14:81814300:T:G	rs7151862	T	G	G	Sox1.mouse_HMG_2	7	1	-	4.621809958488333	4.225125237820263	CTCAATTAAATTCAG
chr14	82796686	82796687	chr14:82796687:A:G	rs8003754	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr14	82912105	82912106	chr14:82912106:G:A	rs17117682	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	83122466	83122467	chr14:83122467:T:A	rs11850544	T	A	T	Sox1.mouse_HMG_2	11	1	+	3.3794706151065474	-3.529284164208673	ATAAATGACTTTCAG
chr14	83128193	83128194	chr14:83128194:A:G	rs7155023	A	G	G	Sox1.mouse_HMG_2	4	1	+	5.709361048270092	-1.1120517208899785	ATGAACACCATTCTA
chr14	83165761	83165762	chr14:83165762:G:A	rs11849894	G	A	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr14	83183865	83183866	chr14:83183866:C:G	rs1457011	C	G	C	Sox1.mouse_HMG_2	7	1	+	2.8342466183485775	2.5298765194755712	TTGACTACCAGACAA
chr14	83422190	83422191	chr14:83422191:T:C	rs229827	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	83850414	83850415	chr14:83850415:A:G	rs72697187	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	83906286	83906287	chr14:83906287:T:C	rs76520063	T	C	T	Sox1.mouse_HMG_2	9	1	-	2.5562957906761836	-4.352458988639035	ATGGAAAACATTCAG
chr14	84042296	84042297	chr14:84042297:C:T	rs17729686	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr14	84162328	84162329	chr14:84162329:T:C	rs7160136	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr14	84256881	84256882	chr14:84256882:T:G	rs10498573	T	G	T	Sox1.mouse_HMG_2	6	1	+	4.790301125016488	4.191129137889242	TTGAATTTCTTTCTT
chr14	84760791	84760792	chr14:84760792:G:A	rs557988019	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr14	85040110	85040111	chr14:85040111:A:G	rs113585774	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr14	85063703	85063704	chr14:85063704:C:T	chr14:85063704:C:T	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	85243082	85243083	chr14:85243083:C:T	rs17201769	C	T	C	Sox1.mouse_HMG_2	3	1	+	4.307216402853446	4.307216402853446	GTGCATTCCATTCTC
chr14	85313864	85313865	chr14:85313865:A:G	rs59474350	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr14	85357181	85357182	chr14:85357182:T:C	rs10144610	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.530931715857578	3.5266954832223765	ATGAACTCAATTCAT
chr14	85472126	85472127	chr14:85472127:T:C	rs11852209	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr14	85577427	85577428	chr14:85577428:C:T	rs116919191	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr14	85905279	85905280	chr14:85905280:T:C	rs117015478	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	86124136	86124137	chr14:86124137:G:A	rs2153493	G	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr14	86300422	86300423	chr14:86300423:G:A	rs12890313	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr14	87029210	87029211	chr14:87029211:C:T	rs56167623	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr14	87058376	87058377	chr14:87058377:G:A	rs58028837	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr14	87691222	87691223	chr14:87691223:T:A	rs11844782	T	A	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr14	87811461	87811462	chr14:87811462:G:A	rs183305824	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr14	87870343	87870344	chr14:87870344:T:C	rs144216447	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr14	88003704	88003705	chr14:88003705:G:T	rs9671908	G	T	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr14	88096637	88096638	chr14:88096638:C:T	rs751072	C	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr14	88111746	88111747	chr14:88111747:T:C	rs4899942	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr14	88348673	88348674	chr14:88348674:A:C	rs10135523	A	C	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	88481175	88481176	chr14:88481176:G:C	rs73314151	G	C	g	Sox1.mouse_HMG_2	7	1	+	4.613646686492776	4.918016785365782	CTGAAAGGCATTCTT
chr14	88481183	88481184	chr14:88481184:T:C	rs73314152	T	C	t	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr14	88559031	88559032	chr14:88559032:A:G	rs12436642	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr14	88940699	88940700	chr14:88940700:A:G	rs4904477	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr14	88950285	88950286	chr14:88950286:T:G	rs1107500	T	G	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr14	88976750	88976751	chr14:88976751:A:G	rs7148180	A	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr14	88999189	88999190	chr14:88999190:C:A	rs1287644	C	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr14	89125282	89125283	chr14:89125283:C:T	rs1957839	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr14	89137604	89137605	chr14:89137605:C:T	rs61301380	C	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr14	89263385	89263386	chr14:89263386:G:A	rs76459454	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr14	89310196	89310197	chr14:89310197:T:G	rs75067100	T	G	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr14	89331369	89331370	chr14:89331370:C:T	rs10146970	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr14	89335355	89335356	chr14:89335356:G:A	rs12882047	G	A	A	Sox1.mouse_HMG_2	8	1	-	3.1372228625858947	-2.5072038277960913	AGGAATGACACTCAG
chr14	89432825	89432826	chr14:89432826:T:G	rs4899993	T	G	T	Sox1.mouse_HMG_2	5	1	+	5.787880914591983	-1.1208738647232375	TTGCATAGCATTCTT
chr14	89442827	89442828	chr14:89442828:A:G	rs1959450	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr14	89476899	89476900	chr14:89476900:G:A	rs59385441	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr14	89492019	89492020	chr14:89492020:C:A	rs8017328	C	A	A	Sox1.mouse_HMG_2	8	1	+	2.8347515647411847	-2.0147452507709143	ATGAAAAACATACAC
chr14	89589123	89589124	chr14:89589124:G:T	rs35889227	G	T	G	Sox1.mouse_HMG_2	2	1	+	5.388641517283784	-1.508052814338929	TTGAACTGCAGTCAT
chr14	89589130	89589131	chr14:89589131:A:G	rs4900005	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.388641517283784	-1.5201132620314368	TTGAACTGCAGTCAT
chr14	90247658	90247659	chr14:90247659:G:A	rs11621045	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr14	90369280	90369281	chr14:90369281:C:T	rs11159965	C	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr14	90399117	90399118	chr14:90399118:C:G	rs2300498	C	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr14	90464023	90464024	chr14:90464024:C:T	rs7150111	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr14	90522068	90522069	chr14:90522069:G:A	rs114037096	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr14	90570639	90570640	chr14:90570640:C:T	rs1286492	C	T	C	Sox1.mouse_HMG_2	0	1	-	4.917031621685643	5.9212678543208455	GTGACTGACTTTCAC
chr14	90616451	90616452	chr14:90616452:C:A	rs114419451	C	A	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	90616452	90616453	chr14:90616453:G:A	rs12588994	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr14	90657499	90657500	chr14:90657500:C:T	rs3742658	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr14	90661954	90661955	chr14:90661955:T:C	rs74469335	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr14	90763246	90763247	chr14:90763247:C:T	rs9944015	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr14	90969606	90969607	chr14:90969607:G:A	rs147859534	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr14	91090350	91090351	chr14:91090351:G:A	rs77314340	G	A	G	Sox1.mouse_HMG_2	4	1	-	5.201860102966711	0.7625084016735592	TTCACTGTCATTCAA
chr14	91925165	91925166	chr14:91925166:T:C	rs7140207	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.550837439394605	-0.39528024837804343	CTGACTTTCTTTCAA
chr14	92056278	92056279	chr14:92056279:G:A	rs56062950	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.380948934110447	-0.2634777562715401	TTGAATACCAGACAG
chr14	92263562	92263563	chr14:92263563:T:G	rs4904855	T	G	T	Sox1.mouse_HMG_2	5	1	+	5.561807936628701	-1.3469468426865197	AGGACTGACATTCTT
chr14	92307558	92307559	chr14:92307559:C:G	rs12896471	C	G	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr14	92309844	92309845	chr14:92309845:G:A	rs58056224	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr14	92428602	92428603	chr14:92428603:C:G	rs8010788	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr14	92599256	92599257	chr14:92599257:A:G	rs4904955	A	G	G	Sox1.mouse_HMG_2	11	1	-	2.7645912567679294	-4.144163522547291	CTGAACTCCAGTCTT
chr14	92957883	92957884	chr14:92957884:G:A	rs12894234	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	93177898	93177899	chr14:93177899:A:G	rs1263371	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr14	93331551	93331552	chr14:93331552:C:G	rs573854894	C	G	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	93565089	93565090	chr14:93565090:T:G	rs13329061	T	G	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr14	93718876	93718877	chr14:93718877:G:A	rs11624969	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr14	93880064	93880065	chr14:93880065:T:C	rs72696696	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.706806371629963	-1.1146063975301082	ATGAAGTACAGTCAA
chr14	93956980	93956981	chr14:93956981:T:A	rs66925826	T	A	T	Sox1.mouse_HMG_2	5	1	+	2.49979413287739	-4.40896064643783	CTGACTGACAGACAC
chr14	93957001	93957002	chr14:93957002:C:T	rs574787594	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr14	93975854	93975855	chr14:93975855:A:G	rs78319443	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.577441658617839	-1.2704999196624431	AAGAATACCATGCAT
chr14	93975914	93975915	chr14:93975915:T:G	rs72700358	T	G	T	Sox1.mouse_HMG_2	14	1	+	6.5607549239487994	5.407686807161061	ATAAATAACATTCCT
chr14	93995579	93995580	chr14:93995580:G:A	rs113799904	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	94126556	94126557	chr14:94126557:G:A	rs113423062	G	A	G	Sox1.mouse_HMG_2	13	1	+	2.7735236991109997	7.719641386883648	CAGACTTCCATTCGC
chr14	94171538	94171539	chr14:94171539:T:A	rs75404723	T	A	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	94174475	94174476	chr14:94174476:C:T	rs114546840	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	94269265	94269266	chr14:94269266:A:G	rs7144115	A	G	A	Sox1.mouse_HMG_2	7	1	+	4.309636385301305	3.608581565760229	TAGAATAACATTCCA
chr14	94288891	94288892	chr14:94288892:C:T	rs141650479	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr14	94407433	94407434	chr14:94407434:G:A	rs8020968	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr14	94466394	94466395	chr14:94466395:C:T	rs1956714	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr14	94582469	94582470	chr14:94582470:G:C	rs151125315	G	C	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr14	94822300	94822301	chr14:94822301:G:A	rs748752	G	A	G	Sox1.mouse_HMG_2	4	1	-	5.68065809882007	1.2413063975269192	ATGACGTCCATTCAA
chr14	95273868	95273869	chr14:95273869:G:A	rs78601644	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	95292221	95292222	chr14:95292222:A:G	rs2144817	A	G	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr14	95468564	95468565	chr14:95468565:C:G	rs8018925	C	G	C	Sox1.mouse_HMG_2	10	1	-	5.23300917110986	1.137665108554676	GTGAGTTACAGTCAC
chr14	95484803	95484804	chr14:95484804:T:C	rs76344881	T	C	t	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr14	95523159	95523160	chr14:95523160:T:G	rs76368463	T	G	T	Sox1.mouse_HMG_2	13	1	+	5.614315306404638	3.862561171790283	TTCAATTCCATTCTG
chr14	95529470	95529471	chr14:95529471:A:G	rs12890905	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr14	95615777	95615778	chr14:95615778:G:A	rs7145675	G	A	g	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr14	95765072	95765073	chr14:95765073:G:A	rs75657415	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr14	95817825	95817826	chr14:95817826:C:T	rs35085161	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr14	95994094	95994095	chr14:95994095:A:G	rs942207	A	G	G	Sox1.mouse_HMG_2	6	1	+	3.97173521697185	2.531557795103211	AAGAATATCATTAAG
chr14	95998773	95998774	chr14:95998774:T:C	rs72702817	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr14	96029537	96029538	chr14:96029538:A:G	rs4274360	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr14	96261664	96261665	chr14:96261665:A:G	rs10137303	A	G	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr14	96436356	96436357	chr14:96436357:C:G	rs76675423	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr14	96681890	96681891	chr14:96681891:T:G	rs10484208	T	G	T	Sox1.mouse_HMG_2	9	1	-	4.850587647255928	-2.058167132059292	GTGAACATCAGTCAG
chr14	96743062	96743063	chr14:96743063:C:T	rs72708750	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	96749842	96749843	chr14:96749843:A:G	rs4905540	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.884828637487395	-1.0612890502852528	TTAAATAACATGCAG
chr14	97297503	97297504	chr14:97297504:T:C	rs10138125	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr14	97603100	97603101	chr14:97603101:C:T	rs8005344	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	97771903	97771904	chr14:97771904:G:A	rs7152713	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.646892127879878	0.9743050242116231	CTGCATACCAGTCAG
chr14	97781424	97781425	chr14:97781425:T:A	rs7155898	T	A	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr14	97782616	97782617	chr14:97782617:T:C	rs6575634	T	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	98131040	98131041	chr14:98131041:G:A	rs79658321	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	98142651	98142652	chr14:98142652:C:A	rs76613670	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr14	98185129	98185130	chr14:98185130:A:G	rs7159845	A	G	a	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr14	98193007	98193008	chr14:98193008:C:T	rs17096707	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr14	98220203	98220204	chr14:98220204:A:G	rs8021653	A	G	a	Sox1.mouse_HMG_2	3	1	+	4.631905054790675	-2.2768497245245434	GCCAATAGCATTCAG
chr14	98270553	98270554	chr14:98270554:A:G	rs80297489	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr14	98304880	98304881	chr14:98304881:T:C	rs8013791	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.4949866256174955	-2.4137681536977245	CTCAATGTCATTTAT
chr14	98454448	98454449	chr14:98454449:T:G	rs66725269	T	G	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr14	98671297	98671298	chr14:98671298:A:G	rs1950476	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr14	98890898	98890899	chr14:98890899:C:T	rs17097980	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr14	99006372	99006373	chr14:99006373:G:A	rs1257632	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr14	99047901	99047902	chr14:99047902:G:A	rs17630918	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr14	99079047	99079048	chr14:99079048:A:C	rs7157886	A	C	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr14	99134572	99134573	chr14:99134573:C:T	rs55727874	C	T	c	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr14	99177949	99177950	chr14:99177950:T:C	rs710305	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr14	99276840	99276841	chr14:99276841:A:C	rs8004151	A	C	C	Sox1.mouse_HMG_2	6	1	+	6.22254237535552	1.8701273726671535	TTAAATAAAATTCAC
chr14	99426280	99426281	chr14:99426281:C:T	rs12590989	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr14	99479016	99479017	chr14:99479017:G:A	rs8012839	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr14	99559519	99559520	chr14:99559520:T:A	rs8019472	T	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr14	99559550	99559551	chr14:99559551:T:G	rs4905854	T	G	G	Sox1.mouse_HMG_2	11	1	+	4.849369242928671	-2.059385536386549	GTGACTTCCATTGAG
chr14	99767015	99767016	chr14:99767016:C:T	rs11160546	C	T	T	Sox1.mouse_HMG_2	8	1	+	2.5576563901104574	-3.0867703002715294	CTGAATCACAGTCCC
chr14	99828307	99828308	chr14:99828308:G:A	rs8019086	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr14	99875083	99875084	chr14:99875084:C:T	rs79232945	C	T	C	Sox1.mouse_HMG_2	4	1	+	6.83513666560895	2.395784964315798	GTGCCTACCATTCAT
chr14	99875096	99875097	chr14:99875097:A:C	rs7152170	A	C	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr14	99885487	99885488	chr14:99885488:A:G	rs1191109	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr14	100122147	100122148	chr14:100122148:G:A	rs11849414	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr14	100348808	100348809	chr14:100348809:A:G	rs7144866	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr14	100406803	100406804	chr14:100406804:G:A	rs8016473	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr14	100532945	100532946	chr14:100532946:G:A	rs7493670	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr14	100575205	100575206	chr14:100575206:C:T	rs117250491	C	T	C	Sox1.mouse_HMG_2	10	1	-	2.702281399336564	-1.3930626632186194	CTGGCTTCCAGTCAC
chr14	100692471	100692472	chr14:100692472:C:G	rs12880358	C	G	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr14	100822123	100822124	chr14:100822124:T:C	rs61993267	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr14	101066755	101066756	chr14:101066756:C:T	rs58834075	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr14	101124196	101124197	chr14:101124197:A:G	rs73356967	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.9672650817075175	-1.9414896976077016	CACAATAGCATTCAG
chr14	101129906	101129907	chr14:101129907:G:A	rs4906050	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr14	101174454	101174455	chr14:101174455:A:G	rs61994497	A	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr14	101513576	101513577	chr14:101513577:C:T	rs8010290	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr14	101760335	101760336	chr14:101760336:G:A	rs117677655	G	A	.	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr14	101760348	101760349	chr14:101760349:C:T	chr14:101760349:C:T	C	T	.	Sox1.mouse_HMG_2	12	1	+	6.638878926510706	1.966291822842451	GTGACTCCCAGTCAT
chr14	101810488	101810489	chr14:101810489:G:A	chr14:101810489:G:A	G	A	G	Sox1.mouse_HMG_2	10	1	+	12.079147579299057	7.983803516743873	ATGAATTGCAGTCAG
chr14	101813681	101813682	chr14:101813682:G:T	rs118152451	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr14	101849104	101849105	chr14:101849105:A:G	rs147209738	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr14	101876765	101876766	chr14:101876766:C:G	rs1678001	C	G	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr14	101895376	101895377	chr14:101895377:G:A	rs28425501	G	A	G	Sox1.mouse_HMG_2	0	1	+	8.18576547996781	9.190001712603012	GTTAATGACATTCAT
chr14	102006259	102006260	chr14:102006260:A:G	rs17512327	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr14	102182289	102182290	chr14:102182290:T:C	rs118157832	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr14	102277310	102277311	chr14:102277311:A:C	rs77717558	A	C	A	Sox1.mouse_HMG_2	10	1	-	3.1278297119007106	0.3752321961756141	CTGAGCAACATTCAT
chr14	102764277	102764278	chr14:102764278:G:A	rs181381449	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	102778608	102778609	chr14:102778609:A:G	rs1237179000	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.910992696891867	3.9067564642566643	ATGGATATAATTCAT
chr14	103052656	103052657	chr14:103052657:T:C	rs75817380	T	C	T	Sox1.mouse_HMG_2	6	1	-	5.075873180574824	3.6356957587061856	ATGAATAGAATTAAT
chr14	103186629	103186630	chr14:103186630:C:T	rs151036716	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr14	103213647	103213648	chr14:103213648:A:G	rs2763547	A	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr14	103269376	103269377	chr14:103269377:G:A	rs55723265	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr14	103840100	103840101	chr14:103840101:T:C	rs17101871	T	C	T	Sox1.mouse_HMG_2	14	1	+	7.196644965335686	6.32203262261295	CTGAACAACAGTCAT
chr14	103854965	103854966	chr14:103854966:G:A	rs11625216	G	A	G	Sox1.mouse_HMG_2	10	1	+	3.2486179875911465	-0.846726074964037	CTGATTTACAGTCTT
chr14	104187616	104187617	chr14:104187617:A:G	rs546426230	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.4683880310308406	-3.44036674828438	CCGCATGCCATTCAT
chr14	104195603	104195604	chr14:104195604:C:G	rs4509954	C	G	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr14	104256262	104256263	chr14:104256263:C:T	rs35832611	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr14	104267643	104267644	chr14:104267644:A:G	rs13313386	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr14	104396538	104396539	chr14:104396539:C:T	rs78271134	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr14	104396539	104396540	chr14:104396540:G:A	rs116886725	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr14	104668013	104668014	chr14:104668014:A:G	rs55880426	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr14	104738926	104738927	chr14:104738927:G:A	rs117592156	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr14	104896819	104896820	chr14:104896820:A:G	rs7152667	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr14	104896864	104896865	chr14:104896865:A:G	rs10147348	A	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr14	105081270	105081271	chr14:105081271:A:G	rs972636031	A	G	a	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr14	105242132	105242133	chr14:105242133:A:G	rs2816651	A	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr14	105242134	105242135	chr14:105242135:C:T	rs2735829	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr14	105533131	105533132	chr14:105533132:C:T	rs76353977	C	T	.	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr14	105541978	105541979	chr14:105541979:C:T	rs61983271	C	T	.	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr14	105888559	105888560	chr14:105888560:G:A	rs12894229	G	A	.	Sox1.mouse_HMG_2	10	1	+	7.2459090688984436	3.1505650063432586	GGGAATAGCAGTCAC
chr14	105897192	105897193	chr14:105897193:C:A	chr14:105897193:C:A	C	A	.	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr14	106005445	106005446	chr14:106005446:C:T	rs34652473	C	T	.	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr14	106163837	106163838	chr14:106163838:C:G	rs12432688	C	G	.	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr14	106539509	106539510	chr14:106539510:A:T	rs7160063	A	T	N	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr15	20229587	20229588	chr15:20229588:T:G	rs9744203	T	G	.	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	20232724	20232725	chr15:20232725:G:A	rs4347598	G	A	.	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	20232743	20232744	chr15:20232744:G:A	rs11857524	G	A	.	Sox1.mouse_HMG_2	8	1	-	4.855706927934417	-0.7887197624475689	CTGACTGCCGTTCAC
chr15	20258397	20258398	chr15:20258398:C:T	rs8033265	C	T	c	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	20267020	20267021	chr15:20267021:G:A	rs7177785	G	A	g	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr15	20280837	20280838	chr15:20280838:C:T	rs55829299	C	T	c	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr15	20369636	20369637	chr15:20369637:T:C	rs62001707	T	C	.	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	20378709	20378710	chr15:20378710:T:C	rs74004846	T	C	.	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	20391132	20391133	chr15:20391133:T:C	rs61254862	T	C	.	Sox1.mouse_HMG_2	0	1	-	3.820299620386856	2.8160633877516537	ATTAATGTCATTCTA
chr15	20452601	20452602	chr15:20452602:C:T	rs75209681	C	T	.	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	20640505	20640506	chr15:20640506:T:C	rs113764021	T	C	t	Sox1.mouse_HMG_2	1	1	+	4.655006789080239	0.01101448158700491	ATAAAGAACATTCAA
chr15	20660143	20660144	chr15:20660144:A:G	rs12442259	A	G	a	Sox1.mouse_HMG_2	4	1	+	4.207785536659197	-2.613627232500875	CTGAATTCCATTGTA
chr15	20663382	20663383	chr15:20663383:C:T	rs7402089	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr15	20663393	20663394	chr15:20663394:T:C	rs113704265	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr15	21260080	21260081	chr15:21260081:C:T	rs4984169	C	T	.	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr15	21267768	21267769	chr15:21267769:A:G	rs3908132	A	G	a	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr15	21267788	21267789	chr15:21267789:A:G	rs1878996	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr15	21268979	21268980	chr15:21268980:G:A	rs1814943	G	A	A	Sox1.mouse_HMG_2	8	1	-	2.3394328822044876	-3.3049938081775	CTGAAAAGCATCCAT
chr15	22260515	22260516	chr15:22260516:A:G	rs565924965	A	G	a	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr15	22851673	22851674	chr15:22851674:C:T	rs117894530	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr15	23037512	23037513	chr15:23037513:A:T	rs73409372	A	T	a	Sox1.mouse_HMG_2	3	1	+	8.991046603549457	2.082291824234236	CTGAATAACATTTTT
chr15	23853446	23853447	chr15:23853447:T:C	rs1459958	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr15	24148014	24148015	chr15:24148015:A:G	rs2883346	A	G	g	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	24148027	24148028	chr15:24148028:A:G	rs12915282	A	G	a	Sox1.mouse_HMG_2	11	1	-	4.609917940982722	-2.2988368383324977	ATAACTTGCATTCTG
chr15	24363653	24363654	chr15:24363654:A:T	rs11853152	A	T	-	Sox1.mouse_HMG_2	9	1	+	5.22377311342672	-1.6849816658885004	TTCACTTACAGTCAT
chr15	25032640	25032641	chr15:25032641:A:G	rs1030389	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	25181451	25181452	chr15:25181452:C:T	rs140014591	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr15	25181452	25181453	chr15:25181453:C:T	rs145424634	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr15	25565471	25565472	chr15:25565472:A:G	rs4906972	A	G	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	25706155	25706156	chr15:25706156:G:A	rs73361200	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	25776608	25776609	chr15:25776609:C:G	rs76719748	C	G	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr15	25822438	25822439	chr15:25822439:C:T	rs11630331	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr15	25831559	25831560	chr15:25831560:A:G	rs74767497	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr15	26170895	26170896	chr15:26170896:A:G	rs487586	A	G	A	Sox1.mouse_HMG_2	10	1	-	2.5562957906761836	-4.291645787604097	ATGTAAAACATTCAG
chr15	26633624	26633625	chr15:26633625:A:T	rs7162732	A	T	A	Sox1.mouse_HMG_2	5	1	-	4.889519094395685	-2.019235684919535	GTTAATTGCATTCTT
chr15	26864565	26864566	chr15:26864566:A:C	rs933384851	A	C	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr15	26874034	26874035	chr15:26874035:G:A	rs562044278	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr15	26874042	26874043	chr15:26874043:C:T	rs180954838	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	26874077	26874078	chr15:26874078:G:A	rs1047139114	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr15	26874082	26874083	chr15:26874083:C:T	rs151202912	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr15	26889551	26889552	chr15:26889552:C:T	rs143190488	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr15	26944020	26944021	chr15:26944021:G:A	rs6422906	G	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr15	27232359	27232360	chr15:27232360:G:A	rs145165017	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr15	27263662	27263663	chr15:27263663:G:A	rs8043244	G	A	G	Sox1.mouse_HMG_2	0	1	-	8.686251546518838	8.420308352749403	CTGAATACCATTAAC
chr15	27759824	27759825	chr15:27759825:G:A	rs28614106	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr15	27797007	27797008	chr15:27797008:G:A	rs17674023	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr15	27867993	27867994	chr15:27867994:C:A	rs4476137	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr15	28049879	28049880	chr15:28049880:C:T	rs1597197	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr15	28890791	28890792	chr15:28890792:T:C	rs149088908	T	C	t	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr15	28943124	28943125	chr15:28943125:T:C	rs8024272	T	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr15	28944218	28944219	chr15:28944219:C:T	rs2336909	C	T	T	Sox1.mouse_HMG_2	8	1	+	5.448848574048839	-0.19557811633314812	ATGAATTGCGGTCAC
chr15	28981450	28981451	chr15:28981451:G:A	rs2087534	G	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr15	28990735	28990736	chr15:28990736:G:A	rs58656217	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr15	29046119	29046120	chr15:29046120:C:T	rs1873281	C	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	29046122	29046123	chr15:29046123:A:G	rs1873282	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	29158140	29158141	chr15:29158141:C:A	rs9635309	C	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr15	29280659	29280660	chr15:29280660:G:A	rs11071833	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr15	29685913	29685914	chr15:29685914:A:G	rs78743948	A	G	A	Sox1.mouse_HMG_2	10	1	-	2.1596110700081117	-4.688330508272169	ATGAATACCCTACAG
chr15	29826320	29826321	chr15:29826321:C:G	rs11634700	C	G	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr15	30030484	30030485	chr15:30030485:T:G	rs79566487	T	G	T	Sox1.mouse_HMG_2	6	1	-	4.254409792259294	-0.09800521042907256	CGGAATATTATTCAG
chr15	30992409	30992410	chr15:30992410:A:G	rs79097619	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	31222173	31222174	chr15:31222174:G:T	rs4779841	G	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr15	31303907	31303908	chr15:31303908:T:C	rs16956682	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	31325374	31325375	chr15:31325375:G:A	chr15:31325375:G:A	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.6055966915093234	-1.039805841506893	CTGAAAACCAGTCTT
chr15	31513616	31513617	chr15:31513617:G:A	rs28583941	G	A	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr15	31585300	31585301	chr15:31585301:T:C	rs11071199	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	31817969	31817970	chr15:31817970:G:C	rs11631016	G	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr15	31974742	31974743	chr15:31974743:G:C	rs566899189	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	32098021	32098022	chr15:32098022:A:G	rs79949312	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.304004214870936	-3.5174085542891342	CTGAATGTCCTTCTG
chr15	32240134	32240135	chr15:32240135:C:T	rs1896925	C	T	t	Sox1.mouse_HMG_2	4	1	-	6.409374632768099	13.230787401928174	CTGAGTAACAGTCAC
chr15	32662893	32662894	chr15:32662894:C:T	rs11071887	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	32769521	32769522	chr15:32769522:A:G	rs10519742	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.421363971306791	-1.400048797853281	ATGAATATCATTATG
chr15	32793066	32793067	chr15:32793067:T:G	rs1258753	T	G	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr15	32851658	32851659	chr15:32851659:A:G	rs7164743	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	32952293	32952294	chr15:32952294:A:C	rs75952503	A	C	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr15	33040119	33040120	chr15:33040120:T:C	rs8028114	T	C	T	Sox1.mouse_HMG_2	1	1	+	9.760489512403966	5.116497204910732	ATGTATATCATTCAT
chr15	33101287	33101288	chr15:33101288:T:C	rs12900344	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	33101308	33101309	chr15:33101309:T:C	rs7177958	T	C	T	Sox1.mouse_HMG_2	13	1	-	3.776316045256168	-1.16980164251648	TAGAATACCATTAAC
chr15	33242190	33242191	chr15:33242191:A:G	rs35305925	A	G	A	Sox1.mouse_HMG_2	11	1	-	2.5485181966978576	-4.360236582617362	GTGACTACCAATCTG
chr15	33242780	33242781	chr15:33242781:C:T	rs138267280	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	33380735	33380736	chr15:33380736:G:A	rs567578908	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr15	33396402	33396403	chr15:33396403:A:G	rs1878300	A	G	G	Sox1.mouse_HMG_2	7	1	-	3.294552882404635	3.755497336111741	CAGAAGATCATTCAG
chr15	33462338	33462339	chr15:33462339:G:A	rs2676093	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr15	33518881	33518882	chr15:33518882:T:G	rs735545	T	G	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr15	33581219	33581220	chr15:33581220:C:A	rs1007048879	C	A	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr15	33739333	33739334	chr15:33739334:T:C	rs72713287	T	C	T	Sox1.mouse_HMG_2	13	1	-	11.757931976570008	6.81181428879736	ATGAATTTCAGTCAA
chr15	33801899	33801900	chr15:33801900:T:C	rs150028316	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr15	33830222	33830223	chr15:33830223:G:A	rs7163808	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr15	33865878	33865879	chr15:33865879:G:C	rs182087515	G	C	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	33964524	33964525	chr15:33964525:C:A	rs637055	C	A	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr15	34789149	34789150	chr15:34789150:C:G	rs189725849	C	G	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	34790023	34790024	chr15:34790024:C:T	rs1370154	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	34791598	34791599	chr15:34791599:C:T	rs62006139	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	34811566	34811567	chr15:34811567:C:T	rs75771340	C	T	C	Sox1.mouse_HMG_2	0	1	-	2.7588546919968424	3.763090924632043	GTCAGTACCATTCAG
chr15	34822131	34822132	chr15:34822132:A:G	rs13380267	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr15	34972283	34972284	chr15:34972284:A:G	rs75002467	A	G	a	Sox1.mouse_HMG_2	3	1	+	6.894742110084677	-0.014012669230543867	GTGACTTTCATTTAC
chr15	35149598	35149599	chr15:35149599:C:T	rs10162978	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr15	35149604	35149605	chr15:35149605:T:C	rs10163120	T	C	C	Sox1.mouse_HMG_2	5	1	+	4.855706927934418	-2.053047851380803	CTGACTGCCATGCAC
chr15	35192804	35192805	chr15:35192805:A:G	rs55763113	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr15	35445220	35445221	chr15:35445221:A:G	rs16960945	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	35508408	35508409	chr15:35508409:G:A	rs8035581	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	35691990	35691991	chr15:35691991:A:G	rs955431	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr15	35765341	35765342	chr15:35765342:A:G	rs11856070	A	G	A	Sox1.mouse_HMG_2	13	1	+	4.97678604997658	0.03066836220393132	GTAAATAACATTGAT
chr15	35774871	35774872	chr15:35774872:A:G	rs1846135	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr15	35870564	35870565	chr15:35870565:G:A	rs1497820	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	35873260	35873261	chr15:35873261:C:T	rs12439755	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	35873264	35873265	chr15:35873265:G:A	rs12439576	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr15	35933536	35933537	chr15:35933537:A:C	rs11073131	A	C	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	35987844	35987845	chr15:35987845:T:A	rs1030976087	T	A	T	Sox1.mouse_HMG_2	6	1	+	8.627246606235508	9.468252040976902	TGGAATTTCATTCAA
chr15	36106834	36106835	chr15:36106835:A:G	rs12592136	A	G	A	Sox1.mouse_HMG_2	3	1	+	6.557831910222711	-0.3509228690925098	ATCACTAACATTCTT
chr15	36109982	36109983	chr15:36109983:G:A	rs11854628	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr15	36156961	36156962	chr15:36156962:A:G	rs142171849	A	G	A	Sox1.mouse_HMG_2	0	1	+	5.310121650961893	4.3058854183266915	ATGAAGTCCAGTCAA
chr15	36545257	36545258	chr15:36545258:A:G	rs755416	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	36545599	36545600	chr15:36545600:C:T	rs7168191	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr15	36749007	36749008	chr15:36749008:G:A	rs74008764	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	36785402	36785403	chr15:36785403:T:C	rs9944176	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr15	36964675	36964676	chr15:36964676:C:T	rs1194772	C	T	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	36978369	36978370	chr15:36978370:T:C	rs74008819	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	37001900	37001901	chr15:37001901:G:A	rs998159122	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	37118186	37118187	chr15:37118187:T:C	rs34866816	T	C	T	Sox1.mouse_HMG_2	11	1	+	3.592625626329115	-3.316129152986105	CTGACTTACACTCTT
chr15	37138734	37138735	chr15:37138735:T:C	rs2381964	T	C	C	Sox1.mouse_HMG_2	10	1	+	7.773903942002922	0.9259623637226412	CTGAATATCATACAA
chr15	37181723	37181724	chr15:37181724:C:T	rs55798229	C	T	C	Sox1.mouse_HMG_2	1	1	-	3.1764793311512616	3.480950510229837	GGGAATACCACTCAG
chr15	37196095	37196096	chr15:37196096:C:T	rs72712905	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr15	37245264	37245265	chr15:37245265:T:C	rs10162728	T	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr15	37254172	37254173	chr15:37254173:T:C	rs28515860	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	37868615	37868616	chr15:37868616:A:G	rs4550408	A	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr15	38068984	38068985	chr15:38068985:A:G	rs116133181	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr15	38279233	38279234	chr15:38279234:C:T	rs11073311	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr15	38406415	38406416	chr15:38406416:T:C	rs4293334	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr15	38745820	38745821	chr15:38745821:G:A	rs9920502	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.084334151506314	-0.5882529521619407	CTGAGTGACATTCTA
chr15	38879412	38879413	chr15:38879413:A:T	rs76719447	A	T	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	38904462	38904463	chr15:38904463:G:A	rs4343249	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr15	38991747	38991748	chr15:38991748:G:A	rs114776735	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	38991777	38991778	chr15:38991778:C:T	rs10851375	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr15	39067996	39067997	chr15:39067997:G:A	rs7164452	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	39097217	39097218	chr15:39097218:T:C	rs16968141	T	C	t	Sox1.mouse_HMG_2	10	1	-	7.158352956191414	11.253697018746596	CTGAATTTCAATCAG
chr15	39140018	39140019	chr15:39140019:A:C	chr15:39140019:A:C	A	C	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr15	39204008	39204009	chr15:39204009:G:A	rs73383220	G	A	g	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	39238306	39238307	chr15:39238307:G:A	rs276854	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr15	39247599	39247600	chr15:39247600:T:C	rs969564	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr15	39247836	39247837	chr15:39247837:G:A	rs1309258645	G	A	G	Sox1.mouse_HMG_2	13	1	-	5.561974644723358	8.688327100694412	CTGACTGACATTCCG
chr15	39362351	39362352	chr15:39362352:G:A	rs12050799	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	39579888	39579889	chr15:39579889:T:A	rs547745491	T	A	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	39594228	39594229	chr15:39594229:T:A	rs61432611	T	A	T	Sox1.mouse_HMG_2	11	1	+	4.349160770703984	-2.5595940086112363	TTCACTTACAGTCAC
chr15	39627575	39627576	chr15:39627576:C:A	rs12442952	C	A	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr15	39693157	39693158	chr15:39693158:C:T	rs74665524	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr15	39771602	39771603	chr15:39771603:A:T	rs75968722	A	T	A	Sox1.mouse_HMG_2	0	1	+	4.637891376504456	3.703071977016664	ATTACTATCAGTCAT
chr15	39819956	39819957	chr15:39819957:A:G	rs676455	A	G	G	Sox1.mouse_HMG_2	6	1	+	6.375613218574534	4.935435796705895	GAAAATATCATTCAT
chr15	39970357	39970358	chr15:39970358:A:G	rs10851392	A	G	G	Sox1.mouse_HMG_2	7	1	+	6.457433194944468	5.756378375403392	GTCAATAACATTTAT
chr15	40047900	40047901	chr15:40047901:G:A	rs1220936281	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	40047937	40047938	chr15:40047938:A:C	rs1305935428	A	C	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr15	40047940	40047941	chr15:40047941:G:T	rs4924411	G	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr15	40101060	40101061	chr15:40101061:G:A	rs500804	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr15	40383180	40383181	chr15:40383181:G:C	rs147559298	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr15	40485495	40485496	chr15:40485496:G:A	rs8040302	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	40501061	40501062	chr15:40501062:G:T	rs2412524	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	40678988	40678989	chr15:40678989:T:A	rs539047305	T	A	T	Sox1.mouse_HMG_2	3	1	-	2.922085489890649	-3.986669289424573	ATCATTTCCATTCAG
chr15	40695849	40695850	chr15:40695850:A:C	rs138194962	A	C	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	40972140	40972141	chr15:40972141:C:G	rs3986311	C	G	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr15	41218560	41218561	chr15:41218561:A:G	rs16971651	A	G	G	Sox1.mouse_HMG_2	13	1	+	2.471673752054458	-2.4744439357181904	ATGAATTCCGTGCAT
chr15	41553890	41553891	chr15:41553891:G:C	rs8028439	G	C	G	Sox1.mouse_HMG_2	12	1	-	8.884148531175247	1.9836998807088826	TTGACTTTCAGTCAC
chr15	41977256	41977257	chr15:41977257:A:G	rs57950483	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr15	42033318	42033319	chr15:42033319:A:G	rs2724945	A	G	G	Sox1.mouse_HMG_2	10	1	-	8.958759836451735	2.110818258171456	AAGACTTGCATTCAT
chr15	42035264	42035265	chr15:42035265:A:T	rs77301384	A	T	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr15	42286369	42286370	chr15:42286370:G:T	rs72718902	G	T	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr15	42286370	42286371	chr15:42286371:C:G	rs72720903	C	G	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr15	42394639	42394640	chr15:42394640:G:C	rs8024113	G	C	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr15	42783003	42783004	chr15:42783004:A:G	rs9920935	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.995473080165875	-0.9506446076067733	CTGATTACTATTCAT
chr15	42832955	42832956	chr15:42832956:A:G	rs72713786	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr15	42926788	42926789	chr15:42926789:A:C	rs920478400	A	C	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	43330516	43330517	chr15:43330517:C:G	rs1232998514	C	G	C	Sox1.mouse_HMG_2	12	1	+	3.337148552441711	-3.5633000980246523	AGGAATGGCAGTCTG
chr15	43441531	43441532	chr15:43441532:A:G	rs45482998	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr15	43855066	43855067	chr15:43855067:C:T	rs495880	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr15	44075865	44075866	chr15:44075866:G:A	rs56108733	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr15	44527382	44527383	chr15:44527383:C:T	rs2288341	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr15	44736648	44736649	chr15:44736649:G:T	rs370306802	G	T	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr15	45015373	45015374	chr15:45015374:T:G	rs79410909	T	G	t	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr15	45476562	45476563	chr15:45476563:T:C	rs78321181	T	C	t	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	45522107	45522108	chr15:45522108:A:G	rs61756712	A	G	A	Sox1.mouse_HMG_2	0	1	-	3.3955725869115936	3.661515780681026	TTGACCAACAGTCAG
chr15	46076016	46076017	chr15:46076017:T:C	rs10519042	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr15	46076047	46076048	chr15:46076048:T:G	rs11070488	T	G	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr15	46240330	46240331	chr15:46240331:T:C	rs2899388	T	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr15	46343875	46343876	chr15:46343876:G:C	rs543365089	G	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr15	47214068	47214069	chr15:47214069:T:A	rs12916456	T	A	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr15	47258794	47258795	chr15:47258795:A:G	rs77159975	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr15	47392734	47392735	chr15:47392735:A:C	rs1025142	A	C	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr15	47392738	47392739	chr15:47392739:T:C	rs34488670	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	47394392	47394393	chr15:47394393:C:T	rs11070582	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr15	47613942	47613943	chr15:47613943:A:G	rs10851457	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr15	47624674	47624675	chr15:47624675:G:C	rs1529883	G	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr15	47762921	47762922	chr15:47762922:T:C	rs3743276	T	C	C	Sox1.mouse_HMG_2	4	1	-	4.662673218612251	-2.1587395505478217	CACAATTACATTCAA
chr15	47839242	47839243	chr15:47839243:A:G	rs8035818	A	G	g	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	48224077	48224078	chr15:48224078:G:A	rs1484552	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr15	48232324	48232325	chr15:48232325:G:C	rs1843144	G	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr15	48330195	48330196	chr15:48330196:A:C	rs74014513	A	C	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	48462970	48462971	chr15:48462971:T:C	rs9806595	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr15	48473765	48473766	chr15:48473766:C:T	rs149291366	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr15	48490365	48490366	chr15:48490366:T:C	rs11635140	T	C	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr15	48657512	48657513	chr15:48657513:C:T	rs1857910	C	T	T	Sox1.mouse_HMG_2	8	1	+	6.297747525653288	0.6533208352713011	TGGAATGACAGTCAG
chr15	48805818	48805819	chr15:48805819:C:A	rs1426200	C	A	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	48875798	48875799	chr15:48875799:G:A	rs73402209	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	48945360	48945361	chr15:48945361:C:T	rs4774532	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr15	49045183	49045184	chr15:49045184:T:A	rs2413927	T	A	-	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	49045184	49045185	chr15:49045185:A:T	rs4354871	A	T	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr15	49045832	49045833	chr15:49045833:G:C	rs567296429	G	C	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr15	49076050	49076051	chr15:49076051:A:T	rs189037305	A	T	A	Sox1.mouse_HMG_2	9	1	+	4.772865824065866	-2.135888955249355	CTTAATTACATTCTG
chr15	49146255	49146256	chr15:49146256:T:A	rs78135606	T	A	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr15	49826927	49826928	chr15:49826928:C:T	rs4393520	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	49970300	49970301	chr15:49970301:G:A	rs4349087	G	A	G	Sox1.mouse_HMG_2	7	1	-	4.879970656724461	4.419026203017354	CTGAATACCCTTTAT
chr15	49984869	49984870	chr15:49984870:T:A	rs16963143	T	A	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	50137472	50137473	chr15:50137473:C:T	rs573144717	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr15	50148495	50148496	chr15:50148496:G:A	rs60387657	G	A	G	Sox1.mouse_HMG_2	0	1	-	5.212203205396856	4.946260011627423	CTTAATCCCATTCAT
chr15	50199376	50199377	chr15:50199377:A:G	rs6493415	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	50770543	50770544	chr15:50770544:A:G	rs8038437	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr15	50778961	50778962	chr15:50778962:A:G	rs1003140766	A	G	a	Sox1.mouse_HMG_2	5	1	-	2.788331732116914	-4.120423047198305	ATGACTTGCGGTCAG
chr15	50877171	50877172	chr15:50877172:C:G	rs116222008	C	G	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr15	51044904	51044905	chr15:51044905:C:T	rs12911715	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	51076039	51076040	chr15:51076040:T:C	rs17522120	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr15	51076377	51076378	chr15:51076378:T:C	rs8026318	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr15	51079520	51079521	chr15:51079521:C:A	rs79751744	C	A	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr15	51721469	51721470	chr15:51721470:T:C	rs75943076	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr15	51982388	51982389	chr15:51982389:A:G	chr15:51982389:A:G	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr15	52100857	52100858	chr15:52100858:G:C	rs74013702	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr15	52116026	52116027	chr15:52116027:T:G	rs769739211	T	G	T	Sox1.mouse_HMG_2	11	1	+	4.098177461935855	-2.810577317379365	TTGTATTCCATTCTG
chr15	52134978	52134979	chr15:52134979:G:A	rs533661031	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr15	52144181	52144182	chr15:52144182:T:C	rs115274961	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr15	52144193	52144194	chr15:52144194:C:T	rs4238385	C	T	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr15	52285608	52285609	chr15:52285609:G:C	rs28459428	G	C	-	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	52287141	52287142	chr15:52287142:G:C	chr15:52287142:G:C	G	C	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr15	52289696	52289697	chr15:52289697:C:G	rs79978076	C	G	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	52315206	52315207	chr15:52315207:T:C	rs28618215	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.146666712205034	-2.7620880671101857	TTGGCTGCCATTCAA
chr15	52328265	52328266	chr15:52328266:G:A	rs79553077	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr15	52463309	52463310	chr15:52463310:T:G	rs72738514	T	G	T	Sox1.mouse_HMG_2	11	1	+	6.836814879538526	-0.07193989977669385	AAGAATTTCATTCTG
chr15	52463311	52463312	chr15:52463312:T:A	rs72738516	T	A	T	Sox1.mouse_HMG_2	13	1	+	6.836814879538526	10.03117843269682	AAGAATTTCATTCTG
chr15	52499644	52499645	chr15:52499645:T:G	rs11858875	T	G	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr15	52733494	52733495	chr15:52733495:C:A	rs1648354	C	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	52768958	52768959	chr15:52768959:T:C	rs2440327	T	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr15	53374307	53374308	chr15:53374308:T:C	rs4776139	T	C	C	Sox1.mouse_HMG_2	13	1	-	3.2227651461379616	-1.7233525416346867	CTGATTGGCATTTAT
chr15	53837639	53837640	chr15:53837640:A:G	rs111756449	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr15	53837667	53837668	chr15:53837668:C:T	rs146256943	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.6154838669681792	-2.0289428234138076	GTAAATGACAGTCTC
chr15	54012696	54012697	chr15:54012697:T:C	rs12911018	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	54364751	54364752	chr15:54364752:C:A	rs7162826	C	A	C	Sox1.mouse_HMG_2	9	1	-	3.964764624755643	3.964764624755643	TTGAATAAGGTTCAT
chr15	54688005	54688006	chr15:54688006:C:T	rs12916090	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr15	55008643	55008644	chr15:55008644:G:A	rs138284729	G	A	G	Sox1.mouse_HMG_2	14	1	+	4.5127873596116626	4.348146111716715	GTGATTTACATTCTG
chr15	55035532	55035533	chr15:55035533:T:C	rs11638398	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr15	55035570	55035571	chr15:55035571:T:C	rs17238129	T	C	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr15	55279738	55279739	chr15:55279739:G:A	rs73413677	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr15	55498084	55498085	chr15:55498085:T:C	rs61675921	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr15	55498182	55498183	chr15:55498183:G:C	rs12907654	G	C	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr15	55498215	55498216	chr15:55498216:G:T	rs16976354	G	T	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	55538675	55538676	chr15:55538676:C:T	rs11637694	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr15	55590965	55590966	chr15:55590966:G:A	rs75931561	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	55737598	55737599	chr15:55737599:G:A	rs565353070	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.026013441848677	-2.6184132485333085	ATGACCCTCATTCAT
chr15	55799542	55799543	chr15:55799543:T:C	rs12148407	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr15	55846569	55846570	chr15:55846570:C:T	rs140874639	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.35721123441512	-1.315375869253135	ATGAATGACTTTCGC
chr15	56049286	56049287	chr15:56049287:T:C	rs78791728	T	C	T	Sox1.mouse_HMG_2	1	1	-	7.851655462906128	7.547184283827552	AAGAATGCCATTCTT
chr15	56086705	56086706	chr15:56086706:C:T	rs61466134	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr15	56449979	56449980	chr15:56449980:C:A	rs35978617	C	A	C	Sox1.mouse_HMG_2	0	1	-	3.898079424757963	3.967496257905374	GTGAATAAAATTGAC
chr15	56539671	56539672	chr15:56539672:C:A	rs938621	C	A	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	56539681	56539682	chr15:56539682:C:T	rs938622	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr15	56736653	56736654	chr15:56736654:G:A	rs181187656	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr15	56736686	56736687	chr15:56736687:A:G	rs538023110	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr15	56805055	56805056	chr15:56805056:G:C	rs138759002	G	C	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr15	56886565	56886566	chr15:56886566:G:A	rs114012619	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr15	56886566	56886567	chr15:56886567:C:T	rs116467068	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr15	56948561	56948562	chr15:56948562:A:C	rs4774902	A	C	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr15	56958552	56958553	chr15:56958553:T:C	rs1652732	T	C	C	Sox1.mouse_HMG_2	1	1	+	2.4877049956629183	-2.1562873118303156	GTGACTACCATACTG
chr15	56968683	56968684	chr15:56968684:A:G	rs4774247	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	56993056	56993057	chr15:56993057:A:G	rs12899187	A	G	A	Sox1.mouse_HMG_2	9	1	+	8.646697154405395	1.7379423750901726	AAGACTAGCATTCAG
chr15	57021507	57021508	chr15:57021508:A:G	rs2957576	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	57146641	57146642	chr15:57146642:G:C	chr15:57146642:G:C	G	C	G	Sox1.mouse_HMG_2	14	1	-	3.659336614694533	3.3808808406295308	ACGAAAGACATTCAC
chr15	57219238	57219239	chr15:57219239:C:T	rs147519185	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	57220804	57220805	chr15:57220805:T:A	rs2591062	T	A	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	57251839	57251840	chr15:57251840:T:C	rs1867638	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	57259378	57259379	chr15:57259379:A:C	rs28445470	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr15	57259397	57259398	chr15:57259398:C:T	rs12915489	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.515133011226873	-0.15745409244138153	TAGAATACGATTCAA
chr15	57327912	57327913	chr15:57327913:A:G	rs4774256	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr15	57392626	57392627	chr15:57392627:G:T	rs10518915	G	T	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr15	57519136	57519137	chr15:57519137:G:T	rs62000313	G	T	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr15	57560747	57560748	chr15:57560748:C:A	rs2635388	C	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr15	57571266	57571267	chr15:57571267:C:T	rs8031321	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	57895243	57895244	chr15:57895244:A:G	rs920638	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	58146594	58146595	chr15:58146595:C:A	rs74018956	C	A	C	Sox1.mouse_HMG_2	14	1	-	7.902673171045816	9.055741287833554	ATGAATAAGAGTCAG
chr15	58244584	58244585	chr15:58244585:G:A	rs2414556	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	58244587	58244588	chr15:58244588:C:T	rs190275750	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	58259176	58259177	chr15:58259177:A:G	rs73416428	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.451462665860436	-2.4572921134547836	CTGAGTTCCATTCTG
chr15	58260317	58260318	chr15:58260318:A:G	rs72625727	A	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr15	58260537	58260538	chr15:58260538:G:A	rs35022432	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr15	58360612	58360613	chr15:58360613:C:A	rs146093500	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr15	58378978	58378979	chr15:58378979:C:A	rs10152355	C	A	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr15	58382530	58382531	chr15:58382531:C:G	rs4775042	C	G	G	Sox1.mouse_HMG_2	8	1	+	3.161275977435999	-2.557258685099709	CTGAAATACAGTCTT
chr15	58392837	58392838	chr15:58392838:T:G	rs72475921	T	G	T	Sox1.mouse_HMG_2	11	1	+	3.3247453037630423	-3.584009475552177	ATGACCTACAGTCAA
chr15	58432409	58432410	chr15:58432410:G:A	rs415208	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	58535996	58535997	chr15:58535997:A:G	rs148076190	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr15	58545810	58545811	chr15:58545811:A:G	rs6083	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr15	58545838	58545839	chr15:58545839:C:G	rs6084	C	G	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	58632850	58632851	chr15:58632851:G:C	rs12907237	G	C	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr15	58934107	58934108	chr15:58934108:A:G	rs533793624	A	G	A	Sox1.mouse_HMG_2	9	1	+	2.837192663630548	-4.071562115684673	CCGAGTTCCATTCAA
chr15	59176898	59176899	chr15:59176899:A:G	rs12898967	A	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr15	59299661	59299662	chr15:59299662:G:T	rs66484811	G	T	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr15	59350309	59350310	chr15:59350310:G:T	rs28473476	G	T	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr15	59445193	59445194	chr15:59445194:C:G	rs74017796	C	G	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr15	59615084	59615085	chr15:59615085:G:A	rs143082338	G	A	G	Sox1.mouse_HMG_2	12	1	-	2.5562957906761814	-2.1162913129920735	ATGAATAACCTCCAG
chr15	59656261	59656262	chr15:59656262:T:A	rs7180408	T	A	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	59704807	59704808	chr15:59704808:A:G	rs17191002	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	59919860	59919861	chr15:59919861:T:G	rs77646059	T	G	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr15	60091358	60091359	chr15:60091359:C:A	rs183646877	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr15	60091377	60091378	chr15:60091378:C:A	rs77033272	C	A	C	Sox1.mouse_HMG_2	12	1	+	6.546993580112096	-0.3534550703542688	CTGAATTCCAGTCCT
chr15	60255334	60255335	chr15:60255335:G:A	rs931971	G	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	60255790	60255791	chr15:60255791:A:C	rs1858189	A	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	60902034	60902035	chr15:60902035:A:G	rs2899663	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr15	60977259	60977260	chr15:60977260:C:T	rs4638514	C	T	T	Sox1.mouse_HMG_2	2	1	-	9.768737559702542	5.123335026686326	CTGAATTGCATTTAC
chr15	60987053	60987054	chr15:60987054:T:C	rs16943429	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	60999939	60999940	chr15:60999940:T:G	rs7167514	T	G	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr15	60999952	60999953	chr15:60999953:T:C	rs68016289	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr15	61037588	61037589	chr15:61037589:A:G	rs809736	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr15	61480351	61480352	chr15:61480352:T:G	rs56810547	T	G	T	Sox1.mouse_HMG_2	10	1	+	4.348945375061709	1.5963478593366114	ATGACTAGCATTGTT
chr15	61668900	61668901	chr15:61668901:C:G	rs2249570	C	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr15	61835797	61835798	chr15:61835798:G:C	rs7179032	G	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr15	61856845	61856846	chr15:61856846:T:C	rs1052306	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr15	61950544	61950545	chr15:61950545:G:A	rs72749709	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.347703492723343	-0.32488361094491147	TTGAATGGCTTTCTT
chr15	61955520	61955521	chr15:61955521:A:T	rs8027751	A	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr15	62047774	62047775	chr15:62047775:T:C	rs78645269	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr15	62323647	62323648	chr15:62323648:A:T	rs459259	A	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr15	62533997	62533998	chr15:62533998:G:A	rs17738626	G	A	g	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr15	62569746	62569747	chr15:62569747:G:A	rs879925874	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr15	62626055	62626056	chr15:62626056:C:A	rs7176471	C	A	A	Sox1.mouse_HMG_2	8	1	+	3.3109505482898687	-1.5385462672222303	TTGACTTCCAGCCAT
chr15	62770702	62770703	chr15:62770703:T:C	rs938981	T	C	T	Sox1.mouse_HMG_2	13	1	+	6.43589119980398	3.309538743832926	TTGAATTCAATTCTC
chr15	62897832	62897833	chr15:62897833:G:A	rs184709679	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	62897835	62897836	chr15:62897836:T:G	rs11634431	T	G	g	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr15	62901863	62901864	chr15:62901864:G:A	rs8042820	G	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr15	62972933	62972934	chr15:62972934:C:T	rs2414808	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	63046557	63046558	chr15:63046558:T:C	rs8026502	T	C	T	Sox1.mouse_HMG_2	10	1	-	5.375514707068793	9.470858769623975	CTGAATGACAATCTT
chr15	63232612	63232613	chr15:63232613:G:A	rs146122405	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.132832188512386	-0.5115945018696019	TTAAATGGCATTTAT
chr15	63250464	63250465	chr15:63250465:C:T	rs543860856	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr15	63251955	63251956	chr15:63251956:A:G	rs111247008	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr15	63256587	63256588	chr15:63256588:G:A	rs10851726	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	64009916	64009917	chr15:64009917:C:T	rs570238580	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr15	64217444	64217445	chr15:64217445:A:G	rs77843340	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.246896973994317	-2.661857805320904	ATGAATTTCCTTTAT
chr15	64249581	64249582	chr15:64249582:C:A	rs16947844	C	A	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr15	64542922	64542923	chr15:64542923:A:G	rs2733386	A	G	g	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	64624198	64624199	chr15:64624199:G:A	rs970523085	G	A	g	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr15	64683671	64683672	chr15:64683672:A:C	rs561722212	A	C	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	65584117	65584118	chr15:65584118:G:A	rs148312314	G	A	g	Sox1.mouse_HMG_2	2	1	+	3.2318417512633686	-1.4135607817528504	CTGAATACCATGCCT
chr15	66142951	66142952	chr15:66142952:G:A	rs8023772	G	A	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	66180803	66180804	chr15:66180804:C:T	rs16949618	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	66353752	66353753	chr15:66353753:A:G	rs8031897	A	G	-	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	66391643	66391644	chr15:66391644:A:C	rs149710465	A	C	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	66401529	66401530	chr15:66401530:G:C	rs35945138	G	C	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr15	66405796	66405797	chr15:66405797:T:C	rs202150689	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	66405814	66405815	chr15:66405815:A:G	rs986582032	A	G	A	Sox1.mouse_HMG_2	9	1	+	8.146356270954795	1.237601491639576	AGGAATTCCATTCTT
chr15	66405833	66405834	chr15:66405834:G:A	rs891848	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	66556599	66556600	chr15:66556600:C:T	rs12437980	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr15	66629624	66629625	chr15:66629625:G:C	rs4776806	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	66721917	66721918	chr15:66721918:G:C	rs536640883	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr15	66751334	66751335	chr15:66751335:A:G	rs572696436	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	66754457	66754458	chr15:66754458:G:A	rs12906898	G	A	g	Sox1.mouse_HMG_2	10	1	+	4.867211386889709	0.7718673243345262	GTGAATTACAGCCAG
chr15	66814970	66814971	chr15:66814971:T:C	rs7170990	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr15	66919669	66919670	chr15:66919670:C:A	rs190313898	C	A	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr15	66947581	66947582	chr15:66947582:A:T	rs266389	A	T	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr15	67026203	67026204	chr15:67026204:T:C	rs35841291	T	C	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr15	67101780	67101781	chr15:67101781:T:C	rs6494630	T	C	C	Sox1.mouse_HMG_2	9	1	-	6.200765929408426	-0.7079888499067944	AGAAATATCATTCAC
chr15	67174680	67174681	chr15:67174681:G:C	rs537056315	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr15	67175946	67175947	chr15:67175947:A:G	rs17294280	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	67203027	67203028	chr15:67203028:A:G	rs78142207	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr15	67510232	67510233	chr15:67510233:G:A	rs3098770	G	A	A	Sox1.mouse_HMG_2	8	1	-	6.672173631643578	1.0277469412615918	ACGAATTTCATTCTA
chr15	67616940	67616941	chr15:67616941:G:A	rs12902812	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	67803682	67803683	chr15:67803683:G:T	rs58551615	G	T	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr15	67808284	67808285	chr15:67808285:C:T	rs1871307	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	67910130	67910131	chr15:67910131:G:A	rs58511468	G	A	G	Sox1.mouse_HMG_2	14	1	-	4.009489763973126	4.884102106695862	AAGAATACAAGTCAC
chr15	67968541	67968542	chr15:67968542:T:C	rs191863777	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.408739819840962	3.4045035872057596	AGGACTGACATTCTG
chr15	68273078	68273079	chr15:68273079:A:G	rs114560020	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr15	68319738	68319739	chr15:68319739:C:T	rs58296003	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	68409311	68409312	chr15:68409312:A:G	rs17320635	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr15	68442387	68442388	chr15:68442388:A:C	rs11638741	A	C	C	Sox1.mouse_HMG_2	3	1	+	4.085930184917898	-2.8228245943973223	ATGACTGACATTTGT
chr15	68489242	68489243	chr15:68489243:A:T	rs7169418	A	T	A	Sox1.mouse_HMG_2	13	1	+	7.2911755773463955	4.096812024188103	TGGAATCACATTCAT
chr15	69019727	69019728	chr15:69019728:T:C	rs311910	T	C	C	Sox1.mouse_HMG_2	1	1	+	3.0908073290755977	-1.5531849784176361	TTGAATGGCAATCTA
chr15	69064438	69064439	chr15:69064439:A:G	rs118058981	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	69154091	69154092	chr15:69154092:G:T	rs34906652	G	T	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	69243618	69243619	chr15:69243619:T:C	rs11629932	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr15	69262824	69262825	chr15:69262825:G:A	rs535040487	G	A	g	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	69289202	69289203	chr15:69289203:G:C	rs140897318	G	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr15	69309033	69309034	chr15:69309034:G:T	rs62008445	G	T	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr15	69403972	69403973	chr15:69403973:G:T	rs3743096	G	T	G	Sox1.mouse_HMG_2	0	1	-	8.991046603549457	9.659922809267812	CTGAATAACATTTTT
chr15	69530790	69530791	chr15:69530791:G:A	rs35143490	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.5768937420593	-2.0675329483226865	CTGACATCCAGTCAT
chr15	69594044	69594045	chr15:69594045:C:A	rs28473707	C	A	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr15	69724952	69724953	chr15:69724953:C:T	rs76891576	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr15	69750548	69750549	chr15:69750549:A:T	rs7182742	A	T	A	Sox1.mouse_HMG_2	8	1	+	3.596112316369788	2.8011824414999	TTGAATTCATTTCAT
chr15	69799957	69799958	chr15:69799958:C:A	rs305053	C	A	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	69930321	69930322	chr15:69930322:G:C	rs4776486	G	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr15	70036575	70036576	chr15:70036576:G:A	rs117381768	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.076813820646589	-0.5676128697353969	AAGAATCGCAGTCAT
chr15	70154443	70154444	chr15:70154444:T:G	rs76226818	T	G	T	Sox1.mouse_HMG_2	5	1	+	5.8597001044077235	-1.0490546749074974	ATAAATAGCATTCCT
chr15	70258607	70258608	chr15:70258608:G:A	rs11072154	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr15	70305151	70305152	chr15:70305152:C:A	rs72751588	C	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr15	70319290	70319291	chr15:70319291:C:T	rs74021724	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr15	70354646	70354647	chr15:70354647:C:T	rs746800731	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr15	70427602	70427603	chr15:70427603:T:G	rs74021788	T	G	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr15	70464617	70464618	chr15:70464618:C:T	rs4412933	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr15	70795672	70795673	chr15:70795673:C:T	rs77947974	C	T	T	Sox1.mouse_HMG_2	10	1	-	4.078999045661944	-0.016345016893239583	TTGAAGTTCAGTCAG
chr15	70812758	70812759	chr15:70812759:C:G	rs9806539	C	G	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr15	71114438	71114439	chr15:71114439:G:C	rs116208235	G	C	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr15	71386207	71386208	chr15:71386208:C:G	rs2044028	C	G	C	Sox1.mouse_HMG_2	7	1	+	4.754144828181136	4.44977472930813	TTGACTTCCATTAAA
chr15	71469687	71469688	chr15:71469688:C:T	rs12913263	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr15	71547966	71547967	chr15:71547967:A:G	rs8023639	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	71647331	71647332	chr15:71647332:A:T	rs2062651	A	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr15	71957279	71957280	chr15:71957280:T:C	rs1871834	T	C	c	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr15	72227423	72227424	chr15:72227424:G:A	rs187846679	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	72670859	72670860	chr15:72670860:A:C	rs184544416	A	C	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr15	72857874	72857875	chr15:72857875:G:C	rs28535571	G	C	G	Sox1.mouse_HMG_2	7	1	-	6.329491257784397	6.025121158911392	CTGTCTTCCATTCAT
chr15	72857994	72857995	chr15:72857995:T:G	rs12442394	T	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	73174263	73174264	chr15:73174264:A:G	rs9806271	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr15	73284141	73284142	chr15:73284142:T:C	rs148608471	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	73636765	73636766	chr15:73636766:G:C	rs188768204	G	C	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr15	73663080	73663081	chr15:73663081:A:T	rs533135057	A	T	A	Sox1.mouse_HMG_2	10	1	-	5.1122501608385695	-1.7356914174417115	TTCAATTCAATTCAT
chr15	73720067	73720068	chr15:73720068:T:C	rs1038093	T	C	t	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr15	73785455	73785456	chr15:73785456:C:T	rs2009335	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr15	74184288	74184289	chr15:74184289:A:C	rs351239	A	C	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr15	74216497	74216498	chr15:74216498:C:A	rs72747617	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr15	74636900	74636901	chr15:74636901:A:G	rs76160708	A	G	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	74959220	74959221	chr15:74959221:A:T	rs74400918	A	T	A	Sox1.mouse_HMG_2	9	1	+	4.572737925782029	-2.336016853533191	AAGACTCGCATTCAC
chr15	75008281	75008282	chr15:75008282:G:C	rs7181942	G	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr15	75097955	75097956	chr15:75097956:T:C	rs71401675	T	C	T	Sox1.mouse_HMG_2	14	1	+	9.772549960096475	8.89793761737374	ATTAATATCATTCAT
chr15	75112444	75112445	chr15:75112445:C:T	rs148202658	C	T	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	75441812	75441813	chr15:75441813:T:A	rs80319944	T	A	T	Sox1.mouse_HMG_2	13	1	-	3.9238199656790376	0.7294564125207453	CTGATTGACATTTAT
chr15	75454221	75454222	chr15:75454222:G:A	rs139658622	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.174145969541683	-0.49844113412657143	TTGGATGACATTCTC
chr15	75462143	75462144	chr15:75462144:A:C	rs115522398	A	C	A	Sox1.mouse_HMG_2	1	1	-	6.247572129032916	1.299108642461106	GTGAGTAGCAGTCAT
chr15	75577438	75577439	chr15:75577439:A:T	rs980282509	A	T	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr15	75817081	75817082	chr15:75817082:A:T	rs74372903	A	T	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr15	75988158	75988159	chr15:75988159:C:T	rs74024041	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	76012300	76012301	chr15:76012301:C:T	rs3764189	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	76168503	76168504	chr15:76168504:T:C	rs58863068	T	C	T	Sox1.mouse_HMG_2	14	1	+	8.07953746748057	7.204925124757834	GTGAATTAAAGTCAT
chr15	76429979	76429980	chr15:76429980:T:C	rs284891	T	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr15	76433978	76433979	chr15:76433979:T:G	rs16968215	T	G	T	Sox1.mouse_HMG_2	4	1	-	4.109913532776887	1.7278524649099674	CACAATGCCATTCAC
chr15	77035366	77035367	chr15:77035367:T:C	rs1051322112	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.532538731894286	-2.3154028463859953	ATAAATGACATCCAT
chr15	77163772	77163773	chr15:77163773:T:C	rs12899826	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr15	77536833	77536834	chr15:77536834:A:G	rs4886873	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	77863895	77863896	chr15:77863896:C:A	rs8032467	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr15	77910690	77910691	chr15:77910691:G:A	chr15:77910691:G:A	G	A	g	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	77910690	77910691	chr15:77910691:G:T	rs12902025	G	T	g	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	77910716	77910717	chr15:77910717:T:C	rs12902944	T	C	t	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr15	77910723	77910724	chr15:77910724:G:A	rs7178594	G	A	g	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr15	78208455	78208456	chr15:78208456:C:T	rs60968764	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	78215275	78215276	chr15:78215276:G:A	rs118042195	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr15	78239190	78239191	chr15:78239191:T:C	rs1969341	T	C	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr15	78244866	78244867	chr15:78244867:A:G	rs4619364	A	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	78254560	78254561	chr15:78254561:G:A	rs7183158	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	78298112	78298113	chr15:78298113:A:T	rs8026257	A	T	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr15	78322449	78322450	chr15:78322450:T:C	chr15:78322450:T:C	T	C	T	Sox1.mouse_HMG_2	2	1	-	5.3010708635320585	9.946473396548276	GTAAATATGATTCAT
chr15	78362002	78362003	chr15:78362003:C:G	rs72736777	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr15	78390953	78390954	chr15:78390954:G:A	rs778116075	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr15	78397326	78397327	chr15:78397327:G:A	rs3825849	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr15	78402577	78402578	chr15:78402578:T:C	rs76634819	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	78677916	78677917	chr15:78677917:T:C	rs16970006	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.849177197254788	0.2051848897615537	ATGTATTTCAGTCAA
chr15	78738156	78738157	chr15:78738157:C:T	rs11852909	C	T	-	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr15	78738183	78738184	chr15:78738184:T:G	rs11856441	T	G	-	Sox1.mouse_HMG_2	11	1	+	12.363633694376885	5.454878915061663	CTGACTTCCATTCAC
chr15	78738200	78738201	chr15:78738201:G:A	rs142705205	G	A	-	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	78772828	78772829	chr15:78772829:A:C	rs3743063	A	C	N	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr15	78893555	78893556	chr15:78893556:C:A	rs1435163	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr15	78910867	78910868	chr15:78910868:T:C	rs62013196	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr15	78926485	78926486	chr15:78926486:G:A	rs76893083	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr15	78937649	78937650	chr15:78937650:G:C	rs145508218	G	C	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr15	79052034	79052035	chr15:79052035:C:T	rs77773016	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr15	79052038	79052039	chr15:79052039:G:A	rs187128630	G	A	G	Sox1.mouse_HMG_2	0	1	+	6.020279503677448	7.024515736312651	GTGAATTACAGCCAT
chr15	79104177	79104178	chr15:79104178:C:T	rs4778637	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	79118367	79118368	chr15:79118368:T:C	rs2102999	T	C	C	Sox1.mouse_HMG_2	9	1	-	3.987811596523239	-2.9209431827919805	ATCAAGTCCATTCAT
chr15	79169173	79169174	chr15:79169174:A:G	rs11072826	A	G	A	Sox1.mouse_HMG_2	0	1	+	6.106045768938162	5.101809536302963	ATGAATAACATGCTA
chr15	79248397	79248398	chr15:79248398:A:G	rs7170918	A	G	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	79381094	79381095	chr15:79381095:T:C	rs2174821	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr15	79454009	79454010	chr15:79454010:A:G	rs7166224	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.852984642402422	-0.9684281267576512	CAAAATTACATTCAC
chr15	79738643	79738644	chr15:79738644:T:C	rs28386490	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr15	79848392	79848393	chr15:79848393:T:C	rs62027983	T	C	T	Sox1.mouse_HMG_2	14	1	+	3.693957574606127	2.819345231883391	CAGAGTTTCATTCAT
chr15	79924757	79924758	chr15:79924758:A:G	rs2115534	A	G	A	Sox1.mouse_HMG_2	7	1	+	5.510146326105254	4.809091506564178	TTGACTCACATTCTG
chr15	80118902	80118903	chr15:80118903:G:A	rs62006309	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	80118924	80118925	chr15:80118925:T:C	rs34036416	T	C	C	Sox1.mouse_HMG_2	3	1	-	4.398459217022097	-2.510295562293124	AAGAAAAGCATTCAC
chr15	80122375	80122376	chr15:80122376:A:C	rs11635107	A	C	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr15	80198423	80198424	chr15:80198424:G:C	rs7166331	G	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr15	80200266	80200267	chr15:80200267:C:T	rs75884791	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr15	80200269	80200270	chr15:80200270:A:G	rs561661246	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	80342702	80342703	chr15:80342703:T:C	rs11632998	T	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr15	80351705	80351706	chr15:80351706:C:T	rs28678947	C	T	c	Sox1.mouse_HMG_2	12	1	+	5.247186792050516	0.5745996883822609	TTCAATGACATTCTA
chr15	80401634	80401635	chr15:80401635:G:A	rs1446340	G	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	80424118	80424119	chr15:80424119:G:A	rs56313934	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr15	80455931	80455932	chr15:80455932:G:A	rs917820310	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr15	80455933	80455934	chr15:80455934:G:T	rs183929440	G	T	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr15	80503203	80503204	chr15:80503204:G:A	rs78341438	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	80503786	80503787	chr15:80503787:A:G	rs4238521	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr15	80542178	80542179	chr15:80542179:T:C	rs7169055	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	80586427	80586428	chr15:80586428:T:C	rs8043374	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	80609656	80609657	chr15:80609657:C:T	rs74569007	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	80643617	80643618	chr15:80643618:C:T	rs370703874	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr15	80696830	80696831	chr15:80696831:C:T	rs34769775	C	T	C	Sox1.mouse_HMG_2	10	1	-	7.767474785434228	3.672130722879043	GTGAATAAAAGTCAG
chr15	80761211	80761212	chr15:80761212:A:C	rs112356517	A	C	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	80761236	80761237	chr15:80761237:C:T	rs2759317	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr15	80811445	80811446	chr15:80811446:A:G	rs73497055	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr15	81086174	81086175	chr15:81086175:G:A	rs766993917	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr15	81323767	81323768	chr15:81323768:G:A	rs4277306	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr15	81469494	81469495	chr15:81469495:A:T	rs74028686	A	T	T	Sox1.mouse_HMG_2	14	1	-	3.813677272081161	2.495967907398475	TCTAATTCCATTCAT
chr15	81511252	81511253	chr15:81511253:T:A	rs74028701	T	A	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr15	81604807	81604808	chr15:81604808:T:C	rs143746353	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.849177197254787	-0.09694049051786136	ATGAAATTCAGTCAA
chr15	81605952	81605953	chr15:81605953:T:A	rs1482940	T	A	A	Sox1.mouse_HMG_2	4	1	-	7.570996789159151	0.7495840199990779	TTGAATTCCCTTCAC
chr15	82083020	82083021	chr15:82083021:T:C	rs76698881	T	C	T	Sox1.mouse_HMG_2	7	1	-	8.441550345208809	7.7404955256677335	TTCAATGACATTCAA
chr15	82338740	82338741	chr15:82338741:T:C	rs62012745	T	C	N	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr15	82338746	82338747	chr15:82338747:G:C	rs561547274	G	C	g	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr15	82342828	82342829	chr15:82342829:A:C	rs62010119	A	C	a	Sox1.mouse_HMG_2	5	1	-	4.918016785365782	-1.990737993949438	CTGCATGCCATTCTT
chr15	82530801	82530802	chr15:82530802:A:T	rs34325123	A	T	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	82538981	82538982	chr15:82538982:A:G	rs6991	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr15	82600339	82600340	chr15:82600340:G:A	rs783528	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr15	82937247	82937248	chr15:82937248:T:C	rs114454438	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr15	83288069	83288070	chr15:83288070:T:C	rs12439122	T	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	83733444	83733445	chr15:83733445:A:G	rs10162825	A	G	A	Sox1.mouse_HMG_2	1	1	-	2.966587751297747	-1.6774045561954856	GTGACTCACAGTCTC
chr15	83859412	83859413	chr15:83859413:G:T	rs35340858	G	T	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr15	84391055	84391056	chr15:84391056:A:T	rs114891423	A	T	.	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	84630409	84630410	chr15:84630410:A:G	rs73449310	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	84643405	84643406	chr15:84643406:G:C	rs510875	G	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr15	84864332	84864333	chr15:84864333:A:C	rs2289138	A	C	C	Sox1.mouse_HMG_2	7	1	+	7.843275938066241	7.446591217398171	GAGAATTACATTCTT
chr15	84873167	84873168	chr15:84873168:G:A	rs67395065	G	A	G	Sox1.mouse_HMG_2	14	1	-	3.254272369186576	4.128884711909312	GAGAAATACATTCAC
chr15	85025650	85025651	chr15:85025651:T:C	rs59143550	T	C	T	Sox1.mouse_HMG_2	4	1	-	10.61811868677914	3.7967059176190685	ATGAATAACTTTCAT
chr15	85031812	85031813	chr15:85031813:G:A	rs289389	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr15	85045432	85045433	chr15:85045433:G:A	rs7174722	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr15	85047269	85047270	chr15:85047270:T:C	rs12909130	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	85106718	85106719	chr15:85106719:G:C	rs79199733	G	C	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr15	85125412	85125413	chr15:85125413:G:T	rs6496728	G	T	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr15	85296935	85296936	chr15:85296936:T:C	rs13379676	T	C	c	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr15	85296970	85296971	chr15:85296971:C:T	rs543171319	C	T	c	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr15	85340933	85340934	chr15:85340934:C:T	rs1473043	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr15	85349058	85349059	chr15:85349059:A:G	rs8031401	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr15	85388793	85388794	chr15:85388794:G:A	rs11074191	G	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr15	85423668	85423669	chr15:85423669:G:T	rs34159880	G	T	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr15	85536519	85536520	chr15:85536520:G:A	rs11636764	G	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr15	85617209	85617210	chr15:85617210:A:T	rs11638762	A	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr15	85681338	85681339	chr15:85681339:G:A	rs12909648	G	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr15	85700955	85700956	chr15:85700956:C:A	rs180192	C	A	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr15	85742508	85742509	chr15:85742509:C:T	rs17576534	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	85759051	85759052	chr15:85759052:A:G	rs888368	A	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr15	85815061	85815062	chr15:85815062:C:G	rs16944778	C	G	C	Sox1.mouse_HMG_2	2	1	-	15.532799914565231	10.14018297971879	ATGAATTACATTCAG
chr15	85824535	85824536	chr15:85824536:C:T	rs2937940	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr15	85984309	85984310	chr15:85984310:C:T	rs11073611	C	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr15	86183362	86183363	chr15:86183363:T:C	rs1348533	T	C	C	Sox1.mouse_HMG_2	4	1	-	3.739415120232292	-3.081997648927782	TTGAATACCTTTTAC
chr15	86295847	86295848	chr15:86295848:T:C	rs34896531	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr15	86527458	86527459	chr15:86527459:A:G	rs7173672	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.0871724141468713	-3.76076916413341	GTGAACAGCATTTAG
chr15	86555130	86555131	chr15:86555131:T:A	rs76580790	T	A	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr15	86556138	86556139	chr15:86556139:A:G	rs73459654	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	86885810	86885811	chr15:86885811:A:G	rs74027145	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr15	87117830	87117831	chr15:87117831:C:T	rs2133570	C	T	C	Sox1.mouse_HMG_2	9	1	-	3.5284229587976186	10.437177738112839	AGGAATGGCGTTCAT
chr15	87117848	87117849	chr15:87117849:A:G	rs2133571	A	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr15	87152151	87152152	chr15:87152152:C:G	rs145607086	C	G	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	87583059	87583060	chr15:87583060:A:C	rs10520662	A	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr15	88022948	88022949	chr15:88022949:G:T	chr15:88022949:G:T	G	T	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	88382473	88382474	chr15:88382474:A:G	rs8031603	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	88463911	88463912	chr15:88463912:T:C	rs16941883	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr15	88647816	88647817	chr15:88647817:G:C	rs113201793	G	C	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr15	88674865	88674866	chr15:88674866:G:C	rs35264514	G	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr15	88907713	88907714	chr15:88907714:G:C	rs35699851	G	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr15	88936930	88936931	chr15:88936931:T:C	rs35760425	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.279327763753862	-1.629427015561359	CACAATTGCATTCAT
chr15	88975200	88975201	chr15:88975201:A:T	rs12899970	A	T	A	Sox1.mouse_HMG_2	4	1	+	10.20469210112531	3.3832793319652383	CTGAATGGCATTCTA
chr15	89109320	89109321	chr15:89109321:G:A	rs293385	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr15	89109340	89109341	chr15:89109341:A:G	rs293384	A	G	A	Sox1.mouse_HMG_2	3	1	+	8.532052025450023	1.6232972461348016	CTGACTACCATTTAC
chr15	89109357	89109358	chr15:89109358:C:T	rs117710283	C	T	C	Sox1.mouse_HMG_2	0	1	+	7.4634950040033505	7.197551810233918	CTAAATCCCATTCAT
chr15	89335806	89335807	chr15:89335807:C:G	rs539290105	C	G	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	89729838	89729839	chr15:89729839:A:G	rs12148067	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr15	89740170	89740171	chr15:89740171:T:C	rs187727500	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.555525698152164	3.5512894655169616	ATAACTACCATTTAC
chr15	89825915	89825916	chr15:89825916:T:G	rs11634658	T	G	T	Sox1.mouse_HMG_2	3	1	-	2.4604596863281603	-4.44829509298706	GTGACTAGCAGACAA
chr15	89851965	89851966	chr15:89851966:G:A	rs8035374	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr15	90043075	90043076	chr15:90043076:C:G	rs28635283	C	G	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	90043118	90043119	chr15:90043119:G:A	rs11856884	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr15	90043122	90043123	chr15:90043123:C:T	rs139419747	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr15	90059003	90059004	chr15:90059004:T:C	rs59784733	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr15	90094090	90094091	chr15:90094091:C:T	rs36118949	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr15	90244496	90244497	chr15:90244497:T:C	rs80350217	T	C	t	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr15	90281954	90281955	chr15:90281955:C:G	rs74753905	C	G	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr15	90347686	90347687	chr15:90347687:A:T	rs138129953	A	T	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	90539953	90539954	chr15:90539954:C:T	rs7174198	C	T	c	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr15	90745377	90745378	chr15:90745378:G:A	rs56087533	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	90987444	90987445	chr15:90987445:G:A	rs8026781	G	A	g	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr15	90995689	90995690	chr15:90995690:C:T	rs78029804	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	91101891	91101892	chr15:91101892:C:G	rs4423396	C	G	G	Sox1.mouse_HMG_2	7	1	-	4.968600380666258	5.272970479539263	AGGAAAAGCATTCAT
chr15	91218769	91218770	chr15:91218770:A:G	rs8043369	A	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	91413292	91413293	chr15:91413293:C:T	rs8029856	C	T	T	Sox1.mouse_HMG_2	0	1	+	4.3449422394313775	4.078999045661945	CTGAATTTCAGACAG
chr15	91421066	91421067	chr15:91421067:C:T	rs4932488	C	T	T	Sox1.mouse_HMG_2	2	1	-	2.423825625271563	-2.2215769077446548	CTGACTTCCAGACAG
chr15	91789308	91789309	chr15:91789309:C:T	rs12440455	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr15	91792149	91792150	chr15:91792150:C:T	rs60021292	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr15	91855252	91855253	chr15:91855253:C:G	rs7179294	C	G	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	91857496	91857497	chr15:91857497:G:A	rs116309622	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr15	92097780	92097781	chr15:92097781:A:G	chr15:92097781:A:G	A	G	A	Sox1.mouse_HMG_2	4	1	+	7.352664880557698	0.5312521113976248	AAGAATATCATTTAT
chr15	92194203	92194204	chr15:92194204:C:T	rs6496906	C	T	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr15	92196508	92196509	chr15:92196509:T:C	rs9921022	T	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr15	92205045	92205046	chr15:92205046:A:T	rs11074050	A	T	T	Sox1.mouse_HMG_2	14	1	-	3.101300902780504	1.7835915380978178	CTGAATAACAAGCAT
chr15	92307145	92307146	chr15:92307146:G:A	rs12917209	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	92451176	92451177	chr15:92451177:A:G	rs8032091	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr15	92604346	92604347	chr15:92604347:A:G	rs397611	A	G	G	Sox1.mouse_HMG_2	0	1	+	8.956636077654345	7.952399845019144	ATGAATTTGATTCAG
chr15	92609756	92609757	chr15:92609757:C:T	rs397896	C	T	T	Sox1.mouse_HMG_2	10	1	-	6.323460916771575	2.228116854216391	ATGAATTGCAGCCAT
chr15	92773517	92773518	chr15:92773518:T:C	rs4411466	T	C	T	Sox1.mouse_HMG_2	0	1	+	6.092251013464989	6.358194207234422	TTGAACACCATTCTT
chr15	92886415	92886416	chr15:92886416:A:G	rs1439620	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	92902552	92902553	chr15:92902553:G:A	rs12901651	G	A	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr15	93034805	93034806	chr15:93034806:C:T	rs62021472	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr15	93041191	93041192	chr15:93041192:C:T	rs4778075	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	93210203	93210204	chr15:93210204:C:T	rs1176607199	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr15	93253487	93253488	chr15:93253488:C:T	rs12915711	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr15	93297162	93297163	chr15:93297163:C:A	rs6497060	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr15	93467842	93467843	chr15:93467843:A:G	rs56858454	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr15	93477507	93477508	chr15:93477508:T:A	rs72758037	T	A	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr15	93546627	93546628	chr15:93546628:A:G	rs2130111	A	G	A	Sox1.mouse_HMG_2	4	1	+	6.06263301829625	-0.7587797508638218	GTCAATGACAGTCAC
chr15	93587562	93587563	chr15:93587563:T:G	rs4777918	T	G	G	Sox1.mouse_HMG_2	13	1	-	4.038872596909365	-2.281843412219982	TTGAATAATATCCAT
chr15	93587592	93587593	chr15:93587593:T:C	rs4777919	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr15	93689722	93689723	chr15:93689723:C:T	rs11635366	C	T	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr15	93720047	93720048	chr15:93720048:A:G	rs6416593	A	G	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr15	93773087	93773088	chr15:93773088:G:T	rs59830171	G	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr15	93825868	93825869	chr15:93825869:A:C	rs8042094	A	C	C	Sox1.mouse_HMG_2	11	1	-	3.0956510980779934	-3.813103681237227	ATGGTTAGCATTCAT
chr15	93825893	93825894	chr15:93825894:C:T	rs8041512	C	T	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr15	93865597	93865598	chr15:93865598:C:T	rs28417566	C	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	93865620	93865621	chr15:93865621:A:C	rs35966742	A	C	C	Sox1.mouse_HMG_2	10	1	-	4.68985392825097	1.9372564125258727	ATGACTTGGATTCTT
chr15	93865700	93865701	chr15:93865701:A:C	rs12902592	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr15	93889924	93889925	chr15:93889925:C:T	rs7162038	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	93929985	93929986	chr15:93929986:G:A	rs112013747	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.598033842380782	1.9536071519987952	ATGACTCACATTCTT
chr15	94076013	94076014	chr15:94076014:G:A	rs7169001	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr15	94106141	94106142	chr15:94106142:G:T	rs76485258	G	T	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	94287817	94287818	chr15:94287818:C:T	rs532602912	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	94369754	94369755	chr15:94369755:G:A	rs3784654	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr15	94453320	94453321	chr15:94453321:T:C	rs17549574	T	C	T	Sox1.mouse_HMG_2	5	1	+	6.0787532694892805	-0.8300015098259403	GTGACTAACATCCAG
chr15	94453338	94453339	chr15:94453339:G:T	rs534745841	G	T	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr15	94601152	94601153	chr15:94601153:A:G	rs2291995	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr15	94606108	94606109	chr15:94606109:C:T	rs80135573	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr15	94724022	94724023	chr15:94724023:C:T	rs58868505	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr15	94770719	94770720	chr15:94770720:A:G	rs12440283	A	G	G	Sox1.mouse_HMG_2	7	1	-	8.694763405771376	9.155707859478483	ATGATTATCATTCAG
chr15	95265604	95265605	chr15:95265605:A:G	rs4523881	A	G	G	Sox1.mouse_HMG_2	13	1	+	2.702281399336565	-2.2438362884360834	CTGACTTCCTGTCAC
chr15	95301229	95301230	chr15:95301230:T:C	rs77778563	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr15	95301246	95301247	chr15:95301247:A:G	rs61566262	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.483008824638161	-3.4257459546770583	CAGACTGCCATTCTA
chr15	95303882	95303883	chr15:95303883:C:T	rs139290612	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr15	95394861	95394862	chr15:95394862:T:C	rs546551141	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr15	95454192	95454193	chr15:95454193:C:T	rs11634763	C	T	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr15	95647410	95647411	chr15:95647411:T:A	rs16975484	T	A	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr15	95647425	95647426	chr15:95647426:T:C	rs1442418	T	C	C	Sox1.mouse_HMG_2	3	1	-	4.428817872132418	-2.4799369071828035	GGGACTATCAGTCAG
chr15	95710013	95710014	chr15:95710014:A:G	rs17506333	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr15	96047620	96047621	chr15:96047621:C:T	rs8027095	C	T	C	Sox1.mouse_HMG_2	7	1	+	5.524583133652776	5.063638679945669	ATGACTGCCTTTCAC
chr15	96159214	96159215	chr15:96159215:A:C	rs146021825	A	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr15	96252206	96252207	chr15:96252207:T:G	rs1019025065	T	G	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr15	96253713	96253714	chr15:96253714:A:G	rs76570269	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	96253717	96253718	chr15:96253718:T:C	rs1866095	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr15	96582435	96582436	chr15:96582436:A:G	rs34040697	A	G	G	Sox1.mouse_HMG_2	5	1	-	2.9047878531953812	-4.0039669261198405	GTGAATACCATTACT
chr15	96765357	96765358	chr15:96765358:T:C	rs2895446	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr15	96969894	96969895	chr15:96969895:A:T	rs74036265	A	T	A	Sox1.mouse_HMG_2	9	1	+	5.339761907849961	-1.5689928714652601	AGAAATGACATTCAG
chr15	97008395	97008396	chr15:97008396:G:C	rs4965066	G	C	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr15	97461837	97461838	chr15:97461838:T:C	rs141970860	T	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr15	97504723	97504724	chr15:97504724:C:G	rs77172209	C	G	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr15	97804449	97804450	chr15:97804450:G:A	rs1907464	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr15	98289868	98289869	chr15:98289869:A:T	rs1023780	A	T	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr15	98369174	98369175	chr15:98369175:G:T	rs75861517	G	T	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	98520175	98520176	chr15:98520176:A:G	rs7176797	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr15	98584166	98584167	chr15:98584167:C:T	rs11247357	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr15	98618282	98618283	chr15:98618283:G:C	rs112745354	G	C	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr15	98651666	98651667	chr15:98651667:C:G	rs2871865	C	G	C	Sox1.mouse_HMG_2	2	1	-	3.7987878402280453	-1.5938290946183922	AAGAATATCCTTCAA
chr15	98726053	98726054	chr15:98726054:G:C	rs72767973	G	C	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr15	98734663	98734664	chr15:98734664:A:G	rs45557931	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr15	98746377	98746378	chr15:98746378:G:C	rs59350108	G	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr15	98746397	98746398	chr15:98746398:T:G	rs76414474	T	G	T	Sox1.mouse_HMG_2	5	1	+	4.347703492723343	-2.561051286591876	TTGGATGGCATTCTT
chr15	98746408	98746409	chr15:98746409:C:G	rs2137683	C	G	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr15	98771857	98771858	chr15:98771858:A:G	rs8033169	A	G	G	Sox1.mouse_HMG_2	9	1	+	4.485995047418201	-2.422759731897019	GTTACTGACATTCAA
chr15	98863649	98863650	chr15:98863650:G:C	rs2684780	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr15	98917632	98917633	chr15:98917633:A:G	rs10048024	A	G	G	Sox1.mouse_HMG_2	13	1	-	6.70149765215304	3.5751451961819853	CTGAATAATATTCTA
chr15	99109624	99109625	chr15:99109625:G:C	rs1004979916	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr15	99134544	99134545	chr15:99134545:G:A	rs3134588	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr15	99285108	99285109	chr15:99285109:A:G	rs35405100	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr15	99407387	99407388	chr15:99407388:A:C	rs12593500	A	C	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr15	99494678	99494679	chr15:99494679:A:G	rs111929109	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	99495517	99495518	chr15:99495518:G:C	rs78807901	G	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	99504271	99504272	chr15:99504272:G:T	chr15:99504272:G:T	G	T	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr15	99706628	99706629	chr15:99706629:T:G	rs325409	T	G	T	Sox1.mouse_HMG_2	4	1	-	6.487503870301263	4.105442802434341	ATGAATGTCATTTTC
chr15	99712686	99712687	chr15:99712687:A:G	rs34851361	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr15	99751958	99751959	chr15:99751959:T:C	rs55842367	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr15	99756042	99756043	chr15:99756043:G:A	rs115531836	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr15	99759427	99759428	chr15:99759428:T:C	rs6598271	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	99853567	99853568	chr15:99853568:G:A	rs34768750	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr15	99957669	99957670	chr15:99957670:C:T	rs112840771	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr15	99992661	99992662	chr15:99992662:C:T	rs2573606	C	T	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	100061532	100061533	chr15:100061533:T:C	rs58179995	T	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr15	100103214	100103215	chr15:100103215:T:C	rs36094016	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr15	100221805	100221806	chr15:100221806:T:G	rs12591128	T	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr15	100249348	100249349	chr15:100249349:G:A	rs376437880	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr15	100249356	100249357	chr15:100249357:G:A	rs8023275	G	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr15	100266057	100266058	chr15:100266058:T:C	rs113961275	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.187087675703833	4.312475332981097	CTGAGTAAAATTCAT
chr15	100291486	100291487	chr15:100291487:T:C	chr15:100291487:T:C	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr15	100310116	100310117	chr15:100310117:G:C	rs894500	G	C	C	Sox1.mouse_HMG_2	14	1	-	4.2880379865795355	4.009582212514533	GTGAATTTCTGTCAC
chr15	100425422	100425423	chr15:100425423:T:C	rs2585218	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	100486651	100486652	chr15:100486652:C:T	rs2587771	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr15	100529959	100529960	chr15:100529960:C:G	rs57737119	C	G	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr15	100707923	100707924	chr15:100707924:A:C	rs72763007	A	C	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr15	100968368	100968369	chr15:100968369:G:T	rs75612594	G	T	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr15	101125201	101125202	chr15:101125202:T:G	rs7164471	T	G	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr15	101185985	101185986	chr15:101185986:G:A	rs76967748	G	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr15	101262751	101262752	chr15:101262752:C:T	rs9806366	C	T	C	Sox1.mouse_HMG_2	8	1	+	2.9274716523903623	-2.716955037991626	CTGAATAGCGTTCCT
chr15	101438242	101438243	chr15:101438243:T:A	rs11632780	T	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr15	101455450	101455451	chr15:101455451:G:A	rs112458594	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr15	101466119	101466120	chr15:101466120:G:T	rs12903048	G	T	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr15	101466147	101466148	chr15:101466148:G:A	rs8026048	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr15	101689253	101689254	chr15:101689254:T:C	rs7168282	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr16	44534	44535	chr16:44535:G:A	rs216583	G	A	N	Sox1.mouse_HMG_2	14	1	-	8.46091732895212	9.335529671674854	CTGAGTAGCATTCAC
chr16	56776	56777	chr16:56777:G:C	rs216597	G	C	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr16	330546	330547	chr16:330547:C:A	rs60907769	C	A	c	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr16	483464	483465	chr16:483465:C:G	rs7191283	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr16	629273	629274	chr16:629274:G:A	rs35915772	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	916361	916362	chr16:916362:C:T	rs575495922	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr16	959821	959822	chr16:959822:C:T	rs59802517	C	T	.	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr16	1388971	1388972	chr16:1388972:C:T	rs8048774	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr16	1683684	1683685	chr16:1683685:A:G	rs77163532	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr16	1870577	1870578	chr16:1870578:A:C	rs371533	A	C	A	Sox1.mouse_HMG_2	7	1	+	1.8305153321059835	1.4338306114379138	GTGGATAACATCCAC
chr16	1884422	1884423	chr16:1884423:G:T	chr16:1884423:G:T	G	T	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	2064642	2064643	chr16:2064643:T:G	rs17654678	T	G	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	2407498	2407499	chr16:2407499:G:T	rs66496842	G	T	-	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	2835677	2835678	chr16:2835678:A:G	rs75106776	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	2835692	2835693	chr16:2835693:A:G	rs76693058	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	2904079	2904080	chr16:2904080:G:A	rs115040321	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	2914281	2914282	chr16:2914282:G:A	rs2074365	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	2928442	2928443	chr16:2928443:A:C	rs111624331	A	C	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr16	2957944	2957945	chr16:2957945:G:A	rs569388161	G	A	g	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr16	3155393	3155394	chr16:3155394:G:A	rs2194335	G	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr16	3177883	3177884	chr16:3177884:G:A	rs7205923	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	3192614	3192615	chr16:3192615:T:C	rs427135	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr16	3202628	3202629	chr16:3202629:G:T	rs9936364	G	T	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr16	3553275	3553276	chr16:3553276:C:G	rs56106426	C	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr16	3937951	3937952	chr16:3937952:T:C	rs6500563	T	C	C	Sox1.mouse_HMG_2	10	1	+	4.056468667846634	-2.791472910433647	TGGACTATCATTCTG
chr16	3959457	3959458	chr16:3959458:G:A	rs74003474	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	4043046	4043047	chr16:4043047:T:C	rs2601801	T	C	C	Sox1.mouse_HMG_2	10	1	+	3.2197497432478333	-3.628191835032448	CTGACTAACATGCTG
chr16	4043062	4043063	chr16:4043063:C:G	rs2601800	C	G	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr16	4241422	4241423	chr16:4241423:C:T	rs80076814	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr16	4461330	4461331	chr16:4461331:C:T	rs111749218	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr16	4534404	4534405	chr16:4534405:C:T	rs4786519	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	4548253	4548254	chr16:4548254:T:G	rs75780751	T	G	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	4618564	4618565	chr16:4618565:A:G	rs841198	A	G	a	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	4626728	4626729	chr16:4626729:C:G	rs4332748	C	G	c	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr16	4661901	4661902	chr16:4661902:T:A	rs28427339	T	A	A	Sox1.mouse_HMG_2	13	1	-	3.6707101172438534	0.47634656408556103	AAGAGTTCCATTCAG
chr16	4677026	4677027	chr16:4677027:T:G	rs149252364	T	G	T	Sox1.mouse_HMG_2	5	1	+	4.867314378485628	-2.041440400829592	CTGATTTGCAGTCAC
chr16	4677046	4677047	chr16:4677047:G:T	rs147535575	G	T	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr16	4747224	4747225	chr16:4747225:T:C	rs759989	T	C	T	Sox1.mouse_HMG_2	5	1	+	12.121573452935241	5.2128186736200215	CTGAATTGCATTCTT
chr16	4770007	4770008	chr16:4770008:A:G	rs77598609	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr16	4873089	4873090	chr16:4873090:G:A	rs2251666	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr16	4913439	4913440	chr16:4913440:T:A	rs141191494	T	A	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	4913456	4913457	chr16:4913457:T:C	rs12444913	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr16	5034108	5034109	chr16:5034109:C:G	rs186565453	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	5055363	5055364	chr16:5055364:C:T	rs741167	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	5090762	5090763	chr16:5090763:C:T	rs9673906	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr16	5218665	5218666	chr16:5218666:C:T	rs56208627	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	5406800	5406801	chr16:5406801:A:G	rs72777540	A	G	C	Sox1.mouse_HMG_2	9	1	+	11.127623813126455	4.218869033811233	ATGAATACAATTCAG
chr16	5439225	5439226	chr16:5439226:T:C	rs60616467	T	C	T	Sox1.mouse_HMG_2	0	1	-	3.153972021727041	2.1497357890918405	ATGACTCACATTCCA
chr16	5609386	5609387	chr16:5609387:T:G	rs34769568	T	G	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	5640535	5640536	chr16:5640536:A:G	rs11643185	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr16	5706496	5706497	chr16:5706497:G:A	rs66549605	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr16	5779438	5779439	chr16:5779439:C:T	rs7198618	C	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	5945386	5945387	chr16:5945387:T:G	rs4786794	T	G	G	Sox1.mouse_HMG_2	6	1	-	5.496604223085354	1.1441892203969863	CAGAATACCATTCCT
chr16	6298294	6298295	chr16:6298295:C:A	rs4441272	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr16	6510524	6510525	chr16:6510525:T:C	rs17442866	T	C	T	Sox1.mouse_HMG_2	11	1	+	2.9511371909364015	-3.957617588378819	ATTATTATCATTCAT
chr16	6714145	6714146	chr16:6714146:C:G	rs718971	C	G	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	6777880	6777881	chr16:6777881:G:A	rs112345403	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	6829215	6829216	chr16:6829216:A:G	rs12934725	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr16	6832103	6832104	chr16:6832104:T:C	rs4786942	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	6841363	6841364	chr16:6841364:G:C	rs7500622	G	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr16	6841824	6841825	chr16:6841825:G:A	rs7501416	G	A	A	Sox1.mouse_HMG_2	0	1	-	9.07463013833805	8.808686944568615	CTGAAGAACATTCAC
chr16	6940515	6940516	chr16:6940516:A:G	rs9936119	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr16	6947566	6947567	chr16:6947567:T:C	rs72774217	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr16	7052425	7052426	chr16:7052426:G:T	rs12920426	G	T	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr16	7101331	7101332	chr16:7101332:C:T	rs1382478	C	T	T	Sox1.mouse_HMG_2	2	1	-	8.084255647004003	3.4388531139877863	ATGAATAGCATTTTC
chr16	7141147	7141148	chr16:7141148:C:G	rs1531563	C	G	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	7497965	7497966	chr16:7497966:A:T	rs2058294	A	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	7666174	7666175	chr16:7666175:A:G	rs9931894	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.200142757704348	0.25402506993169915	CTGAAGCCCATTCAT
chr16	7938147	7938148	chr16:7938148:G:A	rs9652645	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr16	8098873	8098874	chr16:8098874:C:A	rs72636257	C	A	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	8098902	8098903	chr16:8098903:A:G	rs12923757	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	8107324	8107325	chr16:8107325:G:C	rs11645778	G	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	8146188	8146189	chr16:8146189:C:T	rs7205385	C	T	T	Sox1.mouse_HMG_2	2	1	-	7.196644965335688	2.5512424323194693	CTGAATAACAGCCAT
chr16	8237762	8237763	chr16:8237763:A:T	rs17145489	A	T	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr16	8249850	8249851	chr16:8249851:G:A	rs13330666	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr16	8356079	8356080	chr16:8356080:A:G	rs775837803	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr16	8519600	8519601	chr16:8519601:C:G	rs4787245	C	G	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	8555020	8555021	chr16:8555021:T:G	rs66631970	T	G	t	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	8644178	8644179	chr16:8644179:T:C	rs74618611	T	C	T	Sox1.mouse_HMG_2	11	1	+	2.3571372361303196	-4.5516175431849	CTGCCTCTCATTCAT
chr16	8932241	8932242	chr16:8932242:C:T	rs77188284	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	9068356	9068357	chr16:9068357:C:T	rs11075191	C	T	t	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr16	9079259	9079260	chr16:9079260:C:T	rs867660750	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr16	9079285	9079286	chr16:9079286:C:T	rs9673524	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	9092851	9092852	chr16:9092852:C:G	chr16:9092852:C:G	C	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	9092851	9092852	chr16:9092852:C:T	rs148736862	C	T	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	9165752	9165753	chr16:9165753:G:T	rs3743831	G	T	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	9445060	9445061	chr16:9445061:C:T	rs114836687	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.9519279714296527	4.826540314152389	CTGATTCTCATTCAC
chr16	9484396	9484397	chr16:9484397:A:G	rs4780443	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.947489025526108	-1.9004525527541725	TTGAATACCATTGTG
chr16	9598015	9598016	chr16:9598016:G:A	rs4265804	G	A	A	Sox1.mouse_HMG_2	12	1	-	3.957606913655739	-0.7149801900125169	ATGGATACCATTCGA
chr16	9598035	9598036	chr16:9598036:G:A	rs16965779	G	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr16	9635347	9635348	chr16:9635348:T:G	rs115892046	T	G	T	Sox1.mouse_HMG_2	11	1	+	3.3802600845561073	-3.528494694759113	GTCTATTACATTCAT
chr16	9653045	9653046	chr16:9653046:T:A	rs75142036	T	A	T	Sox1.mouse_HMG_2	7	1	+	3.9905182121533294	4.848147386528506	CTGATTTTCATTCTG
chr16	9712893	9712894	chr16:9712894:T:C	rs28372311	T	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	9967232	9967233	chr16:9967233:T:C	rs766575950	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr16	10068080	10068081	chr16:10068081:G:A	rs28465345	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	10085380	10085381	chr16:10085381:C:T	rs76990086	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	10122076	10122077	chr16:10122077:G:A	rs55905124	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	10122078	10122079	chr16:10122079:C:A	rs55941845	C	A	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr16	10263223	10263224	chr16:10263224:G:C	rs10852285	G	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	10306428	10306429	chr16:10306429:T:C	rs6497888	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr16	10310662	10310663	chr16:10310663:A:G	rs1097922	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr16	10376695	10376696	chr16:10376696:T:C	rs12918978	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	10573378	10573379	chr16:10573379:G:C	rs12921306	G	C	G	Sox1.mouse_HMG_2	14	1	+	1.8552409711351072	2.1336967452001097	ATGAACAGCATCCAG
chr16	10586569	10586570	chr16:10586570:T:C	chr16:10586570:T:C	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	10618254	10618255	chr16:10618255:T:G	rs57907153	T	G	T	Sox1.mouse_HMG_2	1	1	+	3.661386327737115	-1.2870771588346948	TTGAATCACAGTTAG
chr16	10625073	10625074	chr16:10625074:C:T	rs12325084	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	10676683	10676684	chr16:10676684:G:A	rs1079016	G	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	10869068	10869069	chr16:10869069:T:C	rs73499447	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr16	10918956	10918957	chr16:10918957:C:A	rs138473034	C	A	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr16	10984757	10984758	chr16:10984758:G:A	rs7202408	G	A	g	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	11005847	11005848	chr16:11005848:G:A	rs565306743	G	A	G	Sox1.mouse_HMG_2	7	1	+	6.669868854554544	7.37092367409562	CTGACTCGCAGTCAT
chr16	11071159	11071160	chr16:11071160:T:C	rs11860603	T	C	C	Sox1.mouse_HMG_2	13	1	+	4.812157216824707	1.6858047608536522	TTGACTGTCAGTCTG
chr16	11080156	11080157	chr16:11080157:G:A	rs9652600	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	11329362	11329363	chr16:11329363:T:C	rs114488454	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr16	11340984	11340985	chr16:11340985:C:G	rs7201452	C	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr16	11442572	11442573	chr16:11442573:A:C	rs8044309	A	C	A	Sox1.mouse_HMG_2	3	1	+	3.1167585018065074	-3.791996277508712	ACGACTGCCATTTAC
chr16	11489827	11489828	chr16:11489828:C:T	rs11862887	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr16	11554898	11554899	chr16:11554899:C:T	rs11646946	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	11569896	11569897	chr16:11569897:G:C	rs112356538	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr16	11637584	11637585	chr16:11637585:G:A	rs72781065	G	A	g	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	11950666	11950667	chr16:11950667:A:G	chr16:11950667:A:G	A	G	a	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr16	11978266	11978267	chr16:11978267:G:A	rs442332	G	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr16	11986684	11986685	chr16:11986685:A:C	rs434455	A	C	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	11998717	11998718	chr16:11998718:C:T	rs11639821	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	12139330	12139331	chr16:12139331:G:A	rs34147612	G	A	G	Sox1.mouse_HMG_2	10	1	+	3.1807307862882563	-0.9146132762669271	ATTACTGACAGTCAC
chr16	12184544	12184545	chr16:12184545:A:G	rs73521818	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.4397932348558196	-1.2041990726374143	CTGGATGCCATTTAT
chr16	12214688	12214689	chr16:12214689:C:A	rs34896667	C	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	12314345	12314346	chr16:12314346:A:G	rs752493801	A	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr16	12502653	12502654	chr16:12502654:T:C	rs9941261	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.915688782293752	-2.9930659970214686	TTGAATTTCATCCTC
chr16	12526878	12526879	chr16:12526879:C:A	rs2269445	C	A	c	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr16	12567087	12567088	chr16:12567088:G:A	rs2865574	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	12610622	12610623	chr16:12610623:C:A	rs2217271	C	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr16	12650373	12650374	chr16:12650374:A:G	rs10468253	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr16	12749747	12749748	chr16:12749748:T:C	rs2865632	T	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr16	12796902	12796903	chr16:12796903:T:C	rs9941068	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr16	12901189	12901190	chr16:12901190:T:C	rs116024037	T	C	T	Sox1.mouse_HMG_2	13	1	-	2.287995363912116	-2.6581223238605323	CTAAATGGCTTTCAC
chr16	12901221	12901222	chr16:12901222:G:A	rs73512679	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr16	12971669	12971670	chr16:12971670:G:A	rs11075176	G	A	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr16	13120814	13120815	chr16:13120815:G:A	rs12444019	G	A	A	Sox1.mouse_HMG_2	2	1	+	4.603399426679308	-0.042003106336908014	CTGTATGACAGTCAG
chr16	13316595	13316596	chr16:13316596:T:A	rs176074	T	A	A	Sox1.mouse_HMG_2	0	1	+	3.4160700097221763	4.350889409209967	TTCAATAACTTTCAC
chr16	13391150	13391151	chr16:13391151:A:G	rs4781457	A	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr16	13508874	13508875	chr16:13508875:T:C	rs118018992	T	C	T	Sox1.mouse_HMG_2	14	1	+	4.126962993670041	3.252350650947305	CTAAATTCCAATCAT
chr16	13628203	13628204	chr16:13628204:G:T	rs74009048	G	T	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr16	13883841	13883842	chr16:13883842:C:T	rs8049031	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	13923945	13923946	chr16:13923946:G:T	chr16:13923946:G:T	G	T	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr16	13945790	13945791	chr16:13945791:C:G	rs3136211	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	13983803	13983804	chr16:13983804:T:A	rs9936499	T	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	14003220	14003221	chr16:14003221:G:A	rs535656626	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr16	14013608	14013609	chr16:14013609:G:A	rs116176151	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	14533272	14533273	chr16:14533273:G:C	rs142309238	G	C	-	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	14581043	14581044	chr16:14581044:A:T	rs188966364	A	T	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	14628309	14628310	chr16:14628310:A:G	chr16:14628310:A:G	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.201810100503389	-2.706944678811832	TTGACTGGCATTTTT
chr16	14672307	14672308	chr16:14672308:C:G	rs72546340	C	G	.	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	15028954	15028955	chr16:15028955:C:G	rs112323280	C	G	.	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	15257446	15257447	chr16:15257447:T:A	rs62037001	T	A	.	Sox1.mouse_HMG_2	14	1	+	2.2602954680391076	0.9425861033564215	CTGAAATACACTCAT
chr16	15485079	15485080	chr16:15485080:C:T	rs72774892	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	15590900	15590901	chr16:15590901:G:A	rs1041812712	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr16	15590909	15590910	chr16:15590910:A:G	chr16:15590910:A:G	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr16	15745176	15745177	chr16:15745177:G:A	rs1050113	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr16	15865898	15865899	chr16:15865899:G:A	rs3743515	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	15865918	15865919	chr16:15865919:G:T	rs11129	G	T	G	Sox1.mouse_HMG_2	8	1	-	4.1884081469598025	-0.6610886685522964	AGGAATTGCAATCAT
chr16	15944126	15944127	chr16:15944127:G:A	rs6498589	G	A	-	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	15988270	15988271	chr16:15988271:G:C	rs246220	G	C	C	Sox1.mouse_HMG_2	8	1	-	1.9160541721700461	-3.802480490365661	ATGAAAAGCACTCAG
chr16	16022698	16022699	chr16:16022699:G:T	rs17264736	G	T	g	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	16028256	16028257	chr16:16028257:G:T	rs79629927	G	T	g	Sox1.mouse_HMG_2	0	1	-	3.3719898230733554	4.040866028791713	CAGAATTACAATCAG
chr16	16032906	16032907	chr16:16032907:T:C	rs924138	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr16	16067567	16067568	chr16:16067568:G:A	rs9932506	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr16	16127861	16127862	chr16:16127862:C:T	rs1330629644	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr16	16127865	16127866	chr16:16127866:G:A	rs55802107	G	A	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	16550020	16550021	chr16:16550021:A:C	rs2547768	A	C	A	Sox1.mouse_HMG_2	9	1	+	2.540793081938254	-4.367961697376966	ATGAATTCCACTGAT
chr16	16638488	16638489	chr16:16638489:C:T	rs2606527	C	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	16793232	16793233	chr16:16793233:C:T	rs12932564	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	16893889	16893890	chr16:16893890:T:C	rs11075318	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	16916799	16916800	chr16:16916800:T:C	rs4782056	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr16	16916833	16916834	chr16:16916834:A:G	rs4782055	A	G	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	17013468	17013469	chr16:17013469:T:A	rs7204769	T	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr16	17162932	17162933	chr16:17162933:A:C	rs56226631	A	C	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr16	17212803	17212804	chr16:17212804:C:T	rs2311139	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	17275545	17275546	chr16:17275546:G:A	rs567592672	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr16	17289700	17289701	chr16:17289701:C:T	rs62033198	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	17325694	17325695	chr16:17325695:T:A	rs116974291	T	A	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr16	17453523	17453524	chr16:17453524:A:G	rs8047118	A	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	17476965	17476966	chr16:17476966:C:G	rs142727316	C	G	C	Sox1.mouse_HMG_2	12	1	+	5.556518691313597	-1.3439299591527676	GTAAATAACATTCCT
chr16	17476979	17476980	chr16:17476980:G:C	rs557556454	G	C	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr16	17798628	17798629	chr16:17798629:C:T	rs11860700	C	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	17798636	17798637	chr16:17798637:T:G	rs118162261	T	G	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	18595296	18595297	chr16:18595297:A:C	rs6498784	A	C	.	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	18720620	18720621	chr16:18720621:T:C	rs187749760	T	C	T	Sox1.mouse_HMG_2	11	1	+	3.863285994292369	-3.0454687850228503	CTCAATAAAAGTCAT
chr16	18760129	18760130	chr16:18760130:C:A	rs2641922	C	A	C	Sox1.mouse_HMG_2	7	1	+	6.10070006400674	6.49738478467481	TTGACTTCGATTCAG
chr16	18789315	18789316	chr16:18789316:G:C	rs73541341	G	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	18800656	18800657	chr16:18800657:A:G	rs145692191	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr16	19297411	19297412	chr16:19297412:G:A	rs179211	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr16	19397256	19397257	chr16:19397257:A:G	rs11644356	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr16	19522443	19522444	chr16:19522444:G:A	rs1194735147	G	A	G	Sox1.mouse_HMG_2	14	1	+	3.9591820440508307	3.794540796155883	TTCAATTCAATTCAG
chr16	19696873	19696874	chr16:19696874:A:G	rs7187976	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	19717802	19717803	chr16:19717803:G:A	rs538351576	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.850270206788605	3.389325753081498	CGGAATTCCAGTCTC
chr16	20163410	20163411	chr16:20163411:A:G	rs4436787	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	20255752	20255753	chr16:20255753:G:T	rs4476181	G	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr16	20353265	20353266	chr16:20353266:A:G	rs4293393	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	20364344	20364345	chr16:20364345:A:G	rs4369676	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr16	20843986	20843987	chr16:20843987:A:G	rs9929443	A	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr16	20902615	20902616	chr16:20902616:G:A	rs80091695	G	A	g	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr16	21568534	21568535	chr16:21568535:C:A	rs546645421	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr16	21647176	21647177	chr16:21647177:G:A	rs147257312	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	22616552	22616553	chr16:22616553:A:C	rs377201275	A	C	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr16	22942691	22942692	chr16:22942692:C:T	rs117113089	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr16	23026988	23026989	chr16:23026989:C:T	rs144785686	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr16	23074786	23074787	chr16:23074787:G:A	rs4967966	G	A	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr16	23224901	23224902	chr16:23224902:T:C	rs9933286	T	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr16	23990938	23990939	chr16:23990939:A:G	rs11074596	A	G	a	Sox1.mouse_HMG_2	9	1	+	7.922990315708933	1.0142355363937121	ATGAACTGCATTCAG
chr16	23996614	23996615	chr16:23996615:T:C	rs28896538	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr16	24114416	24114417	chr16:24114417:T:C	rs28603301	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	24120002	24120003	chr16:24120003:T:G	rs2283541	T	G	T	Sox1.mouse_HMG_2	9	1	-	7.868823440686008	0.9600686613707873	CTGAATGGCACTCAT
chr16	24242855	24242856	chr16:24242856:C:T	rs75896652	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	24254851	24254852	chr16:24254852:A:C	rs2239341	A	C	A	Sox1.mouse_HMG_2	13	1	+	10.894885362677103	4.574169353547754	CTAAATAACATTCAA
chr16	24472530	24472531	chr16:24472531:T:C	rs11640043	T	C	C	Sox1.mouse_HMG_2	13	1	+	3.490401842696139	0.3640493867250844	GTGAATGCCACTCTG
chr16	24517040	24517041	chr16:24517041:G:A	rs141902914	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr16	24525474	24525475	chr16:24525475:T:C	rs80035789	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.327453890418166	-2.520487687862116	TTGAATACCATTTCC
chr16	24538495	24538496	chr16:24538496:A:G	rs28361950	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr16	24669117	24669118	chr16:24669118:A:G	rs16973907	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	24701050	24701051	chr16:24701051:C:T	rs112839201	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	24701078	24701079	chr16:24701079:G:A	rs117033824	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	24718449	24718450	chr16:24718450:C:T	rs766181	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr16	24737881	24737882	chr16:24737882:G:A	rs200536	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	24748641	24748642	chr16:24748642:T:C	rs200527	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr16	24843181	24843182	chr16:24843182:G:T	rs57056564	G	T	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr16	25033817	25033818	chr16:25033818:A:G	rs4787667	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	25445225	25445226	chr16:25445226:T:C	rs1034599	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	25466392	25466393	chr16:25466393:T:C	rs9935555	T	C	t	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	25721518	25721519	chr16:25721519:C:T	rs62034431	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr16	25796546	25796547	chr16:25796547:C:T	rs11861610	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr16	25948480	25948481	chr16:25948481:G:C	rs12448631	G	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr16	26084446	26084447	chr16:26084447:A:G	rs67365409	A	G	A	Sox1.mouse_HMG_2	10	1	-	6.801455487028796	-0.04648609125148401	GAGACTTGCATTCAG
chr16	26220873	26220874	chr16:26220874:G:A	rs60505201	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	26281962	26281963	chr16:26281963:A:G	rs1115083	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr16	26505811	26505812	chr16:26505812:A:G	rs79090407	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr16	26505819	26505820	chr16:26505820:G:A	rs35991710	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr16	26506021	26506022	chr16:26506022:A:C	rs8056180	A	C	C	Sox1.mouse_HMG_2	6	1	+	2.3572294085406327	-1.9951855941477354	CTGAATACCTTTCCC
chr16	26943340	26943341	chr16:26943341:C:T	rs7202007	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr16	26943373	26943374	chr16:26943374:G:A	rs7202481	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	26950569	26950570	chr16:26950570:T:C	rs74578222	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	27026760	27026761	chr16:27026761:G:T	rs10852311	G	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr16	27097814	27097815	chr16:27097815:A:C	rs17638585	A	C	A	Sox1.mouse_HMG_2	10	1	-	5.2128186736200215	2.4602211578949236	CTGAATTGCTTTCTT
chr16	27198963	27198964	chr16:27198964:A:T	rs60848152	A	T	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	27267305	27267306	chr16:27267306:G:A	rs72782383	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr16	27267314	27267315	chr16:27267315:C:T	rs116942558	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr16	27288010	27288011	chr16:27288011:G:A	rs116949284	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	27691231	27691232	chr16:27691232:G:A	chr16:27691232:G:A	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr16	27759491	27759492	chr16:27759492:C:T	rs6498034	C	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	27950858	27950859	chr16:27950859:T:C	rs11074887	T	C	C	Sox1.mouse_HMG_2	10	1	+	6.688918055294053	-0.15902352298622874	AGGAATTGCATTCTG
chr16	27960779	27960780	chr16:27960780:T:A	rs886219	T	A	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr16	27978951	27978952	chr16:27978952:C:A	rs6498054	C	A	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr16	28068477	28068478	chr16:28068478:A:C	rs205425	A	C	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr16	28558683	28558684	chr16:28558684:C:T	rs4788076	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	28615741	28615742	chr16:28615742:C:T	rs28676837	C	T	.	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr16	29120688	29120689	chr16:29120689:A:T	rs11644273	A	T	.	Sox1.mouse_HMG_2	5	1	-	3.1964523983773305	-3.712302380937889	GTGACTTACATACTT
chr16	29121140	29121141	chr16:29121141:A:G	rs1630274	A	G	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	29137243	29137244	chr16:29137244:T:C	rs1642026	T	C	.	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr16	29236762	29236763	chr16:29236763:G:T	rs153208	G	T	N	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	29277382	29277383	chr16:29277383:T:C	rs55680018	T	C	.	Sox1.mouse_HMG_2	7	1	-	9.188764747039029	8.487709927497955	TTAAATGACATTCAA
chr16	29299868	29299869	chr16:29299869:T:C	rs62038975	T	C	.	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr16	29791429	29791430	chr16:29791430:G:A	rs143671319	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr16	30633961	30633962	chr16:30633962:G:A	rs28728333	G	A	-	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	31080571	31080572	chr16:31080572:A:G	rs117506794	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr16	33034822	33034823	chr16:33034823:A:G	rs62048331	A	G	a	Sox1.mouse_HMG_2	6	1	+	3.889773295909106	2.4495958740404666	GTGAATAAAATCCAC
chr16	34096196	34096197	chr16:34096197:T:C	rs79702793	T	C	.	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	34119926	34119927	chr16:34119927:T:A	rs556010029	T	A	.	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	34161068	34161069	chr16:34161069:G:A	rs8058630	G	A	.	Sox1.mouse_HMG_2	1	1	-	4.9389457227409865	9.582938030234219	CCGACTTTCATTCTT
chr16	34572133	34572134	chr16:34572134:T:G	rs1193692328	T	G	.	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	34572397	34572398	chr16:34572398:A:G	rs1487021157	A	G	.	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	34572548	34572549	chr16:34572549:T:G	rs1351625427	T	G	.	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	34573206	34573207	chr16:34573207:G:C	rs1399383459	G	C	.	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	34574221	34574222	chr16:34574222:T:C	rs1222614021	T	C	.	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr16	34574226	34574227	chr16:34574227:G:A	rs1347717593	G	A	.	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr16	34575957	34575958	chr16:34575958:T:G	rs1462601712	T	G	.	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	34582297	34582298	chr16:34582298:T:C	rs1422875868	T	C	.	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	34582911	34582912	chr16:34582912:C:T	rs1377971971	C	T	.	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	34585650	34585651	chr16:34585651:C:A	rs894353151	C	A	.	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	34585799	34585800	chr16:34585800:C:T	rs1287379349	C	T	.	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	34585837	34585838	chr16:34585838:T:C	chr16:34585838:T:C	T	C	.	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	34586369	34586370	chr16:34586370:C:G	rs1284827609	C	G	.	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	34586720	34586721	chr16:34586721:C:T	rs962340126	C	T	.	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	34587985	34587986	chr16:34587986:C:T	rs1265343813	C	T	.	Sox1.mouse_HMG_2	3	1	-	3.0529921970354486	9.96174697635067	TTCGATTCCATTCAT
chr16	34588770	34588771	chr16:34588771:T:A	rs1162521805	T	A	.	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	34588774	34588775	chr16:34588775:A:G	rs1402247106	A	G	.	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr16	34588838	34588839	chr16:34588839:A:C	rs879062942	A	C	.	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	34589540	34589541	chr16:34589541:T:A	rs1452378687	T	A	.	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr16	34589573	34589574	chr16:34589574:G:A	rs1281613880	G	A	.	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr16	34591538	34591539	chr16:34591539:T:C	rs1370721430	T	C	.	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	34592800	34592801	chr16:34592801:A:T	chr16:34592801:A:T	A	T	.	Sox1.mouse_HMG_2	9	1	+	3.933536214040907	-2.975218565274312	TTGGATTCCATTCTA
chr16	34594251	34594252	chr16:34594252:T:A	rs904323822	T	A	.	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	34594482	34594483	chr16:34594483:T:C	rs1013915865	T	C	.	Sox1.mouse_HMG_2	13	1	+	5.44967405850969	2.323321602538636	TTCAATTCCATTCTA
chr16	34594942	34594943	chr16:34594943:T:G	rs1366265040	T	G	.	Sox1.mouse_HMG_2	3	1	+	3.0529921970354486	3.0529921970354486	TTCTATTCCATTCAT
chr16	46381616	46381617	chr16:46381617:G:C	rs28810408	G	C	.	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	46386192	46386193	chr16:46386193:A:T	rs8056165	A	T	.	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	46387358	46387359	chr16:46387359:A:G	rs28837417	A	G	.	Sox1.mouse_HMG_2	10	1	+	3.145082711557928	7.2404267741131125	ATCAATGGCAATCAT
chr16	46387380	46387381	chr16:46387381:C:T	rs4511562	C	T	.	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr16	46390362	46390363	chr16:46390363:C:A	rs28839249	C	A	.	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	46393105	46393106	chr16:46393106:C:G	chr16:46393106:C:G	C	G	.	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	46394365	46394366	chr16:46394366:T:G	rs12449007	T	G	.	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	46400480	46400481	chr16:46400481:T:C	rs6598763	T	C	.	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	46400512	46400513	chr16:46400513:G:A	rs9928963	G	A	.	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	46400962	46400963	chr16:46400963:A:G	rs4967561	A	G	.	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr16	46400991	46400992	chr16:46400992:A:T	rs8050567	A	T	.	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	46401094	46401095	chr16:46401095:A:T	rs6598768	A	T	.	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	46401662	46401663	chr16:46401663:A:G	rs1455471125	A	G	.	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr16	46829945	46829946	chr16:46829946:G:A	rs140064545	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	46829946	46829947	chr16:46829947:T:G	rs986367746	T	G	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	48276252	48276253	chr16:48276253:T:C	rs574374603	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr16	48462456	48462457	chr16:48462457:G:A	rs76174447	G	A	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	48462478	48462479	chr16:48462479:C:T	rs78137297	C	T	.	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr16	48481424	48481425	chr16:48481425:A:T	rs9926683	A	T	a	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr16	48999339	48999340	chr16:48999340:T:G	rs1420590	T	G	G	Sox1.mouse_HMG_2	11	1	+	4.353228070176705	-2.555526709138515	GAGACTTCCAGTCAG
chr16	49005165	49005166	chr16:49005166:T:C	rs1558760	T	C	T	Sox1.mouse_HMG_2	11	1	+	5.713058476865048	-1.1956963024501723	CTGACCAGCATTCAG
chr16	49331209	49331210	chr16:49331210:T:A	rs27920	T	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	49431545	49431546	chr16:49431546:C:G	rs376473465	C	G	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	49742496	49742497	chr16:49742497:A:G	rs7193830	A	G	A	Sox1.mouse_HMG_2	7	1	+	6.712453054266306	6.01139823472523	ATGAAGAACAGTCAG
chr16	50014410	50014411	chr16:50014411:C:T	rs12103257	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr16	50147207	50147208	chr16:50147208:T:C	rs1043720637	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr16	50147228	50147229	chr16:50147229:A:C	rs140883305	A	C	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	50277400	50277401	chr16:50277401:T:G	rs80177630	T	G	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	50317532	50317533	chr16:50317533:T:C	rs4785407	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	50416513	50416514	chr16:50416514:T:A	rs8045296	T	A	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr16	50426202	50426203	chr16:50426203:C:T	rs1872692	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	50436851	50436852	chr16:50436852:C:A	rs74017388	C	A	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	50584315	50584316	chr16:50584316:G:A	rs145617064	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr16	50831994	50831995	chr16:50831995:G:A	rs116816485	G	A	G	Sox1.mouse_HMG_2	8	1	-	2.2747617755804974	-3.369664914801489	GAGAATTGCCTTCAG
chr16	50843393	50843394	chr16:50843394:A:G	rs7198635	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr16	50863185	50863186	chr16:50863186:C:T	rs192791036	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr16	51079634	51079635	chr16:51079635:T:G	chr16:51079635:T:G	T	G	T	Sox1.mouse_HMG_2	9	1	-	3.192430979625953	-3.7163237996892655	GTAAATGCCACTCAT
chr16	51378325	51378326	chr16:51378326:C:T	rs11075555	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	51896119	51896120	chr16:51896120:T:C	rs80331211	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr16	52142118	52142119	chr16:52142119:G:A	rs149128670	G	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr16	52255214	52255215	chr16:52255215:A:G	rs12930844	A	G	G	Sox1.mouse_HMG_2	10	1	-	3.146535374143469	-3.701406204136811	CAGAAGTACATTCAA
chr16	52257091	52257092	chr16:52257092:G:A	rs11649692	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	52272001	52272002	chr16:52272002:A:C	rs1362378	A	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	52655600	52655601	chr16:52655601:A:G	rs9925027	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	53219486	53219487	chr16:53219487:G:A	rs76917846	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr16	53256911	53256912	chr16:53256912:C:G	rs1362440	C	G	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr16	53726619	53726620	chr16:53726620:G:A	rs7202836	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	53837990	53837991	chr16:53837991:A:C	rs17818920	A	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	53925957	53925958	chr16:53925958:G:C	rs8051580	G	C	-	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr16	53971879	53971880	chr16:53971880:A:G	rs79684629	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.448848574048838	-1.459906205266382	ATGAAATGCAGTCAC
chr16	54029220	54029221	chr16:54029221:T:C	rs75928240	T	C	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	54096257	54096258	chr16:54096258:G:T	rs16953047	G	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr16	54166696	54166697	chr16:54166697:G:A	rs114283412	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr16	54266402	54266403	chr16:54266403:G:A	rs144582661	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr16	54455880	54455881	chr16:54455881:C:A	rs2388639	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr16	54455897	54455898	chr16:54455898:T:G	rs2388640	T	G	G	Sox1.mouse_HMG_2	9	1	-	3.7345741443293416	-3.1741806349858788	CAGAATTACATTCCA
chr16	54503966	54503967	chr16:54503967:C:T	rs147233517	C	T	C	Sox1.mouse_HMG_2	12	1	+	7.4237551336208485	2.7511680299525927	ATGAATAACATACTT
chr16	54543113	54543114	chr16:54543114:C:A	rs28706003	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	54796062	54796063	chr16:54796063:C:A	rs4591143	C	A	C	Sox1.mouse_HMG_2	10	1	-	6.08969633682486	8.842293852549956	TTGAACTACAGTCAT
chr16	55030299	55030300	chr16:55030300:C:G	rs13338979	C	G	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	55152068	55152069	chr16:55152069:A:T	rs75631051	A	T	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	55222381	55222382	chr16:55222382:A:G	rs7191847	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr16	55645771	55645772	chr16:55645772:G:T	rs72817528	G	T	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr16	55747521	55747522	chr16:55747522:T:C	rs9937399	T	C	t	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr16	55781609	55781610	chr16:55781610:T:G	rs28409947	T	G	T	Sox1.mouse_HMG_2	1	1	+	9.858723235221918	4.910259748650108	GTCAATACCATTCAC
chr16	55855729	55855730	chr16:55855730:G:T	rs539867159	G	T	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	55946068	55946069	chr16:55946069:C:T	rs6499810	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr16	56015024	56015025	chr16:56015025:C:T	rs8052802	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr16	56212257	56212258	chr16:56212258:C:T	rs11647381	C	T	C	Sox1.mouse_HMG_2	12	1	+	7.846437144754642	3.173850041086386	TTGAATGCCATACAT
chr16	56212279	56212280	chr16:56212280:G:T	rs11647097	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr16	56354980	56354981	chr16:56354981:C:T	rs116862304	C	T	c	Sox1.mouse_HMG_2	8	1	+	4.821058262498168	-0.8233684278838171	ACGAATAACATCCAG
chr16	56460331	56460332	chr16:56460332:A:G	rs185266415	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr16	56542642	56542643	chr16:56542643:T:C	rs417053	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr16	56639230	56639231	chr16:56639231:A:G	rs11076160	A	G	.	Sox1.mouse_HMG_2	4	1	+	4.225133322825948	-2.596279446334121	CTGTATAAAATTCAC
chr16	56639235	56639236	chr16:56639236:A:G	rs11076161	A	G	.	Sox1.mouse_HMG_2	9	1	+	4.225133322825948	-2.683621456489272	CTGTATAAAATTCAC
chr16	56686348	56686349	chr16:56686349:G:A	rs72784751	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.095277803927971	5.099514036563172	GAGAAAAACATTCAC
chr16	56686365	56686366	chr16:56686366:G:A	rs7195394	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr16	56939136	56939137	chr16:56939137:T:C	rs2270835	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	57107753	57107754	chr16:57107754:A:C	rs4783972	A	C	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	57317012	57317013	chr16:57317013:T:A	rs1273586	T	A	t	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	57539141	57539142	chr16:57539142:C:T	rs56815477	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	57610423	57610424	chr16:57610424:T:C	rs16958270	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.08969633682486	1.4457040293316261	TTGTATTACAGTCAT
chr16	57679772	57679773	chr16:57679773:A:C	rs9925879	A	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	57707433	57707434	chr16:57707434:C:T	rs12933056	C	T	C	Sox1.mouse_HMG_2	8	1	-	4.119691149875626	4.988728996899236	GTGACTACGAGTCAG
chr16	57736653	57736654	chr16:57736654:G:A	rs575720070	G	A	g	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	57736653	57736654	chr16:57736654:G:T	chr16:57736654:G:T	G	T	g	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	57822843	57822844	chr16:57822844:G:A	rs11865054	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr16	57880900	57880901	chr16:57880901:A:G	rs11642564	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr16	58128498	58128499	chr16:58128499:A:G	rs112501441	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	58269694	58269695	chr16:58269695:A:G	rs4784030	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	58630285	58630286	chr16:58630286:C:T	rs567692298	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr16	58687192	58687193	chr16:58687193:A:G	rs9745345	A	G	g	Sox1.mouse_HMG_2	1	1	-	2.8158761542579285	-1.8281161532353054	CTGAATACTACTCAG
chr16	58733825	58733826	chr16:58733826:C:T	rs74383391	C	T	c	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	58969106	58969107	chr16:58969107:G:A	rs7194392	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	59000202	59000203	chr16:59000203:C:T	rs7202257	C	T	c	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr16	59170393	59170394	chr16:59170394:A:G	rs9941209	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr16	59708081	59708082	chr16:59708082:A:C	rs77102983	A	C	A	Sox1.mouse_HMG_2	6	1	-	3.1927755464370704	2.593603559309827	TGGGATTGCATTCAT
chr16	60581693	60581694	chr16:60581694:C:T	rs1347531	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	60612198	60612199	chr16:60612199:A:G	rs2043592	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr16	60727823	60727824	chr16:60727824:T:G	rs16962511	T	G	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr16	60815269	60815270	chr16:60815270:A:T	rs62045415	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr16	62200105	62200106	chr16:62200106:G:A	rs11645328	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr16	62596982	62596983	chr16:62596983:A:G	rs1040586241	A	G	A	Sox1.mouse_HMG_2	11	1	-	3.801616824388653	-3.1071379549265665	TAGAATTCCCTTCAT
chr16	62642855	62642856	chr16:62642856:C:T	rs288614	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	62854032	62854033	chr16:62854033:T:C	rs12935272	T	C	C	Sox1.mouse_HMG_2	6	1	-	3.850680443512349	2.41050302164371	ATGAATATGAGTCTG
chr16	62922805	62922806	chr16:62922806:G:A	rs17353691	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr16	63081522	63081523	chr16:63081523:A:G	rs139910571	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr16	64236591	64236592	chr16:64236592:C:T	rs76584084	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	64287641	64287642	chr16:64287642:G:C	rs62039798	G	C	G	Sox1.mouse_HMG_2	12	1	-	5.607821928459344	-1.2926267220070198	AAGACTTTCATTCTT
chr16	64853450	64853451	chr16:64853451:A:G	rs1423992	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr16	64983773	64983774	chr16:64983774:T:C	rs974602387	T	C	T	Sox1.mouse_HMG_2	0	1	-	5.703125749573623	4.69888951693842	ATAAATATCATTCCT
chr16	64983788	64983789	chr16:64983789:A:G	rs35207	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr16	65106961	65106962	chr16:65106962:T:C	rs970118705	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr16	65124979	65124980	chr16:65124980:A:G	rs7196224	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.038546990402132	-1.6054453170911023	TTGAAGTTCATTCGT
chr16	65404682	65404683	chr16:65404683:G:C	rs138892820	G	C	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr16	65500410	65500411	chr16:65500411:G:C	rs9923227	G	C	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr16	65572135	65572136	chr16:65572136:A:T	rs4583239	A	T	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	65576257	65576258	chr16:65576258:G:C	rs12444408	G	C	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr16	65733949	65733950	chr16:65733950:A:G	rs12919399	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr16	65994840	65994841	chr16:65994841:G:A	rs9924023	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr16	66058654	66058655	chr16:66058655:G:A	rs1121926	G	A	A	Sox1.mouse_HMG_2	14	1	+	2.6322562132763254	2.4676149653813777	ATCAAGGACATTCAG
chr16	66422990	66422991	chr16:66422991:C:T	rs11643524	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr16	66508181	66508182	chr16:66508182:G:A	rs74451221	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr16	66517365	66517366	chr16:66517366:G:A	rs537380484	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.798390186248816	-0.8470123467673997	TCGACTTTCATTCTC
chr16	66517370	66517371	chr16:66517371:T:C	rs117304331	T	C	T	Sox1.mouse_HMG_2	7	1	+	3.798390186248816	4.259334639955923	TCGACTTTCATTCTC
chr16	66517390	66517391	chr16:66517391:C:T	rs75641132	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	66517405	66517406	chr16:66517406:G:A	rs112975899	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr16	66620058	66620059	chr16:66620059:A:C	rs355945	A	C	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	66620061	66620062	chr16:66620062:T:G	rs75901413	T	G	T	Sox1.mouse_HMG_2	13	1	-	4.4243735418301	-1.8963424672992466	AAGAACACCATTCAG
chr16	66639464	66639465	chr16:66639465:G:A	rs165209	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr16	66726072	66726073	chr16:66726073:C:T	rs2305310	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	66832779	66832780	chr16:66832780:C:T	rs62057887	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr16	66947498	66947499	chr16:66947499:G:A	rs140616618	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr16	67346646	67346647	chr16:67346647:T:C	rs7184253	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr16	68147225	68147226	chr16:68147226:T:G	rs74327209	T	G	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr16	68539121	68539122	chr16:68539122:C:G	chr16:68539122:C:G	C	G	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr16	68548957	68548958	chr16:68548958:A:G	rs12921494	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	68796607	68796608	chr16:68796608:A:T	rs17715799	A	T	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr16	68805398	68805399	chr16:68805399:T:C	rs10431924	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr16	68929956	68929957	chr16:68929957:T:G	rs188630328	T	G	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	68974133	68974134	chr16:68974134:C:T	rs3743678	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.7858776059532477	-0.8595249270629697	CCGACTTTCATTCTG
chr16	69101145	69101146	chr16:69101146:C:A	rs8047014	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr16	69277065	69277066	chr16:69277066:C:T	rs374779565	C	T	C	Sox1.mouse_HMG_2	0	1	+	1.8027975463360981	1.5368543525666656	CTGAACTCCATACAT
chr16	69480111	69480112	chr16:69480112:A:G	rs72797197	A	G	g	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr16	69651110	69651111	chr16:69651111:A:G	rs10500553	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr16	69835253	69835254	chr16:69835254:T:G	rs374161094	T	G	T	Sox1.mouse_HMG_2	9	1	-	6.233455044653682	-0.6752997346615394	ATAAATAGCAGTCTT
chr16	69895233	69895234	chr16:69895234:G:A	rs7200005	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr16	70011844	70011845	chr16:70011845:A:C	rs929843	A	C	.	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	70011845	70011846	chr16:70011846:G:A	rs11648231	G	A	.	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr16	70200201	70200202	chr16:70200202:C:T	rs187870462	C	T	-	Sox1.mouse_HMG_2	10	1	+	7.0591806645376955	13.907122242817975	ATGACTTCCACTCAT
chr16	70551910	70551911	chr16:70551911:G:C	rs777179213	G	C	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	70591300	70591301	chr16:70591301:G:A	rs55638004	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr16	70645627	70645628	chr16:70645628:T:A	rs12924304	T	A	T	Sox1.mouse_HMG_2	6	1	+	4.8183992734340535	5.659404708175449	TTGAATTCCTGTCAC
chr16	70647587	70647588	chr16:70647588:C:T	rs11865804	C	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr16	70720615	70720616	chr16:70720616:G:A	rs973791435	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	71116379	71116380	chr16:71116380:G:C	rs11075867	G	C	.	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	71320302	71320303	chr16:71320303:C:G	rs62054995	C	G	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	71320339	71320340	chr16:71320340:C:G	rs11862530	C	G	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr16	71693667	71693668	chr16:71693668:A:T	rs9936903	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr16	71758304	71758305	chr16:71758305:T:C	rs7185997	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr16	71795425	71795426	chr16:71795426:T:C	rs34998650	T	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr16	72112015	72112016	chr16:72112016:G:A	rs74027820	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr16	72150666	72150667	chr16:72150667:C:T	rs35370634	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	72190290	72190291	chr16:72190291:C:T	rs149049011	C	T	C	Sox1.mouse_HMG_2	9	1	-	3.971020591090762	10.879775370405982	AGGAATTTCGTTCAT
chr16	72665538	72665539	chr16:72665539:T:G	rs777683990	T	G	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr16	72988597	72988598	chr16:72988598:A:C	rs11862771	A	C	C	Sox1.mouse_HMG_2	5	1	-	7.353354216129088	0.44459943681386677	TTGAATTCCAATCAG
chr16	72988604	72988605	chr16:72988605:T:C	rs4541098	T	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	73102894	73102895	chr16:73102895:T:C	rs62052382	T	C	T	Sox1.mouse_HMG_2	0	1	-	6.964760555521414	5.960524322886213	ATGGCTACCATTCAC
chr16	73123805	73123806	chr16:73123806:T:C	rs56010482	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.803292856790115	3.7990566241549137	ATGAGTCCCATTCAG
chr16	73144703	73144704	chr16:73144704:A:G	rs77172764	A	G	A	Sox1.mouse_HMG_2	14	1	+	9.629918011541902	9.794559259436848	TTGAATAATATTCAA
chr16	73351641	73351642	chr16:73351642:C:T	rs116574245	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	73384088	73384089	chr16:73384089:C:A	rs34948512	C	A	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr16	73433362	73433363	chr16:73433363:C:A	rs34339652	C	A	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr16	73463504	73463505	chr16:73463505:T:C	rs1345871	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr16	73568675	73568676	chr16:73568676:C:T	rs137871707	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr16	73735238	73735239	chr16:73735239:T:C	rs62042428	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	73735270	73735271	chr16:73735271:G:T	rs138941615	G	T	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr16	73788237	73788238	chr16:73788238:C:T	rs78225403	C	T	C	Sox1.mouse_HMG_2	4	1	+	3.1351277046261044	-1.3042239966670444	CTGCCTTCCATTCTT
chr16	73797616	73797617	chr16:73797617:C:T	rs565955	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr16	73849341	73849342	chr16:73849342:C:T	rs61248130	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr16	74025171	74025172	chr16:74025172:G:C	rs2716587	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	74037307	74037308	chr16:74037308:G:A	rs2716554	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	74060598	74060599	chr16:74060599:G:C	rs9928370	G	C	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	74285812	74285813	chr16:74285813:C:T	rs72791046	C	T	.	Sox1.mouse_HMG_2	8	1	+	3.271255537534135	-2.3731711528478496	GAGAATTTCGTTCAT
chr16	74285816	74285817	chr16:74285817:C:A	rs969208160	C	A	.	Sox1.mouse_HMG_2	12	1	+	3.271255537534135	-3.6291931129322283	GAGAATTTCGTTCAT
chr16	74581291	74581292	chr16:74581292:A:G	rs8055803	A	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	74674148	74674149	chr16:74674149:T:A	rs75981157	T	A	T	Sox1.mouse_HMG_2	5	1	+	12.696635693907204	5.787880914591983	TTGAATAGCATTCTT
chr16	74709477	74709478	chr16:74709478:T:A	chr16:74709478:T:A	T	A	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	74709507	74709508	chr16:74709508:T:C	rs73614628	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	74827674	74827675	chr16:74827675:A:G	rs72794763	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.304365078156729	-1.604389701158492	GTCAATAACATTTAG
chr16	74867929	74867930	chr16:74867930:A:C	rs8045860	A	C	A	Sox1.mouse_HMG_2	9	1	+	1.8617455457577696	-5.047009233557451	CTGAGTAGCATTCCG
chr16	75006757	75006758	chr16:75006758:G:T	rs112359306	G	T	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr16	75027003	75027004	chr16:75027004:T:C	rs75562502	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	75130242	75130243	chr16:75130243:C:T	rs7194875	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	75312889	75312890	chr16:75312890:C:G	rs1862705	C	G	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr16	75359453	75359454	chr16:75359454:T:G	rs17696696	T	G	G	Sox1.mouse_HMG_2	6	1	-	1.781251086047265	-2.5711639166411007	CTTAATACCCTTCAC
chr16	75401898	75401899	chr16:75401899:C:T	rs12051159	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr16	75574209	75574210	chr16:75574210:G:C	rs60393074	G	C	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	75651410	75651411	chr16:75651411:G:A	rs118104716	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr16	75862729	75862730	chr16:75862730:T:G	rs62051619	T	G	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	75966281	75966282	chr16:75966282:C:T	rs12928535	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr16	75966313	75966314	chr16:75966314:T:C	rs12448826	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	76059403	76059404	chr16:76059404:T:C	rs2432615	T	C	c	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	76176472	76176473	chr16:76176473:T:C	rs75269534	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	76224197	76224198	chr16:76224198:A:T	rs994703004	A	T	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	76345455	76345456	chr16:76345456:T:C	rs62049729	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr16	76347719	76347720	chr16:76347720:C:A	rs8049902	C	A	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	76377578	76377579	chr16:76377579:T:C	rs17766975	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	76409033	76409034	chr16:76409034:A:T	rs5021011	A	T	a	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	76574218	76574219	chr16:76574219:C:T	rs7186989	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr16	76574262	76574263	chr16:76574263:C:T	rs4887868	C	T	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr16	76783794	76783795	chr16:76783795:G:A	rs56902504	G	A	A	Sox1.mouse_HMG_2	8	1	-	3.415341158095071	-2.229085532286915	CAGAATTTCAGTCTG
chr16	76805693	76805694	chr16:76805694:A:C	rs75979951	A	C	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	76927277	76927278	chr16:76927278:C:T	rs903990	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr16	76977031	76977032	chr16:76977032:T:C	rs35127222	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr16	77074238	77074239	chr16:77074239:G:A	rs73633216	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	77170165	77170166	chr16:77170166:G:A	rs7499356	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	77192154	77192155	chr16:77192155:A:G	rs12716823	A	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	77299584	77299585	chr16:77299585:C:T	rs149382955	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	77424879	77424880	chr16:77424880:C:T	rs78868769	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr16	77424939	77424940	chr16:77424940:C:G	rs12446009	C	G	C	Sox1.mouse_HMG_2	13	1	-	3.297004177650063	1.9224058562933641	TTGAATGACCTTCGT
chr16	77509220	77509221	chr16:77509221:A:G	rs62043861	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	77509254	77509255	chr16:77509255:G:C	rs17714932	G	C	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr16	77510507	77510508	chr16:77510508:G:A	rs16945803	G	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr16	77539564	77539565	chr16:77539565:A:G	rs1841799	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr16	77544417	77544418	chr16:77544418:T:A	rs176091	T	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	77571547	77571548	chr16:77571548:G:A	rs9926916	G	A	g	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr16	77714635	77714636	chr16:77714636:G:A	rs35764726	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr16	77714654	77714655	chr16:77714655:C:A	rs79236761	C	A	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	77791550	77791551	chr16:77791551:A:C	rs2966072	A	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	77800332	77800333	chr16:77800333:A:G	rs76468629	A	G	A	Sox1.mouse_HMG_2	14	1	-	4.245590531293449	3.370978188570713	TGAAATAACAGTCAT
chr16	77840869	77840870	chr16:77840870:T:G	rs181870682	T	G	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	78094416	78094417	chr16:78094417:A:G	rs1073111	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	78291292	78291293	chr16:78291293:C:T	rs530800523	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	78300642	78300643	chr16:78300643:A:G	rs78308730	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	78322423	78322424	chr16:78322424:G:A	rs12932345	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr16	78385465	78385466	chr16:78385466:T:C	rs147063058	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	78421327	78421328	chr16:78421328:A:G	rs6564543	A	G	a	Sox1.mouse_HMG_2	13	1	+	2.771985617927679	-2.174132069844969	ATGACTGCCAGCCAC
chr16	78421328	78421329	chr16:78421329:C:T	rs6564544	C	T	T	Sox1.mouse_HMG_2	14	1	+	2.771985617927679	3.646597960650415	ATGACTGCCAGCCAC
chr16	78496459	78496460	chr16:78496460:A:C	rs2667586	A	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr16	78551776	78551777	chr16:78551777:C:G	rs17639961	C	G	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr16	78624480	78624481	chr16:78624481:A:G	rs16948211	A	G	A	Sox1.mouse_HMG_2	5	1	+	4.259732293935152	4.259732293935152	AAGAAAACCATTCAA
chr16	78624495	78624496	chr16:78624496:T:G	rs2548861	T	G	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr16	78683691	78683692	chr16:78683692:A:G	rs7193282	A	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr16	78685311	78685312	chr16:78685312:A:G	rs74032724	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr16	78878172	78878173	chr16:78878173:C:A	rs2656628	C	A	c	Sox1.mouse_HMG_2	11	1	-	8.095119544731972	15.003874324047192	CTGAATAGCATGCAG
chr16	79041088	79041089	chr16:79041089:A:G	rs16949364	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.1045261483694935	-1.743415429910788	ATGAATTACATGTAT
chr16	79060336	79060337	chr16:79060337:G:C	rs11646307	G	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	79061047	79061048	chr16:79061048:C:T	rs9972825	C	T	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr16	79077399	79077400	chr16:79077400:T:C	rs12925972	T	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr16	79133411	79133412	chr16:79133412:T:G	rs12716869	T	G	T	Sox1.mouse_HMG_2	1	1	+	3.8836426162238538	-1.0648208703479556	ATGACACACATTCAT
chr16	79210827	79210828	chr16:79210828:G:C	rs427883	G	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	79265144	79265145	chr16:79265145:G:A	rs270433	G	A	G	Sox1.mouse_HMG_2	7	1	-	9.23453513914972	8.773590685442613	ATGACTTCCATTTAT
chr16	79525325	79525326	chr16:79525326:C:T	rs76158434	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.028760628788445	-1.6156660615935414	GTGAATTCCTTTCTG
chr16	79592335	79592336	chr16:79592336:C:T	rs149989861	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	79592338	79592339	chr16:79592339:C:G	rs113194286	C	G	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	79656470	79656471	chr16:79656471:T:A	rs11150185	T	A	A	Sox1.mouse_HMG_2	9	1	-	4.715478687289552	-2.1932760920256675	CTGACCTTCATTCAG
chr16	79800427	79800428	chr16:79800428:A:C	chr16:79800428:A:C	A	C	A	Sox1.mouse_HMG_2	1	1	-	4.531954351568785	-0.4165091350030238	GTGAGTTGCAGTCAC
chr16	79839407	79839408	chr16:79839408:G:T	rs11644568	G	T	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	79849270	79849271	chr16:79849271:C:T	rs568912296	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	79849281	79849282	chr16:79849282:C:T	rs142842718	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	79936519	79936520	chr16:79936520:G:A	rs4573937	G	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr16	79936531	79936532	chr16:79936532:A:G	rs4405564	A	G	A	Sox1.mouse_HMG_2	4	1	+	7.766415960874834	0.9450031917147599	ATGAATTTCATACAG
chr16	80012871	80012872	chr16:80012872:G:A	rs4493049	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.463755020149617	-0.1806716702323684	GTGAATGACATTTGT
chr16	80024143	80024144	chr16:80024144:C:G	rs4889067	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr16	80035492	80035493	chr16:80035493:G:A	rs79926099	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr16	80035630	80035631	chr16:80035631:C:G	rs4470161	C	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	80065341	80065342	chr16:80065342:T:G	rs4889090	T	G	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr16	80299644	80299645	chr16:80299645:C:G	rs1094134	C	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	80299692	80299693	chr16:80299693:G:A	rs11646502	G	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr16	80307455	80307456	chr16:80307456:C:T	rs72816456	C	T	C	Sox1.mouse_HMG_2	7	1	+	5.6248072850429605	5.163862831335854	ATCAATGCCATTTAT
chr16	80411336	80411337	chr16:80411337:G:A	rs66836864	G	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	80411383	80411384	chr16:80411384:G:A	rs146941926	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr16	80567220	80567221	chr16:80567221:G:T	rs966670	G	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr16	80628026	80628027	chr16:80628027:T:C	rs12933466	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr16	80629148	80629149	chr16:80629149:C:T	rs2167672	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	80703264	80703265	chr16:80703265:T:C	rs4061957	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr16	80712267	80712268	chr16:80712268:T:C	rs62051679	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	80818117	80818118	chr16:80818118:T:C	rs76444333	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	80851199	80851200	chr16:80851200:A:T	rs2580267	A	T	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	80901417	80901418	chr16:80901418:A:G	rs9925811	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr16	80971835	80971836	chr16:80971836:T:A	rs13332890	T	A	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr16	81136387	81136388	chr16:81136388:C:G	rs12934839	C	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr16	81311340	81311341	chr16:81311341:T:C	rs12924233	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	81394829	81394830	chr16:81394830:C:A	rs12935010	C	A	C	Sox1.mouse_HMG_2	12	1	+	11.16749501012251	4.267046359656147	CTGAATTAAATTCAT
chr16	81398087	81398088	chr16:81398088:A:C	rs2927313	A	C	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr16	81601257	81601258	chr16:81601258:G:C	rs9925501	G	C	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr16	81670255	81670256	chr16:81670256:G:A	rs11150398	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	81716497	81716498	chr16:81716498:A:G	rs73602446	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.307164667895297	0.3610469801226483	TTGACTTACGTTCAG
chr16	81786440	81786441	chr16:81786441:C:G	rs536930702	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	81818483	81818484	chr16:81818484:G:C	rs79159225	G	C	G	Sox1.mouse_HMG_2	2	1	+	11.491411537764158	6.098794602917722	GTGAATGCCATTCTT
chr16	81829065	81829066	chr16:81829066:A:G	rs8057305	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	81841953	81841954	chr16:81841954:C:T	rs13339274	C	T	C	Sox1.mouse_HMG_2	0	1	+	3.755497336111741	3.4895541423423095	CAGAAAACCATTCAG
chr16	81907554	81907555	chr16:81907555:A:G	rs41301803	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr16	81909583	81909584	chr16:81909584:C:T	rs28481521	C	T	T	Sox1.mouse_HMG_2	8	1	+	3.958946012709844	-1.6854806776721438	CTGAATAACTTTTAA
chr16	81938364	81938365	chr16:81938365:G:A	rs4888191	G	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr16	82085598	82085599	chr16:82085599:T:G	rs723013	T	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	82171652	82171653	chr16:82171653:A:G	rs138817823	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	82262406	82262407	chr16:82262407:C:T	rs6565010	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	82461970	82461971	chr16:82461971:G:C	rs72828336	G	C	G	Sox1.mouse_HMG_2	12	1	-	5.115086979387749	-1.7853616710786149	ATAAACATCATTCAT
chr16	82579918	82579919	chr16:82579919:A:G	rs7195156	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	82654462	82654463	chr16:82654463:T:G	rs150085830	T	G	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr16	82660469	82660470	chr16:82660470:G:T	rs895127026	G	T	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr16	82785611	82785612	chr16:82785612:A:G	rs77891184	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr16	83116147	83116148	chr16:83116148:C:G	rs4077666	C	G	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	83116150	83116151	chr16:83116151:A:G	rs57128975	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr16	83145626	83145627	chr16:83145627:T:C	rs6565135	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	83146608	83146609	chr16:83146609:A:C	rs8053417	A	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr16	83308475	83308476	chr16:83308476:T:C	rs6420380	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.490440044833542	-1.4183147344816789	GAGAATTACATTTAC
chr16	83346523	83346524	chr16:83346524:G:A	rs113334191	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr16	83458514	83458515	chr16:83458515:A:G	rs62040122	A	G	a	Sox1.mouse_HMG_2	13	1	-	4.868355613528698	1.7420031575576438	ATGAACTCCATTCTA
chr16	83458528	83458529	chr16:83458529:C:G	rs71402079	C	G	c	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	83465044	83465045	chr16:83465045:T:C	rs8050667	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	83513121	83513122	chr16:83513122:A:G	rs77607480	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr16	83576748	83576749	chr16:83576749:G:C	rs6563938	G	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr16	83727668	83727669	chr16:83727669:A:G	rs8062187	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr16	83770328	83770329	chr16:83770329:A:C	rs7194149	A	C	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	83945995	83945996	chr16:83945996:G:T	rs253136	G	T	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr16	83946010	83946011	chr16:83946011:A:G	rs74690508	A	G	A	Sox1.mouse_HMG_2	11	1	-	4.127474486386329	-2.781280292928891	GTAAAATACATTCAT
chr16	83946031	83946032	chr16:83946032:G:A	rs9927959	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr16	83983256	83983257	chr16:83983257:T:C	rs112478588	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	84043860	84043861	chr16:84043861:A:G	rs17787138	A	G	G	Sox1.mouse_HMG_2	7	1	+	2.9904604089761744	2.2894055894350984	CCGGATGACATTCAC
chr16	84065651	84065652	chr16:84065652:A:C	rs80053280	A	C	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr16	84219422	84219423	chr16:84219423:C:A	rs39555	C	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr16	84246276	84246277	chr16:84246277:C:T	rs4782600	C	T	C	Sox1.mouse_HMG_2	14	1	+	2.3979113004635586	3.2725236431862945	CTGACCTGCAGTCAC
chr16	84280380	84280381	chr16:84280381:C:T	rs244868	C	T	c	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr16	84362667	84362668	chr16:84362668:C:T	rs11640169	C	T	C	Sox1.mouse_HMG_2	11	1	-	4.438758178784362	4.438758178784362	CTGAATGACAGGCAA
chr16	84406596	84406597	chr16:84406597:T:C	rs1262943584	T	C	.	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr16	84411737	84411738	chr16:84411738:G:A	rs35926752	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	84511713	84511714	chr16:84511714:C:A	rs13331808	C	A	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr16	84511755	84511756	chr16:84511756:G:A	rs111670909	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr16	84538362	84538363	chr16:84538363:C:A	rs378138	C	A	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	84610418	84610419	chr16:84610419:T:G	rs35241774	T	G	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr16	84703394	84703395	chr16:84703395:C:G	rs56163001	C	G	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	84740188	84740189	chr16:84740189:G:A	rs12149794	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr16	84926697	84926698	chr16:84926698:C:T	rs1874628	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	85042137	85042138	chr16:85042138:C:T	rs1392526	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.429186883729365	-2.215239806652621	TGTAATAACATTCAA
chr16	85172645	85172646	chr16:85172646:C:T	rs8062375	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	85312651	85312652	chr16:85312652:G:A	rs117164822	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr16	85429994	85429995	chr16:85429995:G:A	rs28604313	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	85452682	85452683	chr16:85452683:C:G	rs4782704	C	G	C	Sox1.mouse_HMG_2	10	1	-	4.353248368280233	0.2579043057250496	CTGAATTTCAGTGAG
chr16	85535880	85535881	chr16:85535881:T:C	rs114147303	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr16	85614362	85614363	chr16:85614363:A:T	rs1012139501	A	T	A	Sox1.mouse_HMG_2	13	1	+	3.8002065988656697	0.6058430457073775	TTAAATTCCCTTCAT
chr16	85721680	85721681	chr16:85721681:A:T	rs381170	A	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr16	85985480	85985481	chr16:85985481:T:A	rs13330176	T	A	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	85987089	85987090	chr16:85987090:T:C	rs41428948	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.0215415740900635	0.07542388631741492	TTGAGTCCCATTCAT
chr16	86045749	86045750	chr16:86045750:C:T	rs80156872	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr16	86045778	86045779	chr16:86045779:A:G	rs66692701	A	G	G	Sox1.mouse_HMG_2	9	1	+	3.1372228625858947	-3.7715319167293258	AGGAATGACACTCAG
chr16	86045799	86045800	chr16:86045800:T:G	rs12597437	T	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr16	86200147	86200148	chr16:86200148:C:A	rs276966	C	A	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr16	86308766	86308767	chr16:86308767:C:T	rs2665313	C	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr16	86308801	86308802	chr16:86308802:T:A	rs11646415	T	A	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr16	86338217	86338218	chr16:86338218:T:C	rs2581300	T	C	t	Sox1.mouse_HMG_2	9	1	-	2.4700967997037706	-4.438657979611449	GTGACTAGCATTGTC
chr16	86338227	86338228	chr16:86338228:G:A	rs12926258	G	A	g	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	86375427	86375428	chr16:86375428:C:T	rs138135606	C	T	C	Sox1.mouse_HMG_2	4	1	+	5.17642314099666	0.7370714397035081	CTGACTTCCATACAG
chr16	86471264	86471265	chr16:86471265:G:C	rs12930792	G	C	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr16	86599028	86599029	chr16:86599029:T:A	rs437080	T	A	A	Sox1.mouse_HMG_2	13	1	+	8.429869913446481	11.624233466604775	CTGACTTTCATTCTG
chr16	86599031	86599032	chr16:86599032:C:T	rs443812	C	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr16	86611266	86611267	chr16:86611267:A:G	rs429312	A	G	A	Sox1.mouse_HMG_2	0	1	+	9.076058432496671	8.07182219986147	ATGGATTGCATTCAT
chr16	86653365	86653366	chr16:86653366:T:C	rs10514617	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr16	86670789	86670790	chr16:86670790:A:C	rs11866010	A	C	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr16	86746924	86746925	chr16:86746925:C:T	rs192724388	C	T	-	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr16	86811547	86811548	chr16:86811548:C:G	rs8057744	C	G	C	Sox1.mouse_HMG_2	4	1	+	2.592020705037265	-1.847330996255886	TTGACTAGCAATCTC
chr16	86856014	86856015	chr16:86856015:G:A	rs12448444	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr16	86862308	86862309	chr16:86862309:G:C	rs11640239	G	C	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr16	86934840	86934841	chr16:86934841:G:A	rs4843483	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr16	86935147	86935148	chr16:86935148:G:A	rs74663663	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr16	86998191	86998192	chr16:86998192:T:C	rs7184988	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	87009684	87009685	chr16:87009685:T:C	rs12445522	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr16	87015283	87015284	chr16:87015284:T:C	rs77634451	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr16	87054924	87054925	chr16:87054925:T:A	rs3909501	T	A	T	Sox1.mouse_HMG_2	14	1	+	3.560601572620335	2.2428922079376488	CGGCATGACATTCAT
chr16	87105111	87105112	chr16:87105112:T:C	rs73246136	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.104526148369492	-1.8042286309457292	ATGAAATACATTTAT
chr16	87189144	87189145	chr16:87189145:T:C	rs78777540	T	C	t	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr16	87189180	87189181	chr16:87189181:C:G	rs113361904	C	G	c	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	87223808	87223809	chr16:87223809:T:C	rs143277241	T	C	T	Sox1.mouse_HMG_2	14	1	-	4.3457074466601116	4.510348694555059	TTGACTTTCACTCAA
chr16	87394747	87394748	chr16:87394748:A:T	rs148617165	A	T	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr16	87456091	87456092	chr16:87456092:T:C	rs4843613	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr16	87465349	87465350	chr16:87465350:G:A	rs77941606	G	A	g	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	87728219	87728220	chr16:87728220:T:C	rs79073849	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.588858604420626	-0.35725908335202267	CTGAGTTGCAGTCAG
chr16	87816063	87816064	chr16:87816064:T:C	rs4843706	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr16	87979694	87979695	chr16:87979695:T:G	rs1409315499	T	G	t	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr16	88057648	88057649	chr16:88057649:A:G	rs72818554	A	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	88073626	88073627	chr16:88073627:G:A	rs72818572	G	A	G	Sox1.mouse_HMG_2	0	1	+	5.708216821631104	6.712453054266306	GTGAAGAACAGTCAG
chr16	88073651	88073652	chr16:88073652:C:G	rs4072778	C	G	c	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr16	88392804	88392805	chr16:88392805:C:G	rs12325268	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr16	88457980	88457981	chr16:88457981:A:C	rs4782302	A	C	A	Sox1.mouse_HMG_2	13	1	-	7.830454048178907	6.078699913564551	ATGAATATTATTCTT
chr16	88525357	88525358	chr16:88525358:G:A	rs12924252	G	A	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	88561629	88561630	chr16:88561630:C:T	rs76964266	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr16	88561630	88561631	chr16:88561631:A:C	rs76534765	A	C	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr16	88767249	88767250	chr16:88767250:T:C	rs3848236	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.3440775285223396	-4.503864049757941	TGGAATTCCATCCAG
chr16	88854685	88854686	chr16:88854686:G:A	rs115259713	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr16	88855991	88855992	chr16:88855992:C:T	rs113424850	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr16	88968840	88968841	chr16:88968841:T:C	rs4129789	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	89080453	89080454	chr16:89080454:C:G	rs9929697	C	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr16	89086690	89086691	chr16:89086691:T:C	rs4782335	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr16	89135632	89135633	chr16:89135633:C:T	rs12934720	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr16	89232158	89232159	chr16:89232159:G:A	rs12934482	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr16	89248514	89248515	chr16:89248515:C:T	rs118105791	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr16	89248551	89248552	chr16:89248552:T:C	rs28584716	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr16	89700214	89700215	chr16:89700215:G:C	rs146425044	G	C	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr16	89700229	89700230	chr16:89700230:C:G	rs117963037	C	G	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr16	89700257	89700258	chr16:89700258:C:A	rs117568059	C	A	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr16	89719411	89719412	chr16:89719412:T:C	rs56112321	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr16	89819070	89819071	chr16:89819071:G:A	rs144075458	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr16	89984471	89984472	chr16:89984472:A:C	rs4785759	A	C	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr16	90070725	90070726	chr16:90070726:T:C	rs4636910	T	C	.	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr16	90077443	90077444	chr16:90077444:C:T	chr16:90077444:C:T	C	T	.	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr16	90077447	90077448	chr16:90077448:G:C	rs1022518917	G	C	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr17	135254	135255	chr17:135255:C:T	rs1404611068	C	T	.	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr17	226152	226153	chr17:226153:A:G	rs75945161	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr17	232589	232590	chr17:232590:C:T	rs34314694	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr17	232590	232591	chr17:232591:G:A	rs61214440	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr17	318078	318079	chr17:318079:C:G	rs73284693	C	G	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr17	395417	395418	chr17:395418:G:A	rs77028725	G	A	A	Sox1.mouse_HMG_2	2	1	+	2.5270010525556117	-2.118401480460605	CTGACTAGCATTGTG
chr17	395419	395420	chr17:395420:C:T	rs75828842	C	T	T	Sox1.mouse_HMG_2	4	1	+	2.5270010525556117	-1.912350648737539	CTGACTAGCATTGTG
chr17	522875	522876	chr17:522876:T:C	rs8072809	T	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr17	522892	522893	chr17:522893:T:C	rs28733292	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr17	551991	551992	chr17:551992:C:T	rs2304949	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	676535	676536	chr17:676536:C:T	rs370861	C	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr17	736363	736364	chr17:736364:T:C	rs2750002	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr17	813583	813584	chr17:813584:G:A	rs1741274	G	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr17	928426	928427	chr17:928427:C:T	rs2360111	C	T	c	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr17	934556	934557	chr17:934557:T:A	rs6598837	T	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr17	1099605	1099606	chr17:1099606:T:C	rs12450029	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr17	1391600	1391601	chr17:1391601:A:C	rs2131431	A	C	A	Sox1.mouse_HMG_2	0	1	+	6.6686965854972655	5.999820379778907	ATGACTAGCATTAAC
chr17	1393644	1393645	chr17:1393645:G:A	rs4286156	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr17	1589310	1589311	chr17:1589311:G:A	rs111735177	G	A	G	Sox1.mouse_HMG_2	12	1	-	1.9747615951129722	-2.6978255085552827	CTGATAAACATTCAG
chr17	1669492	1669493	chr17:1669493:A:G	rs765453072	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	1714710	1714711	chr17:1714711:T:A	rs369181983	T	A	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr17	1949536	1949537	chr17:1949537:C:T	rs11651877	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr17	1961454	1961455	chr17:1961455:C:T	rs9646401	C	T	T	Sox1.mouse_HMG_2	0	1	+	7.020739907083481	6.7547967133140485	CTGATTGGCATTCAC
chr17	1961455	1961456	chr17:1961456:T:C	rs985441760	T	C	T	Sox1.mouse_HMG_2	1	1	+	7.020739907083481	2.3767475995902476	CTGATTGGCATTCAC
chr17	2010882	2010883	chr17:2010883:G:A	rs4790862	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr17	2082548	2082549	chr17:2082549:C:T	rs8069947	C	T	c	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr17	2148435	2148436	chr17:2148436:G:T	rs12452074	G	T	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr17	2189860	2189861	chr17:2189861:C:A	rs140751072	C	A	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	2214650	2214651	chr17:2214651:A:G	rs2281727	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	2230919	2230920	chr17:2230920:T:C	rs216212	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr17	2230930	2230931	chr17:2230931:G:A	rs216213	G	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	2354524	2354525	chr17:2354525:T:A	rs2447106	T	A	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr17	2354569	2354570	chr17:2354570:A:G	rs2447107	A	G	G	Sox1.mouse_HMG_2	3	1	+	7.960161173934588	1.0514063946193666	ATGACTTCCAGTCTT
chr17	2401969	2401970	chr17:2401970:G:A	rs554130816	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr17	2436763	2436764	chr17:2436764:G:C	rs117058497	G	C	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	2489247	2489248	chr17:2489248:C:G	rs8078450	C	G	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	2515428	2515429	chr17:2515429:G:A	rs67061289	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.861237644947296	0.1886505412790408	ATTAATTTCAGTCAA
chr17	2796980	2796981	chr17:2796981:A:G	rs140278381	A	G	a	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr17	2805053	2805054	chr17:2805054:T:C	rs1476460	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr17	2891561	2891562	chr17:2891562:A:G	rs9907411	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr17	2955002	2955003	chr17:2955003:C:T	rs4790383	C	T	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	2985746	2985747	chr17:2985747:G:A	rs117896912	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr17	3036144	3036145	chr17:3036145:A:G	rs4077990	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	3037288	3037289	chr17:3037289:G:A	rs3195014	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr17	3448041	3448042	chr17:3448042:C:T	rs4790484	C	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	3461008	3461009	chr17:3461009:A:G	rs2171582	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	3515163	3515164	chr17:3515164:A:G	rs4790506	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.178776851947939	0.27002207263271993	GTGACTTCAATTCAC
chr17	3660995	3660996	chr17:3660996:T:C	rs1048647	T	C	t	Sox1.mouse_HMG_2	6	1	+	9.597402343557826	6.085992775610854	CTGAATTGGATTCAT
chr17	3660999	3661000	chr17:3661000:T:C	rs1048648	T	C	C	Sox1.mouse_HMG_2	10	1	+	9.597402343557826	2.749460765277544	CTGAATTGGATTCAT
chr17	3771244	3771245	chr17:3771245:C:G	rs11649973	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr17	3796638	3796639	chr17:3796639:A:C	chr17:3796639:A:C	A	C	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr17	3857825	3857826	chr17:3857826:C:T	rs183384	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.2093478138338067	4.083960156556543	GCAAATACCAGTCAC
chr17	4062513	4062514	chr17:4062514:A:G	rs2123845	A	G	A	Sox1.mouse_HMG_2	6	1	-	4.0158686625541105	0.5044590946071384	GAGAATTGCATTCCT
chr17	4313475	4313476	chr17:4313476:T:G	rs62064450	T	G	T	Sox1.mouse_HMG_2	13	1	-	3.4497170117157525	-2.8709989974135945	CTAGATAGCATTCAG
chr17	4365121	4365122	chr17:4365122:A:G	rs117466104	A	G	A	Sox1.mouse_HMG_2	0	1	-	3.295094406158965	3.5610375999283974	TTGAAATACATTTAC
chr17	4405781	4405782	chr17:4405782:C:T	rs35074337	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr17	4420739	4420740	chr17:4420740:A:C	rs68061490	A	C	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr17	4420748	4420749	chr17:4420749:G:A	rs115335322	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	4477012	4477013	chr17:4477013:C:T	rs729535	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr17	4518641	4518642	chr17:4518642:G:T	rs117442243	G	T	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	4834150	4834151	chr17:4834151:G:T	rs111781015	G	T	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	4845318	4845319	chr17:4845319:A:C	chr17:4845319:A:C	A	C	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	4854433	4854434	chr17:4854434:G:C	rs72835022	G	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr17	4858099	4858100	chr17:4858100:T:C	rs79248783	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.355034609302442	-1.5537201700127776	TTGCATAGCAGTCAC
chr17	5115736	5115737	chr17:5115737:G:A	rs11657994	G	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	5365416	5365417	chr17:5365417:A:G	rs2309381	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.656417014603221	-2.1649957545568506	AAGAATAACTTTCAA
chr17	5594033	5594034	chr17:5594034:C:T	rs74412236	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr17	5740932	5740933	chr17:5740933:G:C	rs2058363	G	C	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr17	6061477	6061478	chr17:6061478:T:C	rs143060546	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	6076793	6076794	chr17:6076794:G:C	rs4411546	G	C	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr17	6106885	6106886	chr17:6106886:C:G	rs11078607	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	6126920	6126921	chr17:6126921:G:A	rs145299678	G	A	G	Sox1.mouse_HMG_2	2	1	+	2.923189105700629	-1.7222134273155882	CAGTCTAACATTCAT
chr17	6137685	6137686	chr17:6137686:C:G	rs9891117	C	G	c	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr17	6170463	6170464	chr17:6170464:C:T	rs11655848	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr17	6170464	6170465	chr17:6170465:G:C	rs75828980	G	C	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr17	6186372	6186373	chr17:6186373:G:T	rs4533336	G	T	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr17	6240626	6240627	chr17:6240627:G:A	rs575093873	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr17	6393967	6393968	chr17:6393968:G:A	rs73345295	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr17	6393991	6393992	chr17:6393992:T:A	rs55752424	T	A	t	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	6440202	6440203	chr17:6440203:C:A	rs12947557	C	A	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr17	6482464	6482465	chr17:6482465:A:T	rs76789422	A	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr17	6517230	6517231	chr17:6517231:C:T	rs7218891	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	6642846	6642847	chr17:6642847:G:A	rs78547240	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr17	6755649	6755650	chr17:6755650:T:C	rs955461	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	7007407	7007408	chr17:7007408:G:C	rs111396352	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr17	7094397	7094398	chr17:7094398:A:G	rs112938807	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr17	7460282	7460283	chr17:7460283:G:C	rs149094559	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr17	7648804	7648805	chr17:7648805:C:T	rs72829446	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	7755091	7755092	chr17:7755092:T:C	rs6503057	T	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr17	7755092	7755093	chr17:7755093:G:A	rs6503058	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr17	7838470	7838471	chr17:7838471:C:T	rs545065611	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	7838501	7838502	chr17:7838502:C:T	rs991898499	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr17	7886106	7886107	chr17:7886107:C:T	rs561948925	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr17	7977019	7977020	chr17:7977020:C:T	rs76403446	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr17	7977028	7977029	chr17:7977029:C:T	rs8074694	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr17	8058841	8058842	chr17:8058842:A:G	rs9911432	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr17	8124497	8124498	chr17:8124498:T:G	rs140639313	T	G	T	Sox1.mouse_HMG_2	7	1	-	4.615553754479304	4.2188690338112345	ATGTATAAAATTCAG
chr17	8151613	8151614	chr17:8151614:C:T	rs192136488	C	T	C	Sox1.mouse_HMG_2	7	1	+	2.4475452419792507	1.9866007882721437	CTGGATCCCAGTCAT
chr17	8151621	8151622	chr17:8151622:T:C	rs3027173	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr17	8173150	8173151	chr17:8173151:C:T	rs982168592	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr17	8221075	8221076	chr17:8221076:G:A	rs150235628	G	A	G	Sox1.mouse_HMG_2	2	1	+	6.88790772926906	2.2425051962528437	AGGAATTAAATTCAT
chr17	8294594	8294595	chr17:8294595:C:T	rs146446124	C	T	c	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr17	8354294	8354295	chr17:8354295:C:T	rs4792346	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr17	8360956	8360957	chr17:8360957:A:G	rs187217147	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr17	8571476	8571477	chr17:8571477:C:T	rs72845200	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	8675002	8675003	chr17:8675003:G:A	rs147593779	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr17	8710444	8710445	chr17:8710445:A:G	rs904169	A	G	G	Sox1.mouse_HMG_2	1	1	-	5.010712183623096	0.3667198761298628	TTGGATAACATTTAT
chr17	8806160	8806161	chr17:8806161:G:A	rs60422945	G	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr17	8861601	8861602	chr17:8861602:A:G	rs11652783	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr17	9085231	9085232	chr17:9085232:A:G	rs8074523	A	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr17	9217651	9217652	chr17:9217652:G:A	rs150831954	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr17	9217659	9217660	chr17:9217660:G:A	rs112839006	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr17	9227354	9227355	chr17:9227355:T:A	rs4791821	T	A	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr17	9297877	9297878	chr17:9297878:G:A	rs2531852	G	A	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	9410158	9410159	chr17:9410159:A:C	rs62067153	A	C	A	Sox1.mouse_HMG_2	11	1	-	3.388639609395994	-3.5201151699192264	ATCCATGCCATTCAT
chr17	9472702	9472703	chr17:9472703:T:A	rs117134866	T	A	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr17	9472710	9472711	chr17:9472711:G:T	rs16958320	G	T	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr17	9509767	9509768	chr17:9509768:C:T	rs4791848	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr17	9576358	9576359	chr17:9576359:A:C	rs6503231	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	9576362	9576363	chr17:9576363:T:A	rs117620514	T	A	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr17	9648363	9648364	chr17:9648364:C:A	rs73255715	C	A	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr17	9672513	9672514	chr17:9672514:T:C	rs73255750	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	9770957	9770958	chr17:9770958:A:T	rs11654598	A	T	T	Sox1.mouse_HMG_2	0	1	+	3.96225809838802	3.0274386989002293	ATAAATAGCATTAAA
chr17	9772694	9772695	chr17:9772695:C:T	rs72822108	C	T	C	Sox1.mouse_HMG_2	6	1	-	8.024873148122765	9.465050569991401	ATGAATGACCTTCAG
chr17	9808653	9808654	chr17:9808654:A:G	rs17207780	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr17	9811121	9811122	chr17:9811122:T:G	rs9905487	T	G	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	9893544	9893545	chr17:9893545:C:T	rs62064483	C	T	C	Sox1.mouse_HMG_2	14	1	-	3.988466598489861	3.8238253505949134	TGGAATATTATTCAG
chr17	9969288	9969289	chr17:9969289:A:G	rs16959118	A	G	A	Sox1.mouse_HMG_2	9	1	+	6.627472902004291	-0.2812818773109294	CTAAATTCCATTCTG
chr17	10006259	10006260	chr17:10006260:C:T	rs60590406	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr17	10020360	10020361	chr17:10020361:A:G	rs144864696	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr17	10047576	10047577	chr17:10047577:A:G	chr17:10047577:A:G	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	10216102	10216103	chr17:10216103:A:G	rs60412212	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr17	10233702	10233703	chr17:10233703:G:A	rs8077735	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	10249487	10249488	chr17:10249488:T:C	rs7213745	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr17	10270189	10270190	chr17:10270190:C:G	rs2320557	C	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr17	10310992	10310993	chr17:10310993:A:G	rs10852921	A	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr17	10328557	10328558	chr17:10328558:C:T	rs8068005	C	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr17	10668871	10668872	chr17:10668872:T:C	rs4791414	T	C	T	Sox1.mouse_HMG_2	0	1	-	3.7023949330063486	2.698158700371147	ATGAAGACTATTCAC
chr17	10754292	10754293	chr17:10754293:C:T	chr17:10754293:C:T	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	10775495	10775496	chr17:10775496:C:T	rs7217562	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr17	11035884	11035885	chr17:11035885:A:G	rs75218424	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	11218665	11218666	chr17:11218666:C:T	rs9904109	C	T	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr17	11251121	11251122	chr17:11251122:T:C	rs4792113	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr17	11330717	11330718	chr17:11330718:A:C	rs11869601	A	C	C	Sox1.mouse_HMG_2	4	1	+	2.1336967452001097	-0.24836432266681183	ATGAACAGCATACAC
chr17	11487809	11487810	chr17:11487810:T:C	rs888141	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	11545939	11545940	chr17:11545940:G:A	rs74584377	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr17	11545968	11545969	chr17:11545969:A:C	rs2908957	A	C	A	Sox1.mouse_HMG_2	5	1	-	3.914498934938228	-2.9942558443769918	ATGAATAGAATACAG
chr17	11890446	11890447	chr17:11890447:A:C	rs10445247	A	C	G	Sox1.mouse_HMG_2	10	1	-	3.846271949146341	1.0936744334212434	GTGAATTTCTTTCTC
chr17	12041616	12041617	chr17:12041617:C:A	rs1025419412	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr17	12079030	12079031	chr17:12079031:T:C	chr17:12079031:T:C	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	12079037	12079038	chr17:12079038:T:C	chr17:12079038:T:C	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	12228040	12228041	chr17:12228041:C:G	rs34703377	C	G	C	Sox1.mouse_HMG_2	2	1	-	3.384502403368926	-2.008114531477512	TAGAATTACACTCAC
chr17	12445437	12445438	chr17:12445438:T:C	rs8066651	T	C	C	Sox1.mouse_HMG_2	13	1	-	10.70546069693429	5.759343009161642	ATGATTAACATTCAT
chr17	12545874	12545875	chr17:12545875:A:G	rs740854	A	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	12628665	12628666	chr17:12628666:G:T	rs1401539	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr17	13104790	13104791	chr17:13104791:C:T	rs7208313	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	13114137	13114138	chr17:13114138:T:G	rs76088534	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	13158589	13158590	chr17:13158590:G:A	rs76706479	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr17	13350849	13350850	chr17:13350850:C:A	rs62058690	C	A	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	13423368	13423369	chr17:13423369:G:T	chr17:13423369:G:T	G	T	g	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	13477337	13477338	chr17:13477338:A:G	rs73292014	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr17	13477372	13477373	chr17:13477373:A:G	rs73292015	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr17	13539314	13539315	chr17:13539315:C:T	rs115658419	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr17	13728258	13728259	chr17:13728259:T:C	rs9915497	T	C	C	Sox1.mouse_HMG_2	14	1	-	4.2847698043020195	4.449411052196967	TGGAATACTATTCAA
chr17	13792556	13792557	chr17:13792557:T:C	rs9908451	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr17	13941081	13941082	chr17:13941082:G:A	rs17606262	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr17	14422983	14422984	chr17:14422984:G:A	rs2022237	G	A	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	14621882	14621883	chr17:14621883:C:G	rs12945632	C	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr17	14715694	14715695	chr17:14715695:A:G	rs74374428	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	14727506	14727507	chr17:14727507:T:C	rs11078267	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr17	14779321	14779322	chr17:14779322:T:G	rs2058232	T	G	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr17	15106908	15106909	chr17:15106909:G:A	rs12939369	G	A	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr17	15392861	15392862	chr17:15392862:A:G	rs12449918	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.884565622419223	-1.9633759558610573	TTGTCTTGCATTCAC
chr17	15684088	15684089	chr17:15684089:C:A	rs170912	C	A	c	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	15911735	15911736	chr17:15911736:C:T	rs859253	C	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr17	15963950	15963951	chr17:15963951:C:G	rs146686306	C	G	c	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr17	16025688	16025689	chr17:16025689:C:A	rs62073587	C	A	C	Sox1.mouse_HMG_2	12	1	+	3.3525554185317206	-3.547893231934643	TTGAATTGAAATCAT
chr17	16027734	16027735	chr17:16027735:G:T	rs115686307	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr17	16052986	16052987	chr17:16052987:T:G	rs77583787	T	G	T	Sox1.mouse_HMG_2	11	1	+	5.196872199460295	-1.7118825798549246	TTCAATAAAATTCAG
chr17	16313290	16313291	chr17:16313291:A:C	rs12938878	A	C	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	16486972	16486973	chr17:16486973:G:A	rs76959597	G	A	g	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr17	16487204	16487205	chr17:16487205:T:A	rs16959752	T	A	A	Sox1.mouse_HMG_2	1	1	+	2.2786384934260333	-2.3653538140672	ATGAAAAGCATTCCA
chr17	16889274	16889275	chr17:16889275:T:C	rs8072394	T	C	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr17	16977968	16977969	chr17:16977969:T:C	rs7220753	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr17	16988950	16988951	chr17:16988951:G:A	rs9907308	G	A	A	Sox1.mouse_HMG_2	8	1	-	5.330884284602985	-0.3135424057790023	TTGCATCACATTCAT
chr17	16988958	16988959	chr17:16988959:A:G	rs116846623	A	G	A	Sox1.mouse_HMG_2	0	1	-	5.330884284602985	5.5968274783724175	TTGCATCACATTCAT
chr17	17080625	17080626	chr17:17080626:A:C	rs75129280	A	C	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	17080626	17080627	chr17:17080627:G:T	rs76664572	G	T	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	17242904	17242905	chr17:17242905:C:T	rs9896078	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr17	17419945	17419946	chr17:17419946:C:T	rs4539660	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	17422636	17422637	chr17:17422637:T:G	rs16961675	T	G	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr17	17433428	17433429	chr17:17433429:C:T	rs35649200	C	T	c	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	17533136	17533137	chr17:17533137:C:T	rs7210978	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	17536184	17536185	chr17:17536185:T:C	rs1185925937	T	C	T	Sox1.mouse_HMG_2	13	1	-	3.2637098052145674	-1.6824078825580808	TTGAATAGGATACAT
chr17	17566140	17566141	chr17:17566141:C:T	rs4646360	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr17	17641389	17641390	chr17:17641390:C:T	rs12449964	C	T	C	Sox1.mouse_HMG_2	2	1	-	6.941184338006854	2.2957818049906384	GCGACTTCCATTCAA
chr17	17663399	17663400	chr17:17663400:C:T	rs556648156	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr17	17672505	17672506	chr17:17672506:A:T	rs559285592	A	T	A	Sox1.mouse_HMG_2	11	1	-	7.393805893142918	0.4850511138276975	GAGAATATCAGTCAC
chr17	17690424	17690425	chr17:17690425:T:C	rs573164609	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr17	17749533	17749534	chr17:17749534:T:C	rs182399651	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr17	17750095	17750096	chr17:17750096:A:G	chr17:17750096:A:G	A	G	A	Sox1.mouse_HMG_2	0	1	+	7.335522866375797	6.331286633740595	ATCACTTGCATTCAC
chr17	17750096	17750097	chr17:17750097:T:C	rs12945601	T	C	T	Sox1.mouse_HMG_2	1	1	+	7.335522866375797	2.6915305588825627	ATCACTTGCATTCAC
chr17	17937768	17937769	chr17:17937769:T:C	rs11078407	T	C	t	Sox1.mouse_HMG_2	14	1	+	2.3692561551955893	1.4946438124728534	GTGAACACCACTCAT
chr17	17940881	17940882	chr17:17940882:C:G	rs149996996	C	G	C	Sox1.mouse_HMG_2	10	1	-	3.407855151573571	-0.6874889109816134	TCGAATGACAGTCTG
chr17	18185915	18185916	chr17:18185916:A:C	rs854803	A	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr17	18185920	18185921	chr17:18185921:A:G	rs187841929	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	18221428	18221429	chr17:18221429:G:A	rs62072496	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	18476750	18476751	chr17:18476751:C:G	rs1682221	C	G	C	Sox1.mouse_HMG_2	8	1	+	5.612992406883569	-0.1055422556521396	TTGAATAACAGCCAA
chr17	18626007	18626008	chr17:18626008:T:G	rs186609319	T	G	.	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	18626008	18626009	chr17:18626009:T:A	rs191011614	T	A	.	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr17	18768419	18768420	chr17:18768420:C:A	rs10775382	C	A	A	Sox1.mouse_HMG_2	10	1	-	8.676504164607698	11.429101680332794	GTGACTGCCAGTCAC
chr17	18860763	18860764	chr17:18860764:G:A	rs1037036	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr17	18884662	18884663	chr17:18884663:T:C	rs7222748	T	C	t	Sox1.mouse_HMG_2	14	1	+	7.16157784246055	6.286965499737813	CTGAATATTATTCTT
chr17	18900272	18900273	chr17:18900273:C:T	rs9901087	C	T	c	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	18965563	18965564	chr17:18965564:G:A	rs143204573	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr17	19345300	19345301	chr17:19345301:A:G	rs57560323	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	19378236	19378237	chr17:19378237:T:G	rs974375095	T	G	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr17	19760990	19760991	chr17:19760991:A:C	rs77012836	A	C	A	Sox1.mouse_HMG_2	3	1	+	2.3108171072487522	-4.59793767206647	CTGAATAACATCCCA
chr17	19761004	19761005	chr17:19761005:A:G	rs56150213	A	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr17	19909227	19909228	chr17:19909228:T:C	rs203462	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr17	20083547	20083548	chr17:20083548:T:A	rs4925079	T	A	T	Sox1.mouse_HMG_2	11	1	-	2.194509946235049	9.10326472555027	ATGAATAGCACACAC
chr17	20210903	20210904	chr17:20210904:T:C	rs1544421	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr17	20218231	20218232	chr17:20218232:A:G	rs73981849	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr17	20228500	20228501	chr17:20228501:T:C	rs2703773	T	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr17	20262307	20262308	chr17:20262308:T:C	rs72830202	T	C	.	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr17	20271538	20271539	chr17:20271539:G:A	rs9897328	G	A	.	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr17	20307495	20307496	chr17:20307496:G:A	rs2386429	G	A	.	Sox1.mouse_HMG_2	2	1	-	3.924377901618348	2.4203005048420736	TTCACTTTCATTCTT
chr17	20476826	20476827	chr17:20476827:C:G	rs56204413	C	G	c	Sox1.mouse_HMG_2	14	1	-	3.00781886653769	3.2862746406026924	GGGACTGCCATTCTG
chr17	20665303	20665304	chr17:20665304:A:G	rs58233933	A	G	.	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr17	20698971	20698972	chr17:20698972:G:C	rs780823931	G	C	.	Sox1.mouse_HMG_2	8	1	-	5.612992406883569	-0.1055422556521396	TTGAATAACAGCCAA
chr17	20934586	20934587	chr17:20934587:T:G	rs11204323	T	G	.	Sox1.mouse_HMG_2	9	1	-	5.276655377392529	-1.6320994019226926	CTGTATAACATTTAT
chr17	20955385	20955386	chr17:20955386:T:C	rs59922030	T	C	.	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	21046374	21046375	chr17:21046375:A:G	rs4985969	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	21099823	21099824	chr17:21099824:A:G	rs191929784	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	21199524	21199525	chr17:21199525:A:C	rs17771444	A	C	A	Sox1.mouse_HMG_2	5	1	+	4.918016785365782	4.918016785365782	CTGAAAGCCATTCTT
chr17	21275242	21275243	chr17:21275243:C:A	chr17:21275243:C:A	C	A	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr17	21300874	21300875	chr17:21300875:G:T	rs56067280	G	T	g	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr17	21324510	21324511	chr17:21324511:A:G	rs143132312	A	G	A	Sox1.mouse_HMG_2	13	1	+	2.4837341997469657	-2.4623834880256825	ATTCATTCCATTCAT
chr17	21499804	21499805	chr17:21499805:C:A	rs12942026	C	A	C	Sox1.mouse_HMG_2	8	1	+	5.614315306404638	0.7648184908925388	TTCAATTCCATTCTG
chr17	21667593	21667594	chr17:21667594:A:T	rs1352998539	A	T	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr17	21667617	21667618	chr17:21667618:G:A	rs1410850914	G	A	.	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr17	21669258	21669259	chr17:21669259:T:A	rs4114275	T	A	.	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	21669264	21669265	chr17:21669265:G:C	rs4114276	G	C	.	Sox1.mouse_HMG_2	2	1	+	2.3084429541606513	-3.084173980685789	GTGAATACCCTGCAT
chr17	21706769	21706770	chr17:21706770:G:A	rs1213358141	G	A	.	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr17	21708592	21708593	chr17:21708593:G:T	rs1486329607	G	T	.	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	21756268	21756269	chr17:21756269:G:A	rs1340768152	G	A	.	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	21756280	21756281	chr17:21756281:G:A	rs1274616660	G	A	.	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	21856379	21856380	chr17:21856380:G:C	rs1170661830	G	C	.	Sox1.mouse_HMG_2	7	1	-	3.933536214040907	3.6291661151679024	TTGCATTCCATTCTA
chr17	21972548	21972549	chr17:21972549:A:G	rs1171159994	A	G	.	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr17	21980452	21980453	chr17:21980453:G:T	rs1281953092	G	T	.	Sox1.mouse_HMG_2	12	1	-	6.196888460339912	-0.7035601901264515	TTAAATTCCATTCTA
chr17	21980712	21980713	chr17:21980713:A:G	rs1473971608	A	G	.	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr17	21981441	21981442	chr17:21981442:T:C	rs912005942	T	C	.	Sox1.mouse_HMG_2	14	1	-	5.44967405850969	5.614315306404638	TTCAATTCCATTCTA
chr17	21985368	21985369	chr17:21985369:T:C	chr17:21985369:T:C	T	C	.	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr17	22145836	22145837	chr17:22145837:C:A	rs76596352	C	A	.	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr17	26792693	26792694	chr17:26792694:A:C	chr17:26792694:A:C	A	C	N	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr17	26792696	26792697	chr17:26792697:G:A	chr17:26792697:G:A	G	A	N	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	26800067	26800068	chr17:26800068:G:T	chr17:26800068:G:T	G	T	N	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr17	26802563	26802564	chr17:26802564:C:G	rs1269995626	C	G	N	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr17	26837889	26837890	chr17:26837890:T:G	rs879083147	T	G	N	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	26861440	26861441	chr17:26861441:T:G	rs1377947766	T	G	N	Sox1.mouse_HMG_2	13	1	-	8.644037611667985	2.323321602538636	TTCAATTCCATTCAA
chr17	26864431	26864432	chr17:26864432:G:A	rs1414871486	G	A	N	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	26866850	26866851	chr17:26866851:T:G	rs1217653207	T	G	N	Sox1.mouse_HMG_2	7	1	-	5.776638445881416	5.379953725213347	ATAAATTACATTCGA
chr17	26936702	26936703	chr17:26936703:G:C	rs796216678	G	C	g	Sox1.mouse_HMG_2	8	1	-	7.7159385373850755	1.9974038748493665	TTGAATTCCATTCCA
chr17	26938825	26938826	chr17:26938826:A:T	rs187558478	A	T	a	Sox1.mouse_HMG_2	1	1	-	3.697919923895335	-0.9460723835978996	TTCAATTCCATTCGA
chr17	27089291	27089292	chr17:27089292:C:T	rs11867203	C	T	t	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr17	27230969	27230970	chr17:27230970:T:A	rs16965175	T	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr17	27239602	27239603	chr17:27239603:T:G	rs62057211	T	G	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr17	27332671	27332672	chr17:27332672:T:C	rs748994561	T	C	T	Sox1.mouse_HMG_2	13	1	-	1.885978331895544	-3.060139355877104	GTGACTGACAGCCAG
chr17	27333349	27333350	chr17:27333350:G:A	rs79730408	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr17	27354143	27354144	chr17:27354144:T:C	rs1232413370	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr17	27354766	27354767	chr17:27354767:T:C	rs62058596	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr17	27370901	27370902	chr17:27370902:T:C	rs1676586	T	C	C	Sox1.mouse_HMG_2	0	1	+	14.89341945749	15.159362651259434	TTGAATTTCATTCAT
chr17	27492385	27492386	chr17:27492386:C:T	rs61294005	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	27547311	27547312	chr17:27547312:C:T	rs2945386	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr17	27547340	27547341	chr17:27547341:C:T	rs117533295	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	27595518	27595519	chr17:27595519:G:A	rs4795774	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	27596781	27596782	chr17:27596782:A:G	rs9902634	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr17	27651463	27651464	chr17:27651464:T:C	rs4794980	T	C	T	Sox1.mouse_HMG_2	4	1	-	6.800153190302658	-0.021259578857413808	ATGAATTGCATTTTA
chr17	27683904	27683905	chr17:27683905:G:A	rs11652274	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr17	27861292	27861293	chr17:27861293:C:T	rs954822513	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	27915821	27915822	chr17:27915822:C:A	rs11657739	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	27966536	27966537	chr17:27966537:A:G	rs11080046	A	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr17	27976051	27976052	chr17:27976052:A:T	rs7214317	A	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr17	28163244	28163245	chr17:28163245:T:C	rs112040571	T	C	T	Sox1.mouse_HMG_2	13	1	+	2.414866876846747	-0.7114855791243072	CTGACTAGCAATCTA
chr17	28180749	28180750	chr17:28180750:C:G	rs73989107	C	G	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	28262408	28262409	chr17:28262409:C:T	rs183652196	C	T	c	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	28563584	28563585	chr17:28563585:A:C	rs112122996	A	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	28571679	28571680	chr17:28571680:G:A	rs529935145	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr17	28769585	28769586	chr17:28769586:C:T	rs34463441	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	28907280	28907281	chr17:28907281:G:A	rs548755084	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr17	28968371	28968372	chr17:28968372:C:T	rs868572508	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	28968410	28968411	chr17:28968411:G:A	rs773848903	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	28968412	28968413	chr17:28968413:C:T	rs116294447	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	29181514	29181515	chr17:29181515:A:G	rs79874758	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.417126436036855	-3.404286333123217	TGGAATAACATGCAA
chr17	29197482	29197483	chr17:29197483:C:A	rs9897342	C	A	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	29339204	29339205	chr17:29339205:G:A	rs116667229	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	29777976	29777977	chr17:29777977:C:T	rs370353167	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.736436223876443	0.09103369086022639	AAGAATTCCTTTCAT
chr17	29841554	29841555	chr17:29841555:T:C	rs17226179	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr17	29846640	29846641	chr17:29846641:A:G	rs56088359	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr17	29858095	29858096	chr17:29858096:A:C	rs373556008	A	C	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	30200634	30200635	chr17:30200635:A:C	rs12449783	A	C	A	Sox1.mouse_HMG_2	13	1	-	4.274472897227681	2.5227187626133247	ATGAATACCAGACTT
chr17	30345149	30345150	chr17:30345150:C:T	rs116171911	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr17	30360177	30360178	chr17:30360178:G:A	rs7215966	G	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr17	30377521	30377522	chr17:30377522:T:C	rs145358518	T	C	T	Sox1.mouse_HMG_2	9	1	-	1.9702905965019224	-4.938464182813298	GGGAATTGCATGCAG
chr17	30669222	30669223	chr17:30669223:T:C	rs11657597	T	C	.	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr17	31314916	31314917	chr17:31314917:C:A	rs7503922	C	A	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr17	31395790	31395791	chr17:31395791:A:T	rs731759	A	T	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	31402231	31402232	chr17:31402232:C:T	rs8080492	C	T	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr17	31494865	31494866	chr17:31494866:T:C	rs7213279	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	32085337	32085338	chr17:32085338:T:C	rs3925207	T	C	.	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr17	32112304	32112305	chr17:32112305:G:A	rs3809786	G	A	.	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr17	32382694	32382695	chr17:32382695:C:T	rs117628426	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	32534846	32534847	chr17:32534847:G:A	rs1034593	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr17	32863705	32863706	chr17:32863706:A:G	rs62070187	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr17	32924035	32924036	chr17:32924036:C:T	rs7210392	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	32924079	32924080	chr17:32924080:C:T	rs4605221	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr17	32924080	32924081	chr17:32924081:G:A	rs4490045	G	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	33072577	33072578	chr17:33072578:G:A	rs223031	G	A	G	Sox1.mouse_HMG_2	5	1	+	2.199482267004168	2.199482267004168	CTGAAGTACTTTCAT
chr17	33162079	33162080	chr17:33162080:C:A	rs7212519	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr17	33212124	33212125	chr17:33212125:A:T	rs8082191	A	T	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	33291116	33291117	chr17:33291117:A:C	rs111531488	A	C	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr17	33439907	33439908	chr17:33439908:C:G	rs972860	C	G	G	Sox1.mouse_HMG_2	11	1	-	4.884565622419223	4.884565622419223	TTGACTTGCATGCAC
chr17	33443714	33443715	chr17:33443715:C:T	rs4530183	C	T	-	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	33482280	33482281	chr17:33482281:A:G	rs12451359	A	G	G	Sox1.mouse_HMG_2	10	1	-	9.217197733475873	2.3692561551955906	GTGAATACCATGCAT
chr17	33753531	33753532	chr17:33753532:G:T	rs117761221	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr17	33945882	33945883	chr17:33945883:A:G	rs78845120	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr17	34048978	34048979	chr17:34048979:T:C	rs6505393	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	34055817	34055818	chr17:34055818:T:G	rs1989944	T	G	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	34259275	34259276	chr17:34259276:A:G	rs569006296	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr17	34467525	34467526	chr17:34467526:C:T	rs919657	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr17	34486782	34486783	chr17:34486783:T:C	rs10853163	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr17	34501284	34501285	chr17:34501285:G:A	rs1437214	G	A	G	Sox1.mouse_HMG_2	2	1	-	8.278317572708414	6.774240175932138	GTCAATTTCATTCAG
chr17	34622678	34622679	chr17:34622679:C:T	rs2009472	C	T	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr17	34741360	34741361	chr17:34741361:G:A	rs8082524	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	34859373	34859374	chr17:34859374:T:C	rs145222035	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	35284879	35284880	chr17:35284880:C:T	rs772123	C	T	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr17	35453324	35453325	chr17:35453325:G:A	rs141222853	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr17	35490402	35490403	chr17:35490403:A:G	rs9909601	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr17	35567830	35567831	chr17:35567831:C:G	rs11655098	C	G	C	Sox1.mouse_HMG_2	0	1	+	3.9399715547460286	3.604611527829185	CTGCCTAACAGTCAC
chr17	35567843	35567844	chr17:35567844:A:G	rs321602	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.9399715547460286	-1.0061461330266195	CTGCCTAACAGTCAC
chr17	35973710	35973711	chr17:35973711:C:A	rs61054586	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr17	36002488	36002489	chr17:36002489:A:C	rs854626	A	C	C	Sox1.mouse_HMG_2	13	1	+	5.861060797555791	-0.4596552115735565	TTGTCTGACATTCAT
chr17	36106440	36106441	chr17:36106441:G:A	rs1634519	G	A	G	Sox1.mouse_HMG_2	11	1	+	3.3236892023339872	3.3236892023339872	TAGAATTACATGCAC
chr17	36109535	36109536	chr17:36109536:A:C	rs9904307	A	C	a	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	36115078	36115079	chr17:36115079:T:C	rs1719182	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr17	36213725	36213726	chr17:36213726:A:G	rs201439534	A	G	.	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr17	36222640	36222641	chr17:36222641:A:T	rs1490398333	A	T	.	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr17	36468428	36468429	chr17:36468429:T:C	rs76654913	T	C	t	Sox1.mouse_HMG_2	14	1	+	2.8683584727225258	1.99374612999979	ATGAACTACGTTCAT
chr17	36468439	36468440	chr17:36468440:C:T	rs6607370	C	T	t	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	36784283	36784284	chr17:36784284:C:T	rs9912522	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	36891144	36891145	chr17:36891145:G:A	rs17571920	G	A	G	Sox1.mouse_HMG_2	9	1	-	1.5521625496368991	1.5521625496368991	CTGATTAGCCTTCAC
chr17	36972932	36972933	chr17:36972933:A:G	rs9330246	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr17	37446315	37446316	chr17:37446316:C:T	rs2898656	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	37531240	37531241	chr17:37531241:G:A	rs3110629	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	37531281	37531282	chr17:37531282:C:G	rs3110628	C	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr17	37532949	37532950	chr17:37532950:T:C	rs567592747	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	37803178	37803179	chr17:37803179:A:G	rs1474054	A	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	37850527	37850528	chr17:37850528:T:C	rs7224568	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	37859770	37859771	chr17:37859771:T:C	rs55788166	T	C	c	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr17	38452895	38452896	chr17:38452896:C:T	rs12942139	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr17	38583851	38583852	chr17:38583852:C:G	rs8071088	C	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	38609649	38609650	chr17:38609650:C:T	rs7210925	C	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr17	38898204	38898205	chr17:38898205:T:C	rs12943799	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr17	38898208	38898209	chr17:38898209:C:G	rs8075092	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr17	39094812	39094813	chr17:39094813:T:G	rs9893861	T	G	T	Sox1.mouse_HMG_2	11	1	+	2.34228002818699	-4.566474751128229	ATTACTGCCATTCTC
chr17	39106168	39106169	chr17:39106169:T:A	rs150458825	T	A	T	Sox1.mouse_HMG_2	3	1	-	2.110703325615246	-4.798051453699976	TGGAGTGCCATTCAC
chr17	39126327	39126328	chr17:39126328:A:G	rs58201933	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr17	39166626	39166627	chr17:39166627:A:G	rs3025204	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr17	39450554	39450555	chr17:39450555:T:C	rs180733764	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr17	39548458	39548459	chr17:39548459:T:C	rs4332770	T	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr17	39618096	39618097	chr17:39618097:G:T	rs543058106	G	T	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr17	39969542	39969543	chr17:39969543:C:G	rs3859194	C	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr17	39969542	39969543	chr17:39969543:C:T	chr17:39969543:C:T	C	T	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr17	39973742	39973743	chr17:39973743:A:T	rs60137005	A	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	40016051	40016052	chr17:40016052:T:C	rs2071369	T	C	C	Sox1.mouse_HMG_2	6	1	+	3.6755816486782003	0.16417208073122896	AGGCATTACATTCAG
chr17	40303775	40303776	chr17:40303776:T:G	rs146560092	T	G	T	Sox1.mouse_HMG_2	13	1	-	5.5632124853853915	-0.7575035237439556	CTCAATCCCATTCAG
chr17	40431429	40431430	chr17:40431430:T:C	rs117704776	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	40445863	40445864	chr17:40445864:C:T	chr17:40445864:C:T	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr17	40559586	40559587	chr17:40559587:A:C	rs76716642	A	C	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr17	40568577	40568578	chr17:40568578:C:T	rs1468298051	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	40601536	40601537	chr17:40601537:C:T	rs1358175	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr17	40609413	40609414	chr17:40609414:C:T	rs7218478	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr17	40779868	40779869	chr17:40779869:A:G	rs77854608	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	40794680	40794681	chr17:40794681:C:A	rs16966289	C	A	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr17	40810937	40810938	chr17:40810938:T:C	rs7226176	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr17	40845057	40845058	chr17:40845058:T:C	rs17474883	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr17	40979069	40979070	chr17:40979070:C:T	rs8068223	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr17	41034286	41034287	chr17:41034287:A:T	rs12936959	A	T	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr17	41284730	41284731	chr17:41284731:G:A	rs11658552	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr17	41416460	41416461	chr17:41416461:A:C	rs59538284	A	C	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr17	41462467	41462468	chr17:41462468:T:C	rs2071565	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	41615648	41615649	chr17:41615649:C:G	rs774316594	C	G	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr17	41710563	41710564	chr17:41710564:C:A	rs34997578	C	A	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	42076031	42076032	chr17:42076032:G:A	rs73311609	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	42215971	42215972	chr17:42215972:G:A	rs16967580	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr17	42282840	42282841	chr17:42282841:A:G	rs56938023	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr17	42453447	42453448	chr17:42453448:T:C	rs66774412	T	C	t	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	42517632	42517633	chr17:42517633:G:A	rs573572270	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr17	42553081	42553082	chr17:42553082:C:T	rs597255	C	T	C	Sox1.mouse_HMG_2	14	1	-	1.9820595878383669	1.8174183399434192	CTGACTTCCCTTCTG
chr17	42980427	42980428	chr17:42980428:T:A	rs971007167	T	A	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	43436137	43436138	chr17:43436138:C:T	chr17:43436138:C:T	C	T	C	Sox1.mouse_HMG_2	12	1	+	1.802797546336099	-2.869789557332156	CTGAATTCCTTCCAT
chr17	43468310	43468311	chr17:43468311:A:C	rs1246176627	A	C	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	43480605	43480606	chr17:43480606:G:A	rs9903373	G	A	g	Sox1.mouse_HMG_2	10	1	+	5.559037535311527	1.4636934727563438	ATGAATGACAGTAAC
chr17	43530947	43530948	chr17:43530948:G:C	rs532520947	G	C	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	43536444	43536445	chr17:43536445:A:T	rs768185480	A	T	A	Sox1.mouse_HMG_2	1	1	-	7.64582621901873	3.0018339115254955	CTGATTTCCATTCAG
chr17	43616026	43616027	chr17:43616027:A:G	rs11079736	A	G	A	Sox1.mouse_HMG_2	6	1	+	2.643637800831331	1.2034603789626914	ATGGTTAACATTCAG
chr17	43648192	43648193	chr17:43648193:G:T	rs1966347	G	T	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr17	43650098	43650099	chr17:43650099:T:C	rs4792902	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	43723177	43723178	chr17:43723178:G:A	rs145619456	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr17	43802258	43802259	chr17:43802259:C:T	rs4793033	C	T	T	Sox1.mouse_HMG_2	12	1	+	2.712004634911172	-1.960582468757083	CCGCATGACATTCAG
chr17	44032457	44032458	chr17:44032458:T:C	rs2523165	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	44230014	44230015	chr17:44230015:G:A	rs12952736	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	44363472	44363473	chr17:44363473:C:G	rs374130474	C	G	c	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr17	44444861	44444862	chr17:44444862:G:A	rs4793106	G	A	A	Sox1.mouse_HMG_2	8	1	-	6.028300914877047	0.38387422449506053	CTAAATGCCATTCTG
chr17	44444884	44444885	chr17:44444885:T:A	rs146683166	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	44505859	44505860	chr17:44505860:C:G	rs7212640	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr17	44505867	44505868	chr17:44505868:G:A	rs4793114	G	A	g	Sox1.mouse_HMG_2	8	1	-	2.900461824344213	-2.7439648660377727	ATGTCTGGCATTCTT
chr17	44907923	44907924	chr17:44907924:C:G	rs530101302	C	G	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	45016771	45016772	chr17:45016772:C:T	rs6503410	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	45093538	45093539	chr17:45093539:C:T	rs2239921	C	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr17	45249860	45249861	chr17:45249861:A:G	rs149532487	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr17	45581453	45581454	chr17:45581454:C:G	rs1393433114	C	G	.	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr17	45856212	45856213	chr17:45856213:C:A	rs62054832	C	A	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr17	46013279	46013280	chr17:46013280:A:G	rs12150170	A	G	G	Sox1.mouse_HMG_2	4	1	-	2.275691060217946	6.715042761511096	CTGATTGACATTCCT
chr17	46040030	46040031	chr17:46040031:A:G	rs10514897	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr17	46137151	46137152	chr17:46137152:C:T	rs62063210	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr17	46151706	46151707	chr17:46151707:G:A	rs77829802	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr17	46264960	46264961	chr17:46264961:T:G	rs2696437	T	G	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	46283764	46283765	chr17:46283765:C:A	rs75265619	C	A	.	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr17	46756328	46756329	chr17:46756329:C:T	rs1272956304	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr17	46812336	46812337	chr17:46812337:C:T	rs3916033	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	46844448	46844449	chr17:46844449:A:G	rs11079739	A	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	47211728	47211729	chr17:47211729:G:A	rs59349147	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr17	47253460	47253461	chr17:47253461:C:A	rs7208055	C	A	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	47323756	47323757	chr17:47323757:C:T	rs189167751	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	47323763	47323764	chr17:47323764:G:A	rs546048927	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr17	47323764	47323765	chr17:47323765:C:T	rs921043209	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr17	47708033	47708034	chr17:47708034:A:G	rs16943870	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	47782660	47782661	chr17:47782661:G:T	rs62076097	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	47831038	47831039	chr17:47831039:C:T	rs7220419	C	T	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr17	47843141	47843142	chr17:47843142:C:T	rs16948722	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	48023504	48023505	chr17:48023505:C:T	rs9914123	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	48459095	48459096	chr17:48459096:T:C	rs7213163	T	C	T	Sox1.mouse_HMG_2	4	1	-	2.8410077687502144	-3.9804050004098563	CTCAATTACATACAC
chr17	48628432	48628433	chr17:48628433:C:T	rs76457348	C	T	C	Sox1.mouse_HMG_2	6	1	+	4.431564479329958	7.9429740472769295	ATGAATCACAGTTAA
chr17	48679682	48679683	chr17:48679683:G:A	rs3096645	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr17	48691706	48691707	chr17:48691707:C:T	rs12941331	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr17	48755422	48755423	chr17:48755423:C:T	rs187315041	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr17	48786535	48786536	chr17:48786536:C:T	rs7209108	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr17	48925858	48925859	chr17:48925859:G:T	rs957557	G	T	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr17	48987728	48987729	chr17:48987729:G:T	rs4794012	G	T	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr17	49120880	49120881	chr17:49120881:C:T	rs2898834	C	T	c	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr17	49141596	49141597	chr17:49141597:G:A	rs6504599	G	A	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr17	49141611	49141612	chr17:49141612:C:T	rs55636513	C	T	c	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	49345147	49345148	chr17:49345148:C:T	rs35073649	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	49345148	49345149	chr17:49345149:G:A	rs112103192	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	49552558	49552559	chr17:49552559:C:T	rs140254115	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	49746691	49746692	chr17:49746692:C:T	rs145912572	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	49747242	49747243	chr17:49747243:A:G	rs2120106	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	49749004	49749005	chr17:49749005:T:C	rs878829	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr17	49915732	49915733	chr17:49915733:T:C	rs890399	T	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr17	49959922	49959923	chr17:49959923:C:G	rs35785126	C	G	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	49981279	49981280	chr17:49981280:G:A	rs11653481	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr17	50080136	50080137	chr17:50080137:A:T	rs2301625	A	T	T	Sox1.mouse_HMG_2	5	1	-	5.454878915061662	-1.4538758642535587	CTGACTTCCTTTCAC
chr17	50094730	50094731	chr17:50094731:C:A	rs111564639	C	A	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr17	50096106	50096107	chr17:50096107:C:G	rs16948701	C	G	C	Sox1.mouse_HMG_2	14	1	-	3.9337072657313152	4.212163039796318	ATGTCTACCAGTCAG
chr17	50164370	50164371	chr17:50164371:C:T	rs2586471	C	T	C	Sox1.mouse_HMG_2	7	1	+	3.543286834077959	3.0823423803708527	CTGCCTACCAGTCAC
chr17	50173749	50173750	chr17:50173750:T:C	rs2586476	T	C	C	Sox1.mouse_HMG_2	1	1	+	1.8899789140451937	-2.75401339344804	CTGAATTCCAGACTC
chr17	50196541	50196542	chr17:50196542:A:C	rs17639446	A	C	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	50641409	50641410	chr17:50641410:T:A	chr17:50641410:T:A	T	A	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr17	50672381	50672382	chr17:50672382:T:C	rs8079556	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr17	50689203	50689204	chr17:50689204:A:G	rs976171154	A	G	A	Sox1.mouse_HMG_2	14	1	-	4.180267579899958	3.3056552371772217	TTAAATATCTTTCAT
chr17	50691124	50691125	chr17:50691125:A:G	rs1051640	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.371852092842697	-1.4495606763173756	CTGAATTTGATTCTC
chr17	50788180	50788181	chr17:50788181:T:C	rs4239169	T	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr17	50799187	50799188	chr17:50799188:C:T	rs542690816	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr17	50885558	50885559	chr17:50885559:T:C	rs12150160	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	50943493	50943494	chr17:50943494:G:A	rs9907934	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	51046122	51046123	chr17:51046123:G:T	rs78893046	G	T	G	Sox1.mouse_HMG_2	8	1	-	3.813803625372535	-1.0356931901395634	TGGACTTGCAGTCAG
chr17	51290775	51290776	chr17:51290776:A:G	rs12948421	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr17	51496808	51496809	chr17:51496809:T:C	rs4502265	T	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr17	51594070	51594071	chr17:51594071:A:G	rs11651907	A	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	51618025	51618026	chr17:51618026:T:C	rs7207083	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	51682607	51682608	chr17:51682608:C:T	rs1271307	C	T	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr17	51741655	51741656	chr17:51741656:C:T	rs1003290	C	T	c	Sox1.mouse_HMG_2	14	1	-	2.8205103459396312	2.6558690980446835	CTGACATACAGTCAG
chr17	51869605	51869606	chr17:51869606:G:A	rs117074294	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	51914475	51914476	chr17:51914476:G:A	rs188028	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	52207298	52207299	chr17:52207299:C:T	rs116867342	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	52215235	52215236	chr17:52215236:A:G	rs1532748	A	G	G	Sox1.mouse_HMG_2	7	1	+	3.5814770055815197	2.8804221860404438	TTGACTTAGATTCTC
chr17	52221702	52221703	chr17:52221703:A:G	rs34826545	A	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	52221718	52221719	chr17:52221719:G:A	rs35824492	G	A	G	Sox1.mouse_HMG_2	8	1	-	2.471673752054456	-3.172752938327531	ATGAAATCCTTTCAT
chr17	52738816	52738817	chr17:52738817:T:C	rs16952060	T	C	C	Sox1.mouse_HMG_2	6	1	-	2.617108991711121	1.176931569842483	ATGAAGAACACTCAG
chr17	53136865	53136866	chr17:53136866:T:C	rs8073304	T	C	C	Sox1.mouse_HMG_2	5	1	+	4.313597195075196	-2.5951575842400243	TTGTATATCATTCTA
chr17	53142100	53142101	chr17:53142101:C:G	rs807139	C	G	C	Sox1.mouse_HMG_2	8	1	+	4.433824874296404	-1.284709788239306	ATGAATGCCCTTCTG
chr17	53236992	53236993	chr17:53236993:C:T	rs2222372	C	T	C	Sox1.mouse_HMG_2	7	1	-	12.180416113537069	12.881470933078147	ATAAATAGCATTCAT
chr17	53456216	53456217	chr17:53456217:G:C	rs550933477	G	C	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr17	54570598	54570599	chr17:54570599:G:A	rs9904781	G	A	G	Sox1.mouse_HMG_2	14	1	-	1.5729328992565148	2.4475452419792507	CTGCATCCCAGTCAC
chr17	54609264	54609265	chr17:54609265:T:C	rs9914787	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	54796550	54796551	chr17:54796551:T:C	rs76042669	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.828533138432087	-2.0802216408831335	CTAAATGCCATTTAC
chr17	54867844	54867845	chr17:54867845:C:T	rs77202216	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr17	54946023	54946024	chr17:54946024:C:T	rs11869723	C	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr17	55302449	55302450	chr17:55302450:C:T	rs4794562	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr17	55387261	55387262	chr17:55387262:A:T	rs7223336	A	T	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr17	55497012	55497013	chr17:55497013:G:A	rs9891348	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr17	55566149	55566150	chr17:55566150:A:T	rs7220669	A	T	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	55623922	55623923	chr17:55623923:G:A	rs9892595	G	A	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	55742979	55742980	chr17:55742980:C:T	rs2912545	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.4008794274466005	4.275491770169337	ACGTATTTCATTCAC
chr17	56176956	56176957	chr17:56176957:T:C	rs16956842	T	C	C	Sox1.mouse_HMG_2	6	1	-	6.576277744288206	5.136100322419568	TTGAGTAACATTCTT
chr17	56291524	56291525	chr17:56291525:T:G	rs116362869	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr17	56681643	56681644	chr17:56681644:C:T	rs755267386	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr17	56740863	56740864	chr17:56740864:T:C	rs8069500	T	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	56806722	56806723	chr17:56806723:A:T	rs72837354	A	T	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	56877444	56877445	chr17:56877445:C:T	rs1822405	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr17	57052251	57052252	chr17:57052252:C:A	rs7218578	C	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr17	57195493	57195494	chr17:57195494:A:C	rs73321757	A	C	A	Sox1.mouse_HMG_2	10	1	-	4.705124815634892	1.9525272999097938	GTGAACACCATTCTA
chr17	57358018	57358019	chr17:57358019:C:T	rs80113802	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr17	57440616	57440617	chr17:57440617:A:G	chr17:57440617:A:G	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr17	57473472	57473473	chr17:57473473:A:G	rs2586232	A	G	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr17	57481821	57481822	chr17:57481822:A:C	rs12948073	A	C	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	57623052	57623053	chr17:57623053:A:G	rs952914971	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.911255348002137	-1.9974994313130834	TTGAATTAAATTTAA
chr17	57916610	57916611	chr17:57916611:C:T	rs142489310	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr17	57916632	57916633	chr17:57916633:T:A	rs182177639	T	A	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr17	57928630	57928631	chr17:57928631:T:A	rs10515152	T	A	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr17	58080255	58080256	chr17:58080256:G:A	rs8065435	G	A	N	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr17	58091797	58091798	chr17:58091798:A:G	rs145782652	A	G	.	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	58308745	58308746	chr17:58308746:G:A	rs146913417	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	58414604	58414605	chr17:58414605:T:C	rs2680687	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	58576086	58576087	chr17:58576087:G:C	rs9893027	G	C	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr17	58578424	58578425	chr17:58578425:T:G	rs11658998	T	G	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr17	59423821	59423822	chr17:59423822:A:T	rs117262092	A	T	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr17	59441433	59441434	chr17:59441434:G:A	rs116933436	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr17	59756333	59756334	chr17:59756334:A:G	rs114012303	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr17	59837232	59837233	chr17:59837233:G:T	rs7218748	G	T	G	Sox1.mouse_HMG_2	8	1	+	5.199802329294045	5.273910301447767	GTGAATTTGAGTCAG
chr17	60092197	60092198	chr17:60092198:C:T	rs72843510	C	T	c	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr17	60142947	60142948	chr17:60142948:A:G	rs192522358	A	G	-	Sox1.mouse_HMG_2	0	1	-	5.1440651106897315	5.410008304459164	TGAAATAGCATTCAG
chr17	60390716	60390717	chr17:60390717:G:A	rs73322612	G	A	G	Sox1.mouse_HMG_2	10	1	+	3.3396534977398926	-0.7556905648152908	TTGAATACCCGTCTT
chr17	60524769	60524770	chr17:60524770:G:A	rs142122062	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr17	61002667	61002668	chr17:61002668:G:A	rs78039895	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	61279618	61279619	chr17:61279619:G:T	rs77810220	G	T	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	61374927	61374928	chr17:61374928:A:G	rs9891004	A	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	61417212	61417213	chr17:61417213:C:G	chr17:61417213:C:G	C	G	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	61417212	61417213	chr17:61417213:C:T	rs882367	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	61479269	61479270	chr17:61479270:C:G	rs3785823	C	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	61497236	61497237	chr17:61497237:C:T	rs1069	C	T	C	Sox1.mouse_HMG_2	0	1	+	4.2710335318930746	4.005090338123642	CGGAATTATATTCAG
chr17	61598019	61598020	chr17:61598020:C:T	rs728368	C	T	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr17	62149601	62149602	chr17:62149602:A:G	rs4968484	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr17	62453967	62453968	chr17:62453968:A:C	rs7218749	A	C	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr17	62728342	62728343	chr17:62728343:A:G	rs9891305	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr17	62728351	62728352	chr17:62728352:C:T	rs9891513	C	T	T	Sox1.mouse_HMG_2	1	1	+	10.124994372049803	14.768986679543039	ACGAATGACATTCAA
chr17	62805355	62805356	chr17:62805356:G:C	rs9902932	G	C	.	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	62827450	62827451	chr17:62827451:A:G	rs9908887	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	62915672	62915673	chr17:62915673:A:T	rs13339687	A	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr17	63040149	63040150	chr17:63040150:G:T	rs16946732	G	T	G	Sox1.mouse_HMG_2	8	1	-	6.355639530594292	1.506142715082193	CTGCATTACAGTCAT
chr17	63274036	63274037	chr17:63274037:A:G	rs12150068	A	G	A	Sox1.mouse_HMG_2	12	1	-	4.627822218428199	9.300409322096455	ATGAATAACATGTAA
chr17	63787426	63787427	chr17:63787427:T:C	rs9747164	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr17	63850413	63850414	chr17:63850414:T:C	rs2584615	T	C	t	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	64000035	64000036	chr17:64000036:C:T	rs186994270	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	64129077	64129078	chr17:64129078:G:A	rs3088093	G	A	G	Sox1.mouse_HMG_2	13	1	+	3.793152423648556	8.739270111421204	GTGAAAAACATTCGC
chr17	64230541	64230542	chr17:64230542:C:G	rs4968615	C	G	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	64240638	64240639	chr17:64240639:A:G	rs9915054	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr17	64240992	64240993	chr17:64240993:A:G	rs149464130	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr17	64241021	64241022	chr17:64241022:T:C	rs17563641	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr17	64241079	64241080	chr17:64241080:T:C	rs537086132	T	C	T	Sox1.mouse_HMG_2	4	1	-	1.572932899256515	-5.248479869903557	CTGAATCCCAGACAC
chr17	64241101	64241102	chr17:64241102:C:T	rs12952521	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr17	64457383	64457384	chr17:64457384:A:G	rs974125112	A	G	A	Sox1.mouse_HMG_2	3	1	+	3.924377901618348	-2.9843768776968704	TTCACTTTCATTCTT
chr17	64457402	64457403	chr17:64457403:C:T	rs921265348	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr17	64498020	64498021	chr17:64498021:G:A	rs9905689	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr17	64504634	64504635	chr17:64504635:C:T	rs2075552	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	64635693	64635694	chr17:64635694:T:C	rs188126319	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr17	64635702	64635703	chr17:64635703:C:A	rs56183125	C	A	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	64671684	64671685	chr17:64671685:A:G	rs141479074	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	64750885	64750886	chr17:64750886:T:C	rs114962008	T	C	.	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr17	65054755	65054756	chr17:65054756:G:A	rs3972203	G	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr17	65088686	65088687	chr17:65088687:T:C	rs12936763	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr17	65123762	65123763	chr17:65123763:A:G	rs9899628	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr17	65181876	65181877	chr17:65181877:C:T	rs75088719	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	65358987	65358988	chr17:65358988:T:C	rs73998119	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr17	65407074	65407075	chr17:65407075:G:A	rs2904210	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr17	65456227	65456228	chr17:65456228:A:G	rs189817174	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr17	65479377	65479378	chr17:65479378:A:G	rs78555180	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	65536056	65536057	chr17:65536057:A:G	rs11079570	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr17	65544830	65544831	chr17:65544831:G:A	rs115924219	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr17	65553369	65553370	chr17:65553370:A:C	rs3923086	A	C	A	Sox1.mouse_HMG_2	13	1	+	9.927887349366594	3.6071713402372456	TTAAATAGCATTCAA
chr17	65662750	65662751	chr17:65662751:G:A	rs4791143	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	65885772	65885773	chr17:65885773:G:T	rs4291948	G	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr17	65941593	65941594	chr17:65941594:T:C	rs12943810	T	C	t	Sox1.mouse_HMG_2	1	1	+	7.393842960968631	2.7498506534753995	CTGTATTCCATTCAA
chr17	65961575	65961576	chr17:65961576:G:C	rs77905043	G	C	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr17	65984822	65984823	chr17:65984823:T:C	rs10512508	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr17	66016375	66016376	chr17:66016376:C:T	rs17625947	C	T	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr17	66055727	66055728	chr17:66055728:G:T	rs2319122	G	T	T	Sox1.mouse_HMG_2	11	1	-	3.098966120004635	3.098966120004635	CTGACTTACAGCCAC
chr17	66322804	66322805	chr17:66322805:C:T	rs62069959	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	66424154	66424155	chr17:66424155:C:T	rs16959240	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	66431744	66431745	chr17:66431745:T:C	rs9913908	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr17	66644602	66644603	chr17:66644603:G:A	rs61762400	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	66790567	66790568	chr17:66790568:G:A	rs9913128	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr17	66881704	66881705	chr17:66881705:C:G	rs9909222	C	G	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	66944579	66944580	chr17:66944580:C:A	rs1008366	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	66944612	66944613	chr17:66944613:G:C	rs11652396	G	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	67421930	67421931	chr17:67421931:T:C	rs1042673153	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.524893212268451	-2.3230483660118297	AGGAATAACATTGAG
chr17	67451381	67451382	chr17:67451382:A:G	rs12952713	A	G	G	Sox1.mouse_HMG_2	3	1	+	3.7465159074556933	-3.1622388718595245	ATGAATAAGTTTCAG
chr17	67688736	67688737	chr17:67688737:A:G	rs2642051	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	67713676	67713677	chr17:67713677:C:T	rs8068862	C	T	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr17	67713682	67713683	chr17:67713683:T:C	rs115980562	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	67828311	67828312	chr17:67828312:A:T	rs28601724	A	T	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	67992920	67992921	chr17:67992921:A:G	rs190313223	A	G	A	Sox1.mouse_HMG_2	13	1	+	7.4634950040033505	2.517377316230702	CTAAATCCCATTCAT
chr17	67992931	67992932	chr17:67992932:T:C	rs28368756	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr17	68312787	68312788	chr17:68312788:C:T	rs138391343	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	68312788	68312789	chr17:68312789:G:A	rs117977010	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr17	68388992	68388993	chr17:68388993:G:C	rs72841848	G	C	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	68393371	68393372	chr17:68393372:G:A	rs6501421	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr17	68393402	68393403	chr17:68393403:C:T	rs8064339	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	68515485	68515486	chr17:68515486:G:A	rs3730349	G	A	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr17	68621353	68621354	chr17:68621354:T:G	rs16973129	T	G	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr17	68665366	68665367	chr17:68665367:C:T	rs17673884	C	T	T	Sox1.mouse_HMG_2	10	1	-	6.278241133763257	2.1828970712080737	CTGAATGCCAGTTAA
chr17	68861913	68861914	chr17:68861914:C:T	rs1838101	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr17	68970132	68970133	chr17:68970133:G:A	rs6501919	G	A	a	Sox1.mouse_HMG_2	10	1	+	6.078290915342563	1.9829468527873786	AAGAATATCAGTCTT
chr17	68988287	68988288	chr17:68988288:T:C	rs1541469	T	C	c	Sox1.mouse_HMG_2	13	1	-	4.483120755810226	-0.4629969319624219	ATGAGTACCATTTAG
chr17	69047827	69047828	chr17:69047828:C:T	rs144076840	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr17	69473736	69473737	chr17:69473737:T:C	rs9895446	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr17	69497552	69497553	chr17:69497553:C:T	rs2715819	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr17	69573971	69573972	chr17:69573972:A:G	rs1966327	A	G	G	Sox1.mouse_HMG_2	10	1	-	5.087902408735711	-1.7600391695445707	ATGAATATCTTTTAT
chr17	69581895	69581896	chr17:69581896:A:C	rs16974218	A	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr17	69870524	69870525	chr17:69870525:A:C	rs974654	A	C	A	Sox1.mouse_HMG_2	6	1	-	4.144082326943593	3.544910339816349	ATAAATTGCATTCCC
chr17	69944635	69944636	chr17:69944636:A:G	rs79365584	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	69944638	69944639	chr17:69944639:A:G	rs78036164	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr17	70053651	70053652	chr17:70053652:G:T	rs2215006	G	T	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr17	70073207	70073208	chr17:70073208:T:C	rs8070382	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	70074668	70074669	chr17:70074669:C:G	rs9903462	C	G	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr17	70127277	70127278	chr17:70127278:C:T	rs775760300	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	70239503	70239504	chr17:70239504:C:T	rs11077483	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr17	70304494	70304495	chr17:70304495:C:A	rs312707	C	A	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr17	70314022	70314023	chr17:70314023:A:G	rs17778044	A	G	A	Sox1.mouse_HMG_2	8	1	-	3.033518727287992	8.67794541766998	CTGAATACTATGCAC
chr17	70390196	70390197	chr17:70390197:A:G	rs8065569	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr17	71072707	71072708	chr17:71072708:A:G	rs7208880	A	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	71361998	71361999	chr17:71361999:C:T	rs9896331	C	T	C	Sox1.mouse_HMG_2	9	1	+	3.9927970370378576	3.9927970370378576	TTGAATTAACTTCAT
chr17	71397274	71397275	chr17:71397275:T:C	rs11654061	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.1632844115523975	-2.7454703677628225	TTAAATAACATGCAC
chr17	71657917	71657918	chr17:71657918:G:A	rs79710274	G	A	g	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	71969632	71969633	chr17:71969633:C:T	rs11077588	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr17	72052761	72052762	chr17:72052762:A:G	rs16977050	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr17	72387168	72387169	chr17:72387169:G:A	rs144647651	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr17	72390721	72390722	chr17:72390722:T:G	rs9908785	T	G	G	Sox1.mouse_HMG_2	3	1	-	2.594655346306899	-4.314099433008321	CTCACTGGCATTCTG
chr17	72467851	72467852	chr17:72467852:C:A	rs11653824	C	A	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr17	72516674	72516675	chr17:72516675:C:T	rs8073870	C	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr17	72525319	72525320	chr17:72525320:A:G	rs8074834	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr17	72644686	72644687	chr17:72644687:G:C	rs4072715	G	C	G	Sox1.mouse_HMG_2	8	1	-	8.072006688329928	2.353472025794219	TTGAGTTTCATTCAT
chr17	72729981	72729982	chr17:72729982:C:T	rs7221363	C	T	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr17	72967947	72967948	chr17:72967948:G:A	rs2934226	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	73008705	73008706	chr17:73008706:G:C	rs34736651	G	C	G	Sox1.mouse_HMG_2	7	1	-	1.8901395564912482	1.585769457618242	CTGTGTTCCATTCAT
chr17	73170561	73170562	chr17:73170562:A:G	rs7220818	A	G	A	Sox1.mouse_HMG_2	5	1	-	2.749460765277544	-4.159294014037675	CTGAATTGGACTCAT
chr17	73463785	73463786	chr17:73463786:T:C	rs75718382	T	C	C	Sox1.mouse_HMG_2	1	1	-	2.9144919013703467	2.610020722291772	CAGAATTCCATCCAG
chr17	73474911	73474912	chr17:73474912:C:T	rs11651551	C	T	c	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr17	73549631	73549632	chr17:73549632:G:A	rs55868250	G	A	G	Sox1.mouse_HMG_2	11	1	-	2.8180816898374266	9.726836469152646	CTGACTCCCATCCAT
chr17	73590698	73590699	chr17:73590699:A:G	rs937890	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr17	73738772	73738773	chr17:73738773:T:G	rs34087957	T	G	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr17	73749337	73749338	chr17:73749338:A:G	rs28465234	A	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	73786389	73786390	chr17:73786390:C:T	rs78681041	C	T	A	Sox1.mouse_HMG_2	13	1	-	2.1005365441188366	7.046654231891485	CTGATTGCCATTCGG
chr17	73814342	73814343	chr17:73814343:G:C	rs899587	G	C	G	Sox1.mouse_HMG_2	8	1	+	9.105467961806882	14.824002624342588	GTGAATTTGATTCAT
chr17	73833934	73833935	chr17:73833935:T:C	rs184193494	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr17	74058484	74058485	chr17:74058485:C:T	rs7225721	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr17	74083150	74083151	chr17:74083151:A:G	rs577428434	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.831523646894725	0.18753133940149097	CTGATTATCATTCTG
chr17	74119634	74119635	chr17:74119635:A:G	rs1870247	A	G	G	Sox1.mouse_HMG_2	1	1	-	1.525633740516692	-3.118358566976543	CTGAATAGCTCTCAC
chr17	74212837	74212838	chr17:74212838:A:G	chr17:74212838:A:G	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr17	74250957	74250958	chr17:74250958:G:A	rs9896113	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr17	74267727	74267728	chr17:74267728:A:T	rs7222268	A	T	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr17	74287665	74287666	chr17:74287666:C:T	rs28692188	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr17	74527084	74527085	chr17:74527085:T:C	rs10512596	T	C	C	Sox1.mouse_HMG_2	14	1	-	2.8098855812421766	2.9745268291371243	AGGAAGTGCATTCAA
chr17	74675749	74675750	chr17:74675750:C:T	rs62084864	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr17	74949982	74949983	chr17:74949983:A:G	rs1994720	A	G	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr17	75274077	75274078	chr17:75274078:T:C	rs733301	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.737180972196787	1.0931886647035531	ATTAATTTCATTCTT
chr17	75316190	75316191	chr17:75316191:T:C	rs8081778	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.548333023231167	-3.3604217560840524	AGGACTAGCAGTCTT
chr17	75442915	75442916	chr17:75442916:G:A	chr17:75442916:G:A	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr17	75518308	75518309	chr17:75518309:T:C	rs73362237	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr17	75776390	75776391	chr17:75776391:G:A	rs79695954	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr17	75776416	75776417	chr17:75776417:T:C	rs762633876	T	C	T	Sox1.mouse_HMG_2	11	1	+	2.167917198856969	-4.740837580458251	ATGAAAACCATTGAG
chr17	75780104	75780105	chr17:75780105:T:C	rs73352125	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr17	75780194	75780195	chr17:75780195:G:A	chr17:75780195:G:A	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr17	76166356	76166357	chr17:76166357:A:C	rs113057529	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr17	76188234	76188235	chr17:76188235:C:G	rs143655955	C	G	C	Sox1.mouse_HMG_2	14	1	+	2.3218400556545946	2.043384281589592	GTGACTTACGTTCTC
chr17	76230378	76230379	chr17:76230379:T:C	rs8074389	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.837684319532254	-1.0710704597829652	ATGACTGACATTTTT
chr17	76252539	76252540	chr17:76252540:A:G	rs73350331	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr17	76304213	76304214	chr17:76304214:C:T	rs346790	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr17	76304234	76304235	chr17:76304235:A:T	rs73996305	A	T	A	Sox1.mouse_HMG_2	10	1	-	9.613882454143942	2.7659408758636603	GTGAATAACATGCAT
chr17	76331360	76331361	chr17:76331361:C:T	rs57032897	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	76469160	76469161	chr17:76469161:C:G	rs72466445	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr17	76563055	76563056	chr17:76563056:T:C	rs548104046	T	C	t	Sox1.mouse_HMG_2	3	1	+	3.18377381794632	3.18377381794632	TTATATAGCATTCAG
chr17	76572328	76572329	chr17:76572329:T:C	rs8076505	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr17	76632233	76632234	chr17:76632234:A:G	rs75391478	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr17	76858302	76858303	chr17:76858303:C:T	rs181181555	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr17	77018064	77018065	chr17:77018065:T:C	rs72880096	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr17	77089571	77089572	chr17:77089572:A:G	rs16969661	A	G	A	Sox1.mouse_HMG_2	0	1	+	5.219713645112963	4.215477412477761	ATGTCTTTCATTCAA
chr17	77165095	77165096	chr17:77165096:A:T	rs55720361	A	T	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr17	77411243	77411244	chr17:77411244:A:G	rs539495930	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	77441988	77441989	chr17:77441989:G:A	rs142713022	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr17	77513604	77513605	chr17:77513605:C:T	rs312810	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr17	77520728	77520729	chr17:77520729:C:T	rs4789457	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr17	77524663	77524664	chr17:77524664:G:A	rs11656736	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr17	77581294	77581295	chr17:77581295:T:C	rs2411131	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.6669213852605496	-0.9770709222326824	GTGAACAACAGTCTT
chr17	77607354	77607355	chr17:77607355:T:C	rs60124003	T	C	C	Sox1.mouse_HMG_2	10	1	+	3.4609593461672894	-3.3869822321129917	TTGAATACCATGTAG
chr17	77764504	77764505	chr17:77764505:T:C	rs7214910	T	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr17	77835333	77835334	chr17:77835334:T:C	rs117915028	T	C	T	Sox1.mouse_HMG_2	8	1	-	2.987443167416484	2.118405320392874	CTGAAGTCAATTCAC
chr17	77842029	77842030	chr17:77842030:A:G	rs7406431	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr17	77960460	77960461	chr17:77960461:C:T	rs9912734	C	T	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr17	77999788	77999789	chr17:77999789:G:A	rs111785706	G	A	G	Sox1.mouse_HMG_2	5	1	-	2.3753548420098793	9.2841096213251	AGGAACGGCATTCAG
chr17	78200531	78200532	chr17:78200532:T:C	rs77336916	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.163132836747014	-3.658279932413058	GTCAATGGCATTTAG
chr17	78272969	78272970	chr17:78272970:T:C	rs9896784	T	C	T	Sox1.mouse_HMG_2	5	1	+	2.2894055894350993	-4.61934918988012	CCGAATGGCGTTCAC
chr17	78315909	78315910	chr17:78315910:T:G	rs4789580	T	G	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr17	78315921	78315922	chr17:78315922:C:G	rs76184408	C	G	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr17	78315922	78315923	chr17:78315923:G:C	rs148711263	G	C	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr17	78390677	78390678	chr17:78390678:C:G	rs139447178	C	G	C	Sox1.mouse_HMG_2	4	1	+	3.7767594295788482	-0.6625922717143017	AGGACTAGGATTCAT
chr17	78529965	78529966	chr17:78529966:G:A	rs62075885	G	A	G	Sox1.mouse_HMG_2	12	1	-	2.6123665210909333	-2.060220582577322	CTGAATTCCATCCGG
chr17	78620464	78620465	chr17:78620465:T:C	rs4796798	T	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr17	78682857	78682858	chr17:78682858:T:C	rs9895721	T	C	T	Sox1.mouse_HMG_2	13	1	-	2.643802981077495	-2.3023147066951535	CTGAATACCCTGCAT
chr17	78916307	78916308	chr17:78916308:C:T	rs149309061	C	T	C	Sox1.mouse_HMG_2	1	1	-	3.1065327241355756	3.4110039032141493	GGAACTGACATTCAT
chr17	79035758	79035759	chr17:79035759:T:A	rs71385995	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr17	79097685	79097686	chr17:79097686:T:C	rs58352742	T	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr17	79482000	79482001	chr17:79482001:C:G	rs79272600	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr17	79789230	79789231	chr17:79789231:T:G	rs57803760	T	G	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr17	80187865	80187866	chr17:80187866:G:C	chr17:80187866:G:C	G	C	g	Sox1.mouse_HMG_2	12	1	-	5.5679035587860515	-1.3325450916803117	TTGACTTGCAGTCTG
chr17	80439628	80439629	chr17:80439629:A:G	rs4318264	A	G	G	Sox1.mouse_HMG_2	13	1	+	1.9160541721700466	-3.0300635156026017	ATGAATAGCACGCAG
chr17	80648134	80648135	chr17:80648135:T:C	rs190972123	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	80721326	80721327	chr17:80721327:C:T	rs2315922	C	T	c	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr17	80836443	80836444	chr17:80836444:C:T	rs555374012	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr17	80846059	80846060	chr17:80846060:T:C	rs79582711	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr17	80968878	80968879	chr17:80968879:T:C	rs9898301	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr17	80968910	80968911	chr17:80968911:C:T	rs61142276	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr17	80968911	80968912	chr17:80968912:G:C	rs151253282	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr17	80968916	80968917	chr17:80968917:G:T	rs546573052	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr17	81313456	81313457	chr17:81313457:C:G	rs7219477	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr17	81327033	81327034	chr17:81327034:G:A	rs115164403	G	A	g	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr17	81384877	81384878	chr17:81384878:A:G	rs7218794	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr17	82114172	82114173	chr17:82114173:A:G	rs11867806	A	G	A	Sox1.mouse_HMG_2	1	1	-	2.513853268472811	-2.130139039020421	GTGAAGAACAGTCTG
chr17	82436411	82436412	chr17:82436412:C:T	rs28689115	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr17	82519116	82519117	chr17:82519117:G:C	rs76797925	G	C	-	Sox1.mouse_HMG_2	8	1	-	6.958382811296647	1.2398481487609383	CTGAATCACATTTAC
chr17	82574655	82574656	chr17:82574656:C:T	rs7215465	C	T	c	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr17	82902374	82902375	chr17:82902375:G:T	rs7212980	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr17	82943159	82943160	chr17:82943160:C:G	rs8180	C	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr17	83011493	83011494	chr17:83011494:G:A	rs7405903	G	A	g	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr17	83028984	83028985	chr17:83028985:G:A	rs34614760	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr17	83092241	83092242	chr17:83092242:G:A	rs149237720	G	A	c	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr17	83105941	83105942	chr17:83105942:C:T	rs28459602	C	T	T	Sox1.mouse_HMG_2	7	1	-	2.5328225647575415	3.2338773842986175	CAGATTTGCATTCAA
chr18	286037	286038	chr18:286038:G:C	rs62073534	G	C	G	Sox1.mouse_HMG_2	6	1	-	4.730904254974278	7.643141835794005	CTCACTCACATTCAT
chr18	316557	316558	chr18:316558:C:T	rs621638	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr18	322108	322109	chr18:322109:A:G	rs7236292	A	G	G	Sox1.mouse_HMG_2	6	1	+	6.106045768938162	4.665868347069526	ATGAATAACTTTCTA
chr18	385139	385140	chr18:385140:T:C	rs4621053	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr18	408054	408055	chr18:408055:T:G	rs75904203	T	G	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr18	427070	427071	chr18:427071:C:T	rs77645528	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.8375108186970515	1.1930841283150642	CTGACTAACATTCCA
chr18	581362	581363	chr18:581363:G:C	rs113711943	G	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr18	1003084	1003085	chr18:1003085:A:T	rs789060	A	T	A	Sox1.mouse_HMG_2	14	1	-	3.7617796937620964	2.4440703290794104	CTAAATTGCATGCAT
chr18	1395597	1395598	chr18:1395598:A:G	rs8085633	A	G	G	Sox1.mouse_HMG_2	14	1	-	5.868546804077291	4.993934461354555	CTGGCTTTCATTCAT
chr18	1408485	1408486	chr18:1408486:T:C	rs141789040	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr18	1528512	1528513	chr18:1528513:A:G	rs17383211	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr18	2096767	2096768	chr18:2096768:A:G	rs11662013	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr18	2325495	2325496	chr18:2325496:T:C	rs551683219	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr18	2402330	2402331	chr18:2402331:C:T	rs7238391	C	T	T	Sox1.mouse_HMG_2	2	1	-	2.87486304734519	-1.7705394856710268	CTGATTTACATTCCT
chr18	2410239	2410240	chr18:2410240:A:G	rs77705611	A	G	A	Sox1.mouse_HMG_2	14	1	+	5.136772019505561	5.301413267400509	TTAAATGTCATTCTA
chr18	2534978	2534979	chr18:2534979:C:A	rs150111946	C	A	C	Sox1.mouse_HMG_2	14	1	-	5.3625055508690895	6.515573667656828	TTGAATTCTATTCTG
chr18	2565785	2565786	chr18:2565786:T:C	rs115660784	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr18	2795657	2795658	chr18:2795658:C:T	rs2298497	C	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr18	2987039	2987040	chr18:2987040:C:T	rs650543	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr18	3067062	3067063	chr18:3067063:A:C	rs79987844	A	C	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr18	3149312	3149313	chr18:3149313:T:C	rs80138448	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr18	3281548	3281549	chr18:3281549:A:G	rs111512921	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr18	3281550	3281551	chr18:3281551:T:C	rs535439269	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr18	3281569	3281570	chr18:3281570:A:G	rs118046618	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.327299980403171	-3.520641597877109	ATGACAACCATTCTA
chr18	3321148	3321149	chr18:3321149:A:G	rs1662290	A	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr18	3381665	3381666	chr18:3381666:T:A	rs7245137	T	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr18	3447962	3447963	chr18:3447963:A:G	rs80144693	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr18	3456088	3456089	chr18:3456089:A:T	rs74669006	A	T	A	Sox1.mouse_HMG_2	9	1	+	5.391842874136	-1.5169119051792204	CTGACCATCATTCAA
chr18	3512428	3512429	chr18:3512429:T:C	rs3786453	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr18	3512443	3512444	chr18:3512444:C:A	rs3786452	C	A	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr18	3528493	3528494	chr18:3528494:G:A	rs603464	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr18	3600187	3600188	chr18:3600188:A:G	rs548849	A	G	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr18	3605327	3605328	chr18:3605328:A:T	rs558020848	A	T	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr18	4106559	4106560	chr18:4106560:A:G	rs7504530	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr18	4444194	4444195	chr18:4444195:G:A	rs12604562	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr18	4692167	4692168	chr18:4692168:C:T	rs185438106	C	T	c	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr18	4805700	4805701	chr18:4805701:T:G	rs35384609	T	G	G	Sox1.mouse_HMG_2	5	1	+	11.019605526067766	4.110850746752547	GTAAATATCATTCAT
chr18	5073302	5073303	chr18:5073303:A:T	rs111500659	A	T	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr18	5500021	5500022	chr18:5500022:T:C	rs9960603	T	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr18	5527920	5527921	chr18:5527921:A:C	rs1719955	A	C	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr18	5527922	5527923	chr18:5527923:G:A	rs1618179	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr18	5539738	5539739	chr18:5539739:C:T	rs1719971	C	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr18	5772876	5772877	chr18:5772877:G:C	rs75037883	G	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr18	6056888	6056889	chr18:6056889:A:C	rs1784816	A	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr18	6135085	6135086	chr18:6135086:C:T	rs780549103	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr18	6200443	6200444	chr18:6200444:C:T	rs536927859	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr18	6396240	6396241	chr18:6396241:T:C	rs341231	T	C	.	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr18	6624790	6624791	chr18:6624791:G:A	rs73938215	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr18	6740785	6740786	chr18:6740786:T:C	rs8084747	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr18	6951935	6951936	chr18:6951936:G:A	rs77509931	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.541768965996077	-0.10363356702014143	GCGAATTCCATTCGG
chr18	7146477	7146478	chr18:7146478:T:C	rs76571661	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr18	7440891	7440892	chr18:7440892:T:A	rs524824	T	A	A	Sox1.mouse_HMG_2	9	1	-	3.9466775487609453	-2.9620772305542746	CTGAAAAAAATTCAG
chr18	7483013	7483014	chr18:7483014:C:G	rs68108042	C	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr18	7750491	7750492	chr18:7750492:C:T	rs370617366	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr18	8050887	8050888	chr18:8050888:A:G	rs649598	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr18	8340624	8340625	chr18:8340625:A:G	rs598149	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr18	8382147	8382148	chr18:8382148:A:G	rs78426883	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr18	8408881	8408882	chr18:8408882:C:T	rs584703	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr18	8459153	8459154	chr18:8459154:C:T	rs584303	C	T	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr18	8501322	8501323	chr18:8501323:T:C	rs28721002	T	C	T	Sox1.mouse_HMG_2	4	1	+	3.550981827689453	7.990333528982604	TCGATTAGCATTCAC
chr18	8593919	8593920	chr18:8593920:T:G	rs11665618	T	G	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr18	8772316	8772317	chr18:8772317:C:T	rs775286	C	T	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	8858087	8858088	chr18:8858088:G:A	rs625719	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr18	8909042	8909043	chr18:8909043:A:G	rs13381129	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.642187876241294	-1.3039298115313542	TTGAAAACTATTCAT
chr18	8944904	8944905	chr18:8944905:A:G	rs2062014	A	G	A	Sox1.mouse_HMG_2	3	1	+	5.735365130775591	-1.1733896485396278	TTCAATGCCAGTCAC
chr18	8944933	8944934	chr18:8944934:G:A	rs73941716	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr18	8976686	8976687	chr18:8976687:G:A	rs12150726	G	A	G	Sox1.mouse_HMG_2	7	1	-	4.551309598740018	4.090365145032912	ATGAAACCCATTCAA
chr18	8979590	8979591	chr18:8979591:A:G	rs11081449	A	G	A	Sox1.mouse_HMG_2	6	1	+	5.631306559757884	4.191129137889242	TTGAATATCTTTCTT
chr18	9096994	9096995	chr18:9096995:A:G	rs11872404	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr18	9410834	9410835	chr18:9410835:G:A	rs8085860	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr18	9516578	9516579	chr18:9516579:C:A	rs36064377	C	A	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr18	9551360	9551361	chr18:9551361:G:T	rs329008	G	T	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr18	9609298	9609299	chr18:9609299:C:T	rs627112	C	T	T	Sox1.mouse_HMG_2	14	1	+	4.761818547726166	5.636430890448902	CTAAATATGATTCAC
chr18	9643720	9643721	chr18:9643721:T:G	chr18:9643721:T:G	T	G	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr18	9643750	9643751	chr18:9643751:G:A	rs683278	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr18	9683419	9683420	chr18:9683420:T:C	rs77433960	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr18	9756058	9756059	chr18:9756059:A:G	rs8099036	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr18	9775364	9775365	chr18:9775365:C:T	rs149779563	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr18	9835386	9835387	chr18:9835387:C:G	rs76820168	C	G	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr18	9854979	9854980	chr18:9854980:G:A	rs62078774	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr18	9907864	9907865	chr18:9907865:A:G	rs12456438	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr18	10174229	10174230	chr18:10174230:T:C	rs11659284	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr18	10222096	10222097	chr18:10222097:A:G	rs55673825	A	G	g	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	10296334	10296335	chr18:10296335:A:G	rs206472	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr18	10413585	10413586	chr18:10413586:G:T	rs72975480	G	T	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr18	10492025	10492026	chr18:10492026:C:A	rs10502395	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr18	10525587	10525588	chr18:10525588:A:G	rs512710	A	G	G	Sox1.mouse_HMG_2	13	1	+	4.543351432873105	-0.40276625489954376	TTGACTGACATACAA
chr18	10757869	10757870	chr18:10757870:A:G	rs7242408	A	G	a	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr18	11034957	11034958	chr18:11034958:A:T	rs9954104	A	T	A	Sox1.mouse_HMG_2	9	1	+	1.824653638144318	-5.084101141170902	CTGACTGCCAGACAG
chr18	11383675	11383676	chr18:11383676:G:A	rs76049855	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr18	11388997	11388998	chr18:11388998:C:T	rs73943283	C	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr18	11573031	11573032	chr18:11573032:A:G	rs9960005	A	G	.	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	11667181	11667182	chr18:11667182:T:C	rs113370802	T	C	T	Sox1.mouse_HMG_2	4	1	-	7.4168101434393465	0.5953973742792729	CTGAATGACAATCAG
chr18	11667191	11667192	chr18:11667192:C:A	rs16976591	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr18	11857066	11857067	chr18:11857067:T:C	rs7241199	T	C	T	Sox1.mouse_HMG_2	4	1	-	10.010071617649887	3.1886588484898146	CTGAATATCATTTAA
chr18	11992665	11992666	chr18:11992666:T:C	rs59552380	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr18	12078224	12078225	chr18:12078225:C:T	rs4636985	C	T	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr18	12404964	12404965	chr18:12404965:T:C	rs75484433	T	C	T	Sox1.mouse_HMG_2	7	1	-	4.0567977739171015	3.355742954376025	GTGATTAATATTCAT
chr18	12526118	12526119	chr18:12526119:G:A	rs74856566	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.460578569705037	-2.183848120676949	CTGAATGGCTTTCTG
chr18	12755581	12755582	chr18:12755582:C:A	rs1833325	C	A	C	Sox1.mouse_HMG_2	2	1	-	3.1953805907509167	-3.7013137408717953	AAGACTACCATCCAT
chr18	12786059	12786060	chr18:12786060:G:A	rs8092305	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr18	12791817	12791818	chr18:12791818:C:T	rs114577437	C	T	C	Sox1.mouse_HMG_2	6	1	+	4.4115807477619615	7.922990315708933	ATGAAGCGCATTCAG
chr18	13017672	13017673	chr18:13017673:A:G	rs74675149	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr18	13133577	13133578	chr18:13133578:G:A	rs550315	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr18	13279246	13279247	chr18:13279247:C:T	rs58185991	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr18	13280264	13280265	chr18:13280265:G:A	rs77584751	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr18	13559348	13559349	chr18:13559349:C:A	rs10853237	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr18	13611439	13611440	chr18:13611440:C:T	rs75829566	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr18	13642721	13642722	chr18:13642722:T:C	rs12326169	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr18	13801390	13801391	chr18:13801391:C:T	rs4580262	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr18	14913292	14913293	chr18:14913293:A:G	rs786006	A	G	.	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr18	14917153	14917154	chr18:14917154:G:A	rs2139097	G	A	.	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr18	14917169	14917170	chr18:14917170:T:C	rs1518582	T	C	.	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr18	21304204	21304205	chr18:21304205:C:T	rs77193336	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr18	21803491	21803492	chr18:21803492:G:A	rs68171388	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr18	21820187	21820188	chr18:21820188:A:G	rs45546634	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr18	22282632	22282633	chr18:22282633:G:A	rs189605377	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.470171549909298	-1.1742551404726895	TTGAATAGCGTTCTA
chr18	22552087	22552088	chr18:22552088:C:T	rs74987270	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr18	22668324	22668325	chr18:22668325:T:C	rs2222394	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr18	22681675	22681676	chr18:22681676:C:T	rs11664030	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr18	22724120	22724121	chr18:22724121:G:A	rs299242	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr18	23142673	23142674	chr18:23142674:G:A	rs80006503	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr18	23236719	23236720	chr18:23236720:C:T	rs1966656	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr18	23258071	23258072	chr18:23258072:A:G	rs78479391	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.609822772734145	-3.2989320065810745	ATGACTGACATTGTT
chr18	23521491	23521492	chr18:23521492:C:A	rs6507708	C	A	C	Sox1.mouse_HMG_2	14	1	+	4.124725398703958	3.6816283767440074	GGGACTGACAGTCAC
chr18	23567544	23567545	chr18:23567545:C:T	rs1652348	C	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr18	23591180	23591181	chr18:23591181:G:A	rs4598991	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr18	23703386	23703387	chr18:23703387:C:T	rs149877496	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr18	23969939	23969940	chr18:23969940:T:C	rs9958904	T	C	C	Sox1.mouse_HMG_2	1	1	+	4.090365145032913	-0.5536271624603198	ATGCATCTCATTCAA
chr18	23994559	23994560	chr18:23994560:C:T	rs77548840	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr18	23994592	23994593	chr18:23994593:C:T	rs75878286	C	T	C	Sox1.mouse_HMG_2	0	1	-	3.5060690938270627	4.510305326462266	GTAAGTACCATTCAG
chr18	23994593	23994594	chr18:23994594:G:A	rs79221341	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr18	24011057	24011058	chr18:24011058:C:T	rs16940430	C	T	c	Sox1.mouse_HMG_2	13	1	-	4.703399340732982	9.649517028505631	TGGAATTACATTCGG
chr18	24102335	24102336	chr18:24102336:C:T	rs16940484	C	T	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr18	24112379	24112380	chr18:24112380:T:C	rs1565083	T	C	C	Sox1.mouse_HMG_2	7	1	-	4.495259427949881	3.794204608408805	TTGACTAATAGTCAA
chr18	24213028	24213029	chr18:24213029:T:C	rs146220553	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	24213040	24213041	chr18:24213041:T:C	chr18:24213041:T:C	T	C	T	Sox1.mouse_HMG_2	10	1	+	6.02971114040003	-0.8182304378802505	CAGAATGCCATTCTG
chr18	24500128	24500129	chr18:24500129:T:A	rs637702	T	A	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr18	24527050	24527051	chr18:24527051:G:A	rs12605485	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr18	24589459	24589460	chr18:24589460:T:C	rs9304469	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.106483590784713	-2.7414579874955685	TTGAATTCCATTGTG
chr18	24657238	24657239	chr18:24657239:C:A	rs7230575	C	A	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr18	25171793	25171794	chr18:25171794:A:G	rs10853651	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr18	25209503	25209504	chr18:25209504:T:G	rs12456914	T	G	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr18	25288809	25288810	chr18:25288810:G:C	chr18:25288810:G:C	G	C	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr18	25360429	25360430	chr18:25360430:C:T	rs35391346	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr18	25676255	25676256	chr18:25676256:T:A	rs1378329	T	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	25883249	25883250	chr18:25883250:T:C	rs758939750	T	C	T	Sox1.mouse_HMG_2	0	1	+	4.727991267585122	4.993934461354555	TTGACATTCATTCAC
chr18	25998561	25998562	chr18:25998562:C:A	rs4800711	C	A	C	Sox1.mouse_HMG_2	7	1	-	3.460578569705037	3.304004214870938	CTGAATGGCATCCTG
chr18	26058370	26058371	chr18:26058371:T:C	rs898184	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr18	26074609	26074610	chr18:26074610:G:T	rs12964037	G	T	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr18	26183463	26183464	chr18:26183464:T:C	rs114517867	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	26419946	26419947	chr18:26419947:G:C	rs16942300	G	C	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr18	26448910	26448911	chr18:26448911:C:T	rs140025149	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr18	26513834	26513835	chr18:26513835:A:G	rs9960543	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr18	26541849	26541850	chr18:26541850:T:C	rs7238458	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr18	26937482	26937483	chr18:26937483:T:G	rs16942983	T	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr18	27058150	27058151	chr18:27058151:G:A	rs1485807	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.479049262063785	-2.1653774283182026	AAGACTAGCATTCCT
chr18	27198252	27198253	chr18:27198253:A:G	rs41407148	A	G	A	Sox1.mouse_HMG_2	3	1	+	7.113939669076775	0.2051848897615537	AAGAATTTCAGTCAA
chr18	27339338	27339339	chr18:27339339:A:G	rs1474134	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr18	27501923	27501924	chr18:27501924:G:A	rs1940989	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr18	27583138	27583139	chr18:27583139:C:G	rs150197842	C	G	C	Sox1.mouse_HMG_2	8	1	+	6.972282419325697	1.2537477567899873	CTGAATAGCATTTTA
chr18	27583143	27583144	chr18:27583144:T:C	chr18:27583144:T:C	T	C	T	Sox1.mouse_HMG_2	13	1	+	6.972282419325697	3.845929963354642	CTGAATAGCATTTTA
chr18	27583156	27583157	chr18:27583157:G:A	rs117355028	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr18	27620433	27620434	chr18:27620434:A:T	rs13381024	A	T	T	Sox1.mouse_HMG_2	10	1	-	4.987490755855631	-1.860450822424649	TGAAATATCATTCAG
chr18	27812727	27812728	chr18:27812728:A:C	rs188925242	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr18	28018501	28018502	chr18:28018502:C:G	rs17445861	C	G	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr18	28028132	28028133	chr18:28028133:T:C	rs505314	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr18	28124797	28124798	chr18:28124798:G:C	rs2155766	G	C	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr18	28124800	28124801	chr18:28124801:C:T	rs8089347	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr18	28305125	28305126	chr18:28305126:G:A	rs17470481	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.104729136394272	-0.5678579672739833	GTGAATGACATGCTC
chr18	28855021	28855022	chr18:28855022:G:C	rs577218	G	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr18	28909220	28909221	chr18:28909221:G:A	rs145301617	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr18	28963194	28963195	chr18:28963195:C:T	rs10163952	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr18	28993249	28993250	chr18:28993250:A:G	rs9304530	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr18	29083442	29083443	chr18:29083443:C:T	rs10164187	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr18	29147910	29147911	chr18:29147911:T:G	rs1990800	T	G	T	Sox1.mouse_HMG_2	10	1	+	7.09185487200018	4.339257356275082	ATGACTATCATTCCC
chr18	29155445	29155446	chr18:29155446:G:A	rs11083324	G	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr18	29161656	29161657	chr18:29161657:G:A	rs73952247	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr18	29383341	29383342	chr18:29383342:A:G	rs12455267	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr18	29653920	29653921	chr18:29653921:T:C	rs1492811	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr18	29765009	29765010	chr18:29765010:A:G	rs9945072	A	G	a	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr18	29917122	29917123	chr18:29917123:G:A	rs193245902	G	A	G	Sox1.mouse_HMG_2	0	1	-	3.1159492883521938	2.850006094582761	CTGCCTTTCAGTCAT
chr18	30000110	30000111	chr18:30000111:C:G	chr18:30000111:C:G	C	G	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr18	30000115	30000116	chr18:30000116:A:G	chr18:30000116:A:G	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	30191365	30191366	chr18:30191366:A:T	rs9950484	A	T	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr18	30440574	30440575	chr18:30440575:C:T	rs58106920	C	T	C	Sox1.mouse_HMG_2	13	1	+	2.9274716523903606	6.0538241083614155	CTGCATAGCATTCCT
chr18	30694987	30694988	chr18:30694988:G:A	rs117812754	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr18	30694992	30694993	chr18:30694993:A:T	rs2212960	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr18	30889959	30889960	chr18:30889960:T:G	rs116105611	T	G	T	Sox1.mouse_HMG_2	9	1	-	4.059750556832283	-2.849004222482938	CTGAAATGCATTCTG
chr18	31389044	31389045	chr18:31389045:C:T	rs16959863	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr18	31398348	31398349	chr18:31398349:C:T	rs7229349	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr18	31679624	31679625	chr18:31679625:G:A	rs116688005	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr18	31794219	31794220	chr18:31794220:C:T	rs638252	C	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr18	32057236	32057237	chr18:32057237:T:C	rs170861	T	C	T	Sox1.mouse_HMG_2	14	1	-	9.300409322096458	9.465050569991405	ATGGATAACATTCAA
chr18	32429795	32429796	chr18:32429796:A:G	rs10468904	A	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr18	32532921	32532922	chr18:32532922:C:G	rs12457401	C	G	c	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr18	32549535	32549536	chr18:32549536:C:T	rs17737284	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	32582756	32582757	chr18:32582757:A:G	rs73425650	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.520346901017573	-2.3884078782976466	GTGACTGCCTTTCAC
chr18	32582775	32582776	chr18:32582776:A:G	rs150343784	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr18	32595644	32595645	chr18:32595645:A:G	rs9635884	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr18	32608806	32608807	chr18:32608807:G:A	rs73409207	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr18	32730416	32730417	chr18:32730417:G:T	rs7235638	G	T	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr18	33706515	33706516	chr18:33706516:G:A	rs12455788	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr18	34077720	34077721	chr18:34077721:A:G	rs74641960	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr18	34401585	34401586	chr18:34401586:G:A	rs35651788	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr18	34592964	34592965	chr18:34592965:C:T	rs556383246	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr18	34649554	34649555	chr18:34649555:G:C	rs1240976	G	C	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr18	34738730	34738731	chr18:34738731:T:G	rs1480429	T	G	T	Sox1.mouse_HMG_2	13	1	+	3.6415186513147173	1.8897645167003616	AGGAATGCCAGTCTG
chr18	34738731	34738732	chr18:34738732:G:A	rs1480428	G	A	A	Sox1.mouse_HMG_2	14	1	+	3.6415186513147173	3.4768774034197696	AGGAATGCCAGTCTG
chr18	34894114	34894115	chr18:34894115:C:T	rs2422206	C	T	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr18	34913788	34913789	chr18:34913789:C:T	rs8083966	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr18	35241439	35241440	chr18:35241440:G:A	rs1476750748	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr18	35241485	35241486	chr18:35241486:A:G	rs187426770	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr18	35497397	35497398	chr18:35497398:A:C	rs76110714	A	C	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr18	35500231	35500232	chr18:35500232:A:G	rs8095070	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr18	35617050	35617051	chr18:35617051:A:G	rs187282929	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr18	35617059	35617060	chr18:35617060:G:A	rs143091002	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr18	35617081	35617082	chr18:35617082:G:A	rs16966897	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr18	36072539	36072540	chr18:36072540:T:C	rs10153342	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr18	36537349	36537350	chr18:36537350:T:G	rs1015694329	T	G	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr18	36625421	36625422	chr18:36625422:A:G	rs2644253	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr18	36625451	36625452	chr18:36625452:T:C	rs59051454	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr18	36634971	36634972	chr18:36634972:A:G	rs116782360	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr18	36635010	36635011	chr18:36635011:T:G	rs983883	T	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr18	36690230	36690231	chr18:36690231:A:G	rs500559	A	G	G	Sox1.mouse_HMG_2	9	1	+	5.983528854741744	-0.925225924573477	TTGACAAACATTCAA
chr18	36825659	36825660	chr18:36825660:G:A	rs1246335	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr18	37298446	37298447	chr18:37298447:C:T	rs7234413	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr18	37487532	37487533	chr18:37487533:T:C	rs192245249	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.034227345576795	-1.7871854235832765	ATCAATAACAGTCTG
chr18	37487565	37487566	chr18:37487566:C:T	rs7238538	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.01139823472523	0.36697154434324303	ATGAATAGCGGTCAG
chr18	37487580	37487581	chr18:37487581:G:A	rs1557416	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr18	37530111	37530112	chr18:37530112:T:C	rs150609298	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr18	37717092	37717093	chr18:37717093:C:T	rs930026	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr18	38185562	38185563	chr18:38185563:T:C	rs17552090	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr18	38368478	38368479	chr18:38368479:A:G	rs28478521	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr18	38430502	38430503	chr18:38430503:T:C	rs12456426	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr18	38645257	38645258	chr18:38645258:G:A	rs79897691	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr18	38861497	38861498	chr18:38861498:C:T	rs4318278	C	T	T	Sox1.mouse_HMG_2	5	1	-	4.10028991573429	4.10028991573429	GTGAAGTACATTTAT
chr18	39494737	39494738	chr18:39494738:A:G	rs1791238	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr18	39990724	39990725	chr18:39990725:A:C	rs79009099	A	C	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr18	40209069	40209070	chr18:40209070:T:C	rs9947293	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr18	40763286	40763287	chr18:40763287:G:A	rs324321	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.043282681318485	-0.62930442234977	ATGACTGACAGGCAT
chr18	40985034	40985035	chr18:40985035:A:T	rs73949942	A	T	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	40985050	40985051	chr18:40985051:T:C	chr18:40985051:T:C	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.361872187735789	4.487259845013052	GTGAATTGCATTTGT
chr18	41004644	41004645	chr18:41004645:T:C	rs62082410	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.242116491173508	2.801939069304869	CTGAAAATAATTCAT
chr18	41153978	41153979	chr18:41153979:G:T	rs184724725	G	T	.	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr18	41153997	41153998	chr18:41153998:G:T	rs10502752	G	T	.	Sox1.mouse_HMG_2	2	1	+	3.6372330082287494	-3.259461323393963	TTGAATTTCATCCTG
chr18	41280457	41280458	chr18:41280458:C:T	rs77199499	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr18	41407013	41407014	chr18:41407014:T:C	rs8085690	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr18	41521454	41521455	chr18:41521455:A:G	rs2848758	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr18	41702908	41702909	chr18:41702909:T:A	rs9304252	T	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr18	43081819	43081820	chr18:43081820:A:C	rs28550022	A	C	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	43170769	43170770	chr18:43170770:C:G	rs28505507	C	G	C	Sox1.mouse_HMG_2	14	1	+	3.8975110504230894	3.619055276358087	CTGACTGCCATTTTC
chr18	43460109	43460110	chr18:43460110:C:A	rs8087565	C	A	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr18	43701497	43701498	chr18:43701498:G:T	rs146669562	G	T	G	Sox1.mouse_HMG_2	8	1	-	3.185082963263734	-1.6644138522483636	TGGAACACCATTCAG
chr18	43751162	43751163	chr18:43751163:A:C	rs4514760	A	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr18	43819706	43819707	chr18:43819707:G:C	rs1350720	G	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr18	43868573	43868574	chr18:43868574:T:C	rs8096291	T	C	T	Sox1.mouse_HMG_2	10	1	+	14.264751721719627	7.4168101434393465	CTGAATGACATTCAG
chr18	43931705	43931706	chr18:43931706:G:A	rs11876994	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr18	44290926	44290927	chr18:44290927:G:A	rs7237160	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	44731736	44731737	chr18:44731737:T:C	rs148851173	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr18	44864275	44864276	chr18:44864276:G:A	rs654269	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr18	44920630	44920631	chr18:44920631:A:G	rs7244881	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr18	45016823	45016824	chr18:45016824:C:T	rs11874246	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr18	45432040	45432041	chr18:45432041:G:A	rs28734473	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr18	45480419	45480420	chr18:45480420:G:A	rs1549045	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr18	46042833	46042834	chr18:46042834:T:C	rs4890617	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr18	46064809	46064810	chr18:46064810:T:C	rs111730136	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr18	46165284	46165285	chr18:46165285:C:T	rs148078727	C	T	C	Sox1.mouse_HMG_2	9	1	-	5.377698449948205	12.286453229263426	GTGACTAGCGTTCAG
chr18	46704220	46704221	chr18:46704221:A:G	rs4890684	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr18	47283524	47283525	chr18:47283525:A:G	rs10502881	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr18	47345834	47345835	chr18:47345835:A:G	rs16951627	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr18	47441418	47441419	chr18:47441419:A:C	rs1434497	A	C	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr18	47457550	47457551	chr18:47457551:T:C	rs7235819	T	C	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr18	47561804	47561805	chr18:47561805:C:T	rs11664035	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr18	47601909	47601910	chr18:47601910:G:A	rs117911202	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr18	47685567	47685568	chr18:47685568:G:C	rs4939856	G	C	t	Sox1.mouse_HMG_2	13	1	-	3.674167682583585	5.048766003940284	GTGAATCTCATTCCA
chr18	47817136	47817137	chr18:47817137:C:T	rs76639817	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr18	47846564	47846565	chr18:47846565:G:A	rs57673669	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr18	48023996	48023997	chr18:48023997:C:T	rs77217932	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.4562719418802486	-1.188154748501738	TTGAATCACGTTCAC
chr18	48024008	48024009	chr18:48024009:A:G	rs7230700	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr18	48125347	48125348	chr18:48125348:A:G	rs142357891	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr18	48130275	48130276	chr18:48130276:A:T	rs9948682	A	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr18	48289045	48289046	chr18:48289046:A:G	rs1944582	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr18	48328679	48328680	chr18:48328680:C:T	rs1000011	C	T	c	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr18	48328702	48328703	chr18:48328703:T:A	rs113044827	T	A	T	Sox1.mouse_HMG_2	13	1	+	4.176560120937327	7.37092367409562	CTGACTCACAGTCTT
chr18	48472147	48472148	chr18:48472148:T:C	rs9956450	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr18	48529958	48529959	chr18:48529959:C:A	rs138587779	C	A	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr18	48574030	48574031	chr18:48574031:A:T	rs11873436	A	T	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr18	48590863	48590864	chr18:48590864:C:A	rs111757627	C	A	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr18	48627934	48627935	chr18:48627935:A:G	rs12958957	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.4497170117157525	-3.459037767599466	CTACATAGCATTCAG
chr18	48627957	48627958	chr18:48627958:G:C	rs79686769	G	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr18	48629715	48629716	chr18:48629716:G:C	rs299713	G	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr18	48716305	48716306	chr18:48716306:C:G	rs1486420754	C	G	C	Sox1.mouse_HMG_2	2	1	-	10.952037460633706	5.559420525787266	ATGACTGACAGTCAT
chr18	48932808	48932809	chr18:48932809:A:C	rs72917785	A	C	A	Sox1.mouse_HMG_2	13	1	+	4.275491770169337	-2.0452242389600106	AAGAATTTCCTTCAT
chr18	48999820	48999821	chr18:48999821:G:A	rs2878901	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr18	49013447	49013448	chr18:49013448:G:A	rs72921619	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr18	49025487	49025488	chr18:49025488:T:C	rs876572	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	49100670	49100671	chr18:49100671:G:A	rs9284426	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr18	49834448	49834449	chr18:49834449:G:A	rs7244073	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr18	49934838	49934839	chr18:49934839:A:C	rs1787595	A	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr18	50092684	50092685	chr18:50092685:A:C	rs74623953	A	C	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr18	50190270	50190271	chr18:50190271:G:A	rs1619740	G	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr18	50203640	50203641	chr18:50203641:T:C	rs8091012	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr18	50552346	50552347	chr18:50552347:G:A	rs28693960	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.84043041878836	1.1950278857721435	CTGACTGACATTCCC
chr18	50590268	50590269	chr18:50590269:A:T	rs7238675	A	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr18	50809783	50809784	chr18:50809784:A:G	rs2586775	A	G	G	Sox1.mouse_HMG_2	1	1	-	5.1266031605935085	0.4826108531002754	CTGATTTACATTCTC
chr18	51462077	51462078	chr18:51462078:C:T	rs7233656	C	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr18	51754179	51754180	chr18:51754180:G:A	rs323111	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr18	52403642	52403643	chr18:52403643:T:C	rs16954863	T	C	C	Sox1.mouse_HMG_2	13	1	-	4.304815790678798	-0.641301897093851	CTGAATAATTTTCAT
chr18	52648488	52648489	chr18:52648489:A:G	rs28516859	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	52690202	52690203	chr18:52690203:G:T	rs8087576	G	T	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr18	52702028	52702029	chr18:52702029:A:G	rs62083453	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr18	52779950	52779951	chr18:52779951:T:A	rs9959370	T	A	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr18	53379492	53379493	chr18:53379493:G:C	rs11876282	G	C	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr18	53547834	53547835	chr18:53547835:A:G	rs117893302	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr18	53637926	53637927	chr18:53637927:G:A	rs11083013	G	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr18	54233467	54233468	chr18:54233468:G:A	rs114730458	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr18	54736434	54736435	chr18:54736435:T:C	rs9952903	T	C	C	Sox1.mouse_HMG_2	0	1	+	4.798607253865344	5.064550447634777	TTGAATTTCATTATT
chr18	54786523	54786524	chr18:54786524:G:A	rs6566848	G	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr18	54992181	54992182	chr18:54992182:T:A	rs961140	T	A	T	Sox1.mouse_HMG_2	1	1	+	6.315166721308909	1.6711744138156766	TTGAATTTCAGTTAG
chr18	54997766	54997767	chr18:54997767:C:T	rs8096352	C	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr18	55078395	55078396	chr18:55078396:G:T	rs72936666	G	T	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr18	55762423	55762424	chr18:55762424:T:A	rs4800998	T	A	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr18	56019390	56019391	chr18:56019391:G:T	rs12457890	G	T	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr18	56158916	56158917	chr18:56158917:C:T	rs72928479	C	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr18	56161027	56161028	chr18:56161028:T:G	rs8086722	T	G	T	Sox1.mouse_HMG_2	1	1	+	7.860231900227817	2.9117684136560076	ATGGATGACATTCAA
chr18	56329735	56329736	chr18:56329736:T:G	rs8099025	T	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr18	56826078	56826079	chr18:56826079:G:A	rs576658279	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr18	56844968	56844969	chr18:56844969:T:A	rs1214039	T	A	A	Sox1.mouse_HMG_2	11	1	+	3.4416490893537084	-3.467105689961512	GTTAATGCCATTCTG
chr18	57309327	57309328	chr18:57309328:G:A	rs9955810	G	A	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr18	57312164	57312165	chr18:57312165:A:G	rs990729	A	G	G	Sox1.mouse_HMG_2	14	1	-	7.542067045881636	6.667454703158899	TTGGATGGCATTCAT
chr18	57312171	57312172	chr18:57312172:C:T	rs990730	C	T	T	Sox1.mouse_HMG_2	7	1	-	7.542067045881636	8.243121865422712	TTGGATGGCATTCAT
chr18	57350294	57350295	chr18:57350295:G:T	rs114101827	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr18	57534228	57534229	chr18:57534229:T:C	rs754789	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr18	57659527	57659528	chr18:57659528:C:A	rs1110965	C	A	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr18	57743259	57743260	chr18:57743260:G:A	rs184436249	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr18	57743278	57743279	chr18:57743279:G:A	rs17064003	G	A	G	Sox1.mouse_HMG_2	7	1	-	4.158990662970796	3.6980462092636888	TTGAATTCCAATCTG
chr18	57836959	57836960	chr18:57836960:A:G	rs4940557	A	G	a	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr18	57984938	57984939	chr18:57984939:A:C	rs7236724	A	C	t	Sox1.mouse_HMG_2	6	1	+	4.524446932391628	0.17203192970326164	ATCAAAAGCATTCAT
chr18	57984939	57984940	chr18:57984940:G:A	rs7235042	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.524446932391628	5.225501751932704	ATCAAAAGCATTCAT
chr18	58359471	58359472	chr18:58359472:C:T	rs72942884	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr18	58439250	58439251	chr18:58439251:T:G	rs4940695	T	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr18	58447912	58447913	chr18:58447913:T:A	rs4245272	T	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr18	58487747	58487748	chr18:58487748:G:A	rs12605493	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr18	58506066	58506067	chr18:58506067:G:A	rs13381392	G	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr18	58576565	58576566	chr18:58576566:T:C	rs7229323	T	C	T	Sox1.mouse_HMG_2	7	1	-	4.565962131951172	3.8649073124100957	GGGAATTAAATTCAA
chr18	58716090	58716091	chr18:58716091:T:C	rs9959997	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr18	58728832	58728833	chr18:58728833:T:A	rs116677505	T	A	T	Sox1.mouse_HMG_2	11	1	+	4.152182056779811	-2.756572722535409	CAGAACAACATTCAG
chr18	58824968	58824969	chr18:58824969:A:T	rs118168217	A	T	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr18	58825011	58825012	chr18:58825012:C:T	rs8083544	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr18	58998834	58998835	chr18:58998835:G:A	rs770780482	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr18	59000369	59000370	chr18:59000370:G:A	rs72954224	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.533392141378486	-0.1391949622897691	CTAAATATCAGTCTC
chr18	59000385	59000386	chr18:59000386:G:T	rs78059169	G	T	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr18	59612753	59612754	chr18:59612754:G:A	rs11872366	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr18	59717662	59717663	chr18:59717663:A:G	rs1788896	A	G	G	Sox1.mouse_HMG_2	3	1	+	2.612345552833048	-4.2964092264821705	ATGACACCCATTCAC
chr18	59721745	59721746	chr18:59721746:T:C	rs11665143	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr18	59901368	59901369	chr18:59901369:C:T	rs7240119	C	T	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr18	60401601	60401602	chr18:60401602:G:A	rs17066890	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr18	61283123	61283124	chr18:61283124:A:G	rs11665042	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr18	61581455	61581456	chr18:61581456:T:C	rs59304542	T	C	.	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr18	61591501	61591502	chr18:61591502:G:T	rs1943337	G	T	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr18	61664581	61664582	chr18:61664582:A:G	rs7227150	A	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr18	61871550	61871551	chr18:61871551:C:T	rs12967834	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr18	61945828	61945829	chr18:61945829:C:G	rs17069070	C	G	G	Sox1.mouse_HMG_2	12	1	+	3.0267117585288754	-3.873736891937489	TTGAATACCAATCCT
chr18	61946767	61946768	chr18:61946768:A:G	rs17069086	A	G	G	Sox1.mouse_HMG_2	9	1	+	4.247633848188553	-2.6611209311266673	TTTAATTGCAGTCAG
chr18	61948574	61948575	chr18:61948575:A:G	rs17069110	A	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr18	61948747	61948748	chr18:61948748:C:G	rs77356261	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	61948796	61948797	chr18:61948797:C:T	rs72934313	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	61993066	61993067	chr18:61993067:T:C	rs11874088	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr18	62201258	62201259	chr18:62201259:C:T	rs11664066	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr18	62201285	62201286	chr18:62201286:T:A	rs11661576	T	A	T	Sox1.mouse_HMG_2	12	1	+	7.40739404509734	5.17953249829923	TTGAATAACATTTTA
chr18	62262430	62262431	chr18:62262431:A:G	rs17069663	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr18	62458878	62458879	chr18:62458879:T:C	rs694419	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr18	62638295	62638296	chr18:62638296:A:T	rs1022649161	A	T	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr18	63255040	63255041	chr18:63255041:G:A	rs3744949	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr18	63255042	63255043	chr18:63255043:C:T	rs3744950	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr18	63280972	63280973	chr18:63280973:T:C	rs72945054	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr18	63287343	63287344	chr18:63287344:A:T	rs2551397	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr18	63526486	63526487	chr18:63526487:C:T	rs12605954	C	T	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr18	64331323	64331324	chr18:64331324:G:A	rs8089715	G	A	G	Sox1.mouse_HMG_2	13	1	+	10.198694710454792	15.144812398227439	ATGACTAACATTCGT
chr18	65256820	65256821	chr18:65256821:T:A	rs79566067	T	A	T	Sox1.mouse_HMG_2	1	1	+	2.3979113004635586	-2.2460810070296744	CTGCCTTGCAGTCAC
chr18	65288132	65288133	chr18:65288133:C:T	rs1505996	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr18	65398684	65398685	chr18:65398685:A:C	rs10871584	A	C	A	Sox1.mouse_HMG_2	14	1	+	5.175120659955013	5.618217681914963	AGAAATGACATTCAA
chr18	65737505	65737506	chr18:65737506:C:T	rs150001408	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr18	65762669	65762670	chr18:65762670:C:A	rs7244243	C	A	C	Sox1.mouse_HMG_2	13	1	-	3.427457631024325	5.179211765638681	CTGAATAGCCTTCGC
chr18	65955851	65955852	chr18:65955852:G:A	rs72939541	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr18	66093856	66093857	chr18:66093857:A:G	rs978418	A	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr18	66375557	66375558	chr18:66375558:C:T	rs4600560	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr18	66622390	66622391	chr18:66622391:T:G	rs11151284	T	G	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr18	66731750	66731751	chr18:66731751:A:G	rs11151300	A	G	A	Sox1.mouse_HMG_2	7	1	-	9.771312994532492	10.232257448239599	TTAAATATCATTCAA
chr18	67217807	67217808	chr18:67217808:G:A	rs4369778	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr18	67217813	67217814	chr18:67217814:G:T	rs113998450	G	T	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr18	67279165	67279166	chr18:67279166:T:A	rs716669	T	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr18	67704075	67704076	chr18:67704076:G:A	rs2448737	G	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr18	67840460	67840461	chr18:67840461:G:C	rs3911662	G	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr18	67854443	67854444	chr18:67854444:T:G	rs514705	T	G	G	Sox1.mouse_HMG_2	1	1	+	12.484786212410077	7.536322725838268	ATAAATACCATTCAT
chr18	68206504	68206505	chr18:68206505:A:G	rs614711	A	G	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr18	68316076	68316077	chr18:68316077:T:C	rs9646603	T	C	T	Sox1.mouse_HMG_2	0	1	+	8.072006688329928	8.33794988209936	TTGAGTTTCATTCAT
chr18	68397799	68397800	chr18:68397800:G:T	rs78026384	G	T	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr18	68468542	68468543	chr18:68468543:G:A	rs183325235	G	A	G	Sox1.mouse_HMG_2	8	1	-	15.15187664473793	9.507449954355947	TTGAATGACATTCAT
chr18	68495592	68495593	chr18:68495593:T:C	rs11872870	T	C	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	68662978	68662979	chr18:68662979:G:A	rs778482646	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr18	68746266	68746267	chr18:68746267:A:G	rs10871631	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr18	68769751	68769752	chr18:68769752:G:T	rs118158871	G	T	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr18	68797052	68797053	chr18:68797053:A:T	rs72958039	A	T	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr18	69249818	69249819	chr18:69249819:A:G	rs117678001	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr18	69455324	69455325	chr18:69455325:A:G	rs59148099	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr18	69958637	69958638	chr18:69958638:T:C	rs150517748	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr18	70044851	70044852	chr18:70044852:T:C	rs140435468	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.4990054748086106	-3.409749304506609	TTGCATGCCATTCTG
chr18	70044868	70044869	chr18:70044869:C:T	rs930294	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr18	70209041	70209042	chr18:70209042:T:C	rs116908718	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr18	70336119	70336120	chr18:70336120:G:A	rs2279371	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr18	70472707	70472708	chr18:70472708:T:A	rs9953912	T	A	a	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr18	70536587	70536588	chr18:70536588:G:A	rs12456151	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr18	70600383	70600384	chr18:70600384:T:C	rs1882465	T	C	T	Sox1.mouse_HMG_2	14	1	-	8.243154524558888	8.407795772453834	CTGAATACCATTAAA
chr18	71718111	71718112	chr18:71718112:G:A	rs75829812	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr18	71761685	71761686	chr18:71761686:A:G	rs4891944	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr18	71761702	71761703	chr18:71761703:T:A	rs4891945	T	A	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr18	72011620	72011621	chr18:72011621:G:C	rs4891971	G	C	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr18	72201187	72201188	chr18:72201188:T:C	rs1443326	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr18	72452642	72452643	chr18:72452643:C:A	rs12606574	C	A	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr18	72964424	72964425	chr18:72964425:G:A	chr18:72964425:G:A	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr18	73282841	73282842	chr18:73282842:C:G	rs34348753	C	G	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr18	73282850	73282851	chr18:73282851:C:T	rs4287657	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr18	73403599	73403600	chr18:73403600:T:C	rs9947437	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr18	73407099	73407100	chr18:73407100:A:C	rs56204622	A	C	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr18	73407114	73407115	chr18:73407115:T:C	rs34297133	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr18	73504999	73505000	chr18:73505000:G:T	chr18:73505000:G:T	G	T	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr18	73528384	73528385	chr18:73528385:G:A	rs12956430	G	A	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr18	73598291	73598292	chr18:73598292:C:T	rs17828044	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr18	73680748	73680749	chr18:73680749:T:A	rs12969840	T	A	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr18	73680827	73680828	chr18:73680828:A:T	rs8097394	A	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr18	74223330	74223331	chr18:74223331:T:C	rs10871733	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr18	74542954	74542955	chr18:74542955:G:A	rs12964208	G	A	A	Sox1.mouse_HMG_2	8	1	-	12.399279129012834	6.754852438630849	TTGAATGACAGTCAT
chr18	74633933	74633934	chr18:74633934:A:C	rs948615	A	C	A	Sox1.mouse_HMG_2	0	1	+	4.850508181781541	4.181631976063184	ATGTATTTCATTCTC
chr18	74833099	74833100	chr18:74833100:A:G	rs17055713	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr18	74944599	74944600	chr18:74944600:T:C	rs7237970	T	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr18	75029811	75029812	chr18:75029812:A:C	rs181156389	A	C	A	Sox1.mouse_HMG_2	3	1	-	3.996992141351165	3.996992141351165	CTGTATGACATTCTA
chr18	75305424	75305425	chr18:75305425:C:T	rs4891262	C	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr18	75663519	75663520	chr18:75663520:G:C	rs2584306	G	C	C	Sox1.mouse_HMG_2	14	1	+	4.161633389246113	4.440089163311115	CTGTATGACATTCTG
chr18	75811819	75811820	chr18:75811820:G:A	rs1982586	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr18	75812533	75812534	chr18:75812534:G:C	rs28480000	G	C	G	Sox1.mouse_HMG_2	2	1	+	5.322874570905416	-0.06974236394102318	TGGAATAACATTCCT
chr18	75881187	75881188	chr18:75881188:G:A	rs113801680	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr18	75924645	75924646	chr18:75924646:A:G	rs17058549	A	G	A	Sox1.mouse_HMG_2	3	1	+	7.562894903051269	0.6541401237360481	TGGACTTTCATTCAT
chr18	75927209	75927210	chr18:75927210:G:A	rs2125932	G	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr18	75977770	75977771	chr18:75977771:C:G	rs9319639	C	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr18	76051714	76051715	chr18:76051715:A:C	rs1030565	A	C	A	Sox1.mouse_HMG_2	13	1	+	4.884716383247881	-1.4359996258814665	TAGAATTCCATTTAG
chr18	76179704	76179705	chr18:76179705:G:T	rs7242910	G	T	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr18	76257270	76257271	chr18:76257271:A:G	rs528221341	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr18	76349043	76349044	chr18:76349044:T:G	chr18:76349044:T:G	T	G	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr18	76384104	76384105	chr18:76384105:T:C	rs11150949	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr18	76452817	76452818	chr18:76452818:T:C	rs17355234	T	C	T	Sox1.mouse_HMG_2	1	1	+	8.624045135250007	3.980052827756775	ATGGATTACATTCAG
chr18	76455626	76455627	chr18:76455627:T:C	rs111659418	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr18	76737717	76737718	chr18:76737718:A:G	rs4273136	A	G	g	Sox1.mouse_HMG_2	5	1	-	6.9593122217363375	0.05055744242111565	CTGAATGCCATGCAG
chr18	76803849	76803850	chr18:76803850:C:T	rs567298423	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr18	77015546	77015547	chr18:77015547:T:A	rs7236968	T	A	T	Sox1.mouse_HMG_2	6	1	+	4.442616972445887	5.28362240718728	ATGAATTCCATTAGT
chr18	77085556	77085557	chr18:77085557:G:A	rs1789135	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr18	77161511	77161512	chr18:77161512:T:G	rs62104604	T	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr18	77254712	77254713	chr18:77254713:T:C	rs2850882	T	C	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr18	77635890	77635891	chr18:77635891:A:C	rs68055747	A	C	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr18	77762700	77762701	chr18:77762701:A:G	rs78509076	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr18	77762707	77762708	chr18:77762708:C:T	rs12953968	C	T	c	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr18	78071418	78071419	chr18:78071419:C:T	rs180693468	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr18	78293979	78293980	chr18:78293980:G:C	rs118018860	G	C	G	Sox1.mouse_HMG_2	7	1	+	2.426774892359635	2.7311449912326413	CTGATTAGCATGCAT
chr18	78508221	78508222	chr18:78508222:G:A	rs377415106	G	A	G	Sox1.mouse_HMG_2	2	1	+	2.5254088542282638	-2.1199936787879534	ATGAGCACCATTCAC
chr18	78508235	78508236	chr18:78508236:C:T	rs112080918	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr18	78525644	78525645	chr18:78525645:G:A	rs566505157	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr18	78539057	78539058	chr18:78539058:A:G	rs4799164	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.894009528544307	-2.0147452507709134	ATGAAGAAAATTCAC
chr18	78544801	78544802	chr18:78544802:C:T	rs144860904	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr18	78546457	78546458	chr18:78546458:G:T	rs1866330	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr18	78759773	78759774	chr18:78759774:C:T	rs1588518	C	T	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr18	78806489	78806490	chr18:78806490:C:T	rs62098901	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr18	79170187	79170188	chr18:79170188:C:G	rs9958554	C	G	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr18	79170188	79170189	chr18:79170189:C:G	rs9304050	C	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr18	79170280	79170281	chr18:79170281:A:G	rs530471572	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr18	79216569	79216570	chr18:79216570:G:A	rs73000194	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.507928484130555	-0.1364982062514311	TTGACTAGCAATCAG
chr18	79784979	79784980	chr18:79784980:T:C	rs113409982	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr18	79855380	79855381	chr18:79855381:G:A	rs4799093	G	A	g	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr18	79944511	79944512	chr18:79944512:C:G	rs3809933	C	G	C	Sox1.mouse_HMG_2	8	1	+	6.182006745211601	0.46347208267589257	ATGACTGGCAGTCTC
chr18	79944528	79944529	chr18:79944529:C:T	rs72984216	C	T	c	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr18	80066305	80066306	chr18:80066306:G:A	rs7227096	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr18	80244355	80244356	chr18:80244356:T:C	rs6506819	T	C	.	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr19	295983	295984	chr19:295984:T:C	rs150777259	T	C	T	Sox1.mouse_HMG_2	6	1	-	5.2793766018409505	3.8391991799723106	ATAAATAAAAGTCAT
chr19	658367	658368	chr19:658368:A:G	rs2040739	A	G	a	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	808094	808095	chr19:808095:G:A	rs755631527	G	A	G	Sox1.mouse_HMG_2	8	1	-	1.1863647654167493	-4.4580619249652385	CTGAAAAGCATGCAG
chr19	906632	906633	chr19:906633:T:C	rs8112519	T	C	-	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr19	921501	921502	chr19:921502:T:G	rs73507533	T	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr19	921528	921529	chr19:921529:C:A	rs73507535	C	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr19	1216173	1216174	chr19:1216174:C:T	rs76054223	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr19	1266852	1266853	chr19:1266853:C:G	rs952088899	C	G	C	Sox1.mouse_HMG_2	0	1	+	4.3869055426569945	4.051545515740151	CGGAATAGCAGTCTC
chr19	1324078	1324079	chr19:1324079:G:A	rs1109001	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr19	1873261	1873262	chr19:1873262:C:T	rs10416817	C	T	T	Sox1.mouse_HMG_2	13	1	-	2.7445939558334853	7.690711643606134	CCGACTGGCATTCGT
chr19	1897929	1897930	chr19:1897930:G:A	rs915853581	G	A	g	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr19	1901938	1901939	chr19:1901939:A:C	rs184688283	A	C	a	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr19	2169121	2169122	chr19:2169122:T:G	rs7256735	T	G	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr19	2317666	2317667	chr19:2317667:T:C	rs730417	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.09064850921971	-3.8181062700955106	CTGACTATCAGTAAC
chr19	2532726	2532727	chr19:2532727:A:G	rs4806864	A	G	A	Sox1.mouse_HMG_2	4	1	+	9.083773700115772	2.2623609309556985	ATGAATTAAAGTCAT
chr19	2589966	2589967	chr19:2589967:G:A	rs11880600	G	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr19	2589967	2589968	chr19:2589968:T:C	rs11878716	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr19	2605870	2605871	chr19:2605871:A:G	rs116411225	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr19	2703031	2703032	chr19:2703032:A:G	rs113391116	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.117654488354071	-1.7302870899262102	ATCACTGACATTCTT
chr19	2787330	2787331	chr19:2787331:G:A	rs941410	G	A	A	Sox1.mouse_HMG_2	4	1	-	3.5234948145092493	-0.9158568867839004	CTGACTATCATTATT
chr19	2905914	2905915	chr19:2905915:G:T	rs11084971	G	T	G	Sox1.mouse_HMG_2	12	1	-	3.7074471566143714	-3.193001493851993	TTGAATACAATTCCA
chr19	3144357	3144358	chr19:3144358:C:T	rs62127294	C	T	c	Sox1.mouse_HMG_2	7	1	+	3.4061204600233004	2.9451760063161934	CTGACTCCCATTCCT
chr19	3327201	3327202	chr19:3327202:T:A	rs73516285	T	A	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr19	3403005	3403006	chr19:3403006:A:G	rs3859564	A	G	A	Sox1.mouse_HMG_2	6	1	+	2.193539489984531	0.7533620681158927	CTGACAAGCATTTAT
chr19	3511710	3511711	chr19:3511711:C:T	rs11672955	C	T	C	Sox1.mouse_HMG_2	8	1	+	1.3945741428725478	-4.249852547509439	ATGAATGACGTGCAC
chr19	3899031	3899032	chr19:3899032:A:G	rs12052042	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.910992696891866	0.2670003893986338	ATGAACATAATTCAT
chr19	3986408	3986409	chr19:3986409:A:T	rs10421759	A	T	A	Sox1.mouse_HMG_2	6	1	-	8.45940388735506	9.300409322096455	ATGAAATACATTCAA
chr19	4061191	4061192	chr19:4061192:C:T	rs10414261	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr19	4371701	4371702	chr19:4371702:T:C	rs532049202	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr19	4708089	4708090	chr19:4708090:C:A	rs4401152	C	A	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr19	5126012	5126013	chr19:5126013:G:A	rs532485030	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr19	5352493	5352494	chr19:5352494:A:G	rs16992932	A	G	A	Sox1.mouse_HMG_2	10	1	-	7.956276088344924	1.1083345100646427	AAGAATATCATTCTC
chr19	5352511	5352512	chr19:5352512:G:T	rs892142	G	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr19	5352512	5352513	chr19:5352513:G:A	rs892141	G	A	g	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	5417822	5417823	chr19:5417823:A:T	rs424836	A	T	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr19	5459649	5459650	chr19:5459650:G:A	rs4807764	G	A	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr19	5459677	5459678	chr19:5459678:C:A	rs4807765	C	A	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr19	5472420	5472421	chr19:5472421:A:G	rs12463032	A	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr19	5472421	5472422	chr19:5472422:G:C	rs12460652	G	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr19	5826195	5826196	chr19:5826196:T:C	rs1678852	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr19	5883434	5883435	chr19:5883435:C:G	rs117336033	C	G	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr19	5990381	5990382	chr19:5990382:A:G	rs147136412	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.127474486386329	-2.781280292928891	GTAAATTACCTTCAT
chr19	6043584	6043585	chr19:6043585:T:G	rs182794516	T	G	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr19	6633608	6633609	chr19:6633609:T:C	rs669631	T	C	t	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr19	7083749	7083750	chr19:7083750:A:G	rs8110740	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr19	7103304	7103305	chr19:7103305:T:C	rs16994131	T	C	-	Sox1.mouse_HMG_2	14	1	-	5.823101528319495	5.987742776214443	GTAAATTGCATTCTA
chr19	7239634	7239635	chr19:7239635:T:C	rs149554085	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr19	7399047	7399048	chr19:7399048:C:T	rs942173069	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr19	7436913	7436914	chr19:7436914:G:A	rs11670340	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr19	7691201	7691202	chr19:7691202:T:C	rs66508756	T	C	N	Sox1.mouse_HMG_2	6	1	+	3.7631899192850793	0.25178035133810817	CAGAAATGCATTCAT
chr19	7691708	7691709	chr19:7691709:G:A	rs62110724	G	A	g	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr19	7738280	7738281	chr19:7738281:A:G	rs7254342	A	G	a	Sox1.mouse_HMG_2	10	1	-	2.446755963397713	-4.401185614882566	ATCACCACCATTCAT
chr19	7738290	7738291	chr19:7738291:T:C	rs7258175	T	C	t	Sox1.mouse_HMG_2	0	1	-	2.446755963397713	1.4425197307625108	ATCACCACCATTCAT
chr19	7815582	7815583	chr19:7815583:C:T	rs7245635	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr19	8038351	8038352	chr19:8038352:T:C	rs6603133	T	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	8303909	8303910	chr19:8303910:C:A	rs2232783	C	A	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr19	8320641	8320642	chr19:8320642:T:C	rs111822940	T	C	T	Sox1.mouse_HMG_2	10	1	-	4.3336942560313485	8.429038318586532	CTGACTGGCAATCAG
chr19	8694456	8694457	chr19:8694457:G:A	rs115450201	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr19	8811613	8811614	chr19:8811614:A:G	rs781927784	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr19	8923112	8923113	chr19:8923113:G:C	rs149789876	G	C	C	Sox1.mouse_HMG_2	8	1	-	9.463321931485421	3.744787268949712	TTGACTTACAGTCAG
chr19	9009030	9009031	chr19:9009031:C:T	rs114989635	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr19	9139693	9139694	chr19:9139694:G:A	rs8103016	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr19	9171701	9171702	chr19:9171702:G:A	rs7257452	G	A	.	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr19	9207375	9207376	chr19:9207376:C:T	rs74892143	C	T	c	Sox1.mouse_HMG_2	2	1	-	3.8836426162238538	-0.7617599167923624	ATGACTCACTTTCAT
chr19	9228041	9228042	chr19:9228042:A:C	rs6511949	A	C	-	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr19	9321230	9321231	chr19:9321231:T:C	rs2082426	T	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr19	9482811	9482812	chr19:9482812:G:A	rs764017803	G	A	-	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr19	9482819	9482820	chr19:9482820:G:A	rs12975453	G	A	-	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr19	9649665	9649666	chr19:9649666:A:T	rs11880397	A	T	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr19	9839589	9839590	chr19:9839590:C:T	rs62105747	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr19	10206440	10206441	chr19:10206441:C:G	rs1431641598	C	G	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	10345619	10345620	chr19:10345620:T:C	rs144726883	T	C	t	Sox1.mouse_HMG_2	13	1	-	8.049987629568271	3.1038699417956224	TGGAATTACAGTCAT
chr19	10346795	10346796	chr19:10346796:T:G	rs28378712	T	G	t	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr19	10416154	10416155	chr19:10416155:G:A	rs35916055	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr19	10416177	10416178	chr19:10416178:C:A	rs34953890	C	A	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr19	10554397	10554398	chr19:10554398:C:T	rs752431277	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr19	10655210	10655211	chr19:10655211:A:T	rs548183393	A	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr19	10655249	10655250	chr19:10655250:T:C	rs79078151	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr19	11125178	11125179	chr19:11125179:A:T	rs73017023	A	T	a	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr19	11174713	11174714	chr19:11174714:G:A	rs440677	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr19	11275548	11275549	chr19:11275549:C:T	rs375323	C	T	C	Sox1.mouse_HMG_2	6	1	+	3.5009251186386745	7.012334686585646	GTAAATCCCAGTCAC
chr19	11457206	11457207	chr19:11457207:A:T	rs311788	A	T	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr19	11559625	11559626	chr19:11559626:A:G	rs138847645	A	G	A	Sox1.mouse_HMG_2	9	1	+	1.6466995609215225	-5.262055218393697	GTGACTTCCATGCTG
chr19	11566329	11566330	chr19:11566330:T:C	rs34912772	T	C	T	Sox1.mouse_HMG_2	9	1	-	2.981904541729686	-3.9268502375855325	GGGACTGGCATTCTC
chr19	11698393	11698394	chr19:11698394:A:G	rs557143771	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.014813662545508	-1.6291786449477246	CTGAGTAGCATTCCT
chr19	11768604	11768605	chr19:11768605:G:T	rs383884	G	T	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr19	11923789	11923790	chr19:11923790:G:A	rs76739562	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr19	11923790	11923791	chr19:11923791:G:C	rs10404066	G	C	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	11978989	11978990	chr19:11978990:C:G	rs7250894	C	G	c	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr19	11985090	11985091	chr19:11985091:T:C	rs10409365	T	C	T	Sox1.mouse_HMG_2	1	1	+	1.8874195849578261	-2.756572722535409	CTGAATAACCTACAG
chr19	12090995	12090996	chr19:12090996:G:A	rs377446832	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr19	12091002	12091003	chr19:12091003:G:C	chr19:12091003:G:C	G	C	G	Sox1.mouse_HMG_2	0	1	+	1.5520595580409826	1.8874195849578261	GTGAATAACCTGCAG
chr19	12467291	12467292	chr19:12467292:G:A	rs35996066	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr19	12540253	12540254	chr19:12540254:C:T	chr19:12540254:C:T	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr19	12580292	12580293	chr19:12580293:G:A	rs117241606	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr19	12777889	12777890	chr19:12777890:G:C	rs528328851	G	C	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr19	12840133	12840134	chr19:12840134:G:C	rs10411443	G	C	G	Sox1.mouse_HMG_2	3	1	-	1.481916153027694	1.481916153027694	ATGCGTGACATTCAC
chr19	12952670	12952671	chr19:12952671:C:T	rs181929934	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr19	13254297	13254298	chr19:13254298:C:T	chr19:13254298:C:T	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr19	13277321	13277322	chr19:13277322:T:C	rs77790205	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr19	13277334	13277335	chr19:13277335:G:T	rs570735131	G	T	G	Sox1.mouse_HMG_2	2	1	-	3.9127810392801816	4.659995441110403	GACAATTTCATTCAC
chr19	13428500	13428501	chr19:13428501:A:G	rs73922401	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr19	13493673	13493674	chr19:13493674:T:A	rs4926295	T	A	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr19	13549634	13549635	chr19:13549635:G:A	rs11665851	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr19	13587474	13587475	chr19:13587475:C:A	rs568808113	C	A	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr19	13617818	13617819	chr19:13617819:T:C	rs539344	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr19	13718994	13718995	chr19:13718995:A:G	rs149009754	A	G	a	Sox1.mouse_HMG_2	10	1	-	2.6308394314361987	-4.217102146844082	TGGAATTCCATTGAC
chr19	13830207	13830208	chr19:13830208:A:C	rs56177954	A	C	A	Sox1.mouse_HMG_2	3	1	+	8.607421395616228	1.6986666163010065	ATGAATATCATGCAG
chr19	14606978	14606979	chr19:14606979:A:G	rs10409868	A	G	.	Sox1.mouse_HMG_2	5	1	-	5.846720353387709	-1.0620344259275138	AAAAATTCCATTCAG
chr19	14891586	14891587	chr19:14891587:G:C	rs76719132	G	C	g	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr19	15404857	15404858	chr19:15404858:T:C	rs140956857	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	15467064	15467065	chr19:15467065:A:G	rs190317939	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	15467098	15467099	chr19:15467099:A:C	rs559882313	A	C	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr19	15535433	15535434	chr19:15535434:G:T	rs1273526	G	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr19	15589381	15589382	chr19:15589382:A:C	rs16980602	A	C	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr19	16034920	16034921	chr19:16034921:C:A	rs73513755	C	A	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr19	16060797	16060798	chr19:16060798:T:C	rs4808030	T	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr19	16079071	16079072	chr19:16079072:G:A	rs77808283	G	A	G	Sox1.mouse_HMG_2	0	1	+	2.8199731734995193	3.82420940613472	GTGACTAGCAGTTTT
chr19	16079425	16079426	chr19:16079426:G:C	rs867725174	G	C	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr19	16197472	16197473	chr19:16197473:G:A	chr19:16197473:G:A	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr19	16197487	16197488	chr19:16197488:T:C	rs955141853	T	C	T	Sox1.mouse_HMG_2	0	1	+	6.780711038122052	7.046654231891485	TTGATTGCCATTCAG
chr19	16238381	16238382	chr19:16238382:T:C	rs376127	T	C	T	Sox1.mouse_HMG_2	3	1	+	1.802797546336099	1.802797546336099	CTGTAGTCCATTCAT
chr19	16259859	16259860	chr19:16259860:A:T	rs12981672	A	T	T	Sox1.mouse_HMG_2	4	1	+	9.949242481060784	3.127829711900711	CTGAATAACATGCAT
chr19	16316363	16316364	chr19:16316364:A:G	rs17709615	A	G	a	Sox1.mouse_HMG_2	11	1	-	4.014850623778141	-2.8939041555370792	AGGAATTACAATCAC
chr19	16328686	16328687	chr19:16328687:C:T	rs4808485	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr19	16368599	16368600	chr19:16368600:G:A	rs35042571	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr19	16368848	16368849	chr19:16368849:C:T	rs10421252	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr19	16509281	16509282	chr19:16509282:C:T	rs74823584	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr19	16944147	16944148	chr19:16944148:C:T	rs10417059	C	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr19	16957810	16957811	chr19:16957811:C:G	rs1457090	C	G	G	Sox1.mouse_HMG_2	0	1	-	1.3257634539950196	1.6611234809118636	GTGAAAGACACTCAT
chr19	17086548	17086549	chr19:17086549:A:G	rs148525777	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr19	17291115	17291116	chr19:17291116:G:T	rs571322642	G	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr19	17391678	17391679	chr19:17391679:T:C	rs111815278	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr19	17617324	17617325	chr19:17617325:G:A	rs77568996	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr19	17717207	17717208	chr19:17717208:T:C	rs11673001	T	C	T	Sox1.mouse_HMG_2	5	1	+	7.175242419049213	0.26648763973399364	TAGACTTCCATTCAG
chr19	17853143	17853144	chr19:17853144:G:A	rs55988375	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr19	17950699	17950700	chr19:17950700:T:C	rs7250332	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr19	17965411	17965412	chr19:17965412:C:A	rs12980434	C	A	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr19	18053832	18053833	chr19:18053833:T:C	rs4808741	T	C	T	Sox1.mouse_HMG_2	4	1	-	8.518517067022897	1.697104297862822	CTGAATAGCATTCCA
chr19	18053846	18053847	chr19:18053847:A:G	rs10424168	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr19	18589909	18589910	chr19:18589910:C:T	rs112860805	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr19	18713227	18713228	chr19:18713228:C:G	rs34482977	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr19	18894780	18894781	chr19:18894781:T:G	chr19:18894781:T:G	T	G	T	Sox1.mouse_HMG_2	3	1	-	1.7221565758110646	-5.186598203504156	CTGACTGCCACTCTC
chr19	19032645	19032646	chr19:19032646:C:T	rs28445835	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr19	19113315	19113316	chr19:19113316:T:G	rs143276472	T	G	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr19	19113357	19113358	chr19:19113358:G:T	rs76070713	G	T	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr19	19113358	19113359	chr19:19113359:C:T	rs114729479	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr19	19304861	19304862	chr19:19304862:C:T	rs57238894	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr19	19385571	19385572	chr19:19385572:T:G	rs952731234	T	G	T	Sox1.mouse_HMG_2	13	1	-	4.043282681318485	-2.2774333278108623	ATGACTGACAGGCAT
chr19	19385603	19385604	chr19:19385604:A:G	rs924413303	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr19	19492882	19492883	chr19:19492883:C:A	rs4808964	C	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr19	19661654	19661655	chr19:19661655:C:A	rs377319689	C	A	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr19	19661660	19661661	chr19:19661661:A:T	rs60030397	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr19	19871956	19871957	chr19:19871957:C:T	rs115506409	C	T	N	Sox1.mouse_HMG_2	7	1	+	2.4238256252715615	1.9628811715644554	CTGGCTTCCAGTCAG
chr19	19959546	19959547	chr19:19959547:A:G	rs529854852	A	G	a	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr19	20040447	20040448	chr19:20040448:T:C	rs8104703	T	C	N	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr19	20258706	20258707	chr19:20258707:C:T	rs139204439	C	T	c	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	20362511	20362512	chr19:20362512:A:C	rs11666639	A	C	.	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr19	20368244	20368245	chr19:20368245:A:G	rs12459491	A	G	.	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr19	20368247	20368248	chr19:20368248:A:G	rs10775592	A	G	.	Sox1.mouse_HMG_2	0	1	+	2.910213151347816	1.905976918712615	ATGACTTTCAGGCAC
chr19	20423249	20423250	chr19:20423250:T:C	rs7248291	T	C	.	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr19	20867122	20867123	chr19:20867123:C:T	rs59954926	C	T	c	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr19	20870744	20870745	chr19:20870745:G:A	rs146559270	G	A	-	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr19	21020545	21020546	chr19:21020546:G:A	rs893197842	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr19	21056853	21056854	chr19:21056854:T:C	rs116573353	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr19	21130036	21130037	chr19:21130037:T:C	rs11667905	T	C	t	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr19	21149003	21149004	chr19:21149004:C:A	chr19:21149004:C:A	C	A	C	Sox1.mouse_HMG_2	9	1	+	3.1210134278586157	10.029768207173838	ATAAATTTCCTTCAG
chr19	21289641	21289642	chr19:21289642:G:A	rs540714	G	A	N	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr19	21419287	21419288	chr19:21419288:A:T	rs2650844	A	T	.	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr19	21478849	21478850	chr19:21478850:T:C	rs2562459	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr19	21492111	21492112	chr19:21492112:A:G	rs2562448	A	G	G	Sox1.mouse_HMG_2	7	1	+	2.8794063835886523	2.178351564047577	GTGACCCACATTCAT
chr19	21593529	21593530	chr19:21593530:C:A	rs2292986	C	A	.	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	21707536	21707537	chr19:21707537:G:A	rs6511285	G	A	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr19	21767992	21767993	chr19:21767993:C:A	rs4467196	C	A	N	Sox1.mouse_HMG_2	6	1	-	5.79164396440838	6.3908159515356235	GTGGCTGACATTCAT
chr19	21849019	21849020	chr19:21849020:G:T	rs2457794	G	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr19	21934111	21934112	chr19:21934112:G:A	rs10410660	G	A	g	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr19	21941264	21941265	chr19:21941265:T:G	rs2522095	T	G	N	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr19	22341069	22341070	chr19:22341070:T:C	rs112474384	T	C	N	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr19	22423196	22423197	chr19:22423197:C:T	rs35144209	C	T	.	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr19	23087105	23087106	chr19:23087106:A:T	rs2963070	A	T	-	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr19	23172717	23172718	chr19:23172718:C:T	rs11882645	C	T	-	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr19	23312595	23312596	chr19:23312596:A:C	rs17490758	A	C	-	Sox1.mouse_HMG_2	6	1	+	6.374192211901843	2.021777209213476	GTGACTATCATACAT
chr19	23338435	23338436	chr19:23338436:G:A	rs55666470	G	A	-	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr19	23513667	23513668	chr19:23513668:A:T	rs80059906	A	T	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	23519130	23519131	chr19:23519131:T:C	rs10402242	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr19	23577882	23577883	chr19:23577883:C:T	rs73021999	C	T	c	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr19	23685809	23685810	chr19:23685810:T:C	rs77391742	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr19	23958168	23958169	chr19:23958169:C:A	rs16982949	C	A	c	Sox1.mouse_HMG_2	14	1	+	4.9158311331750335	4.472734111215083	AGGAATTACAGTCTC
chr19	24075740	24075741	chr19:24075741:A:C	rs12976145	A	C	A	Sox1.mouse_HMG_2	13	1	+	8.050772214733174	1.7300562056038251	CTGACTAGAATTCAC
chr19	24335959	24335960	chr19:24335960:C:G	rs1902441	C	G	.	Sox1.mouse_HMG_2	14	1	+	3.9540374227432027	3.6755816486782003	AGGAACTACATTCAC
chr19	24892988	24892989	chr19:24892989:C:T	rs1256262461	C	T	.	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr19	27963844	27963845	chr19:27963845:C:T	rs10402778	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr19	27966621	27966622	chr19:27966622:G:A	rs55793564	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.313465456710523	5.014520276251599	ATAAATAGCATTTTT
chr19	28124402	28124403	chr19:28124403:T:C	rs2059838	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr19	28315001	28315002	chr19:28315002:A:G	rs1824151	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr19	28394426	28394427	chr19:28394427:A:G	rs1476762	A	G	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr19	28394685	28394686	chr19:28394686:A:G	rs10460161	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr19	28424289	28424290	chr19:28424290:T:C	rs12709832	T	C	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr19	28424971	28424972	chr19:28424972:G:A	rs28697176	G	A	A	Sox1.mouse_HMG_2	12	1	-	3.427853738390641	-1.2447333652776131	TAGAATTTCAGTCTC
chr19	28544783	28544784	chr19:28544784:T:C	rs145743506	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr19	28590854	28590855	chr19:28590855:G:T	rs58084028	G	T	G	Sox1.mouse_HMG_2	6	1	-	3.086128912397711	7.43854391508608	GTGAATCTCATCCAA
chr19	28794235	28794236	chr19:28794236:A:G	rs918431	A	G	G	Sox1.mouse_HMG_2	4	1	+	4.242116491173508	-2.5792962779865634	CTGAATATATTTCAT
chr19	28794259	28794260	chr19:28794260:C:T	rs10401729	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr19	28871856	28871857	chr19:28871857:A:G	rs73015395	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr19	28880225	28880226	chr19:28880226:A:G	rs56326629	A	G	G	Sox1.mouse_HMG_2	3	1	+	3.8095972226609356	-3.099157556654285	CAGAATCTCATTCTT
chr19	28880649	28880650	chr19:28880650:A:C	rs7245941	A	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr19	28925978	28925979	chr19:28925979:A:C	rs10414321	A	C	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr19	29040909	29040910	chr19:29040910:T:C	rs8106501	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr19	29080110	29080111	chr19:29080111:G:A	rs2865493	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.903176201998182	-1.741250488383805	CTGAATTTCCTTCTG
chr19	29162381	29162382	chr19:29162382:G:A	rs1990766	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr19	29171670	29171671	chr19:29171671:G:T	rs73526451	G	T	G	Sox1.mouse_HMG_2	3	1	-	3.187644796559562	10.096399575874782	ATGCATGACATTTAA
chr19	29288745	29288746	chr19:29288746:G:C	rs7249738	G	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	29346343	29346344	chr19:29346344:C:T	rs10409965	C	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr19	29368112	29368113	chr19:29368113:C:T	rs1990390	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.173336425128506	-1.4992506785397484	CTTAATTACAGTCTT
chr19	29382894	29382895	chr19:29382895:C:A	rs8110676	C	A	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr19	29397783	29397784	chr19:29397784:C:T	rs73537194	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr19	29428298	29428299	chr19:29428299:A:G	rs873859	A	G	G	Sox1.mouse_HMG_2	10	1	-	11.474150743972055	4.626209165691774	GTGAATAGCATTCTG
chr19	29428317	29428318	chr19:29428318:C:T	rs8107574	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	29564878	29564879	chr19:29564879:C:T	rs77509104	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr19	29625221	29625222	chr19:29625222:G:A	rs79583940	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr19	29625268	29625269	chr19:29625269:A:G	rs891062	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr19	29754674	29754675	chr19:29754675:A:C	rs16963257	A	C	A	Sox1.mouse_HMG_2	9	1	+	4.240219552153894	-2.6685352271613274	GAGAATAACATTCCA
chr19	30267097	30267098	chr19:30267098:T:G	rs74724873	T	G	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr19	30319272	30319273	chr19:30319273:G:A	rs187733829	G	A	G	Sox1.mouse_HMG_2	8	1	-	3.7179504046955607	-1.9264762856864261	CAGAATATCATTCCA
chr19	30349342	30349343	chr19:30349343:G:T	rs1433078	G	T	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr19	30408374	30408375	chr19:30408375:A:G	rs10425871	A	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr19	30558156	30558157	chr19:30558157:T:G	rs7250014	T	G	T	Sox1.mouse_HMG_2	5	1	+	1.962250611161543	-4.9465041681536785	GGGAATGCCATTGAC
chr19	30586355	30586356	chr19:30586356:G:T	rs6510171	G	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr19	30721181	30721182	chr19:30721182:A:G	rs12981643	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr19	31338996	31338997	chr19:31338997:A:C	rs924150	A	C	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr19	31348088	31348089	chr19:31348089:C:T	rs62102623	C	T	C	Sox1.mouse_HMG_2	14	1	-	2.7044510018662695	2.539809753971322	ATGAGTAACACTCAG
chr19	31348089	31348090	chr19:31348090:T:C	rs557197967	T	C	T	Sox1.mouse_HMG_2	13	1	-	2.7044510018662695	-2.2416666859063787	ATGAGTAACACTCAG
chr19	31383858	31383859	chr19:31383859:A:G	rs3095746	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr19	31400610	31400611	chr19:31400611:G:C	rs2160753	G	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr19	31438584	31438585	chr19:31438585:C:T	rs4473304	C	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr19	31562150	31562151	chr19:31562151:C:A	rs10420065	C	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr19	31818981	31818982	chr19:31818982:C:T	rs10405473	C	T	C	Sox1.mouse_HMG_2	7	1	-	8.289991784008382	8.991046603549457	CTGAATAGCATTTTT
chr19	31995804	31995805	chr19:31995805:T:G	rs7507934	T	G	T	Sox1.mouse_HMG_2	11	1	+	4.198301545056723	-2.710453234258497	TAGAAATACATTCAT
chr19	32103407	32103408	chr19:32103408:C:T	rs34486100	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr19	32106389	32106390	chr19:32106390:T:G	rs8113804	T	G	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr19	32289666	32289667	chr19:32289667:A:G	rs1434620764	A	G	A	Sox1.mouse_HMG_2	4	1	+	2.880418920415035	-3.940993848745038	ATTAAGTACATTCAT
chr19	32343863	32343864	chr19:32343864:C:G	rs759617	C	G	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr19	32374157	32374158	chr19:32374158:G:T	rs57382133	G	T	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr19	32567608	32567609	chr19:32567609:G:A	rs74844669	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr19	32682454	32682455	chr19:32682455:T:C	chr19:32682455:T:C	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.336841934734059	-2.5719128445811603	TTAAAAAGCATTCAT
chr19	32699356	32699357	chr19:32699357:C:T	rs35709439	C	T	c	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr19	32699378	32699379	chr19:32699379:T:C	rs6510279	T	C	C	Sox1.mouse_HMG_2	10	1	+	4.154902028313234	-2.693039549967047	CAGAGTTCCATTCAT
chr19	32709505	32709506	chr19:32709506:C:T	rs10427129	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr19	32868884	32868885	chr19:32868885:A:T	rs6510301	A	T	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr19	32953160	32953161	chr19:32953161:G:A	rs4805830	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr19	33038074	33038075	chr19:33038075:G:T	rs75693963	G	T	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr19	33054974	33054975	chr19:33054975:C:T	rs12462935	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr19	33172282	33172283	chr19:33172283:T:G	rs10422125	T	G	T	Sox1.mouse_HMG_2	5	1	+	8.831160635608585	1.9224058562933641	TTGAATGACATTCCT
chr19	33216799	33216800	chr19:33216800:G:A	rs7508758	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr19	33244574	33244575	chr19:33244575:T:C	rs10407282	T	C	C	Sox1.mouse_HMG_2	1	1	+	3.482633079711482	-1.161359227781753	CTGACTAACATTTCT
chr19	33280858	33280859	chr19:33280859:C:A	rs75454155	C	A	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr19	33350704	33350705	chr19:33350705:G:A	rs12610763	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr19	33397177	33397178	chr19:33397178:G:A	rs117490768	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr19	33456819	33456820	chr19:33456820:C:T	rs7256583	C	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr19	33469450	33469451	chr19:33469451:C:T	rs76517094	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr19	33469489	33469490	chr19:33469490:T:C	rs10404460	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr19	33478084	33478085	chr19:33478085:T:A	rs61748998	T	A	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr19	33659378	33659379	chr19:33659379:A:G	rs12983177	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.1622311747512937	-3.7465236045639263	CTCAATAGAAGTCAT
chr19	33660315	33660316	chr19:33660316:C:T	rs112000775	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr19	33816096	33816097	chr19:33816097:G:A	rs40815	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr19	33816125	33816126	chr19:33816126:C:A	rs62101384	C	A	C	Sox1.mouse_HMG_2	12	1	+	3.7904937912050833	-3.1099548592612805	ACCACTAACATTCAA
chr19	34099713	34099714	chr19:34099714:G:A	rs524232	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr19	34244462	34244463	chr19:34244463:A:G	rs1651800	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr19	34259661	34259662	chr19:34259662:G:T	rs11084762	G	T	g	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr19	34371240	34371241	chr19:34371241:C:G	rs529308707	C	G	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr19	34749248	34749249	chr19:34749249:G:T	rs6510448	G	T	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr19	34960491	34960492	chr19:34960492:T:C	rs12976023	T	C	T	Sox1.mouse_HMG_2	10	1	-	3.6181659031100715	7.713509965665256	AGGAATTCCAATCAC
chr19	35006958	35006959	chr19:35006959:A:G	rs8102590	A	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr19	35006959	35006960	chr19:35006960:T:C	rs558222086	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr19	35164691	35164692	chr19:35164692:C:T	rs78794409	C	T	N	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	35182167	35182168	chr19:35182168:G:A	rs10423916	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr19	35239234	35239235	chr19:35239235:G:A	rs12971669	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr19	35269852	35269853	chr19:35269853:C:G	rs368165249	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr19	35392648	35392649	chr19:35392649:T:C	rs35777556	T	C	C	Sox1.mouse_HMG_2	6	1	+	2.5817849001856654	-0.9296246677613079	ATGAATTACCTTCCC
chr19	35396120	35396121	chr19:35396121:C:T	rs71352989	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr19	35483299	35483300	chr19:35483300:G:A	rs8111522	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr19	35664137	35664138	chr19:35664138:T:G	rs73599286	T	G	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr19	35664170	35664171	chr19:35664171:G:A	rs57180990	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr19	35757842	35757843	chr19:35757843:C:G	chr19:35757843:C:G	C	G	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr19	35822262	35822263	chr19:35822263:G:A	rs7254384	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr19	36215021	36215022	chr19:36215022:T:C	rs543265535	T	C	T	Sox1.mouse_HMG_2	7	1	-	4.596164128478411	3.895109308937335	CTGAATTACCTTCTA
chr19	36215037	36215038	chr19:36215038:T:C	chr19:36215038:T:C	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	36230554	36230555	chr19:36230555:G:A	rs59295196	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr19	36917035	36917036	chr19:36917036:G:A	rs10416732	G	A	A	Sox1.mouse_HMG_2	8	1	-	2.921778880177645	-2.7226478102043417	CTAACTAACATACAT
chr19	36939293	36939294	chr19:36939294:C:G	rs113610365	C	G	C	Sox1.mouse_HMG_2	12	1	+	5.032996861423646	-1.867451789042718	ATGAAGTCCATTCTG
chr19	36973212	36973213	chr19:36973213:T:G	rs908805840	T	G	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr19	36987214	36987215	chr19:36987215:G:A	rs1449200	G	A	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr19	37691892	37691893	chr19:37691893:C:A	rs143715054	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr19	37932672	37932673	chr19:37932673:G:A	rs530351222	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr19	37954054	37954055	chr19:37954055:A:G	rs7254248	A	G	A	Sox1.mouse_HMG_2	6	1	-	4.094604644563405	0.5831950766164328	TTCAATTACATTCGA
chr19	38095834	38095835	chr19:38095835:G:A	rs1654364	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr19	38258272	38258273	chr19:38258273:G:A	rs11668070	G	A	A	Sox1.mouse_HMG_2	10	1	+	3.942820855577344	-0.1525232069778396	AAAAATTGCAGTCAT
chr19	38317216	38317217	chr19:38317217:C:T	rs186754461	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr19	38426454	38426455	chr19:38426455:T:C	rs17640544	T	C	T	Sox1.mouse_HMG_2	4	1	-	9.271244242977874	2.4498314738178006	ATAAATATCAGTCAT
chr19	38658625	38658626	chr19:38658626:T:G	rs115270880	T	G	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr19	38674845	38674846	chr19:38674846:C:A	rs532563779	C	A	C	Sox1.mouse_HMG_2	8	1	+	5.682068548821211	0.8325717333091112	GTGCCTACCATTCAG
chr19	38674866	38674867	chr19:38674867:G:C	rs999046460	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr19	38794224	38794225	chr19:38794225:A:C	rs58406458	A	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr19	38904690	38904691	chr19:38904691:T:C	rs11879872	T	C	T	Sox1.mouse_HMG_2	0	1	-	2.646799954491799	1.6425637218565978	ATGAATCACAGTGAC
chr19	39078741	39078742	chr19:39078742:G:C	rs393559	G	C	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr19	39078756	39078757	chr19:39078757:G:A	rs115214039	G	A	G	Sox1.mouse_HMG_2	8	1	-	2.84422996264732	-2.8001967277346673	CTGAATCACGGTCAT
chr19	39401761	39401762	chr19:39401762:C:T	rs745716005	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr19	39539345	39539346	chr19:39539346:C:T	rs8105143	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr19	39644172	39644173	chr19:39644173:T:A	rs7258408	T	A	-	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr19	39685188	39685189	chr19:39685189:A:G	rs7251304	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr19	39695797	39695798	chr19:39695798:G:A	rs72480732	G	A	g	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr19	39731892	39731893	chr19:39731893:T:C	rs367788	T	C	-	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr19	39731967	39731968	chr19:39731968:C:T	rs75339357	C	T	-	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr19	39911754	39911755	chr19:39911755:T:C	rs56238646	T	C	.	Sox1.mouse_HMG_2	3	1	-	4.079592723488806	-2.829162055826418	TCAACTTACATTCAT
chr19	39913650	39913651	chr19:39913651:A:G	rs12459958	A	G	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr19	39971597	39971598	chr19:39971598:G:A	rs234371	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr19	40157579	40157580	chr19:40157580:C:T	rs8111518	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr19	40229757	40229758	chr19:40229758:A:G	rs73933225	A	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	40658478	40658479	chr19:40658479:T:A	rs2561558	T	A	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr19	40726306	40726307	chr19:40726307:C:G	rs141182844	C	G	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr19	40744827	40744828	chr19:40744828:G:T	rs138724383	G	T	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr19	40818407	40818408	chr19:40818408:T:C	rs28554014	T	C	C	Sox1.mouse_HMG_2	11	1	+	5.865792325282869	-1.0429624540323505	ATGACTCTCATTCTC
chr19	40891009	40891010	chr19:40891010:A:G	rs10406188	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr19	41018181	41018182	chr19:41018182:A:G	rs707265	A	G	g	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr19	41175796	41175797	chr19:41175797:C:T	rs114270377	C	T	.	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr19	41216707	41216708	chr19:41216708:A:G	rs8107802	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr19	41225681	41225682	chr19:41225682:G:C	chr19:41225682:G:C	G	C	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	41521750	41521751	chr19:41521751:A:G	rs111882742	A	G	-	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr19	41547185	41547186	chr19:41547186:T:C	rs758768	T	C	-	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr19	41648996	41648997	chr19:41648997:T:G	rs2016082	T	G	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr19	41700821	41700822	chr19:41700822:T:G	rs112860809	T	G	N	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr19	41719604	41719605	chr19:41719605:C:T	rs113199182	C	T	N	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr19	41727420	41727421	chr19:41727421:G:A	rs2002926	G	A	N	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr19	41850875	41850876	chr19:41850876:T:A	rs10500284	T	A	N	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr19	41922092	41922093	chr19:41922093:C:T	rs7260129	C	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr19	42024693	42024694	chr19:42024694:T:A	rs114155340	T	A	T	Sox1.mouse_HMG_2	4	1	-	5.9010628049852185	-0.9203499641748532	TGGAATGCCAGTCAG
chr19	42140532	42140533	chr19:42140533:C:T	rs77223770	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr19	42480983	42480984	chr19:42480984:A:G	rs150645404	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr19	42889773	42889774	chr19:42889774:A:G	rs10411688	A	G	-	Sox1.mouse_HMG_2	0	1	-	4.946260011627423	5.212203205396856	TTTAATCCCATTCAT
chr19	42923473	42923474	chr19:42923474:A:G	rs10409077	A	G	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr19	43150056	43150057	chr19:43150057:C:A	rs8111681	C	A	.	Sox1.mouse_HMG_2	2	1	-	7.162779849246921	0.26608551762420707	CTGAATCCCATTCGT
chr19	43475569	43475570	chr19:43475570:A:G	rs375125107	A	G	A	Sox1.mouse_HMG_2	5	1	-	1.3856831253163722	-5.523071653998848	CTGAATTACCCTCAC
chr19	43519625	43519626	chr19:43519626:A:G	rs10416091	A	G	A	Sox1.mouse_HMG_2	5	1	+	1.186364765416749	1.186364765416749	CTGTAAAGCATTCAG
chr19	43652528	43652529	chr19:43652529:G:A	rs1007495505	G	A	g	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr19	43753431	43753432	chr19:43753432:G:A	rs76850817	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr19	43759895	43759896	chr19:43759896:A:G	rs79201345	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr19	43778878	43778879	chr19:43778879:T:C	rs56681946	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr19	43983736	43983737	chr19:43983737:A:G	rs397133	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr19	44103393	44103394	chr19:44103394:G:T	rs28539456	G	T	.	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr19	44449007	44449008	chr19:44449008:A:G	rs73935677	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr19	44477100	44477101	chr19:44477101:G:A	rs954313	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr19	44613412	44613413	chr19:44613413:G:A	rs846899	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr19	44895907	44895908	chr19:44895908:C:G	rs147707133	C	G	.	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr19	45040114	45040115	chr19:45040115:A:G	rs11879122	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr19	45185342	45185343	chr19:45185343:A:G	rs76133116	A	G	A	Sox1.mouse_HMG_2	14	1	-	7.777020311607231	6.902407968884495	GTGAAGGCCATTCAT
chr19	45301048	45301049	chr19:45301049:T:A	rs344802	T	A	A	Sox1.mouse_HMG_2	4	1	-	6.549142790898112	-0.27226997826195876	ATGAAAAACATTCTC
chr19	45447166	45447167	chr19:45447167:C:T	rs138045983	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	45533737	45533738	chr19:45533738:C:G	rs116948137	C	G	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr19	45809846	45809847	chr19:45809847:C:T	rs16980027	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr19	46021037	46021038	chr19:46021038:A:T	rs2041991	A	T	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr19	46232311	46232312	chr19:46232312:T:C	rs12462206	T	C	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr19	46367044	46367045	chr19:46367045:T:C	rs2239380	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr19	46455749	46455750	chr19:46455750:C:A	rs4803953	C	A	c	Sox1.mouse_HMG_2	7	1	-	3.014565291931875	2.857990937097774	CTCTATTGCATTCAT
chr19	46466661	46466662	chr19:46466662:C:T	rs1185960199	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr19	46480836	46480837	chr19:46480837:T:G	rs2288915	T	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr19	46480837	46480838	chr19:46480838:T:C	rs2288914	T	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr19	46602458	46602459	chr19:46602459:G:T	rs73056645	G	T	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr19	46611998	46611999	chr19:46611999:C:T	rs111367721	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr19	46748672	46748673	chr19:46748673:C:G	rs36215245	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr19	46828672	46828673	chr19:46828673:C:A	rs74762079	C	A	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr19	46828702	46828703	chr19:46828703:A:G	rs62136768	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr19	46881241	46881242	chr19:46881242:A:G	rs311360	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr19	47038801	47038802	chr19:47038802:G:A	rs4804014	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr19	47104982	47104983	chr19:47104983:C:T	rs374338785	C	T	C	Sox1.mouse_HMG_2	0	1	-	3.054126368610708	4.058362601245911	GGGATTTTCATTCAT
chr19	47109498	47109499	chr19:47109499:G:A	rs186320157	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr19	47135281	47135282	chr19:47135282:A:T	rs11083862	A	T	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	47307900	47307901	chr19:47307901:C:T	rs186036381	C	T	C	Sox1.mouse_HMG_2	0	1	+	6.999552443181773	6.73360924941234	CGGAATTACATTCTC
chr19	47391251	47391252	chr19:47391252:T:C	rs2694542	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr19	47681499	47681500	chr19:47681500:A:G	rs2914436	A	G	G	Sox1.mouse_HMG_2	1	1	-	2.5379434125364178	-2.1060488949568152	TTGTCTATCAGTCAG
chr19	47809978	47809979	chr19:47809979:A:G	rs6509340	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr19	48258166	48258167	chr19:48258167:C:T	rs10853801	C	T	c	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	48259174	48259175	chr19:48259175:G:A	rs11510310	G	A	g	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr19	48260491	48260492	chr19:48260492:T:C	rs4802451	T	C	T	Sox1.mouse_HMG_2	0	1	-	9.76879564125282	8.76455940861762	ATGAATATCATTAAT
chr19	48330309	48330310	chr19:48330310:T:G	chr19:48330310:T:G	T	G	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr19	48330350	48330351	chr19:48330351:A:G	rs4893	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr19	48355197	48355198	chr19:48355198:C:T	rs394025	C	T	T	Sox1.mouse_HMG_2	10	1	-	3.1720584384174866	-0.9232856241376983	ATAAATATCAGTCGG
chr19	48613989	48613990	chr19:48613990:A:G	rs374886	A	G	G	Sox1.mouse_HMG_2	13	1	+	4.764556604699377	-0.18156108307327154	CCGACTGACAGTCAC
chr19	48735768	48735769	chr19:48735769:T:C	rs418464	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr19	48873149	48873150	chr19:48873150:T:A	rs73589816	T	A	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr19	49097519	49097520	chr19:49097520:A:G	rs2387768	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	49247950	49247951	chr19:49247951:A:T	rs11666240	A	T	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr19	49389244	49389245	chr19:49389245:C:T	rs55689129	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr19	49489996	49489997	chr19:49489997:C:T	rs141468307	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr19	49513221	49513222	chr19:49513222:T:G	rs111981233	T	G	-	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr19	49516113	49516114	chr19:49516114:G:A	rs750417489	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr19	49813466	49813467	chr19:49813467:C:A	chr19:49813467:C:A	C	A	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	49813481	49813482	chr19:49813482:G:A	chr19:49813482:G:A	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.352382344351915	0.7069798113357008	ATGATTTACATTCTA
chr19	49813496	49813497	chr19:49813497:C:T	rs2286948	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr19	49813500	49813501	chr19:49813501:A:C	chr19:49813501:A:C	A	C	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr19	49874885	49874886	chr19:49874886:T:C	rs11083985	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr19	49897906	49897907	chr19:49897907:C:A	rs183544882	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr19	49897907	49897908	chr19:49897908:G:A	rs74512873	G	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr19	49897923	49897924	chr19:49897924:T:G	rs903621939	T	G	T	Sox1.mouse_HMG_2	13	1	-	2.0168544885584243	-4.303861520570923	GTTACTCACATTCAC
chr19	49897948	49897949	chr19:49897949:C:T	rs188033390	C	T	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr19	49955102	49955103	chr19:49955103:G:A	rs73576651	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr19	49955153	49955154	chr19:49955154:C:T	rs114726949	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr19	50136345	50136346	chr19:50136346:T:G	rs56215721	T	G	-	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr19	50140613	50140614	chr19:50140614:G:T	rs183479060	G	T	-	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	50351836	50351837	chr19:50351837:C:T	rs8109909	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr19	50487183	50487184	chr19:50487184:C:T	rs548781381	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr19	50582840	50582841	chr19:50582841:A:C	rs10422130	A	C	N	Sox1.mouse_HMG_2	6	1	+	1.4569926559807356	-2.8954223467076305	ATGAGTACCAGTCGG
chr19	50661153	50661154	chr19:50661154:G:A	rs111483219	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr19	50669528	50669529	chr19:50669529:A:G	rs4802723	A	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	50779992	50779993	chr19:50779993:A:G	rs115435380	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr19	50793880	50793881	chr19:50793881:T:C	rs45533637	T	C	t	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr19	50952458	50952459	chr19:50952459:G:A	rs528198597	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.269556512687903	-0.3758460203283128	GAGACTCACATTCAC
chr19	51107885	51107886	chr19:51107886:C:T	chr19:51107886:C:T	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.2389167352049535	4.11352907792769	CTGACTAGCTGTCAC
chr19	51107895	51107896	chr19:51107896:G:A	rs60598098	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr19	51362981	51362982	chr19:51362982:C:T	rs10410947	C	T	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr19	51659802	51659803	chr19:51659803:A:G	rs7248908	A	G	G	Sox1.mouse_HMG_2	6	1	+	3.106727299209256	1.6665498773406164	TTCAGTACCATTCAC
chr19	51681942	51681943	chr19:51681943:G:C	rs12462233	G	C	G	Sox1.mouse_HMG_2	12	1	-	1.7812510860472668	-5.119197564419097	CTTTATACCATTCAC
chr19	51711313	51711314	chr19:51711314:G:A	rs4801888	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr19	51808241	51808242	chr19:51808242:T:C	rs8111509	T	C	T	Sox1.mouse_HMG_2	7	1	+	3.1013168383346663	3.5622612920417724	CTGAAAATCATTTAA
chr19	51949067	51949068	chr19:51949068:G:A	rs57718486	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr19	52658848	52658849	chr19:52658849:T:C	rs7246133	T	C	N	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr19	52748538	52748539	chr19:52748539:T:C	rs1816083	T	C	t	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr19	52923358	52923359	chr19:52923359:C:T	rs1975043	C	T	c	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr19	52923366	52923367	chr19:52923367:A:C	chr19:52923367:A:C	A	C	a	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr19	52923399	52923400	chr19:52923400:C:T	rs896280728	C	T	c	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr19	53041476	53041477	chr19:53041477:C:T	rs115153916	C	T	c	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr19	53193972	53193973	chr19:53193973:A:G	rs11673508	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr19	53330378	53330379	chr19:53330379:C:A	rs17239357	C	A	N	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr19	53330414	53330415	chr19:53330415:A:C	rs34463842	A	C	N	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr19	53462892	53462893	chr19:53462893:G:T	rs76636894	G	T	g	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr19	53508332	53508333	chr19:53508333:C:T	rs2569589	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr19	53535533	53535534	chr19:53535534:A:C	rs73049596	A	C	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr19	53598906	53598907	chr19:53598907:T:C	rs113582067	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.785933725539219	-1.1228210537760033	ATGAATTTCACTCTT
chr19	53645700	53645701	chr19:53645701:G:A	rs8104521	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr19	53661236	53661237	chr19:53661237:T:C	rs11672417	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.736436223876445	-2.111505354403836	AAGAAATCCATTCAT
chr19	53732623	53732624	chr19:53732624:A:C	rs7246017	A	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	53792933	53792934	chr19:53792934:T:C	rs17273183	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr19	53792951	53792952	chr19:53792952:C:A	rs193025313	C	A	C	Sox1.mouse_HMG_2	7	1	+	2.465041155017155	2.8617258756852246	TTGCATACCAGTCTC
chr19	53880603	53880604	chr19:53880604:C:A	rs111164136	C	A	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr19	53888427	53888428	chr19:53888428:T:A	rs307952	T	A	A	Sox1.mouse_HMG_2	13	1	+	3.499633811471457	6.69399736462975	ATGACCTGCATTCTT
chr19	54205429	54205430	chr19:54205430:G:C	rs12983262	G	C	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr19	54248334	54248335	chr19:54248335:C:G	rs73615986	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr19	54248357	54248358	chr19:54248358:C:G	rs34756386	C	G	C	Sox1.mouse_HMG_2	12	1	+	3.054342356866836	-3.846106293599528	GTGAAATAGATTCAT
chr19	54250238	54250239	chr19:54250239:C:A	rs11668189	C	A	c	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr19	54274139	54274140	chr19:54274140:G:C	rs557629234	G	C	g	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr19	54306410	54306411	chr19:54306411:G:A	rs12972371	G	A	g	Sox1.mouse_HMG_2	0	1	+	1.2375728723396713	2.2418091049748723	GTGAAACCCAGTCAC
chr19	54489605	54489606	chr19:54489606:A:G	rs79543930	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr19	54684446	54684447	chr19:54684447:G:A	rs79111643	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr19	54739948	54739949	chr19:54739949:G:A	rs372551745	G	A	.	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	54739971	54739972	chr19:54739972:T:C	rs643236	T	C	.	Sox1.mouse_HMG_2	10	1	+	1.0155272137685114	-5.83241436451177	CTGATATCCATTCAC
chr19	54741595	54741596	chr19:54741596:C:T	rs601228	C	T	.	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr19	54741636	54741637	chr19:54741637:C:A	rs632031	C	A	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr19	54794830	54794831	chr19:54794831:T:C	rs658919	T	C	.	Sox1.mouse_HMG_2	0	1	-	2.1345260155526735	1.1302897829174712	AGGACTAACATCCAG
chr19	55071332	55071333	chr19:55071333:G:C	rs78105122	G	C	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr19	55116557	55116558	chr19:55116558:G:T	rs75308471	G	T	G	Sox1.mouse_HMG_2	4	1	-	1.9561452630303633	4.338206330897285	CTGACCTGCATTCTC
chr19	55117954	55117955	chr19:55117955:G:A	rs913762804	G	A	G	Sox1.mouse_HMG_2	7	1	+	2.8170346815669376	3.5180895011080118	ATGAATAGCAGACTG
chr19	55117958	55117959	chr19:55117959:A:G	rs73935308	A	G	G	Sox1.mouse_HMG_2	11	1	+	2.8170346815669376	2.8170346815669376	ATGAATAGCAGACTG
chr19	55117966	55117967	chr19:55117967:G:A	rs188180511	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr19	55391955	55391956	chr19:55391956:C:T	rs7260246	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr19	55527421	55527422	chr19:55527422:A:G	rs12463219	A	G	a	Sox1.mouse_HMG_2	7	1	+	3.659336614694533	2.9582817951534572	ACGTATGACATTCAC
chr19	55585172	55585173	chr19:55585173:G:A	rs2864433	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr19	55704994	55704995	chr19:55704995:C:T	rs111350009	C	T	c	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr19	55989818	55989819	chr19:55989819:C:T	rs7250628	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr19	56119288	56119289	chr19:56119289:T:C	rs473953	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.229913805646756	-2.6788409736684637	ATGGATTACATTTAC
chr19	56139998	56139999	chr19:56139999:C:G	rs147824352	C	G	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr19	56218287	56218288	chr19:56218288:T:C	rs8109597	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr19	56221519	56221520	chr19:56221520:T:C	rs142383251	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr19	56222055	56222056	chr19:56222056:C:A	rs34187696	C	A	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr19	56394542	56394543	chr19:56394543:G:A	rs7258010	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr19	56652310	56652311	chr19:56652311:A:G	rs8105823	A	G	G	Sox1.mouse_HMG_2	5	1	+	1.8899789140451937	1.8899789140451937	CTGAAATCCAGTCTC
chr19	56699698	56699699	chr19:56699699:A:G	rs34168891	A	G	a	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr19	56706747	56706748	chr19:56706748:C:G	rs2302375	C	G	c	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr19	56995565	56995566	chr19:56995566:A:T	rs182227691	A	T	A	Sox1.mouse_HMG_2	9	1	+	5.972716153762925	-0.9360386255522951	ATAGATAACATTCAT
chr19	57279244	57279245	chr19:57279245:G:A	rs7247503	G	A	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr19	57350798	57350799	chr19:57350799:A:G	rs862698	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr19	57415452	57415453	chr19:57415453:G:A	rs10412943	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	57721958	57721959	chr19:57721959:C:T	rs34992798	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr19	57723546	57723547	chr19:57723547:T:C	rs9676736	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.497409344150446	-1.4113454351647745	ATAAATGCCATTTAC
chr19	57792996	57792997	chr19:57792997:A:G	rs7254571	A	G	.	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr19	57863853	57863854	chr19:57863854:C:A	rs66515265	C	A	.	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr19	57894991	57894992	chr19:57894992:G:A	rs7246982	G	A	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr19	58146698	58146699	chr19:58146699:C:T	rs34526068	C	T	-	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr19	58311829	58311830	chr19:58311830:G:A	rs58371330	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr19	58311854	58311855	chr19:58311855:T:C	rs61468392	T	C	T	Sox1.mouse_HMG_2	6	1	+	3.1142556801151824	-0.39715388783178873	AGGAATTCCATACAA
chr19	58330494	58330495	chr19:58330495:T:C	rs59874238	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr19	58372794	58372795	chr19:58372795:G:T	rs62116388	G	T	t	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr19	58406207	58406208	chr19:58406208:G:A	rs10406593	G	A	-	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr19	58546831	58546832	chr19:58546832:G:A	rs7249841	G	A	G	Sox1.mouse_HMG_2	2	1	+	2.4877049956629183	-2.157697537353298	GTGACCACCATTCTG
chr19	58590580	58590581	chr19:58590581:C:T	rs62114700	C	T	c	Sox1.mouse_HMG_2	4	1	-	3.869378311021147	10.690791080181222	CTGAGTAAAATTCAA
chr2	175620	175621	chr2:175621:C:T	rs113170946	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	764255	764256	chr2:764256:T:C	rs76036174	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	821384	821385	chr2:821385:T:C	rs34674658	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	821409	821410	chr2:821410:G:A	rs62104831	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	833291	833292	chr2:833292:A:C	rs62104834	A	C	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	856959	856960	chr2:856960:C:T	rs7572005	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	976674	976675	chr2:976675:A:G	rs61246823	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.1013009027805016	-1.5426914047127314	CTGAACAACACTCAT
chr2	1323556	1323557	chr2:1323557:G:A	rs200746342	G	A	-	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	1418599	1418600	chr2:1418600:T:C	rs10207656	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	1626537	1626538	chr2:1626538:A:T	rs11692137	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr2	1638596	1638597	chr2:1638597:A:C	rs6732413	A	C	C	Sox1.mouse_HMG_2	13	1	+	1.798739313336315	-4.5219766957930325	CTGGCTGGCAGTCAC
chr2	1738928	1738929	chr2:1738929:C:T	rs10204174	C	T	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	1826848	1826849	chr2:1826849:A:C	rs13423681	A	C	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	1946367	1946368	chr2:1946368:C:A	rs1469645	C	A	C	Sox1.mouse_HMG_2	14	1	+	4.7733179566689286	4.330220934708978	TTGAATTACATCCTC
chr2	1948803	1948804	chr2:1948804:C:T	rs919718	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	2014619	2014620	chr2:2014620:C:A	rs892013025	C	A	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	2158559	2158560	chr2:2158560:C:T	rs77246738	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	2550929	2550930	chr2:2550930:G:A	rs908354	G	A	G	Sox1.mouse_HMG_2	3	1	-	5.176423140996659	5.176423140996659	CTGCCTTCCATTCAG
chr2	2750930	2750931	chr2:2750931:T:C	rs17038881	T	C	T	Sox1.mouse_HMG_2	0	1	+	7.992970807023637	8.25891400079307	TTGAATTTCATTGAT
chr2	2782039	2782040	chr2:2782040:C:A	rs78286298	C	A	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	2787299	2787300	chr2:2787300:A:G	rs2060485	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	2791416	2791417	chr2:2791417:C:T	rs6718699	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	2825643	2825644	chr2:2825644:T:C	rs114000439	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	3008591	3008592	chr2:3008592:G:C	rs111320708	G	C	G	Sox1.mouse_HMG_2	14	1	-	4.159605147283	3.8811493732179976	TTGAGTTGCATTCTC
chr2	3051180	3051181	chr2:3051181:T:C	rs114027154	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.7251205245042796	-1.0962922446557943	ATGAATTTCTTTCTT
chr2	3077270	3077271	chr2:3077271:A:G	rs6705890	A	G	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	3105610	3105611	chr2:3105611:T:C	rs6712936	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	3152000	3152001	chr2:3152001:G:A	rs138866648	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	3152029	3152030	chr2:3152030:C:T	rs4439992	C	T	c	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	3255062	3255063	chr2:3255063:G:A	rs13015929	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	3322645	3322646	chr2:3322646:A:G	rs11902010	A	G	a	Sox1.mouse_HMG_2	9	1	+	8.514122317495799	1.6053675381805788	ATGAATTCCATTGAC
chr2	3357772	3357773	chr2:3357773:A:C	rs117328810	A	C	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	3369213	3369214	chr2:3369214:T:A	rs62119534	T	A	T	Sox1.mouse_HMG_2	10	1	+	10.435621922131352	3.5876803438510714	ATCAATTTCATTCAT
chr2	3462613	3462614	chr2:3462614:C:T	rs10198978	C	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	3632632	3632633	chr2:3632633:G:A	rs11123560	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	3658391	3658392	chr2:3658392:C:A	rs116080781	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	3780502	3780503	chr2:3780503:T:C	rs17018009	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	3831797	3831798	chr2:3831798:C:T	rs6738578	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	4248626	4248627	chr2:4248627:A:G	rs7576476	A	G	G	Sox1.mouse_HMG_2	14	1	+	9.092163343239578	9.256804591134525	GTGAATGACATTTAA
chr2	4280318	4280319	chr2:4280319:C:A	rs116259344	C	A	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	4551763	4551764	chr2:4551764:A:T	rs13391917	A	T	A	Sox1.mouse_HMG_2	5	1	-	4.457072331658677	-2.451682447656544	CTGAATGTCATCCTT
chr2	4777771	4777772	chr2:4777772:C:T	rs13431987	C	T	C	Sox1.mouse_HMG_2	11	1	-	4.077249879057624	4.077249879057624	GTGACTGCCATGCAA
chr2	5061488	5061489	chr2:5061489:C:T	rs4413134	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	5286128	5286129	chr2:5286129:G:A	rs12479127	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	5472677	5472678	chr2:5472678:T:A	rs6743805	T	A	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	5480819	5480820	chr2:5480820:A:G	rs4669392	A	G	G	Sox1.mouse_HMG_2	0	1	+	3.6862335763262184	2.6819973436910156	ATGAATTACATTAGG
chr2	5494303	5494304	chr2:5494304:T:C	rs17360555	T	C	T	Sox1.mouse_HMG_2	0	1	+	3.7811314471471764	4.047074640916609	TTGAAGCCCATTCAG
chr2	5694914	5694915	chr2:5694915:T:C	rs77558140	T	C	T	Sox1.mouse_HMG_2	0	1	+	5.380948934110447	5.646892127879879	TTGAATACCAGACAG
chr2	6061029	6061030	chr2:6061030:A:G	rs2141007	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	6196566	6196567	chr2:6196567:A:G	rs12692301	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	6470411	6470412	chr2:6470412:T:C	rs306167	T	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	6693108	6693109	chr2:6693109:A:C	rs308002	A	C	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	6798176	6798177	chr2:6798177:A:G	rs4458187	A	G	G	Sox1.mouse_HMG_2	4	1	+	14.10011047382468	7.278697704664607	CTGAATGACATTCAA
chr2	6974152	6974153	chr2:6974153:T:A	rs771254	T	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	7062364	7062365	chr2:7062365:T:G	rs309271	T	G	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	7190355	7190356	chr2:7190356:A:G	rs6755106	A	G	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	7607339	7607340	chr2:7607340:T:C	rs2946753	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	7667113	7667114	chr2:7667114:T:C	rs12615861	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	7867971	7867972	chr2:7867972:A:G	rs142728575	A	G	a	Sox1.mouse_HMG_2	14	1	+	5.517653163922468	5.6822944118174155	GTCAATTGCAGTCAA
chr2	7870340	7870341	chr2:7870341:T:C	rs78580613	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	7970209	7970210	chr2:7970210:G:C	rs141676767	G	C	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	8120370	8120371	chr2:8120371:T:C	rs11687489	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	8154552	8154553	chr2:8154553:C:A	chr2:8154553:C:A	C	A	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	8154552	8154553	chr2:8154553:C:T	rs114207055	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	8154580	8154581	chr2:8154581:G:A	rs74360315	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	8431346	8431347	chr2:8431347:G:A	rs2630720	G	A	A	Sox1.mouse_HMG_2	0	1	-	2.7919581922675802	2.526014998498148	CTGAGTACCAATCAT
chr2	8496720	8496721	chr2:8496721:C:T	rs772925811	C	T	C	Sox1.mouse_HMG_2	2	1	-	2.9102131513478158	-1.7351893816683994	ATGTCTTTCAGTCAC
chr2	8582144	8582145	chr2:8582145:C:A	rs114017263	C	A	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	8637105	8637106	chr2:8637106:G:A	rs139618725	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	8669615	8669616	chr2:8669616:A:G	rs1275937896	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	8679766	8679767	chr2:8679767:G:A	rs77057248	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	8684848	8684849	chr2:8684849:A:G	rs546327466	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	8684856	8684857	chr2:8684857:C:T	rs3900795	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	8986113	8986114	chr2:8986114:A:T	rs12612400	A	T	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	9050565	9050566	chr2:9050566:T:C	rs57396441	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	9050568	9050569	chr2:9050569:A:G	rs10188210	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	9112036	9112037	chr2:9112037:G:A	rs73149724	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	9287014	9287015	chr2:9287015:G:A	rs115705572	G	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	9287813	9287814	chr2:9287814:T:C	rs1276522750	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	9885433	9885434	chr2:9885434:G:A	rs411413	G	A	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	9971089	9971090	chr2:9971090:A:G	rs11883961	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	10010414	10010415	chr2:10010415:G:A	rs1378469550	G	A	G	Sox1.mouse_HMG_2	1	1	-	10.28963561994475	14.933627927437986	ACGAATGACATTCAG
chr2	10046411	10046412	chr2:10046412:C:G	rs576350323	C	G	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	10246283	10246284	chr2:10246284:G:C	rs11688174	G	C	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	10279357	10279358	chr2:10279358:A:G	rs114742456	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr2	10317866	10317867	chr2:10317867:C:G	rs12692401	C	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	10342700	10342701	chr2:10342701:C:T	rs116116221	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	10380660	10380661	chr2:10380661:T:C	rs11690273	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	10460680	10460681	chr2:10460681:C:G	rs73914087	C	G	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	10566361	10566362	chr2:10566362:A:T	rs35454239	A	T	T	Sox1.mouse_HMG_2	4	1	+	8.59935450255538	1.7779417333953074	ATGAAAAGCATTCAA
chr2	10810009	10810010	chr2:10810010:T:C	rs1734448	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	10874026	10874027	chr2:10874027:G:A	rs72781426	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	10874036	10874037	chr2:10874037:A:G	rs149970059	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	10947302	10947303	chr2:10947303:C:T	rs9677245	C	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	10976983	10976984	chr2:10976984:A:G	rs6754539	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	11090259	11090260	chr2:11090260:G:A	rs11686282	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	11105861	11105862	chr2:11105862:T:G	rs55732153	T	G	T	Sox1.mouse_HMG_2	4	1	-	3.0454610879146182	0.6634000200476973	ATGAATAGGGTTCAG
chr2	11111967	11111968	chr2:11111968:T:C	rs13005670	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	11116906	11116907	chr2:11116907:T:C	rs4669693	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	11160742	11160743	chr2:11160743:T:C	rs6432182	T	C	C	Sox1.mouse_HMG_2	13	1	-	9.346821623388339	4.400703935615689	ATGCATACCATTCAC
chr2	11240402	11240403	chr2:11240403:A:C	rs2357996	A	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	11254221	11254222	chr2:11254222:G:A	rs114887242	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	11254226	11254227	chr2:11254227:C:T	rs12479227	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	11273566	11273567	chr2:11273567:C:G	rs12472868	C	G	C	Sox1.mouse_HMG_2	14	1	+	3.728973353101405	3.4505175790364024	GAGACTTTCATTCTC
chr2	11333445	11333446	chr2:11333446:C:T	rs12467103	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	11392227	11392228	chr2:11392228:C:T	rs13001631	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.195963865557237	-1.4484628248247495	ACCAATGGCATTCAG
chr2	11394291	11394292	chr2:11394292:C:T	rs6734190	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	11708560	11708561	chr2:11708561:A:G	rs7573725	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	11712597	11712598	chr2:11712598:C:T	rs7575208	C	T	C	Sox1.mouse_HMG_2	8	1	+	5.658924833210597	0.014498142828611227	TTAACTAACAGTCAG
chr2	11712598	11712599	chr2:11712599:A:G	rs7588803	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.658924833210597	-1.2498299461046227	TTAACTAACAGTCAG
chr2	11933323	11933324	chr2:11933324:G:C	rs7598815	G	C	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	12059715	12059716	chr2:12059716:C:T	rs576121651	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr2	12164956	12164957	chr2:12164957:G:A	rs6722884	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	12174071	12174072	chr2:12174072:T:G	rs13394440	T	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	12452748	12452749	chr2:12452749:T:G	rs149573533	T	G	T	Sox1.mouse_HMG_2	1	1	+	7.540876012904434	2.592412526332625	CTGAATTGCATTAAC
chr2	12491531	12491532	chr2:12491532:T:C	rs4669854	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	12506990	12506991	chr2:12506991:G:T	rs113371461	G	T	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	12613331	12613332	chr2:12613332:C:T	rs1054016621	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	12852303	12852304	chr2:12852304:T:C	rs13396447	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	12951889	12951890	chr2:12951890:A:G	rs779396	A	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	12999954	12999955	chr2:12999955:A:G	rs1516289	A	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	14187475	14187476	chr2:14187476:A:G	rs6432445	A	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	14424943	14424944	chr2:14424944:G:T	rs56139995	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	14522949	14522950	chr2:14522950:C:T	rs4669996	C	T	C	Sox1.mouse_HMG_2	0	1	-	6.419518900985648	7.4237551336208485	GTGAAGAACATTCTT
chr2	14577837	14577838	chr2:14577838:G:A	rs2890478	G	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	14773843	14773844	chr2:14773844:T:C	rs77905257	T	C	T	Sox1.mouse_HMG_2	14	1	-	3.777810712892401	3.9424519607873485	CCGACTTGCATTCTA
chr2	14925651	14925652	chr2:14925652:A:G	rs58474025	A	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	15044042	15044043	chr2:15044043:T:C	rs6711002	T	C	T	Sox1.mouse_HMG_2	13	1	-	8.919484077662569	3.9733663898899216	ATGAACTTCATTCAT
chr2	15642466	15642467	chr2:15642467:C:T	rs807623	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	15642486	15642487	chr2:15642487:C:T	rs183867419	C	T	C	Sox1.mouse_HMG_2	14	1	+	1.8300038393896971	2.704616182112433	CTGAACACCACTCAC
chr2	15642682	15642683	chr2:15642683:A:G	rs807621	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	15664650	15664651	chr2:15664651:G:A	rs144272864	G	A	G	Sox1.mouse_HMG_2	14	1	-	4.426179336222842	5.300791678945578	GTGACTTCAAGTCAC
chr2	15687941	15687942	chr2:15687942:T:C	rs575590042	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	15730117	15730118	chr2:15730118:A:G	rs7572151	A	G	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	15891364	15891365	chr2:15891365:G:A	rs36082346	G	A	G	Sox1.mouse_HMG_2	0	1	+	5.989051921531857	6.9932881541670575	GGGAATTCCATTCTG
chr2	15905940	15905941	chr2:15905941:C:T	rs73915537	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	16105541	16105542	chr2:16105542:C:T	rs80308786	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	16608053	16608054	chr2:16608054:T:G	rs10207081	T	G	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr2	16624049	16624050	chr2:16624050:G:A	rs1024927	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	16624055	16624056	chr2:16624056:C:A	rs1024926	C	A	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	16626109	16626110	chr2:16626110:G:T	rs11892967	G	T	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	16661390	16661391	chr2:16661391:T:C	rs72777961	T	C	T	Sox1.mouse_HMG_2	1	1	+	2.5590157622096052	-2.0849765452836295	ATGCTTTCCATTCAT
chr2	16747387	16747388	chr2:16747388:C:A	rs1722409	C	A	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	16751177	16751178	chr2:16751178:G:A	rs59772038	G	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	17206932	17206933	chr2:17206933:T:C	rs13031329	T	C	t	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	17231814	17231815	chr2:17231815:C:T	rs10171949	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	17251288	17251289	chr2:17251289:A:G	rs13383210	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	17263636	17263637	chr2:17263637:T:G	rs7585992	T	G	g	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	17287460	17287461	chr2:17287461:A:G	rs62125563	A	G	g	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	17519966	17519967	chr2:17519967:G:A	rs11885715	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	17799772	17799773	chr2:17799773:G:C	rs898842	G	C	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	17822570	17822571	chr2:17822571:A:G	rs751908298	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.6075527099115745	-1.0364395975816576	GTCAGTAGCATTCAT
chr2	17827231	17827232	chr2:17827232:C:G	rs7355608	C	G	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	17864970	17864971	chr2:17864971:A:G	rs7582717	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	17916668	17916669	chr2:17916669:G:A	rs12476193	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.400754716761887	-0.2718323869063678	GTGAATAGCATCCTA
chr2	17976750	17976751	chr2:17976751:G:A	rs35627228	G	A	G	Sox1.mouse_HMG_2	1	1	-	3.7903962123386776	8.434388519831915	CCGAATAGCACTCAC
chr2	18320101	18320102	chr2:18320102:G:A	rs1516916	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	18445013	18445014	chr2:18445014:T:C	rs13393878	T	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	18627413	18627414	chr2:18627414:C:T	rs73228526	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	18630126	18630127	chr2:18630127:A:G	rs147806188	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	18630299	18630300	chr2:18630300:A:G	rs16985353	A	G	A	Sox1.mouse_HMG_2	5	1	-	8.407182226778314	1.4984274474630928	CTGAATTGCATCCAT
chr2	18738978	18738979	chr2:18738979:T:C	rs1451607301	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	18762660	18762661	chr2:18762661:T:C	rs7592546	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	18891573	18891574	chr2:18891574:A:G	rs61197957	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	18898420	18898421	chr2:18898421:A:G	rs4832635	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.716899693962244	-2.1310418843180368	CAAAATTTCATTCAG
chr2	19085617	19085618	chr2:19085618:T:C	rs4423564	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	19368673	19368674	chr2:19368674:C:A	rs17441606	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	19532936	19532937	chr2:19532937:G:T	rs9973758	G	T	T	Sox1.mouse_HMG_2	8	1	-	4.446686918610758	-0.40280989690134084	AAGACTTGCATTCTA
chr2	19575843	19575844	chr2:19575844:A:G	rs7424006	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	19768305	19768306	chr2:19768306:C:T	rs10469799	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	19849939	19849940	chr2:19849940:A:G	rs751098	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	19887066	19887067	chr2:19887067:C:T	rs555955056	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	19912068	19912069	chr2:19912069:C:T	rs10182866	C	T	C	Sox1.mouse_HMG_2	14	1	-	5.776089519874686	5.6114482719797385	CTGACTCACATTCTG
chr2	19912078	19912079	chr2:19912079:G:A	rs77400381	G	A	G	Sox1.mouse_HMG_2	4	1	-	5.776089519874686	1.3367378185815342	CTGACTCACATTCTG
chr2	20163904	20163905	chr2:20163905:C:T	rs35135293	C	T	T	Sox1.mouse_HMG_2	12	1	+	3.914357797766997	-0.758229305901258	TTGAATTTCAGACAA
chr2	20355456	20355457	chr2:20355457:T:G	rs11898408	T	G	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	20443194	20443195	chr2:20443195:T:C	rs6715667	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	20504207	20504208	chr2:20504208:A:G	rs13021711	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	20631090	20631091	chr2:20631091:G:C	rs6750073	G	C	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	20631110	20631111	chr2:20631111:A:T	rs6737130	A	T	A	Sox1.mouse_HMG_2	6	1	-	4.872053042123653	5.713058476865048	CTGACTTGCATCCAG
chr2	20692126	20692127	chr2:20692127:A:G	rs340599	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	20728281	20728282	chr2:20728282:T:C	rs10495709	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	20728290	20728291	chr2:20728291:T:C	rs722705	T	C	C	Sox1.mouse_HMG_2	6	1	-	5.290540928261515	3.850363506392876	TTGACTATCATCCAG
chr2	20796865	20796866	chr2:20796866:A:G	rs144345209	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	20868367	20868368	chr2:20868368:C:A	rs114334352	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	20868373	20868374	chr2:20868374:T:C	rs55782366	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	21014913	21014914	chr2:21014914:T:G	rs2854725	T	G	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	21119219	21119220	chr2:21119220:T:C	rs312956	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.775840558739812	2.131848251246577	TTGACTTAGATTCAC
chr2	21146695	21146696	chr2:21146696:T:C	rs312969	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	21314624	21314625	chr2:21314625:T:C	rs219546	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	21396428	21396429	chr2:21396429:C:T	rs11687091	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	21411945	21411946	chr2:21411946:T:C	rs10168561	T	C	C	Sox1.mouse_HMG_2	6	1	-	2.5186949237067555	1.0785175018381168	CTGACAAGCATTCTG
chr2	22017828	22017829	chr2:22017829:C:T	rs373676147	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	22335736	22335737	chr2:22335737:A:G	rs4558612	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	22463142	22463143	chr2:22463143:G:A	rs1509374	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	22929439	22929440	chr2:22929440:C:T	rs17664272	C	T	C	Sox1.mouse_HMG_2	12	1	+	6.322939467511182	1.6503523638429274	TTAAATCCCATTCAC
chr2	23212064	23212065	chr2:23212065:T:C	rs34082031	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	23278464	23278465	chr2:23278465:G:T	rs1438141	G	T	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	23599709	23599710	chr2:23599710:A:G	rs17045677	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.8555707266732693	-1.090546961099379	CTCAATAGCATGCAT
chr2	24012103	24012104	chr2:24012104:T:C	rs2339938	T	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	24141924	24141925	chr2:24141925:A:G	rs13423196	A	G	G	Sox1.mouse_HMG_2	11	1	-	5.730468401242272	-1.178286378072948	AGGAATAACAATCAT
chr2	24237495	24237496	chr2:24237496:T:C	rs1472608076	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.2946583788509027	-3.526754390309169	TGGAATGACATACAT
chr2	24702424	24702425	chr2:24702425:C:T	rs11125751	C	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	24817553	24817554	chr2:24817554:G:A	rs10178420	G	A	A	Sox1.mouse_HMG_2	8	1	-	6.994308676829677	1.349881986447691	ATCACTGACATTCAA
chr2	25003483	25003484	chr2:25003484:G:C	rs12612890	G	C	G	Sox1.mouse_HMG_2	12	1	-	7.51380013744441	0.6133514869780471	CTGACTAATATTCAA
chr2	25018207	25018208	chr2:25018208:T:A	rs4665758	T	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	25700491	25700492	chr2:25700492:A:T	rs2033174	A	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	25700537	25700538	chr2:25700538:G:T	rs11676342	G	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	25894585	25894586	chr2:25894586:T:C	rs13033978	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.467263806895727	-2.441490972419491	GCCAATAGCATTCAA
chr2	25928039	25928040	chr2:25928040:G:C	rs76826407	G	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	26327420	26327421	chr2:26327421:G:A	rs543147259	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	26401028	26401029	chr2:26401029:A:T	rs1864459	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	26498374	26498375	chr2:26498375:C:T	rs6734116	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	26568585	26568586	chr2:26568586:A:C	rs939815	A	C	A	Sox1.mouse_HMG_2	4	1	+	8.574620778520574	6.192559710653649	GTCAATTCCATTCAA
chr2	26588022	26588023	chr2:26588023:G:A	rs76968928	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.713058476865048	0.06863178648306206	CTGACAAGCATTCAG
chr2	26588035	26588036	chr2:26588036:A:C	rs72817133	A	C	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	26755536	26755537	chr2:26755537:G:C	rs73923327	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	26764942	26764943	chr2:26764943:G:A	rs35277048	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	27408374	27408375	chr2:27408375:C:T	rs1010619258	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	27920149	27920150	chr2:27920150:G:T	rs10173848	G	T	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	28239480	28239481	chr2:28239481:G:A	rs59585444	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	28396940	28396941	chr2:28396941:T:A	rs13408204	T	A	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	28480570	28480571	chr2:28480571:G:A	rs139482121	G	A	g	Sox1.mouse_HMG_2	14	1	-	3.020735448885496	3.895347791608232	GTGAATAAGTTTCAC
chr2	28480601	28480602	chr2:28480602:T:C	rs1828239	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	28490638	28490639	chr2:28490639:A:G	rs11682115	A	G	A	Sox1.mouse_HMG_2	13	1	-	6.186064978211385	3.05971252224033	ATGGATTCCATTCTT
chr2	28528037	28528038	chr2:28528038:C:T	rs75978994	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	28577292	28577293	chr2:28577293:T:C	rs373632801	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	28665294	28665295	chr2:28665295:G:A	rs55902327	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	28669249	28669250	chr2:28669250:A:G	rs10192375	A	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	28990541	28990542	chr2:28990542:C:T	rs7567628	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	29073129	29073130	chr2:29073130:C:T	rs201900716	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	29074201	29074202	chr2:29074202:C:T	rs35929540	C	T	C	Sox1.mouse_HMG_2	0	1	+	4.978829986400723	4.712886792631289	CTGAATGCCACTCTT
chr2	29269932	29269933	chr2:29269933:G:A	rs568987993	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	29315544	29315545	chr2:29315545:G:A	rs4666200	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	29443876	29443877	chr2:29443877:T:G	rs533865129	T	G	T	Sox1.mouse_HMG_2	0	1	-	3.4810689408730626	2.8121927351547074	ATGACTATCAGTGAG
chr2	29456596	29456597	chr2:29456597:C:T	rs4346337	C	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	29497352	29497353	chr2:29497353:C:T	rs13407210	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	29602589	29602590	chr2:29602590:C:T	rs144274600	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	29618119	29618120	chr2:29618120:C:T	rs61641759	C	T	C	Sox1.mouse_HMG_2	0	1	+	6.6925690704711265	6.426625876701694	CTGACCAACATTCAC
chr2	29660852	29660853	chr2:29660853:G:A	rs13003648	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	29716242	29716243	chr2:29716243:A:C	rs2541200	A	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	30223505	30223506	chr2:30223506:G:T	rs79713994	G	T	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	30223535	30223536	chr2:30223536:T:A	rs76844524	T	A	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	30380932	30380933	chr2:30380933:C:T	rs6707509	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	30385293	30385294	chr2:30385294:G:A	rs7583194	G	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	30412539	30412540	chr2:30412540:C:T	rs915064045	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	30420944	30420945	chr2:30420945:T:C	rs829699	T	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	30420979	30420980	chr2:30420980:T:G	rs35670804	T	G	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	30437399	30437400	chr2:30437400:A:G	rs17009486	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.4558515328551245	0.5470967535399035	TTGATTGACATTCAC
chr2	30472630	30472631	chr2:30472631:T:A	rs829563	T	A	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	30736499	30736500	chr2:30736500:T:C	rs11889549	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	30754765	30754766	chr2:30754766:C:A	rs1983383	C	A	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	30778567	30778568	chr2:30778568:C:A	rs12995645	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	30787009	30787010	chr2:30787010:T:C	rs1915126	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	30912317	30912318	chr2:30912318:G:T	rs2288101	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	31033155	31033156	chr2:31033156:T:C	chr2:31033156:T:C	T	C	T	Sox1.mouse_HMG_2	5	1	+	2.1644341059605465	-4.7443206733546734	GTGACTGACAGACAC
chr2	31037966	31037967	chr2:31037967:T:A	rs10192472	T	A	T	Sox1.mouse_HMG_2	11	1	+	2.9605772948932456	-3.948177484421974	GTGCATGGCATTCTA
chr2	31073777	31073778	chr2:31073778:A:G	rs2098787	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	31149602	31149603	chr2:31149603:G:A	rs10201005	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	31200576	31200577	chr2:31200577:G:A	rs17011001	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	31200621	31200622	chr2:31200622:G:A	rs143870740	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	31222928	31222929	chr2:31222929:A:G	rs13386968	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	31239506	31239507	chr2:31239507:C:A	rs3769631	C	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	31239507	31239508	chr2:31239508:A:G	rs13428625	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	31271118	31271119	chr2:31271119:G:T	rs7606498	G	T	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	31401624	31401625	chr2:31401625:C:T	chr2:31401625:C:T	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	31411995	31411996	chr2:31411996:T:A	rs45555736	T	A	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	31411998	31411999	chr2:31411999:C:A	rs45486298	C	A	c	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	31711829	31711830	chr2:31711830:C:T	rs7557451	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	31897516	31897517	chr2:31897517:A:G	rs34973007	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.104526148369493	-1.8042286309457287	ATGGATTACATTTAT
chr2	32069416	32069417	chr2:32069417:G:C	rs6758024	G	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	32739185	32739186	chr2:32739186:G:A	rs4952286	G	A	G	Sox1.mouse_HMG_2	10	1	+	5.872273657659058	1.7769295951038746	TTGACTTCCAGTCTG
chr2	32770488	32770489	chr2:32770489:A:G	rs6724076	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	32792111	32792112	chr2:32792112:A:G	rs74779167	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	32882943	32882944	chr2:32882944:C:A	rs4952314	C	A	A	Sox1.mouse_HMG_2	2	1	-	7.790527681636701	0.8938333500139913	CTGGATTACATTCAA
chr2	33123643	33123644	chr2:33123644:C:G	rs218198	C	G	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	33137575	33137576	chr2:33137576:T:G	rs6705263	T	G	T	Sox1.mouse_HMG_2	1	1	+	3.864803259028762	-1.0836602275430463	TTGAGTGCCATTCTC
chr2	33209999	33210000	chr2:33210000:A:T	rs10084248	A	T	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	33210006	33210007	chr2:33210007:T:C	rs975867088	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.164694637075382	-2.7440601422398383	TAGAAAAACATTCAC
chr2	33360925	33360926	chr2:33360926:A:T	rs75067553	A	T	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	33363742	33363743	chr2:33363743:C:T	chr2:33363743:C:T	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	33411797	33411798	chr2:33411798:C:A	rs73926604	C	A	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	33426967	33426968	chr2:33426968:G:A	rs189137839	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	33445935	33445936	chr2:33445936:C:T	rs7603061	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	33506172	33506173	chr2:33506173:A:G	rs17013170	A	G	A	Sox1.mouse_HMG_2	11	1	-	9.743506344056405	2.834751564741184	ATGAATAACGTTCAC
chr2	33522800	33522801	chr2:33522801:C:T	rs72785945	C	T	c	Sox1.mouse_HMG_2	8	1	+	6.591055827728312	0.946629137346325	ATGAATTACATTATT
chr2	33622591	33622592	chr2:33622592:T:C	rs6717058	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	33764784	33764785	chr2:33764785:G:A	rs2030544	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	33764803	33764804	chr2:33764804:G:A	chr2:33764804:G:A	G	A	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	33764803	33764804	chr2:33764804:G:C	rs4597504	G	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	33822029	33822030	chr2:33822030:A:G	rs77075221	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	33848647	33848648	chr2:33848648:G:A	rs2681708	G	A	A	Sox1.mouse_HMG_2	8	1	-	4.443759361584679	-1.2006673287973082	CTGAATCACATACAG
chr2	33848689	33848690	chr2:33848690:G:T	rs993002396	G	T	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	33953686	33953687	chr2:33953687:T:C	rs7568077	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	34287163	34287164	chr2:34287164:G:T	rs114692492	G	T	G	Sox1.mouse_HMG_2	12	1	-	3.0956510980779934	-3.804797552388371	ATGATAAGCATTCAT
chr2	34681234	34681235	chr2:34681235:G:A	rs17015498	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	34915840	34915841	chr2:34915841:C:G	rs113252990	C	G	C	Sox1.mouse_HMG_2	12	1	+	5.330884284602985	-1.5695643658633793	TTGCATCACATTCAT
chr2	35505193	35505194	chr2:35505194:T:G	rs10188049	T	G	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	35548213	35548214	chr2:35548214:A:C	rs77602566	A	C	A	Sox1.mouse_HMG_2	14	1	+	5.021306426277824	5.464403448237774	CTGAAAATCAGTCAA
chr2	35624617	35624618	chr2:35624618:A:G	rs7562096	A	G	A	Sox1.mouse_HMG_2	2	1	+	10.870773641915232	15.516176174931449	ATAAATATCATTCAG
chr2	35789386	35789387	chr2:35789387:G:A	rs11682930	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	35822821	35822822	chr2:35822822:C:T	rs10194358	C	T	C	Sox1.mouse_HMG_2	14	1	+	4.407910549488398	5.2825228922111345	ATGTATGGCATTCTC
chr2	36137655	36137656	chr2:36137656:A:G	rs305177	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr2	36412335	36412336	chr2:36412336:A:G	rs79277126	A	G	A	Sox1.mouse_HMG_2	11	1	-	8.390813092341796	1.4820583130265748	GTGACTTCCATTCTA
chr2	36433332	36433333	chr2:36433333:G:C	rs1477048	G	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	36560848	36560849	chr2:36560849:C:G	rs930520533	C	G	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	36569861	36569862	chr2:36569862:C:A	rs848632	C	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	36664133	36664134	chr2:36664134:G:A	rs76154569	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	36670991	36670992	chr2:36670992:G:A	rs970527492	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	36672175	36672176	chr2:36672176:T:G	rs2110879	T	G	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	36701711	36701712	chr2:36701712:T:C	rs4670158	T	C	C	Sox1.mouse_HMG_2	11	1	+	7.50157995601174	0.5928251766965197	GTGAATTCCCTTCAC
chr2	36701715	36701716	chr2:36701716:C:A	rs74633129	C	A	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	36702077	36702078	chr2:36702078:A:G	rs4670589	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr2	36953063	36953064	chr2:36953064:C:A	rs3770775	C	A	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	36965351	36965352	chr2:36965352:T:C	rs3770774	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	37307767	37307768	chr2:37307768:G:A	rs1477055	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	37349028	37349029	chr2:37349029:A:G	rs1051537168	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	37366099	37366100	chr2:37366100:T:C	rs11903018	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	37376104	37376105	chr2:37376105:A:G	rs7570974	A	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	37377625	37377626	chr2:37377626:G:A	rs4233922	G	A	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	37378042	37378043	chr2:37378043:T:C	rs116192721	T	C	T	Sox1.mouse_HMG_2	6	1	-	7.3614452761894835	5.9212678543208455	ATGACAAACATTCAC
chr2	37388163	37388164	chr2:37388164:A:T	rs73924632	A	T	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	37396150	37396151	chr2:37396151:A:C	rs111778461	A	C	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	37396177	37396178	chr2:37396178:G:A	chr2:37396178:G:A	G	A	G	Sox1.mouse_HMG_2	14	1	+	4.258417519289274	4.093776271394327	GTCAATAAGATTCAG
chr2	37803310	37803311	chr2:37803311:T:C	rs868443	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	37856272	37856273	chr2:37856273:A:G	rs934209	A	G	A	Sox1.mouse_HMG_2	5	1	-	7.389300783676039	0.48054600436081685	ATAAATGTCATTCTT
chr2	37871947	37871948	chr2:37871948:C:A	rs149508338	C	A	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	37905084	37905085	chr2:37905085:A:G	rs13016074	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	38058283	38058284	chr2:38058284:T:C	rs77275361	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	38347751	38347752	chr2:38347752:T:C	rs72902192	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	38383868	38383869	chr2:38383869:G:A	rs10182455	G	A	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	38486025	38486026	chr2:38486026:G:T	rs74687803	G	T	G	Sox1.mouse_HMG_2	14	1	-	8.90250090931501	8.45940388735506	ATGAAATACATTCAC
chr2	38673267	38673268	chr2:38673268:C:G	rs58902700	C	G	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	38729804	38729805	chr2:38729805:A:G	rs2272445	A	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	38822998	38822999	chr2:38822999:A:C	rs3770681	A	C	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	39104951	39104952	chr2:39104952:A:C	rs2168043	A	C	A	Sox1.mouse_HMG_2	6	1	-	8.91456135700752	8.315389369880277	ATTAATTACATTCAC
chr2	39506483	39506484	chr2:39506484:G:A	rs17466784	G	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	39664719	39664720	chr2:39664720:T:C	rs79845277	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	39728229	39728230	chr2:39728230:T:C	rs112712020	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	39743368	39743369	chr2:39743369:G:C	rs17024299	G	C	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	39910052	39910053	chr2:39910053:T:C	rs80303798	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	40208425	40208426	chr2:40208426:A:G	rs452138	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	40228145	40228146	chr2:40228146:A:G	rs140467253	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	40281078	40281079	chr2:40281079:T:G	rs115265575	T	G	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	40349606	40349607	chr2:40349607:A:G	rs13031340	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	40376564	40376565	chr2:40376565:G:A	rs111282761	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	40405206	40405207	chr2:40405207:A:G	rs10490043	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	40474100	40474101	chr2:40474101:C:T	rs78461463	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	40579197	40579198	chr2:40579198:A:G	rs4952421	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	40613999	40614000	chr2:40614000:A:G	rs42796	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	40754013	40754014	chr2:40754014:A:C	rs1379037	A	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	40797381	40797382	chr2:40797382:T:C	rs11680340	T	C	t	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	41075626	41075627	chr2:41075627:G:T	rs10490374	G	T	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	41079226	41079227	chr2:41079227:T:C	rs10169208	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	41112218	41112219	chr2:41112219:T:C	rs13017324	T	C	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	41614995	41614996	chr2:41614996:A:G	rs2163049	A	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	41719928	41719929	chr2:41719929:A:G	rs11896329	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	41719977	41719978	chr2:41719978:A:C	rs11896334	A	C	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	41727789	41727790	chr2:41727790:T:C	rs13036078	T	C	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	41860160	41860161	chr2:41860161:G:A	rs142887130	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	41907493	41907494	chr2:41907494:G:C	rs2374343	G	C	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	41928662	41928663	chr2:41928663:A:G	rs114479677	A	G	A	Sox1.mouse_HMG_2	0	1	-	7.689225735762218	7.955168929531649	TTGAAATACATTCAG
chr2	41928682	41928683	chr2:41928683:A:C	rs17772955	A	C	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	41934690	41934691	chr2:41934691:G:A	rs72967855	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	41934708	41934709	chr2:41934709:G:C	rs78477201	G	C	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	41948142	41948143	chr2:41948143:A:G	rs140645331	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	42010203	42010204	chr2:42010204:T:C	rs13030802	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	42579597	42579598	chr2:42579598:A:G	rs10187433	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	42603024	42603025	chr2:42603025:A:G	rs6544574	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	42806790	42806791	chr2:42806791:G:T	rs72801659	G	T	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	42843766	42843767	chr2:42843767:T:A	rs72801667	T	A	T	Sox1.mouse_HMG_2	9	1	-	5.31145263548865	-1.5973021438265702	ATGAATTCCATCCTC
chr2	42913793	42913794	chr2:42913794:A:T	rs7582755	A	T	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	42913820	42913821	chr2:42913821:C:T	rs7609363	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	42960660	42960661	chr2:42960661:G:A	rs12476091	G	A	G	Sox1.mouse_HMG_2	2	1	+	2.914491901370347	-1.730910631645871	CAGAAATCCATTCAG
chr2	42960674	42960675	chr2:42960675:A:G	rs892386800	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	43048231	43048232	chr2:43048232:C:T	rs112812240	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	43081865	43081866	chr2:43081866:G:A	rs774476863	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	43087704	43087705	chr2:43087705:C:T	rs1002796	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	43156169	43156170	chr2:43156170:A:G	rs536396059	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	43436624	43436625	chr2:43436625:T:C	rs80261344	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	43440325	43440326	chr2:43440326:T:C	rs28700209	T	C	T	Sox1.mouse_HMG_2	4	1	-	6.965922385293766	0.14450961613369395	GTAAATTACAGTCAA
chr2	43901772	43901773	chr2:43901773:C:T	rs4953032	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr2	43950394	43950395	chr2:43950395:A:G	rs72877192	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.999049271707009	-2.8223634974530616	ATCAATTGGATTCAC
chr2	43950420	43950421	chr2:43950421:C:T	rs59338949	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	44050496	44050497	chr2:44050497:T:C	rs28542051	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.189876615507754	-0.7562410722648942	TTTAATCACATTCAG
chr2	44181780	44181781	chr2:44181781:C:G	rs10199294	C	G	c	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	44343089	44343090	chr2:44343090:A:G	rs80279117	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	44351338	44351339	chr2:44351339:T:C	rs148747207	T	C	T	Sox1.mouse_HMG_2	0	1	+	6.87737970925403	7.143322903023463	TTAAATACCATTTAT
chr2	44351339	44351340	chr2:44351340:T:C	rs114976582	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.87737970925403	2.233387401760796	TTAAATACCATTTAT
chr2	44604813	44604814	chr2:44604814:T:C	rs17390029	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	44683273	44683274	chr2:44683274:T:C	rs343974	T	C	C	Sox1.mouse_HMG_2	7	1	+	4.129296860023405	4.590241313730512	ATGAGTATGATTCAT
chr2	44977693	44977694	chr2:44977694:T:G	rs532628	T	G	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	45042682	45042683	chr2:45042683:A:G	rs6544780	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	45171959	45171960	chr2:45171960:C:G	rs80121466	C	G	G	Sox1.mouse_HMG_2	6	1	+	2.7305744994361154	5.642812080255843	ATGACACACATTCAG
chr2	45175431	45175432	chr2:45175432:A:C	rs11125005	A	C	A	Sox1.mouse_HMG_2	11	1	-	2.655863428770001	-4.2528913505452195	CTTAAAACCATTCAT
chr2	45350103	45350104	chr2:45350104:A:G	rs11689571	A	G	A	Sox1.mouse_HMG_2	9	1	+	12.902886010182774	5.994131230867554	GTGACTTCCATTCAT
chr2	45453232	45453233	chr2:45453233:A:G	chr2:45453233:A:G	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	45804402	45804403	chr2:45804403:C:A	rs62127182	C	A	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	45826873	45826874	chr2:45826874:A:G	rs4953266	A	G	a	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	45832133	45832134	chr2:45832134:G:A	rs6726221	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	45945971	45945972	chr2:45945972:A:T	rs73926118	A	T	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	46046147	46046148	chr2:46046148:T:A	rs78631698	T	A	T	Sox1.mouse_HMG_2	4	1	-	3.1164214476976086	-3.704991321462464	ATGAATCCCAGCCAT
chr2	46067671	46067672	chr2:46067672:T:C	rs12712962	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	46067709	46067710	chr2:46067710:C:A	rs6730511	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	46076636	46076637	chr2:46076637:A:G	rs62129019	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	46164867	46164868	chr2:46164868:A:G	rs374763638	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	46307715	46307716	chr2:46307716:G:A	rs11903618	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	46423081	46423082	chr2:46423082:C:T	rs4953369	C	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	46423104	46423105	chr2:46423105:T:C	rs4953370	T	C	T	Sox1.mouse_HMG_2	0	1	-	2.4988800451080535	1.494643812472855	ATGAATACCAAACAC
chr2	46442567	46442568	chr2:46442568:A:G	rs2053766	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	46442595	46442596	chr2:46442596:G:A	rs4366955	G	A	A	Sox1.mouse_HMG_2	4	1	-	3.619055276358087	-0.8202964249350628	CTGACTGCCATTTTG
chr2	46469215	46469216	chr2:46469216:A:T	rs4952827	A	T	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	46469231	46469232	chr2:46469232:T:C	rs78538401	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.9589548099262215	-0.9497999693889979	CTGCATTCCAGTCAT
chr2	46478875	46478876	chr2:46478876:G:A	rs13033917	G	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	46719585	46719586	chr2:46719586:G:A	rs550108435	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	46887443	46887444	chr2:46887444:A:C	rs55759365	A	C	a	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	46898370	46898371	chr2:46898371:G:A	rs72886624	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	46916556	46916557	chr2:46916557:C:A	chr2:46916557:C:A	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	46937828	46937829	chr2:46937829:G:A	rs10202814	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	46967899	46967900	chr2:46967900:G:A	chr2:46967900:G:A	G	A	G	Sox1.mouse_HMG_2	7	1	+	8.117862554985344	8.818917374526421	ATGAATTGCATTTTT
chr2	46989641	46989642	chr2:46989642:A:G	rs1529774	A	G	G	Sox1.mouse_HMG_2	7	1	+	6.925412500740025	6.224357681198949	TTGAAGGACATTCAA
chr2	47076955	47076956	chr2:47076956:A:G	rs17036229	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	47270536	47270537	chr2:47270537:C:T	rs10168183	C	T	C	Sox1.mouse_HMG_2	0	1	-	5.9764770858217515	6.980713318456954	GAGAATCCCATTCAG
chr2	47288123	47288124	chr2:47288124:G:T	rs13412502	G	T	T	Sox1.mouse_HMG_2	13	1	+	4.606440072620066	6.358194207234422	CTGAAGACCATTCGT
chr2	47302046	47302047	chr2:47302047:G:A	rs57409646	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	47361197	47361198	chr2:47361198:C:T	rs79359733	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	47698280	47698281	chr2:47698281:T:C	rs374757578	T	C	T	Sox1.mouse_HMG_2	11	1	+	3.2875941323404114	-3.621160646974808	AGGACTAACTTTCAT
chr2	47698288	47698289	chr2:47698289:G:T	rs369837612	G	T	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	47716308	47716309	chr2:47716309:G:A	rs61637835	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	47737308	47737309	chr2:47737309:G:T	rs72809580	G	T	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	48270534	48270535	chr2:48270535:G:A	rs528516276	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	48292217	48292218	chr2:48292218:A:G	rs11687708	A	G	A	Sox1.mouse_HMG_2	10	1	-	7.006673592351612	0.15873201407133186	ATGACTTCCATTAAT
chr2	48331120	48331121	chr2:48331121:A:C	rs6545031	A	C	A	Sox1.mouse_HMG_2	7	1	-	2.7708972975562616	2.9274716523903623	CTGAATATCTTTCCT
chr2	48575217	48575218	chr2:48575218:A:G	rs11676150	A	G	A	Sox1.mouse_HMG_2	9	1	+	6.70149765215304	-0.20725712716218114	CTGAATAATATTCTA
chr2	48651306	48651307	chr2:48651307:T:A	rs11679449	T	A	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	48865769	48865770	chr2:48865770:C:T	rs12614293	C	T	C	Sox1.mouse_HMG_2	13	1	+	3.4227903349270594	6.549142790898114	ATGCATAACATTCCC
chr2	49110657	49110658	chr2:49110658:C:T	rs17038242	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	49569550	49569551	chr2:49569551:A:G	rs7595953	A	G	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	49865622	49865623	chr2:49865623:T:C	rs10495985	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	49979593	49979594	chr2:49979594:T:C	rs2882594	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	50379503	50379504	chr2:50379504:T:C	rs7564130	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	50492425	50492426	chr2:50492426:T:C	rs10205639	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	50546988	50546989	chr2:50546989:G:A	rs114448604	G	A	G	Sox1.mouse_HMG_2	12	1	-	2.3084429541606504	-2.3641441495076045	GTGTACACCATTCAT
chr2	50611456	50611457	chr2:50611457:T:C	rs77169385	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	50749346	50749347	chr2:50749347:T:G	rs3901491	T	G	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	50782699	50782700	chr2:50782700:G:C	rs34591327	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	50855764	50855765	chr2:50855765:T:C	rs6751172	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	51004721	51004722	chr2:51004722:C:A	rs34684671	C	A	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	51145621	51145622	chr2:51145622:G:A	rs72830225	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	51740105	51740106	chr2:51740106:A:G	rs17863688	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	52113615	52113616	chr2:52113616:A:G	rs73930681	A	G	A	Sox1.mouse_HMG_2	0	1	-	5.69301161615679	5.958954809926222	TTGAATTCCTGTCAT
chr2	52335331	52335332	chr2:52335332:C:T	rs2552321	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	52704993	52704994	chr2:52704994:T:C	rs6738153	T	C	T	Sox1.mouse_HMG_2	4	1	-	7.668595914698826	0.8471831455387532	ATCAATACCATTCTC
chr2	52730369	52730370	chr2:52730370:T:C	rs1168239	T	C	-	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	52959718	52959719	chr2:52959719:C:T	rs73931757	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	52997262	52997263	chr2:52997263:T:C	rs4672154	T	C	T	Sox1.mouse_HMG_2	6	1	-	2.281851956390197	0.8416745345215578	ATGATTAGCAATCAC
chr2	53131066	53131067	chr2:53131067:G:A	rs13414722	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	53243386	53243387	chr2:53243387:C:A	rs889856	C	A	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	53243695	53243696	chr2:53243696:T:C	rs1364681	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	53313555	53313556	chr2:53313556:A:C	rs11895925	A	C	A	Sox1.mouse_HMG_2	8	1	+	4.923053144584375	9.772549960096475	ATTAATATAATTCAT
chr2	53366718	53366719	chr2:53366719:T:C	rs10205628	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	53456156	53456157	chr2:53456157:G:A	rs111515694	G	A	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	53456171	53456172	chr2:53456172:C:G	rs35090707	C	G	G	Sox1.mouse_HMG_2	6	1	-	2.9216374855141907	0.009399904694464056	ATGATTGCCAGTCTT
chr2	53512909	53512910	chr2:53512910:G:T	rs7597009	G	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	53601272	53601273	chr2:53601273:T:C	rs734295	T	C	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	53670113	53670114	chr2:53670114:A:G	rs80029529	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	53767355	53767356	chr2:53767356:A:G	rs3755114	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	53886834	53886835	chr2:53886835:A:G	rs186231830	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	54423427	54423428	chr2:54423428:G:A	rs190229385	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	54523341	54523342	chr2:54523342:A:G	rs150461019	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.922540394919735	-1.986214384395486	TTTACTTCCATTCAG
chr2	54523353	54523354	chr2:54523354:G:A	rs74890983	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	54540016	54540017	chr2:54540017:A:G	rs74505378	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	54559889	54559890	chr2:54559890:G:A	rs529507712	G	A	G	Sox1.mouse_HMG_2	8	1	-	6.106045768938162	0.4616190785561759	ATGAAAAACATTCTA
chr2	54574291	54574292	chr2:54574292:C:T	rs114335347	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	54635558	54635559	chr2:54635559:A:G	rs113152566	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	54665591	54665592	chr2:54665592:C:T	rs75844209	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	54742728	54742729	chr2:54742729:C:T	rs143400888	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	54900077	54900078	chr2:54900078:G:T	rs112243857	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	54905012	54905013	chr2:54905013:T:C	rs534623475	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	54924302	54924303	chr2:54924303:G:A	rs4671233	G	A	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	55421201	55421202	chr2:55421202:A:G	rs3762512	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.517414608934756	-0.1265776985584769	ATTAATGACATTTAT
chr2	55520113	55520114	chr2:55520114:A:C	chr2:55520114:A:C	A	C	A	Sox1.mouse_HMG_2	13	1	+	3.557352702075132	-2.763363307054215	AGGAATTCCTTTCAC
chr2	55861531	55861532	chr2:55861532:T:A	rs11694213	T	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	55914962	55914963	chr2:55914963:G:A	rs4380284	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	56012859	56012860	chr2:56012860:C:T	rs6741589	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	56315603	56315604	chr2:56315604:C:A	rs1978376	C	A	A	Sox1.mouse_HMG_2	7	1	-	2.8807128643907283	2.7241385095566275	TGGAATAGCATACAG
chr2	56387126	56387127	chr2:56387127:T:C	rs4672113	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	56387163	56387164	chr2:56387164:G:C	rs4672114	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	56503752	56503753	chr2:56503753:G:C	rs747713	G	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	56580465	56580466	chr2:56580466:A:G	rs59956872	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	56588796	56588797	chr2:56588797:T:A	rs75746807	T	A	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	56754841	56754842	chr2:56754842:A:C	rs75562829	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	56821604	56821605	chr2:56821605:A:G	rs4561703	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	57164009	57164010	chr2:57164010:T:G	rs17798206	T	G	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	57178298	57178299	chr2:57178299:A:G	rs1991124	A	G	A	Sox1.mouse_HMG_2	13	1	+	9.821836455162583	4.875718767389936	CTAAATTCCATTCAG
chr2	57386159	57386160	chr2:57386160:G:C	rs1119578	G	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	57692701	57692702	chr2:57692702:G:C	rs137873961	G	C	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	58006994	58006995	chr2:58006995:C:G	rs72808498	C	G	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	58107103	58107104	chr2:58107104:G:A	rs13033987	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	58138214	58138215	chr2:58138215:A:C	rs716758	A	C	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	58261759	58261760	chr2:58261760:T:G	rs56394605	T	G	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	58533504	58533505	chr2:58533505:T:G	rs10490086	T	G	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	58601268	58601269	chr2:58601269:G:A	rs17049585	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	58985051	58985052	chr2:58985052:G:A	rs11692083	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	59083581	59083582	chr2:59083582:T:C	rs144229000	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	59286696	59286697	chr2:59286697:T:G	rs10169309	T	G	T	Sox1.mouse_HMG_2	6	1	+	5.672381237389359	5.073209250262115	CTGAATTCCAGTCCC
chr2	59566359	59566360	chr2:59566360:G:A	rs2674078	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	59909391	59909392	chr2:59909392:T:C	rs73932454	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	59997193	59997194	chr2:59997194:A:T	rs6731782	A	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	60320431	60320432	chr2:60320432:A:G	rs11125833	A	G	G	Sox1.mouse_HMG_2	10	1	-	9.108237046319386	2.2602954680391076	CTGAACTACATTCAT
chr2	60603901	60603902	chr2:60603902:T:C	rs34111002	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.067567051725967	0.1214493639533184	ATGAATAGATTTCAT
chr2	60603928	60603929	chr2:60603929:G:A	rs13406977	G	A	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	60948937	60948938	chr2:60948938:T:G	rs2278300	T	G	G	Sox1.mouse_HMG_2	3	1	-	3.0454610879146187	-3.8632936914006004	ATGAAGAGGATTCAG
chr2	61226923	61226924	chr2:61226924:T:A	rs3087777	T	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	61898943	61898944	chr2:61898944:G:A	rs139365079	G	A	g	Sox1.mouse_HMG_2	6	1	+	3.334364226913663	4.774541648782303	TTGAAAGCCATTCTA
chr2	64031143	64031144	chr2:64031144:A:C	rs73935051	A	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	64402854	64402855	chr2:64402855:T:G	rs59647975	T	G	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	64724147	64724148	chr2:64724148:G:A	rs17029244	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	64730378	64730379	chr2:64730379:T:C	rs10185499	T	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	64730548	64730549	chr2:64730549:C:T	rs17029275	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	64942799	64942800	chr2:64942800:G:A	rs35323004	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	64954118	64954119	chr2:64954119:A:C	rs6725785	A	C	A	Sox1.mouse_HMG_2	3	1	+	7.6398929652488015	0.7311381859335823	ATCACTTCCATTCAC
chr2	64987605	64987606	chr2:64987606:T:C	rs12615528	T	C	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	65163148	65163149	chr2:65163149:C:T	rs12470270	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	65226786	65226787	chr2:65226787:T:C	rs34813149	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	65265193	65265194	chr2:65265194:A:G	rs80078324	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	65265205	65265206	chr2:65265206:A:G	rs6752683	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.053754513446436	-1.8550002658687839	ATTACTAACATTCTT
chr2	65275975	65275976	chr2:65275976:T:C	rs4143571	T	C	.	Sox1.mouse_HMG_2	9	1	-	4.72862676255064	-2.1801280167645802	ATGAACTGCATTCTG
chr2	65491781	65491782	chr2:65491782:C:T	rs934735	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	65547327	65547328	chr2:65547328:G:C	rs3843340	G	C	G	Sox1.mouse_HMG_2	12	1	-	2.643802981077493	-4.25664566938887	CTGAAAACCATCCAT
chr2	65567458	65567459	chr2:65567459:G:C	rs1641481	G	C	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr2	65795352	65795353	chr2:65795353:C:T	rs10496129	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	65931278	65931279	chr2:65931279:C:G	rs2194781	C	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	65949930	65949931	chr2:65949931:T:G	rs2052669	T	G	G	Sox1.mouse_HMG_2	0	1	-	7.3614452761894835	6.6925690704711265	ATGACAAACATTCAC
chr2	65974596	65974597	chr2:65974597:T:C	rs6716270	T	C	c	Sox1.mouse_HMG_2	13	1	+	3.9824513190924824	0.856098863121428	CTGATTTGCATTCTA
chr2	66305999	66306000	chr2:66306000:C:T	chr2:66306000:C:T	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	66430669	66430670	chr2:66430670:C:T	rs10200708	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	66447519	66447520	chr2:66447520:A:G	rs79238382	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	66457811	66457812	chr2:66457812:G:A	rs10865353	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	66459463	66459464	chr2:66459464:T:C	rs6727704	T	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	66753264	66753265	chr2:66753265:C:T	rs76091893	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	66889254	66889255	chr2:66889255:T:A	rs77060566	T	A	t	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	67072555	67072556	chr2:67072556:T:C	rs112325268	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	67187614	67187615	chr2:67187615:G:T	rs12471935	G	T	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	67798261	67798262	chr2:67798262:C:G	rs1367479	C	G	C	Sox1.mouse_HMG_2	14	1	-	3.511940438273675	3.7903962123386776	CAGAATAGCACTCAG
chr2	67798276	67798277	chr2:67798277:C:T	rs528808031	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr2	67802570	67802571	chr2:67802571:G:A	rs7602687	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	67841870	67841871	chr2:67841871:T:C	rs80122822	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.059750556832283	-2.849004222482938	CTGCATTGCATTCTG
chr2	67851846	67851847	chr2:67851847:A:G	rs966819	A	G	G	Sox1.mouse_HMG_2	0	1	+	4.9158926165298515	3.911656383894649	AGGAATGCCATTTAG
chr2	67895096	67895097	chr2:67895097:C:G	rs6546339	C	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	68212035	68212036	chr2:68212036:C:A	rs4296409	C	A	A	Sox1.mouse_HMG_2	13	1	-	4.843056011957608	6.594810146571963	ATTAATTACATTCGT
chr2	68943583	68943584	chr2:68943584:G:C	rs138759399	G	C	g	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	68943614	68943615	chr2:68943615:C:G	rs186979887	C	G	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	68943621	68943622	chr2:68943622:G:T	chr2:68943622:G:T	G	T	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	69128813	69128814	chr2:69128814:G:A	rs75430990	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	69138665	69138666	chr2:69138666:A:G	rs7561207	A	G	G	Sox1.mouse_HMG_2	7	1	+	4.178693856081878	3.477639036540802	ATAACTAACATTCCT
chr2	69163485	69163486	chr2:69163486:A:T	rs72827676	A	T	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	69388236	69388237	chr2:69388237:G:C	rs543528783	G	C	g	Sox1.mouse_HMG_2	8	1	-	6.01139823472523	0.29286357218952136	ATGAACAGCAGTCAG
chr2	69594383	69594384	chr2:69594384:T:C	rs77119032	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	69594435	69594436	chr2:69594436:G:A	rs7569145	G	A	a	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	69660501	69660502	chr2:69660502:C:T	rs4452174	C	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	69683648	69683649	chr2:69683649:T:C	chr2:69683649:T:C	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	69911971	69911972	chr2:69911972:C:T	rs72904954	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	69914088	69914089	chr2:69914089:A:C	rs80310084	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	69980554	69980555	chr2:69980555:G:A	rs138705909	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	69980601	69980602	chr2:69980602:C:A	rs1986392	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	70019204	70019205	chr2:70019205:A:C	rs74263598	A	C	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	70181536	70181537	chr2:70181537:G:A	rs1311824476	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	70431978	70431979	chr2:70431979:G:A	rs62149591	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	70432152	70432153	chr2:70432153:A:G	rs148100377	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	70782460	70782461	chr2:70782461:G:C	rs6546629	G	C	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	70785601	70785602	chr2:70785602:C:G	rs7566476	C	G	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	70794995	70794996	chr2:70794996:C:G	rs116022325	C	G	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	70931005	70931006	chr2:70931006:T:A	rs116508049	T	A	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	70931044	70931045	chr2:70931045:T:C	rs34467783	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	70982873	70982874	chr2:70982874:C:T	rs75754226	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	71176050	71176051	chr2:71176051:G:C	rs370068	G	C	.	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	71209008	71209009	chr2:71209009:G:A	rs2418895	G	A	g	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	71261813	71261814	chr2:71261814:G:T	rs2609505	G	T	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	71277978	71277979	chr2:71277979:C:G	rs1458870	C	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	71337015	71337016	chr2:71337016:A:T	rs74678666	A	T	A	Sox1.mouse_HMG_2	6	1	+	10.405629312101302	9.564623877359905	CTGACTAACAGTCAA
chr2	71516615	71516616	chr2:71516616:G:C	rs11898708	G	C	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	71893028	71893029	chr2:71893029:A:G	rs17007566	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	72008557	72008558	chr2:72008558:T:C	rs4405788	T	C	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	72129319	72129320	chr2:72129320:G:T	rs707718	G	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	72166898	72166899	chr2:72166899:C:T	rs1387	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	72166938	72166939	chr2:72166939:A:G	rs77198765	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	72167763	72167764	chr2:72167764:A:G	rs194242	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	72826149	72826150	chr2:72826150:A:G	rs76942051	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	72841075	72841076	chr2:72841076:T:A	rs67927720	T	A	T	Sox1.mouse_HMG_2	1	1	+	3.970809378214862	-0.6731829292783703	GTGACTTTGAGTCAT
chr2	72845598	72845599	chr2:72845599:C:T	rs60584321	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	73069549	73069550	chr2:73069550:G:A	rs141115834	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	73157293	73157294	chr2:73157294:G:A	rs59979991	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	73237679	73237680	chr2:73237680:T:C	rs10207625	T	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr2	73738959	73738960	chr2:73738960:G:A	rs2421676	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	73828569	73828570	chr2:73828570:T:C	rs17434855	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	73882893	73882894	chr2:73882894:A:G	rs10519327	A	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	73896699	73896700	chr2:73896700:C:T	rs831537	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	74008711	74008712	chr2:74008712:G:T	rs6751551	G	T	G	Sox1.mouse_HMG_2	2	1	+	5.041694065753927	-1.8550002658687839	ATGACTAACTTTCTT
chr2	74012387	74012388	chr2:74012388:G:A	rs4270374	G	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	74023653	74023654	chr2:74023654:C:G	rs6546887	C	G	G	Sox1.mouse_HMG_2	8	1	+	2.0884655983547185	-3.630069064180989	GTGACTTCCAGACAG
chr2	74093407	74093408	chr2:74093408:C:T	rs766655905	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	74093425	74093426	chr2:74093426:T:C	rs138405380	T	C	T	Sox1.mouse_HMG_2	7	1	+	3.1798286587435496	3.6407731124506566	GTGACTATCATCCTT
chr2	74714922	74714923	chr2:74714923:C:T	rs205643	C	T	C	Sox1.mouse_HMG_2	0	1	+	5.72441678530467	5.458473591535237	CTAAATTGCATTCGT
chr2	74850549	74850550	chr2:74850550:A:G	rs3771784	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	75045159	75045160	chr2:75045160:A:C	rs774436241	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	75326874	75326875	chr2:75326875:G:A	rs2058699	G	A	a	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	75326905	75326906	chr2:75326906:T:C	rs7565730	T	C	t	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	75354560	75354561	chr2:75354561:A:G	rs59141372	A	G	A	Sox1.mouse_HMG_2	13	1	-	2.5359557174988607	-0.5903967384721941	CTGACTGCCTTTCTT
chr2	75375547	75375548	chr2:75375548:T:G	rs60460340	T	G	T	Sox1.mouse_HMG_2	1	1	+	3.4563972429084013	-1.492066243663409	ATGAATTACATCCCT
chr2	75378412	75378413	chr2:75378413:A:G	rs6732139	A	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	75574318	75574319	chr2:75574319:C:G	rs192916729	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	75574354	75574355	chr2:75574355:G:C	rs11888619	G	C	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	75853721	75853722	chr2:75853722:C:T	rs80244538	C	T	C	Sox1.mouse_HMG_2	7	1	-	3.7113974834755346	4.412452303016611	GGGAATTGCATTCCT
chr2	75994069	75994070	chr2:75994070:T:G	rs172745	T	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	76130688	76130689	chr2:76130689:G:C	rs730148	G	C	G	Sox1.mouse_HMG_2	8	1	-	4.432066125003438	-1.2864685375322713	AAGAATTGCCTTCAT
chr2	76598067	76598068	chr2:76598068:C:T	rs1850914	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	76641096	76641097	chr2:76641097:A:G	rs79944402	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	76669156	76669157	chr2:76669157:T:C	rs11682001	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	76721677	76721678	chr2:76721678:A:T	rs10865426	A	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	76920553	76920554	chr2:76920554:T:A	rs13385839	T	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	76985744	76985745	chr2:76985745:G:A	rs116226981	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	77028304	77028305	chr2:77028305:C:G	rs55800138	C	G	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	77028327	77028328	chr2:77028328:G:A	rs17013625	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr2	77866485	77866486	chr2:77866486:T:C	rs75071938	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	77889812	77889813	chr2:77889813:C:A	rs7598535	C	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	78614651	78614652	chr2:78614652:T:C	rs17040590	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	78912162	78912163	chr2:78912163:G:A	rs60283164	G	A	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	79041086	79041087	chr2:79041087:C:A	rs283843	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	79071237	79071238	chr2:79071238:C:A	rs1448213	C	A	a	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	79071258	79071259	chr2:79071259:A:G	rs72929788	A	G	a	Sox1.mouse_HMG_2	4	1	+	3.6669213852605513	-3.1544913838995217	GTGAATAACAGCCTT
chr2	79223938	79223939	chr2:79223939:C:T	rs1434197	C	T	T	Sox1.mouse_HMG_2	2	1	-	3.45051558481862	-1.1948869481975972	CTGAATTAGAATCAT
chr2	79328823	79328824	chr2:79328824:C:T	rs72917286	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.967043871158551	0.32164133814233564	CCGACTTCCAGTCAC
chr2	79515106	79515107	chr2:79515107:A:G	rs72921156	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.7808143166229455	-3.0671272616573364	TGGAATTGCATTCCT
chr2	79935923	79935924	chr2:79935924:A:G	rs535547236	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	80145442	80145443	chr2:80145443:T:C	rs1484461	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	80145460	80145461	chr2:80145461:A:G	rs6723225	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.926767398887125	-2.981987380428096	ATGAATAGCTTTTAA
chr2	80366107	80366108	chr2:80366108:G:C	rs67091131	G	C	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	80476114	80476115	chr2:80476115:A:T	rs4852566	A	T	A	Sox1.mouse_HMG_2	9	1	+	6.72042457795768	-0.18833020135754108	CTAAATGTCATTCTT
chr2	81315449	81315450	chr2:81315450:G:A	rs76324720	G	A	g	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	81943137	81943138	chr2:81943138:G:A	rs2685710	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	82182507	82182508	chr2:82182508:G:T	rs75350657	G	T	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	82748811	82748812	chr2:82748812:T:C	rs72934138	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	83342810	83342811	chr2:83342811:C:T	rs74916062	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	83587504	83587505	chr2:83587505:G:A	rs78334313	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	83703242	83703243	chr2:83703243:A:G	rs12053088	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	84216039	84216040	chr2:84216040:A:G	rs2364259	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	84337895	84337896	chr2:84337896:G:A	rs76494073	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	84849618	84849619	chr2:84849619:C:T	rs1369882660	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	85113337	85113338	chr2:85113338:A:C	rs73943051	A	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	85278438	85278439	chr2:85278439:T:C	rs6747629	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	85545937	85545938	chr2:85545938:A:G	rs12473819	A	G	G	Sox1.mouse_HMG_2	9	1	+	5.575429820805529	-1.3333249585096922	TTAAATTTCATTTAT
chr2	85555463	85555464	chr2:85555464:C:A	rs78185751	C	A	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	85564217	85564218	chr2:85564218:T:A	rs145176428	T	A	T	Sox1.mouse_HMG_2	6	1	-	3.2945528824046355	2.4535474476632406	CAGAATATCATACAG
chr2	85918905	85918906	chr2:85918906:C:T	rs6547645	C	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	86150860	86150861	chr2:86150861:A:G	chr2:86150861:A:G	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	86398706	86398707	chr2:86398707:A:G	rs76649436	A	G	A	Sox1.mouse_HMG_2	6	1	-	6.259946594815655	2.7485370268686826	ATGACTTAAATTCTT
chr2	87201553	87201554	chr2:87201554:A:G	rs2953715	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	87375095	87375096	chr2:87375096:G:A	rs4070932	G	A	.	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	87529576	87529577	chr2:87529577:T:A	rs62138042	T	A	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	88053457	88053458	chr2:88053458:G:A	rs56035907	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	88054506	88054507	chr2:88054507:G:A	rs78937025	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	88054521	88054522	chr2:88054522:C:G	rs78973527	C	G	C	Sox1.mouse_HMG_2	12	1	+	2.905263057546521	-3.9951855929198423	CTGACTCCCAGTCTC
chr2	88067656	88067657	chr2:88067657:C:G	rs34109539	C	G	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	88232735	88232736	chr2:88232736:A:G	rs4972194	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	88232949	88232950	chr2:88232950:G:C	rs77497994	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	88400160	88400161	chr2:88400161:T:C	rs10221774	T	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	88775332	88775333	chr2:88775333:C:A	rs76580253	C	A	N	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	89773712	89773713	chr2:89773713:C:T	rs1023130179	C	T	.	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	89840444	89840445	chr2:89840445:A:G	rs796676857	A	G	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	90293982	90293983	chr2:90293983:G:A	rs1156405205	G	A	g	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	90294981	90294982	chr2:90294982:T:C	rs762383523	T	C	t	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	90381580	90381581	chr2:90381581:T:A	rs13396470	T	A	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	90383759	90383760	chr2:90383760:C:A	rs7369516	C	A	.	Sox1.mouse_HMG_2	2	1	-	7.1278997671991995	0.2312054355764891	TTGGATTCCATTCAA
chr2	90386083	90386084	chr2:90386084:C:A	rs78626035	C	A	.	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	90392428	90392429	chr2:90392429:C:A	rs7370785	C	A	.	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	90392513	90392514	chr2:90392514:T:G	rs79821416	T	G	.	Sox1.mouse_HMG_2	3	1	-	3.628503090747924	-3.2802516885672968	GTCAATTCCATTCGA
chr2	90395761	90395762	chr2:90395762:C:A	rs6421805	C	A	.	Sox1.mouse_HMG_2	7	1	-	3.3510518153697144	3.1944774605356137	TTGATTAGGATTCAT
chr2	94839318	94839319	chr2:94839319:G:A	rs7588397	G	A	-	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	95260405	95260406	chr2:95260406:C:A	rs1966272	C	A	C	Sox1.mouse_HMG_2	12	1	+	5.359782822798979	-1.5406658276673855	CTGAATGCCAGCCAT
chr2	95338013	95338014	chr2:95338014:T:G	rs918811	T	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	96148335	96148336	chr2:96148336:G:A	rs1168975	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	96164894	96164895	chr2:96164895:A:C	rs949641760	A	C	A	Sox1.mouse_HMG_2	5	1	-	6.347301621705839	-0.5614531576093807	GCGACTACCAGTCAT
chr2	96203552	96203553	chr2:96203553:C:A	rs59664047	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	96665124	96665125	chr2:96665125:A:G	rs72941230	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	96788711	96788712	chr2:96788712:G:A	rs150671310	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	96911923	96911924	chr2:96911924:A:C	rs6732237	A	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	97879197	97879198	chr2:97879198:T:G	rs55886305	T	G	T	Sox1.mouse_HMG_2	11	1	+	5.342522029006872	-1.5662327503083477	CTGAAGAGCAGTCAG
chr2	97969886	97969887	chr2:97969887:C:T	rs62156527	C	T	C	Sox1.mouse_HMG_2	4	1	-	4.210929270759938	11.03234203992001	CTGAGTAACATTTAG
chr2	98415281	98415282	chr2:98415282:A:G	rs17502889	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	98834367	98834368	chr2:98834368:A:G	rs1517682	A	G	A	Sox1.mouse_HMG_2	0	1	-	8.243121865422712	8.509065059192144	TTGTATGACATTCAT
chr2	98849873	98849874	chr2:98849874:A:T	rs12992214	A	T	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	98877333	98877334	chr2:98877334:C:T	rs78765107	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	99066396	99066397	chr2:99066397:A:C	rs144812150	A	C	A	Sox1.mouse_HMG_2	11	1	-	6.330338009506346	-0.5784167698088755	GTGAATACAATTCGT
chr2	99696062	99696063	chr2:99696063:T:A	rs185837224	T	A	T	Sox1.mouse_HMG_2	4	1	-	4.121712304741831	-2.6997004644182394	GTGAATGTCTTTCTT
chr2	100113755	100113756	chr2:100113756:A:T	rs6707220	A	T	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	100127355	100127356	chr2:100127356:G:C	rs574188171	G	C	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	100535948	100535949	chr2:100535949:C:G	rs7423870	C	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	100690522	100690523	chr2:100690523:G:A	rs75836850	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.6164901992522287	-1.0289123337639876	TTGAATCCCCTTCAA
chr2	100733732	100733733	chr2:100733733:A:C	chr2:100733733:A:C	A	C	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	100862551	100862552	chr2:100862552:C:A	rs1811399	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	100896080	100896081	chr2:100896081:G:A	rs17654772	G	A	G	Sox1.mouse_HMG_2	8	1	-	8.463534308889624	2.8191076185076365	GTGAGTTCCATTCAT
chr2	100967123	100967124	chr2:100967124:A:T	rs7340468	A	T	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	100972732	100972733	chr2:100972733:T:C	rs79473880	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	101043025	101043026	chr2:101043026:C:T	rs6543006	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	101254200	101254201	chr2:101254201:C:G	chr2:101254201:C:G	C	G	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	101348985	101348986	chr2:101348986:A:T	rs6726192	A	T	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	101661172	101661173	chr2:101661173:C:G	rs7584536	C	G	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	101983706	101983707	chr2:101983707:A:C	rs740044	A	C	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	102080591	102080592	chr2:102080592:C:T	rs4850996	C	T	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	102235035	102235036	chr2:102235036:C:T	rs35960329	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	102242029	102242030	chr2:102242030:A:T	rs72998585	A	T	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	102291300	102291301	chr2:102291301:G:C	rs13024003	G	C	G	Sox1.mouse_HMG_2	12	1	-	3.1851840434693033	-3.715264606997061	TAGAATAGCTTTCAG
chr2	102297753	102297754	chr2:102297754:A:G	rs11690644	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	102352277	102352278	chr2:102352278:G:C	rs72823663	G	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	102352290	102352291	chr2:102352291:C:T	rs67088699	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	102352316	102352317	chr2:102352317:C:T	rs77598713	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	102368210	102368211	chr2:102368211:T:A	rs1882348	T	A	T	Sox1.mouse_HMG_2	14	1	+	6.5827496988794545	5.265040334196768	ATGAAATACATTCTT
chr2	102368223	102368224	chr2:102368224:G:A	rs1558627	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	102470297	102470298	chr2:102470298:T:C	rs12469887	T	C	T	Sox1.mouse_HMG_2	7	1	+	4.993934461354555	5.454878915061662	CTGACTTTCTTTCAC
chr2	102470309	102470310	chr2:102470310:A:C	rs990171	A	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	102484929	102484930	chr2:102484930:C:T	rs77308905	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	102793167	102793168	chr2:102793168:A:G	rs2540283	A	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	103003292	103003293	chr2:103003293:G:A	rs115300003	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	103393131	103393132	chr2:103393132:T:G	rs142567472	T	G	t	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	103447406	103447407	chr2:103447407:T:C	rs266063	T	C	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	103496999	103497000	chr2:103497000:G:A	rs6761396	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	103852752	103852753	chr2:103852753:T:A	rs2678669	T	A	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	103869034	103869035	chr2:103869035:G:A	rs55733286	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.919812161321979	5.9240483939571815	GTCAATGGCATTCTC
chr2	104754316	104754317	chr2:104754317:G:A	rs61013045	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	105076409	105076410	chr2:105076410:C:T	rs56148683	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	105184311	105184312	chr2:105184312:A:T	rs56012612	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	105184335	105184336	chr2:105184336:C:T	rs9308883	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	105225770	105225771	chr2:105225771:G:A	rs2053241	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	105330172	105330173	chr2:105330173:G:A	chr2:105330173:G:A	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	105334964	105334965	chr2:105334965:G:A	rs1469939	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	105443445	105443446	chr2:105443446:T:C	rs13025654	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	105515890	105515891	chr2:105515891:C:A	rs13413404	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	105515904	105515905	chr2:105515905:T:C	rs13028452	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	105583279	105583280	chr2:105583280:C:A	rs72821584	C	A	C	Sox1.mouse_HMG_2	7	1	-	7.556687839488958	7.400113484654857	TTGACTGGCATTCTA
chr2	105583286	105583287	chr2:105583287:A:G	rs6741618	A	G	G	Sox1.mouse_HMG_2	0	1	-	7.556687839488958	7.82263103325839	TTGACTGGCATTCTA
chr2	105620169	105620170	chr2:105620170:G:T	rs17031399	G	T	g	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	105634614	105634615	chr2:105634615:T:C	rs17031418	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	105754450	105754451	chr2:105754451:G:C	rs7604409	G	C	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	105803945	105803946	chr2:105803946:C:T	rs1367406	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	105867015	105867016	chr2:105867016:C:T	rs76551997	C	T	T	Sox1.mouse_HMG_2	3	1	+	3.754087110588758	3.754087110588758	CTACATACCATTCAG
chr2	105946838	105946839	chr2:105946839:G:A	rs3926405	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	106039028	106039029	chr2:106039029:A:C	rs2123088	A	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	106053173	106053174	chr2:106053174:G:T	rs73947449	G	T	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	106053216	106053217	chr2:106053217:G:T	rs78644249	G	T	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	106099809	106099810	chr2:106099810:G:A	rs115196931	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	106099833	106099834	chr2:106099834:T:G	rs115979761	T	G	T	Sox1.mouse_HMG_2	7	1	-	3.9591901290565152	3.562505408388446	TTGAAAAAAATTCAC
chr2	106271615	106271616	chr2:106271616:T:C	rs4676155	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	106353714	106353715	chr2:106353715:G:A	rs12614415	G	A	g	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	106563726	106563727	chr2:106563727:C:G	rs899993897	C	G	c	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	106696080	106696081	chr2:106696081:T:C	rs11124128	T	C	T	Sox1.mouse_HMG_2	0	1	+	6.537033908920812	6.802977102690246	TTGAATGCCATTAAA
chr2	107222739	107222740	chr2:107222740:A:C	rs78760723	A	C	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	107406036	107406037	chr2:107406037:G:A	rs114043585	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	107596110	107596111	chr2:107596111:A:T	rs884883	A	T	A	Sox1.mouse_HMG_2	11	1	-	4.407910549488398	-2.5008442298268214	ATGAAGGGCATTCTC
chr2	108413666	108413667	chr2:108413667:C:T	rs56364066	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	108448001	108448002	chr2:108448002:C:T	rs3820960	C	T	-	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	108579895	108579896	chr2:108579896:G:A	rs61461228	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	108587947	108587948	chr2:108587948:A:T	rs536081989	A	T	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	108595262	108595263	chr2:108595263:G:A	rs115384818	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	108607848	108607849	chr2:108607849:A:G	rs11895484	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	108916260	108916261	chr2:108916261:G:A	rs103855	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	108940210	108940211	chr2:108940211:G:C	rs260709	G	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	109089229	109089230	chr2:109089230:A:C	rs117879382	A	C	A	Sox1.mouse_HMG_2	7	1	+	3.6521807819680205	3.255496061299951	GAGAAAAACATTCAA
chr2	109191428	109191429	chr2:109191429:G:A	rs1430306	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	109227305	109227306	chr2:109227306:A:G	rs62151308	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	109236424	109236425	chr2:109236425:T:C	rs35234904	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	109258295	109258296	chr2:109258296:G:A	rs142736249	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	109270347	109270348	chr2:109270348:C:T	rs115077259	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	109305058	109305059	chr2:109305059:G:A	rs10167847	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	109371894	109371895	chr2:109371895:C:T	rs113872086	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	109398116	109398117	chr2:109398117:A:G	rs111544901	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	109406159	109406160	chr2:109406160:G:T	rs61536631	G	T	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	109495447	109495448	chr2:109495448:G:A	rs74204843	G	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	109502666	109502667	chr2:109502667:T:G	rs889504924	T	G	T	Sox1.mouse_HMG_2	9	1	-	4.099685797944304	-2.8090689813709155	TTGAATAATAATCAT
chr2	109562497	109562498	chr2:109562498:G:A	rs767628	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	109613455	109613456	chr2:109613456:A:G	rs190410073	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	110907102	110907103	chr2:110907103:C:T	rs6714299	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	111046838	111046839	chr2:111046839:T:A	rs55808773	T	A	T	Sox1.mouse_HMG_2	3	1	-	9.265892015445539	2.3571372361303196	CTGACTCTCATTCAT
chr2	111046839	111046840	chr2:111046840:C:A	rs56000391	C	A	C	Sox1.mouse_HMG_2	2	1	-	9.265892015445539	2.3691976838228275	CTGACTCTCATTCAT
chr2	111100968	111100969	chr2:111100969:T:C	rs184622344	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	111536496	111536497	chr2:111536497:C:T	rs755216145	C	T	-	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	111618905	111618906	chr2:111618906:T:C	rs140483483	T	C	t	Sox1.mouse_HMG_2	13	1	+	5.7799511574823805	2.6535987015113256	CAGACTATCATTCTT
chr2	111662766	111662767	chr2:111662767:G:A	rs72952456	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	111746991	111746992	chr2:111746992:A:G	rs2686011	A	G	G	Sox1.mouse_HMG_2	6	1	+	6.021276826403132	4.581099404534493	ATAAATATAATTCAG
chr2	111897664	111897665	chr2:111897665:A:G	rs6736093	A	G	a	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	111973003	111973004	chr2:111973004:G:C	rs114292115	G	C	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	112229026	112229027	chr2:112229027:A:G	rs72831649	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	112290207	112290208	chr2:112290208:A:G	rs116647508	A	G	A	Sox1.mouse_HMG_2	14	1	+	6.249472048511176	6.414113296406124	CTGACAAACATTCAA
chr2	112315184	112315185	chr2:112315185:A:T	rs6760417	A	T	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	112340565	112340566	chr2:112340566:G:A	rs10205897	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	112619624	112619625	chr2:112619625:A:G	rs17647292	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	112829543	112829544	chr2:112829544:A:G	rs2853550	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	112836330	112836331	chr2:112836331:T:G	rs374369499	T	G	T	Sox1.mouse_HMG_2	0	1	-	5.524583133652776	4.855706927934418	ATGACTGCCATGCAC
chr2	112947823	112947824	chr2:112947824:C:T	rs78763991	C	T	c	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	113090134	113090135	chr2:113090135:C:T	rs17669228	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.368201842231811	0.723775151849824	AGGAATGGCATTCTC
chr2	113093075	113093076	chr2:113093076:T:A	rs11693683	T	A	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	113417106	113417107	chr2:113417107:G:C	rs1191646	G	C	.	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	113584965	113584966	chr2:113584966:A:G	rs4425085	A	G	a	Sox1.mouse_HMG_2	13	1	+	7.381834836601677	2.435717148829029	GTGAATTACAGTTAC
chr2	113584980	113584981	chr2:113584981:G:C	rs148365477	G	C	g	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	113604973	113604974	chr2:113604974:T:C	rs4274604	T	C	.	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	113755829	113755830	chr2:113755830:T:C	rs112020441	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	113827727	113827728	chr2:113827728:A:G	rs11676646	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	113834799	113834800	chr2:113834800:T:C	rs35167892	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	113899897	113899898	chr2:113899898:G:A	rs1403401	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	113978388	113978389	chr2:113978389:A:C	rs11892943	A	C	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	116161730	116161731	chr2:116161731:T:C	rs62155584	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	116331950	116331951	chr2:116331951:C:T	rs12053031	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	116451041	116451042	chr2:116451042:T:G	rs55777171	T	G	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	116961285	116961286	chr2:116961286:C:A	rs115175578	C	A	C	Sox1.mouse_HMG_2	0	1	-	2.7923090425378136	2.8617258756852246	GTGAACAACAGTCTC
chr2	118123424	118123425	chr2:118123425:G:A	rs13400438	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.099745665548686	0.4271585618804311	CTGAATAAAATGCAT
chr2	118123790	118123791	chr2:118123791:G:A	rs76508224	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.08082451228897	-0.5917625913792857	GAGAATTTCATTCGG
chr2	118490592	118490593	chr2:118490593:G:C	rs746124630	G	C	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	118531201	118531202	chr2:118531202:A:C	chr2:118531202:A:C	A	C	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	118531236	118531237	chr2:118531237:A:G	rs17009143	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	118735591	118735592	chr2:118735592:A:G	rs162746	A	G	G	Sox1.mouse_HMG_2	1	1	+	3.3428380714550983	3.038366892376523	GAGATTACCATTCAA
chr2	118842448	118842449	chr2:118842449:C:T	rs184945714	C	T	C	Sox1.mouse_HMG_2	2	1	+	4.42790625812479	2.9238288613485164	AGCAATGACATTCAA
chr2	118976028	118976029	chr2:118976029:G:T	rs13423102	G	T	G	Sox1.mouse_HMG_2	14	1	-	4.375379996734684	3.9322829747747337	GTGAGTTTCAGTCAC
chr2	119005726	119005727	chr2:119005727:G:A	rs113659345	G	A	g	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	119766185	119766186	chr2:119766186:C:T	rs13015818	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	119856771	119856772	chr2:119856772:G:A	rs189649061	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	119903424	119903425	chr2:119903425:T:C	rs3106242	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	120104876	120104877	chr2:120104877:G:T	rs12603	G	T	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	120291589	120291590	chr2:120291590:G:T	rs11689112	G	T	T	Sox1.mouse_HMG_2	8	1	-	4.869766063529841	0.020269248017741937	GTGAATACCATGCTG
chr2	120352810	120352811	chr2:120352811:G:C	rs7581178	G	C	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	120373794	120373795	chr2:120373795:G:T	rs35444305	G	T	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	120380236	120380237	chr2:120380237:G:A	rs4849869	G	A	G	Sox1.mouse_HMG_2	9	1	-	4.440089163311115	4.440089163311115	CTGAATGACCTTCTC
chr2	120444575	120444576	chr2:120444576:T:C	rs4280462	T	C	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	120682263	120682264	chr2:120682264:A:G	rs11903904	A	G	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	120715224	120715225	chr2:120715225:A:G	rs11122810	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	121100364	121100365	chr2:121100365:C:T	rs13427814	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	121249274	121249275	chr2:121249275:A:C	rs17006283	A	C	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	121291317	121291318	chr2:121291318:T:A	rs2580343	T	A	A	Sox1.mouse_HMG_2	14	1	-	3.9357483730753184	5.253457737758005	GGGAATAACATTCCA
chr2	121336486	121336487	chr2:121336487:C:T	rs2580377	C	T	T	Sox1.mouse_HMG_2	14	1	-	6.8661389000479875	6.70149765215304	CTGAATAATATTCTG
chr2	121486039	121486040	chr2:121486040:C:T	rs79709538	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.5597492820204915	-1.1128378216477635	GTGAAGTGCATTCTA
chr2	121648061	121648062	chr2:121648062:A:G	rs6758050	A	G	G	Sox1.mouse_HMG_2	14	1	+	5.919334878013473	6.08397612590842	ATAAATAATATTCAA
chr2	121648071	121648072	chr2:121648072:G:A	rs80005723	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	121707464	121707465	chr2:121707465:A:G	rs3849310	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	121734803	121734804	chr2:121734804:A:G	rs7575623	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	121855169	121855170	chr2:121855170:T:G	rs11122875	T	G	T	Sox1.mouse_HMG_2	9	1	+	6.399195476375512	6.399195476375512	ATGACTGCCTTTCAT
chr2	122077992	122077993	chr2:122077993:T:C	rs874107	T	C	C	Sox1.mouse_HMG_2	10	1	+	7.689225735762218	0.8412841574819372	TTGAATTACATACAG
chr2	123095421	123095422	chr2:123095422:C:T	rs187070792	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.215083994102123	0.5696814610859068	TTGTATTACAGTCAC
chr2	123696541	123696542	chr2:123696542:G:A	rs17010404	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	123731384	123731385	chr2:123731385:A:C	rs11890550	A	C	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	124064771	124064772	chr2:124064772:T:C	rs1213945	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	124392553	124392554	chr2:124392554:G:T	rs1430258	G	T	G	Sox1.mouse_HMG_2	12	1	-	4.450912506584355	-2.449536143882009	ATGAATAAATTTCAA
chr2	124573548	124573549	chr2:124573549:T:C	rs10445861	T	C	T	Sox1.mouse_HMG_2	12	1	+	5.160574802137789	9.833161905806046	CTGAATATAATTTAA
chr2	124605259	124605260	chr2:124605260:C:T	rs11123053	C	T	T	Sox1.mouse_HMG_2	4	1	+	5.384003267566165	0.9446515662730123	ATGACTTAAAGTCAA
chr2	124877251	124877252	chr2:124877252:A:G	rs2685165	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	125310948	125310949	chr2:125310949:T:A	rs313288	T	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	125462474	125462475	chr2:125462475:A:G	rs62158150	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	126370356	126370357	chr2:126370357:A:G	rs359708	A	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	126381182	126381183	chr2:126381183:C:T	rs190757360	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	126413161	126413162	chr2:126413162:T:C	rs11674115	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.796835681230491	-2.1119190980847287	CAGAATTTGATTCAT
chr2	126765755	126765756	chr2:126765756:C:G	rs34999508	C	G	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	126779845	126779846	chr2:126779846:A:T	rs78560623	A	T	A	Sox1.mouse_HMG_2	14	1	-	3.3247396344883597	2.0070302698056737	ATTAATACCATACAT
chr2	126859831	126859832	chr2:126859832:G:T	rs78847536	G	T	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	127005376	127005377	chr2:127005377:T:G	rs79377723	T	G	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	127083760	127083761	chr2:127083761:T:C	rs13426725	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	127104189	127104190	chr2:127104190:T:A	rs4663096	T	A	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	127181839	127181840	chr2:127181840:T:C	rs10195813	T	C	T	Sox1.mouse_HMG_2	14	1	+	2.673351656059051	1.798739313336315	CTGACCGGCAGTCAT
chr2	127214651	127214652	chr2:127214652:T:C	rs4560059	T	C	C	Sox1.mouse_HMG_2	10	1	+	3.790806624849395	-3.057134953430886	GGGAATAACATACAC
chr2	127610659	127610660	chr2:127610660:T:C	rs777433	T	C	C	Sox1.mouse_HMG_2	10	1	+	8.624045135250011	1.7761035569697285	ATGAATTACATGCAG
chr2	127673901	127673902	chr2:127673902:G:T	rs6755288	G	T	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	127673919	127673920	chr2:127673920:A:G	rs7591310	A	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	127771119	127771120	chr2:127771120:C:G	rs116634293	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	127771159	127771160	chr2:127771160:C:T	rs117796085	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	127858539	127858540	chr2:127858540:G:A	chr2:127858540:G:A	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	127969808	127969809	chr2:127969809:C:T	rs2461444	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.604967335146086	0.9595648021298694	ATGACTAGTATTCTT
chr2	128286446	128286447	chr2:128286447:G:A	rs1002339952	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	128324511	128324512	chr2:128324512:C:T	rs73958904	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	128324516	128324517	chr2:128324517:T:C	rs2595223	T	C	C	Sox1.mouse_HMG_2	1	1	+	4.241891126952572	-0.4021011805406621	GTGACTGCCATGCAG
chr2	128356004	128356005	chr2:128356005:A:G	rs62158114	A	G	A	Sox1.mouse_HMG_2	14	1	+	5.926334860458241	6.090976108353189	CTGAATAGGATTCTA
chr2	128364170	128364171	chr2:128364171:G:A	rs189407269	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	128365877	128365878	chr2:128365878:T:G	rs2897293	T	G	G	Sox1.mouse_HMG_2	7	1	-	3.7820363008659976	3.385351580197928	CTGAAAAAAATTCAA
chr2	128422871	128422872	chr2:128422872:G:A	rs745072	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	128422895	128422896	chr2:128422896:A:G	rs745071	A	G	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	128485651	128485652	chr2:128485652:C:T	rs2443761	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	128664017	128664018	chr2:128664018:C:T	rs62158201	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	128746976	128746977	chr2:128746977:G:A	rs79837540	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	128771142	128771143	chr2:128771143:T:A	rs62175889	T	A	T	Sox1.mouse_HMG_2	3	1	-	3.301226592636319	-3.6075281866789015	CTGAATAGCCGTCTT
chr2	128791405	128791406	chr2:128791406:G:A	rs34084940	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.082180811765405	-0.5904062919028489	CAGACTTCCATTCTA
chr2	129248120	129248121	chr2:129248121:C:T	rs13020372	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	129422152	129422153	chr2:129422153:A:C	rs4662924	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	129712786	129712787	chr2:129712787:G:T	rs78112430	G	T	g	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	129766581	129766582	chr2:129766582:G:C	rs74577922	G	C	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	129766620	129766621	chr2:129766621:C:G	rs573024368	C	G	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	130154781	130154782	chr2:130154782:C:A	rs369929768	C	A	.	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	130166959	130166960	chr2:130166960:G:A	rs28404396	G	A	.	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	130166972	130166973	chr2:130166973:T:A	rs28473698	T	A	.	Sox1.mouse_HMG_2	10	1	+	9.376369744696598	2.528428166416317	ATCAATGACATTCAA
chr2	130936631	130936632	chr2:130936632:G:T	rs7606270	G	T	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	130979914	130979915	chr2:130979915:A:G	rs75134082	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	131061491	131061492	chr2:131061492:G:T	rs112721520	G	T	G	Sox1.mouse_HMG_2	12	1	-	8.768810202621806	1.8683615521554437	CTGACTATAATTCAT
chr2	131093843	131093844	chr2:131093844:A:G	rs36045169	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr2	131093858	131093859	chr2:131093859:G:T	rs141190413	G	T	G	Sox1.mouse_HMG_2	12	1	-	8.864900042345585	1.9644513918792204	CTGACTTGCATTCTC
chr2	131093873	131093874	chr2:131093874:T:C	rs1057460735	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	131093878	131093879	chr2:131093879:A:G	rs116440922	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	131204960	131204961	chr2:131204961:A:G	rs116541944	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	131209244	131209245	chr2:131209245:A:G	rs542534144	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	131209281	131209282	chr2:131209282:G:C	rs374567853	G	C	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	132468746	132468747	chr2:132468747:T:G	rs10192325	T	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	132545629	132545630	chr2:132545630:C:T	rs714546	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	132716838	132716839	chr2:132716839:A:C	rs17325076	A	C	A	Sox1.mouse_HMG_2	12	1	-	6.608219442958828	4.380357896160719	GTGACTTGCATTTAA
chr2	132721403	132721404	chr2:132721404:T:C	rs6736839	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	132772982	132772983	chr2:132772983:C:T	rs16841075	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	132773026	132773027	chr2:132773027:A:T	rs559770913	A	T	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	132886672	132886673	chr2:132886673:C:T	rs1374742	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	132941504	132941505	chr2:132941505:A:T	rs281578	A	T	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	133131061	133131062	chr2:133131062:T:C	rs7598823	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	133139720	133139721	chr2:133139721:C:T	rs1434227	C	T	T	Sox1.mouse_HMG_2	2	1	+	6.78551266141883	5.281435264642555	CTCACTGTCATTCAT
chr2	133147256	133147257	chr2:133147257:A:G	rs1821426	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	133241068	133241069	chr2:133241069:A:C	rs192547689	A	C	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	133286481	133286482	chr2:133286482:G:T	rs151235891	G	T	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	133504546	133504547	chr2:133504547:A:G	rs10928453	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	133600005	133600006	chr2:133600006:C:T	rs35840307	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	133760614	133760615	chr2:133760615:A:G	rs4386376	A	G	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	133880927	133880928	chr2:133880928:A:G	rs1530572	A	G	G	Sox1.mouse_HMG_2	9	1	+	3.410644387822563	-3.4981103914926566	ATGAATACGACTCAG
chr2	133891181	133891182	chr2:133891182:T:C	rs62164710	T	C	C	Sox1.mouse_HMG_2	13	1	-	3.439628054609657	-1.5064896331629911	ATGATTGACATTTAG
chr2	133940514	133940515	chr2:133940515:C:A	rs11884370	C	A	C	Sox1.mouse_HMG_2	8	1	+	3.6985930832599005	-1.1509037322521982	GAGAATACCATACAC
chr2	133951144	133951145	chr2:133951145:G:A	rs1446745	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	134014615	134014616	chr2:134014616:C:T	rs16829907	C	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	134245378	134245379	chr2:134245379:G:T	rs72976117	G	T	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	134265334	134265335	chr2:134265335:A:G	rs6735741	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	134325117	134325118	chr2:134325118:T:C	rs4953913	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	134450903	134450904	chr2:134450904:G:A	rs75561369	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	134511446	134511447	chr2:134511447:G:T	rs543549	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	134513672	134513673	chr2:134513673:T:C	rs140375974	T	C	T	Sox1.mouse_HMG_2	6	1	+	6.025121158911392	2.5137115909644203	CTGACCTGCATTCAT
chr2	134582649	134582650	chr2:134582650:T:C	rs76724959	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	134635905	134635906	chr2:134635906:G:A	rs72970159	G	A	G	Sox1.mouse_HMG_2	13	1	+	4.518932882218754	9.465050569991401	ATGAACAACATTCGG
chr2	134952751	134952752	chr2:134952752:A:G	rs10166142	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	135212953	135212954	chr2:135212954:T:G	rs944516421	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	135337044	135337045	chr2:135337045:C:T	rs6742244	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	135662390	135662391	chr2:135662391:A:G	rs1446584	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	135701656	135701657	chr2:135701657:A:G	rs7592050	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.330391986399384	3.326155753764183	ATGACTAACAGGCAG
chr2	135744882	135744883	chr2:135744883:C:T	rs187445026	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.2909573757026385	-2.3534693146793475	AGTAATTCCATTCAG
chr2	135785168	135785169	chr2:135785169:T:C	rs72972110	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	135916520	135916521	chr2:135916521:T:C	rs73957068	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	136894107	136894108	chr2:136894108:C:A	rs548794	C	A	C	Sox1.mouse_HMG_2	8	1	+	7.91524784502737	3.0657510295152695	GTGGATTTCATTCAT
chr2	137531185	137531186	chr2:137531186:G:C	rs1375358	G	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	137672742	137672743	chr2:137672743:A:G	rs57374424	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.430655899480455	-2.4780988798347647	ATAAATTGCTTTCAT
chr2	137924072	137924073	chr2:137924073:T:C	rs1968736	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	138139441	138139442	chr2:138139442:A:G	rs16840368	A	G	A	Sox1.mouse_HMG_2	11	1	+	3.1942929720671565	3.1942929720671565	GTGAATAGGATACAT
chr2	138740608	138740609	chr2:138740609:T:C	rs192796253	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	139849544	139849545	chr2:139849545:T:C	rs12613749	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	140063820	140063821	chr2:140063821:A:T	rs7559012	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	140442082	140442083	chr2:140442083:A:T	rs1878742	A	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	140452605	140452606	chr2:140452606:T:C	rs116364467	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	140578561	140578562	chr2:140578562:T:C	rs114353427	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	140604652	140604653	chr2:140604653:G:T	rs493102	G	T	T	Sox1.mouse_HMG_2	7	1	-	4.282779026076537	4.679463746744607	ATGAATACCAGTGTT
chr2	140899581	140899582	chr2:140899582:T:G	chr2:140899582:T:G	T	G	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	140907309	140907310	chr2:140907310:G:A	rs1469481	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	141201415	141201416	chr2:141201416:C:G	rs6731032	C	G	G	Sox1.mouse_HMG_2	8	1	+	7.37092367409562	1.6523890115599107	CTGACTCACAGTCAT
chr2	141341265	141341266	chr2:141341266:C:T	rs2683840	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	141421850	141421851	chr2:141421851:A:T	rs72846877	A	T	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	141557336	141557337	chr2:141557337:A:C	rs74600857	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	142175902	142175903	chr2:142175903:C:G	rs72852667	C	G	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	142858059	142858060	chr2:142858060:T:C	rs12478872	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	142874799	142874800	chr2:142874800:T:A	rs371805882	T	A	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	142895456	142895457	chr2:142895457:A:T	rs6711280	A	T	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	142946744	142946745	chr2:142946745:T:C	rs351694	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	142966463	142966464	chr2:142966464:A:G	rs62169908	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	142980521	142980522	chr2:142980522:T:C	rs9679256	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	142980549	142980550	chr2:142980550:G:A	rs62169913	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	142989180	142989181	chr2:142989181:C:T	rs10496936	C	T	t	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	143222291	143222292	chr2:143222292:T:A	rs145366565	T	A	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	143546165	143546166	chr2:143546166:C:T	rs149391812	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	143719625	143719626	chr2:143719626:G:A	rs12465492	G	A	A	Sox1.mouse_HMG_2	0	1	+	6.267507695596859	7.27174392823206	GGGAATTCCATTCTC
chr2	143839706	143839707	chr2:143839707:T:C	rs35563346	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	143840862	143840863	chr2:143840863:A:G	rs1257344	A	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	143840874	143840875	chr2:143840875:T:C	rs13012919	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.063330819090766	2.6231533972221257	GTGAATAGAATCCAT
chr2	144071236	144071237	chr2:144071237:A:C	chr2:144071237:A:C	A	C	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	144111476	144111477	chr2:144111477:G:A	rs1560224	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	144702883	144702884	chr2:144702884:A:G	rs1427509	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	145354399	145354400	chr2:145354400:T:C	rs16824798	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	146313341	146313342	chr2:146313342:A:C	rs62168426	A	C	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	147068202	147068203	chr2:147068203:T:C	rs13396579	T	C	T	Sox1.mouse_HMG_2	13	1	-	6.039290338405356	1.0931726506327073	TGGAATTTCAGTCAG
chr2	147110617	147110618	chr2:147110618:A:G	rs999851151	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	147125977	147125978	chr2:147125978:A:G	rs10181790	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	147355860	147355861	chr2:147355861:C:T	rs72861845	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.969873505257945	1.324470972241729	GGGAATTTCAGTCAG
chr2	147355862	147355863	chr2:147355863:C:T	rs72861846	C	T	C	Sox1.mouse_HMG_2	0	1	-	5.969873505257945	6.974109737893147	GGGAATTTCAGTCAG
chr2	147490692	147490693	chr2:147490693:T:C	rs1371033	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.5827496988794545	1.938757391386221	ATGCATTACATTCTT
chr2	147696774	147696775	chr2:147696775:T:C	rs1919445	T	C	T	Sox1.mouse_HMG_2	10	1	+	7.7276431265751615	0.8797015482948806	ATGACTTTGATTCAT
chr2	148030865	148030866	chr2:148030866:T:C	rs1234398	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	148094465	148094466	chr2:148094466:A:G	rs10928374	A	G	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	148142578	148142579	chr2:148142579:T:C	rs10928377	T	C	T	Sox1.mouse_HMG_2	9	1	-	8.43660636180661	1.527851582491389	CTGAATCACATTCTC
chr2	148273284	148273285	chr2:148273285:T:C	rs78820400	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	148599299	148599300	chr2:148599300:T:C	rs4624325	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	148602378	148602379	chr2:148602379:T:C	rs7583200	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	149123212	149123213	chr2:149123213:T:C	rs7577550	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	149133572	149133573	chr2:149133573:C:T	rs6737636	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	149156344	149156345	chr2:149156345:T:A	rs229319	T	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	149290889	149290890	chr2:149290890:T:C	rs10432497	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	149507500	149507501	chr2:149507501:G:A	rs1918250	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	149537228	149537229	chr2:149537229:A:G	rs111432287	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.422963316307117	3.4187270836719144	ATAAATACCTTTCAG
chr2	149654607	149654608	chr2:149654608:A:C	rs16827301	A	C	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	149684561	149684562	chr2:149684562:G:C	rs13014503	G	C	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	149693237	149693238	chr2:149693238:G:A	rs983533433	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	150134721	150134722	chr2:150134722:G:T	rs330605	G	T	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	150230151	150230152	chr2:150230152:G:C	rs4434022	G	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	150274761	150274762	chr2:150274762:T:C	rs150918843	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	150274766	150274767	chr2:150274767:A:G	rs55752244	A	G	G	Sox1.mouse_HMG_2	3	1	+	3.8553519265624594	-3.0534028527527592	TAGAGTACCATTCAC
chr2	150414044	150414045	chr2:150414045:T:C	rs988528545	T	C	T	Sox1.mouse_HMG_2	6	1	+	4.805886693138483	1.2944771251915124	CTGAATTCCAGCCAG
chr2	150621753	150621754	chr2:150621754:C:T	rs2341059	C	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	150653889	150653890	chr2:150653890:G:C	rs13018941	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	150695815	150695816	chr2:150695816:A:T	rs9973439	A	T	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	150811930	150811931	chr2:150811931:A:G	rs78689798	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	150811950	150811951	chr2:150811951:G:A	rs1029111833	G	A	G	Sox1.mouse_HMG_2	2	1	-	3.71562011147295	2.2115427146966757	CTCAATTACTTTCAT
chr2	150875435	150875436	chr2:150875436:C:T	rs1990149	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	150886031	150886032	chr2:150886032:C:T	rs144185435	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	150947393	150947394	chr2:150947394:T:G	rs1385429	T	G	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	151190040	151190041	chr2:151190041:C:T	rs11889191	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	151757882	151757883	chr2:151757883:G:A	rs6754783	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	151829176	151829177	chr2:151829177:C:T	rs12693126	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	152163731	152163732	chr2:152163732:A:C	rs72864754	A	C	A	Sox1.mouse_HMG_2	1	1	+	5.020104895189311	5.020104895189311	AAGAATTGCATTCCT
chr2	152176275	152176276	chr2:152176276:A:C	rs6740224	A	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	152341787	152341788	chr2:152341788:A:C	rs4311022	A	C	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	152406225	152406226	chr2:152406226:G:C	rs4664578	G	C	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	152508012	152508013	chr2:152508013:A:G	rs1579050	A	G	A	Sox1.mouse_HMG_2	12	1	-	5.734830746587129	10.407417850255383	GTGAATACGATTTAT
chr2	152632809	152632810	chr2:152632810:C:T	rs72871163	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	153059998	153059999	chr2:153059999:A:G	rs79850609	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	153145637	153145638	chr2:153145638:G:T	rs17813970	G	T	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	153645104	153645105	chr2:153645105:A:C	rs13015333	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	153870496	153870497	chr2:153870497:A:G	rs1444687	A	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	153871219	153871220	chr2:153871220:G:A	rs6760079	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.376633236000859	-1.267793454381128	TTGAATTCCTTTCTC
chr2	154497198	154497199	chr2:154497199:C:T	rs249703	C	T	C	Sox1.mouse_HMG_2	10	1	-	4.805886693138483	0.7105426305833	CTGAATTCCAGACAG
chr2	154591202	154591203	chr2:154591203:T:C	rs774508	T	C	T	Sox1.mouse_HMG_2	14	1	+	9.777113252037749	8.902500909315014	ATGAATTACCTTCAT
chr2	154794687	154794688	chr2:154794688:A:T	rs2591154	A	T	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	155144164	155144165	chr2:155144165:C:G	rs34643576	C	G	C	Sox1.mouse_HMG_2	4	1	+	3.324745303763042	-1.114606397530109	ATGACTTACAGCCAA
chr2	155377366	155377367	chr2:155377367:T:A	rs1347103807	T	A	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	156005715	156005716	chr2:156005716:G:C	rs12470684	G	C	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	156883974	156883975	chr2:156883975:C:A	rs884332	C	A	A	Sox1.mouse_HMG_2	8	1	+	5.6143233914103226	0.7648265758982234	TTGTATAACATTCTC
chr2	157895800	157895801	chr2:157895801:G:A	rs146532072	G	A	g	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	157899153	157899154	chr2:157899154:C:T	rs80054641	C	T	C	Sox1.mouse_HMG_2	2	1	+	4.075153606678388	2.571076209902114	ATCATTTCCATTCAT
chr2	158020704	158020705	chr2:158020705:A:T	rs116109415	A	T	A	Sox1.mouse_HMG_2	3	1	+	3.491941228298119	-3.416813551017099	ATGACAACCATTCTG
chr2	158211734	158211735	chr2:158211735:C:A	chr2:158211735:C:A	C	A	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	158575490	158575491	chr2:158575491:A:G	rs112790333	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	158600675	158600676	chr2:158600676:A:G	rs6743618	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	158701444	158701445	chr2:158701445:C:T	rs72943649	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	158701464	158701465	chr2:158701465:A:C	rs2528608	A	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	158781611	158781612	chr2:158781612:A:C	rs61129598	A	C	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	158904938	158904939	chr2:158904939:A:C	rs771016668	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	158993827	158993828	chr2:158993828:G:A	rs55639815	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr2	159136255	159136256	chr2:159136256:C:T	rs199746583	C	T	C	Sox1.mouse_HMG_2	7	1	-	3.3042434506589453	4.005298270200023	CTGAATGGCATTATA
chr2	159210135	159210136	chr2:159210136:C:G	rs73967239	C	G	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	159278729	159278730	chr2:159278730:A:G	rs7608205	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	159347186	159347187	chr2:159347187:G:A	rs7576570	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	159562141	159562142	chr2:159562142:T:C	rs35299907	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	159658227	159658228	chr2:159658228:C:T	rs7594159	C	T	T	Sox1.mouse_HMG_2	14	1	+	8.053177863788692	8.927790206511427	ATGAATTTCATTAAC
chr2	159829590	159829591	chr2:159829591:T:C	rs16844374	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	159829737	159829738	chr2:159829738:C:T	rs2556095	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	160109971	160109972	chr2:160109972:A:G	rs78437253	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	160195007	160195008	chr2:160195008:G:A	rs78702982	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	160224289	160224290	chr2:160224290:A:G	rs62175435	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	160254364	160254365	chr2:160254365:G:C	rs56203028	G	C	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	160330544	160330545	chr2:160330545:T:C	rs72972869	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	160339333	160339334	chr2:160339334:T:A	rs74843684	T	A	T	Sox1.mouse_HMG_2	5	1	+	8.377650370301174	1.4688955909859516	TTTAATAACATTCAA
chr2	160511202	160511203	chr2:160511203:T:C	rs6750595	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	160576176	160576177	chr2:160576177:A:G	rs114707691	A	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	160920159	160920160	chr2:160920160:C:T	rs62194733	C	T	C	Sox1.mouse_HMG_2	6	1	-	11.486005933184636	12.926183355053276	CTGACTGCCATTCAG
chr2	160925261	160925262	chr2:160925262:C:T	rs1722636	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	160956417	160956418	chr2:160956418:C:T	rs77176504	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	161063853	161063854	chr2:161063854:A:G	rs139475499	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	161077338	161077339	chr2:161077339:A:G	rs4664404	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.361060798399505	-0.282931509093728	TTGAATTCCATTTCT
chr2	161111890	161111891	chr2:161111891:A:G	rs17705404	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	161279618	161279619	chr2:161279619:C:G	rs760506254	C	G	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	162036827	162036828	chr2:162036828:C:A	rs76077165	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	162111747	162111748	chr2:162111748:C:A	rs2892826	C	A	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	162297740	162297741	chr2:162297741:T:A	rs986421188	T	A	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	162300478	162300479	chr2:162300479:T:A	rs188678157	T	A	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	162668740	162668741	chr2:162668741:G:A	rs58660113	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	162668744	162668745	chr2:162668745:T:G	rs9973688	T	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	163122682	163122683	chr2:163122683:T:C	rs55640723	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	163169686	163169687	chr2:163169687:G:A	rs1489636	G	A	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	163213708	163213709	chr2:163213709:A:G	rs6706079	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	163346381	163346382	chr2:163346382:A:T	rs72879354	A	T	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	163601464	163601465	chr2:163601465:A:G	rs76515372	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.395544228057434	-2.5132105512577856	GTCACTCACATTCAT
chr2	163717833	163717834	chr2:163717834:T:C	rs80163246	T	C	T	Sox1.mouse_HMG_2	4	1	-	6.106045768938162	-0.7153670002219098	ATGAATAACCTTCTA
chr2	164470759	164470760	chr2:164470760:C:T	rs12464219	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	164777645	164777646	chr2:164777646:G:A	rs355886	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	165147401	165147402	chr2:165147402:G:A	rs16850140	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	165293692	165293693	chr2:165293693:G:A	rs566474224	G	A	G	Sox1.mouse_HMG_2	6	1	+	3.8956901954766803	5.335867617345322	TTGAATGACTTTCTG
chr2	165314806	165314807	chr2:165314807:G:T	rs3769938	G	T	T	Sox1.mouse_HMG_2	0	1	+	4.081127345426911	4.150544178574322	GTGAATACAATTCCC
chr2	165576753	165576754	chr2:165576754:T:C	rs75761462	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	165819775	165819776	chr2:165819776:A:C	chr2:165819776:A:C	A	C	A	Sox1.mouse_HMG_2	1	1	-	4.602785128503491	-0.3456783580683148	CTACATAGCATTCAT
chr2	165954059	165954060	chr2:165954060:C:A	rs6432854	C	A	A	Sox1.mouse_HMG_2	2	1	-	3.752391649446203	-3.1443026821765114	CTGAATTCCATTTCC
chr2	165954075	165954076	chr2:165954076:G:A	rs1176726157	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	166084414	166084415	chr2:166084415:T:C	rs487374	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	166356495	166356496	chr2:166356496:C:T	rs13431341	C	T	c	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	167137112	167137113	chr2:167137113:G:A	rs113660498	G	A	A	Sox1.mouse_HMG_2	7	1	-	2.452528574721585	1.991584121014479	CTGAAGACCAGTCTG
chr2	167401303	167401304	chr2:167401304:A:T	rs1403902	A	T	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	167909169	167909170	chr2:167909170:A:G	rs836653	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	168016318	168016319	chr2:168016319:T:A	rs6759360	T	A	A	Sox1.mouse_HMG_2	10	1	+	8.646697154405395	1.798755576125112	AAGACTAGCATTCAG
chr2	168025945	168025946	chr2:168025946:T:C	rs6717944	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.592547506019738	-2.316207273295484	AGCAATGACATTCAG
chr2	168031105	168031106	chr2:168031106:C:T	rs114744687	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	168146962	168146963	chr2:168146963:C:T	rs925845	C	T	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	168161272	168161273	chr2:168161273:T:C	rs3820858	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	168233687	168233688	chr2:168233688:C:T	rs10181180	C	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	168664221	168664222	chr2:168664222:G:C	rs1863146	G	C	g	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	168666535	168666536	chr2:168666536:T:G	rs4668097	T	G	g	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	168692397	168692398	chr2:168692398:T:C	rs62174419	T	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	168851041	168851042	chr2:168851042:A:G	rs488621	A	G	a	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	168853647	168853648	chr2:168853648:C:T	rs72883292	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	168912536	168912537	chr2:168912537:T:C	rs1879696	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	168941660	168941661	chr2:168941661:A:G	rs2685812	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.7310489475817326	-3.090363821578338	TTGAAAGACATTCTA
chr2	169069350	169069351	chr2:169069351:A:G	rs2287611	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	169222096	169222097	chr2:169222097:C:T	rs9283479	C	T	C	Sox1.mouse_HMG_2	7	1	+	4.086701841126036	3.6257573874189286	GTGAATACGATTCCT
chr2	169222118	169222119	chr2:169222119:T:G	chr2:169222119:T:G	T	G	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	169397900	169397901	chr2:169397901:G:A	rs141434288	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	169643503	169643504	chr2:169643504:T:A	rs78239812	T	A	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	169748434	169748435	chr2:169748435:G:C	rs80320994	G	C	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	169828669	169828670	chr2:169828670:T:G	rs56154841	T	G	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	170017698	170017699	chr2:170017699:A:T	rs10497355	A	T	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	170087313	170087314	chr2:170087314:A:G	rs17635844	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	170397211	170397212	chr2:170397212:C:A	rs7579463	C	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	170711975	170711976	chr2:170711976:C:A	rs6761733	C	A	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	170815109	170815110	chr2:170815110:G:A	rs45485091	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	170815126	170815127	chr2:170815127:G:A	rs872124	G	A	G	Sox1.mouse_HMG_2	12	1	-	2.8884764963567746	-1.78411060731148	CGGAATTCCATCCAC
chr2	171046093	171046094	chr2:171046094:A:T	rs6751462	A	T	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	171046123	171046124	chr2:171046124:C:T	rs75937101	C	T	C	Sox1.mouse_HMG_2	14	1	+	2.9341540225888423	3.808766365311578	ATTAGTAACATTCAC
chr2	171729556	171729557	chr2:171729557:A:G	rs13000153	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.4779396370717945	-3.430815142243425	TGGAATAACACTCAA
chr2	171794776	171794777	chr2:171794777:C:T	rs3770458	C	T	t	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr2	172209188	172209189	chr2:172209189:G:A	rs10930533	G	A	A	Sox1.mouse_HMG_2	2	1	+	9.299591095837192	4.654188562820975	CTGAATTCCATTCCT
chr2	172213417	172213418	chr2:172213418:A:G	rs189877891	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	172213426	172213427	chr2:172213427:G:C	rs62168967	G	C	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	172223648	172223649	chr2:172223649:C:T	rs142912209	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	172278769	172278770	chr2:172278770:C:T	rs4433964	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	172429159	172429160	chr2:172429160:C:T	rs545336866	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	172561518	172561519	chr2:172561519:G:A	rs114750929	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.9138734931610974	0.26944680277911004	CTGAATTACTTTCTT
chr2	172739934	172739935	chr2:172739935:G:A	rs13000099	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	172783293	172783294	chr2:172783294:T:C	rs141571931	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	172861530	172861531	chr2:172861531:G:A	rs3769292	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	172978006	172978007	chr2:172978007:T:C	rs1867942	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.98613058336188	-2.8352821857981927	CTAAACAACATTCAA
chr2	173014299	173014300	chr2:173014300:G:A	rs73017529	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	173573233	173573234	chr2:173573234:C:T	rs12619702	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	173832743	173832744	chr2:173832744:G:A	rs6433440	G	A	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	174112104	174112105	chr2:174112105:T:C	rs77345174	T	C	T	Sox1.mouse_HMG_2	13	1	-	10.002583636521798	5.0564659487491515	ATGAATTTCATTTAG
chr2	174332053	174332054	chr2:174332054:A:G	rs116221908	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	174339026	174339027	chr2:174339027:A:G	rs72915577	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.639882666120709	-2.208058912159572	ATTAATAACATTTAA
chr2	174341541	174341542	chr2:174341542:T:C	rs905903895	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	175057595	175057596	chr2:175057596:C:G	rs2772248	C	G	c	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	175057597	175057598	chr2:175057598:A:C	rs2541059	A	C	a	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	175364193	175364194	chr2:175364194:A:T	rs6757657	A	T	A	Sox1.mouse_HMG_2	10	1	-	9.657195207267636	2.8092536289873546	CTAAATTCCATTCAA
chr2	175575987	175575988	chr2:175575988:A:C	rs4075842	A	C	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	175730260	175730261	chr2:175730261:T:C	rs12693080	T	C	T	Sox1.mouse_HMG_2	7	1	-	6.7548789279024914	6.0538241083614155	CTGAAAAACATTCTT
chr2	176550003	176550004	chr2:176550004:T:C	rs2922333	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	176565575	176565576	chr2:176565576:C:G	rs11888733	C	G	C	Sox1.mouse_HMG_2	14	1	+	3.098966120004635	2.8205103459396326	CTGACTTACAGACAC
chr2	176683784	176683785	chr2:176683785:C:T	rs938278	C	T	T	Sox1.mouse_HMG_2	2	1	-	3.3805084551697404	-1.2648940778464763	GTGATTAACATTCCT
chr2	176893888	176893889	chr2:176893889:C:G	rs16864666	C	G	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	176961142	176961143	chr2:176961143:T:A	rs78744523	T	A	T	Sox1.mouse_HMG_2	5	1	+	6.331767045620431	-0.5769877336947901	ATGAATTGCAGTAAT
chr2	177261264	177261265	chr2:177261265:G:A	rs77992884	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	177274779	177274780	chr2:177274780:A:G	rs2001530	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	177475041	177475042	chr2:177475042:C:G	rs78321479	C	G	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	177495346	177495347	chr2:177495347:G:A	rs17326999	G	A	G	Sox1.mouse_HMG_2	4	1	-	4.814583897468765	0.3752321961756141	CTGACGAACAGTCAT
chr2	177536559	177536560	chr2:177536560:T:C	rs7606235	T	C	T	Sox1.mouse_HMG_2	0	1	-	7.415580444528817	6.411344211893616	ATGACTATGATTCAG
chr2	177556377	177556378	chr2:177556378:A:G	rs4893962	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	177556393	177556394	chr2:177556394:C:T	rs1485866411	C	T	C	Sox1.mouse_HMG_2	7	1	+	5.81953578273567	5.358591329028564	AAGAATTCCATTTAG
chr2	177607436	177607437	chr2:177607437:A:C	rs10497499	A	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	177675371	177675372	chr2:177675372:T:C	rs116661003	T	C	T	Sox1.mouse_HMG_2	6	1	-	3.54328683407796	2.1031094122093204	CTGACTACCAGGCAC
chr2	177808961	177808962	chr2:177808962:A:G	rs13004037	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	178397267	178397268	chr2:178397268:A:C	rs373199867	A	C	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	178397288	178397289	chr2:178397289:G:A	rs6744099	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.875980075037163	1.230577542020947	TGGAATTTCATTCTC
chr2	178397312	178397313	chr2:178397313:C:T	rs72953337	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	178397316	178397317	chr2:178397317:T:A	rs73034362	T	A	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	178414746	178414747	chr2:178414747:A:G	rs187903709	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.730319270657154	1.0863269631639199	CTGACTGCCATCCAT
chr2	178414762	178414763	chr2:178414763:G:A	rs193010018	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	178481672	178481673	chr2:178481673:G:A	chr2:178481673:G:A	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	179410643	179410644	chr2:179410644:T:A	rs13410126	T	A	T	Sox1.mouse_HMG_2	7	1	+	4.367872577557527	5.225501751932704	ATCGATATCATTCAT
chr2	179428785	179428786	chr2:179428786:A:G	rs7579684	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	179428789	179428790	chr2:179428790:T:A	rs13008972	T	A	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	179575084	179575085	chr2:179575085:A:G	rs1515306	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	179594544	179594545	chr2:179594545:C:T	rs66812964	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	179805342	179805343	chr2:179805343:A:G	rs357714	A	G	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	179817578	179817579	chr2:179817579:G:A	rs76433126	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	179849234	179849235	chr2:179849235:G:A	rs10930887	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	179874722	179874723	chr2:179874723:C:A	rs1486236	C	A	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	179975065	179975066	chr2:179975066:T:A	rs12693216	T	A	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	180039204	180039205	chr2:180039205:C:T	rs262254	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	180291304	180291305	chr2:180291305:T:A	rs2679329	T	A	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	180370698	180370699	chr2:180370699:T:G	rs6759225	T	G	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	180370700	180370701	chr2:180370701:C:T	chr2:180370701:C:T	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	180482575	180482576	chr2:180482576:A:G	rs7571602	A	G	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	180708149	180708150	chr2:180708150:C:G	rs149468637	C	G	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	180942617	180942618	chr2:180942618:G:T	rs4666980	G	T	G	Sox1.mouse_HMG_2	8	1	-	6.972174266050693	2.1226774505385935	CAGACTTGCATTCAA
chr2	180979453	180979454	chr2:180979454:T:C	rs10168243	T	C	T	Sox1.mouse_HMG_2	0	1	+	8.304154960321913	8.570098154091346	TTGACTGCCATTCTC
chr2	181018151	181018152	chr2:181018152:G:A	rs10167839	G	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	181018157	181018158	chr2:181018158:T:C	rs55977965	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	181035894	181035895	chr2:181035895:C:G	rs12614444	C	G	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	181105203	181105204	chr2:181105204:T:G	rs908733	T	G	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	181372042	181372043	chr2:181372043:C:T	rs79356370	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	181561146	181561147	chr2:181561147:C:T	rs113255116	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	181783598	181783599	chr2:181783599:G:T	rs11903205	G	T	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	181783697	181783698	chr2:181783698:T:C	rs13391733	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	182081757	182081758	chr2:182081758:G:A	rs17648206	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	182088182	182088183	chr2:182088183:A:C	rs1196149	A	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	182242685	182242686	chr2:182242686:G:A	rs2128045	G	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	182452425	182452426	chr2:182452426:C:T	rs6433973	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	182477997	182477998	chr2:182477998:G:A	rs10206152	G	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	182504051	182504052	chr2:182504052:T:C	rs10931022	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	182855069	182855070	chr2:182855070:T:C	rs151314344	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	183197883	183197884	chr2:183197884:C:T	rs72898525	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	183487537	183487538	chr2:183487538:A:G	rs34351434	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	184655053	184655054	chr2:184655054:T:G	chr2:184655054:T:G	T	G	T	Sox1.mouse_HMG_2	3	1	-	5.827267880210433	-1.0814868991047855	TAGAATACAATTCAC
chr2	184784827	184784828	chr2:184784828:T:C	rs1317210	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	184890382	184890383	chr2:184890383:C:A	rs16826270	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	185222290	185222291	chr2:185222291:G:T	rs10931162	G	T	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	185332403	185332404	chr2:185332404:G:A	rs1320225422	G	A	G	Sox1.mouse_HMG_2	3	1	-	2.1596110700081135	2.1596110700081135	ATGCATACCATCCAG
chr2	185583222	185583223	chr2:185583223:C:T	rs368280434	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.852787327843107	1.2073847948268894	CTGACTACCATCCAA
chr2	185644995	185644996	chr2:185644996:G:A	rs115572896	G	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	186159291	186159292	chr2:186159292:A:T	rs6725392	A	T	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	186216797	186216798	chr2:186216798:G:A	rs16827624	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	186310169	186310170	chr2:186310170:T:C	rs7582412	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	186544565	186544566	chr2:186544566:C:T	rs116335643	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	186562056	186562057	chr2:186562057:C:T	rs73044313	C	T	C	Sox1.mouse_HMG_2	0	1	+	2.165875359022827	1.8999321652533945	CTGAAGAACATCCAC
chr2	186717000	186717001	chr2:186717001:T:C	rs62196185	T	C	T	Sox1.mouse_HMG_2	9	1	-	10.647289733418456	3.738534954103234	CTGAATTTCATTCTA
chr2	186842155	186842156	chr2:186842156:T:G	rs10166171	T	G	T	Sox1.mouse_HMG_2	3	1	-	7.672601996128435	0.7638472168132158	TTGAACATCATTCAG
chr2	186863047	186863048	chr2:186863048:C:T	rs115797026	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	186863062	186863063	chr2:186863063:T:C	rs10931258	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.9672650817075175	3.5270876598388794	CCCAATAGCATTCAG
chr2	186882728	186882729	chr2:186882729:A:G	rs56798941	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	186919475	186919476	chr2:186919476:G:A	rs1328655117	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	187495322	187495323	chr2:187495323:A:T	rs8176459	A	T	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	187577581	187577582	chr2:187577582:C:G	rs35277838	C	G	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	188070111	188070112	chr2:188070112:A:G	rs11691992	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	188070142	188070143	chr2:188070143:A:G	rs11691997	A	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	188196623	188196624	chr2:188196624:T:C	rs1439894	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	188303827	188303828	chr2:188303828:A:T	rs6712056	A	T	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	188340854	188340855	chr2:188340855:G:C	rs13014162	G	C	C	Sox1.mouse_HMG_2	0	1	+	6.861284938418843	7.196644965335686	GTGAAGAACAGTCAT
chr2	188737957	188737958	chr2:188737958:G:A	rs4667245	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	188788631	188788632	chr2:188788632:G:A	rs183236548	G	A	G	Sox1.mouse_HMG_2	1	1	+	4.013374105709564	4.317845284788139	AGCAATGTCATTCAC
chr2	188985046	188985047	chr2:188985047:A:G	rs3106796	A	G	A	Sox1.mouse_HMG_2	10	1	-	6.250849437258786	-0.5970921410214948	ATGACTTTCATTCCC
chr2	189082258	189082259	chr2:189082259:A:C	rs56381977	A	C	A	Sox1.mouse_HMG_2	1	1	-	8.919484077662572	3.9710205910907623	ATGAATTTCATCCAT
chr2	189082269	189082270	chr2:189082270:T:C	rs56074008	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	189089233	189089234	chr2:189089234:C:A	rs10931393	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	189124576	189124577	chr2:189124577:C:T	rs1515869	C	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	189217870	189217871	chr2:189217871:T:C	rs114826780	T	C	T	Sox1.mouse_HMG_2	0	1	+	6.138107460558657	6.404050654328089	TGGAATCACATTCAG
chr2	189268065	189268066	chr2:189268066:C:T	rs1474000	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	189362456	189362457	chr2:189362457:G:A	rs13394718	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	189454428	189454429	chr2:189454429:C:T	rs74415056	C	T	T	Sox1.mouse_HMG_2	0	1	+	7.567181413193863	7.30123821942443	CTGACCAACATTCAT
chr2	189454433	189454434	chr2:189454434:C:G	rs77120763	C	G	C	Sox1.mouse_HMG_2	5	1	+	7.567181413193863	7.567181413193863	CTGACCAACATTCAT
chr2	189454461	189454462	chr2:189454462:A:C	rs7419276	A	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	189511708	189511709	chr2:189511709:T:C	rs10931422	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	189659066	189659067	chr2:189659067:A:G	rs1053947463	A	G	A	Sox1.mouse_HMG_2	14	1	-	3.275579611540435	2.4009672688176993	CTGACTCACAATCAT
chr2	190173517	190173518	chr2:190173518:G:A	rs13430714	G	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	190182541	190182542	chr2:190182542:G:C	rs143385334	G	C	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	190484955	190484956	chr2:190484956:T:G	rs7595579	T	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	190540237	190540238	chr2:190540238:G:A	rs4853718	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	190604035	190604036	chr2:190604036:T:C	rs16832765	T	C	T	Sox1.mouse_HMG_2	9	1	-	10.437057278574303	3.5283024992590835	GTAAATGACATTCAT
chr2	190756328	190756329	chr2:190756329:T:G	rs1263109	T	G	G	Sox1.mouse_HMG_2	6	1	-	5.614323391410324	1.2619083887219569	TTGAATAACATGCTC
chr2	190765954	190765955	chr2:190765955:G:C	rs73043478	G	C	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	190815557	190815558	chr2:190815558:A:G	rs116101237	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	190859205	190859206	chr2:190859206:T:G	rs1921910	T	G	T	Sox1.mouse_HMG_2	0	1	-	3.914498934938228	3.2456227292198703	ATGAAAAGAATTCAG
chr2	191030475	191030476	chr2:191030476:T:A	rs3024904	T	A	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	191075533	191075534	chr2:191075534:G:A	rs16833239	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	191165193	191165194	chr2:191165194:C:T	rs116561122	C	T	C	Sox1.mouse_HMG_2	9	1	-	5.391842874136	12.300597653451222	CTGACTATCGTTCAA
chr2	191188979	191188980	chr2:191188980:C:A	rs6744978	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	191193382	191193383	chr2:191193383:G:T	rs10931488	G	T	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	191385569	191385570	chr2:191385570:G:C	rs35807090	G	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	191401278	191401279	chr2:191401279:A:G	rs73060769	A	G	A	Sox1.mouse_HMG_2	14	1	-	6.538844016468341	5.664231673745604	AAAAATTTCATTCAT
chr2	191418826	191418827	chr2:191418827:A:G	rs146964552	A	G	A	Sox1.mouse_HMG_2	11	1	-	7.370710599291772	0.4619558199765511	ATGAATTCAATTCTC
chr2	191571574	191571575	chr2:191571575:A:G	rs184470402	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	191612822	191612823	chr2:191612823:C:T	rs529128720	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	191831528	191831529	chr2:191831529:A:G	rs7585866	A	G	A	Sox1.mouse_HMG_2	13	1	+	6.092977854399172	1.1468601666265235	AGGAATTATATTCAT
chr2	191926962	191926963	chr2:191926963:A:G	rs59649407	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	192885745	192885746	chr2:192885746:G:A	rs16835017	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	192885787	192885788	chr2:192885788:G:A	rs1010731223	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	194270775	194270776	chr2:194270776:T:G	rs28431788	T	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	194445093	194445094	chr2:194445094:C:T	rs4850533	C	T	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	194514434	194514435	chr2:194514435:G:A	rs79701896	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	195107153	195107154	chr2:195107154:C:T	rs10171891	C	T	C	Sox1.mouse_HMG_2	8	1	+	2.2210387553552575	-3.423387935026728	ATGAGAAGCATTCAC
chr2	195318682	195318683	chr2:195318683:A:G	rs16839391	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.413057842457935	-1.4348837358223465	ATGAATATCATGCTG
chr2	195407464	195407465	chr2:195407465:C:T	chr2:195407465:C:T	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	195447751	195447752	chr2:195447752:G:A	rs12995102	G	A	g	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	195536804	195536805	chr2:195536805:A:C	rs10171945	A	C	C	Sox1.mouse_HMG_2	5	1	-	5.4957426678490995	-1.41301211146612	AAGAATGACAGTCTT
chr2	195592841	195592842	chr2:195592842:T:C	rs16837590	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr2	195800073	195800074	chr2:195800074:G:T	rs80290282	G	T	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	195899058	195899059	chr2:195899059:G:A	rs17361373	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	195932403	195932404	chr2:195932404:C:T	rs7563357	C	T	C	Sox1.mouse_HMG_2	9	1	+	4.614027462955028	4.614027462955028	TTGAATACCCTTTAT
chr2	196066693	196066694	chr2:196066694:C:G	rs16844476	C	G	C	Sox1.mouse_HMG_2	1	1	-	4.777325974310351	5.081797153388925	AGGAATAGCAGTCTG
chr2	196205699	196205700	chr2:196205700:G:A	rs6748485	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	196205717	196205718	chr2:196205718:G:T	rs1455815	G	T	T	Sox1.mouse_HMG_2	8	1	-	8.294437904631595	3.444941089119493	CTGAATTACAATCAC
chr2	196249773	196249774	chr2:196249774:T:C	rs555558245	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	196260949	196260950	chr2:196260950:G:T	rs190665634	G	T	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	196267271	196267272	chr2:196267272:T:A	rs1125158	T	A	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	196685906	196685907	chr2:196685907:C:A	rs4386341	C	A	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	197097864	197097865	chr2:197097865:C:T	rs13402734	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	197097873	197097874	chr2:197097874:C:T	rs4387815	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	197209058	197209059	chr2:197209059:C:T	rs2697309	C	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	197847020	197847021	chr2:197847021:A:G	rs1405246366	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.571795200459654	-2.2761463778206275	GTACATACCATTCAT
chr2	198143781	198143782	chr2:198143782:C:T	rs11674075	C	T	C	Sox1.mouse_HMG_2	7	1	-	9.124757644256382	9.825812463797456	AGGAATAGCAGTCAT
chr2	198616018	198616019	chr2:198616019:G:T	rs35981328	G	T	G	Sox1.mouse_HMG_2	14	1	+	8.134799865823915	9.287867982611653	ATAAATTACAGTCAG
chr2	198706397	198706398	chr2:198706398:G:A	rs116783381	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.64582621901873	2.0013995286367416	CTGATTTCCATTCAG
chr2	199220645	199220646	chr2:199220646:T:C	rs16831165	T	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	199756957	199756958	chr2:199756958:C:T	rs55898319	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	199799146	199799147	chr2:199799147:A:G	rs77624902	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	199914502	199914503	chr2:199914503:A:G	chr2:199914503:A:G	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	200094797	200094798	chr2:200094798:A:G	rs10755016	A	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	200158103	200158104	chr2:200158104:C:T	rs75000539	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	200239509	200239510	chr2:200239510:A:C	rs1035290526	A	C	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	200468787	200468788	chr2:200468788:C:A	rs79778833	C	A	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	200496964	200496965	chr2:200496965:G:T	rs12693915	G	T	g	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	200764827	200764828	chr2:200764828:A:G	rs41422845	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr2	201227242	201227243	chr2:201227243:T:C	rs62191502	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	201260846	201260847	chr2:201260847:G:A	rs1335927299	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	201558448	201558449	chr2:201558449:C:T	rs73991640	C	T	c	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	201630756	201630757	chr2:201630757:T:C	rs1209409	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	201642390	201642391	chr2:201642391:T:C	rs79383733	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	201907888	201907889	chr2:201907889:C:T	rs62195493	C	T	C	Sox1.mouse_HMG_2	12	1	+	2.0131945339636874	-2.659392569704567	CTGAATGCCTTTCGG
chr2	201940734	201940735	chr2:201940735:C:T	rs13015453	C	T	C	Sox1.mouse_HMG_2	3	1	+	4.002846303980442	4.002846303980442	GTGCATTGCATTCTC
chr2	201950806	201950807	chr2:201950807:G:A	rs7562987	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	201974920	201974921	chr2:201974921:G:A	rs17385923	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	202042329	202042330	chr2:202042330:C:T	rs13026106	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	202318108	202318109	chr2:202318109:C:T	rs78655127	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	202703061	202703062	chr2:202703062:G:A	rs371399542	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	203017834	203017835	chr2:203017835:C:T	rs10188105	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	203802419	203802420	chr2:203802420:C:T	rs775568117	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	204037606	204037607	chr2:204037607:T:G	rs12615668	T	G	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr2	204239929	204239930	chr2:204239930:G:A	rs10427204	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	204335285	204335286	chr2:204335286:A:T	rs4675451	A	T	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	204483966	204483967	chr2:204483967:G:A	rs139687491	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr2	204909881	204909882	chr2:204909882:A:G	rs77406642	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	205051579	205051580	chr2:205051580:G:T	rs58982621	G	T	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	205051591	205051592	chr2:205051592:T:C	rs78313861	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	205337471	205337472	chr2:205337472:C:T	rs13011886	C	T	C	Sox1.mouse_HMG_2	10	1	-	5.794148381785112	1.698804319229927	ATGATTTACAGTCAA
chr2	205391327	205391328	chr2:205391328:A:G	rs116710310	A	G	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	205715100	205715101	chr2:205715101:G:A	rs2110875	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	205789398	205789399	chr2:205789399:C:A	rs1990708	C	A	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	205862977	205862978	chr2:205862978:T:G	rs10187464	T	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	205914637	205914638	chr2:205914638:T:C	rs1558847	T	C	C	Sox1.mouse_HMG_2	4	1	-	5.108965369029476	-1.7124474001305983	ATGAATGACTTTCTC
chr2	205944434	205944435	chr2:205944435:G:T	rs12694036	G	T	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	206480411	206480412	chr2:206480412:C:T	rs144085794	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	206480421	206480422	chr2:206480422:T:C	rs77081251	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	206729295	206729296	chr2:206729296:C:T	rs10175228	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	207296771	207296772	chr2:207296772:T:C	rs73985541	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	207679289	207679290	chr2:207679290:C:T	rs13003166	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	207770159	207770160	chr2:207770160:A:C	rs984245330	A	C	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	207772241	207772242	chr2:207772242:G:T	rs55650765	G	T	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	207898426	207898427	chr2:207898427:A:G	rs190431139	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	208044457	208044458	chr2:208044458:T:C	rs6723557	T	C	T	Sox1.mouse_HMG_2	0	1	-	3.509883974468573	2.5056477418333714	ATCAAATACATTCAC
chr2	208096699	208096700	chr2:208096700:C:A	rs6713275	C	A	c	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr2	208132359	208132360	chr2:208132360:C:T	rs12464841	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.498205517312834	4.37281786003557	CTGCCTAACATTCTC
chr2	208319509	208319510	chr2:208319510:A:G	rs13399978	A	G	A	Sox1.mouse_HMG_2	7	1	+	3.230980196027114	2.5299253764860374	ATGAATGACTGTCTT
chr2	208319513	208319514	chr2:208319514:T:C	rs13388119	T	C	T	Sox1.mouse_HMG_2	11	1	+	3.230980196027114	-3.6777745832881057	ATGAATGACTGTCTT
chr2	208407813	208407814	chr2:208407814:T:C	rs6747668	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	208985249	208985250	chr2:208985250:C:G	rs16842199	C	G	C	Sox1.mouse_HMG_2	12	1	+	8.986052560378777	2.0856039099124137	ATAAATAGCATTCTT
chr2	209496592	209496593	chr2:209496593:A:G	rs114803681	A	G	A	Sox1.mouse_HMG_2	3	1	+	3.900717956981724	-3.0080368223334957	ATGAATACCTTTCCT
chr2	209530997	209530998	chr2:209530998:T:C	rs6752348	T	C	T	Sox1.mouse_HMG_2	9	1	-	7.984664678174781	1.0759098988595595	TTGTATTTCATTCAT
chr2	210394320	210394321	chr2:210394321:T:C	rs10932331	T	C	T	Sox1.mouse_HMG_2	10	1	+	3.776316045256168	-3.071625533024113	TAGAATACCATTAAC
chr2	210445505	210445506	chr2:210445506:A:G	rs143933409	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	210445529	210445530	chr2:210445530:T:C	chr2:210445530:T:C	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	210798249	210798250	chr2:210798250:C:A	rs67823390	C	A	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	210956319	210956320	chr2:210956320:C:T	rs71422719	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	211145768	211145769	chr2:211145769:A:C	rs11901164	A	C	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	211205201	211205202	chr2:211205202:C:T	rs4673601	C	T	T	Sox1.mouse_HMG_2	4	1	+	4.8092946266425365	0.3699429253493861	CTGACTGACATACAA
chr2	211310378	211310379	chr2:211310379:C:G	rs6727723	C	G	C	Sox1.mouse_HMG_2	5	1	-	4.736436223876445	4.736436223876445	AAGAAGTCCATTCAT
chr2	211352128	211352129	chr2:211352129:A:C	rs150416243	A	C	A	Sox1.mouse_HMG_2	10	1	-	5.125899680366567	2.37330216464147	TTGACAATCATTCAA
chr2	211495520	211495521	chr2:211495521:G:T	rs13028321	G	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	211500884	211500885	chr2:211500885:G:A	rs4131610	G	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	211853418	211853419	chr2:211853419:T:C	rs11687449	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.38459412879592	0.7406018213026871	ATGACTTGCATTAAA
chr2	212005183	212005184	chr2:212005184:G:T	rs67361326	G	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	212015688	212015689	chr2:212015689:A:G	rs73083319	A	G	A	Sox1.mouse_HMG_2	14	1	+	7.834717143037861	7.999358390932809	CTGAATATCACTCAA
chr2	212037613	212037614	chr2:212037614:A:G	rs1546717	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	212249398	212249399	chr2:212249399:T:C	rs28539084	T	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	212325269	212325270	chr2:212325270:A:G	rs4146051	A	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	212407499	212407500	chr2:212407500:C:T	rs111458542	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr2	212516914	212516915	chr2:212516915:T:C	rs7606241	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	212640281	212640282	chr2:212640282:C:T	rs11676119	C	T	C	Sox1.mouse_HMG_2	7	1	+	4.724341096053913	4.263396642346806	ATTAATGCCATTCTC
chr2	212777505	212777506	chr2:212777506:T:C	rs115042827	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	212777510	212777511	chr2:212777511:T:C	rs72935083	T	C	T	Sox1.mouse_HMG_2	14	1	-	6.276527166219301	6.441168414114249	TTAAATCACATTCAA
chr2	212898416	212898417	chr2:212898417:C:T	rs62186482	C	T	c	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr2	213014549	213014550	chr2:213014550:A:G	rs1384397	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	213145994	213145995	chr2:213145995:C:T	rs187643989	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	213175008	213175009	chr2:213175009:T:C	rs4567882	T	C	T	Sox1.mouse_HMG_2	0	1	+	4.44953549352012	4.715478687289552	TTGACTTTCATCCAG
chr2	213187712	213187713	chr2:213187713:A:C	rs56116117	A	C	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	213266591	213266592	chr2:213266592:T:C	rs539705845	T	C	T	Sox1.mouse_HMG_2	0	1	+	7.653302908900201	7.919246102669634	TGGAATTCCAGTCAT
chr2	213941350	213941351	chr2:213941351:T:C	rs953133	T	C	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	213981288	213981289	chr2:213981289:G:A	rs112543422	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	214518764	214518765	chr2:214518765:C:T	rs11678147	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	214593908	214593909	chr2:214593909:T:C	rs7425848	T	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr2	215053064	215053065	chr2:215053065:A:G	rs17430358	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	215296379	215296380	chr2:215296380:T:C	rs16853723	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	215358293	215358294	chr2:215358294:C:T	rs60161262	C	T	T	Sox1.mouse_HMG_2	8	1	+	4.489385044824941	-1.155041645557046	CTGATTAACATTTAC
chr2	215388032	215388033	chr2:215388033:T:C	rs2888354	T	C	t	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	215438472	215438473	chr2:215438473:G:A	rs767398749	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	215526767	215526768	chr2:215526768:T:C	rs1080594	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	215540919	215540920	chr2:215540920:A:G	rs73073815	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	215554673	215554674	chr2:215554674:G:A	rs16854289	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	215557876	215557877	chr2:215557877:A:G	rs16854316	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	215658329	215658330	chr2:215658330:T:C	rs76715926	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	215685125	215685126	chr2:215685126:T:G	rs1356637	T	G	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	215717246	215717247	chr2:215717247:A:G	rs16854789	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	215737320	215737321	chr2:215737321:T:C	rs7577109	T	C	C	Sox1.mouse_HMG_2	1	1	+	9.777113252037749	5.133120944544513	ATGAATTACTTTCAT
chr2	215766829	215766830	chr2:215766830:C:T	rs4674025	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	215910303	215910304	chr2:215910304:A:G	rs79065502	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	216213703	216213704	chr2:216213704:G:A	rs207892	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	216365754	216365755	chr2:216365755:T:C	rs17551014	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	216557605	216557606	chr2:216557606:G:A	rs12328861	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	216714581	216714582	chr2:216714582:C:G	rs2024486	C	G	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr2	216773218	216773219	chr2:216773219:G:C	rs7599100	G	C	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	217104052	217104053	chr2:217104053:A:C	chr2:217104053:A:C	A	C	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr2	217256886	217256887	chr2:217256887:C:T	rs2553027	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	217279733	217279734	chr2:217279734:T:C	rs563062635	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.478238442970145	-2.4305163363450766	TTGAATATCATCCTG
chr2	217450312	217450313	chr2:217450313:G:T	rs7569925	G	T	T	Sox1.mouse_HMG_2	9	1	-	1.830003839389698	8.738758618704919	CTGAATACCCATCAC
chr2	217479323	217479324	chr2:217479324:C:T	rs561625934	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	217602313	217602314	chr2:217602314:A:C	rs934237	A	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	217695083	217695084	chr2:217695084:C:T	rs147114711	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	217750967	217750968	chr2:217750968:G:C	rs73072322	G	C	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	217847725	217847726	chr2:217847726:T:G	rs141901890	T	G	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	217849962	217849963	chr2:217849963:A:C	rs3791978	A	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	218076371	218076372	chr2:218076372:C:G	rs6759925	C	G	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	218294803	218294804	chr2:218294804:T:C	rs4672883	T	C	T	Sox1.mouse_HMG_2	5	1	+	8.650757936872866	1.7420031575576438	ATGAATTCCATTCCA
chr2	218478715	218478716	chr2:218478716:T:C	rs766817588	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.973691996397155	0.3296996889039222	ATGAAAAATATTCAT
chr2	219056477	219056478	chr2:219056478:T:C	rs3100776	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	219109751	219109752	chr2:219109752:C:T	rs74972314	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	219350932	219350933	chr2:219350933:G:T	rs189544674	G	T	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	219420459	219420460	chr2:219420460:C:A	rs41272701	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	219519829	219519830	chr2:219519830:G:A	rs907681	G	A	G	Sox1.mouse_HMG_2	1	1	-	4.967043871158551	9.611036178651785	CCGACTTCCAGTCAC
chr2	219662755	219662756	chr2:219662756:T:G	rs556143726	T	G	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	219691747	219691748	chr2:219691748:C:T	rs79610995	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	219784274	219784275	chr2:219784275:T:A	rs6436167	T	A	A	Sox1.mouse_HMG_2	4	1	-	5.483581864511687	-1.337830904648387	CTGAATACCCTTCTC
chr2	219875827	219875828	chr2:219875828:T:C	rs140669132	T	C	T	Sox1.mouse_HMG_2	3	1	+	4.715950846634968	4.715950846634968	ATGTATCCCATTCAG
chr2	219875858	219875859	chr2:219875859:C:G	rs72953870	C	G	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	219903221	219903222	chr2:219903222:T:G	rs12467371	T	G	T	Sox1.mouse_HMG_2	13	1	-	5.888348457614986	-0.43236755151436135	GAGAATAACATTTAA
chr2	219962061	219962062	chr2:219962062:T:A	rs4281889	T	A	A	Sox1.mouse_HMG_2	1	1	+	6.381934682583405	1.7379423750901717	ATGACCAGCATTCAG
chr2	219988630	219988631	chr2:219988631:T:C	rs11674441	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	220104810	220104811	chr2:220104811:G:T	rs4368319	G	T	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	220105416	220105417	chr2:220105417:A:G	rs12992951	A	G	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	220154736	220154737	chr2:220154737:G:A	rs10932835	G	A	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	220337951	220337952	chr2:220337952:C:T	rs1454543	C	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	220431471	220431472	chr2:220431472:T:C	rs79350224	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	220496579	220496580	chr2:220496580:C:A	rs9789718	C	A	C	Sox1.mouse_HMG_2	8	1	+	2.9557004828776736	-1.893796332634424	ATGATTTACCTTCAT
chr2	220812108	220812109	chr2:220812109:T:C	chr2:220812109:T:C	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	220840936	220840937	chr2:220840937:C:T	rs16861825	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	220881510	220881511	chr2:220881511:C:T	rs62188382	C	T	C	Sox1.mouse_HMG_2	7	1	-	7.536423806043835	8.237478625584911	AAAAATAGCATTCAT
chr2	221216735	221216736	chr2:221216736:C:T	rs12476870	C	T	C	Sox1.mouse_HMG_2	10	1	-	3.796545275173016	-0.29879878738216836	ATGAAAAACAGTCTC
chr2	221335484	221335485	chr2:221335485:G:A	rs934286	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	221372926	221372927	chr2:221372927:G:A	rs62178586	G	A	G	Sox1.mouse_HMG_2	14	1	-	2.9605265137470504	3.8351388564697864	ATGAATGCCATGCGC
chr2	221372928	221372929	chr2:221372929:G:A	rs116947520	G	A	G	Sox1.mouse_HMG_2	12	1	-	2.9605265137470504	-1.7120605899212047	ATGAATGCCATGCGC
chr2	221435206	221435207	chr2:221435207:G:A	rs3770201	G	A	G	Sox1.mouse_HMG_2	0	1	+	8.07182219986147	9.076058432496671	GTGTATTGCATTCAT
chr2	221435235	221435236	chr2:221435236:G:A	rs3770200	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr2	221478084	221478085	chr2:221478085:A:T	rs7566787	A	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	221605924	221605925	chr2:221605925:T:C	rs6711301	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.465939034576782	-2.442815744738438	GGCAATTACATTCAC
chr2	221638051	221638052	chr2:221638052:C:T	rs57427456	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	221638063	221638064	chr2:221638064:G:A	rs55814471	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	222000306	222000307	chr2:222000307:A:G	rs547385151	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	222085957	222085958	chr2:222085958:G:A	rs348998	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	222204905	222204906	chr2:222204906:T:C	rs13017777	T	C	T	Sox1.mouse_HMG_2	4	1	-	7.395125581148443	0.5737128119883692	TTGAATAAAATTCTG
chr2	222702296	222702297	chr2:222702297:A:G	rs951997	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.6989963718391685	-3.2097584074760523	CTCAATATCGTTCAT
chr2	222702306	222702307	chr2:222702307:C:T	rs1374536	C	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	222819863	222819864	chr2:222819864:G:A	rs114297206	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	222900772	222900773	chr2:222900773:C:T	rs2119160	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	223009170	223009171	chr2:223009171:C:T	rs59293542	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	223009187	223009188	chr2:223009188:G:T	rs57197851	G	T	G	Sox1.mouse_HMG_2	2	1	+	5.478170832360895	-1.4185234992618168	ATGACAGACATTCAA
chr2	223076801	223076802	chr2:223076802:G:A	rs77573952	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	223204117	223204118	chr2:223204118:G:C	rs4674760	G	C	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	223538129	223538130	chr2:223538130:T:C	rs7581506	T	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	223539078	223539079	chr2:223539079:T:C	rs112507553	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr2	223560023	223560024	chr2:223560024:A:G	rs11674445	A	G	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	223590157	223590158	chr2:223590158:A:G	rs76358181	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	223599518	223599519	chr2:223599519:G:T	rs16864977	G	T	G	Sox1.mouse_HMG_2	2	1	+	4.913268571869247	-1.9834257597534644	TTGCATAGCATTCTC
chr2	223642663	223642664	chr2:223642664:G:A	rs75403103	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	223699881	223699882	chr2:223699882:C:T	rs114734917	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	223699917	223699918	chr2:223699918:C:A	rs79263056	C	A	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	223747630	223747631	chr2:223747631:T:C	rs649569	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	223747635	223747636	chr2:223747636:G:A	rs76924583	G	A	G	Sox1.mouse_HMG_2	14	1	-	9.928140068369329	10.802752411092063	TTCAATACCATTCAC
chr2	223815257	223815258	chr2:223815258:A:G	rs13382611	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	223833006	223833007	chr2:223833007:C:T	rs112763884	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	224219855	224219856	chr2:224219856:T:G	rs16865681	T	G	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	224347712	224347713	chr2:224347713:G:T	rs189223200	G	T	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	224411950	224411951	chr2:224411951:T:G	rs148181519	T	G	T	Sox1.mouse_HMG_2	12	1	+	3.9817015537049074	1.7538400069067985	AGGACTTGCATTTAT
chr2	224780920	224780921	chr2:224780921:G:A	rs114057841	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr2	224869800	224869801	chr2:224869801:T:C	rs78386402	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr2	224870296	224870297	chr2:224870297:C:A	rs116691373	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr2	224884608	224884609	chr2:224884609:G:A	rs6751295	G	A	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	224910210	224910211	chr2:224910211:G:C	rs138792916	G	C	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr2	225283362	225283363	chr2:225283363:G:A	rs72966663	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	225452646	225452647	chr2:225452647:A:T	rs76264800	A	T	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr2	226031972	226031973	chr2:226031973:A:G	rs541288727	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr2	226078788	226078789	chr2:226078789:A:G	rs1357392	A	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	226248037	226248038	chr2:226248038:C:T	rs2943654	C	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	226326268	226326269	chr2:226326269:G:T	rs60876026	G	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	226415152	226415153	chr2:226415153:C:T	rs7582958	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr2	226431355	226431356	chr2:226431356:G:A	rs12694698	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr2	226651211	226651212	chr2:226651212:C:T	rs145719688	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	227058241	227058242	chr2:227058242:G:C	rs6436647	G	C	G	Sox1.mouse_HMG_2	7	1	-	4.1199023627515245	3.81553226387852	AGGAATACCATCCAG
chr2	227058256	227058257	chr2:227058257:A:G	rs6734191	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	227129979	227129980	chr2:227129980:C:A	chr2:227129980:C:A	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	227270914	227270915	chr2:227270915:C:T	rs28381984	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	227392849	227392850	chr2:227392850:A:C	rs34185810	A	C	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	227406865	227406866	chr2:227406866:T:C	rs147129548	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	227406873	227406874	chr2:227406874:T:G	rs76549710	T	G	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	227423354	227423355	chr2:227423355:G:C	rs34493504	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr2	227423545	227423546	chr2:227423546:A:G	rs34730186	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr2	227890763	227890764	chr2:227890764:T:A	rs1715840	T	A	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	227934079	227934080	chr2:227934080:T:G	rs1721373	T	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr2	228126921	228126922	chr2:228126922:T:C	rs7577229	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	228443929	228443930	chr2:228443930:G:A	rs2194551	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	228443937	228443938	chr2:228443938:G:C	rs58276054	G	C	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	228484958	228484959	chr2:228484959:C:G	rs6761257	C	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr2	228875112	228875113	chr2:228875113:G:T	rs11893007	G	T	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	229135337	229135338	chr2:229135338:A:G	rs10153935	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr2	229142402	229142403	chr2:229142403:G:A	rs13411207	G	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	229408589	229408590	chr2:229408590:A:G	chr2:229408590:A:G	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	229481990	229481991	chr2:229481991:C:A	rs12476610	C	A	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	229849308	229849309	chr2:229849309:A:G	rs1372086	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	229974550	229974551	chr2:229974551:T:C	rs35069102	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	230356376	230356377	chr2:230356377:C:G	rs4972948	C	G	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	230565261	230565262	chr2:230565262:G:A	rs17354508	G	A	.	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	230565668	230565669	chr2:230565669:A:G	rs7587870	A	G	.	Sox1.mouse_HMG_2	6	1	+	4.339202867048543	2.8990254451799036	CTCACTACCATTCTG
chr2	230571117	230571118	chr2:230571118:T:A	rs11694292	T	A	.	Sox1.mouse_HMG_2	1	1	+	2.7305744994361154	-1.9134178080571185	ATGTCTCACATTCAG
chr2	230583101	230583102	chr2:230583102:C:A	rs74678247	C	A	.	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	230607831	230607832	chr2:230607832:G:A	rs1305968	G	A	A	Sox1.mouse_HMG_2	12	1	-	2.731144991232641	-1.9414421124356136	CTGAGTACCCTTCAT
chr2	230654408	230654409	chr2:230654409:A:G	rs7564948	A	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	230809767	230809768	chr2:230809768:T:C	rs113183067	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	230856008	230856009	chr2:230856009:G:A	rs7576607	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr2	230920310	230920311	chr2:230920311:A:G	rs16827668	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.526695483222377	-3.3212460950579037	GTGAATTCAATGCAT
chr2	230986846	230986847	chr2:230986847:A:T	rs73099165	A	T	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr2	231171078	231171079	chr2:231171079:C:T	rs2032953	C	T	T	Sox1.mouse_HMG_2	0	1	+	4.848147386528506	4.5822041927590735	CTGATTTACATTCTG
chr2	231187021	231187022	chr2:231187022:A:T	rs55820201	A	T	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	231212361	231212362	chr2:231212362:A:G	rs5018532	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	231227234	231227235	chr2:231227235:C:G	rs6437008	C	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	231356901	231356902	chr2:231356902:C:T	rs61485321	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	231366217	231366218	chr2:231366218:T:A	rs61467008	T	A	t	Sox1.mouse_HMG_2	11	1	+	4.769583503628787	-2.1391712756864343	GGGAATATCAGTCTT
chr2	231514743	231514744	chr2:231514744:C:G	rs74576875	C	G	G	Sox1.mouse_HMG_2	10	1	+	4.027523147865157	8.12286721042034	GTGAATAGCACTCGT
chr2	232263584	232263585	chr2:232263585:C:G	rs80329654	C	G	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr2	232364611	232364612	chr2:232364612:T:C	rs883160	T	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	232680833	232680834	chr2:232680834:C:A	rs13028442	C	A	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	232718051	232718052	chr2:232718052:C:T	rs35212961	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	232718082	232718083	chr2:232718083:T:G	rs6761324	T	G	t	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	232886666	232886667	chr2:232886667:A:G	rs2592126	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	232899542	232899543	chr2:232899543:T:C	rs7575584	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	232900168	232900169	chr2:232900169:C:T	rs111163656	C	T	-	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr2	233092542	233092543	chr2:233092543:A:T	rs6756729	A	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr2	233250192	233250193	chr2:233250193:C:T	rs10210302	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	233297793	233297794	chr2:233297794:T:C	rs73998351	T	C	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	233486645	233486646	chr2:233486646:A:G	rs76693813	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	233501560	233501561	chr2:233501561:T:A	rs13405703	T	A	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr2	233636647	233636648	chr2:233636648:G:A	rs11683356	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr2	233702265	233702266	chr2:233702266:A:G	rs17862866	A	G	a	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	233799982	233799983	chr2:233799983:G:A	rs13018934	G	A	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	233807779	233807780	chr2:233807780:G:A	rs11563241	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr2	233857434	233857435	chr2:233857435:C:T	rs528971	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	234029273	234029274	chr2:234029274:A:G	rs17864791	A	G	A	Sox1.mouse_HMG_2	4	1	+	7.069256661772886	0.24784389261281473	AGGAATGACATTCTC
chr2	234286043	234286044	chr2:234286044:C:T	rs6745846	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	234286054	234286055	chr2:234286055:C:G	rs6745850	C	G	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	234404874	234404875	chr2:234404875:G:C	rs13382355	G	C	C	Sox1.mouse_HMG_2	0	1	+	5.146890853068088	5.482250879984932	GTGAATACCTGTCAA
chr2	234480636	234480637	chr2:234480637:G:C	rs6431264	G	C	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	234480643	234480644	chr2:234480644:C:A	rs6431265	C	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	234486570	234486571	chr2:234486571:C:T	rs62184404	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	234486571	234486572	chr2:234486572:A:C	rs6758801	A	C	A	Sox1.mouse_HMG_2	14	1	-	6.411255924068019	5.25818780728028	ATTACTGCCATTCAT
chr2	234567247	234567248	chr2:234567248:A:G	rs940942	A	G	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr2	234603186	234603187	chr2:234603187:C:G	rs74348493	C	G	C	Sox1.mouse_HMG_2	2	1	-	5.363997387547677	-0.028619547298760817	CTGATTAACATTTAT
chr2	234603194	234603195	chr2:234603195:G:A	rs13426696	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr2	234809116	234809117	chr2:234809117:T:C	rs920574	T	C	T	Sox1.mouse_HMG_2	6	1	-	5.079699679171908	3.639522257303269	TGGAATACAATTCAA
chr2	234823753	234823754	chr2:234823754:G:A	rs112789535	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr2	234825739	234825740	chr2:234825740:C:T	rs72979638	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	234965786	234965787	chr2:234965787:G:A	rs114739058	G	A	G	Sox1.mouse_HMG_2	13	1	+	3.6020386597387013	8.548156347511348	GTGAGTAACATTCGG
chr2	235002450	235002451	chr2:235002451:A:G	rs75135166	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	235002495	235002496	chr2:235002496:C:T	rs114761519	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr2	235147441	235147442	chr2:235147442:A:G	rs10171708	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	235147447	235147448	chr2:235147448:A:T	rs56987422	A	T	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr2	235160598	235160599	chr2:235160599:T:C	rs7581788	T	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr2	235164325	235164326	chr2:235164326:C:A	rs111779078	C	A	C	Sox1.mouse_HMG_2	2	1	-	7.808010239651068	0.9113159080283567	CTGTATGGCATTCAT
chr2	235287541	235287542	chr2:235287542:G:A	rs13424053	G	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	235709424	235709425	chr2:235709425:T:C	rs13022599	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	235799560	235799561	chr2:235799561:C:T	rs73998921	C	T	T	Sox1.mouse_HMG_2	1	1	-	5.538354586892067	5.842825765970643	CGGAATCGCATTCAA
chr2	235848043	235848044	chr2:235848044:T:G	rs4663211	T	G	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr2	235938673	235938674	chr2:235938674:C:T	rs10208807	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	235990474	235990475	chr2:235990475:A:G	rs146206872	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr2	236101728	236101729	chr2:236101729:G:A	rs536595335	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr2	236122138	236122139	chr2:236122139:C:G	rs6753212	C	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	236236520	236236521	chr2:236236521:T:C	rs62190972	T	C	T	Sox1.mouse_HMG_2	13	1	-	7.107978925642711	2.161861237870063	GTGATTGACATTCAG
chr2	236336400	236336401	chr2:236336401:A:C	rs62192360	A	C	A	Sox1.mouse_HMG_2	6	1	+	7.851433345936659	3.499018343248293	ATTACTACCATTCAT
chr2	236342750	236342751	chr2:236342751:T:C	rs72978641	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.712280648361406	3.708044415726202	ATGAATGCCATCCTC
chr2	236343480	236343481	chr2:236343481:G:A	rs72978644	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr2	236559805	236559806	chr2:236559806:C:A	rs13383532	C	A	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr2	236588593	236588594	chr2:236588594:A:G	rs11901793	A	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr2	236608907	236608908	chr2:236608908:G:A	rs11691679	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	236608926	236608927	chr2:236608927:G:C	rs73131743	G	C	G	Sox1.mouse_HMG_2	7	1	-	5.760497891609082	5.456127792736076	TGAAATTCCATTCAT
chr2	236721410	236721411	chr2:236721411:G:A	rs113525917	G	A	g	Sox1.mouse_HMG_2	1	1	+	2.098190745319676	2.4026619243982514	CGGAGTGCCATTCAG
chr2	236824332	236824333	chr2:236824333:T:A	rs78101493	T	A	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	236861798	236861799	chr2:236861799:T:C	rs7578264	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.623390297876944	-0.3227273898957042	ATAAATCACAGTCAG
chr2	236988198	236988199	chr2:236988199:T:A	rs893420	T	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr2	236996687	236996688	chr2:236996688:G:T	rs11677911	G	T	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr2	237013080	237013081	chr2:237013081:C:T	rs2573723	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr2	237299012	237299013	chr2:237299013:G:A	rs76371498	G	A	G	Sox1.mouse_HMG_2	6	1	+	3.8327930576706244	5.272970479539263	AGGAATGCCATGCAT
chr2	237315893	237315894	chr2:237315894:G:A	rs4496285	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr2	237315977	237315978	chr2:237315978:A:G	rs2316146	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	237584538	237584539	chr2:237584539:G:C	rs7597767	G	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	237599455	237599456	chr2:237599456:T:C	rs1316476	T	C	t	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	237638836	237638837	chr2:237638837:A:G	rs13014795	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	237638874	237638875	chr2:237638875:A:G	rs1038989	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr2	237704724	237704725	chr2:237704725:C:T	rs150979408	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	237745215	237745216	chr2:237745216:T:G	chr2:237745216:T:G	T	G	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	237755602	237755603	chr2:237755603:A:G	rs3820806	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr2	237792117	237792118	chr2:237792118:G:A	rs62196076	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	237903521	237903522	chr2:237903522:A:C	rs4663805	A	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr2	237968766	237968767	chr2:237968767:A:C	rs62194508	A	C	A	Sox1.mouse_HMG_2	13	1	-	5.179211765638679	3.4274576310243234	CTGAACAGCATTCTC
chr2	237968771	237968772	chr2:237968772:G:A	rs114265736	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.179211765638679	-0.4652149247433074	CTGAACAGCATTCTC
chr2	238016127	238016128	chr2:238016128:C:T	rs62194542	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	238163151	238163152	chr2:238163152:G:A	rs13415808	G	A	G	Sox1.mouse_HMG_2	8	1	-	2.423825625271563	-3.220601065110423	CTGACTTCCAGGCAG
chr2	238163171	238163172	chr2:238163172:G:A	rs7576813	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr2	238580150	238580151	chr2:238580151:C:G	rs11694159	C	G	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	238580160	238580161	chr2:238580161:C:A	rs11694162	C	A	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr2	238585548	238585549	chr2:238585549:A:G	rs55988320	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr2	238710975	238710976	chr2:238710976:T:C	rs74499060	T	C	t	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	238763403	238763404	chr2:238763404:G:T	rs55832620	G	T	G	Sox1.mouse_HMG_2	8	1	-	4.879970656724459	0.03047384121235963	CTGAAAACCATTTAT
chr2	238834834	238834835	chr2:238834835:T:A	rs12474801	T	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	238963170	238963171	chr2:238963171:C:A	rs61325070	C	A	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr2	239027348	239027349	chr2:239027349:T:C	rs4075017	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr2	239167383	239167384	chr2:239167384:G:A	rs34909752	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr2	239179914	239179915	chr2:239179915:T:C	rs551326	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr2	239192671	239192672	chr2:239192672:C:T	rs680564	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr2	239202571	239202572	chr2:239202572:A:C	rs7561354	A	C	-	Sox1.mouse_HMG_2	5	1	-	5.659404708175449	-1.2493500711397723	TTGAATACCAGCCAC
chr2	239221167	239221168	chr2:239221168:T:C	rs617829	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr2	239313205	239313206	chr2:239313206:G:A	rs10200850	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr2	239501117	239501118	chr2:239501118:G:A	rs76121090	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr2	239501141	239501142	chr2:239501142:C:T	rs1248714637	C	T	C	Sox1.mouse_HMG_2	2	1	-	2.088465598354718	-2.5569369346614974	GTGGCTTCCAGTCAG
chr2	239558621	239558622	chr2:239558622:G:A	rs62183086	G	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr2	239561239	239561240	chr2:239561240:G:A	rs9636383	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr2	239586639	239586640	chr2:239586640:A:G	rs79259920	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	239589893	239589894	chr2:239589894:C:A	rs113970033	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	239756123	239756124	chr2:239756124:G:C	rs744849	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr2	239760381	239760382	chr2:239760382:C:T	rs4851992	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	239778781	239778782	chr2:239778782:G:A	rs34240215	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr2	239811056	239811057	chr2:239811057:A:G	rs62183198	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.8028629625368637	-1.1432547252357845	CTCAATGCCATTTAG
chr2	239890431	239890432	chr2:239890432:G:A	rs868482481	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	239896730	239896731	chr2:239896731:C:T	rs6737883	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr2	240125429	240125430	chr2:240125430:C:T	rs79131048	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr2	240443863	240443864	chr2:240443864:C:T	rs7575970	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr2	240834734	240834735	chr2:240834735:T:C	rs35516027	T	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr2	240886720	240886721	chr2:240886721:C:T	rs11680484	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr2	240886721	240886722	chr2:240886722:G:A	rs13422330	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr2	240893446	240893447	chr2:240893447:C:A	rs13422506	C	A	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr2	241018259	241018260	chr2:241018260:A:G	rs4497870	A	G	A	Sox1.mouse_HMG_2	10	1	-	8.084379122714514	1.2364375444342324	CTGACTTGAATTCAT
chr2	241088866	241088867	chr2:241088867:C:T	rs10933529	C	T	T	Sox1.mouse_HMG_2	5	1	+	3.1252185427881933	10.033973322103416	GTGAACGGCATTCTG
chr2	241507252	241507253	chr2:241507253:A:T	rs62190459	A	T	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr2	241611954	241611955	chr2:241611955:T:C	rs78065183	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr2	241611958	241611959	chr2:241611959:G:A	rs75334585	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr2	241756913	241756914	chr2:241756914:A:G	rs35350837	A	G	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr2	241896989	241896990	chr2:241896990:C:G	rs28490306	C	G	.	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr2	241977544	241977545	chr2:241977545:G:A	rs58331416	G	A	.	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr2	241990887	241990888	chr2:241990888:A:G	chr2:241990888:A:G	A	G	.	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr20	291795	291796	chr20:291796:G:A	rs6075791	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr20	423008	423009	chr20:423009:T:G	rs6051908	T	G	G	Sox1.mouse_HMG_2	14	1	+	4.0633308190907655	2.9102627023030267	GTGTATAGAATTCAT
chr20	461666	461667	chr20:461667:T:C	rs573527183	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr20	461937	461938	chr20:461938:G:T	rs80112339	G	T	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr20	550899	550900	chr20:550900:A:T	rs60757848	A	T	A	Sox1.mouse_HMG_2	6	1	-	5.370521108315941	6.211526543057337	CTGAATTTGAGTCAA
chr20	558373	558374	chr20:558374:T:G	rs397883	T	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr20	653756	653757	chr20:653757:A:G	rs77406701	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr20	653789	653790	chr20:653790:A:C	rs6053728	A	C	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr20	861972	861973	chr20:861973:G:A	rs4816027	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr20	861974	861975	chr20:861975:G:A	rs4816028	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr20	915655	915656	chr20:915656:T:C	rs502522	T	C	t	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr20	956449	956450	chr20:956450:C:T	rs62187516	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr20	956623	956624	chr20:956624:T:C	rs6118354	T	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	956629	956630	chr20:956630:G:A	rs6077441	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr20	1017739	1017740	chr20:1017740:T:C	rs926823	T	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr20	1020194	1020195	chr20:1020195:G:C	rs6056646	G	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr20	1375799	1375800	chr20:1375800:T:C	rs147693071	T	C	T	Sox1.mouse_HMG_2	3	1	-	3.0897518053083193	-3.8190029740068994	GGGAAGAGCATTCAC
chr20	1419340	1419341	chr20:1419341:C:G	rs2144543	C	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	1480294	1480295	chr20:1480295:G:A	rs1884387	G	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr20	1494972	1494973	chr20:1494973:T:G	rs6042602	T	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr20	1500022	1500023	chr20:1500023:T:C	rs6042650	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr20	1516976	1516977	chr20:1516977:T:C	rs8182997	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr20	1702397	1702398	chr20:1702398:T:G	rs6111041	T	G	t	Sox1.mouse_HMG_2	1	1	+	5.037896754275135	0.08943326770332505	TTAAAAAACATTCAT
chr20	1825675	1825676	chr20:1825676:T:C	rs112072054	T	C	T	Sox1.mouse_HMG_2	9	1	-	9.088292140148182	2.1795373608329607	TAGAATTGCATTCAA
chr20	1961253	1961254	chr20:1961254:G:C	rs56080002	G	C	G	Sox1.mouse_HMG_2	4	1	-	4.218227263485333	-0.22112443780781882	CTGACTTCCATTTTG
chr20	2007378	2007379	chr20:2007379:C:T	rs2422669	C	T	T	Sox1.mouse_HMG_2	10	1	-	3.291886177721083	-0.8034578848341005	TTAAATCCCAGTCAG
chr20	2045229	2045230	chr20:2045230:A:T	rs1418046	A	T	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr20	2204673	2204674	chr20:2204674:T:C	rs6137318	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	2300605	2300606	chr20:2300606:G:T	rs214780	G	T	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr20	2452042	2452043	chr20:2452043:C:G	rs7261241	C	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr20	2539355	2539356	chr20:2539356:T:C	rs79572526	T	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr20	2901277	2901278	chr20:2901278:C:T	rs1161235	C	T	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr20	2901316	2901317	chr20:2901317:A:G	rs76714516	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr20	3304478	3304479	chr20:3304479:A:T	rs2254916	A	T	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr20	3454827	3454828	chr20:3454828:C:T	rs6139130	C	T	N	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr20	3931711	3931712	chr20:3931712:C:T	rs241602	C	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr20	4014867	4014868	chr20:4014868:A:T	rs112232697	A	T	a	Sox1.mouse_HMG_2	12	1	+	5.541492906009305	7.769354452807414	GTGACTTTCATTAAT
chr20	4014878	4014879	chr20:4014879:C:A	rs778343349	C	A	c	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr20	4057075	4057076	chr20:4057076:G:A	rs1891427	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr20	4138416	4138417	chr20:4138417:C:T	rs13039640	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr20	4428190	4428191	chr20:4428191:C:T	rs71333952	C	T	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr20	4541912	4541913	chr20:4541913:T:C	rs6133139	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr20	4708589	4708590	chr20:4708590:T:C	rs6052778	T	C	t	Sox1.mouse_HMG_2	4	1	-	3.669998287084879	-3.151414482075193	GTGCATACCATTTAC
chr20	4730992	4730993	chr20:4730993:A:G	rs73896142	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr20	4731072	4731073	chr20:4731073:A:G	rs73896143	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr20	4731108	4731109	chr20:4731109:G:T	rs117098605	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr20	4947239	4947240	chr20:4947240:A:G	rs1519864	A	G	-	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr20	4951072	4951073	chr20:4951073:G:A	rs138469376	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr20	4992799	4992800	chr20:4992800:G:A	rs113321431	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	5145740	5145741	chr20:5145741:A:G	rs16990673	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr20	5363417	5363418	chr20:5363418:T:C	rs6085132	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr20	5950268	5950269	chr20:5950269:C:G	rs41282140	C	G	C	Sox1.mouse_HMG_2	0	1	+	2.657200082571439	2.3218400556545946	CTGACTTACTTTCTC
chr20	5969785	5969786	chr20:5969786:G:A	rs55965616	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr20	6069831	6069832	chr20:6069832:C:T	rs6053870	C	T	C	Sox1.mouse_HMG_2	8	1	+	8.227360414581938	2.582933724199952	ATGGATTCCATTCAG
chr20	6266708	6266709	chr20:6266709:T:C	rs192783266	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.328869506636886	0.684877199143652	ATGACTTCCAGTTAG
chr20	6430912	6430913	chr20:6430913:G:A	rs6139982	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr20	6458440	6458441	chr20:6458441:G:C	rs6054284	G	C	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr20	6574813	6574814	chr20:6574814:A:G	rs6107836	A	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr20	6632184	6632185	chr20:6632185:A:G	rs1884897	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	6691018	6691019	chr20:6691019:C:T	rs6054462	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr20	6755541	6755542	chr20:6755542:A:G	rs235730	A	G	G	Sox1.mouse_HMG_2	14	1	-	8.995220996964187	8.120608654241453	CTGAATTGCATTCCT
chr20	6829093	6829094	chr20:6829094:G:T	rs73895332	G	T	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr20	7195708	7195709	chr20:7195709:A:G	rs16993133	A	G	G	Sox1.mouse_HMG_2	13	1	-	4.356009621572201	1.2296571656011461	TTGAATGGCATTGTT
chr20	7308271	7308272	chr20:7308272:G:A	rs6085989	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.879970656724461	-0.7644560336575269	CTGAATACCATATAT
chr20	7380181	7380182	chr20:7380182:C:T	rs73080665	C	T	c	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr20	7888808	7888809	chr20:7888809:T:C	rs2294305	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr20	8020824	8020825	chr20:8020825:T:C	rs6055463	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr20	8038655	8038656	chr20:8038656:C:T	rs8184867	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr20	8061167	8061168	chr20:8061168:A:G	rs6140515	A	G	G	Sox1.mouse_HMG_2	1	1	-	7.324298297999891	2.680305990506656	ATGAATTAAATTCTA
chr20	8062312	8062313	chr20:8062313:T:C	rs16994386	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr20	8073904	8073905	chr20:8073905:C:T	rs6140524	C	T	C	Sox1.mouse_HMG_2	0	1	+	7.22919632133383	6.963253127564397	CTCACTAGCATTCAG
chr20	8252795	8252796	chr20:8252796:G:A	rs6140563	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr20	8252797	8252798	chr20:8252798:A:C	rs6086377	A	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr20	8332195	8332196	chr20:8332196:G:A	rs16994669	G	A	G	Sox1.mouse_HMG_2	14	1	+	2.119455526398556	1.9548142785036084	CTGACTTGCTGTCAG
chr20	8334669	8334670	chr20:8334670:A:G	rs6055748	A	G	A	Sox1.mouse_HMG_2	13	1	+	4.830459721126561	-0.11565796664608716	TTTAATTCCAGTCAC
chr20	8536857	8536858	chr20:8536858:G:A	rs6055889	G	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr20	8646436	8646437	chr20:8646437:C:A	rs138904904	C	A	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr20	8744221	8744222	chr20:8744222:T:C	rs6039247	T	C	T	Sox1.mouse_HMG_2	1	1	-	7.364508137370672	7.0600369582920965	CAGAATAAAATTCAT
chr20	8750127	8750128	chr20:8750128:A:G	rs17446965	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr20	8757322	8757323	chr20:8757323:T:C	rs931643785	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr20	8774335	8774336	chr20:8774336:C:A	rs2235614	C	A	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr20	8903899	8903900	chr20:8903900:G:T	rs4816106	G	T	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr20	8964425	8964426	chr20:8964426:T:A	rs62195410	T	A	A	Sox1.mouse_HMG_2	6	1	-	9.744128423880456	8.903122989139058	TTGAATATCATTTAA
chr20	8964451	8964452	chr20:8964452:A:C	rs67308886	A	C	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr20	9110309	9110310	chr20:9110310:A:G	rs13040490	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	9200283	9200284	chr20:9200284:G:A	rs62194769	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr20	9235764	9235765	chr20:9235765:C:T	rs74983667	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr20	9311288	9311289	chr20:9311289:C:T	rs117156963	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr20	9311476	9311477	chr20:9311477:A:G	rs6056522	A	G	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	9363854	9363855	chr20:9363855:A:C	rs145574775	A	C	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr20	9454052	9454053	chr20:9454053:T:A	rs80188871	T	A	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr20	9507995	9507996	chr20:9507996:T:C	rs57801842	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr20	9535687	9535688	chr20:9535688:G:A	rs67573224	G	A	G	Sox1.mouse_HMG_2	6	1	+	11.15064590626779	12.59082332813643	GTGACTGCCATTCAG
chr20	9572147	9572148	chr20:9572148:A:G	rs17406954	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr20	9683890	9683891	chr20:9683891:G:T	rs2143256	G	T	G	Sox1.mouse_HMG_2	12	1	-	2.868358472722527	-4.032090177743836	ATGCACTACATTCAT
chr20	9683916	9683917	chr20:9683917:T:G	rs2143255	T	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr20	10063823	10063824	chr20:10063824:C:A	rs79828233	C	A	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr20	10111993	10111994	chr20:10111994:T:C	rs6077654	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr20	10332256	10332257	chr20:10332257:C:A	rs6039859	C	A	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr20	10453160	10453161	chr20:10453161:A:G	rs4308167	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	10466931	10466932	chr20:10466932:A:G	rs6039959	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr20	10518930	10518931	chr20:10518931:C:T	rs34198940	C	T	T	Sox1.mouse_HMG_2	14	1	-	3.491941228298119	3.327299980403171	ATGACTACCTTTCTG
chr20	10596901	10596902	chr20:10596902:G:A	rs72623523	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	10596914	10596915	chr20:10596915:T:G	rs76749488	T	G	T	Sox1.mouse_HMG_2	13	1	-	5.232067162449683	-1.0886488466796647	TTGCATTTCAGTCAT
chr20	10665243	10665244	chr20:10665244:C:T	rs79854387	C	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr20	10761641	10761642	chr20:10761642:C:T	rs6074184	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr20	10971009	10971010	chr20:10971010:T:C	rs6077985	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr20	10987969	10987970	chr20:10987970:G:A	rs6077995	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr20	11384992	11384993	chr20:11384993:C:G	rs6134232	C	G	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	11432501	11432502	chr20:11432502:G:A	rs6078176	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	11446081	11446082	chr20:11446082:A:G	rs10485749	A	G	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr20	11564610	11564611	chr20:11564611:C:T	rs4381840	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr20	11850314	11850315	chr20:11850315:C:A	rs2327625	C	A	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	11869691	11869692	chr20:11869692:T:C	rs803877	T	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr20	12451138	12451139	chr20:12451139:A:G	rs2423670	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr20	12997868	12997869	chr20:12997869:C:T	rs6074541	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr20	13010428	13010429	chr20:13010429:G:A	rs76598140	G	A	G	Sox1.mouse_HMG_2	13	1	+	10.735514110945118	15.681631798717765	GTGAATTACATTCGT
chr20	13029916	13029917	chr20:13029917:C:T	rs75249282	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	13273701	13273702	chr20:13273702:G:A	rs80147809	G	A	G	Sox1.mouse_HMG_2	2	1	-	5.611415648396752	4.107338251620478	GCCAATAACATTCAC
chr20	13304667	13304668	chr20:13304668:T:C	rs73082233	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr20	13304678	13304679	chr20:13304679:G:C	rs73082235	G	C	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr20	13397840	13397841	chr20:13397841:A:G	rs6079043	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr20	13426398	13426399	chr20:13426399:T:A	rs117727336	T	A	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr20	13610468	13610469	chr20:13610469:G:A	rs111417551	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr20	13858726	13858727	chr20:13858727:G:A	rs1305167494	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr20	13941894	13941895	chr20:13941895:T:G	rs1321242	T	G	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr20	14518483	14518484	chr20:14518484:C:T	rs35658161	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr20	14562655	14562656	chr20:14562656:T:C	rs146928122	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr20	14826606	14826607	chr20:14826607:C:T	rs77009653	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr20	14907529	14907530	chr20:14907530:G:A	rs6110463	G	A	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr20	14920423	14920424	chr20:14920424:C:T	rs2423845	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr20	14953947	14953948	chr20:14953948:T:C	rs1028741	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr20	15032862	15032863	chr20:15032863:A:G	rs6043066	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr20	15363903	15363904	chr20:15363904:T:C	rs6079787	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.299102423800388	-3.6096523555148323	AGGAATAGCAGTTAG
chr20	15516622	15516623	chr20:15516623:A:G	rs6043342	A	G	A	Sox1.mouse_HMG_2	11	1	-	4.516587083419594	-2.3921676958956257	AGGAAAAACATTCAG
chr20	15597176	15597177	chr20:15597177:G:A	rs117011844	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr20	15610000	15610001	chr20:15610001:G:T	rs460131	G	T	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr20	15629595	15629596	chr20:15629596:G:C	rs200763	G	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr20	15645993	15645994	chr20:15645994:A:C	rs455509	A	C	C	Sox1.mouse_HMG_2	11	1	-	8.729362689572758	1.8206079102575394	GAGAATACCAGTCAT
chr20	15834873	15834874	chr20:15834874:C:T	rs2191521	C	T	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr20	15855084	15855085	chr20:15855085:G:A	rs6074958	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr20	15900084	15900085	chr20:15900085:T:C	rs6043605	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr20	15900130	15900131	chr20:15900131:C:T	rs6043606	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr20	15913944	15913945	chr20:15913945:C:G	rs78034776	C	G	C	Sox1.mouse_HMG_2	10	1	-	6.410802926926722	2.3154588643715384	ATGATTTGCAGTCAT
chr20	16065201	16065202	chr20:16065202:T:C	rs8122540	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr20	16092305	16092306	chr20:16092306:T:A	rs6135667	T	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	16117214	16117215	chr20:16117215:T:C	rs6080128	T	C	T	Sox1.mouse_HMG_2	3	1	-	6.766251549874368	-0.14250322944085247	ATAAATACGATTCAT
chr20	16385842	16385843	chr20:16385843:A:G	rs34419300	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr20	16547642	16547643	chr20:16547643:G:A	rs1997902	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.804143031465247	2.1315559277969927	GGGAATAGCATTCTC
chr20	16679370	16679371	chr20:16679371:G:T	rs1885571	G	T	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr20	16694596	16694597	chr20:16694597:C:A	rs6044241	C	A	C	Sox1.mouse_HMG_2	8	1	+	5.941079786214696	1.0915829707025968	CTGAATAACAATCTC
chr20	16694609	16694610	chr20:16694610:T:C	rs6044242	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr20	16694669	16694670	chr20:16694670:C:T	rs11905336	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr20	16749876	16749877	chr20:16749877:T:C	rs6135878	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.180816643992033	-0.7653010437806151	AAGAATAGCAATCAG
chr20	16761199	16761200	chr20:16761200:A:G	rs78172674	A	G	A	Sox1.mouse_HMG_2	13	1	-	3.342670355762519	0.21631789979146465	TTGAATGCCATTGTA
chr20	17091713	17091714	chr20:17091714:C:T	rs7509169	C	T	C	Sox1.mouse_HMG_2	8	1	+	7.812199108741821	2.1677724183598346	ATAAATACCATTTAT
chr20	17173150	17173151	chr20:17173151:G:T	rs852101	G	T	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr20	17388720	17388721	chr20:17388721:G:A	rs115390527	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr20	17443863	17443864	chr20:17443864:C:T	rs6034829	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	17519504	17519505	chr20:17519505:C:T	rs138926048	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr20	17722404	17722405	chr20:17722405:C:T	rs2296901	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr20	17722405	17722406	chr20:17722406:A:G	rs2296902	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr20	17732704	17732705	chr20:17732705:C:T	rs116914463	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr20	17732713	17732714	chr20:17732714:C:T	rs6044978	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr20	17807562	17807563	chr20:17807563:G:C	chr20:17807563:G:C	G	C	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr20	17826541	17826542	chr20:17826542:C:T	rs73254212	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr20	17874014	17874015	chr20:17874015:A:G	rs108925	A	G	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr20	18009144	18009145	chr20:18009145:C:T	rs6045137	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr20	18238397	18238398	chr20:18238398:G:C	rs7269449	G	C	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr20	18902197	18902198	chr20:18902198:C:A	rs979864	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	18902228	18902229	chr20:18902229:G:A	rs182650297	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	18983715	18983716	chr20:18983716:T:C	rs6045728	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr20	19024815	19024816	chr20:19024816:C:T	rs745552	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	19105770	19105771	chr20:19105771:G:C	rs7271713	G	C	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr20	19130611	19130612	chr20:19130612:G:A	rs6075475	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr20	19335398	19335399	chr20:19335399:T:G	rs6514992	T	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr20	19428412	19428413	chr20:19428413:G:T	rs3790200	G	T	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr20	19513144	19513145	chr20:19513145:A:T	rs6106095	A	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr20	19595633	19595634	chr20:19595634:C:G	rs6046205	C	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr20	19633879	19633880	chr20:19633880:A:C	rs6046215	A	C	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr20	19936009	19936010	chr20:19936010:G:T	rs13042178	G	T	G	Sox1.mouse_HMG_2	8	1	-	2.623690484221967	-2.225806331290132	ATGACTTGCAGGCAA
chr20	19952543	19952544	chr20:19952544:G:A	rs1876813	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr20	19959377	19959378	chr20:19959378:T:C	rs6112689	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	20210358	20210359	chr20:20210359:A:G	rs74643885	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr20	20395928	20395929	chr20:20395929:G:T	rs117761093	G	T	G	Sox1.mouse_HMG_2	8	1	-	3.470082326781469	-1.3794144887306283	GGCAATGCCATTCAC
chr20	20452954	20452955	chr20:20452955:T:C	rs6046866	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr20	20760757	20760758	chr20:20760758:T:G	rs4814986	T	G	T	Sox1.mouse_HMG_2	6	1	+	7.984664678174781	7.385492691047535	TTGAATTTCATGCAT
chr20	20825232	20825233	chr20:20825233:C:A	rs1431074735	C	A	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr20	20863253	20863254	chr20:20863254:G:C	rs6075731	G	C	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr20	20863257	20863258	chr20:20863258:A:G	rs6082209	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	20969495	20969496	chr20:20969496:C:T	rs17735762	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr20	21074712	21074713	chr20:21074713:C:T	rs12624732	C	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	21075422	21075423	chr20:21075423:C:T	rs6132393	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr20	21104670	21104671	chr20:21104671:G:C	rs117191758	G	C	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr20	21162171	21162172	chr20:21162172:T:C	rs2236178	T	C	C	Sox1.mouse_HMG_2	9	1	-	3.2577809246332414	-3.650973854681979	GTGACTGGCATTTTC
chr20	22562350	22562351	chr20:22562351:C:T	rs35140532	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr20	22563007	22563008	chr20:22563008:T:C	rs1203883	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr20	23039086	23039087	chr20:23039087:T:C	rs2235953	T	C	T	Sox1.mouse_HMG_2	3	1	-	9.057625427305878	2.148870647990657	ATGACTTCAATTCAT
chr20	23049377	23049378	chr20:23049378:C:T	rs1800576	C	T	c	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr20	23135717	23135718	chr20:23135718:T:G	rs55903421	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr20	23275205	23275206	chr20:23275206:T:G	rs1891684	T	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr20	23372047	23372048	chr20:23372048:C:A	rs7988	C	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	23422097	23422098	chr20:23422098:A:G	rs761725	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr20	23423301	23423302	chr20:23423302:A:G	rs2424553	A	G	G	Sox1.mouse_HMG_2	10	1	-	5.0683319992776985	-1.7796095790025834	ATGACTTCTATTCTT
chr20	23461447	23461448	chr20:23461448:G:A	rs12625999	G	A	g	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr20	23475900	23475901	chr20:23475901:A:G	rs1028523	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.585396334687715	0.9414040271944816	ATGACTGCCACTCAC
chr20	23598302	23598303	chr20:23598303:T:A	rs6036463	T	A	T	Sox1.mouse_HMG_2	9	1	-	6.666955313492094	-0.2417994658231265	TTGAACTTCATTCAA
chr20	23697399	23697400	chr20:23697400:C:A	rs34438831	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr20	23736668	23736669	chr20:23736669:G:A	rs6083242	G	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr20	23795181	23795182	chr20:23795182:T:C	rs6049129	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr20	23831907	23831908	chr20:23831908:C:G	rs3901412	C	G	G	Sox1.mouse_HMG_2	14	1	-	9.068365849323332	9.346821623388335	ATGAATACCGTTCAG
chr20	23952109	23952110	chr20:23952110:T:C	rs80146152	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.533392141378486	3.093214719509846	CTAAATATCAGTCTC
chr20	24050085	24050086	chr20:24050086:C:T	rs73092922	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr20	24066516	24066517	chr20:24066517:G:C	rs6114452	G	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr20	24149988	24149989	chr20:24149989:A:C	rs6049435	A	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	24331836	24331837	chr20:24331837:C:T	rs7346006	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr20	24406510	24406511	chr20:24406511:C:T	rs34808015	C	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr20	24436790	24436791	chr20:24436791:A:C	rs6049686	A	C	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr20	24478236	24478237	chr20:24478237:C:T	rs6049718	C	T	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr20	24608823	24608824	chr20:24608824:A:C	chr20:24608824:A:C	A	C	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr20	24751854	24751855	chr20:24751855:A:G	rs6049950	A	G	G	Sox1.mouse_HMG_2	11	1	-	7.622041799718022	0.7132870204028011	TTGAATACCAGTCGC
chr20	24762026	24762027	chr20:24762027:G:A	rs2424676	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr20	24762032	24762033	chr20:24762033:A:G	rs7265148	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr20	24896386	24896387	chr20:24896387:C:T	rs6036963	C	T	C	Sox1.mouse_HMG_2	11	1	+	2.64559835703369	9.55435313634891	GTCAATAGCATCCAC
chr20	24911520	24911521	chr20:24911521:A:G	rs6050120	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr20	24937902	24937903	chr20:24937903:A:G	rs6083686	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr20	25012416	25012417	chr20:25012417:G:A	rs45501494	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr20	25025685	25025686	chr20:25025686:G:A	rs116397380	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	25037886	25037887	chr20:25037887:G:A	rs1249795155	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr20	25126730	25126731	chr20:25126731:T:C	rs8122274	T	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr20	25160762	25160763	chr20:25160763:G:C	rs6107007	G	C	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr20	25178956	25178957	chr20:25178957:G:A	rs13036626	G	A	A	Sox1.mouse_HMG_2	7	1	+	2.7074679843833085	3.4085228039243836	GGGAATAGCACTCAA
chr20	25211669	25211670	chr20:25211670:C:T	rs67459375	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr20	25254492	25254493	chr20:25254493:G:A	rs3787081	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr20	25369586	25369587	chr20:25369587:A:G	rs4815411	A	G	a	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr20	25444859	25444860	chr20:25444860:T:C	rs1029496521	T	C	T	Sox1.mouse_HMG_2	13	1	-	3.3378177773682887	-1.6082999104043596	TTGAAAAGTATTCAT
chr20	25542169	25542170	chr20:25542170:T:G	rs8115484	T	G	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	25866449	25866450	chr20:25866450:C:G	rs6115351	C	G	.	Sox1.mouse_HMG_2	0	1	-	2.0047940408659164	2.34015406778276	GTGACACACATTCAC
chr20	25907299	25907300	chr20:25907300:T:A	rs6138716	T	A	.	Sox1.mouse_HMG_2	9	1	-	5.646013551241339	-1.2627412280738803	TGGACTGTCATTCAA
chr20	25984502	25984503	chr20:25984503:A:G	rs6107121	A	G	.	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	28557699	28557700	chr20:28557700:A:T	rs1399571794	A	T	.	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	28557707	28557708	chr20:28557708:C:T	rs1171706564	C	T	.	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr20	28558047	28558048	chr20:28558048:C:T	rs1360344829	C	T	.	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	28563456	28563457	chr20:28563457:C:T	chr20:28563457:C:T	C	T	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr20	28889849	28889850	chr20:28889850:A:C	chr20:28889850:A:C	A	C	.	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr20	28889877	28889878	chr20:28889878:C:G	chr20:28889878:C:G	C	G	.	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr20	29298552	29298553	chr20:29298553:G:A	rs1178288185	G	A	.	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr20	29298571	29298572	chr20:29298572:A:G	rs1285674799	A	G	.	Sox1.mouse_HMG_2	5	1	-	4.348803007699491	-2.559951771615731	TTGAATACCATTGGT
chr20	29548013	29548014	chr20:29548014:G:A	rs35427152	G	A	.	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr20	29689170	29689171	chr20:29689171:C:T	rs1387681861	C	T	.	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr20	30031393	30031394	chr20:30031394:A:T	rs1407093044	A	T	.	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr20	30281112	30281113	chr20:30281113:A:G	rs66625798	A	G	.	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	30537458	30537459	chr20:30537459:A:G	rs1321228234	A	G	.	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr20	31054462	31054463	chr20:31054463:G:T	rs1228620630	G	T	.	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr20	31054471	31054472	chr20:31054472:T:C	rs1318219596	T	C	.	Sox1.mouse_HMG_2	14	1	-	3.933536214040907	4.098177461935855	TTGCATTCCATTCTA
chr20	31054502	31054503	chr20:31054503:G:A	rs1208700181	G	A	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr20	31055109	31055110	chr20:31055110:A:C	rs1390735808	A	C	.	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr20	31058821	31058822	chr20:31058822:A:C	rs1273849235	A	C	.	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr20	31059249	31059250	chr20:31059250:G:A	rs1182045015	G	A	.	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr20	31059260	31059261	chr20:31059261:G:T	rs1200297544	G	T	.	Sox1.mouse_HMG_2	7	1	-	3.641030967221322	4.037715687889392	TTCAATTCCATTCCT
chr20	31061734	31061735	chr20:31061735:A:C	rs1193652819	A	C	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr20	31062691	31062692	chr20:31062692:G:A	rs1416128291	G	A	.	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr20	31062728	31062729	chr20:31062729:G:T	rs1324040141	G	T	.	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	31065691	31065692	chr20:31065692:A:T	chr20:31065692:A:T	A	T	.	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr20	31072399	31072400	chr20:31072400:G:A	chr20:31072400:G:A	G	A	.	Sox1.mouse_HMG_2	12	1	-	3.933536214040907	-0.7390508896273472	TTGCATTCCATTCTA
chr20	31072419	31072420	chr20:31072420:T:G	rs1483208298	T	G	.	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr20	31072421	31072422	chr20:31072422:T:C	rs914780463	T	C	.	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr20	31072513	31072514	chr20:31072514:G:T	rs1439122197	G	T	.	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr20	31072527	31072528	chr20:31072528:T:C	rs923527773	T	C	.	Sox1.mouse_HMG_2	9	1	-	9.96174697635067	3.0529921970354477	TTCAATTCCATTCAT
chr20	31072710	31072711	chr20:31072711:T:A	rs1054932921	T	A	.	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	31072714	31072715	chr20:31072715:G:T	rs1234775023	G	T	.	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr20	31072733	31072734	chr20:31072734:G:T	rs1174438352	G	T	.	Sox1.mouse_HMG_2	3	1	-	3.933536214040907	10.84229099335613	TTGCATTCCATTCTA
chr20	31073812	31073813	chr20:31073813:A:C	rs1045747975	A	C	.	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr20	31073824	31073825	chr20:31073825:G:A	rs1313917420	G	A	.	Sox1.mouse_HMG_2	7	1	-	8.644037611667985	8.183093157960878	TTCAATTCCATTCAA
chr20	31073829	31073830	chr20:31073830:G:C	rs1448166452	G	C	.	Sox1.mouse_HMG_2	2	1	-	8.644037611667985	14.036654546514422	TTCAATTCCATTCAA
chr20	31074274	31074275	chr20:31074275:G:C	rs905894745	G	C	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr20	31074285	31074286	chr20:31074286:A:G	rs1054959164	A	G	.	Sox1.mouse_HMG_2	6	1	-	3.641030967221322	0.12962139927435035	TTCAATTCCATTCCT
chr20	31074299	31074300	chr20:31074300:G:C	rs1352980341	G	C	.	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr20	31074303	31074304	chr20:31074304:A:G	rs1328516061	A	G	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr20	31157347	31157348	chr20:31157348:A:G	rs1384609956	A	G	.	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr20	31163638	31163639	chr20:31163639:G:A	rs879151527	G	A	.	Sox1.mouse_HMG_2	12	1	-	3.641030967221322	-1.0315561364469334	TTCAATTCCATTCCT
chr20	31169636	31169637	chr20:31169637:G:T	rs974085069	G	T	.	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr20	31185278	31185279	chr20:31185279:T:G	rs1360785556	T	G	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr20	31377210	31377211	chr20:31377211:T:C	rs709045	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr20	31572451	31572452	chr20:31572452:C:T	rs115673593	C	T	C	Sox1.mouse_HMG_2	10	1	-	4.460456781371994	0.3651127188168096	GTGAATACGAGTCTT
chr20	31797388	31797389	chr20:31797389:C:T	rs6058463	C	T	C	Sox1.mouse_HMG_2	8	1	+	2.058028095444194	-3.5863985949377915	CTGACTGACTTTCTC
chr20	31836164	31836165	chr20:31836165:A:G	rs6060985	A	G	G	Sox1.mouse_HMG_2	7	1	+	3.0234920041495883	2.3224371846085123	CTGACTCACAGTCTG
chr20	31854194	31854195	chr20:31854195:A:T	rs6089100	A	T	A	Sox1.mouse_HMG_2	4	1	+	7.819162268848925	0.9977494996888522	ATGAATTGCACTCAA
chr20	31880435	31880436	chr20:31880436:A:G	rs532924493	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr20	31880482	31880483	chr20:31880483:G:C	rs6058480	G	C	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr20	31925931	31925932	chr20:31925932:C:T	rs4911195	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr20	32003235	32003236	chr20:32003236:C:T	rs78428620	C	T	C	Sox1.mouse_HMG_2	7	1	+	1.9434693471146904	1.4825248934075836	CTGACCCCCATTCAC
chr20	32334765	32334766	chr20:32334766:G:T	rs1424738085	G	T	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr20	32368875	32368876	chr20:32368876:A:G	chr20:32368876:A:G	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr20	32373537	32373538	chr20:32373538:G:A	rs4911223	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr20	32437427	32437428	chr20:32437428:T:C	rs2295763	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr20	32510761	32510762	chr20:32510762:G:T	rs293567	G	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr20	32526675	32526676	chr20:32526676:G:A	rs879829	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	32603257	32603258	chr20:32603258:A:G	rs544377714	A	G	A	Sox1.mouse_HMG_2	9	1	-	2.2605153619033693	2.2605153619033693	CTGACTTCCTTTCTC
chr20	32619869	32619870	chr20:32619870:A:G	rs555760650	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr20	32619905	32619906	chr20:32619906:T:C	rs458918	T	C	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr20	32693662	32693663	chr20:32693663:A:G	rs192191175	A	G	-	Sox1.mouse_HMG_2	7	1	+	6.159042441775684	5.45798762223461	TTAAATGACATTCTG
chr20	32972405	32972406	chr20:32972406:C:T	rs73904097	C	T	T	Sox1.mouse_HMG_2	2	1	-	2.259184377376615	-2.3862181556396025	CTGACTTCCAGCCAA
chr20	33178875	33178876	chr20:33178876:C:G	rs73904620	C	G	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr20	33236682	33236683	chr20:33236683:G:A	rs62209723	G	A	A	Sox1.mouse_HMG_2	1	1	+	2.610020722291772	2.9144919013703467	CGGAATTCCATCCAG
chr20	33262694	33262695	chr20:33262695:C:A	rs12480728	C	A	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	33665114	33665115	chr20:33665115:T:C	rs74941462	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.4322687328331933	-3.3891440363268788	CTGAATCACAGTCCT
chr20	34293216	34293217	chr20:34293217:A:C	rs819156	A	C	C	Sox1.mouse_HMG_2	11	1	-	4.119300750462198	-2.7894540288530223	TGGAATTTCATTTAG
chr20	34293245	34293246	chr20:34293246:G:A	rs819155	G	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr20	34791797	34791798	chr20:34791798:A:T	rs79202837	A	T	A	Sox1.mouse_HMG_2	14	1	-	3.271255537534135	1.953546172851449	GAGAATTTCCTTCAT
chr20	34922858	34922859	chr20:34922859:A:G	rs6087649	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr20	35016238	35016239	chr20:35016239:T:C	rs3736802	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	35049802	35049803	chr20:35049803:T:G	rs2281626	T	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr20	35251463	35251464	chr20:35251464:C:T	rs60486449	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr20	35344330	35344331	chr20:35344331:G:A	rs564977405	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr20	35540103	35540104	chr20:35540104:C:T	rs75824338	C	T	T	Sox1.mouse_HMG_2	8	1	-	3.5680799040875724	4.437117751111182	TTGAAGACGATTCAT
chr20	35540121	35540122	chr20:35540122:G:A	rs2104417	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr20	35790135	35790136	chr20:35790136:C:T	rs111433174	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.198301545056723	-0.47428555861153165	TAGAATTACATGCAT
chr20	36271120	36271121	chr20:36271121:G:A	rs2425207	G	A	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr20	36418817	36418818	chr20:36418818:T:G	rs4494819	T	G	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	36606376	36606377	chr20:36606377:C:T	rs118081466	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr20	36873727	36873728	chr20:36873728:G:A	rs1291116	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr20	36884244	36884245	chr20:36884245:A:G	rs1291133	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.943077187181891	-1.9656775921333298	AGAAATGCCATTCAG
chr20	37207485	37207486	chr20:37207486:A:G	rs1079657	A	G	G	Sox1.mouse_HMG_2	6	1	+	2.858239307711409	1.4180618858427692	CTGATTATCATTCCT
chr20	37232026	37232027	chr20:37232027:G:A	rs909870	G	A	A	Sox1.mouse_HMG_2	12	1	-	6.093388998338196	1.4208018946699417	CTCACTGCCATTCAG
chr20	37237430	37237431	chr20:37237431:C:G	rs113933117	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr20	37380527	37380528	chr20:37380528:T:G	rs138592056	T	G	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr20	37380538	37380539	chr20:37380539:G:A	rs78193490	G	A	G	Sox1.mouse_HMG_2	13	1	-	3.881181427067525	7.00753388303858	CTAAATATCATTCCG
chr20	37453392	37453393	chr20:37453393:A:G	rs6018626	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.9519279714296527	-0.9941897163429955	CTGATTCTCATTCAC
chr20	37540311	37540312	chr20:37540312:G:A	rs56271853	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr20	37851224	37851225	chr20:37851225:C:T	rs4811211	C	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr20	37922083	37922084	chr20:37922084:G:C	rs62201729	G	C	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr20	38118426	38118427	chr20:38118427:A:G	rs2092358	A	G	g	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr20	38141436	38141437	chr20:38141437:G:A	rs12624511	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr20	38252224	38252225	chr20:38252225:C:T	rs77082727	C	T	c	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr20	38315625	38315626	chr20:38315626:A:G	rs554807689	A	G	a	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr20	38536436	38536437	chr20:38536437:A:T	rs6100113	A	T	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr20	38608503	38608504	chr20:38608504:T:C	rs6070754	T	C	T	Sox1.mouse_HMG_2	13	1	-	1.8874195849578248	-3.0586981028148235	CTGTAAAACATTCAG
chr20	38701049	38701050	chr20:38701050:G:A	rs1358899	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	38811097	38811098	chr20:38811098:A:T	rs79947117	A	T	A	Sox1.mouse_HMG_2	11	1	-	6.229474919144866	-0.6792798601703539	AGGAATGCCATTCTA
chr20	39007335	39007336	chr20:39007336:A:G	rs8114962	A	G	G	Sox1.mouse_HMG_2	3	1	+	5.600369558052472	-1.3083852212627485	GTGACTGACAGTCTG
chr20	39246401	39246402	chr20:39246402:T:C	rs1012338	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr20	39452446	39452447	chr20:39452447:T:C	rs2206434	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr20	39849990	39849991	chr20:39849991:C:T	rs143652643	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr20	39850013	39850014	chr20:39850014:C:T	rs148097573	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr20	40045054	40045055	chr20:40045055:T:A	rs112468688	T	A	T	Sox1.mouse_HMG_2	4	1	-	2.9331774504742185	-3.8882353186858527	GGGAACATCATTCAC
chr20	40266145	40266146	chr20:40266146:A:G	rs6071994	A	G	G	Sox1.mouse_HMG_2	12	1	+	4.376178706406384	4.376178706406384	ATCAATATCATTAAT
chr20	40532263	40532264	chr20:40532264:G:C	chr20:40532264:G:C	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr20	40532281	40532282	chr20:40532282:G:A	rs113466641	G	A	G	Sox1.mouse_HMG_2	14	1	-	2.465041155017155	3.339653497739891	TTGAACACCAGTCTC
chr20	40532282	40532283	chr20:40532283:A:G	rs117111358	A	G	A	Sox1.mouse_HMG_2	13	1	-	2.465041155017155	-0.6613113009538995	TTGAACACCAGTCTC
chr20	40603656	40603657	chr20:40603657:A:G	rs6029202	A	G	A	Sox1.mouse_HMG_2	5	1	-	10.515370343766199	3.6066155644509785	CAGAATTTCATTCAT
chr20	40646829	40646830	chr20:40646830:G:A	rs6016399	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr20	40743997	40743998	chr20:40743998:G:A	rs73300124	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr20	41221667	41221668	chr20:41221668:C:G	rs6072310	C	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr20	41308392	41308393	chr20:41308393:A:G	rs141517418	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr20	41876737	41876738	chr20:41876738:C:T	rs6072521	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr20	41891333	41891334	chr20:41891334:T:G	rs6093531	T	G	T	Sox1.mouse_HMG_2	1	1	+	5.63961268860674	0.6911492020349302	TTGAATATCATTGTT
chr20	42285265	42285266	chr20:42285266:T:C	rs79606907	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr20	42742849	42742850	chr20:42742850:G:A	rs6093728	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr20	42814748	42814749	chr20:42814749:A:G	rs208219	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr20	43108934	43108935	chr20:43108935:C:T	rs2425605	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr20	43188060	43188061	chr20:43188061:G:A	rs143435342	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr20	43188072	43188073	chr20:43188073:T:C	rs2235206	T	C	T	Sox1.mouse_HMG_2	6	1	-	2.5109404928005628	1.0707630709319247	ATTAATACCACTCAC
chr20	43188078	43188079	chr20:43188079:T:C	rs117819143	T	C	T	Sox1.mouse_HMG_2	0	1	-	2.5109404928005628	1.5067042601653613	ATTAATACCACTCAC
chr20	43404962	43404963	chr20:43404963:C:T	rs57855348	C	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr20	43404968	43404969	chr20:43404969:A:C	chr20:43404969:A:C	A	C	A	Sox1.mouse_HMG_2	3	1	+	5.192823054916959	-1.7159317243982604	AAGACTTCCAGTCAA
chr20	43590296	43590297	chr20:43590297:C:G	rs112932648	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr20	43869614	43869615	chr20:43869615:T:A	rs12481250	T	A	T	Sox1.mouse_HMG_2	3	1	-	4.606109848354221	-2.3026449309609993	TTGACCTGCATTCAG
chr20	43895206	43895207	chr20:43895207:C:T	rs79193026	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.855706927934418	-0.7887197624475689	CTGGCTGCCATTCAC
chr20	43895228	43895229	chr20:43895229:A:G	rs6103499	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr20	43987363	43987364	chr20:43987364:G:C	rs73120103	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr20	43999956	43999957	chr20:43999957:G:A	rs6073277	G	A	A	Sox1.mouse_HMG_2	14	1	+	2.671512681841693	2.5068714339467455	GTCAAGACCATTCAG
chr20	44212968	44212969	chr20:44212969:C:T	rs8115598	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	44406019	44406020	chr20:44406020:T:C	rs736824	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr20	44542358	44542359	chr20:44542359:G:A	rs11696619	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr20	44638212	44638213	chr20:44638213:A:G	rs3787359	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr20	44678311	44678312	chr20:44678312:A:T	rs78652829	A	T	a	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	45174584	45174585	chr20:45174585:G:A	rs62208416	G	A	G	Sox1.mouse_HMG_2	14	1	+	3.850056676500399	3.6854154286054515	CTGAATAACCTTCGG
chr20	45177193	45177194	chr20:45177194:T:C	rs13043503	T	C	T	Sox1.mouse_HMG_2	13	1	+	11.752606518037059	8.626254062066005	GTGAATAGCATTCTC
chr20	45179411	45179412	chr20:45179412:T:G	chr20:45179412:T:G	T	G	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr20	45336536	45336537	chr20:45336537:C:A	rs6124699	C	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr20	45355031	45355032	chr20:45355032:A:G	rs73907919	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.427370178456839	-1.4205713998234417	CCAAATGGCATTCAT
chr20	45857532	45857533	chr20:45857533:G:A	rs541836451	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr20	45993858	45993859	chr20:45993859:C:T	rs78295912	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.0030185657112494	-1.6423839673049687	GTGAATAGGAGTCTG
chr20	45993873	45993874	chr20:45993874:G:C	rs73911144	G	C	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr20	46312068	46312069	chr20:46312069:G:T	rs77730839	G	T	G	Sox1.mouse_HMG_2	0	1	-	1.6650135730496878	2.3338897787680457	CTGACACCCATTCAG
chr20	46558601	46558602	chr20:46558602:A:G	rs8149	A	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr20	46640883	46640884	chr20:46640884:C:T	rs6017948	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr20	46640916	46640917	chr20:46640917:C:T	rs6017949	C	T	C	Sox1.mouse_HMG_2	0	1	-	3.2498398439913134	4.254076076626516	GTGACTTCCAGTGAT
chr20	46689993	46689994	chr20:46689994:T:A	rs147351756	T	A	T	Sox1.mouse_HMG_2	5	1	+	4.2770699240871615	-2.6316848552280585	ATAACTACCATTTAG
chr20	46702653	46702654	chr20:46702654:A:T	rs6012016	A	T	T	Sox1.mouse_HMG_2	3	1	+	1.8552409711351068	-5.053513808180113	ATGAACAGCCTTCAG
chr20	46839365	46839366	chr20:46839366:T:G	rs62213341	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr20	46953703	46953704	chr20:46953704:A:G	rs11696503	A	G	a	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr20	46971640	46971641	chr20:46971641:G:A	rs13041757	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr20	46971669	46971670	chr20:46971670:C:T	rs13041611	C	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr20	47020542	47020543	chr20:47020543:T:C	rs6094559	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr20	47111859	47111860	chr20:47111860:A:G	rs6018285	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr20	47118484	47118485	chr20:47118485:C:G	rs6122555	C	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr20	47164098	47164099	chr20:47164099:C:T	rs77819085	C	T	C	Sox1.mouse_HMG_2	13	1	+	3.687004890190508	6.813357346161562	CTGACTTACAGTCCC
chr20	47185055	47185056	chr20:47185056:A:C	rs8115769	A	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr20	47518821	47518822	chr20:47518822:T:C	rs1206882	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.3401540677827604	-4.50778751049752	CTGACTCACATGCAC
chr20	47716002	47716003	chr20:47716003:T:G	rs6063140	T	G	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	47819787	47819788	chr20:47819788:A:G	rs6122619	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.0487678611677107	-3.79917371711257	GTGAATTAAATACAC
chr20	47905877	47905878	chr20:47905878:C:T	rs6063173	C	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	47911145	47911146	chr20:47911146:T:C	rs3091938	T	C	C	Sox1.mouse_HMG_2	4	1	-	2.4380668440731155	-4.383345925086955	ATGCATACCTTTCAC
chr20	47922158	47922159	chr20:47922159:T:A	rs992584	T	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr20	47965190	47965191	chr20:47965191:C:T	rs6094928	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr20	48019637	48019638	chr20:48019638:G:T	rs62202693	G	T	G	Sox1.mouse_HMG_2	12	1	-	12.487268245559473	5.58681959509311	GTGAATTACATTCTT
chr20	48127489	48127490	chr20:48127490:A:G	rs2425991	A	G	G	Sox1.mouse_HMG_2	9	1	+	4.153491802790251	-2.755262976524968	CTAATTTCCATTCAT
chr20	48175641	48175642	chr20:48175642:C:T	rs689438	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr20	48346678	48346679	chr20:48346679:C:G	rs672108	C	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr20	48453941	48453942	chr20:48453942:T:C	rs73609624	T	C	T	Sox1.mouse_HMG_2	3	1	-	9.91778505281634	3.009030273501118	ATGACTCACATTCAC
chr20	48612618	48612619	chr20:48612619:T:G	rs4810837	T	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr20	48748244	48748245	chr20:48748245:T:G	rs6095279	T	G	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr20	48764452	48764453	chr20:48764453:T:C	rs6019409	T	C	t	Sox1.mouse_HMG_2	10	1	+	3.3796849444527455	-3.4682566338275347	ATCAATAGCATTGAG
chr20	48795041	48795042	chr20:48795042:G:A	rs34000667	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	48805555	48805556	chr20:48805556:T:C	rs6019431	T	C	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	48823682	48823683	chr20:48823683:C:G	rs4809728	C	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	48850969	48850970	chr20:48850970:A:G	rs6095327	A	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr20	48914616	48914617	chr20:48914617:G:C	rs6012557	G	C	G	Sox1.mouse_HMG_2	10	1	+	4.641245445243535	0.5459013826883518	CTGCATTCCAGTCAA
chr20	49010632	49010633	chr20:49010633:G:T	rs6095396	G	T	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr20	49052470	49052471	chr20:49052471:C:A	rs186651862	C	A	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr20	49279818	49279819	chr20:49279819:C:T	rs535748210	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr20	49310869	49310870	chr20:49310870:C:T	rs117906400	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr20	49471460	49471461	chr20:49471461:A:C	rs552068	A	C	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	49505440	49505441	chr20:49505441:A:G	rs5602	A	G	g	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr20	49560556	49560557	chr20:49560557:A:G	rs74468948	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr20	49583418	49583419	chr20:49583419:G:A	rs477359	G	A	A	Sox1.mouse_HMG_2	8	1	-	6.5528004584015225	0.9083737680195364	GCGAATTTCAGTCAC
chr20	49587383	49587384	chr20:49587384:C:T	rs6095584	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr20	49670555	49670556	chr20:49670556:C:T	rs6095605	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr20	49693269	49693270	chr20:49693270:C:T	rs4809751	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.633821857504577	4.508434200227313	CAGAATATCAATCAC
chr20	49771179	49771180	chr20:49771180:T:C	rs679376	T	C	T	Sox1.mouse_HMG_2	9	1	-	6.056089428843519	-0.8526653504717009	TTGAATAACAGGCAC
chr20	49797280	49797281	chr20:49797281:C:T	rs2869931	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr20	49805557	49805558	chr20:49805558:A:G	rs6020055	A	G	A	Sox1.mouse_HMG_2	2	1	+	4.905713974314216	9.551116507330432	GTAACTGCCAGTCAT
chr20	49857008	49857009	chr20:49857009:T:A	rs537672	T	A	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr20	50061513	50061514	chr20:50061514:A:C	rs6125883	A	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	50110645	50110646	chr20:50110646:A:T	rs141409464	A	T	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	50162469	50162470	chr20:50162470:T:C	rs6020306	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr20	50304545	50304546	chr20:50304546:G:T	rs570766525	G	T	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr20	50320282	50320283	chr20:50320283:A:T	rs9974000	A	T	A	Sox1.mouse_HMG_2	4	1	+	5.826576441219335	-0.994836327940737	GTGAATCCCAGTCTT
chr20	50355147	50355148	chr20:50355148:G:T	rs4809781	G	T	N	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	50366610	50366611	chr20:50366611:T:C	rs754482246	T	C	t	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr20	50450259	50450260	chr20:50450260:T:C	rs6063519	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr20	50492455	50492456	chr20:50492456:A:G	rs111953176	A	G	A	Sox1.mouse_HMG_2	4	1	+	7.430011337629879	0.6085985684698069	CTCAATTACATTCTT
chr20	50511702	50511703	chr20:50511703:G:A	rs6020572	G	A	A	Sox1.mouse_HMG_2	8	1	+	4.230707818525076	5.099745665548686	CTGAATAAGATACAT
chr20	50972134	50972135	chr20:50972135:T:C	rs6020871	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr20	50987756	50987757	chr20:50987757:A:G	rs73117665	A	G	A	Sox1.mouse_HMG_2	11	1	-	2.9591928554877915	-3.949561923827429	GAGAAAATCATTCAG
chr20	51122110	51122111	chr20:51122111:A:G	rs230011	A	G	A	Sox1.mouse_HMG_2	13	1	-	2.4484485270975505	-0.677903928873504	ATGACAGACATTCTG
chr20	51122130	51122131	chr20:51122131:T:C	rs6096269	T	C	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	51142728	51142729	chr20:51142729:G:A	rs73909650	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr20	51227364	51227365	chr20:51227365:A:G	rs2426291	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr20	51395322	51395323	chr20:51395323:T:C	rs4811171	T	C	-	Sox1.mouse_HMG_2	9	1	-	3.511107666581947	-3.3976471127332726	ATCAATACCATACAA
chr20	51482247	51482248	chr20:51482248:A:G	rs6123039	A	G	A	Sox1.mouse_HMG_2	9	1	-	5.880266585179757	5.880266585179757	CTGAATAACTTTCTC
chr20	51484460	51484461	chr20:51484461:G:A	rs6067794	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr20	51485810	51485811	chr20:51485811:A:G	rs747064	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr20	51525337	51525338	chr20:51525338:G:A	rs73277959	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr20	51554829	51554830	chr20:51554830:C:T	rs147317695	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr20	51554830	51554831	chr20:51554831:A:G	rs4811193	A	G	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	51554861	51554862	chr20:51554862:G:A	rs76423759	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	51614978	51614979	chr20:51614979:A:G	rs6063678	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr20	51631209	51631210	chr20:51631210:C:T	rs6021332	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr20	51710890	51710891	chr20:51710891:G:A	rs6126314	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr20	51739661	51739662	chr20:51739662:G:A	rs78663430	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr20	51739697	51739698	chr20:51739698:G:A	rs6067915	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr20	51761020	51761021	chr20:51761021:G:A	rs542083202	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	52061505	52061506	chr20:52061506:G:A	rs11700140	G	A	G	Sox1.mouse_HMG_2	4	1	+	2.4839852049665474	9.305397974126622	GCGAGTTTCATTCAC
chr20	52577829	52577830	chr20:52577830:A:G	rs112242904	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	52676384	52676385	chr20:52676385:C:T	rs6022039	C	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr20	52731239	52731240	chr20:52731240:C:T	rs77406590	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr20	52798795	52798796	chr20:52798796:A:G	rs6022097	A	G	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr20	52837618	52837619	chr20:52837619:G:C	rs4254558	G	C	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr20	52871482	52871483	chr20:52871483:G:A	rs73148082	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr20	52948667	52948668	chr20:52948668:T:C	rs16997309	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.1816242604437495	-2.7271305188714714	ATAAATCACATTCTG
chr20	53028596	53028597	chr20:53028597:A:G	rs6097197	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr20	53104685	53104686	chr20:53104686:G:A	rs2800996	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr20	53149728	53149729	chr20:53149729:A:G	rs76552090	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr20	53163787	53163788	chr20:53163788:A:G	rs973667	A	G	G	Sox1.mouse_HMG_2	4	1	+	5.9124352524291925	-0.908977516730879	CTGAATCAGATTCAC
chr20	53231206	53231207	chr20:53231207:G:C	rs6022347	G	C	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr20	53409678	53409679	chr20:53409679:C:T	rs192224533	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr20	53445486	53445487	chr20:53445487:G:A	rs145825604	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr20	53570925	53570926	chr20:53570926:T:C	rs8118414	T	C	T	Sox1.mouse_HMG_2	10	1	+	1.464820539481752	-5.38312103879853	CTGAAAAGCATGCAC
chr20	53590047	53590048	chr20:53590048:C:A	rs1819286	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr20	53659912	53659913	chr20:53659913:T:C	rs6068608	T	C	T	Sox1.mouse_HMG_2	12	1	+	6.052989705509933	10.72557680917819	GAGAATAACATTTAG
chr20	53748220	53748221	chr20:53748221:T:G	rs8117366	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr20	53748927	53748928	chr20:53748928:G:A	rs4811457	G	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr20	53787818	53787819	chr20:53787819:C:G	rs112647762	C	G	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr20	53940453	53940454	chr20:53940454:G:T	rs147088199	G	T	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr20	53943586	53943587	chr20:53943587:A:G	rs1055253	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr20	53989609	53989610	chr20:53989610:A:G	rs208360	A	G	G	Sox1.mouse_HMG_2	4	1	+	7.645711405932431	0.8242986367723601	TAGAATACCAGTCAG
chr20	54054592	54054593	chr20:54054593:T:G	rs6022934	T	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	54096703	54096704	chr20:54096704:A:G	rs77823893	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr20	54096718	54096719	chr20:54096719:G:A	rs76759600	G	A	a	Sox1.mouse_HMG_2	12	1	-	4.400224060650839	-0.27236304301741715	ATAACTAACATTCGG
chr20	54130966	54130967	chr20:54130967:C:T	rs2585450	C	T	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr20	54133519	54133520	chr20:54133520:G:A	rs6097779	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr20	54141132	54141133	chr20:54141133:T:C	rs73281627	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr20	54171473	54171474	chr20:54171474:A:G	rs6022999	A	G	A	Sox1.mouse_HMG_2	4	1	+	7.4775811454420085	0.6561683762819354	CCGAATTGCATTCTT
chr20	54257569	54257570	chr20:54257570:T:A	rs6023079	T	A	T	Sox1.mouse_HMG_2	10	1	+	4.812026025832157	-2.0359155524481243	AGGAACATCATTCAT
chr20	54345358	54345359	chr20:54345359:G:A	rs113475450	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr20	54350633	54350634	chr20:54350634:G:A	rs1150419	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr20	54514050	54514051	chr20:54514051:G:T	rs2426521	G	T	G	Sox1.mouse_HMG_2	8	1	-	3.79380736306285	-1.055689452449249	TTGAATTGCATCCTG
chr20	54898728	54898729	chr20:54898729:G:A	rs1588602	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr20	55174362	55174363	chr20:55174363:T:C	rs11696349	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr20	55614534	55614535	chr20:55614535:T:C	rs145199927	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.7985845373999565	-3.110170241915265	TGGAATGTCATTTAC
chr20	55714880	55714881	chr20:55714881:A:G	rs1018494	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr20	55782395	55782396	chr20:55782396:A:G	rs7271925	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.338252160257042	-2.570502619058179	TCGAATAGCCTTCAT
chr20	56106718	56106719	chr20:56106719:A:T	rs6069581	A	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr20	56181706	56181707	chr20:56181707:T:G	rs977846004	T	G	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr20	56348536	56348537	chr20:56348537:A:G	rs73283384	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr20	56356214	56356215	chr20:56356215:C:T	rs6014704	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr20	56356232	56356233	chr20:56356233:A:G	rs6024820	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.3126791867958505	-1.6334385009767978	ATGAAAACCGTTCAT
chr20	56412159	56412160	chr20:56412160:G:C	rs17462136	G	C	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr20	56443475	56443476	chr20:56443476:A:C	rs7266908	A	C	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr20	56759935	56759936	chr20:56759936:C:A	rs2145699	C	A	A	Sox1.mouse_HMG_2	7	1	+	5.105352186503639	5.502036907171709	TTGACTTCCATTTTT
chr20	56833484	56833485	chr20:56833485:T:C	rs747423633	T	C	t	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	56953272	56953273	chr20:56953273:G:A	rs73291993	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.131307430138322	0.4587203264700662	ATGACTGACAGTCGC
chr20	57072564	57072565	chr20:57072565:A:G	rs1041162	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr20	57091606	57091607	chr20:57091607:T:G	rs6127935	T	G	T	Sox1.mouse_HMG_2	10	1	+	3.486957895555784	0.7343603798306876	ATGCCTCCCATTCAT
chr20	57091622	57091623	chr20:57091623:T:G	rs6025366	T	G	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	57104611	57104612	chr20:57104612:G:T	rs62203917	G	T	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	57250636	57250637	chr20:57250637:A:G	rs6070035	A	G	G	Sox1.mouse_HMG_2	0	1	-	9.28661456662328	9.552557760392714	TTGAACACCATTCAT
chr20	57282854	57282855	chr20:57282855:G:A	rs8125534	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr20	57282870	57282871	chr20:57282871:T:A	rs142806231	T	A	T	Sox1.mouse_HMG_2	4	1	-	7.9336185124637355	1.1122057433036647	TTGAATGCCAGTCTC
chr20	57288303	57288304	chr20:57288304:A:G	rs187632082	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr20	57317770	57317771	chr20:57317771:T:C	rs74578376	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr20	57389104	57389105	chr20:57389105:C:T	rs79357353	C	T	C	Sox1.mouse_HMG_2	10	1	-	3.9569547230935886	-0.13838933946159482	CTGACAATCAGTCAT
chr20	57427614	57427615	chr20:57427615:A:C	rs2426723	A	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr20	57430913	57430914	chr20:57430914:A:G	rs62204192	A	G	a	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr20	57512010	57512011	chr20:57512011:G:A	rs147658742	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr20	57581529	57581530	chr20:57581530:G:C	rs62204266	G	C	g	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	57614427	57614428	chr20:57614428:C:G	rs190943086	C	G	C	Sox1.mouse_HMG_2	2	1	-	3.4036743168531958	-1.9889426179932406	GTGCATGGCATTCTC
chr20	57645089	57645090	chr20:57645090:C:A	rs117804220	C	A	C	Sox1.mouse_HMG_2	14	1	-	8.548156347511348	9.701224464299086	GTGATTAACATTCAG
chr20	57811357	57811358	chr20:57811358:A:C	rs114511131	A	C	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr20	57920513	57920514	chr20:57920514:G:A	rs6025901	G	A	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr20	57924826	57924827	chr20:57924827:T:G	chr20:57924827:T:G	T	G	T	Sox1.mouse_HMG_2	0	1	-	4.575850366709114	3.9069741609907545	ATCAATTCCATTCCT
chr20	57934561	57934562	chr20:57934562:C:T	rs150695099	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr20	58072054	58072055	chr20:58072055:T:C	rs6015180	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr20	58144688	58144689	chr20:58144689:T:A	rs1295461558	T	A	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr20	58202382	58202383	chr20:58202383:C:T	rs6128287	C	T	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr20	58213031	58213032	chr20:58213032:G:T	rs6026132	G	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr20	58222960	58222961	chr20:58222961:T:C	rs573485	T	C	C	Sox1.mouse_HMG_2	4	1	-	5.0284767181847805	-1.792936050975292	GTGAATAACAGTTTC
chr20	58224313	58224314	chr20:58224314:A:G	rs542364437	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr20	58378236	58378237	chr20:58378237:A:G	rs6070447	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.8516198258843337	-3.057134953430886	GGGAATAACAATCAC
chr20	58447926	58447927	chr20:58447927:C:T	rs1387595300	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr20	58547375	58547376	chr20:58547376:A:G	rs78320391	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr20	58787114	58787115	chr20:58787115:T:C	rs6070600	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr20	58893917	58893918	chr20:58893918:C:T	rs113959523	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr20	58992487	58992488	chr20:58992488:A:G	rs184673	A	G	G	Sox1.mouse_HMG_2	9	1	+	2.3310137385604746	-4.577741040754745	CTGAGTATCACTCAT
chr20	59182293	59182294	chr20:59182294:A:G	rs11908538	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr20	59202697	59202698	chr20:59202698:T:C	rs259998	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr20	59269549	59269550	chr20:59269550:T:C	rs6026785	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr20	59362552	59362553	chr20:59362553:C:T	rs197819	C	T	C	Sox1.mouse_HMG_2	4	1	+	5.802856824511647	1.3635051232184952	GTGACTTCCAGTCTG
chr20	59454254	59454255	chr20:59454255:A:C	rs56858342	A	C	A	Sox1.mouse_HMG_2	3	1	+	4.476305186518664	-2.4324495927965573	CCTAATTACATTCAT
chr20	59455434	59455435	chr20:59455435:A:C	rs905183927	A	C	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	59485757	59485758	chr20:59485758:T:C	rs275299	T	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr20	59613298	59613299	chr20:59613299:C:T	rs6128644	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr20	59677078	59677079	chr20:59677079:A:C	rs6027034	A	C	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr20	59724033	59724034	chr20:59724034:C:T	rs78624401	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr20	59826866	59826867	chr20:59826867:C:T	rs77366541	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr20	59831165	59831166	chr20:59831166:T:C	rs6092831	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr20	59831179	59831180	chr20:59831180:C:G	rs377231815	C	G	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr20	59972820	59972821	chr20:59972821:T:C	rs2426859	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr20	60025146	60025147	chr20:60025147:T:G	rs195022	T	G	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr20	60081894	60081895	chr20:60081895:T:C	rs17727233	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	60095730	60095731	chr20:60095731:G:T	rs73133244	G	T	G	Sox1.mouse_HMG_2	14	1	+	3.460578569705037	4.613646686492776	CTGAATGGCTTTCTG
chr20	60481807	60481808	chr20:60481808:T:C	rs348787	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr20	60481844	60481845	chr20:60481845:C:T	rs8125699	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr20	60484281	60484282	chr20:60484282:G:A	rs75009095	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	60785457	60785458	chr20:60785458:G:A	rs2426915	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr20	60956826	60956827	chr20:60956827:G:T	rs35955505	G	T	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr20	61049891	61049892	chr20:61049892:A:T	rs2865972	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr20	61105492	61105493	chr20:61105493:C:T	rs74617985	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr20	61575868	61575869	chr20:61575869:A:G	rs2253219	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr20	61590948	61590949	chr20:61590949:C:T	rs2243597	C	T	c	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr20	61654294	61654295	chr20:61654295:C:T	rs13040602	C	T	-	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr20	61669147	61669148	chr20:61669148:C:T	rs73148395	C	T	c	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr20	61729047	61729048	chr20:61729048:G:A	rs74437599	G	A	g	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr20	61857847	61857848	chr20:61857848:G:T	rs6142878	G	T	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr20	61934638	61934639	chr20:61934639:T:C	rs4925317	T	C	T	Sox1.mouse_HMG_2	9	1	-	1.953944482312686	-4.954810297002533	GGGAAGGCCATTCAC
chr20	61945255	61945256	chr20:61945256:A:G	rs202140862	A	G	g	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr20	61948721	61948722	chr20:61948722:C:G	rs6061391	C	G	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr20	62044850	62044851	chr20:62044851:C:G	rs6089624	C	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr20	62182160	62182161	chr20:62182161:G:A	rs76572959	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr20	62188340	62188341	chr20:62188341:A:G	rs6121949	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr20	62430794	62430795	chr20:62430795:C:T	rs11908663	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr20	62654716	62654717	chr20:62654717:C:T	rs35989912	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr20	62686433	62686434	chr20:62686434:G:A	rs78987422	G	A	G	Sox1.mouse_HMG_2	0	1	-	3.546060750361652	3.2801175565922196	CGGAGTTGCATTCAT
chr20	62841033	62841034	chr20:62841034:A:G	rs3664	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr20	62845563	62845564	chr20:62845564:T:G	rs1183558052	T	G	T	Sox1.mouse_HMG_2	13	1	-	6.787005115041571	0.4662891059122237	CTGACTTTCATTTAA
chr20	63019600	63019601	chr20:63019601:G:A	rs114147630	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.048793830594421	-1.5966087024217979	CTGAATAACTTTGAT
chr20	63057535	63057536	chr20:63057536:G:T	rs6062787	G	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr20	63082687	63082688	chr20:63082688:C:T	rs58926663	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr20	63122760	63122761	chr20:63122761:A:G	rs78748903	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr20	63139132	63139133	chr20:63139133:G:A	rs75175692	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr20	63262036	63262037	chr20:63262037:C:T	rs80089062	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr20	63262037	63262038	chr20:63262038:G:A	rs77015723	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr20	63318350	63318351	chr20:63318351:G:A	rs6062890	G	A	G	Sox1.mouse_HMG_2	4	1	-	5.454878915061661	1.0155272137685123	CTGTCTTCCATTCAC
chr20	63460988	63460989	chr20:63460989:G:A	rs6122454	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr20	63585454	63585455	chr20:63585455:C:T	rs311500	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr20	63655516	63655517	chr20:63655517:C:T	rs3761125	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr21	6375345	6375346	chr21:6375346:T:C	rs1329261743	T	C	.	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr21	6375356	6375357	chr21:6375357:A:G	rs1388484349	A	G	.	Sox1.mouse_HMG_2	6	1	+	5.586844134073674	4.146666712205034	TTGACCACCATTCAA
chr21	6376783	6376784	chr21:6376784:G:A	rs1317006287	G	A	.	Sox1.mouse_HMG_2	2	1	+	3.3553660834395744	-1.2900364495766419	CAGAATATCACTCAG
chr21	7258580	7258581	chr21:7258581:A:G	rs1438729587	A	G	.	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr21	7258598	7258599	chr21:7258599:A:G	rs1490309547	A	G	.	Sox1.mouse_HMG_2	13	1	-	5.44967405850969	2.323321602538636	TTCAATTCCATTCTA
chr21	7258604	7258605	chr21:7258605:G:A	chr21:7258605:G:A	G	A	.	Sox1.mouse_HMG_2	7	1	-	5.44967405850969	4.988729604802583	TTCAATTCCATTCTA
chr21	7952194	7952195	chr21:7952195:C:G	rs1203904549	C	G	.	Sox1.mouse_HMG_2	2	1	+	5.380257225362279	10.772874160208719	GTCAATTCCATTCTA
chr21	7955542	7955543	chr21:7955543:C:T	rs1421310927	C	T	.	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr21	7955579	7955580	chr21:7955580:T:A	rs1417244447	T	A	.	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr21	8990027	8990028	chr21:8990028:G:T	rs796177462	G	T	.	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr21	8990069	8990070	chr21:8990070:T:C	rs368606564	T	C	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr21	9005767	9005768	chr21:9005768:C:T	rs1807010	C	T	.	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr21	9008228	9008229	chr21:9008229:T:C	rs374109499	T	C	.	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr21	9738436	9738437	chr21:9738437:C:G	rs1482534385	C	G	.	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr21	9778988	9778989	chr21:9778989:G:A	rs1229317846	G	A	.	Sox1.mouse_HMG_2	2	1	+	6.3606129167633485	1.7152103837471313	ATGAATTGGAGTCAG
chr21	10021207	10021208	chr21:10021208:T:C	rs867112965	T	C	.	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr21	10417839	10417840	chr21:10417840:G:A	rs7278427	G	A	g	Sox1.mouse_HMG_2	14	1	-	6.594224107663239	7.468836450385975	ATGGATACCAGTCAC
chr21	10668612	10668613	chr21:10668613:T:C	rs28970961	T	C	.	Sox1.mouse_HMG_2	7	1	+	4.790301125016488	5.251245578723593	TTGCATTTCATTCTT
chr21	10685059	10685060	chr21:10685060:C:G	rs111669253	C	G	.	Sox1.mouse_HMG_2	2	1	+	4.632739323383126	10.025356258229566	ATCAATTCCATTCGA
chr21	10693407	10693408	chr21:10693408:T:A	rs867634053	T	A	.	Sox1.mouse_HMG_2	5	1	+	3.6594930187917614	-3.2492617605234595	CTCAATTGCATTCGA
chr21	10706441	10706442	chr21:10706442:A:G	rs776867282	A	G	.	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr21	10734450	10734451	chr21:10734451:T:G	rs771280033	T	G	.	Sox1.mouse_HMG_2	11	1	+	4.482036401962716	-2.426718377352504	TTCAATACCATTCCT
chr21	10734458	10734459	chr21:10734459:A:G	rs28735724	A	G	.	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr21	13808517	13808518	chr21:13808518:C:T	rs17207852	C	T	.	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr21	14499710	14499711	chr21:14499711:G:A	rs28385569	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr21	14527900	14527901	chr21:14527901:T:C	rs2822750	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr21	14683246	14683247	chr21:14683247:G:T	rs12482612	G	T	T	Sox1.mouse_HMG_2	7	1	-	3.5584503184319614	3.955135039100031	AACACTACCATTCAG
chr21	14711469	14711470	chr21:14711470:C:T	rs148823909	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr21	14753237	14753238	chr21:14753238:T:C	rs2822900	T	C	C	Sox1.mouse_HMG_2	14	1	+	3.433467462486288	2.5588551197635523	ATGAATTCCAGACTT
chr21	14864500	14864501	chr21:14864501:T:C	rs148103904	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.548640703699332	-2.3601140756158885	TTGCCTAACAGTCAT
chr21	14887699	14887700	chr21:14887700:T:C	rs73895206	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.6143233914103226	-1.294431387904898	TTGAAAAACATTCTC
chr21	14959531	14959532	chr21:14959532:G:T	rs1297214	G	T	G	Sox1.mouse_HMG_2	12	1	-	2.2532173691779747	-4.64723128128839	CTGAGAAACATTCAC
chr21	14959546	14959547	chr21:14959547:G:A	rs6517118	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr21	14995931	14995932	chr21:14995932:A:G	rs2823001	A	G	A	Sox1.mouse_HMG_2	14	1	+	4.199479407810341	4.364120655705289	CTGAATTCCTTTCTA
chr21	15037567	15037568	chr21:15037568:G:T	rs2248589	G	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr21	15306832	15306833	chr21:15306833:A:G	rs982774	A	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr21	15566962	15566963	chr21:15566963:G:A	rs2065236	G	A	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr21	15692431	15692432	chr21:15692432:G:A	rs114134170	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr21	15743429	15743430	chr21:15743430:T:A	rs7277813	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr21	15848635	15848636	chr21:15848636:C:T	rs140598237	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr21	15858086	15858087	chr21:15858087:C:G	rs78470636	C	G	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr21	16004844	16004845	chr21:16004845:C:T	rs73189383	C	T	C	Sox1.mouse_HMG_2	7	1	+	2.5791318744535037	2.1181874207463967	GCGAACTCCATTCAG
chr21	16087186	16087187	chr21:16087187:C:T	rs2823608	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr21	16190948	16190949	chr21:16190949:C:A	rs2051347	C	A	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr21	16259499	16259500	chr21:16259500:T:C	rs4381854	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr21	16370009	16370010	chr21:16370010:A:G	rs2823756	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr21	16439694	16439695	chr21:16439695:T:C	rs57190849	T	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr21	16464417	16464418	chr21:16464418:G:C	rs61549904	G	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr21	16624668	16624669	chr21:16624669:A:T	rs79910324	A	T	A	Sox1.mouse_HMG_2	9	1	+	7.619808902614807	0.7110541232995866	GTGCATTACATTCAG
chr21	16830685	16830686	chr21:16830686:A:G	rs2223075	A	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr21	16913153	16913154	chr21:16913154:G:A	rs2824122	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr21	17085509	17085510	chr21:17085510:A:G	rs2824226	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr21	17463554	17463555	chr21:17463555:C:T	rs73322442	C	T	C	Sox1.mouse_HMG_2	14	1	+	5.5443950655466265	6.419007408269363	CTGAATACCACTCTC
chr21	17679232	17679233	chr21:17679233:G:C	rs76398997	G	C	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr21	17792593	17792594	chr21:17792594:C:T	rs2220511	C	T	T	Sox1.mouse_HMG_2	14	1	+	2.638493825642942	3.513106168365678	ATGCATCACAGTCAC
chr21	17866745	17866746	chr21:17866746:C:T	rs56242993	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr21	17883352	17883353	chr21:17883353:C:G	rs2824532	C	G	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr21	17987850	17987851	chr21:17987851:T:G	rs191391859	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr21	18336029	18336030	chr21:18336030:C:T	rs989891	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr21	18411842	18411843	chr21:18411843:G:A	rs117544315	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr21	18588424	18588425	chr21:18588425:T:C	rs1735742	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.669655200207333	4.795042857484597	AGGAACAACATTCAT
chr21	18601615	18601616	chr21:18601616:T:G	rs728430	T	G	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr21	18717087	18717088	chr21:18717088:T:C	rs2210241	T	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr21	18769870	18769871	chr21:18769871:C:A	rs2825087	C	A	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr21	19296036	19296037	chr21:19296037:T:C	rs7280348	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr21	19824293	19824294	chr21:19824294:C:G	rs2825822	C	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr21	20207705	20207706	chr21:20207706:A:T	rs951076	A	T	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr21	20662897	20662898	chr21:20662898:C:T	rs2826434	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr21	20732376	20732377	chr21:20732377:C:G	rs2826494	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr21	20883112	20883113	chr21:20883113:G:T	rs2826585	G	T	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr21	21242658	21242659	chr21:21242659:G:C	rs8129983	G	C	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr21	21605762	21605763	chr21:21605763:C:A	rs74336637	C	A	C	Sox1.mouse_HMG_2	12	1	+	4.494862182603924	-2.405586467862439	TTGTATTACATTCTG
chr21	21789029	21789030	chr21:21789030:A:G	rs34273942	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr21	22020413	22020414	chr21:22020414:G:A	rs28713311	G	A	-	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr21	22248552	22248553	chr21:22248553:A:G	rs138890202	A	G	A	Sox1.mouse_HMG_2	6	1	+	5.67796132905619	4.237783907187551	AGGAATAACATTGAT
chr21	22410518	22410519	chr21:22410519:G:A	rs2827498	G	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr21	22712658	22712659	chr21:22712659:C:G	rs7281391	C	G	C	Sox1.mouse_HMG_2	2	1	-	3.934834291947972	-1.457782642898466	ATGAATATCATATAG
chr21	23009149	23009150	chr21:23009150:G:T	rs244248	G	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr21	23539339	23539340	chr21:23539340:A:C	rs11087875	A	C	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr21	23608019	23608020	chr21:23608020:A:G	rs11909010	A	G	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr21	24119229	24119230	chr21:24119230:A:G	rs1699674	A	G	g	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr21	24123600	24123601	chr21:24123601:T:C	rs2828844	T	C	t	Sox1.mouse_HMG_2	6	1	+	7.836460107963731	4.325050540016761	CTAACTTACATTCAG
chr21	24898063	24898064	chr21:24898064:G:C	rs2250059	G	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr21	25340589	25340590	chr21:25340590:A:T	rs62222165	A	T	A	Sox1.mouse_HMG_2	1	1	-	8.624045135250007	3.9800528277567757	ATGAAATACATTCAG
chr21	25574087	25574088	chr21:25574088:C:T	rs190708267	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr21	25837601	25837602	chr21:25837602:A:G	rs9982115	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr21	26071003	26071004	chr21:26071004:C:T	rs12626415	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr21	26086092	26086093	chr21:26086093:A:G	rs2830045	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr21	26463611	26463612	chr21:26463612:G:A	rs114447013	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr21	26463614	26463615	chr21:26463615:C:A	rs116538073	C	A	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr21	27034726	27034727	chr21:27034727:G:A	rs432557	G	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr21	27056255	27056256	chr21:27056256:T:C	rs2088379	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr21	27102226	27102227	chr21:27102227:T:C	rs12710375	T	C	T	Sox1.mouse_HMG_2	4	1	-	6.591694534229541	-0.22971823493053234	GTGAATATCAGTCCT
chr21	27103160	27103161	chr21:27103161:A:G	rs2212822	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr21	27244507	27244508	chr21:27244508:C:A	rs76107548	C	A	.	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr21	27244509	27244510	chr21:27244510:C:T	rs75490269	C	T	.	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr21	27321684	27321685	chr21:27321685:T:C	rs239710	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr21	27340420	27340421	chr21:27340421:A:C	rs459204	A	C	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr21	27340468	27340469	chr21:27340469:C:T	rs9974765	C	T	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr21	27691717	27691718	chr21:27691718:A:G	rs2831090	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.1001201808330565	-1.7212925883270156	TAGAATAACACTCAT
chr21	27885724	27885725	chr21:27885725:G:A	rs1023141	G	A	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr21	28007608	28007609	chr21:28007609:T:A	rs1964798	T	A	T	Sox1.mouse_HMG_2	9	1	-	3.326155753764183	-3.582599025551036	GTGACTAACAGGCAG
chr21	28132833	28132834	chr21:28132834:C:A	rs79343138	C	A	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr21	28180452	28180453	chr21:28180453:T:C	rs2831614	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.9753121359731676	-0.6686801715200654	ATGAATAGAAATCAG
chr21	28224529	28224530	chr21:28224530:G:T	rs2831668	G	T	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr21	28263075	28263076	chr21:28263076:C:A	rs9981545	C	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr21	28336543	28336544	chr21:28336544:T:C	rs1624839	T	C	T	Sox1.mouse_HMG_2	14	1	-	4.666882398999777	4.831523646894725	CTGATTATCATTCTA
chr21	28432696	28432697	chr21:28432697:A:T	rs11700996	A	T	A	Sox1.mouse_HMG_2	4	1	+	4.313597195075196	-2.507815574084877	TTGAACATCATTCTA
chr21	28744390	28744391	chr21:28744391:A:G	rs2832044	A	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr21	28744430	28744431	chr21:28744431:T:C	rs2832045	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr21	28754203	28754204	chr21:28754204:G:A	rs78394380	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr21	28834447	28834448	chr21:28834448:A:G	rs11701468	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr21	28884729	28884730	chr21:28884730:G:T	rs8133511	G	T	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr21	29133658	29133659	chr21:29133659:G:A	rs76276670	G	A	g	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr21	29261831	29261832	chr21:29261832:A:T	rs142990591	A	T	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr21	29313241	29313242	chr21:29313242:C:T	rs2832281	C	T	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr21	29316748	29316749	chr21:29316749:G:T	rs1153291	G	T	T	Sox1.mouse_HMG_2	12	1	-	4.642454668445729	-2.257993982020636	ATGACCTACAGTCAT
chr21	29342276	29342277	chr21:29342277:G:A	rs411697	G	A	G	Sox1.mouse_HMG_2	2	1	-	8.644037611667985	7.139960214891708	TTCAATTCCATTCAA
chr21	29416585	29416586	chr21:29416586:T:C	rs77064044	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr21	29465513	29465514	chr21:29465514:C:T	rs146530540	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr21	29825871	29825872	chr21:29825872:G:A	rs383743	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr21	29953219	29953220	chr21:29953220:C:T	rs977779	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr21	30104445	30104446	chr21:30104446:C:T	rs2832622	C	T	T	Sox1.mouse_HMG_2	0	1	-	4.764294232802558	5.7685304654377605	GGGAATGTCATTCTA
chr21	30327886	30327887	chr21:30327887:G:A	rs1893093	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr21	31072498	31072499	chr21:31072499:A:C	rs2070407	A	C	A	Sox1.mouse_HMG_2	13	1	+	9.732188696684977	3.4114726875556314	ATAAATACCAGTCAT
chr21	31222173	31222174	chr21:31222174:C:T	rs77926910	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr21	31284076	31284077	chr21:31284077:T:C	rs139658105	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr21	31352421	31352422	chr21:31352422:A:G	rs9647143	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr21	31492386	31492387	chr21:31492387:C:T	rs2154515	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr21	31495498	31495499	chr21:31495499:C:T	rs4816399	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr21	31629892	31629893	chr21:31629893:C:A	rs55867217	C	A	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr21	31665644	31665645	chr21:31665645:C:T	rs118132937	C	T	.	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr21	31675004	31675005	chr21:31675005:T:C	rs2833476	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr21	31771717	31771718	chr21:31771718:G:A	rs11088189	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr21	31793420	31793421	chr21:31793421:G:A	rs1057375650	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr21	31997333	31997334	chr21:31997334:G:T	rs9985101	G	T	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr21	32030272	32030273	chr21:32030273:A:T	rs113972467	A	T	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr21	32098316	32098317	chr21:32098317:T:C	rs2833652	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr21	32256896	32256897	chr21:32256897:C:A	rs145615682	C	A	C	Sox1.mouse_HMG_2	12	1	+	3.9561609926431713	-2.944287657823192	GTGAATAAGACTCAT
chr21	32317981	32317982	chr21:32317982:C:A	rs2070380	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr21	32423891	32423892	chr21:32423892:T:C	rs2833805	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr21	32537811	32537812	chr21:32537812:T:C	rs2833867	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr21	32544515	32544516	chr21:32544516:G:C	rs2833874	G	C	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr21	32726889	32726890	chr21:32726890:C:T	rs61750221	C	T	C	Sox1.mouse_HMG_2	5	1	+	4.0434044426430455	10.952159221958269	CTGAACGCCATTCTC
chr21	32782771	32782772	chr21:32782772:T:C	rs2833951	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr21	33079105	33079106	chr21:33079106:A:G	rs941937072	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.5824599889359403	-3.32629479037928	CTGCATGTCATTCTC
chr21	33079123	33079124	chr21:33079124:G:A	rs77944250	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr21	33086465	33086466	chr21:33086466:A:G	rs58912052	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr21	33199288	33199289	chr21:33199289:T:G	rs73903125	T	G	T	Sox1.mouse_HMG_2	4	1	-	6.402324242995599	4.020263175128679	GTGAATTGCAGTTAG
chr21	33215544	33215545	chr21:33215545:T:C	rs561315240	T	C	T	Sox1.mouse_HMG_2	4	1	-	14.581356775443659	7.759944006283586	TTGAATATCATTCAG
chr21	33413118	33413119	chr21:33413119:G:A	rs746810661	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.881855200744311	-0.7625714896376751	CTGCATGACAGTCAC
chr21	33495777	33495778	chr21:33495778:A:G	rs9975975	A	G	G	Sox1.mouse_HMG_2	7	1	+	2.93264043816693	2.231585618625856	CTGACTGACATCCTT
chr21	33894712	33894713	chr21:33894713:C:T	rs77596640	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr21	33949980	33949981	chr21:33949981:G:T	rs138277543	G	T	g	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr21	33981087	33981088	chr21:33981088:A:T	rs62226717	A	T	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr21	34256576	34256577	chr21:34256577:A:G	rs2834425	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr21	34541669	34541670	chr21:34541670:C:T	rs2040122	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr21	34562159	34562160	chr21:34562160:T:C	rs2834542	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr21	34574646	34574647	chr21:34574647:C:G	rs8132211	C	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr21	34637151	34637152	chr21:34637152:A:G	rs73353738	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr21	34640261	34640262	chr21:34640262:G:A	rs59971892	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr21	34713114	34713115	chr21:34713115:T:C	rs11911845	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr21	34906644	34906645	chr21:34906645:A:G	rs1475840	A	G	A	Sox1.mouse_HMG_2	7	1	+	8.842293852549956	8.141239033008882	TTGAATTACATGCAT
chr21	34906667	34906668	chr21:34906668:C:T	rs1011174187	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr21	34997148	34997149	chr21:34997149:C:T	rs73900767	C	T	T	Sox1.mouse_HMG_2	14	1	+	9.52997893658515	10.404591279307885	TTAAATTGCATTCAC
chr21	35095967	35095968	chr21:35095968:G:A	rs138232942	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr21	35098780	35098781	chr21:35098781:T:C	rs2834761	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr21	35129823	35129824	chr21:35129824:T:C	rs2834785	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr21	35202536	35202537	chr21:35202537:A:T	rs16992935	A	T	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr21	35266817	35266818	chr21:35266818:C:T	chr21:35266818:C:T	C	T	C	Sox1.mouse_HMG_2	6	1	-	3.883750215797098	5.323927637665737	GGCAATGTCATTCAT
chr21	35266823	35266824	chr21:35266824:C:T	rs558316982	C	T	C	Sox1.mouse_HMG_2	0	1	-	3.883750215797098	4.887986448432301	GGCAATGTCATTCAT
chr21	35346777	35346778	chr21:35346778:T:C	rs2834916	T	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr21	35346788	35346789	chr21:35346789:A:G	rs13050967	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr21	35520650	35520651	chr21:35520651:T:C	rs374148	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr21	35526556	35526557	chr21:35526557:G:A	rs1734893	G	A	g	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr21	35526586	35526587	chr21:35526587:A:G	rs1734892	A	G	G	Sox1.mouse_HMG_2	1	1	-	4.133224721469776	-0.5107675860234581	CTGACTCACATTTAA
chr21	36079191	36079192	chr21:36079192:A:G	rs775033887	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr21	36176638	36176639	chr21:36176639:C:G	rs2835297	C	G	g	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr21	36265912	36265913	chr21:36265913:T:C	rs73381530	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr21	36481023	36481024	chr21:36481024:G:C	rs115270476	G	C	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr21	36500424	36500425	chr21:36500425:T:G	rs76415705	T	G	T	Sox1.mouse_HMG_2	14	1	+	4.7350259983534615	3.5819578815657227	ATACATTCCATTCAT
chr21	36566430	36566431	chr21:36566431:C:T	rs377239	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.515171902523384	-1.1302306304928313	GAGATTTGCATTCAT
chr21	36679953	36679954	chr21:36679954:T:A	rs1571699	T	A	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr21	36889500	36889501	chr21:36889501:G:C	rs116465372	G	C	G	Sox1.mouse_HMG_2	2	1	+	8.679776720696218	3.2871597858497803	TTGACTATCATTTAT
chr21	36926023	36926024	chr21:36926024:C:T	rs2845812	C	T	C	Sox1.mouse_HMG_2	4	1	+	2.10310941220932	-2.3362422890838306	CTGACTGCCTGTCAC
chr21	36967601	36967602	chr21:36967602:C:T	rs767242662	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr21	36976362	36976363	chr21:36976363:G:A	rs2154530	G	A	G	Sox1.mouse_HMG_2	10	1	+	2.8121927351547074	-1.2831513274004767	CTGACTATCAGTAAG
chr21	36985974	36985975	chr21:36985975:G:A	rs58844217	G	A	g	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr21	36991007	36991008	chr21:36991008:G:C	rs3938831	G	C	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr21	36992684	36992685	chr21:36992685:G:A	rs2187102	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr21	37140140	37140141	chr21:37140141:A:T	rs2835625	A	T	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr21	37208007	37208008	chr21:37208008:A:G	rs7277820	A	G	G	Sox1.mouse_HMG_2	14	1	+	7.972713294569098	8.137354542464045	ATAAATACCATTCTA
chr21	37329882	37329883	chr21:37329883:A:C	rs11909066	A	C	a	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr21	37476243	37476244	chr21:37476244:C:T	rs62222285	C	T	c	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr21	37557655	37557656	chr21:37557656:C:T	rs34271447	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr21	37828132	37828133	chr21:37828133:G:C	rs2835995	G	C	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr21	37994223	37994224	chr21:37994224:T:C	rs2836101	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr21	38080575	38080576	chr21:38080576:C:T	rs2836140	C	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr21	38191766	38191767	chr21:38191767:G:T	rs1892569	G	T	t	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr21	38261800	38261801	chr21:38261801:C:T	rs2836253	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr21	38277827	38277828	chr21:38277828:T:G	rs78742532	T	G	T	Sox1.mouse_HMG_2	1	1	+	5.602603610307859	0.6541401237360499	TTGACCTTCATTCAT
chr21	38310596	38310597	chr21:38310597:C:G	rs73423919	C	G	C	Sox1.mouse_HMG_2	6	1	-	12.191277671526354	9.279040090706626	ATGAATGGCATTCTT
chr21	38310610	38310611	chr21:38310611:G:A	rs9636933	G	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr21	38323746	38323747	chr21:38323747:T:A	rs147856762	T	A	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr21	38392861	38392862	chr21:38392862:T:C	rs2836362	T	C	.	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr21	38480085	38480086	chr21:38480086:C:T	rs80016003	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr21	38544322	38544323	chr21:38544323:T:C	rs2836497	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr21	38591199	38591200	chr21:38591200:C:A	rs2836544	C	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr21	38729527	38729528	chr21:38729528:A:T	rs2836647	A	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr21	38747843	38747844	chr21:38747844:G:A	rs2836657	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.549055944803374	-0.12353115886488097	GTAACTAACATTCGT
chr21	38790482	38790483	chr21:38790483:A:C	rs573879672	A	C	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr21	38839435	38839436	chr21:38839436:G:A	rs16996874	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr21	38860509	38860510	chr21:38860510:C:T	rs465214	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr21	38883237	38883238	chr21:38883238:A:T	rs7283319	A	T	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr21	39015026	39015027	chr21:39015027:A:T	rs75454551	A	T	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr21	39182634	39182635	chr21:39182635:G:A	rs73221192	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr21	39445013	39445014	chr21:39445014:T:C	rs9983716	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr21	39445028	39445029	chr21:39445029:G:C	rs553420104	G	C	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr21	39556608	39556609	chr21:39556609:A:G	rs2837076	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr21	39598256	39598257	chr21:39598257:G:T	rs663956	G	T	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr21	39604953	39604954	chr21:39604954:C:A	rs62222820	C	A	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr21	39806208	39806209	chr21:39806209:C:G	rs378814	C	G	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr21	39942164	39942165	chr21:39942165:C:T	rs11910451	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr21	39983220	39983221	chr21:39983221:T:C	rs741774	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr21	40146473	40146474	chr21:40146474:T:G	rs2837456	T	G	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr21	40146927	40146928	chr21:40146928:A:G	rs2837459	A	G	G	Sox1.mouse_HMG_2	7	1	+	11.344404721966354	10.643349902425276	CTGAATTACATTTAT
chr21	40146949	40146950	chr21:40146950:T:C	rs2837460	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr21	40452924	40452925	chr21:40452925:A:G	rs1040315	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr21	40516350	40516351	chr21:40516351:G:A	rs138537827	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr21	40534673	40534674	chr21:40534674:G:T	rs16999939	G	T	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr21	40547495	40547496	chr21:40547496:T:C	rs2837696	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr21	40641295	40641296	chr21:40641296:A:C	rs9980127	A	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr21	40641334	40641335	chr21:40641335:A:G	rs9980140	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr21	40679790	40679791	chr21:40679791:A:G	rs9975590	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.986309394378078	-0.8351033747819928	TTCAATAGCATTCTA
chr21	40684976	40684977	chr21:40684977:T:C	rs13047833	T	C	t	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr21	40830883	40830884	chr21:40830884:C:T	rs2837841	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr21	41144399	41144400	chr21:41144400:G:T	rs9984070	G	T	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr21	41209473	41209474	chr21:41209474:G:A	rs117710348	G	A	G	Sox1.mouse_HMG_2	6	1	+	3.6415186513147173	5.081696073183355	AGGAATGCCAGTCTG
chr21	41209497	41209498	chr21:41209498:C:T	rs746063	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr21	41378384	41378385	chr21:41378385:T:C	rs78231422	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr21	41402613	41402614	chr21:41402614:A:G	rs466092	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr21	41433194	41433195	chr21:41433195:C:T	rs458939	C	T	T	Sox1.mouse_HMG_2	10	1	-	3.9143577977669963	-0.18098626478818713	TTGCATTTCAGTCAA
chr21	41597324	41597325	chr21:41597325:G:C	rs11911492	G	C	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr21	41691253	41691254	chr21:41691254:A:T	rs73216946	A	T	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr21	41758429	41758430	chr21:41758430:G:A	rs73371615	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr21	41765269	41765270	chr21:41765270:G:C	rs147886020	G	C	G	Sox1.mouse_HMG_2	11	1	-	5.380948934110447	5.380948934110447	TTGAATACCAGCCAG
chr21	41902880	41902881	chr21:41902881:T:C	rs426173	T	C	C	Sox1.mouse_HMG_2	9	1	-	3.068300394105682	-3.8404543852095383	CTCATTAGCATTCAC
chr21	41928302	41928303	chr21:41928303:T:C	rs117314964	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr21	42048257	42048258	chr21:42048258:T:G	rs2839456	T	G	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr21	42063114	42063115	chr21:42063115:C:T	rs8128195	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr21	42065969	42065970	chr21:42065970:A:C	rs13340012	A	C	A	Sox1.mouse_HMG_2	3	1	+	7.113145907731229	0.20439112841600707	CTGACTTGCATTCGC
chr21	42195448	42195449	chr21:42195449:G:A	rs8131660	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr21	42195459	42195460	chr21:42195460:G:T	rs113637965	G	T	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr21	42195489	42195490	chr21:42195490:G:C	rs544719205	G	C	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr21	42226214	42226215	chr21:42226215:G:C	rs187470640	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr21	42231594	42231595	chr21:42231595:T:C	rs3787972	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr21	42231625	42231626	chr21:42231626:A:G	rs78927979	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.2872030568589867	-1.6589146309136615	AGGAATTCCATTAAG
chr21	42259402	42259403	chr21:42259403:C:T	rs915842	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr21	42385682	42385683	chr21:42385683:G:A	rs958597476	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.846271949146341	-0.8263151545219142	GTGAACTTCATTCTC
chr21	42405755	42405756	chr21:42405756:A:T	rs75579847	A	T	A	Sox1.mouse_HMG_2	13	1	+	3.8073291084906327	0.6129655553323403	ATGAATAAGACTCAG
chr21	42424730	42424731	chr21:42424731:T:C	rs883869	T	C	C	Sox1.mouse_HMG_2	11	1	+	6.323102803131286	-0.5856519761839343	CTAAATTGCATTCTG
chr21	42438380	42438381	chr21:42438381:C:T	rs116989574	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr21	42438381	42438382	chr21:42438382:G:A	rs1893593	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr21	42516438	42516439	chr21:42516439:T:C	rs74516908	T	C	T	Sox1.mouse_HMG_2	0	1	-	2.726904301162553	1.7226680685273514	ATGACTGACATGCTC
chr21	42585223	42585224	chr21:42585224:T:C	rs1788414	T	C	C	Sox1.mouse_HMG_2	11	1	-	4.198529204702357	4.198529204702357	ATGAATAGGATACAT
chr21	42607810	42607811	chr21:42607811:C:T	rs73908237	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr21	42612862	42612863	chr21:42612863:A:T	rs374651	A	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr21	42614298	42614299	chr21:42614299:A:C	rs147724643	A	C	A	Sox1.mouse_HMG_2	13	1	+	10.02170131411299	3.700985304983643	ATAAATTGCATTCAA
chr21	42637223	42637224	chr21:42637224:T:C	rs11702507	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.463538737328736	-3.3578740318313365	TGGAATACCATGCAC
chr21	42748880	42748881	chr21:42748881:C:T	rs17115411	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr21	42973588	42973589	chr21:42973589:G:T	rs144981423	G	T	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr21	42976840	42976841	chr21:42976841:C:T	rs415763	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr21	43277979	43277980	chr21:43277980:C:T	chr21:43277980:C:T	C	T	.	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr21	43311008	43311009	chr21:43311009:A:G	rs502083	A	G	.	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr21	43779230	43779231	chr21:43779231:T:A	rs9984420	T	A	t	Sox1.mouse_HMG_2	12	1	+	3.863688820294578	1.635827273496469	GTGACTTTCAGTTAG
chr21	43848972	43848973	chr21:43848973:T:C	rs4819323	T	C	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr21	43935647	43935648	chr21:43935648:T:C	rs9978688	T	C	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr21	44054240	44054241	chr21:44054241:G:A	rs1042119374	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr21	44454360	44454361	chr21:44454361:C:T	rs2186932	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr21	44479974	44479975	chr21:44479975:C:A	rs60036065	C	A	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr21	44584270	44584271	chr21:44584271:C:T	rs460085	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr21	44813056	44813057	chr21:44813057:A:G	rs17217834	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr21	44845584	44845585	chr21:44845585:T:C	rs56399780	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr21	44867639	44867640	chr21:44867640:T:C	rs189287	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr21	44867664	44867665	chr21:44867665:C:T	rs2838721	C	T	C	Sox1.mouse_HMG_2	14	1	+	11.825786401000864	12.700398743723598	GTGACTGACATTCAC
chr21	44990116	44990117	chr21:44990117:A:C	rs115043955	A	C	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr21	44990154	44990155	chr21:44990155:C:T	rs36221483	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr21	45054742	45054743	chr21:45054743:G:A	rs55701646	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr21	45064696	45064697	chr21:45064697:T:C	rs72613652	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr21	45155012	45155013	chr21:45155013:C:T	rs187685921	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr21	45228119	45228120	chr21:45228120:G:T	rs77438163	G	T	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr21	45254444	45254445	chr21:45254445:G:A	rs35064782	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr21	45382046	45382047	chr21:45382047:C:T	rs34387081	C	T	C	Sox1.mouse_HMG_2	8	1	+	2.366921372419721	-3.277505317962266	GTGACTTCCAGACAC
chr21	45431103	45431104	chr21:45431104:C:T	rs78754819	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr21	45527454	45527455	chr21:45527455:A:G	rs377378680	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr21	45527650	45527651	chr21:45527651:T:C	rs10522693	T	C	a	Sox1.mouse_HMG_2	3	1	-	4.916520128969357	-1.9922346503458634	CTGACTGCCACTCAC
chr21	45580683	45580684	chr21:45580684:A:G	rs9982738	A	G	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr21	45584774	45584775	chr21:45584775:T:C	rs11700708	T	C	C	Sox1.mouse_HMG_2	1	1	+	4.457072331658677	-0.18691997583455866	CTGTATGTCATTCTT
chr21	45748422	45748423	chr21:45748423:C:T	rs117296616	C	T	c	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr21	45763981	45763982	chr21:45763982:A:G	rs3367	A	G	A	Sox1.mouse_HMG_2	3	1	-	7.860231900227817	7.860231900227817	ATGTATGACATTCAA
chr21	45867505	45867506	chr21:45867506:C:T	rs535284653	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr21	45867538	45867539	chr21:45867539:C:T	rs3788219	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr21	46347264	46347265	chr21:46347265:G:A	rs76934171	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr21	46384640	46384641	chr21:46384641:G:T	rs61640854	G	T	-	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr21	46600023	46600024	chr21:46600024:T:C	rs2239575	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr22	10716901	10716902	chr22:10716902:C:T	rs1253256349	C	T	.	Sox1.mouse_HMG_2	7	1	-	4.042087110027324	4.743141929568399	TGGAATAGCATTGAT
chr22	10717059	10717060	chr22:10717060:G:C	chr22:10717060:G:C	G	C	.	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	10717061	10717062	chr22:10717062:C:T	rs878919857	C	T	.	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr22	10721715	10721716	chr22:10721716:C:G	rs1227534642	C	G	.	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr22	10727076	10727077	chr22:10727077:G:A	rs1248585011	G	A	.	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr22	10727237	10727238	chr22:10727238:T:C	rs1314394324	T	C	.	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr22	10727757	10727758	chr22:10727758:A:C	rs1467109072	A	C	.	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr22	10773036	10773037	chr22:10773037:G:A	rs1262352817	G	A	.	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr22	15636846	15636847	chr22:15636847:G:A	rs715491	G	A	.	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr22	15815075	15815076	chr22:15815076:C:G	rs7291414	C	G	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr22	15937055	15937056	chr22:15937056:A:T	rs1384470218	A	T	.	Sox1.mouse_HMG_2	14	1	-	5.888955704504352	4.571246339821665	CTCACTAACATTCTT
chr22	16094297	16094298	chr22:16094298:A:G	rs1275471180	A	G	.	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr22	16532044	16532045	chr22:16532045:G:A	rs9604821	G	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	16929237	16929238	chr22:16929238:C:T	rs5994093	C	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr22	16953630	16953631	chr22:16953631:T:C	rs5748762	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr22	17015358	17015359	chr22:17015359:C:G	rs7286578	C	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr22	17066386	17066387	chr22:17066387:C:G	rs9606594	C	G	C	Sox1.mouse_HMG_2	14	1	+	3.254272369186576	2.9758165951215734	GAGAAGTACATTCAC
chr22	17106768	17106769	chr22:17106769:G:A	rs73381911	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr22	17106789	17106790	chr22:17106790:A:G	rs2241049	A	G	a	Sox1.mouse_HMG_2	3	1	+	5.402376707479161	-1.5063780718360582	TCCAATAACATTCAG
chr22	17162952	17162953	chr22:17162953:G:A	rs5994187	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr22	17307064	17307065	chr22:17307065:A:C	rs17735045	A	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr22	17350550	17350551	chr22:17350551:T:C	rs5994287	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr22	17350558	17350559	chr22:17350559:C:A	rs76076841	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	17370842	17370843	chr22:17370843:T:A	rs5992672	T	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr22	17370880	17370881	chr22:17370881:T:C	rs5992673	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr22	17536818	17536819	chr22:17536819:A:G	rs174335	A	G	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr22	17542070	17542071	chr22:17542071:A:G	rs1296795	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	17690090	17690091	chr22:17690091:C:T	rs2535699	C	T	c	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr22	17690123	17690124	chr22:17690124:G:T	rs2535700	G	T	g	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr22	17733625	17733626	chr22:17733626:T:C	rs16981066	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr22	17738064	17738065	chr22:17738065:A:G	rs11538	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.901833743601613	-3.0069210357136065	GTTAATAAAATTCAC
chr22	17752587	17752588	chr22:17752588:C:A	rs188616494	C	A	C	Sox1.mouse_HMG_2	7	1	+	1.5029499413217116	1.8996346619897813	GTGAATACCACTAAC
chr22	17847302	17847303	chr22:17847303:T:C	rs12484835	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr22	17853441	17853442	chr22:17853442:A:C	rs377074467	A	C	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr22	17861192	17861193	chr22:17861193:G:A	rs997458	G	A	G	Sox1.mouse_HMG_2	8	1	-	8.931717785314083	3.287291094932094	TAGAATTTCATTCAA
chr22	18145947	18145948	chr22:18145948:C:T	rs361534	C	T	.	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr22	19022635	19022636	chr22:19022636:T:C	rs62230772	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr22	19081508	19081509	chr22:19081509:T:A	rs916945	T	A	T	Sox1.mouse_HMG_2	11	1	+	1.975457080331907	-4.933297698983314	GTGTATAACATTCCA
chr22	19083866	19083867	chr22:19083867:C:T	rs71328286	C	T	c	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr22	19290051	19290052	chr22:19290052:C:T	rs184519688	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr22	19317796	19317797	chr22:19317797:A:G	rs111235086	A	G	A	Sox1.mouse_HMG_2	0	1	-	3.8238253505949134	4.089768544364346	TGGAATATTATTCAA
chr22	19443872	19443873	chr22:19443873:T:C	rs756649	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr22	19511163	19511164	chr22:19511164:A:T	rs9606043	A	T	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	19563690	19563691	chr22:19563691:A:G	rs1053801785	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr22	19568899	19568900	chr22:19568900:G:C	rs5746776	G	C	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr22	19580294	19580295	chr22:19580295:C:T	rs9604979	C	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr22	19607090	19607091	chr22:19607091:T:G	rs9618621	T	G	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr22	19873603	19873604	chr22:19873604:T:C	rs7285948	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr22	19910084	19910085	chr22:19910085:C:A	rs73880003	C	A	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr22	20000643	20000644	chr22:20000644:G:A	rs4819852	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr22	20297081	20297082	chr22:20297082:G:A	rs9617874	G	A	.	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr22	20440636	20440637	chr22:20440637:C:T	rs59848556	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr22	20532134	20532135	chr22:20532135:C:T	rs114996979	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr22	20572337	20572338	chr22:20572338:G:A	rs165918	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr22	20663596	20663597	chr22:20663597:T:C	rs2098295	T	C	t	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr22	20663631	20663632	chr22:20663632:A:T	rs617767	A	T	N	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr22	20807275	20807276	chr22:20807276:G:C	rs5760728	G	C	G	Sox1.mouse_HMG_2	4	1	+	2.20451055795989	6.6438622592530425	GTGAGTACCAGTCTG
chr22	20826522	20826523	chr22:20826523:C:A	rs5760858	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr22	20951635	20951636	chr22:20951636:T:C	chr22:20951636:T:C	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr22	20980583	20980584	chr22:20980584:G:C	rs13057408	G	C	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr22	20980589	20980590	chr22:20980590:A:T	rs8137006	A	T	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr22	21037677	21037678	chr22:21037678:C:T	rs554230168	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr22	21579490	21579491	chr22:21579491:C:T	rs181366	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr22	21713396	21713397	chr22:21713397:A:C	rs137994598	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr22	21713404	21713405	chr22:21713405:G:A	rs149606236	G	A	g	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr22	21713432	21713433	chr22:21713433:C:T	rs8139619	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr22	21876729	21876730	chr22:21876730:G:A	rs370201434	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr22	21935024	21935025	chr22:21935025:G:A	rs5995269	G	A	A	Sox1.mouse_HMG_2	8	1	-	2.004072855287644	-3.640353835094342	GTGAACAGCCTTCAT
chr22	21937921	21937922	chr22:21937922:C:G	rs57574744	C	G	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr22	22078698	22078699	chr22:22078699:A:G	rs4821687	A	G	g	Sox1.mouse_HMG_2	3	1	+	4.080139047193005	-2.828615732122215	TTGAGTTAAATTCAT
chr22	22102371	22102372	chr22:22102372:A:G	rs6000949	A	G	.	Sox1.mouse_HMG_2	10	1	-	4.132393267355978	-2.7155483109243037	GTGACTGGCATTTTT
chr22	22184347	22184348	chr22:22184348:A:G	rs6001219	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr22	22231976	22231977	chr22:22231977:G:A	rs34019992	G	A	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr22	22241653	22241654	chr22:22241654:C:A	rs7289443	C	A	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr22	22382104	22382105	chr22:22382105:C:T	rs7289376	C	T	.	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr22	22389195	22389196	chr22:22389196:C:T	rs2097199	C	T	.	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr22	22400034	22400035	chr22:22400035:A:G	rs78884711	A	G	.	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr22	22403436	22403437	chr22:22403437:A:G	rs402244	A	G	.	Sox1.mouse_HMG_2	14	1	-	5.537286115008282	4.662673772285546	CAGACTTGCAGTCAT
chr22	22459636	22459637	chr22:22459637:T:G	rs73389419	T	G	N	Sox1.mouse_HMG_2	4	1	+	1.552162549636901	1.552162549636901	CTGTTTAGCATTCAC
chr22	22480403	22480404	chr22:22480404:T:C	rs76062800	T	C	c	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr22	22574839	22574840	chr22:22574840:T:C	rs715593	T	C	t	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr22	22580413	22580414	chr22:22580414:C:T	rs459939	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr22	22580423	22580424	chr22:22580424:C:T	rs6002823	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr22	22649308	22649309	chr22:22649309:T:C	rs4050552	T	C	.	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr22	22666876	22666877	chr22:22666877:C:A	rs57729294	C	A	.	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr22	22708410	22708411	chr22:22708411:T:A	rs1807704	T	A	.	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr22	22710424	22710425	chr22:22710425:T:A	rs5759404	T	A	.	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr22	22710438	22710439	chr22:22710439:G:A	rs5759405	G	A	.	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr22	22722566	22722567	chr22:22722567:C:G	rs4822295	C	G	.	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr22	22754525	22754526	chr22:22754526:A:G	rs62220403	A	G	.	Sox1.mouse_HMG_2	13	1	+	3.104714377216883	-1.841403310555765	AGGAATTTCATTGAC
chr22	22754543	22754544	chr22:22754544:T:C	rs11705144	T	C	.	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr22	22756157	22756158	chr22:22756158:G:C	rs865921385	G	C	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr22	22795388	22795389	chr22:22795389:T:C	rs6003307	T	C	.	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr22	22801804	22801805	chr22:22801805:A:G	rs2040346	A	G	.	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr22	22930480	22930481	chr22:22930481:T:C	rs403478	T	C	.	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr22	22946092	22946093	chr22:22946093:A:G	rs5996421	A	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr22	22950777	22950778	chr22:22950778:G:A	rs12166415	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr22	22950821	22950822	chr22:22950822:C:T	rs9612173	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr22	23147025	23147026	chr22:23147026:C:G	rs115667459	C	G	C	Sox1.mouse_HMG_2	1	1	-	4.828649765465938	5.133120944544513	AGGAATTACCTTCAT
chr22	23278089	23278090	chr22:23278090:A:G	rs55844144	A	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr22	23408542	23408543	chr22:23408543:T:C	rs4822395	T	C	N	Sox1.mouse_HMG_2	14	1	-	6.466974370838875	6.631615618733822	CTGAATAACAGTCCA
chr22	23408548	23408549	chr22:23408549:G:A	rs4822396	G	A	N	Sox1.mouse_HMG_2	8	1	-	6.466974370838875	0.8225476804568875	CTGAATAACAGTCCA
chr22	23460627	23460628	chr22:23460628:C:T	chr22:23460628:C:T	C	T	c	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr22	23517508	23517509	chr22:23517509:G:T	rs114090144	G	T	g	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr22	23517552	23517553	chr22:23517553:T:A	rs184059905	T	A	t	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr22	23529395	23529396	chr22:23529396:G:A	rs117199617	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr22	23573464	23573465	chr22:23573465:G:A	rs73157031	G	A	.	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr22	23707389	23707390	chr22:23707390:G:A	rs60422275	G	A	g	Sox1.mouse_HMG_2	0	1	-	3.50060643589076	3.2346632421213255	CTGAATGCCACTTAT
chr22	23806345	23806346	chr22:23806346:A:G	rs2267033	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr22	23832322	23832323	chr22:23832323:G:A	rs9612481	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr22	23920025	23920026	chr22:23920026:C:A	rs76795716	C	A	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr22	23946479	23946480	chr22:23946480:A:G	rs1250864256	A	G	a	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr22	23987034	23987035	chr22:23987035:G:A	rs9624374	G	A	-	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr22	23992516	23992517	chr22:23992517:G:A	rs140287	G	A	C	Sox1.mouse_HMG_2	7	1	+	2.0995603518455956	2.8006151713866716	GTGAATAGCAGTGTC
chr22	24451637	24451638	chr22:24451638:T:A	rs1041750	T	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr22	24482772	24482773	chr22:24482773:C:T	rs1547359	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr22	25086013	25086014	chr22:25086014:A:C	rs562706645	A	C	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr22	25086021	25086022	chr22:25086022:T:G	rs77161003	T	G	T	Sox1.mouse_HMG_2	7	1	-	5.30525017356755	4.90856545289948	CAGCATAACATTCAT
chr22	25207585	25207586	chr22:25207586:G:A	rs5760904	G	A	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr22	25354267	25354268	chr22:25354268:T:A	rs5761042	T	A	.	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	25354313	25354314	chr22:25354314:G:A	rs73404703	G	A	.	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr22	25355447	25355448	chr22:25355448:C:T	rs5752142	C	T	.	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr22	25362877	25362878	chr22:25362878:G:A	rs117409212	G	A	.	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr22	25401475	25401476	chr22:25401476:G:A	rs58722185	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr22	25493417	25493418	chr22:25493418:A:C	rs6004675	A	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr22	25661193	25661194	chr22:25661194:C:A	rs16980523	C	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr22	25669654	25669655	chr22:25669655:A:G	rs139526151	A	G	A	Sox1.mouse_HMG_2	4	1	+	2.7074679843833085	-4.1139447847767645	GGGAATAGCACTCAA
chr22	25747741	25747742	chr22:25747742:C:T	rs181300266	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr22	25758540	25758541	chr22:25758541:C:T	rs5761165	C	T	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr22	25901174	25901175	chr22:25901175:C:T	rs77999892	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr22	25996267	25996268	chr22:25996268:A:G	rs5761347	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	26106542	26106543	chr22:26106543:A:G	rs134707	A	G	G	Sox1.mouse_HMG_2	13	1	-	7.142221118525165	4.0158686625541105	GAGAATTGCATTCTT
chr22	26226312	26226313	chr22:26226313:C:A	rs9613134	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr22	26228671	26228672	chr22:26228672:G:A	rs78825100	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr22	26259785	26259786	chr22:26259786:C:T	rs1207396	C	T	T	Sox1.mouse_HMG_2	7	1	+	2.958786859217773	2.4978424055106663	TGGAATGCCAATCAT
chr22	26286117	26286118	chr22:26286118:T:C	rs73156899	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr22	26362816	26362817	chr22:26362817:G:T	rs738405	G	T	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr22	26503227	26503228	chr22:26503228:G:A	rs116156744	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	26597079	26597080	chr22:26597080:G:T	rs75422898	G	T	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr22	26714295	26714296	chr22:26714296:C:T	rs5761697	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr22	26725400	26725401	chr22:26725401:A:G	rs5761705	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr22	26812747	26812748	chr22:26812748:G:A	rs1894622	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr22	26847531	26847532	chr22:26847532:C:T	rs112029463	C	T	C	Sox1.mouse_HMG_2	7	1	+	1.8565326485099052	1.3955881948027984	CTGAGCACCATTCAC
chr22	26888100	26888101	chr22:26888101:C:A	rs3233	C	A	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr22	26953588	26953589	chr22:26953589:G:A	rs9608543	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr22	26953595	26953596	chr22:26953596:T:C	rs5006715	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	26958505	26958506	chr22:26958506:G:T	rs116886183	G	T	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr22	27146881	27146882	chr22:27146882:A:G	rs16983783	A	G	a	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr22	27474238	27474239	chr22:27474239:G:A	rs117346362	G	A	g	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr22	27527608	27527609	chr22:27527609:T:C	rs953825875	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr22	27614802	27614803	chr22:27614803:C:G	rs111793105	C	G	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr22	27667766	27667767	chr22:27667767:C:A	rs134079	C	A	A	Sox1.mouse_HMG_2	8	1	+	3.8490404347228875	-1.0004563807892117	GTGAATAACAATTAG
chr22	27886705	27886706	chr22:27886706:C:A	rs138946417	C	A	A	Sox1.mouse_HMG_2	8	1	+	7.96768150982722	3.1181846943151212	TTGTATTACATTCAC
chr22	28026028	28026029	chr22:28026029:A:G	rs7286519	A	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr22	28248063	28248064	chr22:28248064:C:A	rs143511569	C	A	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr22	28329939	28329940	chr22:28329940:G:C	rs76485229	G	C	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr22	28514688	28514689	chr22:28514689:G:A	rs75533475	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	28514690	28514691	chr22:28514691:G:A	rs117790963	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr22	28712067	28712068	chr22:28712068:A:C	rs766631976	A	C	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr22	28712448	28712449	chr22:28712449:C:T	rs17879919	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr22	28750514	28750515	chr22:28750515:G:A	rs5752785	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr22	28908211	28908212	chr22:28908212:A:T	rs469990	A	T	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr22	28986842	28986843	chr22:28986843:A:G	rs12627758	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr22	29065161	29065162	chr22:29065162:T:A	rs134561	T	A	T	Sox1.mouse_HMG_2	7	1	-	9.755566791748914	8.89793761737374	ATTAATAACATTCAC
chr22	29113315	29113316	chr22:29113316:A:C	rs12628129	A	C	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr22	29380060	29380061	chr22:29380061:T:C	rs5763179	T	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr22	29432136	29432137	chr22:29432137:C:T	rs202003076	C	T	c	Sox1.mouse_HMG_2	12	1	+	3.2812427268092903	-1.3913443768589642	ATGGATTCCATTCGG
chr22	29504267	29504268	chr22:29504268:G:A	rs187036869	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr22	29738070	29738071	chr22:29738071:A:G	rs35398643	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr22	29853590	29853591	chr22:29853591:C:G	rs61540772	C	G	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr22	29946391	29946392	chr22:29946392:G:C	rs9614111	G	C	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr22	30256457	30256458	chr22:30256458:C:A	rs9608854	C	A	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr22	30565954	30565955	chr22:30565955:A:G	rs73881480	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr22	30619574	30619575	chr22:30619575:G:A	rs7288627	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr22	30743330	30743331	chr22:30743331:G:A	rs926340	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr22	30784690	30784691	chr22:30784691:G:A	rs12165718	G	A	g	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr22	30793807	30793808	chr22:30793808:T:C	rs136292	T	C	C	Sox1.mouse_HMG_2	5	1	+	1.611523139980191	-5.2972316393350285	CTGCATTCCAGTCTG
chr22	31079508	31079509	chr22:31079509:C:T	rs1003379305	C	T	c	Sox1.mouse_HMG_2	5	1	+	4.241891126952571	11.15064590626779	GTGACCGCCATTCAG
chr22	31184786	31184787	chr22:31184787:C:T	rs62237396	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr22	31244770	31244771	chr22:31244771:T:A	rs944272324	T	A	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr22	31264471	31264472	chr22:31264472:C:T	rs78935071	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr22	31280467	31280468	chr22:31280468:T:C	rs1858821	T	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr22	31445762	31445763	chr22:31445763:T:A	rs738657	T	A	t	Sox1.mouse_HMG_2	12	1	+	6.290395461563251	4.062533914765142	ATGAATACAATTTAA
chr22	31600638	31600639	chr22:31600639:A:C	rs1018490	A	C	A	Sox1.mouse_HMG_2	3	1	+	3.4334674624862864	-3.4752873168289313	ATGAACTCCAGTCTT
chr22	31755227	31755228	chr22:31755228:A:G	rs5998114	A	G	G	Sox1.mouse_HMG_2	12	1	+	4.955181608699445	4.955181608699445	TTGAATTGCATTATT
chr22	31871162	31871163	chr22:31871163:G:A	rs11912177	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr22	31912749	31912750	chr22:31912750:G:C	rs59635570	G	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr22	31923303	31923304	chr22:31923304:G:A	rs16989657	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr22	32150958	32150959	chr22:32150959:C:T	rs2019949	C	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr22	32232263	32232264	chr22:32232264:C:T	rs78335429	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr22	32283655	32283656	chr22:32283656:C:T	rs5998378	C	T	c	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr22	32314862	32314863	chr22:32314863:C:T	rs12166399	C	T	t	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr22	32319166	32319167	chr22:32319167:C:G	rs9609506	C	G	g	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr22	32344056	32344057	chr22:32344057:G:A	rs2076034	G	A	g	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr22	32564426	32564427	chr22:32564427:T:C	rs116787506	T	C	T	Sox1.mouse_HMG_2	14	1	-	8.59935450255538	8.763995750450327	ATGAAAAGCATTCAA
chr22	32565578	32565579	chr22:32565579:C:T	rs5754148	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr22	32582972	32582973	chr22:32582973:T:C	rs2710356	T	C	T	Sox1.mouse_HMG_2	10	1	+	1.5521625496368991	-5.295779028643381	CTGAGCAGCATTCAC
chr22	32612390	32612391	chr22:32612391:A:G	rs62232744	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr22	32629254	32629255	chr22:32629255:A:G	rs2157168	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr22	32646222	32646223	chr22:32646223:C:T	rs131065	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr22	32700424	32700425	chr22:32700425:A:C	chr22:32700425:A:C	A	C	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr22	32700463	32700464	chr22:32700464:G:A	rs189661448	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr22	32762698	32762699	chr22:32762699:G:A	rs5998624	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr22	32802596	32802597	chr22:32802597:G:A	rs12169569	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr22	32862119	32862120	chr22:32862120:T:A	rs370344672	T	A	T	Sox1.mouse_HMG_2	14	1	+	4.19689131953374	2.8791819548510533	TTAAACTACATTCAT
chr22	33014219	33014220	chr22:33014220:C:A	rs4560230	C	A	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr22	33049974	33049975	chr22:33049975:T:C	rs5754397	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr22	33057546	33057547	chr22:33057547:A:G	rs13057166	A	G	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr22	33180718	33180719	chr22:33180719:A:G	rs137365	A	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr22	33183783	33183784	chr22:33183784:C:A	rs137384	C	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr22	33220101	33220102	chr22:33220102:G:A	rs9306274	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr22	33350637	33350638	chr22:33350638:G:A	rs17723309	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr22	33390264	33390265	chr22:33390265:T:C	rs9609775	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.911321382816483	0.2673290753232477	ATGAATTTCACTCTC
chr22	33424269	33424270	chr22:33424270:G:T	rs8138344	G	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	33538477	33538478	chr22:33538478:T:C	rs4820106	T	C	T	Sox1.mouse_HMG_2	1	1	+	2.451585870169837	-2.1924064373233962	ATGAATAGCATTACG
chr22	33538498	33538499	chr22:33538499:A:C	rs7289066	A	C	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr22	33569413	33569414	chr22:33569414:T:A	rs76739169	T	A	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr22	33720551	33720552	chr22:33720552:G:A	rs5749652	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr22	33832598	33832599	chr22:33832599:C:G	rs4821189	C	G	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr22	33924468	33924469	chr22:33924469:G:A	rs12628949	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr22	34111150	34111151	chr22:34111151:G:A	rs117114797	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr22	34121243	34121244	chr22:34121244:A:G	rs5749736	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr22	34493467	34493468	chr22:34493468:A:C	rs130699	A	C	A	Sox1.mouse_HMG_2	9	1	+	3.286485989343788	-3.6222687899714305	CAGAAAAGCATTCAA
chr22	34579108	34579109	chr22:34579109:C:A	rs73403644	C	A	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr22	34626821	34626822	chr22:34626822:C:T	rs147938619	C	T	-	Sox1.mouse_HMG_2	1	1	+	1.671776026105003	6.315768333598236	ACGAAAACCAGTCAG
chr22	34833837	34833838	chr22:34833838:C:A	rs9610158	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr22	34843840	34843841	chr22:34843841:G:A	rs5755364	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.6020386597387013	-1.0705484439295536	GTGATTAACATTCGG
chr22	34854495	34854496	chr22:34854496:A:G	rs7285148	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr22	34964392	34964393	chr22:34964393:T:C	rs77945845	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.4990054748086106	-1.1449868326846226	TTGCATGCCATTCTG
chr22	34972548	34972549	chr22:34972549:A:G	rs5995042	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr22	35303110	35303111	chr22:35303111:T:G	rs79884643	T	G	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr22	35426100	35426101	chr22:35426101:G:C	rs8140062	G	C	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	35490106	35490107	chr22:35490107:C:G	rs73154028	C	G	C	Sox1.mouse_HMG_2	2	1	-	6.582932155949759	1.1903152211033214	CTGAGTAGCAGTCAT
chr22	35563696	35563697	chr22:35563697:T:G	rs16995846	T	G	T	Sox1.mouse_HMG_2	0	1	-	2.245913380552535	1.5770371748341765	ATGAATTCCACTCCC
chr22	35633365	35633366	chr22:35633366:G:A	rs932468	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr22	35644362	35644363	chr22:35644363:A:G	rs5999910	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr22	35644406	35644407	chr22:35644407:T:A	rs5999911	T	A	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr22	35648304	35648305	chr22:35648305:G:T	rs112979011	G	T	T	Sox1.mouse_HMG_2	7	1	+	2.867909605744874	2.711335250910773	CTGACTTGGATTCTG
chr22	35648309	35648310	chr22:35648310:C:T	rs1170558515	C	T	C	Sox1.mouse_HMG_2	12	1	+	2.867909605744874	-1.8046774979233813	CTGACTTGGATTCTG
chr22	35836106	35836107	chr22:35836107:G:A	rs79330410	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr22	36080616	36080617	chr22:36080617:A:G	rs6000118	A	G	g	Sox1.mouse_HMG_2	5	1	-	2.2519778572541838	-4.656776922061037	CTGAATATCACTGAT
chr22	36145676	36145677	chr22:36145677:G:T	rs1807672	G	T	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr22	36156968	36156969	chr22:36156969:G:A	rs777528499	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr22	36178718	36178719	chr22:36178719:A:G	rs132681	A	G	g	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr22	36222122	36222123	chr22:36222123:A:T	rs71314967	A	T	A	Sox1.mouse_HMG_2	3	1	+	5.87607999366609	-1.0326747856491303	GAGAATAAAATTCAG
chr22	36261072	36261073	chr22:36261073:C:G	rs136160	C	G	c	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr22	36329149	36329150	chr22:36329150:G:T	rs79296526	G	T	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr22	36329152	36329153	chr22:36329153:G:T	rs141486204	G	T	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr22	36369188	36369189	chr22:36369189:G:C	rs181679466	G	C	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	36424676	36424677	chr22:36424677:T:G	rs28491141	T	G	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr22	36441214	36441215	chr22:36441215:G:A	rs2012831	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr22	36734566	36734567	chr22:36734567:A:G	rs147897770	A	G	A	Sox1.mouse_HMG_2	14	1	-	3.8894888661207188	3.014876523397983	ATCAATGTCAGTCTT
chr22	36856757	36856758	chr22:36856758:G:C	rs6000452	G	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr22	37248074	37248075	chr22:37248075:T:C	rs6000632	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.813677272081161	-3.0950775072340595	TATAATTCCATTCAT
chr22	37345416	37345417	chr22:37345417:A:G	rs763080	A	G	A	Sox1.mouse_HMG_2	7	1	+	3.7093639074639215	3.0083090879228456	ATGCATAACATGCAT
chr22	37400936	37400937	chr22:37400937:G:C	rs8138380	G	C	C	Sox1.mouse_HMG_2	14	1	+	3.122423653381598	3.4008794274466005	AAGTATTTCATTCAG
chr22	37457660	37457661	chr22:37457661:A:T	rs59219177	A	T	A	Sox1.mouse_HMG_2	1	1	-	3.0713401309324824	-1.5726521765607497	ATGAAGCACATTCTT
chr22	37462355	37462356	chr22:37462356:G:A	rs73414290	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr22	37487819	37487820	chr22:37487820:T:C	rs3761441	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr22	37512585	37512586	chr22:37512586:C:T	rs185443625	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr22	37512602	37512603	chr22:37512603:G:C	rs80184311	G	C	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr22	37809052	37809053	chr22:37809053:A:G	rs763137	A	G	g	Sox1.mouse_HMG_2	5	1	-	2.5862220552632023	-4.322532724052017	ATGATTACCACTCAC
chr22	37844495	37844496	chr22:37844496:C:T	rs79991825	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr22	37844511	37844512	chr22:37844512:C:T	chr22:37844512:C:T	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.0390464486832824	-1.6335406549849725	GTGACTGACAGACAT
chr22	37932589	37932590	chr22:37932590:A:G	rs34834842	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr22	38237012	38237013	chr22:38237013:C:T	rs56207984	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr22	38264559	38264560	chr22:38264560:G:A	rs7290882	G	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr22	38304757	38304758	chr22:38304758:G:A	rs73884679	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr22	38312500	38312501	chr22:38312501:G:A	rs56182369	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr22	38421099	38421100	chr22:38421100:C:T	rs138402	C	T	C	Sox1.mouse_HMG_2	12	1	+	2.270012523729428	-2.4025745799388267	TTGCCTGCCATTCTT
chr22	38676466	38676467	chr22:38676467:G:A	rs5750662	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr22	38699647	38699648	chr22:38699648:T:C	rs149593440	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.682923639044678	3.242746217176039	ATCACTACCATTTAT
chr22	38754056	38754057	chr22:38754057:G:A	rs143646352	G	A	.	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr22	38884940	38884941	chr22:38884941:A:C	rs118862	A	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr22	38945951	38945952	chr22:38945952:T:C	rs5750711	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.3247453037630423	-1.3192470037301907	ATGACCTACAGTCAA
chr22	39049374	39049375	chr22:39049375:G:A	rs2014881	G	A	g	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr22	39179215	39179216	chr22:39179216:A:G	rs12627955	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr22	39265026	39265027	chr22:39265027:A:C	rs5757582	A	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr22	39304752	39304753	chr22:39304753:C:T	rs17000979	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr22	39365227	39365228	chr22:39365228:G:A	rs11913073	G	A	g	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr22	39449541	39449542	chr22:39449542:A:G	rs5757681	A	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr22	39521319	39521320	chr22:39521320:C:G	rs144184225	C	G	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr22	39601624	39601625	chr22:39601625:C:T	rs713865	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr22	39631650	39631651	chr22:39631651:T:C	rs55898159	T	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr22	40218670	40218671	chr22:40218671:A:T	rs78666753	A	T	A	Sox1.mouse_HMG_2	9	1	+	2.93264043816693	-3.9761143411482895	CTGACAGACATTCTT
chr22	40458451	40458452	chr22:40458452:G:T	rs28419341	G	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	40765044	40765045	chr22:40765045:C:G	rs5758065	C	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr22	40964639	40964640	chr22:40964640:T:C	rs146854087	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	41197932	41197933	chr22:41197933:C:T	rs2179727	C	T	C	Sox1.mouse_HMG_2	8	1	+	7.4237551336208485	1.7793284432388612	ATGAATAACTTTCTT
chr22	41197940	41197941	chr22:41197941:T:G	rs7288252	T	G	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr22	41205023	41205024	chr22:41205024:C:A	rs1163802135	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	41205049	41205050	chr22:41205050:G:A	chr22:41205050:G:A	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr22	41416814	41416815	chr22:41416815:T:C	rs202663	T	C	C	Sox1.mouse_HMG_2	3	1	-	6.355639530594292	-0.5531152487209291	CTGAATTACAGGCAT
chr22	41560594	41560595	chr22:41560595:C:T	rs12166110	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr22	41727394	41727395	chr22:41727395:C:T	rs738422	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr22	41844792	41844793	chr22:41844793:C:T	rs2284082	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr22	41903530	41903531	chr22:41903531:A:G	rs17379759	A	G	A	Sox1.mouse_HMG_2	9	1	+	9.316994836464787	2.408240057149566	TTGACTTTCATTCTT
chr22	41948292	41948293	chr22:41948293:G:A	rs8140869	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr22	41963788	41963789	chr22:41963789:G:A	rs8137409	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr22	42002190	42002191	chr22:42002191:T:C	rs11090066	T	C	T	Sox1.mouse_HMG_2	11	1	+	4.169706748881702	-2.7390480304335187	TTGAATTACCTTTAT
chr22	42090313	42090314	chr22:42090314:A:G	rs746736649	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr22	42090399	42090400	chr22:42090400:C:G	rs13056622	C	G	C	Sox1.mouse_HMG_2	13	1	-	1.5846488789632946	0.21005055760659597	GTGCCTAGCATTCGT
chr22	42277804	42277805	chr22:42277805:C:G	rs134885	C	G	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr22	42440330	42440331	chr22:42440331:A:C	rs1016110	A	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	42444718	42444719	chr22:42444719:C:T	rs183732093	C	T	C	Sox1.mouse_HMG_2	13	1	-	4.354291634323807	9.300409322096455	ATGAAGAACATTCGA
chr22	42499005	42499006	chr22:42499006:T:A	rs56169883	T	A	T	Sox1.mouse_HMG_2	3	1	-	3.813803625372535	-3.0949511539426866	TGGACTTGCAGTCAG
chr22	42532917	42532918	chr22:42532918:A:G	rs56306647	A	G	-	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr22	42613980	42613981	chr22:42613981:G:A	rs150308198	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr22	42614002	42614003	chr22:42614003:A:G	rs144872028	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr22	42615229	42615230	chr22:42615230:C:T	rs192384900	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr22	42615231	42615232	chr22:42615232:A:G	rs75975947	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr22	42650087	42650088	chr22:42650088:G:T	rs11705171	G	T	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr22	42715429	42715430	chr22:42715430:T:C	rs28992183	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.1490763701142725	-2.7596784092009488	CTGAATTACATTTCC
chr22	42774875	42774876	chr22:42774876:C:T	rs7285149	C	T	t	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr22	42829959	42829960	chr22:42829960:T:C	rs75865036	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr22	42930103	42930104	chr22:42930104:C:T	rs4822231	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr22	42934261	42934262	chr22:42934262:T:C	chr22:42934262:T:C	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr22	42958123	42958124	chr22:42958124:T:C	rs5759057	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.9956474929829113	-2.825765276177161	ATGAATATCACTTAG
chr22	43019574	43019575	chr22:43019575:C:T	rs13057591	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.440089163311117	-1.2043375270708703	CTGAATGACATGCTC
chr22	43053501	43053502	chr22:43053502:T:C	rs2038063	T	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr22	43067326	43067327	chr22:43067327:T:C	rs2235380	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr22	43110628	43110629	chr22:43110629:C:T	rs4988372	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr22	43202374	43202375	chr22:43202375:G:A	rs12484656	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.4334674624862864	2.9725230087791803	ATGAACTCCAGTCTT
chr22	43476362	43476363	chr22:43476363:C:T	rs5759356	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr22	43617643	43617644	chr22:43617644:C:A	rs78076034	C	A	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr22	43795774	43795775	chr22:43795775:A:G	rs5764304	A	G	A	Sox1.mouse_HMG_2	12	1	-	4.544610629807615	9.217197733475869	GTGAAAACCATTTAT
chr22	43862778	43862779	chr22:43862779:A:G	rs138108	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr22	43945785	43945786	chr22:43945786:A:G	rs13055900	A	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr22	43945791	43945792	chr22:43945792:T:C	rs13055874	T	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr22	43979861	43979862	chr22:43979862:C:T	rs11090620	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr22	44178523	44178524	chr22:44178524:G:A	rs2092351	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr22	44215100	44215101	chr22:44215101:G:A	rs139209	G	A	G	Sox1.mouse_HMG_2	6	1	+	1.8246536381443175	3.2648310600129564	CTGCCTGCCAGTCAG
chr22	44260870	44260871	chr22:44260871:C:T	rs135435	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr22	44500458	44500459	chr22:44500459:C:T	rs5765694	C	T	c	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr22	44528314	44528315	chr22:44528315:G:A	rs5765740	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr22	44528351	44528352	chr22:44528352:G:A	rs529552988	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr22	44541410	44541411	chr22:44541411:G:A	rs57219831	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr22	44714995	44714996	chr22:44714996:A:G	rs1077163	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr22	44760319	44760320	chr22:44760320:A:C	rs78500736	A	C	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr22	44796740	44796741	chr22:44796741:A:G	rs9626245	A	G	a	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	44796779	44796780	chr22:44796780:G:A	rs1001728	G	A	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr22	44882028	44882029	chr22:44882029:A:G	rs762978	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr22	44986729	44986730	chr22:44986730:C:T	rs4823429	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr22	45031883	45031884	chr22:45031884:G:A	rs5016581	G	A	g	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr22	45031988	45031989	chr22:45031989:T:G	rs73890112	T	G	t	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	45037034	45037035	chr22:45037035:G:A	rs2038250	G	A	g	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr22	45037046	45037047	chr22:45037047:G:T	rs6007418	G	T	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr22	45051048	45051049	chr22:45051049:C:T	rs6007434	C	T	t	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr22	45114419	45114420	chr22:45114420:C:T	rs73167227	C	T	C	Sox1.mouse_HMG_2	0	1	-	2.9511259624269446	3.955362195062147	GAGAAAAGCATTCAA
chr22	45117706	45117707	chr22:45117707:T:C	rs112293180	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr22	45155189	45155190	chr22:45155190:T:C	rs132829	T	C	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr22	45155215	45155216	chr22:45155216:A:C	rs114542844	A	C	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr22	45158928	45158929	chr22:45158929:C:T	rs73432244	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr22	45158931	45158932	chr22:45158932:T:G	chr22:45158932:T:G	T	G	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr22	45158949	45158950	chr22:45158950:C:T	rs12483927	C	T	C	Sox1.mouse_HMG_2	13	1	-	6.601212939163213	11.54733062693586	GTGACTGACATTCGG
chr22	45218818	45218819	chr22:45218819:T:C	rs5766554	T	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	45218821	45218822	chr22:45218822:C:T	rs5766555	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr22	45277049	45277050	chr22:45277050:A:G	rs80000651	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr22	45389681	45389682	chr22:45389682:T:C	rs116787468	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr22	45598622	45598623	chr22:45598623:C:T	rs3788675	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr22	45682272	45682273	chr22:45682273:A:G	rs189501637	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr22	45687143	45687144	chr22:45687144:G:A	rs9614504	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr22	45717830	45717831	chr22:45717831:G:C	rs138155	G	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr22	45777893	45777894	chr22:45777894:C:T	rs73444661	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr22	45856215	45856216	chr22:45856216:A:G	rs5765672	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr22	45905086	45905087	chr22:45905087:A:G	rs9330797	A	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr22	45951723	45951724	chr22:45951724:G:A	rs10448596	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr22	46078761	46078762	chr22:46078762:T:G	rs563167575	T	G	T	Sox1.mouse_HMG_2	14	1	-	2.6980582176658547	3.141155239625805	GGGAATTCCATTCCA
chr22	46099237	46099238	chr22:46099238:C:T	rs73456723	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr22	46120363	46120364	chr22:46120364:G:C	rs547353535	G	C	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr22	46454632	46454633	chr22:46454633:C:T	rs13056658	C	T	T	Sox1.mouse_HMG_2	13	1	+	2.485095816008684	5.6114482719797385	CTGACTCACATTCCA
chr22	46462185	46462186	chr22:46462186:G:T	rs6520016	G	T	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr22	46604348	46604349	chr22:46604349:G:A	rs7286927	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr22	46641961	46641962	chr22:46641962:G:A	rs6008938	G	A	G	Sox1.mouse_HMG_2	7	1	+	5.094424546770791	5.7954793663118656	ATGAGTTGCATTCTC
chr22	46702822	46702823	chr22:46702823:T:C	rs79273339	T	C	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr22	46788885	46788886	chr22:46788886:A:G	rs6520053	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr22	46801421	46801422	chr22:46801422:C:T	rs73182618	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr22	46826883	46826884	chr22:46826884:A:G	rs139595	A	G	A	Sox1.mouse_HMG_2	9	1	+	2.119455526398556	-4.789299252916664	CTGGCTTGCAGTCAG
chr22	46843801	46843802	chr22:46843802:G:T	rs9627591	G	T	G	Sox1.mouse_HMG_2	2	1	+	3.8645859612745044	-3.0321083703482046	CTGCATCTCATTCAC
chr22	46854707	46854708	chr22:46854708:G:C	rs6008994	G	C	c	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr22	46854738	46854739	chr22:46854739:G:A	rs6008995	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr22	46872009	46872010	chr22:46872010:G:A	rs131860	G	A	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr22	46909985	46909986	chr22:46909986:C:T	rs4823584	C	T	T	Sox1.mouse_HMG_2	0	1	+	5.6908098773233275	5.424866683553895	CTAAATAGCATTCGC
chr22	46931848	46931849	chr22:46931849:T:C	rs1983566	T	C	T	Sox1.mouse_HMG_2	6	1	-	2.3916545427812355	0.9514771209125966	ATGCATAACATGCAA
chr22	46939330	46939331	chr22:46939331:G:A	rs56205905	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	46957618	46957619	chr22:46957619:G:A	rs136085	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	46957624	46957625	chr22:46957625:A:G	rs8138194	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr22	46997462	46997463	chr22:46997463:G:A	rs181137763	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr22	47045527	47045528	chr22:47045528:T:C	rs131900	T	C	T	Sox1.mouse_HMG_2	9	1	-	2.5942134441018947	-4.314541335213326	GTCATTACCATTCAA
chr22	47049015	47049016	chr22:47049016:C:G	rs131915	C	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr22	47062566	47062567	chr22:47062567:C:G	rs77455384	C	G	c	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr22	47062598	47062599	chr22:47062599:G:A	rs131927	G	A	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr22	47062602	47062603	chr22:47062603:C:T	rs131928	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr22	47176960	47176961	chr22:47176961:A:G	rs9626688	A	G	A	Sox1.mouse_HMG_2	13	1	+	2.1397068398233436	-2.8064108479493046	GCAACTGCCATTCAC
chr22	47310751	47310752	chr22:47310752:G:A	rs739115	G	A	G	Sox1.mouse_HMG_2	0	1	-	3.3853515801979297	3.1194083864284976	CTGAATACAATCCAA
chr22	47310768	47310769	chr22:47310769:G:A	rs5767665	G	A	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr22	47447659	47447660	chr22:47447660:T:C	rs130870	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	47540240	47540241	chr22:47540241:G:C	rs130474	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr22	47540254	47540255	chr22:47540255:C:A	rs130475	C	A	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr22	47569553	47569554	chr22:47569554:T:C	rs6008273	T	C	C	Sox1.mouse_HMG_2	1	1	+	8.503286615213243	3.8592943077200093	GTGAATTTCATTCCT
chr22	47613932	47613933	chr22:47613933:C:T	rs6008300	C	T	C	Sox1.mouse_HMG_2	5	1	+	1.4984274474630928	8.407182226778314	CTGAACTGCATGCAT
chr22	47615652	47615653	chr22:47615653:G:A	rs5767837	G	A	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr22	47680981	47680982	chr22:47680982:C:T	rs372222655	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.5470733661048177	-2.097353324277169	GTGAACCCCATTCAA
chr22	47687368	47687369	chr22:47687369:A:T	rs4823672	A	T	T	Sox1.mouse_HMG_2	4	1	+	5.2753162783384235	-1.546096490821649	ATGAATACCATCCGT
chr22	47776174	47776175	chr22:47776175:A:G	rs4447701	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr22	47887968	47887969	chr22:47887969:G:A	rs13053663	G	A	G	Sox1.mouse_HMG_2	12	1	-	2.112365246279142	-2.5602218573891133	GTGAATTCCATACGA
chr22	48052529	48052530	chr22:48052530:A:G	rs6008527	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr22	48055612	48055613	chr22:48055613:G:A	rs9626803	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr22	48297922	48297923	chr22:48297923:G:T	rs8141901	G	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr22	48354632	48354633	chr22:48354633:A:G	rs5768555	A	G	g	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr22	48370087	48370088	chr22:48370088:G:A	rs13347233	G	A	G	Sox1.mouse_HMG_2	13	1	+	2.9876614671371424	7.933779154909791	TTGATTGCCATTCGT
chr22	48392223	48392224	chr22:48392224:G:A	rs130787	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr22	48404267	48404268	chr22:48404268:T:A	rs130798	T	A	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr22	48404296	48404297	chr22:48404297:G:A	rs73888609	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr22	48427992	48427993	chr22:48427993:C:T	rs141020851	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr22	48581237	48581238	chr22:48581238:A:G	rs137929967	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr22	48605799	48605800	chr22:48605800:C:T	rs73889151	C	T	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr22	48616281	48616282	chr22:48616282:C:T	rs28638257	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr22	48650137	48650138	chr22:48650138:A:G	rs181853139	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.487259845013052	-2.4214949343021694	GTGAATTGCATTTGC
chr22	48657742	48657743	chr22:48657743:G:T	rs9617413	G	T	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr22	48670947	48670948	chr22:48670948:G:A	rs12484312	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr22	48702237	48702238	chr22:48702238:A:G	rs73175175	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr22	48758348	48758349	chr22:48758349:C:T	rs16999844	C	T	c	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr22	48880733	48880734	chr22:48880734:C:G	rs28715297	C	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	48943422	48943423	chr22:48943423:A:G	rs4607042	A	G	G	Sox1.mouse_HMG_2	6	1	-	3.802962121628099	0.291552553681128	CTCATTTACATTCAT
chr22	49001725	49001726	chr22:49001726:A:G	rs6009347	A	G	-	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr22	49027102	49027103	chr22:49027103:C:G	rs17000231	C	G	C	Sox1.mouse_HMG_2	6	1	-	7.4558515328551245	4.543613952035397	TTGATTGACATTCAC
chr22	49031185	49031186	chr22:49031186:A:G	rs5769819	A	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr22	49085777	49085778	chr22:49085778:T:C	rs5769884	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.955362195062147	-2.8660505740979247	AAGAACAGCATTCAA
chr22	49099629	49099630	chr22:49099630:G:A	rs57541169	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	49099631	49099632	chr22:49099632:G:A	rs8139249	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	49099656	49099657	chr22:49099657:G:A	rs8139261	G	A	g	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr22	49159275	49159276	chr22:49159276:A:G	rs9616469	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr22	49182155	49182156	chr22:49182156:G:A	rs5769445	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr22	49265210	49265211	chr22:49265211:T:C	rs1880008	T	C	t	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr22	49265222	49265223	chr22:49265223:G:A	rs74556162	G	A	a	Sox1.mouse_HMG_2	2	1	+	3.651669289251733	-0.9937332437644834	CCGAATACCAATCAA
chr22	49265242	49265243	chr22:49265243:T:C	rs62220567	T	C	t	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr22	49284336	49284337	chr22:49284337:A:G	rs9616549	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr22	49284350	49284351	chr22:49284351:G:C	rs60786252	G	C	C	Sox1.mouse_HMG_2	7	1	+	4.372051767311862	4.676421866184868	GTGCCTTGCATTCAA
chr22	49333962	49333963	chr22:49333963:T:C	rs848748	T	C	t	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr22	49337270	49337271	chr22:49337271:G:A	rs5769568	G	A	g	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr22	49337291	49337292	chr22:49337292:A:G	rs11702899	A	G	a	Sox1.mouse_HMG_2	7	1	-	5.552518198637912	6.013462652345019	ATCAATATAATTCAC
chr22	49337313	49337314	chr22:49337314:C:G	rs848740	C	G	c	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr22	49354603	49354604	chr22:49354604:G:C	rs1001320	G	C	g	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr22	49391982	49391983	chr22:49391983:G:A	rs5770368	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr22	49391994	49391995	chr22:49391995:T:C	rs5770369	T	C	C	Sox1.mouse_HMG_2	9	1	-	6.998367463502756	0.08961268418753587	ATGCCTTCCATTCAT
chr22	49419225	49419226	chr22:49419226:C:T	rs10854863	C	T	c	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr22	49521985	49521986	chr22:49521986:G:A	rs913822942	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr22	49675890	49675891	chr22:49675891:T:G	rs5770637	T	G	g	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr22	49703684	49703685	chr22:49703685:T:C	rs11703480	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.8645859612745044	-0.7794063462187285	CTGAAGCTCATTCAC
chr22	49747979	49747980	chr22:49747980:C:T	rs75652317	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr22	49764058	49764059	chr22:49764059:T:C	rs73439727	T	C	t	Sox1.mouse_HMG_2	5	1	+	3.5175454581112087	-3.391209321204011	CTGATTAATATTCAC
chr22	49851286	49851287	chr22:49851287:A:G	rs12330122	A	G	A	Sox1.mouse_HMG_2	10	1	-	1.802797546336099	-5.045144031944181	CTGCAGTCCATTCAT
chr22	50043821	50043822	chr22:50043822:G:A	rs8135472	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr22	50071828	50071829	chr22:50071829:T:C	rs2294394	T	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr22	50079796	50079797	chr22:50079797:A:C	rs11568176	A	C	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr22	50079809	50079810	chr22:50079810:T:C	rs2235349	T	C	T	Sox1.mouse_HMG_2	1	1	+	10.975437787068172	6.331445479574936	GTGAATAACATTTAC
chr22	50140383	50140384	chr22:50140384:A:G	rs2340603	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr22	50185546	50185547	chr22:50185547:G:C	rs78424351	G	C	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr22	50185585	50185586	chr22:50185586:A:C	rs1431265171	A	C	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr22	50289352	50289353	chr22:50289353:G:A	rs62241207	G	A	G	Sox1.mouse_HMG_2	14	1	-	8.753905840270123	9.628518182992858	CTCAATGCCATTCAC
chr22	50289362	50289363	chr22:50289363:T:C	rs28573806	T	C	C	Sox1.mouse_HMG_2	4	1	-	8.753905840270123	1.9324930711100488	CTCAATGCCATTCAC
chr22	50289364	50289365	chr22:50289365:G:A	rs145322724	G	A	G	Sox1.mouse_HMG_2	2	1	-	8.753905840270123	7.249828443493847	CTCAATGCCATTCAC
chr22	50293585	50293586	chr22:50293586:G:A	rs544254477	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr22	50293592	50293593	chr22:50293593:A:T	rs562453686	A	T	A	Sox1.mouse_HMG_2	11	1	-	3.732199991241242	-3.1765547880739775	GCGCATTCCATTCAT
chr22	50656497	50656498	chr22:50656498:C:T	rs9616810	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	53673	53674	chr3:53674:C:G	rs17075510	C	G	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	73648	73649	chr3:73649:A:C	rs79094998	A	C	A	Sox1.mouse_HMG_2	5	1	-	10.263620214931178	3.3548654356159577	AGGAATGACATTCAC
chr3	428109	428110	chr3:428110:T:C	rs115345203	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	464527	464528	chr3:464528:G:T	rs2729068	G	T	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	663609	663610	chr3:663610:T:G	rs2627977	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	770737	770738	chr3:770738:A:G	rs1523911	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr3	1090298	1090299	chr3:1090299:C:G	rs6797685	C	G	G	Sox1.mouse_HMG_2	12	1	+	3.1915374499123663	-3.708911200553997	CTAAAATCCATTCAC
chr3	1219780	1219781	chr3:1219781:T:C	rs2036234	T	C	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	1275604	1275605	chr3:1275605:T:C	rs12374025	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	1403039	1403040	chr3:1403040:T:C	rs56408876	T	C	T	Sox1.mouse_HMG_2	14	1	-	5.437101200982003	5.6017424488769505	ATGACTTGCACTCAA
chr3	1625052	1625053	chr3:1625053:G:C	rs1353815	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr3	1775036	1775037	chr3:1775037:G:A	rs13071826	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr3	1868042	1868043	chr3:1868043:G:A	rs9653977	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	1925801	1925802	chr3:1925802:T:C	rs79597704	T	C	T	Sox1.mouse_HMG_2	0	1	+	3.9548634608773474	4.22080665464678	TGGACTTCCATTCTC
chr3	1962566	1962567	chr3:1962567:T:C	rs17005939	T	C	T	Sox1.mouse_HMG_2	13	1	-	11.138668584961978	6.192550897189331	ATGAATTACATTTAC
chr3	2095845	2095846	chr3:2095846:T:C	rs78298421	T	C	T	Sox1.mouse_HMG_2	14	1	+	9.380428531369676	8.505816188646941	ATGTATTCCATTCAT
chr3	2095853	2095854	chr3:2095854:A:G	rs2729287	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr3	2142561	2142562	chr3:2142562:C:T	rs2727919	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	2270766	2270767	chr3:2270767:T:C	rs11915265	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr3	2371817	2371818	chr3:2371818:A:T	rs6793455	A	T	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	2617072	2617073	chr3:2617073:G:A	rs62232690	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	2689222	2689223	chr3:2689223:T:C	rs908489	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	2714198	2714199	chr3:2714199:T:A	rs73009806	T	A	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	3034716	3034717	chr3:3034717:C:T	rs6790908	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	3034758	3034759	chr3:3034759:A:G	rs6803232	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr3	3191694	3191695	chr3:3191695:T:A	rs3856853	T	A	T	Sox1.mouse_HMG_2	7	1	-	5.945496826813501	5.087867652438324	TAGAATAAAATTCAG
chr3	3299733	3299734	chr3:3299734:A:G	rs79348494	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	3344231	3344232	chr3:3344232:C:T	rs2133414	C	T	C	Sox1.mouse_HMG_2	14	1	+	2.6428042783942396	3.5174166211169755	GTGATTTCCATTCGC
chr3	3344245	3344246	chr3:3344246:C:T	rs2133415	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	3357625	3357626	chr3:3357626:A:C	rs1396429	A	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	3469938	3469939	chr3:3469939:G:A	rs9837437	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	3740034	3740035	chr3:3740035:G:A	rs6805805	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	3778832	3778833	chr3:3778833:C:T	rs6442831	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	3845162	3845163	chr3:3845163:G:C	rs3749349	G	C	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	4155030	4155031	chr3:4155031:T:A	rs34630700	T	A	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	4351101	4351102	chr3:4351102:T:C	rs11928114	T	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	4351134	4351135	chr3:4351135:G:C	rs7638573	G	C	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	4397196	4397197	chr3:4397197:G:A	rs114048635	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	4398989	4398990	chr3:4398990:C:T	rs17040622	C	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	4497134	4497135	chr3:4497135:G:A	rs304069	G	A	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	4834976	4834977	chr3:4834977:T:G	rs11711879	T	G	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr3	4834987	4834988	chr3:4834988:G:A	rs56092942	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	4847755	4847756	chr3:4847756:G:T	rs9817206	G	T	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	5295441	5295442	chr3:5295442:G:A	rs1391961	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	5295454	5295455	chr3:5295455:C:T	rs343439	C	T	C	Sox1.mouse_HMG_2	8	1	+	9.13009313812761	3.485666447745621	CTGACTGACAGTCAG
chr3	5647713	5647714	chr3:5647714:T:A	rs4685960	T	A	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	5815111	5815112	chr3:5815112:G:A	rs13060106	G	A	G	Sox1.mouse_HMG_2	4	1	-	5.754149023479976	1.3147973221868263	AAGACTTACAGTCAG
chr3	5994902	5994903	chr3:5994903:C:G	rs73009741	C	G	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	5994911	5994912	chr3:5994912:G:A	rs73009743	G	A	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	6210286	6210287	chr3:6210287:C:T	rs34375521	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	6529145	6529146	chr3:6529146:C:G	rs17045278	C	G	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr3	6697827	6697828	chr3:6697828:G:A	rs4263280	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	6747108	6747109	chr3:6747109:A:G	rs345229	A	G	G	Sox1.mouse_HMG_2	10	1	-	3.6072567934412856	-3.2406847848389964	TGGAATTACATTCCC
chr3	7126138	7126139	chr3:7126139:T:C	rs6443089	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	7126139	7126140	chr3:7126140:A:G	rs2173516	A	G	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr3	7303894	7303895	chr3:7303895:A:T	rs56129834	A	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	7456570	7456571	chr3:7456571:A:G	rs779724	A	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	7854804	7854805	chr3:7854805:C:T	rs326417	C	T	t	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	7871376	7871377	chr3:7871377:C:T	rs378324	C	T	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	7875962	7875963	chr3:7875963:C:T	rs447812	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	7875974	7875975	chr3:7875975:A:T	rs185073252	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	8137200	8137201	chr3:8137201:A:G	rs4686218	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	8137201	8137202	chr3:8137202:T:G	rs466700	T	G	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	8218997	8218998	chr3:8218998:G:A	rs6775971	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	8415692	8415693	chr3:8415693:C:T	rs359032	C	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	8417205	8417206	chr3:8417206:A:T	rs77853992	A	T	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	8458939	8458940	chr3:8458940:C:G	rs79854418	C	G	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	8492806	8492807	chr3:8492807:C:G	rs9813104	C	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	8567938	8567939	chr3:8567939:C:T	rs73022330	C	T	C	Sox1.mouse_HMG_2	1	1	-	6.020041849575694	6.32451302865427	CGGAATTGCATTCTG
chr3	8578162	8578163	chr3:8578163:A:G	rs11131135	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.618956464677416	-1.2289851136028658	ATGAATTCAATTCGC
chr3	8673576	8673577	chr3:8673577:G:A	rs62244229	G	A	G	Sox1.mouse_HMG_2	0	1	-	2.8492132953896547	2.583270101620222	CTGGATAACAGTCTG
chr3	8681650	8681651	chr3:8681651:T:C	rs2633863	T	C	-	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	8816276	8816277	chr3:8816277:T:C	rs2241330	T	C	C	Sox1.mouse_HMG_2	5	1	+	3.7598095728741083	-3.148945206441113	CTCAATATCACTCAT
chr3	8900921	8900922	chr3:8900922:G:T	rs373090	G	T	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	8962742	8962743	chr3:8962743:C:T	rs618784	C	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	8988196	8988197	chr3:8988197:C:T	rs182666942	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	8988201	8988202	chr3:8988202:C:G	rs2247387	C	G	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	9034407	9034408	chr3:9034408:A:G	rs146979661	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	9280975	9280976	chr3:9280976:T:G	rs2600191	T	G	-	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	9280976	9280977	chr3:9280977:G:T	rs574663449	G	T	-	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	9394901	9394902	chr3:9394902:G:A	rs62246274	G	A	G	Sox1.mouse_HMG_2	14	1	-	7.685016249695804	8.55962859241854	ATGAATTGCAGTTAC
chr3	9970866	9970867	chr3:9970867:G:A	rs66559400	G	A	A	Sox1.mouse_HMG_2	0	1	+	5.044044772289773	6.048281004924974	GTGACTCCCATTCTG
chr3	9971588	9971589	chr3:9971589:A:G	rs3732968	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.654584711053216	4.77997236833048	CTGAAATGCAGTCAT
chr3	9983708	9983709	chr3:9983709:T:C	rs17050671	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	10235444	10235445	chr3:10235445:C:G	rs11717636	C	G	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr3	10251629	10251630	chr3:10251630:A:C	rs3846105	A	C	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr3	10384535	10384536	chr3:10384536:A:G	rs754206973	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.6446947122302813	-3.2032468660499998	AGGAGTTCCATTCAC
chr3	10392014	10392015	chr3:10392015:C:T	rs56246256	C	T	C	Sox1.mouse_HMG_2	9	1	+	4.712280648361406	4.712280648361406	ATGAATGCCCTTCTC
chr3	10577207	10577208	chr3:10577208:C:T	rs77980156	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.651617580554824	1.0071908901728377	GAGAATCACATTCAC
chr3	10930900	10930901	chr3:10930901:G:T	rs746657	G	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	11625399	11625400	chr3:11625400:G:A	rs2574713	G	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	11703109	11703110	chr3:11703110:C:T	rs6781438	C	T	C	Sox1.mouse_HMG_2	8	1	-	4.213149998309677	5.082187845333286	ATGACTAGGATTCTA
chr3	11921172	11921173	chr3:11921173:T:C	rs2014125	T	C	t	Sox1.mouse_HMG_2	13	1	-	7.455167654719859	2.5090499669472117	GTGAATTACATCCAA
chr3	11924029	11924030	chr3:11924030:A:G	rs13092616	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	12240163	12240164	chr3:12240164:G:T	rs2439737	G	T	T	Sox1.mouse_HMG_2	12	1	-	6.930701771566255	0.030253121099890756	TTGAATAACAGGCAT
chr3	12273346	12273347	chr3:12273347:G:A	rs4279078	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	12467839	12467840	chr3:12467840:T:C	rs767655744	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	12472624	12472625	chr3:12472625:A:G	rs709165	A	G	A	Sox1.mouse_HMG_2	4	1	+	8.607421395616228	1.7860086264561548	ATGAATATCATCCAG
chr3	12517688	12517689	chr3:12517689:G:A	rs17036872	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	12664340	12664341	chr3:12664341:A:T	rs576615048	A	T	A	Sox1.mouse_HMG_2	3	1	+	4.872053042123653	-2.0367017371915668	CTGACTTGCTTTCAG
chr3	12664355	12664356	chr3:12664356:A:G	rs3806661	A	G	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	12664370	12664371	chr3:12664371:G:T	rs560224299	G	T	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	13062765	13062766	chr3:13062766:T:C	rs360757	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	13125417	13125418	chr3:13125418:T:G	rs360738	T	G	G	Sox1.mouse_HMG_2	11	1	+	4.8416390151768915	-2.0671157641383293	TTAAATCACAGTCAT
chr3	13125425	13125426	chr3:13125426:T:A	rs141360868	T	A	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	13214924	13214925	chr3:13214925:T:G	rs17037899	T	G	T	Sox1.mouse_HMG_2	13	1	-	3.791602966753198	-2.529113042376149	GTAAATTCCACTCAT
chr3	13417733	13417734	chr3:13417734:A:G	rs6769612	A	G	A	Sox1.mouse_HMG_2	9	1	+	12.263789388617665	5.355034609302443	TTGAATAGCAGTCAC
chr3	13635439	13635440	chr3:13635440:C:T	rs9838270	C	T	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	13854308	13854309	chr3:13854309:T:C	rs3762721	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	13854319	13854320	chr3:13854320:C:G	rs3762720	C	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr3	13873440	13873441	chr3:13873441:T:G	rs9869134	T	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	14201192	14201193	chr3:14201193:C:T	rs17039107	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	14239369	14239370	chr3:14239370:G:T	rs4685090	G	T	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	14250580	14250581	chr3:14250581:G:A	rs4685095	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	14257127	14257128	chr3:14257128:C:T	rs6442436	C	T	C	Sox1.mouse_HMG_2	14	1	+	4.77997236833048	5.654584711053216	CTGAAGTGCAGTCAC
chr3	14284204	14284205	chr3:14284205:G:A	rs34995806	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.822854507987622	2.150267404319367	TTGACTGACAGTCTT
chr3	14289404	14289405	chr3:14289405:A:G	rs9869724	A	G	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr3	14296784	14296785	chr3:14296785:T:C	rs4684200	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	14495226	14495227	chr3:14495227:G:A	rs116285841	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.841063114079815	5.845299346715017	GTGACTTCCTTTCAG
chr3	14523509	14523510	chr3:14523510:G:A	rs4685173	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	14526119	14526120	chr3:14526120:G:C	rs7613925	G	C	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	14526139	14526140	chr3:14526140:T:C	rs930206576	T	C	T	Sox1.mouse_HMG_2	10	1	+	6.842220938057639	-0.0057206402226420705	CTGAGTAACATTCTT
chr3	14526158	14526159	chr3:14526159:C:T	rs4684230	C	T	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	14635165	14635166	chr3:14635166:A:G	rs73135785	A	G	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	14640479	14640480	chr3:14640480:G:A	rs565474499	G	A	g	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	14885721	14885722	chr3:14885722:A:C	rs55900850	A	C	C	Sox1.mouse_HMG_2	3	1	+	6.514454335222899	-0.39430044409232246	GTGAATGGCATTTTT
chr3	14949366	14949367	chr3:14949367:G:A	rs1021954279	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	15207046	15207047	chr3:15207047:C:T	rs115020034	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	15259193	15259194	chr3:15259194:G:A	rs10510435	G	A	A	Sox1.mouse_HMG_2	14	1	-	8.526021684437199	9.400634027159933	ATGAATAGCAGTTAC
chr3	15373741	15373742	chr3:15373742:G:C	chr3:15373742:G:C	G	C	C	Sox1.mouse_HMG_2	1	1	-	5.1652242961662	4.860753117087627	ACGACTGGCATTCTT
chr3	15515086	15515087	chr3:15515087:T:C	rs75149845	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	15522368	15522369	chr3:15522369:T:G	rs1456085	T	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	15630395	15630396	chr3:15630396:T:C	rs550976504	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	15934002	15934003	chr3:15934003:T:C	rs1392132350	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	16113781	16113782	chr3:16113782:C:T	rs9874701	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	16143828	16143829	chr3:16143829:C:T	rs12492053	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	16143934	16143935	chr3:16143935:T:C	rs10865740	T	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	16290488	16290489	chr3:16290489:G:A	rs148771992	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	16330676	16330677	chr3:16330677:C:G	rs58824769	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	16521498	16521499	chr3:16521499:T:C	rs1529513	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	16738291	16738292	chr3:16738292:T:A	rs4296576	T	A	T	Sox1.mouse_HMG_2	14	1	-	5.081486111692826	6.399195476375512	ATGACTGCCATACAA
chr3	16762592	16762593	chr3:16762593:T:C	rs7633264	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	16801536	16801537	chr3:16801537:A:G	rs10510465	A	G	G	Sox1.mouse_HMG_2	9	1	+	3.779488977477968	-3.1292658018372514	GGAAATACCAGTCAT
chr3	17022897	17022898	chr3:17022898:G:T	rs79233455	G	T	G	Sox1.mouse_HMG_2	7	1	+	3.6834414976502328	3.526867142816132	ATCTATTGCATTCAT
chr3	17032770	17032771	chr3:17032771:T:A	rs11128814	T	A	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	17032788	17032789	chr3:17032789:G:C	rs17272789	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	17045765	17045766	chr3:17045766:G:A	rs375833873	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	17057268	17057269	chr3:17057269:C:G	rs57955299	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	17076921	17076922	chr3:17076922:A:C	rs76916915	A	C	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	17120075	17120076	chr3:17120076:A:G	rs6442668	A	G	g	Sox1.mouse_HMG_2	11	1	-	3.2456227292198703	-3.66313205009535	CTGAACAGAATTCAG
chr3	17161281	17161282	chr3:17161282:G:A	rs73819650	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr3	17193997	17193998	chr3:17193998:G:A	rs2596656	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	17196059	17196060	chr3:17196060:T:A	rs1030897450	T	A	T	Sox1.mouse_HMG_2	14	1	+	3.855570726673269	2.5378613619905828	CTCAACAGCATTCAT
chr3	17707684	17707685	chr3:17707685:C:T	rs4566567	C	T	T	Sox1.mouse_HMG_2	2	1	+	5.22285127566823	3.7187738788919553	GTCAATGCCAGTCAA
chr3	17833701	17833702	chr3:17833702:G:C	rs1004307	G	C	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	17915619	17915620	chr3:17915620:T:G	rs35596310	T	G	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	18075891	18075892	chr3:18075892:A:G	rs17201070	A	G	A	Sox1.mouse_HMG_2	11	1	-	6.151978195265194	-0.7567765840500267	ATAACTAACATTCTG
chr3	18269234	18269235	chr3:18269235:A:G	rs56330430	A	G	A	Sox1.mouse_HMG_2	6	1	-	2.9293915676217273	-0.5820180003252441	ATGACATCCATTCTC
chr3	18295391	18295392	chr3:18295392:A:C	rs947428275	A	C	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	18449864	18449865	chr3:18449865:C:G	rs146807496	C	G	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	18449874	18449875	chr3:18449875:A:G	rs57058896	A	G	A	Sox1.mouse_HMG_2	5	1	-	5.020104895189311	-1.888649884125909	AAGAATTGCATTCCT
chr3	18556354	18556355	chr3:18556355:A:G	rs116276337	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	19146536	19146537	chr3:19146537:T:A	rs79684157	T	A	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	20073751	20073752	chr3:20073752:T:C	rs17006525	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	20669126	20669127	chr3:20669127:T:C	rs1566478	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.7967059176190694	-0.8472863898741644	ATGATGAACATTCAT
chr3	20736675	20736676	chr3:20736676:C:T	rs57957027	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	20810820	20810821	chr3:20810821:A:G	rs76313132	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	20999844	20999845	chr3:20999845:T:G	rs67570653	T	G	T	Sox1.mouse_HMG_2	1	1	+	11.12798206562203	6.179518579050221	TTGAATGCCAGTCAC
chr3	21438747	21438748	chr3:21438748:G:A	rs4501133	G	A	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	21501100	21501101	chr3:21501101:A:G	rs233169	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	21661381	21661382	chr3:21661382:A:G	rs1320290	A	G	a	Sox1.mouse_HMG_2	1	1	-	4.2188690338112345	-0.4251232736819986	ATGAAAACAATTCAG
chr3	21746160	21746161	chr3:21746161:A:T	rs13078866	A	T	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	21752147	21752148	chr3:21752148:G:A	rs62236196	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	21826558	21826559	chr3:21826559:A:C	rs2670256	A	C	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	21879135	21879136	chr3:21879136:A:T	rs259550	A	T	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	21912586	21912587	chr3:21912587:A:T	rs1479970	A	T	A	Sox1.mouse_HMG_2	5	1	-	5.150508816188656	-1.7582459631265641	CTGACTTGCATGCAC
chr3	22007356	22007357	chr3:22007357:G:A	rs1694020	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	22142096	22142097	chr3:22142097:G:A	rs7629007	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr3	22159547	22159548	chr3:22159548:G:C	rs141551913	G	C	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	22399769	22399770	chr3:22399770:C:T	rs1121249	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	22676324	22676325	chr3:22676325:C:T	rs34749991	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.524163039559082	5.225217859100157	CTAAATGGCATTTAC
chr3	23122257	23122258	chr3:23122258:T:C	rs4634143	T	C	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr3	23144353	23144354	chr3:23144354:T:G	rs138614507	T	G	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	23391605	23391606	chr3:23391606:C:A	rs778485	C	A	A	Sox1.mouse_HMG_2	8	1	+	10.887397381549011	6.037900566036913	ATAAATTACATTCAG
chr3	23481317	23481318	chr3:23481318:A:C	rs1692647	A	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	23616538	23616539	chr3:23616539:T:G	rs6773562	T	G	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	23727029	23727030	chr3:23727030:A:G	rs72625868	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	23949805	23949806	chr3:23949806:C:A	rs73036780	C	A	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	24127821	24127822	chr3:24127822:A:T	rs2278802	A	T	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr3	24226214	24226215	chr3:24226215:T:A	rs851718	T	A	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	24707014	24707015	chr3:24707015:G:A	rs4585139	G	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	24867891	24867892	chr3:24867892:C:T	rs145891807	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	24892709	24892710	chr3:24892710:A:T	rs13095194	A	T	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	24972747	24972748	chr3:24972748:T:C	rs9847103	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr3	24995011	24995012	chr3:24995012:C:T	rs115342535	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	25143989	25143990	chr3:25143990:A:G	rs35183943	A	G	A	Sox1.mouse_HMG_2	9	1	-	9.760489512403966	9.760489512403966	ATGAATATCTTTCAT
chr3	25283797	25283798	chr3:25283798:T:C	rs7430212	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	25291712	25291713	chr3:25291713:A:G	rs80344539	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr3	25291747	25291748	chr3:25291748:C:T	rs79389677	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	25371726	25371727	chr3:25371727:A:G	rs752152	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	25523250	25523251	chr3:25523251:C:G	rs76654177	C	G	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	25525588	25525589	chr3:25525589:G:A	rs1286756	G	A	A	Sox1.mouse_HMG_2	12	1	-	4.550837439394605	-0.12174966427364964	CTGACTTTCATCCAA
chr3	25556440	25556441	chr3:25556441:C:T	rs140817964	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	25680279	25680280	chr3:25680280:A:G	rs73055815	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	25724902	25724903	chr3:25724903:T:C	rs1873100	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	25845954	25845955	chr3:25845955:C:T	rs75284691	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	25895683	25895684	chr3:25895684:T:C	rs2968172	T	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	26062084	26062085	chr3:26062085:A:G	rs13063917	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	26105347	26105348	chr3:26105348:T:C	rs6551046	T	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	26657365	26657366	chr3:26657366:A:C	rs11720649	A	C	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	26708208	26708209	chr3:26708209:T:G	rs12054097	T	G	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	27011194	27011195	chr3:27011195:A:C	rs6784187	A	C	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr3	27043384	27043385	chr3:27043385:G:A	rs9826549	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	27194448	27194449	chr3:27194449:C:A	rs11928916	C	A	A	Sox1.mouse_HMG_2	12	1	+	4.034450079426832	-2.865998571039532	CTGAATCAGAGTCAT
chr3	27350054	27350055	chr3:27350055:T:C	rs4973764	T	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	27423748	27423749	chr3:27423749:G:A	rs140295984	G	A	g	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	27521701	27521702	chr3:27521702:T:C	rs73822361	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	27597844	27597845	chr3:27597845:C:A	rs13315604	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	27881924	27881925	chr3:27881925:C:T	rs6805319	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	27935372	27935373	chr3:27935373:A:G	rs7639905	A	G	A	Sox1.mouse_HMG_2	14	1	+	5.686251411136542	5.85089265903149	CAGAATCTCATTCAA
chr3	28301842	28301843	chr3:28301843:A:G	rs7641491	A	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	29026444	29026445	chr3:29026445:G:C	rs71319067	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	29311264	29311265	chr3:29311265:A:G	rs17722069	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	29333371	29333372	chr3:29333372:T:C	rs7641785	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	29333415	29333416	chr3:29333416:C:G	rs62241718	C	G	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	29401994	29401995	chr3:29401995:T:C	rs6549937	T	C	t	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	29430811	29430812	chr3:29430812:G:A	rs2053281	G	A	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	29514484	29514485	chr3:29514485:C:A	rs9813185	C	A	C	Sox1.mouse_HMG_2	0	1	-	5.975066860298768	6.044483693446179	GTAAATCCCATTCAG
chr3	29514490	29514491	chr3:29514491:C:T	rs9813186	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	30346991	30346992	chr3:30346992:C:A	rs7624205	C	A	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	30453598	30453599	chr3:30453599:C:T	rs921566260	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr3	30470782	30470783	chr3:30470783:A:G	rs72847443	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	30511318	30511319	chr3:30511319:C:T	rs7625124	C	T	C	Sox1.mouse_HMG_2	7	1	+	6.847419230270925	6.38647477656382	GAGAATGCCATTCTT
chr3	30511619	30511620	chr3:30511620:C:T	rs143995594	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	30649165	30649166	chr3:30649166:G:T	rs3773624	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	30770096	30770097	chr3:30770097:A:G	rs2062775	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	30890038	30890039	chr3:30890039:C:G	rs9822397	C	G	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	31008939	31008940	chr3:31008940:A:G	rs62235165	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	31055857	31055858	chr3:31055858:C:T	chr3:31055858:C:T	C	T	C	Sox1.mouse_HMG_2	6	1	-	5.313204849637426	6.753382271506068	CTGACTGACAATCAC
chr3	31164943	31164944	chr3:31164944:G:A	rs1613686	G	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	31166938	31166939	chr3:31166939:C:G	rs76796266	C	G	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr3	31226580	31226581	chr3:31226581:G:A	rs77024384	G	A	G	Sox1.mouse_HMG_2	3	1	-	3.294552882404635	3.294552882404635	CAGCATATCATTCAG
chr3	31246964	31246965	chr3:31246965:T:C	rs72858279	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.691011529324156	-0.9529807781690768	TTGCCTATCAGTCAT
chr3	31345656	31345657	chr3:31345657:G:A	rs6776416	G	A	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	31499807	31499808	chr3:31499808:G:A	rs12485487	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	31610892	31610893	chr3:31610893:C:A	rs187285766	C	A	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr3	31802128	31802129	chr3:31802129:C:T	rs149757216	C	T	c	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	31802179	31802180	chr3:31802180:C:G	rs114903825	C	G	c	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	31917311	31917312	chr3:31917312:A:G	rs1275603292	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	32035148	32035149	chr3:32035149:T:A	rs4955127	T	A	T	Sox1.mouse_HMG_2	0	1	-	5.104526148369492	4.169706748881701	ATGAAGTACATTTAT
chr3	32392741	32392742	chr3:32392742:G:A	rs59840034	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	32392763	32392764	chr3:32392764:G:A	rs75777134	G	A	G	Sox1.mouse_HMG_2	6	1	-	8.07376707755312	11.58517664550009	GTGACTCCCATTCAA
chr3	32392786	32392787	chr3:32392787:G:A	rs71323082	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	32455054	32455055	chr3:32455055:G:A	rs3882310	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr3	32602508	32602509	chr3:32602509:T:C	rs17029747	T	C	C	Sox1.mouse_HMG_2	10	1	+	2.526504385032559	-4.321437193247721	CCGACTACCATGCAT
chr3	32871354	32871355	chr3:32871355:C:A	rs145951588	C	A	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	33001680	33001681	chr3:33001681:C:T	rs56744150	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	33001710	33001711	chr3:33001711:C:A	rs9310999	C	A	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	33932679	33932680	chr3:33932680:T:C	rs11916425	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	34178518	34178519	chr3:34178519:A:G	rs17201529	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	34227683	34227684	chr3:34227684:A:G	rs34082876	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	34410216	34410217	chr3:34410217:C:T	rs72854299	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	34668920	34668921	chr3:34668921:C:G	rs12636214	C	G	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	34864351	34864352	chr3:34864352:G:T	rs62251619	G	T	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	34864360	34864361	chr3:34864361:G:A	rs62251620	G	A	G	Sox1.mouse_HMG_2	14	1	-	5.986672595696106	6.861284938418843	GTGTATAACAGTCAC
chr3	35225027	35225028	chr3:35225028:A:T	rs191610761	A	T	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	35393967	35393968	chr3:35393968:A:G	rs814487	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	35492085	35492086	chr3:35492086:C:T	rs870776	C	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	35644833	35644834	chr3:35644834:A:G	rs34041533	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	35785712	35785713	chr3:35785713:T:G	rs78386527	T	G	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	36121944	36121945	chr3:36121945:T:C	rs144962571	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr3	36163510	36163511	chr3:36163511:C:T	rs35082872	C	T	C	Sox1.mouse_HMG_2	12	1	+	7.110052335452044	2.437465231783789	TTGAATTTCCTTCAC
chr3	36482713	36482714	chr3:36482714:C:T	rs1456074	C	T	T	Sox1.mouse_HMG_2	2	1	-	6.543384078500412	1.8979815454841964	GTGAATTCCATTTTC
chr3	36531311	36531312	chr3:36531312:A:G	rs4482623	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	36561058	36561059	chr3:36561059:T:C	rs4678537	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	36738950	36738951	chr3:36738951:G:A	rs114671411	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	37213192	37213193	chr3:37213193:T:G	rs116061855	T	G	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	37444255	37444256	chr3:37444256:C:T	rs9814320	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	37812198	37812199	chr3:37812199:T:C	rs114834742	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	37985785	37985786	chr3:37985786:C:T	rs11711503	C	T	C	Sox1.mouse_HMG_2	4	1	+	3.2197497432478315	-1.2196019580453201	CTGACGAACATTCTG
chr3	38146502	38146503	chr3:38146503:T:C	rs172111	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	38228145	38228146	chr3:38228146:C:A	rs115498028	C	A	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	38279398	38279399	chr3:38279399:C:T	rs75856267	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	38355051	38355052	chr3:38355052:T:C	rs820296	T	C	C	Sox1.mouse_HMG_2	7	1	-	8.110194686333328	7.40913986679225	AGGAATTACAGTCAC
chr3	38489719	38489720	chr3:38489720:T:G	rs7374458	T	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	38642798	38642799	chr3:38642799:C:T	rs80172327	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	38716374	38716375	chr3:38716375:T:C	rs6803189	T	C	C	Sox1.mouse_HMG_2	1	1	+	3.895347791608232	-0.7486445158850018	GTGAATAAGTTTCAT
chr3	39343568	39343569	chr3:39343569:T:C	rs117653960	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	39413823	39413824	chr3:39413824:G:A	rs12638378	G	A	G	Sox1.mouse_HMG_2	0	1	-	13.70342575315661	13.437482559387176	CTGAATGCCATTCAA
chr3	39814251	39814252	chr3:39814252:A:C	chr3:39814252:A:C	A	C	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	40238343	40238344	chr3:40238344:G:C	rs73827175	G	C	g	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	40366878	40366879	chr3:40366879:A:G	rs147125880	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	40398624	40398625	chr3:40398625:G:A	rs9864423	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	41052083	41052084	chr3:41052084:A:G	rs408499	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	41053451	41053452	chr3:41053452:A:G	rs398137	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	41201185	41201186	chr3:41201186:C:T	rs77753231	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	41303393	41303394	chr3:41303394:A:G	rs10049199	A	G	A	Sox1.mouse_HMG_2	13	1	-	7.087883613987718	3.9615311580166632	ATGAATACCACTCTT
chr3	41303489	41303490	chr3:41303490:C:T	rs10049489	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	41328962	41328963	chr3:41328963:C:T	rs9814012	C	T	c	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	41328996	41328997	chr3:41328997:A:G	rs10212411	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	41411194	41411195	chr3:41411195:A:C	rs34196069	A	C	C	Sox1.mouse_HMG_2	1	1	-	9.068365849323332	4.1199023627515245	ATGAAGACCATTCAG
chr3	41502054	41502055	chr3:41502055:C:T	rs2643979	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.449411052196967	-0.19599148081924828	TGGAATACTATTCAG
chr3	41502627	41502628	chr3:41502628:T:C	rs1795322	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	41565078	41565079	chr3:41565079:C:T	rs60094379	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	41711873	41711874	chr3:41711874:A:G	rs62258606	A	G	A	Sox1.mouse_HMG_2	13	1	-	6.02283418031758	2.896481724346525	GTGAATACCATGCTT
chr3	41769456	41769457	chr3:41769457:A:T	rs17280980	A	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	42024662	42024663	chr3:42024663:A:T	rs9814199	A	T	A	Sox1.mouse_HMG_2	11	1	-	3.6504407339387757	-3.2583140453764448	TTCAATAGCAATCAT
chr3	42119268	42119269	chr3:42119269:G:C	rs4973902	G	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	42129896	42129897	chr3:42129897:T:C	rs13071805	T	C	C	Sox1.mouse_HMG_2	4	1	-	12.633875303819499	5.812462534659427	ATGAATTTCATTCTT
chr3	42165365	42165366	chr3:42165366:A:T	rs77899155	A	T	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	42185284	42185285	chr3:42185285:T:C	rs9311306	T	C	C	Sox1.mouse_HMG_2	1	1	+	9.788161162903874	5.14416885541064	GTGACTCACATTCAT
chr3	42670663	42670664	chr3:42670664:T:C	rs339714	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr3	43010878	43010879	chr3:43010879:T:C	chr3:43010879:T:C	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	43031492	43031493	chr3:43031493:C:T	rs531888	C	T	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	44182903	44182904	chr3:44182904:C:T	rs4682940	C	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	44344905	44344906	chr3:44344906:A:G	rs73090412	A	G	-	Sox1.mouse_HMG_2	9	1	+	5.6166106658782535	-1.2921441134369653	AGGAATTCAATTCAC
chr3	45018118	45018119	chr3:45018119:A:G	rs2372862	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	45045171	45045172	chr3:45045172:T:C	rs112073619	T	C	T	Sox1.mouse_HMG_2	13	1	-	6.3220326226129515	1.3759149348403035	CTGAATAACAGGCAC
chr3	45085461	45085462	chr3:45085462:A:G	rs116108440	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	45200107	45200108	chr3:45200108:A:C	rs887744	A	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	45200114	45200115	chr3:45200115:A:G	rs7647073	A	G	A	Sox1.mouse_HMG_2	14	1	-	8.445609131881886	7.57099678915915	TTGAAGTCCATTCAT
chr3	45200129	45200130	chr3:45200130:C:G	rs245214	C	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	45200136	45200137	chr3:45200137:A:G	rs245213	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	45263414	45263415	chr3:45263415:C:G	rs33799	C	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	45329408	45329409	chr3:45329409:G:C	rs62242417	G	C	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	45599427	45599428	chr3:45599428:T:C	rs2062131	T	C	T	Sox1.mouse_HMG_2	8	1	-	4.894009528544305	4.024971681520696	ATGAATAAAATACAC
chr3	45691022	45691023	chr3:45691023:T:G	rs2742421	T	G	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	45915936	45915937	chr3:45915937:C:T	rs9840179	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	45959931	45959932	chr3:45959932:C:T	rs77333392	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	46050595	46050596	chr3:46050596:A:T	rs78396475	A	T	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	46451937	46451938	chr3:46451938:C:T	rs6766188	C	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr3	46627363	46627364	chr3:46627364:C:T	rs9820361	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.6755816486782003	-1.9688450417037848	AGGAAATACATTCAG
chr3	46627386	46627387	chr3:46627387:C:G	rs9820372	C	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr3	46732019	46732020	chr3:46732020:G:T	rs59637204	G	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	46911286	46911287	chr3:46911287:T:C	rs12715420	T	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	46948237	46948238	chr3:46948238:G:A	rs1189074956	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr3	46948266	46948267	chr3:46948267:T:G	rs17079331	T	G	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	47283728	47283729	chr3:47283729:A:G	rs187850544	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	47617996	47617997	chr3:47617997:C:T	rs1403578	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	48918316	48918317	chr3:48918317:A:G	rs200099375	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	49608529	49608530	chr3:49608530:T:C	rs868487975	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	49608566	49608567	chr3:49608567:C:T	rs112843883	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	49627333	49627334	chr3:49627334:A:G	rs9837341	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr3	50016080	50016081	chr3:50016081:C:G	rs57575459	C	G	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	50164797	50164798	chr3:50164798:T:C	rs2624839	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr3	50296195	50296196	chr3:50296196:T:C	rs3774753	T	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	50660723	50660724	chr3:50660724:C:T	rs12492982	C	T	C	Sox1.mouse_HMG_2	8	1	+	10.72428704319374	5.079860352811752	AGGAATAGCATTCAG
chr3	51113602	51113603	chr3:51113603:C:A	rs7640263	C	A	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	52346974	52346975	chr3:52346975:C:T	rs11716017	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	52527424	52527425	chr3:52527425:G:C	rs59410274	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	52600506	52600507	chr3:52600507:G:C	rs58409398	G	C	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	52845266	52845267	chr3:52845267:G:T	rs572825957	G	T	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr3	52873930	52873931	chr3:52873931:C:T	rs59094265	C	T	T	Sox1.mouse_HMG_2	12	1	+	9.562066005723297	4.889478902055042	AGGAATTTCATTCAA
chr3	53027610	53027611	chr3:53027611:T:G	rs77526543	T	G	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	53321071	53321072	chr3:53321072:G:C	rs12491594	G	C	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	53478522	53478523	chr3:53478523:G:A	rs611914	G	A	G	Sox1.mouse_HMG_2	7	1	+	2.819602160092174	3.520656979633249	GGGAATAGCATTAAG
chr3	53628942	53628943	chr3:53628943:G:A	rs7630968	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	53634680	53634681	chr3:53634681:A:G	rs11707976	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	53696707	53696708	chr3:53696708:G:A	rs9841978	G	A	G	Sox1.mouse_HMG_2	14	1	-	3.192947675435349	4.067560018158085	CAGAATTCCATCCAC
chr3	53768720	53768721	chr3:53768721:A:G	rs3774581	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	54044804	54044805	chr3:54044805:T:A	rs35734208	T	A	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	54356666	54356667	chr3:54356667:G:A	rs191420344	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	54366290	54366291	chr3:54366291:C:A	rs115396502	C	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	54374517	54374518	chr3:54374518:A:T	rs563924883	A	T	A	Sox1.mouse_HMG_2	6	1	-	7.0584829340517885	7.899488368793183	GTGAAGTCCATTCAA
chr3	54481692	54481693	chr3:54481693:A:G	rs7373217	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	54863667	54863668	chr3:54863668:T:A	rs187998204	T	A	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	54928225	54928226	chr3:54928226:G:A	rs75510138	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	55081644	55081645	chr3:55081645:A:T	rs4955929	A	T	A	Sox1.mouse_HMG_2	3	1	+	4.795034772478912	-2.113720006836308	AGCAATTCCATTCAG
chr3	55145278	55145279	chr3:55145279:C:T	rs56070844	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	55161804	55161805	chr3:55161805:G:A	rs755066	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	55272424	55272425	chr3:55272425:A:G	rs460001	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.223783541326618	-0.42020876616661595	GTGACTTTCATTAAA
chr3	55296352	55296353	chr3:55296353:A:G	rs58093156	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	55331264	55331265	chr3:55331265:G:A	rs9834227	G	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	55529315	55529316	chr3:55529316:T:C	rs1875110	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	55585082	55585083	chr3:55585083:G:A	rs11922207	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	55651215	55651216	chr3:55651216:C:G	rs551605228	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	55718630	55718631	chr3:55718631:C:T	rs34423651	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr3	55790839	55790840	chr3:55790840:G:T	rs62249348	G	T	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	56111686	56111687	chr3:56111687:T:G	chr3:56111687:T:G	T	G	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	56257668	56257669	chr3:56257669:T:G	rs34392996	T	G	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr3	56278111	56278112	chr3:56278112:C:G	rs2167618	C	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	56468587	56468588	chr3:56468588:C:T	rs562867712	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	56468589	56468590	chr3:56468590:C:T	rs141118348	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	56556040	56556041	chr3:56556041:A:G	rs9834064	A	G	A	Sox1.mouse_HMG_2	14	1	+	4.2847698043020195	4.449411052196967	TGGAATACTATTCAA
chr3	56557458	56557459	chr3:56557459:A:G	rs373566721	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	56557479	56557480	chr3:56557480:C:A	rs73079894	C	A	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	56557492	56557493	chr3:56557493:C:G	rs75127739	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	56629523	56629524	chr3:56629524:A:G	rs4681937	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	56984149	56984150	chr3:56984150:A:C	rs6809587	A	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	57175168	57175169	chr3:57175169:T:G	rs6445860	T	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	57438608	57438609	chr3:57438609:A:G	rs9878353	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	57755709	57755710	chr3:57755710:T:C	rs367744191	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	58117095	58117096	chr3:58117096:C:G	rs77549946	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	58222221	58222222	chr3:58222222:C:T	rs17059047	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	58293401	58293402	chr3:58293402:A:G	rs79421802	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	58298780	58298781	chr3:58298781:T:C	rs62259315	T	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	58423335	58423336	chr3:58423336:T:C	rs12631656	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	58562451	58562452	chr3:58562452:C:G	chr3:58562452:C:G	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	58568595	58568596	chr3:58568596:C:T	rs34277058	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	58708023	58708024	chr3:58708024:T:C	rs868110123	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	58830327	58830328	chr3:58830328:C:T	rs73837971	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr3	59304504	59304505	chr3:59304505:G:A	rs541326232	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	59304511	59304512	chr3:59304512:T:C	rs11928900	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	59334876	59334877	chr3:59334877:A:G	rs115220787	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.024515736312651	0.11576095699743061	ATGAATTACAGGCAT
chr3	59364824	59364825	chr3:59364825:G:A	rs59800662	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	59422250	59422251	chr3:59422251:G:C	rs9822284	G	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr3	59775528	59775529	chr3:59775529:T:A	rs493783	T	A	A	Sox1.mouse_HMG_2	9	1	-	9.163400442651819	2.254645663336599	ATGATTTGCATTCAT
chr3	59818670	59818671	chr3:59818671:G:C	rs181859207	G	C	G	Sox1.mouse_HMG_2	14	1	-	4.477976780621838	4.199521006556836	ATGAATCCCAGTTAC
chr3	59878740	59878741	chr3:59878741:T:C	rs9311733	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	60060074	60060075	chr3:60060075:T:C	rs7638558	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	60179100	60179101	chr3:60179101:G:A	rs12492663	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	60190044	60190045	chr3:60190045:T:C	rs150484099	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr3	60266566	60266567	chr3:60266567:T:A	rs75326416	T	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	60283999	60284000	chr3:60284000:A:G	rs17062684	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	60298584	60298585	chr3:60298585:T:C	rs2088310	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr3	60339720	60339721	chr3:60339721:C:T	rs114580307	C	T	C	Sox1.mouse_HMG_2	0	1	-	4.300098434272043	5.304334666907246	GTTAATTTCAGTCAC
chr3	60445630	60445631	chr3:60445631:G:C	rs562808456	G	C	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	60580101	60580102	chr3:60580102:A:G	rs72887608	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	60622504	60622505	chr3:60622505:T:C	rs72889659	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.493088575241035	-3.328324193919036	GTGGATACAATTCAC
chr3	60936073	60936074	chr3:60936074:T:C	rs78693890	T	C	T	Sox1.mouse_HMG_2	3	1	-	5.8610607975557905	-1.04769398175943	TTGACTGACTTTCAT
chr3	61158753	61158754	chr3:61158754:T:C	rs17064527	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.602785128503491	-0.3433325592691573	CTAAAAAGCATTCAT
chr3	61160589	61160590	chr3:61160590:C:T	rs9827045	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	61222527	61222528	chr3:61222528:G:A	rs17064660	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	61287867	61287868	chr3:61287868:C:T	rs1349798	C	T	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	61287889	61287890	chr3:61287890:T:C	rs1349799	T	C	C	Sox1.mouse_HMG_2	4	1	-	4.1884081469598025	-2.63300462220027	AGGAATTGCACTCAT
chr3	61467494	61467495	chr3:61467495:G:A	rs12152314	G	A	G	Sox1.mouse_HMG_2	14	1	+	6.47174107614301	6.307099828248062	TTGAATTGCAGTTAG
chr3	61709253	61709254	chr3:61709254:A:G	rs73099140	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	61803234	61803235	chr3:61803235:G:A	rs67626913	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	61808754	61808755	chr3:61808755:A:G	rs1287239188	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	62101705	62101706	chr3:62101706:T:G	rs4688284	T	G	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	62333372	62333373	chr3:62333373:A:G	rs114729571	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	62638517	62638518	chr3:62638518:C:A	rs61000568	C	A	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	62721919	62721920	chr3:62721920:C:T	rs550025	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	63009872	63009873	chr3:63009873:G:C	rs2367592	G	C	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	63086486	63086487	chr3:63086487:A:G	rs2121673	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.3191837614185142	-3.589571017896706	CTGATTACCATTCCT
chr3	63089590	63089591	chr3:63089591:C:T	rs1374679	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	63128121	63128122	chr3:63128122:T:C	rs79278930	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	63303580	63303581	chr3:63303581:T:C	rs11130921	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	63321063	63321064	chr3:63321064:T:A	rs7647850	T	A	G	Sox1.mouse_HMG_2	7	1	+	5.125948537377034	5.98357771175221	ATGGATGTCATTCTT
chr3	63654448	63654449	chr3:63654449:G:C	rs34924002	G	C	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	63757253	63757254	chr3:63757254:T:G	rs9859021	T	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	63908179	63908180	chr3:63908180:A:T	chr3:63908180:A:T	A	T	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	64011731	64011732	chr3:64011732:A:G	rs552134135	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	64162124	64162125	chr3:64162125:C:T	rs59443691	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	64242803	64242804	chr3:64242804:T:G	chr3:64242804:T:G	T	G	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	64319013	64319014	chr3:64319014:A:G	rs58042464	A	G	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	64382477	64382478	chr3:64382478:C:T	rs73113912	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	64384548	64384549	chr3:64384549:A:T	rs13062075	A	T	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	64411668	64411669	chr3:64411669:C:T	rs920780	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	64587262	64587263	chr3:64587263:C:T	rs75808062	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.931193748876983	5.632248568418059	GTGATTAGCATTCTC
chr3	64595683	64595684	chr3:64595684:G:A	rs60073432	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	64597074	64597075	chr3:64597075:A:G	rs75012446	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	64646024	64646025	chr3:64646025:A:C	rs9866907	A	C	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	64903262	64903263	chr3:64903263:G:A	rs1612708	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	64976945	64976946	chr3:64976946:T:C	rs1878633	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	65082472	65082473	chr3:65082473:C:T	rs1482596	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	65172625	65172626	chr3:65172626:A:G	rs9874248	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	65172627	65172628	chr3:65172628:G:C	rs9836880	G	C	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	65229716	65229717	chr3:65229717:A:T	rs704461	A	T	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	65269051	65269052	chr3:65269052:A:G	rs12639584	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr3	65535648	65535649	chr3:65535649:A:G	rs17073070	A	G	A	Sox1.mouse_HMG_2	4	1	+	8.675314925155524	1.853902155995451	ATCAATGGCATTCAA
chr3	65585024	65585025	chr3:65585025:C:G	rs7653877	C	G	G	Sox1.mouse_HMG_2	14	1	+	4.27964931524861	4.001193541183608	AGAACTACCATTCAC
chr3	65627310	65627311	chr3:65627311:C:T	rs60581715	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	65650809	65650810	chr3:65650810:A:G	rs7633294	A	G	G	Sox1.mouse_HMG_2	14	1	-	4.958935927543096	4.08432358482036	TTTAATTGCATTCTT
chr3	65732553	65732554	chr3:65732554:A:G	rs13092999	A	G	a	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	65867845	65867846	chr3:65867846:C:A	rs4508817	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	66000623	66000624	chr3:66000624:A:G	rs115979085	A	G	A	Sox1.mouse_HMG_2	0	1	-	4.338151080051472	4.6040942738209045	TGGAATACCTTTCAT
chr3	66010434	66010435	chr3:66010435:T:C	rs4417899	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.2441803619277865	-2.5772324072322865	GTGAATATCATGCTA
chr3	66011351	66011352	chr3:66011352:C:G	rs17074297	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	66014862	66014863	chr3:66014863:C:G	rs75377498	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	66016202	66016203	chr3:66016203:C:T	rs73833344	C	T	T	Sox1.mouse_HMG_2	12	1	+	6.889183175110951	2.2165960714426958	ATAACTATCAGTCAT
chr3	66208460	66208461	chr3:66208461:C:G	rs922255970	C	G	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	66497995	66497996	chr3:66497996:C:T	rs73836309	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	66797983	66797984	chr3:66797984:T:C	rs58161562	T	C	T	Sox1.mouse_HMG_2	13	1	-	7.279916453604372	2.333798765831723	TTGAATTAGAGTCAT
chr3	66890298	66890299	chr3:66890299:T:C	rs17045469	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	66985565	66985566	chr3:66985566:T:G	rs1164202314	T	G	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	67212813	67212814	chr3:67212814:G:A	rs4128751	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	67383394	67383395	chr3:67383395:T:G	rs75660469	T	G	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	67496339	67496340	chr3:67496340:T:C	rs73088934	T	C	T	Sox1.mouse_HMG_2	5	1	+	13.491504478194676	6.5827496988794545	ATGAATTACATTCTT
chr3	67504517	67504518	chr3:67504518:G:A	rs9872341	G	A	A	Sox1.mouse_HMG_2	7	1	-	7.836939982928581	7.375995529221477	CTGAAATCCATTCAC
chr3	67516829	67516830	chr3:67516830:A:G	rs4334654	A	G	G	Sox1.mouse_HMG_2	9	1	+	1.824653638144318	-5.084101141170902	CTGACTGCCAGACAG
chr3	67602455	67602456	chr3:67602456:G:A	rs7625023	G	A	T	Sox1.mouse_HMG_2	8	1	-	5.265939291481624	-0.3784873989003637	CTGAATACCACTCTG
chr3	67643055	67643056	chr3:67643056:G:C	rs6798228	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	68744586	68744587	chr3:68744587:T:C	rs9682904	T	C	C	Sox1.mouse_HMG_2	11	1	+	7.738115145155845	0.8293603658406252	ATAAATTCCAGTCAG
chr3	68754316	68754317	chr3:68754317:T:C	rs4855505	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.72862676255064	-2.1801280167645793	ATGCATTGCATTCTG
chr3	68986956	68986957	chr3:68986957:T:G	rs6804484	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	68992383	68992384	chr3:68992384:G:A	rs12495686	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	69103441	69103442	chr3:69103442:C:G	rs7650936	C	G	G	Sox1.mouse_HMG_2	4	1	+	5.377698449948205	0.938346748655053	GTGACAAGCATTCAG
chr3	69255961	69255962	chr3:69255962:T:C	rs9310143	T	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr3	69489896	69489897	chr3:69489897:T:C	rs1587371	T	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	69521476	69521477	chr3:69521477:G:T	rs11915976	G	T	G	Sox1.mouse_HMG_2	7	1	+	4.4441265726959465	4.287552217861846	ACTAATTGCATTCAT
chr3	69629281	69629282	chr3:69629282:T:C	rs12486558	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	69647869	69647870	chr3:69647870:A:T	rs11128136	A	T	A	Sox1.mouse_HMG_2	11	1	-	6.05679155525638	-0.8519632240588395	ATGAATAATATTTAG
chr3	69867793	69867794	chr3:69867794:C:T	rs76437415	C	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	69986716	69986717	chr3:69986717:A:G	rs9840590	A	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	70251057	70251058	chr3:70251058:G:C	rs9814331	G	C	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	70557066	70557067	chr3:70557067:A:G	rs115469594	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	70703431	70703432	chr3:70703432:G:A	rs78194521	G	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	70754923	70754924	chr3:70754924:T:C	rs34766731	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	71102067	71102068	chr3:71102068:C:T	rs831436	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	71220314	71220315	chr3:71220315:C:T	rs6549384	C	T	T	Sox1.mouse_HMG_2	6	1	-	5.635200850262522	7.075378272131163	AGAAATGTCATTCAT
chr3	71247426	71247427	chr3:71247427:G:C	rs11712599	G	C	G	Sox1.mouse_HMG_2	6	1	+	3.172222980801122	0.2599853999813947	CGGAATGCCATTGAT
chr3	71247427	71247428	chr3:71247428:C:T	rs11720738	C	T	C	Sox1.mouse_HMG_2	7	1	+	3.172222980801122	2.711278527094016	CGGAATGCCATTGAT
chr3	71694459	71694460	chr3:71694460:A:G	rs572355575	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	71701509	71701510	chr3:71701510:C:G	rs9790291	C	G	G	Sox1.mouse_HMG_2	3	1	-	8.912827634602865	8.912827634602865	GTGGATAGCATTCAT
chr3	71711723	71711724	chr3:71711724:C:T	rs2029011	C	T	C	Sox1.mouse_HMG_2	3	1	-	6.08969633682486	12.99845111614008	TTGGATTACAGTCAT
chr3	71797679	71797680	chr3:71797680:G:A	rs2322152	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	71951562	71951563	chr3:71951563:C:T	rs7642104	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr3	72082742	72082743	chr3:72082743:A:T	rs2322273	A	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	72082749	72082750	chr3:72082750:A:G	rs2322274	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	72082774	72082775	chr3:72082775:A:G	rs2322275	A	G	a	Sox1.mouse_HMG_2	1	1	-	7.162936270542438	2.518943963049203	ATAAATAAGATTCAT
chr3	72114796	72114797	chr3:72114797:A:G	rs4677092	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	72211786	72211787	chr3:72211787:C:T	rs9822424	C	T	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr3	72296401	72296402	chr3:72296402:A:G	rs6549451	A	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	72296407	72296408	chr3:72296408:G:A	rs6809642	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	72308011	72308012	chr3:72308012:G:A	rs9876321	G	A	G	Sox1.mouse_HMG_2	4	1	-	3.2648310600129564	-1.174520641280194	CTGACAACCAGTCAG
chr3	72659692	72659693	chr3:72659693:G:C	rs17010085	G	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	72965747	72965748	chr3:72965748:G:A	rs4569580	G	A	G	Sox1.mouse_HMG_2	10	1	+	6.547811806371358	2.4524677438161744	ATGTATAACAGTCAA
chr3	73037239	73037240	chr3:73037240:A:C	rs79773690	A	C	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	73095606	73095607	chr3:73095607:C:T	rs2637762	C	T	T	Sox1.mouse_HMG_2	2	1	-	3.7468207848485617	-0.8985817481676538	GCGACTTCCATTCTA
chr3	73158827	73158828	chr3:73158828:T:A	rs13090213	T	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	73296057	73296058	chr3:73296058:A:G	rs115010662	A	G	A	Sox1.mouse_HMG_2	11	1	-	13.770039717734063	6.861284938418844	GTGAATAACAGTCAT
chr3	73378523	73378524	chr3:73378524:A:G	rs75176320	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	73466027	73466028	chr3:73466028:C:T	rs62246079	C	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	73473903	73473904	chr3:73473904:T:C	rs6769320	T	C	C	Sox1.mouse_HMG_2	3	1	+	4.638575847620642	4.638575847620642	GTGTCTGACATTCAG
chr3	73491540	73491541	chr3:73491541:C:G	rs4263232	C	G	G	Sox1.mouse_HMG_2	0	1	+	4.523946849198601	4.188586822281757	CAGACTTCCAGTCAA
chr3	73591127	73591128	chr3:73591128:T:C	rs11128348	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	73766994	73766995	chr3:73766995:T:C	rs75821821	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	73768374	73768375	chr3:73768375:T:C	rs17011553	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.8870865633642087	-3.021668215951011	GTGAATGACAATCTG
chr3	73813381	73813382	chr3:73813382:C:T	rs560495302	C	T	C	Sox1.mouse_HMG_2	0	1	-	9.957522640482933	10.961758873118134	GTGAATTAAATTCAC
chr3	74059516	74059517	chr3:74059517:T:C	rs6798236	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.582656758448938	-2.3260980208662816	GTGAAAGCCATTCTT
chr3	74059517	74059518	chr3:74059518:G:T	rs77285912	G	T	G	Sox1.mouse_HMG_2	8	1	-	4.582656758448938	-0.26684005706315983	GTGAAAGCCATTCTT
chr3	74078616	74078617	chr3:74078617:C:G	rs11128376	C	G	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	74211493	74211494	chr3:74211494:A:G	rs61266041	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	74468004	74468005	chr3:74468005:C:G	rs7429595	C	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	74468024	74468025	chr3:74468025:A:G	rs1037385826	A	G	A	Sox1.mouse_HMG_2	0	1	-	4.228994671155426	4.494937864924858	TTAACTGGCATTCTT
chr3	74474120	74474121	chr3:74474121:C:T	rs6549599	C	T	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	74515664	74515665	chr3:74515665:C:A	rs7430822	C	A	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	74577143	74577144	chr3:74577144:G:A	rs13077765	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	75280943	75280944	chr3:75280944:C:T	rs79871787	C	T	c	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	75607047	75607048	chr3:75607048:C:T	rs2944627	C	T	.	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	75842685	75842686	chr3:75842686:G:A	rs112507665	G	A	g	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	76622885	76622886	chr3:76622886:C:A	rs2121789	C	A	C	Sox1.mouse_HMG_2	8	1	-	5.897631911008219	5.9717398831619395	CTGACTTGGATTCAA
chr3	76724963	76724964	chr3:76724964:A:T	rs59134157	A	T	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	76841269	76841270	chr3:76841270:A:C	rs6775462	A	C	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr3	77119039	77119040	chr3:77119040:G:C	rs7649552	G	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	77341699	77341700	chr3:77341700:G:C	rs77466032	G	C	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	77360233	77360234	chr3:77360234:C:T	rs73112287	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	77460140	77460141	chr3:77460141:C:G	rs2121817	C	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	77772827	77772828	chr3:77772828:C:T	rs28469660	C	T	C	Sox1.mouse_HMG_2	12	1	-	4.130554290399541	4.130554290399541	ATGAATACCATTGGG
chr3	77932519	77932520	chr3:77932520:C:G	rs147912605	C	G	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	79423646	79423647	chr3:79423647:G:A	rs56964141	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	79497581	79497582	chr3:79497582:C:T	rs6548619	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	79811395	79811396	chr3:79811396:A:G	rs34591565	A	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	80005846	80005847	chr3:80005847:C:T	rs9825395	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	80507247	80507248	chr3:80507248:A:C	rs7630175	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	81003901	81003902	chr3:81003902:C:T	rs2578302	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	81162044	81162045	chr3:81162045:G:A	rs74864243	G	A	G	Sox1.mouse_HMG_2	2	1	+	7.368509522699975	2.7231069896837585	TTGGATGACATTCAC
chr3	81193936	81193937	chr3:81193937:A:G	rs1540588	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	81236936	81236937	chr3:81236937:A:T	rs745476471	A	T	A	Sox1.mouse_HMG_2	9	1	+	5.934098996985432	-0.9746557823297891	ATGAGTAGCAGTCAA
chr3	81601691	81601692	chr3:81601692:T:G	rs751334443	T	G	T	Sox1.mouse_HMG_2	10	1	+	7.367878394668495	4.615280878943399	ATAAATTACATTTAT
chr3	82304322	82304323	chr3:82304323:G:A	rs13064651	G	A	G	Sox1.mouse_HMG_2	11	1	+	7.766415960874834	7.766415960874834	ATGAATTTCATGCAG
chr3	82316390	82316391	chr3:82316391:T:C	rs7612199	T	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	82680295	82680296	chr3:82680296:A:G	rs1124561	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	83022214	83022215	chr3:83022215:C:A	rs62261243	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	83434908	83434909	chr3:83434909:C:G	rs1376965	C	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	83946062	83946063	chr3:83946063:T:G	rs13090357	T	G	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	84042480	84042481	chr3:84042481:A:T	rs4856240	A	T	T	Sox1.mouse_HMG_2	7	1	+	3.682013203491609	2.8243840291164326	CTCAATAACCTTCAC
chr3	84836786	84836787	chr3:84836787:G:T	rs1146757	G	T	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	85170917	85170918	chr3:85170918:A:T	rs10511088	A	T	A	Sox1.mouse_HMG_2	10	1	+	2.8955647657761237	9.743506344056405	ATGAACAACAATCAC
chr3	85571859	85571860	chr3:85571860:A:G	rs57276248	A	G	A	Sox1.mouse_HMG_2	1	1	-	6.6850888926150684	2.041096585121835	ATGACTATAAGTCAT
chr3	85585065	85585066	chr3:85585066:C:G	rs62250501	C	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	85627207	85627208	chr3:85627208:G:A	rs55873202	G	A	G	Sox1.mouse_HMG_2	2	1	+	10.4587476074081	5.81334507439188	CTGAATACAATTCAG
chr3	86243467	86243468	chr3:86243468:T:C	rs932057	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr3	86511468	86511469	chr3:86511469:T:C	rs1494302	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	86653656	86653657	chr3:86653657:A:G	rs9811859	A	G	A	Sox1.mouse_HMG_2	7	1	+	6.7669393755949985	6.065884556053924	CTTAATAACATTCTT
chr3	86936902	86936903	chr3:86936903:C:A	rs4859084	C	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	86991399	86991400	chr3:86991400:A:T	rs565581672	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	87367945	87367946	chr3:87367946:T:C	rs148616297	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	87368022	87368023	chr3:87368023:A:G	rs9828738	A	G	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	87368040	87368041	chr3:87368041:G:T	rs9866824	G	T	G	Sox1.mouse_HMG_2	7	1	+	4.44977472930813	4.293200374474029	TTGACTTGCATTAAA
chr3	87502664	87502665	chr3:87502665:G:A	rs1509783	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	87504283	87504284	chr3:87504284:A:G	rs745890358	A	G	A	Sox1.mouse_HMG_2	8	1	+	4.086018505758933	3.2169806587353236	GTGACTATAATTCTG
chr3	87504295	87504296	chr3:87504296:G:A	rs62267724	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	87615335	87615336	chr3:87615336:A:G	rs6551502	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	87889016	87889017	chr3:87889017:C:A	rs76536752	C	A	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	88031712	88031713	chr3:88031713:T:C	chr3:88031713:T:C	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	88035017	88035018	chr3:88035018:G:C	chr3:88035018:G:C	G	C	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	88343277	88343278	chr3:88343278:T:C	rs13062825	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	88406348	88406349	chr3:88406349:G:A	rs1463473	G	A	A	Sox1.mouse_HMG_2	4	1	+	4.306211043966382	11.127623813126455	ATGAGTACAATTCAG
chr3	88488207	88488208	chr3:88488208:T:C	rs6766891	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	88509732	88509733	chr3:88509733:C:T	rs13098649	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	88525595	88525596	chr3:88525596:G:A	rs7432907	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	88930710	88930711	chr3:88930711:A:T	rs12493133	A	T	A	Sox1.mouse_HMG_2	10	1	-	4.430637830844813	-2.4173037474354673	CAGAAAAACATTCAC
chr3	88990810	88990811	chr3:88990811:G:A	rs6803153	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	89740937	89740938	chr3:89740938:T:C	rs72912079	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	89740980	89740981	chr3:89740981:C:T	rs79233031	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr3	90136212	90136213	chr3:90136213:G:C	rs73155336	G	C	G	Sox1.mouse_HMG_2	8	1	-	4.177816167815246	-1.5407184947204615	TTGAATCACTTTCAG
chr3	91312850	91312851	chr3:91312851:A:G	rs1358796608	A	G	A	Sox1.mouse_HMG_2	4	1	+	2.84422996264732	-3.9771828065127512	CTGAATCACTGTCAT
chr3	94426538	94426539	chr3:94426539:T:C	rs4857440	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	94520880	94520881	chr3:94520881:G:A	rs9832797	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr3	96753529	96753530	chr3:96753530:G:C	rs79813534	G	C	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	97205527	97205528	chr3:97205528:T:C	rs79592798	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr3	97485698	97485699	chr3:97485699:T:C	rs13061165	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	97813136	97813137	chr3:97813137:A:G	rs567104646	A	G	a	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	97965909	97965910	chr3:97965910:G:A	rs9877544	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	98116169	98116170	chr3:98116170:T:G	rs6439635	T	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr3	98165795	98165796	chr3:98165796:C:T	rs12490137	C	T	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	98189004	98189005	chr3:98189005:A:G	rs13083770	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	98199769	98199770	chr3:98199770:C:T	rs9879316	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr3	98360634	98360635	chr3:98360635:C:T	rs9882458	C	T	.	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	98687855	98687856	chr3:98687856:A:G	rs74898257	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	98687858	98687859	chr3:98687859:T:G	rs79299770	T	G	c	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr3	98726479	98726480	chr3:98726480:A:G	rs865474	A	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	98810319	98810320	chr3:98810320:A:G	rs278379	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.70813735615672	-1.1398042221235614	ATGAATTACTTTCTC
chr3	98963513	98963514	chr3:98963514:G:A	rs11914591	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	99013926	99013927	chr3:99013927:A:G	rs80057660	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	99052240	99052241	chr3:99052241:A:G	rs17313	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	99084306	99084307	chr3:99084307:T:C	rs145780847	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	99294936	99294937	chr3:99294937:G:A	rs9860091	G	A	G	Sox1.mouse_HMG_2	4	1	-	5.936058816111792	1.4967071148186397	TTGACTTCGATTCAA
chr3	99410170	99410171	chr3:99410171:G:T	rs2623321	G	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	99626178	99626179	chr3:99626179:G:A	rs534705	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	99635635	99635636	chr3:99635636:C:T	rs73150246	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	99639554	99639555	chr3:99639555:C:T	rs2280504	C	T	T	Sox1.mouse_HMG_2	4	1	+	4.108239807101461	-0.33111189419168985	CTGACTGGCATCCAA
chr3	99646083	99646084	chr3:99646084:G:T	rs16841573	G	T	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	99996010	99996011	chr3:99996011:T:C	rs9852435	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	100082783	100082784	chr3:100082784:A:C	rs13069311	A	C	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	100262233	100262234	chr3:100262234:T:C	rs6791887	T	C	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr3	100525980	100525981	chr3:100525981:G:A	rs6792014	G	A	A	Sox1.mouse_HMG_2	13	1	+	3.8539656246834975	8.800083312456147	GTGAATAACACTCGC
chr3	100559171	100559172	chr3:100559172:A:G	rs6441329	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	100591750	100591751	chr3:100591751:C:T	rs6771421	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	100609326	100609327	chr3:100609327:C:A	rs76584155	C	A	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	100682568	100682569	chr3:100682569:C:T	rs111431833	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	100879493	100879494	chr3:100879494:A:G	rs4328836	A	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	100892768	100892769	chr3:100892769:C:T	rs11715875	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	101292165	101292166	chr3:101292166:T:C	rs13089552	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	101608136	101608137	chr3:101608137:A:T	rs35346667	A	T	a	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	101791789	101791790	chr3:101791790:C:T	rs9873837	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.275260828744282	-0.3701417042719334	AGGAATAGAAGTCAT
chr3	102016727	102016728	chr3:102016728:A:G	rs76066149	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	102258499	102258500	chr3:102258500:C:T	rs34264319	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr3	102378483	102378484	chr3:102378484:T:G	rs11927258	T	G	G	Sox1.mouse_HMG_2	5	1	+	4.1733837563999785	-2.7353710229152406	TCCACTAACATTCAT
chr3	102600366	102600367	chr3:102600367:A:G	rs1284742	A	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr3	102860266	102860267	chr3:102860267:G:T	rs1949124	G	T	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	102977977	102977978	chr3:102977978:G:A	rs573766367	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	103086005	103086006	chr3:103086006:G:A	rs2398835	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	103794591	103794592	chr3:103794592:C:T	rs1673866	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	103845386	103845387	chr3:103845387:T:C	rs2608481	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	104564298	104564299	chr3:104564299:G:T	rs55681143	G	T	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr3	104876945	104876946	chr3:104876946:C:T	rs7646548	C	T	C	Sox1.mouse_HMG_2	11	1	-	5.3192246841363735	5.3192246841363735	GTGAATTGCAGGCAT
chr3	104876967	104876968	chr3:104876968:C:T	rs9825536	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	104880089	104880090	chr3:104880090:G:A	rs11921861	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.609518697298903	-0.03588383571731335	ATGAATGTCAGTTTT
chr3	105014824	105014825	chr3:105014825:G:A	rs28661692	G	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	105144121	105144122	chr3:105144122:G:A	rs72996507	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	105174121	105174122	chr3:105174122:T:C	rs146898427	T	C	T	Sox1.mouse_HMG_2	13	1	-	8.03821529188013	3.0920976041074817	GTGAATAGCTTTCAC
chr3	105174139	105174140	chr3:105174140:A:G	rs16850936	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	105285072	105285073	chr3:105285073:A:G	rs1716142	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	105448281	105448282	chr3:105448282:C:A	rs149574229	C	A	c	Sox1.mouse_HMG_2	8	1	+	8.39804212577812	3.54854531026602	AAGAATATCAGTCAC
chr3	105551334	105551335	chr3:105551335:G:T	rs75101986	G	T	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	105551376	105551377	chr3:105551377:A:G	rs9876895	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	105606026	105606027	chr3:105606027:T:C	rs2120582	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	105746412	105746413	chr3:105746413:A:G	rs13059405	A	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	105849401	105849402	chr3:105849402:T:C	rs1867192	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	106023262	106023263	chr3:106023263:G:A	rs75847184	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	106248394	106248395	chr3:106248395:C:A	rs13060369	C	A	A	Sox1.mouse_HMG_2	2	1	-	3.5180895011080136	-3.378604830514698	ATGAAAAACAGTCTG
chr3	106283218	106283219	chr3:106283219:A:G	rs77253560	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	106283230	106283231	chr3:106283231:G:C	rs78573149	G	C	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	106333001	106333002	chr3:106333002:T:C	rs7616865	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr3	107142778	107142779	chr3:107142779:T:G	rs6798375	T	G	T	Sox1.mouse_HMG_2	4	1	-	8.095119544731972	5.713058476865048	CTGAATAGCATGCAG
chr3	107870906	107870907	chr3:107870907:T:A	rs1991782	T	A	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	107998061	107998062	chr3:107998062:T:G	rs16854078	T	G	T	Sox1.mouse_HMG_2	14	1	-	5.186186909960782	5.629283931920732	CTGAATAGCAGTGAA
chr3	108175744	108175745	chr3:108175745:T:C	rs723271	T	C	C	Sox1.mouse_HMG_2	4	1	-	5.092345098642489	-1.7290676705175836	GTAAATTCCATTTAC
chr3	108223937	108223938	chr3:108223938:G:A	rs62267926	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	108223967	108223968	chr3:108223968:T:G	rs1299076	T	G	T	Sox1.mouse_HMG_2	11	1	+	6.9909088283313086	0.08215404901608872	ATGTATAACAGTCAC
chr3	108257516	108257517	chr3:108257517:T:G	rs927113616	T	G	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	108301871	108301872	chr3:108301872:G:A	rs59158075	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	108346519	108346520	chr3:108346520:G:A	rs4367073	G	A	A	Sox1.mouse_HMG_2	0	1	+	2.7051276748287196	3.709363907463922	GTGCAGAACATTCAT
chr3	108589318	108589319	chr3:108589319:G:A	rs35935525	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	108918723	108918724	chr3:108918724:T:C	rs4855678	T	C	T	Sox1.mouse_HMG_2	10	1	+	6.435647083457307	-0.4122944948229744	CTGAATTCCATTTTA
chr3	109122950	109122951	chr3:109122951:T:C	rs7636082	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr3	109152249	109152250	chr3:109152250:C:T	rs1606829	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	109554150	109554151	chr3:109554151:A:G	rs1533853	A	G	A	Sox1.mouse_HMG_2	4	1	+	11.007834432989638	4.186421663829567	ATGAATAATATTCAC
chr3	109828866	109828867	chr3:109828867:G:A	rs677533	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	109929220	109929221	chr3:109929221:C:T	rs3844044	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	110181061	110181062	chr3:110181062:C:T	rs116857477	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	110383549	110383550	chr3:110383550:A:G	chr3:110383550:A:G	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	110485425	110485426	chr3:110485426:C:T	rs11721302	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	110527228	110527229	chr3:110527229:G:T	rs11925811	G	T	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	110580030	110580031	chr3:110580031:G:A	rs9855219	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr3	110608766	110608767	chr3:110608767:A:T	rs62270079	A	T	A	Sox1.mouse_HMG_2	1	1	-	5.251245578723593	0.6072532712303608	TTGCATTCCATTCTT
chr3	110754694	110754695	chr3:110754695:A:C	rs73218890	A	C	A	Sox1.mouse_HMG_2	6	1	-	3.597225984623721	2.998053997496477	ATCATTTACATTCAC
chr3	110966165	110966166	chr3:110966166:C:T	rs2085992	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	110969703	110969704	chr3:110969704:C:T	rs73852350	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	111329486	111329487	chr3:111329487:G:A	rs7622384	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	111329502	111329503	chr3:111329503:T:C	rs7634000	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.819385021907014	-1.0893697574082062	ATGACTTGCATACAC
chr3	111393287	111393288	chr3:111393288:G:A	rs72946117	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	111546578	111546579	chr3:111546579:T:C	rs62273542	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.213290066012974	-2.6954647133022456	ATGAAAATCATTTAC
chr3	111687240	111687241	chr3:111687241:A:G	rs2036995	A	G	A	Sox1.mouse_HMG_2	14	1	+	4.014765170574103	4.179406418469051	ATAAATAGCACTCAA
chr3	111808397	111808398	chr3:111808398:G:A	rs6783431	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	111812949	111812950	chr3:111812950:A:T	rs143423065	A	T	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	111828471	111828472	chr3:111828472:G:C	rs8179903	G	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	111952946	111952947	chr3:111952947:G:A	rs17492619	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	111970441	111970442	chr3:111970442:T:G	rs11708860	T	G	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	112021225	112021226	chr3:112021226:A:G	rs2218326	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	112053308	112053309	chr3:112053309:G:A	rs10934133	G	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	112102050	112102051	chr3:112102051:A:G	rs16859182	A	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	112303293	112303294	chr3:112303294:A:G	rs869042	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	112446491	112446492	chr3:112446492:C:T	rs13090873	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	112519494	112519495	chr3:112519495:T:C	rs77253692	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	112979571	112979572	chr3:112979572:T:C	rs72952160	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	113156012	113156013	chr3:113156013:A:T	rs9810734	A	T	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	113167672	113167673	chr3:113167673:C:T	rs72942405	C	T	C	Sox1.mouse_HMG_2	11	1	+	3.9620188626000115	10.870773641915232	ATAAATATCATCCAG
chr3	113167686	113167687	chr3:113167687:G:A	rs1124500	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	113210983	113210984	chr3:113210984:G:C	rs76538338	G	C	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	113494332	113494333	chr3:113494333:G:C	rs182783287	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.078999045661944	-2.8214496048044198	TTGGATTTCAGTCAG
chr3	113494335	113494336	chr3:113494336:T:A	rs140580918	T	A	T	Sox1.mouse_HMG_2	9	1	-	4.078999045661944	-2.829755733653276	TTGGATTTCAGTCAG
chr3	113494354	113494355	chr3:113494355:T:C	rs67201219	T	C	-	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	113575047	113575048	chr3:113575048:G:T	rs3821682	G	T	G	Sox1.mouse_HMG_2	8	1	-	5.431548266397883	0.5820514508857834	AAGACTACCATTTAT
chr3	113585933	113585934	chr3:113585934:A:G	rs9827928	A	G	a	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	113915111	113915112	chr3:113915112:T:C	rs974702	T	C	t	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	113963896	113963897	chr3:113963897:C:T	rs6809347	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	114480611	114480612	chr3:114480612:G:A	chr3:114480612:G:A	G	A	G	Sox1.mouse_HMG_2	5	1	+	3.0404877017455627	3.0404877017455627	CTGAAGAACATCCAT
chr3	114510279	114510280	chr3:114510280:T:G	rs74470303	T	G	T	Sox1.mouse_HMG_2	6	1	+	3.4277288121626666	2.8285568250354216	GGGAAGTCCATTCAT
chr3	114957835	114957836	chr3:114957836:G:A	rs6771110	G	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	115265019	115265020	chr3:115265020:C:A	rs9851621	C	A	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	115291531	115291532	chr3:115291532:A:G	rs971707	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	115659913	115659914	chr3:115659914:A:G	rs189136952	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	115881686	115881687	chr3:115881687:G:A	rs68160605	G	A	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr3	115997318	115997319	chr3:115997319:T:C	rs35764849	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	116001245	116001246	chr3:116001246:G:A	rs9289034	G	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	116066370	116066371	chr3:116066371:A:C	rs55813816	A	C	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	116135314	116135315	chr3:116135315:C:T	rs7635196	C	T	C	Sox1.mouse_HMG_2	0	1	-	3.104433207938976	4.10866944057418	GTGAATGCCCTTTAT
chr3	116302605	116302606	chr3:116302606:C:T	rs1993733	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	116369268	116369269	chr3:116369269:C:T	rs13323946	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	116393482	116393483	chr3:116393483:C:T	rs185570450	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	116412360	116412361	chr3:116412361:T:G	rs1731596	T	G	G	Sox1.mouse_HMG_2	11	1	+	8.796174364273046	1.8874195849578244	CTGAAAAACATTCAG
chr3	116497145	116497146	chr3:116497146:C:T	rs112003148	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	116569874	116569875	chr3:116569875:G:C	rs1712986	G	C	G	Sox1.mouse_HMG_2	14	1	-	3.9482776835948865	3.669821909529884	CTGACTAACAGTAAC
chr3	116576156	116576157	chr3:116576157:G:A	rs2102847	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.8618238811537067	3.4008794274466005	AAGAATTCCCTTCAC
chr3	116777047	116777048	chr3:116777048:C:T	rs9869944	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	116789693	116789694	chr3:116789694:C:T	rs1545017	C	T	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	116899299	116899300	chr3:116899300:C:T	rs12494768	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	117582587	117582588	chr3:117582588:C:T	rs12491489	C	T	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	117706244	117706245	chr3:117706245:T:G	rs955769704	T	G	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	117735552	117735553	chr3:117735553:A:G	rs569639624	A	G	A	Sox1.mouse_HMG_2	1	1	+	7.8790858632323095	7.574614684153734	TAGAATAACATTCTC
chr3	117794356	117794357	chr3:117794357:T:A	rs13084363	T	A	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	117869139	117869140	chr3:117869140:C:T	rs115655748	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	117872508	117872509	chr3:117872509:A:G	rs7622841	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	117885367	117885368	chr3:117885368:G:A	rs56204450	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	117936021	117936022	chr3:117936022:T:C	rs62264780	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	117971627	117971628	chr3:117971628:C:T	rs116261399	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	118018294	118018295	chr3:118018295:C:A	rs73178528	C	A	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	118259280	118259281	chr3:118259281:T:C	rs36109087	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	118333429	118333430	chr3:118333430:A:C	rs13074387	A	C	C	Sox1.mouse_HMG_2	1	1	-	2.0884655983547185	-2.8599978882170904	GTGACTTCCAGGCAG
chr3	118557649	118557650	chr3:118557650:G:C	rs75850309	G	C	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	118577564	118577565	chr3:118577565:T:C	rs77108305	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.557685411266214	-3.351069368049006	CTGAATTGACTTCAT
chr3	118802111	118802112	chr3:118802112:T:G	rs798590	T	G	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr3	118981935	118981936	chr3:118981936:T:C	rs35874	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	119207324	119207325	chr3:119207325:C:T	rs16829477	C	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	119239915	119239916	chr3:119239916:C:T	rs545381113	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	119529473	119529474	chr3:119529474:A:G	rs9855093	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	119616138	119616139	chr3:119616139:G:A	rs2247660	G	A	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	119671371	119671372	chr3:119671372:G:A	rs6794484	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	119671414	119671415	chr3:119671415:G:C	rs6794579	G	C	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	119937290	119937291	chr3:119937291:T:C	rs77881395	T	C	T	Sox1.mouse_HMG_2	1	1	-	5.583697862626868	5.279226683548292	CACAATTCCATTCAT
chr3	120116785	120116786	chr3:120116786:C:T	rs112321186	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	120327118	120327119	chr3:120327119:T:C	rs11554681	T	C	T	Sox1.mouse_HMG_2	6	1	-	5.852787327843107	4.412609905974468	CTGACTACCATCCAA
chr3	120327125	120327126	chr3:120327126:T:C	rs113457089	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	120362397	120362398	chr3:120362398:T:G	rs12638445	T	G	T	Sox1.mouse_HMG_2	5	1	+	8.453589530154169	1.5448347508389482	CTGAATCTCATTCTT
chr3	120473657	120473658	chr3:120473658:G:T	rs77911853	G	T	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	120475018	120475019	chr3:120475019:G:A	rs114180041	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	120504037	120504038	chr3:120504038:G:A	rs55912247	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	120558596	120558597	chr3:120558597:G:C	rs143311419	G	C	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	120600090	120600091	chr3:120600091:A:G	rs701991	A	G	.	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	120652566	120652567	chr3:120652567:G:A	rs2551607	G	A	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	120675756	120675757	chr3:120675757:T:A	rs2733825	T	A	T	Sox1.mouse_HMG_2	10	1	+	5.0057523806580315	-1.84218919762225	AGGAATAGGATTCAG
chr3	120795502	120795503	chr3:120795503:A:G	rs16831698	A	G	-	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr3	121660079	121660080	chr3:121660080:G:A	rs12493927	G	A	G	Sox1.mouse_HMG_2	4	1	-	2.6268072834815186	-1.812544417811632	CTGACTCCCAGTCTG
chr3	122299982	122299983	chr3:122299983:A:G	rs74589404	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.876661742377556	-1.9712798359027244	ATGAATTCCATTGTA
chr3	122580875	122580876	chr3:122580876:C:T	rs7641610	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	122582474	122582475	chr3:122582475:C:T	rs2332238	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	122634513	122634514	chr3:122634514:A:C	rs11716890	A	C	A	Sox1.mouse_HMG_2	5	1	-	3.845929963354642	-3.06282481596058	CTGAATAGCATTTCA
chr3	122855417	122855418	chr3:122855418:C:T	rs76598382	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	122947376	122947377	chr3:122947377:A:C	chr3:122947377:A:C	A	C	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	123090267	123090268	chr3:123090268:T:G	rs141131868	T	G	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	123304209	123304210	chr3:123304210:G:A	chr3:123304210:G:A	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	123683399	123683400	chr3:123683400:T:G	chr3:123683400:T:G	T	G	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	123749895	123749896	chr3:123749896:C:T	rs570556581	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	123859185	123859186	chr3:123859186:A:G	rs16834817	A	G	a	Sox1.mouse_HMG_2	2	1	+	6.462831654109343	11.108234187125563	CTAAATTCCATTCTA
chr3	124079392	124079393	chr3:124079393:T:C	rs2332736	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	124263683	124263684	chr3:124263684:A:G	rs76305045	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	124297151	124297152	chr3:124297152:A:G	rs13076923	A	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	124328246	124328247	chr3:124328247:G:A	rs73185299	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	124373704	124373705	chr3:124373705:C:T	rs9882580	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	124521473	124521474	chr3:124521474:T:G	rs77714562	T	G	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	124565477	124565478	chr3:124565478:T:C	rs2651625	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	124583510	124583511	chr3:124583511:C:A	rs34455219	C	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	124587355	124587356	chr3:124587356:G:A	rs13086167	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	124587364	124587365	chr3:124587365:A:G	rs13085691	A	G	a	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	124599546	124599547	chr3:124599547:C:T	rs333249	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	124599554	124599555	chr3:124599555:G:A	rs16835642	G	A	A	Sox1.mouse_HMG_2	8	1	-	9.432812640982652	3.788385950600666	CTGAATAACAGTTAT
chr3	124631830	124631831	chr3:124631831:T:C	rs2651603	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	124690653	124690654	chr3:124690654:C:T	rs113927031	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	124752839	124752840	chr3:124752840:A:C	rs13323057	A	C	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	124882614	124882615	chr3:124882615:G:A	rs115661943	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	124929620	124929621	chr3:124929621:A:G	rs9824790	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	125156198	125156199	chr3:125156199:G:A	rs6788986	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	125540401	125540402	chr3:125540402:C:T	rs72979716	C	T	C	Sox1.mouse_HMG_2	1	1	+	5.5728840359512475	10.216876343444481	ACGACTATCAGTCAA
chr3	125605098	125605099	chr3:125605099:C:T	rs138897503	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	125621506	125621507	chr3:125621507:A:G	rs4572722	A	G	G	Sox1.mouse_HMG_2	4	1	+	6.265703684090775	-0.5557090850692966	ATGAATCACTTTCAT
chr3	125642589	125642590	chr3:125642590:C:T	rs9816185	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	125685860	125685861	chr3:125685861:C:A	rs188000085	C	A	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	125835495	125835496	chr3:125835496:G:A	rs3112275	G	A	.	Sox1.mouse_HMG_2	10	1	+	8.118176126190136	4.02283206363495	ATAAATATCAGTCAG
chr3	125923445	125923446	chr3:125923446:T:C	rs111324805	T	C	.	Sox1.mouse_HMG_2	9	1	-	4.067560018158086	-2.841194761157134	CAGGATTCCATTCAT
chr3	126049120	126049121	chr3:126049121:C:T	rs13067299	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	126275363	126275364	chr3:126275364:C:T	rs116242044	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	126314366	126314367	chr3:126314367:C:T	rs58214662	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	126320341	126320342	chr3:126320342:C:A	rs78151629	C	A	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	126320343	126320344	chr3:126320344:C:A	rs9854853	C	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr3	126396804	126396805	chr3:126396805:C:A	rs75529867	C	A	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	126448931	126448932	chr3:126448932:C:T	rs16837490	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	126481559	126481560	chr3:126481560:A:C	rs1799398	A	C	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	126522259	126522260	chr3:126522260:T:C	rs113313776	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	126522302	126522303	chr3:126522303:C:T	chr3:126522303:C:T	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	126887842	126887843	chr3:126887843:C:T	rs115152474	C	T	C	Sox1.mouse_HMG_2	0	1	-	3.3381121704478067	4.342348403083008	GTGATTCTCATTCAG
chr3	126889754	126889755	chr3:126889755:A:G	rs7633939	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	127124379	127124380	chr3:127124380:C:G	rs143114285	C	G	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	127134468	127134469	chr3:127134469:G:A	rs78612134	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	127307494	127307495	chr3:127307495:G:A	rs76185878	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.101520796644764	-1.5710663070234907	CTGACAACCATTCTC
chr3	127443705	127443706	chr3:127443706:T:C	rs78035593	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	127527475	127527476	chr3:127527476:C:G	rs2720237	C	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	127955337	127955338	chr3:127955338:G:A	rs116661419	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	128260657	128260658	chr3:128260658:T:G	rs2955098	T	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	128424783	128424784	chr3:128424784:T:A	rs115905567	T	A	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	128572507	128572508	chr3:128572508:T:C	rs79826437	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	128592190	128592191	chr3:128592191:C:A	rs62273239	C	A	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	128618594	128618595	chr3:128618595:A:C	rs2712430	A	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr3	128682081	128682082	chr3:128682082:G:A	rs116602288	G	A	.	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	129026934	129026935	chr3:129026935:G:A	rs114655660	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	129080663	129080664	chr3:129080664:T:C	rs4927929	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	129308780	129308781	chr3:129308781:C:A	rs141752693	C	A	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	129441185	129441186	chr3:129441186:T:A	rs3138326	T	A	T	Sox1.mouse_HMG_2	0	1	+	7.672601996128435	8.607421395616228	TTGAAAATCATTCAG
chr3	129553852	129553853	chr3:129553853:G:C	rs61493596	G	C	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr3	129636199	129636200	chr3:129636200:G:T	rs2625994	G	T	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	129645410	129645411	chr3:129645411:C:A	rs62267598	C	A	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	129987797	129987798	chr3:129987798:C:A	rs13059321	C	A	c	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	130096755	130096756	chr3:130096756:T:C	rs73866092	T	C	t	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	130179519	130179520	chr3:130179520:C:T	rs149037615	C	T	c	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	130389219	130389220	chr3:130389220:A:G	rs57575291	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	130491578	130491579	chr3:130491579:C:T	rs60132841	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	130491603	130491604	chr3:130491604:T:C	rs12152532	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.866935698196003	-3.0418190811192165	AGGAATTCCATTCCG
chr3	130714120	130714121	chr3:130714121:A:G	rs75998334	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	130786585	130786586	chr3:130786586:C:T	rs61245148	C	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	131811638	131811639	chr3:131811639:T:C	rs7634981	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	131880442	131880443	chr3:131880443:T:C	rs6769415	T	C	T	Sox1.mouse_HMG_2	14	1	-	4.550837439394605	4.715478687289552	CTGACATTCATTCAA
chr3	132164013	132164014	chr3:132164014:G:C	rs9869709	G	C	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	132196016	132196017	chr3:132196017:A:C	rs6802179	A	C	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	132196060	132196061	chr3:132196061:G:A	rs372590275	G	A	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	132231678	132231679	chr3:132231679:C:T	rs115302318	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	132231704	132231705	chr3:132231705:G:A	rs575097826	G	A	G	Sox1.mouse_HMG_2	0	1	-	2.830757605753099	2.5648144119836664	CTGGCTTGCATTCTT
chr3	132255219	132255220	chr3:132255220:A:G	rs116367652	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	132318225	132318226	chr3:132318226:T:G	rs28608063	T	G	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	132658767	132658768	chr3:132658768:T:C	rs59426843	T	C	C	Sox1.mouse_HMG_2	6	1	-	4.378553540171672	2.9383761183030326	ATCACTAGCATTTAT
chr3	132793104	132793105	chr3:132793105:A:G	rs77320909	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr3	132974743	132974744	chr3:132974744:A:C	rs2369955	A	C	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	133034382	133034383	chr3:133034383:G:A	rs113891660	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr3	133081590	133081591	chr3:133081591:A:G	rs10512887	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	133125912	133125913	chr3:133125913:A:G	rs11710705	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	133371261	133371262	chr3:133371262:C:T	rs1795101	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr3	133393479	133393480	chr3:133393480:A:G	rs6802663	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	133533253	133533254	chr3:133533254:G:C	rs9877563	G	C	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	133718933	133718934	chr3:133718934:A:G	rs4287912	A	G	g	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	133836101	133836102	chr3:133836102:G:A	rs76501142	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	133879830	133879831	chr3:133879831:G:C	rs1917780	G	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	133916146	133916147	chr3:133916147:G:A	rs61465346	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	133916340	133916341	chr3:133916341:A:G	rs149100536	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	134144744	134144745	chr3:134144745:A:G	rs10935100	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	134253006	134253007	chr3:134253007:A:C	rs145997461	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	134316519	134316520	chr3:134316520:G:A	rs35527623	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	134761754	134761755	chr3:134761755:C:A	rs67649562	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	134761771	134761772	chr3:134761772:A:G	rs13093017	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	135076625	135076626	chr3:135076626:G:A	rs2103154	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr3	135125055	135125056	chr3:135125056:C:G	rs9826352	C	G	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	135621768	135621769	chr3:135621769:C:A	rs114527068	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	136024598	136024599	chr3:136024599:A:G	rs6439618	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	136075589	136075590	chr3:136075590:A:G	rs79037025	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.165750738504436	-2.7430040408107828	ATGCCTAACAGTCAA
chr3	136251437	136251438	chr3:136251438:C:T	rs150295687	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	136586633	136586634	chr3:136586634:C:G	rs6806123	C	G	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	137020497	137020498	chr3:137020498:T:A	rs141428508	T	A	T	Sox1.mouse_HMG_2	11	1	+	1.7677493852924768	-5.141005394022743	GTGGCTGCCAGTCAC
chr3	137442047	137442048	chr3:137442048:A:G	rs55858403	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	137451549	137451550	chr3:137451550:C:A	rs67273144	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	137511961	137511962	chr3:137511962:C:T	rs2344794	C	T	C	Sox1.mouse_HMG_2	2	1	-	6.64875785004023	2.003355317024015	ATGACTATCATTCCA
chr3	137642279	137642280	chr3:137642280:C:T	rs112301068	C	T	c	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	138230853	138230854	chr3:138230854:A:C	rs148678780	A	C	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	138386415	138386416	chr3:138386416:C:G	rs73227593	C	G	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	138681698	138681699	chr3:138681699:T:C	rs115258686	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	139105530	139105531	chr3:139105531:C:T	rs78256503	C	T	C	Sox1.mouse_HMG_2	7	1	-	5.562271884091373	6.263326703632449	GTGACTTGGATTCAA
chr3	139656044	139656045	chr3:139656045:T:C	chr3:139656045:T:C	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.9589548099262215	1.0128371221535732	CTGGATTCCAGTCAT
chr3	140365946	140365947	chr3:140365947:T:G	rs3943277	T	G	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	140442997	140442998	chr3:140442998:A:C	rs11712249	A	C	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	140629851	140629852	chr3:140629852:A:G	rs1269087559	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.14709256698743	-2.76166221232779	CTGATTTGCATTCTG
chr3	141107593	141107594	chr3:141107594:T:C	rs62283594	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.408821609822734	-0.23517069767050042	GTGAATATCATCCTG
chr3	141295276	141295277	chr3:141295277:T:G	rs72984531	T	G	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	141488255	141488256	chr3:141488256:G:T	chr3:141488256:G:T	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	141708597	141708598	chr3:141708598:C:T	rs9870843	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	142057150	142057151	chr3:142057151:C:T	rs73232653	C	T	C	Sox1.mouse_HMG_2	4	1	+	4.141708567051518	-0.2976431342416327	GGGACTGTCAGTCAT
chr3	142057669	142057670	chr3:142057670:A:T	rs552676894	A	T	A	Sox1.mouse_HMG_2	11	1	-	4.514029174561047	-2.3947256047541727	TTGAAATGCAGTCAC
chr3	142725290	142725291	chr3:142725291:G:A	rs1403725	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr3	142897147	142897148	chr3:142897148:A:C	rs78579538	A	C	A	Sox1.mouse_HMG_2	4	1	+	6.969887287456879	4.5878262195899575	GAGAATACCATTCTA
chr3	142905615	142905616	chr3:142905616:T:C	rs79691033	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.08366617610051	-2.7377465930595632	GTGAATATCTTTTAT
chr3	143038064	143038065	chr3:143038065:A:G	rs11929440	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	143158384	143158385	chr3:143158385:A:G	rs10804687	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	143267595	143267596	chr3:143267596:A:G	rs7653038	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	143332241	143332242	chr3:143332242:G:A	rs373545849	G	A	G	Sox1.mouse_HMG_2	7	1	-	12.486196437933058	12.025251984225951	AAGAATACCATTCAT
chr3	143415878	143415879	chr3:143415879:A:G	rs7617737	A	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr3	143601467	143601468	chr3:143601468:A:G	rs56156616	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	143647620	143647621	chr3:143647621:T:C	rs1242076	T	C	T	Sox1.mouse_HMG_2	10	1	-	3.9470520640453177	8.0423961266005	TAGAATAACAATCAG
chr3	143763273	143763274	chr3:143763274:C:T	rs77716158	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	143979911	143979912	chr3:143979912:T:G	rs721572	T	G	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	144055688	144055689	chr3:144055689:G:A	rs16854874	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	144295667	144295668	chr3:144295668:T:G	rs9861302	T	G	T	Sox1.mouse_HMG_2	13	1	-	5.846720353387709	-0.4739956557416383	AAAAATTCCATTCAG
chr3	144772492	144772493	chr3:144772493:A:C	rs78132064	A	C	A	Sox1.mouse_HMG_2	9	1	+	3.221528863560811	-3.6872259157544094	ACGAAAAACAGTCAT
chr3	144772504	144772505	chr3:144772505:A:T	rs16855950	A	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	145153032	145153033	chr3:145153033:A:G	rs751961270	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	145220840	145220841	chr3:145220841:G:A	rs1348658	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	145623791	145623792	chr3:145623792:C:T	rs1403495	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	145753057	145753058	chr3:145753058:A:G	rs766452471	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.947994319408089	-1.8734184497519832	ATGAATCACATGCAA
chr3	146026884	146026885	chr3:146026885:T:C	rs1449454	T	C	T	Sox1.mouse_HMG_2	5	1	+	8.434388519831915	1.525633740516691	CTGAATAGCACTCAC
chr3	146071908	146071909	chr3:146071909:A:G	rs1375587	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	146126685	146126686	chr3:146126686:G:A	rs895930	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	146155328	146155329	chr3:146155329:A:T	rs116419347	A	T	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	146155351	146155352	chr3:146155352:A:T	rs57655223	A	T	A	Sox1.mouse_HMG_2	4	1	+	5.125078121984228	-1.6963346471758431	TTAAATAACAGTCTC
chr3	146157261	146157262	chr3:146157262:G:A	rs73148997	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	146250116	146250117	chr3:146250117:A:G	rs10460850	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	146317015	146317016	chr3:146317016:C:T	rs2221850	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr3	146334102	146334103	chr3:146334103:C:T	rs7647333	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	146539519	146539520	chr3:146539520:G:C	rs1882974	G	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr3	146681329	146681330	chr3:146681330:T:G	rs6804783	T	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	148081424	148081425	chr3:148081425:T:C	rs548751840	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	148642880	148642881	chr3:148642881:G:A	rs114133926	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	148902973	148902974	chr3:148902974:C:A	rs12496367	C	A	C	Sox1.mouse_HMG_2	8	1	+	3.488643093403175	-1.3608537221089234	GAGAATTGCAATCAT
chr3	149246904	149246905	chr3:149246905:G:A	rs7618020	G	A	G	Sox1.mouse_HMG_2	7	1	+	3.194635375935606	3.8956901954766803	TTGAATGGCATGCTG
chr3	149251149	149251150	chr3:149251150:T:C	rs4681493	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	149330794	149330795	chr3:149330795:C:G	rs72992051	C	G	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr3	149379000	149379001	chr3:149379001:C:T	rs6776898	C	T	T	Sox1.mouse_HMG_2	0	1	-	3.529225934357661	4.533462166992862	GTGAACCTCATTCAC
chr3	149490146	149490147	chr3:149490147:T:C	rs9289788	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	149490180	149490181	chr3:149490181:T:C	rs9289789	T	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	149589869	149589870	chr3:149589870:A:G	rs4681528	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	149815440	149815441	chr3:149815441:G:A	rs12494028	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	150071589	150071590	chr3:150071590:A:G	rs62268859	A	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	150343194	150343195	chr3:150343195:T:G	rs62271371	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	150538791	150538792	chr3:150538792:C:A	rs6770899	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	150614342	150614343	chr3:150614343:T:C	rs59356053	T	C	T	Sox1.mouse_HMG_2	3	1	-	5.025332977230416	-1.8834218020848037	TTGACTAACATTTTA
chr3	150681175	150681176	chr3:150681176:C:G	rs73152545	C	G	C	Sox1.mouse_HMG_2	0	1	+	5.45610939921481	5.120749372297968	CTCACTAACAGTCAC
chr3	150799123	150799124	chr3:150799124:A:G	rs6440698	A	G	a	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	150805526	150805527	chr3:150805527:C:T	rs16862853	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.645009345085858	-0.9994173452961287	ATGCCTACCATTCTT
chr3	151021287	151021288	chr3:151021288:A:G	rs3105875	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr3	151200951	151200952	chr3:151200952:T:C	rs2870413	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	151289636	151289637	chr3:151289637:A:T	rs12488267	A	T	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr3	151367386	151367387	chr3:151367387:G:T	rs1388619	G	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr3	151384294	151384295	chr3:151384295:T:C	rs3732766	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	151778215	151778216	chr3:151778216:C:T	rs16863645	C	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	151885607	151885608	chr3:151885608:C:A	rs114721814	C	A	c	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	152121635	152121636	chr3:152121636:G:A	rs646635	G	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	152121637	152121638	chr3:152121638:C:T	rs472976	C	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	152186247	152186248	chr3:152186248:T:A	rs10513405	T	A	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	152241720	152241721	chr3:152241721:G:C	rs12495887	G	C	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	152269833	152269834	chr3:152269834:A:G	rs77426051	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	152332898	152332899	chr3:152332899:T:C	rs146367172	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	152379957	152379958	chr3:152379958:C:T	rs78959658	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	152425664	152425665	chr3:152425665:A:G	rs34761467	A	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr3	152977604	152977605	chr3:152977605:C:A	rs1916280	C	A	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	153410428	153410429	chr3:153410429:G:C	rs2862826	G	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	153429822	153429823	chr3:153429823:A:G	rs62276379	A	G	A	Sox1.mouse_HMG_2	7	1	-	6.51274468349622	6.973689137203325	ATGAATATTATTCTA
chr3	153624552	153624553	chr3:153624553:A:T	rs762369763	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	153624567	153624568	chr3:153624568:A:C	rs6799174	A	C	C	Sox1.mouse_HMG_2	10	1	-	6.09614530396963	3.3435477882445315	AGAAATGCCATTCAT
chr3	153753589	153753590	chr3:153753590:T:A	rs531369	T	A	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr3	153885504	153885505	chr3:153885505:A:G	rs16823270	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.6278222184282	-2.1935905507318716	ATGAAGAACATTTAA
chr3	154037536	154037537	chr3:154037537:G:A	rs7427351	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	154382350	154382351	chr3:154382351:G:T	rs16823939	G	T	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	154482264	154482265	chr3:154482265:G:C	rs59029172	G	C	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	154584248	154584249	chr3:154584249:A:G	rs148713668	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.6847279950337235	-2.2240267842814965	GTGACTTCCATTAAA
chr3	154939689	154939690	chr3:154939690:A:G	rs76250801	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	155071514	155071515	chr3:155071515:G:C	rs41515653	G	C	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	155111502	155111503	chr3:155111503:T:C	rs7649252	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	155424507	155424508	chr3:155424508:T:C	rs13081656	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	155498030	155498031	chr3:155498031:A:G	rs3942389	A	G	G	Sox1.mouse_HMG_2	4	1	+	4.652073591596349	-2.169339177563723	TTGTATGCCATTCTT
chr3	155704429	155704430	chr3:155704430:A:T	rs9866635	A	T	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	156633928	156633929	chr3:156633929:T:A	rs9865431	T	A	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr3	156639538	156639539	chr3:156639539:T:C	rs11926561	T	C	C	Sox1.mouse_HMG_2	7	1	-	4.6149119841534025	3.9138571646123266	CTGACTTACATTTTG
chr3	156659938	156659939	chr3:156659939:A:G	rs912669463	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	156866034	156866035	chr3:156866035:C:T	rs7625660	C	T	C	Sox1.mouse_HMG_2	7	1	+	3.121404780439944	2.660460326732837	ATGAAAACCAGTCTG
chr3	156891585	156891586	chr3:156891586:G:A	rs6787952	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	157375570	157375571	chr3:157375571:A:G	rs12637261	A	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	157472206	157472207	chr3:157472207:A:G	rs67118252	A	G	A	Sox1.mouse_HMG_2	10	1	+	4.894615672814193	8.989959735369377	TTGAATAAAAATCAT
chr3	157668132	157668133	chr3:157668133:G:A	rs73873917	G	A	G	Sox1.mouse_HMG_2	1	1	+	4.058362601245911	4.362833780324485	AGGAGTTTCATTCAT
chr3	157832711	157832712	chr3:157832712:G:A	rs76733055	G	A	G	Sox1.mouse_HMG_2	9	1	+	3.278998008215699	10.187752787530918	AAGAATTGCGTTCAG
chr3	158626043	158626044	chr3:158626044:C:T	rs1845139	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	158661611	158661612	chr3:158661612:C:T	rs9872962	C	T	C	Sox1.mouse_HMG_2	9	1	+	7.570996789159151	7.570996789159151	TTGAATTCCCTTCAC
chr3	158759072	158759073	chr3:158759073:A:G	rs6775607	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	158811327	158811328	chr3:158811328:G:A	rs12493280	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	158912137	158912138	chr3:158912138:C:T	rs340226	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	159173690	159173691	chr3:159173691:G:A	rs35582286	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr3	159310898	159310899	chr3:159310899:C:T	rs2595253	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	160183781	160183782	chr3:160183782:A:G	rs185568306	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.611420513440021	-1.334697174332627	CTGAGTAGAATTCAC
chr3	160477940	160477941	chr3:160477941:T:C	rs13314803	T	C	t	Sox1.mouse_HMG_2	13	1	-	5.789018899465192	0.8429012116925434	CTCACTGGCATTCAG
chr3	160561622	160561623	chr3:160561623:G:A	rs4679894	G	A	G	Sox1.mouse_HMG_2	2	1	+	9.300409322096455	4.655006789080239	ATGAATAACTTTCAA
chr3	160641892	160641893	chr3:160641893:G:C	rs76877180	G	C	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	160641922	160641923	chr3:160641923:A:G	rs4635753	A	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	160707604	160707605	chr3:160707605:A:T	rs73877940	A	T	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	160893539	160893540	chr3:160893540:T:G	rs1374789	T	G	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	161221141	161221142	chr3:161221142:C:T	chr3:161221142:C:T	C	T	C	Sox1.mouse_HMG_2	14	1	+	5.620977803071875	6.495590145794611	CTGAAAAGCAGTCAC
chr3	161221158	161221159	chr3:161221159:C:G	rs1331678370	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr3	161271308	161271309	chr3:161271309:T:A	chr3:161271309:T:A	T	A	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	161550660	161550661	chr3:161550661:G:T	rs7625098	G	T	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	161551729	161551730	chr3:161551730:T:C	rs6797876	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	161781780	161781781	chr3:161781781:G:A	rs10936238	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	162166218	162166219	chr3:162166219:C:A	chr3:162166219:C:A	C	A	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	162228831	162228832	chr3:162228832:T:C	rs13314269	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	162743102	162743103	chr3:162743103:A:G	rs2201659	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	162777359	162777360	chr3:162777360:A:G	rs206894	A	G	g	Sox1.mouse_HMG_2	10	1	-	4.505354161242248	-2.342587417038034	ATGAAAGACATTTAT
chr3	162966067	162966068	chr3:162966068:C:T	rs10212444	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	163180822	163180823	chr3:163180823:T:C	rs1873643	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	163315764	163315765	chr3:163315765:C:A	rs60914031	C	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr3	163523328	163523329	chr3:163523329:C:T	rs34183566	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	163780062	163780063	chr3:163780063:A:G	rs34065866	A	G	A	Sox1.mouse_HMG_2	10	1	-	6.545729138644505	-0.30221243963577515	ATGACTTTCATTAAT
chr3	163881148	163881149	chr3:163881149:G:T	rs4855200	G	T	T	Sox1.mouse_HMG_2	1	1	+	5.999163889652776	10.947627376224586	TGGAATAATATTCAT
chr3	164049390	164049391	chr3:164049391:T:G	rs10936394	T	G	G	Sox1.mouse_HMG_2	1	1	+	4.221265519297502	-0.7271979672743062	GTCGATAACATTCAT
chr3	164186361	164186362	chr3:164186362:A:C	rs788899	A	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	164186405	164186406	chr3:164186406:G:C	rs788898	G	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	164423903	164423904	chr3:164423904:G:C	rs7340644	G	C	g	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	165464691	165464692	chr3:165464692:A:G	rs62293358	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	165742431	165742432	chr3:165742432:G:C	chr3:165742432:G:C	G	C	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	165836432	165836433	chr3:165836433:A:G	rs4599347	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.910992696891866	0.2670003893986329	ATGAATATATTTCAT
chr3	167084884	167084885	chr3:167084885:A:G	rs57102294	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.941846538188605	-1.9669082411266143	AAGAATTACAGTCTG
chr3	167106157	167106158	chr3:167106158:G:C	rs953316	G	C	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	167246284	167246285	chr3:167246285:T:A	rs9681183	T	A	T	Sox1.mouse_HMG_2	9	1	-	4.56092326836131	-2.347831510953911	TAGAATGACAGTCTT
chr3	167651340	167651341	chr3:167651341:A:G	rs2420024	A	G	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr3	167862645	167862646	chr3:167862646:A:C	rs7618769	A	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	167862672	167862673	chr3:167862673:C:A	rs7651786	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr3	167866422	167866423	chr3:167866423:T:C	rs3811682	T	C	c	Sox1.mouse_HMG_2	9	1	-	5.901995480050736	-1.0067592992644847	TAGAATTTCATTCTG
chr3	168021983	168021984	chr3:168021984:C:T	rs73174976	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	168091840	168091841	chr3:168091841:A:C	rs67748432	A	C	a	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	168230455	168230456	chr3:168230456:T:G	rs9855657	T	G	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	168230577	168230578	chr3:168230578:G:A	rs9836029	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr3	168323058	168323059	chr3:168323059:G:T	rs71304676	G	T	g	Sox1.mouse_HMG_2	7	1	-	5.161325904481838	5.558010625149907	TGAAATGCCATTCAT
chr3	168472933	168472934	chr3:168472934:G:T	rs329076	G	T	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	168484655	168484656	chr3:168484656:A:T	rs186635	A	T	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	169009173	169009174	chr3:169009174:C:T	rs13094284	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	169021529	169021530	chr3:169021530:A:G	rs377189214	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	169041874	169041875	chr3:169041875:C:T	rs77596263	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	169104687	169104688	chr3:169104688:A:G	rs188437947	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	169104713	169104714	chr3:169104714:C:T	rs535856445	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.573780637589249	-0.09880646607900587	ATGACTATTATTCTC
chr3	169144577	169144578	chr3:169144578:A:G	rs17468502	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	169166035	169166036	chr3:169166036:C:T	rs6805301	C	T	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	169455881	169455882	chr3:169455882:G:A	rs10804833	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	169478081	169478082	chr3:169478082:C:G	rs78873505	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	169515390	169515391	chr3:169515391:C:T	rs7613029	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	169666412	169666413	chr3:169666413:T:C	rs116153715	T	C	t	Sox1.mouse_HMG_2	7	1	+	5.661633463381743	6.122577917088848	CTCAATATCATTCGT
chr3	169813142	169813143	chr3:169813143:A:T	rs114194153	A	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	169941593	169941594	chr3:169941594:T:A	rs960354	T	A	c	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	170006192	170006193	chr3:170006193:T:C	rs2421900	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	170200522	170200523	chr3:170200523:T:G	rs1625949	T	G	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	170323676	170323677	chr3:170323677:C:T	rs113008638	C	T	c	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	170467040	170467041	chr3:170467041:C:A	rs375072818	C	A	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	170599014	170599015	chr3:170599015:T:C	rs186169046	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	170599282	170599283	chr3:170599283:G:A	rs75971282	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	170614456	170614457	chr3:170614457:G:C	rs1553111	G	C	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr3	170629524	170629525	chr3:170629525:G:A	rs4955742	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	171133114	171133115	chr3:171133115:A:C	rs7373295	A	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	171461595	171461596	chr3:171461596:A:G	rs73032126	A	G	A	Sox1.mouse_HMG_2	13	1	-	7.025567848195344	3.8992153922242894	CAGAATTACATTCTG
chr3	171789366	171789367	chr3:171789367:C:A	rs4243418	C	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	172050283	172050284	chr3:172050284:A:G	rs9290439	A	G	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	172061975	172061976	chr3:172061976:A:G	rs78299545	A	G	a	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	172074719	172074720	chr3:172074720:C:G	rs916031184	C	G	C	Sox1.mouse_HMG_2	4	1	+	6.889183175110951	2.4498314738178006	ATAACTATCAGTCAT
chr3	172136379	172136380	chr3:172136380:G:A	rs7616583	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	172173941	172173942	chr3:172173942:G:A	rs7653441	G	A	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr3	172201766	172201767	chr3:172201767:T:G	rs1031822885	T	G	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	172225120	172225121	chr3:172225121:T:G	rs79676570	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr3	172270897	172270898	chr3:172270898:T:C	rs73029379	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	172270916	172270917	chr3:172270917:T:C	rs77351096	T	C	T	Sox1.mouse_HMG_2	14	1	+	8.808230855186471	7.9336185124637355	TTGAATGCCAGTCTT
chr3	172423882	172423883	chr3:172423883:A:G	rs512721	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	172520413	172520414	chr3:172520414:G:A	rs6777176	G	A	G	Sox1.mouse_HMG_2	4	1	-	3.707685000299888	-0.7316667009932638	AGGACTGGCATTCTG
chr3	172600234	172600235	chr3:172600235:T:A	rs6783761	T	A	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr3	172660640	172660641	chr3:172660641:T:G	rs186123361	T	G	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	172857329	172857330	chr3:172857330:A:G	rs141070580	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	172894738	172894739	chr3:172894739:C:A	rs2861040	C	A	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr3	173061856	173061857	chr3:173061857:T:C	rs7631047	T	C	C	Sox1.mouse_HMG_2	0	1	-	8.625383923048794	7.621147690413594	ATGAATATAATTCTT
chr3	173065880	173065881	chr3:173065881:C:T	rs6784377	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	173065929	173065930	chr3:173065930:G:A	rs1399750	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	173284483	173284484	chr3:173284484:C:T	rs1160481824	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	173401587	173401588	chr3:173401588:G:A	rs488029	G	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr3	173588978	173588979	chr3:173588979:A:T	rs112626485	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	173617352	173617353	chr3:173617353:T:A	rs77592068	T	A	T	Sox1.mouse_HMG_2	1	1	+	3.6498345896688917	-0.9941577178243403	ATCTATAGCATTCAC
chr3	173814732	173814733	chr3:173814733:T:G	rs9868337	T	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr3	173970737	173970738	chr3:173970738:A:C	rs1451145206	A	C	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	174154008	174154009	chr3:174154009:T:C	rs7610242	T	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	174202676	174202677	chr3:174202677:A:T	rs9843486	A	T	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	174338470	174338471	chr3:174338471:T:C	rs1356812	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	174346775	174346776	chr3:174346776:A:G	rs1520157	A	G	A	Sox1.mouse_HMG_2	7	1	-	4.447620999192374	4.90856545289948	CAGAAAATCATTCAT
chr3	174399675	174399676	chr3:174399676:G:C	rs9862192	G	C	G	Sox1.mouse_HMG_2	1	1	-	2.9925022488103172	2.6880310697317427	ACGAATGCCATTAAG
chr3	174776482	174776483	chr3:174776483:A:G	rs146065168	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	174861450	174861451	chr3:174861451:G:A	rs67913531	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr3	174865380	174865381	chr3:174865381:G:T	rs11922249	G	T	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	175094800	175094801	chr3:175094801:A:G	rs6791022	A	G	a	Sox1.mouse_HMG_2	1	1	-	4.099079653674418	-0.5449126538188146	ATGTATAATATTCAC
chr3	175151575	175151576	chr3:175151576:T:G	rs2861996	T	G	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	175153894	175153895	chr3:175153895:T:C	rs1563946	T	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	175199209	175199210	chr3:175199210:C:A	rs9883893	C	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	175267670	175267671	chr3:175267671:C:T	rs113476271	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	175267672	175267673	chr3:175267673:T:G	rs62285941	T	G	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	175267720	175267721	chr3:175267721:C:T	rs56273725	C	T	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	175344291	175344292	chr3:175344292:G:A	rs6794039	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	175521843	175521844	chr3:175521844:T:C	rs145502001	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.415240135849352	-2.493514643465869	ACAACTGACATTCAT
chr3	175601357	175601358	chr3:175601358:T:C	rs11710630	T	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr3	175729757	175729758	chr3:175729758:T:A	rs5017491	T	A	T	Sox1.mouse_HMG_2	3	1	-	5.17719854177157	-1.7315562375436513	CTGAATTAAATTTAA
chr3	176345120	176345121	chr3:176345121:A:G	rs7630470	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	177115441	177115442	chr3:177115442:A:G	rs1795230	A	G	g	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	177150264	177150265	chr3:177150265:T:C	rs7632766	T	C	T	Sox1.mouse_HMG_2	14	1	-	8.55694397212647	8.721585220021417	TTGAATACCATTCCA
chr3	177193682	177193683	chr3:177193683:T:C	rs10936936	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	177234279	177234280	chr3:177234280:T:C	rs12486925	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	177341962	177341963	chr3:177341963:G:A	rs73171194	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	177370367	177370368	chr3:177370368:C:G	rs6443452	C	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	177447007	177447008	chr3:177447008:C:T	rs73173164	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	177485196	177485197	chr3:177485197:T:C	rs2173622	T	C	T	Sox1.mouse_HMG_2	13	1	-	3.721424355156429	-1.2246933326162193	ATTAAGAACATTCAT
chr3	177650694	177650695	chr3:177650695:A:G	rs150753622	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.655006789080239	3.6507705564450372	ATATATAACATTCAA
chr3	177653097	177653098	chr3:177653098:T:C	rs7637077	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	177830710	177830711	chr3:177830711:A:G	rs75596517	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	177832843	177832844	chr3:177832844:C:T	chr3:177832844:C:T	C	T	C	Sox1.mouse_HMG_2	5	1	+	7.836939982928581	14.745694762243806	CTGAACTCCATTCAC
chr3	177835255	177835256	chr3:177835256:G:A	rs77175887	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	178004140	178004141	chr3:178004141:A:T	rs56965193	A	T	T	Sox1.mouse_HMG_2	5	1	+	2.8955647657761237	9.804319545091344	ATGAAAAACACTCAC
chr3	178079040	178079041	chr3:178079041:C:T	rs996536	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	178174360	178174361	chr3:178174361:T:C	rs75380256	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	178387552	178387553	chr3:178387553:G:T	rs282875	G	T	T	Sox1.mouse_HMG_2	2	1	+	5.787880914591983	-1.1088134170307304	TTGAAAAGCATTCTT
chr3	178435798	178435799	chr3:178435799:A:G	rs282876	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	178435825	178435826	chr3:178435826:C:A	rs147956842	C	A	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	178444126	178444127	chr3:178444127:G:T	rs282885	G	T	G	Sox1.mouse_HMG_2	1	1	-	3.74426043893375	3.74426043893375	GCTAATTCCATTCAT
chr3	178790485	178790486	chr3:178790486:T:C	rs567729554	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	178956141	178956142	chr3:178956142:C:G	rs7643052	C	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr3	179348665	179348666	chr3:179348666:T:C	rs36077761	T	C	T	Sox1.mouse_HMG_2	7	1	+	4.822849507960683	5.28379396166779	TGAAATATCATTCAA
chr3	179451715	179451716	chr3:179451716:C:T	rs116880111	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	179614005	179614006	chr3:179614006:A:G	rs183664286	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	179889397	179889398	chr3:179889398:G:C	rs3774247	G	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr3	179929432	179929433	chr3:179929433:G:A	rs4627753	G	A	A	Sox1.mouse_HMG_2	2	1	+	4.435649942651134	-0.20975259036508287	CTGTATTACATTTAT
chr3	180527944	180527945	chr3:180527945:A:C	rs77466428	A	C	C	Sox1.mouse_HMG_2	10	1	-	7.235681104799782	4.483083589074685	CTGACTTCAATTCAG
chr3	180678711	180678712	chr3:180678712:G:A	rs13083968	G	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	181328689	181328690	chr3:181328690:C:A	rs12633750	C	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	181399685	181399686	chr3:181399686:G:A	rs6804481	G	A	A	Sox1.mouse_HMG_2	8	1	-	3.830152183154356	-1.8142745072276294	ATGAACTACAGTCTT
chr3	181736203	181736204	chr3:181736204:C:A	rs80105037	C	A	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr3	182237906	182237907	chr3:182237907:T:C	rs7639661	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr3	182365367	182365368	chr3:182365368:T:C	rs115589252	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	182608937	182608938	chr3:182608938:A:G	rs1463444	A	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	182730109	182730110	chr3:182730110:A:G	rs77677259	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	182753336	182753337	chr3:182753337:A:G	rs2717273	A	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	182793063	182793064	chr3:182793064:A:G	rs551888520	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.238745998159029	-2.670008781156191	TTAACTTTCAGTCAC
chr3	182793078	182793079	chr3:182793079:C:A	rs6791488	C	A	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr3	182803338	182803339	chr3:182803339:C:T	rs12696497	C	T	T	Sox1.mouse_HMG_2	14	1	+	8.892133373690259	9.766745716412993	CTCAATTTCATTCAC
chr3	182803354	182803355	chr3:182803355:G:T	rs12696498	G	T	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	182936765	182936766	chr3:182936766:C:A	rs6443837	C	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr3	183506976	183506977	chr3:183506977:T:C	rs79762338	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr3	183516887	183516888	chr3:183516888:A:G	rs56296700	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	183816698	183816699	chr3:183816699:G:C	rs2606225	G	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	183816705	183816706	chr3:183816706:G:T	rs2606226	G	T	G	Sox1.mouse_HMG_2	14	1	-	5.245197949148084	4.802100927188134	ATGACTCACATTTAC
chr3	183941674	183941675	chr3:183941675:A:T	rs6804242	A	T	T	Sox1.mouse_HMG_2	6	1	-	7.677511632281502	8.518517067022897	CTGAATTGCATTCCA
chr3	184141150	184141151	chr3:184141151:A:C	rs865808	A	C	t	Sox1.mouse_HMG_2	10	1	-	7.267455960638707	4.51485844491361	TGGACTTACATTCAG
chr3	184345909	184345910	chr3:184345910:G:A	rs571039551	G	A	g	Sox1.mouse_HMG_2	4	1	+	5.508449526705352	12.329862295865423	GTGAGTGACAGTCAT
chr3	184402934	184402935	chr3:184402935:A:G	rs7611080	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	184449794	184449795	chr3:184449795:C:T	rs12496289	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr3	184517710	184517711	chr3:184517711:C:T	rs62287369	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	184538799	184538800	chr3:184538800:G:C	rs76777348	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	184540415	184540416	chr3:184540416:C:T	rs6793329	C	T	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	184543440	184543441	chr3:184543441:C:T	rs77690171	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr3	185024671	185024672	chr3:185024672:A:G	rs73885641	A	G	A	Sox1.mouse_HMG_2	7	1	-	7.88164093704603	8.342585390753138	GTGAATATCTTTCAC
chr3	185120306	185120307	chr3:185120307:A:C	rs73190986	A	C	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr3	185120320	185120321	chr3:185120321:G:A	rs73887815	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr3	185729525	185729526	chr3:185729526:G:A	rs78095050	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	186141967	186141968	chr3:186141968:A:G	rs6444108	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	186207720	186207721	chr3:186207721:C:T	rs7623188	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	186354225	186354226	chr3:186354226:C:T	rs62290691	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr3	186487939	186487940	chr3:186487940:T:C	rs9844915	T	C	C	Sox1.mouse_HMG_2	5	1	+	3.4893865516579896	-3.4193682276572295	ATGACTTACAGGCAG
chr3	186495994	186495995	chr3:186495995:A:G	rs11918665	A	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr3	186606348	186606349	chr3:186606349:A:C	rs55727368	A	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	186757658	186757659	chr3:186757659:T:C	rs61605278	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	186771934	186771935	chr3:186771935:T:C	rs266731	T	C	.	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr3	186787916	186787917	chr3:186787917:A:C	rs12630327	A	C	.	Sox1.mouse_HMG_2	9	1	+	4.833802471779252	-2.0749523075359684	TTGAAAAAAATTCAT
chr3	186827054	186827055	chr3:186827055:C:T	rs528651826	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.615912006974878	-1.0285146834071075	TTGGATGACAGTCAC
chr3	186840082	186840083	chr3:186840083:A:G	rs76071583	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr3	186956738	186956739	chr3:186956739:G:A	rs9826667	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	187031655	187031656	chr3:187031656:G:A	rs4012164	G	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr3	187031663	187031664	chr3:187031664:A:G	rs28412033	A	G	A	Sox1.mouse_HMG_2	3	1	+	5.6361517058624235	-1.2726030734527978	CTGACTTCAAGTCAT
chr3	187039119	187039120	chr3:187039120:T:G	rs2268536	T	G	T	Sox1.mouse_HMG_2	11	1	+	4.180300991536429	-2.728453787778791	CTGTATTTCAGTCAA
chr3	187041141	187041142	chr3:187041142:G:C	rs9847687	G	C	C	Sox1.mouse_HMG_2	11	1	+	6.152458070230042	6.152458070230042	ATGAATACCATGCTC
chr3	187082790	187082791	chr3:187082791:C:G	rs67628123	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	187183210	187183211	chr3:187183211:A:G	rs12491229	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr3	187229053	187229054	chr3:187229054:G:A	rs850319	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	187648315	187648316	chr3:187648316:T:C	rs144623715	T	C	T	Sox1.mouse_HMG_2	13	1	-	3.115949288352194	-1.830168399420454	CTGACTTTCAGACAT
chr3	187741174	187741175	chr3:187741175:A:G	chr3:187741175:A:G	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr3	187741212	187741213	chr3:187741213:T:C	chr3:187741213:T:C	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr3	187748053	187748054	chr3:187748054:G:T	rs60757451	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr3	187748102	187748103	chr3:187748103:C:G	chr3:187748103:C:G	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr3	188159119	188159120	chr3:188159120:A:C	rs10937342	A	C	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	188159124	188159125	chr3:188159125:G:C	rs143865772	G	C	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr3	188286086	188286087	chr3:188286087:T:C	rs77972081	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	188482708	188482709	chr3:188482709:T:A	rs74941116	T	A	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	188562639	188562640	chr3:188562640:G:A	rs13093461	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr3	188635974	188635975	chr3:188635975:G:T	rs16863480	G	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	188689302	188689303	chr3:188689303:A:G	rs372240989	A	G	a	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	188689348	188689349	chr3:188689349:C:T	rs77618664	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr3	188911560	188911561	chr3:188911561:G:C	rs188496785	G	C	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	188915139	188915140	chr3:188915140:T:G	rs143127091	T	G	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	189428805	189428806	chr3:189428806:G:A	rs17425644	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.281050386342663	1.6084632826744074	TTGAATTCCAGTCCT
chr3	189455882	189455883	chr3:189455883:C:T	rs6791867	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	189502129	189502130	chr3:189502130:G:T	rs9858349	G	T	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr3	189562847	189562848	chr3:189562848:G:A	rs9859170	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	189842827	189842828	chr3:189842828:A:G	rs13326685	A	G	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	189868392	189868393	chr3:189868393:A:G	rs1399774	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr3	189945437	189945438	chr3:189945438:A:G	rs12629982	A	G	A	Sox1.mouse_HMG_2	13	1	+	8.536275923962833	3.5901582361901845	GTGACTTTCAGTCAG
chr3	189945595	189945596	chr3:189945596:T:G	rs4687112	T	G	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr3	189977079	189977080	chr3:189977080:C:T	rs56153306	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr3	190038124	190038125	chr3:190038125:T:C	rs1666391	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	190201217	190201218	chr3:190201218:G:A	rs9877609	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr3	190385013	190385014	chr3:190385014:C:A	rs17444719	C	A	C	Sox1.mouse_HMG_2	14	1	-	3.583368107088706	4.736436223876445	AAGAACTCCATTCAG
chr3	190447050	190447051	chr3:190447051:C:G	rs78113860	C	G	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	190716363	190716364	chr3:190716364:A:C	rs7652924	A	C	C	Sox1.mouse_HMG_2	11	1	-	3.020369535615354	-3.8883852436998656	ATTAATAGCTTTCAT
chr3	190720334	190720335	chr3:190720335:T:C	rs147591885	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.1356437515182165	-2.7731110277970026	TTGAATGCCAGTTTT
chr3	190809637	190809638	chr3:190809638:C:A	rs6778588	C	A	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr3	190825601	190825602	chr3:190825602:A:C	rs9862492	A	C	A	Sox1.mouse_HMG_2	13	1	+	5.409968210446929	-0.9107477986824181	TGCAATTACATTCAT
chr3	191136501	191136502	chr3:191136502:G:T	rs6788488	G	T	G	Sox1.mouse_HMG_2	12	1	-	6.679015761184601	-0.22143288928176197	TTTAATTTCATTCAA
chr3	191314128	191314129	chr3:191314129:T:C	rs293868	T	C	C	Sox1.mouse_HMG_2	11	1	+	4.098177461935856	-2.810577317379364	TTGAATTCCCTTCTG
chr3	191350295	191350296	chr3:191350296:A:G	rs76001579	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	191369357	191369358	chr3:191369358:C:T	rs4677725	C	T	T	Sox1.mouse_HMG_2	14	1	-	10.053089340177277	9.88844809228233	ATGAATAACATTCCG
chr3	191393370	191393371	chr3:191393371:A:G	rs9841435	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr3	191743571	191743572	chr3:191743572:T:A	rs731309	T	A	T	Sox1.mouse_HMG_2	5	1	+	10.03642384876988	3.127669069454657	CTGAATAACAGTCTC
chr3	192054803	192054804	chr3:192054804:G:T	rs4687285	G	T	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	192860071	192860072	chr3:192860072:T:C	rs35808730	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	192888429	192888430	chr3:192888430:C:T	rs116497731	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr3	193028465	193028466	chr3:193028466:C:T	rs11713776	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	193259106	193259107	chr3:193259107:T:C	rs10460912	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.430694753444525	0.7867024459512914	ATAAATATGATTCAC
chr3	193400490	193400491	chr3:193400491:G:A	rs3732525	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr3	193680212	193680213	chr3:193680213:T:A	rs6444738	T	A	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr3	193732705	193732706	chr3:193732706:C:G	rs190138068	C	G	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr3	193744270	193744271	chr3:193744271:C:T	rs79279206	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr3	193774060	193774061	chr3:193774061:A:T	rs9854346	A	T	A	Sox1.mouse_HMG_2	6	1	-	3.554773310913683	4.395778745655078	ATGAAATCCATTTAG
chr3	193894780	193894781	chr3:193894781:C:T	rs79744420	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr3	194069985	194069986	chr3:194069986:C:T	rs12487368	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr3	194070005	194070006	chr3:194070006:A:G	rs58633572	A	G	A	Sox1.mouse_HMG_2	9	1	+	8.530231170503612	1.6214763911883914	TTGCATAACATTCAG
chr3	194073199	194073200	chr3:194073200:T:A	rs4687508	T	A	T	Sox1.mouse_HMG_2	0	1	+	8.194974135182688	9.129793534670478	TTGATTAGCATTCAC
chr3	194078708	194078709	chr3:194078709:T:C	rs1873412	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr3	194080617	194080618	chr3:194080618:G:A	rs56786036	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	194080660	194080661	chr3:194080661:G:T	rs58457173	G	T	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr3	194111792	194111793	chr3:194111793:C:T	rs9829944	C	T	c	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr3	194152665	194152666	chr3:194152666:G:C	rs6796328	G	C	C	Sox1.mouse_HMG_2	0	1	+	3.5678161750813384	3.903176201998182	GTGAATTTCCTTCTG
chr3	194330219	194330220	chr3:194330220:C:T	rs143347353	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr3	194353093	194353094	chr3:194353094:C:A	rs34234514	C	A	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	194527305	194527306	chr3:194527306:A:G	rs137859693	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	194527306	194527307	chr3:194527307:C:A	rs7373647	C	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr3	194527335	194527336	chr3:194527336:G:A	rs55861992	G	A	g	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr3	194671341	194671342	chr3:194671342:T:A	rs7651926	T	A	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr3	194672999	194673000	chr3:194673000:T:G	rs199951778	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.703901123521516	-0.24456236305029186	GTGAACTACATTCTC
chr3	194708783	194708784	chr3:194708784:T:C	rs76028542	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	194830338	194830339	chr3:194830339:T:C	rs4677757	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr3	194847170	194847171	chr3:194847171:A:G	rs56823724	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.056482847219156	-1.7914587310611245	GTGACCATCATTCAA
chr3	194906452	194906453	chr3:194906453:A:T	rs74448326	A	T	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	194949000	194949001	chr3:194949001:G:T	rs62291545	G	T	G	Sox1.mouse_HMG_2	8	1	-	5.171226369450374	0.32172955393827507	TTGAATAACATGCTA
chr3	194949001	194949002	chr3:194949002:T:G	rs62291546	T	G	T	Sox1.mouse_HMG_2	7	1	-	5.171226369450374	4.7745416487823045	TTGAATAACATGCTA
chr3	194984425	194984426	chr3:194984426:A:G	rs2676846	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr3	194989177	194989178	chr3:194989178:T:G	rs2676853	T	G	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr3	195003538	195003539	chr3:195003539:C:T	rs56174451	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr3	195041512	195041513	chr3:195041513:C:T	rs146263692	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	195079832	195079833	chr3:195079833:T:C	rs6767698	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr3	195098241	195098242	chr3:195098242:T:A	rs56371459	T	A	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr3	195119423	195119424	chr3:195119424:C:T	rs150294037	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr3	195129863	195129864	chr3:195129864:T:G	rs1029867992	T	G	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	195195584	195195585	chr3:195195585:G:A	rs73890732	G	A	g	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr3	195195615	195195616	chr3:195195616:A:C	rs78459297	A	C	a	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr3	195195672	195195673	chr3:195195673:C:T	rs78994626	C	T	c	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	195477244	195477245	chr3:195477245:T:C	rs1873968	T	C	.	Sox1.mouse_HMG_2	3	1	-	7.518740541752129	0.6099857624369062	TTGAATAACAGTCCT
chr3	195513873	195513874	chr3:195513874:T:C	rs823499	T	C	.	Sox1.mouse_HMG_2	1	1	+	6.69399736462975	2.0500050571365165	ATGACATGCATTCAT
chr3	195584878	195584879	chr3:195584879:G:A	rs17838868	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	195696642	195696643	chr3:195696643:G:C	rs536769676	G	C	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr3	195696652	195696653	chr3:195696653:G:A	rs12330794	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	195711608	195711609	chr3:195711609:A:C	rs2641761	A	C	C	Sox1.mouse_HMG_2	14	1	+	9.423838472303158	9.866935494263108	AGGAATGCCATTCAA
chr3	195727659	195727660	chr3:195727660:G:A	rs115400399	G	A	N	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr3	195746748	195746749	chr3:195746749:A:G	rs712006	A	G	-	Sox1.mouse_HMG_2	13	1	-	8.146356270954795	5.020003814983742	AGGAATTCCATTCTT
chr3	195903940	195903941	chr3:195903941:C:T	rs6784831	C	T	C	Sox1.mouse_HMG_2	0	1	-	4.58010132930851	5.584337561943713	GTAAATACCATTGAT
chr3	195954764	195954765	chr3:195954765:G:A	rs3844935	G	A	-	Sox1.mouse_HMG_2	8	1	-	11.29560988804806	5.651183197666072	GTGAATCACATTCAC
chr3	195959064	195959065	chr3:195959065:C:G	rs201672582	C	G	-	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr3	196180530	196180531	chr3:196180531:C:T	rs7374788	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr3	196194439	196194440	chr3:196194440:G:A	rs9325434	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr3	196278357	196278358	chr3:196278358:T:C	rs3772109	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr3	196413107	196413108	chr3:196413108:A:T	rs4916493	A	T	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr3	196501640	196501641	chr3:196501641:G:A	rs73219648	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr3	196533480	196533481	chr3:196533481:G:A	rs6583317	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr3	196600136	196600137	chr3:196600137:C:T	rs9858309	C	T	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr3	196990923	196990924	chr3:196990924:C:A	rs4916597	C	A	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr3	197040811	197040812	chr3:197040812:T:C	rs13070987	T	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr3	197179292	197179293	chr3:197179293:A:G	rs13319709	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr3	197216158	197216159	chr3:197216159:T:C	rs28524078	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr3	197278816	197278817	chr3:197278817:G:C	rs422203	G	C	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr3	197462963	197462964	chr3:197462964:C:T	rs547084082	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr3	197485852	197485853	chr3:197485853:C:T	rs9824358	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr3	197595870	197595871	chr3:197595871:T:C	rs73890770	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr3	197601343	197601344	chr3:197601344:T:C	rs6583239	T	C	.	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr3	197890049	197890050	chr3:197890050:C:A	rs6798260	C	A	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr3	197899363	197899364	chr3:197899364:T:A	rs7642725	T	A	A	Sox1.mouse_HMG_2	3	1	-	4.235573400496045	-2.673181378819175	TTGAATTGCTGTCAG
chr3	197958621	197958622	chr3:197958622:A:G	rs7374500	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	124755	124756	chr4:124756:T:C	rs116009033	T	C	T	Sox1.mouse_HMG_2	13	1	-	2.5531164694399306	-2.3930012183327176	GGGAACTCCATTCAC
chr4	482497	482498	chr4:482498:C:T	rs7692639	C	T	-	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	832001	832002	chr4:832002:T:C	rs190290437	T	C	-	Sox1.mouse_HMG_2	3	1	-	3.2415337151424564	-3.667221064172765	GTGACATCCAGTCAT
chr4	874077	874078	chr4:874078:T:C	rs764324	T	C	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr4	1278134	1278135	chr4:1278135:C:T	rs4974545	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	1291032	1291033	chr4:1291033:A:G	rs2178441	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	1299456	1299457	chr4:1299457:T:C	rs6819243	T	C	T	Sox1.mouse_HMG_2	11	1	+	4.634812797804246	-2.273941981510975	TTGAATAGCCTTCTG
chr4	1303471	1303472	chr4:1303472:T:C	rs58572555	T	C	t	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	1573230	1573231	chr4:1573231:C:T	rs114814748	C	T	C	Sox1.mouse_HMG_2	4	1	+	8.98296565332855	4.543613952035397	TTGACTCACATTCAC
chr4	1584840	1584841	chr4:1584841:G:T	rs11946466	G	T	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	1661472	1661473	chr4:1661473:C:T	rs76507605	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	1661483	1661484	chr4:1661484:G:A	rs80355600	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	2465474	2465475	chr4:2465475:A:G	rs3135149	A	G	G	Sox1.mouse_HMG_2	5	1	-	5.490524349697615	-1.4182304296176058	TTGAATGACAGACAT
chr4	2652119	2652120	chr4:2652120:A:C	rs2237002	A	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	3079761	3079762	chr4:3079762:A:G	rs113674085	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	3265929	3265930	chr4:3265930:C:T	rs995476154	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr4	3265935	3265936	chr4:3265936:A:G	rs140173617	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr4	3520211	3520212	chr4:3520212:T:A	rs1741547	T	A	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	4033050	4033051	chr4:4033051:G:C	rs9715096	G	C	-	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	4033058	4033059	chr4:4033059:G:T	rs9715097	G	T	-	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	4169646	4169647	chr4:4169647:A:G	rs62288357	A	G	-	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	4169652	4169653	chr4:4169653:T:C	rs28788174	T	C	-	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	4283537	4283538	chr4:4283538:T:A	rs4688927	T	A	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr4	4306452	4306453	chr4:4306453:C:T	rs894487	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	4392621	4392622	chr4:4392622:T:G	rs79805522	T	G	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	4490083	4490084	chr4:4490084:C:T	rs1992391	C	T	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	4850251	4850252	chr4:4850252:T:C	rs6819546	T	C	t	Sox1.mouse_HMG_2	9	1	-	5.967216623228697	-0.9415381560865216	TTGAATGACATTTTA
chr4	4850428	4850429	chr4:4850429:A:G	rs868256	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	4928778	4928779	chr4:4928779:T:C	rs10012063	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.701369473110175	-2.207385306205046	TTGAGTACCATTTAT
chr4	4936854	4936855	chr4:4936855:G:A	rs59364262	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	4936896	4936897	chr4:4936897:G:A	rs10030572	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	4963661	4963662	chr4:4963662:T:C	rs7692360	T	C	t	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	5163053	5163054	chr4:5163054:G:C	rs66471422	G	C	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	5167882	5167883	chr4:5167883:G:T	rs73210288	G	T	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	5324998	5324999	chr4:5324999:C:T	rs10028484	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	5444682	5444683	chr4:5444683:A:G	rs4459944	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	5464701	5464702	chr4:5464702:G:C	rs3774814	G	C	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	5636014	5636015	chr4:5636015:C:A	rs73794686	C	A	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	5647686	5647687	chr4:5647687:C:T	rs76191785	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	5929251	5929252	chr4:5929252:C:T	rs17694252	C	T	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	5968757	5968758	chr4:5968758:G:C	rs7672568	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	5973392	5973393	chr4:5973393:C:T	rs11733383	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	6001440	6001441	chr4:6001441:C:T	rs16838057	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	6032557	6032558	chr4:6032558:C:T	rs79258309	C	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	6112771	6112772	chr4:6112772:G:A	rs773585603	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	6114728	6114729	chr4:6114729:A:G	rs11930138	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.5596985008742927	-3.261714268285779	ATGAACTCCATTCGC
chr4	6155842	6155843	chr4:6155843:T:C	rs4383685	T	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	6155845	6155846	chr4:6155846:C:T	rs74738226	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	6175407	6175408	chr4:6175408:C:T	rs4689355	C	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	6361685	6361686	chr4:6361686:G:C	rs12647559	G	C	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	6438892	6438893	chr4:6438893:T:G	rs16838844	T	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	6679723	6679724	chr4:6679724:T:C	rs150041042	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	6687928	6687929	chr4:6687929:A:G	rs7696812	A	G	G	Sox1.mouse_HMG_2	13	1	+	9.552557760392714	4.606440072620066	CTGAAGACCATTCAT
chr4	6840022	6840023	chr4:6840023:A:G	rs35248705	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	7006350	7006351	chr4:7006351:T:G	rs10013211	T	G	T	Sox1.mouse_HMG_2	9	1	-	4.133246836179904	-2.7755079431353162	ATCAATAACAATCAG
chr4	7261475	7261476	chr4:7261476:T:C	rs34557121	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	7263907	7263908	chr4:7263908:G:A	rs867350	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	7275241	7275242	chr4:7275242:A:G	rs11726538	A	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	7275270	7275271	chr4:7275271:C:T	rs73206454	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.4359900645571715	0.7905875315409548	ATGACTTCGAGTCAT
chr4	7275271	7275272	chr4:7275272:A:G	rs11726541	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.4359900645571715	0.7919977570639373	ATGACTTCGAGTCAT
chr4	7303370	7303371	chr4:7303371:G:A	rs4689691	G	A	g	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	7309671	7309672	chr4:7309672:G:T	rs3846426	G	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	7407660	7407661	chr4:7407661:C:T	rs4689115	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	7559883	7559884	chr4:7559884:C:A	rs73214661	C	A	C	Sox1.mouse_HMG_2	5	1	+	6.69399736462975	6.69399736462975	ATGACCTGCATTCAT
chr4	7771967	7771968	chr4:7771968:G:A	rs114014983	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	7809041	7809042	chr4:7809042:A:G	rs116406388	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	7867987	7867988	chr4:7867988:T:A	rs115703160	T	A	T	Sox1.mouse_HMG_2	5	1	+	3.9565033965116196	-2.9522513828036	TTGAATGACACTCTG
chr4	7868004	7868005	chr4:7868005:C:T	rs114299003	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	7886167	7886168	chr4:7886168:G:A	rs35154266	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	7886176	7886177	chr4:7886177:G:A	rs35905776	G	A	G	Sox1.mouse_HMG_2	2	1	+	8.593275014701307	3.9478724816850885	TTGAATACAAGTCAT
chr4	7934877	7934878	chr4:7934878:C:T	rs7689238	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	7949036	7949037	chr4:7949037:T:C	rs5012708	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	7949216	7949217	chr4:7949217:G:A	rs76058854	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	7949237	7949238	chr4:7949238:A:C	rs4235268	A	C	C	Sox1.mouse_HMG_2	11	1	-	3.581767683931804	-3.3269870953834166	TGGAAAAACATTCAG
chr4	7949256	7949257	chr4:7949257:C:T	rs4235269	C	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	7989829	7989830	chr4:7989830:C:T	rs66787043	C	T	c	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	7989859	7989860	chr4:7989860:T:C	rs4696662	T	C	t	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	8266938	8266939	chr4:8266939:G:A	rs77641576	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	8266972	8266973	chr4:8266973:G:A	rs11727999	G	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr4	8277361	8277362	chr4:8277362:A:G	rs187737413	A	G	A	Sox1.mouse_HMG_2	6	1	+	9.248187661519706	7.808010239651068	CTGAAGAGCATTCAT
chr4	8336405	8336406	chr4:8336406:T:G	rs75512022	T	G	T	Sox1.mouse_HMG_2	10	1	+	4.522991952806282	1.7703944370811842	CTGAGTTACATTTAT
chr4	8539302	8539303	chr4:8539303:G:A	rs112084221	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	8547334	8547335	chr4:8547335:G:C	rs191333104	G	C	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	8586490	8586491	chr4:8586491:G:T	rs4696852	G	T	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	8587708	8587709	chr4:8587709:A:G	rs9799721	A	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	8780056	8780057	chr4:8780057:C:T	rs144433760	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	8913309	8913310	chr4:8913310:G:A	rs10046925	G	A	g	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	9381520	9381521	chr4:9381521:T:C	rs115761655	T	C	t	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr4	9453007	9453008	chr4:9453008:A:G	rs2091391	A	G	-	Sox1.mouse_HMG_2	1	1	-	7.830697926319237	3.186705618826002	CTGACTGTCATTCTG
chr4	9779873	9779874	chr4:9779874:T:G	rs538151019	T	G	t	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	9866968	9866969	chr4:9866969:A:T	rs939134	A	T	a	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	9883620	9883621	chr4:9883621:C:T	rs11737821	C	T	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	10182173	10182174	chr4:10182174:A:G	rs887728	A	G	a	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	10312125	10312126	chr4:10312126:A:G	rs10939835	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr4	10312132	10312133	chr4:10312133:T:G	rs12503603	T	G	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr4	10497719	10497720	chr4:10497720:T:C	rs12504795	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	11083907	11083908	chr4:11083908:C:T	rs6846943	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	11085831	11085832	chr4:11085832:T:C	rs6842230	T	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	11159039	11159040	chr4:11159040:A:C	rs12498472	A	C	C	Sox1.mouse_HMG_2	10	1	-	3.9466775487609453	1.1940800330358485	CTGGATAAAATTCAG
chr4	11312759	11312760	chr4:11312760:G:A	rs535397570	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	11368592	11368593	chr4:11368593:T:C	rs7680383	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	11471125	11471126	chr4:11471126:A:G	rs1465496306	A	G	A	Sox1.mouse_HMG_2	6	1	-	5.2995534379019755	1.7881438699550039	TGAAATTTCATTCAT
chr4	11471962	11471963	chr4:11471963:A:G	rs150033163	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.416599668812995	-2.492155110502224	ATCACTGGCATTCTT
chr4	11480743	11480744	chr4:11480744:A:G	rs73093380	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	11533010	11533011	chr4:11533011:G:A	rs10029570	G	A	A	Sox1.mouse_HMG_2	6	1	+	3.8262733623292693	5.266450784197909	GTGTATGACATTCTG
chr4	11735747	11735748	chr4:11735748:T:C	rs1388861	T	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	11840140	11840141	chr4:11840141:C:G	rs1492494	C	G	G	Sox1.mouse_HMG_2	8	1	+	5.025878892842243	-0.6926557696934643	ATTAATTTCAGTCAG
chr4	12077974	12077975	chr4:12077975:G:A	rs717376	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	12545576	12545577	chr4:12545577:G:A	rs6448920	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.846271949146341	-0.8263151545219142	GTGAATTTCCTTCTC
chr4	12912903	12912904	chr4:12912904:T:A	rs28505148	T	A	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	12922841	12922842	chr4:12922842:T:C	rs1513955	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	13212973	13212974	chr4:13212974:T:A	rs2903473	T	A	T	Sox1.mouse_HMG_2	9	1	-	4.0018409450933765	-2.9069138342218435	ATGATTAGAATTCAG
chr4	14088115	14088116	chr4:14088116:T:G	rs116541117	T	G	T	Sox1.mouse_HMG_2	3	1	-	5.228595177772187	-1.6801596015430342	CTGAATATCATTTGG
chr4	14198146	14198147	chr4:14198147:G:A	rs3096575	G	A	A	Sox1.mouse_HMG_2	14	1	-	4.365760948575803	5.240373291298539	TTGAATTTCAGTGAC
chr4	14234815	14234816	chr4:14234816:G:A	rs1365184	G	A	G	Sox1.mouse_HMG_2	10	1	+	7.164466351512969	3.0691222889577845	ATGAACAGCAGTCAT
chr4	14622410	14622411	chr4:14622411:A:G	rs7691072	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.647930299391663	-1.173482469768408	TTGAACTACATTCTT
chr4	14716693	14716694	chr4:14716694:A:G	rs75420187	A	G	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	14716703	14716704	chr4:14716704:G:A	rs78067842	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	14726627	14726628	chr4:14726628:T:C	rs11737830	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	14770427	14770428	chr4:14770428:T:C	rs73128642	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	14836270	14836271	chr4:14836271:T:C	rs73130638	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	14842021	14842022	chr4:14842022:T:C	rs147790673	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr4	14864018	14864019	chr4:14864019:G:A	rs11726698	G	A	A	Sox1.mouse_HMG_2	14	1	-	4.308004334370046	5.182616677092782	GGGAATTGAATTCAC
chr4	14864049	14864050	chr4:14864050:G:A	rs55779200	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	15038416	15038417	chr4:15038417:A:G	rs2702518	A	G	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	15131664	15131665	chr4:15131665:C:T	rs12512608	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	15131704	15131705	chr4:15131705:G:C	rs1455206	G	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	15240931	15240932	chr4:15240932:T:G	rs74684659	T	G	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	15261029	15261030	chr4:15261030:G:A	rs7690758	G	A	G	Sox1.mouse_HMG_2	9	1	-	3.9143577977669963	3.9143577977669963	TTGAATTTCCGTCAA
chr4	15316296	15316297	chr4:15316297:A:G	rs75346824	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	15332589	15332590	chr4:15332590:T:C	rs4698368	T	C	T	Sox1.mouse_HMG_2	10	1	+	12.487268245559473	5.639326667279193	GTGAATTACATTCTT
chr4	15374325	15374326	chr4:15374326:C:T	rs4355387	C	T	C	Sox1.mouse_HMG_2	7	1	+	5.380948934110445	4.920004480403339	TTGAAGACCAGTCAG
chr4	15546687	15546688	chr4:15546688:C:T	rs17476670	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	15598739	15598740	chr4:15598740:A:G	rs74799497	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	15894717	15894718	chr4:15894718:C:T	rs727488	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	15982320	15982321	chr4:15982321:C:T	rs73230225	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	16114212	16114213	chr4:16114213:A:G	rs78136291	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	16996501	16996502	chr4:16996502:T:A	rs67212838	T	A	T	Sox1.mouse_HMG_2	3	1	-	2.643802981077493	-4.264951798237725	CTGAAAACCCTTCAT
chr4	17030696	17030697	chr4:17030697:C:A	rs79212633	C	A	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	17030723	17030724	chr4:17030724:T:G	rs556678809	T	G	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	17504418	17504419	chr4:17504419:G:A	rs12645938	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	17516237	17516238	chr4:17516238:A:G	rs1551092	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.042073458116293	-2.866681321198929	CTGAATGCCAGCCAA
chr4	17559515	17559516	chr4:17559516:G:A	rs6828925	G	A	G	Sox1.mouse_HMG_2	3	1	-	4.2880379865795355	4.2880379865795355	GTGCATTTCAGTCAC
chr4	17939403	17939404	chr4:17939404:G:C	rs73098848	G	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr4	18048365	18048366	chr4:18048366:T:A	rs10516317	T	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	18322206	18322207	chr4:18322207:G:T	rs59374369	G	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	18390859	18390860	chr4:18390860:C:T	rs184397701	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	18390893	18390894	chr4:18390894:T:A	rs6848900	T	A	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	18636397	18636398	chr4:18636398:C:T	rs2320979	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr4	18733186	18733187	chr4:18733187:A:G	rs6449407	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.892150307361432	-0.9292624617986384	ATGAATAATATTTAA
chr4	18733189	18733190	chr4:18733190:A:G	rs6449408	A	G	G	Sox1.mouse_HMG_2	7	1	+	5.892150307361432	5.191095487820358	ATGAATAATATTTAA
chr4	19002339	19002340	chr4:19002340:G:A	chr4:19002340:G:A	G	A	g	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	19479483	19479484	chr4:19479484:C:G	rs62296709	C	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr4	19492811	19492812	chr4:19492812:C:T	rs4386602	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	19684567	19684568	chr4:19684568:G:A	rs7673978	G	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	19740094	19740095	chr4:19740095:C:G	rs13146601	C	G	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	20054146	20054147	chr4:20054147:G:T	rs6821740	G	T	g	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	20122545	20122546	chr4:20122546:G:A	rs184687689	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	20248335	20248336	chr4:20248336:T:C	rs755217550	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.5499928280928756	-1.0939994794003574	CTGAAGACAATTCAG
chr4	20249894	20249895	chr4:20249895:A:G	rs7663557	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	20256145	20256146	chr4:20256146:G:A	rs6831088	G	A	A	Sox1.mouse_HMG_2	12	1	-	8.958759836451735	4.286172732783482	AAGACTTGCATTCAT
chr4	20395461	20395462	chr4:20395462:C:T	rs7694498	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	20430733	20430734	chr4:20430734:C:A	rs60021161	C	A	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr4	20477494	20477495	chr4:20477495:A:G	rs475942	A	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	20543457	20543458	chr4:20543458:T:A	rs649424	T	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	20543468	20543469	chr4:20543469:A:G	rs3775825	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.5582989569417345	-3.350455822373486	CTGAATACAATTGAG
chr4	20618588	20618589	chr4:20618589:A:G	rs79934775	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	20683791	20683792	chr4:20683792:T:A	rs55787425	T	A	t	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	20839994	20839995	chr4:20839995:G:T	rs9996124	G	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	21455502	21455503	chr4:21455503:A:G	rs6843295	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr4	21703215	21703216	chr4:21703216:T:C	rs73256527	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.745487728367562	-2.1632670509476597	TTGAATAACATTGGT
chr4	21840278	21840279	chr4:21840279:C:T	rs925575	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr4	21845923	21845924	chr4:21845924:C:T	rs1398832	C	T	C	Sox1.mouse_HMG_2	2	1	+	8.712782809804468	7.208705413028195	CTCAATAACAGTCAT
chr4	22050885	22050886	chr4:22050886:T:C	rs13101318	T	C	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	22110906	22110907	chr4:22110907:C:A	rs7675542	C	A	A	Sox1.mouse_HMG_2	6	1	-	10.75105139264725	11.350223379774496	TTGACTGGCATTCAA
chr4	22110908	22110909	chr4:22110909:G:A	rs7675853	G	A	A	Sox1.mouse_HMG_2	4	1	-	10.75105139264725	6.311699691354098	TTGACTGGCATTCAA
chr4	22501595	22501596	chr4:22501596:T:C	rs114836610	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	22507729	22507730	chr4:22507730:T:C	rs7670164	T	C	T	Sox1.mouse_HMG_2	14	1	+	4.31335730343552	3.438744960712784	ACAACTTGCATTCAT
chr4	22596563	22596564	chr4:22596564:C:T	rs75709728	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	22597199	22597200	chr4:22597200:C:T	rs116918252	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	22715786	22715787	chr4:22715787:T:G	rs1485829	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	23169314	23169315	chr4:23169315:T:C	rs12649499	T	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	23355486	23355487	chr4:23355487:A:T	rs73092564	A	T	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	23378004	23378005	chr4:23378005:T:C	rs12505190	T	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr4	23383198	23383199	chr4:23383199:C:T	rs145797303	C	T	C	Sox1.mouse_HMG_2	6	1	-	4.506180199376393	5.946357621245033	TTGACTGCCATTTTT
chr4	23719018	23719019	chr4:23719019:A:G	rs871410	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	23815785	23815786	chr4:23815786:G:A	rs2932968	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	23819700	23819701	chr4:23819701:T:C	rs60276093	T	C	T	Sox1.mouse_HMG_2	4	1	-	9.500802522643562	2.6793897534834903	TTCAATTTCATTCAT
chr4	23855420	23855421	chr4:23855421:G:A	rs10002477	G	A	A	Sox1.mouse_HMG_2	0	1	-	3.50060643589076	3.2346632421213255	CTGAATGCCAATTAT
chr4	23891745	23891746	chr4:23891746:T:C	rs2970869	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	23930008	23930009	chr4:23930009:A:G	rs733109	A	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	23970633	23970634	chr4:23970634:T:C	rs10470808	T	C	T	Sox1.mouse_HMG_2	14	1	+	8.376192298734475	7.501579956011739	GTGGATTCCATTCAT
chr4	24261650	24261651	chr4:24261651:G:A	rs76566700	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.555398994907143	1.8828118912388876	CTCAATTACATTCTC
chr4	24262265	24262266	chr4:24262266:C:G	rs10020364	C	G	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr4	24269810	24269811	chr4:24269811:G:A	rs28665197	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	24524957	24524958	chr4:24524958:T:C	rs10517052	T	C	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	24643553	24643554	chr4:24643554:G:A	rs367578551	G	A	g	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr4	24770267	24770268	chr4:24770268:G:C	rs546212125	G	C	G	Sox1.mouse_HMG_2	4	1	-	13.508938179198575	9.069586477905423	TTGACTAGCATTCAT
chr4	24872455	24872456	chr4:24872456:A:G	rs76399768	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	24887596	24887597	chr4:24887597:C:T	rs148170627	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	24909613	24909614	chr4:24909614:C:T	rs1976942	C	T	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	24937238	24937239	chr4:24937239:A:G	rs11938296	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	25011953	25011954	chr4:25011954:G:A	rs1000946	G	A	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	25029196	25029197	chr4:25029197:A:C	rs60025496	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	25085619	25085620	chr4:25085620:T:C	rs12509581	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	25085656	25085657	chr4:25085657:G:A	rs60230854	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	25085667	25085668	chr4:25085668:G:T	rs74750019	G	T	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	25177555	25177556	chr4:25177556:G:A	rs78886271	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	25505922	25505923	chr4:25505923:C:A	rs6814628	C	A	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	25783203	25783204	chr4:25783204:C:T	rs10019801	C	T	C	Sox1.mouse_HMG_2	4	1	+	6.694610910305268	2.2552592090121175	ATGACTACCATTAAG
chr4	25814289	25814290	chr4:25814290:T:A	rs546632623	T	A	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	26452343	26452344	chr4:26452344:A:C	rs13130981	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	26887431	26887432	chr4:26887432:C:T	rs9998368	C	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	27279145	27279146	chr4:27279146:A:G	rs7689900	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	27410572	27410573	chr4:27410573:C:A	rs17638697	C	A	C	Sox1.mouse_HMG_2	2	1	-	3.0404877017455627	-3.8562066298771502	CTGAAAAACATCCAT
chr4	27595193	27595194	chr4:27595194:T:A	rs139611110	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	28440150	28440151	chr4:28440151:A:G	rs115557380	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	28563163	28563164	chr4:28563164:T:A	rs2458615	T	A	A	Sox1.mouse_HMG_2	7	1	-	3.4035574294266064	2.5459282550514297	CTCTATAACATTCAG
chr4	28879867	28879868	chr4:28879868:T:G	rs151219473	T	G	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	28921671	28921672	chr4:28921672:G:C	rs4692069	G	C	C	Sox1.mouse_HMG_2	8	1	+	6.501752217742548	12.220286880278255	GTGAATACGAGTCAG
chr4	28943018	28943019	chr4:28943019:T:C	rs11731789	T	C	C	Sox1.mouse_HMG_2	13	1	-	4.74583869933228	-0.20027898844036807	TTGACTTCCATACAA
chr4	29081848	29081849	chr4:29081849:T:C	rs4692380	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.300580348063594	0.6565880405703607	ATGAATTTCAGTGAC
chr4	29309428	29309429	chr4:29309429:C:T	rs1836781	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	29394391	29394392	chr4:29394392:C:T	rs75541045	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	30256630	30256631	chr4:30256631:G:A	rs9985956	G	A	A	Sox1.mouse_HMG_2	2	1	+	2.423825625271563	-2.2215769077446548	CTGACTTCCAGACAG
chr4	30273759	30273760	chr4:30273760:A:T	rs28844639	A	T	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	30539581	30539582	chr4:30539582:T:A	rs10032181	T	A	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	30716503	30716504	chr4:30716504:A:G	chr4:30716504:A:G	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	31138446	31138447	chr4:31138447:G:A	rs79898222	G	A	G	Sox1.mouse_HMG_2	2	1	+	7.251808361668118	2.6064058286519014	ATGAGTAGCAGTCAT
chr4	31155704	31155705	chr4:31155705:A:T	rs7692536	A	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	31340265	31340266	chr4:31340266:C:T	rs972558	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	31365389	31365390	chr4:31365390:C:T	rs35845138	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	31365424	31365425	chr4:31365425:G:A	rs34004637	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	32024088	32024089	chr4:32024089:C:G	rs4299633	C	G	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	32180382	32180383	chr4:32180383:T:C	rs6554009	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr4	32180383	32180384	chr4:32180384:G:A	rs76956341	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	32212570	32212571	chr4:32212571:T:G	rs73128224	T	G	T	Sox1.mouse_HMG_2	7	1	-	14.303806963486045	13.907122242817975	ATGACTTACATTCAT
chr4	32486108	32486109	chr4:32486109:G:A	rs4413448	G	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	32498964	32498965	chr4:32498965:G:C	rs1838628	G	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	32565527	32565528	chr4:32565528:T:G	rs9312622	T	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	32572958	32572959	chr4:32572959:C:G	rs11722447	C	G	G	Sox1.mouse_HMG_2	0	1	+	4.059750556832283	3.724390529915439	CTGAATTGCATCCTG
chr4	32572968	32572969	chr4:32572969:T:G	rs11725112	T	G	G	Sox1.mouse_HMG_2	10	1	+	4.059750556832283	1.3071530411071854	CTGAATTGCATCCTG
chr4	34197306	34197307	chr4:34197307:T:G	rs6834907	T	G	g	Sox1.mouse_HMG_2	3	1	-	5.653484309317739	-1.25527046999748	ATAAATTCCATTTAA
chr4	34720834	34720835	chr4:34720835:T:A	rs16990214	T	A	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	34734006	34734007	chr4:34734007:G:A	rs186080835	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr4	34760662	34760663	chr4:34760663:T:A	rs951108	T	A	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	35250619	35250620	chr4:35250620:G:C	rs4241565	G	C	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	35520886	35520887	chr4:35520887:T:A	rs4859308	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	35556624	35556625	chr4:35556625:A:G	rs6856131	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	36242003	36242004	chr4:36242004:A:T	rs143944809	A	T	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	36242031	36242032	chr4:36242032:T:C	rs557148454	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	36351521	36351522	chr4:36351522:G:A	rs1501120	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	36393250	36393251	chr4:36393251:A:G	rs35430316	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr4	36893358	36893359	chr4:36893359:G:C	rs6531489	G	C	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	36978519	36978520	chr4:36978520:G:A	rs13145944	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	37001441	37001442	chr4:37001442:T:C	rs1579805	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.483776517342056	-2.424978261973164	ATAAATACCAATCAG
chr4	37001593	37001594	chr4:37001594:G:A	rs10032425	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.68778443573456	1.0151973320663044	CTGAATAAAATTCCT
chr4	37132374	37132375	chr4:37132375:G:C	rs6531516	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	37511154	37511155	chr4:37511155:G:T	rs2973268	G	T	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	37788364	37788365	chr4:37788365:A:G	rs1364827	A	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	37805906	37805907	chr4:37805907:A:G	rs2911861	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr4	37954517	37954518	chr4:37954518:A:G	rs7675890	A	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	38203625	38203626	chr4:38203626:G:A	rs6811656	G	A	G	Sox1.mouse_HMG_2	8	1	-	9.552557760392714	3.908131070010728	CTGAATACCATGCAT
chr4	38290350	38290351	chr4:38290351:T:C	rs11939640	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	38371551	38371552	chr4:38371552:C:G	rs1872871	C	G	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	38373225	38373226	chr4:38373226:T:G	rs6838149	T	G	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	38410013	38410014	chr4:38410014:C:G	rs6819138	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	38566459	38566460	chr4:38566460:C:G	chr4:38566460:C:G	C	G	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	38574710	38574711	chr4:38574711:G:A	rs566866548	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	38574725	38574726	chr4:38574726:A:G	rs115238566	A	G	A	Sox1.mouse_HMG_2	14	1	-	9.09710382937802	8.222491486655285	CTGAATGACATTCCT
chr4	38681456	38681457	chr4:38681457:T:G	chr4:38681457:T:G	T	G	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	38702112	38702113	chr4:38702113:C:A	rs17582575	C	A	C	Sox1.mouse_HMG_2	8	1	+	6.5204398414480895	1.670943025935991	ATGACTTACTTTCAC
chr4	38753296	38753297	chr4:38753297:A:G	rs781257077	A	G	a	Sox1.mouse_HMG_2	4	1	+	4.297402677649796	-2.5240100915102777	ATGCATAACATTCCT
chr4	38780599	38780600	chr4:38780600:G:C	rs7653908	G	C	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr4	38855581	38855582	chr4:38855582:C:T	rs73811223	C	T	T	Sox1.mouse_HMG_2	14	1	+	7.483565281078773	8.35817762380151	ATAACTGGCATTCAC
chr4	38979821	38979822	chr4:38979822:G:C	rs7692978	G	C	G	Sox1.mouse_HMG_2	14	1	-	3.416908676837279	3.1384529027722765	CTGAATAAGAATCAC
chr4	39062505	39062506	chr4:39062506:G:C	rs2711942	G	C	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	39062541	39062542	chr4:39062542:A:C	rs2711941	A	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	39134857	39134858	chr4:39134858:G:A	rs112345953	G	A	G	Sox1.mouse_HMG_2	2	1	-	3.4062774009600294	1.9022000041837552	CTCATTTCCATTCAT
chr4	39219012	39219013	chr4:39219013:A:T	rs7680520	A	T	A	Sox1.mouse_HMG_2	7	1	+	4.665418967572131	3.807789793196955	GGGAATAACATGCAT
chr4	39304883	39304884	chr4:39304884:C:G	rs2066792	C	G	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	40150286	40150287	chr4:40150287:A:G	rs1714384	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.894591450331779	-2.014163328983441	CTGACTACCATTTTA
chr4	40150291	40150292	chr4:40150292:C:T	rs1714383	C	T	T	Sox1.mouse_HMG_2	8	1	+	4.894591450331779	-0.7498352400502061	CTGACTACCATTTTA
chr4	40207453	40207454	chr4:40207454:C:G	rs78806878	C	G	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	40242213	40242214	chr4:40242214:G:A	rs79539994	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr4	40329755	40329756	chr4:40329756:A:G	rs35836686	A	G	A	Sox1.mouse_HMG_2	11	1	-	4.642576429770291	-2.266178349544929	CTGAATTCCCTTCTC
chr4	40329768	40329769	chr4:40329769:G:A	rs35405091	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	40502353	40502354	chr4:40502354:T:C	rs16852279	T	C	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	40594532	40594533	chr4:40594533:C:T	rs12644343	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	40686718	40686719	chr4:40686719:T:C	rs2035383	T	C	.	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	40710872	40710873	chr4:40710873:G:A	rs10938343	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	40865787	40865788	chr4:40865788:C:T	rs2437320	C	T	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	40865821	40865822	chr4:40865822:C:T	rs12504297	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	40865834	40865835	chr4:40865835:G:C	rs12501245	G	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	41155701	41155702	chr4:41155702:C:T	rs10035059	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	41208804	41208805	chr4:41208805:A:C	rs13127574	A	C	A	Sox1.mouse_HMG_2	13	1	+	3.8939976317768425	-2.4267183773525045	TTCTATACCATTCAT
chr4	41437834	41437835	chr4:41437835:A:G	rs4515195	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	41807029	41807030	chr4:41807030:T:G	rs2043901	T	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	41887219	41887220	chr4:41887220:T:C	rs6821891	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	42428034	42428035	chr4:42428035:T:A	rs13105200	T	A	A	Sox1.mouse_HMG_2	13	1	-	8.530231170503612	5.33586761734532	TTGGATAACATTCAG
chr4	43204944	43204945	chr4:43204945:C:T	rs3922846	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	43316884	43316885	chr4:43316885:A:G	rs17457694	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	43762122	43762123	chr4:43762123:A:G	rs78918623	A	G	A	Sox1.mouse_HMG_2	13	1	+	10.053879927935705	5.107762240163058	CTAAATTACATTCAA
chr4	44433667	44433668	chr4:44433668:T:C	rs13144404	T	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	44552089	44552090	chr4:44552090:C:T	rs12647715	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	44660735	44660736	chr4:44660736:G:A	rs4311345	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	45103192	45103193	chr4:45103193:C:T	rs1512315	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	45220448	45220449	chr4:45220449:A:C	rs348557	A	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	46944939	46944940	chr4:46944940:T:C	rs62303698	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr4	47178459	47178460	chr4:47178460:A:G	rs79921381	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.685411817247691	0.7766570379324697	AGGAATTTCATTCTT
chr4	47334828	47334829	chr4:47334829:A:T	rs9291305	A	T	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr4	47463072	47463073	chr4:47463073:A:C	rs62300077	A	C	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr4	47463101	47463102	chr4:47463102:G:A	rs1309278284	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	47566946	47566947	chr4:47566947:A:G	rs6854584	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	47572719	47572720	chr4:47572720:T:C	rs17462259	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	47855599	47855600	chr4:47855600:T:C	rs10030927	T	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	48042985	48042986	chr4:48042986:A:G	rs5005127	A	G	A	Sox1.mouse_HMG_2	10	1	-	7.097778990944484	0.24983741266420278	CTGAATTGCATTGAA
chr4	48477700	48477701	chr4:48477701:T:C	rs1565217	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.085380971036622	-1.7360317981234512	CTGAATAACAGTTTG
chr4	48481912	48481913	chr4:48481913:T:C	rs7697851	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.8972497535273165	5.02263741080458	CTGAATATCTTTCTT
chr4	48742596	48742597	chr4:48742597:C:G	rs146398299	C	G	C	Sox1.mouse_HMG_2	10	1	-	7.752505121698842	3.6571610591436587	ATGAATAGCAGTCCT
chr4	49107498	49107499	chr4:49107499:T:C	rs371794765	T	C	.	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	49119517	49119518	chr4:49119518:A:T	rs62653333	A	T	.	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	49119537	49119538	chr4:49119538:T:C	rs201474776	T	C	.	Sox1.mouse_HMG_2	10	1	+	3.4994914441092373	-3.3484501341710433	TTGCATTCCATTCGT
chr4	49149964	49149965	chr4:49149965:A:G	rs28971796	A	G	.	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	49156165	49156166	chr4:49156166:T:G	rs150156719	T	G	.	Sox1.mouse_HMG_2	1	1	+	7.514597825022599	2.5661343384507895	TTAAATTCCATTCTT
chr4	49654341	49654342	chr4:49654342:T:C	rs62635639	T	C	.	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	49657841	49657842	chr4:49657842:A:C	rs62636966	A	C	.	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	52096298	52096299	chr4:52096299:T:C	rs61796830	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	52236660	52236661	chr4:52236661:A:T	rs10030352	A	T	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	52367131	52367132	chr4:52367132:C:G	rs6841896	C	G	G	Sox1.mouse_HMG_2	14	1	-	10.39814133097321	10.676597105038214	ATGACTTACAGTCAG
chr4	52550398	52550399	chr4:52550399:G:A	rs138492353	G	A	G	Sox1.mouse_HMG_2	13	1	+	6.015641185345486	10.961758873118134	ATGAATTAAATTCGC
chr4	52839409	52839410	chr4:52839410:G:A	rs76514671	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	52846546	52846547	chr4:52846547:C:G	rs9995861	C	G	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	52982338	52982339	chr4:52982339:T:C	rs11133239	T	C	T	Sox1.mouse_HMG_2	9	1	-	6.83513666560895	-0.07361811370627158	GTGTCTACCATTCAT
chr4	53101365	53101366	chr4:53101366:C:G	rs560997166	C	G	C	Sox1.mouse_HMG_2	2	1	-	6.74300091479213	1.3503839799456923	TAGAATATCATTCTG
chr4	53223409	53223410	chr4:53223410:G:A	rs11929903	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	53223482	53223483	chr4:53223483:A:C	chr4:53223483:A:C	A	C	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	53367892	53367893	chr4:53367893:T:C	rs186155533	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	53578624	53578625	chr4:53578625:G:C	rs10016971	G	C	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	53598693	53598694	chr4:53598694:G:A	rs62325483	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	53705898	53705899	chr4:53705899:G:T	rs17083333	G	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	53777555	53777556	chr4:53777556:A:T	rs73250998	A	T	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	53944150	53944151	chr4:53944151:A:G	rs6855266	A	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	54319379	54319380	chr4:54319380:C:G	rs75632910	C	G	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	54367297	54367298	chr4:54367298:C:T	rs1444043	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	54371468	54371469	chr4:54371469:A:G	rs76274425	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	54543647	54543648	chr4:54543648:C:T	rs218267	C	T	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	54749908	54749909	chr4:54749909:G:A	rs56742409	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	55080503	55080504	chr4:55080504:G:A	rs11936206	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	55346080	55346081	chr4:55346081:T:C	rs114379639	T	C	T	Sox1.mouse_HMG_2	6	1	-	5.637841115971885	4.197663694103247	CAGAATATGATTCAT
chr4	55544620	55544621	chr4:55544621:T:C	rs7667741	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	55571993	55571994	chr4:55571994:T:C	rs11735654	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	56204081	56204082	chr4:56204082:A:G	rs6817929	A	G	G	Sox1.mouse_HMG_2	10	1	-	4.589763734164984	-2.258177844115296	TTGCCTGCCATTCAC
chr4	56229299	56229300	chr4:56229300:G:A	rs35884565	G	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	56301274	56301275	chr4:56301275:A:G	rs149379820	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	56301283	56301284	chr4:56301284:C:T	rs116644572	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	56464720	56464721	chr4:56464721:G:C	rs144706236	G	C	G	Sox1.mouse_HMG_2	2	1	+	7.595118269920179	2.2025013350737397	GTGAATAGCATGCAA
chr4	57045066	57045067	chr4:57045067:G:A	rs1024542647	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	57077215	57077216	chr4:57077216:A:G	rs10009533	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	57154592	57154593	chr4:57154593:C:T	rs11934802	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	57154593	57154594	chr4:57154594:G:A	rs7677987	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	57169185	57169186	chr4:57169186:T:C	rs4865194	T	C	T	Sox1.mouse_HMG_2	10	1	+	7.819860156462893	0.9719185781826113	GTGACTAACATTCCT
chr4	57282349	57282350	chr4:57282350:A:G	rs73819044	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	57358900	57358901	chr4:57358901:G:A	rs4242010	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	57379035	57379036	chr4:57379036:G:A	rs1524682	G	A	G	Sox1.mouse_HMG_2	3	1	-	3.7967059176190694	3.7967059176190694	ATGCTTAACATTCAT
chr4	57445807	57445808	chr4:57445808:T:C	rs34787896	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr4	57445823	57445824	chr4:57445824:A:G	rs114308469	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.752391649446203	-3.1563631298690193	CTGAATTCCATTTCC
chr4	57472617	57472618	chr4:57472618:T:C	rs11133496	T	C	C	Sox1.mouse_HMG_2	5	1	+	4.353248368280233	-2.555506411034987	CTGAATTTCAGTGAG
chr4	57608044	57608045	chr4:57608045:T:G	rs4865247	T	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	57673059	57673060	chr4:57673060:G:A	rs17088508	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	57704994	57704995	chr4:57704995:C:A	rs35659385	C	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	57854971	57854972	chr4:57854972:T:C	rs13149584	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	58103455	58103456	chr4:58103456:A:C	rs2610175	A	C	C	Sox1.mouse_HMG_2	9	1	-	4.384496317191309	4.384496317191309	ATCAATTACTTTCAT
chr4	58510084	58510085	chr4:58510085:A:T	rs6554538	A	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	58515338	58515339	chr4:58515339:C:G	rs7670257	C	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr4	59222551	59222552	chr4:59222552:T:G	rs1021819	T	G	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	59450818	59450819	chr4:59450819:C:T	rs1018264	C	T	C	Sox1.mouse_HMG_2	0	1	+	3.850270206788605	3.5843270130191724	CGGAATTCCAGTCTC
chr4	60041141	60041142	chr4:60041142:T:A	rs12650665	T	A	T	Sox1.mouse_HMG_2	11	1	+	5.79044347589777	-1.118311303417451	AGGAATTACAGTCTT
chr4	60043161	60043162	chr4:60043162:T:C	rs77552522	T	C	T	Sox1.mouse_HMG_2	5	1	+	6.403038790399534	-0.5057159889156874	CTGAATTGGATTCTT
chr4	60043171	60043172	chr4:60043172:G:T	rs141652040	G	T	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	60043175	60043176	chr4:60043176:A:C	rs7674629	A	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	60115736	60115737	chr4:60115737:T:C	rs7677892	T	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	60123200	60123201	chr4:60123201:T:C	rs62305006	T	C	-	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	60241993	60241994	chr4:60241994:C:T	rs4277806	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr4	60588821	60588822	chr4:60588822:G:A	rs72640633	G	A	.	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	60934707	60934708	chr4:60934708:C:G	rs983030064	C	G	c	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	61003562	61003563	chr4:61003563:G:T	rs35942294	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	61171567	61171568	chr4:61171568:T:C	rs1026142	T	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	61427234	61427235	chr4:61427235:G:A	rs75131683	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	61741756	61741757	chr4:61741757:C:A	rs549668358	C	A	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	61741761	61741762	chr4:61741762:T:C	rs184563369	T	C	T	Sox1.mouse_HMG_2	13	1	-	2.895564765776123	-2.050552921996525	ATGAATAACAAACAC
chr4	62128599	62128600	chr4:62128600:T:C	rs12507188	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.18893572129223	-1.7198190580229904	TTGACTTCCATGCAC
chr4	62232326	62232327	chr4:62232327:C:T	rs10026975	C	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	62260373	62260374	chr4:62260374:T:A	rs73823366	T	A	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr4	62462194	62462195	chr4:62462195:C:T	rs13128657	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr4	62475647	62475648	chr4:62475648:C:T	rs13134351	C	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	62475667	62475668	chr4:62475668:G:T	rs115729786	G	T	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	62646124	62646125	chr4:62646125:C:T	rs28893226	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	62706303	62706304	chr4:62706304:T:G	rs72630526	T	G	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	63831877	63831878	chr4:63831878:T:C	rs17637125	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	63832065	63832066	chr4:63832066:G:A	rs7666558	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	64490924	64490925	chr4:64490925:C:T	rs116818725	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	64503862	64503863	chr4:64503863:C:G	rs11732760	C	G	G	Sox1.mouse_HMG_2	8	1	+	7.1291302513523505	1.4105955888166406	TTCAATAACAGTCAA
chr4	64800224	64800225	chr4:64800225:G:C	rs10002046	G	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	64893409	64893410	chr4:64893410:G:A	rs537018557	G	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	65370932	65370933	chr4:65370933:T:C	rs17086131	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	65508592	65508593	chr4:65508593:A:G	rs531006340	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	65508595	65508596	chr4:65508596:A:G	rs73223852	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	65561325	65561326	chr4:65561326:C:T	rs6826193	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	65566190	65566191	chr4:65566191:T:C	rs11931601	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	65623624	65623625	chr4:65623625:G:A	rs150547186	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.082187845333286	0.40960074166503213	ATGACTAGAATTCTA
chr4	65909362	65909363	chr4:65909363:G:A	rs6551975	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	66294788	66294789	chr4:66294789:C:T	rs13151607	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	66767135	66767136	chr4:66767136:G:A	rs1839418	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	66872538	66872539	chr4:66872539:G:A	rs75269928	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	67343598	67343599	chr4:67343599:C:G	rs6830232	C	G	C	Sox1.mouse_HMG_2	12	1	+	6.878906000778309	-0.021542649688055582	ATAAATAAAATTCAG
chr4	67521584	67521585	chr4:67521585:T:A	rs115587029	T	A	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr4	67634722	67634723	chr4:67634723:C:T	rs354861	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr4	67688018	67688019	chr4:67688019:G:C	rs12646549	G	C	G	Sox1.mouse_HMG_2	12	1	-	5.565887984252735	-1.3345606662136285	CGGAATACCAGTCTT
chr4	67713580	67713581	chr4:67713581:G:A	rs764746824	G	A	G	Sox1.mouse_HMG_2	10	1	+	4.572512490231389	0.47716842767620593	CTGATTGCCAGTCAC
chr4	67722712	67722713	chr4:67722713:T:C	rs2012551	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	67918856	67918857	chr4:67918857:C:A	rs353164	C	A	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	67996243	67996244	chr4:67996244:C:T	rs1438407	C	T	c	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	68180992	68180993	chr4:68180993:T:C	rs12507309	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	68268112	68268113	chr4:68268113:T:A	rs532360054	T	A	T	Sox1.mouse_HMG_2	12	1	+	8.833706155991647	6.605844609193539	GTGAATTTCATTTAA
chr4	68411022	68411023	chr4:68411023:A:T	rs138322149	A	T	t	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	68411050	68411051	chr4:68411051:A:G	rs141824722	A	G	a	Sox1.mouse_HMG_2	5	1	-	12.18103041171289	5.272275632397666	ATGAATGACAGTCAG
chr4	68658859	68658860	chr4:68658860:C:T	rs4694738	C	T	c	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	68748163	68748164	chr4:68748164:C:T	rs428529	C	T	T	Sox1.mouse_HMG_2	2	1	-	5.104526148369493	0.45912361535327595	ATGCATTACATTTAT
chr4	69526267	69526268	chr4:69526268:C:T	rs1432323	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	69531689	69531690	chr4:69531690:G:A	rs11723463	G	A	A	Sox1.mouse_HMG_2	8	1	-	8.47045179822119	2.8260251078392	GTGACTCACATTCAA
chr4	69531705	69531706	chr4:69531706:T:C	rs28830586	T	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	69949797	69949798	chr4:69949798:T:C	rs28546495	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	69949848	69949849	chr4:69949849:C:A	rs1220848	C	A	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	70306423	70306424	chr4:70306424:A:G	rs1017833	A	G	A	Sox1.mouse_HMG_2	14	1	+	8.485639724158144	8.65028097205309	CTGACTAACATTTAA
chr4	70719314	70719315	chr4:70719315:T:G	rs1486950288	T	G	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	71151256	71151257	chr4:71151257:A:G	rs7689135	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	71765622	71765623	chr4:71765623:C:T	rs36039552	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	71846664	71846665	chr4:71846665:A:C	rs1607739	A	C	.	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	72110935	72110936	chr4:72110936:T:C	rs115976041	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	72209044	72209045	chr4:72209045:G:T	rs28542548	G	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	72287116	72287117	chr4:72287117:T:C	rs72653979	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	72352564	72352565	chr4:72352565:C:A	rs180703074	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	72448338	72448339	chr4:72448339:C:T	rs13116502	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	72557062	72557063	chr4:72557063:T:G	chr4:72557063:T:G	T	G	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	72955346	72955347	chr4:72955347:C:A	rs12505905	C	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	72992135	72992136	chr4:72992136:A:G	rs13135890	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	73446650	73446651	chr4:73446651:A:C	rs28693791	A	C	-	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	73561236	73561237	chr4:73561237:C:G	rs28696705	C	G	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	73608142	73608143	chr4:73608143:G:A	rs75085493	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	73674664	73674665	chr4:73674665:G:A	rs76119537	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	73687096	73687097	chr4:73687097:G:C	rs1247608	G	C	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	73705450	73705451	chr4:73705451:T:C	chr4:73705451:T:C	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.265507608764225	-2.643247170550995	GGGACTATCATTCTC
chr4	73870995	73870996	chr4:73870996:T:C	rs111913680	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	74156580	74156581	chr4:74156581:G:A	chr4:74156581:G:A	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	74267995	74267996	chr4:74267996:G:A	rs16850813	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	74408538	74408539	chr4:74408539:G:A	rs1389961	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	74456340	74456341	chr4:74456341:T:G	rs56201943	T	G	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	74516572	74516573	chr4:74516573:G:A	rs186404022	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	74534597	74534598	chr4:74534598:T:C	rs1994941	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr4	74608909	74608910	chr4:74608910:T:C	rs6821984	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	74632707	74632708	chr4:74632708:C:T	rs76601166	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr4	74966634	74966635	chr4:74966635:A:G	rs75468816	A	G	g	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	75222002	75222003	chr4:75222003:C:T	rs190084034	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr4	75250077	75250078	chr4:75250078:A:G	rs6535241	A	G	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	75288561	75288562	chr4:75288562:G:T	rs11099494	G	T	G	Sox1.mouse_HMG_2	12	1	-	3.7093639074639215	-3.1910847430024423	ATGGATAACATACAT
chr4	75708225	75708226	chr4:75708226:T:C	rs1512739	T	C	C	Sox1.mouse_HMG_2	14	1	+	6.02283418031758	5.148221837594844	GTGAATACCCTTCTT
chr4	75715379	75715380	chr4:75715380:G:C	rs115857742	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	76054893	76054894	chr4:76054894:T:C	rs78895754	T	C	T	Sox1.mouse_HMG_2	6	1	-	5.379119456620896	3.938942034752257	GAAAATAGCATTCAG
chr4	76054902	76054903	chr4:76054903:T:C	rs4593163	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	76120303	76120304	chr4:76120304:T:G	rs62299350	T	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	76488641	76488642	chr4:76488642:G:A	rs7654754	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	76607392	76607393	chr4:76607393:T:C	rs76941969	T	C	t	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	76679720	76679721	chr4:76679721:T:C	rs3943037	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.9593122217363375	2.3153199142431027	CTGAATGCCATCCAG
chr4	76765541	76765542	chr4:76765542:A:G	rs6826310	A	G	G	Sox1.mouse_HMG_2	9	1	+	4.260292608845281	-2.6484621704699403	CTGAATTCCACTCTA
chr4	76782710	76782711	chr4:76782711:A:C	rs878956648	A	C	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	76886472	76886473	chr4:76886473:A:G	rs78111759	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	76932601	76932602	chr4:76932602:C:T	rs74319333	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	77012588	77012589	chr4:77012589:G:A	rs35013553	G	A	g	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	77269622	77269623	chr4:77269623:G:A	rs12643786	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	77269664	77269665	chr4:77269665:C:T	rs556131598	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	77311151	77311152	chr4:77311152:C:G	rs12651380	C	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	77320523	77320524	chr4:77320524:T:C	rs2866050	T	C	T	Sox1.mouse_HMG_2	0	1	-	5.020104895189311	4.0158686625541105	AAGAATTGCATTCCT
chr4	77349452	77349453	chr4:77349453:G:T	rs17002573	G	T	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	77349945	77349946	chr4:77349946:G:A	rs115087740	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.044734840152467	1.40030814977048	CAGAATTGCAGTCAC
chr4	77349961	77349962	chr4:77349962:C:G	rs17002574	C	G	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	77413727	77413728	chr4:77413728:C:T	rs6841674	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	77444181	77444182	chr4:77444182:T:A	rs4859848	T	A	T	Sox1.mouse_HMG_2	9	1	-	5.913873493161096	-0.9948812861541246	CTGAACTACATTCTT
chr4	78005246	78005247	chr4:78005247:G:A	rs143341496	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	78030573	78030574	chr4:78030574:G:A	rs11936798	G	A	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	78125904	78125905	chr4:78125905:G:A	rs7676083	G	A	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	78197378	78197379	chr4:78197379:A:G	rs1996389	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.093839629029545	4.2192272863068085	TTGTATGCCAGTCAT
chr4	78208464	78208465	chr4:78208465:G:T	rs7438530	G	T	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr4	78230559	78230560	chr4:78230560:C:T	rs1470989	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	78319318	78319319	chr4:78319319:C:T	rs345511	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	78414190	78414191	chr4:78414191:G:T	rs1484333	G	T	G	Sox1.mouse_HMG_2	12	1	-	3.830152183154358	-3.0702964673120063	ATGAATTACAGACTT
chr4	78447519	78447520	chr4:78447520:G:T	rs2867070	G	T	T	Sox1.mouse_HMG_2	2	1	+	5.454878915061661	-1.4418154165610526	CTGGCTTCCATTCAC
chr4	78543612	78543613	chr4:78543613:T:C	rs11098227	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.290682352444913	-2.618072426870308	TTCAATAACATACAT
chr4	78786192	78786193	chr4:78786193:G:A	rs6838118	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	79031325	79031326	chr4:79031326:C:G	rs17003589	C	G	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	79211805	79211806	chr4:79211806:T:C	rs76689659	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	79552321	79552322	chr4:79552322:T:C	rs2165388	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	79588875	79588876	chr4:79588876:T:C	rs2903639	T	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	79883081	79883082	chr4:79883082:A:C	rs77432521	A	C	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	80077814	80077815	chr4:80077815:A:T	rs56339730	A	T	A	Sox1.mouse_HMG_2	11	1	-	4.102768050903196	-2.8059867284120252	ATGAATATGAATCAT
chr4	80140370	80140371	chr4:80140371:G:A	rs72868359	G	A	G	Sox1.mouse_HMG_2	6	1	+	3.808239172694349	5.248416594562987	ATGAATGTCATACTA
chr4	80172607	80172608	chr4:80172608:A:G	rs73831041	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.690182631996182	1.0461903245029487	ATGAATATCTGTCAA
chr4	80264878	80264879	chr4:80264879:A:G	rs17466289	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.402430326398393	0.7584380189051584	CTGAATGCCATTTGT
chr4	80265557	80265558	chr4:80265558:C:T	rs35830840	C	T	C	Sox1.mouse_HMG_2	12	1	+	5.781441747407017	1.108854643738763	ATAAATAACAGTCTG
chr4	80926675	80926676	chr4:80926676:A:G	rs115922515	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	81013210	81013211	chr4:81013211:C:T	rs4693783	C	T	T	Sox1.mouse_HMG_2	8	1	+	4.834131157703868	-0.8102955326781188	TTGAATTACACTCTC
chr4	81084781	81084782	chr4:81084782:T:G	rs148165671	T	G	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	81349923	81349924	chr4:81349924:C:T	rs78328818	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	81467490	81467491	chr4:81467491:T:C	rs77853436	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr4	81492523	81492524	chr4:81492524:T:G	rs7691170	T	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	81631683	81631684	chr4:81631684:T:G	rs10008592	T	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	81684795	81684796	chr4:81684796:C:T	rs11099495	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	82108521	82108522	chr4:82108522:G:T	rs4693018	G	T	g	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	82247434	82247435	chr4:82247435:C:T	rs189730572	C	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	82267750	82267751	chr4:82267751:T:C	rs17005557	T	C	t	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	82370486	82370487	chr4:82370487:A:C	rs3828538	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	82433867	82433868	chr4:82433868:T:C	rs58747459	T	C	T	Sox1.mouse_HMG_2	13	1	+	6.001215503316245	2.87486304734519	CTGAGTTACATTCTT
chr4	82509136	82509137	chr4:82509137:T:A	rs10005401	T	A	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	82564216	82564217	chr4:82564217:C:T	rs7694399	C	T	C	Sox1.mouse_HMG_2	12	1	+	10.36515202222362	5.692564918555368	ATGAATTACATTCCT
chr4	82704772	82704773	chr4:82704773:G:C	rs72661289	G	C	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	82726643	82726644	chr4:82726644:A:G	rs9684074	A	G	A	Sox1.mouse_HMG_2	0	1	-	6.073072597191078	6.33901579096051	TTGTATATCAGTCAT
chr4	82747284	82747285	chr4:82747285:T:C	rs72906481	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.087902408735711	-1.82085237057951	ATGAATATCATCTAT
chr4	82812596	82812597	chr4:82812597:G:A	rs752933501	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	82901673	82901674	chr4:82901674:A:C	rs1379618	A	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	83106303	83106304	chr4:83106304:G:A	rs9685274	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.040866028791713	-1.6035606615902727	AAGAATTACAATCAG
chr4	83204968	83204969	chr4:83204969:G:A	rs11730345	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	83204975	83204976	chr4:83204976:A:C	rs11726618	A	C	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	83204999	83205000	chr4:83205000:C:T	rs7680103	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	83219687	83219688	chr4:83219688:C:T	rs149589192	C	T	C	Sox1.mouse_HMG_2	8	1	-	3.3096756431780685	4.1787134902016785	CTGACTTGGAGTCAG
chr4	83679582	83679583	chr4:83679583:T:G	rs57980547	T	G	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	84108740	84108741	chr4:84108741:C:T	rs1950128	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	84108760	84108761	chr4:84108761:G:A	rs1950127	G	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	84686611	84686612	chr4:84686612:T:C	rs62303075	T	C	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	84728403	84728404	chr4:84728404:A:C	rs11097024	A	C	C	Sox1.mouse_HMG_2	11	1	-	8.049987629568271	1.1412328502530507	TGGAATTACAGTCAT
chr4	84814575	84814576	chr4:84814576:A:G	chr4:84814576:A:G	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	84814611	84814612	chr4:84814612:G:T	rs1601286	G	T	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	84937175	84937176	chr4:84937176:T:C	rs6848127	T	C	C	Sox1.mouse_HMG_2	4	1	-	5.240373291298539	-1.5810394778615335	TTGAATTTCAGTGAT
chr4	85210133	85210134	chr4:85210134:C:T	rs11728362	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	85451367	85451368	chr4:85451368:A:C	rs78366521	A	C	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	85499644	85499645	chr4:85499645:C:T	rs13434422	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	85600402	85600403	chr4:85600403:G:T	rs7685465	G	T	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	85608187	85608188	chr4:85608188:A:G	rs4453927	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	85762223	85762224	chr4:85762224:C:G	rs17010795	C	G	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	85772599	85772600	chr4:85772600:C:T	rs7680588	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	85794250	85794251	chr4:85794251:T:A	rs12503243	T	A	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	85833213	85833214	chr4:85833214:C:T	rs74363751	C	T	C	Sox1.mouse_HMG_2	7	1	+	6.337797386633255	5.876852932926148	CTGACTTCCATTGAT
chr4	85898299	85898300	chr4:85898300:C:T	rs17410566	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	85938263	85938264	chr4:85938264:T:C	rs550805904	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	85994694	85994695	chr4:85994695:T:C	rs10003909	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.064550447634777	-1.844204331680444	CTGAATTTCATTGTT
chr4	86130900	86130901	chr4:86130901:T:C	rs28552906	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr4	86182447	86182448	chr4:86182448:C:T	rs17011428	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	86536482	86536483	chr4:86536483:A:G	rs4607180	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	87038232	87038233	chr4:87038233:G:A	rs17012279	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	87038986	87038987	chr4:87038987:C:T	rs767314	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	87079055	87079056	chr4:87079056:A:C	rs144464693	A	C	A	Sox1.mouse_HMG_2	1	1	-	3.964764624755642	-0.9836988618161681	TTGGATAAGATTCAT
chr4	87093817	87093818	chr4:87093818:C:G	rs62306532	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	87357230	87357231	chr4:87357231:G:T	rs115741611	G	T	G	Sox1.mouse_HMG_2	8	1	-	7.468836450385973	2.6193396348738744	ATGAATACCAGCCAT
chr4	87525975	87525976	chr4:87525976:A:G	rs6814797	A	G	A	Sox1.mouse_HMG_2	4	1	+	6.315166721308909	-0.5062460478511628	TTGAATTTCAGTTAG
chr4	87527327	87527328	chr4:87527328:T:G	rs10516793	T	G	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	87527365	87527366	chr4:87527366:T:C	rs17012816	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	87544006	87544007	chr4:87544007:G:A	chr4:87544007:G:A	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	87696330	87696331	chr4:87696331:A:G	rs56235599	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr4	87935189	87935190	chr4:87935190:A:G	rs1463116	A	G	-	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	87969591	87969592	chr4:87969592:G:A	rs12502049	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr4	88002009	88002010	chr4:88002010:A:G	rs6843443	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	88002016	88002017	chr4:88002017:G:T	rs4640632	G	T	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr4	88148374	88148375	chr4:88148375:T:A	rs2725242	T	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	88159342	88159343	chr4:88159343:A:T	rs59172759	A	T	A	Sox1.mouse_HMG_2	5	1	-	6.5902928868035975	-0.31846189251162327	CAGAATCCCATTCAC
chr4	88336265	88336266	chr4:88336266:A:G	rs34947320	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	88609658	88609659	chr4:88609659:A:G	rs1156663364	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr4	88609673	88609674	chr4:88609674:C:G	rs17799176	C	G	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr4	88706391	88706392	chr4:88706392:C:T	rs79066056	C	T	C	Sox1.mouse_HMG_2	1	1	-	4.846188397938738	5.150659577017312	CGGAATTCCATTTAG
chr4	88808922	88808923	chr4:88808923:C:T	rs2167750	C	T	T	Sox1.mouse_HMG_2	8	1	+	4.947924293793711	-0.6965023965882754	CTAAATAACAGTCTA
chr4	88894252	88894253	chr4:88894253:A:G	rs2704581	A	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	89055582	89055583	chr4:89055583:T:C	rs9996559	T	C	T	Sox1.mouse_HMG_2	11	1	+	4.705822546120797	-2.202932233194424	ATGACTACCAATCTT
chr4	89213691	89213692	chr4:89213692:C:T	rs530321	C	T	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr4	89282836	89282837	chr4:89282837:C:T	rs10034673	C	T	T	Sox1.mouse_HMG_2	8	1	+	6.352885051799871	0.7084583614178838	ATGAATCACAGTCTC
chr4	89715651	89715652	chr4:89715652:G:T	rs356217	G	T	T	Sox1.mouse_HMG_2	8	1	-	2.705127674828719	-2.1443691406833794	GTGTATAACATGCAT
chr4	89826731	89826732	chr4:89826732:G:C	rs1811443	G	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	89869085	89869086	chr4:89869086:G:A	rs1372513	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr4	90447382	90447383	chr4:90447383:C:G	rs17827539	C	G	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	90544321	90544322	chr4:90544322:A:G	rs116046009	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.25376791003817	-2.5676448591219017	ATGAATAGAACTCAC
chr4	90841832	90841833	chr4:90841833:A:G	rs10021524	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	90996264	90996265	chr4:90996265:A:G	rs2035116	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	91068412	91068413	chr4:91068413:A:G	rs1461594	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	92385573	92385574	chr4:92385574:T:C	rs10012465	T	C	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	93292615	93292616	chr4:93292616:A:G	chr4:93292616:A:G	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.132393267355978	-0.5115990401372567	GTGACTGGCATTTTT
chr4	93292620	93292621	chr4:93292621:A:G	chr4:93292621:A:G	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	93299369	93299370	chr4:93299370:G:A	rs1207180921	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	93317715	93317716	chr4:93317716:G:A	rs1368728	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	93352679	93352680	chr4:93352680:T:A	rs1433659	T	A	T	Sox1.mouse_HMG_2	5	1	+	4.988729604802583	-1.9200251745126367	TTCAATTTCATTCTA
chr4	93776828	93776829	chr4:93776829:T:C	rs893707	T	C	C	Sox1.mouse_HMG_2	0	1	+	8.133546449835542	8.399489643604976	TTGCATACCATTCAG
chr4	93897490	93897491	chr4:93897491:C:T	rs55911904	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	94520413	94520414	chr4:94520414:C:T	rs28491414	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	94520440	94520441	chr4:94520441:C:T	rs2433325	C	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	94714808	94714809	chr4:94714809:T:C	rs11934616	T	C	T	Sox1.mouse_HMG_2	1	1	+	10.19408326213876	5.550090954645526	CTCAATACCATTCAC
chr4	95394770	95394771	chr4:95394771:A:T	rs10020711	A	T	T	Sox1.mouse_HMG_2	13	1	-	6.131276984584299	9.325640537742592	CTGAATTGCATTTTA
chr4	95638984	95638985	chr4:95638985:A:G	rs992852	A	G	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	95642577	95642578	chr4:95642578:C:G	rs7681580	C	G	G	Sox1.mouse_HMG_2	8	1	-	4.198529204702357	9.917063867238065	ATGAATAGGCTTCAT
chr4	95836160	95836161	chr4:95836161:A:G	rs1369982	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.27166133422185	-1.5497514349382202	ATATATAGCATTCAT
chr4	96352505	96352506	chr4:96352506:A:G	rs9998383	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	98047483	98047484	chr4:98047484:G:T	rs36028444	G	T	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	98128222	98128223	chr4:98128223:G:A	rs6818045	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	98491812	98491813	chr4:98491813:A:G	rs149719458	A	G	A	Sox1.mouse_HMG_2	4	1	+	6.843657009079549	0.02224423991947727	TTTAATTTCATTCAG
chr4	98521916	98521917	chr4:98521917:A:G	rs7689116	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr4	98534421	98534422	chr4:98534422:T:G	rs11097620	T	G	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	98556316	98556317	chr4:98556317:C:A	rs79917530	C	A	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	98656693	98656694	chr4:98656694:A:T	rs4699664	A	T	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	98759583	98759584	chr4:98759584:A:G	rs11933538	A	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	99353295	99353296	chr4:99353296:A:T	rs1334079668	A	T	A	Sox1.mouse_HMG_2	9	1	+	3.464370630461546	-3.4443841488536746	CTCAATAACAATCAG
chr4	99353306	99353307	chr4:99353307:A:T	rs34774688	A	T	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr4	99414428	99414429	chr4:99414429:T:C	rs284785	T	C	T	Sox1.mouse_HMG_2	13	1	-	6.5982362108305885	1.6521185230579398	ATGACTTTCACTCAT
chr4	99430327	99430328	chr4:99430328:C:G	rs74491575	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr4	99710376	99710377	chr4:99710377:G:A	rs17029357	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	99724665	99724666	chr4:99724666:C:T	rs72917476	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	99791186	99791187	chr4:99791187:A:C	rs12152585	A	C	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	99791217	99791218	chr4:99791218:T:C	rs12152555	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	99871794	99871795	chr4:99871795:G:A	rs1365492	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr4	100014874	100014875	chr4:100014875:C:T	rs6811559	C	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	100061697	100061698	chr4:100061698:C:T	rs149527147	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.6698019990910877	4.544414341813824	CTGATTGTCATTCTC
chr4	100086031	100086032	chr4:100086032:C:T	rs12502279	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr4	100125035	100125036	chr4:100125036:A:C	rs4602501	A	C	A	Sox1.mouse_HMG_2	5	1	-	5.945531583110886	-0.9632231962043342	ATGAATAACATATAT
chr4	100348712	100348713	chr4:100348713:C:T	rs71614647	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	100417976	100417977	chr4:100417977:T:C	rs75944035	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	100419951	100419952	chr4:100419952:G:A	rs4323110	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	100421094	100421095	chr4:100421095:G:A	rs34038967	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	100421481	100421482	chr4:100421482:T:C	rs28446061	T	C	T	Sox1.mouse_HMG_2	7	1	+	6.576949441374199	7.037893895081306	TTAAATATCATTCTA
chr4	100421506	100421507	chr4:100421507:G:A	rs59679939	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	100462474	100462475	chr4:100462475:T:C	rs357654	T	C	T	Sox1.mouse_HMG_2	11	1	+	6.340896812041236	-0.5678579672739833	GTGAATGACATTTTC
chr4	100510927	100510928	chr4:100510928:G:A	rs3775367	G	A	G	Sox1.mouse_HMG_2	7	1	-	4.151955983031263	3.691011529324156	TTGCCTACCAGTCAT
chr4	100632594	100632595	chr4:100632595:G:T	rs6834962	G	T	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr4	100962882	100962883	chr4:100962883:G:A	rs977603	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	101229392	101229393	chr4:101229393:C:T	rs73833274	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	101229394	101229395	chr4:101229395:C:T	rs4699139	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	101230960	101230961	chr4:101230961:T:C	rs78180740	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	101419151	101419152	chr4:101419152:A:T	rs10433984	A	T	T	Sox1.mouse_HMG_2	11	1	-	8.292257104490485	1.3835023251752638	TTGAATAACAGTTAC
chr4	101870747	101870748	chr4:101870748:C:G	rs10516483	C	G	G	Sox1.mouse_HMG_2	8	1	+	5.621298535732425	-0.09723612680328297	TTGAATAACAGTGAA
chr4	102220283	102220284	chr4:102220284:T:G	rs6825428	T	G	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	102390515	102390516	chr4:102390516:A:C	rs1117522	A	C	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	102401146	102401147	chr4:102401147:T:C	rs61325025	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	102466398	102466399	chr4:102466399:A:G	rs1585216	A	G	A	Sox1.mouse_HMG_2	6	1	+	7.015717713647888	5.57554029177925	GTCACTATCATTCAC
chr4	102466415	102466416	chr4:102466416:C:G	rs77559485	C	G	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	102598207	102598208	chr4:102598208:G:C	rs3774963	G	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	102598239	102598240	chr4:102598240:G:A	rs4648075	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	102624639	102624640	chr4:102624640:A:G	rs4698862	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	102638718	102638719	chr4:102638719:A:G	rs2125211	A	G	A	Sox1.mouse_HMG_2	14	1	+	3.5088309494697025	3.6734721973646502	CTGATTCTCATTCAA
chr4	102723419	102723420	chr4:102723420:C:T	rs75796437	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	102825964	102825965	chr4:102825965:T:G	rs17196685	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.8092946266425365	-0.13916885992927186	CTGACTGACCTTCAA
chr4	102825988	102825989	chr4:102825989:T:G	rs189301948	T	G	-	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	102825989	102825990	chr4:102825990:T:A	rs140906364	T	A	-	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	103095042	103095043	chr4:103095043:C:G	rs7668568	C	G	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	103099430	103099431	chr4:103099431:A:G	rs1054660749	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	103294603	103294604	chr4:103294604:C:A	rs67356037	C	A	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	103441444	103441445	chr4:103441445:G:T	rs73835329	G	T	G	Sox1.mouse_HMG_2	12	1	-	3.801616824388653	-3.0988318260777103	TAGCATTCCATTCAT
chr4	103567006	103567007	chr4:103567007:T:A	rs418405	T	A	T	Sox1.mouse_HMG_2	13	1	-	6.237420775441813	3.0430572222835206	ATTACTATCATTCAG
chr4	103567009	103567010	chr4:103567010:A:G	rs139571249	A	G	A	Sox1.mouse_HMG_2	10	1	-	6.237420775441813	-0.6105208028384665	ATTACTATCATTCAG
chr4	103567030	103567031	chr4:103567031:T:C	rs447619	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	104895251	104895252	chr4:104895252:G:A	rs148944051	G	A	G	Sox1.mouse_HMG_2	8	1	-	8.805811825138031	3.1613851347560433	CTGACTCACATTCAA
chr4	105068615	105068616	chr4:105068616:C:T	rs17501461	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	105109385	105109386	chr4:105109386:C:T	rs72665906	C	T	C	Sox1.mouse_HMG_2	13	1	+	6.161146631850603	9.287499087821658	CTGACTTACATTCCG
chr4	105141283	105141284	chr4:105141284:C:T	rs114613199	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr4	105280625	105280626	chr4:105280626:G:A	rs73838073	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	105401138	105401139	chr4:105401139:A:G	rs17035557	A	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	105917860	105917861	chr4:105917861:T:C	rs10000995	T	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	107213356	107213357	chr4:107213357:C:G	rs28549261	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	107276085	107276086	chr4:107276086:A:G	rs1393587	A	G	A	Sox1.mouse_HMG_2	0	1	-	4.800982087630633	5.066925281400065	TTGACTTGCATTTTT
chr4	107692527	107692528	chr4:107692528:T:C	rs4956128	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr4	107693200	107693201	chr4:107693201:G:A	rs10030486	G	A	A	Sox1.mouse_HMG_2	8	1	-	5.813061417706267	0.16863472732427998	CTGACTTCCAGTTAT
chr4	108043538	108043539	chr4:108043539:C:T	rs143052526	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	108184130	108184131	chr4:108184131:G:A	rs4956164	G	A	A	Sox1.mouse_HMG_2	2	1	+	6.940068799168482	2.294666266152266	GTGAATTACATTTTC
chr4	108270998	108270999	chr4:108270999:G:A	rs72662212	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	108304129	108304130	chr4:108304130:A:G	rs13353615	A	G	a	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	108370954	108370955	chr4:108370955:T:C	rs6842122	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	108385241	108385242	chr4:108385242:C:T	rs114176278	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	108547754	108547755	chr4:108547755:C:T	rs11097994	C	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	108556951	108556952	chr4:108556952:C:G	rs11731416	C	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	108821388	108821389	chr4:108821389:G:A	rs1823763	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	108926272	108926273	chr4:108926273:G:A	rs79716135	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	109589552	109589553	chr4:109589553:C:G	rs9997315	C	G	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr4	109669664	109669665	chr4:109669665:G:A	rs4698776	G	A	a	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	109839784	109839785	chr4:109839785:A:G	rs7664699	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	110248918	110248919	chr4:110248919:C:T	rs72664633	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	110669087	110669088	chr4:110669088:C:T	rs2122076	C	T	C	Sox1.mouse_HMG_2	7	1	-	5.8638413371921265	6.5648961567332025	TTCAATGGCATTCTT
chr4	110923292	110923293	chr4:110923293:T:C	rs441624	T	C	C	Sox1.mouse_HMG_2	1	1	+	7.199661823358316	2.5556695158650813	CTGAATGACATTAAA
chr4	111283331	111283332	chr4:111283332:A:G	rs558313363	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	111540766	111540767	chr4:111540767:T:C	rs76733346	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	112214840	112214841	chr4:112214841:G:A	rs77798961	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	112285328	112285329	chr4:112285329:C:G	rs537667151	C	G	C	Sox1.mouse_HMG_2	6	1	-	6.373431912396165	3.4611943315764377	ACGAATGCCATTTAT
chr4	112302890	112302891	chr4:112302891:G:A	rs9995585	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	112356256	112356257	chr4:112356257:C:T	rs79814021	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	112516089	112516090	chr4:112516090:T:C	rs1005210649	T	C	T	Sox1.mouse_HMG_2	3	1	-	2.2213383588123876	-4.687416420502832	CTGACTGACAGACAG
chr4	112546676	112546677	chr4:112546677:A:T	rs79954018	A	T	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	112853890	112853891	chr4:112853891:A:G	rs17045059	A	G	A	Sox1.mouse_HMG_2	14	1	-	4.566167362277189	3.6915550195544524	ATGAATGACACTTAT
chr4	112853908	112853909	chr4:112853909:A:C	rs11098179	A	C	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	112990570	112990571	chr4:112990571:C:T	rs72671511	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr4	113183527	113183528	chr4:113183528:A:G	rs6847102	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	113349349	113349350	chr4:113349350:A:G	rs60602406	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	113503782	113503783	chr4:113503783:C:T	rs78455205	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	113619460	113619461	chr4:113619461:A:C	rs72617771	A	C	A	Sox1.mouse_HMG_2	13	1	+	6.330912264457089	0.010196255327741377	CCAAATTCCATTCAT
chr4	113635982	113635983	chr4:113635983:C:T	rs138056417	C	T	C	Sox1.mouse_HMG_2	12	1	+	5.625935524461008	0.9533484207927524	TTAAATAACATTCCT
chr4	113702884	113702885	chr4:113702885:C:T	rs142608674	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	113850148	113850149	chr4:113850149:T:C	rs6533720	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	113850152	113850153	chr4:113850153:G:A	rs77285318	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	113886654	113886655	chr4:113886655:G:A	rs6533724	G	A	G	Sox1.mouse_HMG_2	6	1	-	5.7952559581585135	9.306665526105485	CTCAATCACATTCAA
chr4	114019903	114019904	chr4:114019904:G:T	rs35042710	G	T	G	Sox1.mouse_HMG_2	2	1	-	3.403557429426607	4.150771831256828	CTCAATAACATGCAG
chr4	114117236	114117237	chr4:114117237:C:T	rs7673694	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	114117257	114117258	chr4:114117258:C:G	rs17581982	C	G	C	Sox1.mouse_HMG_2	12	1	+	5.942165890046279	-0.9582827604200856	ATGAGTATCAGTCAG
chr4	114121279	114121280	chr4:114121280:A:G	rs10021913	A	G	G	Sox1.mouse_HMG_2	10	1	-	8.59935450255538	1.7514129242750984	ATGAAAAGCATTCAA
chr4	114534995	114534996	chr4:114534996:G:A	rs12503513	G	A	G	Sox1.mouse_HMG_2	6	1	+	6.915425837895353	8.355603259763992	TTAAATGCCATTCTT
chr4	114563872	114563873	chr4:114563873:T:A	rs13105144	T	A	A	Sox1.mouse_HMG_2	1	1	+	2.3979113004635586	-2.2460810070296744	CTGCCTTGCAGTCAC
chr4	114598006	114598007	chr4:114598007:C:G	rs62308123	C	G	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	114729764	114729765	chr4:114729765:C:T	rs111247876	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr4	115332338	115332339	chr4:115332339:T:G	rs6533853	T	G	T	Sox1.mouse_HMG_2	1	1	+	7.107978925642711	2.159515439070902	GTGAGTGACATTCAG
chr4	116564316	116564317	chr4:116564317:C:T	rs4834564	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.987540808884863	-1.6568858814971228	CAGAACAACATTCAA
chr4	116619988	116619989	chr4:116619989:C:T	rs7674092	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	116874786	116874787	chr4:116874787:G:A	rs72675454	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	116942670	116942671	chr4:116942671:C:G	rs4834600	C	G	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	117783504	117783505	chr4:117783505:T:C	rs10019304	T	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr4	117814778	117814779	chr4:117814779:A:G	rs11562851	A	G	A	Sox1.mouse_HMG_2	6	1	+	4.279682234846172	2.8395048129775358	ATGAATACAAATCAG
chr4	117850730	117850731	chr4:117850731:G:A	rs28791500	G	A	A	Sox1.mouse_HMG_2	2	1	+	6.754112835178784	2.1087103021625664	GTGAAATGCATTCAA
chr4	118224448	118224449	chr4:118224449:A:G	rs79233754	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	118839466	118839467	chr4:118839467:T:A	rs114820866	T	A	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	118850114	118850115	chr4:118850115:G:C	rs17050348	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	118894946	118894947	chr4:118894947:A:G	rs62326783	A	G	A	Sox1.mouse_HMG_2	10	1	-	6.00243735971641	-0.8455042185638705	GTGACTTCCATTGAT
chr4	119203149	119203150	chr4:119203150:A:G	rs10006304	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	119315089	119315090	chr4:119315090:A:G	rs17595468	A	G	A	Sox1.mouse_HMG_2	10	1	-	9.59216461805137	2.744223039771091	CTGAATGACATTTAG
chr4	119623062	119623063	chr4:119623063:T:C	rs6534148	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	119623092	119623093	chr4:119623093:G:C	rs183932320	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	120156009	120156010	chr4:120156010:G:A	rs115179889	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	120549064	120549065	chr4:120549065:A:G	rs4833650	A	G	A	Sox1.mouse_HMG_2	5	1	-	8.33794988209936	1.4291951027841403	CTGAGTTTCATTCAT
chr4	120549072	120549073	chr4:120549073:G:C	rs4833168	G	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	120669250	120669251	chr4:120669251:C:G	rs34776884	C	G	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	120671619	120671620	chr4:120671620:A:G	rs766624	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr4	120693637	120693638	chr4:120693638:T:G	rs115706117	T	G	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	120693657	120693658	chr4:120693658:A:C	rs13117731	A	C	A	Sox1.mouse_HMG_2	9	1	+	7.3076745583661085	0.3989197790508875	ATGAATATAATTCTA
chr4	120696129	120696130	chr4:120696130:A:C	rs11729301	A	C	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr4	120769739	120769740	chr4:120769740:T:C	rs6824362	T	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	120778098	120778099	chr4:120778099:T:C	rs3827583	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	121198293	121198294	chr4:121198294:C:T	rs17051321	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	121334035	121334036	chr4:121334036:A:G	rs6842132	A	G	A	Sox1.mouse_HMG_2	7	1	+	4.855856058519536	4.154801238978461	AGGAATAACACTCAC
chr4	121340440	121340441	chr4:121340441:A:T	rs12651331	A	T	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	121595318	121595319	chr4:121595319:G:A	rs74938519	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	121710247	121710248	chr4:121710248:A:T	rs908473212	A	T	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	121827840	121827841	chr4:121827841:A:C	rs1048433	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	122003183	122003184	chr4:122003184:G:A	rs6534331	G	A	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	122456326	122456327	chr4:122456327:C:A	rs2069763	C	A	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr4	122530873	122530874	chr4:122530874:C:A	rs75445223	C	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	122637067	122637068	chr4:122637068:A:G	rs1533237	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	122666674	122666675	chr4:122666675:A:T	rs72671045	A	T	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	122688005	122688006	chr4:122688006:T:G	rs443176	T	G	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	122898906	122898907	chr4:122898907:G:T	rs45447492	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	122898911	122898912	chr4:122898912:A:T	rs45477502	A	T	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr4	122908532	122908533	chr4:122908533:C:T	rs4833846	C	T	C	Sox1.mouse_HMG_2	7	1	+	2.438066844073116	1.9771223903660091	ATGTATACCATCCAC
chr4	123102917	123102918	chr4:123102918:A:G	rs11098692	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	123594356	123594357	chr4:123594357:G:C	rs2589836	G	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	123682957	123682958	chr4:123682958:A:C	rs112339757	A	C	A	Sox1.mouse_HMG_2	1	1	-	4.450912506584356	-0.4975509799874519	ATGAAAAAAATTCAA
chr4	123700599	123700600	chr4:123700600:C:T	rs76275220	C	T	C	Sox1.mouse_HMG_2	4	1	+	6.46545110283452	2.0260994015413694	AAGACTTACATTCTT
chr4	123706174	123706175	chr4:123706175:G:T	rs59869804	G	T	G	Sox1.mouse_HMG_2	12	1	-	6.306022154687162	-0.5944264957792021	ATGACTAATATTCTT
chr4	123716913	123716914	chr4:123716914:C:T	rs9654204	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	123870313	123870314	chr4:123870314:G:A	rs116739414	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr4	124017444	124017445	chr4:124017445:A:G	rs13145647	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.110850746752547	-2.797904032562674	GTAAATATCCTTCAT
chr4	124017452	124017453	chr4:124017453:C:T	rs13145840	C	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	124054076	124054077	chr4:124054077:C:A	rs6842789	C	A	C	Sox1.mouse_HMG_2	12	1	+	4.772865824065866	-2.1275828264004986	CTTAATTACATTCTG
chr4	124506505	124506506	chr4:124506506:T:C	rs12641839	T	C	T	Sox1.mouse_HMG_2	6	1	+	3.4008794274466014	-0.11053014050036966	ACGAAGTTCATTCAC
chr4	124549721	124549722	chr4:124549722:G:C	rs17008358	G	C	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	124637407	124637408	chr4:124637408:A:G	rs9307543	A	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr4	124686359	124686360	chr4:124686360:G:C	rs34944124	G	C	G	Sox1.mouse_HMG_2	10	1	+	4.867211386889709	0.7718673243345262	GTGAATTACAGACAG
chr4	124747557	124747558	chr4:124747558:G:A	rs17008561	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	124945705	124945706	chr4:124945706:A:G	rs114714613	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr4	124959084	124959085	chr4:124959085:G:C	rs12499593	G	C	G	Sox1.mouse_HMG_2	6	1	+	5.490524349697615	2.578286768877888	TTGTATGACAGTCAT
chr4	125619556	125619557	chr4:125619557:A:G	rs72677781	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	125732862	125732863	chr4:125732863:C:T	rs4407521	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr4	126038925	126038926	chr4:126038926:G:A	rs10020123	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr4	126267855	126267856	chr4:126267856:C:G	rs11730201	C	G	C	Sox1.mouse_HMG_2	10	1	-	4.3141915471755485	0.21884748462036552	GTGAATTCCAGTAAA
chr4	126267883	126267884	chr4:126267884:C:A	rs75781349	C	A	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	126740339	126740340	chr4:126740340:C:A	rs17011535	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	126794458	126794459	chr4:126794459:T:A	rs76180920	T	A	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	126799307	126799308	chr4:126799308:A:T	rs12641236	A	T	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	126844070	126844071	chr4:126844071:C:T	rs79042149	C	T	c	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	126874444	126874445	chr4:126874445:G:A	rs556149809	G	A	g	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	126935947	126935948	chr4:126935948:C:T	rs62324472	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	126939893	126939894	chr4:126939894:T:C	rs10002550	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	127179280	127179281	chr4:127179281:T:C	rs4470646	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr4	127416255	127416256	chr4:127416256:G:A	rs2034077	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	127449074	127449075	chr4:127449075:C:T	rs55702172	C	T	C	Sox1.mouse_HMG_2	2	1	-	7.968905201940598	3.323502668924378	TTGAATACCATACAA
chr4	127850053	127850054	chr4:127850054:G:A	rs116638511	G	A	G	Sox1.mouse_HMG_2	8	1	-	6.640005952727363	0.995579262345376	GTGAATCTCATTTAT
chr4	128258430	128258431	chr4:128258431:A:G	rs1851399	A	G	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	128380397	128380398	chr4:128380398:G:T	rs17013197	G	T	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	128387036	128387037	chr4:128387037:G:A	rs34526083	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	128387046	128387047	chr4:128387047:C:G	rs1040370123	C	G	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr4	128388838	128388839	chr4:128388839:G:A	rs116604818	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	128527462	128527463	chr4:128527463:G:A	rs143211813	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	128544785	128544786	chr4:128544786:G:A	rs17013424	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	128552963	128552964	chr4:128552964:C:T	rs1327608535	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	128638317	128638318	chr4:128638318:G:A	rs1216351	G	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	128660835	128660836	chr4:128660836:G:A	rs76655811	G	A	G	Sox1.mouse_HMG_2	2	1	+	9.500385707845455	4.854983174829237	ATGACTAATATTCAT
chr4	129091380	129091381	chr4:129091381:A:C	rs72927912	A	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	129139074	129139075	chr4:129139075:A:G	rs11946237	A	G	G	Sox1.mouse_HMG_2	13	1	+	8.756253279768766	3.810135591996117	GTGAATATCGTTCAT
chr4	129604732	129604733	chr4:129604733:A:G	rs62309525	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	129616070	129616071	chr4:129616071:C:T	rs610734	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	129671701	129671702	chr4:129671702:G:T	rs17050588	G	T	T	Sox1.mouse_HMG_2	12	1	+	8.453915260730744	10.68177680752885	TTGAATTCCATTGAT
chr4	129734517	129734518	chr4:129734518:T:C	rs10020857	T	C	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	130053822	130053823	chr4:130053823:A:C	rs11729475	A	C	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	130073467	130073468	chr4:130073468:G:A	rs55653883	G	A	G	Sox1.mouse_HMG_2	8	1	+	5.520441051488491	6.3894788985121	TTGAATTAGATTCTA
chr4	130673258	130673259	chr4:130673259:C:A	rs10004821	C	A	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	130826805	130826806	chr4:130826806:G:A	rs12645823	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	131514507	131514508	chr4:131514508:G:C	rs55733408	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr4	131555170	131555171	chr4:131555171:G:T	rs116371452	G	T	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	131883476	131883477	chr4:131883477:G:T	rs164399	G	T	T	Sox1.mouse_HMG_2	7	1	+	5.281628763561584	5.125054408727483	ATGAATAGGATTTAG
chr4	132108947	132108948	chr4:132108948:G:C	rs75232366	G	C	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	132108948	132108949	chr4:132108949:T:A	rs10010474	T	A	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	132108958	132108959	chr4:132108959:G:A	rs541911541	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	132594013	132594014	chr4:132594014:A:T	rs72682559	A	T	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	133128805	133128806	chr4:133128806:C:G	rs2419947	C	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	133643058	133643059	chr4:133643059:G:A	rs1354857	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	134148302	134148303	chr4:134148303:T:C	rs73859881	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	134390132	134390133	chr4:134390133:T:G	rs17036739	T	G	T	Sox1.mouse_HMG_2	11	1	+	4.2162267220644605	-2.6925280572507604	GAGATTTACATTCAT
chr4	134421620	134421621	chr4:134421621:G:A	rs7692107	G	A	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	134544497	134544498	chr4:134544498:T:C	rs4576064	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	134816911	134816912	chr4:134816912:G:A	rs13434583	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.371843270491486	-0.27258341989050094	CTTAATGCCAGTCAT
chr4	134816926	134816927	chr4:134816927:C:T	rs62314823	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	134846897	134846898	chr4:134846898:C:T	rs9995885	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	134859216	134859217	chr4:134859217:T:G	rs10029269	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.625830928811947	-0.3226325577598609	ATGGCTATCAGTCAT
chr4	135460051	135460052	chr4:135460052:C:T	rs12646042	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	135545694	135545695	chr4:135545695:A:C	rs12503254	A	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	135714874	135714875	chr4:135714875:C:A	rs112927385	C	A	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	135735277	135735278	chr4:135735278:G:T	rs11736828	G	T	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	135791866	135791867	chr4:135791867:G:A	rs12648578	G	A	G	Sox1.mouse_HMG_2	8	1	-	6.089625608628273	0.4451989182462867	GTAAATGACATTCTG
chr4	136603323	136603324	chr4:136603324:C:A	rs4304024	C	A	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	136810799	136810800	chr4:136810800:G:T	rs62313714	G	T	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr4	136819391	136819392	chr4:136819392:C:T	rs75820331	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	136819440	136819441	chr4:136819441:T:C	rs898427	T	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr4	137039689	137039690	chr4:137039690:T:C	rs645907	T	C	t	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	137129870	137129871	chr4:137129871:T:A	rs60836162	T	A	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	137252185	137252186	chr4:137252186:T:C	rs1365142	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	137310855	137310856	chr4:137310856:C:A	rs2194926	C	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	137437295	137437296	chr4:137437296:A:C	rs6855494	A	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	137446558	137446559	chr4:137446559:C:A	rs4398579	C	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr4	137655380	137655381	chr4:137655381:T:C	rs2434138	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	137739665	137739666	chr4:137739666:G:A	rs144743514	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr4	138217627	138217628	chr4:138217628:T:C	rs75634630	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.91666347270708	-1.9920913066081387	AGAAATTTCATTCAA
chr4	138243233	138243234	chr4:138243234:A:G	rs28364685	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	138610175	138610176	chr4:138610176:A:C	rs550258145	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	138610181	138610182	chr4:138610182:A:T	rs17050544	A	T	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	138650728	138650729	chr4:138650729:T:C	rs6535613	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	138650732	138650733	chr4:138650733:A:C	rs4863581	A	C	C	Sox1.mouse_HMG_2	3	1	+	6.861284938418843	-0.04746984089637685	GTGAAAAACAGTCAT
chr4	138735629	138735630	chr4:138735630:T:A	rs76295005	T	A	T	Sox1.mouse_HMG_2	13	1	-	4.7359618085243556	1.5415982553660634	CTGACTGACAGTTAC
chr4	138736011	138736012	chr4:138736012:T:C	rs1291936268	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	138772513	138772514	chr4:138772514:G:T	rs28726321	G	T	G	Sox1.mouse_HMG_2	6	1	+	4.493859599400839	5.093031586528083	CTCACTGCCAGTCAT
chr4	138954159	138954160	chr4:138954160:C:G	rs909941895	C	G	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	139280438	139280439	chr4:139280439:C:T	rs1298031458	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr4	139559623	139559624	chr4:139559624:T:C	rs6846949	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.902315657393162	-1.9190971117669091	ATGAATAAAATTAAC
chr4	139798732	139798733	chr4:139798733:C:T	rs17050916	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	140048238	140048239	chr4:140048239:A:G	rs67285285	A	G	A	Sox1.mouse_HMG_2	4	1	+	13.474880738560893	6.653467969400821	ATGAATATCATTCTT
chr4	140189250	140189251	chr4:140189251:T:C	rs911953358	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	140238081	140238082	chr4:140238082:T:G	rs17005652	T	G	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	140322433	140322434	chr4:140322434:G:A	rs1588615	G	A	A	Sox1.mouse_HMG_2	2	1	+	3.8262733623292693	-0.8191291706869472	GTGAAGGACATTCTG
chr4	140653905	140653906	chr4:140653906:G:A	rs141851131	G	A	G	Sox1.mouse_HMG_2	14	1	-	3.251694889415476	4.126307232138212	CTGATTTCCATTTAC
chr4	140712290	140712291	chr4:140712291:T:C	rs6856960	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	140965120	140965121	chr4:140965121:T:C	rs12499713	T	C	T	Sox1.mouse_HMG_2	9	1	-	9.248187661519706	2.3394328822044876	CTGAAAAGCATTCAT
chr4	141006706	141006707	chr4:141006707:G:C	rs2321691	G	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	141011826	141011827	chr4:141011827:G:C	rs12509205	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	141059262	141059263	chr4:141059263:G:T	rs115034222	G	T	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr4	141207503	141207504	chr4:141207504:C:A	rs12642386	C	A	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	141654414	141654415	chr4:141654415:A:C	rs115468796	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	141899923	141899924	chr4:141899924:G:T	rs6842837	G	T	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	141912708	141912709	chr4:141912709:G:A	rs1392773	G	A	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr4	142065300	142065301	chr4:142065301:C:T	rs189211	C	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr4	142252507	142252508	chr4:142252508:A:G	rs2636660	A	G	G	Sox1.mouse_HMG_2	9	1	+	4.56070115139184	-2.3480536279233797	TTTACTAACAGTCAT
chr4	142302190	142302191	chr4:142302191:A:G	rs3775689	A	G	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	142302221	142302222	chr4:142302222:T:C	rs3822151	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr4	142314567	142314568	chr4:142314568:T:C	rs11945996	T	C	t	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	142347731	142347732	chr4:142347732:A:G	rs1994555	A	G	G	Sox1.mouse_HMG_2	3	1	+	5.273071559744833	-1.6356832195703879	AAGAAAAGCATTCAT
chr4	142664035	142664036	chr4:142664036:G:A	rs74568308	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	142961958	142961959	chr4:142961959:A:C	rs11936087	A	C	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	143056239	143056240	chr4:143056240:A:G	rs6857448	A	G	A	Sox1.mouse_HMG_2	0	1	+	5.38435489300791	4.380118660372709	ATGACTTTCCTTCAG
chr4	143252151	143252152	chr4:143252152:C:T	rs300940	C	T	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	143263039	143263040	chr4:143263040:C:T	rs300925	C	T	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr4	143294210	143294211	chr4:143294211:T:C	rs1108827	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	143294254	143294255	chr4:143294255:C:G	rs17017555	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	143345792	143345793	chr4:143345793:C:G	rs114626322	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr4	143345825	143345826	chr4:143345826:C:T	rs300918	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr4	143726892	143726893	chr4:143726893:T:G	rs1375989	T	G	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	143854709	143854710	chr4:143854710:G:A	rs62337340	G	A	.	Sox1.mouse_HMG_2	14	1	-	4.855706927934418	5.730319270657154	CTGCCTGCCATTCAC
chr4	143986488	143986489	chr4:143986489:T:C	rs6537231	T	C	c	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	144141117	144141118	chr4:144141118:T:C	rs36211745	T	C	.	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	145320683	145320684	chr4:145320684:A:C	rs13105189	A	C	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr4	145437119	145437120	chr4:145437120:C:T	rs472730	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	145490037	145490038	chr4:145490038:A:T	rs768139	A	T	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	145490038	145490039	chr4:145490039:A:C	rs959641	A	C	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	145502245	145502246	chr4:145502246:A:G	rs17020248	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	145554824	145554825	chr4:145554825:T:C	rs17020321	T	C	C	Sox1.mouse_HMG_2	11	1	+	7.113860428080547	0.20510564876532636	ATAAATTTCATTCTC
chr4	145655265	145655266	chr4:145655266:G:C	rs2270655	G	C	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	145887384	145887385	chr4:145887385:A:C	chr4:145887385:A:C	A	C	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	146311550	146311551	chr4:146311551:A:G	rs13117626	A	G	A	Sox1.mouse_HMG_2	14	1	-	2.3692561551955893	1.4946438124728534	GTGAAGACCAATCAT
chr4	147102675	147102676	chr4:147102676:C:T	rs13146801	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	147102676	147102677	chr4:147102677:A:G	rs13121954	A	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	147341191	147341192	chr4:147341192:C:T	rs2562880	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	147388198	147388199	chr4:147388199:G:A	rs150075382	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr4	147388216	147388217	chr4:147388217:A:C	rs13140736	A	C	A	Sox1.mouse_HMG_2	4	1	+	15.665008059083986	13.282946991217061	GTGAATATCATTCAT
chr4	147498217	147498218	chr4:147498218:C:T	rs1400554	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	147809489	147809490	chr4:147809490:A:T	rs4835456	A	T	A	Sox1.mouse_HMG_2	1	1	-	4.079238281449953	-0.5647540260432792	TTGAATTGCAGTGAA
chr4	147994592	147994593	chr4:147994593:A:G	rs17024245	A	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	148086340	148086341	chr4:148086341:T:C	rs6832062	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.104526148369493	-1.8042286309457287	ATGGATTACATTTAT
chr4	148226476	148226477	chr4:148226477:T:C	rs62332028	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	148348483	148348484	chr4:148348484:C:T	rs992556	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr4	148375963	148375964	chr4:148375964:A:G	rs61763765	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	148828339	148828340	chr4:148828340:G:A	rs1523005	G	A	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	149228110	149228111	chr4:149228111:T:C	rs78559531	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	150059486	150059487	chr4:150059487:T:C	rs10014266	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr4	150236709	150236710	chr4:150236710:T:C	rs1459747	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	150283699	150283700	chr4:150283700:C:T	rs114767081	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	150346098	150346099	chr4:150346099:C:T	rs4696299	C	T	c	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	150363814	150363815	chr4:150363815:T:C	rs17504324	T	C	t	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	150363829	150363830	chr4:150363830:G:A	rs7657948	G	A	a	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr4	150679647	150679648	chr4:150679648:G:C	chr4:150679648:G:C	G	C	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr4	150680931	150680932	chr4:150680932:C:T	rs4336207	C	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr4	150938521	150938522	chr4:150938522:T:C	rs1201198	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	151232707	151232708	chr4:151232708:A:G	rs4696237	A	G	A	Sox1.mouse_HMG_2	6	1	+	3.701586313485596	2.261408891616957	GTGACTACCACTCTT
chr4	151315066	151315067	chr4:151315067:C:G	rs2407170	C	G	G	Sox1.mouse_HMG_2	12	1	+	3.557352702075133	-3.3430959483912304	AGGGATTCCATTCAC
chr4	151574165	151574166	chr4:151574166:C:T	rs61653326	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr4	151743757	151743758	chr4:151743758:A:G	chr4:151743758:A:G	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	151796277	151796278	chr4:151796278:T:C	rs4696295	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	151842885	151842886	chr4:151842886:C:G	rs173412	C	G	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr4	152075348	152075349	chr4:152075349:G:A	rs62318969	G	A	g	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	152182554	152182555	chr4:152182555:G:A	rs13128788	G	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	152697168	152697169	chr4:152697169:A:G	rs139234094	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	152917741	152917742	chr4:152917742:C:A	rs75236376	C	A	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	152917780	152917781	chr4:152917781:C:T	rs7688178	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr4	152982963	152982964	chr4:152982964:T:C	rs59757285	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	152999426	152999427	chr4:152999427:G:A	rs12504106	G	A	G	Sox1.mouse_HMG_2	6	1	+	3.1372228625858947	4.577400284454534	AGGAATGACACTCAG
chr4	153074895	153074896	chr4:153074896:T:C	rs35730774	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	153114807	153114808	chr4:153114808:A:C	rs11725217	A	C	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	153119446	153119447	chr4:153119447:C:T	rs186926385	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr4	153222700	153222701	chr4:153222701:C:T	rs533123973	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr4	153345710	153345711	chr4:153345711:A:T	rs939574903	A	T	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	153438584	153438585	chr4:153438585:T:C	rs17029999	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr4	153450818	153450819	chr4:153450819:T:C	rs11099882	T	C	C	Sox1.mouse_HMG_2	14	1	+	6.419518900985648	5.544906558262912	GTGTATAACATTCTT
chr4	153465270	153465271	chr4:153465271:C:G	rs6850866	C	G	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	153518966	153518967	chr4:153518967:C:T	rs114696175	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	153519998	153519999	chr4:153519999:T:C	rs34536783	T	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	153519998	153519999	chr4:153519999:T:G	chr4:153519999:T:G	T	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	153523323	153523324	chr4:153523324:G:C	rs17030067	G	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr4	153536106	153536107	chr4:153536107:G:A	rs991431615	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	153549602	153549603	chr4:153549603:G:C	rs9994000	G	C	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	153549606	153549607	chr4:153549607:A:G	rs10016276	A	G	A	Sox1.mouse_HMG_2	14	1	-	6.034939580320847	5.160327237598111	AAGAATAACAATCAT
chr4	154037167	154037168	chr4:154037168:A:G	rs11947566	A	G	G	Sox1.mouse_HMG_2	4	1	+	3.8972911565588295	-2.9241216126012435	CTGAATGACAATTAT
chr4	154079040	154079041	chr4:154079041:A:G	rs75103276	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	154189529	154189530	chr4:154189530:A:T	rs73857210	A	T	A	Sox1.mouse_HMG_2	7	1	+	6.056089428843517	5.198460254468341	TTGGATAACAGTCAC
chr4	154467847	154467848	chr4:154467848:A:C	rs56137436	A	C	A	Sox1.mouse_HMG_2	10	1	-	11.386993222285366	8.634395706560268	TTGAATATCATTCTG
chr4	154526245	154526246	chr4:154526246:A:G	rs35801300	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.428943222084038	-1.4189983561962438	TGGAATTGCATTTAT
chr4	155419388	155419389	chr4:155419389:G:A	chr4:155419389:G:A	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr4	155536279	155536280	chr4:155536280:C:T	rs72968309	C	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	155629789	155629790	chr4:155629790:T:C	rs727773	T	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr4	155631373	155631374	chr4:155631374:G:A	rs11941811	G	A	A	Sox1.mouse_HMG_2	2	1	+	3.381798516679646	-1.263604016336569	ATGAATACCAATAAT
chr4	155648048	155648049	chr4:155648049:G:A	rs2062175	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.048984117256082	1.404557426874095	TTGAATTGCAATCAG
chr4	155822720	155822721	chr4:155822721:C:T	rs142155109	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr4	155982459	155982460	chr4:155982460:G:T	rs4691200	G	T	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr4	156085914	156085915	chr4:156085915:C:T	rs11100042	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	156111845	156111846	chr4:156111846:T:G	rs115931122	T	G	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	156111867	156111868	chr4:156111868:A:G	rs79965645	A	G	A	Sox1.mouse_HMG_2	6	1	+	5.620977803071876	4.180800381203235	CTGAATAGCAGGCAC
chr4	156245912	156245913	chr4:156245913:G:C	rs13123051	G	C	G	Sox1.mouse_HMG_2	0	1	-	7.567181413193863	7.231821386277019	CTGACCAACATTCAT
chr4	156481369	156481370	chr4:156481370:T:C	rs1490568	T	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	156495508	156495509	chr4:156495509:A:C	rs77621671	A	C	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr4	156583507	156583508	chr4:156583508:T:C	rs68191523	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	156595122	156595123	chr4:156595123:C:T	rs34915214	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	156629028	156629029	chr4:156629029:C:A	rs17316908	C	A	C	Sox1.mouse_HMG_2	10	1	-	2.673351656059051	5.425949171784148	CTGGCTGGCAGTCAT
chr4	156629057	156629058	chr4:156629058:C:T	rs115346770	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	157096616	157096617	chr4:157096617:T:G	rs940695745	T	G	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	157247394	157247395	chr4:157247395:G:A	rs10461267	G	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	157812852	157812853	chr4:157812853:C:G	rs115816321	C	G	C	Sox1.mouse_HMG_2	2	1	-	11.055421491520255	5.662804556673816	TTGACTGCCATTCAA
chr4	157979375	157979376	chr4:157979376:T:C	rs1482941743	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	158137811	158137812	chr4:158137812:A:C	rs7671501	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	158147142	158147143	chr4:158147143:A:G	rs2346782	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	158758324	158758325	chr4:158758325:C:A	rs11938591	C	A	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	158827946	158827947	chr4:158827947:T:C	rs750868448	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.708913390905854	-2.199841388409365	TGCAATTGCATTCAT
chr4	158856962	158856963	chr4:158856963:A:G	rs143892299	A	G	A	Sox1.mouse_HMG_2	6	1	-	3.9905182121533294	0.47910864420635785	CTGAGTTTCATTCTG
chr4	158938777	158938778	chr4:158938778:C:T	rs17037755	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	159051842	159051843	chr4:159051843:G:C	rs116757451	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	159506640	159506641	chr4:159506641:C:T	rs1317266	C	T	T	Sox1.mouse_HMG_2	2	1	-	4.727991267585122	0.08258873456890617	TTGTCTTTCATTCAC
chr4	159562797	159562798	chr4:159562798:C:T	rs6823356	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	159607440	159607441	chr4:159607441:C:T	rs7682849	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	160020288	160020289	chr4:160020289:C:T	rs561261575	C	T	-	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr4	160077273	160077274	chr4:160077274:G:A	rs11725896	G	A	A	Sox1.mouse_HMG_2	7	1	-	5.483581864511687	5.02263741080458	CTGAATACCTTTCTC
chr4	160202606	160202607	chr4:160202607:C:G	rs79025849	C	G	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr4	160247325	160247326	chr4:160247326:A:G	rs67618152	A	G	a	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	160251760	160251761	chr4:160251761:A:G	rs147104532	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	160315891	160315892	chr4:160315892:G:A	rs4364218	G	A	a	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr4	160320193	160320194	chr4:160320194:C:G	rs66476814	C	G	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	161744401	161744402	chr4:161744402:T:A	rs17041437	T	A	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	161854263	161854264	chr4:161854264:G:A	rs1440585	G	A	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr4	161983296	161983297	chr4:161983297:C:T	rs10028812	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr4	162157579	162157580	chr4:162157580:C:T	rs7689130	C	T	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr4	162892357	162892358	chr4:162892358:C:A	rs75694467	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	163078000	163078001	chr4:163078001:G:C	rs57028884	G	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	163382332	163382333	chr4:163382333:T:C	rs28507826	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	163681056	163681057	chr4:163681057:C:T	rs6826691	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	163699062	163699063	chr4:163699063:G:A	rs1170303	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	163816406	163816407	chr4:163816407:A:G	rs1353215	A	G	G	Sox1.mouse_HMG_2	0	1	-	5.878355551888261	6.144298745657694	TTGAATACTATTTAT
chr4	163833806	163833807	chr4:163833807:G:A	rs76919119	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	164001752	164001753	chr4:164001753:T:C	rs72687968	T	C	T	Sox1.mouse_HMG_2	2	1	-	3.730789765718259	8.376192298734477	GTAAATTCCATCCAT
chr4	164058491	164058492	chr4:164058492:T:C	rs6536786	T	C	T	Sox1.mouse_HMG_2	13	1	-	6.79467097384139	1.8485532860687415	CTGAATGCCATGCAA
chr4	164249255	164249256	chr4:164249256:G:A	rs4496540	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr4	164701969	164701970	chr4:164701970:T:C	rs74525373	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr4	164749119	164749120	chr4:164749120:C:G	rs28587555	C	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	164770473	164770474	chr4:164770474:G:A	rs114533578	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.787538972461421	5.488593792002496	GGAAATGGCATTCAT
chr4	164934042	164934043	chr4:164934043:A:G	rs56411534	A	G	a	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	164951434	164951435	chr4:164951435:A:G	rs4541460	A	G	-	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	165190759	165190760	chr4:165190760:A:G	rs13110248	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	165203229	165203230	chr4:165203230:G:A	rs17172935	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	165332772	165332773	chr4:165332773:G:C	rs3943705	G	C	G	Sox1.mouse_HMG_2	14	1	-	5.526004140325465	5.247548366260463	ACAAATGCCATTCAC
chr4	165418171	165418172	chr4:165418172:G:A	rs13141616	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	165418208	165418209	chr4:165418209:C:T	rs10471062	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	165553820	165553821	chr4:165553821:G:A	rs9992314	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	166066598	166066599	chr4:166066599:G:A	rs6536943	G	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	166298189	166298190	chr4:166298190:A:G	rs57312560	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.528422958797619	-1.4176947289750292	AGGAATGGCATACAT
chr4	168361702	168361703	chr4:168361703:G:C	rs13118834	G	C	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	168604072	168604073	chr4:168604073:T:C	rs62335530	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	168605472	168605473	chr4:168605473:C:G	rs78582393	C	G	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr4	168605492	168605493	chr4:168605493:G:A	rs62335532	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	168622373	168622374	chr4:168622374:T:A	rs144041899	T	A	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	168735944	168735945	chr4:168735945:T:G	rs1500800	T	G	T	Sox1.mouse_HMG_2	0	1	+	6.571567624927617	6.502150791780206	TTGACTAACATTCCA
chr4	168769188	168769189	chr4:168769189:A:G	rs78542922	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr4	168796377	168796378	chr4:168796378:C:T	rs557892412	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	168796397	168796398	chr4:168796398:T:G	rs957340982	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.638575847620642	-0.3098876389511705	GTGTCTGACATTCAG
chr4	169044952	169044953	chr4:169044953:C:T	rs34478693	C	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	169045899	169045900	chr4:169045900:G:T	rs4692691	G	T	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr4	169092758	169092759	chr4:169092759:T:C	rs17626617	T	C	T	Sox1.mouse_HMG_2	14	1	-	3.703832209407377	3.8684734573023247	TTGAGTCCCATTCAA
chr4	169315080	169315081	chr4:169315081:G:A	rs185478652	G	A	g	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr4	169315110	169315111	chr4:169315111:C:T	rs182780195	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	169384787	169384788	chr4:169384788:A:G	rs57077731	A	G	A	Sox1.mouse_HMG_2	14	1	-	3.801616824388653	2.927004481665917	TAGGATTCCATTCAT
chr4	169657850	169657851	chr4:169657851:C:A	rs17627811	C	A	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr4	170138956	170138957	chr4:170138957:A:C	chr4:170138957:A:C	A	C	A	Sox1.mouse_HMG_2	13	1	+	3.8645859612745044	-2.4561300478548427	CTGAACCTCATTCAC
chr4	170272021	170272022	chr4:170272022:C:T	rs4692816	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	170527556	170527557	chr4:170527557:T:C	rs4692842	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	170873035	170873036	chr4:170873036:C:T	rs1367998	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr4	171236164	171236165	chr4:171236165:T:C	rs10016739	T	C	C	Sox1.mouse_HMG_2	4	1	-	7.4237551336208485	0.6023423644607772	ATGAAGAACATTCTT
chr4	171236187	171236188	chr4:171236188:G:A	rs10024424	G	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	171641883	171641884	chr4:171641884:A:G	rs13151144	A	G	A	Sox1.mouse_HMG_2	6	1	-	3.5916742359375613	0.08026466799059045	AAGAATTCCATTGAG
chr4	171794043	171794044	chr4:171794044:A:C	rs7665491	A	C	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr4	171928521	171928522	chr4:171928522:A:G	rs79106567	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.041954849868257	-2.8059867284120235	ATGAACATGATTCAT
chr4	171982263	171982264	chr4:171982264:C:T	rs17057824	C	T	C	Sox1.mouse_HMG_2	8	1	+	12.408334648494327	6.763907958112341	GTGACTATCATTCAC
chr4	172022705	172022706	chr4:172022706:A:T	rs7700075	A	T	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	172022739	172022740	chr4:172022740:G:A	rs17057887	G	A	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	172245592	172245593	chr4:172245593:T:C	rs58932805	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.2265325958288162	-3.682222183486405	ATGAATCACAGTCCC
chr4	172344842	172344843	chr4:172344843:G:A	rs28691833	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr4	172376412	172376413	chr4:172376413:G:A	rs73868985	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	172376445	172376446	chr4:172376446:G:A	rs79173293	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	172766735	172766736	chr4:172766736:T:G	rs7699455	T	G	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr4	172900713	172900714	chr4:172900714:C:T	rs114368816	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	173178470	173178471	chr4:173178471:G:A	rs36050097	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr4	173252558	173252559	chr4:173252559:C:G	chr4:173252559:C:G	C	G	C	Sox1.mouse_HMG_2	12	1	+	14.876436289142442	7.975987638676078	TTGAATTACATTCAC
chr4	173302913	173302914	chr4:173302914:A:C	rs12186296	A	C	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr4	173337595	173337596	chr4:173337596:T:C	rs78881933	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	173491422	173491423	chr4:173491423:A:C	rs986557562	A	C	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr4	173536704	173536705	chr4:173536705:T:G	rs55695852	T	G	T	Sox1.mouse_HMG_2	0	1	+	5.754098655806262	5.684681822658851	TGGAATTGCATTCTG
chr4	173626543	173626544	chr4:173626544:G:A	rs11946245	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	173758469	173758470	chr4:173758470:G:A	rs11932043	G	A	A	Sox1.mouse_HMG_2	2	1	+	6.017299122794142	1.3718965897779247	TTGAATCCCATTTAG
chr4	173781291	173781292	chr4:173781292:G:A	rs115950673	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr4	174204511	174204512	chr4:174204512:T:C	rs35750280	T	C	t	Sox1.mouse_HMG_2	5	1	+	8.093570946699545	1.1848161673843243	AGGAATATCAGTCAC
chr4	174419104	174419105	chr4:174419105:G:C	rs188728388	G	C	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	174419105	174419106	chr4:174419106:C:G	rs77745467	C	G	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	174629764	174629765	chr4:174629765:C:T	rs111257833	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr4	174682141	174682142	chr4:174682142:G:A	rs72706156	G	A	G	Sox1.mouse_HMG_2	7	1	-	6.802977102690246	6.342032648983139	CTGAATGCCATTAAA
chr4	174855328	174855329	chr4:174855329:T:C	rs4124449	T	C	t	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	175325526	175325527	chr4:175325527:G:T	rs183211026	G	T	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr4	176302892	176302893	chr4:176302893:G:A	rs28604392	G	A	A	Sox1.mouse_HMG_2	12	1	-	3.0335187272879907	-1.639068376380264	CTGAAAACTATTCAC
chr4	176453920	176453921	chr4:176453921:A:G	rs4558817	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.220462954699662	4.345850611976926	AAGATTTACATTCAT
chr4	176656360	176656361	chr4:176656361:A:G	rs77580974	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.2389167352049535	-3.669838044110266	CTGTCTAGCAGTCAC
chr4	176656374	176656375	chr4:176656375:G:A	rs539165525	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	176665807	176665808	chr4:176665808:T:C	rs6857881	T	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	177009033	177009034	chr4:177009034:A:T	rs17090605	A	T	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr4	177229536	177229537	chr4:177229537:G:A	rs62342451	G	A	g	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	177234996	177234997	chr4:177234997:A:G	rs56122084	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr4	177455483	177455484	chr4:177455484:A:G	rs2333649	A	G	A	Sox1.mouse_HMG_2	9	1	+	2.702281399336564	-4.206473379978656	CTGCCTTCCAGTCAC
chr4	177472266	177472267	chr4:177472267:G:A	rs114004116	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr4	177495386	177495387	chr4:177495387:C:T	rs28695903	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	178182146	178182147	chr4:178182147:G:A	rs13145748	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	178344368	178344369	chr4:178344369:G:A	rs6848351	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	178383461	178383462	chr4:178383462:A:G	rs2666081	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr4	178471793	178471794	chr4:178471794:T:G	rs1903564	T	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	179284581	179284582	chr4:179284582:T:C	rs17067323	T	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	179334306	179334307	chr4:179334307:G:T	rs62340459	G	T	G	Sox1.mouse_HMG_2	2	1	+	4.960684890853708	-1.936009440769004	TAGAATGACATTTAC
chr4	179479743	179479744	chr4:179479744:G:T	rs79512302	G	T	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr4	179626922	179626923	chr4:179626923:T:C	rs3849606	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	179836936	179836937	chr4:179836937:G:A	rs7685600	G	A	.	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr4	179952491	179952492	chr4:179952492:G:A	rs764539809	G	A	g	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr4	179952516	179952517	chr4:179952517:C:T	rs10030487	C	T	-	Sox1.mouse_HMG_2	7	1	-	5.214478208725948	5.915533028267024	GAAAATAGCATTCAA
chr4	180764940	180764941	chr4:180764941:T:G	rs3095895	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	180867574	180867575	chr4:180867575:C:T	rs7693959	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	180900953	180900954	chr4:180900954:C:T	rs1589579	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.411748980340323	-0.23365355267589372	AAGAATAAGAGTCAT
chr4	180900972	180900973	chr4:180900973:C:A	rs1589578	C	A	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr4	180925868	180925869	chr4:180925869:C:A	rs115640507	C	A	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	180933960	180933961	chr4:180933961:T:C	rs72688661	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.4007547167618855	-2.5080000625533345	GTGCATAGCATTCTA
chr4	181078130	181078131	chr4:181078131:A:G	rs11946832	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr4	181157742	181157743	chr4:181157743:A:C	rs12507155	A	C	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	181287710	181287711	chr4:181287711:A:G	rs1454695	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr4	181461930	181461931	chr4:181461931:T:C	rs11132063	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.093839629029545	-1.8149151502856755	TTGAATGCCAGACAT
chr4	181468509	181468510	chr4:181468510:C:T	rs4861964	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr4	181968301	181968302	chr4:181968302:G:A	rs7671091	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr4	182068047	182068048	chr4:182068048:C:T	rs2609551	C	T	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr4	182142159	182142160	chr4:182142160:A:G	rs11132114	A	G	G	Sox1.mouse_HMG_2	0	1	+	4.812026025832157	3.8077897931969527	AGGGATATCATTCAT
chr4	182272681	182272682	chr4:182272682:C:T	rs62354207	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	182595567	182595568	chr4:182595568:G:T	rs1514480	G	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	183030431	183030432	chr4:183030432:T:C	rs747368	T	C	t	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	183119205	183119206	chr4:183119206:C:T	rs72691683	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr4	183143310	183143311	chr4:183143311:A:C	rs56038937	A	C	A	Sox1.mouse_HMG_2	4	1	+	5.693011616156789	3.3109505482898673	TTGCATTCCAGTCAT
chr4	183299309	183299310	chr4:183299310:G:A	rs11732052	G	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr4	183363067	183363068	chr4:183363068:G:A	rs1027984	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr4	183414152	183414153	chr4:183414153:T:C	rs4415002	T	C	C	Sox1.mouse_HMG_2	13	1	-	7.8869470293083825	2.940829341535734	GTAAATTCCAGTCAT
chr4	183420141	183420142	chr4:183420142:T:C	rs4241766	T	C	t	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr4	183436853	183436854	chr4:183436854:G:A	rs72705593	G	A	G	Sox1.mouse_HMG_2	14	1	-	4.635458461188887	5.510070803911623	CTTAATTTCAGTCAC
chr4	183660474	183660475	chr4:183660475:T:G	rs11132202	T	G	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	183660539	183660540	chr4:183660540:A:G	rs55807103	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	183828444	183828445	chr4:183828445:A:G	rs55977186	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.056244318785921	-1.8525104605293001	CTGTATTTCATTCTT
chr4	183867865	183867866	chr4:183867866:C:T	rs11946426	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	183957985	183957986	chr4:183957986:G:T	rs11946422	G	T	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr4	184058098	184058099	chr4:184058099:G:C	rs4862295	G	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	184064855	184064856	chr4:184064856:C:T	rs6827220	C	T	T	Sox1.mouse_HMG_2	2	1	-	4.836955894314794	0.19155336129857903	AGGAATTACATTAAT
chr4	184139029	184139030	chr4:184139030:A:G	rs6816704	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr4	184254339	184254340	chr4:184254340:A:G	rs2136757	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.8972497535273165	-0.9241630156327573	CTGAATATCTTTCTT
chr4	184293819	184293820	chr4:184293820:G:A	rs1704846	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.158917012075129	-0.48550967830685765	ATAAATAACAATCAC
chr4	184326964	184326965	chr4:184326965:T:C	rs6828196	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr4	184327633	184327634	chr4:184327634:A:G	rs536630849	A	G	A	Sox1.mouse_HMG_2	11	1	+	4.833802471779253	4.833802471779253	TTGAATAAAATACAT
chr4	184424935	184424936	chr4:184424936:A:G	rs10011243	A	G	G	Sox1.mouse_HMG_2	0	1	+	3.7853243300640638	2.781088097428863	ATCCATGACATTCAT
chr4	184432251	184432252	chr4:184432252:T:A	rs889132244	T	A	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr4	184432278	184432279	chr4:184432279:C:T	rs72703773	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr4	184434726	184434727	chr4:184434727:G:A	rs12643218	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr4	184756955	184756956	chr4:184756956:A:G	rs2292899	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.0989661200046337	-1.5450261874885982	CTGCCTTACAGTCAC
chr4	184762560	184762561	chr4:184762561:G:A	chr4:184762561:G:A	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr4	184860145	184860146	chr4:184860146:T:C	rs4862439	T	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr4	184896680	184896681	chr4:184896681:G:C	rs76049719	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr4	184970279	184970280	chr4:184970280:T:C	rs13108248	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr4	185026639	185026640	chr4:185026640:A:G	rs146767167	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.631803974585106	-2.2769508047301152	GGCAATACCATTCAG
chr4	185142186	185142187	chr4:185142187:G:A	rs10024068	G	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr4	185471613	185471614	chr4:185471614:C:G	rs756061636	C	G	c	Sox1.mouse_HMG_2	8	1	+	3.764948668578043	-1.9535859939576645	CTGAATGCCCTTCTG
chr4	185522948	185522949	chr4:185522949:C:T	rs3811825	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr4	185666340	185666341	chr4:185666341:G:A	rs73876138	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	185753101	185753102	chr4:185753102:T:C	rs1039233	T	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr4	185808638	185808639	chr4:185808639:C:T	rs878356	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr4	185888750	185888751	chr4:185888751:G:A	rs9998012	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr4	185888792	185888793	chr4:185888793:T:C	rs4862587	T	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	185914495	185914496	chr4:185914496:G:A	rs77932888	G	A	G	Sox1.mouse_HMG_2	13	1	-	9.048853107542076	12.175205563513131	GTGAATAACATTCCG
chr4	185934209	185934210	chr4:185934210:A:G	rs6552938	A	G	G	Sox1.mouse_HMG_2	14	1	+	5.2320395704853135	5.396680818380261	TTGAATAACAATCTA
chr4	186002963	186002964	chr4:186002964:C:T	rs77648738	C	T	C	Sox1.mouse_HMG_2	4	1	+	4.220907734852351	-0.21844396644080052	CAGACTTGCATTCTC
chr4	186002983	186002984	chr4:186002984:C:G	rs367589190	C	G	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr4	186018248	186018249	chr4:186018249:T:C	rs68094691	T	C	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr4	186128280	186128281	chr4:186128281:G:A	rs1715067	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr4	186201149	186201150	chr4:186201150:C:T	rs3817184	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr4	186266997	186266998	chr4:186266998:A:C	rs3822057	A	C	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr4	186472989	186472990	chr4:186472990:T:C	rs77491810	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	186473003	186473004	chr4:186473004:A:G	rs75209726	A	G	A	Sox1.mouse_HMG_2	7	1	+	4.053004093802912	3.3519492742618358	ATGAAGTAAATTCAC
chr4	186493030	186493031	chr4:186493031:A:G	rs2375800	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr4	186861259	186861260	chr4:186861260:T:C	rs73873906	T	C	T	Sox1.mouse_HMG_2	10	1	+	5.4167727426186385	-1.4311688356616425	CTGACTTACATTGAA
chr4	186926920	186926921	chr4:186926921:G:A	rs6829485	G	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr4	187289527	187289528	chr4:187289528:T:G	rs34007530	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr4	187289551	187289552	chr4:187289552:A:G	rs28567978	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr4	187304107	187304108	chr4:187304108:T:C	rs78003720	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr4	188196127	188196128	chr4:188196128:G:C	rs34862301	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr4	188312072	188312073	chr4:188312073:T:G	rs72711413	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr4	188439947	188439948	chr4:188439948:T:C	rs13151166	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr4	188864890	188864891	chr4:188864891:A:G	rs142729916	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr4	189029715	189029716	chr4:189029716:T:C	rs1349860910	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr4	189129541	189129542	chr4:189129542:T:C	rs4623064	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr4	189129547	189129548	chr4:189129548:C:A	rs4618357	C	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr4	189502970	189502971	chr4:189502971:C:A	rs28736290	C	A	c	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr5	76168	76169	chr5:76169:T:C	rs11746381	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	199562	199563	chr5:199563:T:G	rs11741320	T	G	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	433142	433143	chr5:433143:C:G	rs35664198	C	G	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	594871	594872	chr5:594872:A:C	rs72703078	A	C	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	993677	993678	chr5:993678:C:A	chr5:993678:C:A	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	999547	999548	chr5:999548:C:T	rs72705182	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	1287224	1287225	chr5:1287225:A:G	rs2736099	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	1292002	1292003	chr5:1292003:G:A	rs71595003	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	1300468	1300469	chr5:1300469:C:G	rs2735845	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr5	1593940	1593941	chr5:1593941:A:G	rs7734433	A	G	g	Sox1.mouse_HMG_2	5	1	-	3.964387994053461	-2.944366785261759	TGGAATATCAGTCTC
chr5	1677155	1677156	chr5:1677156:T:C	rs58453372	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	1842171	1842172	chr5:1842172:T:C	rs746703	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	2078528	2078529	chr5:2078529:G:A	rs72708664	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	2078554	2078555	chr5:2078555:T:C	rs72708665	T	C	C	Sox1.mouse_HMG_2	11	1	+	5.099745665548686	-1.8090091137665345	CTGAATAAAGTTCAT
chr5	2133277	2133278	chr5:2133278:G:A	rs932800946	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr5	2133297	2133298	chr5:2133298:G:A	rs6860349	G	A	A	Sox1.mouse_HMG_2	1	1	-	5.273792745323105	9.91778505281634	ACGACTCACATTCAC
chr5	2138055	2138056	chr5:2138056:C:A	rs13187481	C	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	2138059	2138060	chr5:2138060:G:C	rs13186322	G	C	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	2196582	2196583	chr5:2196583:C:T	rs142652699	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	2377292	2377293	chr5:2377293:A:C	rs559207918	A	C	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	2377314	2377315	chr5:2377315:T:C	rs674289	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	2517475	2517476	chr5:2517476:A:G	rs59789375	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	2617485	2617486	chr5:2617486:T:A	rs11750672	T	A	T	Sox1.mouse_HMG_2	5	1	+	4.980805214995255	-1.927949564319967	AAAACTAACATTCAC
chr5	3110033	3110034	chr5:3110034:G:A	rs160766	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	3204806	3204807	chr5:3204807:C:T	rs2439652	C	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	3285411	3285412	chr5:3285412:T:C	rs4546389	T	C	C	Sox1.mouse_HMG_2	10	1	+	3.836473980523246	-3.011467597757035	GGTAATTACATTCAT
chr5	3365949	3365950	chr5:3365950:C:T	rs112294828	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	3604563	3604564	chr5:3604564:C:A	rs6867483	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	3607301	3607302	chr5:3607302:C:A	rs1664711	C	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr5	3659582	3659583	chr5:3659583:C:G	rs7341156	C	G	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	3687453	3687454	chr5:3687454:C:A	rs4866462	C	A	A	Sox1.mouse_HMG_2	8	1	+	4.917031621685643	0.0675348061735456	GTGACTGACTTTCAC
chr5	3693471	3693472	chr5:3693472:T:G	rs10079908	T	G	G	Sox1.mouse_HMG_2	3	1	-	4.550837439394605	-2.3579173399206153	CTGACTTTCTTTCAA
chr5	3858914	3858915	chr5:3858915:T:C	rs2967824	T	C	C	Sox1.mouse_HMG_2	6	1	-	4.615553754479304	3.1753763326106648	ATGAACAAAATTCAG
chr5	3867207	3867208	chr5:3867208:G:A	rs6555236	G	A	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	3949566	3949567	chr5:3949567:C:T	rs639157	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	3954948	3954949	chr5:3954949:G:A	rs692992	G	A	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr5	3980207	3980208	chr5:3980208:T:C	rs74852359	T	C	T	Sox1.mouse_HMG_2	6	1	-	6.763185056751349	5.32300763488271	CTGAATAACATTATT
chr5	4013878	4013879	chr5:4013879:A:G	rs557286	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	4419438	4419439	chr5:4419439:G:A	rs10044501	G	A	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	4419484	4419485	chr5:4419485:G:A	rs77029012	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	4533386	4533387	chr5:4533387:G:T	rs7733851	G	T	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	4661421	4661422	chr5:4661422:G:A	rs115691886	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	4662209	4662210	chr5:4662210:G:A	rs7447371	G	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	4980302	4980303	chr5:4980303:T:A	rs78910941	T	A	T	Sox1.mouse_HMG_2	9	1	-	7.17383219352623	0.26507741421100944	TTAACTTCCATTCAG
chr5	5122890	5122891	chr5:5122891:A:G	rs10036983	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	5196330	5196331	chr5:5196331:A:C	rs7720531	A	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	5221186	5221187	chr5:5221187:A:G	rs1560062	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr5	5297853	5297854	chr5:5297854:T:C	rs6859677	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	5318770	5318771	chr5:5318771:C:T	rs111859044	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	5357545	5357546	chr5:5357546:C:T	rs78232271	C	T	c	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	5365245	5365246	chr5:5365246:G:A	rs770525303	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	5420521	5420522	chr5:5420522:C:T	rs1366117	C	T	T	Sox1.mouse_HMG_2	2	1	-	4.121712304741833	-0.5236902282743853	GTGAAAGTCATTCTT
chr5	5699325	5699326	chr5:5699326:T:A	rs142670637	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	5823419	5823420	chr5:5823420:G:A	rs11134125	G	A	G	Sox1.mouse_HMG_2	1	1	-	4.1083290845753	8.752321392068534	CCGAATTACAGTCTA
chr5	5883506	5883507	chr5:5883507:G:A	rs12516481	G	A	.	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr5	5979007	5979008	chr5:5979008:C:G	rs16876708	C	G	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr5	6038067	6038068	chr5:6038068:T:C	rs1021416	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr5	6038099	6038100	chr5:6038100:A:G	rs35128	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	6112605	6112606	chr5:6112606:T:C	rs6898659	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr5	6370116	6370117	chr5:6370117:T:C	rs271396	T	C	t	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	6530227	6530228	chr5:6530228:C:T	rs62330592	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	6553039	6553040	chr5:6553040:C:T	rs564972	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	6995239	6995240	chr5:6995240:C:T	rs76230695	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	7168312	7168313	chr5:7168313:A:G	rs556672544	A	G	A	Sox1.mouse_HMG_2	9	1	+	9.465050569991401	2.5562957906761814	ATGAATAACATACAG
chr5	7432549	7432550	chr5:7432550:T:C	rs7737816	T	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	8151388	8151389	chr5:8151389:T:C	rs10045169	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	8292070	8292071	chr5:8292071:C:A	rs13184953	C	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	8842876	8842877	chr5:8842877:T:C	rs143560746	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	8919665	8919666	chr5:8919666:A:G	rs12519046	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	8984615	8984616	chr5:8984616:A:G	rs4612031	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	9131889	9131890	chr5:9131890:A:G	rs17238371	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	9152475	9152476	chr5:9152476:A:G	rs10055926	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	9205436	9205437	chr5:9205437:C:A	rs1806069	C	A	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr5	9213087	9213088	chr5:9213088:G:A	rs40676	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	9359334	9359335	chr5:9359335:A:T	rs16882525	A	T	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	9440685	9440686	chr5:9440686:A:G	rs117543215	A	G	A	Sox1.mouse_HMG_2	10	1	+	4.674840663989968	8.77018472654515	TTGAATACCAATTAT
chr5	9551834	9551835	chr5:9551835:A:T	rs182195632	A	T	A	Sox1.mouse_HMG_2	5	1	-	4.15701908095316	-2.7517356983620607	AGGAATCACATTCTC
chr5	9963181	9963182	chr5:9963182:T:C	rs7734975	T	C	T	Sox1.mouse_HMG_2	4	1	-	7.558484208863582	0.7370714397035079	CTGAATTCCCTTCAG
chr5	10070647	10070648	chr5:10070648:C:T	rs1876153	C	T	T	Sox1.mouse_HMG_2	6	1	-	3.5543198156630065	4.994497237531645	CTAAGTGCCATTCAT
chr5	10123244	10123245	chr5:10123245:T:C	rs77644055	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	10355409	10355410	chr5:10355410:A:G	rs190712739	A	G	A	Sox1.mouse_HMG_2	14	1	+	3.815411579861827	3.980052827756775	ACGTATTACATTCAA
chr5	10481612	10481613	chr5:10481613:G:A	rs2962330	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr5	10548503	10548504	chr5:10548504:A:T	rs12515831	A	T	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	10577782	10577783	chr5:10577783:C:T	rs2962321	C	T	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	10675196	10675197	chr5:10675197:C:A	rs4702721	C	A	C	Sox1.mouse_HMG_2	7	1	+	5.817500638366249	6.214185359034318	CTGACTGCCAGTCTC
chr5	10683806	10683807	chr5:10683807:G:A	rs5745288	G	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	10690636	10690637	chr5:10690637:T:G	rs5745271	T	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	10722891	10722892	chr5:10722892:G:A	rs267975	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	10759401	10759402	chr5:10759402:G:A	rs12332143	G	A	A	Sox1.mouse_HMG_2	13	1	-	5.599820663287586	8.726173119258641	CTGACTTCCATTCCA
chr5	10789167	10789168	chr5:10789168:G:A	rs13159508	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	10789181	10789182	chr5:10789182:C:T	rs116603609	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	10854493	10854494	chr5:10854494:T:C	rs11742561	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.334238984149464	3.3300027515142614	ATGATTTTCATTTAT
chr5	10984601	10984602	chr5:10984602:C:T	rs2062688	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	10984618	10984619	chr5:10984619:T:C	rs76717633	T	C	T	Sox1.mouse_HMG_2	6	1	+	3.5610375999283983	0.04962803198142632	CTGAATTACCTTTAC
chr5	11385996	11385997	chr5:11385997:T:C	rs568985038	T	C	t	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	11386014	11386015	chr5:11386015:C:T	rs258829	C	T	t	Sox1.mouse_HMG_2	0	1	+	2.29165030802869	2.0257071142592573	CTGAAAGCCATTCGC
chr5	11786271	11786272	chr5:11786272:A:C	rs28602675	A	C	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	11956744	11956745	chr5:11956745:C:T	rs55685445	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	12623389	12623390	chr5:12623390:T:C	rs11748964	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	12833788	12833789	chr5:12833789:T:G	rs4631175	T	G	t	Sox1.mouse_HMG_2	9	1	-	3.914498934938228	-2.9942558443769918	ATGAACAGAATTCAG
chr5	12865547	12865548	chr5:12865548:G:A	rs4557406	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.228037249837076	4.929092069378151	GTTACTGGCATTCAC
chr5	13351060	13351061	chr5:13351061:G:C	rs13168766	G	C	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	13568016	13568017	chr5:13568017:C:T	rs59364960	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	13988226	13988227	chr5:13988227:T:C	rs57632565	T	C	T	Sox1.mouse_HMG_2	3	1	-	5.220462954699662	-1.6882918246155603	ACGATTTACATTCAT
chr5	14164150	14164151	chr5:14164151:A:G	rs32595	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	14171998	14171999	chr5:14171999:A:G	rs32573	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.258508601821776	-2.6502461774934436	AAGAATTACATACAC
chr5	14172010	14172011	chr5:14172011:A:G	rs32572	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	14306667	14306668	chr5:14306668:A:C	rs73059509	A	C	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	14341159	14341160	chr5:14341160:T:G	rs139023965	T	G	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	14471556	14471557	chr5:14471557:T:A	rs27091	T	A	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	14550995	14550996	chr5:14550996:A:G	rs112900742	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr5	14551002	14551003	chr5:14551003:A:G	rs26214	A	G	G	Sox1.mouse_HMG_2	10	1	-	4.338206330897285	-2.5097352473829964	CTGAAATGCATTCTC
chr5	14666272	14666273	chr5:14666273:A:G	rs77409750	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.342348403083008	3.3381121704478067	ATGATTCTCATTCAG
chr5	14942473	14942474	chr5:14942474:G:T	chr5:14942474:G:T	G	T	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	15169156	15169157	chr5:15169157:T:C	rs4566789	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	15169157	15169158	chr5:15169158:G:T	rs4282310	G	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	15322116	15322117	chr5:15322117:A:T	rs1447277	A	T	.	Sox1.mouse_HMG_2	3	1	+	4.376633236000859	-2.5321215433143625	TTGAATTCCATACTC
chr5	15363203	15363204	chr5:15363204:G:A	rs16903856	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr5	15416367	15416368	chr5:15416368:A:G	rs10475063	A	G	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	15533430	15533431	chr5:15533431:A:G	rs572051	A	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	16373932	16373933	chr5:16373933:C:T	rs29965	C	T	T	Sox1.mouse_HMG_2	0	1	-	4.077512398219916	5.081748630855118	GTGATTCCCATTCAC
chr5	16468054	16468055	chr5:16468055:G:A	rs58042035	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	16505890	16505891	chr5:16505891:G:A	rs13188528	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	16596754	16596755	chr5:16596755:C:T	rs115951847	C	T	c	Sox1.mouse_HMG_2	14	1	+	2.014757683347626	2.889370026070362	GGGAATGCCACTCAC
chr5	16656460	16656461	chr5:16656461:A:G	rs588367	A	G	G	Sox1.mouse_HMG_2	13	1	-	5.143586328941068	2.017233872970013	CTGATTTTCATTCTT
chr5	16741116	16741117	chr5:16741117:G:C	rs25894	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	16853783	16853784	chr5:16853784:C:A	rs77415427	C	A	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	16881238	16881239	chr5:16881239:C:G	rs4702179	C	G	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	17213097	17213098	chr5:17213098:C:G	rs2929709	C	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	17365428	17365429	chr5:17365429:C:T	rs9312951	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	17400097	17400098	chr5:17400098:T:A	rs2459815	T	A	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	17400101	17400102	chr5:17400102:C:T	rs2459816	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	17402640	17402641	chr5:17402641:C:T	rs568577906	C	T	c	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	17452906	17452907	chr5:17452907:G:A	rs2459826	G	A	A	Sox1.mouse_HMG_2	4	1	-	5.011781893101713	0.5724301918085605	CTGACTTCCATCCAA
chr5	17680646	17680647	chr5:17680647:T:A	rs6450584	T	A	T	Sox1.mouse_HMG_2	9	1	-	4.506922630296433	-2.4018321490187877	TTTAATTACATTCTG
chr5	17793187	17793188	chr5:17793188:G:A	rs9292838	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr5	18069913	18069914	chr5:18069914:G:T	rs600146	G	T	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	18153462	18153463	chr5:18153463:A:C	rs12153673	A	C	A	Sox1.mouse_HMG_2	0	1	-	3.6372330082287494	3.5678161750813384	TTGCATTTCATTCTG
chr5	18268419	18268420	chr5:18268420:A:G	rs56315237	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	18488220	18488221	chr5:18488221:A:G	rs75485994	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr5	18698921	18698922	chr5:18698922:A:G	rs28375793	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr5	19534695	19534696	chr5:19534696:T:C	rs995491	T	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	19687425	19687426	chr5:19687426:T:C	rs559184814	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	19929178	19929179	chr5:19929179:C:T	rs1911845	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	19929200	19929201	chr5:19929201:A:G	rs149606401	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	20028688	20028689	chr5:20028689:T:C	rs4292450	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	20166878	20166879	chr5:20166879:C:T	rs2388129	C	T	C	Sox1.mouse_HMG_2	7	1	+	4.269183626401456	3.808239172694347	ATGAATGCCCTTCTA
chr5	20166903	20166904	chr5:20166904:A:T	rs2892440	A	T	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	20833108	20833109	chr5:20833109:A:G	rs7443039	A	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	21016994	21016995	chr5:21016995:G:C	rs17239328	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	21574721	21574722	chr5:21574722:T:C	rs565879911	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	21906531	21906532	chr5:21906532:T:C	rs7379403	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	22166394	22166395	chr5:22166395:A:G	rs4701274	A	G	A	Sox1.mouse_HMG_2	14	1	+	6.971195551145614	7.135836799040562	TTGAATAGAAGTCAA
chr5	22560175	22560176	chr5:22560176:A:C	rs115200211	A	C	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	22596603	22596604	chr5:22596604:A:G	rs17354991	A	G	A	Sox1.mouse_HMG_2	14	1	-	8.797369297197188	7.922756954474452	TTAAATACCAGTCAT
chr5	22664320	22664321	chr5:22664321:A:G	rs6882492	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	23589409	23589410	chr5:23589410:C:A	rs1080851	C	A	C	Sox1.mouse_HMG_2	2	1	-	6.5982362108305885	-0.29845812079212297	ATGACTTTCAATCAT
chr5	24154951	24154952	chr5:24154952:A:G	rs2115122	A	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	24154982	24154983	chr5:24154983:C:A	rs13361951	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	24644816	24644817	chr5:24644817:T:A	rs72752047	T	A	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	25091171	25091172	chr5:25091172:T:A	rs17404216	T	A	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	25570428	25570429	chr5:25570429:G:T	rs79421956	G	T	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr5	25573738	25573739	chr5:25573739:G:A	rs10068429	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	25573745	25573746	chr5:25573746:A:G	rs10061502	A	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	25680282	25680283	chr5:25680283:A:G	rs954478	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	25735203	25735204	chr5:25735204:G:A	rs30851	G	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	25963753	25963754	chr5:25963754:G:A	rs72750923	G	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	26182328	26182329	chr5:26182329:G:C	rs75680318	G	C	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	27140943	27140944	chr5:27140944:C:T	rs72737296	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	27447755	27447756	chr5:27447756:A:G	rs4421076	A	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	28397625	28397626	chr5:28397626:A:T	rs4443428	A	T	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	28397664	28397665	chr5:28397665:C:T	rs4282327	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	28519196	28519197	chr5:28519197:T:C	rs116015288	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	28821012	28821013	chr5:28821013:T:C	rs1910074	T	C	C	Sox1.mouse_HMG_2	6	1	+	7.979741957519729	4.4683323895727565	TTTAATTACATTCAC
chr5	29005648	29005649	chr5:29005649:A:G	rs4867163	A	G	a	Sox1.mouse_HMG_2	14	1	-	7.895352249806217	7.020739907083481	CTGATTGGCATTCAT
chr5	29258633	29258634	chr5:29258634:A:G	rs5023619	A	G	A	Sox1.mouse_HMG_2	0	1	-	5.355576062075463	5.621519255844896	TTGAATACAATTTAA
chr5	29779040	29779041	chr5:29779041:G:A	rs1379072	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	29786830	29786831	chr5:29786831:T:C	rs62348709	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	29795437	29795438	chr5:29795438:T:C	rs16899416	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr5	30105470	30105471	chr5:30105471:A:G	rs12186990	A	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	30108328	30108329	chr5:30108329:A:C	rs9292367	A	C	C	Sox1.mouse_HMG_2	13	1	+	5.768621871267041	-0.5520941378623058	ATGAATAAAATGCAT
chr5	30242486	30242487	chr5:30242487:G:A	rs4295402	G	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	30960314	30960315	chr5:30960315:T:C	rs67018436	T	C	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	31013765	31013766	chr5:31013766:G:A	rs62358280	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr5	31235597	31235598	chr5:31235598:T:C	rs142523129	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	31854385	31854386	chr5:31854386:T:C	rs1008733934	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	31854390	31854391	chr5:31854391:C:T	rs6864968	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	31854397	31854398	chr5:31854398:C:T	rs143547761	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr5	32004283	32004284	chr5:32004284:G:C	rs994043784	G	C	G	Sox1.mouse_HMG_2	7	1	-	8.690005865362485	8.38563576648948	CTTAATACCATTCAC
chr5	32004294	32004295	chr5:32004295:C:A	rs74480011	C	A	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	32263748	32263749	chr5:32263749:T:C	rs34050693	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr5	32455959	32455960	chr5:32455960:A:G	rs57818346	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.2188690338112345	-2.6898857455039855	ATGCATACAATTCAG
chr5	32503219	32503220	chr5:32503220:A:G	rs664889	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	32523654	32523655	chr5:32523655:C:T	rs113479426	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	32533240	32533241	chr5:32533241:G:A	rs818541	G	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	32683332	32683333	chr5:32683333:C:T	rs17539669	C	T	C	Sox1.mouse_HMG_2	9	1	-	4.259732293935151	11.168487073250374	AAGAATACCGTTCAA
chr5	33011234	33011235	chr5:33011235:A:G	rs1508821	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	33118758	33118759	chr5:33118759:G:C	rs186998069	G	C	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr5	33272450	33272451	chr5:33272451:T:C	rs148175654	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	33291404	33291405	chr5:33291405:G:A	rs114014888	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	33316691	33316692	chr5:33316692:T:C	rs73087149	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	33337035	33337036	chr5:33337036:A:C	rs145960036	A	C	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	33338561	33338562	chr5:33338562:T:C	rs10040888	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.160488185628668	-2.748266593686553	CAGAATAACATTGAG
chr5	33585925	33585926	chr5:33585926:T:C	rs409592	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	33610423	33610424	chr5:33610424:A:G	rs7729905	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	33808496	33808497	chr5:33808497:C:T	rs1445913	C	T	T	Sox1.mouse_HMG_2	12	1	+	2.976872627936286	-1.6957144757319695	ATGAATTGCATACGG
chr5	34329313	34329314	chr5:34329314:A:C	rs11747776	A	C	-	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	34686337	34686338	chr5:34686338:A:G	rs111476017	A	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	34794112	34794113	chr5:34794113:G:C	rs336459	G	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	34806330	34806331	chr5:34806331:A:C	rs71615831	A	C	A	Sox1.mouse_HMG_2	1	1	-	5.005751552088888	0.0572880655170801	ATGAACTGCAGTCAA
chr5	34841473	34841474	chr5:34841474:A:G	rs62355748	A	G	G	Sox1.mouse_HMG_2	10	1	-	6.002767366531294	-0.8451742117489872	TTAAATACCATTTAC
chr5	34865422	34865423	chr5:34865423:A:G	rs13167483	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	34976586	34976587	chr5:34976587:T:A	rs573175106	T	A	T	Sox1.mouse_HMG_2	10	1	+	2.9274716523903623	-3.9204699258899196	CTGAATAGCATCCCT
chr5	35003389	35003390	chr5:35003390:C:G	rs949034692	C	G	C	Sox1.mouse_HMG_2	14	1	+	2.8885775765623434	2.610121802497341	CAGAATTGCTTTCAC
chr5	35185332	35185333	chr5:35185333:T:C	rs12188108	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr5	35202829	35202830	chr5:35202830:T:A	rs73078878	T	A	T	Sox1.mouse_HMG_2	9	1	-	11.37158929261839	4.4628345133031715	CTAAATTACATTCAT
chr5	35210219	35210220	chr5:35210220:C:T	rs34024951	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	35385507	35385508	chr5:35385508:A:G	rs7734554	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	35452966	35452967	chr5:35452967:A:T	rs73747457	A	T	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr5	35469689	35469690	chr5:35469690:T:C	rs146673086	T	C	T	Sox1.mouse_HMG_2	14	1	+	3.920135067825773	3.0455227251030372	AGGATTGCCATTCAT
chr5	35647712	35647713	chr5:35647713:T:C	rs4703367	T	C	C	Sox1.mouse_HMG_2	13	1	-	3.528422958797619	-1.4176947289750292	AGGAATGGCATACAT
chr5	35709081	35709082	chr5:35709082:G:C	rs13170390	G	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	35909001	35909002	chr5:35909002:C:T	chr5:35909002:C:T	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	35909023	35909024	chr5:35909024:G:A	rs73094022	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr5	36507652	36507653	chr5:36507653:G:A	rs13356449	G	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	36730901	36730902	chr5:36730902:A:G	rs245674	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	36769473	36769474	chr5:36769474:G:A	rs1466861	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr5	37792948	37792949	chr5:37792949:T:A	rs543309724	T	A	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	37792949	37792950	chr5:37792950:C:T	rs561321997	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	37816385	37816386	chr5:37816386:C:T	rs72745196	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr5	38448760	38448761	chr5:38448761:C:T	rs11743442	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	38640085	38640086	chr5:38640086:G:A	rs327284	G	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	38744097	38744098	chr5:38744098:C:T	rs10512691	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	39077768	39077769	chr5:39077769:T:A	rs13178502	T	A	a	Sox1.mouse_HMG_2	5	1	+	4.5252642256757944	-2.3834905536394246	ATGACTAACAGTTTT
chr5	39232442	39232443	chr5:39232443:G:A	rs74697430	G	A	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	39258289	39258290	chr5:39258290:G:A	rs113741668	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	39355545	39355546	chr5:39355546:G:A	rs1421095	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	39463094	39463095	chr5:39463095:G:A	rs17335879	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	39606826	39606827	chr5:39606827:C:T	rs72741790	C	T	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	40221078	40221079	chr5:40221079:A:C	rs148909977	A	C	A	Sox1.mouse_HMG_2	9	1	+	5.19186815852464	-1.7168866207905813	ATGAGTTACATTTAT
chr5	40221083	40221084	chr5:40221084:T:C	rs12521583	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.19186815852464	4.317255815801904	ATGAGTTACATTTAT
chr5	40223997	40223998	chr5:40223998:C:G	rs180844636	C	G	C	Sox1.mouse_HMG_2	8	1	+	8.725103409780026	3.0065687472443163	TTGAATAACATTTTT
chr5	40268273	40268274	chr5:40268274:T:C	rs1445010	T	C	t	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	40280762	40280763	chr5:40280763:G:T	rs182161404	G	T	g	Sox1.mouse_HMG_2	12	1	-	7.196644965335686	0.2961963148693224	CTGAAAAACAGTCAT
chr5	40446773	40446774	chr5:40446774:T:C	rs67224409	T	C	C	Sox1.mouse_HMG_2	6	1	+	4.246896973994316	0.7354874060473434	ATGAAATTCATTTAT
chr5	40495277	40495278	chr5:40495278:G:C	rs4957310	G	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr5	40608057	40608058	chr5:40608058:A:G	rs16870171	A	G	A	Sox1.mouse_HMG_2	4	1	-	3.352289403921401	7.791641105214551	GTGATTGCCATTCTA
chr5	40670717	40670718	chr5:40670718:A:G	rs4599576	A	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	40909694	40909695	chr5:40909695:C:T	rs138172295	C	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr5	41186269	41186270	chr5:41186270:A:C	rs77298425	A	C	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	41246747	41246748	chr5:41246748:A:G	rs56176580	A	G	A	Sox1.mouse_HMG_2	5	1	-	5.21069450478409	-1.6980602745311306	AGGAATTGCATTTAG
chr5	41264225	41264226	chr5:41264226:G:A	rs392077	G	A	G	Sox1.mouse_HMG_2	7	1	+	3.955362195062147	4.656417014603222	AAGAACAGCATTCAA
chr5	41345246	41345247	chr5:41345247:T:G	rs2197422	T	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	42119958	42119959	chr5:42119959:C:A	rs9292840	C	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr5	42555828	42555829	chr5:42555829:G:A	rs7703713	G	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	42591401	42591402	chr5:42591402:T:A	rs34556930	T	A	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	42686833	42686834	chr5:42686834:C:T	rs4315928	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr5	42800705	42800706	chr5:42800706:C:T	rs7579	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	42855460	42855461	chr5:42855461:C:G	rs148692136	C	G	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	42879470	42879471	chr5:42879471:T:A	rs309937	T	A	T	Sox1.mouse_HMG_2	3	1	-	4.3969993742371685	-2.5117554050780524	TTGATTAGCATTTAT
chr5	42887135	42887136	chr5:42887136:G:A	rs34086275	G	A	G	Sox1.mouse_HMG_2	9	1	-	6.726175978452468	6.726175978452468	CTGACTTACCTTCAT
chr5	42887319	42887320	chr5:42887320:T:A	rs114314981	T	A	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	42887334	42887335	chr5:42887335:C:T	rs7718081	C	T	C	Sox1.mouse_HMG_2	10	1	-	2.820510345939632	-1.2748337166155514	CTGACTTACCGTCAG
chr5	42887336	42887337	chr5:42887337:G:C	rs315263	G	C	C	Sox1.mouse_HMG_2	8	1	-	2.820510345939632	-2.8980243165960755	CTGACTTACCGTCAG
chr5	42887352	42887353	chr5:42887353:A:C	rs1173048144	A	C	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	42887362	42887363	chr5:42887363:C:T	rs7718188	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	43041054	43041055	chr5:43041055:C:G	rs114014390	C	G	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	43065658	43065659	chr5:43065659:A:T	rs142904593	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	43258425	43258426	chr5:43258426:A:G	rs10462048	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	44929053	44929054	chr5:44929054:T:C	rs4323241	T	C	C	Sox1.mouse_HMG_2	0	1	+	7.055063596838475	7.321006790607908	TAGAATTTCATTCTT
chr5	44939190	44939191	chr5:44939191:G:A	rs12517690	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr5	45456974	45456975	chr5:45456975:T:C	rs13354798	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	50404059	50404060	chr5:50404060:G:C	rs13182357	G	C	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	50647791	50647792	chr5:50647792:A:G	rs62366907	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	50922951	50922952	chr5:50922952:T:C	rs1029176745	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	51396766	51396767	chr5:51396767:T:A	rs79435602	T	A	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	51471680	51471681	chr5:51471681:A:G	rs57848528	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	51703227	51703228	chr5:51703228:C:A	rs61150701	C	A	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr5	52469326	52469327	chr5:52469327:G:A	rs556422089	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	52492105	52492106	chr5:52492106:A:G	rs10940253	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	52607294	52607295	chr5:52607295:T:A	rs350417	T	A	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	52724790	52724791	chr5:52724791:T:C	rs658771	T	C	T	Sox1.mouse_HMG_2	11	1	+	7.595118269920179	0.6863634906049582	GTGAACAGCATTCAA
chr5	52822623	52822624	chr5:52822624:C:A	rs762660518	C	A	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr5	52857111	52857112	chr5:52857112:C:T	rs6894627	C	T	T	Sox1.mouse_HMG_2	2	1	-	3.914498934938228	-0.7309035980779872	ATGAATAGAATGCAG
chr5	52868435	52868436	chr5:52868436:T:C	rs10071708	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	52934939	52934940	chr5:52934940:T:C	rs16880533	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	52985468	52985469	chr5:52985469:C:A	rs1365611546	C	A	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	52985499	52985500	chr5:52985500:A:G	rs116426727	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	53009165	53009166	chr5:53009166:A:G	rs153141	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	53028090	53028091	chr5:53028091:G:A	rs897908196	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	53935373	53935374	chr5:53935374:G:A	rs76021976	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	54290002	54290003	chr5:54290003:G:A	rs6891928	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	54558457	54558458	chr5:54558458:C:A	rs7711608	C	A	c	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	54558881	54558882	chr5:54558882:T:C	rs10079383	T	C	c	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	54632125	54632126	chr5:54632126:G:A	rs72754096	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	54695737	54695738	chr5:54695738:A:C	rs1373990	A	C	C	Sox1.mouse_HMG_2	13	1	+	5.376287999947063	-0.9444280091822835	ATGACTTGCCTTCAA
chr5	54703938	54703939	chr5:54703939:G:A	rs4865585	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	54837192	54837193	chr5:54837193:G:A	rs760359472	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.18499089238303	-0.45943579799895795	TTGACTCACATTTAT
chr5	54998469	54998470	chr5:54998470:G:A	rs879769	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	55031088	55031089	chr5:55031089:C:G	chr5:55031089:C:G	C	G	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr5	55351771	55351772	chr5:55351772:A:G	rs10071980	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	55598404	55598405	chr5:55598405:T:C	rs1540385	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	55692753	55692754	chr5:55692754:A:G	rs2408204	A	G	G	Sox1.mouse_HMG_2	9	1	+	9.956375293540015	3.0476205142247945	ATGACTTACATTCTG
chr5	55764796	55764797	chr5:55764797:G:A	rs13183395	G	A	G	Sox1.mouse_HMG_2	11	1	-	3.31267918679585	10.22143396611107	ATGAATACCTTCCAT
chr5	55764827	55764828	chr5:55764828:G:A	rs7730742	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr5	55857124	55857125	chr5:55857125:A:G	rs1423577	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	56059117	56059118	chr5:56059118:A:T	rs17348877	A	T	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr5	56100920	56100921	chr5:56100921:G:A	rs181616836	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	56279730	56279731	chr5:56279731:A:C	rs152318	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	56284948	56284949	chr5:56284949:G:A	rs150364	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	56350124	56350125	chr5:56350125:G:C	rs289783	G	C	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	56415766	56415767	chr5:56415767:A:C	chr5:56415767:A:C	A	C	A	Sox1.mouse_HMG_2	11	1	-	5.007688680885528	-1.9010660984296925	TTGAATTGCAATCTT
chr5	56534308	56534309	chr5:56534309:G:A	rs180796683	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	56634752	56634753	chr5:56634753:A:G	rs1279627	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	56711511	56711512	chr5:56711512:G:A	rs7709971	G	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	56840740	56840741	chr5:56840741:T:C	rs10471993	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr5	56990109	56990110	chr5:56990110:T:C	rs77231998	T	C	T	Sox1.mouse_HMG_2	11	1	+	5.216307686215497	-1.6924470930997226	TTGAACACCAGTCAA
chr5	57082654	57082655	chr5:57082655:A:G	rs331044	A	G	A	Sox1.mouse_HMG_2	3	1	+	3.818131775873407	-3.090623003441815	GTAATTTCCATTCAT
chr5	57175023	57175024	chr5:57175024:G:A	rs147028950	G	A	G	Sox1.mouse_HMG_2	4	1	+	3.374849025979153	10.196261795139227	CTGAGTTACATTCGC
chr5	57409241	57409242	chr5:57409242:T:C	rs992079	T	C	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	57449005	57449006	chr5:57449006:C:G	rs10036435	C	G	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	57503730	57503731	chr5:57503731:C:A	rs546137131	C	A	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	57650747	57650748	chr5:57650748:C:T	rs77960486	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	57687645	57687646	chr5:57687646:C:A	rs229959	C	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr5	57703865	57703866	chr5:57703866:A:G	rs2017201	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	57818381	57818382	chr5:57818382:G:A	rs7723284	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr5	58013203	58013204	chr5:58013204:C:G	rs1454916	C	G	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	58013244	58013245	chr5:58013245:C:T	rs11749915	C	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr5	58022399	58022400	chr5:58022400:G:A	rs78553769	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	58370426	58370427	chr5:58370427:A:T	rs154681	A	T	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	58370454	58370455	chr5:58370455:A:G	rs10513143	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	58475259	58475260	chr5:58475260:A:G	rs6450476	A	G	G	Sox1.mouse_HMG_2	1	1	-	3.7703970023631213	-0.8735953051301119	ATGACCACCATTCTC
chr5	58475275	58475276	chr5:58475276:A:G	rs4699927	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	58502181	58502182	chr5:58502182:C:A	rs76221450	C	A	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	58619426	58619427	chr5:58619427:G:C	rs10055649	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	58891726	58891727	chr5:58891727:T:G	rs7720004	T	G	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	58891755	58891756	chr5:58891756:G:C	rs469611	G	C	C	Sox1.mouse_HMG_2	14	1	+	3.6980462092636888	3.976501983328691	TTGAATTTCACTCTG
chr5	59020168	59020169	chr5:59020169:A:G	rs72764055	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.221134651785654	-1.6002781173744176	AAAAATTTCATTCAA
chr5	59072502	59072503	chr5:59072503:C:T	rs55868449	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	59337334	59337335	chr5:59337335:A:C	rs114161505	A	C	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	59357849	59357850	chr5:59357850:T:A	rs115754550	T	A	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr5	59360425	59360426	chr5:59360426:T:C	rs35283	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	59647947	59647948	chr5:59647948:T:C	rs298022	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr5	59666820	59666821	chr5:59666821:T:C	rs184494277	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	59769205	59769206	chr5:59769206:C:T	rs77448214	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	59791661	59791662	chr5:59791662:C:T	rs75724778	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	60309147	60309148	chr5:60309148:T:A	rs16877890	T	A	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr5	60471096	60471097	chr5:60471097:G:A	rs7700547	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	60487749	60487750	chr5:60487750:A:G	rs79563697	A	G	A	Sox1.mouse_HMG_2	1	1	-	9.104151582998215	4.460159275504979	ATGAATCACAGTCAA
chr5	60493372	60493373	chr5:60493373:T:C	rs75467925	T	C	T	Sox1.mouse_HMG_2	13	1	-	6.627831015644581	1.6817133278719325	ATGAATTCCAGACAT
chr5	60521568	60521569	chr5:60521569:T:G	rs3846460	T	G	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	60812843	60812844	chr5:60812844:G:C	rs10062465	G	C	.	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	61123549	61123550	chr5:61123550:T:C	rs13190305	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	61261416	61261417	chr5:61261417:C:T	rs12523409	C	T	C	Sox1.mouse_HMG_2	12	1	+	11.38200988954303	6.709422785874774	TTGAATCTCATTCAT
chr5	61527169	61527170	chr5:61527170:C:T	rs13179091	C	T	T	Sox1.mouse_HMG_2	14	1	+	7.96768150982722	8.842293852549956	TTGAATTACATGCAC
chr5	61559242	61559243	chr5:61559243:T:C	rs1445978	T	C	C	Sox1.mouse_HMG_2	9	1	-	2.8964817243465233	-4.012273054968698	GTGCATACCATTCCT
chr5	61663663	61663664	chr5:61663664:G:A	rs40148	G	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	61683402	61683403	chr5:61683403:T:C	rs4700426	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr5	61732747	61732748	chr5:61732748:C:G	rs1880851	C	G	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	61771088	61771089	chr5:61771089:C:T	rs990728	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	62089078	62089079	chr5:62089079:A:C	rs969752	A	C	C	Sox1.mouse_HMG_2	3	1	+	5.750689099488145	-1.1580656798270756	GTGAATTTCAGTCCT
chr5	62208561	62208562	chr5:62208562:G:A	rs7710751	G	A	g	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr5	62778682	62778683	chr5:62778683:A:G	rs16891072	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.919221344343687	-1.989533434971532	CTAACTTACAGTCAA
chr5	62785706	62785707	chr5:62785707:A:G	rs2642735	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	62792317	62792318	chr5:62792318:T:C	rs4700519	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	62887157	62887158	chr5:62887158:T:C	rs2222395	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	63155157	63155158	chr5:63155158:T:C	rs13169796	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr5	63916967	63916968	chr5:63916968:T:G	rs77739313	T	G	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	64145312	64145313	chr5:64145313:T:C	rs12520115	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.081486111692826	-1.8272686676223953	ATGACAGCCATTCAA
chr5	64180802	64180803	chr5:64180803:T:C	chr5:64180803:T:C	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	64569769	64569770	chr5:64569770:C:G	rs1158418	C	G	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	64970909	64970910	chr5:64970910:G:A	rs10077685	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	65121978	65121979	chr5:65121979:G:A	rs7710076	G	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	65190520	65190521	chr5:65190521:A:G	rs544467222	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	65329684	65329685	chr5:65329685:C:T	rs2307121	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.235573400496045	-1.4088532898859412	TTGAACTGCAGTCAG
chr5	65612057	65612058	chr5:65612058:G:C	rs37332	G	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	65862880	65862881	chr5:65862881:T:C	rs17185365	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	66209335	66209336	chr5:66209336:C:T	rs554262082	C	T	-	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr5	66277251	66277252	chr5:66277252:C:G	rs10461513	C	G	G	Sox1.mouse_HMG_2	14	1	-	4.342674551061361	4.621130325126363	AAGAATGACAGTCTG
chr5	66297069	66297070	chr5:66297070:T:A	rs182304920	T	A	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	66659790	66659791	chr5:66659791:G:T	rs35942170	G	T	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	66887300	66887301	chr5:66887301:C:G	rs190474	C	G	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	66896142	66896143	chr5:66896143:A:G	rs460799	A	G	G	Sox1.mouse_HMG_2	5	1	-	3.674028360976597	-3.2347264183386244	TTGACTAACTGTCAC
chr5	66903672	66903673	chr5:66903673:C:T	rs456775	C	T	T	Sox1.mouse_HMG_2	12	1	+	4.280895774802138	-0.3916913288661171	GATAATAGCATTCAT
chr5	66959497	66959498	chr5:66959498:A:G	rs2280174	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	66988468	66988469	chr5:66988469:A:G	rs1703249	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	67022367	67022368	chr5:67022368:A:G	rs11956654	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	67268331	67268332	chr5:67268332:C:T	rs77000101	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	67636409	67636410	chr5:67636410:C:G	rs3934546	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr5	67771389	67771390	chr5:67771390:G:T	rs4370229	G	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	67772089	67772090	chr5:67772090:C:T	rs35966620	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	67809565	67809566	chr5:67809566:A:G	rs16897030	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	67817818	67817819	chr5:67817819:C:T	rs73114638	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	68028049	68028050	chr5:68028050:A:T	rs467093	A	T	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	68170948	68170949	chr5:68170949:C:A	rs116637346	C	A	C	Sox1.mouse_HMG_2	0	1	+	4.593777546206118	5.262653751924477	CTCAATAAGATTCAG
chr5	68214919	68214920	chr5:68214920:C:A	chr5:68214920:C:A	C	A	c	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	68214919	68214920	chr5:68214920:C:G	rs866194809	C	G	c	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	68528862	68528863	chr5:68528863:C:T	rs56194430	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr5	68684215	68684216	chr5:68684216:C:T	rs1319561	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.27889692801013	-2.3655297623718563	AGGAATTCCATACAG
chr5	68894623	68894624	chr5:68894624:C:A	rs6891704	C	A	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	68894626	68894627	chr5:68894627:C:G	rs6891706	C	G	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	69235865	69235866	chr5:69235866:G:A	rs2930949	G	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	71632423	71632424	chr5:71632424:T:C	rs277982	T	C	T	Sox1.mouse_HMG_2	14	1	+	7.30123821942443	6.426625876701694	TTGACAAACATTCAT
chr5	72077175	72077176	chr5:72077176:T:G	rs922071	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	72134720	72134721	chr5:72134721:T:C	rs753762097	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	72269563	72269564	chr5:72269564:G:C	rs62364774	G	C	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr5	72518221	72518222	chr5:72518222:T:G	chr5:72518222:T:G	T	G	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	72602127	72602128	chr5:72602128:C:T	rs33426	C	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	72651319	72651320	chr5:72651320:C:A	rs114529015	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	72651321	72651322	chr5:72651322:C:T	rs889237	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr5	72711878	72711879	chr5:72711879:T:C	rs3010242	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	72785942	72785943	chr5:72785943:T:C	rs6875670	T	C	t	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	73254565	73254566	chr5:73254566:C:T	rs7715700	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	73394632	73394633	chr5:73394633:T:C	rs4398617	T	C	t	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	73442067	73442068	chr5:73442068:A:G	rs874973	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	73615250	73615251	chr5:73615251:T:G	rs2544648	T	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	73781523	73781524	chr5:73781524:A:G	rs4413512	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	73963237	73963238	chr5:73963238:G:A	rs145856091	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	74063708	74063709	chr5:74063709:C:T	rs13173269	C	T	T	Sox1.mouse_HMG_2	7	1	+	4.379994219049556	3.91904976534245	GGGAATACTATTCAG
chr5	74100592	74100593	chr5:74100593:G:A	rs1159846	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	74164927	74164928	chr5:74164928:G:A	rs73107742	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	74310200	74310201	chr5:74310201:A:G	rs292199	A	G	a	Sox1.mouse_HMG_2	13	1	+	9.552557760392714	4.606440072620067	CTGAATACCTTTCAT
chr5	74415720	74415721	chr5:74415721:C:T	rs467147	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	74442779	74442780	chr5:74442780:A:G	rs456797	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	74462193	74462194	chr5:74462194:A:C	rs73762780	A	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	74492148	74492149	chr5:74492149:C:G	rs185498199	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	74562308	74562309	chr5:74562309:G:A	rs74929071	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.590962887297795	-1.053463803084191	GTGAATGCCATTATT
chr5	74636489	74636490	chr5:74636490:T:C	rs9176	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	74642975	74642976	chr5:74642976:G:A	rs1028967246	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	74855510	74855511	chr5:74855511:G:C	rs72764687	G	C	G	Sox1.mouse_HMG_2	2	1	+	4.185519472091004	-1.2070974627554338	TTGATTTCCATTCTG
chr5	74935287	74935288	chr5:74935288:T:C	rs115379355	T	C	T	Sox1.mouse_HMG_2	5	1	+	10.677820797151588	3.7690660178363666	ATGACTACCAGTCAA
chr5	74955186	74955187	chr5:74955187:C:T	rs184556268	C	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	75015669	75015670	chr5:75015670:G:A	rs116723430	G	A	G	Sox1.mouse_HMG_2	13	1	-	2.592111625473517	5.718464081444572	GTGAAAAGCATTCCT
chr5	75640504	75640505	chr5:75640505:G:A	rs77987663	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	75803988	75803989	chr5:75803989:T:C	rs1525775	T	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	76231030	76231031	chr5:76231031:T:C	rs765186300	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.081304720602028	0.13518703282937977	AGAAATTTCATTCAG
chr5	76313167	76313168	chr5:76313168:T:C	rs2913261	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	76372065	76372066	chr5:76372066:G:T	rs77758792	G	T	G	Sox1.mouse_HMG_2	0	1	-	2.977721754932056	3.6465979606504146	CTGCCTGCCAGTCAT
chr5	76426367	76426368	chr5:76426368:G:A	rs4615280	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	76426377	76426378	chr5:76426378:A:T	rs572675973	A	T	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	76431545	76431546	chr5:76431546:C:T	rs114683094	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	76431552	76431553	chr5:76431553:G:A	rs56032324	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr5	76595177	76595178	chr5:76595178:A:C	rs9293690	A	C	A	Sox1.mouse_HMG_2	0	1	+	9.380428531369676	8.711552325651317	ATGCATTCCATTCAT
chr5	76625146	76625147	chr5:76625147:A:G	rs457717	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	76658087	76658088	chr5:76658088:C:G	rs9293692	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	76669482	76669483	chr5:76669483:T:G	rs149585623	T	G	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	76684541	76684542	chr5:76684542:A:T	rs7709577	A	T	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	77075001	77075002	chr5:77075002:T:C	rs1529460	T	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	77171862	77171863	chr5:77171863:A:G	rs10473989	A	G	A	Sox1.mouse_HMG_2	6	1	-	2.4238256252715615	-1.0875839426754088	CTGGCTTCCAGTCAG
chr5	77177842	77177843	chr5:77177843:T:C	rs72765162	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	77177869	77177870	chr5:77177870:T:C	rs72765163	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	77223080	77223081	chr5:77223081:G:T	rs6870261	G	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr5	77326424	77326425	chr5:77326425:G:A	rs16874184	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	77383574	77383575	chr5:77383575:T:C	rs55753522	T	C	T	Sox1.mouse_HMG_2	6	1	-	5.784872091372844	4.3446946695042055	GGCAATACCATTCAT
chr5	77561087	77561088	chr5:77561088:T:C	chr5:77561088:T:C	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	77751583	77751584	chr5:77751584:T:A	rs57856130	T	A	T	Sox1.mouse_HMG_2	11	1	+	4.860659966824076	-2.0480948124911444	TTGATTTACATTCTC
chr5	78144510	78144511	chr5:78144511:T:C	rs4364371	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	78286373	78286374	chr5:78286374:C:T	rs12656940	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	78286388	78286389	chr5:78286389:T:C	rs56156114	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.751258751689749	-2.1574960276254687	CTTAATCTCATTCAT
chr5	78287993	78287994	chr5:78287994:C:T	rs114778216	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	78288030	78288031	chr5:78288031:T:C	rs111680924	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr5	78472769	78472770	chr5:78472770:A:G	rs1560198	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	78500887	78500888	chr5:78500888:T:C	rs11737914	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	78508905	78508906	chr5:78508906:A:G	rs12697887	A	G	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr5	78508913	78508914	chr5:78508914:T:G	rs6874508	T	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	78598223	78598224	chr5:78598224:T:C	rs344657	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	78640872	78640873	chr5:78640873:T:C	rs1005890902	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	78655075	78655076	chr5:78655076:T:C	rs341919	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.191129137889244	-2.7176256414259767	TTGTATGTCATTCTT
chr5	78772160	78772161	chr5:78772161:C:T	rs2132537	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	78822242	78822243	chr5:78822243:A:C	rs10078690	A	C	A	Sox1.mouse_HMG_2	9	1	+	4.803348986333454	-2.105405792981767	AGGAATAACATTGAC
chr5	78904361	78904362	chr5:78904362:C:T	rs337860	C	T	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	79469188	79469189	chr5:79469189:T:C	rs9293784	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	79875563	79875564	chr5:79875564:G:A	rs182042	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	79932695	79932696	chr5:79932696:G:T	rs12658005	G	T	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	79956051	79956052	chr5:79956052:A:G	rs1032341	A	G	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	80054902	80054903	chr5:80054903:T:C	rs10474605	T	C	C	Sox1.mouse_HMG_2	5	1	+	5.173448768337976	-1.735306010977244	ATGAATCACACTCAG
chr5	80054925	80054926	chr5:80054926:T:C	rs1214989898	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	80057162	80057163	chr5:80057163:G:A	rs10474606	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	80153075	80153076	chr5:80153076:C:G	rs73125978	C	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	80165603	80165604	chr5:80165604:T:C	rs75946551	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	80176903	80176904	chr5:80176904:A:G	rs6866987	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	80198975	80198976	chr5:80198976:C:A	rs13359567	C	A	C	Sox1.mouse_HMG_2	0	1	-	9.39390509833801	9.463321931485421	GTGACTTACAGTCAG
chr5	80655210	80655211	chr5:80655211:G:A	rs6151598	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr5	80655212	80655213	chr5:80655213:A:G	rs6151599	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr5	80787811	80787812	chr5:80787812:G:A	rs33010	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr5	80930794	80930795	chr5:80930795:A:G	rs489018	A	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	81108526	81108527	chr5:81108527:T:C	rs78530156	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	81270860	81270861	chr5:81270861:A:G	rs60488995	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.305797588058504	-2.602957191256714	AGAAATAACAGTCAC
chr5	81554346	81554347	chr5:81554347:A:G	rs35340025	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	81851977	81851978	chr5:81851978:G:C	chr5:81851978:G:C	G	C	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	82633540	82633541	chr5:82633541:C:T	rs13188633	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	83027293	83027294	chr5:83027294:G:C	rs75682503	G	C	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	83027320	83027321	chr5:83027321:T:C	rs16900113	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	83099529	83099530	chr5:83099530:A:T	rs17284218	A	T	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	83338131	83338132	chr5:83338132:G:A	rs10514254	G	A	G	Sox1.mouse_HMG_2	4	1	-	9.46587660812555	5.026524906832398	TTGACTACCATTCTG
chr5	83479084	83479085	chr5:83479085:A:G	rs33599	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	83548908	83548909	chr5:83548909:T:C	rs309596	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	83655588	83655589	chr5:83655589:C:A	rs13155729	C	A	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	83727219	83727220	chr5:83727220:T:G	rs28571929	T	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	83924220	83924221	chr5:83924221:C:T	rs35871321	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr5	84080562	84080563	chr5:84080563:T:G	rs1559064	T	G	T	Sox1.mouse_HMG_2	9	1	-	4.22550783811032	-2.6832469412049	TAGAATAACAATCAC
chr5	84184971	84184972	chr5:84184972:G:A	rs79432188	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	84481457	84481458	chr5:84481458:A:G	rs186474715	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	84535500	84535501	chr5:84535501:G:A	rs116713052	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.307752700901953	5.008807520443028	ATGAATCGCACTCAA
chr5	84575803	84575804	chr5:84575804:G:A	rs77153276	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	84817608	84817609	chr5:84817609:A:C	rs34600720	A	C	a	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	84991002	84991003	chr5:84991003:A:C	rs115027802	A	C	A	Sox1.mouse_HMG_2	12	1	+	5.541492906009305	12.441941556475667	GTGACTTTCATTAAT
chr5	85210822	85210823	chr5:85210823:A:G	rs78299284	A	G	.	Sox1.mouse_HMG_2	4	1	+	6.587057084856933	-0.23435568430313966	ATCAATAACATTTAC
chr5	85210849	85210850	chr5:85210850:C:T	rs4432930	C	T	.	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr5	85671443	85671444	chr5:85671444:G:A	rs11748520	G	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	85823832	85823833	chr5:85823833:T:A	rs6870142	T	A	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr5	86015638	86015639	chr5:86015639:A:G	rs62362969	A	G	A	Sox1.mouse_HMG_2	3	1	+	3.0776397017373376	-3.8311150775778833	CTGAATAAGATCCAG
chr5	86123331	86123332	chr5:86123332:A:T	rs10038330	A	T	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	86172151	86172152	chr5:86172152:A:G	rs13181836	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	86619098	86619099	chr5:86619099:T:A	rs971223594	T	A	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	86680427	86680428	chr5:86680428:G:A	rs6885407	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	86759885	86759886	chr5:86759886:A:G	rs1363340	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr5	86878446	86878447	chr5:86878447:G:A	rs10054518	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	87099180	87099181	chr5:87099181:A:T	rs73773217	A	T	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	87099207	87099208	chr5:87099208:C:T	rs79267348	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr5	87121311	87121312	chr5:87121312:A:G	rs191150154	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	87394040	87394041	chr5:87394041:A:G	rs3093860	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	88093454	88093455	chr5:88093455:C:T	rs979617679	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr5	88145962	88145963	chr5:88145963:G:A	rs116594600	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr5	88401715	88401716	chr5:88401716:C:T	rs6870983	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	89271751	89271752	chr5:89271752:T:C	rs148428442	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	89272595	89272596	chr5:89272596:G:A	rs147611028	G	A	G	Sox1.mouse_HMG_2	1	1	+	3.5284229587976186	3.832894137876193	AGGAATGGCTTTCAT
chr5	89527196	89527197	chr5:89527197:G:A	rs6878642	G	A	A	Sox1.mouse_HMG_2	13	1	+	6.071306532116751	11.017424219889397	ATGAATGCCATTTGT
chr5	89709912	89709913	chr5:89709913:A:C	rs4254935	A	C	A	Sox1.mouse_HMG_2	5	1	-	4.171614838459284	-2.7371399408559367	ATCAATCTCAGTCAT
chr5	90222015	90222016	chr5:90222016:T:C	rs10059737	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.890161329593168	-0.055956358179480276	CTGAATGACAGTAAC
chr5	90338112	90338113	chr5:90338113:G:A	rs6895123	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	90390384	90390385	chr5:90390385:C:A	rs2935527	C	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	90640497	90640498	chr5:90640498:G:A	rs77657594	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	90640500	90640501	chr5:90640501:G:A	rs189245779	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	90939445	90939446	chr5:90939446:T:G	rs73771130	T	G	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	90939479	90939480	chr5:90939480:C:T	rs11749470	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	91269458	91269459	chr5:91269459:C:T	rs72786338	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr5	91281337	91281338	chr5:91281338:A:G	rs181543479	A	G	A	Sox1.mouse_HMG_2	6	1	+	5.217158795777403	3.7769813739087628	TTAACTAACATTCTG
chr5	91382192	91382193	chr5:91382193:T:C	rs1213649361	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.625830928811946	3.1856535069433076	ATGACTATCTGTCAT
chr5	91503934	91503935	chr5:91503935:A:G	rs10041527	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	91848840	91848841	chr5:91848841:G:A	rs6887393	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	91885953	91885954	chr5:91885954:G:A	rs72775206	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	91978061	91978062	chr5:91978062:A:T	rs10074517	A	T	A	Sox1.mouse_HMG_2	4	1	+	3.2946583788509023	-3.5267543903091707	TGGCATGACATTCAT
chr5	92712087	92712088	chr5:92712088:A:G	rs10075131	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	92770085	92770086	chr5:92770086:T:C	rs17604522	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	92889803	92889804	chr5:92889804:G:C	rs17082694	G	C	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	92900308	92900309	chr5:92900309:G:A	rs1817741	G	A	A	Sox1.mouse_HMG_2	12	1	-	4.5822041927590735	-0.09038291090918166	TTGATTTACATTCTG
chr5	93150916	93150917	chr5:93150917:T:C	rs114243455	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	93330885	93330886	chr5:93330886:T:C	rs6557081	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	93401709	93401710	chr5:93401710:G:A	rs183743252	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	94433897	94433898	chr5:94433898:T:C	rs75542324	T	C	t	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	94659883	94659884	chr5:94659884:A:G	rs11948061	A	G	-	Sox1.mouse_HMG_2	5	1	-	3.262651894026463	-3.646102885288757	ACGAATGCCATGCAC
chr5	94693369	94693370	chr5:94693370:G:A	rs56018722	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr5	94704435	94704436	chr5:94704436:C:T	chr5:94704436:C:T	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	94738006	94738007	chr5:94738007:T:C	rs771514236	T	C	T	Sox1.mouse_HMG_2	5	1	+	10.375732584823078	3.4669778055078573	CTAAATGCCATTCAT
chr5	94755070	94755071	chr5:94755071:G:A	rs113298408	G	A	G	Sox1.mouse_HMG_2	2	1	+	1.798739313336315	-2.846663219679902	CTGACTGGCTGTCAC
chr5	94847135	94847136	chr5:94847136:A:T	rs116508264	A	T	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr5	94847181	94847182	chr5:94847182:C:A	rs12518668	C	A	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	95026851	95026852	chr5:95026852:G:C	chr5:95026852:G:C	G	C	G	Sox1.mouse_HMG_2	8	1	-	5.198460254468342	-0.5200744080673662	TTGAATATCTGTCAC
chr5	95177641	95177642	chr5:95177642:C:T	rs71630704	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr5	95543429	95543430	chr5:95543430:C:T	rs2303649	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr5	95584261	95584262	chr5:95584262:A:G	rs6866194	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	95584296	95584297	chr5:95584297:G:T	rs188918161	G	T	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	95726738	95726739	chr5:95726739:A:G	rs75966684	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	96009536	96009537	chr5:96009537:A:C	rs1221847	A	C	C	Sox1.mouse_HMG_2	13	1	+	3.8219371332652066	-2.4987788758641405	CTGATTTGCATTTAT
chr5	96255875	96255876	chr5:96255876:G:A	rs12054709	G	A	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	96344525	96344526	chr5:96344526:A:G	rs2910933	A	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	96344534	96344535	chr5:96344535:C:A	rs2936431	C	A	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	96388499	96388500	chr5:96388500:G:A	rs73772387	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	96715906	96715907	chr5:96715907:C:T	rs563937617	C	T	C	Sox1.mouse_HMG_2	5	1	+	8.250607871944213	15.159362651259434	CTGAACTTCATTCAT
chr5	96715922	96715923	chr5:96715923:T:C	rs113974305	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	96726912	96726913	chr5:96726913:C:T	rs17478897	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr5	96726913	96726914	chr5:96726914:G:A	rs75508776	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	96869195	96869196	chr5:96869196:G:C	rs10515251	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	96877466	96877467	chr5:96877467:C:A	rs1230361	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	97118249	97118250	chr5:97118250:C:T	rs1035507	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	97158698	97158699	chr5:97158699:A:G	rs73143181	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr5	97617413	97617414	chr5:97617414:C:A	rs9935874	C	A	c	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr5	98121011	98121012	chr5:98121012:A:G	rs11952918	A	G	G	Sox1.mouse_HMG_2	9	1	-	4.720884291869077	4.720884291869077	GTGAATTTCTTTCTT
chr5	98144359	98144360	chr5:98144360:G:T	rs4315946	G	T	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	98206168	98206169	chr5:98206169:T:C	rs115307902	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.7207591831151605	2.076766875621929	ATGAATAACAGTGAG
chr5	98232412	98232413	chr5:98232413:A:C	rs146347780	A	C	a	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	98634943	98634944	chr5:98634944:T:C	rs1421634	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	98680026	98680027	chr5:98680027:A:G	rs10479228	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	98784137	98784138	chr5:98784138:A:C	rs2617512	A	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr5	98784159	98784160	chr5:98784160:A:G	rs970079	A	G	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	98827239	98827240	chr5:98827240:T:G	rs751878	T	G	G	Sox1.mouse_HMG_2	6	1	+	4.686056616772176	4.086884629644931	TTAAATTGGATTCAT
chr5	99450032	99450033	chr5:99450033:T:C	rs190092100	T	C	.	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	99587194	99587195	chr5:99587195:A:G	rs2682158	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	99906592	99906593	chr5:99906593:T:C	rs2968274	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	100122565	100122566	chr5:100122566:T:C	rs4429827	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	100175467	100175468	chr5:100175468:G:A	rs7730800	G	A	G	Sox1.mouse_HMG_2	12	1	-	8.252573873253466	3.579986769585208	TTGAATAGCATTCCA
chr5	100347562	100347563	chr5:100347563:T:C	rs150924	T	C	.	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr5	100347603	100347604	chr5:100347604:C:T	rs161515	C	T	.	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	100423551	100423552	chr5:100423552:G:A	rs4703098	G	A	.	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr5	100448411	100448412	chr5:100448412:T:G	rs4703100	T	G	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr5	100464800	100464801	chr5:100464801:G:T	rs72774653	G	T	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	100541320	100541321	chr5:100541321:G:A	rs26031	G	A	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	100691538	100691539	chr5:100691539:G:A	rs2590421	G	A	G	Sox1.mouse_HMG_2	0	1	-	5.033318373418723	4.7673751796492905	CTGACTAGCATTTTC
chr5	101306741	101306742	chr5:101306742:A:T	rs62384892	A	T	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	101638933	101638934	chr5:101638934:G:T	rs75764034	G	T	G	Sox1.mouse_HMG_2	11	1	-	5.848087971357038	5.848087971357038	ATGAATAGCATCCTC
chr5	101643189	101643190	chr5:101643190:T:G	rs2061861	T	G	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	101675992	101675993	chr5:101675993:G:C	rs66956014	G	C	G	Sox1.mouse_HMG_2	2	1	+	5.245197949148084	-0.1474189856983544	ATGACTCACATTTAC
chr5	101786883	101786884	chr5:101786884:T:C	rs1479078	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	101877769	101877770	chr5:101877770:C:G	rs7711567	C	G	G	Sox1.mouse_HMG_2	0	1	+	5.525494901341884	5.19013487442504	CTGAATTCCATTATT
chr5	101877783	101877784	chr5:101877784:T:C	rs10057567	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.525494901341884	4.650882558619148	CTGAATTCCATTATT
chr5	102226686	102226687	chr5:102226687:T:C	rs425765	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	102407998	102407999	chr5:102407999:T:C	rs1376899	T	C	T	Sox1.mouse_HMG_2	4	1	-	9.744112488326293	2.9226997191662174	TTGAATAACACTCAT
chr5	102591679	102591680	chr5:102591680:T:C	rs12188915	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	102617411	102617412	chr5:102617412:C:T	rs10067699	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	102681727	102681728	chr5:102681728:G:C	rs114984326	G	C	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	102715518	102715519	chr5:102715519:T:A	rs2545589	T	A	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	102970617	102970618	chr5:102970618:G:A	rs12652973	G	A	G	Sox1.mouse_HMG_2	1	1	+	9.2841096213251	9.588580800403676	AGGAATGGCATTCAG
chr5	103041156	103041157	chr5:103041157:G:A	rs111307170	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	103118734	103118735	chr5:103118735:C:T	rs34781	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	103122408	103122409	chr5:103122409:C:G	rs34786	C	G	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	103562333	103562334	chr5:103562334:A:C	rs1422041	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	103618540	103618541	chr5:103618541:G:A	rs1990905	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	103636338	103636339	chr5:103636339:C:T	rs57834247	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	103680072	103680073	chr5:103680073:G:T	rs1152169	G	T	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	103924056	103924057	chr5:103924057:T:C	rs246375	T	C	T	Sox1.mouse_HMG_2	4	1	-	6.33702560894984	-0.4843871602102331	TAGAATTGCATTCTC
chr5	104147499	104147500	chr5:104147500:A:G	rs139938108	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	104643417	104643418	chr5:104643418:C:T	rs161879	C	T	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	104817890	104817891	chr5:104817891:G:A	rs715375	G	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	105035648	105035649	chr5:105035649:G:A	rs4259147	G	A	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	105266063	105266064	chr5:105266064:C:T	rs74949901	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr5	105567083	105567084	chr5:105567084:A:G	rs4412090	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	105619892	105619893	chr5:105619893:C:T	rs56057326	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	106047478	106047479	chr5:106047479:G:T	rs75252900	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	106072961	106072962	chr5:106072962:T:C	rs142214697	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	106521493	106521494	chr5:106521494:A:G	rs7701553	A	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	106646355	106646356	chr5:106646356:C:T	rs28510213	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	106698014	106698015	chr5:106698015:A:G	rs6596693	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.8244135328307367	-3.023528045449544	GGGAATTACATGCAT
chr5	106796303	106796304	chr5:106796304:T:C	rs73200401	T	C	T	Sox1.mouse_HMG_2	0	1	-	3.478087351182624	2.4738511185474215	ATTACTAGCATTCTC
chr5	106975546	106975547	chr5:106975547:T:G	rs4245987	T	G	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	107030513	107030514	chr5:107030514:T:C	rs4264928	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr5	107119844	107119845	chr5:107119845:G:A	rs141004347	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	107122827	107122828	chr5:107122828:T:G	rs114117784	T	G	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	107425470	107425471	chr5:107425471:T:C	chr5:107425471:T:C	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	107434936	107434937	chr5:107434937:T:C	rs152609	T	C	t	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr5	107459441	107459442	chr5:107459442:T:A	rs12523318	T	A	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	107459490	107459491	chr5:107459491:T:C	rs3844750	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	107698455	107698456	chr5:107698456:T:C	rs4957710	T	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	107960053	107960054	chr5:107960054:C:G	rs7721143	C	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr5	107982752	107982753	chr5:107982753:C:T	rs288194	C	T	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	108036699	108036700	chr5:108036700:A:G	rs137893808	A	G	A	Sox1.mouse_HMG_2	6	1	+	2.5265043850325597	1.0863269631639199	CCGGCTACCATTCAT
chr5	108340516	108340517	chr5:108340517:T:C	rs72793334	T	C	T	Sox1.mouse_HMG_2	11	1	+	7.529802806018755	0.6210480267035344	AAGAATTACATTCTA
chr5	108461836	108461837	chr5:108461837:T:C	rs77122952	T	C	C	Sox1.mouse_HMG_2	6	1	-	3.2864859893437885	1.8463085674751496	CAGAATAGCATGCAA
chr5	108641416	108641417	chr5:108641417:A:C	rs67718253	A	C	A	Sox1.mouse_HMG_2	6	1	-	7.601774712979883	7.00260272585264	ATGCATTTCATTCAA
chr5	108753528	108753529	chr5:108753529:C:T	rs1478747701	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.066149792635102	-1.5782768977468846	CTAAATTCCTTTCAT
chr5	109255577	109255578	chr5:109255578:T:C	rs1363212	T	C	t	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr5	109278679	109278680	chr5:109278680:G:T	rs78518991	G	T	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr5	109409142	109409143	chr5:109409143:C:A	rs75761375	C	A	A	Sox1.mouse_HMG_2	7	1	+	7.556178460541123	7.952863181209192	ATGATTACCAGTCAT
chr5	109411828	109411829	chr5:109411829:A:G	rs724719	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	109656763	109656764	chr5:109656764:A:G	rs25916	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	109786754	109786755	chr5:109786755:T:C	rs76001272	T	C	T	Sox1.mouse_HMG_2	10	1	+	9.103700987177385	2.255759408897103	ATGACTACTATTCAT
chr5	110321367	110321368	chr5:110321368:G:C	rs13167376	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	110916779	110916780	chr5:110916780:G:A	rs17132507	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr5	111131375	111131376	chr5:111131376:A:G	rs1457113	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	111134193	111134194	chr5:111134194:C:T	rs80183325	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	111154392	111154393	chr5:111154393:C:G	chr5:111154393:C:G	C	G	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	111207130	111207131	chr5:111207131:G:C	rs56392800	G	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	111232885	111232886	chr5:111232886:G:C	rs56197011	G	C	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	111279296	111279297	chr5:111279297:T:C	rs78345930	T	C	T	Sox1.mouse_HMG_2	3	1	-	5.215083994102123	-1.6936707852130966	TTGAACTACAGTCAC
chr5	111448090	111448091	chr5:111448091:A:C	rs952118718	A	C	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	111476683	111476684	chr5:111476684:C:T	rs31621	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	111681239	111681240	chr5:111681240:T:G	rs72663311	T	G	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	111681267	111681268	chr5:111681268:C:G	rs6594529	C	G	C	Sox1.mouse_HMG_2	8	1	+	6.786989179487408	1.0684545169516992	CTGACTTACAATCAT
chr5	111704558	111704559	chr5:111704559:C:G	rs73787341	C	G	C	Sox1.mouse_HMG_2	12	1	+	5.014412122976596	-1.8860365274897681	AAAACTTACATTCAT
chr5	111848736	111848737	chr5:111848737:A:G	rs6882628	A	G	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	111869867	111869868	chr5:111869868:A:G	rs74555799	A	G	A	Sox1.mouse_HMG_2	14	1	-	4.275491770169338	3.4008794274466014	AAGAAATTCATTCAT
chr5	111917571	111917572	chr5:111917572:T:C	rs12520308	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.104526148369493	-1.8042286309457287	ATGGATTACATTTAT
chr5	112167008	112167009	chr5:112167009:T:C	rs6872947	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	112197088	112197089	chr5:112197089:T:A	rs80158387	T	A	T	Sox1.mouse_HMG_2	1	1	+	5.671116795921769	1.0271244884285367	ATGACTTTCATTAAC
chr5	112263698	112263699	chr5:112263699:C:A	rs75442414	C	A	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	112329946	112329947	chr5:112329947:T:C	rs113933645	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	112333014	112333015	chr5:112333015:T:C	rs12517378	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.349114210444735	0.7051219029514996	ATAAATTGCATTTAA
chr5	112476287	112476288	chr5:112476288:G:T	rs72797814	G	T	G	Sox1.mouse_HMG_2	5	1	+	6.133279653956132	13.042034433271352	ATGAAGATCAGTCAC
chr5	112552390	112552391	chr5:112552391:A:G	rs58167369	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	112708315	112708316	chr5:112708316:T:C	rs141935736	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	112983414	112983415	chr5:112983415:T:A	rs33549	T	A	t	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	113242981	113242982	chr5:113242982:T:C	rs67063423	T	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	113279346	113279347	chr5:113279347:G:A	rs13190054	G	A	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	113344375	113344376	chr5:113344376:C:A	rs34625553	C	A	C	Sox1.mouse_HMG_2	2	1	-	5.393859835435269	-1.5028344961874431	AAGAATTGCAGTCTT
chr5	113581580	113581581	chr5:113581581:T:G	rs11748794	T	G	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	113625104	113625105	chr5:113625105:A:C	rs12719164	A	C	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	114497726	114497727	chr5:114497727:G:A	rs1834400	G	A	A	Sox1.mouse_HMG_2	2	1	+	5.200142757704348	0.5547402246881311	CTGAAGCCCATTCAT
chr5	114685041	114685042	chr5:114685042:G:C	rs116252606	G	C	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	114912689	114912690	chr5:114912690:G:T	rs10478203	G	T	G	Sox1.mouse_HMG_2	9	1	+	3.562505408388447	3.562505408388447	TTGAATACAGTTCAC
chr5	115056710	115056711	chr5:115056711:C:A	rs4235768	C	A	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	115095795	115095796	chr5:115095796:A:G	rs192155646	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.609246319796865	4.734633977074129	CTGAATATGATTTAT
chr5	115214733	115214734	chr5:115214734:T:A	rs180938557	T	A	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	115329173	115329174	chr5:115329174:T:G	rs1811523	T	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	115351431	115351432	chr5:115351432:T:C	rs57239247	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	115414206	115414207	chr5:115414207:G:T	rs2605198	G	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr5	115473662	115473663	chr5:115473663:T:C	rs7735894	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	115489970	115489971	chr5:115489971:T:C	rs6887979	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	115518987	115518988	chr5:115518988:C:T	rs10041776	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	115648249	115648250	chr5:115648250:C:G	rs7723429	C	G	g	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	115653260	115653261	chr5:115653261:G:T	rs13164059	G	T	t	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	115966929	115966930	chr5:115966930:C:T	rs150028473	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	115966953	115966954	chr5:115966954:G:A	rs115455153	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	116060766	116060767	chr5:116060767:T:G	rs11241351	T	G	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	116095007	116095008	chr5:116095008:T:C	rs9687859	T	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	116108223	116108224	chr5:116108224:C:T	rs57777176	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	116265378	116265379	chr5:116265379:G:A	rs37179	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	116814789	116814790	chr5:116814790:T:C	rs10073500	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr5	116843177	116843178	chr5:116843178:C:T	rs13180934	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	117088848	117088849	chr5:117088849:T:C	rs10477559	T	C	T	Sox1.mouse_HMG_2	7	1	-	5.070919240388151	4.369864420847075	ATGTATAACATTTAC
chr5	117096310	117096311	chr5:117096311:T:C	rs73260816	T	C	C	Sox1.mouse_HMG_2	0	1	-	8.824808951485267	7.820572718850066	ATGAATAGCACTCAG
chr5	117162206	117162207	chr5:117162207:T:C	rs114993383	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	117364560	117364561	chr5:117364561:G:A	rs10055981	G	A	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	117396759	117396760	chr5:117396760:A:G	rs2624485	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	117412760	117412761	chr5:117412761:C:G	rs2560576	C	G	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	117803527	117803528	chr5:117803528:A:T	rs11241434	A	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr5	118487650	118487651	chr5:118487651:C:T	rs6859532	C	T	T	Sox1.mouse_HMG_2	10	1	-	2.8492132953896547	-1.2461307671655288	CTGAACAACAGTCTG
chr5	118548992	118548993	chr5:118548993:A:T	rs145389132	A	T	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	119272463	119272464	chr5:119272464:G:A	rs75304199	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	119272479	119272480	chr5:119272480:G:A	rs13361153	G	A	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	119397081	119397082	chr5:119397082:C:A	rs75690946	C	A	C	Sox1.mouse_HMG_2	6	1	-	2.9605772948932474	3.5597492820204915	GTGAATGGCATACTA
chr5	119399411	119399412	chr5:119399412:A:G	rs1047322	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	119459063	119459064	chr5:119459064:T:C	rs150646508	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	119625678	119625679	chr5:119625679:G:A	rs2561513	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	119991621	119991622	chr5:119991622:C:T	rs12653986	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr5	119991642	119991643	chr5:119991643:A:G	rs12658102	A	G	G	Sox1.mouse_HMG_2	9	1	+	3.4990054748086106	-3.409749304506609	TTGAATGCCATGCTG
chr5	120304975	120304976	chr5:120304976:T:A	rs374345534	T	A	t	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr5	120446127	120446128	chr5:120446128:T:C	chr5:120446128:T:C	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr5	120517262	120517263	chr5:120517263:A:G	rs17491078	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	120644601	120644602	chr5:120644602:C:T	rs62377787	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	120649607	120649608	chr5:120649608:G:A	rs11949516	G	A	G	Sox1.mouse_HMG_2	6	1	+	7.199661823358316	8.639839245226957	CTGAATGACATTAAA
chr5	121019183	121019184	chr5:121019184:T:C	rs2973179	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	121366708	121366709	chr5:121366709:A:T	rs7705198	A	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr5	121366714	121366715	chr5:121366715:G:C	rs112237220	G	C	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	121433779	121433780	chr5:121433780:A:G	rs4895305	A	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr5	121706809	121706810	chr5:121706810:G:C	rs12656268	G	C	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	121748619	121748620	chr5:121748620:C:A	rs726384	C	A	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	121784297	121784298	chr5:121784298:G:C	rs6899041	G	C	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	121963090	121963091	chr5:121963091:G:T	rs77298376	G	T	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr5	121963099	121963100	chr5:121963100:A:C	rs113476723	A	C	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	122014224	122014225	chr5:122014225:T:C	rs76983994	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	122118487	122118488	chr5:122118488:C:T	rs76188166	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	122181341	122181342	chr5:122181342:G:A	rs73291524	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	122316829	122316830	chr5:122316830:G:A	rs7701494	G	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	122385407	122385408	chr5:122385408:A:G	rs192510830	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	122493299	122493300	chr5:122493300:A:C	rs963083457	A	C	A	Sox1.mouse_HMG_2	6	1	+	6.315768333598235	1.9633533309098703	ATGAATACCAGCCAG
chr5	122592115	122592116	chr5:122592116:T:G	rs77575759	T	G	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr5	122649342	122649343	chr5:122649343:C:T	rs11241653	C	T	C	Sox1.mouse_HMG_2	1	1	-	7.841986172081792	8.146457351160365	AGGAATTGCATTCTT
chr5	122907028	122907029	chr5:122907029:C:T	rs112801206	C	T	C	Sox1.mouse_HMG_2	14	1	+	8.816993073417473	9.691605416140208	TTGAATAACATTGAC
chr5	122907036	122907037	chr5:122907037:G:T	rs34844238	G	T	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	123119848	123119849	chr5:123119849:C:T	rs116393857	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	123276492	123276493	chr5:123276493:C:T	rs11739802	C	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	123415152	123415153	chr5:123415153:T:C	rs6595447	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.07657883523744	-1.7448339339226329	TTGCATAGCAGTCAG
chr5	123415172	123415173	chr5:123415173:G:C	rs6595448	G	C	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	123422472	123422473	chr5:123422473:A:T	rs62377766	A	T	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	123820159	123820160	chr5:123820160:A:G	rs257014	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	123820165	123820166	chr5:123820166:A:G	rs117799513	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	123845422	123845423	chr5:123845423:G:A	rs34744654	G	A	A	Sox1.mouse_HMG_2	4	1	-	2.7117785611626233	-1.7275731401305272	TTGACTGCCTGTCAT
chr5	123951829	123951830	chr5:123951830:T:C	rs189503449	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	124043452	124043453	chr5:124043453:G:C	rs10478600	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	124126337	124126338	chr5:124126338:C:T	rs17151233	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	124126560	124126561	chr5:124126561:T:C	rs6873606	T	C	C	Sox1.mouse_HMG_2	13	1	-	9.174884794954293	4.228767107181644	TTGAATTTGATTCAT
chr5	124237116	124237117	chr5:124237117:A:T	rs316388	A	T	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	124456434	124456435	chr5:124456435:A:G	rs60733790	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	124463284	124463285	chr5:124463285:G:A	rs4574539	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	124624753	124624754	chr5:124624754:G:A	rs6871217	G	A	G	Sox1.mouse_HMG_2	4	1	-	4.151955983031263	-0.28739571826188814	TTGCCTACCAGTCAT
chr5	124652018	124652019	chr5:124652019:G:A	rs570026959	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	124663171	124663172	chr5:124663172:T:C	rs140484762	T	C	T	Sox1.mouse_HMG_2	11	1	+	2.914491901370347	-3.9942628779448723	CAGCATTCCATTCAG
chr5	124952430	124952431	chr5:124952431:C:T	rs114764957	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	124980337	124980338	chr5:124980338:C:T	rs4357030	C	T	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	125176651	125176652	chr5:125176652:T:C	rs11743924	T	C	T	Sox1.mouse_HMG_2	10	1	+	5.093396318777694	-1.7545452595025872	CTGAATTTGATTCTG
chr5	125326160	125326161	chr5:125326161:A:G	rs146365504	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.917017271915383	-1.9917375073998367	AACAATTTCATTCAC
chr5	125373205	125373206	chr5:125373206:A:G	rs1517809	A	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	125705061	125705062	chr5:125705062:T:G	rs62385965	T	G	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	125705085	125705086	chr5:125705086:A:G	rs181184012	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.200688631012533	-2.7080661483026875	ATGCCTTACATTCTT
chr5	125894613	125894614	chr5:125894614:G:A	rs115062595	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	126222138	126222139	chr5:126222139:G:A	rs138785810	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	126280835	126280836	chr5:126280836:A:G	rs7709180	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	126326799	126326800	chr5:126326800:G:A	rs62391831	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	126342138	126342139	chr5:126342139:A:T	rs77593349	A	T	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	126403111	126403112	chr5:126403112:A:C	rs2112480	A	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	126433206	126433207	chr5:126433207:G:A	rs34781836	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	126453515	126453516	chr5:126453516:A:G	rs11241893	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	126665278	126665279	chr5:126665279:G:T	rs62392513	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	126697174	126697175	chr5:126697175:G:T	rs77423366	G	T	G	Sox1.mouse_HMG_2	8	1	-	4.787538972461421	-0.06195784305067675	GGAAATGGCATTCAT
chr5	126817052	126817053	chr5:126817053:C:A	rs2973603	C	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	127097553	127097554	chr5:127097554:C:T	rs76581668	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	127275057	127275058	chr5:127275058:A:C	rs60477974	A	C	A	Sox1.mouse_HMG_2	6	1	-	4.9389457227409865	4.339773735613741	CAGACTTTCATTCTT
chr5	127299627	127299628	chr5:127299628:C:A	rs189889369	C	A	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	127309641	127309642	chr5:127309642:T:C	rs2585190	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.415099920190062	-1.4936548591251584	CTAAATAATATTCAG
chr5	127309650	127309651	chr5:127309651:G:A	rs2546086	G	A	A	Sox1.mouse_HMG_2	14	1	+	5.415099920190062	5.250458672295114	CTAAATAATATTCAG
chr5	127407264	127407265	chr5:127407265:T:C	rs76091281	T	C	C	Sox1.mouse_HMG_2	7	1	-	5.33610260275447	4.635047783213394	AAGAATCACATTCTT
chr5	127556881	127556882	chr5:127556882:C:A	rs449278	C	A	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	127564252	127564253	chr5:127564253:G:A	rs74706298	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	127650664	127650665	chr5:127650665:A:G	rs791077	A	G	A	Sox1.mouse_HMG_2	5	1	-	6.8000452615058125	-0.10870951780940669	GTAACTTGCATTCAG
chr5	127754535	127754536	chr5:127754536:A:C	rs28379238	A	C	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	127786619	127786620	chr5:127786620:G:A	rs10463833	G	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	127841371	127841372	chr5:127841372:C:T	rs245199	C	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	127891883	127891884	chr5:127891884:G:C	rs151852	G	C	N	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr5	128513855	128513856	chr5:128513856:C:G	chr5:128513856:C:G	C	G	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	128513859	128513860	chr5:128513860:T:C	chr5:128513860:T:C	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	128590496	128590497	chr5:128590497:A:C	rs6883598	A	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	128672556	128672557	chr5:128672557:A:G	rs10064348	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	128750262	128750263	chr5:128750263:C:A	rs137974904	C	A	C	Sox1.mouse_HMG_2	3	1	+	2.643802981077494	9.552557760392714	CTGCAGACCATTCAT
chr5	128966594	128966595	chr5:128966595:C:T	rs144670577	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	128967040	128967041	chr5:128967041:A:T	rs2526248	A	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	128989331	128989332	chr5:128989332:T:G	rs7730969	T	G	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	129095729	129095730	chr5:129095730:G:A	rs73232500	G	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	129130188	129130189	chr5:129130189:T:G	rs76601561	T	G	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	129142062	129142063	chr5:129142063:A:G	rs67996334	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	129383138	129383139	chr5:129383139:C:T	rs17165195	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	129672117	129672118	chr5:129672118:G:A	rs30663	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.059750556832283	4.760805376373359	CTGAATTGCATACTG
chr5	130138577	130138578	chr5:130138578:C:G	rs185811409	C	G	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	130289413	130289414	chr5:130289414:G:C	rs1990022	G	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	130795243	130795244	chr5:130795244:T:C	rs73788326	T	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	130860417	130860418	chr5:130860418:C:A	rs543769837	C	A	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	130860418	130860419	chr5:130860419:A:T	rs113035019	A	T	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	130976250	130976251	chr5:130976251:T:C	rs4637539	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	130980866	130980867	chr5:130980867:T:C	rs2419936	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	131069046	131069047	chr5:131069047:C:G	rs72803723	C	G	C	Sox1.mouse_HMG_2	14	1	+	7.302613396737363	7.0241576226723605	CTAAATTACATTCTC
chr5	131541980	131541981	chr5:131541981:A:C	rs77964995	A	C	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr5	131541990	131541991	chr5:131541991:T:C	rs10059807	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	132202924	132202925	chr5:132202925:A:T	rs76029035	A	T	A	Sox1.mouse_HMG_2	1	1	-	4.432284249586525	-0.21170805790670816	CTGATTTTCAGTCAG
chr5	132799679	132799680	chr5:132799680:T:C	rs256869	T	C	T	Sox1.mouse_HMG_2	14	1	+	3.8936062587055633	3.0189939159828274	AGGAATGCCACTCAT
chr5	132822006	132822007	chr5:132822007:A:G	rs60986882	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	132822024	132822025	chr5:132822025:T:G	rs983809436	T	G	T	Sox1.mouse_HMG_2	14	1	-	7.286068898099812	7.729165920059762	CAGAATATCAGTCAA
chr5	132866360	132866361	chr5:132866361:T:C	rs142413852	T	C	T	Sox1.mouse_HMG_2	13	1	-	2.988825224165491	-1.9572924636071574	TGGAATCCCAGTCAG
chr5	133203790	133203791	chr5:133203791:T:C	rs4533941	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	133386910	133386911	chr5:133386911:A:G	rs17685127	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	133514644	133514645	chr5:133514645:A:G	rs116577322	A	G	A	Sox1.mouse_HMG_2	13	1	+	3.020369535615353	-1.9257481521572952	ATTAAAAGCATTCAT
chr5	133787992	133787993	chr5:133787993:A:T	rs77163804	A	T	A	Sox1.mouse_HMG_2	5	1	-	6.177934472803599	-0.7308203065116209	GTGACTCTCAGTCAT
chr5	133824930	133824931	chr5:133824931:C:T	rs3851487	C	T	C	Sox1.mouse_HMG_2	9	1	+	3.7117146139997654	3.7117146139997654	GTGAATCCCCTTCAG
chr5	133843230	133843231	chr5:133843231:G:A	rs2431559	G	A	G	Sox1.mouse_HMG_2	0	1	+	3.2507701602926584	4.255006392927861	GTGCATCTCATTCAG
chr5	134146057	134146058	chr5:134146058:C:A	rs73790191	C	A	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	134151949	134151950	chr5:134151950:A:G	rs9327678	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.82105826249817	-2.087696516817051	AAGGATAACATTCAG
chr5	134356004	134356005	chr5:134356005:A:G	rs73289860	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr5	134506369	134506370	chr5:134506370:C:A	rs190603843	C	A	C	Sox1.mouse_HMG_2	3	1	-	4.551336829061412	4.551336829061412	CTGGCTGGCATTCAC
chr5	135025371	135025372	chr5:135025372:G:A	rs28415457	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	135047131	135047132	chr5:135047132:C:G	rs72800402	C	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr5	135047139	135047140	chr5:135047140:T:C	rs254554	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.120003442957094	-2.788751336358126	AAGAATAGCATCCAG
chr5	135072575	135072576	chr5:135072576:G:C	rs12517780	G	C	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr5	135239066	135239067	chr5:135239067:C:T	rs141691356	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.014458437031127	4.715513256572203	GTAAATTGCATTCCT
chr5	135332640	135332641	chr5:135332641:C:T	rs2134147	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	135455369	135455370	chr5:135455370:T:A	rs6892397	T	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr5	135636474	135636475	chr5:135636475:G:A	rs112800818	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr5	135664120	135664121	chr5:135664121:A:G	rs79708523	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	135693704	135693705	chr5:135693705:T:C	rs4246783	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	135723338	135723339	chr5:135723339:C:G	rs13190526	C	G	G	Sox1.mouse_HMG_2	2	1	-	8.399489643604976	3.0068727087585367	CTGGATACCATTCAG
chr5	135837498	135837499	chr5:135837499:A:C	rs6890039	A	C	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	135877368	135877369	chr5:135877369:G:T	rs13354479	G	T	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr5	135976203	135976204	chr5:135976204:A:T	rs2526155	A	T	T	Sox1.mouse_HMG_2	13	1	-	4.877643135171636	8.072006688329928	TTGATTTTCATTCTT
chr5	135993664	135993665	chr5:135993665:A:G	rs30741	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	136046551	136046552	chr5:136046552:G:A	rs3749786	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	136063492	136063493	chr5:136063493:C:A	rs17169782	C	A	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	136082342	136082343	chr5:136082343:G:A	rs917303	G	A	G	Sox1.mouse_HMG_2	7	1	+	4.5756005578514545	5.27665537739253	CTGAATAGCATATAT
chr5	136082364	136082365	chr5:136082365:C:T	rs112562452	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	136892302	136892303	chr5:136892303:A:G	rs7732903	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	137102082	137102083	chr5:137102083:C:T	rs1160840	C	T	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	137128121	137128122	chr5:137128122:A:G	rs2905975	A	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	137220695	137220696	chr5:137220696:G:A	rs112455830	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	137252401	137252402	chr5:137252402:A:G	rs114647932	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.524583133652776	-1.3233584446275046	ATGACTGCCATCCAC
chr5	137273912	137273913	chr5:137273913:T:C	rs17171273	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	137300855	137300856	chr5:137300856:T:G	rs916852	T	G	G	Sox1.mouse_HMG_2	3	1	-	5.119518888144818	-1.7892358911704032	GTGACCTCCATTCAC
chr5	137336713	137336714	chr5:137336714:T:C	rs10491305	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr5	137595942	137595943	chr5:137595943:G:A	rs2189083	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	137622602	137622603	chr5:137622603:C:A	rs142046053	C	A	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr5	137625481	137625482	chr5:137625482:G:A	rs11950275	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	137739240	137739241	chr5:137739241:A:C	rs116056253	A	C	A	Sox1.mouse_HMG_2	5	1	-	3.6755641807355843	-3.233190598579638	CTAATTTACATTCAC
chr5	137978779	137978780	chr5:137978780:T:C	rs17523263	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	138815047	138815048	chr5:138815048:T:G	rs4835703	T	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	138935497	138935498	chr5:138935498:A:T	rs3749663	A	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	139020273	139020274	chr5:139020274:G:T	rs10075951	G	T	T	Sox1.mouse_HMG_2	6	1	+	6.959312221736336	7.558484208863582	CTGAATGCCTTTCAG
chr5	139050106	139050107	chr5:139050107:C:T	rs6882583	C	T	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	139061410	139061411	chr5:139061411:T:C	rs11950819	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	139292549	139292550	chr5:139292550:C:G	rs140057995	C	G	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	139504088	139504089	chr5:139504089:T:C	rs145530582	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	139632684	139632685	chr5:139632685:C:A	rs115105415	C	A	C	Sox1.mouse_HMG_2	14	1	+	4.170739390534601	3.727642368574651	GAGACTTTCAGTCAC
chr5	140177613	140177614	chr5:140177614:C:T	rs192402591	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	140309919	140309920	chr5:140309920:A:G	rs10077671	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	140565134	140565135	chr5:140565135:C:G	rs114317763	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	140565240	140565241	chr5:140565241:T:C	rs250429	T	C	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	141245465	141245466	chr5:141245466:C:T	rs77130508	C	T	c	Sox1.mouse_HMG_2	0	1	-	7.108614210543823	8.112850443179026	GAGAATAGCATTCTC
chr5	141320269	141320270	chr5:141320270:G:A	rs145439224	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	141320272	141320273	chr5:141320273:T:G	rs11547633	T	G	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	141474320	141474321	chr5:141474321:A:G	rs75620387	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr5	141564645	141564646	chr5:141564646:T:G	rs79467235	T	G	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	141564657	141564658	chr5:141564658:G:C	rs112288952	G	C	G	Sox1.mouse_HMG_2	14	1	-	4.268973986218332	3.9905182121533294	CTGAGTTTCATTCTC
chr5	141725791	141725792	chr5:141725792:T:C	rs114804753	T	C	t	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	141826276	141826277	chr5:141826277:G:C	rs72794063	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.856810215150329	-2.0436384353160357	TACAATTTCATTCAT
chr5	141826295	141826296	chr5:141826296:C:T	rs17705472	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	141956698	141956699	chr5:141956699:G:T	rs164075	G	T	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr5	142013617	142013618	chr5:142013618:A:G	rs186550381	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	142028801	142028802	chr5:142028802:A:G	rs72796098	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	142028805	142028806	chr5:142028806:T:C	rs153154	T	C	C	Sox1.mouse_HMG_2	1	1	+	4.398690846007609	-0.24530146148562337	CTGTATAGAATTCAT
chr5	142060949	142060950	chr5:142060950:C:T	rs252148	C	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	142145046	142145047	chr5:142145047:C:T	rs10068466	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	142316138	142316139	chr5:142316139:C:T	rs13359419	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	142341679	142341680	chr5:142341680:G:T	rs930892	G	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	142669720	142669721	chr5:142669721:G:T	rs145837964	G	T	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	142676768	142676769	chr5:142676769:G:A	rs80209529	G	A	G	Sox1.mouse_HMG_2	14	1	-	3.177481219244906	4.052093561967642	CTCACTGCCATTCTC
chr5	142820926	142820927	chr5:142820927:T:C	rs77003723	T	C	T	Sox1.mouse_HMG_2	11	1	+	3.1875711294251126	-3.721183649890107	ATGACTAGCCTTCTG
chr5	142820943	142820944	chr5:142820944:G:A	rs28422940	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	143065805	143065806	chr5:143065806:G:A	rs57064036	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr5	143172960	143172961	chr5:143172961:T:C	rs17209139	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	143496911	143496912	chr5:143496912:G:A	rs2028833	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	143782770	143782771	chr5:143782771:C:T	rs723677	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	143827534	143827535	chr5:143827535:T:A	rs2161116	T	A	A	Sox1.mouse_HMG_2	0	1	+	4.191129137889242	5.125948537377034	TTGAATGTCTTTCTT
chr5	143895190	143895191	chr5:143895191:T:C	rs2112195	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	143896980	143896981	chr5:143896981:A:G	rs72795642	A	G	G	Sox1.mouse_HMG_2	0	1	+	4.083584386118739	3.079348153483536	AGGACTGACATTTAT
chr5	144017531	144017532	chr5:144017532:A:G	rs77864057	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	144027544	144027545	chr5:144027545:T:C	rs411200	T	C	C	Sox1.mouse_HMG_2	14	1	+	8.004789546914006	7.130177204191271	ATGAATAAAATTTAT
chr5	144121878	144121879	chr5:144121879:C:A	rs143651641	C	A	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	144126097	144126098	chr5:144126098:C:G	rs11167843	C	G	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	144177434	144177435	chr5:144177435:A:G	rs1113686	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	144357245	144357246	chr5:144357246:G:C	rs184942	G	C	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	144359431	144359432	chr5:144359432:G:A	rs13187326	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	144375949	144375950	chr5:144375950:C:G	chr5:144375950:C:G	C	G	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	144645502	144645503	chr5:144645503:T:G	rs185438	T	G	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	145076420	145076421	chr5:145076421:T:C	rs983180518	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	145203496	145203497	chr5:145203497:A:T	rs35282350	A	T	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	145510460	145510461	chr5:145510461:G:T	rs78867305	G	T	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr5	145636315	145636316	chr5:145636316:G:A	rs73313748	G	A	a	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	145740520	145740521	chr5:145740521:A:G	rs13166750	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.456891736283535	-2.4518630430316857	CTAACTAGCATTTAT
chr5	145776165	145776166	chr5:145776166:T:C	rs990385	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	145938934	145938935	chr5:145938935:C:A	rs73792742	C	A	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	145939049	145939050	chr5:145939050:A:G	rs73792743	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	145944030	145944031	chr5:145944031:A:G	rs567629401	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	146545371	146545372	chr5:146545372:G:T	rs7709368	G	T	g	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr5	146592529	146592530	chr5:146592530:T:C	rs10515574	T	C	C	Sox1.mouse_HMG_2	1	1	+	7.506373246898737	2.8623809394055035	TTGACTAGAATTCAG
chr5	146650120	146650121	chr5:146650121:A:G	rs543739507	A	G	A	Sox1.mouse_HMG_2	14	1	-	8.027811640055344	7.153199297332608	GTGACTGACATTTAT
chr5	146920590	146920591	chr5:146920591:T:C	rs319161	T	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr5	146940442	146940443	chr5:146940443:A:C	rs1036204	A	C	A	Sox1.mouse_HMG_2	5	1	-	9.140340397941076	2.2315856186258554	CTGACTGGCATTCTT
chr5	146966334	146966335	chr5:146966335:C:T	rs200812354	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	147081440	147081441	chr5:147081441:G:A	rs568577969	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	147112556	147112557	chr5:147112557:C:G	rs6886622	C	G	C	Sox1.mouse_HMG_2	8	1	+	6.003655764043667	0.2851211015079588	GTGAATATCAGGCAT
chr5	147224063	147224064	chr5:147224064:A:G	rs116415196	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr5	147234298	147234299	chr5:147234299:G:A	rs31034	G	A	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	147484481	147484482	chr5:147484482:G:A	rs1243317734	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr5	147516819	147516820	chr5:147516820:G:A	rs6580467	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.7101899455980676	3.2492454918909606	TTGACTACCTTTCTT
chr5	147764354	147764355	chr5:147764355:G:A	rs776789404	G	A	G	Sox1.mouse_HMG_2	0	1	-	5.958954809926222	5.69301161615679	CTGAATTCCTGTCAT
chr5	147781355	147781356	chr5:147781356:G:T	rs2436425	G	T	G	Sox1.mouse_HMG_2	2	1	+	4.497324807876235	-2.3993695237464743	ATGAATACATTTCAC
chr5	147803191	147803192	chr5:147803192:G:C	rs76031156	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	147805156	147805157	chr5:147805157:C:T	rs73274040	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	148585094	148585095	chr5:148585095:C:A	rs10040819	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	148733859	148733860	chr5:148733860:A:G	rs149788102	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	148745446	148745447	chr5:148745447:T:C	rs59598688	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	148848932	148848933	chr5:148848933:G:A	rs11959113	G	A	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	148953951	148953952	chr5:148953952:A:G	rs72831028	A	G	a	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	148961157	148961158	chr5:148961158:A:C	rs4513681	A	C	C	Sox1.mouse_HMG_2	5	1	-	3.642187876241295	-3.2665669030739264	TTGAATACTTTTCAT
chr5	149133860	149133861	chr5:149133861:G:T	rs79239742	G	T	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	149176558	149176559	chr5:149176559:A:G	rs79141124	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	149230164	149230165	chr5:149230165:C:T	rs2918266	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	149256898	149256899	chr5:149256899:G:C	rs73275754	G	C	G	Sox1.mouse_HMG_2	12	1	-	5.708137356156718	-1.1923112943096448	ATGCATTACATTCTC
chr5	149367728	149367729	chr5:149367729:C:T	rs767945775	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	149394173	149394174	chr5:149394174:G:C	rs6874589	G	C	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	149472532	149472533	chr5:149472533:G:T	rs62377964	G	T	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	149473600	149473601	chr5:149473601:G:C	rs17654062	G	C	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr5	149487180	149487181	chr5:149487181:C:T	rs78063110	C	T	C	Sox1.mouse_HMG_2	1	1	+	3.0018339115254955	7.64582621901873	CCGAGTTCCATTCAG
chr5	149656263	149656264	chr5:149656264:A:G	rs55700502	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	150001855	150001856	chr5:150001856:A:T	rs116251868	A	T	A	Sox1.mouse_HMG_2	9	1	+	3.4669778055078573	-3.4417769738073614	CTATATGCCATTCAT
chr5	150046339	150046340	chr5:150046340:C:T	rs6894582	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr5	150067820	150067821	chr5:150067821:C:T	rs10040529	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr5	150129547	150129548	chr5:150129548:C:T	rs1864971	C	T	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	150339369	150339370	chr5:150339370:G:C	rs146659109	G	C	G	Sox1.mouse_HMG_2	6	1	-	4.137707796882926	7.049945377702653	AAGACTCTCATTCAG
chr5	150402856	150402857	chr5:150402857:C:A	rs7722480	C	A	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr5	150653907	150653908	chr5:150653908:C:T	rs33412	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	150787587	150787588	chr5:150787588:T:G	rs1144651	T	G	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	151105225	151105226	chr5:151105226:C:T	rs884520	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	151336196	151336197	chr5:151336197:T:C	rs6579853	T	C	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	151508363	151508364	chr5:151508364:A:G	rs11750722	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.98649798720797	-1.9222567921072506	ACGAATAGCATTCCC
chr5	151585215	151585216	chr5:151585216:G:A	rs7736409	G	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr5	151741855	151741856	chr5:151741856:G:A	rs150056963	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr5	151771656	151771657	chr5:151771657:C:T	rs377386285	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr5	151771669	151771670	chr5:151771670:C:A	rs1288736937	C	A	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr5	151771695	151771696	chr5:151771696:C:T	rs2915875	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	152097467	152097468	chr5:152097468:T:C	rs440768	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	152394132	152394133	chr5:152394133:A:T	rs17545367	A	T	T	Sox1.mouse_HMG_2	10	1	-	4.894835566678453	-1.9531060116018268	TTGACTACAATTCTC
chr5	152397742	152397743	chr5:152397743:A:G	rs72791442	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	152397755	152397756	chr5:152397756:T:C	rs10476784	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	152579864	152579865	chr5:152579865:A:C	rs2961769	A	C	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	153005713	153005714	chr5:153005714:C:G	rs4958333	C	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	153211565	153211566	chr5:153211566:A:G	rs17581550	A	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	153438050	153438051	chr5:153438051:A:C	rs1600143	A	C	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	153524002	153524003	chr5:153524003:A:G	rs572798	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	153555756	153555757	chr5:153555757:A:G	rs62384367	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	153658601	153658602	chr5:153658602:C:T	rs78546986	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	153906261	153906262	chr5:153906262:A:C	rs1903441	A	C	C	Sox1.mouse_HMG_2	14	1	+	4.090365145032913	4.533462166992863	ATGAATCTCATGCAA
chr5	153969698	153969699	chr5:153969699:C:T	rs17617521	C	T	C	Sox1.mouse_HMG_2	7	1	+	7.207479801397965	6.746535347690858	GTGAATACAATTCTC
chr5	153969714	153969715	chr5:153969715:A:T	rs7715318	A	T	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	153974390	153974391	chr5:153974391:A:G	rs17115467	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.128512450565402	-2.692900318594673	CTGAATAACATGCGC
chr5	153974410	153974411	chr5:153974411:C:T	rs35911163	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr5	154078073	154078074	chr5:154078074:A:G	rs942903664	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.813179700792088	0.9044249214768664	CAGACTAGCATTCAA
chr5	154239533	154239534	chr5:154239534:A:G	rs6580063	A	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	154260787	154260788	chr5:154260788:C:T	rs2434531	C	T	T	Sox1.mouse_HMG_2	7	1	-	4.992500874713989	5.693555694255064	CTAAATAGTATTCAC
chr5	154446964	154446965	chr5:154446965:C:T	rs543931551	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	154460102	154460103	chr5:154460103:G:A	rs374290336	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	154474838	154474839	chr5:154474839:G:T	rs79656569	G	T	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	154493731	154493732	chr5:154493732:A:G	rs10477101	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr5	154593260	154593261	chr5:154593261:C:A	rs13184629	C	A	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	154917097	154917098	chr5:154917098:G:A	rs116821443	G	A	G	Sox1.mouse_HMG_2	14	1	-	3.404773831829344	4.27938617455208	GTGAATACCATTAGC
chr5	155107329	155107330	chr5:155107330:C:G	chr5:155107330:C:G	C	G	c	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr5	155563398	155563399	chr5:155563399:T:C	rs77394709	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	156138055	156138056	chr5:156138056:G:C	rs79048803	G	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr5	156590074	156590075	chr5:156590075:A:G	rs3797574	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr5	156590078	156590079	chr5:156590079:A:G	rs157292	A	G	G	Sox1.mouse_HMG_2	14	1	-	5.653402081217982	4.778789738495246	AACAATGCCATTCAT
chr5	156892705	156892706	chr5:156892706:C:T	rs17571131	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	157189003	157189004	chr5:157189004:A:T	rs163424	A	T	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	157466413	157466414	chr5:157466414:G:A	rs55635824	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr5	157466447	157466448	chr5:157466448:C:T	rs185168336	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	157499433	157499434	chr5:157499434:T:C	rs13361953	T	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	157500999	157501000	chr5:157501000:C:T	rs56168343	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	157675114	157675115	chr5:157675115:C:T	rs142164982	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	157676098	157676099	chr5:157676099:A:G	rs7729788	A	G	G	Sox1.mouse_HMG_2	4	1	+	4.194654334636853	-2.62675843452322	CAGAATTTCATTCCT
chr5	157688519	157688520	chr5:157688520:A:C	rs11743418	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	157688545	157688546	chr5:157688546:C:T	rs115213486	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	157688548	157688549	chr5:157688549:G:A	rs13359588	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr5	157719379	157719380	chr5:157719380:C:T	rs34506990	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.3548654356159577	-1.317721668052297	AGGCATGACATTCAC
chr5	157740308	157740309	chr5:157740309:C:G	rs6892723	C	G	G	Sox1.mouse_HMG_2	8	1	+	5.6143233914103226	-0.10421127112538606	TTGAAAAACATTCTC
chr5	157807506	157807507	chr5:157807507:A:G	rs3777055	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr5	157864236	157864237	chr5:157864237:G:A	rs912871952	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	157917897	157917898	chr5:157917898:C:T	rs2448409	C	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr5	158050584	158050585	chr5:158050585:A:G	rs7736318	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	158224683	158224684	chr5:158224684:C:T	rs62385093	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	158288357	158288358	chr5:158288358:A:G	rs74451510	A	G	G	Sox1.mouse_HMG_2	4	1	+	4.615553754479304	-2.2058590146807666	ATGAAAAAAATTCAG
chr5	158415730	158415731	chr5:158415731:C:T	rs72804565	C	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	158522442	158522443	chr5:158522443:A:C	rs2419654	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	158607154	158607155	chr5:158607155:C:T	rs60386395	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	158873117	158873118	chr5:158873118:C:T	rs10866709	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr5	158877231	158877232	chr5:158877232:C:G	rs542562058	C	G	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	159300547	159300548	chr5:159300548:T:C	rs1433047	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	159580769	159580770	chr5:159580770:C:A	rs10065906	C	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	160045401	160045402	chr5:160045402:T:C	rs77655898	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr5	160507127	160507128	chr5:160507128:C:T	rs4921295	C	T	C	Sox1.mouse_HMG_2	1	1	-	5.061592195523914	5.366063374602489	CGGAATAACACTCAT
chr5	160540236	160540237	chr5:160540237:G:A	rs12187077	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	160731409	160731410	chr5:160731410:T:C	rs2915802	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	161086381	161086382	chr5:161086382:G:A	rs748972173	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	161676135	161676136	chr5:161676136:A:G	rs6893149	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	162966507	162966508	chr5:162966508:G:A	rs140827196	G	A	.	Sox1.mouse_HMG_2	0	1	-	4.042073458116293	3.7761302643468584	CTGAATGCCAGCCAA
chr5	163532548	163532549	chr5:163532549:G:A	rs6887453	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	163632419	163632420	chr5:163632420:A:G	rs6863209	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr5	163705632	163705633	chr5:163705633:T:C	rs693308	T	C	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr5	163890574	163890575	chr5:163890575:G:A	rs62390885	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr5	163977287	163977288	chr5:163977288:C:A	rs1363493	C	A	A	Sox1.mouse_HMG_2	8	1	+	10.500820090734207	5.651323275222109	AAGACTAACATTCAT
chr5	164052817	164052818	chr5:164052818:A:G	rs111956543	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr5	164070299	164070300	chr5:164070300:G:A	rs978114	G	A	A	Sox1.mouse_HMG_2	2	1	+	4.0633308190907655	-0.5820717139254502	GTGTATAGAATTCAT
chr5	164093555	164093556	chr5:164093556:A:C	rs72814085	A	C	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr5	164357301	164357302	chr5:164357302:T:G	rs185416655	T	G	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	165035855	165035856	chr5:165035856:A:C	rs11949154	A	C	A	Sox1.mouse_HMG_2	4	1	+	8.45940388735506	6.077342819488139	ATGCATTACATTCAA
chr5	165901415	165901416	chr5:165901416:T:C	rs1982325	T	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr5	166493792	166493793	chr5:166493793:G:C	rs76893889	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	166504929	166504930	chr5:166504930:A:G	rs2964295	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	166540530	166540531	chr5:166540531:G:T	rs79980213	G	T	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	166562485	166562486	chr5:166562486:A:G	rs141840968	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	167219806	167219807	chr5:167219807:A:G	rs10058890	A	G	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	167435412	167435413	chr5:167435413:C:T	rs28463574	C	T	T	Sox1.mouse_HMG_2	4	1	+	4.930972925795079	0.4916212245019279	TTGACTCTCATTCTC
chr5	167435440	167435441	chr5:167435441:T:C	rs143668579	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	167588099	167588100	chr5:167588100:C:T	rs175874	C	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr5	167678626	167678627	chr5:167678627:T:G	rs138037665	T	G	T	Sox1.mouse_HMG_2	13	1	+	5.307507806579448	3.5557536719650917	ATGAATCACATTTTT
chr5	167805230	167805231	chr5:167805231:A:T	rs57674698	A	T	G	Sox1.mouse_HMG_2	13	1	+	5.011781893101711	1.8174183399434183	CTGCCTTCCATTCAA
chr5	167945662	167945663	chr5:167945663:G:A	rs7724997	G	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr5	168109710	168109711	chr5:168109711:G:C	rs10043220	G	C	G	Sox1.mouse_HMG_2	11	1	+	2.6123455528330486	2.6123455528330486	ATGACTCCCATGCAC
chr5	168317388	168317389	chr5:168317389:C:T	rs56243088	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	168598319	168598320	chr5:168598320:C:T	rs158575	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr5	168766188	168766189	chr5:168766189:A:G	rs17070438	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr5	169083446	169083447	chr5:169083447:C:A	rs2668063	C	A	c	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr5	169221662	169221663	chr5:169221663:T:G	rs11134563	T	G	G	Sox1.mouse_HMG_2	5	1	+	4.53669301520681	-2.3720617641084103	GTGACTTGCCTTCAG
chr5	169301344	169301345	chr5:169301345:G:A	rs182914012	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	169422238	169422239	chr5:169422239:C:T	rs34559882	C	T	C	Sox1.mouse_HMG_2	12	1	+	8.424891510494184	3.7523044068259295	GGGAATACCAGTCAT
chr5	169467107	169467108	chr5:169467108:C:T	rs7727768	C	T	T	Sox1.mouse_HMG_2	7	1	-	5.27166133422185	5.972716153762925	ATAAAGAGCATTCAT
chr5	169672393	169672394	chr5:169672394:A:G	rs7713640	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr5	169696568	169696569	chr5:169696569:T:C	rs10516068	T	C	T	Sox1.mouse_HMG_2	13	1	-	3.7093639074639206	-1.2367537803087276	ATGAAAAACATACAT
chr5	169742825	169742826	chr5:169742826:C:G	rs143655922	C	G	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr5	169809471	169809472	chr5:169809472:T:C	rs9885351	T	C	T	Sox1.mouse_HMG_2	10	1	+	3.0323618182680185	-3.8155797600122634	CTCAATTCCATTCCC
chr5	170153535	170153536	chr5:170153536:C:T	rs1544757	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr5	170176777	170176778	chr5:170176778:A:G	rs10065762	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr5	170466914	170466915	chr5:170466915:T:A	rs11134629	T	A	T	Sox1.mouse_HMG_2	13	1	-	9.00682608781772	5.812462534659427	ATGATTTTCATTCAT
chr5	170584737	170584738	chr5:170584738:C:T	rs75050061	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr5	170597289	170597290	chr5:170597290:A:G	rs11739238	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	170597312	170597313	chr5:170597313:C:T	rs79326418	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr5	170750238	170750239	chr5:170750239:A:T	rs147768444	A	T	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr5	170753025	170753026	chr5:170753026:A:C	rs67212584	A	C	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	170818474	170818475	chr5:170818475:G:A	rs9986294	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.071528462287248	1.398941358618993	CTGACTCTCATTCTT
chr5	171270636	171270637	chr5:171270637:A:G	rs144699677	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.27166133422185	-1.6370934450933703	ATACATAGCATTCAT
chr5	171394777	171394778	chr5:171394778:T:C	rs59975074	T	C	T	Sox1.mouse_HMG_2	10	1	+	8.11969257272005	1.2717509944397665	TTTAATAGCATTCAC
chr5	171695044	171695045	chr5:171695045:C:T	rs80011093	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	171709469	171709470	chr5:171709470:G:C	rs79304098	G	C	G	Sox1.mouse_HMG_2	14	1	+	5.413057842457935	5.691513616522937	ATGAATATCTTTCTG
chr5	171710159	171710160	chr5:171710160:A:G	rs58161933	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	171915199	171915200	chr5:171915200:T:C	rs839292	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.09549045563194	-1.5485018518612927	ATGGATAGCAGTCTC
chr5	172038371	172038372	chr5:172038372:C:T	rs77094044	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr5	172137331	172137332	chr5:172137332:C:T	rs7704787	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.195160199200303	-0.4502423338159146	TTGAATATGATTCGC
chr5	172185244	172185245	chr5:172185245:A:G	rs72845183	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	172281055	172281056	chr5:172281056:G:T	rs13360882	G	T	G	Sox1.mouse_HMG_2	12	1	-	4.270569049514286	-2.6298796009520777	AATAATTACATTCAC
chr5	172328677	172328678	chr5:172328678:T:C	rs3925650	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr5	172403214	172403215	chr5:172403215:A:G	rs79168198	A	G	A	Sox1.mouse_HMG_2	6	1	-	4.637375359110031	1.1259657911630596	AGGAATTACAGTCTG
chr5	172501126	172501127	chr5:172501127:G:A	rs111465686	G	A	G	Sox1.mouse_HMG_2	1	1	+	6.774875190212176	7.079346369290752	CGGACTAACAGTCAT
chr5	172584343	172584344	chr5:172584344:C:T	rs6864946	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	172584355	172584356	chr5:172584356:A:G	rs57073016	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr5	172692715	172692716	chr5:172692716:T:C	rs7733395	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	173323116	173323117	chr5:173323117:C:A	rs2277949	C	A	C	Sox1.mouse_HMG_2	10	1	-	4.042073458116291	6.794670973841388	CTGAATGCCTGTCAA
chr5	173354397	173354398	chr5:173354398:A:G	rs7717113	A	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr5	173418683	173418684	chr5:173418684:G:A	rs72820040	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr5	173469126	173469127	chr5:173469127:C:T	rs17075987	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr5	173488863	173488864	chr5:173488864:C:T	rs138752933	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr5	173677614	173677615	chr5:173677615:G:C	rs10085132	G	C	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr5	173776398	173776399	chr5:173776399:G:A	rs111639555	G	A	g	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr5	173807443	173807444	chr5:173807444:G:A	rs2245535	G	A	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	173880939	173880940	chr5:173880940:G:A	rs17076660	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	174135298	174135299	chr5:174135299:A:C	rs2546995	A	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr5	174324385	174324386	chr5:174324386:G:C	rs149539148	G	C	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr5	174355168	174355169	chr5:174355169:A:G	rs1863954	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	174459149	174459150	chr5:174459150:C:G	rs354974	C	G	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr5	174551440	174551441	chr5:174551441:A:G	rs11739925	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr5	174573050	174573051	chr5:174573051:G:A	rs72822738	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr5	174730968	174730969	chr5:174730969:G:C	rs4647950	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr5	174993062	174993063	chr5:174993063:T:C	rs10061567	T	C	t	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr5	175123290	175123291	chr5:175123291:T:C	rs3105418	T	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr5	175154103	175154104	chr5:175154104:G:A	rs17807505	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	175316510	175316511	chr5:175316511:G:T	rs1902602	G	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr5	175347088	175347089	chr5:175347089:C:A	chr5:175347089:C:A	C	A	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	175411276	175411277	chr5:175411277:A:G	rs10476155	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr5	175471850	175471851	chr5:175471851:C:A	rs2960271	C	A	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr5	175471879	175471880	chr5:175471880:G:A	rs10476158	G	A	G	Sox1.mouse_HMG_2	9	1	+	4.380118660372709	11.28887343968793	GTGACTTTCGTTCAG
chr5	175471881	175471882	chr5:175471882:T:C	rs10476159	T	C	C	Sox1.mouse_HMG_2	11	1	+	4.380118660372709	-2.528636118942511	GTGACTTTCGTTCAG
chr5	175495093	175495094	chr5:175495094:T:C	rs7702420	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	175936128	175936129	chr5:175936129:T:C	rs62389151	T	C	T	Sox1.mouse_HMG_2	3	1	-	8.980747798416216	2.0719930191009936	CTGAATTAGATTCAA
chr5	176369563	176369564	chr5:176369564:T:C	rs66997553	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr5	176701098	176701099	chr5:176701099:C:A	rs12654383	C	A	C	Sox1.mouse_HMG_2	12	1	+	3.326076288289797	-3.5743723621765673	ATGACCTACATTCTC
chr5	176744014	176744015	chr5:176744015:C:T	rs116593975	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	177242028	177242029	chr5:177242029:A:G	rs918459	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr5	177795615	177795616	chr5:177795616:T:C	rs62397663	T	C	c	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr5	177832325	177832326	chr5:177832326:T:C	rs1221191576	T	C	t	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr5	178186834	178186835	chr5:178186835:C:T	rs2961664	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr5	178281501	178281502	chr5:178281502:C:T	rs2973766	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr5	178427602	178427603	chr5:178427603:T:C	rs10063674	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.70149765215304	2.0575053446598046	CTGAATAATATTCTA
chr5	178521075	178521076	chr5:178521076:T:A	rs6600940	T	A	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr5	178528524	178528525	chr5:178528525:G:C	rs151056939	G	C	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr5	178539214	178539215	chr5:178539215:C:T	rs73344421	C	T	c	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr5	178541838	178541839	chr5:178541839:A:G	rs4976789	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr5	178691921	178691922	chr5:178691922:G:T	rs59480718	G	T	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr5	178899517	178899518	chr5:178899518:G:T	rs76797775	G	T	g	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr5	179263446	179263447	chr5:179263447:C:T	chr5:179263447:C:T	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr5	179325807	179325808	chr5:179325808:T:C	rs112153047	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr5	179544835	179544836	chr5:179544836:T:A	rs6601048	T	A	a	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr5	179560910	179560911	chr5:179560911:A:G	rs79572791	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr5	179859096	179859097	chr5:179859097:C:G	rs399299	C	G	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr5	180020527	180020528	chr5:180020528:C:T	rs74496447	C	T	C	Sox1.mouse_HMG_2	14	1	-	5.74288174985615	5.5782405019612025	GTGACTACCACTCAG
chr5	180105943	180105944	chr5:180105944:T:C	rs6894296	T	C	N	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr5	180181117	180181118	chr5:180181118:T:C	rs114168758	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr5	180243527	180243528	chr5:180243528:C:T	rs7445806	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr5	180400141	180400142	chr5:180400142:T:C	rs1360587540	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr5	180471405	180471406	chr5:180471406:G:T	rs115251360	G	T	G	Sox1.mouse_HMG_2	7	1	-	2.998887866243525	3.395572586911594	TTGACTACCAGCCAG
chr5	180688816	180688817	chr5:180688817:C:T	rs11249743	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr5	180697197	180697198	chr5:180697198:T:C	rs7702228	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr5	181154028	181154029	chr5:181154029:C:A	rs6865627	C	A	c	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr5	181154028	181154029	chr5:181154029:C:T	chr5:181154029:C:T	C	T	c	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	221514	221515	chr6:221515:C:T	rs12195328	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	224310	224311	chr6:224311:T:A	rs769670371	T	A	T	Sox1.mouse_HMG_2	11	1	+	3.4201373091948986	-3.488617470120322	GAGAAGACCATTCAG
chr6	232289	232290	chr6:232290:C:T	rs7765514	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	237214	237215	chr6:237215:A:G	rs4959611	A	G	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	518858	518859	chr6:518859:C:T	rs2493016	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	599443	599444	chr6:599444:G:C	rs74687163	G	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	635319	635320	chr6:635320:C:A	rs9405871	C	A	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	681197	681198	chr6:681198:T:C	rs9504741	T	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	740914	740915	chr6:740915:C:A	rs2788233	C	A	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	951143	951144	chr6:951144:C:T	rs1336302	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	995829	995830	chr6:995830:G:A	rs191809059	G	A	G	Sox1.mouse_HMG_2	1	1	+	4.180301820105571	4.4847729991841465	CGGAATATGATTCAG
chr6	1025007	1025008	chr6:1025008:T:G	rs845878	T	G	t	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	1025034	1025035	chr6:1025035:T:C	rs142694053	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	1026054	1026055	chr6:1026055:C:G	rs845875	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	1124122	1124123	chr6:1124123:A:G	rs6918590	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	1278429	1278430	chr6:1278430:T:C	rs74888482	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	1477445	1477446	chr6:1477446:T:A	rs4435986	T	A	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	1600790	1600791	chr6:1600791:G:T	rs139338231	G	T	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	1641282	1641283	chr6:1641283:T:C	rs1373058073	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	1765571	1765572	chr6:1765572:T:A	rs1076703	T	A	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	1765572	1765573	chr6:1765573:C:A	rs742535	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	2118228	2118229	chr6:2118229:T:C	rs114133038	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.4563972429083996	-3.3650155262516726	ATGCATTACATTCCT
chr6	2204039	2204040	chr6:2204040:A:G	rs234954	A	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	2237102	2237103	chr6:2237103:G:A	rs115547659	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	2507157	2507158	chr6:2507158:T:C	rs879097	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	2626965	2626966	chr6:2626966:A:G	rs9378721	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.761524801770701	0.8154071139980529	ATGAATTCCAGTGAC
chr6	2644395	2644396	chr6:2644396:C:T	rs2170614	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr6	2718894	2718895	chr6:2718895:T:C	rs17291915	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.099514036563172	-1.8092407427520476	AAGAAAAACATTCAC
chr6	2743439	2743440	chr6:2743440:T:C	rs17135660	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	2744059	2744060	chr6:2744060:T:C	rs7743098	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr6	2990830	2990831	chr6:2990831:T:C	rs530618291	T	C	t	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	2999607	2999608	chr6:2999608:C:G	rs2071000	C	G	c	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	3019419	3019420	chr6:3019420:T:C	rs4149370	T	C	C	Sox1.mouse_HMG_2	13	1	-	3.4881439168193262	-1.457973770953322	TTACATACCATTCAG
chr6	3068112	3068113	chr6:3068113:A:G	rs143307760	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr6	3104636	3104637	chr6:3104637:G:A	rs17548280	G	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	3194354	3194355	chr6:3194355:C:G	rs9503441	C	G	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	3353474	3353475	chr6:3353475:C:T	rs7766646	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	3363965	3363966	chr6:3363966:T:C	rs77794278	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	3743380	3743381	chr6:3743381:C:T	rs144414546	C	T	C	Sox1.mouse_HMG_2	8	1	+	7.367878394668495	1.723451704286509	ATAAATTACATTTAT
chr6	3780628	3780629	chr6:3780629:C:G	rs6918281	C	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	3787023	3787024	chr6:3787024:G:A	rs9503740	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	3804820	3804821	chr6:3804821:A:G	rs6597000	A	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	3839309	3839310	chr6:3839310:T:C	rs6927199	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	4173418	4173419	chr6:4173419:T:A	rs671199	T	A	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	4481069	4481070	chr6:4481070:C:T	rs1011087	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	4481095	4481096	chr6:4481096:G:C	rs1571630	G	C	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	4484079	4484080	chr6:4484080:A:G	rs1009604	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	4586137	4586138	chr6:4586138:T:C	rs7757235	T	C	C	Sox1.mouse_HMG_2	12	1	+	6.222298259008846	10.894885362677103	CTAAATAACATTTAA
chr6	4600159	4600160	chr6:4600160:G:A	rs9328262	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	4600160	4600161	chr6:4600161:T:C	rs142487494	T	C	T	Sox1.mouse_HMG_2	0	1	+	5.918923054788859	6.184866248558292	TTGAATCACATTCCT
chr6	4962942	4962943	chr6:4962943:C:A	rs1246939	C	A	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr6	5090123	5090124	chr6:5090124:G:A	rs2773330	G	A	G	Sox1.mouse_HMG_2	5	1	+	3.247099962019097	3.247099962019097	GTGAAGGTCATTCTC
chr6	5098409	5098410	chr6:5098410:C:T	rs389707	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	5098419	5098420	chr6:5098420:C:T	rs389691	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	5320388	5320389	chr6:5320389:A:G	rs708036	A	G	G	Sox1.mouse_HMG_2	5	1	-	7.242286175987834	0.333531396672614	GTGAATCTCAGTCAA
chr6	5361505	5361506	chr6:5361506:G:A	rs374028393	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	5395051	5395052	chr6:5395052:T:C	rs2032989	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	5398598	5398599	chr6:5398599:G:A	rs371495753	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	5442819	5442820	chr6:5442820:A:G	rs200202	A	G	a	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	5583901	5583902	chr6:5583902:T:G	rs78815639	T	G	T	Sox1.mouse_HMG_2	7	1	-	5.112635567303037	4.715950846634968	ATGCATCACATTCAG
chr6	5583919	5583920	chr6:5583920:C:T	rs6903542	C	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	5622559	5622560	chr6:5622560:T:C	rs9392702	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	5785555	5785556	chr6:5785556:C:T	rs1108304	C	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	5863109	5863110	chr6:5863110:G:A	rs748903	G	A	G	Sox1.mouse_HMG_2	0	1	+	4.463947936881021	5.468184169516223	GTAACTGCCATTCTT
chr6	5934860	5934861	chr6:5934861:C:G	rs72825798	C	G	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	5963498	5963499	chr6:5963499:C:T	rs4960149	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	5967796	5967797	chr6:5967797:C:A	rs6905724	C	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	6226150	6226151	chr6:6226151:C:T	rs1742926	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	6314659	6314660	chr6:6314660:T:C	rs3024339	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	6357251	6357252	chr6:6357252:G:C	rs6934186	G	C	C	Sox1.mouse_HMG_2	14	1	-	6.362431899973423	6.08397612590842	ATAAATAATATTCAC
chr6	6393339	6393340	chr6:6393340:G:A	rs17142157	G	A	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	6589474	6589475	chr6:6589475:C:T	rs142269963	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	6599352	6599353	chr6:6599353:G:C	rs115740248	G	C	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	6599354	6599355	chr6:6599355:A:G	rs3789765	A	G	g	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	6742915	6742916	chr6:6742916:T:G	rs1294421	T	G	G	Sox1.mouse_HMG_2	3	1	-	9.954215867229838	3.045461087914619	ATGAATAGGATTCAG
chr6	6931484	6931485	chr6:6931485:C:T	rs34009325	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	7189624	7189625	chr6:7189625:G:A	rs59431963	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	7217283	7217284	chr6:7217284:C:T	rs6931262	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	7496443	7496444	chr6:7496444:T:G	rs7767346	T	G	T	Sox1.mouse_HMG_2	4	1	-	4.582656758448938	2.200595690582017	GTGCATGCCATTCTT
chr6	7496450	7496451	chr6:7496451:G:A	rs7742396	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	7496458	7496459	chr6:7496459:G:A	rs2757603	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	7578585	7578586	chr6:7578586:T:G	rs2806229	T	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	7578589	7578590	chr6:7578590:G:A	rs2842691	G	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	7644609	7644610	chr6:7644610:A:T	rs9392167	A	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	7812800	7812801	chr6:7812801:T:A	rs6921045	T	A	T	Sox1.mouse_HMG_2	14	1	+	4.729190420717933	3.411481056035247	GTGAATTTCATTATT
chr6	7812818	7812819	chr6:7812819:G:A	rs6936190	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	7846996	7846997	chr6:7846997:G:A	rs56377413	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.482579532605813	1.809992428937558	TTAAATGCCAGTCAC
chr6	7953755	7953756	chr6:7953756:C:T	rs6597289	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	8029727	8029728	chr6:8029728:G:A	rs2744007	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	8070451	8070452	chr6:8070452:G:T	rs73368485	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	8086266	8086267	chr6:8086267:C:T	rs12199241	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	8170676	8170677	chr6:8170677:A:G	rs77189302	A	G	a	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr6	8174768	8174769	chr6:8174769:A:G	rs9505376	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	8239583	8239584	chr6:8239584:T:C	rs113465798	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	8344677	8344678	chr6:8344678:C:G	rs6933719	C	G	G	Sox1.mouse_HMG_2	12	1	+	4.1283732191930245	-2.7720754312733393	CAGAATTCCACTCAT
chr6	8499645	8499646	chr6:8499646:C:A	rs77107642	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	8499674	8499675	chr6:8499675:C:G	rs148596699	C	G	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	8504515	8504516	chr6:8504516:A:G	rs6597333	A	G	G	Sox1.mouse_HMG_2	10	1	-	8.796174364273046	1.9482327859927655	CTGAATAACATGCAG
chr6	8504545	8504546	chr6:8504546:C:T	rs6597334	C	T	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	8545870	8545871	chr6:8545871:T:C	rs330109	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	8550302	8550303	chr6:8550303:G:T	rs9505478	G	T	G	Sox1.mouse_HMG_2	14	1	+	8.535449488655097	9.688517605442835	AAGAATAACATTCTG
chr6	8589682	8589683	chr6:8589683:C:G	rs980083	C	G	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	9256923	9256924	chr6:9256924:A:G	rs9368221	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	9948816	9948817	chr6:9948817:G:T	rs12529183	G	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	10070461	10070462	chr6:10070462:G:C	rs9383386	G	C	G	Sox1.mouse_HMG_2	0	1	+	4.09527780392797	4.430637830844813	GAGAATAACATCCAC
chr6	10195466	10195467	chr6:10195467:A:G	rs2327253	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	10337831	10337832	chr6:10337832:G:A	rs182140625	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	10549345	10549346	chr6:10549346:A:G	rs77186463	A	G	A	Sox1.mouse_HMG_2	6	1	+	4.910992696891866	3.4708152750232273	ATGAATATATTTCAT
chr6	10555055	10555056	chr6:10555056:T:C	rs3756948	T	C	T	Sox1.mouse_HMG_2	14	1	+	10.896566375838459	10.021954033115724	ATCAATTCCATTCAT
chr6	10556043	10556044	chr6:10556044:G:A	rs886060902	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	10583092	10583093	chr6:10583093:T:A	chr6:10583093:T:A	T	A	T	Sox1.mouse_HMG_2	3	1	-	3.3705133050047786	-3.53824147431044	CCCAATGTCATTCAG
chr6	10603423	10603424	chr6:10603424:A:G	rs11963593	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	10725324	10725325	chr6:10725325:G:A	rs192134678	G	A	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	11173500	11173501	chr6:11173501:G:A	rs79153222	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr6	11202791	11202792	chr6:11202792:T:C	rs9295813	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	11205201	11205202	chr6:11205202:C:A	rs546724848	C	A	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	11224971	11224972	chr6:11224972:A:G	rs116725549	A	G	A	Sox1.mouse_HMG_2	7	1	+	3.630741818519513	2.9296869989784353	ATGAATGACATATAC
chr6	11252197	11252198	chr6:11252198:A:G	rs116002029	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	11311021	11311022	chr6:11311022:T:C	rs6917014	T	C	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr6	11321385	11321386	chr6:11321386:C:T	rs2066919	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	11321416	11321417	chr6:11321417:G:A	rs4711251	G	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	11359591	11359592	chr6:11359592:A:G	rs9357126	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	11394237	11394238	chr6:11394238:T:A	rs79406247	T	A	T	Sox1.mouse_HMG_2	1	1	+	5.999690464706965	1.3556981572137312	TTAAATAACAGTCTT
chr6	11447213	11447214	chr6:11447214:T:A	rs11969639	T	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	11526136	11526137	chr6:11526137:G:C	rs570714	G	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	11565022	11565023	chr6:11565023:G:T	rs12204597	G	T	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	11590731	11590732	chr6:11590732:G:A	chr6:11590732:G:A	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	11615328	11615329	chr6:11615329:C:G	chr6:11615329:C:G	C	G	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	11814282	11814283	chr6:11814283:G:T	rs997137	G	T	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	11837290	11837291	chr6:11837291:T:G	rs4711435	T	G	G	Sox1.mouse_HMG_2	13	1	-	5.768621871267043	-0.5520941378623049	ATGAAAAAAATTCAT
chr6	11852938	11852939	chr6:11852939:G:A	rs147221197	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	11868309	11868310	chr6:11868310:C:G	rs6918454	C	G	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	11917836	11917837	chr6:11917837:G:A	rs147588741	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.2249622795594646	-1.4476248241087908	CTCAATGGCATTCGG
chr6	12001023	12001024	chr6:12001024:A:G	rs35209346	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	12051250	12051251	chr6:12051251:A:C	rs9349070	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	12113614	12113615	chr6:12113615:G:A	rs76357537	G	A	G	Sox1.mouse_HMG_2	10	1	+	8.463373666443571	4.368029603888387	GTGAATTCCAGTCTC
chr6	12172833	12172834	chr6:12172834:A:G	rs9380878	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	12391740	12391741	chr6:12391741:G:A	rs994632	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	12420704	12420705	chr6:12420705:C:T	rs1329138253	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr6	12468512	12468513	chr6:12468513:T:C	rs12530036	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	12544315	12544316	chr6:12544316:G:A	rs17616631	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	12558188	12558189	chr6:12558189:A:G	rs2327567	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	12622299	12622300	chr6:12622300:T:C	rs12201148	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	12785187	12785188	chr6:12785188:A:T	rs138210367	A	T	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	13089937	13089938	chr6:13089938:G:A	rs6918053	G	A	A	Sox1.mouse_HMG_2	12	1	-	3.5770889536390644	-1.0954981500291898	CTAAATGACATTCCC
chr6	13312237	13312238	chr6:13312238:G:A	rs2439544	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr6	13330752	13330753	chr6:13330753:A:G	rs1512412	A	G	G	Sox1.mouse_HMG_2	11	1	-	2.9658665657194745	-3.942888213595745	GTGAACAGCAGTCTT
chr6	13528805	13528806	chr6:13528806:A:T	rs6458907	A	T	A	Sox1.mouse_HMG_2	5	1	-	7.884097975038629	0.9753431957234086	TTGAATTACATTTTT
chr6	13575407	13575408	chr6:13575408:G:A	rs931433767	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	13575412	13575413	chr6:13575413:C:T	chr6:13575413:C:T	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr6	13575449	13575450	chr6:13575450:G:A	rs2804926	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	14025267	14025268	chr6:14025268:G:A	rs534340448	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	14039333	14039334	chr6:14039334:A:G	rs9476469	A	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	14290857	14290858	chr6:14290858:T:C	rs2274822	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	14742566	14742567	chr6:14742567:G:A	rs2500076	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	14874141	14874142	chr6:14874142:A:G	rs62390320	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	14877828	14877829	chr6:14877829:T:C	rs1811899	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	14943413	14943414	chr6:14943414:A:T	rs4574648	A	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	14943417	14943418	chr6:14943418:T:C	rs4299834	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	14999347	14999348	chr6:14999348:C:T	rs1259063	C	T	t	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	15208212	15208213	chr6:15208213:T:G	rs71551032	T	G	G	Sox1.mouse_HMG_2	9	1	-	4.9603972252783715	-1.948357554036849	ATGAATAAGACTCAT
chr6	15366228	15366229	chr6:15366229:G:T	rs80257052	G	T	G	Sox1.mouse_HMG_2	7	1	-	4.10866944057418	4.505354161242249	ATGAATGCCTTTTAT
chr6	15497362	15497363	chr6:15497363:T:C	rs58121172	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	15691694	15691695	chr6:15691695:A:G	rs16876794	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	15767897	15767898	chr6:15767898:A:G	rs220890	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	15815962	15815963	chr6:15815963:A:G	rs11751408	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	15840383	15840384	chr6:15840384:C:T	rs41465249	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	15859022	15859023	chr6:15859023:G:A	rs9476962	G	A	A	Sox1.mouse_HMG_2	14	1	-	4.48491404621389	5.359526388936627	GGGAATTGCATTTAC
chr6	15893795	15893796	chr6:15893796:C:T	rs726966	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	15957885	15957886	chr6:15957886:A:C	rs9358075	A	C	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	15998174	15998175	chr6:15998175:T:A	rs75061917	T	A	T	Sox1.mouse_HMG_2	10	1	+	3.955362195062147	-2.8925793832181337	AAGAAAAGCATTCAA
chr6	16004972	16004973	chr6:16004973:G:A	rs9477012	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr6	16036803	16036804	chr6:16036804:T:A	rs4716030	T	A	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	16217230	16217231	chr6:16217231:A:G	rs6900638	A	G	A	Sox1.mouse_HMG_2	6	1	+	2.625100934223108	1.184923512354469	GTGACTAGCAGACAG
chr6	16217235	16217236	chr6:16217236:A:G	rs4559082	A	G	G	Sox1.mouse_HMG_2	11	1	+	2.625100934223108	2.625100934223108	GTGACTAGCAGACAG
chr6	16319388	16319389	chr6:16319389:C:A	rs179995	C	A	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	16370069	16370070	chr6:16370070:C:T	rs939284657	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.615912006974878	-0.029490526041337922	TTGAACGACAGTCAC
chr6	16381612	16381613	chr6:16381613:G:T	rs881405	G	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	16388636	16388637	chr6:16388637:A:G	rs16877998	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	16406191	16406192	chr6:16406192:A:T	rs432986	A	T	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	16472790	16472791	chr6:16472791:A:G	chr6:16472791:A:G	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	16683698	16683699	chr6:16683699:T:C	rs1570488	T	C	C	Sox1.mouse_HMG_2	6	1	+	3.933536214040907	0.42212664609393646	TTGAACTCCATTCTA
chr6	16724149	16724150	chr6:16724150:C:T	rs145287942	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr6	16729507	16729508	chr6:16729508:G:A	rs1150635	G	A	g	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr6	16825151	16825152	chr6:16825152:A:G	rs72827866	A	G	A	Sox1.mouse_HMG_2	0	1	+	5.248416594562987	4.2441803619277865	ATGAATATCTTTCTA
chr6	16825152	16825153	chr6:16825153:T:C	rs114601748	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.248416594562987	0.604424287069753	ATGAATATCTTTCTA
chr6	16825157	16825158	chr6:16825158:A:G	rs59333382	A	G	A	Sox1.mouse_HMG_2	6	1	+	5.248416594562987	3.808239172694347	ATGAATATCTTTCTA
chr6	16851264	16851265	chr6:16851265:C:T	rs72827880	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.561889726610471	0.9164871935942543	GTGAAAATCATTCTT
chr6	16898958	16898959	chr6:16898959:A:G	rs34798178	A	G	A	Sox1.mouse_HMG_2	2	1	+	5.27166133422185	9.917063867238065	ATATATAGCATTCAT
chr6	16961770	16961771	chr6:16961771:T:A	rs535781072	T	A	T	Sox1.mouse_HMG_2	1	1	+	4.539943499369052	-0.10404880812418199	TTGAATTCCAGACAG
chr6	17035376	17035377	chr6:17035377:A:G	rs6930363	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	17039462	17039463	chr6:17039463:A:G	rs77880071	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.380103736509289	-2.4413090326507816	TTGAATGACATTTGG
chr6	17467111	17467112	chr6:17467112:C:T	rs10949427	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	17730490	17730491	chr6:17730491:C:G	rs61522380	C	G	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	17848332	17848333	chr6:17848333:A:G	rs585918	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	18010480	18010481	chr6:18010481:G:T	rs7753762	G	T	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	18110211	18110212	chr6:18110212:T:C	rs6899431	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	18120797	18120798	chr6:18120798:A:T	rs10949481	A	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	18123226	18123227	chr6:18123227:A:G	rs184430178	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	18284484	18284485	chr6:18284485:C:T	rs214544	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	18314171	18314172	chr6:18314172:T:G	rs144249512	T	G	T	Sox1.mouse_HMG_2	0	1	-	4.58308419648504	3.9142079907666822	AAGAATAACAGTTAC
chr6	18328142	18328143	chr6:18328143:C:A	rs11752401	C	A	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr6	18503536	18503537	chr6:18503537:A:G	rs6933856	A	G	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	18503607	18503608	chr6:18503608:T:C	rs6938628	T	C	T	Sox1.mouse_HMG_2	13	1	-	2.702502609885531	-2.2436150778871173	CTCAATAGCATACAG
chr6	18503615	18503616	chr6:18503616:A:G	rs72834200	A	G	A	Sox1.mouse_HMG_2	5	1	-	2.702502609885531	-4.20625216942969	CTCAATAGCATACAG
chr6	18562203	18562204	chr6:18562204:T:C	rs10949527	T	C	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	18585116	18585117	chr6:18585117:T:C	rs9477792	T	C	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	18693462	18693463	chr6:18693463:A:G	rs76211813	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr6	18751238	18751239	chr6:18751239:G:C	rs1033820	G	C	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr6	18784213	18784214	chr6:18784214:C:A	rs7770682	C	A	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	19027394	19027395	chr6:19027395:G:T	rs73380574	G	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	19303915	19303916	chr6:19303916:A:G	rs78375027	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	19325508	19325509	chr6:19325509:C:T	rs184161281	C	T	C	Sox1.mouse_HMG_2	7	1	+	4.618273726012726	4.15732927230562	ATGAGTTCAATTCAT
chr6	19362656	19362657	chr6:19362657:A:C	rs9465360	A	C	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr6	19477631	19477632	chr6:19477632:T:G	rs11963010	T	G	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr6	19602741	19602742	chr6:19602742:C:G	rs10806896	C	G	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	19784267	19784268	chr6:19784268:T:C	rs187202252	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	19855701	19855702	chr6:19855702:G:A	rs742228	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	20109360	20109361	chr6:20109361:G:A	rs2457335	G	A	A	Sox1.mouse_HMG_2	3	1	+	4.161633389246113	11.070388168561335	CTGGATGACATTCTG
chr6	20203190	20203191	chr6:20203191:T:C	rs9350221	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	20500534	20500535	chr6:20500535:A:G	rs12205104	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	20534217	20534218	chr6:20534218:T:A	rs10806920	T	A	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	20543177	20543178	chr6:20543178:A:G	rs554161743	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr6	20700389	20700390	chr6:20700390:G:A	rs11970626	G	A	G	Sox1.mouse_HMG_2	12	1	-	6.737261939582885	2.064674835914631	GTCACTATCATTCAG
chr6	20830721	20830722	chr6:20830722:A:G	rs9465913	A	G	a	Sox1.mouse_HMG_2	11	1	-	6.168536247726625	-0.7402185315885962	GTGAATAGCAGTAAT
chr6	20843919	20843920	chr6:20843920:G:A	rs9356756	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	20994072	20994073	chr6:20994073:C:T	rs9350310	C	T	c	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	20994166	20994167	chr6:20994167:T:C	rs9368262	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.127474486386329	-0.5165178211069054	GTAAATTACTTTCAT
chr6	21079125	21079126	chr6:21079126:A:G	rs11967298	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.0291481104538285	0.12039333113860728	GAGAATAAAATTCAT
chr6	21164896	21164897	chr6:21164897:G:A	rs6941714	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	21213968	21213969	chr6:21213969:T:C	rs6929219	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	21233180	21233181	chr6:21233181:T:C	rs6937811	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	21327220	21327221	chr6:21327221:G:A	rs9358413	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.43854391508608	1.7941172247040909	GTGAATATCCTTCAA
chr6	21601530	21601531	chr6:21601531:A:C	rs9466126	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	21747911	21747912	chr6:21747912:G:A	rs9466172	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	21748836	21748837	chr6:21748837:C:T	rs57764806	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	21882239	21882240	chr6:21882240:T:G	rs1927865	T	G	T	Sox1.mouse_HMG_2	2	1	-	7.876344653182572	7.1291302513523505	TTAAATAACAGTCAA
chr6	21990791	21990792	chr6:21990792:T:C	rs7750484	T	C	C	Sox1.mouse_HMG_2	13	1	-	4.841063114079816	-0.10505457369283283	GTGCCTTCCATTCAG
chr6	21990792	21990793	chr6:21990793:G:A	rs73736634	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.841063114079816	0.16847601041156052	GTGCCTTCCATTCAG
chr6	22068518	22068519	chr6:22068519:C:A	rs2328665	C	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	22147912	22147913	chr6:22147913:G:A	rs76515418	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	22150128	22150129	chr6:22150129:G:A	rs10498705	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	22501988	22501989	chr6:22501989:G:A	rs6456493	G	A	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	22586884	22586885	chr6:22586885:C:T	rs7773580	C	T	C	Sox1.mouse_HMG_2	0	1	+	6.0538241083614155	5.787880914591983	CTGAAGAGCATTCTT
chr6	22647037	22647038	chr6:22647038:C:T	rs9393324	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	22883026	22883027	chr6:22883027:T:A	rs1928075	T	A	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	22884678	22884679	chr6:22884679:C:T	rs78571304	C	T	C	Sox1.mouse_HMG_2	13	1	-	3.4300746109618263	8.376192298734475	GTGAAATCCATTCGT
chr6	23250748	23250749	chr6:23250749:C:T	rs114435103	C	T	C	Sox1.mouse_HMG_2	13	1	-	4.814371824631318	9.760489512403966	ATGAACATCATTCGT
chr6	23649183	23649184	chr6:23649184:A:G	rs74792762	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	23720228	23720229	chr6:23720229:C:T	rs35148131	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	23955367	23955368	chr6:23955368:C:G	rs489365	C	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	24141691	24141692	chr6:24141692:G:A	rs10946675	G	A	G	Sox1.mouse_HMG_2	12	1	-	7.250832221004926	2.578245117336672	TGGACTATCATTCAG
chr6	24287300	24287301	chr6:24287301:C:T	rs3789227	C	T	-	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	24606498	24606499	chr6:24606499:G:A	rs4236032	G	A	A	Sox1.mouse_HMG_2	9	1	-	4.939182896677252	4.939182896677252	TTGAATACCCTTCTG
chr6	24614834	24614835	chr6:24614835:G:A	rs7763790	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr6	24626169	24626170	chr6:24626170:G:A	rs79217922	G	A	G	Sox1.mouse_HMG_2	0	1	-	3.9824513190924824	3.71650812532305	CTGATTTGCATTCTA
chr6	24641247	24641248	chr6:24641248:A:C	rs9461043	A	C	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr6	24742951	24742952	chr6:24742952:A:G	rs73394533	A	G	A	Sox1.mouse_HMG_2	0	1	+	7.766415960874834	6.762179728239631	ATGAATTTCATACAG
chr6	24880232	24880233	chr6:24880233:A:G	rs911255058	A	G	A	Sox1.mouse_HMG_2	10	1	-	10.472225294559182	3.6242837162789034	ATGACTAACATTTAT
chr6	24888726	24888727	chr6:24888727:A:C	rs2747678	A	C	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	24952851	24952852	chr6:24952852:A:T	rs618388	A	T	A	Sox1.mouse_HMG_2	9	1	+	5.09951403656317	-1.8092407427520485	AAGAATAACATACAC
chr6	25002231	25002232	chr6:25002232:C:A	rs7753996	C	A	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	25002811	25002812	chr6:25002812:C:T	rs9356952	C	T	C	Sox1.mouse_HMG_2	5	1	-	5.662810667072913	5.662810667072913	ATGACGTTCATTCAC
chr6	25173919	25173920	chr6:25173920:G:A	rs1815094	G	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	25359178	25359179	chr6:25359179:T:A	rs148226139	T	A	T	Sox1.mouse_HMG_2	13	1	+	3.273253522615108	6.467617075773401	GTGAATGCCATTATA
chr6	25402074	25402075	chr6:25402075:A:G	rs880226	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	25485925	25485926	chr6:25485926:C:T	rs10498727	C	T	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	25488036	25488037	chr6:25488037:C:A	rs4712944	C	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	25548344	25548345	chr6:25548345:A:G	rs368638	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr6	25969880	25969881	chr6:25969881:T:A	rs1436309	T	A	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	26055375	26055376	chr6:26055376:T:C	rs954381952	T	C	T	Sox1.mouse_HMG_2	3	1	-	9.098746119164838	2.189991339849618	ATGACTTTCATTCTG
chr6	26124065	26124066	chr6:26124066:G:C	rs142116985	G	C	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	26124074	26124075	chr6:26124075:T:C	rs16891334	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	26269243	26269244	chr6:26269244:A:T	rs1226150795	A	T	.	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	26377317	26377318	chr6:26377318:A:G	rs1977	A	G	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	26398326	26398327	chr6:26398327:T:A	rs12208788	T	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	27188315	27188316	chr6:27188316:G:C	rs12196889	G	C	G	Sox1.mouse_HMG_2	2	1	+	4.927616436525649	-0.4650004983207897	ATGAATTAATTTCAT
chr6	27471345	27471346	chr6:27471346:C:A	rs2142705	C	A	C	Sox1.mouse_HMG_2	2	1	-	9.63121985981779	2.734525528195079	ATGACTTACATTTAT
chr6	27495571	27495572	chr6:27495572:G:A	rs73741744	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	27495590	27495591	chr6:27495591:A:G	rs373628017	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.8862388630103784	-2.9617027152699023	TCGAATAACATCCAG
chr6	27525126	27525127	chr6:27525127:A:C	rs9468152	A	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	28142369	28142370	chr6:28142370:C:T	rs868987	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	28350703	28350704	chr6:28350704:A:G	rs213239	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	28394693	28394694	chr6:28394694:T:C	rs16894060	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr6	28558877	28558878	chr6:28558878:A:C	rs414745	A	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	28646832	28646833	chr6:28646833:T:A	rs7743296	T	A	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	28710829	28710830	chr6:28710830:T:C	rs140041878	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	28712090	28712091	chr6:28712091:G:C	rs1539586	G	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	28735460	28735461	chr6:28735461:T:C	rs527579768	T	C	T	Sox1.mouse_HMG_2	13	1	-	3.7967059176190694	-1.1494117701535789	ATGCTTAACATTCAT
chr6	28735466	28735467	chr6:28735467:T:C	rs1233572	T	C	C	Sox1.mouse_HMG_2	7	1	-	3.7967059176190694	3.0956510980779934	ATGCTTAACATTCAT
chr6	28735486	28735487	chr6:28735487:T:G	rs9501014	T	G	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	28758303	28758304	chr6:28758304:G:A	rs140994936	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	28768706	28768707	chr6:28768707:C:T	rs9257157	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	28768707	28768708	chr6:28768708:G:A	rs112001540	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	28865394	28865395	chr6:28865395:A:G	rs393431	A	G	G	Sox1.mouse_HMG_2	5	1	-	6.778791646383034	-0.12996313293218562	TAGAATTGCAGTCAC
chr6	28865416	28865417	chr6:28865417:T:C	rs111951114	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	28955633	28955634	chr6:28955634:G:A	rs562406876	G	A	G	Sox1.mouse_HMG_2	14	1	+	4.842484120752507	4.67784287285756	GCAAATTCCATTCAG
chr6	29641822	29641823	chr6:29641823:T:C	rs62392946	T	C	t	Sox1.mouse_HMG_2	4	1	-	7.601774712979883	0.780361943819812	ATGAAGTTCATTCAA
chr6	29673173	29673174	chr6:29673174:T:C	rs61730327	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	29730258	29730259	chr6:29730259:A:C	rs9258191	A	C	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	29739122	29739123	chr6:29739123:G:A	rs929158	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	29754562	29754563	chr6:29754563:T:C	rs6933762	T	C	c	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	29758237	29758238	chr6:29758238:A:G	rs1633064	A	G	g	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	29770509	29770510	chr6:29770510:A:G	rs1611270	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	29770520	29770521	chr6:29770521:G:T	rs1611271	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	29835115	29835116	chr6:29835116:A:G	rs62391984	A	G	-	Sox1.mouse_HMG_2	0	1	+	6.3027972684180265	5.298561035782824	ATGACTTACACTCAG
chr6	29892807	29892808	chr6:29892808:A:T	rs73725492	A	T	-	Sox1.mouse_HMG_2	2	1	-	4.444025492490377	6.695317291096874	AGTAATTCCATTCAT
chr6	29892809	29892810	chr6:29892810:T:C	rs73725493	T	C	-	Sox1.mouse_HMG_2	0	1	-	4.444025492490377	3.4397892598551763	AGTAATTCCATTCAT
chr6	29924541	29924542	chr6:29924542:G:A	rs9259804	G	A	-	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	29932213	29932214	chr6:29932214:C:G	rs1465450284	C	G	-	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	29935789	29935790	chr6:29935790:T:A	rs9259941	T	A	-	Sox1.mouse_HMG_2	1	1	+	9.2651226326196	4.621130325126363	ATGAATGACAGTCTC
chr6	29947691	29947692	chr6:29947692:T:C	rs7745413	T	C	-	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	29947715	29947716	chr6:29947716:T:A	rs9260248	T	A	-	Sox1.mouse_HMG_2	0	1	-	4.444025492490377	3.5092060930025872	AGTAATTCCATTCAT
chr6	29947853	29947854	chr6:29947854:G:A	rs9260253	G	A	-	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr6	29947896	29947897	chr6:29947897:T:C	rs9260254	T	C	-	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	29959685	29959686	chr6:29959686:G:T	rs2735083	G	T	-	Sox1.mouse_HMG_2	2	1	+	3.286485989343788	-3.6102083422789217	CAGCATAGCATTCAA
chr6	29981552	29981553	chr6:29981553:T:C	rs17180521	T	C	t	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	29985650	29985651	chr6:29985651:T:G	rs11758493	T	G	-	Sox1.mouse_HMG_2	11	1	+	5.620977803071876	-1.2877769762433442	CTGAATAGCTGTCAC
chr6	29985664	29985665	chr6:29985665:C:T	rs11756025	C	T	-	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	29991359	29991360	chr6:29991360:G:A	rs9260944	G	A	a	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	30207264	30207265	chr6:30207265:T:C	rs114487278	T	C	T	Sox1.mouse_HMG_2	6	1	-	8.365589922608669	6.925412500740025	TTGAATAACTTTCAA
chr6	30319391	30319392	chr6:30319392:T:C	rs56847466	T	C	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	30344398	30344399	chr6:30344399:A:G	rs3132650	A	G	A	Sox1.mouse_HMG_2	7	1	-	4.983150029100975	5.444094482808082	GTGACTATCAGTTAC
chr6	30494306	30494307	chr6:30494307:A:G	rs1264456	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	30555771	30555772	chr6:30555772:A:C	chr6:30555772:A:C	A	C	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	30609394	30609395	chr6:30609395:G:C	rs114938123	G	C	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	30845319	30845320	chr6:30845320:G:A	rs2535333	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	30939488	30939489	chr6:30939489:G:A	rs6933909	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.2670962243287818	-1.3783063086874334	GGGACTGTCAGTCAC
chr6	30969113	30969114	chr6:30969114:G:C	rs139593512	G	C	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr6	31040892	31040893	chr6:31040893:A:T	rs9262561	A	T	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	31179416	31179417	chr6:31179417:T:C	rs3130457	T	C	T	Sox1.mouse_HMG_2	6	1	+	4.776291888324492	1.2648823203775208	CTGACTTTCACTCAG
chr6	31190727	31190728	chr6:31190728:T:C	rs12527342	T	C	T	Sox1.mouse_HMG_2	6	1	-	7.025573756556353	5.585396334687715	ATGACTACCACTCAC
chr6	31293443	31293444	chr6:31293444:G:A	rs75652792	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	31416553	31416554	chr6:31416554:G:C	rs9266844	G	C	-	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	31430280	31430281	chr6:31430281:G:A	rs114635873	G	A	-	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr6	31468803	31468804	chr6:31468804:T:C	rs2844507	T	C	-	Sox1.mouse_HMG_2	14	1	+	4.278286659575932	3.4036743168531958	GTGGATGGCATTCTT
chr6	31484654	31484655	chr6:31484655:C:T	rs2904789	C	T	-	Sox1.mouse_HMG_2	8	1	+	4.575600557851454	-1.0688261325305342	CTGGATAGCATTTAT
chr6	31618316	31618317	chr6:31618317:C:T	rs2736177	C	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	31652776	31652777	chr6:31652777:G:A	chr6:31652777:G:A	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	31953697	31953698	chr6:31953698:G:A	rs2072632	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	32178355	32178356	chr6:32178356:A:G	rs74395371	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr6	32224782	32224783	chr6:32224783:G:A	rs2267644	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	32268117	32268118	chr6:32268118:T:G	rs3132931	T	G	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr6	32439655	32439656	chr6:32439656:G:C	rs3129873	G	C	g	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	32439662	32439663	chr6:32439663:T:C	rs3129874	T	C	T	Sox1.mouse_HMG_2	5	1	+	8.26303192985626	1.3542771505410398	TTGACTAACAGTCTT
chr6	32439690	32439691	chr6:32439691:T:C	rs3129875	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	32442359	32442360	chr6:32442360:T:C	rs3129883	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	32540035	32540036	chr6:32540036:C:G	rs72853918	C	G	.	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	32604959	32604960	chr6:32604960:G:A	rs28638783	G	A	.	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	32604985	32604986	chr6:32604986:G:C	rs9270938	G	C	.	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	32631487	32631488	chr6:32631488:G:A	rs9272062	G	A	.	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	32631525	32631526	chr6:32631526:C:T	rs9272063	C	T	.	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	32665908	32665909	chr6:32665909:T:G	chr6:32665909:T:G	T	G	t	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr6	32665909	32665910	chr6:32665910:T:C	rs9274475	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	32665935	32665936	chr6:32665936:A:G	rs9274477	A	G	A	Sox1.mouse_HMG_2	14	1	+	3.9432465940566006	4.107887841951548	CTGAATCCCACTCAA
chr6	32685358	32685359	chr6:32685359:A:G	rs28746965	A	G	a	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	32685367	32685368	chr6:32685368:A:C	rs28746966	A	C	a	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	32689242	32689243	chr6:32689243:C:G	rs9405042	C	G	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	32813136	32813137	chr6:32813137:G:A	rs2070120	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.5283024992590835	-1.1442846044091715	GTAAAGGACATTCAT
chr6	32816320	32816321	chr6:32816321:G:A	rs9404998	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	32884159	32884160	chr6:32884160:T:C	rs4947355	T	C	T	Sox1.mouse_HMG_2	10	1	+	6.549483457488158	-0.29845812079212297	ATTACTTTCATTCAT
chr6	32909488	32909489	chr6:32909489:G:A	rs154988	G	A	A	Sox1.mouse_HMG_2	8	1	-	6.566388610355943	0.9219619199739574	TTGAATTACATTTTA
chr6	33053478	33053479	chr6:33053479:G:A	rs3130586	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	33143953	33143954	chr6:33143954:T:C	rs3130147	T	C	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	33229766	33229767	chr6:33229767:C:T	rs213196	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	33589963	33589964	chr6:33589964:T:C	rs375555	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	33641263	33641264	chr6:33641264:G:A	rs139559011	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.486100830634374	-0.15930170238184221	CCGACTGACAGTCAG
chr6	33673943	33673944	chr6:33673944:C:T	rs9368771	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	33718062	33718063	chr6:33718063:C:G	rs35250767	C	G	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	33823452	33823453	chr6:33823453:C:T	rs10947443	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	33948751	33948752	chr6:33948752:T:C	rs2495957	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	34102481	34102482	chr6:34102482:A:G	rs12214371	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	34359604	34359605	chr6:34359605:C:T	rs60100381	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	34588075	34588076	chr6:34588076:G:A	chr6:34588076:G:A	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr6	34818527	34818528	chr6:34818528:C:T	rs1125341	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	34925979	34925980	chr6:34925980:G:A	rs2473614	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	35096771	35096772	chr6:35096772:C:T	rs114657135	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	35311834	35311835	chr6:35311835:T:A	rs190026036	T	A	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	35327688	35327689	chr6:35327689:C:G	rs548611970	C	G	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	35602837	35602838	chr6:35602838:G:T	rs916772590	G	T	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	35788304	35788305	chr6:35788305:C:G	rs9462110	C	G	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	35893582	35893583	chr6:35893583:G:T	chr6:35893583:G:T	G	T	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	36018578	36018579	chr6:36018579:G:A	rs80299928	G	A	g	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	36119198	36119199	chr6:36119199:A:C	rs11759192	A	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	36431342	36431343	chr6:36431343:T:C	rs7741260	T	C	c	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	36653669	36653670	chr6:36653670:G:A	rs10456443	G	A	G	Sox1.mouse_HMG_2	14	1	-	3.9588357441743156	4.833448086897052	GTGACTGACATTTTC
chr6	36730382	36730383	chr6:36730383:G:A	rs236463	G	A	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	36751301	36751302	chr6:36751302:C:T	rs9986517	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	36759303	36759304	chr6:36759304:C:T	rs76063794	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	36873020	36873021	chr6:36873021:G:A	rs12661551	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.013818445149735	0.34123134148148	ATGAATTTCAGGCAG
chr6	36961784	36961785	chr6:36961785:A:G	rs73422765	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	37102198	37102199	chr6:37102199:G:A	rs9470474	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	37130407	37130408	chr6:37130408:G:C	rs9368983	G	C	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr6	37491274	37491275	chr6:37491275:A:G	rs548723124	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	38025665	38025666	chr6:38025666:C:G	rs764606561	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	38050244	38050245	chr6:38050245:G:A	rs77000809	G	A	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	38080357	38080358	chr6:38080358:C:T	rs9470762	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	38080380	38080381	chr6:38080381:T:C	rs72852555	T	C	T	Sox1.mouse_HMG_2	6	1	-	3.05254814943807	1.6123707275694317	CTTAATAACGTTCAT
chr6	38306664	38306665	chr6:38306665:A:G	rs77545694	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	38322307	38322308	chr6:38322308:T:C	rs570746850	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	38338338	38338339	chr6:38338339:G:A	rs74330219	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	38345403	38345404	chr6:38345404:G:A	rs1931759	G	A	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	38350596	38350597	chr6:38350597:C:T	rs228188	C	T	T	Sox1.mouse_HMG_2	10	1	+	5.578001973527967	12.425943551808247	CTGAATTCCACTCTT
chr6	38604188	38604189	chr6:38604189:A:G	rs116437343	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	38776779	38776780	chr6:38776780:T:C	rs1738262	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	38801334	38801335	chr6:38801335:G:A	rs732447	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	38847617	38847618	chr6:38847618:A:T	rs72851599	A	T	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	38872302	38872303	chr6:38872303:T:C	rs143005131	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	39015921	39015922	chr6:39015922:G:A	rs4714207	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr6	39573580	39573581	chr6:39573581:C:T	rs77592220	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	39883237	39883238	chr6:39883238:G:A	rs114047532	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr6	39922522	39922523	chr6:39922523:A:C	rs2984659	A	C	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	39952205	39952206	chr6:39952206:C:T	rs11963231	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	40196617	40196618	chr6:40196618:C:T	rs3857578	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	40303160	40303161	chr6:40303161:C:T	rs28448427	C	T	C	Sox1.mouse_HMG_2	6	1	-	3.797457511183299	5.237634933051938	TGGACTGCCAGTCAC
chr6	40336963	40336964	chr6:40336964:G:A	rs9296331	G	A	G	Sox1.mouse_HMG_2	0	1	-	6.053214309412933	5.787271115643501	CTGACTCACAGTCAA
chr6	40340767	40340768	chr6:40340768:A:C	rs141256704	A	C	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	40436884	40436885	chr6:40436885:C:T	rs1991875	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	40522202	40522203	chr6:40522203:A:G	rs454023	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	40903565	40903566	chr6:40903566:C:A	rs115221951	C	A	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	40904273	40904274	chr6:40904274:G:A	rs62396111	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	40986922	40986923	chr6:40986923:A:G	rs116270689	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	41038940	41038941	chr6:41038941:T:C	rs9394755	T	C	C	Sox1.mouse_HMG_2	9	1	-	6.400616483048202	-0.5081382962670177	ACAAATGCCATTCAT
chr6	41209196	41209197	chr6:41209197:A:G	rs4714434	A	G	N	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	41227408	41227409	chr6:41227409:A:G	rs6921119	A	G	-	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr6	41286976	41286977	chr6:41286977:T:C	rs79239238	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr6	41316228	41316229	chr6:41316229:A:G	rs7761652	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	41594570	41594571	chr6:41594571:T:C	rs932797	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr6	41652982	41652983	chr6:41652983:T:G	rs1008895	T	G	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	42091873	42091874	chr6:42091874:G:A	rs112175639	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	42189954	42189955	chr6:42189955:T:C	rs7746021	T	C	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	42196892	42196893	chr6:42196893:G:A	rs62414729	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	42212665	42212666	chr6:42212666:G:A	rs9367134	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	42216661	42216662	chr6:42216662:C:T	rs13197564	C	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	42281615	42281616	chr6:42281616:A:G	rs34981935	A	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	42281648	42281649	chr6:42281649:G:A	rs149155785	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	42371734	42371735	chr6:42371735:A:G	rs75967841	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	42547576	42547577	chr6:42547577:G:A	rs9367155	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	42547579	42547580	chr6:42547580:T:C	rs768798569	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	42707244	42707245	chr6:42707245:G:T	rs9357402	G	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	42936535	42936536	chr6:42936536:G:T	rs6458312	G	T	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr6	43231439	43231440	chr6:43231440:T:C	rs2756179	T	C	T	Sox1.mouse_HMG_2	7	1	+	5.674871114765422	6.135815568472529	ATTACTTTCATTCAC
chr6	43746876	43746877	chr6:43746877:T:C	chr6:43746877:T:C	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	43829057	43829058	chr6:43829058:T:C	rs731678	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	43931790	43931791	chr6:43931791:C:T	rs864430	C	T	T	Sox1.mouse_HMG_2	2	1	-	5.499877480861533	0.8544749478453154	TTGAATAGGATTTAT
chr6	43974651	43974652	chr6:43974652:T:C	rs4714729	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	43977121	43977122	chr6:43977122:G:A	rs1740071	G	A	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	44237589	44237590	chr6:44237590:A:T	rs552835518	A	T	A	Sox1.mouse_HMG_2	1	1	-	4.297865969364723	-0.3461263381285105	CTGACTCACATTTAG
chr6	44237605	44237606	chr6:44237606:G:C	rs7738226	G	C	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	44333597	44333598	chr6:44333598:G:A	rs76323006	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr6	44431439	44431440	chr6:44431440:A:G	rs116230878	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	44431451	44431452	chr6:44431452:T:G	rs564990	T	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	44576223	44576224	chr6:44576224:T:A	rs184475	T	A	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	44625144	44625145	chr6:44625145:C:T	rs574170598	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	44651365	44651366	chr6:44651366:A:C	rs75149745	A	C	g	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	44772117	44772118	chr6:44772118:T:C	rs112182394	T	C	T	Sox1.mouse_HMG_2	11	1	+	6.971193674000426	0.062438894685205804	ATAAATTCCATTTAT
chr6	44808398	44808399	chr6:44808399:T:G	rs4644056	T	G	T	Sox1.mouse_HMG_2	1	1	+	4.097193555204069	-0.8512699313677382	ATGAATATAAATCAC
chr6	44837639	44837640	chr6:44837640:C:T	rs3799968	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	44932910	44932911	chr6:44932911:G:T	rs512747	G	T	G	Sox1.mouse_HMG_2	2	1	+	3.8701300100025637	-3.026564321620148	AAGAATTCCATTAAC
chr6	45567482	45567483	chr6:45567483:C:G	rs74498911	C	G	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	45719052	45719053	chr6:45719053:G:A	rs2782659	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	45823272	45823273	chr6:45823273:T:A	rs6458468	T	A	T	Sox1.mouse_HMG_2	13	1	-	3.185082963263734	-0.009280589894558322	TGGAAAACCATTCAG
chr6	46184249	46184250	chr6:46184250:C:T	rs6931128	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	46184269	46184270	chr6:46184270:G:A	rs113057435	G	A	G	Sox1.mouse_HMG_2	13	1	+	3.76543463787867	8.711552325651317	CTGCATTCCATTCGT
chr6	46469818	46469819	chr6:46469819:T:C	rs4711852	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	46492409	46492410	chr6:46492410:T:A	rs9381458	T	A	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	46613363	46613364	chr6:46613364:C:T	rs9463216	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	46782299	46782300	chr6:46782300:C:G	rs10948308	C	G	G	Sox1.mouse_HMG_2	12	1	+	8.120921888345768	1.220473237879403	TTGAATAAGAGTCAT
chr6	46909608	46909609	chr6:46909609:C:A	rs78336833	C	A	C	Sox1.mouse_HMG_2	8	1	+	4.419970997180907	-0.42952581833119174	ATTAATGGCATTCTC
chr6	46975026	46975027	chr6:46975027:C:G	rs10948315	C	G	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	46990238	46990239	chr6:46990239:G:A	chr6:46990239:G:A	G	A	G	Sox1.mouse_HMG_2	12	1	-	9.019641399724478	4.347054296056223	CAGAATAACATTCTT
chr6	46994214	46994215	chr6:46994215:C:A	rs1226500	C	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	47034280	47034281	chr6:47034281:T:C	rs116018772	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	47069417	47069418	chr6:47069418:C:T	rs1226538	C	T	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	47116151	47116152	chr6:47116152:T:C	rs79843809	T	C	T	Sox1.mouse_HMG_2	12	1	-	3.6672640378932746	3.6672640378932746	AGGAATATCATTAAG
chr6	47415500	47415501	chr6:47415501:A:G	rs9367275	A	G	A	Sox1.mouse_HMG_2	10	1	-	4.470171549909298	-2.377770028370983	TTGAATAGCATACTA
chr6	47440688	47440689	chr6:47440689:T:C	rs79660381	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	47716854	47716855	chr6:47716855:G:A	rs1360157	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	47735142	47735143	chr6:47735143:T:C	chr6:47735143:T:C	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.8648171113794025	-3.043937667935817	ATGACTTCCAATCTT
chr6	47735150	47735151	chr6:47735151:A:G	chr6:47735151:A:G	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.8648171113794025	-0.7791751961138308	ATGACTTCCAATCTT
chr6	47855349	47855350	chr6:47855350:G:C	rs562163	G	C	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr6	47986745	47986746	chr6:47986746:T:C	rs2180739	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	48176673	48176674	chr6:48176674:A:G	rs11964091	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	48665853	48665854	chr6:48665854:C:T	rs243123	C	T	.	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	48884151	48884152	chr6:48884152:G:A	rs1938214	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	48884160	48884161	chr6:48884161:T:C	rs78922258	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	49576786	49576787	chr6:49576787:A:C	rs12213649	A	C	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	50120348	50120349	chr6:50120349:A:G	rs12199907	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	50188035	50188036	chr6:50188036:C:T	rs1340840	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	50602675	50602676	chr6:50602676:T:C	rs562247	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	50602680	50602681	chr6:50602681:C:A	rs562219	C	A	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	50835336	50835337	chr6:50835337:A:G	rs987237	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr6	50864743	50864744	chr6:50864744:C:A	rs9381907	C	A	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	50962327	50962328	chr6:50962328:A:G	rs6925748	A	G	G	Sox1.mouse_HMG_2	13	1	+	6.799960244667618	1.8538425568949695	CTGAATACCAGCCAT
chr6	50978807	50978808	chr6:50978808:C:T	rs4141973	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	51365734	51365735	chr6:51365735:A:G	rs1409891	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	51637515	51637516	chr6:51637516:T:C	rs2784224	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	52000577	52000578	chr6:52000578:T:C	rs12212158	T	C	C	Sox1.mouse_HMG_2	14	1	-	5.10763438450272	5.272275632397668	ATGAATGACAGACAA
chr6	52157148	52157149	chr6:52157149:C:T	rs75980782	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	52200190	52200191	chr6:52200191:C:G	rs11755816	C	G	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	52200210	52200211	chr6:52200211:A:G	rs11751159	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	52234271	52234272	chr6:52234272:C:T	rs75452458	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	52234272	52234273	chr6:52234273:G:A	rs182601891	G	A	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	52234290	52234291	chr6:52234291:G:A	rs571434513	G	A	G	Sox1.mouse_HMG_2	2	1	+	2.3669213724197204	-2.278481160596495	GTGGCTTCCAGTCAC
chr6	52340835	52340836	chr6:52340836:C:T	rs7774677	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	52350989	52350990	chr6:52350990:T:C	rs8180555	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.020735448885495	-1.6232568586077376	GTGAACAAGATTCAC
chr6	52610559	52610560	chr6:52610560:C:T	rs6921008	C	T	T	Sox1.mouse_HMG_2	1	1	-	5.589628459601721	5.894099638680296	AGGACTAGCAGTCAG
chr6	52749825	52749826	chr6:52749826:G:A	rs185909289	G	A	g	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	52779188	52779189	chr6:52779189:G:C	rs9395819	G	C	-	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	52961271	52961272	chr6:52961272:A:G	rs547957	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	53031572	53031573	chr6:53031573:C:T	rs222455	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	53111518	53111519	chr6:53111519:C:T	rs2816349	C	T	C	Sox1.mouse_HMG_2	12	1	+	3.8132803158893647	-0.8593067877788897	GGGAATGACATTCCT
chr6	53307042	53307043	chr6:53307043:C:T	rs13202564	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	53426777	53426778	chr6:53426778:T:A	rs7744451	T	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	53429754	53429755	chr6:53429755:A:T	rs1401158	A	T	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	53583241	53583242	chr6:53583242:T:G	rs9349677	T	G	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	53708974	53708975	chr6:53708975:A:G	rs59649693	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	53718208	53718209	chr6:53718209:A:G	rs9474634	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	53737406	53737407	chr6:53737407:A:G	rs7749273	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	53772394	53772395	chr6:53772395:A:G	rs10755766	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	53810828	53810829	chr6:53810829:A:T	rs77681213	A	T	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	53962582	53962583	chr6:53962583:C:T	rs763813	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr6	54085071	54085072	chr6:54085072:C:T	rs860978	C	T	T	Sox1.mouse_HMG_2	14	1	+	3.252982603202127	4.127594945924863	AGGAATTGCATCCAC
chr6	54431865	54431866	chr6:54431866:A:G	rs171492	A	G	g	Sox1.mouse_HMG_2	10	1	-	4.645009345085858	-2.202932233194423	ATGACTACCCTTCTT
chr6	54431878	54431879	chr6:54431879:T:C	rs243818	T	C	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	54712310	54712311	chr6:54712311:T:G	rs73442093	T	G	t	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	54879829	54879830	chr6:54879830:G:A	rs7749067	G	A	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	54907139	54907140	chr6:54907140:C:T	rs239828	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	55354654	55354655	chr6:55354655:T:A	rs56077717	T	A	g	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	55419973	55419974	chr6:55419974:T:C	rs7746284	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.55119919210124	-1.3575555872139795	ATGACTACAATTCTG
chr6	55828432	55828433	chr6:55828433:C:T	rs1374551	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	55876271	55876272	chr6:55876272:T:C	rs9464298	T	C	C	Sox1.mouse_HMG_2	4	1	-	6.67328542675815	-0.1481273424019246	TTGAATACAATTTAT
chr6	55877978	55877979	chr6:55877979:G:C	rs10485078	G	C	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr6	55983329	55983330	chr6:55983330:C:T	rs6911711	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	56102597	56102598	chr6:56102598:T:C	rs6459124	T	C	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	56289258	56289259	chr6:56289259:G:T	rs4455670	G	T	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	56542308	56542309	chr6:56542309:C:T	rs62412509	C	T	C	Sox1.mouse_HMG_2	7	1	-	7.938784425685879	8.639839245226957	CTGAATAGCATTGAA
chr6	56595784	56595785	chr6:56595785:A:C	rs72879282	A	C	-	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	56595785	56595786	chr6:56595786:C:T	rs72879285	C	T	-	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr6	56655511	56655512	chr6:56655512:C:T	rs11966986	C	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	56804225	56804226	chr6:56804226:G:T	rs13201733	G	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	56863423	56863424	chr6:56863424:T:C	rs74572442	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	57423965	57423966	chr6:57423966:T:C	rs9475938	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	57500500	57500501	chr6:57500501:C:T	rs72877174	C	T	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	58402498	58402499	chr6:58402499:C:A	rs111370950	C	A	.	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	60329509	60329510	chr6:60329510:C:T	rs1221858838	C	T	.	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	62060338	62060339	chr6:62060339:C:A	rs4421181	C	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	62148048	62148049	chr6:62148049:G:A	rs1401352	G	A	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	62276045	62276046	chr6:62276046:T:C	rs9454834	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.588858604420626	-2.3198961748945943	CTGAGTTGCAGTCAG
chr6	63000053	63000054	chr6:63000054:T:A	rs7750310	T	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	63246461	63246462	chr6:63246462:G:A	rs10755383	G	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	63349586	63349587	chr6:63349587:A:G	rs994110153	A	G	A	Sox1.mouse_HMG_2	14	1	-	3.558059926550586	2.68344758382785	TCGAATTGCAATCAT
chr6	63808871	63808872	chr6:63808872:G:A	rs4710440	G	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	63883463	63883464	chr6:63883464:A:G	rs1482460	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	63883495	63883496	chr6:63883496:G:T	rs116381139	G	T	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	64020167	64020168	chr6:64020168:A:G	rs12190415	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	64050992	64050993	chr6:64050993:A:G	rs9353474	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	64081514	64081515	chr6:64081515:T:C	rs9342117	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	64676841	64676842	chr6:64676842:G:A	rs7759743	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	65055962	65055963	chr6:65055963:A:G	rs9363328	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr6	65348448	65348449	chr6:65348449:T:C	rs9363348	T	C	T	Sox1.mouse_HMG_2	4	1	+	4.490813338983565	8.930165040276714	ATGATTTGCATTTAT
chr6	65469718	65469719	chr6:65469719:A:T	rs9354253	A	T	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	65570171	65570172	chr6:65570172:A:G	rs66812553	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.739415120232292	-3.1693396590829304	TTGAATACCTTTTAC
chr6	66081295	66081296	chr6:66081296:G:T	rs3912417	G	T	g	Sox1.mouse_HMG_2	2	1	+	4.406765345870953	-2.489928985751759	AAGAATAGCATTGAC
chr6	67267983	67267984	chr6:67267984:C:A	rs67645556	C	A	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	67300043	67300044	chr6:67300044:G:A	rs13203717	G	A	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	67300088	67300089	chr6:67300089:G:A	rs9346004	G	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	68235429	68235430	chr6:68235430:A:G	rs2786579	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	69060079	69060080	chr6:69060080:C:T	rs7761948	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	69139310	69139311	chr6:69139311:C:T	rs11759629	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	69620077	69620078	chr6:69620078:C:T	rs12110750	C	T	C	Sox1.mouse_HMG_2	7	1	+	3.5754859269744736	3.1145414732673666	TTAATTACCATTCAG
chr6	69837674	69837675	chr6:69837675:G:A	rs2066243	G	A	A	Sox1.mouse_HMG_2	14	1	-	4.2907270066816965	5.165339349404433	ATGAATTACACTTAC
chr6	69887042	69887043	chr6:69887043:A:C	rs3805956	A	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	69989486	69989487	chr6:69989487:C:T	rs4599586	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	70033949	70033950	chr6:70033950:G:C	rs12198558	G	C	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	70193841	70193842	chr6:70193842:T:C	rs1200562	T	C	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	70312217	70312218	chr6:70312218:G:C	rs77896971	G	C	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	70312218	70312219	chr6:70312219:G:T	rs1398315184	G	T	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	70900310	70900311	chr6:70900311:G:C	rs73505638	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr6	70957846	70957847	chr6:70957847:G:C	rs6900011	G	C	C	Sox1.mouse_HMG_2	8	1	-	4.269183626401454	-1.4493510361342543	ATGAAGGCCATTCTA
chr6	70957864	70957865	chr6:70957865:A:G	rs62420338	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	71123458	71123459	chr6:71123459:C:T	rs9455336	C	T	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	71188467	71188468	chr6:71188468:G:C	rs77875047	G	C	C	Sox1.mouse_HMG_2	14	1	+	7.389972874835127	7.66842864890013	AGGAATTACATTCTG
chr6	71350975	71350976	chr6:71350976:C:T	rs1885675	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	71461000	71461001	chr6:71461001:C:T	chr6:71461001:C:T	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	71529581	71529582	chr6:71529582:G:A	rs169211	G	A	A	Sox1.mouse_HMG_2	5	1	+	8.982244467750276	8.982244467750276	TTGAAGAGCATTCAT
chr6	71531785	71531786	chr6:71531786:A:C	rs9342840	A	C	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	72214232	72214233	chr6:72214233:A:G	rs2463698	A	G	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	72445998	72445999	chr6:72445999:C:T	rs1339227	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr6	72748902	72748903	chr6:72748903:C:T	rs183833980	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	72748903	72748904	chr6:72748904:G:A	rs115164479	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	73245812	73245813	chr6:73245813:T:C	rs111730316	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.362221632597286	-3.546533146717934	CAGAATAACAGTCGG
chr6	73517329	73517330	chr6:73517330:C:A	rs9442917	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	73518282	73518283	chr6:73518283:A:G	rs1874229	A	G	G	Sox1.mouse_HMG_2	9	1	+	3.366340018370847	-3.5424147609443724	AAGATTTGCATTCAG
chr6	73786125	73786126	chr6:73786126:A:G	rs7769064	A	G	a	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	73873198	73873199	chr6:73873199:A:T	rs3012564	A	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	73923949	73923950	chr6:73923950:A:G	rs557901588	A	G	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	73924061	73924062	chr6:73924062:G:A	rs189895967	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	74255834	74255835	chr6:74255835:C:T	rs9359074	C	T	c	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	74333536	74333537	chr6:74333537:A:G	rs1191290256	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.894009528544307	-2.0147452507709116	ATGTATAAAATTCAC
chr6	74351990	74351991	chr6:74351991:G:A	rs3843506	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	74578810	74578811	chr6:74578811:G:T	rs77546671	G	T	G	Sox1.mouse_HMG_2	7	1	-	4.955697623683846	5.352382344351915	ATGATTTCCATTCTA
chr6	74654512	74654513	chr6:74654513:T:C	rs2485091	T	C	T	Sox1.mouse_HMG_2	13	1	-	6.106885825195015	1.160768137422366	ATTACTGGCATTCAT
chr6	74654543	74654544	chr6:74654544:T:G	rs62438603	T	G	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr6	74941421	74941422	chr6:74941422:C:T	rs74890844	C	T	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	75253236	75253237	chr6:75253237:G:A	rs41269315	G	A	A	Sox1.mouse_HMG_2	7	1	+	4.021160316108605	4.722215135649681	CTGAACCGCATTCAC
chr6	75288730	75288731	chr6:75288731:G:A	rs240380	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	75482327	75482328	chr6:75482328:A:G	rs10806039	A	G	A	Sox1.mouse_HMG_2	10	1	-	8.912030730277243	2.06408915199696	ATGAATACCATTGAA
chr6	75922487	75922488	chr6:75922488:G:A	rs188333091	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	75933857	75933858	chr6:75933858:A:G	rs34689566	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.68039809865541	-2.1410146705046604	TTCAATAATATTCAC
chr6	76043896	76043897	chr6:76043897:G:A	rs73468825	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	76304499	76304500	chr6:76304500:G:A	rs9341561	G	A	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	76512250	76512251	chr6:76512251:A:T	rs9341581	A	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr6	76619895	76619896	chr6:76619896:A:T	rs4527665	A	T	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	76811643	76811644	chr6:76811644:G:A	rs9361146	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	76864541	76864542	chr6:76864542:G:A	rs9361159	G	A	G	Sox1.mouse_HMG_2	6	1	+	5.125948537377034	6.5661259592456735	ATGAATGTCCTTCTT
chr6	77296038	77296039	chr6:77296039:C:A	rs1935729	C	A	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	77296236	77296237	chr6:77296237:T:G	rs1592219	T	G	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	77756958	77756959	chr6:77756959:A:G	rs6925083	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.7882272336879463	-3.033185535472126	GTGGATAACATTTAG
chr6	78639176	78639177	chr6:78639177:C:T	rs6909051	C	T	C	Sox1.mouse_HMG_2	10	1	-	3.6805719504293286	-0.41477211212585485	GTCACTGACAGTCAC
chr6	79168021	79168022	chr6:79168022:T:C	rs6911361	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	79180397	79180398	chr6:79180398:C:T	rs61558200	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	79756246	79756247	chr6:79756247:C:G	rs2144191	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	79872648	79872649	chr6:79872649:C:T	rs346316	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	79874434	79874435	chr6:79874435:T:C	rs41346150	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr6	80181394	80181395	chr6:80181395:A:T	rs2490244	A	T	T	Sox1.mouse_HMG_2	11	1	-	2.890214564530746	-4.0185402147844735	ATGGCTGACAGTCAG
chr6	80287441	80287442	chr6:80287442:T:C	rs653581	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	80291298	80291299	chr6:80291299:T:C	rs6906534	T	C	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr6	80317181	80317182	chr6:80317182:A:G	rs806843	A	G	a	Sox1.mouse_HMG_2	14	1	+	8.042786818544867	8.207428066439814	TTGACTAAAATTCAA
chr6	80402471	80402472	chr6:80402472:T:A	rs1583570	T	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	80722422	80722423	chr6:80722423:G:A	rs62424616	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	80733757	80733758	chr6:80733758:T:C	rs9294180	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	80781328	80781329	chr6:80781329:T:G	rs7747514	T	G	T	Sox1.mouse_HMG_2	10	1	+	3.427829892368236	0.6752323766431393	GAGAATTGCATGCAT
chr6	80781334	80781335	chr6:80781335:C:T	rs80238754	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	80781343	80781344	chr6:80781344:C:T	rs147910032	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	80781344	80781345	chr6:80781345:G:A	rs75176608	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	81067327	81067328	chr6:81067328:A:G	rs9361722	A	G	A	Sox1.mouse_HMG_2	6	1	-	5.191719493146983	1.680309925200011	AGCAATTACATTCAG
chr6	81172713	81172714	chr6:81172714:G:A	rs118137685	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	81238197	81238198	chr6:81238198:C:G	rs9361775	C	G	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	81364099	81364100	chr6:81364100:T:A	rs1857306	T	A	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	81367342	81367343	chr6:81367343:A:C	rs1343243	A	C	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	81559035	81559036	chr6:81559036:A:C	rs4448140	A	C	A	Sox1.mouse_HMG_2	0	1	+	5.175900180422689	4.50702397470433	ATAAATATCACTCAT
chr6	81561130	81561131	chr6:81561131:C:T	chr6:81561131:C:T	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	81561135	81561136	chr6:81561136:T:A	rs7739492	T	A	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	82030823	82030824	chr6:82030824:G:A	rs59219161	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	82329502	82329503	chr6:82329503:A:G	rs7762072	A	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	82398130	82398131	chr6:82398131:A:G	chr6:82398131:A:G	A	G	A	Sox1.mouse_HMG_2	13	1	+	10.792397395539075	5.846279707766427	ATGACTCACATTCAT
chr6	82398135	82398136	chr6:82398136:T:C	rs9341920	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	82521614	82521615	chr6:82521615:C:T	rs35301711	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	82590125	82590126	chr6:82590126:C:T	rs114339045	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	82702673	82702674	chr6:82702674:T:C	rs9344298	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	82877642	82877643	chr6:82877643:T:C	rs9361982	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.44213100314526	-2.4666237761699623	ATGAATGCCATTGTG
chr6	82955064	82955065	chr6:82955065:G:A	rs59491134	G	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	82957318	82957319	chr6:82957319:G:T	rs34566948	G	T	G	Sox1.mouse_HMG_2	7	1	-	7.223124181946738	7.619808902614807	GTGAATTCCTTTCAG
chr6	82957325	82957326	chr6:82957326:C:T	rs7739323	C	T	T	Sox1.mouse_HMG_2	0	1	-	7.223124181946738	8.227360414581941	GTGAATTCCTTTCAG
chr6	83252957	83252958	chr6:83252958:T:C	rs145736814	T	C	T	Sox1.mouse_HMG_2	14	1	+	9.949242481060784	9.07463013833805	CTGAAAAACATTCAT
chr6	83520784	83520785	chr6:83520785:G:A	rs9449650	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	83554613	83554614	chr6:83554614:C:T	rs1158059	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	84043718	84043719	chr6:84043719:C:G	rs1928279	C	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	84463869	84463870	chr6:84463870:A:G	rs72900827	A	G	A	Sox1.mouse_HMG_2	13	1	+	4.66541896757213	-0.2806987202005188	GGGCATAACATTCAT
chr6	84491627	84491628	chr6:84491628:G:A	rs79690168	G	A	G	Sox1.mouse_HMG_2	0	1	+	8.536275923962833	9.540512156598034	GTGACTTTCAGTCAG
chr6	84554871	84554872	chr6:84554872:A:C	rs7770073	A	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	84619279	84619280	chr6:84619280:A:G	rs16874873	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr6	84862028	84862029	chr6:84862029:T:A	rs9353228	T	A	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr6	85081299	85081300	chr6:85081300:T:A	rs1325974	T	A	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	85111975	85111976	chr6:85111976:G:A	rs867744	G	A	A	Sox1.mouse_HMG_2	8	1	-	4.947994319408089	-0.696432370973897	ATGAATCACGTTCAA
chr6	85115968	85115969	chr6:85115969:A:G	rs6901432	A	G	G	Sox1.mouse_HMG_2	5	1	-	3.8448535053631328	-3.0639012739520894	AGTAATGCCATTCAT
chr6	85361265	85361266	chr6:85361266:C:T	rs6929086	C	T	C	Sox1.mouse_HMG_2	8	1	+	5.10763438450272	-0.5367923058792664	ATGAATGACAGCCAA
chr6	85361285	85361286	chr6:85361286:A:T	rs490055	A	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	85361637	85361638	chr6:85361638:A:T	rs140652535	A	T	A	Sox1.mouse_HMG_2	14	1	+	8.915785049120894	10.233494413803578	ATTAATACCATTCAA
chr6	86962095	86962096	chr6:86962096:A:G	rs78382687	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	87154622	87154623	chr6:87154623:C:G	rs78334590	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	87255809	87255810	chr6:87255810:T:C	rs6908834	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr6	87689848	87689849	chr6:87689849:T:A	rs62417757	T	A	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	87723904	87723905	chr6:87723905:G:A	rs146881226	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	87723948	87723949	chr6:87723949:A:G	rs2754272	A	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	87796976	87796977	chr6:87796977:C:T	chr6:87796977:C:T	C	T	C	Sox1.mouse_HMG_2	0	1	+	3.588222170580436	3.3222789768110035	CTACATTACATTCAC
chr6	87817131	87817132	chr6:87817132:G:T	rs2787897	G	T	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	87869841	87869842	chr6:87869842:G:A	rs4129674	G	A	A	Sox1.mouse_HMG_2	14	1	-	7.532569884055578	8.407182226778314	CTGAATTGCATCCAC
chr6	88072643	88072644	chr6:88072644:A:G	rs806444	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr6	88087978	88087979	chr6:88087979:C:A	rs9450877	C	A	A	Sox1.mouse_HMG_2	8	1	+	5.307164667895296	0.4576678523831978	TTGTCTTACATTCAG
chr6	88119986	88119987	chr6:88119987:T:A	rs59540321	T	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	88340093	88340094	chr6:88340094:T:C	rs9359773	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	88489215	88489216	chr6:88489216:C:T	rs35371864	C	T	T	Sox1.mouse_HMG_2	12	1	+	3.3738279994989364	-1.2987591041693185	CAGAGTAGCATTCAA
chr6	88513856	88513857	chr6:88513857:G:A	rs9353574	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	88606715	88606716	chr6:88606716:A:G	rs17795830	A	G	A	Sox1.mouse_HMG_2	6	1	+	5.379119456620896	3.938942034752257	GAAAATAGCATTCAG
chr6	88775897	88775898	chr6:88775898:T:C	rs9353608	T	C	T	Sox1.mouse_HMG_2	11	1	+	6.8661389000479875	-0.04261587926723315	CTGAATAATATTCTG
chr6	88869918	88869919	chr6:88869919:G:A	rs9353629	G	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	89172466	89172467	chr6:89172467:T:C	rs9362622	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	89172487	89172488	chr6:89172488:G:T	rs7775147	G	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	89485779	89485780	chr6:89485780:A:T	rs854872	A	T	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	89689183	89689184	chr6:89689184:G:A	rs6914142	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr6	89877760	89877761	chr6:89877761:C:A	rs660543	C	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	89979310	89979311	chr6:89979311:A:G	rs12664541	A	G	A	Sox1.mouse_HMG_2	5	1	+	6.426625876701694	6.426625876701694	TTGACAAACATTCAC
chr6	89997310	89997311	chr6:89997311:A:G	rs4707585	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr6	90008413	90008414	chr6:90008414:C:T	rs9444726	C	T	C	Sox1.mouse_HMG_2	0	1	-	5.561889726610473	6.5661259592456735	GTGAATATCTTTCTT
chr6	90155457	90155458	chr6:90155458:A:G	rs1158329	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	90227174	90227175	chr6:90227175:C:A	rs206913	C	A	A	Sox1.mouse_HMG_2	14	1	+	7.781074233909879	7.337977211949929	GTGAATAACATTTTC
chr6	90292315	90292316	chr6:90292316:G:A	rs543402108	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr6	90304531	90304532	chr6:90304532:G:A	rs16882645	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	90462955	90462956	chr6:90462956:A:G	rs1144154	A	G	G	Sox1.mouse_HMG_2	6	1	-	5.965673337988902	2.45426377004193	TTCACTTTCATTCAG
chr6	90478556	90478557	chr6:90478557:A:G	rs9451433	A	G	A	Sox1.mouse_HMG_2	0	1	+	2.9745268291371243	1.970290596501922	AGGAACTGCATTCAG
chr6	90700677	90700678	chr6:90700678:C:A	rs1145740	C	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	90709797	90709798	chr6:90709798:A:G	rs138013489	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.053202357213903	-1.8555524221013167	ATGAATAGCAGTTTG
chr6	91097820	91097821	chr6:91097821:A:G	rs9353793	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	91669793	91669794	chr6:91669794:A:G	rs76778281	A	G	A	Sox1.mouse_HMG_2	5	1	-	2.1945099462350486	-4.714244833080171	ATGAATAGCTCTCAC
chr6	91694271	91694272	chr6:91694272:A:C	rs524271	A	C	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr6	91694294	91694295	chr6:91694295:T:C	rs635450	T	C	T	Sox1.mouse_HMG_2	4	1	-	3.7882272336879463	-3.033185535472126	GTGTATAACATTTAG
chr6	92114322	92114323	chr6:92114323:T:A	rs10944563	T	A	T	Sox1.mouse_HMG_2	13	1	-	5.011781893101712	1.8174183399434192	CTGACTTCCTTTCAA
chr6	92300010	92300011	chr6:92300011:G:C	rs12525836	G	C	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	92532547	92532548	chr6:92532548:T:C	rs784062	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	92568694	92568695	chr6:92568695:T:G	rs1927878	T	G	G	Sox1.mouse_HMG_2	4	1	-	3.8687197844795804	1.4866587166126604	ATAAATTCCATTAAC
chr6	92811429	92811430	chr6:92811430:C:A	rs6922609	C	A	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	92849051	92849052	chr6:92849052:A:C	rs1319822	A	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	92849087	92849088	chr6:92849088:A:G	rs12210424	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	93342873	93342874	chr6:93342874:A:C	rs9345351	A	C	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	93621693	93621694	chr6:93621694:G:T	rs73528476	G	T	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	93666286	93666287	chr6:93666287:G:A	rs75853770	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr6	93840798	93840799	chr6:93840799:T:G	rs28642196	T	G	T	Sox1.mouse_HMG_2	11	1	+	4.5437515919975535	-2.3650031873176673	ATAAATTCCAGTCTG
chr6	94131154	94131155	chr6:94131155:A:G	rs596498	A	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	94258999	94259000	chr6:94259000:C:A	rs1468752	C	A	C	Sox1.mouse_HMG_2	12	1	+	4.093411489022846	-2.807037161443519	GTAAATGCCAGTCTT
chr6	94376969	94376970	chr6:94376970:A:G	rs401745	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	94521444	94521445	chr6:94521445:G:C	rs222541	G	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	95169864	95169865	chr6:95169865:T:C	rs36173287	T	C	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	95266928	95266929	chr6:95266929:A:G	rs74219788	A	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	95364513	95364514	chr6:95364514:T:C	rs911401002	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	95575778	95575779	chr6:95575779:A:G	rs6937302	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	95575815	95575816	chr6:95575816:T:A	rs13205922	T	A	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	96187488	96187489	chr6:96187489:C:G	rs13192406	C	G	C	Sox1.mouse_HMG_2	14	1	-	4.637375359110031	4.9158311331750335	AGGAATTACAGTCTG
chr6	96412253	96412254	chr6:96412254:G:A	rs2472880	G	A	A	Sox1.mouse_HMG_2	7	1	-	3.4930885752410368	3.0321441215339298	GTGAATACAATACAC
chr6	96622116	96622117	chr6:96622117:T:C	rs211169	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	97026591	97026592	chr6:97026592:C:G	rs6930620	C	G	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	97160446	97160447	chr6:97160447:C:G	rs774902246	C	G	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	97246347	97246348	chr6:97246348:A:G	rs113417022	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	97437197	97437198	chr6:97437198:G:A	rs200823	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	97850632	97850633	chr6:97850633:G:A	rs112570180	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	97850666	97850667	chr6:97850667:A:G	rs188606208	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	98342920	98342921	chr6:98342921:C:A	rs12196849	C	A	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	98590553	98590554	chr6:98590554:G:A	rs12663996	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	98717289	98717290	chr6:98717290:A:G	rs4129546	A	G	G	Sox1.mouse_HMG_2	12	1	-	3.4397932348558204	8.112380338524076	CTGAATGCCATATAT
chr6	98989689	98989690	chr6:98989690:G:T	rs2747734	G	T	G	Sox1.mouse_HMG_2	7	1	-	3.938840954546688	4.3355256752147575	GGAAATGCCATTCAG
chr6	99137266	99137267	chr6:99137267:T:C	rs56861883	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	99146980	99146981	chr6:99146981:T:C	rs1003242	T	C	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	99255749	99255750	chr6:99255750:C:A	rs58089101	C	A	C	Sox1.mouse_HMG_2	2	1	-	4.278286659575932	-2.618407672046779	GTGAATGGCTTTCTT
chr6	99590563	99590564	chr6:99590564:T:C	rs4142022	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	99790256	99790257	chr6:99790257:A:G	rs6932194	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	99822830	99822831	chr6:99822831:T:C	rs143323879	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	100171781	100171782	chr6:100171782:A:G	rs6908728	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.7167335350507984	-3.1920212442644202	GTCACTGCCATTCTT
chr6	100241488	100241489	chr6:100241489:G:T	rs61068331	G	T	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	100446302	100446303	chr6:100446303:A:G	rs3798490	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	100591402	100591403	chr6:100591403:G:C	rs108422	G	C	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr6	100891101	100891102	chr6:100891102:T:C	rs6919745	T	C	C	Sox1.mouse_HMG_2	14	1	+	6.1585925129145105	5.283980170191774	ATCACTTACAGTCAT
chr6	101020864	101020865	chr6:101020865:C:A	rs1415469	C	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	101387222	101387223	chr6:101387223:A:G	rs77562146	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	101387239	101387240	chr6:101387240:T:C	rs1338161	T	C	C	Sox1.mouse_HMG_2	6	1	-	3.2875941323404123	1.847416710471773	AGGGCTAACATTCAT
chr6	101395541	101395542	chr6:101395542:G:A	rs185334625	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	101395578	101395579	chr6:101395579:A:C	rs569081331	A	C	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	101730976	101730977	chr6:101730977:T:C	rs9322605	T	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	101829133	101829134	chr6:101829134:C:T	rs77365969	C	T	C	Sox1.mouse_HMG_2	0	1	-	7.49763512710254	8.50187135973774	GTGAATCACATTTAT
chr6	102641594	102641595	chr6:102641595:C:A	rs11970397	C	A	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	102814340	102814341	chr6:102814341:T:G	rs36023659	T	G	t	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	103163641	103163642	chr6:103163642:G:A	rs112496394	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	103537120	103537121	chr6:103537121:A:G	rs9485856	A	G	A	Sox1.mouse_HMG_2	6	1	+	2.8183263589417367	1.3781489370730973	CTGATTACCAGTCTC
chr6	103617922	103617923	chr6:103617923:T:C	rs7765535	T	C	C	Sox1.mouse_HMG_2	11	1	+	4.598069863013841	-2.310684916301379	TTGACTGCCATTAAC
chr6	103629777	103629778	chr6:103629778:G:A	rs9377547	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	103687858	103687859	chr6:103687859:G:C	rs72989328	G	C	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	103720549	103720550	chr6:103720550:A:G	rs4604298	A	G	A	Sox1.mouse_HMG_2	11	1	-	4.3135971950751975	-2.595157584240023	TTGAATATCTTTCTA
chr6	103724054	103724055	chr6:103724055:A:G	rs9377570	A	G	G	Sox1.mouse_HMG_2	10	1	-	4.098965393452454	-2.7489761848278262	TGGAATTGAATTCAG
chr6	103849289	103849290	chr6:103849290:A:G	rs9404478	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	103981711	103981712	chr6:103981712:G:A	rs79510861	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	103982747	103982748	chr6:103982748:A:T	rs72998583	A	T	A	Sox1.mouse_HMG_2	13	1	+	7.595950498445943	4.401586945287651	CTGAATGCCAGTTAT
chr6	104322146	104322147	chr6:104322147:C:A	rs433624	C	A	C	Sox1.mouse_HMG_2	11	1	-	4.3519458355246465	11.260700614839868	AGGAATAACATGCAA
chr6	104639651	104639652	chr6:104639652:C:T	rs556222081	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	104700045	104700046	chr6:104700046:A:G	rs79732163	A	G	A	Sox1.mouse_HMG_2	11	1	+	2.438066844073115	2.438066844073115	ATGAAAACCATACAC
chr6	105867445	105867446	chr6:105867446:G:A	rs10457136	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	106421612	106421613	chr6:106421613:T:C	rs1340611	T	C	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	106447362	106447363	chr6:106447363:T:C	rs4945753	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.8073291084906327	-3.1014256708245873	ATGAATAAGACTCAG
chr6	106530914	106530915	chr6:106530915:A:G	rs35843244	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	106618132	106618133	chr6:106618133:T:C	rs9400033	T	C	T	Sox1.mouse_HMG_2	9	1	+	3.008309087922845	3.008309087922845	ATGTATAGCTTTCAT
chr6	106618136	106618137	chr6:106618137:A:G	rs9373883	A	G	a	Sox1.mouse_HMG_2	13	1	+	3.008309087922845	-1.9378085998498031	ATGTATAGCTTTCAT
chr6	106670398	106670399	chr6:106670399:C:T	rs12663120	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	106833834	106833835	chr6:106833835:A:G	rs77992378	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	106966789	106966790	chr6:106966790:C:T	rs990251256	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	107109679	107109680	chr6:107109680:C:G	rs151006311	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr6	107743298	107743299	chr6:107743299:C:T	rs11153079	C	T	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	107766625	107766626	chr6:107766626:T:C	rs4946858	T	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	107819077	107819078	chr6:107819078:C:T	rs17589005	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	107832240	107832241	chr6:107832241:A:G	rs7754063	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	107959474	107959475	chr6:107959475:A:C	rs73504810	A	C	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr6	108030385	108030386	chr6:108030386:G:A	rs9374002	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	108156624	108156625	chr6:108156625:A:G	rs59135983	A	G	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	108184481	108184482	chr6:108184482:A:G	rs79655871	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	108242640	108242641	chr6:108242641:C:A	rs149888849	C	A	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr6	108589867	108589868	chr6:108589868:A:C	rs17532552	A	C	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	108676231	108676232	chr6:108676232:G:A	rs9374040	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	108676236	108676237	chr6:108676237:G:A	rs188395043	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr6	109198962	109198963	chr6:109198963:G:A	rs386696	G	A	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	109205619	109205620	chr6:109205620:G:A	rs378447	G	A	A	Sox1.mouse_HMG_2	8	1	-	9.917063867238065	4.272637176856079	ATGAACAGCATTCAT
chr6	109322894	109322895	chr6:109322895:T:C	rs925513854	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	109322921	109322922	chr6:109322922:A:G	rs77497373	A	G	G	Sox1.mouse_HMG_2	1	1	-	5.142299312727765	0.4983070052345314	ATGACTGCCAATCAA
chr6	109380242	109380243	chr6:109380243:G:A	rs780393897	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.2146328011760326	-1.4307697318401824	GTGCATACAATTCAG
chr6	109632062	109632063	chr6:109632063:G:T	rs12215867	G	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr6	109760414	109760415	chr6:109760415:G:A	rs9481003	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	109819042	109819043	chr6:109819043:C:A	rs149089889	C	A	c	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	110182098	110182099	chr6:110182099:C:A	rs74436730	C	A	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	110390681	110390682	chr6:110390682:C:T	rs2207357	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	110743295	110743296	chr6:110743296:C:T	rs4383853	C	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	111033083	111033084	chr6:111033084:C:A	rs73763497	C	A	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	111074421	111074422	chr6:111074422:C:T	rs56351290	C	T	C	Sox1.mouse_HMG_2	4	1	+	3.4646959189633613	-0.9746557823297891	ATGGCTAGCAGTCAA
chr6	111173888	111173889	chr6:111173889:C:A	rs543072367	C	A	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	111228553	111228554	chr6:111228554:A:G	rs6902442	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	111573218	111573219	chr6:111573219:A:G	rs61149152	A	G	A	Sox1.mouse_HMG_2	4	1	-	7.924281993083732	12.363633694376885	CTGATTTCCATTCAC
chr6	111573786	111573787	chr6:111573787:A:T	rs6922165	A	T	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr6	111597661	111597662	chr6:111597662:G:A	rs174393	G	A	A	Sox1.mouse_HMG_2	2	1	+	4.4243735418301	-0.22102899118611724	AAGAAAACCATTCAG
chr6	111597664	111597665	chr6:111597665:A:C	rs4947128	A	C	A	Sox1.mouse_HMG_2	5	1	+	4.4243735418301	4.4243735418301	AAGAAAACCATTCAG
chr6	111671623	111671624	chr6:111671624:C:T	rs2237255	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	111683922	111683923	chr6:111683923:T:G	rs2237257	T	G	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr6	111705566	111705567	chr6:111705567:G:A	rs9481184	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	111818645	111818646	chr6:111818646:A:C	rs773343087	A	C	A	Sox1.mouse_HMG_2	3	1	+	2.797150697771758	-4.111604081543462	CTGACTAGCTTTCTC
chr6	112047265	112047266	chr6:112047266:G:A	rs11153332	G	A	-	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	112217594	112217595	chr6:112217595:C:T	chr6:112217595:C:T	C	T	C	Sox1.mouse_HMG_2	0	1	+	4.03254288465376	3.7665996908843287	CTAAACACCATTCAC
chr6	112235887	112235888	chr6:112235888:G:C	rs12206703	G	C	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr6	112255008	112255009	chr6:112255009:C:T	rs115382029	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	112636805	112636806	chr6:112636806:G:A	rs77012185	G	A	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	112983700	112983701	chr6:112983701:A:G	rs2127965	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	113073960	113073961	chr6:113073961:C:T	rs76478376	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	113340551	113340552	chr6:113340552:C:T	rs9384864	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	113406127	113406128	chr6:113406128:C:T	rs10484461	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	113492665	113492666	chr6:113492666:C:T	rs9372365	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	113776868	113776869	chr6:113776869:C:T	rs11153443	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	113776890	113776891	chr6:113776891:T:C	rs9481398	T	C	T	Sox1.mouse_HMG_2	7	1	-	10.161616922978814	9.46056210343774	GTAAATTACATTCAC
chr6	113881777	113881778	chr6:113881778:A:G	rs113177884	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	113927156	113927157	chr6:113927157:A:G	rs557753122	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	114042773	114042774	chr6:114042774:G:A	rs12197917	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	114493844	114493845	chr6:114493845:T:G	rs9320495	T	G	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	114565830	114565831	chr6:114565831:T:C	rs1041212	T	C	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	114650342	114650343	chr6:114650343:C:T	rs6906296	C	T	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr6	114651135	114651136	chr6:114651136:T:C	rs9398379	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	114733094	114733095	chr6:114733095:A:G	rs9372406	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	114874703	114874704	chr6:114874704:C:T	rs7741124	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.194371107060243	0.5499444166782553	ATGAATTCCATTATT
chr6	114878346	114878347	chr6:114878347:T:G	rs115379334	T	G	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	114992592	114992593	chr6:114992593:T:C	rs3932658	T	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	115282824	115282825	chr6:115282825:G:C	rs1412035	G	C	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	115332895	115332896	chr6:115332896:T:C	rs6918482	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	115610870	115610871	chr6:115610871:A:C	rs140300384	A	C	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	115811797	115811798	chr6:115811798:G:A	rs74785232	G	A	g	Sox1.mouse_HMG_2	5	1	+	6.530766566735943	6.530766566735943	GTGACGAGCATTCAT
chr6	116008651	116008652	chr6:116008652:A:G	chr6:116008652:A:G	A	G	A	Sox1.mouse_HMG_2	3	1	+	3.551110645465787	-3.3576441338494343	AGGACTGTCATTCTG
chr6	116013019	116013020	chr6:116013020:G:A	rs117229931	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.027078798925329	0.38167626590911363	AGGACTTGCAGTCAC
chr6	116060940	116060941	chr6:116060941:T:C	rs933137283	T	C	G	Sox1.mouse_HMG_2	6	1	-	5.991665011758707	4.551487589890068	CAGAATACCATTTAG
chr6	116248945	116248946	chr6:116248946:G:T	rs957593490	G	T	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	116280443	116280444	chr6:116280444:A:T	rs62423798	A	T	A	Sox1.mouse_HMG_2	1	1	-	4.577007275729084	-0.06698503176414838	ATGAATACTATGCAT
chr6	116313770	116313771	chr6:116313771:T:G	rs12189722	T	G	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	116410920	116410921	chr6:116410921:A:G	rs17196517	A	G	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	116511281	116511282	chr6:116511282:C:A	rs2640886	C	A	A	Sox1.mouse_HMG_2	8	1	+	4.969890146650707	0.12039333113860817	GAGAAAAACATTCAT
chr6	116613472	116613473	chr6:116613473:C:T	rs6937417	C	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	117478796	117478797	chr6:117478797:C:A	rs1395024531	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	117496461	117496462	chr6:117496462:G:A	rs55977400	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.323513083181157	-0.32091360720082973	ATTAATTCCATTCTC
chr6	117548686	117548687	chr6:117548687:C:T	rs9489217	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	117739987	117739988	chr6:117739988:C:T	chr6:117739988:C:T	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	117938862	117938863	chr6:117938863:C:T	rs9401037	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	118096351	118096352	chr6:118096352:G:C	rs9385035	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.337563120312331	-2.5628855301540328	TTAACTCACATTCAC
chr6	118218073	118218074	chr6:118218074:A:G	rs74347865	A	G	a	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	118515526	118515527	chr6:118515527:C:A	chr6:118515527:C:A	C	A	C	Sox1.mouse_HMG_2	7	1	-	7.940952843141502	7.784378488307401	ATGAATTGAATTCTT
chr6	118559476	118559477	chr6:118559477:T:G	rs12198461	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	118618995	118618996	chr6:118618996:A:T	chr6:118618996:A:T	A	T	A	Sox1.mouse_HMG_2	3	1	+	5.120338871578793	-1.7884159077364257	ATGATTTCCATTCTG
chr6	118619015	118619016	chr6:118619016:C:T	rs1302914933	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	119025695	119025696	chr6:119025696:A:T	rs140242896	A	T	A	Sox1.mouse_HMG_2	14	1	-	9.194054017865257	7.876344653182572	TTAAATAACAGTCAT
chr6	119142147	119142148	chr6:119142148:G:A	rs73767260	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	119226625	119226626	chr6:119226626:C:T	rs9489627	C	T	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	119243877	119243878	chr6:119243878:A:G	rs7753492	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	119280689	119280690	chr6:119280690:T:A	rs17442596	T	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr6	119281348	119281349	chr6:119281349:T:C	rs115482058	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	119286368	119286369	chr6:119286369:T:A	rs9481900	T	A	A	Sox1.mouse_HMG_2	1	1	+	4.930049490696502	0.286057183203268	TTAACTGACATTCTT
chr6	119329363	119329364	chr6:119329364:A:G	rs195064	A	G	G	Sox1.mouse_HMG_2	9	1	+	5.93039409109809	-0.9783606882171315	AGGAATAGCAGTCTT
chr6	119728587	119728588	chr6:119728588:C:T	rs77903185	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	120180895	120180896	chr6:120180896:C:T	rs155160	C	T	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	120422046	120422047	chr6:120422047:G:T	rs17082229	G	T	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	120493681	120493682	chr6:120493682:T:C	rs9387801	T	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	120493705	120493706	chr6:120493706:A:G	rs113449615	A	G	a	Sox1.mouse_HMG_2	1	1	-	3.6046034428235005	-1.0393888646697316	GTCACTTCCAGTCAG
chr6	120747215	120747216	chr6:120747216:G:C	rs77795172	G	C	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	120842354	120842355	chr6:120842355:G:A	rs78812131	G	A	g	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	120904073	120904074	chr6:120904074:T:C	rs114612131	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.602785128503491	-2.305969650811728	CTACATAGCATTCAT
chr6	121334970	121334971	chr6:121334971:G:A	rs141141160	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	121365648	121365649	chr6:121365649:G:A	rs7747777	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	121523204	121523205	chr6:121523205:C:A	rs4143301	C	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr6	121597746	121597747	chr6:121597747:A:G	rs9387980	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	121653142	121653143	chr6:121653143:C:T	rs149627031	C	T	c	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr6	121678506	121678507	chr6:121678507:T:G	rs6941787	T	G	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	121774771	121774772	chr6:121774772:A:G	rs62430077	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	121959586	121959587	chr6:121959587:T:G	rs7752132	T	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	122290079	122290080	chr6:122290080:T:A	rs548548	T	A	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	122358497	122358498	chr6:122358498:C:T	rs13218584	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	122390630	122390631	chr6:122390631:G:A	rs137862583	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	122789031	122789032	chr6:122789032:T:C	rs571709037	T	C	T	Sox1.mouse_HMG_2	9	1	+	3.316516795166506	3.316516795166506	TTGAATGTCTTTCTC
chr6	122789037	122789038	chr6:122789038:T:C	rs910863757	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	123306531	123306532	chr6:123306532:T:G	rs9320925	T	G	T	Sox1.mouse_HMG_2	7	1	-	7.843275938066241	7.446591217398171	GAGAATTACATTCTT
chr6	123306549	123306550	chr6:123306550:T:G	rs55991401	T	G	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	123463738	123463739	chr6:123463739:T:G	rs6569347	T	G	G	Sox1.mouse_HMG_2	13	1	-	6.700412414473121	0.37969640534377336	CAGAATTACATTTAT
chr6	123536167	123536168	chr6:123536168:T:A	rs6931021	T	A	G	Sox1.mouse_HMG_2	10	1	+	3.104433207938975	-3.743508370341306	GTGAATGCCATCTAT
chr6	124028238	124028239	chr6:124028239:G:T	rs17086515	G	T	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	124599693	124599694	chr6:124599694:C:G	rs17052134	C	G	C	Sox1.mouse_HMG_2	8	1	+	7.446850043934934	1.7283153813992262	GTGAATATCATTGAA
chr6	124601200	124601201	chr6:124601201:A:G	rs9401756	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	124718401	124718402	chr6:124718402:A:G	rs6923037	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	124868686	124868687	chr6:124868687:T:C	rs60980833	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	124928376	124928377	chr6:124928377:G:A	rs6569403	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	125008466	125008467	chr6:125008467:G:A	rs1931657	G	A	A	Sox1.mouse_HMG_2	7	1	+	5.5646488645497	6.265703684090775	ATGAATCGCATGCAT
chr6	125200191	125200192	chr6:125200192:A:G	rs554004	A	G	A	Sox1.mouse_HMG_2	0	1	+	9.084364561345529	8.080128328710327	ATGAATTGCATTAAT
chr6	125262646	125262647	chr6:125262647:G:A	rs189094595	G	A	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	125262662	125262663	chr6:125262663:A:G	rs3799721	A	G	A	Sox1.mouse_HMG_2	4	1	+	7.370373857871395	0.5489610887113242	ATGAATAATATTCTA
chr6	125443069	125443070	chr6:125443070:A:G	rs77684532	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	125469875	125469876	chr6:125469876:G:C	rs9482661	G	C	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	125555270	125555271	chr6:125555271:G:A	rs56161349	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	125769769	125769770	chr6:125769770:G:T	rs117868697	G	T	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	125781323	125781324	chr6:125781324:T:C	chr6:125781324:T:C	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	125781339	125781340	chr6:125781340:C:G	rs3734635	C	G	G	Sox1.mouse_HMG_2	4	1	+	9.84591839558467	5.406566694291521	GTGACTTGCAGTCAT
chr6	125793609	125793610	chr6:125793610:T:C	rs565191909	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	126266821	126266822	chr6:126266822:G:T	rs9482734	G	T	T	Sox1.mouse_HMG_2	6	1	+	3.6465979606504146	4.245769947777659	ATGACTGCCTGTCAT
chr6	126337442	126337443	chr6:126337443:G:A	rs141833960	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	126715896	126715897	chr6:126715897:C:T	rs10484759	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	126845260	126845261	chr6:126845261:G:A	rs11757289	G	A	A	Sox1.mouse_HMG_2	12	1	-	8.902500909315014	4.229913805646757	ATGAATTACTTTCAC
chr6	127328204	127328205	chr6:127328205:C:T	rs11961994	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	127328238	127328239	chr6:127328239:C:T	rs9372865	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	127333135	127333136	chr6:127333136:C:A	rs11154398	C	A	c	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	128310358	128310359	chr6:128310359:A:G	rs1738272	A	G	a	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	128518132	128518133	chr6:128518133:G:A	rs62426791	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr6	129147142	129147143	chr6:129147143:A:T	rs2279165	A	T	T	Sox1.mouse_HMG_2	5	1	-	4.179637022761656	-2.7291177565535647	CTGACTCCCATTTAC
chr6	129183522	129183523	chr6:129183523:C:A	rs9492260	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	129481976	129481977	chr6:129481977:T:A	rs2784900	T	A	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	129508454	129508455	chr6:129508455:A:G	rs2571571	A	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	129611748	129611749	chr6:129611749:T:C	rs7753754	T	C	C	Sox1.mouse_HMG_2	1	1	-	5.283895041873359	4.979423862794784	TAAAATAGCATTCAA
chr6	129646554	129646555	chr6:129646555:A:T	rs12192821	A	T	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr6	129730606	129730607	chr6:129730607:C:T	rs6899920	C	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	129730779	129730780	chr6:129730780:T:G	rs34699829	T	G	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	129741709	129741710	chr6:129741710:T:C	rs9492364	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.721424355156429	-3.1873304241587914	ATTAAAAACATTCAT
chr6	129775125	129775126	chr6:129775126:C:A	rs773324953	C	A	C	Sox1.mouse_HMG_2	12	1	+	4.739198303997241	-2.161250346469123	CTGTATCTCATTCAT
chr6	129775251	129775252	chr6:129775252:A:T	rs34833653	A	T	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	129844838	129844839	chr6:129844839:A:G	rs1480513	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	129902404	129902405	chr6:129902405:C:T	rs9375676	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	130065825	130065826	chr6:130065826:T:G	rs9375703	T	G	T	Sox1.mouse_HMG_2	11	1	+	3.683823488187001	-3.2249312911282186	CTTACTAGCATTCTT
chr6	130223345	130223346	chr6:130223346:A:T	rs185255819	A	T	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	130223363	130223364	chr6:130223364:T:C	rs4895867	T	C	C	Sox1.mouse_HMG_2	1	1	-	9.884571374436796	9.58010019535822	GAGAATTACATTCAG
chr6	130276754	130276755	chr6:130276755:A:G	rs4897395	A	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	130276773	130276774	chr6:130276774:C:G	rs4897396	C	G	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	130670428	130670429	chr6:130670429:A:G	chr6:130670429:A:G	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	130863834	130863835	chr6:130863835:C:G	rs867707	C	G	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr6	130909542	130909543	chr6:130909543:A:G	rs73617128	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	131185024	131185025	chr6:131185025:C:T	rs1729549	C	T	c	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	131216484	131216485	chr6:131216485:G:A	rs191667577	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	131250301	131250302	chr6:131250302:G:A	rs950852896	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	131765026	131765027	chr6:131765027:G:T	rs1018909047	G	T	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	131819616	131819617	chr6:131819617:C:G	rs73780762	C	G	C	Sox1.mouse_HMG_2	6	1	-	4.973935874537484	2.061698293717758	CTGACTGACATGCAG
chr6	131931603	131931604	chr6:131931604:C:T	rs138348692	C	T	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	131931627	131931628	chr6:131931628:T:C	rs6926009	T	C	T	Sox1.mouse_HMG_2	9	1	-	6.13821685142849	-0.7705379278867299	CTGACTTCCAGTCTG
chr6	132078991	132078992	chr6:132078992:A:C	rs7748412	A	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	132123093	132123094	chr6:132123094:A:G	rs2064086	A	G	G	Sox1.mouse_HMG_2	6	1	-	5.516203608812887	2.004794040865917	GTGACTTACATACAC
chr6	132665916	132665917	chr6:132665917:T:C	rs9375911	T	C	T	Sox1.mouse_HMG_2	9	1	-	3.2005412639556514	-3.708213515359569	ATCAGTTCCATTCAC
chr6	132751510	132751511	chr6:132751511:A:G	rs1883617	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	132951643	132951644	chr6:132951644:A:G	rs9483517	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr6	132971482	132971483	chr6:132971483:G:A	rs422692	G	A	A	Sox1.mouse_HMG_2	14	1	+	7.603185162981024	7.438543915086076	GTGAACATCATTCAG
chr6	133408002	133408003	chr6:133408003:G:T	rs189129487	G	T	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	133408738	133408739	chr6:133408739:C:T	rs148476122	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	133671652	133671653	chr6:133671653:T:C	rs9483604	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.026105614258988	-3.882649165056232	ATGAAAACCATTCCC
chr6	133709524	133709525	chr6:133709525:T:C	rs6904690	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	133777811	133777812	chr6:133777812:T:C	rs574431929	T	C	T	Sox1.mouse_HMG_2	10	1	+	4.812026025832157	-2.0359155524481243	AGGTATATCATTCAT
chr6	133899588	133899589	chr6:133899589:C:G	rs2327434	C	G	C	Sox1.mouse_HMG_2	12	1	+	3.6283230595311884	-3.272125590935175	GTCAATCCCAGTCAT
chr6	134247449	134247450	chr6:134247450:A:G	rs988485030	A	G	A	Sox1.mouse_HMG_2	13	1	-	5.665756317308165	2.53940386133711	GTGAATGCCATTTTG
chr6	134247641	134247642	chr6:134247642:T:A	rs192669181	T	A	T	Sox1.mouse_HMG_2	7	1	-	4.2856435552118715	3.4280143808366943	TCGAGTTACATTCAT
chr6	134247650	134247651	chr6:134247651:C:T	rs17063566	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	134513119	134513120	chr6:134513120:T:C	rs4243447	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.11352907792769	-0.5304632295655435	CTGTCTAGCAGTCAT
chr6	134537472	134537473	chr6:134537473:A:G	rs7774306	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	134575389	134575390	chr6:134575390:C:T	rs228435	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	134590473	134590474	chr6:134590474:T:G	rs113771773	T	G	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	134667423	134667424	chr6:134667424:T:C	rs4243448	T	C	C	Sox1.mouse_HMG_2	13	1	-	3.354865435615958	-1.5912522521566899	AGGAATGACATGCAC
chr6	134704614	134704615	chr6:134704615:A:G	rs9389206	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	134738419	134738420	chr6:134738420:T:C	rs9389215	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.756694217035146	0.11270190954191275	TTGAAGATCATTCTC
chr6	134744265	134744266	chr6:134744266:C:G	rs9385700	C	G	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	134814578	134814579	chr6:134814579:C:T	rs9376067	C	T	T	Sox1.mouse_HMG_2	14	1	-	4.152182056779811	3.987540808884863	CAGAATAACATCCAG
chr6	134935356	134935357	chr6:134935357:G:C	rs6569982	G	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	135210661	135210662	chr6:135210662:T:C	rs210948	T	C	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	135640549	135640550	chr6:135640550:C:G	rs72982200	C	G	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	136174105	136174106	chr6:136174106:A:C	rs141641223	A	C	A	Sox1.mouse_HMG_2	0	1	+	3.48938655165799	2.8205103459396312	ATGACCTACAGTCAG
chr6	136181488	136181489	chr6:136181489:C:T	rs9402793	C	T	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr6	136508891	136508892	chr6:136508892:T:C	rs142027878	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	136511023	136511024	chr6:136511024:T:C	rs6933027	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr6	136720226	136720227	chr6:136720227:G:A	rs1028565	G	A	A	Sox1.mouse_HMG_2	12	1	-	5.585352366374264	0.9127652627060084	CTGAGTTTCAGTCAT
chr6	136740944	136740945	chr6:136740945:G:A	rs911179	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	136983289	136983290	chr6:136983290:T:C	rs947733	T	C	C	Sox1.mouse_HMG_2	13	1	-	4.067560018158085	-0.878557669614563	CAGAATTCCATACAT
chr6	137013093	137013094	chr6:137013094:T:G	rs78064273	T	G	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	137259061	137259062	chr6:137259062:C:T	rs7774608	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	137340970	137340971	chr6:137340971:G:C	rs11154923	G	C	G	Sox1.mouse_HMG_2	13	1	+	3.2884005455375913	1.9138022241808925	GTGAATGACACTCGT
chr6	137342611	137342612	chr6:137342612:G:C	rs17199398	G	C	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	137678824	137678825	chr6:137678825:T:C	rs35931823	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	137680764	137680765	chr6:137680765:A:T	rs542829	A	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	137717828	137717829	chr6:137717829:G:A	rs57537582	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	137793999	137794000	chr6:137794000:A:C	rs113531891	A	C	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	137819984	137819985	chr6:137819985:G:A	rs117612537	G	A	g	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	138219600	138219601	chr6:138219601:A:G	rs17067263	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	138254964	138254965	chr6:138254965:C:T	rs13199966	C	T	C	Sox1.mouse_HMG_2	1	1	+	5.664623026326933	10.308615333820166	ACGAATACCAGTCTC
chr6	138444130	138444131	chr6:138444131:C:G	rs1928276	C	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	138493891	138493892	chr6:138493892:C:T	rs143296558	C	T	C	Sox1.mouse_HMG_2	1	1	+	7.851655462906128	12.495647770399362	ACGAATGCCATTCTT
chr6	138573942	138573943	chr6:138573943:A:T	rs114775932	A	T	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	138957541	138957542	chr6:138957542:G:C	rs9321686	G	C	G	Sox1.mouse_HMG_2	0	1	-	5.314701506033853	4.979341479117008	CTGAATGACATCCTT
chr6	139080734	139080735	chr6:139080735:G:A	rs10872503	G	A	G	Sox1.mouse_HMG_2	14	1	-	4.410519664714605	5.285132007437341	AATAATAGCATTCAC
chr6	139219458	139219459	chr6:139219459:T:C	rs183180242	T	C	T	Sox1.mouse_HMG_2	0	1	-	2.842684433522473	1.8384482008872705	ATGATTTGCATTCCT
chr6	139395900	139395901	chr6:139395901:A:G	rs9403065	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	139406721	139406722	chr6:139406722:T:C	rs74539375	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	139638754	139638755	chr6:139638755:C:T	rs6917394	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr6	139755440	139755441	chr6:139755441:C:A	rs9376459	C	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr6	139851352	139851353	chr6:139851353:G:A	rs7750105	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	139851375	139851376	chr6:139851376:T:C	rs3918473	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr6	139927217	139927218	chr6:139927218:T:C	rs76378876	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	139978103	139978104	chr6:139978104:T:C	chr6:139978104:T:C	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	139978403	139978404	chr6:139978404:T:C	rs9495620	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr6	140486421	140486422	chr6:140486422:A:G	rs150847579	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr6	140621412	140621413	chr6:140621413:C:T	rs7773113	C	T	c	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	141238968	141238969	chr6:141238969:G:A	rs6928489	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.330884284602985	0.6582971809347297	TTGTATCACATTCAT
chr6	142112827	142112828	chr6:142112828:G:T	rs369532260	G	T	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr6	142146436	142146437	chr6:142146437:A:T	rs225623	A	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	142236280	142236281	chr6:142236281:C:A	rs225735	C	A	A	Sox1.mouse_HMG_2	8	1	+	3.560433160155756	-1.2890636553563424	TTGATTGGCATTCTC
chr6	142242264	142242265	chr6:142242265:A:G	rs7761913	A	G	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr6	142415181	142415182	chr6:142415182:T:C	rs182040723	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.010712183623096	4.13609984090036	TTGAAAAACATTTAT
chr6	142820554	142820555	chr6:142820555:A:G	rs117346551	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	142823079	142823080	chr6:142823080:A:G	rs114162504	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	142839933	142839934	chr6:142839934:G:A	rs198651	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr6	143160454	143160455	chr6:143160455:C:T	rs9403452	C	T	C	Sox1.mouse_HMG_2	12	1	+	2.90355670828811	-1.7690303953801447	GTGACTAGCTGTCAC
chr6	143329748	143329749	chr6:143329749:A:T	rs9399438	A	T	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	143566774	143566775	chr6:143566775:C:A	rs9484767	C	A	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	143566790	143566791	chr6:143566791:C:T	rs9484768	C	T	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	143598696	143598697	chr6:143598697:T:C	rs535096942	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.878935600653	0.9328179128803514	CTGGATAACAGTCAA
chr6	143697601	143697602	chr6:143697602:A:G	rs112282354	A	G	A	Sox1.mouse_HMG_2	1	1	-	3.857519118654008	-0.786473188839225	ATGATTAACACTCAT
chr6	143986788	143986789	chr6:143986789:C:T	rs12660374	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr6	144263825	144263826	chr6:144263826:A:G	rs7747486	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.808226302024225	-2.1005284772909953	GTGATTTTCATTCTT
chr6	144597755	144597756	chr6:144597756:G:A	rs1918745	G	A	A	Sox1.mouse_HMG_2	2	1	+	4.864782730787504	0.2193801977712858	GTGAAGCCCATTCAT
chr6	144886816	144886817	chr6:144886817:C:T	rs62429687	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.865792325282869	1.2203897922666536	ATGACTCTCATTCTC
chr6	144954093	144954094	chr6:144954094:G:A	rs9390264	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	145035088	145035089	chr6:145035089:A:T	rs17074743	A	T	A	Sox1.mouse_HMG_2	9	1	+	3.611317521844102	-3.2974372574711177	GTGAAAAAAATTCAG
chr6	145110519	145110520	chr6:145110520:G:T	rs621529	G	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	145408353	145408354	chr6:145408354:T:C	rs9376932	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr6	145483247	145483248	chr6:145483248:C:T	rs12197582	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	145498369	145498370	chr6:145498370:C:T	rs430003	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr6	145669857	145669858	chr6:145669858:C:T	rs980372467	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	145669892	145669893	chr6:145669893:T:C	rs702306	T	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	146850363	146850364	chr6:146850364:G:A	rs9322078	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	146895415	146895416	chr6:146895416:T:A	rs2224906	T	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr6	146926013	146926014	chr6:146926014:G:A	rs77646177	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	146937169	146937170	chr6:146937170:G:A	rs12662569	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	147064171	147064172	chr6:147064172:G:A	rs73588137	G	A	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	147177497	147177498	chr6:147177498:T:A	rs76681091	T	A	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	147209944	147209945	chr6:147209945:G:T	rs2786189	G	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	147285023	147285024	chr6:147285024:A:G	rs77912184	A	G	A	Sox1.mouse_HMG_2	14	1	-	10.515370343766199	9.640758001043464	CAGAATTTCATTCAT
chr6	147395360	147395361	chr6:147395361:G:C	rs886578867	G	C	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	147707759	147707760	chr6:147707760:T:C	rs9390493	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	147974891	147974892	chr6:147974892:G:A	rs17589656	G	A	G	Sox1.mouse_HMG_2	0	1	-	7.393842960968631	7.1278997671991995	CTGAAGTCCATTCAA
chr6	148134688	148134689	chr6:148134689:A:T	rs1934798	A	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	148155028	148155029	chr6:148155029:C:T	rs1417393	C	T	C	Sox1.mouse_HMG_2	0	1	+	4.432284249586525	4.166341055817092	CTGATTTTCAGTCAG
chr6	148204084	148204085	chr6:148204085:T:A	rs139045278	T	A	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	148235718	148235719	chr6:148235719:T:A	rs9497977	T	A	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	148274088	148274089	chr6:148274089:T:C	rs17633059	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	148358600	148358601	chr6:148358601:A:G	rs2495956	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	148463815	148463816	chr6:148463816:G:A	rs116835823	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr6	148608950	148608951	chr6:148608951:C:A	rs2208833	C	A	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	148617171	148617172	chr6:148617172:C:T	rs17078502	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	148617734	148617735	chr6:148617735:A:G	rs76342569	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	148617739	148617740	chr6:148617740:T:C	rs147633353	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	148629401	148629402	chr6:148629402:A:G	rs6909491	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	148677655	148677656	chr6:148677656:G:T	rs9498111	G	T	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	148677941	148677942	chr6:148677942:G:C	rs9485311	G	C	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	148704392	148704393	chr6:148704393:C:T	rs75082902	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	148945739	148945740	chr6:148945740:C:T	rs6941730	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	149060438	149060439	chr6:149060439:A:T	rs142896637	A	T	A	Sox1.mouse_HMG_2	13	1	+	2.8794063835886523	-0.3149571695696399	GTGACACACATTCAT
chr6	149076388	149076389	chr6:149076389:T:C	rs78956649	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	149119737	149119738	chr6:149119738:A:G	rs4308587	A	G	A	Sox1.mouse_HMG_2	7	1	+	8.519490748486158	7.818435928945082	TTGACTTAAATTCAT
chr6	149182422	149182423	chr6:149182423:G:A	rs182606398	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	149206531	149206532	chr6:149206532:C:A	rs607071	C	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	149214039	149214040	chr6:149214040:A:G	rs116529583	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	149289472	149289473	chr6:149289473:C:T	rs75912148	C	T	C	Sox1.mouse_HMG_2	10	1	-	3.3019477782145907	-0.7933962843405927	CTGACTCACAGTCTC
chr6	149289502	149289503	chr6:149289503:T:A	rs17085250	T	A	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	149314663	149314664	chr6:149314664:T:C	rs201641387	T	C	t	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	149418663	149418664	chr6:149418664:A:G	rs9322179	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	149423822	149423823	chr6:149423823:C:T	rs118011253	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	149484815	149484816	chr6:149484816:C:T	rs77825679	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	149716435	149716436	chr6:149716436:A:G	rs4870529	A	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr6	149716437	149716438	chr6:149716438:C:T	rs13205080	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	149977403	149977404	chr6:149977404:G:C	rs7742307	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	149977406	149977407	chr6:149977407:G:C	rs74542131	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	150051758	150051759	chr6:150051759:C:T	rs10428753	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	150071264	150071265	chr6:150071265:A:G	rs115367760	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	150113582	150113583	chr6:150113583:G:A	rs9479698	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	150169780	150169781	chr6:150169781:A:G	rs9397708	A	G	A	Sox1.mouse_HMG_2	9	1	+	9.614596120184007	2.7058413408687882	ATGACTATCATTTAT
chr6	150299996	150299997	chr6:150299997:A:G	rs9371908	A	G	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr6	150301374	150301375	chr6:150301375:C:T	rs9480183	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	150329220	150329221	chr6:150329221:A:G	rs78038575	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	150721768	150721769	chr6:150721769:G:A	rs6940569	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	150926891	150926892	chr6:150926892:T:C	rs4869700	T	C	T	Sox1.mouse_HMG_2	6	1	+	4.258508601821778	0.7470990338748068	AAGAAGTACATTCAC
chr6	150940402	150940403	chr6:150940403:G:A	rs4869959	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	150996894	150996895	chr6:150996895:T:C	rs79112577	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr6	151056920	151056921	chr6:151056921:T:C	rs117922034	T	C	C	Sox1.mouse_HMG_2	6	1	-	5.099745665548684	3.659568243680045	CTGAAAAAAATTCAT
chr6	151057214	151057215	chr6:151057215:C:G	rs6934853	C	G	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr6	151180414	151180415	chr6:151180415:G:A	rs1009161	G	A	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr6	151294590	151294591	chr6:151294591:A:G	rs1124264	A	G	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	151457306	151457307	chr6:151457307:A:G	rs78376808	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	151659556	151659557	chr6:151659557:A:G	rs1771351	A	G	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	151706819	151706820	chr6:151706820:T:C	rs851980	T	C	T	Sox1.mouse_HMG_2	4	1	-	13.40434492510983	6.582932155949759	CTGAATAGCAGTCAT
chr6	151900725	151900726	chr6:151900726:C:G	rs9383594	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr6	152485870	152485871	chr6:152485871:T:C	rs9397514	T	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr6	152775367	152775368	chr6:152775368:G:T	rs1410489	G	T	G	Sox1.mouse_HMG_2	7	1	-	5.733313320957044	6.129998041625114	TGGAATTCCATTTAT
chr6	152859207	152859208	chr6:152859208:C:T	rs9371640	C	T	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	152859208	152859209	chr6:152859209:C:T	rs561558	C	T	C	Sox1.mouse_HMG_2	14	1	-	4.164746945916637	4.000105698021689	AGGAATTGGATTCAG
chr6	152916140	152916141	chr6:152916141:A:C	rs9397568	A	C	C	Sox1.mouse_HMG_2	6	1	+	5.0500001946027835	0.6975851919144186	ATGACTAACATTATT
chr6	153210082	153210083	chr6:153210083:G:A	rs34744479	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	153367771	153367772	chr6:153367772:C:T	rs1221922	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr6	153684841	153684842	chr6:153684842:C:T	rs2350396	C	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	154140138	154140139	chr6:154140139:T:C	rs12660296	T	C	T	Sox1.mouse_HMG_2	9	1	-	8.852224126429912	1.9434693471146904	CTGACTCCCATTCAC
chr6	154245607	154245608	chr6:154245608:G:T	rs11155954	G	T	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	154247040	154247041	chr6:154247041:G:C	rs9322453	G	C	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	154262244	154262245	chr6:154262245:T:C	rs7761411	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr6	154262266	154262267	chr6:154262267:A:G	rs7757439	A	G	A	Sox1.mouse_HMG_2	1	1	-	7.45039306714462	2.806400759651384	ATGAATTCTATTCTT
chr6	154276932	154276933	chr6:154276933:G:A	rs17227925	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	154302071	154302072	chr6:154302072:C:A	rs73571021	C	A	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	154418465	154418466	chr6:154418466:C:G	rs9479841	C	G	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr6	154467617	154467618	chr6:154467618:C:A	rs4538722	C	A	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	155016544	155016545	chr6:155016545:T:G	rs73001055	T	G	-	Sox1.mouse_HMG_2	14	1	-	5.490253511423933	5.933350533383883	GTAAATACCATTTAA
chr6	155037514	155037515	chr6:155037515:T:C	rs4457166	T	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr6	155055135	155055136	chr6:155055136:C:T	rs9397770	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	155277542	155277543	chr6:155277543:A:C	rs6931617	A	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr6	155282536	155282537	chr6:155282537:A:G	rs12216139	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr6	155647036	155647037	chr6:155647037:T:C	rs1353754	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr6	155887722	155887723	chr6:155887723:T:G	rs61261563	T	G	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	156551674	156551675	chr6:156551675:G:A	rs73571206	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	156564788	156564789	chr6:156564789:G:A	rs112573254	G	A	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	156564804	156564805	chr6:156564805:G:T	rs34579719	G	T	G	Sox1.mouse_HMG_2	14	1	-	4.729412274257814	4.286315252297864	TCAAATTTCATTCAC
chr6	156564822	156564823	chr6:156564823:T:C	rs79713442	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	156595619	156595620	chr6:156595620:T:G	rs2767582	T	G	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr6	156617293	156617294	chr6:156617294:C:A	rs774691452	C	A	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	156791034	156791035	chr6:156791035:A:C	rs9372015	A	C	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	156845307	156845308	chr6:156845308:C:T	rs287899	C	T	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	156862917	156862918	chr6:156862918:A:T	rs12212399	A	T	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr6	156868621	156868622	chr6:156868622:A:T	rs12213563	A	T	A	Sox1.mouse_HMG_2	3	1	+	3.9813396419319917	-2.9274151373832287	TTCAGTACCATTCAT
chr6	157013384	157013385	chr6:157013385:T:C	rs9478745	T	C	T	Sox1.mouse_HMG_2	14	1	+	2.7432054389251497	1.868593096202414	CTTAGTACCATTCAT
chr6	157089233	157089234	chr6:157089234:A:G	rs77476846	A	G	A	Sox1.mouse_HMG_2	12	1	-	4.741815417480336	9.414402521148594	GTCAATTACATTTAC
chr6	157432626	157432627	chr6:157432627:T:C	rs17165322	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	157483277	157483278	chr6:157483278:T:C	rs150664548	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	157580092	157580093	chr6:157580093:G:C	rs2217446	G	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	157824061	157824062	chr6:157824062:A:G	chr6:157824062:A:G	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	157882555	157882556	chr6:157882556:G:A	rs2746219	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	157946190	157946191	chr6:157946191:A:G	rs9365621	A	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr6	157994649	157994650	chr6:157994650:C:T	rs188078173	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr6	158211675	158211676	chr6:158211676:A:G	rs9366023	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	158259649	158259650	chr6:158259650:A:G	rs9459828	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	158311786	158311787	chr6:158311787:T:G	rs9456285	T	G	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr6	158354299	158354300	chr6:158354300:A:G	rs705953	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr6	158371228	158371229	chr6:158371229:C:A	rs11756453	C	A	C	Sox1.mouse_HMG_2	12	1	+	6.576277744288206	-0.32417090617815714	TTGAGTAACATTCTT
chr6	158465697	158465698	chr6:158465698:C:T	rs140465978	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	158465709	158465710	chr6:158465710:T:C	rs11755760	T	C	T	Sox1.mouse_HMG_2	0	1	+	8.651019446194049	8.916962639963481	TTGAATTACAGTCTG
chr6	158562137	158562138	chr6:158562138:T:G	rs73012188	T	G	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	158605341	158605342	chr6:158605342:G:A	rs762469850	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	158605346	158605347	chr6:158605347:T:C	rs16900870	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	158660396	158660397	chr6:158660397:C:T	rs4709242	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	158911175	158911176	chr6:158911176:G:A	rs76100675	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr6	158960099	158960100	chr6:158960100:G:A	rs10945583	G	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr6	159012240	159012241	chr6:159012241:A:G	rs117599227	A	G	a	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr6	159017937	159017938	chr6:159017938:G:C	rs777126642	G	C	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	159048479	159048480	chr6:159048480:G:C	rs1054091	G	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr6	159110811	159110812	chr6:159110812:T:G	rs7754714	T	G	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr6	159182467	159182468	chr6:159182468:T:C	rs73593351	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	159578153	159578154	chr6:159578154:G:T	rs10945621	G	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr6	159578190	159578191	chr6:159578191:A:G	rs12194439	A	G	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	159717843	159717844	chr6:159717844:A:C	rs2475565	A	C	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	159729802	159729803	chr6:159729803:C:T	rs6929102	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr6	160191647	160191648	chr6:160191648:C:A	rs9457857	C	A	c	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	160198647	160198648	chr6:160198648:T:A	rs3912160	T	A	T	Sox1.mouse_HMG_2	1	1	+	6.892409762421981	2.248417454928747	TTGAATTTCAATCAG
chr6	160294825	160294826	chr6:160294826:C:A	rs3120152	C	A	c	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	160315646	160315647	chr6:160315647:C:A	rs415148	C	A	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr6	160437938	160437939	chr6:160437939:G:T	rs2457012	G	T	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr6	160596087	160596088	chr6:160596088:G:T	rs9456552	G	T	.	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr6	161011951	161011952	chr6:161011952:C:T	rs686392	C	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr6	161032361	161032362	chr6:161032362:A:G	rs4709486	A	G	G	Sox1.mouse_HMG_2	10	1	-	2.6558634287700027	-4.192078149510278	CTTGATACCATTCAT
chr6	161272605	161272606	chr6:161272606:A:T	rs6930587	A	T	T	Sox1.mouse_HMG_2	7	1	+	6.23844908782436	5.380819913449184	CTGAATAACAGTTTT
chr6	161284853	161284854	chr6:161284854:A:C	rs404204	A	C	A	Sox1.mouse_HMG_2	3	1	+	5.056244318785921	-1.8525104605293001	CTGAATTTCCTTCTT
chr6	161369671	161369672	chr6:161369672:C:T	rs537335440	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	161434823	161434824	chr6:161434824:T:C	rs9355900	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	161583698	161583699	chr6:161583699:G:A	rs994465	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	161632202	161632203	chr6:161632203:A:G	rs9456692	A	G	A	Sox1.mouse_HMG_2	7	1	-	5.064788976068012	5.525733429775119	GTGACTATCATTAAA
chr6	161814818	161814819	chr6:161814819:G:A	rs3016540	G	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr6	162086842	162086843	chr6:162086843:T:C	rs1893550	T	C	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	162099830	162099831	chr6:162099831:A:T	rs189835959	A	T	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr6	162230764	162230765	chr6:162230765:T:A	rs6910505	T	A	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	162243331	162243332	chr6:162243332:T:G	rs2023068	T	G	G	Sox1.mouse_HMG_2	5	1	+	5.143944426673039	-1.7648103526421814	TCAAATTACATTCAA
chr6	162556824	162556825	chr6:162556825:C:T	rs79575917	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	162854653	162854654	chr6:162854654:A:G	rs117786524	A	G	A	Sox1.mouse_HMG_2	13	1	+	8.054996210707383	3.1088785229347344	GTAACTGACATTCAT
chr6	163066447	163066448	chr6:163066448:G:A	rs566169	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	163181948	163181949	chr6:163181949:C:T	rs138673178	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr6	163309301	163309302	chr6:163309302:C:A	rs11757855	C	A	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	163367968	163367969	chr6:163367969:C:G	chr6:163367969:C:G	C	G	C	Sox1.mouse_HMG_2	2	1	+	9.16757372928575	14.560190664132188	CTCAATGTCATTCAT
chr6	163680129	163680130	chr6:163680130:A:G	rs78158197	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr6	163739506	163739507	chr6:163739507:A:C	rs141987439	A	C	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	164066885	164066886	chr6:164066886:T:G	rs206688	T	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr6	164109835	164109836	chr6:164109836:A:G	rs6931934	A	G	A	Sox1.mouse_HMG_2	3	1	-	4.215976802144568	4.215976802144568	GTGTCTGGCATTCAC
chr6	164228317	164228318	chr6:164228318:G:C	rs12175277	G	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	164882578	164882579	chr6:164882579:A:G	rs9347939	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr6	164890318	164890319	chr6:164890319:G:C	rs1511081	G	C	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	165053400	165053401	chr6:165053401:A:G	rs9347983	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr6	165228032	165228033	chr6:165228033:G:A	rs148918038	G	A	G	Sox1.mouse_HMG_2	10	1	+	2.10310941220932	-1.9922346503458634	CTGACTGCCCGTCAC
chr6	165626986	165626987	chr6:165626987:G:C	rs4709081	G	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	165700728	165700729	chr6:165700729:T:C	rs9355545	T	C	C	Sox1.mouse_HMG_2	0	1	+	11.21841214339724	11.484355337166674	TTGAATAGCATTTAT
chr6	165767618	165767619	chr6:165767619:T:C	rs73030277	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.351228689470954	-2.5575260898442678	CAGAATTGCATTCCT
chr6	165783750	165783751	chr6:165783751:A:G	rs9364815	A	G	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	165890321	165890322	chr6:165890322:C:A	rs11754381	C	A	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr6	165890347	165890348	chr6:165890348:T:C	rs9365935	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	166010967	166010968	chr6:166010968:C:T	rs300145	C	T	c	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr6	166068976	166068977	chr6:166068977:C:T	rs1900055	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	166146012	166146013	chr6:166146013:G:C	rs56110996	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr6	166432169	166432170	chr6:166432170:C:T	rs77156971	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	166513466	166513467	chr6:166513467:A:T	rs384502	A	T	A	Sox1.mouse_HMG_2	5	1	-	4.072263137127853	-2.836491642187368	TTGAATTGCATGCTC
chr6	166573278	166573279	chr6:166573279:A:G	rs11755586	A	G	a	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr6	166813751	166813752	chr6:166813752:G:A	rs1099648	G	A	G	Sox1.mouse_HMG_2	4	1	-	2.900461824344213	-1.538889876948938	ATGACTGGCATCCTT
chr6	166855670	166855671	chr6:166855671:T:A	rs9355601	T	A	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr6	167058362	167058363	chr6:167058363:A:C	rs6456151	A	C	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr6	167106633	167106634	chr6:167106634:C:T	rs55739710	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	167106634	167106635	chr6:167106635:G:A	rs111909252	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr6	167106680	167106681	chr6:167106681:C:A	rs192594775	C	A	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr6	167106681	167106682	chr6:167106682:A:G	rs184584230	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr6	167275405	167275406	chr6:167275406:C:A	rs73257114	C	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	167284618	167284619	chr6:167284619:A:C	rs9457295	A	C	a	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr6	167688495	167688496	chr6:167688496:G:A	rs62426007	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr6	167711461	167711462	chr6:167711462:T:C	rs487423	T	C	T	Sox1.mouse_HMG_2	10	1	+	2.409879254631759	-4.438062323648523	CTGAATGACATGCGG
chr6	167735941	167735942	chr6:167735942:T:C	rs473228	T	C	C	Sox1.mouse_HMG_2	4	1	-	4.099079653674418	-2.7223331154856534	ATGAATAATATCCAC
chr6	167745587	167745588	chr6:167745588:G:A	rs990617187	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr6	167765603	167765604	chr6:167765604:T:C	rs141333134	T	C	T	Sox1.mouse_HMG_2	1	1	-	4.170739390534601	3.866268211456026	GAGACTTTCAGTCAC
chr6	167932585	167932586	chr6:167932586:C:T	rs114428063	C	T	C	Sox1.mouse_HMG_2	6	1	-	3.1354231359828133	4.575600557851454	CTGTATGGCATTTAT
chr6	168121165	168121166	chr6:168121166:C:A	rs4708654	C	A	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr6	168277896	168277897	chr6:168277897:A:G	rs10945490	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	168319243	168319244	chr6:168319244:C:T	rs4292501	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr6	168439214	168439215	chr6:168439215:C:G	rs59441818	C	G	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr6	168486652	168486653	chr6:168486653:C:T	rs12200852	C	T	C	Sox1.mouse_HMG_2	7	1	-	2.6173840909442343	3.3184389104853103	GTGAATCGCAGTCGG
chr6	168534470	168534471	chr6:168534471:C:T	rs62424687	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr6	168568890	168568891	chr6:168568891:A:T	rs2092937	A	T	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr6	168581003	168581004	chr6:168581004:A:G	rs9455665	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	168602086	168602087	chr6:168602087:T:C	rs2880405	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr6	168603508	168603509	chr6:168603509:T:C	rs12530061	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr6	168613052	168613053	chr6:168613053:G:T	rs61369672	G	T	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr6	168742618	168742619	chr6:168742619:C:T	rs909507	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr6	168796254	168796255	chr6:168796255:G:A	rs56756239	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr6	168861277	168861278	chr6:168861278:C:T	rs73037396	C	T	C	Sox1.mouse_HMG_2	12	1	+	6.288167506524185	1.6155804028559293	CTGAATCCCATTCGC
chr6	168861282	168861283	chr6:168861283:C:A	rs73037400	C	A	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	168870014	168870015	chr6:168870015:T:C	rs67226616	T	C	T	Sox1.mouse_HMG_2	10	1	+	3.1252185427881933	-3.722723035492086	GTGAAAGGCATTCTG
chr6	168904671	168904672	chr6:168904672:A:G	rs10945335	A	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr6	168915732	168915733	chr6:168915733:A:C	rs4235907	A	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr6	168944033	168944034	chr6:168944034:C:T	rs7760037	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr6	168967654	168967655	chr6:168967655:T:G	rs17181376	T	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr6	169111795	169111796	chr6:169111796:G:A	rs35641273	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr6	169172944	169172945	chr6:169172945:G:T	rs146999417	G	T	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr6	169247934	169247935	chr6:169247935:T:C	rs11756439	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.5760314330948555	-1.2453813360652175	ATAAACACCATTCAT
chr6	169591691	169591692	chr6:169591692:G:C	rs2867157	G	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr6	169628740	169628741	chr6:169628741:G:A	rs935146586	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr6	169923433	169923434	chr6:169923434:C:T	rs879088426	C	T	c	Sox1.mouse_HMG_2	7	1	+	4.042259239025601	3.5813147853184946	CAGAATACCATTGAC
chr6	169934394	169934395	chr6:169934395:C:T	rs905052600	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr6	169935696	169935697	chr6:169935697:C:T	rs36197147	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr6	170043363	170043364	chr6:170043364:C:A	rs9460107	C	A	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr6	170127529	170127530	chr6:170127530:C:T	rs117637904	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr6	170127530	170127531	chr6:170127531:G:A	rs78515075	G	A	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr6	170138126	170138127	chr6:170138127:T:C	rs3013267	T	C	T	Sox1.mouse_HMG_2	11	1	+	3.557352702075133	-3.3514020772400865	AGGAAATCCATTCAC
chr6	170226191	170226192	chr6:170226192:G:A	rs1027199931	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr6	170231950	170231951	chr6:170231951:A:G	rs7770638	A	G	A	Sox1.mouse_HMG_2	7	1	+	5.918923054788859	5.217868235247783	TTGAATCACATTCCT
chr7	44405	44406	chr7:44406:T:C	rs147520918	T	C	-	Sox1.mouse_HMG_2	9	1	-	3.0335187272879907	-3.875236052027228	CTGCATACTATTCAC
chr7	44407	44408	chr7:44408:G:A	rs12673588	G	A	-	Sox1.mouse_HMG_2	7	1	-	3.0335187272879907	2.5725742735808845	CTGCATACTATTCAC
chr7	148816	148817	chr7:148817:C:G	rs6970236	C	G	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr7	307739	307740	chr7:307740:C:G	rs36144245	C	G	g	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	380967	380968	chr7:380968:A:G	rs140032324	A	G	a	Sox1.mouse_HMG_2	0	1	+	2.133696745200109	1.1294605125649082	ATGAACAGCCTTCAC
chr7	625445	625446	chr7:625446:A:G	rs150687728	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	831818	831819	chr7:831819:T:G	rs4719500	T	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr7	928801	928802	chr7:928802:C:T	rs10251845	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	1020651	1020652	chr7:1020652:C:T	rs11763020	C	T	c	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	1155834	1155835	chr7:1155835:G:C	rs112989644	G	C	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	1185231	1185232	chr7:1185232:G:A	rs80291942	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr7	1232186	1232187	chr7:1232187:C:A	rs554229908	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	1277675	1277676	chr7:1277676:C:G	rs2690261	C	G	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	1281187	1281188	chr7:1281188:G:A	rs11979972	G	A	-	Sox1.mouse_HMG_2	12	1	-	2.4238256252715615	-2.248761478396693	CTGACCTCCAGTCAG
chr7	1521587	1521588	chr7:1521588:C:G	rs35683430	C	G	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	1681177	1681178	chr7:1681178:G:T	rs2178378	G	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr7	1847088	1847089	chr7:1847089:T:A	rs6977733	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	2354657	2354658	chr7:2354658:C:G	rs569784120	C	G	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	2354660	2354661	chr7:2354661:C:T	rs2301942	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr7	2354680	2354681	chr7:2354681:C:G	rs2301943	C	G	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr7	2354696	2354697	chr7:2354697:A:T	rs77477547	A	T	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	2468705	2468706	chr7:2468706:A:G	rs34623776	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	2571777	2571778	chr7:2571778:G:A	rs11772879	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	2747365	2747366	chr7:2747366:C:T	rs1200485939	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	2747369	2747370	chr7:2747370:T:C	rs950189511	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	2822980	2822981	chr7:2822981:C:A	rs577164001	C	A	C	Sox1.mouse_HMG_2	10	1	-	5.701317745005646	8.453915260730744	TTGAATTCCAGTAAT
chr7	2929873	2929874	chr7:2929874:G:A	rs1713909	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	2999047	2999048	chr7:2999048:C:T	rs75495103	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	3032089	3032090	chr7:3032090:C:T	rs7780254	C	T	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	3035024	3035025	chr7:3035025:G:A	chr7:3035025:G:A	G	A	G	Sox1.mouse_HMG_2	4	1	-	4.319773325706492	-0.11957837558666026	CTGACTTCAATTCTC
chr7	3035024	3035025	chr7:3035025:G:C	rs73292791	G	C	G	Sox1.mouse_HMG_2	4	1	-	4.319773325706492	-0.11957837558666026	CTGACTTCAATTCTC
chr7	3111062	3111063	chr7:3111063:G:A	rs4722426	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	3188940	3188941	chr7:3188941:A:G	rs17133145	A	G	g	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	3199547	3199548	chr7:3199548:G:C	rs7797535	G	C	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	3199549	3199550	chr7:3199550:G:A	rs10228184	G	A	G	Sox1.mouse_HMG_2	14	1	-	5.914597061490879	6.789209404213615	ACCAATAGCATTCAC
chr7	3216777	3216778	chr7:3216778:T:C	rs62439547	T	C	T	Sox1.mouse_HMG_2	7	1	-	7.275474655445083	6.574419835904008	TAGAATAACATTTAT
chr7	3286448	3286449	chr7:3286449:T:A	rs181950476	T	A	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	3592559	3592560	chr7:3592560:G:C	rs76659737	G	C	G	Sox1.mouse_HMG_2	9	1	-	5.098103811040189	5.098103811040189	ATAAATAACCTTCAC
chr7	3592579	3592580	chr7:3592580:C:G	rs181772205	C	G	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	4376970	4376971	chr7:4376971:G:C	rs73671472	G	C	G	Sox1.mouse_HMG_2	10	1	+	4.088857329608834	-0.00648673294634905	GTGAGTTGCAGTCAA
chr7	4384422	4384423	chr7:4384423:C:T	rs314647	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	4622641	4622642	chr7:4622642:T:C	rs7788456	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	4856773	4856774	chr7:4856774:C:T	rs28693978	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	5040264	5040265	chr7:5040265:A:G	rs12672798	A	G	a	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	5182526	5182527	chr7:5182527:C:A	rs10261990	C	A	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	5446450	5446451	chr7:5446451:A:G	rs4236391	A	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr7	5839150	5839151	chr7:5839151:T:C	rs308099	T	C	.	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	5839152	5839153	chr7:5839153:T:C	rs6965477	T	C	.	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	5865537	5865538	chr7:5865538:C:T	rs12667171	C	T	.	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr7	5987356	5987357	chr7:5987357:G:A	rs1805321	G	A	.	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	6121230	6121231	chr7:6121231:A:C	rs76705940	A	C	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr7	6222051	6222052	chr7:6222052:A:G	rs7791225	A	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	6370896	6370897	chr7:6370897:A:G	rs4724800	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	6506387	6506388	chr7:6506388:G:A	rs75926488	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr7	6602275	6602276	chr7:6602276:A:T	rs7808982	A	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	6929217	6929218	chr7:6929218:C:G	rs9770219	C	G	.	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr7	7229162	7229163	chr7:7229163:A:G	rs12539501	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	7385822	7385823	chr7:7385823:C:T	rs73674516	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.4034713288284175	-0.2419312041878	ATGAATTGCCTTTAT
chr7	7492911	7492912	chr7:7492912:A:G	rs7459128	A	G	A	Sox1.mouse_HMG_2	9	1	+	8.700839680989983	1.792084901674762	TTGACTGACATTCTC
chr7	7565014	7565015	chr7:7565015:C:T	rs115300490	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	7565024	7565025	chr7:7565025:G:A	rs972600	G	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	7667811	7667812	chr7:7667812:T:C	rs13232471	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	7667851	7667852	chr7:7667852:A:G	rs17169379	A	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	7697075	7697076	chr7:7697076:G:C	rs74960414	G	C	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr7	7760582	7760583	chr7:7760583:A:G	rs11764499	A	G	a	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	8063512	8063513	chr7:8063513:C:G	rs62433449	C	G	C	Sox1.mouse_HMG_2	8	1	+	4.800982087630633	-0.9175525749050754	TTGACTTGCATTTTT
chr7	8121570	8121571	chr7:8121571:T:C	rs7793383	T	C	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr7	8125337	8125338	chr7:8125338:C:A	rs73057510	C	A	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	8125376	8125377	chr7:8125377:T:C	rs10278050	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	8125377	8125378	chr7:8125378:A:G	rs10274896	A	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	8288211	8288212	chr7:8288212:A:C	rs2215889	A	C	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	8522314	8522315	chr7:8522315:T:C	rs2040765	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	8522329	8522330	chr7:8522330:A:G	rs2040766	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	8975977	8975978	chr7:8975978:T:C	rs4725150	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	8976020	8976021	chr7:8976021:T:C	rs16875030	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	9138390	9138391	chr7:9138391:C:T	rs1946900	C	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	9352105	9352106	chr7:9352106:C:T	rs17206741	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	9602784	9602785	chr7:9602785:C:G	rs2657247	C	G	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	9856855	9856856	chr7:9856856:T:C	rs10260827	T	C	T	Sox1.mouse_HMG_2	1	1	+	6.666955313492094	2.02296300599886	TTGAATTTCCTTCAA
chr7	10018254	10018255	chr7:10018255:T:C	rs10243462	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr7	10189712	10189713	chr7:10189713:T:G	rs2014175	T	G	A	Sox1.mouse_HMG_2	0	1	+	3.860223457996806	3.7908066248493952	TGGAAGAACATTCAC
chr7	10656904	10656905	chr7:10656905:C:T	rs912154819	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	10703731	10703732	chr7:10703732:T:C	rs6980353	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr7	10780420	10780421	chr7:10780421:T:C	rs55706508	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.150681077919463	2.710503656050824	CTGACTAGGAGTCAG
chr7	10874893	10874894	chr7:10874894:C:G	rs2882978	C	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	10894394	10894395	chr7:10894395:A:G	rs28550415	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr7	11192615	11192616	chr7:11192616:C:T	rs4236261	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	11192748	11192749	chr7:11192749:T:A	rs17164008	T	A	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	11234350	11234351	chr7:11234351:T:C	rs2714405	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	11460424	11460425	chr7:11460425:C:T	rs17164600	C	T	C	Sox1.mouse_HMG_2	4	1	+	4.715478687289552	0.2761269859964017	CTGACTTTCTTTCAG
chr7	11571089	11571090	chr7:11571090:A:G	rs62434505	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	11702577	11702578	chr7:11702578:G:A	rs10257747	G	A	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr7	11707796	11707797	chr7:11707797:T:G	rs892599474	T	G	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	11729683	11729684	chr7:11729684:T:C	rs1526558	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	11738006	11738007	chr7:11738007:G:A	rs138669544	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.246896973994316	-0.39850555902190077	ATGTATTTCATTTAT
chr7	11760457	11760458	chr7:11760458:G:A	rs57645050	G	A	G	Sox1.mouse_HMG_2	8	1	-	2.9220935748963335	-2.7223331154856525	ATGAGGAACATTCAC
chr7	12067117	12067118	chr7:12067118:C:T	rs6973973	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	12138507	12138508	chr7:12138508:G:T	rs4721045	G	T	T	Sox1.mouse_HMG_2	7	1	-	4.367700917963771	4.764385638631841	GTGAAGACAATTCAT
chr7	12146910	12146911	chr7:12146911:T:C	rs6968030	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.429681582091716	-1.4790731972235045	ATGGATTACATTCTG
chr7	12175209	12175210	chr7:12175210:A:G	rs1435535	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	12197673	12197674	chr7:12197674:G:C	rs967126	G	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	12210509	12210510	chr7:12210510:G:A	rs73299028	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	12227079	12227080	chr7:12227080:G:A	rs7804433	G	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr7	12227084	12227085	chr7:12227085:T:C	rs61225336	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	12389114	12389115	chr7:12389115:G:A	rs848017	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	12468650	12468651	chr7:12468651:A:T	rs847963	A	T	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	12588272	12588273	chr7:12588273:G:A	rs76515721	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	12718526	12718527	chr7:12718527:G:A	rs4719328	G	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr7	12941721	12941722	chr7:12941722:T:C	chr7:12941722:T:C	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.1764231409966595	0.5324308335034253	CTGACTTCCTTTCAG
chr7	13411738	13411739	chr7:13411739:A:T	rs192059188	A	T	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	13603847	13603848	chr7:13603848:G:A	rs139855498	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	13640305	13640306	chr7:13640306:C:T	rs11981893	C	T	C	Sox1.mouse_HMG_2	0	1	+	4.539814478707788	4.273871284938355	CTGAATTTCAGTTTT
chr7	13820864	13820865	chr7:13820865:T:C	rs6957915	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	13852084	13852085	chr7:13852085:G:A	rs77876350	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.104729136394272	-0.5406733966219447	GTGAAGGACATTCTC
chr7	13908400	13908401	chr7:13908401:C:G	rs17736124	C	G	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	13911212	13911213	chr7:13911213:C:T	rs77694863	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	14288703	14288704	chr7:14288704:T:C	rs17168044	T	C	T	Sox1.mouse_HMG_2	6	1	-	6.3102852495461175	4.870107827677476	CTGACTAACAATCAA
chr7	14446142	14446143	chr7:14446143:C:G	rs59778011	C	G	G	Sox1.mouse_HMG_2	7	1	-	3.1233587132896603	3.4277288121626666	GGGAATTGCCTTCAT
chr7	14504530	14504531	chr7:14504531:T:C	rs12533779	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	14504561	14504562	chr7:14504562:A:G	rs10256038	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr7	14687787	14687788	chr7:14687788:T:C	rs17668488	T	C	T	Sox1.mouse_HMG_2	5	1	+	3.895347791608232	-3.0134069877069884	GTGAATAAGCTTCAT
chr7	14833949	14833950	chr7:14833950:T:C	chr7:14833950:T:C	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	15043435	15043436	chr7:15043436:G:A	rs218080	G	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	15086904	15086905	chr7:15086905:T:G	rs142218207	T	G	T	Sox1.mouse_HMG_2	5	1	+	4.782007075993525	-2.1267477033216964	TTCACTTACATTCTT
chr7	15104980	15104981	chr7:15104981:T:C	rs76658158	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	15225692	15225693	chr7:15225693:G:C	rs7778853	G	C	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	15400482	15400483	chr7:15400483:C:T	rs4721433	C	T	T	Sox1.mouse_HMG_2	1	1	-	3.621414773655274	3.9258859527338497	CGGAATGACACTCAT
chr7	15400492	15400493	chr7:15400493:A:G	rs4719444	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	15424924	15424925	chr7:15424925:T:A	rs4721439	T	A	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr7	15508324	15508325	chr7:15508325:A:C	rs1992025	A	C	C	Sox1.mouse_HMG_2	0	1	+	8.50533631368209	7.836460107963731	ATAACTTACATTCAG
chr7	15559045	15559046	chr7:15559046:A:C	rs78741498	A	C	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr7	15608101	15608102	chr7:15608102:G:T	rs17168895	G	T	G	Sox1.mouse_HMG_2	8	1	-	4.358215878684733	-0.4912809368273664	ATGAATAACAATCCT
chr7	15649221	15649222	chr7:15649222:A:C	rs10228856	A	C	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	15864376	15864377	chr7:15864377:G:A	rs147879938	G	A	G	Sox1.mouse_HMG_2	7	1	+	3.238916735204954	3.9399715547460312	CTGACTAGCAGGCAC
chr7	15937321	15937322	chr7:15937322:A:T	rs10225607	A	T	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr7	15937322	15937323	chr7:15937323:T:C	rs10270667	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	15938007	15938008	chr7:15938008:T:A	rs10274526	T	A	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	16061046	16061047	chr7:16061047:T:C	rs11769952	T	C	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	16215536	16215537	chr7:16215537:C:T	rs56161298	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	16345138	16345139	chr7:16345139:A:G	rs2158486	A	G	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	16404917	16404918	chr7:16404918:C:A	rs186009387	C	A	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	16634658	16634659	chr7:16634659:G:C	rs73310802	G	C	G	Sox1.mouse_HMG_2	14	1	+	3.81553226387852	4.0939880379435225	AGGAATAGCATCCAG
chr7	16645599	16645600	chr7:16645600:C:T	rs189201989	C	T	C	Sox1.mouse_HMG_2	1	1	-	3.347709602889444	3.6521807819680197	GGGAATAACCTTCAA
chr7	16670940	16670941	chr7:16670941:A:G	rs11763990	A	G	A	Sox1.mouse_HMG_2	9	1	+	6.54294805119235	-0.3658067281228702	GGGAATGCCATTCTT
chr7	16696191	16696192	chr7:16696192:A:C	rs3807487	A	C	A	Sox1.mouse_HMG_2	0	1	+	5.723623868107852	5.054747662389494	ATGACTTTCAATCAC
chr7	16806160	16806161	chr7:16806161:G:T	rs12672294	G	T	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr7	16822298	16822299	chr7:16822299:G:C	rs36088247	G	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	16847202	16847203	chr7:16847203:C:T	rs1525743	C	T	c	Sox1.mouse_HMG_2	14	1	+	3.428317349485712	4.302929692208449	CTGAATATAACTCAC
chr7	17037882	17037883	chr7:17037883:G:C	rs13238728	G	C	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	17235972	17235973	chr7:17235973:T:C	rs12539940	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	17239717	17239718	chr7:17239718:T:G	rs73680637	T	G	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr7	17404549	17404550	chr7:17404550:T:C	rs566263978	T	C	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	17463912	17463913	chr7:17463913:C:G	rs79728322	C	G	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	17466139	17466140	chr7:17466140:C:G	rs4719501	C	G	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	17531286	17531287	chr7:17531287:T:G	rs139475333	T	G	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	17646194	17646195	chr7:17646195:C:T	rs11982921	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	17680637	17680638	chr7:17680638:C:T	rs2075085	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.703901123521516	0.05849859050530029	GTGTATTACATTCTC
chr7	17919510	17919511	chr7:17919511:C:A	rs2714858	C	A	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr7	18290118	18290119	chr7:18290119:A:G	rs150895469	A	G	A	Sox1.mouse_HMG_2	6	1	+	3.498205517312834	2.058028095444194	CTGACAAACATTCTC
chr7	18390521	18390522	chr7:18390522:A:T	rs116314955	A	T	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	18698626	18698627	chr7:18698627:T:C	rs78785747	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr7	18700415	18700416	chr7:18700416:C:T	rs169871	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	18736232	18736233	chr7:18736233:T:C	rs57312000	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	18830055	18830056	chr7:18830056:C:A	rs527333174	C	A	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr7	18830084	18830085	chr7:18830085:A:T	rs988121372	A	T	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	18857222	18857223	chr7:18857223:G:A	rs35041323	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr7	18903674	18903675	chr7:18903675:A:G	rs61388620	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	18903702	18903703	chr7:18903703:C:T	rs4721726	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	19177267	19177268	chr7:19177268:T:C	rs181643436	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	19215016	19215017	chr7:19215017:T:C	rs10264031	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr7	19248755	19248756	chr7:19248756:T:C	rs17140993	T	C	T	Sox1.mouse_HMG_2	1	1	+	4.907155227376497	0.26316291988326335	CTAAATACCATACAT
chr7	19530585	19530586	chr7:19530586:T:C	rs9648260	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	19660356	19660357	chr7:19660357:G:A	rs118092349	G	A	G	Sox1.mouse_HMG_2	7	1	-	4.1199023627515245	3.6589579090444184	AGGAAAACCATTCAG
chr7	20137709	20137710	chr7:20137710:G:A	rs10254700	G	A	A	Sox1.mouse_HMG_2	12	1	-	7.7583490678139855	3.085761964145731	ATGAATTGCCTTCAA
chr7	20264663	20264664	chr7:20264664:C:T	rs6976594	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	20270893	20270894	chr7:20270894:C:A	rs1385457063	C	A	C	Sox1.mouse_HMG_2	8	1	+	3.963567243705434	-0.885929571806665	AGGAATACCATTGAA
chr7	20301913	20301914	chr7:20301914:T:C	rs10464297	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	20404097	20404098	chr7:20404098:A:G	rs6972297	A	G	A	Sox1.mouse_HMG_2	5	1	-	5.073591626749484	-1.835163152565736	AACAATTGCATTCAC
chr7	20476131	20476132	chr7:20476132:G:T	rs6461502	G	T	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	20504371	20504372	chr7:20504372:C:A	rs17142982	C	A	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	20542072	20542073	chr7:20542073:T:C	rs76380568	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr7	20596841	20596842	chr7:20596842:A:G	rs17143143	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	20596855	20596856	chr7:20596856:T:C	rs1858941	T	C	T	Sox1.mouse_HMG_2	9	1	-	6.259946594815655	-0.6488081844995656	ATGACTTAAATTCTT
chr7	20596884	20596885	chr7:20596885:G:A	rs1858942	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	21145528	21145529	chr7:21145529:T:C	rs58258104	T	C	T	Sox1.mouse_HMG_2	13	1	+	2.797150697771758	-0.3292017581992964	CTGACGAGCATTCTC
chr7	21294006	21294007	chr7:21294007:A:G	rs2529155	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	21341351	21341352	chr7:21341352:G:T	rs4294095	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	21365075	21365076	chr7:21365076:C:G	rs183341459	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	21508071	21508072	chr7:21508072:C:T	rs28419471	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr7	21532765	21532766	chr7:21532766:C:A	rs113226321	C	A	C	Sox1.mouse_HMG_2	8	1	+	4.614027462955028	-0.23546935255707202	TTGAATACCCTTTAT
chr7	21572946	21572947	chr7:21572947:A:G	rs6976617	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	21673413	21673414	chr7:21673414:A:T	chr7:21673414:A:T	A	T	A	Sox1.mouse_HMG_2	14	1	-	3.374406475600126	2.05669711091744	CTGACTGACAGGCAT
chr7	21708011	21708012	chr7:21708012:A:G	rs2074759	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	21718604	21718605	chr7:21718605:A:G	rs2965412	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.03638035416913	3.0321441215339284	ATGAAAATAATTCAC
chr7	21718620	21718621	chr7:21718621:A:G	rs73682683	A	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	22365514	22365515	chr7:22365515:C:T	rs111657713	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	22418639	22418640	chr7:22418640:G:A	rs2528827	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.371157605054923	-1.2742449279612924	ATGACCTCCAGTCAC
chr7	22418653	22418654	chr7:22418654:G:A	rs2528828	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	22440145	22440146	chr7:22440146:C:T	rs2528847	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr7	22560148	22560149	chr7:22560149:T:C	rs79685462	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr7	22560149	22560150	chr7:22560150:G:C	rs1252153688	G	C	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	22561591	22561592	chr7:22561592:T:C	rs73270648	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	22585116	22585117	chr7:22585117:C:G	rs2961272	C	G	C	Sox1.mouse_HMG_2	12	1	+	4.74725970600497	-2.1531889444613936	TAAAATTCCATTCAA
chr7	22589665	22589666	chr7:22589666:C:T	rs2905349	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	22781399	22781400	chr7:22781400:C:T	rs13243243	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	22895725	22895726	chr7:22895726:G:A	rs184717239	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	22896343	22896344	chr7:22896344:T:C	rs2270102	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr7	23078430	23078431	chr7:23078431:T:A	rs6957013	T	A	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr7	23164347	23164348	chr7:23164348:T:A	rs858315	T	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr7	23334183	23334184	chr7:23334184:A:C	rs764528842	A	C	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	23396807	23396808	chr7:23396808:G:A	rs12700428	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	23795074	23795075	chr7:23795075:G:T	rs62470070	G	T	G	Sox1.mouse_HMG_2	1	1	-	3.9041640400181157	3.9041640400181157	GCGATTAACATTCAG
chr7	23957561	23957562	chr7:23957562:G:A	rs17148594	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	24422700	24422701	chr7:24422701:G:A	rs1858957	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr7	24428919	24428920	chr7:24428920:T:C	rs12533743	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	24591307	24591308	chr7:24591308:G:A	rs77286352	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	24971831	24971832	chr7:24971832:T:C	rs537108862	T	C	T	Sox1.mouse_HMG_2	7	1	-	7.873827299902899	7.172772480361825	ATGAATAACAGTGAT
chr7	25116604	25116605	chr7:25116605:G:A	rs11489282	G	A	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	25245259	25245260	chr7:25245260:T:C	rs2717874	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	25325780	25325781	chr7:25325781:A:G	rs10281820	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	25326701	25326702	chr7:25326702:A:G	rs12700606	A	G	A	Sox1.mouse_HMG_2	10	1	-	6.057159609361854	-0.7907819689184277	TTAAATTGCATTCTG
chr7	25391429	25391430	chr7:25391430:A:G	rs148429484	A	G	A	Sox1.mouse_HMG_2	0	1	+	3.491941228298119	2.4877049956629183	ATGTCTACCATTCTG
chr7	25391440	25391441	chr7:25391441:T:C	rs530603602	T	C	T	Sox1.mouse_HMG_2	11	1	+	3.491941228298119	-3.4168135510171007	ATGTCTACCATTCTG
chr7	25611402	25611403	chr7:25611403:C:G	rs139486315	C	G	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	25670789	25670790	chr7:25670790:T:C	rs4719821	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.994131230867555	-0.9146235484476665	GTGCCTTCCATTCAT
chr7	25723263	25723264	chr7:25723264:T:C	rs79799332	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	25723282	25723283	chr7:25723283:A:C	rs17152406	A	C	C	Sox1.mouse_HMG_2	6	1	+	3.185082963263733	-1.167332039424632	TGGAATACCTTTCAG
chr7	25778081	25778082	chr7:25778082:C:T	rs75792884	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	25795822	25795823	chr7:25795823:G:A	rs73683144	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	25835503	25835504	chr7:25835504:A:G	rs6974547	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	25983469	25983470	chr7:25983470:A:G	rs6947773	A	G	g	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	26468163	26468164	chr7:26468164:A:T	rs6962718	A	T	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	26809938	26809939	chr7:26809939:C:A	rs10244986	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	26978250	26978251	chr7:26978251:G:A	rs774253	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	27149039	27149040	chr7:27149040:G:A	rs983186	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	27351245	27351246	chr7:27351246:G:A	rs4722691	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	27552727	27552728	chr7:27552728:C:T	rs759269	C	T	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	27611444	27611445	chr7:27611445:G:T	rs6946582	G	T	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	27641575	27641576	chr7:27641576:A:G	rs6946305	A	G	G	Sox1.mouse_HMG_2	1	1	-	11.316165939136814	6.672173631643578	ATGAATTTCATTCTA
chr7	28165683	28165684	chr7:28165684:T:C	rs552707	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr7	28298460	28298461	chr7:28298461:T:C	rs2175738	T	C	T	Sox1.mouse_HMG_2	9	1	-	9.93874890735588	3.0299941280406566	TTGAATGGCATTCTA
chr7	28395909	28395910	chr7:28395910:A:G	rs76459238	A	G	A	Sox1.mouse_HMG_2	5	1	-	2.5241867261624167	-4.384568053152805	GGGAATGGCATGCAT
chr7	28424138	28424139	chr7:28424139:C:T	rs174021	C	T	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	28482693	28482694	chr7:28482694:T:A	rs217518	T	A	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr7	28493627	28493628	chr7:28493628:G:A	rs28393709	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr7	28625612	28625613	chr7:28625613:A:G	rs36114730	A	G	A	Sox1.mouse_HMG_2	11	1	+	7.558484208863582	7.558484208863582	CTGAATTCCATACAG
chr7	28625628	28625629	chr7:28625629:C:T	rs12667066	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	28625629	28625630	chr7:28625630:G:A	rs528317120	G	A	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	28639842	28639843	chr7:28639843:A:G	rs41315	A	G	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	28639846	28639847	chr7:28639847:C:T	rs186788692	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	28805412	28805413	chr7:28805413:T:C	rs2282911	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	28909465	28909466	chr7:28909466:C:G	rs7782321	C	G	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	28932689	28932690	chr7:28932690:A:G	rs10233884	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr7	28953725	28953726	chr7:28953726:C:A	rs137864032	C	A	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	28977994	28977995	chr7:28977995:C:T	rs77344596	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	28983780	28983781	chr7:28983781:C:T	rs1499229	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	29339068	29339069	chr7:29339069:C:A	rs61653900	C	A	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr7	29481250	29481251	chr7:29481251:T:C	rs3812323	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	30140792	30140793	chr7:30140793:A:G	rs10260668	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	30247745	30247746	chr7:30247746:G:C	rs881552	G	C	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	30473542	30473543	chr7:30473543:G:A	rs932272	G	A	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	30479413	30479414	chr7:30479414:C:T	rs2736726	C	T	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr7	30750615	30750616	chr7:30750616:T:C	rs6959671	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	30770938	30770939	chr7:30770939:C:A	rs740819	C	A	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	31171556	31171557	chr7:31171557:C:T	rs6462254	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	31478283	31478284	chr7:31478284:C:T	rs10224657	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	31527238	31527239	chr7:31527239:A:C	rs12701109	A	C	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr7	32239907	32239908	chr7:32239908:A:G	rs34064929	A	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr7	32470806	32470807	chr7:32470807:T:C	rs77667608	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr7	32473191	32473192	chr7:32473192:T:C	rs4723159	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	32896777	32896778	chr7:32896778:C:G	rs12536400	C	G	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	33384546	33384547	chr7:33384547:C:T	rs114073539	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	33669101	33669102	chr7:33669102:G:T	rs77673435	G	T	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	34573714	34573715	chr7:34573715:T:C	rs12531103	T	C	.	Sox1.mouse_HMG_2	14	1	-	3.286485989343788	3.451127237238736	CAGAATAGCTTTCAA
chr7	34589753	34589754	chr7:34589754:C:T	rs17185518	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	34660441	34660442	chr7:34660442:A:G	rs11761093	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	34665388	34665389	chr7:34665389:A:G	rs2530567	A	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	34887425	34887426	chr7:34887426:G:A	rs10215547	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	35377839	35377840	chr7:35377840:C:T	rs2052689	C	T	C	Sox1.mouse_HMG_2	6	1	-	4.290611953443464	5.730789375312104	AAGACTGGCATTCTC
chr7	35488230	35488231	chr7:35488231:G:A	rs73087406	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	35522259	35522260	chr7:35522260:T:C	rs867177	T	C	T	Sox1.mouse_HMG_2	13	1	-	8.565658933431363	3.6195412456587155	CTGACTTCCATTTAT
chr7	35571114	35571115	chr7:35571115:C:T	chr7:35571115:C:T	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.090365145032913	-0.5550373879833032	ATGAATCTCATCCAA
chr7	35747814	35747815	chr7:35747815:C:T	rs143628474	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	35865321	35865322	chr7:35865322:C:A	rs2715605	C	A	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	35906410	35906411	chr7:35906411:G:A	rs11978954	G	A	G	Sox1.mouse_HMG_2	0	1	+	3.237648629552794	4.241884862187996	GAGAAGATCATTCAC
chr7	35906419	35906420	chr7:35906420:A:G	rs1372886072	A	G	A	Sox1.mouse_HMG_2	9	1	+	3.237648629552794	-3.6711061497624247	GAGAAGATCATTCAC
chr7	35906430	35906431	chr7:35906431:A:G	rs748705760	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	36045312	36045313	chr7:36045313:G:A	rs2718016	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	36077826	36077827	chr7:36077827:G:C	rs12701480	G	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	36205967	36205968	chr7:36205968:G:T	rs2726092	G	T	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr7	36487785	36487786	chr7:36487786:T:A	rs190629490	T	A	T	Sox1.mouse_HMG_2	7	1	+	6.1829178055459355	7.0405469799211104	GTGACTATCAGTCTG
chr7	36487786	36487787	chr7:36487787:C:A	rs181936377	C	A	C	Sox1.mouse_HMG_2	8	1	+	6.1829178055459355	1.3334209900338363	GTGACTATCAGTCTG
chr7	36487808	36487809	chr7:36487809:C:A	rs12673399	C	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	36590968	36590969	chr7:36590969:G:T	rs2727800	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	36621281	36621282	chr7:36621282:A:G	rs2727821	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	36678220	36678221	chr7:36678221:A:T	rs4555998	A	T	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	36844521	36844522	chr7:36844522:A:G	rs6462716	A	G	G	Sox1.mouse_HMG_2	14	1	-	15.144812398227439	14.270200055504704	ATGACTAACATTCAT
chr7	37112992	37112993	chr7:37112993:A:T	rs59119882	A	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	37112996	37112997	chr7:37112997:C:T	rs75518675	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr7	37117536	37117537	chr7:37117537:T:C	rs78305301	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	37210829	37210830	chr7:37210830:G:A	rs6980211	G	A	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	37290776	37290777	chr7:37290777:A:C	rs2723964	A	C	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	37364044	37364045	chr7:37364045:C:T	rs2392495	C	T	C	Sox1.mouse_HMG_2	10	1	+	3.2805629442827726	10.128504522563054	CTGACTAACACTCTG
chr7	37410861	37410862	chr7:37410862:A:G	rs79815326	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.88169487933838	-0.9662466989419013	ATGAATTGCATCCTT
chr7	37443872	37443873	chr7:37443873:T:A	rs11972497	T	A	T	Sox1.mouse_HMG_2	14	1	+	6.094825377502506	4.777116012819819	ATGACTGGCCTTCAT
chr7	37495107	37495108	chr7:37495108:T:C	rs7798387	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr7	37505168	37505169	chr7:37505169:G:T	rs12113018	G	T	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr7	37585505	37585506	chr7:37585506:T:C	rs10951529	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	37843336	37843337	chr7:37843337:A:G	rs57739607	A	G	A	Sox1.mouse_HMG_2	3	1	+	4.106874666266138	-2.801880113049083	TTGACCAACATTCTT
chr7	37900793	37900794	chr7:37900794:G:A	rs12671853	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	38007246	38007247	chr7:38007247:T:C	rs1524050	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	38113841	38113842	chr7:38113842:T:C	rs4346915	T	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	38214039	38214040	chr7:38214040:A:G	rs12671662	A	G	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	38237855	38237856	chr7:38237856:C:A	rs183718493	C	A	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	38308005	38308006	chr7:38308006:A:G	rs12536664	A	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	38382992	38382993	chr7:38382993:T:G	rs73118105	T	G	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr7	38432892	38432893	chr7:38432893:T:G	rs6462840	T	G	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr7	38675136	38675137	chr7:38675137:C:G	rs71548631	C	G	C	Sox1.mouse_HMG_2	12	1	+	2.7924696849838675	-4.107978965482496	GTGAGTAACATGCAT
chr7	38710235	38710236	chr7:38710236:A:T	rs1978172	A	T	a	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	38908360	38908361	chr7:38908361:C:T	rs6973844	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	39294057	39294058	chr7:39294058:T:G	rs3935112	T	G	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr7	39609377	39609378	chr7:39609378:G:A	rs4723882	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr7	40136364	40136365	chr7:40136365:G:A	rs115025708	G	A	G	Sox1.mouse_HMG_2	0	1	+	7.588921966166888	8.593158198802088	GTGATTTCCATTCAC
chr7	40793353	40793354	chr7:40793354:T:G	rs17439729	T	G	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	40831171	40831172	chr7:40831172:C:T	rs10247275	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	40918743	40918744	chr7:40918744:C:A	rs17689310	C	A	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	41006878	41006879	chr7:41006879:T:C	rs73083549	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	41114783	41114784	chr7:41114784:G:A	rs10279346	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	41190398	41190399	chr7:41190399:A:G	rs255015	A	G	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	41378341	41378342	chr7:41378342:T:C	rs2330116	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	41537454	41537455	chr7:41537455:G:T	rs145846431	G	T	G	Sox1.mouse_HMG_2	2	1	+	6.904553498756361	0.007859167133647316	TTGACTACCATGCAT
chr7	41652577	41652578	chr7:41652578:T:C	rs34834424	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	41824485	41824486	chr7:41824486:A:G	rs56337902	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	41826797	41826798	chr7:41826798:A:C	rs11763434	A	C	A	Sox1.mouse_HMG_2	9	1	+	3.857519118654008	-3.0512356606612117	ATGAGTAACAATCAT
chr7	41847574	41847575	chr7:41847575:C:A	rs35287602	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr7	41884517	41884518	chr7:41884518:T:A	rs4563778	T	A	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	41975880	41975881	chr7:41975881:A:C	rs4724085	A	C	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr7	42066076	42066077	chr7:42066077:G:A	rs117132688	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	42078423	42078424	chr7:42078424:C:T	rs111993851	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	42151269	42151270	chr7:42151270:T:C	rs34738679	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	42181705	42181706	chr7:42181706:G:A	rs3779173	G	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr7	42193980	42193981	chr7:42193981:G:A	rs539745913	G	A	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	42273527	42273528	chr7:42273528:A:G	rs60260373	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr7	42549190	42549191	chr7:42549191:C:T	rs11971095	C	T	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	42574619	42574620	chr7:42574620:C:T	rs1524594	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	42574647	42574648	chr7:42574648:T:G	rs192673816	T	G	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	42790500	42790501	chr7:42790501:G:A	rs73317558	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr7	42894107	42894108	chr7:42894108:T:G	rs626366	T	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	42983114	42983115	chr7:42983115:A:G	rs637266	A	G	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	43012897	43012898	chr7:43012898:A:C	rs7785578	A	C	C	Sox1.mouse_HMG_2	1	1	-	5.007082536615644	0.058619050043834525	ATGAATTGCTTTCTC
chr7	43028099	43028100	chr7:43028100:G:A	rs17172153	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	43175242	43175243	chr7:43175243:G:A	rs9655043	G	A	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr7	43237839	43237840	chr7:43237840:G:A	rs111882544	G	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr7	43431194	43431195	chr7:43431195:T:C	rs777395463	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	43585834	43585835	chr7:43585835:G:A	chr7:43585835:G:A	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	44312751	44312752	chr7:44312752:A:C	rs6966275	A	C	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr7	44368457	44368458	chr7:44368458:C:T	rs114846832	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	44377605	44377606	chr7:44377606:C:T	rs530912532	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	44380335	44380336	chr7:44380336:G:C	rs138394117	G	C	G	Sox1.mouse_HMG_2	2	1	+	5.938790832798583	0.5461738979521454	TAGACTAACAGTCAC
chr7	44440950	44440951	chr7:44440951:A:G	rs11772013	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	44637498	44637499	chr7:44637499:C:T	rs2268310	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	44759747	44759748	chr7:44759748:T:C	rs73109470	T	C	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	45007231	45007232	chr7:45007232:C:A	rs1476618	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	45178569	45178570	chr7:45178570:C:T	rs1294936	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	45212255	45212256	chr7:45212256:A:C	rs60207265	A	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	45436004	45436005	chr7:45436005:A:G	rs73694093	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	45445316	45445317	chr7:45445317:T:A	rs146209848	T	A	T	Sox1.mouse_HMG_2	3	1	-	8.233624703596655	1.3248699242814321	CTGAATTACATACAC
chr7	45596231	45596232	chr7:45596232:C:T	rs142962261	C	T	C	Sox1.mouse_HMG_2	8	1	+	7.996725125867288	2.3522984354853014	TTTAATTTCATTCAT
chr7	45627875	45627876	chr7:45627876:A:C	rs1467270	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	46050444	46050445	chr7:46050445:C:T	rs13236592	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	46059644	46059645	chr7:46059645:G:A	rs35984236	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	46119143	46119144	chr7:46119144:G:T	rs12532079	G	T	g	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	46321364	46321365	chr7:46321365:T:G	rs12536255	T	G	t	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	46595095	46595096	chr7:46595096:T:A	rs142713141	T	A	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	46604191	46604192	chr7:46604192:A:T	rs138891943	A	T	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	46606764	46606765	chr7:46606765:C:T	rs983189330	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	46649454	46649455	chr7:46649455:G:A	rs6971030	G	A	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	46764857	46764858	chr7:46764858:A:G	rs6944447	A	G	G	Sox1.mouse_HMG_2	10	1	-	4.505354161242248	-2.342587417038034	ATGAAAGACATTTAT
chr7	46773171	46773172	chr7:46773172:T:C	rs10244537	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	46814790	46814791	chr7:46814791:G:T	rs57314294	G	T	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	46955757	46955758	chr7:46955758:T:C	rs12532558	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr7	47049741	47049742	chr7:47049742:T:C	rs6945274	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	47236268	47236269	chr7:47236269:C:T	rs2728461	C	T	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	47278677	47278678	chr7:47278678:C:T	rs6463407	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	47299117	47299118	chr7:47299118:A:C	rs6978815	A	C	C	Sox1.mouse_HMG_2	3	1	+	7.215509154763972	0.3067543754487535	GTGAATGACATTTTT
chr7	47313188	47313189	chr7:47313189:G:A	rs62446267	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	47454865	47454866	chr7:47454866:C:G	rs73095128	C	G	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr7	47551088	47551089	chr7:47551089:G:A	rs144027430	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	47601282	47601283	chr7:47601283:A:G	rs567472158	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	47693463	47693464	chr7:47693464:T:C	rs4720611	T	C	C	Sox1.mouse_HMG_2	10	1	+	14.036654546514422	7.188712968234141	TTGAATTCCATTCAA
chr7	47693471	47693472	chr7:47693472:C:T	rs4720612	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	47714672	47714673	chr7:47714673:G:A	rs117255278	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.961344306320189	1.315941773303973	ATGAGTACCATTCTG
chr7	47766478	47766479	chr7:47766479:T:C	rs10276437	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	47843763	47843764	chr7:47843764:T:C	rs9639016	T	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr7	47852486	47852487	chr7:47852487:C:A	rs28738706	C	A	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	47889590	47889591	chr7:47889591:C:A	rs10268695	C	A	C	Sox1.mouse_HMG_2	12	1	+	5.229284215429409	-1.671164435036955	CTGAATTCCAGTCCA
chr7	47956680	47956681	chr7:47956681:G:A	rs79969910	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr7	47982676	47982677	chr7:47982677:T:C	rs10499669	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	48096240	48096241	chr7:48096241:A:G	rs75399009	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	48112553	48112554	chr7:48112554:G:T	rs530041701	G	T	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr7	48352044	48352045	chr7:48352045:G:C	rs4145714	G	C	g	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	48392474	48392475	chr7:48392475:C:T	rs6946995	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr7	48411893	48411894	chr7:48411894:C:T	rs6970040	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	48431836	48431837	chr7:48431837:C:T	rs7357104	C	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	48565382	48565383	chr7:48565383:T:G	rs4917163	T	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	48565413	48565414	chr7:48565414:G:T	rs6944801	G	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	48703599	48703600	chr7:48703600:A:G	rs73098424	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr7	49626779	49626780	chr7:49626780:C:A	rs73694923	C	A	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	50143026	50143027	chr7:50143027:A:T	rs13231420	A	T	A	Sox1.mouse_HMG_2	10	1	-	4.450912506584356	-2.397029071695924	ATGAAAAAAATTCAA
chr7	50183120	50183121	chr7:50183121:C:T	rs546594148	C	T	C	Sox1.mouse_HMG_2	2	1	-	2.7550629532229896	-1.890339579793228	CTGAATACTATGCAG
chr7	50359348	50359349	chr7:50359349:T:C	rs530631744	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	50378581	50378582	chr7:50378582:T:A	rs80071925	T	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	50473044	50473045	chr7:50473045:T:C	rs7803247	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	50577674	50577675	chr7:50577675:G:A	rs11489736	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	50647440	50647441	chr7:50647441:G:T	rs78822579	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr7	50647467	50647468	chr7:50647468:C:T	rs56403574	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	50674847	50674848	chr7:50674848:C:T	rs2214964	C	T	T	Sox1.mouse_HMG_2	10	1	-	6.59318646806585	2.4978424055106663	TGGAATGTCAGTCAT
chr7	50690666	50690667	chr7:50690667:T:C	rs78283854	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	50731255	50731256	chr7:50731256:C:T	rs28599932	C	T	T	Sox1.mouse_HMG_2	9	1	-	5.272970479539263	12.181725258854483	AGGAATACCGTTCAT
chr7	50898702	50898703	chr7:50898703:T:A	rs2329559	T	A	a	Sox1.mouse_HMG_2	6	1	+	4.630494604789534	5.471500039530929	ACCAATTGCATTCAA
chr7	51115732	51115733	chr7:51115733:A:G	rs1370402	A	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	51226966	51226967	chr7:51226967:T:C	rs887057	T	C	T	Sox1.mouse_HMG_2	1	1	-	4.763410534820484	4.458939355741909	TAGAATTCCAGTCTT
chr7	51290295	51290296	chr7:51290296:T:A	rs77726646	T	A	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	51444980	51444981	chr7:51444981:T:C	rs1317141	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	51517316	51517317	chr7:51517317:A:G	rs4498493	A	G	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	51620969	51620970	chr7:51620970:T:C	rs7791588	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	51850444	51850445	chr7:51850445:C:T	rs686997	C	T	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	51862326	51862327	chr7:51862327:C:T	rs670754	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	51904920	51904921	chr7:51904921:A:G	rs7796595	A	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr7	52154625	52154626	chr7:52154626:G:A	rs10256183	G	A	G	Sox1.mouse_HMG_2	14	1	+	5.429681582091716	5.265040334196768	ATGAACTACATTCTG
chr7	52352682	52352683	chr7:52352683:A:G	rs296298	A	G	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	52550256	52550257	chr7:52550257:A:G	rs17135137	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr7	52654561	52654562	chr7:52654562:C:A	rs10249489	C	A	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	52742229	52742230	chr7:52742230:G:A	rs1230524	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.4563972429083996	-1.1890052901078163	ATGCATTACATTCCT
chr7	52742241	52742242	chr7:52742242:T:C	rs12234864	T	C	C	Sox1.mouse_HMG_2	14	1	+	3.4563972429083996	2.5817849001856636	ATGCATTACATTCCT
chr7	52831310	52831311	chr7:52831311:G:A	rs2965610	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	52831360	52831361	chr7:52831361:A:G	rs2965611	A	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	53324682	53324683	chr7:53324683:A:T	rs71544160	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	53381529	53381530	chr7:53381530:C:T	rs4947801	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	53478640	53478641	chr7:53478641:T:C	rs890044	T	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	53800976	53800977	chr7:53800977:G:T	rs181436618	G	T	G	Sox1.mouse_HMG_2	1	1	-	3.710653530952408	3.710653530952408	GCTAATACCATTCAC
chr7	53853084	53853085	chr7:53853085:C:T	rs6964171	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	54759705	54759706	chr7:54759706:T:C	rs118082693	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	54969203	54969204	chr7:54969204:C:G	rs1005176	C	G	G	Sox1.mouse_HMG_2	0	1	-	6.638878926510706	6.97423895342755	GTGACTCCCAGTCAT
chr7	55111515	55111516	chr7:55111516:G:T	rs759158	G	T	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	55132963	55132964	chr7:55132964:C:T	rs7787752	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	55395823	55395824	chr7:55395824:A:G	rs9649858	A	G	a	Sox1.mouse_HMG_2	13	1	+	8.285041975499436	3.338924287726787	GAGAATTACAGTCAT
chr7	55413695	55413696	chr7:55413696:T:C	rs1568824	T	C	C	Sox1.mouse_HMG_2	0	1	+	10.39830892165753	10.664252115426962	TAGAATACCATTCAG
chr7	55539495	55539496	chr7:55539496:T:C	rs11768022	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	56004913	56004914	chr7:56004914:T:C	rs113251158	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.682068548821211	-1.22668623049401	GTGACCACCATTCAG
chr7	56831976	56831977	chr7:56831977:G:C	rs4960526	G	C	G	Sox1.mouse_HMG_2	2	1	+	3.555397269741658	-1.837219665104779	TGGAATGGCAGTCTT
chr7	57485653	57485654	chr7:57485654:G:C	rs11771965	G	C	C	Sox1.mouse_HMG_2	12	1	-	3.698593083259901	-3.2018555672064632	GCGAAAACCATTCAC
chr7	57651850	57651851	chr7:57651851:G:A	rs377379370	G	A	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	58039204	58039205	chr7:58039205:T:C	rs7293857	T	C	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	62302329	62302330	chr7:62302330:A:T	rs1469864695	A	T	.	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	62350272	62350273	chr7:62350273:T:C	rs79542864	T	C	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	63066470	63066471	chr7:63066471:A:G	rs34135206	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.77997236833048	-2.12878241098474	CTGAAATGCAGTCAC
chr7	64240632	64240633	chr7:64240633:A:G	rs11978020	A	G	-	Sox1.mouse_HMG_2	14	1	-	3.7345951231100583	2.8599827803873223	CTGGATTGCATTTAT
chr7	64614992	64614993	chr7:64614993:C:A	rs57553713	C	A	c	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	64903774	64903775	chr7:64903775:T:C	rs10232081	T	C	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	65401920	65401921	chr7:65401921:T:C	rs10237590	T	C	t	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	65441002	65441003	chr7:65441003:T:C	rs17784082	T	C	t	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	66204076	66204077	chr7:66204077:G:T	rs28491091	G	T	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	66255896	66255897	chr7:66255897:A:G	rs12537823	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	66297975	66297976	chr7:66297976:T:A	rs2173570	T	A	T	Sox1.mouse_HMG_2	11	1	+	4.960684890853708	-1.9480698884615124	TAGAATGACATTTAC
chr7	66315304	66315305	chr7:66315305:T:C	rs181155818	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	66534028	66534029	chr7:66534029:A:G	rs62465429	A	G	a	Sox1.mouse_HMG_2	5	1	-	4.889519094395685	-2.019235684919535	GTTAATTGCATTCTT
chr7	66742519	66742520	chr7:66742520:A:C	rs560900824	A	C	a	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr7	67267967	67267968	chr7:67267968:C:T	rs11762635	C	T	.	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	67753584	67753585	chr7:67753585:C:T	rs2864459	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	68159041	68159042	chr7:68159042:C:T	rs75517856	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	68306813	68306814	chr7:68306814:G:C	rs1524869	G	C	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	68349743	68349744	chr7:68349744:T:A	rs7794971	T	A	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	68425723	68425724	chr7:68425724:C:T	rs12540145	C	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	68487491	68487492	chr7:68487492:T:C	rs903526	T	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr7	68767769	68767770	chr7:68767770:C:A	rs2527659	C	A	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	69537499	69537500	chr7:69537500:G:A	rs376325500	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	69644279	69644280	chr7:69644280:A:G	rs2533440	A	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	69793993	69793994	chr7:69793994:A:C	rs10229588	A	C	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	70099514	70099515	chr7:70099515:C:T	rs78613045	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	70575571	70575572	chr7:70575572:C:T	rs4718966	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	70604214	70604215	chr7:70604215:C:T	rs38305	C	T	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	71349612	71349613	chr7:71349613:A:G	rs1922513	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr7	71470766	71470767	chr7:71470767:A:G	rs10264348	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	71627010	71627011	chr7:71627011:A:G	rs78850529	A	G	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	71729135	71729136	chr7:71729136:A:G	rs517781	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	72085093	72085094	chr7:72085094:C:T	rs4719207	C	T	C	Sox1.mouse_HMG_2	8	1	+	2.820510345939632	-2.823916344442354	CTGACTTACGGTCAG
chr7	72484565	72484566	chr7:72484566:C:A	rs192956612	C	A	C	Sox1.mouse_HMG_2	12	1	+	5.454878915061663	-1.4455697354047012	CTGACTTCCATGCAC
chr7	73447518	73447519	chr7:73447519:T:C	rs2237279	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.573107861664728	0.62699017389208	CTGGCTTACATTCAG
chr7	73652625	73652626	chr7:73652626:C:T	rs6974571	C	T	C	Sox1.mouse_HMG_2	8	1	+	8.928736746118094	3.284310055736106	CTGACTAACATTTAC
chr7	73652626	73652627	chr7:73652627:A:G	rs6974424	A	G	G	Sox1.mouse_HMG_2	9	1	+	8.928736746118094	2.019981966802872	CTGACTAACATTTAC
chr7	73799656	73799657	chr7:73799657:A:G	rs77354187	A	G	A	Sox1.mouse_HMG_2	4	1	+	7.40739404509734	0.5859812759372657	TTGAATAACATTTTA
chr7	73979402	73979403	chr7:73979403:A:G	rs190834488	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	74299022	74299023	chr7:74299023:C:T	rs141564109	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	74578673	74578674	chr7:74578674:C:A	rs184499734	C	A	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	74580573	74580574	chr7:74580574:T:C	chr7:74580574:T:C	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	75547001	75547002	chr7:75547002:T:C	rs1167801	T	C	T	Sox1.mouse_HMG_2	9	1	+	2.3394328822044885	2.3394328822044885	CTGAATAGCTTGCAT
chr7	76113115	76113116	chr7:76113116:C:T	rs2158869	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	76202221	76202222	chr7:76202222:C:T	rs186918872	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	76304432	76304433	chr7:76304433:C:T	rs117510558	C	T	C	Sox1.mouse_HMG_2	6	1	+	3.2147664105054963	6.726175978452469	CTGACTCACATCCAT
chr7	76373341	76373342	chr7:76373342:G:A	rs111646592	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	76373377	76373378	chr7:76373378:C:T	rs77837153	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	77201247	77201248	chr7:77201248:C:T	rs191952530	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr7	77222982	77222983	chr7:77222983:T:C	rs77056943	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	77254399	77254400	chr7:77254400:C:A	rs2056709	C	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	77341159	77341160	chr7:77341160:C:T	rs11769989	C	T	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	77427792	77427793	chr7:77427793:T:C	rs7778041	T	C	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr7	77427819	77427820	chr7:77427820:A:G	rs183695412	A	G	A	Sox1.mouse_HMG_2	13	1	+	4.577251153869415	-0.3688665339032334	CTGTCTGCCATTCAG
chr7	77566177	77566178	chr7:77566178:A:G	rs7788619	A	G	G	Sox1.mouse_HMG_2	1	1	-	3.9160990697721676	-0.7278932377210648	ATGACTAGCAGTAAC
chr7	77887746	77887747	chr7:77887747:A:G	rs537064892	A	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	78039984	78039985	chr7:78039985:G:A	rs3807784	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	78110850	78110851	chr7:78110851:G:A	rs3823793	G	A	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	78139538	78139539	chr7:78139539:A:C	rs542342188	A	C	A	Sox1.mouse_HMG_2	10	1	-	10.30877597626622	7.556178460541123	ATGAGTACCATTCAT
chr7	78152131	78152132	chr7:78152132:C:A	rs3779292	C	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	78372536	78372537	chr7:78372537:G:A	rs66733412	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.974126379285907	1.3287238462696909	AAGAATAACATACAT
chr7	78472337	78472338	chr7:78472338:A:G	rs113916245	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	78692295	78692296	chr7:78692296:A:G	rs7785088	A	G	A	Sox1.mouse_HMG_2	11	1	-	11.331718095622339	4.422963316307117	ATAAATACCATTCAG
chr7	78722716	78722717	chr7:78722717:G:A	rs7805425	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	78899505	78899506	chr7:78899506:T:G	rs17469166	T	G	T	Sox1.mouse_HMG_2	3	1	+	3.008309087922845	3.008309087922845	ATGTATAGCCTTCAT
chr7	79312142	79312143	chr7:79312143:T:A	rs10280554	T	A	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	79452209	79452210	chr7:79452210:G:C	rs12154329	G	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	79665263	79665264	chr7:79665264:A:G	rs6949332	A	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	79665279	79665280	chr7:79665280:G:C	rs6966691	G	C	G	Sox1.mouse_HMG_2	10	1	-	3.156464299112933	7.251808361668118	ATGAGTAGCACTCAT
chr7	79691230	79691231	chr7:79691231:G:T	rs10499845	G	T	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	79856466	79856467	chr7:79856467:G:A	rs79113028	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	80455072	80455073	chr7:80455073:A:G	rs799977	A	G	G	Sox1.mouse_HMG_2	4	1	+	14.450821825196856	7.629409056036785	TTGAATGGCATTCAT
chr7	80763899	80763900	chr7:80763900:T:C	rs3823478	T	C	T	Sox1.mouse_HMG_2	10	1	+	8.22530709281173	1.377365514531448	CTGAATATCATTGAC
chr7	80770194	80770195	chr7:80770195:T:C	rs10261267	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr7	80774207	80774208	chr7:80774208:A:G	rs72612620	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	80774237	80774238	chr7:80774238:T:G	rs73137708	T	G	T	Sox1.mouse_HMG_2	11	1	+	9.068365849323332	2.1596110700081126	ATGAACACCATTCAG
chr7	81052562	81052563	chr7:81052563:G:A	rs1636593	G	A	A	Sox1.mouse_HMG_2	14	1	+	4.910479947227228	4.74583869933228	TTGACTTCCATACAG
chr7	81121457	81121458	chr7:81121458:G:C	rs6467574	G	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	81138945	81138946	chr7:81138946:G:A	rs3914075	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	81151835	81151836	chr7:81151836:G:A	rs58500032	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	81161914	81161915	chr7:81161915:T:C	rs560921	T	C	C	Sox1.mouse_HMG_2	1	1	+	3.543286834077959	-1.100705473415273	CTGTCTACCAGTCAC
chr7	81648806	81648807	chr7:81648807:G:A	rs4732399	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	81694543	81694544	chr7:81694544:G:T	rs2190219	G	T	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	81847282	81847283	chr7:81847283:G:A	rs12707465	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	81855656	81855657	chr7:81855657:T:C	rs114113021	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	82109630	82109631	chr7:82109631:C:T	rs4732423	C	T	T	Sox1.mouse_HMG_2	10	1	-	6.547811806371358	2.4524677438161735	ATGAACAACAGTCAA
chr7	82212287	82212288	chr7:82212288:A:C	rs77007797	A	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	82288948	82288949	chr7:82288949:G:A	rs116894339	G	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	82313530	82313531	chr7:82313531:T:C	rs10274741	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	82363943	82363944	chr7:82363944:T:C	rs2018982	T	C	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr7	82425194	82425195	chr7:82425195:T:G	rs80247894	T	G	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	82468607	82468608	chr7:82468608:G:C	rs4728514	G	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	82468643	82468644	chr7:82468644:C:T	rs1398014971	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	82470848	82470849	chr7:82470849:C:T	rs6957160	C	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	82578468	82578469	chr7:82578469:G:A	rs2189984	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	83414013	83414014	chr7:83414014:A:G	rs79208174	A	G	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	83689558	83689559	chr7:83689559:T:G	rs10485855	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	83696340	83696341	chr7:83696341:G:A	rs7806361	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	83926103	83926104	chr7:83926104:A:G	rs113640748	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	83986576	83986577	chr7:83986577:G:A	rs34233210	G	A	A	Sox1.mouse_HMG_2	2	1	+	4.215477412477761	-0.429925120538455	GTGTCTTTCATTCAA
chr7	84178358	84178359	chr7:84178359:C:T	rs7805512	C	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	84194083	84194084	chr7:84194084:T:C	rs76366857	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	84612912	84612913	chr7:84612913:T:C	rs115143474	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	84648158	84648159	chr7:84648159:T:C	rs61691105	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	84819437	84819438	chr7:84819438:G:C	rs1583142	G	C	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	85204783	85204784	chr7:85204784:A:T	rs1473150	A	T	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	85285374	85285375	chr7:85285375:G:A	rs6944323	G	A	G	Sox1.mouse_HMG_2	10	1	+	7.277170691448739	3.181826628893555	ATAAATTTCAGTCAG
chr7	85434647	85434648	chr7:85434648:T:C	rs7806024	T	C	T	Sox1.mouse_HMG_2	11	1	+	6.032740870974594	-0.8760139083406265	GTGAATAGGAGTCAA
chr7	85434664	85434665	chr7:85434665:A:G	rs2462068	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	85482212	85482213	chr7:85482213:C:T	rs2140461	C	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	85591952	85591953	chr7:85591953:T:C	rs12704144	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr7	85776020	85776021	chr7:85776021:A:C	rs10273682	A	C	A	Sox1.mouse_HMG_2	14	1	+	3.837199697198429	4.280296719158379	ATGAGTAGAATTCAA
chr7	85908318	85908319	chr7:85908319:A:G	rs1052819341	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr7	85960921	85960922	chr7:85960922:T:G	rs10275700	T	G	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	86236900	86236901	chr7:86236901:C:T	rs7458310	C	T	C	Sox1.mouse_HMG_2	6	1	-	7.634452716469408	9.07463013833805	CTGAACGACATTCAC
chr7	86562292	86562293	chr7:86562293:C:G	rs1527767	C	G	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr7	86717354	86717355	chr7:86717355:T:C	rs2237546	T	C	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	87499248	87499249	chr7:87499249:T:C	rs1443612081	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	87552532	87552533	chr7:87552533:G:T	rs3789244	G	T	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	87566571	87566572	chr7:87566572:T:C	rs28381848	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	88111951	88111952	chr7:88111952:A:G	rs574099042	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr7	88112198	88112199	chr7:88112199:G:C	rs2299199	G	C	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	88289751	88289752	chr7:88289752:G:A	rs7795239	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	88345199	88345200	chr7:88345200:G:A	rs4728747	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	88818806	88818807	chr7:88818807:T:C	rs6968172	T	C	T	Sox1.mouse_HMG_2	0	1	-	2.809077525541131	1.8048412929059288	ATGATTAGCATTCCC
chr7	89023740	89023741	chr7:89023741:C:T	rs116597366	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr7	89202518	89202519	chr7:89202519:A:T	rs60477414	A	T	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr7	89380088	89380089	chr7:89380089:A:G	rs548446821	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	89934271	89934272	chr7:89934272:G:A	rs117927146	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	89962746	89962747	chr7:89962747:G:C	rs61291068	G	C	G	Sox1.mouse_HMG_2	7	1	-	7.906644201519698	7.602274102646691	ATGGATGCCATTCAC
chr7	90018085	90018086	chr7:90018086:G:A	rs740291	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	90209494	90209495	chr7:90209495:G:A	rs2188234	G	A	G	Sox1.mouse_HMG_2	2	1	+	4.9872275523245575	0.34182501930834086	ACGACTTACATTTAT
chr7	90216588	90216589	chr7:90216589:G:A	rs11563440	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	90384000	90384001	chr7:90384001:A:C	rs12534797	A	C	A	Sox1.mouse_HMG_2	13	1	+	4.602785128503491	-1.7179308806258562	CTAAATAGCCTTCAT
chr7	90447305	90447306	chr7:90447306:C:G	rs17862190	C	G	C	Sox1.mouse_HMG_2	4	1	+	3.499633811471457	-0.9397178898216935	ATGACATGCATTCTT
chr7	90671991	90671992	chr7:90671992:G:A	rs7788547	G	A	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr7	90698436	90698437	chr7:90698437:G:T	rs7804518	G	T	G	Sox1.mouse_HMG_2	7	1	-	7.64430118040945	8.04098590107752	TTAAATACCAGTCAG
chr7	90973907	90973908	chr7:90973908:C:T	rs11976902	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	91566586	91566587	chr7:91566587:C:T	rs2540576	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	92799957	92799958	chr7:92799958:G:A	rs149753505	G	A	G	Sox1.mouse_HMG_2	14	1	-	6.357340284242525	7.231952626965262	AGAAATAGCATTCAC
chr7	92866564	92866565	chr7:92866565:A:G	rs191272642	A	G	A	Sox1.mouse_HMG_2	13	1	+	4.169706748881702	-0.7764109388909465	TTGAATTACATATAT
chr7	92973837	92973838	chr7:92973838:G:A	rs424	G	A	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	92988004	92988005	chr7:92988005:T:A	rs7795033	T	A	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	93327443	93327444	chr7:93327444:C:T	rs58939273	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	93333066	93333067	chr7:93333067:A:T	rs28595783	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	93508135	93508136	chr7:93508136:A:G	rs9656015	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	93623087	93623088	chr7:93623088:T:C	rs957728	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	93737204	93737205	chr7:93737205:A:G	rs13235693	A	G	A	Sox1.mouse_HMG_2	1	1	-	2.898520693379603	-1.7454716141136313	ATGACTGACAGTAAG
chr7	93841119	93841120	chr7:93841120:G:A	rs2519661	G	A	A	Sox1.mouse_HMG_2	14	1	-	3.9399715547460286	4.814583897468765	CTGTCTAACAGTCAC
chr7	94043822	94043823	chr7:94043823:A:T	rs17306068	A	T	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	94130263	94130264	chr7:94130264:C:T	rs141206300	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	94304287	94304288	chr7:94304288:C:T	rs148346345	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr7	94368511	94368512	chr7:94368512:C:T	rs78228321	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	94561775	94561776	chr7:94561776:G:C	rs10499907	G	C	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	94561780	94561781	chr7:94561781:C:T	rs75259633	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	94701172	94701173	chr7:94701173:A:G	rs1915990	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	94777112	94777113	chr7:94777113:A:G	rs4376436	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr7	95067257	95067258	chr7:95067258:A:G	chr7:95067258:A:G	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	95067283	95067284	chr7:95067284:A:T	rs75336095	A	T	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	95421336	95421337	chr7:95421337:T:G	rs17876106	T	G	T	Sox1.mouse_HMG_2	9	1	-	4.454882285672867	-2.4538724936423537	GTGAATACAAGTCTC
chr7	95794871	95794872	chr7:95794872:A:G	rs74854159	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.6238598833281594	3.6196236506929607	ATGAATAAAATTGAG
chr7	96212127	96212128	chr7:96212128:G:A	rs75421365	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	96219850	96219851	chr7:96219851:A:G	rs75077544	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	96304181	96304182	chr7:96304182:C:T	rs547247144	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	96830800	96830801	chr7:96830801:A:C	rs150621338	A	C	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	96861104	96861105	chr7:96861105:C:G	rs7788639	C	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	96962355	96962356	chr7:96962356:A:G	rs73232633	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr7	97001922	97001923	chr7:97001923:A:T	rs2240295	A	T	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	97065391	97065392	chr7:97065392:A:G	rs77032418	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr7	97298778	97298779	chr7:97298779:A:G	rs2394620	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.735801487118422	-1.1729532921967976	ATGACTTGCATTTTT
chr7	97298786	97298787	chr7:97298787:G:A	rs77519619	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	97319152	97319153	chr7:97319153:T:C	rs4506130	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	97353553	97353554	chr7:97353554:C:T	rs7802082	C	T	T	Sox1.mouse_HMG_2	4	1	+	5.508691318833261	1.069339617540109	CTGACTTGCAGTTAT
chr7	97353568	97353569	chr7:97353569:T:C	rs7785121	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	97466271	97466272	chr7:97466272:A:T	rs759423	A	T	A	Sox1.mouse_HMG_2	9	1	+	3.162607706634851	-3.7461470726803694	CTAAAGGGCATTCAT
chr7	98083788	98083789	chr7:98083789:C:G	rs7790479	C	G	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	98110190	98110191	chr7:98110191:T:A	rs17169293	T	A	T	Sox1.mouse_HMG_2	7	1	+	4.419026203017353	5.276655377392529	CTGAAGATCATTTAT
chr7	98358188	98358189	chr7:98358189:C:T	rs1468339	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	98380601	98380602	chr7:98380602:T:C	rs7787858	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	98630907	98630908	chr7:98630908:A:T	rs55875706	A	T	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	98630914	98630915	chr7:98630915:C:G	rs1728987	C	G	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	98703140	98703141	chr7:98703141:T:C	rs62472579	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr7	98708871	98708872	chr7:98708872:G:C	rs7790277	G	C	G	Sox1.mouse_HMG_2	1	1	+	5.7451167868139645	6.049587965892539	AGGACTTTCAGTCAT
chr7	98802164	98802165	chr7:98802165:T:G	chr7:98802165:T:G	T	G	t	Sox1.mouse_HMG_2	11	1	+	2.673351656059051	-4.2354031232561695	CTGACTGGCTGTCAT
chr7	98802183	98802184	chr7:98802184:T:G	rs1437548315	T	G	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	98802186	98802187	chr7:98802187:A:C	rs4729491	A	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	98813671	98813672	chr7:98813672:T:C	rs77722506	T	C	T	Sox1.mouse_HMG_2	6	1	+	5.533186777160448	2.021777209213476	GTGACGTTCATTCAT
chr7	99143419	99143420	chr7:99143420:T:C	rs138076550	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	99143433	99143434	chr7:99143434:C:T	rs12535829	C	T	c	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	99143437	99143438	chr7:99143438:G:A	chr7:99143438:G:A	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.4062774009600294	-1.2663097027082255	CTCATTTCCATTCAT
chr7	99184442	99184443	chr7:99184443:G:A	rs35072460	G	A	G	Sox1.mouse_HMG_2	13	1	+	3.369813135565055	8.315930823337704	CGGAATTACAGTCGT
chr7	99273373	99273374	chr7:99273374:A:G	rs28608208	A	G	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	99368939	99368940	chr7:99368940:G:A	rs73163169	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	99997102	99997103	chr7:99997103:T:C	rs12705067	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	100213196	100213197	chr7:100213197:A:G	rs112084126	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	100540347	100540348	chr7:100540348:G:T	rs73154895	G	T	G	Sox1.mouse_HMG_2	8	1	-	2.64363780083133	-2.2058590146807684	ATGATTAACCTTCAG
chr7	100680308	100680309	chr7:100680309:A:G	rs142574429	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	100932431	100932432	chr7:100932432:C:T	rs78413681	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	100932473	100932474	chr7:100932474:A:C	rs76227289	A	C	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	100932474	100932475	chr7:100932475:A:C	rs73163712	A	C	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	101020572	101020573	chr7:101020573:T:C	rs6961122	T	C	c	Sox1.mouse_HMG_2	4	1	-	3.339653497739891	-3.4817592714201804	TTGAACACCAGTCTT
chr7	101114628	101114629	chr7:101114629:C:T	rs373127484	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr7	101132704	101132705	chr7:101132705:A:G	rs2227673	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	101132926	101132927	chr7:101132927:A:G	rs2227674	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	101586983	101586984	chr7:101586984:A:G	rs546828117	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	101598529	101598530	chr7:101598530:C:T	rs138414382	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr7	101651691	101651692	chr7:101651692:T:C	rs202112968	T	C	T	Sox1.mouse_HMG_2	0	1	+	6.988170916221143	7.254114109990575	TTGGATTGCATTCAG
chr7	101811335	101811336	chr7:101811336:C:T	rs2529232	C	T	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	101875672	101875673	chr7:101875673:G:T	chr7:101875673:G:T	G	T	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	101898433	101898434	chr7:101898434:A:C	rs13229243	A	C	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	101903035	101903036	chr7:101903036:C:T	rs6961094	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr7	101993965	101993966	chr7:101993966:T:C	rs202159	T	C	C	Sox1.mouse_HMG_2	1	1	+	5.730319270657154	1.0863269631639199	CTGGCTGCCATTCAT
chr7	102016446	102016447	chr7:102016447:T:C	rs10248831	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr7	102071624	102071625	chr7:102071625:C:T	rs10234321	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr7	102096269	102096270	chr7:102096270:G:A	rs201451	G	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr7	102106933	102106934	chr7:102106934:A:C	rs965863	A	C	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	102236008	102236009	chr7:102236009:T:A	rs365857	T	A	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	102312593	102312594	chr7:102312594:T:C	rs1027213816	T	C	t	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	102934941	102934942	chr7:102934942:T:C	rs143161618	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	103447961	103447962	chr7:103447962:A:C	rs1004245	A	C	C	Sox1.mouse_HMG_2	13	1	+	4.447710390343642	-1.8730056187857058	CTTAATTACATTTAT
chr7	103515416	103515417	chr7:103515417:A:G	rs56345626	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr7	103607605	103607606	chr7:103607606:C:T	rs140948716	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	103714053	103714054	chr7:103714054:C:A	rs56200539	C	A	C	Sox1.mouse_HMG_2	8	1	+	4.448751605987616	-0.4007452095244838	ATGACTCCCAGTCTT
chr7	103719017	103719018	chr7:103719018:A:G	rs2299372	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	103735718	103735719	chr7:103735719:C:A	rs17155063	C	A	C	Sox1.mouse_HMG_2	4	1	+	3.7374762032811697	6.119537271148091	CTCACTGACAGTCAG
chr7	103857319	103857320	chr7:103857320:T:C	rs1404430	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	103857320	103857321	chr7:103857321:A:T	rs1404429	A	T	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	103875764	103875765	chr7:103875765:G:C	rs7784979	G	C	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	103875797	103875798	chr7:103875798:G:A	rs7784991	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	103875812	103875813	chr7:103875813:A:C	rs7784621	A	C	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	104036703	104036704	chr7:104036704:T:C	rs4729945	T	C	t	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr7	104151167	104151168	chr7:104151168:T:C	rs2299408	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.825795208550803	-0.9956175606092693	TTCAATAGCATTTAT
chr7	104366726	104366727	chr7:104366727:A:C	rs7792363	A	C	A	Sox1.mouse_HMG_2	11	1	-	4.430655899480455	-2.4780988798347647	ATAAAATGCATTCAT
chr7	104483096	104483097	chr7:104483097:G:A	rs11760238	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.994131230867553	0.34970454048556754	GTGACTTCCATCCAT
chr7	104819644	104819645	chr7:104819645:A:G	rs73714138	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	104979845	104979846	chr7:104979846:A:C	chr7:104979846:A:C	A	C	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	105011720	105011721	chr7:105011721:T:C	rs2891761	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr7	105029985	105029986	chr7:105029986:G:A	rs740298	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr7	105204646	105204647	chr7:105204647:T:C	rs41562	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	105204676	105204677	chr7:105204677:A:C	rs2237611	A	C	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	105589729	105589730	chr7:105589730:C:A	rs911199959	C	A	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	105698795	105698796	chr7:105698796:C:G	rs11766337	C	G	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	105816930	105816931	chr7:105816931:G:C	rs6965296	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.986448454833054	-1.9140001956333095	TTGACTGACTTTCAC
chr7	106387227	106387228	chr7:106387228:C:T	rs6954220	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	106420493	106420494	chr7:106420494:T:C	rs73723440	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	106523869	106523870	chr7:106523870:G:A	rs17367541	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	106542212	106542213	chr7:106542213:A:C	rs12539386	A	C	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	106641644	106641645	chr7:106641645:G:A	rs893484777	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	106819850	106819851	chr7:106819851:A:G	rs35083478	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	106842511	106842512	chr7:106842512:G:A	rs4727662	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	106842520	106842521	chr7:106842521:A:G	rs4727663	A	G	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	106859990	106859991	chr7:106859991:T:C	rs757903	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	107068615	107068616	chr7:107068616:G:T	rs2536499	G	T	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr7	107355793	107355794	chr7:107355794:T:C	rs73187349	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr7	107565166	107565167	chr7:107565167:G:C	rs78602570	G	C	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	107638240	107638241	chr7:107638241:G:C	rs12668615	G	C	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	107719559	107719560	chr7:107719560:C:T	rs2028030	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	107725405	107725406	chr7:107725406:C:T	rs11972418	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	107981704	107981705	chr7:107981705:A:G	rs2237701	A	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	108194289	108194290	chr7:108194290:C:T	rs404287	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	108198987	108198988	chr7:108198988:C:T	rs369800	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	108246430	108246431	chr7:108246431:G:A	rs139718093	G	A	G	Sox1.mouse_HMG_2	4	1	-	2.34015406778276	-2.0991976335103915	CTGTCTCACATTCAC
chr7	108309082	108309083	chr7:108309083:T:C	rs2216258	T	C	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	108324173	108324174	chr7:108324174:A:G	rs4727708	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	108395716	108395717	chr7:108395717:G:A	rs12669879	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr7	108434075	108434076	chr7:108434076:C:A	rs10264851	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	109009814	109009815	chr7:109009815:A:G	rs4727720	A	G	G	Sox1.mouse_HMG_2	11	1	+	2.482721662920583	2.482721662920583	GTGACTCCCATACAT
chr7	109231875	109231876	chr7:109231876:T:C	rs148784959	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.339190413451842	4.464578070729106	TTGAATCACATTGAT
chr7	109731416	109731417	chr7:109731417:T:A	rs2203674	T	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	110592566	110592567	chr7:110592567:T:A	rs141629493	T	A	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr7	110832602	110832603	chr7:110832603:C:T	rs1106774	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr7	111004517	111004518	chr7:111004518:G:C	rs917763	G	C	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	111083596	111083597	chr7:111083597:C:T	rs77693481	C	T	C	Sox1.mouse_HMG_2	8	1	+	8.421803020385635	2.777376330003647	CTGACTTGCATTCTA
chr7	111083614	111083615	chr7:111083615:T:C	rs74973115	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	111239013	111239014	chr7:111239014:T:G	rs37714	T	G	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr7	111275201	111275202	chr7:111275202:A:C	rs139993984	A	C	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	111363114	111363115	chr7:111363115:A:G	rs79575423	A	G	A	Sox1.mouse_HMG_2	5	1	-	5.7591779651419595	-1.149576814173261	TTGGCTTGCATTCAT
chr7	111650845	111650846	chr7:111650846:G:T	rs974452891	G	T	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	111985913	111985914	chr7:111985914:T:C	rs73430830	T	C	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	112005499	112005500	chr7:112005500:G:A	rs147226736	G	A	G	Sox1.mouse_HMG_2	13	1	+	4.409010064464543	9.355127752237193	ATGAATACCATTAGC
chr7	112132459	112132460	chr7:112132460:T:C	rs78135136	T	C	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	112199367	112199368	chr7:112199368:G:A	rs10248735	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	112286447	112286448	chr7:112286448:G:A	rs78451118	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	112420674	112420675	chr7:112420675:C:T	rs28594984	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	112420693	112420694	chr7:112420694:T:C	rs114081746	T	C	T	Sox1.mouse_HMG_2	4	1	-	8.07065619852835	1.2492434293682797	ATGAATAGAAGTCAG
chr7	112628837	112628838	chr7:112628838:G:A	rs2520568	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	112709746	112709747	chr7:112709747:C:T	rs10261844	C	T	c	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr7	112799540	112799541	chr7:112799541:C:A	rs116278977	C	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	113102747	113102748	chr7:113102748:A:G	rs10278935	A	G	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	113368259	113368260	chr7:113368260:A:G	rs7790807	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	113375276	113375277	chr7:113375277:T:G	rs13230022	T	G	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	113844501	113844502	chr7:113844502:C:G	rs4371944	C	G	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	113873772	113873773	chr7:113873773:T:C	rs10223945	T	C	T	Sox1.mouse_HMG_2	7	1	-	4.37281786003557	3.671763040494494	CTGACTAACCTTCTT
chr7	114044216	114044217	chr7:114044217:C:T	rs149004186	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr7	114416563	114416564	chr7:114416564:G:C	rs10241421	G	C	G	Sox1.mouse_HMG_2	2	1	+	4.4562719418802486	-0.9363449929661897	TTGAATCACTTTCAC
chr7	114650692	114650693	chr7:114650693:A:G	rs1456029	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	114657124	114657125	chr7:114657125:G:A	rs936145	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	114660661	114660662	chr7:114660662:T:C	rs12154391	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	114786240	114786241	chr7:114786241:G:T	rs17137266	G	T	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr7	114789192	114789193	chr7:114789193:A:T	rs148003850	A	T	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	115101252	115101253	chr7:115101253:C:T	rs185801249	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	115117799	115117800	chr7:115117800:G:A	rs79381303	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr7	115636052	115636053	chr7:115636053:C:T	rs1026702273	C	T	C	Sox1.mouse_HMG_2	8	1	+	6.186064978211385	0.5416382878293974	ATGAACTCCATTCTT
chr7	115678407	115678408	chr7:115678408:T:A	rs75318878	T	A	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr7	116211122	116211123	chr7:116211123:G:A	rs143664050	G	A	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	116272426	116272427	chr7:116272427:A:G	rs9791626	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr7	116400484	116400485	chr7:116400485:T:C	rs1180286	T	C	C	Sox1.mouse_HMG_2	11	1	+	11.169558880876789	4.260804101561567	GTGAATTACATTCTA
chr7	116511100	116511101	chr7:116511101:T:C	rs6466579	T	C	T	Sox1.mouse_HMG_2	9	1	-	12.040465498336749	5.13171071902153	ATAAATTACATTCAT
chr7	116570325	116570326	chr7:116570326:T:C	rs112353092	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	117124867	117124868	chr7:117124868:C:T	rs186146156	C	T	c	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	117274042	117274043	chr7:117274043:G:A	rs186214842	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	117282684	117282685	chr7:117282685:C:A	rs78881013	C	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr7	117362943	117362944	chr7:117362944:T:C	rs6966836	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr7	117467652	117467653	chr7:117467653:C:A	rs43033	C	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr7	117795909	117795910	chr7:117795910:T:C	rs28626909	T	C	C	Sox1.mouse_HMG_2	11	1	+	2.8788948908723655	-4.029859888442854	CTGACTCCCAATCAT
chr7	117975262	117975263	chr7:117975263:T:C	rs10226992	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr7	117996368	117996369	chr7:117996369:T:C	rs915161657	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	118153823	118153824	chr7:118153824:A:G	rs555769118	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	118196364	118196365	chr7:118196365:T:C	rs62466476	T	C	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr7	118711756	118711757	chr7:118711757:A:G	rs4730888	A	G	a	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr7	119665953	119665954	chr7:119665954:T:G	rs148103724	T	G	T	Sox1.mouse_HMG_2	9	1	-	5.089388656356694	-1.819366122958526	AGGAATTGCAGTCTT
chr7	119943913	119943914	chr7:119943914:C:T	rs59779536	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	120733728	120733729	chr7:120733729:C:T	rs7807447	C	T	C	Sox1.mouse_HMG_2	0	1	-	5.87607999366609	6.88031622630129	GAGAATAAAATTCAG
chr7	120794698	120794699	chr7:120794699:A:G	rs75293827	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.029612555126681	-1.7918002140333917	CTGAATATCAGTGAA
chr7	120989426	120989427	chr7:120989427:T:C	rs2525740	T	C	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	121015621	121015622	chr7:121015622:G:T	rs4730984	G	T	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	121021370	121021371	chr7:121021371:T:G	rs7778149	T	G	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	121306699	121306700	chr7:121306700:C:T	rs6980043	C	T	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	121438090	121438091	chr7:121438091:G:A	rs9656283	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	121506098	121506099	chr7:121506099:T:C	rs7787312	T	C	C	Sox1.mouse_HMG_2	9	1	-	6.488935734133059	-0.4198190451821623	TTGTATAACATTCTT
chr7	121510720	121510721	chr7:121510721:C:T	rs6960065	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	121634987	121634988	chr7:121634988:T:C	rs12706362	T	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	121650390	121650391	chr7:121650391:C:T	rs12533059	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	121798964	121798965	chr7:121798965:A:G	rs11983105	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	121824698	121824699	chr7:121824699:C:T	rs12111892	C	T	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	121874271	121874272	chr7:121874272:T:C	rs73434996	T	C	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	122200677	122200678	chr7:122200678:G:A	rs1158269	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr7	122257283	122257284	chr7:122257284:A:G	rs59757897	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	122749342	122749343	chr7:122749343:T:A	rs2190252	T	A	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	122843186	122843187	chr7:122843187:A:T	rs2501450	A	T	A	Sox1.mouse_HMG_2	14	1	-	6.600183399883354	5.282474035200668	TTGTCTAGCATTCAT
chr7	123372606	123372607	chr7:123372607:A:C	rs3213708	A	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	123581179	123581180	chr7:123581180:T:A	rs79891719	T	A	T	Sox1.mouse_HMG_2	3	1	-	3.1278297119007106	-3.780925067414508	CTGAGCAACATTCAT
chr7	123699866	123699867	chr7:123699867:C:T	rs7798111	C	T	C	Sox1.mouse_HMG_2	8	1	+	3.9816725187387796	-1.6627541716432077	ATGAATTTCATTAGT
chr7	123699887	123699888	chr7:123699888:T:A	rs574395125	T	A	T	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	123712252	123712253	chr7:123712253:T:C	rs2215555	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr7	123808370	123808371	chr7:123808371:T:G	rs78500726	T	G	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	124208386	124208387	chr7:124208387:C:A	rs6974549	C	A	C	Sox1.mouse_HMG_2	12	1	-	4.30570880649865	6.533570353296758	ATGAATAACATTGCT
chr7	124801343	124801344	chr7:124801344:T:C	rs1034795	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr7	124801347	124801348	chr7:124801348:A:T	rs1034794	A	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	125224172	125224173	chr7:125224173:T:A	rs73440532	T	A	-	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	125358484	125358485	chr7:125358485:C:T	rs6960512	C	T	T	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	125844314	125844315	chr7:125844315:T:C	rs1419592	T	C	T	Sox1.mouse_HMG_2	9	1	-	10.151415520674332	3.242660741359114	GTGAATTTCATTTAT
chr7	126114054	126114055	chr7:126114055:C:G	rs10258634	C	G	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	126574943	126574944	chr7:126574944:C:T	rs11971474	C	T	T	Sox1.mouse_HMG_2	12	1	+	4.845436326655686	0.17284922298743044	ATGACTCACAGTCTT
chr7	126635803	126635804	chr7:126635804:C:A	rs6946642	C	A	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	126651167	126651168	chr7:126651168:C:T	rs10954131	C	T	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	126790944	126790945	chr7:126790945:C:A	rs10248154	C	A	c	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	127245664	127245665	chr7:127245665:A:G	rs17862333	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr7	127256490	127256491	chr7:127256491:G:T	rs17866960	G	T	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	127626827	127626828	chr7:127626828:T:C	rs806190	T	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	127779182	127779183	chr7:127779183:A:G	rs6968199	A	G	A	Sox1.mouse_HMG_2	10	1	-	7.476662167354995	0.6287205890747137	GTCACTACCATTCAC
chr7	127940835	127940836	chr7:127940836:C:T	rs150479109	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	127977068	127977069	chr7:127977069:C:T	rs1193336	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr7	128075112	128075113	chr7:128075113:A:C	rs322833	A	C	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	128135076	128135077	chr7:128135077:A:G	rs56266490	A	G	A	Sox1.mouse_HMG_2	5	1	+	4.634812797804244	4.634812797804244	TTGAAAAGCATTCTG
chr7	128218114	128218115	chr7:128218115:G:A	rs78332539	G	A	G	Sox1.mouse_HMG_2	8	1	-	10.566681168486772	4.922254478104784	ATAAATGACATTCAC
chr7	128288721	128288722	chr7:128288722:C:T	rs76284662	C	T	C	Sox1.mouse_HMG_2	4	1	+	4.200688631012533	-0.23866307028061817	ATGACTTACATGCTT
chr7	128705116	128705117	chr7:128705117:G:T	rs72607753	G	T	.	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr7	128781178	128781179	chr7:128781179:G:A	rs73238116	G	A	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	128847838	128847839	chr7:128847839:G:A	rs2291568	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	128863729	128863730	chr7:128863730:T:C	rs112768864	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	129164199	129164200	chr7:129164200:A:G	rs7798321	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.1278276580143993	-3.69358511114567	GATAATAGCATTCAG
chr7	129185393	129185394	chr7:129185394:G:A	rs78721167	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr7	129271848	129271849	chr7:129271849:A:C	chr7:129271849:A:C	A	C	A	Sox1.mouse_HMG_2	9	1	+	5.165339349404433	-1.743415429910788	ATGAATTACACTTAT
chr7	129440778	129440779	chr7:129440779:A:G	rs17552854	A	G	A	Sox1.mouse_HMG_2	14	1	-	8.35817762380151	7.483565281078773	ATAACTGGCATTCAT
chr7	129618385	129618386	chr7:129618386:A:G	rs76450145	A	G	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	129646595	129646596	chr7:129646596:A:G	rs6949152	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr7	129690512	129690513	chr7:129690513:C:T	rs3735006	C	T	C	Sox1.mouse_HMG_2	0	1	+	3.850270206788605	3.5843270130191724	CGGAATTCCAGTCTC
chr7	129753321	129753322	chr7:129753322:G:T	rs11763880	G	T	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr7	129758680	129758681	chr7:129758681:C:T	rs28480046	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	129758708	129758709	chr7:129758709:G:C	rs9649538	G	C	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	130091714	130091715	chr7:130091715:C:T	rs17164379	C	T	T	Sox1.mouse_HMG_2	14	1	-	7.09504994981699	6.930408701922042	ATTACTAACATTCAG
chr7	130271255	130271256	chr7:130271256:T:A	rs143924793	T	A	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	130276674	130276675	chr7:130276675:T:C	rs17590	T	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	130348847	130348848	chr7:130348848:A:T	rs1009905	A	T	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	130419471	130419472	chr7:130419472:C:T	rs186975929	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	130894402	130894403	chr7:130894403:G:A	rs7781295	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr7	130944733	130944734	chr7:130944734:T:C	rs2293748	T	C	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	130989376	130989377	chr7:130989377:T:G	rs372941352	T	G	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	131012064	131012065	chr7:131012065:T:C	rs115814205	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	131082037	131082038	chr7:131082038:A:C	rs6467345	A	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	131327250	131327251	chr7:131327251:G:A	rs115993798	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	131365998	131365999	chr7:131365999:G:A	rs4099560	G	A	G	Sox1.mouse_HMG_2	12	1	-	2.133696745200109	-2.5388903584681457	ATGAAGAGCTTTCAC
chr7	131366005	131366006	chr7:131366006:C:T	rs970918505	C	T	C	Sox1.mouse_HMG_2	5	1	-	2.133696745200109	2.133696745200109	ATGAAGAGCTTTCAC
chr7	131443690	131443691	chr7:131443691:T:C	rs10224156	T	C	C	Sox1.mouse_HMG_2	7	1	-	3.581767683931803	2.8807128643907283	TGGAATAACATGCAG
chr7	131557026	131557027	chr7:131557027:T:C	rs141652944	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	131655034	131655035	chr7:131655035:G:A	chr7:131655035:G:A	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr7	131775850	131775851	chr7:131775851:C:T	rs60381542	C	T	C	Sox1.mouse_HMG_2	2	1	+	4.068276340536776	2.564198943760502	TTCACTCCCATTCAT
chr7	131849009	131849010	chr7:131849010:C:G	rs10264040	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	131849056	131849057	chr7:131849057:G:A	rs2333896	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	131925099	131925100	chr7:131925100:A:T	rs2059454	A	T	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	131925138	131925139	chr7:131925139:T:C	rs2059453	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	132067433	132067434	chr7:132067434:C:T	rs79840332	C	T	C	Sox1.mouse_HMG_2	9	1	-	7.777020311607231	14.68577509092245	GTGAATGCCGTTCAT
chr7	132106961	132106962	chr7:132106962:T:C	rs281902	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	132165016	132165017	chr7:132165017:G:T	rs145860702	G	T	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	132387806	132387807	chr7:132387807:T:C	rs75598664	T	C	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	132440098	132440099	chr7:132440099:G:C	rs192709839	G	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr7	132469450	132469451	chr7:132469451:C:T	rs76643022	C	T	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr7	132581218	132581219	chr7:132581219:A:G	rs12533690	A	G	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	132714387	132714388	chr7:132714388:C:T	chr7:132714388:C:T	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	132718125	132718126	chr7:132718126:T:C	rs583367	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	133583710	133583711	chr7:133583711:G:T	rs3909550	G	T	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	133588281	133588282	chr7:133588282:T:A	rs62470021	T	A	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	133676113	133676114	chr7:133676114:T:C	rs10263225	T	C	T	Sox1.mouse_HMG_2	11	1	+	7.58398715595836	0.6752323766431393	GAGAATTGCAGTCAT
chr7	133927434	133927435	chr7:133927435:G:A	rs6955707	G	A	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr7	134245344	134245345	chr7:134245345:C:T	rs76169021	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	134301481	134301482	chr7:134301482:A:G	rs2244548	A	G	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	134565672	134565673	chr7:134565673:A:G	rs151297697	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	134612050	134612051	chr7:134612051:A:G	rs7788830	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr7	134728250	134728251	chr7:134728251:C:T	rs4732051	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr7	134755648	134755649	chr7:134755649:A:G	rs6958004	A	G	A	Sox1.mouse_HMG_2	14	1	-	5.213889430579022	4.339277087856286	CTGACTGCCAGTTAT
chr7	134787797	134787798	chr7:134787798:G:C	rs3800708	G	C	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	134787808	134787809	chr7:134787809:C:T	rs3800709	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr7	134865086	134865087	chr7:134865087:A:G	rs3800745	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	134986055	134986056	chr7:134986056:G:A	rs2718150	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr7	135075952	135075953	chr7:135075953:A:G	rs7798553	A	G	G	Sox1.mouse_HMG_2	4	1	+	4.469161228473888	-2.352251540686185	GGGAATCACAGTCAT
chr7	135146885	135146886	chr7:135146886:T:C	rs75952361	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr7	135147797	135147798	chr7:135147798:G:C	rs751551076	G	C	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	135168478	135168479	chr7:135168479:A:G	rs17168271	A	G	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	135318182	135318183	chr7:135318183:G:A	rs10263586	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	135371362	135371363	chr7:135371363:A:C	rs116539335	A	C	A	Sox1.mouse_HMG_2	5	1	-	6.574419835904008	-0.33433494341121317	TAGAATAGCATTTAT
chr7	135548342	135548343	chr7:135548343:A:G	rs3112384	A	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	135745931	135745932	chr7:135745932:T:C	rs150596528	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr7	135965614	135965615	chr7:135965615:T:C	rs10261276	T	C	t	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	136071510	136071511	chr7:136071511:A:G	rs79590948	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	137032699	137032700	chr7:137032700:T:C	rs13229637	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	137147552	137147553	chr7:137147553:C:T	rs832968	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	137737398	137737399	chr7:137737399:A:T	rs9784934	A	T	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	137862572	137862573	chr7:137862573:T:A	rs76858800	T	A	T	Sox1.mouse_HMG_2	13	1	-	3.3738279994989364	0.17946444634064418	CAGAGTAGCATTCAA
chr7	137874708	137874709	chr7:137874709:T:C	rs3735016	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	137887184	137887185	chr7:137887185:C:T	rs6963146	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	137967125	137967126	chr7:137967126:A:G	chr7:137967126:A:G	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	137986793	137986794	chr7:137986794:A:G	rs11770714	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	138125014	138125015	chr7:138125015:T:C	rs6942538	T	C	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	138127121	138127122	chr7:138127122:T:C	rs2440799	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr7	138161934	138161935	chr7:138161935:T:A	rs74734889	T	A	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	138161940	138161941	chr7:138161941:A:T	rs560661099	A	T	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	138258033	138258034	chr7:138258034:G:A	rs74621719	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr7	138306617	138306618	chr7:138306618:G:T	rs409813	G	T	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	138306624	138306625	chr7:138306625:G:C	rs10244164	G	C	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr7	138317336	138317337	chr7:138317337:A:G	rs368043	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	138691081	138691082	chr7:138691082:C:T	rs296912	C	T	T	Sox1.mouse_HMG_2	8	1	+	5.273631874654961	-0.37079481572702633	CTGAATTGCACTCTT
chr7	138834937	138834938	chr7:138834938:C:T	rs73168924	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	139366263	139366264	chr7:139366264:A:G	rs117900283	A	G	A	Sox1.mouse_HMG_2	11	1	-	3.8002065988656697	-3.10854818044955	TTAAATTCCTTTCAT
chr7	139367537	139367538	chr7:139367538:C:T	rs17691238	C	T	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr7	139367563	139367564	chr7:139367564:T:A	rs10271297	T	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr7	139447813	139447814	chr7:139447814:G:A	rs10277605	G	A	g	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	139647814	139647815	chr7:139647815:T:C	rs73156868	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	139818765	139818766	chr7:139818766:G:A	rs76278415	G	A	g	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	139843711	139843712	chr7:139843712:C:T	rs6972693	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	140164961	140164962	chr7:140164962:T:C	rs62491434	T	C	C	Sox1.mouse_HMG_2	14	1	-	7.861245952158069	8.025887200053017	CTGATTATCATTCAA
chr7	140164995	140164996	chr7:140164996:A:T	rs62491435	A	T	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	140349120	140349121	chr7:140349121:A:G	rs189695004	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	140480376	140480377	chr7:140480377:T:C	rs10808045	T	C	C	Sox1.mouse_HMG_2	4	1	-	5.8634674947415935	-0.9579452744184793	CGGAATTTCATTCTG
chr7	140624011	140624012	chr7:140624012:C:T	rs141418089	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	140624021	140624022	chr7:140624022:A:G	rs269232	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr7	140667352	140667353	chr7:140667353:C:T	rs10260676	C	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	140745520	140745521	chr7:140745521:T:C	rs907094688	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr7	141223613	141223614	chr7:141223614:G:A	rs11978917	G	A	g	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	141873057	141873058	chr7:141873058:A:G	rs1285895	A	G	a	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr7	142046313	142046314	chr7:142046314:T:C	rs10258756	T	C	C	Sox1.mouse_HMG_2	0	1	+	5.602603610307859	5.868546804077291	TTGACTTTCTTTCAT
chr7	142391471	142391472	chr7:142391472:G:A	rs909092	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	142483027	142483028	chr7:142483028:G:A	rs376682174	G	A	.	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	142607329	142607330	chr7:142607330:C:T	rs199491612	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr7	142650820	142650821	chr7:142650821:G:A	rs2367329	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr7	142762030	142762031	chr7:142762031:G:A	rs1303264691	G	A	G	Sox1.mouse_HMG_2	10	1	+	4.858893776104785	0.7635497135496019	GTGAATATCAGTGAG
chr7	143126834	143126835	chr7:143126835:C:T	rs10281506	C	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr7	143334503	143334504	chr7:143334504:A:G	rs10046517	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	143343481	143343482	chr7:143343482:T:A	rs2367944	T	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr7	143351154	143351155	chr7:143351155:G:A	rs62472680	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr7	143497743	143497744	chr7:143497744:A:G	rs4521681	A	G	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	144031069	144031070	chr7:144031070:C:T	rs10257690	C	T	T	Sox1.mouse_HMG_2	8	1	+	4.557571703993498	-1.086854986388488	GGGACTGACATTCTT
chr7	144033163	144033164	chr7:144033164:A:G	rs2158575	A	G	A	Sox1.mouse_HMG_2	7	1	+	4.610268767137078	3.909213947596003	ACAAATAACAGTCAC
chr7	144063907	144063908	chr7:144063908:G:A	rs2951354	G	A	g	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr7	144113805	144113806	chr7:144113806:T:C	rs77101462	T	C	t	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	144384527	144384528	chr7:144384528:C:T	rs60008677	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	144875100	144875101	chr7:144875101:C:T	rs2056808	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	144875102	144875103	chr7:144875103:A:G	rs2056807	A	G	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr7	144974583	144974584	chr7:144974584:C:T	rs146020120	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr7	145029003	145029004	chr7:145029004:A:G	rs1357936	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	145511257	145511258	chr7:145511258:G:T	rs56000702	G	T	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	145624963	145624964	chr7:145624964:A:T	rs114057775	A	T	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr7	146205312	146205313	chr7:146205313:A:G	rs68099112	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr7	146216752	146216753	chr7:146216753:A:T	rs802536	A	T	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr7	146224075	146224076	chr7:146224076:A:T	rs2539747	A	T	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	146592694	146592695	chr7:146592695:A:G	rs402278	A	G	G	Sox1.mouse_HMG_2	5	1	-	4.388213377277084	-2.5205414020381363	GTAAATTGCAGTCTT
chr7	146661065	146661066	chr7:146661066:C:T	rs79210156	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	146873529	146873530	chr7:146873530:G:C	rs17170284	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.021160316108605	-2.879288334357758	CTGAATCGCATGCAC
chr7	147050496	147050497	chr7:147050497:G:A	rs17170312	G	A	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	147190649	147190650	chr7:147190650:C:G	rs10239280	C	G	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr7	147271465	147271466	chr7:147271466:C:G	rs141073227	C	G	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr7	147334729	147334730	chr7:147334730:T:C	rs826796	T	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr7	147408815	147408816	chr7:147408816:A:G	rs7803877	A	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr7	147584665	147584666	chr7:147584666:G:T	chr7:147584666:G:T	G	T	G	Sox1.mouse_HMG_2	8	1	-	4.789284145086897	-0.0602126704252027	GGGAATTCCATTTAC
chr7	147595252	147595253	chr7:147595253:T:C	rs1013872	T	C	T	Sox1.mouse_HMG_2	6	1	+	6.186064978211387	2.674655410264413	ATGAATTCCCTTCTT
chr7	147669637	147669638	chr7:147669638:C:T	rs151010942	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr7	147701016	147701017	chr7:147701017:A:G	rs148720644	A	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr7	147991054	147991055	chr7:147991055:G:A	rs116951404	G	A	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr7	148016849	148016850	chr7:148016850:T:C	rs12674206	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.62181975136434	-2.286935027950881	TGGAATAGCATTCCT
chr7	148016863	148016864	chr7:148016864:T:C	rs12674208	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	148115413	148115414	chr7:148115414:G:A	rs17548298	G	A	G	Sox1.mouse_HMG_2	13	1	+	3.137764959781329	8.083882647553978	GTTAATTGCATTCGT
chr7	148233382	148233383	chr7:148233383:A:T	rs148816138	A	T	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr7	148276576	148276577	chr7:148276577:G:A	rs117798084	G	A	G	Sox1.mouse_HMG_2	10	1	+	2.919509471223649	-1.1758345913315345	GCGAATCGCAGTCAG
chr7	148385331	148385332	chr7:148385332:T:C	rs1637837	T	C	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	148395890	148395891	chr7:148395891:G:A	rs10242598	G	A	G	Sox1.mouse_HMG_2	0	1	+	3.271255537534135	4.275491770169337	GCGAATTTCTTTCAT
chr7	148465617	148465618	chr7:148465618:A:C	rs12531221	A	C	-	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr7	148863936	148863937	chr7:148863937:G:C	rs10259102	G	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	148863965	148863966	chr7:148863966:T:A	rs1880356	T	A	T	Sox1.mouse_HMG_2	10	1	+	4.096333836742683	-2.7516077415375992	ATGAACAGCATTCGC
chr7	149135772	149135773	chr7:149135773:A:G	rs34212787	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr7	149230783	149230784	chr7:149230784:G:T	rs1724333	G	T	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	149236850	149236851	chr7:149236851:C:A	rs7779475	C	A	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	149680790	149680791	chr7:149680791:T:C	rs12537211	T	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr7	149751073	149751074	chr7:149751074:A:G	rs4727097	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	149886080	149886081	chr7:149886081:C:T	rs10807976	C	T	.	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	150169545	150169546	chr7:150169546:C:T	rs182405332	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	150362512	150362513	chr7:150362513:T:C	rs17173682	T	C	C	Sox1.mouse_HMG_2	11	1	+	3.4302034479560612	-3.4785513313591583	CTGAATAATTTTCAC
chr7	150495104	150495105	chr7:150495105:T:C	rs10227257	T	C	-	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	150911299	150911300	chr7:150911300:A:T	rs142883854	A	T	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	150941395	150941396	chr7:150941396:G:A	rs2907948	G	A	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	151180794	151180795	chr7:151180795:G:A	rs67235637	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr7	151298160	151298161	chr7:151298161:T:C	rs219270	T	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr7	151334289	151334290	chr7:151334290:G:A	rs62492430	G	A	g	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	151366586	151366587	chr7:151366587:G:A	rs184600650	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr7	151445891	151445892	chr7:151445892:A:C	rs12539880	A	C	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr7	151455794	151455795	chr7:151455795:C:T	rs73476481	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	151512687	151512688	chr7:151512688:C:T	rs2374261	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	151515137	151515138	chr7:151515138:A:G	rs12112134	A	G	G	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	151515174	151515175	chr7:151515175:A:G	rs73156241	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr7	151518367	151518368	chr7:151518368:T:C	rs56984257	T	C	T	Sox1.mouse_HMG_2	6	1	-	3.621594696176745	2.1814172743081066	GTGACTATCTGTCAT
chr7	151630408	151630409	chr7:151630409:G:A	rs4725417	G	A	-	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr7	151690862	151690863	chr7:151690863:G:A	rs1358403293	G	A	-	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	151690877	151690878	chr7:151690878:C:T	rs2024266	C	T	-	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr7	151802759	151802760	chr7:151802760:C:T	rs149332435	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	151824468	151824469	chr7:151824469:C:T	rs139958503	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr7	152176767	152176768	chr7:152176768:C:T	rs6464211	C	T	T	Sox1.mouse_HMG_2	0	1	+	4.924502704343726	4.658559510574292	CTGAATGACATTTGC
chr7	152581302	152581303	chr7:152581303:A:G	chr7:152581303:A:G	A	G	A	Sox1.mouse_HMG_2	9	1	+	7.422026495114866	0.5132717157996457	TTGACTTACAGTCTT
chr7	152665924	152665925	chr7:152665925:T:C	rs3111471	T	C	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr7	152751914	152751915	chr7:152751915:A:G	rs73488898	A	G	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr7	152754901	152754902	chr7:152754902:T:C	rs58020309	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.258322068412169	-0.6877956193604787	ATAAACACCATTCAA
chr7	152804790	152804791	chr7:152804791:G:T	rs11760209	G	T	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr7	152864527	152864528	chr7:152864528:G:A	rs7792217	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	152911220	152911221	chr7:152911221:G:A	rs6954929	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr7	153378043	153378044	chr7:153378044:A:G	rs4726291	A	G	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr7	153523972	153523973	chr7:153523973:C:T	rs71543533	C	T	C	Sox1.mouse_HMG_2	5	1	+	1.953944482312686	8.862699261627908	GGGAACGCCATTCAC
chr7	154766220	154766221	chr7:154766221:A:G	rs6966524	A	G	G	Sox1.mouse_HMG_2	3	1	+	9.050345041378385	2.141590262063164	TGGAATGACATTCAG
chr7	154879986	154879987	chr7:154879987:C:G	rs3807293	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr7	154918586	154918587	chr7:154918587:A:G	rs884687	A	G	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr7	154928563	154928564	chr7:154928564:A:G	rs56348758	A	G	A	Sox1.mouse_HMG_2	6	1	-	4.850508181781543	1.3390986138345706	ATGAATTTCATGCTC
chr7	155082203	155082204	chr7:155082204:T:C	rs980309	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	155082207	155082208	chr7:155082208:G:A	rs1946917	G	A	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr7	155144894	155144895	chr7:155144895:G:A	rs2969549	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr7	155371017	155371018	chr7:155371018:T:C	rs67853310	T	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr7	155487101	155487102	chr7:155487102:G:A	rs115028074	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr7	155508242	155508243	chr7:155508243:A:G	rs7779639	A	G	A	Sox1.mouse_HMG_2	6	1	+	7.920916695835193	6.480739273966554	GAGACTAGCATTCAC
chr7	155603899	155603900	chr7:155603900:C:T	rs1378382567	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr7	155753413	155753414	chr7:155753414:T:A	rs28431141	T	A	T	Sox1.mouse_HMG_2	7	1	-	7.695265917504349	6.837636743129172	CTGAATGACACTCAC
chr7	155816363	155816364	chr7:155816364:T:A	rs1302921	T	A	t	Sox1.mouse_HMG_2	0	1	-	4.202100397718285	3.2672809982304933	AGGAATCCCAGTCAC
chr7	155847980	155847981	chr7:155847981:C:T	rs12532198	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr7	155900636	155900637	chr7:155900637:A:G	rs62481732	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr7	155982963	155982964	chr7:155982964:G:A	rs114366262	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr7	155986448	155986449	chr7:155986449:G:A	rs79329808	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr7	156232129	156232130	chr7:156232130:T:A	rs1175443	T	A	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr7	156251330	156251331	chr7:156251331:C:T	rs75393775	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr7	156415481	156415482	chr7:156415482:G:A	rs1880342	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr7	156439438	156439439	chr7:156439439:T:C	rs7808469	T	C	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr7	156439472	156439473	chr7:156439473:T:C	rs10279686	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr7	156651650	156651651	chr7:156651651:T:C	rs34281476	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	156897872	156897873	chr7:156897873:A:G	rs116598687	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr7	156937990	156937991	chr7:156937991:T:G	rs2907960	T	G	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr7	156937993	156937994	chr7:156937994:T:C	rs73172008	T	C	T	Sox1.mouse_HMG_2	13	1	-	2.119455526398556	-2.8266621613740925	CTGACATGCAGTCAG
chr7	156984980	156984981	chr7:156984981:A:G	rs143957865	A	G	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	157307725	157307726	chr7:157307726:G:A	rs34929574	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr7	157353351	157353352	chr7:157353352:A:G	rs6965468	A	G	g	Sox1.mouse_HMG_2	9	1	+	8.67794541766998	1.769190638354757	CTGTATACCATTCAC
chr7	157422708	157422709	chr7:157422709:G:C	rs117553662	G	C	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr7	157484727	157484728	chr7:157484728:G:T	rs77676146	G	T	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr7	157489707	157489708	chr7:157489708:A:T	rs79593883	A	T	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr7	157519293	157519294	chr7:157519294:A:C	rs4716482	A	C	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr7	157773327	157773328	chr7:157773328:T:C	rs57948129	T	C	C	Sox1.mouse_HMG_2	0	1	-	2.6731587538679875	1.6689225212327865	ATGACTCCCACTCAC
chr7	157773335	157773336	chr7:157773336:A:G	rs73165841	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr7	157857087	157857088	chr7:157857088:G:A	rs374065679	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	157882015	157882016	chr7:157882016:T:C	rs4645466	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr7	157929925	157929926	chr7:157929926:C:A	rs72621121	C	A	C	Sox1.mouse_HMG_2	8	1	-	2.993017663115611	3.0671256352693326	CTGAATTCGCTTCAT
chr7	157933044	157933045	chr7:157933045:G:A	rs117375918	G	A	-	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr7	157939060	157939061	chr7:157939061:T:C	rs7805765	T	C	N	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	157939136	157939137	chr7:157939137:C:T	rs10949674	C	T	-	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr7	157975704	157975705	chr7:157975705:T:C	rs4716858	T	C	T	Sox1.mouse_HMG_2	3	1	-	6.594224107663237	-0.314530671651981	ATGAATACCAGACAC
chr7	157991956	157991957	chr7:157991957:C:T	rs10949682	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr7	158317758	158317759	chr7:158317759:T:A	rs80311153	T	A	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr7	158320697	158320698	chr7:158320698:T:G	rs896779	T	G	T	Sox1.mouse_HMG_2	3	1	-	6.57443208809453	-0.3343226912206908	ATGAATATCATTGTT
chr7	158385006	158385007	chr7:158385007:C:A	rs7455219	C	A	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	158473753	158473754	chr7:158473754:A:G	rs1476201	A	G	G	Sox1.mouse_HMG_2	13	1	+	3.4968745327860784	-1.4492431549865699	CTGTCTAACAGTCAA
chr7	158735118	158735119	chr7:158735119:A:G	rs533717562	A	G	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr7	158735146	158735147	chr7:158735147:A:G	rs3816458	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.42922760532183	-2.47952717399339	CTAAATAACATACAC
chr7	158735152	158735153	chr7:158735153:T:C	rs3816459	T	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr7	158761394	158761395	chr7:158761395:C:T	rs112709510	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr7	158777179	158777180	chr7:158777180:T:G	rs842442	T	G	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr7	158803614	158803615	chr7:158803615:G:A	rs2788495	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr7	159056412	159056413	chr7:159056413:C:T	rs2730258	C	T	C	Sox1.mouse_HMG_2	8	1	+	5.6143233914103226	-0.03010329897166439	TTGAAAAACATTCTC
chr7	159058542	159058543	chr7:159058543:T:G	rs2098349	T	G	G	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr7	159204079	159204080	chr7:159204080:A:C	rs440097	A	C	A	Sox1.mouse_HMG_2	13	1	+	4.506571576796859	-1.8141444323324876	AAGAATCCCAGTCAC
chr8	250421	250422	chr8:250422:G:C	rs2906336	G	C	.	Sox1.mouse_HMG_2	12	1	-	3.739522792123168	-3.160925858343196	GAGATTAACATTCAA
chr8	250450	250451	chr8:250451:T:C	rs10092114	T	C	.	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	289874	289875	chr8:289875:G:T	rs7826512	G	T	.	Sox1.mouse_HMG_2	7	1	-	3.8382744499085524	4.234959170576622	TTGAATGCCAATCTC
chr8	331571	331572	chr8:331572:T:C	rs6990287	T	C	.	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	347458	347459	chr8:347459:G:A	rs17737638	G	A	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	381306	381307	chr8:381307:C:T	rs17064425	C	T	.	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr8	495790	495791	chr8:495791:G:A	rs11781389	G	A	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	540863	540864	chr8:540864:G:A	rs11996757	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	622367	622368	chr8:622368:G:C	rs114773783	G	C	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	688872	688873	chr8:688873:C:A	rs1669665	C	A	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	688902	688903	chr8:688903:T:A	rs1669664	T	A	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	690200	690201	chr8:690201:C:T	rs77271605	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	933161	933162	chr8:933162:T:C	rs905422	T	C	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	982117	982118	chr8:982118:C:G	rs62486457	C	G	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	1071026	1071027	chr8:1071027:G:A	rs17815066	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	1187160	1187161	chr8:1187161:T:C	rs61384416	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	1346735	1346736	chr8:1346736:A:C	rs7838343	A	C	-	Sox1.mouse_HMG_2	3	1	+	7.593383085090517	0.6846283057752961	CTGAATTGCACTCAC
chr8	1353407	1353408	chr8:1353408:A:G	rs7017736	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	1355726	1355727	chr8:1355727:C:G	rs11784555	C	G	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	1408002	1408003	chr8:1408003:A:G	rs34659395	A	G	A	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	1476411	1476412	chr8:1476412:C:T	rs780870739	C	T	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	1526807	1526808	chr8:1526808:T:G	rs11775451	T	G	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	1629302	1629303	chr8:1629303:T:A	rs117448935	T	A	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	1652300	1652301	chr8:1652301:A:G	rs9644314	A	G	a	Sox1.mouse_HMG_2	4	1	+	3.987811596523239	-2.833601172636835	ATCCATTCCATTCAT
chr8	1671440	1671441	chr8:1671441:G:C	rs62483123	G	C	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	1682302	1682303	chr8:1682303:C:T	rs4875888	C	T	T	Sox1.mouse_HMG_2	0	1	-	4.299114516745566	5.30335074938077	GGGACTTTCATTCTT
chr8	1714985	1714986	chr8:1714986:A:G	rs7822871	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	1750744	1750745	chr8:1750745:A:G	rs4623455	A	G	A	Sox1.mouse_HMG_2	1	1	-	5.134205809215423	0.4902135017221908	TTGACTATCATTAAA
chr8	1807258	1807259	chr8:1807259:G:A	rs4875809	G	A	A	Sox1.mouse_HMG_2	2	1	+	8.47877686478877	3.833374331772552	GTGAATAAAATTCTT
chr8	1978289	1978290	chr8:1978290:G:C	rs9657382	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	2021835	2021836	chr8:2021836:C:A	rs576268517	C	A	c	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	2021871	2021872	chr8:2021872:C:G	rs13278081	C	G	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr8	2063300	2063301	chr8:2063301:T:C	rs112930195	T	C	t	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	2161879	2161880	chr8:2161880:T:C	rs62501424	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	2194251	2194252	chr8:2194252:T:C	rs1822037	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	2198935	2198936	chr8:2198936:A:G	rs80120477	A	G	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr8	2215729	2215730	chr8:2215730:C:T	rs35880828	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	2237320	2237321	chr8:2237321:T:A	rs62502201	T	A	T	Sox1.mouse_HMG_2	10	1	+	4.730904254974278	-2.1170373233060027	CTCACTCACATTCAT
chr8	2352884	2352885	chr8:2352885:C:G	rs766331329	C	G	-	Sox1.mouse_HMG_2	7	1	+	8.650757936872866	8.346387837999862	ATGAATTCCATTCCA
chr8	2662871	2662872	chr8:2662872:G:A	rs4075491	G	A	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	2889888	2889889	chr8:2889889:C:G	rs13268697	C	G	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	2948101	2948102	chr8:2948102:G:A	rs341723	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	2953002	2953003	chr8:2953003:G:C	rs668789	G	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr8	3177755	3177756	chr8:3177756:A:G	rs7004481	A	G	G	Sox1.mouse_HMG_2	4	1	+	7.572227273312301	0.7508145041522288	TTCAATAACAGTCAC
chr8	3177777	3177778	chr8:3177778:T:G	rs58002274	T	G	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	3334724	3334725	chr8:3334725:C:T	rs7843496	C	T	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr8	3627208	3627209	chr8:3627209:A:G	rs10108630	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	3690504	3690505	chr8:3690505:A:G	rs2086532	A	G	a	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	3763020	3763021	chr8:3763021:T:C	rs56027527	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	3780769	3780770	chr8:3780770:A:C	rs10109516	A	C	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	3780814	3780815	chr8:3780815:C:T	rs56204251	C	T	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	3909353	3909354	chr8:3909354:C:G	rs3877992	C	G	C	Sox1.mouse_HMG_2	0	1	+	5.17740350204807	4.842043475131226	CTGACTCACATTCGT
chr8	3909357	3909358	chr8:3909358:C:G	rs2688318	C	G	G	Sox1.mouse_HMG_2	4	1	+	5.17740350204807	0.7380518007549167	CTGACTCACATTCGT
chr8	3923112	3923113	chr8:3923113:A:C	rs1829859	A	C	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	4050794	4050795	chr8:4050795:C:T	rs2554547	C	T	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	4122794	4122795	chr8:4122795:A:G	rs7816211	A	G	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr8	4227447	4227448	chr8:4227448:G:T	rs1700055	G	T	T	Sox1.mouse_HMG_2	6	1	+	7.020636915487562	7.619808902614807	GTGTATGACATTCAG
chr8	4331571	4331572	chr8:4331572:G:A	rs117621302	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	4527952	4527953	chr8:4527953:C:G	rs11997934	C	G	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	4594969	4594970	chr8:4594970:T:G	rs17070718	T	G	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	4614709	4614710	chr8:4614710:G:C	rs2617109	G	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	4625038	4625039	chr8:4625039:C:A	rs1982628	C	A	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	4847160	4847161	chr8:4847161:G:C	rs7820227	G	C	C	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	4900427	4900428	chr8:4900428:A:G	rs4875123	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	5129779	5129780	chr8:5129780:A:G	rs17435605	A	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr8	5145015	5145016	chr8:5145016:G:C	rs1454279	G	C	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	5173429	5173430	chr8:5173430:T:C	rs35525317	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	5487943	5487944	chr8:5487944:A:G	rs10093000	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	5760800	5760801	chr8:5760801:A:C	rs75757730	A	C	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	5808951	5808952	chr8:5808952:T:C	rs7812557	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	6025298	6025299	chr8:6025299:C:A	rs2700749	C	A	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr8	6025357	6025358	chr8:6025358:T:C	rs28758727	T	C	T	Sox1.mouse_HMG_2	7	1	-	3.815411579861826	3.1143567603207516	AAGAATTACATGCAA
chr8	6179091	6179092	chr8:6179092:G:C	rs62505616	G	C	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	6213331	6213332	chr8:6213332:A:C	rs36129144	A	C	A	Sox1.mouse_HMG_2	9	1	+	7.090053748634973	0.1812989693197528	TTGGATGACATTCAG
chr8	6306036	6306037	chr8:6306037:T:C	rs12541032	T	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	6306047	6306048	chr8:6306048:A:T	rs12550393	A	T	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	6306084	6306085	chr8:6306085:A:T	rs76958047	A	T	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	6423930	6423931	chr8:6423931:C:G	rs187609190	C	G	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	6481575	6481576	chr8:6481576:C:T	rs2922815	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	6506462	6506463	chr8:6506463:C:A	rs3020210	C	A	C	Sox1.mouse_HMG_2	7	1	-	3.436136021217093	3.279561666382992	GAGAATTGCATTAAT
chr8	6547425	6547426	chr8:6547426:C:T	rs17553089	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	6676444	6676445	chr8:6676445:G:A	rs12542460	G	A	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr8	6706808	6706809	chr8:6706809:A:C	rs72626604	A	C	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	6836529	6836530	chr8:6836530:G:C	rs73513747	G	C	g	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr8	6856219	6856220	chr8:6856220:C:T	rs141035237	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	6864293	6864294	chr8:6864294:A:C	rs145450037	A	C	A	Sox1.mouse_HMG_2	5	1	-	10.043882483941326	3.1351277046261044	CTGACTTCCATTCTT
chr8	6864304	6864305	chr8:6864305:C:G	rs2702840	C	G	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	6864690	6864691	chr8:6864691:C:T	rs56212491	C	T	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr8	6864725	6864726	chr8:6864726:C:T	rs2702838	C	T	c	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	6864726	6864727	chr8:6864727:A:G	rs55762291	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	6878973	6878974	chr8:6878974:A:T	rs2738181	A	T	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr8	6878975	6878976	chr8:6878976:C:T	rs2738180	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	6960119	6960120	chr8:6960120:G:T	rs111293704	G	T	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	7035683	7035684	chr8:7035684:C:T	rs4576447	C	T	.	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	7355433	7355434	chr8:7355434:G:T	rs1223566227	G	T	g	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	8320583	8320584	chr8:8320584:T:C	rs13276576	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.038872596909364	-2.7825401722507075	TTGCATAATATTCAT
chr8	8330378	8330379	chr8:8330379:T:A	rs57615692	T	A	T	Sox1.mouse_HMG_2	3	1	-	6.151856457940716	-0.7568983213745032	TTGAATTTCATTTTC
chr8	8334586	8334587	chr8:8334587:G:C	rs150362270	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	8484427	8484428	chr8:8484428:T:C	rs543191865	T	C	T	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	8564619	8564620	chr8:8564620:G:T	rs73190521	G	T	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	8577157	8577158	chr8:8577158:T:A	rs112096605	T	A	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	8625176	8625177	chr8:8625177:A:G	rs1879960	A	G	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	8710466	8710467	chr8:8710467:C:G	rs12545771	C	G	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr8	8736736	8736737	chr8:8736737:G:A	rs575895	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	8736743	8736744	chr8:8736744:C:T	rs575920	C	T	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr8	8851548	8851549	chr8:8851549:A:G	rs58512496	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	8872631	8872632	chr8:8872632:A:G	rs11991673	A	G	G	Sox1.mouse_HMG_2	9	1	+	8.59935450255538	1.690599723240159	ATGAACAGCATTCAA
chr8	8880431	8880432	chr8:8880432:G:C	rs79901456	G	C	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	8888230	8888231	chr8:8888231:A:G	rs7013902	A	G	A	Sox1.mouse_HMG_2	13	1	-	6.84955908881961	3.7232066328485547	TTGAATTTAATTCTT
chr8	8925061	8925062	chr8:8925062:G:A	rs994647503	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr8	8973763	8973764	chr8:8973764:G:C	rs78290020	G	C	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	9020856	9020857	chr8:9020857:C:T	rs7008080	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	9030111	9030112	chr8:9030112:G:A	rs78090829	G	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	9055044	9055045	chr8:9055045:T:A	rs143903132	T	A	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	9135043	9135044	chr8:9135044:G:A	rs10104740	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	9149576	9149577	chr8:9149577:C:G	rs1250922041	C	G	C	Sox1.mouse_HMG_2	0	1	+	2.610121802497341	2.2747617755804974	CCGAACTGCATTCAG
chr8	9164422	9164423	chr8:9164423:T:C	rs330945	T	C	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	9248117	9248118	chr8:9248118:T:A	rs17656706	T	A	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr8	9402767	9402768	chr8:9402768:G:A	rs535305248	G	A	G	Sox1.mouse_HMG_2	0	1	-	2.673794206438077	2.4078510126686443	CTGATTTGCATTCGC
chr8	9568187	9568188	chr8:9568188:A:C	rs10088969	A	C	A	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr8	10120549	10120550	chr8:10120550:G:T	rs10503402	G	T	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	10265982	10265983	chr8:10265983:C:G	rs35287467	C	G	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	10279199	10279200	chr8:10279200:G:C	rs11774051	G	C	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	10385163	10385164	chr8:10385164:C:G	rs12682070	C	G	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	10416619	10416620	chr8:10416620:G:A	rs6997671	G	A	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr8	10510450	10510451	chr8:10510451:T:A	chr8:10510451:T:A	T	A	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	10560710	10560711	chr8:10560711:C:G	rs4841381	C	G	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	10561808	10561809	chr8:10561809:C:T	rs4307301	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr8	10561809	10561810	chr8:10561810:C:T	rs4307302	C	T	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	10561829	10561830	chr8:10561830:G:C	rs4623376	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.059404627636186	-2.8410440228301783	TTGACTTCGATTCTT
chr8	11229432	11229433	chr8:11229433:T:C	rs2736313	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	11421031	11421032	chr8:11421032:A:G	rs34906655	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.533186777160448	0.5870690893877996	GTGACTTTCATGCAT
chr8	11421032	11421033	chr8:11421033:T:C	rs141016229	T	C	T	Sox1.mouse_HMG_2	14	1	+	5.533186777160448	4.658574434437711	GTGACTTTCATGCAT
chr8	11429905	11429906	chr8:11429906:T:C	rs73663133	T	C	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	11516046	11516047	chr8:11516047:G:A	rs563827170	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	11553159	11553160	chr8:11553160:A:G	rs2255215	A	G	A	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr8	11650938	11650939	chr8:11650939:C:T	rs6601601	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	11733867	11733868	chr8:11733868:G:A	rs62489347	G	A	G	Sox1.mouse_HMG_2	12	1	-	3.557141489199233	-1.115445614469022	GTGACTTCGAGTCAC
chr8	11736691	11736692	chr8:11736692:T:G	rs11993825	T	G	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	11793789	11793790	chr8:11793790:C:T	rs75224198	C	T	C	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	12131242	12131243	chr8:12131243:C:T	rs4840629	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr8	12573213	12573214	chr8:12573214:G:A	rs4831567	G	A	.	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr8	12813783	12813784	chr8:12813784:C:T	rs11775259	C	T	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	12841070	12841071	chr8:12841071:T:C	rs74355442	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	12841076	12841077	chr8:12841077:G:C	rs112610407	G	C	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	12918954	12918955	chr8:12918955:C:T	rs117047189	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	12936574	12936575	chr8:12936575:T:G	rs2947363	T	G	T	Sox1.mouse_HMG_2	12	1	-	5.63961268860674	12.540061339073103	TTGAATATCATTATT
chr8	12942938	12942939	chr8:12942939:C:G	rs55893547	C	G	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	12979827	12979828	chr8:12979828:T:C	rs73204353	T	C	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	13001998	13001999	chr8:13001999:A:G	rs17123247	A	G	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr8	13073053	13073054	chr8:13073054:C:G	rs13267144	C	G	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	13170402	13170403	chr8:13170403:G:A	rs7828964	G	A	A	Sox1.mouse_HMG_2	7	1	-	4.108669440574179	3.6477249868670714	ATGTATGCCATTTAT
chr8	13193165	13193166	chr8:13193166:C:T	rs7013485	C	T	T	Sox1.mouse_HMG_2	4	1	-	5.194976394657867	12.016389163817943	ATGAGTGACAGTCAA
chr8	13222735	13222736	chr8:13222736:T:G	rs77573827	T	G	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr8	13224614	13224615	chr8:13224615:T:C	rs74541532	T	C	T	Sox1.mouse_HMG_2	8	1	-	5.78884097510686	4.91980312808325	CAGAATAGAATTCAC
chr8	13234096	13234097	chr8:13234097:A:G	rs1188287	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	13366467	13366468	chr8:13366468:G:C	rs10094334	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.242491006457881	-2.657957644008483	TAGAATATCACTCAT
chr8	13472942	13472943	chr8:13472943:T:C	rs62494114	T	C	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	13472951	13472952	chr8:13472952:A:G	rs62494115	A	G	A	Sox1.mouse_HMG_2	6	1	+	8.064288333600851	6.6241109117322114	CTGAATACTAGTCAT
chr8	13548922	13548923	chr8:13548923:A:T	rs57861397	A	T	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	13640501	13640502	chr8:13640502:C:T	rs7014659	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	13640533	13640534	chr8:13640534:G:A	rs28565094	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	13727815	13727816	chr8:13727816:T:A	rs7815737	T	A	T	Sox1.mouse_HMG_2	2	1	-	5.158685029965571	2.9073932313590736	TTAAATTACAGTCTT
chr8	13923294	13923295	chr8:13923295:A:G	rs7819836	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr8	13958390	13958391	chr8:13958391:T:C	rs35687486	T	C	T	Sox1.mouse_HMG_2	11	1	+	5.146890853068086	-1.7618639262471336	GTGGATACCAGTCAA
chr8	14059573	14059574	chr8:14059574:G:A	rs3915658	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	14197774	14197775	chr8:14197775:C:T	rs7821005	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	14227191	14227192	chr8:14227192:C:G	rs111386247	C	G	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	14412477	14412478	chr8:14412478:A:G	rs28539573	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	14422423	14422424	chr8:14422424:C:T	rs12542288	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	14745317	14745318	chr8:14745318:A:C	rs17120202	A	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	15207960	15207961	chr8:15207961:G:T	rs10096451	G	T	T	Sox1.mouse_HMG_2	4	1	-	5.9212678543208455	8.303328922187768	ATGACAGACATTCAC
chr8	15378814	15378815	chr8:15378815:C:T	rs28476679	C	T	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	15442687	15442688	chr8:15442688:T:G	rs17473297	T	G	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	15582698	15582699	chr8:15582699:C:T	rs114626598	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	15586693	15586694	chr8:15586694:T:C	rs17657878	T	C	T	Sox1.mouse_HMG_2	9	1	-	9.345314195431317	2.436559416116098	TTCAATAGCATTCAG
chr8	15702667	15702668	chr8:15702668:C:T	rs901034855	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	15910449	15910450	chr8:15910450:G:A	rs13270925	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	15984863	15984864	chr8:15984864:C:T	rs17614414	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	16015224	16015225	chr8:16015225:G:A	rs79987022	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	16186157	16186158	chr8:16186158:C:T	rs435815	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	16518181	16518182	chr8:16518182:G:A	rs966009550	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	16553250	16553251	chr8:16553251:A:C	rs58016571	A	C	A	Sox1.mouse_HMG_2	6	1	+	3.4397735032746186	-0.9126414994137487	ATGAAAATCATTCCT
chr8	16831872	16831873	chr8:16831873:A:G	rs13253086	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	16831881	16831882	chr8:16831882:G:A	rs117385396	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	16907163	16907164	chr8:16907164:T:C	rs923854	T	C	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	16989316	16989317	chr8:16989317:T:C	rs1721087	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	16997293	16997294	chr8:16997294:C:T	rs10106536	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	17137417	17137418	chr8:17137418:T:C	rs2517050	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	17226494	17226495	chr8:17226495:A:G	rs75199608	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	17365722	17365723	chr8:17365723:A:G	rs61609886	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	17373839	17373840	chr8:17373840:A:G	rs73208980	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	17429063	17429064	chr8:17429064:G:C	rs67305085	G	C	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	17446831	17446832	chr8:17446832:G:C	rs11203860	G	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr8	17465011	17465012	chr8:17465012:T:C	rs115310381	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	17498277	17498278	chr8:17498278:G:C	rs2720548	G	C	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	17578681	17578682	chr8:17578682:C:G	rs2720574	C	G	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	17608592	17608593	chr8:17608593:T:C	rs79604261	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	17608621	17608622	chr8:17608622:C:T	rs1032083674	C	T	C	Sox1.mouse_HMG_2	14	1	+	3.736478914629611	4.6110912573523475	CTAAATAGCATTAAC
chr8	17614404	17614405	chr8:17614405:G:A	rs79564393	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	17662180	17662181	chr8:17662181:T:C	rs1334460657	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	17678084	17678085	chr8:17678085:T:C	rs11203895	T	C	T	Sox1.mouse_HMG_2	14	1	+	4.641212033607064	3.766599690884328	TTAAATACCATCCAT
chr8	17699601	17699602	chr8:17699602:A:G	rs2653202	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	17699635	17699636	chr8:17699636:C:T	rs74344314	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	17707181	17707182	chr8:17707182:T:G	rs78978219	T	G	G	Sox1.mouse_HMG_2	7	1	+	4.375379996734684	4.531954351568785	GTGATTTTCAGTCAC
chr8	17755008	17755009	chr8:17755009:A:G	rs61733696	A	G	A	Sox1.mouse_HMG_2	6	1	+	2.165875359022827	0.725697937154188	CTGAAGAACATGCAC
chr8	17836734	17836735	chr8:17836735:C:G	rs17125625	C	G	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	17880615	17880616	chr8:17880616:C:T	rs2517319	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	17880637	17880638	chr8:17880638:C:T	rs2517320	C	T	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	17910754	17910755	chr8:17910755:G:A	rs411173	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	17922018	17922019	chr8:17922019:C:T	rs114895009	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	18073581	18073582	chr8:18073582:C:T	rs3753117	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	18306728	18306729	chr8:18306729:T:C	rs58057772	T	C	T	Sox1.mouse_HMG_2	11	1	+	3.846271949146341	-3.0624828301688796	GTGAATTTCCTTCTC
chr8	18360304	18360305	chr8:18360305:T:C	rs971770	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	18448521	18448522	chr8:18448522:T:G	rs13277954	T	G	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	18574911	18574912	chr8:18574912:C:G	rs9644607	C	G	C	Sox1.mouse_HMG_2	12	1	+	5.556132496589202	-1.3443161538771626	CTGACTAAAAGTCAA
chr8	18690276	18690277	chr8:18690277:C:T	rs73591543	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	18754023	18754024	chr8:18754024:T:G	rs79212102	T	G	T	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	18814818	18814819	chr8:18814819:T:C	rs996056993	T	C	t	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	18912319	18912320	chr8:18912320:T:C	rs73202150	T	C	t	Sox1.mouse_HMG_2	5	1	+	3.6589579090444184	-3.249796870270802	AGGAATATCCTTCAG
chr8	19000620	19000621	chr8:19000621:A:G	rs569772041	A	G	A	Sox1.mouse_HMG_2	7	1	-	5.541492906009305	6.00243735971641	GTGACTTTCATTAAT
chr8	19041659	19041660	chr8:19041660:T:C	rs764511	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	19086837	19086838	chr8:19086838:G:C	rs17127803	G	C	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	19097658	19097659	chr8:19097659:G:T	rs7014714	G	T	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	19112368	19112369	chr8:19112369:A:G	rs7814445	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	19127871	19127872	chr8:19127872:C:T	rs333041	C	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr8	19129836	19129837	chr8:19129837:T:C	rs9644619	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	19178396	19178397	chr8:19178397:A:G	rs333057	A	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	19269525	19269526	chr8:19269526:G:A	rs2943427	G	A	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr8	19453984	19453985	chr8:19453985:T:G	rs4379462	T	G	T	Sox1.mouse_HMG_2	13	1	-	4.4683323895727565	-1.8523836195565904	TTTAATCACATTCAC
chr8	19460497	19460498	chr8:19460498:G:A	rs186205299	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	19678485	19678486	chr8:19678486:C:T	rs17409154	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	19678491	19678492	chr8:19678492:T:C	rs11990497	T	C	T	Sox1.mouse_HMG_2	9	1	-	7.386676491835622	0.47792171252040083	CTGACTTGCATTTAC
chr8	19678492	19678493	chr8:19678493:G:A	rs114793636	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.386676491835622	1.7422498014536354	CTGACTTGCATTTAC
chr8	19678503	19678504	chr8:19678504:A:G	rs17481063	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	19678505	19678506	chr8:19678506:G:A	rs147366078	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	19717698	19717699	chr8:19717699:A:C	rs17091020	A	C	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	19717711	19717712	chr8:19717712:G:C	rs78871040	G	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	19788993	19788994	chr8:19788994:G:A	rs11204071	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	19789003	19789004	chr8:19789004:C:T	rs10112900	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	19789019	19789020	chr8:19789020:C:A	rs73667434	C	A	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	19810918	19810919	chr8:19810919:A:T	rs59565447	A	T	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	20052107	20052108	chr8:20052108:T:C	rs80118115	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	20086879	20086880	chr8:20086880:G:C	rs181525253	G	C	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	20274185	20274186	chr8:20274186:T:C	rs6984493	T	C	c	Sox1.mouse_HMG_2	6	1	-	3.6669213852605496	2.2267439633919115	GTGAAAAACAGTCTT
chr8	20565549	20565550	chr8:20565550:C:A	rs79404291	C	A	C	Sox1.mouse_HMG_2	12	1	+	6.362939933757843	-0.5375087167085206	TAGAATTCCATTCTG
chr8	20961681	20961682	chr8:20961682:T:C	rs117696102	T	C	T	Sox1.mouse_HMG_2	9	1	-	10.236054759718392	3.327299980403171	ATGACTACCATTCTA
chr8	21155121	21155122	chr8:21155122:C:T	rs7341675	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.602175470301158	-0.07041163336709666	GTAACTTTCATTCTT
chr8	21155124	21155125	chr8:21155125:T:C	rs7341618	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	21184384	21184385	chr8:21184385:T:C	rs1381003	T	C	T	Sox1.mouse_HMG_2	3	1	-	3.35609547580234	-3.552659303512881	CTGAATAAGATACAC
chr8	21207134	21207135	chr8:21207135:G:A	rs112436137	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	21409066	21409067	chr8:21409067:C:A	rs11995191	C	A	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr8	21589906	21589907	chr8:21589907:A:G	rs7012580	A	G	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	21599724	21599725	chr8:21599725:T:A	rs12680600	T	A	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr8	21641186	21641187	chr8:21641187:G:A	rs2170289	G	A	G	Sox1.mouse_HMG_2	2	1	+	2.5532175496455	-2.0921849833707165	GCGAACTGCATTCAC
chr8	21684448	21684449	chr8:21684449:A:G	rs78593859	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	21684455	21684456	chr8:21684456:G:T	rs115545155	G	T	G	Sox1.mouse_HMG_2	6	1	+	2.7719856179276787	3.371157605054923	ATGGCTGCCAGTCAC
chr8	21711591	21711592	chr8:21711592:G:A	rs4237073	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	21752829	21752830	chr8:21752830:G:A	rs73669545	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	21814791	21814792	chr8:21814792:C:T	rs17427894	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	22034751	22034752	chr8:22034752:C:T	rs748468	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	22092151	22092152	chr8:22092152:T:C	rs6557791	T	C	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	22158618	22158619	chr8:22158619:C:T	rs8192309	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	22461702	22461703	chr8:22461703:G:A	rs6981171	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	22559422	22559423	chr8:22559423:G:A	rs117505865	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	22632023	22632024	chr8:22632024:T:C	rs4872524	T	C	C	Sox1.mouse_HMG_2	13	1	-	3.557453782280702	-1.3886639054919458	AAGAAATGCATTCAC
chr8	22638452	22638453	chr8:22638453:T:C	rs4872526	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	22913613	22913614	chr8:22913614:G:T	rs2466210	G	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	22917713	22917714	chr8:22917714:T:C	rs2457423	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	23050411	23050412	chr8:23050412:G:A	rs13269530	G	A	A	Sox1.mouse_HMG_2	7	1	-	2.8788948908723655	2.4179504371652594	CTGACTCCCAATCAT
chr8	23080342	23080343	chr8:23080343:G:A	rs4268128	G	A	A	Sox1.mouse_HMG_2	7	1	-	2.8964817243465233	2.4355372706394163	GTGAACACCATTCCT
chr8	23256352	23256353	chr8:23256353:T:A	rs79754531	T	A	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	23287959	23287960	chr8:23287960:G:A	rs765404496	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	23287966	23287967	chr8:23287967:G:T	rs182985388	G	T	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	23411497	23411498	chr8:23411498:G:A	rs4872126	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	23441869	23441870	chr8:23441870:G:A	rs148672547	G	A	G	Sox1.mouse_HMG_2	9	1	+	7.52458448786727	14.433339267182491	TTGAATTACGTTCAA
chr8	23502317	23502318	chr8:23502318:G:T	rs13250356	G	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	23542077	23542078	chr8:23542078:T:A	rs113448535	T	A	T	Sox1.mouse_HMG_2	6	1	+	12.111326193121773	12.95233162786317	CTGAATTACAGTCAG
chr8	23542097	23542098	chr8:23542098:G:C	rs112385076	G	C	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	23570781	23570782	chr8:23570782:C:G	rs557722870	C	G	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr8	23889725	23889726	chr8:23889726:G:A	rs78328529	G	A	G	Sox1.mouse_HMG_2	12	1	-	4.024335385260331	-0.6482517184079248	CTGACTCACATTCGG
chr8	24065395	24065396	chr8:24065396:T:G	rs73671676	T	G	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr8	24348912	24348913	chr8:24348913:G:A	rs6994337	G	A	A	Sox1.mouse_HMG_2	8	1	-	2.8347515647411847	-2.8096751256408017	ATGAAAAACATACAC
chr8	24634163	24634164	chr8:24634164:G:A	rs2720732	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.448848574048839	-0.19557811633314812	ATGTATTGCAGTCAC
chr8	24706899	24706900	chr8:24706900:G:A	rs17052420	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	24732369	24732370	chr8:24732370:A:T	rs7844715	A	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	24999090	24999091	chr8:24999091:C:T	rs148149383	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	25050902	25050903	chr8:25050903:T:C	rs756221	T	C	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	25050917	25050918	chr8:25050918:T:C	rs62501475	T	C	T	Sox1.mouse_HMG_2	5	1	+	10.968505336147503	4.059750556832283	CTGAATTGCATTCTG
chr8	25099178	25099179	chr8:25099179:A:C	rs17053114	A	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	25523712	25523713	chr8:25523713:A:G	rs4872324	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	25976419	25976420	chr8:25976420:G:A	rs145575816	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	25976435	25976436	chr8:25976436:A:G	rs9314317	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	25977177	25977178	chr8:25977178:G:C	rs28418786	G	C	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	26048780	26048781	chr8:26048781:C:A	rs72609945	C	A	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	26287215	26287216	chr8:26287216:T:A	rs34756340	T	A	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	26422348	26422349	chr8:26422349:C:T	rs17055205	C	T	C	Sox1.mouse_HMG_2	2	1	+	8.044865624540739	6.540788227764464	TTCAATGCCATTCAA
chr8	26578092	26578093	chr8:26578093:C:A	chr8:26578093:C:A	C	A	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	26612785	26612786	chr8:26612786:A:G	rs936469316	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	26781392	26781393	chr8:26781393:T:G	rs11135955	T	G	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	26892714	26892715	chr8:26892715:C:T	rs7006523	C	T	t	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	27007450	27007451	chr8:27007451:C:T	rs9314332	C	T	t	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	27016636	27016637	chr8:27016637:A:T	rs2322409	A	T	a	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	27545259	27545260	chr8:27545260:G:A	rs7341557	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	27565680	27565681	chr8:27565681:G:A	rs775582473	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	27770973	27770974	chr8:27770974:A:G	rs78974196	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	27853859	27853860	chr8:27853860:A:G	rs4732774	A	G	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	27957391	27957392	chr8:27957392:C:T	rs180712457	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	28021478	28021479	chr8:28021479:T:C	rs2100365	T	C	T	Sox1.mouse_HMG_2	0	1	-	4.615553754479304	3.611317521844102	ATGAAAAAAATTCAG
chr8	28336970	28336971	chr8:28336971:A:G	rs2645715	A	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	28348123	28348124	chr8:28348124:C:T	chr8:28348124:C:T	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	28445195	28445196	chr8:28445196:G:C	rs1060412	G	C	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	28479526	28479527	chr8:28479527:A:G	rs6993584	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr8	28498189	28498190	chr8:28498190:G:A	rs11775139	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	28504941	28504942	chr8:28504942:C:T	rs7842884	C	T	T	Sox1.mouse_HMG_2	14	1	+	4.357454819726947	5.232067162449684	TTGAATTTCAGACAC
chr8	28788017	28788018	chr8:28788018:C:T	rs192484736	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	28848462	28848463	chr8:28848463:T:A	rs9644148	T	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	29319757	29319758	chr8:29319758:A:C	rs590939	A	C	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	29339703	29339704	chr8:29339704:G:T	rs6995828	G	T	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	29358730	29358731	chr8:29358731:A:G	rs621533	A	G	G	Sox1.mouse_HMG_2	14	1	-	3.3052268927071	2.430614549984364	GTTAATAACATTCCT
chr8	29402846	29402847	chr8:29402847:T:A	rs66476671	T	A	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	29464198	29464199	chr8:29464199:T:C	rs58798731	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	29685167	29685168	chr8:29685168:C:T	rs78813261	C	T	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	29782146	29782147	chr8:29782147:T:C	rs7816009	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	29807400	29807401	chr8:29807401:C:T	rs13257297	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	29829404	29829405	chr8:29829405:G:A	rs13255271	G	A	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	29886033	29886034	chr8:29886034:A:C	rs534045766	A	C	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	30044957	30044958	chr8:30044958:A:T	rs12546330	A	T	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	30279310	30279311	chr8:30279311:G:A	rs10113031	G	A	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	30453804	30453805	chr8:30453805:A:T	rs12156180	A	T	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	30538899	30538900	chr8:30538900:C:T	rs2915592	C	T	C	Sox1.mouse_HMG_2	14	1	+	4.21729672861169	5.091909071334427	GGAAATGCCATTCAC
chr8	30804552	30804553	chr8:30804553:G:A	rs78850094	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	30804556	30804557	chr8:30804557:T:C	rs59755735	T	C	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr8	31573606	31573607	chr8:31573607:G:T	rs28868886	G	T	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	31573614	31573615	chr8:31573615:C:T	rs2158176	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.911937587342493	5.612992406883569	TTGAATAGCAGCCAA
chr8	31663025	31663026	chr8:31663026:C:T	rs4559204	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.842520754195082	5.543575573736158	GTGAATAGCAGGCAA
chr8	31663030	31663031	chr8:31663031:C:T	rs4288331	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.842520754195082	0.1971182211788648	GTGAATAGCAGGCAA
chr8	32079035	32079036	chr8:32079036:T:G	rs16878764	T	G	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	32324614	32324615	chr8:32324615:G:A	rs7010701	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	32348857	32348858	chr8:32348858:G:A	rs9297189	G	A	A	Sox1.mouse_HMG_2	8	1	-	5.112635567303037	-0.5317911230789494	ATGAATCACCTTCAG
chr8	32348881	32348882	chr8:32348882:A:G	rs10503911	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	32582445	32582446	chr8:32582446:C:T	rs2439296	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	32583577	32583578	chr8:32583578:A:G	rs66877262	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	32589363	32589364	chr8:32589364:G:A	rs2439292	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr8	32715464	32715465	chr8:32715465:C:A	rs2976525	C	A	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr8	32721590	32721591	chr8:32721591:A:G	rs17669617	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	32812745	32812746	chr8:32812746:C:A	rs4556053	C	A	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	32854216	32854217	chr8:32854217:C:A	rs72637846	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	33202309	33202310	chr8:33202310:T:G	rs7815128	T	G	G	Sox1.mouse_HMG_2	10	1	+	4.309463125342303	1.5568656096172062	ATTAATAACATTCCT
chr8	33214141	33214142	chr8:33214142:C:T	rs137901730	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr8	33249050	33249051	chr8:33249051:G:A	rs6468149	G	A	A	Sox1.mouse_HMG_2	9	1	+	4.879970656724461	11.788725436039678	CTGAATACCGTTTAT
chr8	33806274	33806275	chr8:33806275:T:C	rs4733459	T	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	33935758	33935759	chr8:33935759:C:T	rs115640284	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	33935770	33935771	chr8:33935771:G:C	rs73673626	G	C	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	34155933	34155934	chr8:34155934:A:T	rs13262697	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr8	34770186	34770187	chr8:34770187:T:G	rs1949719	T	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	35003939	35003940	chr8:35003940:G:A	rs147506694	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	35120120	35120121	chr8:35120121:C:A	rs2218870	C	A	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr8	35151749	35151750	chr8:35151750:T:C	rs7009205	T	C	T	Sox1.mouse_HMG_2	3	1	-	3.771003146633007	-3.1377516326822135	TTGACTACCAATCTT
chr8	35542463	35542464	chr8:35542464:A:C	rs12550037	A	C	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	35898145	35898146	chr8:35898146:G:A	rs16884532	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr8	36271787	36271788	chr8:36271788:G:A	rs743287	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	36861100	36861101	chr8:36861101:C:A	rs13252968	C	A	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	36880687	36880688	chr8:36880688:C:T	rs7010167	C	T	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	37074034	37074035	chr8:37074035:C:G	rs2970696	C	G	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	37232857	37232858	chr8:37232858:G:A	rs10504002	G	A	A	Sox1.mouse_HMG_2	13	1	+	8.336829303444414	13.282946991217061	GTGACTATCATTCGT
chr8	37301827	37301828	chr8:37301828:T:C	rs364583	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	37492712	37492713	chr8:37492713:C:T	rs12549441	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	37746924	37746925	chr8:37746925:A:G	rs138288797	A	G	A	Sox1.mouse_HMG_2	6	1	+	5.630856394749776	4.190678972881137	CTAAATATAATTCAC
chr8	37796350	37796351	chr8:37796351:C:T	rs78744677	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	38184651	38184652	chr8:38184652:C:T	chr8:38184652:C:T	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	38205716	38205717	chr8:38205717:C:A	rs7836805	C	A	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr8	38205727	38205728	chr8:38205728:A:C	rs11779210	A	C	A	Sox1.mouse_HMG_2	10	1	-	3.5833681070887042	0.8307705913636076	AAGAATTCCATGCAG
chr8	38528395	38528396	chr8:38528396:C:T	rs1378332	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	38551484	38551485	chr8:38551485:C:T	rs77218478	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	38648548	38648549	chr8:38648549:G:A	rs7819654	G	A	G	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	38969273	38969274	chr8:38969274:T:G	rs9987126	T	G	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	40087687	40087688	chr8:40087688:T:C	rs60215074	T	C	T	Sox1.mouse_HMG_2	0	1	-	3.371848603963517	2.367612371328315	AGGCATGTCATTCAT
chr8	40322712	40322713	chr8:40322713:G:A	rs1882920	G	A	g	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	40373493	40373494	chr8:40373494:C:T	rs76022435	C	T	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr8	40455045	40455046	chr8:40455046:G:A	rs9298596	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	40482081	40482082	chr8:40482082:C:G	rs61234540	C	G	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr8	40519388	40519389	chr8:40519389:A:G	rs2565097	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr8	40763595	40763596	chr8:40763596:G:C	rs34505426	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	40933418	40933419	chr8:40933419:C:A	chr8:40933419:C:A	C	A	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	40933418	40933419	chr8:40933419:C:T	rs72632918	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	40933448	40933449	chr8:40933449:A:G	rs114190969	A	G	A	Sox1.mouse_HMG_2	14	1	+	4.760581550659876	4.925222798554824	AAGAATATCAGTCTA
chr8	41159120	41159121	chr8:41159121:C:T	rs10958663	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	41197218	41197219	chr8:41197219:C:T	rs4527854	C	T	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	41235630	41235631	chr8:41235631:C:A	rs9785096	C	A	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	41342640	41342641	chr8:41342641:G:A	rs149748250	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr8	41830528	41830529	chr8:41830529:T:C	rs1362890	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	41906776	41906777	chr8:41906777:C:A	rs112097880	C	A	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	41906779	41906780	chr8:41906780:T:G	rs72640376	T	G	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	42050801	42050802	chr8:42050802:G:A	rs186091045	G	A	G	Sox1.mouse_HMG_2	4	1	+	5.638073416617817	12.459486185777893	ATGAGTGACAGTCAC
chr8	42094388	42094389	chr8:42094389:T:C	rs145179278	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	42269971	42269972	chr8:42269972:C:A	rs181439700	C	A	C	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	42516731	42516732	chr8:42516732:C:T	rs116898680	C	T	C	Sox1.mouse_HMG_2	7	1	+	2.9293915676217273	2.4684471139146202	ATGACTTCCTTTCTC
chr8	42555644	42555645	chr8:42555645:T:G	rs7815987	T	G	T	Sox1.mouse_HMG_2	9	1	-	3.50060643589076	-3.4081483434244615	CTGAATGCCACTTAT
chr8	42658510	42658511	chr8:42658511:T:G	rs10101676	T	G	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr8	42658531	42658532	chr8:42658532:C:T	rs34842664	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.10028991573429	-1.544136774647697	GTGCATTACATTTAT
chr8	42660657	42660658	chr8:42660658:A:G	rs1868859	A	G	a	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	42891623	42891624	chr8:42891624:T:C	rs77693785	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	43199378	43199379	chr8:43199379:C:G	rs76750342	C	G	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr8	43199409	43199410	chr8:43199410:T:C	rs1126058	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	43254426	43254427	chr8:43254427:A:G	rs1021045	A	G	.	Sox1.mouse_HMG_2	0	1	+	7.369288620191479	6.365052387556278	ACGAATTACATTTAT
chr8	43688494	43688495	chr8:43688495:T:C	rs191419302	T	C	.	Sox1.mouse_HMG_2	11	1	+	6.315768333598236	-0.5929864457169844	ATGAAAACCAGTCAG
chr8	46018564	46018565	chr8:46018565:G:A	rs11778237	G	A	.	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	46018582	46018583	chr8:46018583:C:T	rs11996894	C	T	.	Sox1.mouse_HMG_2	14	1	-	7.314927311025515	7.150286063130567	CTGAATTGCACTCAG
chr8	46188873	46188874	chr8:46188874:G:A	rs144472070	G	A	.	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	46940569	46940570	chr8:46940570:G:T	rs13274636	G	T	T	Sox1.mouse_HMG_2	12	1	-	2.8307576057531	-4.069691044713264	CTGACTTGCATCCTT
chr8	47472817	47472818	chr8:47472818:A:G	rs11989844	A	G	a	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	48118934	48118935	chr8:48118935:G:T	rs185129154	G	T	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	48576968	48576969	chr8:48576969:G:A	rs961053364	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	48643796	48643797	chr8:48643797:T:C	rs144891863	T	C	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	48668942	48668943	chr8:48668943:G:A	rs9694357	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	48668960	48668961	chr8:48668961:G:A	rs186572513	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	49081136	49081137	chr8:49081137:A:T	rs10435612	A	T	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr8	49196888	49196889	chr8:49196889:A:G	rs56368009	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	49226892	49226893	chr8:49226893:T:G	rs4427188	T	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	49955809	49955810	chr8:49955810:C:T	rs2385697	C	T	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	50115949	50115950	chr8:50115950:G:A	rs117818603	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr8	50172444	50172445	chr8:50172445:G:A	rs4873415	G	A	G	Sox1.mouse_HMG_2	0	1	+	5.2292188120184795	6.233455044653682	GTAAATAGCAGTCTT
chr8	50809027	50809028	chr8:50809028:G:C	rs72645878	G	C	G	Sox1.mouse_HMG_2	6	1	+	3.8975110504230894	0.9852734696033639	CTGACTGCCATTTTC
chr8	50827624	50827625	chr8:50827625:T:C	rs72647109	T	C	T	Sox1.mouse_HMG_2	7	1	-	3.020735448885496	2.31968062934442	GTGAATAAGTTTCAC
chr8	51046998	51046999	chr8:51046999:T:C	rs6473574	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	51240369	51240370	chr8:51240370:A:T	rs2392833	A	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	51240422	51240423	chr8:51240423:C:T	rs2893637	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	51373951	51373952	chr8:51373952:G:A	rs961353	G	A	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr8	51399645	51399646	chr8:51399646:G:A	rs73579673	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	51667915	51667916	chr8:51667916:T:A	chr8:51667916:T:A	T	A	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	51935595	51935596	chr8:51935596:A:C	rs16916974	A	C	A	Sox1.mouse_HMG_2	10	1	-	4.556625546214345	1.8040280304892482	CTCAAAAACATTCAT
chr8	52022018	52022019	chr8:52022019:G:A	rs268933	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	52230384	52230385	chr8:52230385:T:C	rs17221900	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	52300080	52300081	chr8:52300081:C:T	rs17315497	C	T	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	52790042	52790043	chr8:52790043:C:T	rs12679581	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.010712183623096	0.3653096506068795	TTGAACAACATTTAT
chr8	52819552	52819553	chr8:52819553:T:C	rs17339378	T	C	T	Sox1.mouse_HMG_2	3	1	-	3.312679186795851	-3.596075592519368	ATGAAAACCATGCAT
chr8	52855550	52855551	chr8:52855551:G:A	rs7844657	G	A	G	Sox1.mouse_HMG_2	12	1	+	8.850599981398814	8.850599981398814	TTGAATTACATTGAT
chr8	53064408	53064409	chr8:53064409:C:T	rs79432903	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	53104671	53104672	chr8:53104672:C:G	rs4532612	C	G	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	53142757	53142758	chr8:53142758:C:T	rs2588052	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr8	53229596	53229597	chr8:53229597:T:C	rs702764	T	C	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	53310365	53310366	chr8:53310366:A:G	rs73679716	A	G	a	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	54571022	54571023	chr8:54571023:C:A	rs10216467	C	A	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	54628889	54628890	chr8:54628890:G:A	rs446227	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	54917252	54917253	chr8:54917253:G:A	rs4504610	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	55155831	55155832	chr8:55155832:A:G	rs12156412	A	G	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr8	55788888	55788889	chr8:55788889:A:T	rs1868746	A	T	T	Sox1.mouse_HMG_2	9	1	+	6.813357346161562	-0.09539743315365765	CTGACTTACAGTCTC
chr8	55841042	55841043	chr8:55841043:T:C	rs183875319	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	55991446	55991447	chr8:55991447:G:A	rs6990948	G	A	A	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr8	55991466	55991467	chr8:55991467:T:A	rs16920192	T	A	T	Sox1.mouse_HMG_2	13	1	-	5.575713020111855	2.381349466953562	TAGACTTCCAGTCAT
chr8	56079416	56079417	chr8:56079417:G:C	rs2976043	G	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	56532689	56532690	chr8:56532690:T:A	rs2610036	T	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	56641008	56641009	chr8:56641009:C:A	rs7822985	C	A	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	57052717	57052718	chr8:57052718:C:G	rs1442122	C	G	.	Sox1.mouse_HMG_2	8	1	+	8.407795772453834	2.6892611099181245	CTGAATACCATTAAG
chr8	57246792	57246793	chr8:57246793:G:A	rs17216236	G	A	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr8	57273020	57273021	chr8:57273021:G:A	rs67630725	G	A	.	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr8	57495574	57495575	chr8:57495575:G:A	rs6998492	G	A	G	Sox1.mouse_HMG_2	12	1	-	5.602603610307859	0.930016506639603	TTGTCTTTCATTCAT
chr8	57844732	57844733	chr8:57844733:A:G	rs16922632	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	58048840	58048841	chr8:58048841:A:G	rs13263290	A	G	A	Sox1.mouse_HMG_2	10	1	-	2.77089729755626	-4.077044280724021	CTGAAAATCATTCCT
chr8	58243851	58243852	chr8:58243852:A:C	rs12680043	A	C	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	58275240	58275241	chr8:58275241:T:G	rs7821169	T	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	58283575	58283576	chr8:58283576:A:G	rs4475466	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	58310035	58310036	chr8:58310036:G:A	rs10109576	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	58310063	58310064	chr8:58310064:C:A	rs10109389	C	A	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	58339116	58339117	chr8:58339117:A:G	rs2925662	A	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	58380265	58380266	chr8:58380266:T:C	rs2326074	T	C	c	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr8	58380269	58380270	chr8:58380270:G:A	rs2875834	G	A	a	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	58391904	58391905	chr8:58391905:A:G	rs13264476	A	G	a	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	58618971	58618972	chr8:58618972:C:G	rs7011066	C	G	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	58813899	58813900	chr8:58813900:C:T	rs7838449	C	T	c	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	58830618	58830619	chr8:58830619:T:C	rs10099884	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	58850076	58850077	chr8:58850077:T:C	rs117644709	T	C	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	58856397	58856398	chr8:58856398:C:T	rs60665035	C	T	T	Sox1.mouse_HMG_2	1	1	-	5.256609391015751	5.561080570094327	TGGAATACCATTTAA
chr8	58897748	58897749	chr8:58897749:T:G	rs2044643	T	G	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	59017704	59017705	chr8:59017705:G:T	rs10504277	G	T	G	Sox1.mouse_HMG_2	8	1	-	6.237682995100651	1.388186179588553	GTGAATTGCAGTTAA
chr8	59234901	59234902	chr8:59234902:G:A	rs73248441	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	59234918	59234919	chr8:59234919:A:C	rs77178915	A	C	A	Sox1.mouse_HMG_2	9	1	+	5.737354232155789	-1.1714005471594322	TAGAATTTCATTCTA
chr8	59297978	59297979	chr8:59297979:G:C	rs7018116	G	C	G	Sox1.mouse_HMG_2	2	1	+	5.533186777160448	0.14056984231400904	GTGACTTTCTTTCAT
chr8	59312046	59312047	chr8:59312047:G:A	rs77005082	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr8	59694680	59694681	chr8:59694681:A:T	rs149387622	A	T	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	59839822	59839823	chr8:59839823:T:C	rs17269617	T	C	T	Sox1.mouse_HMG_2	4	1	-	9.631861768998979	2.8104489998389077	TTAAATGACATTCAC
chr8	59851102	59851103	chr8:59851103:T:G	rs9643515	T	G	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	59899019	59899020	chr8:59899020:C:T	rs549822070	C	T	c	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	59899020	59899021	chr8:59899021:G:A	rs55827533	G	A	a	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	60396892	60396893	chr8:60396893:C:A	rs10957135	C	A	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	60396927	60396928	chr8:60396928:G:T	rs116853648	G	T	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	60518075	60518076	chr8:60518076:G:T	rs55761966	G	T	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	60678222	60678223	chr8:60678223:A:C	chr8:60678223:A:C	A	C	A	Sox1.mouse_HMG_2	1	1	-	5.177770512576399	0.22930702600459033	GTGACTGGCAGTCTC
chr8	60678234	60678235	chr8:60678235:C:T	rs78712749	C	T	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	60762901	60762902	chr8:60762902:G:A	rs7823484	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr8	60821735	60821736	chr8:60821736:A:G	rs4509369	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	61018157	61018158	chr8:61018158:A:G	rs3963188	A	G	A	Sox1.mouse_HMG_2	14	1	-	6.064969070687656	5.19035672796492	TAAAATTCCATTCAT
chr8	61038218	61038219	chr8:61038219:A:G	rs7841714	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	61122539	61122540	chr8:61122540:G:A	rs73685733	G	A	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr8	61260186	61260187	chr8:61260187:C:T	rs3857973	C	T	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	61260203	61260204	chr8:61260204:C:T	rs111352600	C	T	C	Sox1.mouse_HMG_2	7	1	+	6.693369027966903	6.232424574259798	TTGCATGCCATTCAG
chr8	61262994	61262995	chr8:61262995:A:G	rs2931286	A	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr8	61265665	61265666	chr8:61265666:A:G	rs28460733	A	G	A	Sox1.mouse_HMG_2	11	1	-	4.637375359110031	-2.27137942020519	AGGAATTACAGTCTG
chr8	61288787	61288788	chr8:61288788:C:T	rs7825528	C	T	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	61562958	61562959	chr8:61562959:G:C	rs3824269	G	C	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	61725875	61725876	chr8:61725876:G:T	rs10110165	G	T	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	61761210	61761211	chr8:61761211:C:T	rs111370688	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	62003205	62003206	chr8:62003206:T:G	rs7016420	T	G	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	62303066	62303067	chr8:62303067:T:C	rs747970347	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	62375410	62375411	chr8:62375411:C:A	rs4257998	C	A	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	62375431	62375432	chr8:62375432:C:G	rs4442137	C	G	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	62473637	62473638	chr8:62473638:G:T	rs2053938	G	T	G	Sox1.mouse_HMG_2	7	1	-	3.6611206217180365	4.057805342386106	CTGAATGCCAATCTA
chr8	62503629	62503630	chr8:62503630:T:C	rs1839870	T	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	62701607	62701608	chr8:62701608:A:G	rs11993139	A	G	G	Sox1.mouse_HMG_2	10	1	-	4.470171549909296	-2.377770028370984	TTGCATAGCATTCTA
chr8	63147042	63147043	chr8:63147043:T:C	rs144769662	T	C	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr8	63602606	63602607	chr8:63602607:G:A	rs72649210	G	A	G	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr8	64782827	64782828	chr8:64782828:C:T	rs12674544	C	T	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr8	64916910	64916911	chr8:64916911:G:C	rs6994298	G	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	65010023	65010024	chr8:65010024:A:T	rs16931641	A	T	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	65092758	65092759	chr8:65092759:G:A	rs2956306	G	A	g	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	65143831	65143832	chr8:65143832:A:G	rs4737702	A	G	A	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	65143865	65143866	chr8:65143866:G:C	rs117273657	G	C	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	65183259	65183260	chr8:65183260:G:T	rs7000812	G	T	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	65191748	65191749	chr8:65191749:C:T	rs35523635	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	65556744	65556745	chr8:65556745:G:C	rs150191063	G	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr8	65734243	65734244	chr8:65734244:G:A	chr8:65734244:G:A	G	A	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	65888786	65888787	chr8:65888787:C:A	rs116591049	C	A	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	65919963	65919964	chr8:65919964:G:C	rs73248906	G	C	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	65928021	65928022	chr8:65928022:A:G	rs7006472	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr8	65942024	65942025	chr8:65942025:T:C	rs6997496	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	65965375	65965376	chr8:65965376:C:A	rs76351686	C	A	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	66064092	66064093	chr8:66064093:C:T	rs10091688	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	66407602	66407603	chr8:66407603:T:A	rs7003558	T	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	66782047	66782048	chr8:66782048:C:G	rs76378745	C	G	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	67277767	67277768	chr8:67277768:A:T	rs114342295	A	T	A	Sox1.mouse_HMG_2	5	1	-	3.6075527099115745	-3.301202069403644	GTCATTAGCATTCAT
chr8	67331370	67331371	chr8:67331371:G:A	rs74768077	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	67530511	67530512	chr8:67530512:C:T	rs2380414	C	T	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	68019444	68019445	chr8:68019445:G:T	rs6984225	G	T	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	68059945	68059946	chr8:68059946:G:C	rs13282930	G	C	C	Sox1.mouse_HMG_2	10	1	+	3.5768937420593008	-0.5184503204958827	CTGACTTCCTGTCAT
chr8	68096677	68096678	chr8:68096678:A:G	rs1946666	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	68612177	68612178	chr8:68612178:C:T	rs16934777	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	68729266	68729267	chr8:68729267:T:A	rs55821789	T	A	T	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr8	68736420	68736421	chr8:68736421:C:T	rs74772743	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	68776860	68776861	chr8:68776861:G:T	rs7834286	G	T	G	Sox1.mouse_HMG_2	8	1	-	3.4397735032746186	-1.4097233122374808	ATGAATATCATCCCT
chr8	68970992	68970993	chr8:68970993:C:A	rs17613308	C	A	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	68971003	68971004	chr8:68971004:G:C	rs74501158	G	C	G	Sox1.mouse_HMG_2	12	1	-	14.475936192509083	7.575487542042721	CTGACTAACATTCAT
chr8	69041377	69041378	chr8:69041378:T:A	rs11774986	T	A	A	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr8	69144205	69144206	chr8:69144206:C:A	rs11786948	C	A	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	69150767	69150768	chr8:69150768:A:C	rs4737269	A	C	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	69191928	69191929	chr8:69191929:T:G	rs9298146	T	G	T	Sox1.mouse_HMG_2	14	1	-	5.983528854741744	6.426625876701694	TTGACGAACATTCAA
chr8	69217873	69217874	chr8:69217874:T:G	rs1096595	T	G	g	Sox1.mouse_HMG_2	6	1	+	4.717087259595645	4.117915272468401	ATCAATTTGATTCAT
chr8	69372540	69372541	chr8:69372541:A:G	rs1159090	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	69459125	69459126	chr8:69459126:A:G	rs6472462	A	G	A	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	69687052	69687053	chr8:69687053:C:T	rs11775792	C	T	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	69705926	69705927	chr8:69705927:T:C	rs918004551	T	C	T	Sox1.mouse_HMG_2	5	1	+	7.702202822680168	0.7934480433649468	ATCAATTCCATTCTT
chr8	70099721	70099722	chr8:70099722:T:C	rs3892266	T	C	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	70240618	70240619	chr8:70240619:A:G	rs58840722	A	G	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr8	70328242	70328243	chr8:70328243:C:T	rs10504472	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	70442313	70442314	chr8:70442314:T:C	rs7818677	T	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	70776172	70776173	chr8:70776173:C:A	rs7000647	C	A	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	71106760	71106761	chr8:71106761:A:G	rs3919903	A	G	A	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	71765113	71765114	chr8:71765114:C:T	rs4300047	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	71798069	71798070	chr8:71798070:A:T	rs28523719	A	T	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr8	72926866	72926867	chr8:72926867:A:G	rs10096641	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	73071364	73071365	chr8:73071365:G:A	rs9721375	G	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	73071373	73071374	chr8:73071374:A:G	rs78175211	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	73356505	73356506	chr8:73356506:G:C	rs917074900	G	C	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	73383234	73383235	chr8:73383235:G:A	rs143959783	G	A	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	73483763	73483764	chr8:73483764:A:C	rs62508177	A	C	A	Sox1.mouse_HMG_2	12	1	+	3.2872030568589867	10.187651707325351	AGGAATTCCATTAAG
chr8	73489718	73489719	chr8:73489719:G:A	rs13272002	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	73689578	73689579	chr8:73689579:T:C	rs10093439	T	C	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	73756023	73756024	chr8:73756024:A:G	rs7008333	A	G	G	Sox1.mouse_HMG_2	6	1	+	6.081533809125615	4.641356387256977	GTCAATAGCATTCTG
chr8	73900437	73900438	chr8:73900438:T:C	rs117047060	T	C	t	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr8	73917481	73917482	chr8:73917482:G:A	rs6472810	G	A	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	74061283	74061284	chr8:74061284:C:T	rs73331919	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	74076074	74076075	chr8:74076075:G:A	rs60785873	G	A	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	74601595	74601596	chr8:74601596:G:T	rs6472867	G	T	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	74648378	74648379	chr8:74648379:T:G	rs62521641	T	G	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	75118367	75118368	chr8:75118368:T:A	rs6981727	T	A	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	75228896	75228897	chr8:75228897:A:G	rs1351224	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	75402205	75402206	chr8:75402206:A:G	rs865939343	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr8	75458671	75458672	chr8:75458672:C:T	rs36120753	C	T	C	Sox1.mouse_HMG_2	0	1	-	4.915435386798644	5.919671619433846	GTAAATTCAATTCAC
chr8	76334105	76334106	chr8:76334106:T:G	rs10156271	T	G	G	Sox1.mouse_HMG_2	1	1	+	6.835362528605154	1.8868990420333462	GTCAATTGCAGTCAT
chr8	77119008	77119009	chr8:77119009:A:G	rs117136173	A	G	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	77214089	77214090	chr8:77214090:G:A	rs10113289	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	77281109	77281110	chr8:77281110:A:G	rs80193527	A	G	A	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	77300161	77300162	chr8:77300162:A:G	rs116658464	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	77665302	77665303	chr8:77665303:G:A	rs1397104	G	A	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	77767159	77767160	chr8:77767160:A:G	rs7827238	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	77779599	77779600	chr8:77779600:A:G	rs28572159	A	G	A	Sox1.mouse_HMG_2	3	1	+	5.289159872682414	-1.6195949066328064	TTCAATTCCATTTAT
chr8	78230079	78230080	chr8:78230080:T:C	rs28441036	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	78339417	78339418	chr8:78339418:T:G	rs11781889	T	G	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	78571599	78571600	chr8:78571600:A:G	rs6473106	A	G	N	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr8	78646120	78646121	chr8:78646121:C:G	rs62517750	C	G	C	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr8	78680190	78680191	chr8:78680191:T:C	rs9298316	T	C	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	78806798	78806799	chr8:78806799:T:C	rs11777564	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr8	79131483	79131484	chr8:79131484:T:C	rs2102980	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.314701506033852	-1.594053273281368	CTGAACGACATTCTT
chr8	80139891	80139892	chr8:80139892:T:C	rs7844190	T	C	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	80347210	80347211	chr8:80347211:G:A	rs10957975	G	A	g	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	80364327	80364328	chr8:80364328:A:G	rs142924928	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	80488805	80488806	chr8:80488806:C:T	rs193012275	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	80757985	80757986	chr8:80757986:T:C	rs73692128	T	C	T	Sox1.mouse_HMG_2	4	1	-	7.605834181293641	0.7844214121335701	TTCAATTACAGTCAT
chr8	80812805	80812806	chr8:80812806:T:G	rs75692439	T	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	80812806	80812807	chr8:80812807:T:C	rs74776413	T	C	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr8	81275073	81275074	chr8:81275074:C:T	rs78234417	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	81333124	81333125	chr8:81333125:G:A	rs1909935	G	A	A	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	81597712	81597713	chr8:81597713:G:A	rs10089252	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	81663547	81663548	chr8:81663548:C:T	rs2400589	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	81693018	81693019	chr8:81693019:C:T	rs2991005	C	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	81855665	81855666	chr8:81855666:A:C	rs28437406	A	C	C	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	81982918	81982919	chr8:81982919:T:C	rs77521175	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	82228575	82228576	chr8:82228576:T:C	rs190305785	T	C	T	Sox1.mouse_HMG_2	14	1	-	6.666955313492094	6.831596561387042	TTGCATTTCATTCAA
chr8	82228586	82228587	chr8:82228587:G:A	rs4314656	G	A	A	Sox1.mouse_HMG_2	3	1	-	6.666955313492094	6.666955313492094	TTGCATTTCATTCAA
chr8	82675917	82675918	chr8:82675918:C:G	rs184755659	C	G	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	83365019	83365020	chr8:83365020:C:T	rs28396244	C	T	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	84100037	84100038	chr8:84100038:A:G	rs1866085	A	G	G	Sox1.mouse_HMG_2	11	1	-	9.63121985981779	2.72246508050257	ATGACTTACATTTAT
chr8	84139154	84139155	chr8:84139155:A:G	rs10504800	A	G	.	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	84183411	84183412	chr8:84183412:G:T	rs958111052	G	T	.	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	84183420	84183421	chr8:84183421:G:A	rs10096837	G	A	.	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	84210786	84210787	chr8:84210787:C:T	rs11780481	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	84749838	84749839	chr8:84749839:A:G	rs9298427	A	G	G	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	85007463	85007464	chr8:85007464:C:G	rs2896440	C	G	g	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr8	85007494	85007495	chr8:85007495:T:C	rs1534038	T	C	c	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	85039061	85039062	chr8:85039062:C:T	rs36164497	C	T	c	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	85076550	85076551	chr8:85076551:C:A	rs36158812	C	A	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr8	85236181	85236182	chr8:85236182:T:C	rs7827175	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.320140784527928	-2.5012719846321443	GTCAATGTCATTCTA
chr8	86109821	86109822	chr8:86109822:G:A	rs112683549	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	86238079	86238080	chr8:86238080:C:T	rs4463401	C	T	T	Sox1.mouse_HMG_2	12	1	+	5.055821931282871	0.3832348276146159	GTAATTAACATTCAT
chr8	86873021	86873022	chr8:86873022:A:G	rs2446123	A	G	G	Sox1.mouse_HMG_2	12	1	+	4.017888341363389	4.017888341363389	GTGAATTTCAGTAAG
chr8	86941170	86941171	chr8:86941171:T:C	rs7463269	T	C	C	Sox1.mouse_HMG_2	1	1	+	3.763208134041287	-0.8807841734519449	ATGAATACTAATCAC
chr8	87428244	87428245	chr8:87428245:A:G	rs16868510	A	G	A	Sox1.mouse_HMG_2	14	1	-	2.719763403677637	1.8451510609549013	CTCAAAGCCATTCAT
chr8	87428264	87428265	chr8:87428265:A:C	rs9297322	A	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	87469599	87469600	chr8:87469600:A:G	rs2905414	A	G	A	Sox1.mouse_HMG_2	0	1	-	10.249427149996768	10.515370343766199	TAGAATTTCATTCAT
chr8	87976070	87976071	chr8:87976071:C:G	rs11781084	C	G	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	88164265	88164266	chr8:88164266:T:A	rs77215358	T	A	T	Sox1.mouse_HMG_2	4	1	-	5.9138734931610974	-0.9075392759989763	CTGAATTACTTTCTT
chr8	88276430	88276431	chr8:88276431:T:C	rs28904574	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.128884711909312	-0.8172329758633364	GAGAATTACTTTCAT
chr8	88287329	88287330	chr8:88287330:A:C	rs73692214	A	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	88525872	88525873	chr8:88525873:C:T	rs151078466	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr8	88899432	88899433	chr8:88899433:A:G	rs11998010	A	G	g	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	88899478	88899479	chr8:88899479:T:C	rs11984484	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	89388738	89388739	chr8:89388739:T:G	rs7000462	T	G	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	89636341	89636342	chr8:89636342:G:A	rs160409	G	A	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	89685606	89685607	chr8:89685607:C:A	rs4961158	C	A	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	89756917	89756918	chr8:89756918:T:C	rs192237217	T	C	t	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr8	89756936	89756937	chr8:89756937:G:C	rs911280802	G	C	G	Sox1.mouse_HMG_2	7	1	-	4.7745416487823045	4.470171549909298	TTGAATACCTTTCTA
chr8	89760603	89760604	chr8:89760604:T:C	rs182078627	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	89790444	89790445	chr8:89790445:T:A	rs201544199	T	A	T	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	89797656	89797657	chr8:89797657:G:A	rs77728062	G	A	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr8	89797690	89797691	chr8:89797691:C:T	rs112021791	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	89881987	89881988	chr8:89881988:C:T	rs983925	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	89919478	89919479	chr8:89919479:A:G	rs80268568	A	G	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	90183807	90183808	chr8:90183808:C:T	rs12675946	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.911937587342492	-0.7324891030394939	TTGAAAAGCAGTCAA
chr8	90533933	90533934	chr8:90533934:C:G	rs2285232	C	G	G	Sox1.mouse_HMG_2	12	1	+	3.9620188626000115	-2.938429787866353	ATAAATATCATACAG
chr8	90770048	90770049	chr8:90770049:G:T	rs17645841	G	T	G	Sox1.mouse_HMG_2	1	1	-	3.539164732612818	3.539164732612818	GCGAATAGCATTCCA
chr8	91180270	91180271	chr8:91180271:A:G	rs7822260	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	91205363	91205364	chr8:91205364:G:A	rs112708248	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	91964463	91964464	chr8:91964464:A:C	rs146429147	A	C	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr8	92281232	92281233	chr8:92281233:A:G	rs7014625	A	G	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr8	92281268	92281269	chr8:92281269:A:G	rs77271401	A	G	A	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	92515400	92515401	chr8:92515401:A:G	rs78466455	A	G	A	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	92782411	92782412	chr8:92782412:C:G	rs768387726	C	G	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	92812756	92812757	chr8:92812757:G:T	rs4276664	G	T	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	93054596	93054597	chr8:93054597:C:T	rs112604354	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	93092005	93092006	chr8:93092006:G:A	rs438723	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	93132808	93132809	chr8:93132809:G:A	rs13255530	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	93197099	93197100	chr8:93197100:C:T	rs278529	C	T	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	93990806	93990807	chr8:93990807:C:G	chr8:93990807:C:G	C	G	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	94061672	94061673	chr8:94061673:C:T	rs12548619	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.166156567348634	4.867211386889709	GTGAAGTGCAGTCAG
chr8	94242861	94242862	chr8:94242862:G:A	rs2607071	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	94406926	94406927	chr8:94406927:G:A	rs2246066	G	A	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	94961098	94961099	chr8:94961099:G:C	rs4735335	G	C	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	95074958	95074959	chr8:95074959:T:C	rs2599705	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	95166916	95166917	chr8:95166917:C:T	rs297562	C	T	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	95190745	95190746	chr8:95190746:A:C	rs6471522	A	C	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	95228518	95228519	chr8:95228519:G:A	rs36032317	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	95270311	95270312	chr8:95270312:G:C	rs2452476	G	C	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr8	95329737	95329738	chr8:95329738:A:G	rs116960309	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	95439894	95439895	chr8:95439895:A:G	rs3133760	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	95476960	95476961	chr8:95476961:A:G	rs2133947	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr8	95560562	95560563	chr8:95560563:G:A	rs3104992	G	A	A	Sox1.mouse_HMG_2	0	1	-	3.8307964597171695	3.564853265947737	CTGACTATGATTCTC
chr8	95562166	95562167	chr8:95562167:A:G	rs78030505	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	95681776	95681777	chr8:95681777:A:C	rs3102490	A	C	a	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	96041774	96041775	chr8:96041775:G:A	rs7003800	G	A	A	Sox1.mouse_HMG_2	10	1	+	5.878935600653001	1.7835915380978173	CTGAATAACTGTCAA
chr8	96268134	96268135	chr8:96268135:C:A	rs147588193	C	A	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	96269909	96269910	chr8:96269910:G:A	rs28713338	G	A	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	96347164	96347165	chr8:96347165:G:A	rs7819386	G	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr8	96432555	96432556	chr8:96432556:G:A	rs72680117	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	96496102	96496103	chr8:96496103:G:A	rs2575705	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	96496132	96496133	chr8:96496133:G:T	rs1348563	G	T	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	96591230	96591231	chr8:96591231:C:T	chr8:96591231:C:T	C	T	C	Sox1.mouse_HMG_2	6	1	-	8.243121865422712	9.683299287291353	TTGAATGACTTTCAT
chr8	96615347	96615348	chr8:96615348:G:A	rs56120866	G	A	g	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	96615351	96615352	chr8:96615352:T:C	rs117413950	T	C	t	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	96615357	96615358	chr8:96615358:T:A	rs111371320	T	A	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr8	96701711	96701712	chr8:96701712:T:C	rs6986455	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	97060869	97060870	chr8:97060870:C:A	rs16895193	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	97134515	97134516	chr8:97134516:C:A	rs16895249	C	A	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr8	97239409	97239410	chr8:97239410:A:G	rs6468538	A	G	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	97637585	97637586	chr8:97637586:G:A	rs72669689	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	97929788	97929789	chr8:97929789:G:A	rs1037529	G	A	G	Sox1.mouse_HMG_2	0	1	+	2.3084429541606495	3.312679186795852	GTGTATACCATCCAT
chr8	98240238	98240239	chr8:98240239:C:T	rs187799137	C	T	C	Sox1.mouse_HMG_2	7	1	-	3.964364148031055	4.665418967572132	GGGAAAAGCATTCAT
chr8	98457011	98457012	chr8:98457012:A:G	chr8:98457012:A:G	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	98487958	98487959	chr8:98487959:C:T	rs4348458	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	98558305	98558306	chr8:98558306:A:G	rs111898025	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	98558313	98558314	chr8:98558314:T:A	rs72666645	T	A	T	Sox1.mouse_HMG_2	1	1	+	3.3713788156038893	-1.2726134918893437	ATCAATAGCTTTCAG
chr8	98834711	98834712	chr8:98834712:T:G	rs2922073	T	G	T	Sox1.mouse_HMG_2	14	1	+	4.748496671568953	3.595428554781214	ACTAATTCCATTCAT
chr8	98930901	98930902	chr8:98930902:G:A	rs986826625	G	A	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	99024814	99024815	chr8:99024815:C:A	rs78791374	C	A	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	99251268	99251269	chr8:99251269:T:G	rs114822654	T	G	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	99464296	99464297	chr8:99464297:A:G	rs3103724	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	99536746	99536747	chr8:99536747:C:T	rs16897440	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	99800071	99800072	chr8:99800072:A:G	rs10092463	A	G	A	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	99942162	99942163	chr8:99942163:G:A	rs61024211	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	99942170	99942171	chr8:99942171:T:A	rs77085085	T	A	T	Sox1.mouse_HMG_2	1	1	+	6.06767876348269	1.423686455989456	GTGAATTGGATTCTT
chr8	100159009	100159010	chr8:100159010:T:C	rs2514691	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr8	100307767	100307768	chr8:100307768:C:T	rs1788167	C	T	T	Sox1.mouse_HMG_2	8	1	+	6.658661264469131	1.0142345740871446	TTCACTTACATTCAA
chr8	100457659	100457660	chr8:100457660:C:A	rs35796203	C	A	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr8	100457679	100457680	chr8:100457680:T:A	rs7830416	T	A	A	Sox1.mouse_HMG_2	6	1	-	1.7691906383547573	0.9281852036133623	CTGTATACCATCCAC
chr8	100494194	100494195	chr8:100494195:G:T	rs140103211	G	T	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	100602814	100602815	chr8:100602815:G:A	rs72679776	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.334364226913663	2.8734197732065576	TTGCATGCCATTCTA
chr8	100693647	100693648	chr8:100693648:T:A	rs1123218	T	A	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	100723157	100723158	chr8:100723158:C:T	rs118153451	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	100915466	100915467	chr8:100915467:C:T	rs13254653	C	T	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr8	100938765	100938766	chr8:100938766:A:C	rs940292789	A	C	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	100944648	100944649	chr8:100944649:C:T	rs17365948	C	T	C	Sox1.mouse_HMG_2	0	1	+	6.026441085378514	5.760497891609082	CGAAATTCCATTCAT
chr8	100944682	100944683	chr8:100944683:C:T	rs17365982	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	101003190	101003191	chr8:101003191:A:G	rs4734505	A	G	a	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	101004423	101004424	chr8:101004424:C:T	rs10505005	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	101072148	101072149	chr8:101072149:A:G	rs2100096	A	G	G	Sox1.mouse_HMG_2	9	1	+	3.101520796644764	-3.807233982670456	CTGGCTACCATTCTC
chr8	101072155	101072156	chr8:101072156:T:G	rs13278669	T	G	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	101239928	101239929	chr8:101239929:A:G	rs16899127	A	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	101240403	101240404	chr8:101240404:T:C	rs1947124	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	101646377	101646378	chr8:101646378:T:C	rs74747203	T	C	T	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr8	101774102	101774103	chr8:101774103:G:C	rs77513317	G	C	G	Sox1.mouse_HMG_2	12	1	-	10.84229099335613	3.941842342889765	TTGAATTCCATTCTA
chr8	101884928	101884929	chr8:101884929:T:C	rs149860778	T	C	T	Sox1.mouse_HMG_2	6	1	-	4.90856545289948	3.4683880310308406	CAGAATACCTTTCAT
chr8	102315765	102315766	chr8:102315766:T:G	rs76034601	T	G	T	Sox1.mouse_HMG_2	9	1	-	7.266626690286145	0.3578719109709244	TTGAAATGCATTCAC
chr8	102584608	102584609	chr8:102584609:G:T	rs28522620	G	T	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr8	102584766	102584767	chr8:102584767:C:T	rs7012947	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	102585771	102585772	chr8:102585772:T:C	rs73698915	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	102699229	102699230	chr8:102699230:C:T	rs140977338	C	T	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	102702916	102702917	chr8:102702917:A:G	rs151203037	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	102979688	102979689	chr8:102979689:A:T	rs57817734	A	T	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	103022374	103022375	chr8:103022375:G:A	rs566435356	G	A	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	103055680	103055681	chr8:103055681:C:T	rs2270673	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr8	103341104	103341105	chr8:103341105:T:G	rs951826	T	G	G	Sox1.mouse_HMG_2	11	1	-	2.7309843487865892	2.7309843487865892	CTGAATACCAGACTC
chr8	103574550	103574551	chr8:103574551:T:G	rs6985202	T	G	T	Sox1.mouse_HMG_2	3	1	-	7.244103950938995	0.33534917162377453	GAGAATGACATTCTT
chr8	103707290	103707291	chr8:103707291:T:A	rs2114249	T	A	T	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr8	103760313	103760314	chr8:103760314:T:C	rs3110457	T	C	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	103809702	103809703	chr8:103809703:G:A	rs1014877796	G	A	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	104232323	104232324	chr8:104232324:T:C	rs78377066	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	104326162	104326163	chr8:104326163:C:T	rs7012321	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.806563241889752	1.161160708873536	GGGAATTTCATTCTC
chr8	104326172	104326173	chr8:104326173:C:T	rs35635989	C	T	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	104467951	104467952	chr8:104467952:A:G	rs2959025	A	G	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	104665418	104665419	chr8:104665419:C:T	rs72677256	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	104694122	104694123	chr8:104694123:T:C	rs7014956	T	C	C	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr8	104856635	104856636	chr8:104856636:T:C	rs4410874	T	C	C	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr8	104891448	104891449	chr8:104891449:A:G	rs117237211	A	G	A	Sox1.mouse_HMG_2	4	1	+	5.2128186736200215	-1.6085940955400506	CTGTATTGCATTCTT
chr8	104918671	104918672	chr8:104918672:C:A	rs72670259	C	A	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	105090447	105090448	chr8:105090448:A:G	rs182319724	A	G	A	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	105117661	105117662	chr8:105117662:A:G	rs17194372	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	105117679	105117680	chr8:105117680:T:C	rs418497	T	C	T	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	105380448	105380449	chr8:105380449:C:G	rs567174437	C	G	C	Sox1.mouse_HMG_2	8	1	+	3.9253991623094437	-1.7931355002262637	CTGAATCTCACTCAC
chr8	105499302	105499303	chr8:105499303:G:A	rs72673712	G	A	G	Sox1.mouse_HMG_2	4	1	-	10.530349475491965	6.090997774198815	GTGACTATCAGTCAT
chr8	105540355	105540356	chr8:105540356:C:G	rs4273825	C	G	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	105569299	105569300	chr8:105569300:A:T	rs6993770	A	T	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr8	105642044	105642045	chr8:105642045:G:A	rs2165646	G	A	A	Sox1.mouse_HMG_2	6	1	+	5.467803296736143	6.907980718604781	CTCACTGTCATTCAA
chr8	105689494	105689495	chr8:105689495:T:C	rs1867040	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	105994733	105994734	chr8:105994734:T:C	rs7819501	T	C	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr8	106081347	106081348	chr8:106081348:G:A	rs6469038	G	A	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	106087303	106087304	chr8:106087304:A:G	rs148078989	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	106109149	106109150	chr8:106109150:T:C	rs11779516	T	C	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr8	106280511	106280512	chr8:106280512:T:C	rs78020201	T	C	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	106318444	106318445	chr8:106318445:C:G	rs114962106	C	G	C	Sox1.mouse_HMG_2	2	1	-	7.968905201940598	2.576288267094157	TTGAATACCATACAA
chr8	106331032	106331033	chr8:106331033:A:G	rs7834655	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	106785811	106785812	chr8:106785812:T:C	rs2449832	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	106936742	106936743	chr8:106936743:A:C	rs72686510	A	C	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	107068316	107068317	chr8:107068317:A:C	rs1471346	A	C	C	Sox1.mouse_HMG_2	0	1	-	5.075896595897085	5.006479762749674	TTGAATTAAATTTAG
chr8	107105186	107105187	chr8:107105187:C:A	rs10092739	C	A	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	107127683	107127684	chr8:107127684:A:G	rs10955437	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	107282907	107282908	chr8:107282908:C:T	rs62512817	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr8	107295108	107295109	chr8:107295109:G:A	rs10505105	G	A	G	Sox1.mouse_HMG_2	8	1	-	4.158573531940329	-1.4858531584416563	TTGAATGACATTTCT
chr8	107376166	107376167	chr8:107376167:T:C	rs1672181	T	C	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	107422448	107422449	chr8:107422449:A:C	rs1283670	A	C	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	107675342	107675343	chr8:107675343:C:G	rs1494973	C	G	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr8	107740313	107740314	chr8:107740314:G:T	rs13278956	G	T	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	107779968	107779969	chr8:107779969:C:T	rs16892437	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr8	107867976	107867977	chr8:107867977:A:G	rs937294	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	108081803	108081804	chr8:108081804:C:T	rs142665174	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	108259949	108259950	chr8:108259950:T:G	rs11988161	T	G	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	108584531	108584532	chr8:108584532:T:A	rs75340975	T	A	T	Sox1.mouse_HMG_2	4	1	-	13.061212849545264	6.239800080385192	ATGAATACCATTCTC
chr8	108666789	108666790	chr8:108666790:G:A	rs2173254	G	A	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	108955729	108955730	chr8:108955730:C:T	rs73303566	C	T	C	Sox1.mouse_HMG_2	14	1	+	5.252391648602487	6.127003991325223	CTGACTGACATCCAC
chr8	108979407	108979408	chr8:108979408:A:G	rs4236795	A	G	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	108999790	108999791	chr8:108999791:G:C	rs12544029	G	C	C	Sox1.mouse_HMG_2	12	1	-	3.6291661151679024	-3.271282535298462	TTGGATTGCATTCTA
chr8	109277784	109277785	chr8:109277785:T:C	rs7836793	T	C	T	Sox1.mouse_HMG_2	10	1	+	8.313510495135105	1.4655689168548234	ATGACTTACATTTAA
chr8	109277806	109277807	chr8:109277807:C:T	rs1993594	C	T	T	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	109399108	109399109	chr8:109399109:T:C	rs921959	T	C	A	Sox1.mouse_HMG_2	9	1	-	5.098103811040189	-1.810650968275031	ATAAACAACATTCAC
chr8	109534871	109534872	chr8:109534872:G:C	rs55959787	G	C	G	Sox1.mouse_HMG_2	12	1	-	4.278286659575932	-2.6221619908904317	GTGAATGGCGTTCTT
chr8	109639773	109639774	chr8:109639774:T:C	rs970873639	T	C	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	109745438	109745439	chr8:109745439:T:C	rs34966845	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr8	110559892	110559893	chr8:110559893:A:G	rs13274273	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	110570765	110570766	chr8:110570766:C:G	rs10113345	C	G	G	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	110586977	110586978	chr8:110586978:T:C	rs4321975	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	111201343	111201344	chr8:111201344:G:A	rs140667843	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	111404476	111404477	chr8:111404477:G:C	rs548597174	G	C	G	Sox1.mouse_HMG_2	12	1	+	3.0487938305944193	9.949242481060784	CTGTATAACATTGAT
chr8	111469107	111469108	chr8:111469108:G:A	rs6992309	G	A	G	Sox1.mouse_HMG_2	12	1	+	4.548249628217907	4.548249628217907	TTGAATTCCAGTGAG
chr8	111591879	111591880	chr8:111591880:G:A	rs12678435	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	111952178	111952179	chr8:111952179:G:C	rs17619552	G	C	g	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr8	111963139	111963140	chr8:111963140:T:G	rs12546646	T	G	T	Sox1.mouse_HMG_2	13	1	+	4.808226302024225	3.0564721674098685	GTGATTTTCATTCTT
chr8	112267794	112267795	chr8:112267795:C:T	rs185903466	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr8	112736269	112736270	chr8:112736270:G:A	rs16884004	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	112768574	112768575	chr8:112768575:C:T	rs10955633	C	T	T	Sox1.mouse_HMG_2	0	1	+	4.848147386528506	4.5822041927590735	CTGAGTTACATTCTG
chr8	113163785	113163786	chr8:113163786:G:C	rs72685896	G	C	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	113740530	113740531	chr8:113740531:A:G	rs78106552	A	G	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr8	113788434	113788435	chr8:113788435:G:T	chr8:113788435:G:T	G	T	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	114046995	114046996	chr8:114046996:A:G	rs10955697	A	G	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr8	114438759	114438760	chr8:114438760:T:C	rs62543461	T	C	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr8	114630306	114630307	chr8:114630307:A:C	rs7829520	A	C	A	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr8	114712711	114712712	chr8:114712712:G:A	rs7830645	G	A	A	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr8	114785334	114785335	chr8:114785335:T:C	rs80247303	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	114972904	114972905	chr8:114972905:T:C	rs694614	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	114983122	114983123	chr8:114983123:C:T	rs2575924	C	T	T	Sox1.mouse_HMG_2	0	1	+	5.69173671104499	5.425793517275557	CTGAATTGGAGTCAG
chr8	115081995	115081996	chr8:115081996:C:G	rs1494750	C	G	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	115099552	115099553	chr8:115099553:G:A	rs11986455	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	115315064	115315065	chr8:115315065:T:A	rs143142224	T	A	T	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr8	115563444	115563445	chr8:115563445:C:G	rs6998861	C	G	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	115659139	115659140	chr8:115659140:G:T	rs10086741	G	T	G	Sox1.mouse_HMG_2	12	1	-	12.556685078706884	5.656236428240521	TTGAATTACATTCTT
chr8	115865115	115865116	chr8:115865116:T:C	rs6469608	T	C	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr8	115930541	115930542	chr8:115930542:T:C	rs13256823	T	C	C	Sox1.mouse_HMG_2	10	1	+	4.457072331658675	-2.3908692466216057	CTGAATGTCTTTCTT
chr8	116054222	116054223	chr8:116054223:T:C	rs962692	T	C	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	116080908	116080909	chr8:116080909:A:G	rs568062887	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr8	116097425	116097426	chr8:116097426:G:C	rs117270576	G	C	G	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	116601560	116601561	chr8:116601561:C:A	rs10435543	C	A	c	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	116636479	116636480	chr8:116636480:C:T	rs6988452	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	116691269	116691270	chr8:116691270:T:G	rs7823271	T	G	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	116867414	116867415	chr8:116867415:G:A	rs7820245	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr8	117203061	117203062	chr8:117203062:A:G	rs6998120	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	117231872	117231873	chr8:117231873:A:G	rs924388	A	G	G	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr8	117232387	117232388	chr8:117232388:T:C	rs1392045	T	C	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	117385432	117385433	chr8:117385433:G:A	rs11785996	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr8	117560225	117560226	chr8:117560226:T:G	chr8:117560226:T:G	T	G	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	117582305	117582306	chr8:117582306:A:G	rs7840705	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	117646477	117646478	chr8:117646478:A:T	chr8:117646478:A:T	A	T	A	Sox1.mouse_HMG_2	5	1	-	5.0579038538918475	-1.8508509254233716	GAAAATATCATTCAA
chr8	117663963	117663964	chr8:117663964:C:T	rs116235315	C	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	117895554	117895555	chr8:117895555:C:T	rs118035041	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	117957428	117957429	chr8:117957429:G:A	rs139559707	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	117957435	117957436	chr8:117957436:C:T	chr8:117957436:C:T	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	117969843	117969844	chr8:117969844:C:T	rs79194317	C	T	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	118093972	118093973	chr8:118093973:C:T	rs17431784	C	T	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	118262009	118262010	chr8:118262010:T:G	rs4876407	T	G	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr8	118386805	118386806	chr8:118386806:C:T	rs744079	C	T	c	Sox1.mouse_HMG_2	10	1	-	3.9413998489046524	-0.15394421365053101	ATGACATGCAGTCAT
chr8	118517907	118517908	chr8:118517908:C:T	rs74499227	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	118585140	118585141	chr8:118585141:A:G	rs2460960	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	118657128	118657129	chr8:118657129:A:G	rs769322	A	G	A	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr8	118685784	118685785	chr8:118685785:A:G	rs4876424	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	118685798	118685799	chr8:118685799:C:A	rs73709173	C	A	C	Sox1.mouse_HMG_2	8	1	+	10.036584491215931	5.187087675703833	CTGAGTAACATTCAT
chr8	119008678	119008679	chr8:119008679:C:G	rs10955919	C	G	G	Sox1.mouse_HMG_2	8	1	+	3.949439150001128	-1.7690955125345798	ATGACTAACACTCTG
chr8	119131626	119131627	chr8:119131627:T:C	rs75387094	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	119204383	119204384	chr8:119204384:G:T	rs13253285	G	T	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	119497184	119497185	chr8:119497185:T:C	rs35646652	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	119569041	119569042	chr8:119569042:C:T	rs3765048	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	119648693	119648694	chr8:119648694:G:A	rs114380890	G	A	G	Sox1.mouse_HMG_2	7	1	-	6.971824802031906	6.510880348324799	TTGAATGCCCTTCAC
chr8	119671505	119671506	chr8:119671506:T:C	rs1002850	T	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	119701411	119701412	chr8:119701412:G:A	rs987534	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr8	119873401	119873402	chr8:119873402:A:C	rs186682194	A	C	.	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	119900866	119900867	chr8:119900867:A:G	rs74693645	A	G	A	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr8	119912296	119912297	chr8:119912297:A:G	rs939241	A	G	A	Sox1.mouse_HMG_2	11	1	+	4.285393635291979	4.285393635291979	TTGACTGGCATACAC
chr8	120036298	120036299	chr8:120036299:A:T	rs73315928	A	T	A	Sox1.mouse_HMG_2	5	1	-	7.3614452761894835	0.45269049687426366	ATGACTAACTTTCAC
chr8	120125378	120125379	chr8:120125379:C:T	rs77121399	C	T	C	Sox1.mouse_HMG_2	1	1	+	3.801616824388653	8.445609131881886	TCGAAGTCCATTCAT
chr8	120250535	120250536	chr8:120250536:A:G	rs2305607	A	G	G	Sox1.mouse_HMG_2	13	1	+	5.1778807811119245	0.23176309333927636	CTGAAAAGCAGTCAA
chr8	120438372	120438373	chr8:120438373:T:C	rs12548799	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	120625590	120625591	chr8:120625591:T:C	rs187623543	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr8	120743105	120743106	chr8:120743106:C:G	rs75936604	C	G	C	Sox1.mouse_HMG_2	14	1	-	4.872053042123653	5.150508816188656	CTGACTTGCTTTCAG
chr8	121132755	121132756	chr8:121132756:C:T	rs1560771	C	T	T	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	121164001	121164002	chr8:121164002:A:G	rs114386357	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	121275974	121275975	chr8:121275975:T:C	rs1466942	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.2740815446463545	-2.6346732346688655	ATAAAATTCATTCAT
chr8	121324702	121324703	chr8:121324703:A:G	rs56023279	A	G	G	Sox1.mouse_HMG_2	11	1	-	7.020636915487562	0.11188213617234183	GTGAAAGACATTCAG
chr8	121324703	121324704	chr8:121324704:A:G	rs56019878	A	G	G	Sox1.mouse_HMG_2	10	1	-	7.020636915487562	0.1726953372072812	GTGAAAGACATTCAG
chr8	121376947	121376948	chr8:121376948:T:C	rs10112343	T	C	C	Sox1.mouse_HMG_2	14	1	+	3.8938303659781472	3.0192180232554113	TGGAAATACATTCAT
chr8	121376955	121376956	chr8:121376956:T:C	rs10112349	T	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	121481186	121481187	chr8:121481187:A:G	rs7839194	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr8	121513370	121513371	chr8:121513371:T:A	rs7003256	T	A	T	Sox1.mouse_HMG_2	13	1	+	5.205126090446683	8.399489643604976	CTGCATACCATTCTG
chr8	121603220	121603221	chr8:121603221:G:A	rs12056571	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	121637383	121637384	chr8:121637384:A:C	rs6470014	A	C	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	121784936	121784937	chr8:121784937:T:C	rs75876127	T	C	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr8	122281295	122281296	chr8:122281296:T:C	rs7844082	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	122334806	122334807	chr8:122334807:G:C	rs34811381	G	C	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	122478639	122478640	chr8:122478640:T:G	chr8:122478640:T:G	T	G	T	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	122687133	122687134	chr8:122687134:C:T	rs767065409	C	T	C	Sox1.mouse_HMG_2	7	1	-	4.968600380666258	5.669655200207333	AGGAAGAGCATTCAT
chr8	122687139	122687140	chr8:122687140:C:G	rs11777104	C	G	C	Sox1.mouse_HMG_2	1	1	-	4.968600380666258	5.273071559744833	AGGAAGAGCATTCAT
chr8	122718637	122718638	chr8:122718638:A:G	rs7822857	A	G	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	122758766	122758767	chr8:122758767:C:T	rs16897381	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr8	122758799	122758800	chr8:122758800:G:A	rs117120259	G	A	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	122785249	122785250	chr8:122785250:C:A	rs13255606	C	A	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	122813489	122813490	chr8:122813490:G:A	rs117152515	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	122969512	122969513	chr8:122969513:T:C	chr8:122969513:T:C	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr8	123037331	123037332	chr8:123037332:C:A	rs79535665	C	A	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	123037348	123037349	chr8:123037349:G:T	rs2385076	G	T	T	Sox1.mouse_HMG_2	12	1	-	5.774292647082257	-1.1261560033841072	AGAAATTACATTCAA
chr8	123390471	123390472	chr8:123390472:A:G	rs74672583	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr8	123517136	123517137	chr8:123517137:A:G	rs7834818	A	G	G	Sox1.mouse_HMG_2	1	1	-	4.412609905974467	-0.2313824015187661	CTGACTGCCCTTCAA
chr8	123536195	123536196	chr8:123536196:G:A	rs4436105	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	123578267	123578268	chr8:123578268:T:C	rs72711207	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	123599151	123599152	chr8:123599152:G:C	rs78379790	G	C	G	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr8	123670966	123670967	chr8:123670967:C:T	rs113926653	C	T	C	Sox1.mouse_HMG_2	2	1	-	4.275491770169337	-0.36991076284687885	AAGTATTTCATTCAT
chr8	123670969	123670970	chr8:123670970:G:A	rs62518593	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	123727895	123727896	chr8:123727896:T:C	rs17342982	T	C	t	Sox1.mouse_HMG_2	6	1	+	4.200688631012533	0.6892790630655615	ATGTCTTACATTCTT
chr8	123748128	123748129	chr8:123748129:T:G	rs7460871	T	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	123769120	123769121	chr8:123769121:T:C	rs7836620	T	C	C	Sox1.mouse_HMG_2	1	1	+	3.349831186787624	-1.2941611207056085	ATGAATACGATACAG
chr8	123792428	123792429	chr8:123792429:C:T	rs7828192	C	T	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr8	123875563	123875564	chr8:123875564:T:C	rs59864564	T	C	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	124181336	124181337	chr8:124181337:T:G	chr8:124181337:T:G	T	G	t	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr8	124422842	124422843	chr8:124422843:G:C	rs72710899	G	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	124527383	124527384	chr8:124527384:G:A	rs113111978	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	124527384	124527385	chr8:124527385:C:T	rs560591683	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	124588168	124588169	chr8:124588169:T:C	rs7010757	T	C	T	Sox1.mouse_HMG_2	14	1	-	5.248416594562987	5.413057842457935	ATGAAAATCATTCTA
chr8	124590142	124590143	chr8:124590143:C:T	rs7839970	C	T	C	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr8	124619039	124619040	chr8:124619040:T:A	rs4870913	T	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr8	124719019	124719020	chr8:124719020:T:C	rs7842864	T	C	T	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	124760039	124760040	chr8:124760040:A:G	rs13270557	A	G	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	125070262	125070263	chr8:125070263:C:T	rs112064300	C	T	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	125149785	125149786	chr8:125149786:T:C	rs75358093	T	C	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr8	125156721	125156722	chr8:125156722:C:A	rs74493457	C	A	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	125213322	125213323	chr8:125213323:C:G	rs568582435	C	G	C	Sox1.mouse_HMG_2	8	1	+	5.019142984308151	-0.6993916782275568	ATTAATTGCATTCTC
chr8	125294674	125294675	chr8:125294675:G:A	rs10101690	G	A	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr8	125358636	125358637	chr8:125358637:T:G	rs6651237	T	G	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	125371495	125371496	chr8:125371496:A:G	rs10104088	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	125452291	125452292	chr8:125452292:C:T	rs748356875	C	T	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr8	125452339	125452340	chr8:125452340:G:A	rs56128522	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	125517163	125517164	chr8:125517164:G:C	rs4352874	G	C	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	125517170	125517171	chr8:125517171:T:C	rs4347008	T	C	C	Sox1.mouse_HMG_2	13	1	-	6.39172875619838	1.4456110684257317	ATCAATGCCAGTCAG
chr8	125553906	125553907	chr8:125553907:G:A	rs59256158	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	125579654	125579655	chr8:125579655:C:G	rs565233848	C	G	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	125931700	125931701	chr8:125931701:C:A	rs73705213	C	A	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	126232720	126232721	chr8:126232721:A:G	rs7014830	A	G	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	126260596	126260597	chr8:126260597:C:T	rs11780933	C	T	T	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	126327260	126327261	chr8:126327261:C:G	rs11782116	C	G	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	126450738	126450739	chr8:126450739:G:T	rs2223038	G	T	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	126474698	126474699	chr8:126474699:T:G	rs192997579	T	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	126896552	126896553	chr8:126896553:T:A	rs1003273427	T	A	T	Sox1.mouse_HMG_2	6	1	+	3.6834414976502328	4.524446932391628	ATCAAATGCATTCAT
chr8	126960541	126960542	chr8:126960542:G:A	rs71510337	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	127092097	127092098	chr8:127092098:C:A	rs13254738	C	A	C	Sox1.mouse_HMG_2	8	1	+	5.865069892505082	1.0155730769929843	CAGAATGCCATTCTA
chr8	127307835	127307836	chr8:127307836:G:A	rs115430254	G	A	G	Sox1.mouse_HMG_2	11	1	-	3.5824599889359403	10.491214768251162	CTGAATGTCATCCTC
chr8	127307848	127307849	chr8:127307849:A:C	rs6983872	A	C	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	127564089	127564090	chr8:127564090:G:C	rs10956374	G	C	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	127639357	127639358	chr8:127639358:C:T	rs534642903	C	T	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr8	127663525	127663526	chr8:127663526:C:T	rs7835137	C	T	T	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr8	127663560	127663561	chr8:127663561:A:G	rs184070151	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr8	127664058	127664059	chr8:127664059:C:T	rs12681903	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr8	127706197	127706198	chr8:127706198:A:G	rs17186926	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr8	127899370	127899371	chr8:127899371:T:A	rs141714723	T	A	T	Sox1.mouse_HMG_2	1	1	+	5.65765661496152	1.0136643074682867	CTGAATCTCATTTAA
chr8	128014406	128014407	chr8:128014407:T:C	rs10956406	T	C	C	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	128014409	128014410	chr8:128014410:C:T	rs80285978	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	128128168	128128169	chr8:128128169:G:A	rs141163486	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr8	128128179	128128180	chr8:128128180:A:G	rs4733835	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	128203562	128203563	chr8:128203563:C:T	rs7824798	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr8	128203599	128203600	chr8:128203600:G:T	rs7825166	G	T	G	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr8	128213255	128213256	chr8:128213256:A:G	rs11774172	A	G	A	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	128318021	128318022	chr8:128318022:C:T	rs4470994	C	T	T	Sox1.mouse_HMG_2	12	1	+	3.4730911500006068	-1.1994959536676473	TTGTATGGCATTCTC
chr8	128388851	128388852	chr8:128388852:C:A	rs16902853	C	A	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	128388887	128388888	chr8:128388888:G:T	rs1430293572	G	T	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr8	128426772	128426773	chr8:128426773:T:A	rs12544478	T	A	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	128426804	128426805	chr8:128426805:T:G	rs6470627	T	G	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	128429709	128429710	chr8:128429710:G:A	rs1356330	G	A	G	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	128463791	128463792	chr8:128463792:C:T	rs1356328	C	T	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr8	128524801	128524802	chr8:128524802:C:T	rs16903058	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	128576961	128576962	chr8:128576962:T:G	chr8:128576962:T:G	T	G	T	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	128842122	128842123	chr8:128842123:G:A	rs10956448	G	A	G	Sox1.mouse_HMG_2	8	1	-	7.738115145155845	2.093688454773859	ATAAATTCCAGTCAG
chr8	129001724	129001725	chr8:129001725:C:T	rs7836274	C	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	129172929	129172930	chr8:129172930:A:G	rs75777619	A	G	a	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr8	129206098	129206099	chr8:129206099:T:C	rs75281442	T	C	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	129245822	129245823	chr8:129245823:T:C	rs10099663	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	129594063	129594064	chr8:129594064:G:A	rs6470743	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	129635738	129635739	chr8:129635739:T:G	rs34547718	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	129685379	129685380	chr8:129685380:A:C	rs372056454	A	C	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr8	129707471	129707472	chr8:129707472:A:T	rs7816131	A	T	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	129707874	129707875	chr8:129707875:T:C	rs10110842	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	129855965	129855966	chr8:129855966:G:A	rs11783021	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	130132363	130132364	chr8:130132364:T:C	chr8:130132364:T:C	T	C	T	Sox1.mouse_HMG_2	3	1	-	4.519717650131281	-2.3890371291839387	GTGACTAGAAGTCAA
chr8	130152753	130152754	chr8:130152754:C:T	rs74370122	C	T	C	Sox1.mouse_HMG_2	0	1	+	4.270541676368041	4.004598482598609	CAGAATCCCATTCTT
chr8	130195732	130195733	chr8:130195733:G:A	rs11781752	G	A	A	Sox1.mouse_HMG_2	12	1	-	6.161963841282422	1.4893767376141673	ATTAATTACAGTCAC
chr8	130314043	130314044	chr8:130314044:T:C	rs531898218	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr8	130396319	130396320	chr8:130396320:T:C	rs11784953	T	C	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	130404745	130404746	chr8:130404746:G:A	chr8:130404746:G:A	G	A	G	Sox1.mouse_HMG_2	7	1	-	3.6971828577369177	3.2362384040298107	GTAAACACCATTCAC
chr8	130499735	130499736	chr8:130499736:G:A	rs28676679	G	A	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	130555104	130555105	chr8:130555105:A:C	rs79219679	A	C	A	Sox1.mouse_HMG_2	3	1	+	2.8807128643907283	-4.028041914924494	TGGAATAGCATGCAG
chr8	130573877	130573878	chr8:130573878:A:G	rs7820066	A	G	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr8	130642018	130642019	chr8:130642019:T:G	rs4584156	T	G	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	130642062	130642063	chr8:130642063:T:C	rs4446756	T	C	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	130762629	130762630	chr8:130762630:T:C	rs16904352	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.994978724544964	-0.9137760547702553	GTGAATAACAGTAAC
chr8	130762653	130762654	chr8:130762654:C:T	rs370928658	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr8	130769763	130769764	chr8:130769764:G:A	rs13259734	G	A	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr8	130803063	130803064	chr8:130803064:C:T	rs550458880	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr8	130803086	130803087	chr8:130803087:A:G	rs12678910	A	G	A	Sox1.mouse_HMG_2	13	1	+	5.388348447639572	0.44223075986692406	ATTACTTGCATTCAA
chr8	130803587	130803588	chr8:130803588:T:C	rs4736688	T	C	C	Sox1.mouse_HMG_2	1	1	+	4.430655899480455	-0.21333640801277898	ATAAATTGCTTTCAT
chr8	130823672	130823673	chr8:130823673:C:T	rs263262	C	T	T	Sox1.mouse_HMG_2	7	1	-	8.66016770359032	9.361222523131394	ATGAATAGCACTCAA
chr8	130848249	130848250	chr8:130848250:A:G	rs3793393	A	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	130881350	130881351	chr8:130881351:G:C	rs10098660	G	C	C	Sox1.mouse_HMG_2	14	1	-	6.200765929408426	5.922310155343424	AGAAATATCATTCAC
chr8	131032387	131032388	chr8:131032388:A:T	rs558499875	A	T	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr8	131404645	131404646	chr8:131404646:G:A	rs11774542	G	A	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	131446022	131446023	chr8:131446023:A:G	rs1430314	A	G	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr8	131555670	131555671	chr8:131555671:G:A	rs461349	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	131715403	131715404	chr8:131715404:T:A	rs17556645	T	A	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr8	132489624	132489625	chr8:132489625:G:C	rs10091289	G	C	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr8	132874504	132874505	chr8:132874505:T:C	rs61429421	T	C	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr8	132907799	132907800	chr8:132907800:T:G	rs116981332	T	G	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr8	133059587	133059588	chr8:133059588:T:C	rs2741200	T	C	T	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr8	133069380	133069381	chr8:133069381:C:T	chr8:133069381:C:T	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	133139694	133139695	chr8:133139695:C:T	rs6983548	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	133173488	133173489	chr8:133173489:G:T	rs4736439	G	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	133173538	133173539	chr8:133173539:C:A	rs116711765	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	133182734	133182735	chr8:133182735:A:T	rs115812147	A	T	A	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr8	133182772	133182773	chr8:133182773:G:T	rs117951453	G	T	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	133182787	133182788	chr8:133182788:G:A	rs147596449	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	133248104	133248105	chr8:133248105:T:C	rs2233337	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr8	133251209	133251210	chr8:133251210:G:A	rs3779939	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr8	133266736	133266737	chr8:133266737:C:G	rs3779932	C	G	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr8	133442226	133442227	chr8:133442227:G:A	rs4736453	G	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr8	133579855	133579856	chr8:133579856:T:G	rs72722104	T	G	T	Sox1.mouse_HMG_2	5	1	+	3.016615216771702	-3.8921395625435182	ATGAATAGCTTTAAT
chr8	133632299	133632300	chr8:133632300:T:C	rs10090323	T	C	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr8	133632325	133632326	chr8:133632326:C:T	rs13256941	C	T	C	Sox1.mouse_HMG_2	8	1	+	8.233624703596652	2.5891980132146655	CTGAAATACATTCAC
chr8	133655419	133655420	chr8:133655420:G:C	rs10097033	G	C	G	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr8	133730420	133730421	chr8:133730421:G:C	rs62517261	G	C	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	133804887	133804888	chr8:133804888:C:T	rs7388071	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr8	134086012	134086013	chr8:134086013:T:C	rs1457461	T	C	c	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	134152551	134152552	chr8:134152552:C:G	rs75949231	C	G	C	Sox1.mouse_HMG_2	8	1	-	3.194292972067156	8.912827634602865	GTGAATAGGCTTCAT
chr8	134401310	134401311	chr8:134401311:G:A	rs3935426	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr8	134782695	134782696	chr8:134782696:T:C	rs62523811	T	C	t	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	134790648	134790649	chr8:134790649:G:A	rs7831733	G	A	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	134972406	134972407	chr8:134972407:T:C	chr8:134972407:T:C	T	C	T	Sox1.mouse_HMG_2	6	1	+	3.6291661151679024	0.11775654722093065	TTGAATTGCATGCTA
chr8	135054312	135054313	chr8:135054313:A:G	rs56369003	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr8	135056199	135056200	chr8:135056200:T:G	rs1904863	T	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	135556448	135556449	chr8:135556449:T:A	rs10094413	T	A	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	135714506	135714507	chr8:135714507:C:T	rs7814248	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	136072666	136072667	chr8:136072667:G:A	rs77764443	G	A	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	136122505	136122506	chr8:136122506:C:T	rs34751530	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr8	136131748	136131749	chr8:136131749:T:A	rs117217739	T	A	T	Sox1.mouse_HMG_2	11	1	+	3.707635268957937	-3.2011195103572825	TTGGCTTACAGTCAT
chr8	136387678	136387679	chr8:136387679:T:C	rs2317933	T	C	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr8	137215294	137215295	chr8:137215295:C:T	rs73389843	C	T	T	Sox1.mouse_HMG_2	10	1	-	13.93327051562787	9.837926453072688	ATGAATTACAGTCAT
chr8	137335012	137335013	chr8:137335013:T:C	rs72723724	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	137591934	137591935	chr8:137591935:A:G	rs4909374	A	G	G	Sox1.mouse_HMG_2	1	1	-	8.112380338524074	3.4683880310308406	CTGAAAGCCATTCAT
chr8	137789696	137789697	chr8:137789697:G:A	rs11166762	G	A	G	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr8	137873560	137873561	chr8:137873561:C:G	rs4909711	C	G	G	Sox1.mouse_HMG_2	10	1	-	6.601536737986947	2.5061926754317634	CGGAATTCCAGTCAA
chr8	138063670	138063671	chr8:138063671:C:A	rs4263803	C	A	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	138176554	138176555	chr8:138176555:G:A	rs4430137	G	A	G	Sox1.mouse_HMG_2	14	1	-	4.240655059675525	5.115267402398262	TACAATGACATTCAC
chr8	138415790	138415791	chr8:138415791:G:T	rs35925122	G	T	G	Sox1.mouse_HMG_2	2	1	-	6.450152634501986	7.197367036332206	GTCACTGTCATTCAT
chr8	138772551	138772552	chr8:138772552:C:T	rs369128844	C	T	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr8	139029179	139029180	chr8:139029180:C:T	rs11776697	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	139106551	139106552	chr8:139106552:T:C	rs13265485	T	C	C	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr8	139293925	139293926	chr8:139293926:A:C	rs752083185	A	C	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr8	139394621	139394622	chr8:139394622:A:G	rs73723243	A	G	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	139598925	139598926	chr8:139598926:T:C	rs2447340	T	C	T	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr8	139598932	139598933	chr8:139598933:A:G	rs2545435	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr8	139712798	139712799	chr8:139712799:A:G	rs9324513	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr8	139830942	139830943	chr8:139830943:C:G	rs10094108	C	G	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	139830955	139830956	chr8:139830956:C:T	rs73364148	C	T	C	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr8	139924892	139924893	chr8:139924893:A:G	rs113672957	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr8	139924900	139924901	chr8:139924901:T:C	rs2067588	T	C	T	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr8	140299665	140299666	chr8:140299666:C:T	rs11777506	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr8	140302655	140302656	chr8:140302656:G:A	rs78320919	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr8	140335343	140335344	chr8:140335344:G:A	rs7834382	G	A	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr8	141085910	141085911	chr8:141085911:T:C	rs4961325	T	C	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr8	141199443	141199444	chr8:141199444:C:T	rs6578153	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr8	141289411	141289412	chr8:141289412:A:T	rs4961355	A	T	A	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	141489514	141489515	chr8:141489515:C:A	rs12547132	C	A	C	Sox1.mouse_HMG_2	12	1	+	4.457072331658675	-2.443376318807689	CTGAATGTCCTTCTT
chr8	141814002	141814003	chr8:141814003:G:T	rs1205072565	G	T	G	Sox1.mouse_HMG_2	8	1	-	2.834751564741184	-2.014745250770915	ATGAATAACCTGCAC
chr8	141865083	141865084	chr8:141865084:C:T	rs79431719	C	T	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr8	142238108	142238109	chr8:142238109:C:T	rs7830520	C	T	C	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr8	142357153	142357154	chr8:142357154:G:A	rs10091919	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr8	142357188	142357189	chr8:142357189:A:T	rs35850763	A	T	A	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr8	142362448	142362449	chr8:142362449:C:A	rs12682505	C	A	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr8	142528551	142528552	chr8:142528552:T:C	rs7838992	T	C	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	142700098	142700099	chr8:142700099:C:T	rs752532574	C	T	C	Sox1.mouse_HMG_2	7	1	-	3.4225324410637157	4.123587260604792	CTGAATAGCTTTTAG
chr8	142762832	142762833	chr8:142762833:G:A	rs2717556	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr8	142843957	142843958	chr8:142843958:A:G	rs56400819	A	G	g	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr8	143143175	143143176	chr8:143143176:A:G	rs11782029	A	G	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr8	143375157	143375158	chr8:143375158:A:G	rs4874105	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.903176201998182	-2.944765376282099	CTGGATTTCATTCTG
chr8	143695071	143695072	chr8:143695072:T:C	rs3204170	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.4214889393145542	-1.2225033681786788	CTGAACCTCATTCAA
chr8	143963404	143963405	chr8:143963405:T:A	rs11783655	T	A	t	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr8	144587393	144587394	chr8:144587394:T:C	rs115550492	T	C	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr8	144790363	144790364	chr8:144790364:C:T	rs1060859	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr8	144853338	144853339	chr8:144853339:C:G	rs1052199988	C	G	C	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr9	46306	46307	chr9:46307:T:C	rs62531204	T	C	.	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	206131	206132	chr9:206132:A:C	rs10757083	A	C	.	Sox1.mouse_HMG_2	11	1	-	8.6315331163781	1.7227783370628784	CTGAATAACTTTCAA
chr9	439101	439102	chr9:439102:G:C	rs10733508	G	C	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	479156	479157	chr9:479157:G:A	rs10974741	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	479586	479587	chr9:479587:G:C	rs10815059	G	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	612356	612357	chr9:612357:G:T	rs10115504	G	T	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	649749	649750	chr9:649750:C:T	rs2031175	C	T	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr9	693023	693024	chr9:693024:T:G	rs1323260	T	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr9	701025	701026	chr9:701026:A:G	rs7024449	A	G	A	Sox1.mouse_HMG_2	10	1	-	3.955362195062147	-2.8925793832181337	AAGAAAAGCATTCAA
chr9	751195	751196	chr9:751196:G:A	rs72693501	G	A	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	751569	751570	chr9:751570:T:G	rs7875193	T	G	G	Sox1.mouse_HMG_2	11	1	+	2.062551273546715	-4.846203505768505	GTGACTTGCTGTCAC
chr9	808274	808275	chr9:808275:C:G	rs7047724	C	G	G	Sox1.mouse_HMG_2	7	1	+	3.7156289710077752	3.4112588721347694	ATGAGTACGATTCAC
chr9	808281	808282	chr9:808282:C:A	rs7047731	C	A	C	Sox1.mouse_HMG_2	14	1	+	3.7156289710077752	3.272531949047825	ATGAGTACGATTCAC
chr9	1219328	1219329	chr9:1219329:T:C	rs10960480	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr9	1429098	1429099	chr9:1429099:A:C	rs12380797	A	C	A	Sox1.mouse_HMG_2	1	1	-	7.9612882001512455	3.0128247135794353	ATGAATTTCATTTTT
chr9	1628467	1628468	chr9:1628468:G:A	rs702188	G	A	A	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr9	1838134	1838135	chr9:1838135:C:T	rs10124781	C	T	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr9	2109710	2109711	chr9:2109711:T:C	rs10114544	T	C	T	Sox1.mouse_HMG_2	10	1	+	7.396473190843517	0.5485316125632355	AAAAATTACATTCAT
chr9	2241766	2241767	chr9:2241767:C:G	rs1408334	C	G	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	2241768	2241769	chr9:2241769:T:C	chr9:2241769:T:C	T	C	T	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr9	2241775	2241776	chr9:2241776:C:T	rs74490597	C	T	C	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr9	2241784	2241785	chr9:2241785:G:C	rs138659811	G	C	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr9	2419581	2419582	chr9:2419582:G:A	rs872040	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr9	2489727	2489728	chr9:2489728:C:A	rs12686800	C	A	C	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr9	2662403	2662404	chr9:2662404:A:G	rs7034291	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.13936296697599	-3.7693918123392303	CTGGATGTCATTCTA
chr9	2662406	2662407	chr9:2662407:C:T	rs72692580	C	T	C	Sox1.mouse_HMG_2	2	1	-	3.13936296697599	-1.506039566040228	CTGGATGTCATTCTA
chr9	2925346	2925347	chr9:2925347:C:G	rs10968985	C	G	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr9	2968043	2968044	chr9:2968044:C:A	rs3858035	C	A	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr9	2994083	2994084	chr9:2994084:T:C	rs7041442	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	3058484	3058485	chr9:3058485:A:G	rs11791572	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr9	3200430	3200431	chr9:3200431:A:G	rs115090082	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr9	3308708	3308709	chr9:3308709:A:G	rs2986699	A	G	G	Sox1.mouse_HMG_2	9	1	-	3.5296529989839995	3.5296529989839995	CTGAATAGGTTTCAT
chr9	3646816	3646817	chr9:3646817:A:G	rs569320013	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.4062834320794018	-3.502471347235815	GCTAATAGCATTCAC
chr9	3740759	3740760	chr9:3740760:A:G	rs112653204	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	3804276	3804277	chr9:3804277:C:G	rs12344172	C	G	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr9	3828608	3828609	chr9:3828609:A:G	rs10118031	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	3828695	3828696	chr9:3828696:A:G	rs12001442	A	G	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	3828713	3828714	chr9:3828714:A:G	rs10973702	A	G	A	Sox1.mouse_HMG_2	13	1	-	6.571978874675435	3.4456264187043804	GAGAATTCCATTCTC
chr9	3830453	3830454	chr9:3830454:G:A	rs186684793	G	A	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr9	3859603	3859604	chr9:3859604:C:T	rs16919799	C	T	T	Sox1.mouse_HMG_2	7	1	+	5.003095740024567	4.54215128631746	ATCACTCCCATTCAT
chr9	3885058	3885059	chr9:3885059:T:C	rs12235645	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	3946606	3946607	chr9:3946607:T:A	rs57862843	T	A	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	3961491	3961492	chr9:3961492:G:A	rs635171	G	A	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr9	4005057	4005058	chr9:4005058:G:T	rs146737590	G	T	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	4027292	4027293	chr9:4027293:G:C	rs637742	G	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	4163334	4163335	chr9:4163335:T:C	rs10448238	T	C	T	Sox1.mouse_HMG_2	0	1	-	6.166886561937474	5.162650329302273	ATGAATTTCAGACAT
chr9	4183037	4183038	chr9:4183038:A:T	rs7025204	A	T	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	4183057	4183058	chr9:4183058:C:T	rs138983281	C	T	C	Sox1.mouse_HMG_2	14	1	-	3.092701830989921	2.928060583094973	ATGACTTCCAGACAG
chr9	4209370	4209371	chr9:4209371:T:C	rs7034559	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.162352814643457	-1.7464019646717628	ATGAATGCCAGTAAC
chr9	4306644	4306645	chr9:4306645:C:T	rs1571584	C	T	C	Sox1.mouse_HMG_2	12	1	+	8.349290221837311	3.676703118169055	TGGAATGGCATTCAG
chr9	4306785	4306786	chr9:4306786:T:C	rs61632820	T	C	T	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr9	4339360	4339361	chr9:4339361:T:G	rs1009740243	T	G	T	Sox1.mouse_HMG_2	0	1	-	5.371937150598973	4.703060944880614	ATGAACACAATTCAT
chr9	4339418	4339419	chr9:4339419:T:C	rs144988631	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	4339461	4339462	chr9:4339462:C:G	rs768225813	C	G	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr9	4654144	4654145	chr9:4654145:C:T	rs7037867	C	T	t	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr9	4654154	4654155	chr9:4654155:T:C	rs7026191	T	C	t	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	4753901	4753902	chr9:4753902:C:T	rs34639258	C	T	T	Sox1.mouse_HMG_2	10	1	-	3.9235463067583995	-0.1717977557967839	TTCACTGGCAGTCAT
chr9	4793797	4793798	chr9:4793798:G:T	rs296847	G	T	G	Sox1.mouse_HMG_2	14	1	-	4.1546316701117245	3.7115346481517744	ATCAATCACAGTCAC
chr9	4826632	4826633	chr9:4826633:T:C	rs149826988	T	C	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	4904806	4904807	chr9:4904807:C:G	rs72699528	C	G	C	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr9	5497345	5497346	chr9:5497346:G:T	rs10815239	G	T	T	Sox1.mouse_HMG_2	14	1	-	2.9331774504742167	2.4900804285142666	GGGGATATCATTCAC
chr9	5617757	5617758	chr9:5617758:C:G	rs4288429	C	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr9	5633386	5633387	chr9:5633387:T:C	rs75390132	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.251245578723593	-1.657509200591626	TTGAACTCCATTCTT
chr9	5688386	5688387	chr9:5688387:C:A	rs62557384	C	A	C	Sox1.mouse_HMG_2	8	1	+	6.094825377502506	1.2453285619904078	ATGACTGGCCTTCAT
chr9	5799488	5799489	chr9:5799489:G:A	rs2797516	G	A	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	5859799	5859800	chr9:5859800:G:A	rs7041923	G	A	G	Sox1.mouse_HMG_2	12	1	-	8.250145301533648	3.5775581978653905	AGGAATAGCAGTCAC
chr9	5896222	5896223	chr9:5896223:C:T	rs117685531	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr9	6054793	6054794	chr9:6054794:C:T	rs72699150	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	6160647	6160648	chr9:6160648:C:T	rs2210462	C	T	C	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr9	6306060	6306061	chr9:6306061:G:A	rs3858051	G	A	a	Sox1.mouse_HMG_2	10	1	+	3.9129196728587763	-0.18242438969640828	GAGAATAGCAGTCTA
chr9	6544765	6544766	chr9:6544766:T:C	rs4419859	T	C	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	6566601	6566602	chr9:6566602:C:A	rs7039182	C	A	A	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	6566615	6566616	chr9:6566616:C:T	rs75477221	C	T	C	Sox1.mouse_HMG_2	13	1	+	7.671028272310355	10.797380728281409	ATGACTAACATTCCG
chr9	6759341	6759342	chr9:6759342:C:A	rs114354511	C	A	C	Sox1.mouse_HMG_2	14	1	+	4.427173579329225	3.984076557369275	GTGACTAATATTCTC
chr9	6869286	6869287	chr9:6869287:C:G	rs371086531	C	G	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr9	6997638	6997639	chr9:6997639:A:G	rs946929	A	G	a	Sox1.mouse_HMG_2	14	1	+	10.139686118331868	10.304327366226815	TTGACTAACAGTCAA
chr9	7129414	7129415	chr9:7129415:C:G	rs7022136	C	G	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	7165945	7165946	chr9:7165946:A:G	rs10815533	A	G	A	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr9	7209214	7209215	chr9:7209215:A:G	rs7047667	A	G	A	Sox1.mouse_HMG_2	6	1	+	4.398690846007609	2.9585134241389692	CTGAATAGAGTTCAT
chr9	7283983	7283984	chr9:7283984:A:G	rs2820935	A	G	A	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	7289444	7289445	chr9:7289445:A:G	rs10976180	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr9	7315019	7315020	chr9:7315020:T:C	rs7030945	T	C	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr9	7326777	7326778	chr9:7326778:G:C	chr9:7326778:G:C	G	C	G	Sox1.mouse_HMG_2	7	1	-	2.869648096211014	2.5652779973380078	GCTAATTCCATTCAC
chr9	7445626	7445627	chr9:7445627:C:G	rs2997549	C	G	C	Sox1.mouse_HMG_2	2	1	-	3.104433207938976	-2.288183726907461	GTGAACGCCATTTAT
chr9	7912426	7912427	chr9:7912427:C:T	rs10976665	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	7983906	7983907	chr9:7983907:T:G	rs78506714	T	G	T	Sox1.mouse_HMG_2	4	1	-	5.481027187871556	3.0989661200046337	CTGAAGTACAGTCAC
chr9	8226642	8226643	chr9:8226643:A:G	rs10815793	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr9	8232697	8232698	chr9:8232698:T:G	rs10815797	T	G	T	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	8285206	8285207	chr9:8285207:T:A	rs7865119	T	A	A	Sox1.mouse_HMG_2	5	1	+	5.160005978014715	-1.748748801300505	TTGCCTGGCATTCAT
chr9	8338689	8338690	chr9:8338690:G:T	rs3780336	G	T	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr9	8437487	8437488	chr9:8437488:C:T	rs10977105	C	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr9	8494548	8494549	chr9:8494549:C:A	rs34599557	C	A	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr9	8695997	8695998	chr9:8695998:A:G	rs1368982	A	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr9	8734233	8734234	chr9:8734234:C:A	rs115804274	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	8802403	8802404	chr9:8802404:C:T	rs58500396	C	T	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr9	8802429	8802430	chr9:8802430:C:T	rs78825829	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	8847949	8847950	chr9:8847950:C:T	rs72704324	C	T	C	Sox1.mouse_HMG_2	5	1	-	5.620977803071875	5.620977803071875	CTGAAGAGCAGTCAC
chr9	8961551	8961552	chr9:8961552:A:C	rs76184457	A	C	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr9	9418276	9418277	chr9:9418277:C:T	rs1333113	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr9	9437673	9437674	chr9:9437674:C:T	rs1412873	C	T	T	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr9	9537064	9537065	chr9:9537065:T:C	rs16929670	T	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	9913443	9913444	chr9:9913444:C:T	rs72692734	C	T	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	9919287	9919288	chr9:9919288:G:C	rs10978087	G	C	g	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr9	10026755	10026756	chr9:10026756:C:T	rs78494766	C	T	c	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr9	10204490	10204491	chr9:10204491:G:C	rs192354614	G	C	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	10232976	10232977	chr9:10232977:C:G	rs1322140	C	G	G	Sox1.mouse_HMG_2	4	1	+	5.624377651570244	1.1850259502770926	CTCACTGGCATTCAA
chr9	10274022	10274023	chr9:10274023:T:G	rs7851534	T	G	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	10274057	10274058	chr9:10274058:G:T	rs10809055	G	T	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr9	10338319	10338320	chr9:10338320:C:T	rs10756027	C	T	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	10479484	10479485	chr9:10479485:A:T	rs1953595	A	T	T	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	10479526	10479527	chr9:10479527:T:C	rs976831	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr9	10585929	10585930	chr9:10585930:C:A	rs62539613	C	A	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	10727371	10727372	chr9:10727372:G:A	rs16926356	G	A	G	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr9	10827066	10827067	chr9:10827067:G:C	rs10809203	G	C	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr9	10929048	10929049	chr9:10929049:G:C	rs7867318	G	C	G	Sox1.mouse_HMG_2	13	1	-	2.985950070649432	4.360548392006131	CTGACTTGCAGTCCC
chr9	11026983	11026984	chr9:11026984:C:G	rs7853613	C	G	C	Sox1.mouse_HMG_2	12	1	+	2.7305744994361154	-4.169874151030249	ATGTCTCACATTCAG
chr9	11033227	11033228	chr9:11033228:T:C	rs2151663	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr9	11097561	11097562	chr9:11097562:T:C	rs2382262	T	C	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	11537934	11537935	chr9:11537935:T:C	rs1443384	T	C	T	Sox1.mouse_HMG_2	10	1	+	5.945531583110887	-0.9024099951693948	ATGAAAAACATTTAT
chr9	11606347	11606348	chr9:11606348:T:C	rs10511567	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	11962622	11962623	chr9:11962623:T:A	rs73646822	T	A	t	Sox1.mouse_HMG_2	10	1	+	4.745487728367562	-2.1024538499127203	TTGAATAACATTGGT
chr9	12356313	12356314	chr9:12356314:T:G	rs1331351	T	G	G	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr9	12425995	12425996	chr9:12425996:G:A	rs73646198	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr9	12681640	12681641	chr9:12681641:G:C	rs10738288	G	C	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr9	12714215	12714216	chr9:12714216:G:C	rs11829	G	C	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr9	12735864	12735865	chr9:12735865:C:T	rs10756399	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr9	12738641	12738642	chr9:12738642:C:T	rs970945	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	12814794	12814795	chr9:12814795:T:G	rs79695172	T	G	t	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	12956761	12956762	chr9:12956762:G:T	rs3932596	G	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	12980419	12980420	chr9:12980420:T:C	rs71507355	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	13092284	13092285	chr9:13092285:C:T	rs10118379	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr9	13101489	13101490	chr9:13101490:G:T	rs7872073	G	T	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	13333032	13333033	chr9:13333033:C:A	rs2841172	C	A	-	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	13445687	13445688	chr9:13445688:T:G	rs11788316	T	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr9	13708161	13708162	chr9:13708162:G:A	rs594872	G	A	G	Sox1.mouse_HMG_2	2	1	+	3.7908066248493952	-0.8545959081668218	GGGAAGAACATTCAC
chr9	13749917	13749918	chr9:13749918:T:G	rs10756491	T	G	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr9	13749918	13749919	chr9:13749919:G:A	rs73650616	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	13750430	13750431	chr9:13750431:A:G	rs10738340	A	G	A	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr9	13787756	13787757	chr9:13787757:G:C	rs181053411	G	C	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr9	13993660	13993661	chr9:13993661:C:T	rs72715836	C	T	C	Sox1.mouse_HMG_2	8	1	+	10.968505336147503	5.324078645765516	CTGAATTGCATTCTG
chr9	13993673	13993674	chr9:13993674:C:T	rs1885430	C	T	C	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr9	14008544	14008545	chr9:14008545:C:A	rs78694473	C	A	A	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr9	14089528	14089529	chr9:14089529:A:G	rs10961378	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	14296732	14296733	chr9:14296733:C:T	rs10810128	C	T	T	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	14416123	14416124	chr9:14416124:A:C	rs16931734	A	C	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr9	14416159	14416160	chr9:14416160:C:A	rs56236655	C	A	A	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr9	14547634	14547635	chr9:14547635:T:C	rs12002454	T	C	T	Sox1.mouse_HMG_2	13	1	-	8.506746539205075	3.5606288514324262	ACGACTTACATTCAG
chr9	14602817	14602818	chr9:14602818:G:C	rs10961610	G	C	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	14620926	14620927	chr9:14620927:G:C	rs1343572	G	C	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	14652893	14652894	chr9:14652894:A:G	rs115476372	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.79079853984371	-3.0306142293163627	GGCAATTCCATTCAG
chr9	14766626	14766627	chr9:14766627:A:G	rs72614221	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	14783738	14783739	chr9:14783739:T:C	rs59913446	T	C	T	Sox1.mouse_HMG_2	10	1	-	6.331500217868049	10.426844280423232	ATGAATAACAATCTG
chr9	14806903	14806904	chr9:14806904:G:A	rs12683064	G	A	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	14937082	14937083	chr9:14937083:A:G	rs190120116	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	15077805	15077806	chr9:15077806:T:C	rs10810339	T	C	T	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	15077815	15077816	chr9:15077816:T:C	rs10961866	T	C	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr9	15249051	15249052	chr9:15249052:T:C	rs72700653	T	C	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	15622521	15622522	chr9:15622522:G:C	rs7859780	G	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	15783267	15783268	chr9:15783268:C:T	rs4146291	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr9	15882616	15882617	chr9:15882617:T:A	rs9407671	T	A	T	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr9	15882647	15882648	chr9:15882648:A:G	rs2995025	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	16257740	16257741	chr9:16257741:A:G	rs78112129	A	G	A	Sox1.mouse_HMG_2	4	1	+	4.081318736601866	-2.7400940325582064	CTCAATGCCATTTAC
chr9	16318001	16318002	chr9:16318002:A:G	rs7853936	A	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr9	16372417	16372418	chr9:16372418:G:A	rs10962403	G	A	G	Sox1.mouse_HMG_2	6	1	+	2.350629202980756	3.790806624849395	GGGAATGACATGCAC
chr9	16389000	16389001	chr9:16389001:T:C	rs9406639	T	C	C	Sox1.mouse_HMG_2	9	1	-	5.219713645112963	-1.6890411342022573	ATGGCTTTCATTCAA
chr9	16389007	16389008	chr9:16389008:C:T	rs9407771	C	T	C	Sox1.mouse_HMG_2	2	1	-	5.219713645112963	0.5743111120967471	ATGGCTTTCATTCAA
chr9	16522752	16522753	chr9:16522753:T:G	rs139372611	T	G	T	Sox1.mouse_HMG_2	3	1	-	6.7548789279024914	-0.15387585141272908	CTGAAGAACATTCTT
chr9	16671779	16671780	chr9:16671780:T:C	rs74842830	T	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	16872324	16872325	chr9:16872325:G:A	rs11789875	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr9	16986113	16986114	chr9:16986114:C:G	rs7029491	C	G	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr9	17343117	17343118	chr9:17343118:A:G	rs10810766	A	G	A	Sox1.mouse_HMG_2	10	1	-	2.9390767432438927	-3.9088648350363884	ATGAGTATCCTTCAT
chr9	17551304	17551305	chr9:17551305:T:G	rs75261464	T	G	T	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	17636210	17636211	chr9:17636211:A:G	rs2224450	A	G	G	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr9	17636246	17636247	chr9:17636247:C:T	rs12553667	C	T	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	18070883	18070884	chr9:18070884:A:T	rs62548503	A	T	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	18474822	18474823	chr9:18474823:T:C	rs17206601	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr9	18500950	18500951	chr9:18500951:A:G	rs2149875	A	G	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	18579757	18579758	chr9:18579758:T:C	rs116724075	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.724390529915439	-0.9196017775777945	GTGAATTGCATCCTG
chr9	18586121	18586122	chr9:18586122:C:G	rs7468653	C	G	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	18795868	18795869	chr9:18795869:A:T	rs10116545	A	T	A	Sox1.mouse_HMG_2	5	1	-	4.123722364324278	-2.785032414990941	ATGATTATAATTCAC
chr9	18914339	18914340	chr9:18914340:T:C	rs10811062	T	C	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr9	18970357	18970358	chr9:18970358:A:G	rs7872487	A	G	A	Sox1.mouse_HMG_2	10	1	+	4.715819990115179	8.811164052670362	ATAAATAACAATCAA
chr9	18970362	18970363	chr9:18970363:T:G	rs7858792	T	G	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	19162050	19162051	chr9:19162051:T:C	rs61238056	T	C	T	Sox1.mouse_HMG_2	1	1	+	3.588222170580436	-1.0557701369127985	CTAAAGTACATTCAC
chr9	19217510	19217511	chr9:19217511:G:A	rs755491424	G	A	G	Sox1.mouse_HMG_2	12	1	-	2.7074679843833085	-1.965119119284946	GGGAATAGCACTCAA
chr9	19269668	19269669	chr9:19269669:A:C	rs185582748	A	C	-	Sox1.mouse_HMG_2	4	1	+	6.839902690235898	4.457841622368977	TTGAATTTCATTGAG
chr9	19492974	19492975	chr9:19492975:A:G	rs10117909	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.388639609395994	-3.5201151699192264	ATCTATGCCATTCAT
chr9	19989446	19989447	chr9:19989447:A:G	rs7028764	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	19999735	19999736	chr9:19999736:G:A	rs147699963	G	A	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr9	20324849	20324850	chr9:20324850:A:G	rs12341556	A	G	A	Sox1.mouse_HMG_2	6	1	+	16.592054066606575	15.15187664473793	TTGAATAACATTCAT
chr9	20595317	20595318	chr9:20595318:C:G	rs1291635	C	G	g	Sox1.mouse_HMG_2	5	1	-	3.628286960852627	3.628286960852627	ATGAAGACGATTCAC
chr9	20621644	20621645	chr9:20621645:C:T	rs116782392	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr9	20908750	20908751	chr9:20908751:C:G	rs2891152	C	G	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr9	21179010	21179011	chr9:21179011:T:A	rs149075535	T	A	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	21253684	21253685	chr9:21253685:T:G	rs7024738	T	G	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr9	21382372	21382373	chr9:21382373:A:G	rs141316837	A	G	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr9	21506318	21506319	chr9:21506319:A:G	rs4258083	A	G	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr9	21506328	21506329	chr9:21506329:G:A	rs7856413	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr9	21555283	21555284	chr9:21555284:T:C	rs9298816	T	C	C	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr9	21711815	21711816	chr9:21711816:C:G	rs1335501	C	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr9	21751962	21751963	chr9:21751963:A:G	rs1345027	A	G	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr9	22009698	22009699	chr9:22009699:G:C	rs2069418	G	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	22102165	22102166	chr9:22102166:C:T	rs7859727	C	T	T	Sox1.mouse_HMG_2	8	1	+	5.756467543467049	0.11204085308506084	CTGAATGACAGGCAT
chr9	22392359	22392360	chr9:22392360:T:C	rs7024019	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.379018376415327	0.43290068864267844	GGAAATACCATTCAG
chr9	22682877	22682878	chr9:22682878:G:T	rs605204	G	T	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	22792513	22792514	chr9:22792514:C:G	rs1823289	C	G	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr9	23658215	23658216	chr9:23658216:A:C	rs10757443	A	C	A	Sox1.mouse_HMG_2	11	1	-	4.128819280457878	-2.7799354988573417	TTGACTGTCTTTCAC
chr9	23962339	23962340	chr9:23962340:T:C	rs10966151	T	C	T	Sox1.mouse_HMG_2	6	1	-	8.050772214733174	6.610594792864534	CTGACTAGAATTCAC
chr9	24651527	24651528	chr9:24651528:A:G	rs2183997	A	G	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	24912754	24912755	chr9:24912755:C:T	rs7849819	C	T	T	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	25449613	25449614	chr9:25449614:T:G	rs12001757	T	G	T	Sox1.mouse_HMG_2	13	1	-	2.1945099462350486	-4.1262060628942985	ATGAAGAGCACTCAC
chr9	25675895	25675896	chr9:25675896:T:G	rs140031751	T	G	T	Sox1.mouse_HMG_2	11	1	+	3.6052270613295567	-3.3035277179856637	CTGAATATCAATTAC
chr9	25681505	25681506	chr9:25681506:G:T	rs77185193	G	T	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr9	25681524	25681525	chr9:25681525:G:A	rs13290253	G	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	26088764	26088765	chr9:26088765:A:T	rs111642760	A	T	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr9	26457405	26457406	chr9:26457406:A:G	rs7867403	A	G	A	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	26756987	26756988	chr9:26756988:G:T	rs182176887	G	T	G	Sox1.mouse_HMG_2	5	1	-	5.039261150438359	5.039261150438359	CTGAACTACATTCTC
chr9	27095073	27095074	chr9:27095074:C:T	rs2782434	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	27160907	27160908	chr9:27160908:A:G	rs482271	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr9	27367279	27367280	chr9:27367280:A:G	rs1330921	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	27368991	27368992	chr9:27368992:C:T	rs115239107	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	27374093	27374094	chr9:27374094:T:C	rs10120627	T	C	t	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr9	27467764	27467765	chr9:27467765:G:A	rs7873548	G	A	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr9	27483611	27483612	chr9:27483612:T:G	rs12350089	T	G	T	Sox1.mouse_HMG_2	10	1	+	5.048758312264419	2.2961607965393216	TTGAATGACATACTT
chr9	27498072	27498073	chr9:27498073:C:A	rs951310776	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	27931107	27931108	chr9:27931108:C:T	rs77770529	C	T	C	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr9	27997340	27997341	chr9:27997341:C:T	rs1197936	C	T	T	Sox1.mouse_HMG_2	7	1	-	3.973119656377304	4.674174475918382	ATGAATGGCATTATA
chr9	28025178	28025179	chr9:28025179:C:G	rs944648	C	G	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	28141924	28141925	chr9:28141925:T:G	rs4573372	T	G	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	28171929	28171930	chr9:28171930:G:A	rs7030408	G	A	G	Sox1.mouse_HMG_2	14	1	-	4.0434044426430455	4.918016785365782	CTGAACGCCATTCTC
chr9	28582399	28582400	chr9:28582400:T:C	rs1996774	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr9	28603862	28603863	chr9:28603863:T:A	rs72715215	T	A	T	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr9	28619492	28619493	chr9:28619493:A:G	rs10968680	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	28912924	28912925	chr9:28912925:T:C	rs3843928	T	C	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	28921713	28921714	chr9:28921714:C:T	rs4879283	C	T	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	29018855	29018856	chr9:29018856:G:A	rs2210558	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	29127578	29127579	chr9:29127579:C:T	rs1592173	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr9	29266225	29266226	chr9:29266226:T:G	rs12555430	T	G	T	Sox1.mouse_HMG_2	11	1	+	10.61811868677914	3.7093639074639206	ATGAAGAACATTCAT
chr9	29390808	29390809	chr9:29390809:T:G	rs58908949	T	G	G	Sox1.mouse_HMG_2	13	1	-	10.490712660880941	4.169996651751595	ATAAATTCCATTCAG
chr9	29393202	29393203	chr9:29393203:C:T	rs117835806	C	T	C	Sox1.mouse_HMG_2	1	1	+	6.148405088045841	10.792397395539075	ACGACTCACATTCAT
chr9	29393203	29393204	chr9:29393204:G:C	rs113560800	G	C	G	Sox1.mouse_HMG_2	2	1	+	6.148405088045841	0.7557881531994034	ACGACTCACATTCAT
chr9	29773715	29773716	chr9:29773716:C:T	rs10969370	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	29773730	29773731	chr9:29773731:A:G	rs568964873	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	31321466	31321467	chr9:31321467:A:G	rs10970284	A	G	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	31322302	31322303	chr9:31322303:G:A	rs114187042	G	A	G	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr9	32218798	32218799	chr9:32218799:C:G	rs4878489	C	G	G	Sox1.mouse_HMG_2	0	1	+	3.98613058336188	3.6507705564450363	CTAAATAACATGCAA
chr9	32381106	32381107	chr9:32381107:A:G	rs550478468	A	G	A	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr9	32875174	32875175	chr9:32875175:C:A	rs74585469	C	A	C	Sox1.mouse_HMG_2	12	1	+	4.240474636665013	-2.659974013801351	ATAAATATCTTTCAC
chr9	33003020	33003021	chr9:33003021:A:G	rs77969975	A	G	A	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	33244484	33244485	chr9:33244485:T:A	rs706111	T	A	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	33249249	33249250	chr9:33249250:C:T	rs117006972	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr9	33318389	33318390	chr9:33318390:G:A	rs636759	G	A	A	Sox1.mouse_HMG_2	0	1	-	8.67794541766998	8.412002223900545	CTGAACACCATTCAC
chr9	33425386	33425387	chr9:33425387:G:A	rs4878538	G	A	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr9	33619075	33619076	chr9:33619076:G:A	rs34206473	G	A	g	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr9	33687192	33687193	chr9:33687193:A:G	rs79154227	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	33785964	33785965	chr9:33785965:G:A	rs3925857	G	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	33836438	33836439	chr9:33836439:G:T	rs1749270	G	T	G	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr9	34173290	34173291	chr9:34173291:G:A	rs10814076	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	34251944	34251945	chr9:34251945:G:C	rs1049557	G	C	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr9	34251953	34251954	chr9:34251954:G:T	rs3135929	G	T	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	34254804	34254805	chr9:34254805:G:A	rs192262646	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr9	34271382	34271383	chr9:34271383:T:C	rs7868756	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr9	34525049	34525050	chr9:34525050:T:A	rs10758262	T	A	T	Sox1.mouse_HMG_2	3	1	-	5.973542191897072	-0.9352125874181486	TTAACTACCATTCTT
chr9	34572816	34572817	chr9:34572817:C:T	rs1571401	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	34960171	34960172	chr9:34960172:C:T	rs145637357	C	T	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr9	34984977	34984978	chr9:34984978:A:T	rs17293327	A	T	A	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr9	35452838	35452839	chr9:35452839:C:A	rs10972481	C	A	C	Sox1.mouse_HMG_2	7	1	-	4.49021666922945	4.333642314395349	AGGAATGGCAGTCTT
chr9	35495457	35495458	chr9:35495458:T:G	rs570009244	T	G	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	35526607	35526608	chr9:35526608:G:T	rs2115983	G	T	T	Sox1.mouse_HMG_2	2	1	+	7.922990315708933	1.026295984086221	ATGTATTGCATTCAG
chr9	35529196	35529197	chr9:35529197:A:G	rs10758310	A	G	A	Sox1.mouse_HMG_2	14	1	-	4.788820333489419	3.9142079907666822	CAGAATAACAGTTAT
chr9	35982800	35982801	chr9:35982801:A:G	rs10972662	A	G	a	Sox1.mouse_HMG_2	9	1	+	4.258322068412169	-2.650432710903051	ATACATACCATTCAA
chr9	35982823	35982824	chr9:35982824:C:A	rs10972663	C	A	c	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr9	36359643	36359644	chr9:36359644:C:T	rs16933238	C	T	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr9	36407053	36407054	chr9:36407054:G:C	rs78055342	G	C	G	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr9	36881801	36881802	chr9:36881802:C:A	rs62534680	C	A	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr9	36960767	36960768	chr9:36960768:G:T	rs10758418	G	T	T	Sox1.mouse_HMG_2	10	1	+	2.702281399336565	5.454878915061662	CTGACTTCCTGTCAC
chr9	37058137	37058138	chr9:37058138:G:A	rs1999142	G	A	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	37058146	37058147	chr9:37058147:A:C	rs3013742	A	C	C	Sox1.mouse_HMG_2	10	1	-	5.69723221465263	2.9446346989275325	CTGAATTGCATTTGT
chr9	37137984	37137985	chr9:37137985:A:G	rs13300560	A	G	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	37197124	37197125	chr9:37197125:T:C	chr9:37197125:T:C	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.565580453125293	-2.3431743261899283	TTGATTATCATTCTG
chr9	37620429	37620430	chr9:37620430:T:C	rs79734737	T	C	T	Sox1.mouse_HMG_2	0	1	+	4.1632844115523975	4.42922760532183	TTAAATAACATGCAC
chr9	37677015	37677016	chr9:37677016:A:G	rs12115458	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.793621457927667	-1.1151333213875534	ACGAATTGCATTTAC
chr9	37732470	37732471	chr9:37732471:A:T	rs41304744	A	T	A	Sox1.mouse_HMG_2	9	1	+	3.7345951231100583	-3.174159656205162	CTGCATTGCATTTAT
chr9	37747165	37747166	chr9:37747166:G:A	rs2057646	G	A	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	37753762	37753763	chr9:37753763:T:C	rs190347166	T	C	T	Sox1.mouse_HMG_2	4	1	-	5.725341041527026	-1.0960717276330472	CCGAATGGCATTCTG
chr9	37753764	37753765	chr9:37753765:C:G	rs10973523	C	G	C	Sox1.mouse_HMG_2	2	1	-	5.725341041527026	0.332724106680587	CCGAATGGCATTCTG
chr9	37876494	37876495	chr9:37876495:T:C	rs73451233	T	C	T	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	37918221	37918222	chr9:37918222:A:T	rs11790880	A	T	A	Sox1.mouse_HMG_2	4	1	+	3.3201869934400694	-3.5012257757200027	TTGTATCTCATTCAG
chr9	38290696	38290697	chr9:38290697:C:A	rs4878191	C	A	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	38361275	38361276	chr9:38361276:A:T	rs767147940	A	T	A	Sox1.mouse_HMG_2	0	1	+	4.10866944057418	3.173850041086387	ATGAATGCCTTTTAT
chr9	38435045	38435046	chr9:38435046:T:C	rs115778163	T	C	T	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr9	38443794	38443795	chr9:38443795:G:T	rs7034061	G	T	T	Sox1.mouse_HMG_2	8	1	-	5.54069588660753	0.6911990710954313	TTAACTACCAGTCAC
chr9	38443795	38443796	chr9:38443796:G:A	rs7034062	G	A	G	Sox1.mouse_HMG_2	7	1	-	5.54069588660753	5.079751432900424	TTAACTACCAGTCAC
chr9	38652917	38652918	chr9:38652918:C:T	rs10758513	C	T	c	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr9	40906327	40906328	chr9:40906328:C:T	rs751434099	C	T	.	Sox1.mouse_HMG_2	2	1	-	3.512350850784393	-1.1330516822318244	GGGAAAAACATTCAG
chr9	40915062	40915063	chr9:40915063:C:T	rs1473232015	C	T	.	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	40926286	40926287	chr9:40926287:A:G	rs78287725	A	G	.	Sox1.mouse_HMG_2	1	1	-	10.61811868677914	5.9741263792859085	ATGAACAACATTCAT
chr9	40926712	40926713	chr9:40926713:C:T	rs80269136	C	T	.	Sox1.mouse_HMG_2	7	1	+	5.1540466857946	4.693102232087493	ATGTATGCCAGTCAC
chr9	40926734	40926735	chr9:40926735:C:A	rs56022200	C	A	.	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr9	62852474	62852475	chr9:62852475:T:C	rs56320683	T	C	.	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr9	68413027	68413028	chr9:68413028:G:A	rs3004604	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr9	68537107	68537108	chr9:68537108:T:C	rs41312182	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.9589548099262215	1.0128371221535732	CTGAATTCCAGACAT
chr9	68689329	68689330	chr9:68689330:A:T	rs12552784	A	T	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr9	68777959	68777960	chr9:68777960:G:A	rs4623507	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr9	68841656	68841657	chr9:68841657:A:G	rs6560392	A	G	A	Sox1.mouse_HMG_2	0	1	+	4.976315648285358	3.972079415650155	AGGAATAAAAGTCAT
chr9	69099646	69099647	chr9:69099647:G:A	rs34965002	G	A	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr9	69099653	69099654	chr9:69099654:A:G	rs116401773	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr9	69279310	69279311	chr9:69279311:A:C	rs2309417	A	C	C	Sox1.mouse_HMG_2	10	1	-	4.899584024243432	2.146986508518335	ATGAATAAGTTTCAT
chr9	69474828	69474829	chr9:69474829:C:T	rs11138843	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	69616730	69616731	chr9:69616731:T:C	rs10746683	T	C	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	69758429	69758430	chr9:69758430:A:G	rs2297172	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	69892142	69892143	chr9:69892143:G:A	rs4744952	G	A	A	Sox1.mouse_HMG_2	8	1	-	4.330220934708978	-1.314205755673008	TTGAATTACATGCTA
chr9	69898688	69898689	chr9:69898689:C:T	rs10780694	C	T	C	Sox1.mouse_HMG_2	8	1	+	4.180267579899958	-1.4641591104820293	TTAAATATCATCCAT
chr9	69898702	69898703	chr9:69898703:A:G	rs12346281	A	G	A	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	70031234	70031235	chr9:70031235:T:A	rs72709193	T	A	t	Sox1.mouse_HMG_2	1	1	+	6.898165044103248	2.2541727366100144	TTAAATAGCATTCTG
chr9	70128249	70128250	chr9:70128250:C:A	rs2209779	C	A	C	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	70205716	70205717	chr9:70205717:T:C	rs1927091	T	C	t	Sox1.mouse_HMG_2	2	1	-	7.971489602455722	12.616892135471941	ATAAATTACATTCTC
chr9	70391185	70391186	chr9:70391186:C:T	rs73649104	C	T	T	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr9	70406578	70406579	chr9:70406579:A:G	rs3780603	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	70665463	70665464	chr9:70665464:A:G	rs7040454	A	G	A	Sox1.mouse_HMG_2	6	1	+	4.362597763172663	2.922420341304026	ATGAATAACATTGGA
chr9	70697200	70697201	chr9:70697201:T:G	rs4745025	T	G	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	70850691	70850692	chr9:70850692:T:C	rs80237550	T	C	T	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr9	70850701	70850702	chr9:70850702:T:C	rs10780974	T	C	T	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr9	70893776	70893777	chr9:70893777:T:C	rs13287493	T	C	T	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr9	70979347	70979348	chr9:70979348:G:A	rs2909296	G	A	G	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	71315316	71315317	chr9:71315317:C:G	rs11142798	C	G	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	71492181	71492182	chr9:71492182:T:C	rs10123278	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.225501751932704	-1.6832530273825173	ATCTATAACATTCAT
chr9	71609542	71609543	chr9:71609543:C:T	rs762599438	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr9	71812502	71812503	chr9:71812503:C:T	rs1464758	C	T	C	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr9	71854950	71854951	chr9:71854951:G:A	rs117300263	G	A	A	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	71944855	71944856	chr9:71944856:A:G	rs866026179	A	G	A	Sox1.mouse_HMG_2	1	1	-	4.6088477604643865	-0.03514454702884637	ATGACTAACAGGCAC
chr9	72024475	72024476	chr9:72024476:C:A	rs11143072	C	A	c	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr9	72271949	72271950	chr9:72271950:A:C	rs7850819	A	C	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	72271980	72271981	chr9:72271981:T:C	rs7854074	T	C	C	Sox1.mouse_HMG_2	0	1	-	4.917017271915383	3.9127810392801816	ACCAATTTCATTCAC
chr9	72680978	72680979	chr9:72680979:G:A	rs1444834	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr9	72680983	72680984	chr9:72680984:A:G	rs1796980	A	G	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	72827190	72827191	chr9:72827191:A:G	rs12005837	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr9	72987986	72987987	chr9:72987987:A:G	rs7856728	A	G	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	73023059	73023060	chr9:73023060:T:C	rs546190473	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr9	73023060	73023061	chr9:73023061:G:T	rs548142608	G	T	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	73056292	73056293	chr9:73056293:A:G	rs12379775	A	G	A	Sox1.mouse_HMG_2	4	1	+	6.061539375980517	-0.759873393179557	CTGAATAAAAGTCTT
chr9	73090110	73090111	chr9:73090111:C:T	rs72737016	C	T	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr9	73113903	73113904	chr9:73113904:T:C	rs59648689	T	C	T	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	73114316	73114317	chr9:73114317:T:C	rs10869222	T	C	C	Sox1.mouse_HMG_2	9	1	-	9.917063867238065	3.008309087922845	ATGAACAGCATTCAT
chr9	74572863	74572864	chr9:74572864:C:T	rs17612183	C	T	c	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	74782602	74782603	chr9:74782603:T:C	rs12339024	T	C	T	Sox1.mouse_HMG_2	10	1	-	3.1013009027805016	7.196644965335686	CTGAAAAACAATCAT
chr9	74821886	74821887	chr9:74821887:G:A	rs7847471	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	74946798	74946799	chr9:74946799:G:C	rs113259722	G	C	G	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	75457844	75457845	chr9:75457845:T:C	rs4745404	T	C	C	Sox1.mouse_HMG_2	1	1	+	7.6398929652488015	2.995900657755569	ATCACTTCCATTCAC
chr9	75488998	75488999	chr9:75488999:C:A	rs1854131	C	A	C	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr9	75535409	75535410	chr9:75535410:C:A	rs35111263	C	A	C	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr9	75577232	75577233	chr9:75577233:T:C	rs1576841	T	C	T	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr9	75904269	75904270	chr9:75904270:C:A	rs940791353	C	A	C	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	75904288	75904289	chr9:75904289:A:C	rs139523119	A	C	A	Sox1.mouse_HMG_2	10	1	-	5.075873180574824	2.3232756648497266	ATGAATAGAATTAAT
chr9	75930344	75930345	chr9:75930345:C:G	rs62555889	C	G	G	Sox1.mouse_HMG_2	2	1	-	3.671763040494494	-1.7208538943519445	CTGACCAGCATTCTT
chr9	75931472	75931473	chr9:75931473:A:G	rs2377426	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr9	75931494	75931495	chr9:75931495:A:G	rs10120870	A	G	A	Sox1.mouse_HMG_2	5	1	-	4.42922760532183	-2.47952717399339	CTAAATAACATACAC
chr9	76024633	76024634	chr9:76024634:A:G	rs12344217	A	G	G	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr9	76027650	76027651	chr9:76027651:A:G	rs12554374	A	G	A	Sox1.mouse_HMG_2	0	1	-	7.353968700441293	7.619911894210725	TTGATTTGCATTCAC
chr9	76228234	76228235	chr9:76228235:C:A	rs883225	C	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	76322984	76322985	chr9:76322985:T:C	rs55903217	T	C	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr9	76322986	76322987	chr9:76322987:C:T	rs55805812	C	T	C	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr9	76610318	76610319	chr9:76610319:C:A	rs10869787	C	A	C	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	77417383	77417384	chr9:77417384:C:A	rs13286867	C	A	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	77857124	77857125	chr9:77857125:A:G	rs75231157	A	G	G	Sox1.mouse_HMG_2	13	1	-	3.6980462092636888	0.5716937532926343	TTGAATTTCACTCTG
chr9	77944013	77944014	chr9:77944014:C:G	rs2031880	C	G	C	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	78289344	78289345	chr9:78289345:A:G	rs10867173	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr9	78289388	78289389	chr9:78289389:A:G	rs10867174	A	G	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	78430740	78430741	chr9:78430741:A:G	rs74962103	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr9	78571465	78571466	chr9:78571466:C:A	rs2938883	C	A	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	78685651	78685652	chr9:78685652:T:C	rs75527234	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	78812053	78812054	chr9:78812054:C:T	rs12682943	C	T	C	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr9	78972990	78972991	chr9:78972991:C:T	rs4878034	C	T	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	79079672	79079673	chr9:79079673:C:A	rs12339614	C	A	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr9	79287066	79287067	chr9:79287067:A:G	rs980164	A	G	A	Sox1.mouse_HMG_2	13	1	+	10.355431053264377	5.409313365491729	GTGAATAAAATTCAA
chr9	79350572	79350573	chr9:79350573:G:A	rs995573	G	A	a	Sox1.mouse_HMG_2	5	1	-	3.926767398887125	10.835522178202345	ATGAACAGCATTTAA
chr9	79384158	79384159	chr9:79384159:C:A	rs12345707	C	A	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr9	79431535	79431536	chr9:79431536:T:C	rs13298282	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr9	79560611	79560612	chr9:79560612:C:T	rs34463974	C	T	T	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr9	79560615	79560616	chr9:79560616:T:C	rs2378421	T	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	79610132	79610133	chr9:79610133:A:G	rs114925854	A	G	A	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	79610137	79610138	chr9:79610138:G:A	rs2807310	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr9	79611122	79611123	chr9:79611123:A:G	rs144239491	A	G	T	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	79918110	79918111	chr9:79918111:T:C	rs267571	T	C	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	79952896	79952897	chr9:79952897:T:C	rs17729057	T	C	T	Sox1.mouse_HMG_2	3	1	-	3.8992159499283283	-3.009538829386892	ACCAATACCATTCTT
chr9	80116410	80116411	chr9:80116411:C:A	rs1576198	C	A	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr9	80519626	80519627	chr9:80519627:C:A	rs1330662619	C	A	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	80629102	80629103	chr9:80629103:G:A	rs12683120	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	80649211	80649212	chr9:80649212:T:C	rs148211119	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.2336428428009265	-2.6751119365142944	GGAAATTGCATTCAG
chr9	80976857	80976858	chr9:80976858:T:C	rs117009555	T	C	T	Sox1.mouse_HMG_2	5	1	+	7.204768056313223	0.29601327699800273	AGGAATAGCATTTAT
chr9	81016336	81016337	chr9:81016337:A:C	rs76263389	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	81035303	81035304	chr9:81035304:A:G	rs72738064	A	G	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	81182469	81182470	chr9:81182470:G:A	rs1288791658	G	A	G	Sox1.mouse_HMG_2	8	1	-	9.076058432496671	3.4316317421146842	ATGAATTGCCTTCAT
chr9	81396195	81396196	chr9:81396196:C:T	rs7866986	C	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr9	81465612	81465613	chr9:81465613:A:C	chr9:81465613:A:C	A	C	A	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	81535768	81535769	chr9:81535769:G:A	rs773946981	G	A	G	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr9	81592404	81592405	chr9:81592405:G:T	rs72747234	G	T	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr9	81592444	81592445	chr9:81592445:G:A	rs6559629	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	81596904	81596905	chr9:81596905:T:C	rs864179	T	C	t	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	81596905	81596906	chr9:81596906:G:A	rs77065384	G	A	G	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr9	82535400	82535401	chr9:82535401:A:C	rs115331456	A	C	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	82560272	82560273	chr9:82560273:C:T	rs138109361	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	82862682	82862683	chr9:82862683:A:G	rs927354	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	83166793	83166794	chr9:83166794:G:T	rs11139936	G	T	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr9	83424202	83424203	chr9:83424203:G:A	rs11140077	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr9	83454321	83454322	chr9:83454322:C:T	rs4877767	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr9	83494208	83494209	chr9:83494209:C:A	rs11140121	C	A	C	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr9	83639445	83639446	chr9:83639446:G:A	rs7866066	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr9	83651227	83651228	chr9:83651228:T:C	rs11140198	T	C	T	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr9	83701988	83701989	chr9:83701989:G:C	rs11140219	G	C	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr9	83701992	83701993	chr9:83701993:T:G	rs77665820	T	G	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr9	84100650	84100651	chr9:84100651:T:C	rs7853970	T	C	C	Sox1.mouse_HMG_2	10	1	+	6.930408701922042	0.08246712364176167	ATTACTAACATTCAA
chr9	84349740	84349741	chr9:84349741:G:A	rs13298157	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr9	84449190	84449191	chr9:84449191:C:T	rs3895470	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	85163638	85163639	chr9:85163639:G:T	rs760606113	G	T	g	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr9	85274269	85274270	chr9:85274270:G:A	rs73649528	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	85390806	85390807	chr9:85390807:C:T	rs11789279	C	T	T	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr9	85742744	85742745	chr9:85742745:T:G	rs78036978	T	G	.	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr9	85742773	85742774	chr9:85742774:C:T	rs62570657	C	T	.	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr9	85792193	85792194	chr9:85792194:C:G	chr9:85792194:C:G	C	G	.	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr9	86044268	86044269	chr9:86044269:A:C	rs952351356	A	C	A	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr9	86633884	86633885	chr9:86633885:A:G	chr9:86633885:A:G	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr9	86667510	86667511	chr9:86667511:T:A	rs188804512	T	A	T	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	86732298	86732299	chr9:86732299:C:T	rs7864375	C	T	C	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr9	86829809	86829810	chr9:86829810:G:A	rs1028880	G	A	G	Sox1.mouse_HMG_2	2	1	+	5.9589548099262215	1.3135522769100056	CTGGATTCCAGTCAT
chr9	86894528	86894529	chr9:86894529:T:G	rs10780800	T	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	86977182	86977183	chr9:86977183:A:G	rs4878027	A	G	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr9	87055272	87055273	chr9:87055273:T:C	rs4878036	T	C	T	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr9	87138555	87138556	chr9:87138556:A:C	rs277736	A	C	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr9	87187985	87187986	chr9:87187986:C:T	rs277716	C	T	T	Sox1.mouse_HMG_2	14	1	+	7.249800701132058	8.124413043854794	TTAACTGACATTCAC
chr9	87659953	87659954	chr9:87659954:G:A	rs3128471	G	A	a	Sox1.mouse_HMG_2	0	1	+	6.661805005423494	7.666041238058696	GTCAATTACAGTCAC
chr9	87674765	87674766	chr9:87674766:G:A	rs1044456435	G	A	g	Sox1.mouse_HMG_2	14	1	-	3.3941219041813255	4.268734246904062	GGGAAGACCATTCAC
chr9	87686867	87686868	chr9:87686868:T:C	rs143610957	T	C	T	Sox1.mouse_HMG_2	4	1	-	8.9003389003297	2.078926131169627	CTGAATATCAGTCTG
chr9	87875514	87875515	chr9:87875515:C:T	rs59799274	C	T	-	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr9	87886364	87886365	chr9:87886365:G:A	rs61580688	G	A	-	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	88185544	88185545	chr9:88185545:A:G	rs10868726	A	G	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	88211849	88211850	chr9:88211850:A:G	rs2578240	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	88236687	88236688	chr9:88236688:G:C	rs17054000	G	C	G	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr9	88241769	88241770	chr9:88241770:T:C	rs4628339	T	C	C	Sox1.mouse_HMG_2	9	1	-	4.556676678160463	-2.3520781011547585	TTGAATTGCATTTGC
chr9	88579721	88579722	chr9:88579722:C:T	rs77631716	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	88890413	88890414	chr9:88890414:A:G	rs10867129	A	G	G	Sox1.mouse_HMG_2	9	1	+	9.48647642824574	2.5777216489305204	GTAAATTCCATTCAG
chr9	88935632	88935633	chr9:88935633:A:C	chr9:88935633:A:C	A	C	A	Sox1.mouse_HMG_2	9	1	+	5.052158855464744	-1.856595923850477	ATGAATCTCAGTCTA
chr9	89137699	89137700	chr9:89137700:T:C	rs112269322	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.2430421456313345	-2.665712633683885	ATCACTGACATTCTC
chr9	89361470	89361471	chr9:89361471:G:A	rs4877075	G	A	G	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	89490504	89490505	chr9:89490505:T:C	rs9695896	T	C	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	89494329	89494330	chr9:89494330:C:T	rs1039838296	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	89494330	89494331	chr9:89494331:G:A	rs142056280	G	A	G	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr9	89497084	89497085	chr9:89497085:T:C	rs7037220	T	C	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	89525247	89525248	chr9:89525248:G:T	rs868978	G	T	G	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	89647839	89647840	chr9:89647840:C:T	rs75030060	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr9	89688535	89688536	chr9:89688536:C:T	rs4078101	C	T	T	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	89709318	89709319	chr9:89709319:G:A	rs4877000	G	A	G	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	89709360	89709361	chr9:89709361:T:C	rs4877001	T	C	C	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr9	89714328	89714329	chr9:89714329:C:A	rs10797123	C	A	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	89742905	89742906	chr9:89742906:C:T	rs77632117	C	T	C	Sox1.mouse_HMG_2	-15	0	-	0	0	.
chr9	89766952	89766953	chr9:89766953:C:T	rs9330441	C	T	T	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr9	89768901	89768902	chr9:89768902:T:A	rs117899385	T	A	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	89768927	89768928	chr9:89768928:T:C	rs11265934	T	C	C	Sox1.mouse_HMG_2	10	1	+	3.895347791608232	-2.952593786672049	GTGAATAAGTTTCAT
chr9	89792868	89792869	chr9:89792869:C:T	rs9330447	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr9	89842000	89842001	chr9:89842001:A:G	rs910085927	A	G	a	Sox1.mouse_HMG_2	9	1	+	2.851933266923077	-4.056821512392142	CTGATTTCCAGTCTT
chr9	89892215	89892216	chr9:89892216:A:G	rs993193017	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	90079302	90079303	chr9:90079303:A:G	rs75431165	A	G	A	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr9	90095492	90095493	chr9:90095493:C:T	rs149369434	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	90167828	90167829	chr9:90167829:A:C	rs10820972	A	C	C	Sox1.mouse_HMG_2	-20	0	+	0	0	.
chr9	90198741	90198742	chr9:90198742:G:A	rs75519776	G	A	G	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr9	90198747	90198748	chr9:90198748:T:C	rs4090777	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	90309276	90309277	chr9:90309277:G:A	rs1318387	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr9	90677476	90677477	chr9:90677477:C:A	rs7033851	C	A	.	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	90802046	90802047	chr9:90802047:C:T	rs79216110	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	90802624	90802625	chr9:90802625:C:T	rs74755060	C	T	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr9	90910406	90910407	chr9:90910407:C:T	rs1755994	C	T	C	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	90915448	90915449	chr9:90915449:C:T	rs7035017	C	T	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	91045213	91045214	chr9:91045214:A:G	rs10115589	A	G	A	Sox1.mouse_HMG_2	3	1	+	3.3691268676147366	-3.539627911700484	GTCAATGACATTCCT
chr9	91045225	91045226	chr9:91045226:G:A	rs117094759	G	A	G	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	91192637	91192638	chr9:91192638:C:T	rs10991821	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	91500896	91500897	chr9:91500897:A:G	rs115635762	A	G	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr9	91571143	91571144	chr9:91571144:A:G	rs1388966	A	G	G	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	91578187	91578188	chr9:91578188:C:T	rs16907611	C	T	C	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr9	91802832	91802833	chr9:91802833:G:C	rs77075046	G	C	G	Sox1.mouse_HMG_2	8	1	-	2.29165030802869	-3.426884354507018	CTGAATGCCTTTCGC
chr9	91818278	91818279	chr9:91818279:T:G	rs116912684	T	G	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr9	91846037	91846038	chr9:91846038:C:A	rs143987500	C	A	C	Sox1.mouse_HMG_2	14	1	+	6.418022244589222	5.974925222629272	GTGACTAACACTCAC
chr9	91898753	91898754	chr9:91898754:C:A	rs79163830	C	A	C	Sox1.mouse_HMG_2	10	1	-	4.5904838426974175	7.343081358422515	GTGACTAATAGTCAG
chr9	91898757	91898758	chr9:91898758:T:C	rs75611067	T	C	C	Sox1.mouse_HMG_2	6	1	-	4.5904838426974175	3.1503064208287777	GTGACTAATAGTCAG
chr9	92035219	92035220	chr9:92035220:T:C	rs77528906	T	C	t	Sox1.mouse_HMG_2	1	1	+	7.918236224468176	3.2742439169749424	GTGACTACCATTTAG
chr9	92049080	92049081	chr9:92049081:G:C	rs34332001	G	C	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	92247933	92247934	chr9:92247934:T:C	rs4743869	T	C	C	Sox1.mouse_HMG_2	7	1	-	3.5034120198773255	2.8023572003362496	TTCATTAACATTCAC
chr9	92350333	92350334	chr9:92350334:C:T	rs537413166	C	T	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr9	92393851	92393852	chr9:92393852:G:A	rs13294520	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	92563321	92563322	chr9:92563322:T:C	rs111793708	T	C	T	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr9	92563348	92563349	chr9:92563349:A:G	rs7865019	A	G	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr9	92761991	92761992	chr9:92761992:G:C	rs72758525	G	C	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	92978613	92978614	chr9:92978614:G:A	rs10992562	G	A	g	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	93037163	93037164	chr9:93037164:T:C	rs6479447	T	C	C	Sox1.mouse_HMG_2	5	1	+	10.123521189820716	3.214766410505496	CTGACTCACATTCAT
chr9	93797348	93797349	chr9:93797349:G:T	rs144490091	G	T	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr9	93803005	93803006	chr9:93803006:C:T	rs10821226	C	T	C	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr9	93863687	93863688	chr9:93863688:C:G	rs10821240	C	G	C	Sox1.mouse_HMG_2	8	1	+	3.841429120743906	-1.8771055417918006	CTAATTACCATTCAG
chr9	93863692	93863693	chr9:93863693:A:C	rs73651930	A	C	A	Sox1.mouse_HMG_2	13	1	+	3.841429120743906	-2.479286888385441	CTAATTACCATTCAG
chr9	93980378	93980379	chr9:93980379:C:T	rs11792744	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	94151825	94151826	chr9:94151826:G:A	rs12339587	G	A	G	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	94168820	94168821	chr9:94168821:C:A	rs534566061	C	A	C	Sox1.mouse_HMG_2	30	0	-	0	0	.
chr9	94288003	94288004	chr9:94288004:T:C	rs12235386	T	C	T	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr9	94288012	94288013	chr9:94288013:A:G	rs3131906	A	G	G	Sox1.mouse_HMG_2	11	1	-	4.795022795410517	-2.1137319839047026	ATGAATTCCAGTTTC
chr9	94645714	94645715	chr9:94645715:A:G	rs10821376	A	G	A	Sox1.mouse_HMG_2	9	1	+	4.8593289822973205	-2.0494257970178995	TTGATTTACAGTCAA
chr9	94768603	94768604	chr9:94768604:G:C	rs456276	G	C	G	Sox1.mouse_HMG_2	0	1	-	4.491451031879753	4.156091004962909	CAGAATAACAATCAC
chr9	94867655	94867656	chr9:94867656:G:A	rs77014935	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	94908559	94908560	chr9:94908560:T:G	rs72748591	T	G	T	Sox1.mouse_HMG_2	11	1	+	9.316994836464787	2.4082400571495666	TTGACTTTCATTCTT
chr9	94927407	94927408	chr9:94927408:A:G	rs12683896	A	G	G	Sox1.mouse_HMG_2	28	0	-	0	0	.
chr9	94948764	94948765	chr9:94948765:T:C	rs57094217	T	C	T	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr9	95060658	95060659	chr9:95060659:T:C	rs1888944	T	C	T	Sox1.mouse_HMG_2	5	1	+	5.9752020194170035	-0.9335527598982148	CTGAATGGCATTTTC
chr9	95507090	95507091	chr9:95507091:A:C	rs901897093	A	C	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	95640718	95640719	chr9:95640719:A:G	rs12238893	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr9	95819820	95819821	chr9:95819821:A:G	rs60301271	A	G	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	96112477	96112478	chr9:96112478:T:A	rs10819884	T	A	A	Sox1.mouse_HMG_2	9	1	-	5.056244318785921	-1.8525104605293001	CTGAATTTCATACTT
chr9	96123484	96123485	chr9:96123485:A:G	rs4743559	A	G	G	Sox1.mouse_HMG_2	1	1	-	4.850587647255928	0.2065953397626949	GTGTATATCAGTCAG
chr9	96193660	96193661	chr9:96193661:C:T	rs4742877	C	T	T	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	96226218	96226219	chr9:96226219:C:T	rs7875483	C	T	C	Sox1.mouse_HMG_2	4	1	+	3.1242471646666283	-1.3151045366265228	GTCACTCCCATTCAC
chr9	96249994	96249995	chr9:96249995:C:T	rs407179	C	T	T	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr9	96554626	96554627	chr9:96554627:T:C	rs57972280	T	C	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr9	96617836	96617837	chr9:96617837:C:T	rs16911419	C	T	C	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	96617837	96617838	chr9:96617838:T:G	rs7853976	T	G	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr9	97321589	97321590	chr9:97321590:G:A	rs4345679	G	A	G	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	97382144	97382145	chr9:97382145:A:G	rs17331748	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	97621689	97621690	chr9:97621690:T:C	rs140546924	T	C	T	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	97710888	97710889	chr9:97710889:G:A	rs188204262	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr9	97710920	97710921	chr9:97710921:C:T	rs80296531	C	T	C	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	97714843	97714844	chr9:97714844:A:G	rs73484403	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr9	97742757	97742758	chr9:97742758:A:T	rs78447021	A	T	A	Sox1.mouse_HMG_2	0	1	-	3.8956901954766803	4.830509594964472	TTGAAAGACATTCTG
chr9	98206315	98206316	chr9:98206316:T:C	rs7029585	T	C	c	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	98206320	98206321	chr9:98206321:A:G	rs151201302	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	98228297	98228298	chr9:98228298:A:C	rs73488713	A	C	A	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr9	98228570	98228571	chr9:98228571:G:A	rs10818627	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr9	98273834	98273835	chr9:98273835:G:C	rs12350177	G	C	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	98339326	98339327	chr9:98339327:T:C	chr9:98339327:T:C	T	C	T	Sox1.mouse_HMG_2	1	1	+	1.8246536381443175	-2.8193386693489155	CTGTCTGCCAGTCAG
chr9	98339342	98339343	chr9:98339343:A:C	chr9:98339343:A:C	A	C	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr9	98351620	98351621	chr9:98351621:A:T	rs575941	A	T	T	Sox1.mouse_HMG_2	2	1	+	10.248016924473783	7.996725125867288	TTAAATTTCATTCAT
chr9	98363891	98363892	chr9:98363892:C:A	rs117046865	C	A	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr9	98366633	98366634	chr9:98366634:C:T	rs3780428	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr9	98515794	98515795	chr9:98515795:A:C	rs2779564	A	C	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	98515802	98515803	chr9:98515803:A:G	rs12347388	A	G	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	98533069	98533070	chr9:98533070:G:T	rs10521035	G	T	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr9	98550594	98550595	chr9:98550595:G:A	rs4448404	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	98550613	98550614	chr9:98550614:T:C	rs12347864	T	C	T	Sox1.mouse_HMG_2	4	1	-	4.504572562619618	-2.3168402065404536	CTGAATCACACTCAG
chr9	98552108	98552109	chr9:98552109:T:C	rs74822886	T	C	T	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	98697984	98697985	chr9:98697985:G:A	rs337547	G	A	G	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	98866484	98866485	chr9:98866485:T:C	rs551212291	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	98886755	98886756	chr9:98886756:C:T	rs117757615	C	T	C	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	98886792	98886793	chr9:98886793:G:A	rs145762742	G	A	G	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	98901290	98901291	chr9:98901291:G:A	rs117968037	G	A	G	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	98920289	98920290	chr9:98920290:T:G	rs13288865	T	G	T	Sox1.mouse_HMG_2	1	1	+	3.770085822610953	-1.1783776639608559	CTAAATTGCATTGAT
chr9	99269273	99269274	chr9:99269274:T:C	rs328958	T	C	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	99269276	99269277	chr9:99269277:G:A	rs2900576	G	A	G	Sox1.mouse_HMG_2	0	1	+	5.517427300926263	6.521663533561464	GTGACAACCATTCAA
chr9	99421914	99421915	chr9:99421915:G:A	rs10988820	G	A	G	Sox1.mouse_HMG_2	14	1	-	8.91456135700752	9.789173699730254	ATTAATTACATTCAC
chr9	99588537	99588538	chr9:99588538:T:A	rs4743360	T	A	A	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr9	99869952	99869953	chr9:99869953:T:C	rs2416878	T	C	T	Sox1.mouse_HMG_2	5	1	+	4.410732153994389	-2.498022625320831	CTCACTAACATTTAT
chr9	99922760	99922761	chr9:99922761:G:A	rs10121880	G	A	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr9	100030873	100030874	chr9:100030874:C:G	rs1403437149	C	G	C	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr9	100284888	100284889	chr9:100284889:T:C	rs2065997	T	C	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	100301362	100301363	chr9:100301363:G:A	rs10123866	G	A	G	Sox1.mouse_HMG_2	7	1	+	3.7390343437700393	4.440089163311115	CTGAATGGCTTTCTC
chr9	100324785	100324786	chr9:100324786:A:C	rs186131240	A	C	A	Sox1.mouse_HMG_2	-6	0	-	0	0	.
chr9	100411746	100411747	chr9:100411747:A:C	rs7031884	A	C	C	Sox1.mouse_HMG_2	33	0	-	0	0	.
chr9	100411747	100411748	chr9:100411748:G:T	rs145955150	G	T	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr9	100411771	100411772	chr9:100411772:G:A	rs115843335	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.751485381968622	0.10705869158663578	TTGACTACCGTTCAG
chr9	100468673	100468674	chr9:100468674:C:G	rs12684454	C	G	C	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr9	100940112	100940113	chr9:100940113:T:G	rs1330185	T	G	G	Sox1.mouse_HMG_2	19	0	-	0	0	.
chr9	101274644	101274645	chr9:101274645:T:C	rs74856347	T	C	C	Sox1.mouse_HMG_2	5	1	+	3.340324613357275	-3.5684301659579436	AGGAGTTGCATTCAC
chr9	101456017	101456018	chr9:101456018:G:A	rs762779093	G	A	G	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	101924253	101924254	chr9:101924254:A:G	rs823912	A	G	A	Sox1.mouse_HMG_2	7	1	+	5.756467543467047	5.055412723925972	CTGAAGGACAGTCAT
chr9	102232270	102232271	chr9:102232271:A:G	rs10435907	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr9	102353051	102353052	chr9:102353052:T:C	rs7032916	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	102798025	102798026	chr9:102798026:T:C	rs9695601	T	C	T	Sox1.mouse_HMG_2	13	1	-	5.099745665548686	0.15362797777603776	CTGAATAAAATGCAT
chr9	102981792	102981793	chr9:102981793:A:G	rs6479146	A	G	G	Sox1.mouse_HMG_2	4	1	+	5.240373291298539	-1.5810394778615335	TTGAATTTCAGTGAT
chr9	103616320	103616321	chr9:103616321:T:C	rs10820489	T	C	C	Sox1.mouse_HMG_2	5	1	+	6.002386590069045	-0.9063681892461771	CTAAATGGCATTCTC
chr9	103867131	103867132	chr9:103867132:C:A	rs10990964	C	A	A	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr9	104088723	104088724	chr9:104088724:A:G	rs75628585	A	G	a	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr9	104189174	104189175	chr9:104189175:A:G	rs10991149	A	G	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	104189215	104189216	chr9:104189216:C:A	rs10991150	C	A	C	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr9	104231056	104231057	chr9:104231057:A:G	rs1857983	A	G	A	Sox1.mouse_HMG_2	-4	0	-	0	0	.
chr9	104280859	104280860	chr9:104280860:A:G	rs7045622	A	G	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	104655924	104655925	chr9:104655925:T:A	rs114389440	T	A	A	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	104841760	104841761	chr9:104841761:T:C	rs2482419	T	C	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr9	104920840	104920841	chr9:104920841:T:G	rs2472510	T	G	T	Sox1.mouse_HMG_2	-4	0	+	0	0	.
chr9	104922137	104922138	chr9:104922138:T:C	rs10991413	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	105035607	105035608	chr9:105035608:A:G	rs7850052	A	G	A	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	105103950	105103951	chr9:105103951:T:C	rs112773003	T	C	T	Sox1.mouse_HMG_2	1	1	+	14.667103847129207	10.023111539635972	ATGAATTGCATTCAA
chr9	105275435	105275436	chr9:105275436:A:C	rs328012	A	C	C	Sox1.mouse_HMG_2	11	1	-	4.450912506584356	-2.4578422727308644	ATGAACAAAATTCAA
chr9	105291778	105291779	chr9:105291779:G:A	rs327983	G	A	G	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	105609055	105609056	chr9:105609056:A:G	rs2518129	A	G	A	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr9	105978620	105978621	chr9:105978621:T:C	rs28435979	T	C	C	Sox1.mouse_HMG_2	6	1	-	5.839928646784688	4.399751224916048	CTGAATAGTATTTAT
chr9	106020451	106020452	chr9:106020452:A:G	rs12000076	A	G	A	Sox1.mouse_HMG_2	0	1	-	4.773317956668927	5.039261150438359	TTGAAATACATTCTC
chr9	106022255	106022256	chr9:106022256:A:G	rs7028168	A	G	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr9	106601288	106601289	chr9:106601289:C:T	rs10978554	C	T	C	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr9	106602784	106602785	chr9:106602785:G:A	rs6477534	G	A	A	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	106718689	106718690	chr9:106718690:G:A	rs111650405	G	A	G	Sox1.mouse_HMG_2	0	1	-	2.9618656128011542	2.69592241903172	CTGAATGACATGTAC
chr9	106920761	106920762	chr9:106920762:T:C	rs10978674	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr9	107147311	107147312	chr9:107147312:T:A	rs778042544	T	A	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr9	107154518	107154519	chr9:107154519:G:A	rs74649165	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr9	107242653	107242654	chr9:107242654:T:C	rs7867706	T	C	T	Sox1.mouse_HMG_2	7	1	+	7.671426756014604	8.132371209721711	ATAAATCTCATTCAT
chr9	107578855	107578856	chr9:107578856:G:C	rs10759244	G	C	C	Sox1.mouse_HMG_2	2	1	+	4.638631600861091	-0.7539853339853481	CTGAATCACATTTTT
chr9	107620998	107620999	chr9:107620999:G:A	rs7022385	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr9	107636083	107636084	chr9:107636084:T:G	chr9:107636084:T:G	T	G	T	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr9	107657344	107657345	chr9:107657345:A:T	rs10978974	A	T	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr9	107705903	107705904	chr9:107705904:C:G	rs41501947	C	G	C	Sox1.mouse_HMG_2	12	1	+	4.330220934708978	-2.5702277157573854	TTGAATTACATCCTA
chr9	107739412	107739413	chr9:107739413:C:T	rs77692542	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	107866927	107866928	chr9:107866928:A:G	rs76061553	A	G	A	Sox1.mouse_HMG_2	13	1	+	6.932898507261527	1.9867808194888785	CTGAATTTCTTTCAA
chr9	107870592	107870593	chr9:107870593:G:A	rs11794699	G	A	A	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr9	107895355	107895356	chr9:107895356:C:T	rs144409002	C	T	C	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	107905940	107905941	chr9:107905941:C:T	rs12352069	C	T	C	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr9	108053884	108053885	chr9:108053885:G:A	chr9:108053885:G:A	G	A	G	Sox1.mouse_HMG_2	2	1	+	2.643637800831331	-2.001764732184886	ATGATAAACATTCAG
chr9	108143382	108143383	chr9:108143383:G:A	rs567960	G	A	A	Sox1.mouse_HMG_2	8	1	-	5.022124573998592	-0.6223021163833948	ATGAATTTCAGTAAG
chr9	108211762	108211763	chr9:108211763:C:G	rs609982	C	G	G	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr9	108234992	108234993	chr9:108234993:A:C	chr9:108234993:A:C	A	C	A	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr9	108269269	108269270	chr9:108269270:A:G	rs645119	A	G	A	Sox1.mouse_HMG_2	9	1	+	5.120338871578793	-1.7884159077364266	ATGAGTTCCATTCTG
chr9	108408622	108408623	chr9:108408623:A:G	rs17624754	A	G	A	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr9	108538137	108538138	chr9:108538138:A:G	rs75346385	A	G	A	Sox1.mouse_HMG_2	5	1	-	11.167263381137	4.258508601821778	ACGAATTACATTCAC
chr9	108538150	108538151	chr9:108538151:A:T	rs11787890	A	T	G	Sox1.mouse_HMG_2	-8	0	-	0	0	.
chr9	108674305	108674306	chr9:108674306:G:A	rs2417923	G	A	A	Sox1.mouse_HMG_2	14	1	-	4.368135782341092	5.242748125063828	TTGACTTGCAGTTAC
chr9	109278436	109278437	chr9:109278437:C:T	rs4978791	C	T	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	109340902	109340903	chr9:109340903:C:G	rs7865731	C	G	c	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	109346053	109346054	chr9:109346054:A:G	rs12115792	A	G	A	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	109414463	109414464	chr9:109414464:T:C	rs796795671	T	C	T	Sox1.mouse_HMG_2	11	1	+	5.68778443573456	-1.2209703435806611	CTGAATAAAATTCCT
chr9	109561221	109561222	chr9:109561222:G:A	rs142061434	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	109730180	109730181	chr9:109730181:G:A	rs75081197	G	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	109733586	109733587	chr9:109733587:A:G	rs75331425	A	G	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	109733596	109733597	chr9:109733597:A:T	rs80271008	A	T	A	Sox1.mouse_HMG_2	9	1	+	8.885703793483438	1.9769490141682162	TGGAATGACATTCAA
chr9	109793798	109793799	chr9:109793799:T:A	rs12376776	T	A	A	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	109815351	109815352	chr9:109815352:G:A	rs10980065	G	A	G	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr9	109857595	109857596	chr9:109857596:C:A	rs186999452	C	A	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	109972164	109972165	chr9:109972165:T:C	rs4978864	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	110084252	110084253	chr9:110084253:C:T	rs7865721	C	T	C	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	110202644	110202645	chr9:110202645:C:T	rs12683251	C	T	C	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	110202654	110202655	chr9:110202655:T:G	rs10816941	T	G	G	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr9	110277008	110277009	chr9:110277009:A:G	rs7027903	A	G	A	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr9	110446243	110446244	chr9:110446244:G:A	rs9792495	G	A	G	Sox1.mouse_HMG_2	7	1	+	3.6508910159835715	4.3519458355246465	AGGAAAAGCATTCAA
chr9	110486485	110486486	chr9:110486486:C:T	rs62569941	C	T	C	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	110521233	110521234	chr9:110521234:G:A	rs72750769	G	A	G	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	110742769	110742770	chr9:110742770:A:G	rs547213732	A	G	a	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	110768777	110768778	chr9:110768778:G:C	rs2821147	G	C	G	Sox1.mouse_HMG_2	12	1	-	6.149591109309383	-0.7508575411569813	TAAAATAACATTCAG
chr9	110811901	110811902	chr9:110811902:G:A	rs56082112	G	A	A	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	110842573	110842574	chr9:110842574:C:T	rs67255424	C	T	C	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	110936624	110936625	chr9:110936625:A:C	rs3780523	A	C	A	Sox1.mouse_HMG_2	6	1	-	3.326076288289797	2.726904301162553	ATGTCTTACATTCTC
chr9	111013390	111013391	chr9:111013391:T:C	rs10759481	T	C	C	Sox1.mouse_HMG_2	7	1	-	4.070639037194547	3.3695842176534714	ATTAATTAGATTCAT
chr9	111161442	111161443	chr9:111161443:A:G	rs12350763	A	G	A	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr9	111412134	111412135	chr9:111412135:T:C	rs2418163	T	C	C	Sox1.mouse_HMG_2	7	1	-	6.556117935220213	5.855063115679139	ATGAATAACAGTAAA
chr9	111484744	111484745	chr9:111484745:T:C	rs147379933	T	C	T	Sox1.mouse_HMG_2	24	0	-	0	0	.
chr9	111516212	111516213	chr9:111516213:G:A	rs56396872	G	A	A	Sox1.mouse_HMG_2	-5	0	+	0	0	.
chr9	111600550	111600551	chr9:111600551:G:A	rs7035109	G	A	A	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr9	111620154	111620155	chr9:111620155:T:G	rs10817196	T	G	G	Sox1.mouse_HMG_2	1	1	+	6.149903393589915	1.201439907018106	ATGTATTACAGTCAC
chr9	111620163	111620164	chr9:111620164:G:A	rs10817197	G	A	A	Sox1.mouse_HMG_2	10	1	+	6.149903393589915	2.0545593310347297	ATGTATTACAGTCAC
chr9	111637722	111637723	chr9:111637723:A:G	rs1885503	A	G	A	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr9	111731541	111731542	chr9:111731542:T:A	rs12352855	T	A	T	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	111898023	111898024	chr9:111898024:G:T	rs139622009	G	T	G	Sox1.mouse_HMG_2	27	0	+	0	0	.
chr9	111928132	111928133	chr9:111928133:T:C	rs3739701	T	C	T	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr9	112044338	112044339	chr9:112044339:G:A	rs7850489	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr9	112050309	112050310	chr9:112050310:T:C	rs184736402	T	C	T	Sox1.mouse_HMG_2	1	1	+	2.890214564530746	-1.753777742962487	ATGGCTGACAGTCAG
chr9	112059877	112059878	chr9:112059878:T:C	rs79461840	T	C	T	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr9	112063760	112063761	chr9:112063761:C:T	rs116549520	C	T	C	Sox1.mouse_HMG_2	29	0	+	0	0	.
chr9	112341391	112341392	chr9:112341392:G:C	rs4979104	G	C	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	112756288	112756289	chr9:112756289:T:C	chr9:112756289:T:C	T	C	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	112844448	112844449	chr9:112844449:G:A	rs10981526	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr9	113206096	113206097	chr9:113206097:C:T	rs4333682	C	T	C	Sox1.mouse_HMG_2	16	0	-	0	0	.
chr9	113219263	113219264	chr9:113219264:T:C	chr9:113219264:T:C	T	C	T	Sox1.mouse_HMG_2	7	1	+	8.825670112916177	9.286614566623284	TTGAATATCCTTCAT
chr9	113315348	113315349	chr9:113315349:T:C	rs7864788	T	C	C	Sox1.mouse_HMG_2	3	1	-	2.1644341059605465	-4.7443206733546734	GTGACTGACAGCCAC
chr9	113346814	113346815	chr9:113346815:T:C	rs4437724	T	C	C	Sox1.mouse_HMG_2	4	1	-	3.311176622038416	-3.510236147121655	CAGAATTACTTTCAG
chr9	113383170	113383171	chr9:113383171:A:G	rs7024577	A	G	A	Sox1.mouse_HMG_2	-17	0	-	0	0	.
chr9	113417084	113417085	chr9:113417085:G:A	rs112998569	G	A	G	Sox1.mouse_HMG_2	23	0	-	0	0	.
chr9	113523148	113523149	chr9:113523149:T:C	rs7037441	T	C	T	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	113586928	113586929	chr9:113586929:G:C	rs10981834	G	C	G	Sox1.mouse_HMG_2	25	0	-	0	0	.
chr9	113590201	113590202	chr9:113590202:C:T	chr9:113590202:C:T	C	T	C	Sox1.mouse_HMG_2	12	1	+	4.381098019457716	-0.2914890842105381	GTGACTTAAATTCTC
chr9	113590202	113590203	chr9:113590203:T:C	rs72763848	T	C	T	Sox1.mouse_HMG_2	13	1	+	4.381098019457716	1.2547455634866618	GTGACTTAAATTCTC
chr9	113681440	113681441	chr9:113681441:C:T	rs9644931	C	T	T	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr9	113952809	113952810	chr9:113952810:C:T	rs1571578	C	T	C	Sox1.mouse_HMG_2	19	0	+	0	0	.
chr9	113955491	113955492	chr9:113955492:A:C	rs16936489	A	C	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	114010762	114010763	chr9:114010763:T:C	rs115597503	T	C	T	Sox1.mouse_HMG_2	24	0	+	0	0	.
chr9	114030941	114030942	chr9:114030942:A:G	rs139975709	A	G	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	114088636	114088637	chr9:114088637:T:A	rs9697138	T	A	T	Sox1.mouse_HMG_2	10	1	+	4.054809107275397	-2.793132471004885	GGGAATTTCATTCGC
chr9	114140820	114140821	chr9:114140821:A:G	rs2761685	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr9	114247440	114247441	chr9:114247441:C:T	rs1249712	C	T	C	Sox1.mouse_HMG_2	-3	0	+	0	0	.
chr9	114273042	114273043	chr9:114273043:A:T	rs12115691	A	T	A	Sox1.mouse_HMG_2	31	0	-	0	0	.
chr9	114630088	114630089	chr9:114630089:T:C	rs78049219	T	C	T	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr9	114653831	114653832	chr9:114653832:T:C	rs10982358	T	C	T	Sox1.mouse_HMG_2	10	1	+	10.048117746291211	3.2001761680109295	CTGAATGTCATTCTA
chr9	114736191	114736192	chr9:114736192:A:G	rs72754566	A	G	A	Sox1.mouse_HMG_2	7	1	+	16.209164101411673	15.5081092818706	ATGAATAACATTCAA
chr9	114804732	114804733	chr9:114804733:C:T	rs4979462	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr9	114804738	114804739	chr9:114804739:C:T	rs374133073	C	T	c	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr9	114804740	114804741	chr9:114804741:C:T	rs56253592	C	T	C	Sox1.mouse_HMG_2	-7	0	+	0	0	.
chr9	114936886	114936887	chr9:114936887:A:G	rs181105215	A	G	A	Sox1.mouse_HMG_2	10	1	-	5.131710719021531	-1.7162308592587499	ATAGATTACATTCAT
chr9	115255820	115255821	chr9:115255821:T:C	rs10982634	T	C	T	Sox1.mouse_HMG_2	1	1	+	5.837684319532254	1.1936920120390209	ATGACTGACATTTTT
chr9	115394373	115394374	chr9:115394374:G:C	chr9:115394374:G:C	G	C	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr9	115445464	115445465	chr9:115445465:G:C	rs2078713	G	C	G	Sox1.mouse_HMG_2	34	0	+	0	0	.
chr9	115517371	115517372	chr9:115517372:C:T	rs72755374	C	T	C	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	115549055	115549056	chr9:115549056:A:G	rs10982791	A	G	A	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	115549082	115549083	chr9:115549083:C:T	rs7026805	C	T	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	115650064	115650065	chr9:115650065:C:T	rs115081116	C	T	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	115752860	115752861	chr9:115752861:G:A	rs10982906	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr9	116057738	116057739	chr9:116057739:A:G	rs1314017	A	G	A	Sox1.mouse_HMG_2	4	1	-	7.947573910382965	12.386925611676117	ATGATTGACATTCAA
chr9	116099820	116099821	chr9:116099821:G:A	rs6415825	G	A	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	116181959	116181960	chr9:116181960:C:T	rs1160248	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	116191310	116191311	chr9:116191311:A:G	rs1057379084	A	G	A	Sox1.mouse_HMG_2	5	1	-	2.8307576057531	-4.07799717356212	CTGACTTGCATGCTT
chr9	116279252	116279253	chr9:116279253:G:A	rs12376192	G	A	G	Sox1.mouse_HMG_2	32	0	+	0	0	.
chr9	116366295	116366296	chr9:116366296:A:G	rs7390972	A	G	A	Sox1.mouse_HMG_2	9	1	+	11.946684945226826	5.037930165911606	CTGAATTACAGTCAA
chr9	116572010	116572011	chr9:116572011:C:T	rs61654164	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	116720472	116720473	chr9:116720473:C:T	rs116763496	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr9	117076164	117076165	chr9:117076165:T:G	rs12344337	T	G	T	Sox1.mouse_HMG_2	13	1	+	4.028760628788445	2.2770064941740897	GTGAATTCCATGCTG
chr9	117095289	117095290	chr9:117095290:G:A	rs11791251	G	A	G	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr9	117120351	117120352	chr9:117120352:G:A	rs62562240	G	A	G	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr9	117170604	117170605	chr9:117170605:A:G	rs10818006	A	G	A	Sox1.mouse_HMG_2	5	1	-	3.523042793046262	-3.3857119862689586	TTAAATAGCACTCAC
chr9	117384145	117384146	chr9:117384146:C:G	rs7853500	C	G	G	Sox1.mouse_HMG_2	10	1	-	5.536190584203986	1.4408465216488024	ATGATTTGCAGTCAC
chr9	117492831	117492832	chr9:117492832:T:C	rs1337214	T	C	T	Sox1.mouse_HMG_2	13	1	-	4.653297550421011	-0.2928201373516369	TTGAATTGAATTTAC
chr9	117566201	117566202	chr9:117566202:A:G	rs16905826	A	G	A	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr9	118232794	118232795	chr9:118232795:C:T	rs75127749	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	118336536	118336537	chr9:118336537:G:A	rs7875397	G	A	G	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr9	118594554	118594555	chr9:118594555:C:T	rs7855628	C	T	C	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	119198472	119198473	chr9:119198473:T:C	rs7030047	T	C	T	Sox1.mouse_HMG_2	26	0	+	0	0	.
chr9	119220730	119220731	chr9:119220731:T:C	rs7855641	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	119274099	119274100	chr9:119274100:T:C	rs9886888	T	C	T	Sox1.mouse_HMG_2	-5	0	-	0	0	.
chr9	119644033	119644034	chr9:119644034:G:A	rs915031225	G	A	G	Sox1.mouse_HMG_2	8	1	-	5.7082168216311056	0.06379013124911864	GTGAATAACAGGCAG
chr9	120441610	120441611	chr9:120441611:C:A	rs74344951	C	A	C	Sox1.mouse_HMG_2	14	1	-	3.5678161750813384	4.720884291869077	GTGAATTTCTTTCTG
chr9	120540573	120540574	chr9:120540574:T:C	rs7875141	T	C	T	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr9	120711106	120711107	chr9:120711107:C:T	rs7023812	C	T	T	Sox1.mouse_HMG_2	0	1	+	5.085329425716847	4.819386231947415	CTGAATTGGATTCTA
chr9	120711137	120711138	chr9:120711138:G:A	rs10984992	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	120711771	120711772	chr9:120711772:T:C	rs10760113	T	C	T	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	120883456	120883457	chr9:120883457:T:C	rs73541884	T	C	C	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	120897025	120897026	chr9:120897026:T:C	rs1860823	T	C	C	Sox1.mouse_HMG_2	11	1	+	5.376287999947063	-1.5324667793681566	ATGACTTGCTTTCAA
chr9	120897266	120897267	chr9:120897267:C:A	chr9:120897267:C:A	C	A	C	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr9	120925555	120925556	chr9:120925556:G:A	rs1930781	G	A	A	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr9	121058034	121058035	chr9:121058035:G:A	rs72758196	G	A	A	Sox1.mouse_HMG_2	-1	0	-	0	0	.
chr9	121638565	121638566	chr9:121638566:A:G	rs12352132	A	G	A	Sox1.mouse_HMG_2	10	1	-	8.547854027556907	1.6999124492766242	CTGACTCGCATTCAC
chr9	121671695	121671696	chr9:121671696:G:A	rs12000798	G	A	G	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr9	121820168	121820169	chr9:121820169:A:G	rs3923146	A	G	A	Sox1.mouse_HMG_2	29	0	-	0	0	.
chr9	121825414	121825415	chr9:121825415:G:A	rs142122697	G	A	G	Sox1.mouse_HMG_2	22	0	-	0	0	.
chr9	121862743	121862744	chr9:121862744:G:T	rs4538956	G	T	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	121881647	121881648	chr9:121881648:C:T	rs79423330	C	T	C	Sox1.mouse_HMG_2	-19	0	+	0	0	.
chr9	121902364	121902365	chr9:121902365:T:A	rs10985440	T	A	T	Sox1.mouse_HMG_2	1	1	+	4.642528065423345	-0.00146424206988921	TTGAATAAAAGTCTG
chr9	121999761	121999762	chr9:121999762:G:T	rs60886230	G	T	G	Sox1.mouse_HMG_2	12	1	-	4.013174919920298	-2.887273730546065	TTGAATCACATGCAA
chr9	122016222	122016223	chr9:122016223:G:A	rs16911271	G	A	A	Sox1.mouse_HMG_2	9	1	-	2.5359557174988607	2.5359557174988607	CTGACTGCCCTTCTT
chr9	122126454	122126455	chr9:122126455:C:T	rs771723498	C	T	C	Sox1.mouse_HMG_2	1	1	+	3.5443335183893874	8.188325825882622	GCGACTGACATTCTA
chr9	122126486	122126487	chr9:122126487:A:T	rs117081621	A	T	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	122248643	122248644	chr9:122248644:A:G	rs10985577	A	G	A	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr9	122289473	122289474	chr9:122289474:A:T	rs73557007	A	T	A	Sox1.mouse_HMG_2	-16	0	+	0	0	.
chr9	122838746	122838747	chr9:122838747:A:T	rs3923435	A	T	A	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	123111636	123111637	chr9:123111637:G:A	rs147291680	G	A	G	Sox1.mouse_HMG_2	0	1	+	2.062551273546715	3.0667875061819165	GTGACTTGCTGTCAC
chr9	123383282	123383283	chr9:123383283:G:T	rs149883994	G	T	G	Sox1.mouse_HMG_2	28	0	+	0	0	.
chr9	123421873	123421874	chr9:123421874:C:G	rs7044611	C	G	C	Sox1.mouse_HMG_2	-3	0	-	0	0	.
chr9	123506022	123506023	chr9:123506023:T:C	rs2772206	T	C	C	Sox1.mouse_HMG_2	4	1	+	2.2210387553552575	6.660390456648408	ATGATAAGCATTCAC
chr9	124034124	124034125	chr9:124034125:T:C	rs1555972	T	C	T	Sox1.mouse_HMG_2	9	1	-	4.394762474227311	-2.513992305087909	CTGTCTGTCATTCAC
chr9	124100538	124100539	chr9:124100539:G:A	rs12340124	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr9	124343330	124343331	chr9:124343331:A:G	rs35258638	A	G	G	Sox1.mouse_HMG_2	-10	0	+	0	0	.
chr9	124459144	124459145	chr9:124459145:C:T	rs4838179	C	T	T	Sox1.mouse_HMG_2	7	1	-	5.5646488645497	6.265703684090775	ATGAAGCGCATTCAT
chr9	125613126	125613127	chr9:125613127:T:C	rs12346310	T	C	T	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	125649574	125649575	chr9:125649575:G:A	rs513568	G	A	A	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr9	125752186	125752187	chr9:125752187:T:A	rs10986876	T	A	T	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr9	125842559	125842560	chr9:125842560:G:A	rs12339544	G	A	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	125906435	125906436	chr9:125906436:A:G	rs10987017	A	G	A	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr9	125992024	125992025	chr9:125992025:A:G	rs72752699	A	G	A	Sox1.mouse_HMG_2	10	1	-	2.818081689837426	-4.029859888442854	CTGACCCCCATTCAT
chr9	126117654	126117655	chr9:126117655:A:G	rs4595229	A	G	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	126128735	126128736	chr9:126128736:C:T	rs10760414	C	T	C	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	126203565	126203566	chr9:126203566:C:T	chr9:126203566:C:T	C	T	C	Sox1.mouse_HMG_2	-16	0	-	0	0	.
chr9	126252318	126252319	chr9:126252319:G:A	rs139683981	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr9	126320655	126320656	chr9:126320656:C:T	rs12552388	C	T	C	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr9	126806568	126806569	chr9:126806569:A:T	rs73668417	A	T	A	Sox1.mouse_HMG_2	17	0	-	0	0	.
chr9	126806604	126806605	chr9:126806605:T:A	rs112759044	T	A	A	Sox1.mouse_HMG_2	-19	0	-	0	0	.
chr9	126852571	126852572	chr9:126852572:G:A	rs10819240	G	A	G	Sox1.mouse_HMG_2	4	1	-	3.2725236431862945	-1.166828058106856	CTGACTTGCTGTCAT
chr9	126854973	126854974	chr9:126854974:C:T	rs1463810	C	T	T	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	127074331	127074332	chr9:127074332:A:C	rs1766231	A	C	C	Sox1.mouse_HMG_2	1	1	-	6.013209933342285	1.0647464467704775	ATAAATAGAATTCAA
chr9	127897559	127897560	chr9:127897560:A:C	chr9:127897560:A:C	A	C	A	Sox1.mouse_HMG_2	3	1	+	3.3407914826131	-3.567963296702122	CTCACTGCCAGTCAG
chr9	128082464	128082465	chr9:128082465:C:T	rs7036499	C	T	C	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	128205988	128205989	chr9:128205989:T:A	rs3003603	T	A	T	Sox1.mouse_HMG_2	-18	0	+	0	0	.
chr9	128255562	128255563	chr9:128255563:A:G	rs149522441	A	G	a	Sox1.mouse_HMG_2	1	1	-	5.17642314099666	0.5324308335034256	CTGACTTCCATCCAG
chr9	128370478	128370479	chr9:128370479:T:C	rs7019382	T	C	T	Sox1.mouse_HMG_2	21	0	-	0	0	.
chr9	128407248	128407249	chr9:128407249:T:C	rs12351561	T	C	T	Sox1.mouse_HMG_2	9	1	-	5.682068548821211	-1.22668623049401	GTGACCACCATTCAG
chr9	128635909	128635910	chr9:128635910:G:A	rs117258756	G	A	G	Sox1.mouse_HMG_2	-11	0	-	0	0	.
chr9	129289018	129289019	chr9:129289019:A:G	rs10988301	A	G	A	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	129294038	129294039	chr9:129294039:C:T	rs10819490	C	T	T	Sox1.mouse_HMG_2	8	1	+	5.6891528212699	0.04472613088791383	CTGAGTAACATTCTG
chr9	129411733	129411734	chr9:129411734:C:T	rs28361686	C	T	C	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	129417949	129417950	chr9:129417950:T:C	rs4837365	T	C	C	Sox1.mouse_HMG_2	1	1	+	5.5760314330948555	0.932039125601623	ATAGATACCATTCAT
chr9	129466283	129466284	chr9:129466284:A:G	rs1147359	A	G	A	Sox1.mouse_HMG_2	17	0	+	0	0	.
chr9	129537950	129537951	chr9:129537951:T:C	rs35265276	T	C	T	Sox1.mouse_HMG_2	-9	0	-	0	0	.
chr9	129777899	129777900	chr9:129777900:A:T	rs7020199	A	T	T	Sox1.mouse_HMG_2	9	1	+	9.275676151734944	2.3669213724197204	GTGACTTCCAGTCAC
chr9	130020159	130020160	chr9:130020160:G:A	rs12001851	G	A	G	Sox1.mouse_HMG_2	-13	0	-	0	0	.
chr9	130096903	130096904	chr9:130096904:T:G	rs10988591	T	G	T	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	130245180	130245181	chr9:130245181:G:T	rs7862226	G	T	G	Sox1.mouse_HMG_2	-2	0	-	0	0	.
chr9	130351194	130351195	chr9:130351195:A:G	rs914977	A	G	G	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	130396513	130396514	chr9:130396514:G:A	rs74485877	G	A	G	Sox1.mouse_HMG_2	27	0	-	0	0	.
chr9	130741228	130741229	chr9:130741229:G:A	rs2789767	G	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	130913077	130913078	chr9:130913078:G:C	rs6597653	G	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	130913086	130913087	chr9:130913087:A:G	rs10901301	A	G	A	Sox1.mouse_HMG_2	3	1	+	6.500996181825566	-0.4077585974896526	TTTAATAACATTCTT
chr9	130921306	130921307	chr9:130921307:T:C	rs6597655	T	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	130935856	130935857	chr9:130935857:A:G	rs7865030	A	G	G	Sox1.mouse_HMG_2	10	1	-	4.782285428198499	-2.0656561500817827	ACGACTAAGATTCAT
chr9	131253963	131253964	chr9:131253964:T:G	rs151301928	T	G	T	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	131299451	131299452	chr9:131299452:G:A	rs567232	G	A	G	Sox1.mouse_HMG_2	-11	0	+	0	0	.
chr9	131299493	131299494	chr9:131299494:C:T	rs567840	C	T	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	131405355	131405356	chr9:131405356:C:T	rs111972297	C	T	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr9	131517912	131517913	chr9:131517913:G:A	rs72757656	G	A	G	Sox1.mouse_HMG_2	15	0	-	0	0	.
chr9	131585841	131585842	chr9:131585842:G:C	rs80299620	G	C	G	Sox1.mouse_HMG_2	32	0	-	0	0	.
chr9	131620581	131620582	chr9:131620582:C:T	rs2282009	C	T	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	131733911	131733912	chr9:131733912:G:A	rs182792984	G	A	G	Sox1.mouse_HMG_2	18	0	+	0	0	.
chr9	131759178	131759179	chr9:131759179:A:C	rs2987410	A	C	C	Sox1.mouse_HMG_2	-12	0	-	0	0	.
chr9	131910930	131910931	chr9:131910931:T:C	rs79791864	T	C	T	Sox1.mouse_HMG_2	34	0	-	0	0	.
chr9	132298896	132298897	chr9:132298897:T:C	rs10793913	T	C	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr9	132732670	132732671	chr9:132732671:G:A	rs17149697	G	A	G	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr9	132732690	132732691	chr9:132732691:C:T	rs78645464	C	T	C	Sox1.mouse_HMG_2	0	1	-	3.846271949146341	4.850508181781541	GTGAACTTCATTCTC
chr9	132771633	132771634	chr9:132771634:C:A	rs10901212	C	A	a	Sox1.mouse_HMG_2	20	0	-	0	0	.
chr9	132894727	132894728	chr9:132894728:C:T	rs739441	C	T	T	Sox1.mouse_HMG_2	14	1	+	4.733209585736607	5.607821928459344	AAGACTTTCATTCTC
chr9	132894746	132894747	chr9:132894747:G:A	rs739442	G	A	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	133250328	133250329	chr9:133250329:C:G	rs9411474	C	G	c	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	133269460	133269461	chr9:133269461:T:C	rs1040219554	T	C	N	Sox1.mouse_HMG_2	22	0	+	0	0	.
chr9	133272226	133272227	chr9:133272227:T:C	rs967002727	T	C	t	Sox1.mouse_HMG_2	14	1	+	4.242116491173508	3.367504148450772	CTGAAAATAATTCAT
chr9	133306451	133306452	chr9:133306452:T:C	rs554710	T	C	N	Sox1.mouse_HMG_2	1	1	+	6.329491257784398	1.685498950291164	CTGACTTCCCTTCAT
chr9	133437562	133437563	chr9:133437563:T:C	rs3780809	T	C	T	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	133528374	133528375	chr9:133528375:G:A	rs66938753	G	A	G	Sox1.mouse_HMG_2	21	0	+	0	0	.
chr9	133735548	133735549	chr9:133735549:C:A	rs76433882	C	A	c	Sox1.mouse_HMG_2	18	0	-	0	0	.
chr9	133765628	133765629	chr9:133765629:C:T	rs591866	C	T	T	Sox1.mouse_HMG_2	-10	0	-	0	0	.
chr9	133783323	133783324	chr9:133783324:T:A	rs2428107	T	A	A	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	133816288	133816289	chr9:133816289:T:C	rs62576519	T	C	T	Sox1.mouse_HMG_2	9	1	-	7.680908124977293	0.7721533456620735	TTGAATATCATTAAG
chr9	133849998	133849999	chr9:133849999:T:C	rs1557678	T	C	C	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	133850000	133850001	chr9:133850001:T:C	rs1557679	T	C	C	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	133856304	133856305	chr9:133856305:C:A	rs3819503	C	A	A	Sox1.mouse_HMG_2	-7	0	-	0	0	.
chr9	133907785	133907786	chr9:133907786:C:T	rs79577142	C	T	C	Sox1.mouse_HMG_2	6	1	-	8.934604260936698	10.374781682805338	ATGACTGGCATTCTC
chr9	133907790	133907791	chr9:133907791:A:G	rs61642918	A	G	A	Sox1.mouse_HMG_2	1	1	-	8.934604260936698	4.290611953443464	ATGACTGGCATTCTC
chr9	134094315	134094316	chr9:134094316:C:T	rs2427966	C	T	C	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr9	134208470	134208471	chr9:134208471:C:T	rs4917376	C	T	C	Sox1.mouse_HMG_2	-20	0	-	0	0	.
chr9	134473878	134473879	chr9:134473879:C:T	rs1265797304	C	T	C	Sox1.mouse_HMG_2	30	0	+	0	0	.
chr9	134492588	134492589	chr9:134492589:C:T	rs114830503	C	T	C	Sox1.mouse_HMG_2	-15	0	+	0	0	.
chr9	134492597	134492598	chr9:134492598:T:C	rs59358097	T	C	C	Sox1.mouse_HMG_2	-6	0	+	0	0	.
chr9	134492607	134492608	chr9:134492608:A:G	rs76834559	A	G	A	Sox1.mouse_HMG_2	4	1	+	3.1929476754353496	-3.6284650937247243	CCGCATTCCATTCAC
chr9	134492623	134492624	chr9:134492624:C:A	rs117265520	C	A	C	Sox1.mouse_HMG_2	20	0	+	0	0	.
chr9	134611725	134611726	chr9:134611726:A:C	rs73555141	A	C	A	Sox1.mouse_HMG_2	-13	0	+	0	0	.
chr9	134773598	134773599	chr9:134773599:A:G	rs4842164	A	G	G	Sox1.mouse_HMG_2	-8	0	+	0	0	.
chr9	134787071	134787072	chr9:134787072:G:A	rs55768540	G	A	G	Sox1.mouse_HMG_2	31	0	+	0	0	.
chr9	134984618	134984619	chr9:134984619:G:A	rs28698282	G	A	G	Sox1.mouse_HMG_2	25	0	+	0	0	.
chr9	135180203	135180204	chr9:135180204:G:C	rs2000306	G	C	G	Sox1.mouse_HMG_2	-1	0	+	0	0	.
chr9	135202440	135202441	chr9:135202441:A:G	rs2382857	A	G	G	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	135283740	135283741	chr9:135283741:C:T	rs7874283	C	T	C	Sox1.mouse_HMG_2	-18	0	-	0	0	.
chr9	135324695	135324696	chr9:135324696:G:A	rs11103813	G	A	G	Sox1.mouse_HMG_2	-14	0	+	0	0	.
chr9	135414517	135414518	chr9:135414518:A:G	rs7851809	A	G	G	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr9	135494710	135494711	chr9:135494711:T:C	rs4841990	T	C	C	Sox1.mouse_HMG_2	26	0	-	0	0	.
chr9	135494750	135494751	chr9:135494751:G:A	rs4841991	G	A	G	Sox1.mouse_HMG_2	-14	0	-	0	0	.
chr9	135649145	135649146	chr9:135649146:A:G	rs13293756	A	G	a	Sox1.mouse_HMG_2	15	0	+	0	0	.
chr9	136008992	136008993	chr9:136008993:G:A	rs10858200	G	A	G	Sox1.mouse_HMG_2	-2	0	+	0	0	.
chr9	136246108	136246109	chr9:136246109:A:G	rs782513851	A	G	A	Sox1.mouse_HMG_2	-17	0	+	0	0	.
chr9	136283557	136283558	chr9:136283558:C:T	rs945416731	C	T	T	Sox1.mouse_HMG_2	13	1	+	3.476925503266391	6.603277959237445	ATGAATATGATTCCG
chr9	136287162	136287163	chr9:136287163:G:A	rs879210526	G	A	G	Sox1.mouse_HMG_2	1	1	+	4.410984147093394	4.71545532617197	CGGAATAGTATTCAG
chr9	136287184	136287185	chr9:136287185:T:A	rs879020045	T	A	A	Sox1.mouse_HMG_2	23	0	+	0	0	.
chr9	136565915	136565916	chr9:136565916:T:C	rs973859044	T	C	T	Sox1.mouse_HMG_2	14	1	+	6.278122525515222	5.403510182792486	ATGAATATGATTTAT
chr9	136627648	136627649	chr9:136627649:A:G	rs914737	A	G	A	Sox1.mouse_HMG_2	5	1	-	5.418897991844126	-1.4898567874710946	TTAAATCTCATTCAA
chr9	137441968	137441969	chr9:137441969:G:T	rs61181128	G	T	-	Sox1.mouse_HMG_2	-9	0	+	0	0	.
chr9	137785620	137785621	chr9:137785621:T:C	rs7390131	T	C	T	Sox1.mouse_HMG_2	33	0	+	0	0	.
chr9	137796830	137796831	chr9:137796831:A:G	rs12238423	A	G	G	Sox1.mouse_HMG_2	-12	0	+	0	0	.
chr9	137852238	137852239	chr9:137852239:A:G	rs7390244	A	G	G	Sox1.mouse_HMG_2	16	0	+	0	0	.
chr9	138010005	138010006	chr9:138010006:C:A	rs76062311	C	A	C	Sox1.mouse_HMG_2	-12	0	+	0	0	.