chr1	633031	633032	chr1:633032:T:C	rs377573539	T	C	.	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	633037	633038	chr1:633038:C:T	rs559716105	C	T	.	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	633038	633039	chr1:633039:T:C	rs3905037	T	C	.	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	633070	633071	chr1:633071:C:T	rs78032279	C	T	.	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	1039513	1039514	chr1:1039514:C:T	rs3121578	C	T	c	Msx3.mouse_homeodomain_1	9	1	+	9.514424813467688	10.406513845538935	CCAATTAAACATTTATTA
chr1	1135673	1135674	chr1:1135674:G:T	rs549320756	G	T	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	1144403	1144404	chr1:1144404:G:A	rs114191160	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr1	1153881	1153882	chr1:1153882:A:G	rs4970358	A	G	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr1	1423009	1423010	chr1:1423010:C:T	rs531438893	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	1662591	1662592	chr1:1662592:G:C	rs567609429	G	C	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	1859168	1859169	chr1:1859169:G:A	rs141896837	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	2231663	2231664	chr1:2231664:A:G	rs138776564	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr1	2530399	2530400	chr1:2530400:G:A	rs894939750	G	A	.	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr1	3306665	3306666	chr1:3306666:A:G	rs4648471	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	8.816110278750006	9.663953149630693	GTTTTTAAAATGCAATTA
chr1	3417301	3417302	chr1:3417302:T:C	rs577865981	T	C	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	3819771	3819772	chr1:3819772:T:C	rs9424304	T	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	3819775	3819776	chr1:3819776:C:T	rs9424305	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	4652423	4652424	chr1:4652424:T:C	rs6702210	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	5033625	5033626	chr1:5033626:T:C	rs7533014	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	7.052184506982225	4.535315879045147	GCACTTGCAATGCTATTA
chr1	5036612	5036613	chr1:5036613:T:G	rs72635359	T	G	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr1	5412565	5412566	chr1:5412566:C:A	rs12131421	C	A	C	Msx3.mouse_homeodomain_1	11	1	-	7.940538296417144	6.315773418143698	ACCATCAAATGGCAATCA
chr1	5565505	5565506	chr1:5565506:T:C	rs6673119	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	5599526	5599527	chr1:5599527:G:T	rs950601	G	T	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	5623700	5623701	chr1:5623701:T:C	rs945323	T	C	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr1	5745369	5745370	chr1:5745370:A:C	chr1:5745370:A:C	A	C	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	5896848	5896849	chr1:5896849:C:A	rs12058375	C	A	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr1	6048316	6048317	chr1:6048317:C:A	rs756096	C	A	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	6891596	6891597	chr1:6891597:G:A	rs7533228	G	A	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr1	6922002	6922003	chr1:6922003:A:T	rs76147892	A	T	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr1	6926048	6926049	chr1:6926049:G:A	rs4908574	G	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	6958658	6958659	chr1:6958659:A:G	rs11120797	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	7302931	7302932	chr1:7302932:A:G	rs12410983	A	G	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	7426628	7426629	chr1:7426629:T:C	rs58579511	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	5.7520893453523945	1.1639951263292438	GCCATCAGCCCCCAATCA
chr1	7427688	7427689	chr1:7427689:A:G	rs9661064	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	9.25372973806426	6.811652511132703	GAAATTAAATGTCAATTT
chr1	7444676	7444677	chr1:7444677:G:A	rs12119558	G	A	G	Msx3.mouse_homeodomain_1	1	1	+	7.104933023414877	7.668992503502728	GGAATTAGAGCCAGATTA
chr1	7540193	7540194	chr1:7540194:C:G	rs1193169	C	G	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr1	7963527	7963528	chr1:7963528:C:A	rs161814	C	A	c	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	7963573	7963574	chr1:7963574:C:G	rs161815	C	G	c	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	8046411	8046412	chr1:8046412:G:A	rs17032034	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	9.28273084477772	11.340005023683915	CTACTTATTTTGCGATTA
chr1	8046417	8046418	chr1:8046418:A:G	rs12066989	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr1	8225125	8225126	chr1:8225126:A:C	rs423909	A	C	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	8266837	8266838	chr1:8266838:A:G	rs72635774	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	14.872272791796544	13.980183759725296	CTAATTAAATTGTAATTA
chr1	8370729	8370730	chr1:8370730:G:C	rs72864290	G	C	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	8370751	8370752	chr1:8370752:T:C	rs113121828	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.257608887196053	3.669514668172905	TTGATTAAAGTTCAATTG
chr1	8370780	8370781	chr1:8370781:T:G	rs74049618	T	G	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	8492743	8492744	chr1:8492744:A:T	rs6677736	A	T	a	Msx3.mouse_homeodomain_1	15	1	-	9.731920998515116	3.653007579157259	CTAATTAAATAAAAATTT
chr1	8835483	8835484	chr1:8835484:G:A	rs6699790	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	8938507	8938508	chr1:8938508:G:T	chr1:8938508:G:T	G	T	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr1	8994524	8994525	chr1:8994525:G:A	rs10746482	G	A	G	Msx3.mouse_homeodomain_1	2	1	+	7.4883532710163445	10.005221898953423	CCGATAAACAAGCATTTA
chr1	9338928	9338929	chr1:9338929:G:T	rs72643833	G	T	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	9338972	9338973	chr1:9338973:G:A	rs57837536	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr1	9450364	9450365	chr1:9450365:C:T	rs375947470	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	7.149615619388189	8.156164952233397	GCACTTACGGAGCAATGA
chr1	10611264	10611265	chr1:10611265:C:T	rs77708413	C	T	c	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr1	10754880	10754881	chr1:10754881:C:T	rs205483	C	T	T	Msx3.mouse_homeodomain_1	12	1	-	7.018028748991167	8.0061030078385	GCAATTAAAAGCGACTTT
chr1	11075616	11075617	chr1:11075617:A:G	rs17036291	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	11229103	11229104	chr1:11229104:G:A	rs2076655	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	11342319	11342320	chr1:11342320:C:T	rs80089968	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	11581744	11581745	chr1:11581745:T:A	rs61773880	T	A	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	12096178	12096179	chr1:12096179:A:G	rs11121855	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.744680525923783	4.156586306900635	GCAATCCTGAGCCAATTA
chr1	12406092	12406093	chr1:12406093:C:T	rs141028350	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	12631035	12631036	chr1:12631036:C:G	rs6685741	C	G	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	13230759	13230760	chr1:13230760:A:G	rs1298208437	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr1	13357074	13357075	chr1:13357075:G:A	rs1418009841	G	A	.	Msx3.mouse_homeodomain_1	11	1	-	8.056545233836088	6.346314814852379	ATAATTAAAGGCCAATCT
chr1	13400412	13400413	chr1:13400413:A:G	rs1035804918	A	G	N	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	13468980	13468981	chr1:13468981:T:C	rs3013090	T	C	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr1	13480936	13480937	chr1:13480937:C:T	rs12043047	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr1	13544470	13544471	chr1:13544471:C:T	rs444516	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	13713435	13713436	chr1:13713436:T:C	rs76933461	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	13834258	13834259	chr1:13834259:A:G	rs982510	A	G	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	14013689	14013690	chr1:14013690:C:A	rs17353372	C	A	C	Msx3.mouse_homeodomain_1	5	1	+	8.320203833703859	7.8917875290579795	GTAATCAAACTGAAATTG
chr1	14372286	14372287	chr1:14372287:G:A	rs7517101	G	A	A	Msx3.mouse_homeodomain_1	13	1	-	7.673525033466722	6.375309627104132	GCAATTATAGAGACATTT
chr1	14505422	14505423	chr1:14505423:T:C	rs10754859	T	C	C	Msx3.mouse_homeodomain_1	9	1	+	7.447650552703741	6.555561520632493	ACAATTGTGTGGCAATAA
chr1	14525320	14525321	chr1:14525321:A:G	rs77080357	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	8.634370771058812	9.482213641939499	ATGATAAAAAAGAAATTA
chr1	14738451	14738452	chr1:14738452:C:T	rs10927525	C	T	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	14755768	14755769	chr1:14755769:A:T	rs529844191	A	T	A	Msx3.mouse_homeodomain_1	6	1	+	9.569233642653096	5.976951435540577	GCATTTAGCCTCCAATTA
chr1	14777915	14777916	chr1:14777916:A:T	rs116244379	A	T	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	15016925	15016926	chr1:15016926:C:T	rs36120053	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	10.25673733120346	9.408894460322774	GCATTTAAATAATAATTA
chr1	15149900	15149901	chr1:15149901:G:A	rs7517305	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	15149947	15149948	chr1:15149948:G:A	rs61782689	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	15254630	15254631	chr1:15254631:G:A	rs7532108	G	A	g	Msx3.mouse_homeodomain_1	1	1	-	6.918731197275197	6.070888326394512	GCAGTAAGCAGTCAATTA
chr1	15255131	15255132	chr1:15255132:C:A	rs28590101	C	A	c	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr1	15484850	15484851	chr1:15484851:C:T	rs6675825	C	T	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	15565919	15565920	chr1:15565920:A:C	rs2236215	A	C	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr1	15691780	15691781	chr1:15691781:T:G	rs16851946	T	G	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	15867051	15867052	chr1:15867052:T:G	rs76389011	T	G	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	15867062	15867063	chr1:15867063:G:A	rs143949398	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	16321289	16321290	chr1:16321290:A:G	rs6685060	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	9.194486606195575	10.042329477076262	GTAATTACAGAGGAATTG
chr1	16618731	16618732	chr1:16618732:G:T	rs9728628	G	T	.	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr1	16905336	16905337	chr1:16905337:G:C	rs192979943	G	C	.	Msx3.mouse_homeodomain_1	11	1	+	9.729242812118748	9.814708352829012	GTAATAAGGTAGAAATTA
chr1	16905337	16905338	chr1:16905338:A:G	rs555001932	A	G	.	Msx3.mouse_homeodomain_1	12	1	+	9.729242812118748	8.741168553271418	GTAATAAGGTAGAAATTA
chr1	16905348	16905349	chr1:16905349:A:G	rs900359426	A	G	.	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	16905349	16905350	chr1:16905350:A:G	rs200368996	A	G	.	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	16905350	16905351	chr1:16905351:A:C	rs77384259	A	C	.	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	16905350	16905351	chr1:16905351:A:G	chr1:16905351:A:G	A	G	.	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	17196385	17196386	chr1:17196386:G:C	rs2454182	G	C	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr1	17672393	17672394	chr1:17672394:G:A	rs11582045	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	17672424	17672425	chr1:17672425:G:C	rs17469160	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	17700229	17700230	chr1:17700230:C:T	rs11203441	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	7.222222725472027	8.114311757543277	TTCATTGAACGCCGATTA
chr1	17803194	17803195	chr1:17803195:T:C	rs76087650	T	C	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr1	17803206	17803207	chr1:17803207:C:T	rs111263896	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	17832846	17832847	chr1:17832847:C:T	rs12097284	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr1	17878434	17878435	chr1:17878435:T:C	rs12045917	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	10.010579067618469	8.933987896681995	AAAATTATAAAGCACTTA
chr1	17908196	17908197	chr1:17908197:C:T	rs11203230	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr1	18410496	18410497	chr1:18410497:G:C	rs7512838	G	C	G	Msx3.mouse_homeodomain_1	2	1	+	10.624501088442997	10.75878227490935	ACGATTAAACAGCCATTA
chr1	18510825	18510826	chr1:18510826:G:C	rs9329466	G	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	18607231	18607232	chr1:18607232:G:A	rs754840226	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr1	18655357	18655358	chr1:18655358:A:C	rs114691790	A	C	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	18779237	18779238	chr1:18779238:G:C	rs72650387	G	C	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr1	19021578	19021579	chr1:19021579:T:C	rs6690248	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	19430585	19430586	chr1:19430586:T:C	rs114375611	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	19772615	19772616	chr1:19772616:T:G	rs1266434	T	G	G	Msx3.mouse_homeodomain_1	11	1	+	8.500740247859124	10.12550512613257	TCACTTAGAAGTCGATTA
chr1	19927813	19927814	chr1:19927814:G:A	rs7520018	G	A	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr1	20354846	20354847	chr1:20354847:C:T	rs1368515080	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	21174207	21174208	chr1:21174208:C:A	rs2873424	C	A	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr1	21174601	21174602	chr1:21174602:C:A	rs7512116	C	A	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	21590740	21590741	chr1:21590741:T:C	rs10917021	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr1	21638717	21638718	chr1:21638718:T:G	rs76273240	T	G	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr1	21709762	21709763	chr1:21709763:A:C	rs482791	A	C	t	Msx3.mouse_homeodomain_1	4	1	-	6.488607754715798	0.8306185027660993	CCACTTAAAAGCCAGTCA
chr1	21791724	21791725	chr1:21791725:C:T	rs4654985	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr1	21959567	21959568	chr1:21959568:A:G	rs7539092	A	G	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	22008831	22008832	chr1:22008832:C:A	rs112882511	C	A	.	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	22077951	22077952	chr1:22077952:C:T	rs985608841	C	T	c	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr1	22077960	22077961	chr1:22077961:G:T	rs549836383	G	T	g	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	22324052	22324053	chr1:22324053:C:T	rs16826920	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	22379311	22379312	chr1:22379312:A:T	rs12730673	A	T	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	23175280	23175281	chr1:23175281:T:C	rs2806555	T	C	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	23225612	23225613	chr1:23225613:A:G	rs9787309	A	G	A	Msx3.mouse_homeodomain_1	1	1	+	8.772359197690008	8.20829971760216	CAAATTAAAAGACATTTA
chr1	23297106	23297107	chr1:23297107:T:C	rs79208908	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	23554420	23554421	chr1:23554421:G:A	rs34671368	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	23873151	23873152	chr1:23873152:G:A	rs6663474	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	24010839	24010840	chr1:24010840:A:G	rs375619845	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	7.162406480303695	4.037457326709841	CAACTCAGCTTGCAATTA
chr1	24138214	24138215	chr1:24138215:A:T	rs2502450	A	T	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	24150220	24150221	chr1:24150221:T:A	rs10465895	T	A	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	24190389	24190390	chr1:24190390:G:A	rs11587500	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	24318379	24318380	chr1:24318380:C:A	rs72652521	C	A	C	Msx3.mouse_homeodomain_1	9	1	+	11.972420459135641	13.278650763079973	GCAATTACTCCACAATTA
chr1	24380805	24380806	chr1:24380806:C:T	rs2274167	C	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	24635371	24635372	chr1:24635372:G:A	chr1:24635372:G:A	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	24683729	24683730	chr1:24683730:G:A	rs142145966	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	24888829	24888830	chr1:24888830:G:A	rs140375722	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr1	25145593	25145594	chr1:25145594:T:G	chr1:25145594:T:G	T	G	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr1	25873027	25873028	chr1:25873028:A:G	rs151091610	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	7.855725724842892	6.849176391997683	CCCATTAGATACAAATAA
chr1	26024980	26024981	chr1:26024981:C:T	rs11582191	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	26181801	26181802	chr1:26181802:G:A	rs3819033	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	14.42502933899554	13.60143859473536	CCAATTACTCACCAATTA
chr1	26469759	26469760	chr1:26469760:C:T	rs2494394	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	26474737	26474738	chr1:26474738:C:A	rs72651510	C	A	C	Msx3.mouse_homeodomain_1	11	1	-	6.835266614373082	5.210501736099635	ACAAGAAAAGGGCAATTA
chr1	26531228	26531229	chr1:26531229:G:A	rs186051669	G	A	.	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr1	26711083	26711084	chr1:26711084:A:G	rs12726081	A	G	G	Msx3.mouse_homeodomain_1	7	1	+	6.8996708723154905	5.789855334991896	CCAATTAATGCCCTCTTA
chr1	27695830	27695831	chr1:27695831:C:G	rs2788679	C	G	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	27939475	27939476	chr1:27939476:A:G	rs72656503	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	6.5666732384372795	4.049804610500202	CCAAGTACGGAGAAATTA
chr1	28249349	28249350	chr1:28249350:C:A	rs6688897	C	A	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	28322246	28322247	chr1:28322247:A:C	rs75459246	A	C	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	28353006	28353007	chr1:28353007:T:G	rs74064143	T	G	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	28848487	28848488	chr1:28848488:T:C	rs498952	T	C	T	Msx3.mouse_homeodomain_1	11	1	-	8.638657797208793	9.835608822384206	TTAATTAATGAACAGTTA
chr1	28921274	28921275	chr1:28921275:C:A	rs150085	C	A	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	28966570	28966571	chr1:28966571:T:C	rs2930841	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr1	29646024	29646025	chr1:29646025:T:C	rs748594907	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	29769106	29769107	chr1:29769107:G:A	rs78449065	G	A	.	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	29770144	29770145	chr1:29770145:C:T	rs116535561	C	T	.	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	29806453	29806454	chr1:29806454:A:T	rs10914476	A	T	-	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	29949854	29949855	chr1:29949855:C:T	rs4949524	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	29956095	29956096	chr1:29956096:A:T	rs2015244	A	T	A	Msx3.mouse_homeodomain_1	7	1	-	8.309954173353674	9.369899767342332	GCCCTCATGATCCAATTA
chr1	30246762	30246763	chr1:30246763:T:G	rs77625018	T	G	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	30268180	30268181	chr1:30268181:T:C	rs4949570	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	30268212	30268213	chr1:30268213:A:G	rs4949571	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	7.966025571962864	1.8674798920937312	GGAATTGTGAGTCAATTA
chr1	30345742	30345743	chr1:30345743:A:G	rs74068747	A	G	.	Msx3.mouse_homeodomain_1	7	1	+	9.04332545214221	7.9335099148186154	GAAATTCAGAAGTAATTA
chr1	30420371	30420372	chr1:30420372:C:G	chr1:30420372:C:G	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	30538778	30538779	chr1:30538779:T:C	rs12031413	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	30591348	30591349	chr1:30591349:T:C	rs12119536	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	8.706276607928991	6.313290865418492	AACATTATAAACCAATTG
chr1	30664640	30664641	chr1:30664641:C:T	rs72876407	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	6.871840734325009	7.981656271648602	GCCATTCGTGTCTAATTA
chr1	30664657	30664658	chr1:30664658:A:G	rs137870159	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr1	30804902	30804903	chr1:30804903:G:A	rs6668498	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	30857423	30857424	chr1:30857424:T:C	rs111251664	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	30964887	30964888	chr1:30964888:A:C	rs1283484349	A	C	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	31472072	31472073	chr1:31472073:T:C	rs2377791	T	C	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	31497788	31497789	chr1:31497789:G:A	rs142951243	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	31535898	31535899	chr1:31535899:A:G	rs6425763	A	G	G	Msx3.mouse_homeodomain_1	17	1	+	9.55889125751034	6.990731660327138	GCAATTCTATCTCAATTA
chr1	31535903	31535904	chr1:31535904:A:C	rs59341174	A	C	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr1	31776604	31776605	chr1:31776605:G:A	rs877674	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr1	31940322	31940323	chr1:31940323:G:A	rs115228667	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	31977559	31977560	chr1:31977560:G:A	rs112088860	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	32469066	32469067	chr1:32469067:T:A	rs75600973	T	A	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	32508186	32508187	chr1:32508187:C:T	rs77070833	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	33382398	33382399	chr1:33382399:C:T	rs72658275	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	33433412	33433413	chr1:33433413:T:C	rs11590395	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	9.289137301452659	7.231863122546462	GACATTAGCTATCAATTA
chr1	33503666	33503667	chr1:33503667:T:C	rs12047859	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	7.697918103783196	5.640643924877	GCTATTGGCTGTCAATTA
chr1	33786532	33786533	chr1:33786533:G:C	rs16835901	G	C	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	33789365	33789366	chr1:33789366:A:G	rs1925338	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.134756011741707	4.165325035372831	TCAATTTCCTACCCATTA
chr1	34645324	34645325	chr1:34645325:C:G	rs61776026	C	G	C	Msx3.mouse_homeodomain_1	3	1	-	8.031757307850228	9.121013919686202	GGAGTTAATGAACAATTA
chr1	34705352	34705353	chr1:34705353:C:T	rs17433361	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr1	35269368	35269369	chr1:35269369:G:A	rs111350667	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr1	35600860	35600861	chr1:35600861:T:C	rs76105449	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	8.331247725030483	7.287275425156769	CCAATCATTATACACTTA
chr1	36135171	36135172	chr1:36135172:A:C	rs11577123	A	C	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	36148102	36148103	chr1:36148103:A:C	rs4653162	A	C	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr1	36386254	36386255	chr1:36386255:C:G	rs531259670	C	G	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	36486659	36486660	chr1:36486660:G:C	rs72665818	G	C	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	36728211	36728212	chr1:36728212:G:C	rs4653217	G	C	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr1	36732118	36732119	chr1:36732119:T:C	rs6425998	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	7.923057532797908	7.030968500726659	GCAATCAGATGACATTTA
chr1	37262089	37262090	chr1:37262090:C:T	rs61779487	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	37358852	37358853	chr1:37358853:A:G	rs16824026	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	8.753768291525859	6.3116910645942985	ACAATCAAAGACTAATAA
chr1	37565094	37565095	chr1:37565095:T:C	rs6619	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	37888600	37888601	chr1:37888601:A:G	rs61776665	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	6.058455440120626	2.089024463751748	GCCATTACCCAGGCATTA
chr1	38271201	38271202	chr1:38271202:T:C	rs6698091	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	38291598	38291599	chr1:38291599:G:T	rs2773164	G	T	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr1	38656850	38656851	chr1:38656851:G:T	rs1555779	G	T	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	39047658	39047659	chr1:39047659:C:T	rs74587762	C	T	c	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	39047709	39047710	chr1:39047710:C:G	rs12407823	C	G	c	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	39151407	39151408	chr1:39151408:A:G	rs6679564	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	39179022	39179023	chr1:39179023:C:T	rs191831306	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	9.158454431567009	10.05054346363826	ATGATTAAACAGTGATTA
chr1	39215985	39215986	chr1:39215986:T:C	rs74066708	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	39618146	39618147	chr1:39618147:C:A	rs6600293	C	A	C	Msx3.mouse_homeodomain_1	0	1	-	9.444921068781174	8.25397881464638	GCAATTACCAAGCACTCA
chr1	40038877	40038878	chr1:40038878:T:G	rs3806207	T	G	G	Msx3.mouse_homeodomain_1	16	1	+	8.175818931033653	3.102286154924323	CTCATTACAGCCCCATTA
chr1	40038889	40038890	chr1:40038890:C:T	rs3806206	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	40065421	40065422	chr1:40065422:A:G	rs16826852	A	G	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr1	40327783	40327784	chr1:40327784:C:T	rs575911	C	T	t	Msx3.mouse_homeodomain_1	0	1	-	12.031753470081824	10.92324391491708	GAAATTAAAAAAAAATTA
chr1	40476890	40476891	chr1:40476891:T:C	rs56262362	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	40956638	40956639	chr1:40956639:G:A	rs28641158	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	41951840	41951841	chr1:41951841:G:T	rs1408949	G	T	G	Msx3.mouse_homeodomain_1	17	1	+	6.944548816045377	6.141922217349782	TCAATTACCTCCCACTTG
chr1	42234846	42234847	chr1:42234847:A:T	rs692802	A	T	A	Msx3.mouse_homeodomain_1	2	1	+	6.422242825276169	3.2668152070635488	CCAGTTAGGCTACAATTG
chr1	42767812	42767813	chr1:42767813:G:A	rs61775634	G	A	g	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr1	42996825	42996826	chr1:42996826:G:A	rs4660241	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	43088444	43088445	chr1:43088445:C:T	rs1098622	C	T	c	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	43286305	43286306	chr1:43286306:A:G	rs2784466	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.452898752798408	4.4834677764295305	CTCATTATCTTGTGATTA
chr1	43436008	43436009	chr1:43436009:A:G	rs116015784	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	44794875	44794876	chr1:44794876:T:A	rs12562538	T	A	t	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	45383258	45383259	chr1:45383259:G:T	rs4660852	G	T	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	45455040	45455041	chr1:45455041:A:G	rs116540017	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	45762409	45762410	chr1:45762410:A:C	rs11211179	A	C	c	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	45967429	45967430	chr1:45967430:G:T	rs12029972	G	T	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	46039841	46039842	chr1:46039842:T:G	rs116703570	T	G	T	Msx3.mouse_homeodomain_1	12	1	+	7.713325493670317	5.659065138620641	CCAATAAACAGCTTATTA
chr1	46369466	46369467	chr1:46369467:C:T	rs55670684	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	10.989908405402335	11.319849358118432	GTAATTACAAGTAAATTA
chr1	46949066	46949067	chr1:46949067:T:G	rs11211407	T	G	T	Msx3.mouse_homeodomain_1	3	1	-	7.688521364679066	4.808347000146166	CCAATTCTAAAGAAATTG
chr1	46949068	46949069	chr1:46949069:G:A	rs12120454	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	7.688521364679066	6.840678493798381	CCAATTCTAAAGAAATTG
chr1	47195127	47195128	chr1:47195128:C:A	rs148406765	C	A	c	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr1	47195148	47195149	chr1:47195149:T:C	rs12089424	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.993020748245513	4.4049265292223625	AAACTTAAACCCCAATTA
chr1	47554215	47554216	chr1:47554216:T:C	rs2485446	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	11.006073349676488	10.065529357290341	GCAATCATCATGCAATTG
chr1	47685803	47685804	chr1:47685804:A:G	rs372240678	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	47768786	47768787	chr1:47768787:A:G	rs77304380	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	47853842	47853843	chr1:47853843:C:T	rs11211621	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.810390291564635	6.365267627998152	CCTCTTACTCTGCAATTA
chr1	47853858	47853859	chr1:47853859:C:T	rs11576406	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	48051984	48051985	chr1:48051985:A:C	rs11582141	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	9.465513595589417	2.558048358665413	GTAATTACCTGGCATTTA
chr1	48098913	48098914	chr1:48098914:A:G	rs527084	A	G	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr1	48239718	48239719	chr1:48239719:G:A	rs11205459	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr1	48244523	48244524	chr1:48244524:C:T	rs1524734	C	T	c	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	48683822	48683823	chr1:48683823:C:T	rs17104657	C	T	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	49200924	49200925	chr1:49200925:G:A	rs11806611	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	7.807387200720325	6.362264537153844	AAGATCAAGTTGCAATTA
chr1	50116499	50116500	chr1:50116500:A:C	rs967582	A	C	C	Msx3.mouse_homeodomain_1	6	1	-	7.229260800117836	8.379465780298798	GTACTTTAGAAGCCATTA
chr1	50266647	50266648	chr1:50266648:T:A	rs61784230	T	A	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	50804874	50804875	chr1:50804875:C:T	rs77082692	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	52028361	52028362	chr1:52028362:C:T	rs3753197	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr1	52629909	52629910	chr1:52629910:A:G	rs11585624	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	6.7129629634412	-0.19450227348280613	ACAATTATGCGCCCATTT
chr1	52668193	52668194	chr1:52668194:T:C	rs269319	T	C	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr1	52752531	52752532	chr1:52752532:A:G	rs76381409	A	G	A	Msx3.mouse_homeodomain_1	10	1	-	6.60363978400333	5.5596674841296165	GCACTTCACTTGCCATTA
chr1	52752553	52752554	chr1:52752554:C:T	rs12082338	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr1	53685494	53685495	chr1:53685495:C:G	rs964146198	C	G	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	53685495	53685496	chr1:53685496:T:G	rs974466774	T	G	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	53889534	53889535	chr1:53889535:G:A	rs11206236	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	54268579	54268580	chr1:54268580:G:C	rs3766427	G	C	G	Msx3.mouse_homeodomain_1	17	1	+	7.653624260472962	5.634927276529655	CTAATTCAACCCCAATTG
chr1	54517882	54517883	chr1:54517883:A:G	rs7553532	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	54692773	54692774	chr1:54692774:T:C	rs10888862	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	9.430207447560768	3.3316617676916342	GCAATTGTGGAGCACTTA
chr1	54732045	54732046	chr1:54732046:T:G	rs72909897	T	G	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr1	54812720	54812721	chr1:54812721:G:C	rs618546	G	C	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	55235832	55235833	chr1:55235833:T:C	rs74073085	T	C	C	Msx3.mouse_homeodomain_1	1	1	+	8.19309038670785	9.040933257588536	ATAATTAAGTAGGAATTT
chr1	55351833	55351834	chr1:55351834:T:C	rs6683645	T	C	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	55697819	55697820	chr1:55697820:T:G	rs2767518	T	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr1	55750220	55750221	chr1:55750221:T:C	rs58551970	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.96355069077969	3.994119714410812	TCAATTAGAAGGAAGTTA
chr1	55750231	55750232	chr1:55750232:G:A	rs74961535	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	55869134	55869135	chr1:55869135:T:A	rs74678436	T	A	T	Msx3.mouse_homeodomain_1	13	1	-	10.213719428472476	6.031310965632511	CAGATTAAAAAATAATTA
chr1	55895927	55895928	chr1:55895928:A:G	rs6670261	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	10.224580567928793	6.255149591559916	CCAATCATCTTGCAATTG
chr1	56135721	56135722	chr1:56135722:T:C	rs58632737	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	6.9752620787401485	0.06779684181614276	ACAATTATCCACCAGTTG
chr1	56745530	56745531	chr1:56745531:C:G	rs11206912	C	G	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	56878223	56878224	chr1:56878224:C:T	rs2269115	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	9.712575824211854	10.71912515705706	GTAATTAAGCTGCAATGA
chr1	56883790	56883791	chr1:56883791:T:C	rs6697228	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr1	56974183	56974184	chr1:56974184:C:T	rs150798852	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	57280865	57280866	chr1:57280866:T:C	rs627550	T	C	C	Msx3.mouse_homeodomain_1	12	1	+	8.87391374907709	10.319036412643573	CACATTATATAATAATTA
chr1	57422105	57422106	chr1:57422106:A:G	rs35783414	A	G	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr1	57595931	57595932	chr1:57595932:T:C	rs71642131	T	C	t	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	57883332	57883333	chr1:57883333:T:C	rs1202824	T	C	.	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	57984735	57984736	chr1:57984736:G:A	rs76690137	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	8.045456254265098	6.848505229089688	TCAGTTAAATTGCATTTA
chr1	58324197	58324198	chr1:58324198:T:C	rs10127537	T	C	C	Msx3.mouse_homeodomain_1	3	1	-	12.534406870614717	8.564975894245837	GCTATTATAATACAATTA
chr1	58748752	58748753	chr1:58748753:C:T	rs12127952	C	T	T	Msx3.mouse_homeodomain_1	9	1	-	7.1448863289518245	8.085430321337967	GTGATTAACGGCAAATTG
chr1	59199777	59199778	chr1:59199778:G:A	rs17536126	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	59395146	59395147	chr1:59395147:T:C	rs17481692	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	59674574	59674575	chr1:59674575:G:A	rs7516441	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	9.419228189253523	8.222277164078111	GAAATAAAAAAGGAATTA
chr1	59741629	59741630	chr1:59741630:A:G	rs1207942	A	G	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	60017830	60017831	chr1:60017831:T:C	rs17120002	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	7.865394452512134	5.808120273605938	CCATTTGCCTACCAATTA
chr1	60017851	60017852	chr1:60017852:A:C	rs114613424	A	C	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	60054688	60054689	chr1:60054689:T:A	rs12742425	T	A	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	60575961	60575962	chr1:60575962:C:T	rs72675228	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr1	60579864	60579865	chr1:60579865:G:C	rs12727057	G	C	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	60621912	60621913	chr1:60621913:A:T	rs72675286	A	T	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	61109293	61109294	chr1:61109294:C:T	rs150872629	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	61203030	61203031	chr1:61203031:G:A	rs72929838	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr1	61345020	61345021	chr1:61345021:A:G	rs766489	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr1	61448318	61448319	chr1:61448319:A:G	rs6656834	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	61643008	61643009	chr1:61643009:T:C	rs11207795	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	61659419	61659420	chr1:61659420:A:T	rs12123270	A	T	T	Msx3.mouse_homeodomain_1	4	1	-	7.12886106956316	0.22383952382707695	ATGCTTACAAAGCAATTG
chr1	62005961	62005962	chr1:62005962:A:G	rs17122903	A	G	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr1	62069331	62069332	chr1:62069332:C:G	chr1:62069332:C:G	C	G	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr1	62199164	62199165	chr1:62199165:A:G	rs72679729	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	62295805	62295806	chr1:62295806:G:A	rs2765267	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	63099703	63099704	chr1:63099704:T:C	rs7549041	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	63149203	63149204	chr1:63149204:T:C	rs752696554	T	C	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	63616852	63616853	chr1:63616853:A:G	rs2269263	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	63747868	63747869	chr1:63747869:G:C	rs7554900	G	C	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr1	63771887	63771888	chr1:63771888:T:G	rs7519262	T	G	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	63771895	63771896	chr1:63771896:C:G	rs11577715	C	G	C	Msx3.mouse_homeodomain_1	0	1	+	7.568529003279127	7.93588051315374	CTGATAAAAGTGCCATTA
chr1	63772213	63772214	chr1:63772214:C:T	rs72926694	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr1	63877432	63877433	chr1:63877433:A:G	rs562947071	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	7.491893487191478	5.098907744680977	CACATTGTCAGGCAATTA
chr1	63921053	63921054	chr1:63921054:G:C	rs141567065	G	C	G	Msx3.mouse_homeodomain_1	5	1	+	9.697867651352052	11.747463686308713	ATAATGAATCAGCAATTA
chr1	64136161	64136162	chr1:64136162:A:G	rs7528814	A	G	G	Msx3.mouse_homeodomain_1	7	1	-	6.726129199445164	6.396188246729065	GTCATTATGATCCCATCA
chr1	64295831	64295832	chr1:64295832:A:G	rs17266284	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	64687255	64687256	chr1:64687256:A:G	rs75681619	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	64687257	64687258	chr1:64687258:C:T	rs2375523	C	T	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	65049849	65049850	chr1:65049850:A:G	rs478665	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	65344617	65344618	chr1:65344618:A:G	rs61066308	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	65405378	65405379	chr1:65405379:G:T	rs913199	G	T	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	65471795	65471796	chr1:65471796:A:G	rs7555955	A	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	65527872	65527873	chr1:65527873:C:T	rs6697315	C	T	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr1	65758438	65758439	chr1:65758439:G:A	rs6698197	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	65765624	65765625	chr1:65765625:G:A	rs12401401	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	66160356	66160357	chr1:66160357:T:C	rs937605	T	C	C	Msx3.mouse_homeodomain_1	10	1	-	8.378470106449573	7.3018789355130975	CCAATTAAATAGACATAA
chr1	66169237	66169238	chr1:66169238:C:T	rs11208807	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	66169290	66169291	chr1:66169291:G:T	rs111989448	G	T	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	66371569	66371570	chr1:66371570:C:T	rs61796507	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	7.638040684114569	6.529531128949825	GAAAATAAAAAACAATTA
chr1	66954851	66954852	chr1:66954852:G:A	rs112355788	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	66954907	66954908	chr1:66954908:C:G	rs2985830	C	G	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr1	67018786	67018787	chr1:67018787:T:C	rs2755244	T	C	C	Msx3.mouse_homeodomain_1	13	1	-	7.264735917246248	5.207461738340052	CCAGTTATAACCCATTTA
chr1	67042230	67042231	chr1:67042231:C:G	rs7539628	C	G	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	67134417	67134418	chr1:67134418:C:T	rs12069782	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	67195357	67195358	chr1:67195358:A:T	rs6656929	A	T	T	Msx3.mouse_homeodomain_1	17	1	-	8.968553284741963	12.339339480620762	CTCATTAAACAACAATTT
chr1	67213309	67213310	chr1:67213310:T:C	rs790633	T	C	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr1	67264371	67264372	chr1:67264372:A:G	rs6669582	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr1	67578702	67578703	chr1:67578703:G:A	rs787530	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	6.460093614294981	5.612250743414294	CCCATCACAGTGTAATTG
chr1	67690420	67690421	chr1:67690421:C:G	rs369377220	C	G	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr1	67719550	67719551	chr1:67719551:T:C	rs1543859	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr1	67755787	67755788	chr1:67755788:A:G	rs3766272	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	67837774	67837775	chr1:67837775:C:G	rs10889716	C	G	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	67880303	67880304	chr1:67880304:G:A	rs57969360	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	68145556	68145557	chr1:68145557:A:C	rs2772312	A	C	C	Msx3.mouse_homeodomain_1	17	1	+	7.286783840054745	2.6999272589282364	CCAACAAAATCCCAATTA
chr1	68145559	68145560	chr1:68145560:C:T	rs1556157	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr1	68229724	68229725	chr1:68229725:T:A	rs79249533	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	8.247046849909223	3.920286498559667	TCACTTAAACAGTAATTT
chr1	68271699	68271700	chr1:68271700:C:A	rs59129922	C	A	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	68349943	68349944	chr1:68349944:C:T	rs6674905	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	8.30218600010165	9.412001537425244	GACATTAGAGTGAAATTA
chr1	68377422	68377423	chr1:68377423:G:C	rs74551812	G	C	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	68476749	68476750	chr1:68476750:A:G	rs34349147	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.359410952200478	3.3899799758316	TCAATTGAGATCTAGTTA
chr1	68496570	68496571	chr1:68496571:C:T	rs17130714	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	68496577	68496578	chr1:68496578:C:T	rs76916552	C	T	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr1	69841737	69841738	chr1:69841738:G:A	rs1938577	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	69994202	69994203	chr1:69994203:A:G	rs984950	A	G	G	Msx3.mouse_homeodomain_1	10	1	+	8.35204326571623	7.275452094779754	CTGCTTAGGAACTAATTA
chr1	69994203	69994204	chr1:69994204:C:T	rs12034575	C	T	T	Msx3.mouse_homeodomain_1	11	1	+	8.35204326571623	6.6418128467325195	CTGCTTAGGAACTAATTA
chr1	69994620	69994621	chr1:69994621:A:G	rs72676879	A	G	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr1	70204628	70204629	chr1:70204629:T:C	rs6696040	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	70824528	70824529	chr1:70824529:A:G	rs4650090	A	G	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	71018883	71018884	chr1:71018884:G:A	rs2744918	G	A	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	71267288	71267289	chr1:71267289:G:A	rs17091046	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr1	71325231	71325232	chr1:71325232:A:G	rs78303831	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	71543596	71543597	chr1:71543597:G:A	rs61764984	G	A	G	Msx3.mouse_homeodomain_1	10	1	-	10.02846387451929	11.072436174393005	GCAATTAGGACACACTTA
chr1	72062855	72062856	chr1:72062856:T:C	rs1486082	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	10.781615807031539	8.388630064521038	GGCATTATTAACCAATTA
chr1	72197892	72197893	chr1:72197893:C:T	rs12141242	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	72375517	72375518	chr1:72375518:G:A	rs79547900	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	72498633	72498634	chr1:72498634:A:G	rs10493500	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	72706930	72706931	chr1:72706931:G:A	rs11210034	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	73517989	73517990	chr1:73517990:T:G	rs28565938	T	G	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	73518042	73518043	chr1:73518043:A:G	rs12724603	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	74392170	74392171	chr1:74392171:A:G	rs6669186	A	G	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	74436559	74436560	chr1:74436560:A:G	rs41289200	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	15.509470152642702	14.432878981706224	ATAATTATAAACCAATTA
chr1	74541035	74541036	chr1:74541036:T:C	rs7514705	T	C	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	74620727	74620728	chr1:74620728:G:C	rs41289218	G	C	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	75526333	75526334	chr1:75526334:A:G	rs211786	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	10.251974675833885	4.153428995964752	GTAATTAATTTGACATTA
chr1	75720534	75720535	chr1:75720535:C:T	rs146610383	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	76331463	76331464	chr1:76331464:C:A	rs6673488	C	A	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	77230391	77230392	chr1:77230392:A:G	rs12129330	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	77376222	77376223	chr1:77376223:A:T	rs60053175	A	T	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	77978863	77978864	chr1:77978864:C:T	rs112889586	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	78237547	78237548	chr1:78237548:G:A	rs11162435	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	78278477	78278478	chr1:78278478:A:G	rs1340156	A	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	78280852	78280853	chr1:78280853:C:G	rs1328444	C	G	G	Msx3.mouse_homeodomain_1	11	1	-	8.133805996618534	8.219271537328794	ATAAATAAAAAGTAATTA
chr1	78387944	78387945	chr1:78387945:T:C	rs140994146	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	78473335	78473336	chr1:78473336:A:G	rs1322924	A	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	78875272	78875273	chr1:78875273:T:A	rs113706158	T	A	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	79124267	79124268	chr1:79124268:T:G	rs4650389	T	G	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	79496062	79496063	chr1:79496063:C:T	rs12727530	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	9.554290066735188	10.560839399580395	GTTATTGAGGTGCAATTA
chr1	79743966	79743967	chr1:79743967:A:T	rs1916847	A	T	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	80376118	80376119	chr1:80376119:G:T	rs149917319	G	T	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	80534153	80534154	chr1:80534154:T:C	rs12124232	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	6.1102305722672385	5.033639401330765	GCAATTAAGGACCACCTA
chr1	80743211	80743212	chr1:80743212:G:T	rs5020501	G	T	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr1	80769750	80769751	chr1:80769751:A:G	rs945867	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr1	81115738	81115739	chr1:81115739:A:G	rs142028898	A	G	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	81123738	81123739	chr1:81123739:G:T	rs1768402	G	T	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	81185457	81185458	chr1:81185458:A:T	rs6696323	A	T	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr1	81234464	81234465	chr1:81234465:T:G	rs12749881	T	G	T	Msx3.mouse_homeodomain_1	4	1	+	8.78304020211798	3.1250509501682844	GTCATAAATAAGCAATTG
chr1	81351570	81351571	chr1:81351571:C:T	rs11163258	C	T	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	81493668	81493669	chr1:81493669:C:T	rs9425230	C	T	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	81723070	81723071	chr1:81723071:G:A	rs72715733	G	A	a	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	81755649	81755650	chr1:81755650:A:T	rs1498205	A	T	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	82598028	82598029	chr1:82598029:G:A	rs10493719	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	82700884	82700885	chr1:82700885:G:A	rs1433759	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	7.941170701013946	6.496048037447465	TACATTAGATGTCAATTA
chr1	82823982	82823983	chr1:82823983:C:A	rs61767685	C	A	T	Msx3.mouse_homeodomain_1	17	1	-	6.612468214228767	5.809841615533172	GCGATTAGACAGCATTTG
chr1	83606853	83606854	chr1:83606854:T:G	rs6683430	T	G	G	Msx3.mouse_homeodomain_1	15	1	+	9.84161701587761	2.934151778953605	TAACTTAACTTGCAATTA
chr1	83698091	83698092	chr1:83698092:T:C	rs4480380	T	C	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	83698263	83698264	chr1:83698264:T:C	rs11580318	T	C	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	83698300	83698301	chr1:83698301:G:A	rs182133288	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	83741403	83741404	chr1:83741404:A:T	rs12562442	A	T	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	83889734	83889735	chr1:83889735:T:A	rs11163862	T	A	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr1	83970591	83970592	chr1:83970592:C:A	rs2224990	C	A	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr1	84253706	84253707	chr1:84253707:C:A	rs11163930	C	A	C	Msx3.mouse_homeodomain_1	1	1	+	11.314510176301695	8.614220799361231	ACAATTAAAATACATTTA
chr1	84573075	84573076	chr1:84573076:A:G	rs2911591	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	7.8822911824368385	5.314131585253636	TTAATTGGGAGGCCATTA
chr1	84573077	84573078	chr1:84573078:G:C	rs185123896	G	C	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr1	84674871	84674872	chr1:84674872:G:T	rs6687220	G	T	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr1	85326372	85326373	chr1:85326373:A:C	rs233125	A	C	A	Msx3.mouse_homeodomain_1	0	1	+	9.434502863385767	10.175660908675901	ATAATTATATTACAATAA
chr1	85326372	85326373	chr1:85326373:A:G	chr1:85326373:A:G	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	9.434502863385767	10.54301241855051	ATAATTATATTACAATAA
chr1	85328884	85328885	chr1:85328885:C:G	rs72722672	C	G	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr1	85987131	85987132	chr1:85987132:C:T	rs482789	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr1	86000441	86000442	chr1:86000442:C:T	rs12040981	C	T	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr1	86054295	86054296	chr1:86054296:T:C	rs12750946	T	C	C	Msx3.mouse_homeodomain_1	7	1	+	12.041078864341255	11.711137911625155	GCAATTGTAACCTAATTA
chr1	86059671	86059672	chr1:86059672:C:T	rs545942108	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	86466618	86466619	chr1:86466619:A:T	rs5744296	A	T	A	Msx3.mouse_homeodomain_1	10	1	+	6.926128583035359	6.432557059060239	GCAATTGACCACCACTTT
chr1	87348417	87348418	chr1:87348418:G:A	rs12032178	G	A	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	87826977	87826978	chr1:87826978:T:C	rs13375846	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	8.220630071654227	2.122084391785092	CTAATTTATTGGCCATTA
chr1	87942004	87942005	chr1:87942005:A:G	rs915086	A	G	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	88188274	88188275	chr1:88188275:G:A	rs78100465	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	88333878	88333879	chr1:88333879:G:A	rs79204151	G	A	G	Msx3.mouse_homeodomain_1	9	1	-	12.922783734161058	13.814872766232309	GCAATAACACAGCAATTA
chr1	89462484	89462485	chr1:89462485:C:T	rs7556550	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	7.79578388961916	8.872375060555633	ACAATTAGTCGGTACTTA
chr1	89634555	89634556	chr1:89634556:G:A	rs11800664	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr1	89757513	89757514	chr1:89757514:C:T	rs6694039	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	89767666	89767667	chr1:89767667:T:G	rs12121735	T	G	T	Msx3.mouse_homeodomain_1	7	1	+	8.502716102852897	8.45284615951796	GCAATTATAAACCCAATA
chr1	90358374	90358375	chr1:90358375:C:T	rs10922847	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	7.753727990393736	8.083668943109833	CAAATTACCATGTAATTT
chr1	90621549	90621550	chr1:90621550:G:A	rs12048529	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	90724375	90724376	chr1:90724376:G:A	rs12089815	G	A	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	90777644	90777645	chr1:90777645:C:T	rs698276	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	90835094	90835095	chr1:90835095:T:A	rs184278198	T	A	T	Msx3.mouse_homeodomain_1	1	1	+	9.039936540572196	7.1874900345124155	GTCATTATCCAGCCATTA
chr1	91128932	91128933	chr1:91128933:T:A	rs240510	T	A	T	Msx3.mouse_homeodomain_1	9	1	+	6.647924321459883	7.062065593332965	GCGATTACATTCTGCTTA
chr1	91328533	91328534	chr1:91328534:G:C	rs7541566	G	C	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr1	91501687	91501688	chr1:91501688:C:T	chr1:91501688:C:T	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	91530001	91530002	chr1:91530002:T:C	rs10399810	T	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	91530028	91530029	chr1:91530029:T:C	rs10399813	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	7.736737963609376	4.611788810015522	CTAATTTTCTGCAAATTA
chr1	91582854	91582855	chr1:91582855:T:G	rs12023428	T	G	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	91687933	91687934	chr1:91687934:C:G	rs6604050	C	G	G	Msx3.mouse_homeodomain_1	8	1	+	8.312733228149185	8.225750719936531	GCGATTTTCTATCAATTA
chr1	91777625	91777626	chr1:91777626:C:T	rs11165476	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr1	91792545	91792546	chr1:91792546:G:A	rs11799400	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr1	92079134	92079135	chr1:92079135:A:G	rs17131598	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	13.852635994802444	11.795361815896246	ATAATTAAGAATCAATTA
chr1	92300290	92300291	chr1:92300291:A:T	rs1542685	A	T	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	92484644	92484645	chr1:92484645:T:G	rs193012982	T	G	T	Msx3.mouse_homeodomain_1	5	1	+	8.039696244431191	3.597114466964029	CTCATTAACCCCCAATCA
chr1	92488970	92488971	chr1:92488971:C:T	rs12568629	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	92641313	92641314	chr1:92641314:C:T	rs3936945	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	93252188	93252189	chr1:93252189:T:C	rs797681	T	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr1	93304776	93304777	chr1:93304777:A:C	rs11164896	A	C	A	Msx3.mouse_homeodomain_1	7	1	+	8.2521984344618	6.862311887757044	TTCCTCAAAATGCAATTA
chr1	93322483	93322484	chr1:93322484:C:T	rs7545358	C	T	c	Msx3.mouse_homeodomain_1	11	1	+	8.807322281872743	7.097091862889035	GCAATTACTTTCGCATTA
chr1	93347186	93347187	chr1:93347187:A:T	rs74819936	A	T	A	Msx3.mouse_homeodomain_1	11	1	+	8.69380839255459	8.265994539456553	GAACTTAGATAATAATTA
chr1	93449702	93449703	chr1:93449703:T:G	rs72721009	T	G	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	93449727	93449728	chr1:93449728:A:G	rs72721010	A	G	A	Msx3.mouse_homeodomain_1	6	1	-	9.521771850261459	8.869038250901816	CCAATATAAGAACAATTA
chr1	93672616	93672617	chr1:93672617:G:A	rs9659100	G	A	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	93745407	93745408	chr1:93745408:C:T	rs12410106	C	T	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	94083704	94083705	chr1:94083705:A:G	rs572960	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	94528187	94528188	chr1:94528188:T:G	rs145116544	T	G	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	94615888	94615889	chr1:94615889:C:T	rs4474258	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	94615889	94615890	chr1:94615890:G:A	rs35909914	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	95022637	95022638	chr1:95022638:C:A	rs1356046925	C	A	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	95043027	95043028	chr1:95043028:A:C	rs60555923	A	C	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	95096149	95096150	chr1:95096150:T:C	rs11591183	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	7.883828186617028	7.553887233900929	GTTATTCTCTACCAATTA
chr1	95096162	95096163	chr1:95096163:C:T	rs116043384	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr1	95286828	95286829	chr1:95286829:A:T	rs912648	A	T	A	Msx3.mouse_homeodomain_1	17	1	+	8.41912977325044	5.048343577371643	CCCATTAGTAATGAATTA
chr1	95340107	95340108	chr1:95340108:A:G	rs7550251	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	7.7020402629383655	8.810549818103109	ATACTTTCCAAGCAATTA
chr1	95475770	95475771	chr1:95475771:T:G	rs1337552	T	G	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	95490760	95490761	chr1:95490761:G:A	rs79323061	G	A	g	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	95652750	95652751	chr1:95652751:G:A	rs17114028	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr1	95805569	95805570	chr1:95805570:C:T	rs4345843	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr1	95850717	95850718	chr1:95850718:T:C	rs4949973	T	C	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	95985681	95985682	chr1:95985682:A:T	rs1458632	A	T	T	Msx3.mouse_homeodomain_1	17	1	+	11.77832501011423	8.407538814235433	ACAATTATAAGCTGATTA
chr1	96105934	96105935	chr1:96105935:A:G	rs986572	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	7.630508546271873	6.52069300894828	GCAGTCAAAAGGCAATTT
chr1	96524605	96524606	chr1:96524606:A:G	rs1231985	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	96660155	96660156	chr1:96660156:T:C	rs58139858	T	C	c	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	97140923	97140924	chr1:97140924:C:T	rs12023630	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	97436014	97436015	chr1:97436015:G:T	rs12073650	G	T	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	97488846	97488847	chr1:97488847:G:C	rs12121057	G	C	C	Msx3.mouse_homeodomain_1	10	1	-	8.117234017528734	8.578186670441095	TTGATTACATCCAAATTA
chr1	97798053	97798054	chr1:97798054:C:T	rs1931063	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	6.674912198589654	7.681461531434862	CCAACTAAGATCCAATAA
chr1	98005536	98005537	chr1:98005537:T:C	rs115096908	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr1	98102837	98102838	chr1:98102838:T:C	rs12731784	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	7.3843813347049965	6.3778320018597885	ACAGTTACAAAGCAGTTA
chr1	98736215	98736216	chr1:98736216:T:C	rs11810907	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	7.3642327781711305	4.971247035660632	GCCATTGCATGGCAATTT
chr1	98850360	98850361	chr1:98850361:A:G	rs12035716	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	11.939865327518643	5.841319647649509	ACAATTACATGGAAATTA
chr1	99017702	99017703	chr1:99017703:A:G	rs72732456	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr1	99132202	99132203	chr1:99132203:A:G	rs302750	A	G	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr1	99180913	99180914	chr1:99180914:G:A	rs17393937	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	99304518	99304519	chr1:99304519:A:G	rs819920	A	G	A	Msx3.mouse_homeodomain_1	11	1	+	9.149312996502253	10.346264021677662	CAAATTTAAGTACAATTA
chr1	99527520	99527521	chr1:99527521:C:T	rs4908327	C	T	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	99738745	99738746	chr1:99738746:T:C	rs6577129	T	C	t	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	100530517	100530518	chr1:100530518:T:C	rs6577175	T	C	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr1	100565606	100565607	chr1:100565607:A:G	rs12130681	A	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	100625819	100625820	chr1:100625820:T:C	rs7520474	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	10.121708394604958	7.6796311676734	TCAATTAAGATGTTATTA
chr1	100631650	100631651	chr1:100631651:T:A	rs71660925	T	A	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	100721566	100721567	chr1:100721567:C:A	rs3917032	C	A	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	100814899	100814900	chr1:100814900:T:C	rs4609449	T	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	100977152	100977153	chr1:100977153:A:C	rs113365939	A	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	101027061	101027062	chr1:101027062:C:G	rs918345101	C	G	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	101107851	101107852	chr1:101107852:C:T	rs12727236	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	7.945237438597518	6.748286413422107	CTGATTAAGGAGTAATTT
chr1	101375605	101375606	chr1:101375606:C:T	rs150007385	C	T	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	101398989	101398990	chr1:101398990:T:A	rs114539337	T	A	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr1	101772731	101772732	chr1:101772732:A:G	rs12118497	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr1	102085460	102085461	chr1:102085461:T:C	rs55825283	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	102123715	102123716	chr1:102123716:C:T	rs575003605	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	102303091	102303092	chr1:102303092:A:C	rs6697406	A	C	A	Msx3.mouse_homeodomain_1	3	1	+	8.341583771137255	5.461409406604354	GAAATAAAAACCCAATCA
chr1	103116643	103116644	chr1:103116644:C:T	rs76573519	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	103157162	103157163	chr1:103157163:T:C	rs7518542	T	C	C	Msx3.mouse_homeodomain_1	3	1	-	9.839026672300363	5.869595695931483	GTAATTGGAAGGCAATCA
chr1	103160406	103160407	chr1:103160407:G:A	rs61815034	G	A	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	103190859	103190860	chr1:103190860:T:C	rs12125356	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.279582955762713	4.691488736739562	GAAATAGAAAAACAATTA
chr1	103479919	103479920	chr1:103479920:C:T	rs11576889	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	7.8331447503165865	7.06030457357469	TCCATTGAACACCAATTT
chr1	104358902	104358903	chr1:104358903:C:T	rs17021478	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr1	104602801	104602802	chr1:104602802:A:T	rs11184223	A	T	t	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr1	104717261	104717262	chr1:104717262:G:A	rs1904982	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	107062175	107062176	chr1:107062176:A:T	rs74786571	A	T	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr1	107062211	107062212	chr1:107062212:G:A	rs75012945	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	107089918	107089919	chr1:107089919:T:C	rs1762490	T	C	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	107247256	107247257	chr1:107247257:T:C	rs76866557	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	11.10506977884485	8.662992551913295	CTAATTAAGTAATGATTA
chr1	107650995	107650996	chr1:107650996:T:C	rs7516976	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr1	107754600	107754601	chr1:107754601:T:C	rs13375446	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr1	107795948	107795949	chr1:107795949:C:T	rs6661857	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	107935182	107935183	chr1:107935183:T:C	rs17020409	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr1	108060443	108060444	chr1:108060444:T:G	rs75081181	T	G	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	108662003	108662004	chr1:108662004:T:C	rs10857840	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr1	108748179	108748180	chr1:108748180:A:T	rs6701529	A	T	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	109117444	109117445	chr1:109117445:G:A	rs35502610	G	A	g	Msx3.mouse_homeodomain_1	11	1	-	6.176421949039818	4.466191530056109	CCCCTTTGAGGCCAATTA
chr1	109480987	109480988	chr1:109480988:G:A	rs12145677	G	A	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	109510525	109510526	chr1:109510526:C:G	rs919958	C	G	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr1	109825730	109825731	chr1:109825731:T:G	rs520112	T	G	T	Msx3.mouse_homeodomain_1	12	1	+	8.799045286255659	6.7447849312059835	CCAATTGTAAAGTATTTA
chr1	109980601	109980602	chr1:109980602:A:G	chr1:109980602:A:G	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	7.0074729739724075	8.452595637538888	CCACTGACATTGTAATTA
chr1	110171517	110171518	chr1:110171518:G:A	rs59396652	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	110315041	110315042	chr1:110315042:T:A	rs547370	T	A	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	110424700	110424701	chr1:110424701:T:G	rs767234523	T	G	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	110645904	110645905	chr1:110645905:G:A	rs11102142	G	A	A	Msx3.mouse_homeodomain_1	0	1	+	8.90279085251802	7.794281297353277	GTAATTATTAAAACATTA
chr1	110771280	110771281	chr1:110771281:T:C	rs343799	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	9.710865633130606	7.142706035947405	ACAATTATTAAACATTTA
chr1	110771289	110771290	chr1:110771290:A:C	rs343800	A	C	A	Msx3.mouse_homeodomain_1	8	1	-	9.710865633130606	9.74158677344295	ACAATTATTAAACATTTA
chr1	110786443	110786444	chr1:110786444:C:G	rs343807	C	G	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	111438327	111438328	chr1:111438328:T:C	rs2485321	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	8.101689075349823	7.2096000432785745	TCAATTAACTCAAAATTG
chr1	111626798	111626799	chr1:111626799:T:C	rs116143757	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	111660829	111660830	chr1:111660830:G:T	rs10776734	G	T	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr1	111941938	111941939	chr1:111941939:G:C	rs2995813	G	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	111947825	111947826	chr1:111947826:T:C	rs1807211	T	C	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	112403524	112403525	chr1:112403525:T:C	rs116010735	T	C	t	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	112418000	112418001	chr1:112418001:C:G	rs2492513	C	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr1	112431776	112431777	chr1:112431777:T:G	rs2483349	T	G	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	112468621	112468622	chr1:112468622:C:T	rs7416024	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	112791568	112791569	chr1:112791569:G:A	rs10857976	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	112838102	112838103	chr1:112838103:T:C	rs12083699	T	C	t	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr1	113051755	113051756	chr1:113051756:G:A	rs9429509	G	A	g	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr1	113098312	113098313	chr1:113098313:A:G	rs1216808	A	G	N	Msx3.mouse_homeodomain_1	3	1	+	7.217033466181507	3.2476024898126306	CCCATTAATCTGAAATCA
chr1	113533923	113533924	chr1:113533924:A:G	rs11102649	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	12.120194940092492	9.727209197581988	AAAATTAAAAAGAAATTA
chr1	113810701	113810702	chr1:113810702:T:C	rs17509390	T	C	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr1	113814040	113814041	chr1:113814041:A:G	rs3811021	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	10.246286607486377	7.7294179795493	ACAATTACCTGCCAATTT
chr1	113887995	113887996	chr1:113887996:G:T	rs1018592	G	T	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	114334761	114334762	chr1:114334762:G:A	rs582727	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	7.255450372286776	5.810327708720293	CCAATTCAAATGCAAATA
chr1	114435400	114435401	chr1:114435401:C:A	rs34732139	C	A	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	115186795	115186796	chr1:115186796:C:T	rs1294392	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	115282675	115282676	chr1:115282676:G:A	rs140525073	G	A	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	115282680	115282681	chr1:115282681:C:T	rs563574074	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	115409720	115409721	chr1:115409721:G:A	rs1547183	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr1	115555469	115555470	chr1:115555470:C:T	rs17163963	C	T	c	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	115557976	115557977	chr1:115557977:C:T	rs17486085	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	115679757	115679758	chr1:115679758:T:C	rs5027724	T	C	c	Msx3.mouse_homeodomain_1	10	1	-	11.506554546267463	10.429963375330988	AAAATTAAAAAGCAATCA
chr1	116077129	116077130	chr1:116077130:T:A	rs1158335	T	A	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr1	116313125	116313126	chr1:116313126:C:T	rs112904861	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	116396949	116396950	chr1:116396950:A:C	rs11808075	A	C	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	116494294	116494295	chr1:116494295:G:T	rs757564181	G	T	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	116874902	116874903	chr1:116874903:A:C	rs35460124	A	C	A	Msx3.mouse_homeodomain_1	8	1	+	10.146062270388198	9.226495445755644	CTAATTAAAAAAAAATTT
chr1	117013542	117013543	chr1:117013543:G:A	rs17235752	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	6.6571312488376675	5.809288377956983	GCAATTTCAGTCCCATTG
chr1	117058996	117058997	chr1:117058997:G:A	rs3754109	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	117166148	117166149	chr1:117166149:G:A	rs78516711	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr1	117599331	117599332	chr1:117599332:A:T	rs12037457	A	T	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr1	117607425	117607426	chr1:117607426:G:A	rs3767805	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr1	117696926	117696927	chr1:117696927:T:A	rs144788093	T	A	T	Msx3.mouse_homeodomain_1	4	1	+	12.769413092818084	5.864391547082004	ACAATTATAAGCAAATTA
chr1	117820807	117820808	chr1:117820808:G:A	rs2104044	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr1	118210206	118210207	chr1:118210207:T:G	rs10923519	T	G	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	118481016	118481017	chr1:118481017:C:T	rs1229119	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	118662386	118662387	chr1:118662387:A:G	rs73005287	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr1	118756333	118756334	chr1:118756334:A:C	rs12094115	A	C	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	119449538	119449539	chr1:119449539:C:G	rs12039340	C	G	.	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	119815634	119815635	chr1:119815635:A:G	rs74813561	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.604400603229863	5.016306384206714	TTCATTTAATTCCAATTA
chr1	119986249	119986250	chr1:119986250:A:C	rs4659023	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	12.908312442194159	7.250323190244459	ACAATTAAGAACTGATTA
chr1	147197314	147197315	chr1:147197315:T:C	rs718369	T	C	t	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	147377891	147377892	chr1:147377892:G:A	rs1806617	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr1	147586315	147586316	chr1:147586316:C:A	rs59188898	C	A	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	147760701	147760702	chr1:147760702:C:A	rs186989046	C	A	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	150187391	150187392	chr1:150187392:T:C	rs73005621	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	6.979332120516529	6.649391167800432	TCACTTATCTTCCAGTTA
chr1	150187405	150187406	chr1:150187406:A:G	rs73005622	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr1	150410544	150410545	chr1:150410545:G:A	rs12741448	G	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	150477922	150477923	chr1:150477923:C:T	rs115681308	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	150571508	150571509	chr1:150571509:C:G	rs192135776	C	G	.	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr1	150571512	150571513	chr1:150571513:A:G	rs16837756	A	G	.	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	150698007	150698008	chr1:150698008:T:G	rs6700022	T	G	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	150749084	150749085	chr1:150749085:A:G	rs181085131	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.410244149728928	4.440813173360052	ACAATGATATTGAAATTA
chr1	151060220	151060221	chr1:151060221:G:T	rs41266624	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr1	151199730	151199731	chr1:151199731:T:G	rs984653905	T	G	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	151444276	151444277	chr1:151444277:G:A	rs769407105	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	152190091	152190092	chr1:152190092:T:C	rs4845733	T	C	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	152190094	152190095	chr1:152190095:T:G	chr1:152190095:T:G	T	G	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	153099843	153099844	chr1:153099844:T:C	rs74801200	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	8.680773013942282	1.7733077770182777	CACATTACAATCAAATTA
chr1	153717536	153717537	chr1:153717537:T:G	rs7550138	T	G	T	Msx3.mouse_homeodomain_1	12	1	+	9.191235865065071	7.136975510015394	CCAATTTGAACATAATTA
chr1	153802206	153802207	chr1:153802207:A:T	rs4567311	A	T	A	Msx3.mouse_homeodomain_1	17	1	+	8.128632734952745	4.757846539073949	CCAATCTACAACCAATCA
chr1	153923151	153923152	chr1:153923152:G:A	rs147097629	G	A	G	Msx3.mouse_homeodomain_1	2	1	+	7.618389331883434	10.135257959820514	GTGCTTAAAACCCAATCA
chr1	154475023	154475024	chr1:154475024:T:G	chr1:154475024:T:G	T	G	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr1	154475028	154475029	chr1:154475029:C:G	rs16836028	C	G	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	154475032	154475033	chr1:154475033:G:C	rs76215472	G	C	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	154744674	154744675	chr1:154744675:A:G	rs11577391	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	154757575	154757576	chr1:154757576:A:G	rs774740945	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	6.709854845987906	5.769310853601762	CTAATTCCCAGGCCATTA
chr1	154778400	154778401	chr1:154778401:T:G	rs10908439	T	G	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	154863257	154863258	chr1:154863258:G:A	rs12145618	G	A	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	154932702	154932703	chr1:154932703:A:G	rs7543051	A	G	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	157107784	157107785	chr1:157107785:G:T	rs6689840	G	T	G	Msx3.mouse_homeodomain_1	5	1	-	6.637389434556291	6.2089731299104125	CCGATCGTGGGGCAATTA
chr1	157164035	157164036	chr1:157164036:T:C	rs1176547	T	C	t	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	157273208	157273209	chr1:157273209:A:G	rs1338689	A	G	-	Msx3.mouse_homeodomain_1	5	1	-	6.876319618523561	4.48333387601306	GCCATTGTGTTACAATTG
chr1	157278290	157278291	chr1:157278291:G:T	rs72702670	G	T	N	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	157280430	157280431	chr1:157280431:G:A	rs10752620	G	A	N	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr1	157519516	157519517	chr1:157519517:G:A	rs3811033	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	9.029898052487631	7.83294702731222	TAAATGAAAAGGCAATTA
chr1	157748989	157748990	chr1:157748990:A:G	rs3818814	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	8.989050179229388	2.890504499360254	GGGATTATCATACAATTA
chr1	157748995	157748996	chr1:157748996:A:G	rs199944062	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	158248579	158248580	chr1:158248580:C:G	rs16840031	C	G	.	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	158494820	158494821	chr1:158494821:T:G	rs4614256	T	G	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	158951773	158951774	chr1:158951774:G:C	rs72704932	G	C	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr1	159010743	159010744	chr1:159010744:C:T	rs12756557	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr1	159343283	159343284	chr1:159343284:A:G	rs80015712	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	12.012556087808768	9.444396490625564	GAAATTAGGTAACAATTA
chr1	159776088	159776089	chr1:159776089:T:C	rs4074173	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	7.932834953063149	6.9922909606770025	ACAAGAAACAAGCAATTA
chr1	159983311	159983312	chr1:159983312:T:G	rs4656862	T	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	160149987	160149988	chr1:160149988:C:T	rs11265333	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	160522724	160522725	chr1:160522725:A:T	rs1324735	A	T	T	Msx3.mouse_homeodomain_1	1	1	-	9.23157966557877	7.379133159518992	ATTATTAAAAACCTATTA
chr1	160576865	160576866	chr1:160576866:C:T	rs2369721	C	T	T	Msx3.mouse_homeodomain_1	7	1	-	8.382676892809023	9.492492430132618	GTAATAAGTAACCATTTA
chr1	160706503	160706504	chr1:160706504:C:T	rs11584616	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	160709318	160709319	chr1:160709319:T:C	rs192552801	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr1	160709321	160709322	chr1:160709322:C:T	rs150464096	C	T	c	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	160887173	160887174	chr1:160887174:A:G	rs4656958	A	G	N	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr1	161201945	161201946	chr1:161201946:A:G	rs115518404	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	8.814404637020438	2.7158589571513034	CCAATTACTTTCCCATCA
chr1	161410031	161410032	chr1:161410032:T:A	rs111843824	T	A	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	161542407	161542408	chr1:161542408:C:T	rs556866217	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	162169080	162169081	chr1:162169081:G:A	rs17457052	G	A	G	Msx3.mouse_homeodomain_1	13	1	-	6.943807924937967	5.645592518575376	GCAGTTAGAATCCCATCA
chr1	162197128	162197129	chr1:162197129:G:C	rs6663969	G	C	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	162214112	162214113	chr1:162214113:T:C	rs6677606	T	C	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	162247598	162247599	chr1:162247599:C:G	rs17425467	C	G	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr1	162520184	162520185	chr1:162520185:T:C	rs357039	T	C	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	162538752	162538753	chr1:162538753:A:C	rs115014411	A	C	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	162662482	162662483	chr1:162662483:A:G	rs7554982	A	G	G	Msx3.mouse_homeodomain_1	8	1	+	7.928087507113683	6.921538174268474	CACATTATATGGAAATTA
chr1	162861931	162861932	chr1:162861932:C:T	rs12024208	C	T	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr1	162861973	162861974	chr1:162861974:G:C	rs1828374	G	C	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr1	162890579	162890580	chr1:162890580:T:C	rs12122013	T	C	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	162909247	162909248	chr1:162909248:G:A	rs10753592	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	7.38116677625817	7.711107728974267	GAAATCACAAGGGAATTA
chr1	162964677	162964678	chr1:162964678:A:T	rs6427702	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	10.579888364956538	4.500974945598681	CCCATTAAATAAGAATTA
chr1	162982102	162982103	chr1:162982103:C:T	rs12164672	C	T	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	163171700	163171701	chr1:163171701:C:T	rs12041294	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	163172377	163172378	chr1:163172378:A:G	rs10917690	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	7.737949384673503	5.344963642163003	GCATTTAACTACCATTTA
chr1	163172746	163172747	chr1:163172747:G:A	rs10917691	G	A	A	Msx3.mouse_homeodomain_1	1	1	-	8.658302256123925	7.810459385243241	ACAATGAACTCCTAATTA
chr1	163172764	163172765	chr1:163172765:G:A	rs12035879	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	163215000	163215001	chr1:163215001:T:C	rs2940675	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	163250423	163250424	chr1:163250424:G:T	rs10494392	G	T	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr1	163275702	163275703	chr1:163275703:G:A	rs10158993	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	7.51976466774044	6.69617392348026	CTCCTGAAAAAGCAATTA
chr1	163467197	163467198	chr1:163467198:C:T	rs10917763	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr1	164599246	164599247	chr1:164599247:T:A	rs34572390	T	A	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	164610511	164610512	chr1:164610512:G:A	rs35896229	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr1	164982004	164982005	chr1:164982005:A:G	rs4300198	A	G	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	165353495	165353496	chr1:165353496:A:G	rs71628377	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr1	165408923	165408924	chr1:165408924:C:G	rs157861	C	G	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	165696648	165696649	chr1:165696649:G:A	rs111835770	G	A	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	165773043	165773044	chr1:165773044:T:C	rs73014663	T	C	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr1	165937998	165937999	chr1:165937999:T:C	rs10800170	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	5.709952108133272	3.1930834801961945	GCAGTTGGCTGCCCATTA
chr1	165938018	165938019	chr1:165938019:G:A	rs10800171	G	A	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	166479165	166479166	chr1:166479166:T:G	rs16857176	T	G	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr1	166613054	166613055	chr1:166613055:A:G	rs7546913	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	167447632	167447633	chr1:167447633:G:A	rs76811180	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	167465039	167465040	chr1:167465040:T:C	rs2995091	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr1	167675673	167675674	chr1:167675674:G:A	rs7551114	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	167687119	167687120	chr1:167687120:G:A	rs16859421	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr1	167737283	167737284	chr1:167737284:G:A	rs10918754	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	168002740	168002741	chr1:168002741:G:T	rs436256	G	T	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	168002741	168002742	chr1:168002742:C:G	rs428694	C	G	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	168002784	168002785	chr1:168002785:G:A	rs202248	G	A	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	168466183	168466184	chr1:168466184:G:T	rs78294132	G	T	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	168546193	168546194	chr1:168546194:C:T	rs574353156	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	168574992	168574993	chr1:168574993:C:T	rs3753938	C	T	c	Msx3.mouse_homeodomain_1	9	1	-	7.419901188856728	8.360445181242874	CAAATCATAGGCCAATTG
chr1	168920741	168920742	chr1:168920742:C:A	rs190340769	C	A	C	Msx3.mouse_homeodomain_1	8	1	-	7.8939349546166815	7.863213814304339	AAAATAAGGCTGCAATTA
chr1	168920747	168920748	chr1:168920748:T:C	rs7541615	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	7.8939349546166815	5.377066326679604	AAAATAAGGCTGCAATTA
chr1	168959193	168959194	chr1:168959194:C:A	rs16861804	C	A	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	168959197	168959198	chr1:168959198:A:G	rs72707105	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	168964229	168964230	chr1:168964230:G:T	rs10489372	G	T	G	Msx3.mouse_homeodomain_1	11	1	-	6.358178117117403	5.0757615512317305	GCTCTTATGGACCAATCA
chr1	169178134	169178135	chr1:169178135:A:G	rs1830495	A	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	169557987	169557988	chr1:169557988:A:G	rs1981491	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.420206061793209	3.8321118427700602	CCCATTTACCCCCAATTA
chr1	169878541	169878542	chr1:169878542:G:A	rs6683056	G	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr1	170204222	170204223	chr1:170204223:G:A	rs59831417	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	170461448	170461449	chr1:170461449:C:T	rs539282993	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	170929114	170929115	chr1:170929115:C:T	rs6679669	C	T	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	171082635	171082636	chr1:171082636:G:A	rs67806272	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	171198017	171198018	chr1:171198018:C:T	rs10912542	C	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	171251140	171251141	chr1:171251141:T:G	rs12732229	T	G	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	171725425	171725426	chr1:171725426:C:A	rs6678890	C	A	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	171801098	171801099	chr1:171801099:G:A	rs11587288	G	A	G	Msx3.mouse_homeodomain_1	10	1	-	7.54964582406486	8.593618123938572	ACACTCAGGGCCCAATTA
chr1	171806074	171806075	chr1:171806075:A:G	rs80186932	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.51894440199952	3.9308501829763696	GGAATTATGATCCTATTA
chr1	171842815	171842816	chr1:171842816:T:C	rs10913823	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	6.660815162428315	6.778518810953309	GCAATTCATGAGGGATTA
chr1	172180990	172180991	chr1:172180991:G:T	rs183043945	G	T	G	Msx3.mouse_homeodomain_1	9	1	+	5.884354469826529	6.410757190339591	GCAAGTACGGAGCACTTA
chr1	172218262	172218263	chr1:172218263:G:A	rs912300	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	172324934	172324935	chr1:172324935:G:A	rs75481731	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr1	172476562	172476563	chr1:172476563:A:G	rs73048551	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.013907782138467	4.044476805769589	GCCATTAGAGACCAAATA
chr1	172883772	172883773	chr1:172883773:A:G	rs6672265	A	G	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr1	173016090	173016091	chr1:173016091:T:C	rs1883478	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr1	173023612	173023613	chr1:173023613:T:C	rs7543014	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	173475505	173475506	chr1:173475506:T:C	rs9425722	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	173475506	173475507	chr1:173475507:G:A	rs35152701	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	173518784	173518785	chr1:173518785:G:T	rs12080722	G	T	T	Msx3.mouse_homeodomain_1	11	1	-	9.045015390310729	7.762598824425057	GCCATTAAAAACAAATTC
chr1	174077200	174077201	chr1:174077201:A:G	rs77772149	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	174266647	174266648	chr1:174266648:T:C	rs148126624	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr1	174654783	174654784	chr1:174654784:A:G	rs11806996	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	174656562	174656563	chr1:174656563:C:T	rs411665	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	175894176	175894177	chr1:175894177:A:G	rs11801399	A	G	G	Msx3.mouse_homeodomain_1	8	1	+	8.368131586457654	7.361582253612446	TCAATTATAAAAGAATCA
chr1	176141910	176141911	chr1:176141911:G:C	rs12033997	G	C	G	Msx3.mouse_homeodomain_1	1	1	-	9.036676710731038	5.772327853702722	ACAATTAAAAAAAAATTC
chr1	176628973	176628974	chr1:176628974:C:T	rs58035298	C	T	c	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	176849610	176849611	chr1:176849611:A:G	rs12091765	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	176877925	176877926	chr1:176877926:T:C	rs4652199	T	C	C	Msx3.mouse_homeodomain_1	10	1	-	9.577242410116757	8.500651239180282	AGAATCATTAAGCAATTA
chr1	176897775	176897776	chr1:176897776:A:T	rs11804827	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	10.75855525765424	6.5761467948142736	ATAATTAAAGGAAAATTA
chr1	177982849	177982850	chr1:177982850:C:A	rs10753176	C	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	178399044	178399045	chr1:178399045:A:G	rs2048333	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	178506507	178506508	chr1:178506508:T:C	chr1:178506508:T:C	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr1	179013081	179013082	chr1:179013082:T:C	rs6697029	T	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	179047794	179047795	chr1:179047795:T:A	rs3766633	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	7.851463506295393	4.259181299182874	GACATTAATTTGCACTTA
chr1	179300413	179300414	chr1:179300414:A:T	rs12049237	A	T	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	179437300	179437301	chr1:179437301:C:T	rs4360491	C	T	c	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	179437340	179437341	chr1:179437341:T:A	rs4418554	T	A	a	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	179442988	179442989	chr1:179442989:G:C	rs11578241	G	C	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	179443021	179443022	chr1:179443022:A:G	rs6425556	A	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	179785250	179785251	chr1:179785251:A:G	rs76434644	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	179973595	179973596	chr1:179973596:A:G	rs76425715	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	7.745138847408495	7.862842495933491	ATCATTAATGTGCAATAA
chr1	180182811	180182812	chr1:180182812:C:T	rs116381512	C	T	C	Msx3.mouse_homeodomain_1	9	1	-	5.649963564936742	6.590507557322887	GCCATTAACGGGCCATTC
chr1	180182825	180182826	chr1:180182826:G:A	chr1:180182826:G:A	G	A	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr1	180425021	180425022	chr1:180425022:C:A	rs16856007	C	A	C	Msx3.mouse_homeodomain_1	13	1	-	6.209620100923618	4.084485816989849	GGAATGACAAGGCGATTA
chr1	180634257	180634258	chr1:180634258:G:A	rs12062205	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	180863488	180863489	chr1:180863489:G:A	rs10914121	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr1	181118154	181118155	chr1:181118155:G:C	rs114706851	G	C	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	181149584	181149585	chr1:181149585:G:C	rs12061088	G	C	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	181149597	181149598	chr1:181149598:T:C	rs35124765	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	181152271	181152272	chr1:181152272:A:G	rs4652570	A	G	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	181248997	181248998	chr1:181248998:G:A	rs4102468	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	181554378	181554379	chr1:181554379:G:C	rs2877684	G	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	182236348	182236349	chr1:182236349:C:T	rs190290610	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	182568660	182568661	chr1:182568661:G:A	rs12034888	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr1	182968924	182968925	chr1:182968925:A:G	rs148688851	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.877591621664148	5.908160645295269	ACAATTAAGATTTCATTA
chr1	183209622	183209623	chr1:183209623:C:T	rs185644154	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	183309417	183309418	chr1:183309418:C:A	rs536586	C	A	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	183404904	183404905	chr1:183404905:A:G	rs2788061	A	G	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	183631121	183631122	chr1:183631122:C:T	rs12021522	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	183901934	183901935	chr1:183901935:T:G	rs116961367	T	G	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	184620835	184620836	chr1:184620836:T:C	rs72737731	T	C	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	184638109	184638110	chr1:184638110:A:G	rs146904589	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr1	185155793	185155794	chr1:185155794:C:T	rs77183163	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	185377318	185377319	chr1:185377319:A:C	rs11802271	A	C	A	Msx3.mouse_homeodomain_1	12	1	+	9.77783475602117	12.289143515789993	CCAATTAAAAAAAAATTC
chr1	185528205	185528206	chr1:185528206:C:T	rs10911748	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	186184378	186184379	chr1:186184379:C:T	rs10489752	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	186245379	186245380	chr1:186245380:G:T	rs661045	G	T	g	Msx3.mouse_homeodomain_1	1	1	+	8.199560195088978	10.616066181236608	GGAATCTAAAGCCAATTA
chr1	186440626	186440627	chr1:186440627:C:G	rs58626385	C	G	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr1	187472142	187472143	chr1:187472143:T:C	rs6680154	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	7.846258088822622	0.9387928518986155	TCAATTAATATCCCATGA
chr1	187477345	187477346	chr1:187477346:T:C	rs80142991	T	C	T	Msx3.mouse_homeodomain_1	0	1	+	7.891721409881565	8.715312154141742	TTCATTCTATTCCAATTA
chr1	187566425	187566426	chr1:187566426:C:T	rs10494601	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	10.66580993502646	9.220687271459976	GCAATTAAATACCACTAA
chr1	187625902	187625903	chr1:187625903:T:A	rs57854280	T	A	T	Msx3.mouse_homeodomain_1	13	1	-	10.280108008945724	6.0976995461057575	CTACTTATAATGAAATTA
chr1	187625925	187625926	chr1:187625926:C:T	rs12126359	C	T	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr1	187873433	187873434	chr1:187873434:G:C	rs78659884	G	C	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	187928510	187928511	chr1:187928511:A:T	rs114365568	A	T	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	188166142	188166143	chr1:188166143:A:G	rs2208922	A	G	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr1	188166145	188166146	chr1:188166146:G:C	rs2208923	G	C	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	188170965	188170966	chr1:188170966:A:G	rs17539680	A	G	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr1	188271178	188271179	chr1:188271179:G:C	rs11589015	G	C	G	Msx3.mouse_homeodomain_1	0	1	+	7.449715103485857	7.0823635936112455	GTGCTTACCAGCTAATTA
chr1	188271211	188271212	chr1:188271212:C:G	rs10912298	C	G	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	188651771	188651772	chr1:188651772:C:T	rs10912463	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	188651810	188651811	chr1:188651811:T:C	rs7413517	T	C	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	189605313	189605314	chr1:189605314:A:G	rs155906	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	189860901	189860902	chr1:189860902:G:A	rs2138668	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	190453863	190453864	chr1:190453864:T:A	rs1171034	T	A	A	Msx3.mouse_homeodomain_1	4	1	+	7.547954923026061	0.6429333772899783	ACCATTAACTAGGAATTG
chr1	190739876	190739877	chr1:190739877:G:A	rs79706560	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr1	190740013	190740014	chr1:190740014:C:A	rs12135407	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	190993480	190993481	chr1:190993481:G:A	rs10801000	G	A	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	191155042	191155043	chr1:191155043:G:A	rs10920900	G	A	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr1	191351160	191351161	chr1:191351161:T:C	rs7550126	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	11.221875695182437	11.339579343707431	GCAATTAGTCAACAATTG
chr1	192550734	192550735	chr1:192550735:T:C	rs1323298	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	9.142546153120506	2.2350809161965004	GTTATAATCATGCAATTA
chr1	192633915	192633916	chr1:192633916:C:G	rs6428126	C	G	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	192652605	192652606	chr1:192652606:T:G	rs3923779	T	G	-	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	192724865	192724866	chr1:192724866:C:A	chr1:192724866:C:A	C	A	C	Msx3.mouse_homeodomain_1	9	1	-	6.510936374272457	7.037339094785518	CTCATCAATGGGCCATTA
chr1	192975116	192975117	chr1:192975117:G:A	rs78474753	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr1	193183820	193183821	chr1:193183821:T:C	rs148527808	T	C	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	193221859	193221860	chr1:193221860:G:A	rs140325734	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	193326033	193326034	chr1:193326034:G:A	rs562321627	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	193545036	193545037	chr1:193545037:T:G	rs10921385	T	G	t	Msx3.mouse_homeodomain_1	0	1	-	9.508035252238304	10.249193297528436	ACAATCATTTTCAAATTA
chr1	193960846	193960847	chr1:193960847:T:C	rs642668	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	194044240	194044241	chr1:194044241:G:A	rs1423987366	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr1	194339577	194339578	chr1:194339578:A:G	rs6661290	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	194394794	194394795	chr1:194394795:C:T	rs10801304	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr1	194395530	194395531	chr1:194395531:A:G	rs4433373	A	G	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	194865767	194865768	chr1:194865768:A:G	rs12043557	A	G	a	Msx3.mouse_homeodomain_1	14	1	+	8.720924869276928	4.132830650253778	TCAATGTAAATGCAATTA
chr1	195507470	195507471	chr1:195507471:C:T	rs61816734	C	T	c	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	196787109	196787110	chr1:196787110:A:G	rs370789	A	G	-	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr1	196922771	196922772	chr1:196922772:A:G	rs77221730	A	G	-	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr1	197177013	197177014	chr1:197177014:A:C	rs10429911	A	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	197843748	197843749	chr1:197843749:C:G	rs2201956	C	G	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	198943640	198943641	chr1:198943641:G:T	rs139512297	G	T	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	198943667	198943668	chr1:198943668:G:T	rs11589679	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	8.251621104333886	6.626856226060441	AGACTTGAAATGCAATTA
chr1	199411269	199411270	chr1:199411270:G:A	rs658449	G	A	A	Msx3.mouse_homeodomain_1	8	1	+	14.97481813119214	15.981367464037348	GTAATTAAGTAACAATTA
chr1	200184081	200184082	chr1:200184082:C:G	rs1524161	C	G	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	200291314	200291315	chr1:200291315:T:C	rs7530358	T	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	200360840	200360841	chr1:200360841:T:C	rs2790137	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr1	200372075	200372076	chr1:200372076:C:G	rs2808513	C	G	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr1	200373696	200373697	chr1:200373697:C:A	rs2153280	C	A	A	Msx3.mouse_homeodomain_1	9	1	+	7.832684695031165	9.138914998975494	TTAATTAAACTGCCATAA
chr1	200456668	200456669	chr1:200456669:A:T	rs10218685	A	T	A	Msx3.mouse_homeodomain_1	2	1	+	7.793487584197137	4.638059965984519	TTACTCACTTTGCAATTA
chr1	200481068	200481069	chr1:200481069:C:A	rs7546093	C	A	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	200512627	200512628	chr1:200512628:T:C	rs4335405	T	C	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	200674393	200674394	chr1:200674394:A:G	rs4320808	A	G	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	200755672	200755673	chr1:200755673:G:A	rs73086639	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	200880490	200880491	chr1:200880491:G:T	rs11799920	G	T	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	201334584	201334585	chr1:201334585:A:T	rs5020875	A	T	A	Msx3.mouse_homeodomain_1	0	1	+	9.528349262967343	9.445916563997297	ATAATTACTGGGAAATTA
chr1	201527675	201527676	chr1:201527676:T:C	rs2184458	T	C	C	Msx3.mouse_homeodomain_1	3	1	-	8.5706230021981	4.6011920258292225	CTAATTTTTTTGCGATTA
chr1	201882162	201882163	chr1:201882163:G:A	rs141171945	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	201946589	201946590	chr1:201946590:C:G	rs2820303	C	G	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr1	202282780	202282781	chr1:202282781:G:A	rs111856367	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	202282781	202282782	chr1:202282782:C:T	rs11586832	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	202343674	202343675	chr1:202343675:G:T	rs114312595	G	T	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	202407671	202407672	chr1:202407672:G:T	rs1950010	G	T	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	202532243	202532244	chr1:202532244:G:A	rs975527518	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr1	202766085	202766086	chr1:202766086:C:T	rs12121706	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	203183055	203183056	chr1:203183056:C:T	rs2297839	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr1	203370862	203370863	chr1:203370863:C:T	rs60685283	C	T	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	203680294	203680295	chr1:203680295:T:C	rs7546390	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr1	203711363	203711364	chr1:203711364:A:G	rs6655965	A	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	204041260	204041261	chr1:204041261:G:T	rs10437107	G	T	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr1	204069016	204069017	chr1:204069017:G:A	rs11240656	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	204093279	204093280	chr1:204093280:C:T	rs12034028	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	204293906	204293907	chr1:204293907:G:C	rs4073193	G	C	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	204592047	204592048	chr1:204592048:G:A	chr1:204592048:G:A	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	204592670	204592671	chr1:204592671:T:C	rs141229881	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	205232196	205232197	chr1:205232197:A:C	rs61823972	A	C	A	Msx3.mouse_homeodomain_1	2	1	+	7.939462952048627	5.5568755105779015	GTAGTTAAGCAGCAATTT
chr1	205237492	205237493	chr1:205237493:G:A	chr1:205237493:G:A	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	205433749	205433750	chr1:205433750:C:T	rs540883612	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	205440737	205440738	chr1:205440738:T:G	rs6700948	T	G	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr1	205583735	205583736	chr1:205583736:G:A	rs10494871	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	205751083	205751084	chr1:205751084:C:G	rs12564209	C	G	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr1	206456327	206456328	chr1:206456328:A:G	rs3813982	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.827100763595598	3.2390065445724474	CCAGTTAAAAAAAAATTG
chr1	206554075	206554076	chr1:206554076:C:T	rs35333073	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr1	206576008	206576009	chr1:206576009:A:T	rs116217606	A	T	A	Msx3.mouse_homeodomain_1	9	1	+	7.9119243690963446	7.497783097223263	CCAATCAACAGGTATTTA
chr1	206595697	206595698	chr1:206595698:T:C	rs11584983	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr1	206712233	206712234	chr1:206712234:C:A	rs12127517	C	A	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	207078059	207078060	chr1:207078060:T:C	rs17020241	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	7.49106899286386	7.161128040147761	GCACTTATGCAAGAATTA
chr1	207078067	207078068	chr1:207078068:T:A	rs74148966	T	A	T	Msx3.mouse_homeodomain_1	4	1	+	11.863943861752848	4.958922316016766	AGAATTAAGAAACAATTA
chr1	207313328	207313329	chr1:207313329:T:C	rs59629371	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr1	207337514	207337515	chr1:207337515:G:A	rs28371626	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr1	207390367	207390368	chr1:207390368:T:C	rs982499404	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.300993020284988	4.331562043916111	TTCATTATATACTCATTA
chr1	207405058	207405059	chr1:207405059:T:A	rs756122328	T	A	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr1	207405089	207405090	chr1:207405090:G:A	rs990784800	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	7.405624866858456	6.5820341225982775	CTGATCAAAGTCCACTTA
chr1	207405106	207405107	chr1:207405107:A:C	chr1:207405107:A:C	A	C	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	207948627	207948628	chr1:207948628:A:G	rs114577368	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	208055882	208055883	chr1:208055883:T:G	rs11118979	T	G	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr1	208089027	208089028	chr1:208089028:T:C	rs17011908	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	208107751	208107752	chr1:208107752:T:G	rs12032925	T	G	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	208251512	208251513	chr1:208251513:A:G	rs12135577	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	208272426	208272427	chr1:208272427:A:G	rs79421322	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	7.806989876228347	5.74971569732215	GTTATTTTTGAGCAATTA
chr1	208520954	208520955	chr1:208520955:C:T	rs74362618	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	208525207	208525208	chr1:208525208:C:T	rs540442370	C	T	c	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr1	208525227	208525228	chr1:208525228:G:A	rs17259700	G	A	g	Msx3.mouse_homeodomain_1	11	1	+	7.424321674538924	6.227370649363515	CCCATTGCTTCGTAATTA
chr1	208732633	208732634	chr1:208732634:C:T	rs569623099	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	209171626	209171627	chr1:209171627:T:G	rs11581106	T	G	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr1	209276389	209276390	chr1:209276390:A:G	rs12096704	A	G	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	209505187	209505188	chr1:209505188:A:G	rs4844845	A	G	G	Msx3.mouse_homeodomain_1	12	1	-	9.11836493871953	10.56348760228601	GGAATTAGTATCTGATTA
chr1	209550074	209550075	chr1:209550075:T:G	rs6673693	T	G	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr1	209826444	209826445	chr1:209826445:G:A	rs3753513	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	6.701687813999637	5.256565150433156	ACCATTAGAATGCGATTC
chr1	209850637	209850638	chr1:209850638:C:T	rs11801099	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	210295336	210295337	chr1:210295337:T:G	chr1:210295337:T:G	T	G	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr1	210445744	210445745	chr1:210445745:A:G	rs3765846	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.36682466182344	4.397393685454562	GCAATTGATTTCTATTTA
chr1	210477722	210477723	chr1:210477723:C:T	rs2501897	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	210916264	210916265	chr1:210916265:T:C	rs1875438	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	7.876386300200514	8.724229171081198	ATAATTACCAACGCATTA
chr1	211019451	211019452	chr1:211019452:T:C	rs4951704	T	C	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr1	211133058	211133059	chr1:211133059:T:C	rs12121026	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.519349628724157	3.931255409701009	CCAATAAACTGACAATCA
chr1	211571811	211571812	chr1:211571812:C:G	rs11277	C	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr1	211605707	211605708	chr1:211605708:A:G	rs11582144	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	211912100	211912101	chr1:211912101:T:C	rs17018170	T	C	T	Msx3.mouse_homeodomain_1	2	1	+	9.14527443518185	9.918114611923745	GCTATTACAAATCAATCA
chr1	211928916	211928917	chr1:211928917:T:C	rs544289023	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	7.344790032024519	6.404246039638373	CTAATTAGAAAGCTGTTA
chr1	211947795	211947796	chr1:211947796:A:G	rs75264306	A	G	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	212089874	212089875	chr1:212089875:C:T	rs12089230	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	212291825	212291826	chr1:212291826:G:A	rs113062580	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	212415352	212415353	chr1:212415353:G:A	rs7533689	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr1	212529289	212529290	chr1:212529290:C:G	rs143577983	C	G	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	212587218	212587219	chr1:212587219:C:T	rs17019384	C	T	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr1	212601237	212601238	chr1:212601238:T:C	rs78276076	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	212683378	212683379	chr1:212683379:G:A	rs12754070	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	213512474	213512475	chr1:213512475:C:T	rs433540	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	213623667	213623668	chr1:213623668:A:G	rs17021119	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.70946558349621	3.1213713644730605	CTTATTAGGAACTCATTA
chr1	213830138	213830139	chr1:213830139:G:A	rs111286696	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	11.607803825223336	12.614353158068546	CAAATTAAGCCCCAATTA
chr1	213977101	213977102	chr1:213977102:T:A	rs17712208	T	A	T	Msx3.mouse_homeodomain_1	0	1	+	9.946826145656278	10.029258844626327	TTAATTATTGACTGATTA
chr1	213977138	213977139	chr1:213977139:C:T	rs17021749	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	214262540	214262541	chr1:214262541:G:C	rs80111545	G	C	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr1	214311231	214311232	chr1:214311232:G:A	rs6540820	G	A	A	Msx3.mouse_homeodomain_1	11	1	+	7.5646152777925595	6.367664252617149	TGAATGAATGAGCAATTA
chr1	214332685	214332686	chr1:214332686:A:C	rs78858088	A	C	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	214968156	214968157	chr1:214968157:A:G	rs146205766	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.48274571175386	2.8946514927307083	CCAGTAAAAAACCAATAA
chr1	215131645	215131646	chr1:215131646:A:T	rs4655391	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	8.17113117107494	3.988722708234972	GCATTTATCACTCAATTA
chr1	215488957	215488958	chr1:215488958:C:A	rs75183111	C	A	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	215749418	215749419	chr1:215749419:C:T	rs72740652	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr1	215796673	215796674	chr1:215796674:T:C	rs12404720	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr1	216523879	216523880	chr1:216523880:A:G	rs144112469	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	216831247	216831248	chr1:216831248:C:T	rs1126022	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	7.682909942362294	6.835067071481608	CCGATCAACTGTTAATTA
chr1	217021417	217021418	chr1:217021418:G:A	rs2789551	G	A	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	217027610	217027611	chr1:217027611:C:T	rs6684076	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	217337501	217337502	chr1:217337502:G:C	rs982968	G	C	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	218165855	218165856	chr1:218165856:A:G	rs143261101	A	G	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	218330295	218330296	chr1:218330296:T:G	rs938168489	T	G	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	218466918	218466919	chr1:218466919:G:C	rs2001552	G	C	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	218859138	218859139	chr1:218859139:C:G	rs7553911	C	G	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	218887305	218887306	chr1:218887306:C:T	chr1:218887306:C:T	C	T	c	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr1	218887317	218887318	chr1:218887318:C:T	rs78232080	C	T	c	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	218899072	218899073	chr1:218899073:C:T	rs1338458	C	T	-	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	219175051	219175052	chr1:219175052:A:G	rs184740781	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	7.571285535550646	5.178299793040146	CCAATTCCCTTCCAATCA
chr1	219293723	219293724	chr1:219293724:G:A	rs4846292	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	219444692	219444693	chr1:219444693:A:G	rs12747505	A	G	a	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr1	219730703	219730704	chr1:219730704:G:A	rs2153008	G	A	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	219784673	219784674	chr1:219784674:A:T	rs192692353	A	T	A	Msx3.mouse_homeodomain_1	9	1	+	7.578492236277571	7.164350964404488	ACTATCAACAACCAATTT
chr1	219788177	219788178	chr1:219788178:G:A	rs7525457	G	A	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	219924660	219924661	chr1:219924661:A:G	rs6663638	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr1	219991155	219991156	chr1:219991156:G:A	rs1203948842	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr1	219991162	219991163	chr1:219991163:C:A	rs74139270	C	A	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	220012823	220012824	chr1:220012824:A:G	rs10746395	A	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	220126334	220126335	chr1:220126335:T:C	rs77246949	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	7.517711168809281	5.4604369899030845	TCAATGAGATAACAATTG
chr1	220370505	220370506	chr1:220370506:G:C	rs116534152	G	C	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	221033906	221033907	chr1:221033907:G:T	rs58487387	G	T	g	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	221076342	221076343	chr1:221076343:G:C	rs371262673	G	C	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	221177903	221177904	chr1:221177904:C:T	rs11118663	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr1	221291184	221291185	chr1:221291185:C:T	rs4448522	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	9.749261921386694	8.552310896211285	TCTATCAAATCGCAATTA
chr1	221491500	221491501	chr1:221491501:G:A	rs11118735	G	A	g	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	221640285	221640286	chr1:221640286:A:G	rs4436399	A	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr1	221714997	221714998	chr1:221714998:T:C	rs55920838	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	9.093398389427808	6.65132116249625	CTAATTATACAAAGATTA
chr1	221804480	221804481	chr1:221804481:A:G	rs12041329	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr1	221961523	221961524	chr1:221961524:A:G	rs2790756	A	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr1	221968913	221968914	chr1:221968914:T:C	rs12066449	T	C	t	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr1	222371371	222371372	chr1:222371372:A:G	rs79403508	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	8.907916484465492	7.7981009471419	AATATTAAAAAGCAATTG
chr1	222793067	222793068	chr1:222793068:C:T	rs17163500	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	223142567	223142568	chr1:223142568:A:C	rs5744107	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	7.524921060190454	1.866931808240758	ACAATTGGAAAGCCATTT
chr1	224379301	224379302	chr1:224379302:G:A	rs4654037	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.204092401304436	7.095582846139691	GTTATTTGTATGCAATTA
chr1	224783526	224783527	chr1:224783527:A:G	rs2802559	A	G	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	226379024	226379025	chr1:226379025:A:C	rs907190	A	C	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	226408508	226408509	chr1:226408509:A:T	rs554354052	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr1	226432582	226432583	chr1:226432583:G:T	rs142078129	G	T	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr1	226753176	226753177	chr1:226753177:G:A	rs142038979	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	226820800	226820801	chr1:226820801:C:A	rs12405779	C	A	C	Msx3.mouse_homeodomain_1	1	1	+	8.689344120874079	5.9890547439336155	CCCATAAAAACATAATTA
chr1	227071325	227071326	chr1:227071326:A:G	rs11808884	A	G	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	227213468	227213469	chr1:227213469:T:C	rs1877619	T	C	t	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr1	227252578	227252579	chr1:227252579:G:A	rs2813982	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	228179498	228179499	chr1:228179499:C:T	rs28587961	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr1	228183050	228183051	chr1:228183051:C:T	rs72757812	C	T	N	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr1	229167283	229167284	chr1:229167284:A:G	rs2988735	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	11.943303991173426	7.973873014804549	CCAATTAGGAAGTAATTG
chr1	229245974	229245975	chr1:229245975:C:T	rs1605882	C	T	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	230092044	230092045	chr1:230092045:T:C	rs140388786	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr1	230171802	230171803	chr1:230171803:A:C	rs6541300	A	C	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	230171803	230171804	chr1:230171804:G:A	rs6541301	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr1	230211620	230211621	chr1:230211621:C:A	rs4846931	C	A	A	Msx3.mouse_homeodomain_1	12	1	+	8.140108737230516	5.628799977461692	CATCTTAAAAAACAATTA
chr1	230283405	230283406	chr1:230283406:C:T	rs6689887	C	T	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	230385284	230385285	chr1:230385285:C:A	rs11806158	C	A	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	230398491	230398492	chr1:230398492:A:G	rs73102039	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr1	230519371	230519372	chr1:230519372:T:C	rs2530359	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr1	230825622	230825623	chr1:230825623:A:G	rs722732	A	G	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	230974666	230974667	chr1:230974667:T:C	rs7413309	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	7.317039471215771	5.2597652923095755	ACAGTTACATACCATTTA
chr1	230986393	230986394	chr1:230986394:C:T	rs35824352	C	T	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	231183276	231183277	chr1:231183277:T:C	rs112705228	T	C	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	231358069	231358070	chr1:231358070:C:T	rs114148441	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	231359569	231359570	chr1:231359570:A:G	rs999010	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	9.766512599098668	3.6679669192295368	AAAATTAACGTGAAATTA
chr1	231426745	231426746	chr1:231426746:G:C	rs12757362	G	C	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr1	231856350	231856351	chr1:231856351:C:T	rs1079344	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr1	231856377	231856378	chr1:231856378:G:A	rs4546903	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	8.040538340439713	6.843587315264307	CCCATTAAAATGCAGTTG
chr1	231953617	231953618	chr1:231953618:A:G	rs56212500	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	8.28473828196292	5.159789128369065	AAAATTAACTCCCACTTA
chr1	232047297	232047298	chr1:232047298:G:T	rs370307984	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	7.74301052183153	5.042721144891065	TCAATAAGGAAGAGATTA
chr1	232125338	232125339	chr1:232125339:C:T	rs11122427	C	T	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr1	232263581	232263582	chr1:232263582:A:G	rs141510295	A	G	a	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr1	232307673	232307674	chr1:232307674:G:C	rs613833	G	C	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr1	232371869	232371870	chr1:232371870:G:A	rs3131811	G	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	232384855	232384856	chr1:232384856:C:A	rs12086929	C	A	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr1	232590322	232590323	chr1:232590323:A:G	rs16857720	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr1	233632317	233632318	chr1:233632318:A:T	rs141001668	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	8.706742256135694	2.627828836777836	CTTATTAGCTTCAAATTA
chr1	233904221	233904222	chr1:233904222:G:T	rs12087906	G	T	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr1	234124339	234124340	chr1:234124340:A:G	rs6683325	A	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr1	234530504	234530505	chr1:234530505:A:G	rs271741	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr1	234590265	234590266	chr1:234590266:A:C	rs744487	A	C	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	234823355	234823356	chr1:234823356:C:T	rs58256916	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	7.670705675830098	8.562794707901347	TCAATTAGGCGGAAATTG
chr1	234902332	234902333	chr1:234902333:A:G	rs4920197	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr1	234908222	234908223	chr1:234908223:G:A	rs78364452	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	234955777	234955778	chr1:234955778:G:T	rs2674002	G	T	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr1	234955783	234955784	chr1:234955784:A:G	rs148841178	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr1	234956048	234956049	chr1:234956049:C:G	rs869668	C	G	C	Msx3.mouse_homeodomain_1	0	1	+	8.812151542784818	9.179503052659431	CTGATTATCTGCAAATTA
chr1	235430866	235430867	chr1:235430867:A:G	rs2291687	A	G	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr1	235947985	235947986	chr1:235947986:C:T	rs114702325	C	T	c	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr1	236471964	236471965	chr1:236471965:A:C	rs1389470364	A	C	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr1	236734566	236734567	chr1:236734567:T:C	rs16834301	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr1	237258783	237258784	chr1:237258784:C:G	rs1421207	C	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr1	237323700	237323701	chr1:237323701:G:C	rs2787105	G	C	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr1	237360760	237360761	chr1:237360761:A:G	rs7545575	A	G	G	Msx3.mouse_homeodomain_1	0	1	-	8.44637669335015	9.26996743761033	TCCATGAATGAGCAATTA
chr1	237941327	237941328	chr1:237941328:A:G	rs114783979	A	G	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr1	238265326	238265327	chr1:238265327:A:C	rs78463737	A	C	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr1	238329884	238329885	chr1:238329885:G:T	chr1:238329885:G:T	G	T	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr1	238371098	238371099	chr1:238371099:G:C	rs75352561	G	C	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	239164738	239164739	chr1:239164739:G:C	rs889953742	G	C	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr1	239320045	239320046	chr1:239320046:T:C	rs12042595	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	12.13980195750326	9.697724730571704	ATGATTAACTTGCAATTA
chr1	239596384	239596385	chr1:239596385:A:G	rs55776075	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr1	239795445	239795446	chr1:239795446:A:G	rs73127372	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr1	239986947	239986948	chr1:239986948:T:C	rs12723333	T	C	t	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr1	239998420	239998421	chr1:239998421:T:C	rs7512434	T	C	c	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	240288933	240288934	chr1:240288934:C:T	rs60909204	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	240444748	240444749	chr1:240444749:G:A	rs2356388	G	A	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr1	240705854	240705855	chr1:240705855:G:A	rs572839931	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr1	241125577	241125578	chr1:241125578:G:T	rs4131804	G	T	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	241349662	241349663	chr1:241349663:T:C	rs4660068	T	C	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr1	241696705	241696706	chr1:241696706:C:T	rs115024793	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.973910521812474	10.050501692748952	CTCATTATACGCAAATTA
chr1	241950595	241950596	chr1:241950596:A:G	rs28544076	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	10.064273294539827	9.12372930215368	TCAATTACTAAACACTTA
chr1	242186039	242186040	chr1:242186040:T:C	rs182358689	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	9.739188708047351	9.856892356572345	TCAATTTCTTGGCAATTA
chr1	242255947	242255948	chr1:242255948:C:T	rs316915	C	T	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr1	242376462	242376463	chr1:242376463:T:A	rs72763077	T	A	T	Msx3.mouse_homeodomain_1	14	1	+	8.804077310860617	13.130837662210173	ACAATTACTTACTATTTA
chr1	243315710	243315711	chr1:243315711:C:T	rs141522436	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr1	243781236	243781237	chr1:243781237:T:G	chr1:243781237:T:G	T	G	T	Msx3.mouse_homeodomain_1	14	1	-	9.183671671480624	5.622692633226436	ACCATTAAAAAAAGATTA
chr1	243792263	243792264	chr1:243792264:A:G	rs76397969	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	8.234319498369441	7.227770165524233	ACCATTAAATTTCTATTA
chr1	244759605	244759606	chr1:244759606:G:T	rs78186644	G	T	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	244843524	244843525	chr1:244843525:A:G	rs1053700	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	244865102	244865103	chr1:244865103:C:G	rs529073921	C	G	C	Msx3.mouse_homeodomain_1	0	1	-	7.8648763261017915	7.497524816227182	GAACTTAAAATCCAATTC
chr1	244879741	244879742	chr1:244879742:T:C	rs72769457	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr1	244920951	244920952	chr1:244920952:A:G	rs2172955	A	G	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr1	244969332	244969333	chr1:244969333:T:C	rs183935990	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr1	244982366	244982367	chr1:244982367:A:T	rs12143677	A	T	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr1	245388722	245388723	chr1:245388723:A:G	rs491725	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	245602416	245602417	chr1:245602417:C:G	rs1771526	C	G	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr1	245658687	245658688	chr1:245658688:A:G	rs7539691	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr1	245805708	245805709	chr1:245805709:G:A	rs2817510	G	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr1	246003240	246003241	chr1:246003241:T:C	rs12563645	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	7.502461600006865	4.377512446413011	CCAATTCACAGGTCATTA
chr1	246043666	246043667	chr1:246043667:T:C	rs7536171	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr1	246043675	246043676	chr1:246043676:A:G	rs7533411	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr1	246052423	246052424	chr1:246052424:C:G	rs10458426	C	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr1	246108085	246108086	chr1:246108086:C:G	rs10802333	C	G	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr1	246497696	246497697	chr1:246497697:T:A	rs6657580	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	9.06947109945172	4.742710748102166	CTAATTAAAAGAAAATTT
chr1	246597341	246597342	chr1:246597342:C:A	rs73150010	C	A	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr1	246666439	246666440	chr1:246666440:T:C	rs1135644	T	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr1	246827856	246827857	chr1:246827857:T:G	rs10924846	T	G	G	Msx3.mouse_homeodomain_1	15	1	+	7.0278211860875865	0.12035594916358106	ACACTTAAGATCCCATCA
chr1	246831603	246831604	chr1:246831604:A:G	rs10924852	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr1	247078020	247078021	chr1:247078021:T:C	rs6701582	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr1	247176727	247176728	chr1:247176728:T:C	rs7521306	T	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr1	247190480	247190481	chr1:247190481:T:C	rs12071728	T	C	N	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr1	247532124	247532125	chr1:247532125:C:G	rs34220133	C	G	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr1	247565381	247565382	chr1:247565382:A:G	rs1176064	A	G	G	Msx3.mouse_homeodomain_1	5	1	-	8.67890727642033	6.28592153390983	GAAATTGACTACCAATTT
chr1	248251657	248251658	chr1:248251658:A:G	rs7546964	A	G	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr1	248393250	248393251	chr1:248393251:C:A	rs28734988	C	A	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr1	248793760	248793761	chr1:248793761:G:C	rs6604748	G	C	N	Msx3.mouse_homeodomain_1	11	1	+	12.218132699580426	12.303598240290686	GCAATCAGCCTGCAATTA
chr10	267363	267364	chr10:267364:T:C	rs4880567	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.302138829144933	4.332707852776057	CCTATTAATGGGCACTTA
chr10	288122	288123	chr10:288123:C:T	rs3131998	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr10	306484	306485	chr10:306485:C:T	rs1250506125	C	T	C	Msx3.mouse_homeodomain_1	9	1	-	13.299666064253216	14.24021005663936	CCAATTATCGTCTAATTA
chr10	683794	683795	chr10:683795:C:T	rs79919851	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr10	683821	683822	chr10:683822:A:C	rs1890677	A	C	C	Msx3.mouse_homeodomain_1	14	1	+	7.108529554600511	3.5475505163463232	CCCATAAATCACTGATTA
chr10	727998	727999	chr10:727999:C:T	rs1409399	C	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr10	1050597	1050598	chr10:1050598:A:C	rs12359250	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	12.421185912460913	6.763196660511215	ATAATTAAGTAATAATTA
chr10	1198473	1198474	chr10:1198474:G:A	rs1392827	G	A	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr10	1309583	1309584	chr10:1309584:T:C	rs883793	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	1361877	1361878	chr10:1361878:C:T	rs12774968	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.953540191298028	7.756589166122619	ATAGTTAAAAAGCACTTA
chr10	1367746	1367747	chr10:1367747:C:T	rs10794740	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr10	1499336	1499337	chr10:1499337:C:G	rs111170558	C	G	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr10	1499461	1499462	chr10:1499462:C:T	rs11817863	C	T	c	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	1655481	1655482	chr10:1655482:A:G	rs7904615	A	G	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	1737512	1737513	chr10:1737513:A:C	rs903650002	A	C	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr10	2045457	2045458	chr10:2045458:G:C	rs10794840	G	C	C	Msx3.mouse_homeodomain_1	12	1	+	8.709210012878241	12.208593031494399	TTAATTAAAAATGAATTG
chr10	2214044	2214045	chr10:2214045:A:G	rs6560804	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	2247920	2247921	chr10:2247921:T:C	rs17819538	T	C	c	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr10	2631993	2631994	chr10:2631994:C:T	rs111672368	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr10	2826075	2826076	chr10:2826076:A:G	rs868738598	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	7.365566815291326	4.797407218108124	CCAATTTACTCCTCATTA
chr10	2929212	2929213	chr10:2929213:C:T	rs1875173	C	T	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr10	3348127	3348128	chr10:3348128:C:T	rs1337381	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	3426924	3426925	chr10:3426925:A:G	rs55964744	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	9.872097698147314	2.9646324612233093	CTAATTAAAAGAAAATTG
chr10	3455756	3455757	chr10:3455757:T:A	rs77943245	T	A	T	Msx3.mouse_homeodomain_1	1	1	+	11.763511056421471	9.91106455036169	GTAGTTAATTTCCAATTA
chr10	3690264	3690265	chr10:3690265:T:A	rs78633935	T	A	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr10	3722412	3722413	chr10:3722413:T:C	rs17228197	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	6.915381854020498	0.8168361741513652	TGCATTGCAGACCAATTA
chr10	3780995	3780996	chr10:3780996:C:G	rs12414935	C	G	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr10	3787803	3787804	chr10:3787804:G:A	rs11252094	G	A	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr10	3821557	3821558	chr10:3821558:G:C	rs7896289	G	C	G	Msx3.mouse_homeodomain_1	16	1	-	9.680871174487194	7.7322875519717185	GTAATCATCTAGCAATCA
chr10	3854158	3854159	chr10:3854159:A:G	rs10795079	A	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	3891079	3891080	chr10:3891080:T:C	rs112421645	T	C	T	Msx3.mouse_homeodomain_1	12	1	+	10.932185650086069	12.377308313652552	CTCATTATATGCTAATTA
chr10	3892653	3892654	chr10:3892654:G:A	rs76168616	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	6.080689905119292	4.370459486135584	CCAGTTAGCAACCAAATA
chr10	3902703	3902704	chr10:3902704:A:T	rs77453722	A	T	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr10	3907900	3907901	chr10:3907901:A:G	rs4457649	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr10	3926520	3926521	chr10:3926521:A:C	rs7086533	A	C	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr10	3971729	3971730	chr10:3971730:C:T	rs10904151	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr10	3977175	3977176	chr10:3977176:C:G	rs7094696	C	G	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	3987796	3987797	chr10:3987797:T:C	rs1008078991	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	10.898082181322703	6.309987962299553	ACAATCAAACCACAATTA
chr10	3987804	3987805	chr10:3987805:T:G	rs556895422	T	G	T	Msx3.mouse_homeodomain_1	6	1	-	10.898082181322703	6.653066374850542	ACAATCAAACCACAATTA
chr10	4024358	4024359	chr10:4024359:C:T	rs11252280	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr10	4044274	4044275	chr10:4044275:G:A	rs80025211	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr10	4047080	4047081	chr10:4047081:G:A	rs11252295	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	4704320	4704321	chr10:4704321:C:A	rs10904322	C	A	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr10	4852155	4852156	chr10:4852156:G:C	rs77898579	G	C	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	5169011	5169012	chr10:5169012:T:C	rs11511661	T	C	.	Msx3.mouse_homeodomain_1	4	1	+	10.58664762955694	4.488101949687804	TCAATTGAGGGACAATTA
chr10	5285513	5285514	chr10:5285514:G:A	rs17155745	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	9.642191885784065	10.582735878170212	ACAATTACTGAACAATCA
chr10	5514707	5514708	chr10:5514708:T:A	rs12359191	T	A	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr10	5533962	5533963	chr10:5533963:G:A	rs559638094	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr10	5549589	5549590	chr10:5549590:A:G	rs7085134	A	G	G	Msx3.mouse_homeodomain_1	8	1	+	9.764815831173124	8.758266498327917	CGAATTAAATTTAAATTA
chr10	5643724	5643725	chr10:5643725:A:C	chr10:5643725:A:C	A	C	a	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr10	5645297	5645298	chr10:5645298:A:T	rs7088072	A	T	-	Msx3.mouse_homeodomain_1	13	1	+	8.757536174862777	4.575127712022812	AAAATTAAACAACAATTT
chr10	6218753	6218754	chr10:6218754:T:G	rs11257349	T	G	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr10	6218754	6218755	chr10:6218755:G:T	rs139342879	G	T	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr10	6218803	6218804	chr10:6218804:T:C	rs192798787	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr10	6296728	6296729	chr10:6296729:T:G	rs7921642	T	G	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr10	6313136	6313137	chr10:6313137:T:C	rs7082714	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	6467072	6467073	chr10:6467073:G:A	rs17300888	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr10	6602711	6602712	chr10:6602712:A:G	rs12248647	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr10	7076118	7076119	chr10:7076119:C:T	rs77095939	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr10	7484998	7484999	chr10:7484999:C:T	chr10:7484999:C:T	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr10	7562391	7562392	chr10:7562392:T:C	rs10795550	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	6.887016051028719	0.7884703711595864	CCCATTAGAAAGAGATCA
chr10	7975859	7975860	chr10:7975860:G:A	rs3898015	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr10	8152787	8152788	chr10:8152788:T:C	rs10905291	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr10	8329530	8329531	chr10:8329531:A:G	rs10466292	A	G	G	Msx3.mouse_homeodomain_1	9	1	-	8.624378626762653	7.732289594691404	GCAATTATTTCATAATCA
chr10	8413955	8413956	chr10:8413956:T:C	rs2454057	T	C	T	Msx3.mouse_homeodomain_1	6	1	+	8.915276021665225	8.262542422305582	TCACTTTAGGACCAATTA
chr10	8416353	8416354	chr10:8416354:C:T	rs1361153	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr10	8712689	8712690	chr10:8712690:G:A	rs57628707	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	8899210	8899211	chr10:8899211:T:C	rs7897000	T	C	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	9037712	9037713	chr10:9037713:A:C	rs2760196	A	C	C	Msx3.mouse_homeodomain_1	1	1	-	8.956886471984422	6.540380485836793	GTATTTACAATTCAATTA
chr10	9175610	9175611	chr10:9175611:C:T	rs1149954	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	9.443012063811025	8.246061038635617	CAGATTATATTGTAATTA
chr10	9261066	9261067	chr10:9261067:A:G	rs11256133	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	9627177	9627178	chr10:9627178:A:C	rs12260571	A	C	t	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr10	10014891	10014892	chr10:10014892:C:T	rs2398104	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr10	10542770	10542771	chr10:10542771:G:T	rs1324318	G	T	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr10	10701992	10701993	chr10:10701993:C:A	rs1998432	C	A	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr10	10793256	10793257	chr10:10793257:T:C	rs11256836	T	C	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr10	11145232	11145233	chr10:11145233:C:T	rs80297721	C	T	c	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	11145259	11145260	chr10:11145260:A:G	rs140048799	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	12.368696426924032	12.038755474207935	TCACTTATAGAGCAATTA
chr10	11612457	11612458	chr10:11612458:A:C	rs117787139	A	C	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr10	11664893	11664894	chr10:11664894:T:C	rs12762594	T	C	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr10	11671298	11671299	chr10:11671299:A:C	rs8181400	A	C	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr10	11705915	11705916	chr10:11705916:A:G	rs58453382	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	9.811308259593645	3.7127625797245125	CCACTAATGATGCAATTA
chr10	11738292	11738293	chr10:11738293:T:C	rs10752227	T	C	t	Msx3.mouse_homeodomain_1	15	1	+	8.96018836182423	2.0527231249002242	CTAGTAATATAGCAATTA
chr10	11738297	11738298	chr10:11738298:A:G	rs10795882	A	G	a	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	12062988	12062989	chr10:12062989:C:T	rs78114187	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr10	12194746	12194747	chr10:12194747:T:C	rs17151385	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	8.712189882988302	9.560032753868985	CTAATTTAAAACTACTTA
chr10	12194770	12194771	chr10:12194771:C:G	rs75178594	C	G	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr10	12194773	12194774	chr10:12194774:G:A	rs3758379	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	12214559	12214560	chr10:12214560:A:G	rs2399796	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr10	12220556	12220557	chr10:12220557:G:A	rs117987194	G	A	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr10	12353832	12353833	chr10:12353833:G:C	rs2801500	G	C	G	Msx3.mouse_homeodomain_1	2	1	-	8.729975995392998	8.595694808926645	GCCATTACATAACATTTA
chr10	12451984	12451985	chr10:12451985:C:T	rs61847420	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr10	12564465	12564466	chr10:12564466:T:C	rs6602598	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr10	12937865	12937866	chr10:12937866:C:T	rs10906259	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr10	13378124	13378125	chr10:13378125:G:C	rs17153169	G	C	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr10	13378136	13378137	chr10:13378137:T:C	rs17153175	T	C	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr10	13475301	13475302	chr10:13475302:T:C	rs4750368	T	C	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr10	13698455	13698456	chr10:13698456:C:G	rs3814664	C	G	G	Msx3.mouse_homeodomain_1	12	1	+	6.497304376533648	2.9979213579174897	CCCATCAGAGATCAATCA
chr10	13698465	13698466	chr10:13698466:G:A	rs78103027	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr10	13802162	13802163	chr10:13802163:A:G	rs11591466	A	G	g	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr10	13871045	13871046	chr10:13871046:C:G	rs7099934	C	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	13886894	13886895	chr10:13886895:C:T	rs113854497	C	T	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	13977518	13977519	chr10:13977519:G:A	rs1599414	G	A	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr10	14060985	14060986	chr10:14060986:T:G	rs4750459	T	G	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr10	14137779	14137780	chr10:14137780:T:C	rs4750471	T	C	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr10	14555552	14555553	chr10:14555553:G:C	rs10906696	G	C	C	Msx3.mouse_homeodomain_1	0	1	+	7.632186141247767	7.264834631373156	GCCATTAGCAAGAAATAA
chr10	14658158	14658159	chr10:14658159:A:G	rs10906733	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	14734323	14734324	chr10:14734324:G:T	rs913292	G	T	T	Msx3.mouse_homeodomain_1	11	1	+	9.660120637523491	8.035355759250042	CCAATTATATTGCCCTTA
chr10	15143212	15143213	chr10:15143213:A:G	rs10906836	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr10	15606104	15606105	chr10:15606105:G:A	rs2282384	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr10	15689185	15689186	chr10:15689186:G:A	rs4748194	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.306850589997762	7.198341034833018	GCATTTAAAAAGTACTTA
chr10	16134899	16134900	chr10:16134900:C:T	rs4748258	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr10	16156010	16156011	chr10:16156011:G:T	rs11253826	G	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr10	16232905	16232906	chr10:16232906:T:C	rs7092247	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	16232953	16232954	chr10:16232954:G:T	rs7074433	G	T	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr10	16518738	16518739	chr10:16518739:A:C	rs11254045	A	C	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	16528164	16528165	chr10:16528165:C:G	rs11254056	C	G	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr10	16641594	16641595	chr10:16641595:C:T	rs11254120	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr10	16793352	16793353	chr10:16793353:A:G	rs17139206	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr10	16892170	16892171	chr10:16892171:C:T	rs2669149	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr10	17005864	17005865	chr10:17005865:G:T	rs77520345	G	T	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr10	17009635	17009636	chr10:17009636:T:C	rs148441147	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	8.095332336717927	1.9967866568487918	TCACTTAAGGAGCATTTA
chr10	17012773	17012774	chr10:17012774:G:C	rs112600061	G	C	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr10	17033573	17033574	chr10:17033574:A:C	rs11254336	A	C	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	17087343	17087344	chr10:17087344:A:G	rs1907365	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr10	17202307	17202308	chr10:17202308:G:T	rs17466418	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	7.936018831757308	5.424710071988483	GCACTTAAAGACCCATAA
chr10	17377838	17377839	chr10:17377839:C:T	rs10752081	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.286123097427788	7.089172072252378	GCGATAAAAAAGTAATTT
chr10	17384474	17384475	chr10:17384475:A:C	rs2770197	A	C	A	Msx3.mouse_homeodomain_1	5	1	-	7.945695777834659	3.503114000367495	GTTATTAAAGACAAATCA
chr10	17546665	17546666	chr10:17546666:T:A	rs10795494	T	A	a	Msx3.mouse_homeodomain_1	15	1	+	10.25274709597875	4.173833676620893	ACAATTAAAAAAAAATTT
chr10	17592752	17592753	chr10:17592753:A:C	rs4748388	A	C	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr10	17817602	17817603	chr10:17817603:T:C	rs937446736	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	18143555	18143556	chr10:18143556:T:A	rs10764320	T	A	T	Msx3.mouse_homeodomain_1	12	1	-	7.767168492891332	8.833354589093673	GCAATTCAAGTCAAATTG
chr10	18238937	18238938	chr10:18238938:A:G	rs1779230	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	8.142760145849186	5.017810992255333	GTAATTAAAAAGCAAATT
chr10	18238940	18238941	chr10:18238941:T:C	rs7898536	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	8.142760145849186	6.08548596694299	GTAATTAAAAAGCAAATT
chr10	18261957	18261958	chr10:18261958:T:C	rs12261375	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	12.877865133151666	8.90843415678279	GCAATTAGCATCCAATCA
chr10	18501928	18501929	chr10:18501929:T:C	rs10741083	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr10	18501976	18501977	chr10:18501977:T:G	rs61839303	T	G	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	18546424	18546425	chr10:18546425:A:G	rs10828879	A	G	a	Msx3.mouse_homeodomain_1	16	1	-	6.260416276442016	3.135467122848163	GCAATTTGAGTCCACTTG
chr10	18610564	18610565	chr10:18610565:T:C	rs146721333	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr10	18660319	18660320	chr10:18660320:C:G	rs193123199	C	G	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr10	18850778	18850779	chr10:18850779:C:G	rs1590830	C	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	18940057	18940058	chr10:18940058:T:G	rs10763751	T	G	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr10	19021162	19021163	chr10:19021163:A:C	rs12784603	A	C	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	19184870	19184871	chr10:19184871:A:G	rs78667503	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	19391047	19391048	chr10:19391048:A:G	rs4394735	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr10	19480580	19480581	chr10:19480581:A:G	rs10764037	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	19728922	19728923	chr10:19728923:C:A	rs7100283	C	A	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	19945422	19945423	chr10:19945423:T:G	rs73603678	T	G	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr10	19987108	19987109	chr10:19987109:G:A	rs112380616	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr10	20001579	20001580	chr10:20001580:G:C	rs12767775	G	C	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr10	20148165	20148166	chr10:20148166:T:C	rs4301699	T	C	C	Msx3.mouse_homeodomain_1	8	1	+	12.742225528112392	12.85992917663739	CTAATTATTGAGTAATTA
chr10	20186280	20186281	chr10:20186281:G:A	rs2358871	G	A	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr10	20428859	20428860	chr10:20428860:C:T	rs10508626	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr10	20542849	20542850	chr10:20542850:T:G	rs7092233	T	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr10	20660895	20660896	chr10:20660896:A:G	rs2147871	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr10	20688889	20688890	chr10:20688890:G:A	rs10764264	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr10	20698018	20698019	chr10:20698019:A:T	rs7920090	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	8.443741687580289	2.3648282682224324	CTAATCAGTAACCATTTA
chr10	20777010	20777011	chr10:20777011:A:G	rs76735239	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	20788670	20788671	chr10:20788671:T:C	rs10828132	T	C	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr10	20788705	20788706	chr10:20788706:A:C	rs11012339	A	C	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	20924189	20924190	chr10:20924190:C:T	rs72793932	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr10	21270241	21270242	chr10:21270242:T:C	rs58335572	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr10	21466536	21466537	chr10:21466537:C:T	rs35708372	C	T	c	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	21530894	21530895	chr10:21530895:G:A	rs12253527	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr10	22805898	22805899	chr10:22805899:G:C	rs946961	G	C	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr10	22821398	22821399	chr10:22821399:T:C	rs10764345	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.853975693445093	3.8845447170762166	ACTATTATAGAACAATCA
chr10	22823843	22823844	chr10:22823844:T:C	rs78784059	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr10	22987870	22987871	chr10:22987871:G:A	rs7084760	G	A	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr10	23354997	23354998	chr10:23354998:C:T	rs57556934	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr10	23399612	23399613	chr10:23399613:T:A	rs10458698	T	A	t	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr10	23614452	23614453	chr10:23614453:A:T	rs7100887	A	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	23961144	23961145	chr10:23961145:G:A	rs4415652	G	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr10	23961150	23961151	chr10:23961151:C:T	rs4466724	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	24153677	24153678	chr10:24153678:A:C	rs74588276	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	8.217739908645921	3.1442071325365926	TCAATAACAATGCATTTA
chr10	24303834	24303835	chr10:24303835:G:A	rs220366	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr10	24621825	24621826	chr10:24621826:G:A	rs4262623	G	A	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	24650621	24650622	chr10:24650622:A:G	rs56214051	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr10	24726899	24726900	chr10:24726900:A:T	rs530814741	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	10.146062270388198	4.067148851030341	CTAATTAAAAAAAAATTT
chr10	24930442	24930443	chr10:24930443:G:A	rs117154491	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr10	24930459	24930460	chr10:24930460:G:A	rs7910241	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	8.734558219935195	7.961718043193298	TCCATAAATAGACAATTA
chr10	24958543	24958544	chr10:24958544:A:G	rs274302	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	10.57709839701079	6.607667420641913	CTCATTAGTATTCAATTA
chr10	24958569	24958570	chr10:24958570:C:T	rs151234926	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	25603782	25603783	chr10:25603783:A:T	rs61400980	A	T	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr10	25816545	25816546	chr10:25816546:T:C	rs751006	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr10	25816580	25816581	chr10:25816581:T:C	rs11014763	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	25904397	25904398	chr10:25904398:T:C	rs2368116	T	C	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr10	26021540	26021541	chr10:26021541:C:T	rs35010955	C	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	26055940	26055941	chr10:26055941:G:A	rs72791168	G	A	g	Msx3.mouse_homeodomain_1	9	1	+	8.243085493913021	9.183629486299168	GCTATCAAAGAAAAATTA
chr10	26309953	26309954	chr10:26309954:G:A	rs60698538	G	A	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	26380110	26380111	chr10:26380111:G:T	rs2992284	G	T	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr10	26393970	26393971	chr10:26393971:A:G	rs12413535	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	26445892	26445893	chr10:26445893:G:C	rs10764616	G	C	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr10	26574776	26574777	chr10:26574777:G:A	rs111793271	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr10	26787749	26787750	chr10:26787750:A:G	rs11015286	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	8.275636860856867	7.269087528011659	GACATTAAAAAACAATAA
chr10	27234327	27234328	chr10:27234328:A:G	rs2800394	A	G	N	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr10	27238889	27238890	chr10:27238890:T:C	rs2780665	T	C	N	Msx3.mouse_homeodomain_1	17	1	-	8.801661664882928	6.2335020676997255	ATATTTAGAAAGTAATTA
chr10	27239623	27239624	chr10:27239624:C:T	rs484172	C	T	c	Msx3.mouse_homeodomain_1	10	1	+	7.596060517083223	8.640032816956936	GAAATTACTTCACAATTG
chr10	27243648	27243649	chr10:27243649:C:T	chr10:27243649:C:T	C	T	c	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	27622741	27622742	chr10:27622742:C:A	rs11015914	C	A	A	Msx3.mouse_homeodomain_1	8	1	-	7.585732080504537	7.5550109401921945	GAAATTGAGGAACAATTG
chr10	27635720	27635721	chr10:27635721:T:C	rs1168589	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	13.249861718229386	7.151316038360254	CCAATTGCAAGCCAATTA
chr10	27696345	27696346	chr10:27696346:A:G	rs11015952	A	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	27878419	27878420	chr10:27878420:T:A	rs12780619	T	A	T	Msx3.mouse_homeodomain_1	8	1	-	6.980916233480738	5.9436457603231885	GGAATTTCATACCCATTA
chr10	28242939	28242940	chr10:28242940:T:C	rs80030224	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr10	28386226	28386227	chr10:28386227:G:C	rs118126651	G	C	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr10	28784939	28784940	chr10:28784940:C:T	rs1761976	C	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr10	28949598	28949599	chr10:28949599:G:T	rs7895806	G	T	G	Msx3.mouse_homeodomain_1	7	1	+	7.498434114835473	7.548304058170408	CACATTAGCGGGTAATTA
chr10	28976297	28976298	chr10:28976298:C:T	rs932980945	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	29437284	29437285	chr10:29437285:T:G	rs11007582	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	6.940263469107283	0.03279823218327671	CCAATTATTAGGCAGTTT
chr10	29496796	29496797	chr10:29496797:G:A	rs7920339	G	A	g	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr10	29496833	29496834	chr10:29496834:G:A	rs7920357	G	A	a	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	29635114	29635115	chr10:29635115:A:G	rs11007676	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.606346556231045	5.018252337207896	CTACTTCAAATGCAATTA
chr10	29728873	29728874	chr10:29728874:G:A	rs7069798	G	A	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr10	29837268	29837269	chr10:29837269:C:T	rs3006547	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	8.251243728957071	10.30851790786327	CCCATTATAAAACGATCA
chr10	30111466	30111467	chr10:30111467:T:C	rs12266240	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr10	30404637	30404638	chr10:30404638:G:C	rs10763786	G	C	.	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr10	30466905	30466906	chr10:30466906:G:C	rs75925933	G	C	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr10	30562912	30562913	chr10:30562913:T:A	rs1969137	T	A	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr10	30705030	30705031	chr10:30705031:T:C	rs3894627	T	C	t	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr10	30749492	30749493	chr10:30749493:C:T	rs558939035	C	T	c	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr10	30873377	30873378	chr10:30873378:T:C	rs2934629	T	C	t	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr10	30937489	30937490	chr10:30937490:T:G	rs2934649	T	G	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr10	30987047	30987048	chr10:30987048:A:C	rs2994647	A	C	A	Msx3.mouse_homeodomain_1	3	1	+	7.5357230197834	4.655548655250502	GCAATATATTACCAATCA
chr10	30987617	30987618	chr10:30987618:T:C	rs7893715	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	31025539	31025540	chr10:31025540:G:T	rs1771645	G	T	T	Msx3.mouse_homeodomain_1	1	1	-	9.234988141355451	6.53469876441499	TCAATTGCAAAGCTATTA
chr10	31204207	31204208	chr10:31204208:T:G	rs936572806	T	G	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr10	31768315	31768316	chr10:31768316:C:T	rs2778664	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.57149177403454	7.126369110468058	ACAATTATTATCCCATTT
chr10	31977713	31977714	chr10:31977714:A:G	rs1755072	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	31977820	31977821	chr10:31977821:C:A	rs12778455	C	A	C	Msx3.mouse_homeodomain_1	6	1	-	7.252203014076001	6.101998033895039	CATATTGGCATGCAATTA
chr10	32031632	32031633	chr10:32031633:G:A	rs1251387	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr10	32530580	32530581	chr10:32530581:G:A	rs10827073	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	7.77071286446437	6.922869993583687	CCAATTATATACCATTTC
chr10	33074125	33074126	chr10:33074126:G:A	rs7896735	G	A	G	Msx3.mouse_homeodomain_1	3	1	-	7.774812609304368	5.527636633689175	GCACTTTAATTCCAATTT
chr10	33178721	33178722	chr10:33178722:G:A	rs13324	G	A	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr10	33348141	33348142	chr10:33348142:G:A	rs78355763	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr10	33506551	33506552	chr10:33506552:T:G	rs2785245	T	G	T	Msx3.mouse_homeodomain_1	6	1	-	9.295336735532306	5.0503209290601445	CCCATCAAATGGAAATTA
chr10	34003685	34003686	chr10:34003686:C:T	rs868358224	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	8.987730300216533	9.879819332287784	GCAATTGGGCGGAAATTA
chr10	34019018	34019019	chr10:34019019:T:C	rs161417	T	C	t	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr10	34143542	34143543	chr10:34143543:C:T	rs2645230	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	34152448	34152449	chr10:34152449:T:C	rs7909110	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	9.492303856176047	10.600813411340791	ACCATTATGTTCCAATTG
chr10	34274996	34274997	chr10:34274997:A:G	rs658885	A	G	a	Msx3.mouse_homeodomain_1	9	1	-	9.527979637796172	8.635890605724924	GAAATTGACTGCTAATTA
chr10	34577145	34577146	chr10:34577146:A:C	rs2025459	A	C	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr10	34732554	34732555	chr10:34732555:G:A	rs35190695	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr10	34766482	34766483	chr10:34766483:C:T	rs75544309	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr10	35015933	35015934	chr10:35015934:T:C	rs2384280	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	9.99340693732454	7.60042119481404	GCAATTCTTTTACAATTA
chr10	35088786	35088787	chr10:35088787:A:G	rs4934721	A	G	G	Msx3.mouse_homeodomain_1	10	1	+	8.64263050169449	7.566039330758017	ATACTCAAAAAGCAATTG
chr10	35153060	35153061	chr10:35153061:C:G	rs187479788	C	G	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr10	35218920	35218921	chr10:35218921:C:T	rs545583316	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr10	35421527	35421528	chr10:35421528:A:G	rs3013357	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	6.718125226379507	5.608309689055912	CCAATTTAAGACCAAGTA
chr10	35848747	35848748	chr10:35848748:A:G	rs16905746	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	9.369678078462844	10.814800742029323	AACATTAAAGTGTAATTA
chr10	35888126	35888127	chr10:35888127:C:T	rs12570791	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	6.794219201566568	5.597268176391156	CCAATTAGCACGCAATCC
chr10	36089969	36089970	chr10:36089970:C:T	rs11010430	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr10	36096602	36096603	chr10:36096603:C:T	rs10827597	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	36186875	36186876	chr10:36186876:A:G	rs7922289	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr10	36188840	36188841	chr10:36188841:C:G	rs315627	C	G	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr10	36220454	36220455	chr10:36220455:A:C	rs77280784	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	9.573436646527014	4.499903870417684	TAAATTAAGATCCACTTA
chr10	36507103	36507104	chr10:36507104:G:T	rs7897758	G	T	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	36759501	36759502	chr10:36759502:T:C	rs7907995	T	C	-	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr10	36780276	36780277	chr10:36780277:T:C	rs16937256	T	C	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr10	36803016	36803017	chr10:36803017:A:C	chr10:36803017:A:C	A	C	a	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	37400893	37400894	chr10:37400894:T:C	rs61857693	T	C	t	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr10	37804615	37804616	chr10:37804616:T:C	rs55742761	T	C	.	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr10	42086820	42086821	chr10:42086821:C:T	rs1265384773	C	T	.	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr10	42486246	42486247	chr10:42486247:A:T	rs1889310	A	T	.	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	42963739	42963740	chr10:42963740:T:C	rs77296948	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr10	43086661	43086662	chr10:43086662:A:G	rs73266201	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr10	43511980	43511981	chr10:43511981:G:A	rs3006398	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr10	43558744	43558745	chr10:43558745:G:A	rs3006384	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	43671825	43671826	chr10:43671826:A:T	chr10:43671826:A:T	A	T	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	44180823	44180824	chr10:44180824:G:A	rs17155445	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr10	44180843	44180844	chr10:44180844:G:A	rs74138238	G	A	A	Msx3.mouse_homeodomain_1	11	1	-	9.28016994472668	7.569939525742972	GCTATTATTATCGAATTA
chr10	44261445	44261446	chr10:44261446:G:T	rs604674	G	T	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr10	44668823	44668824	chr10:44668824:C:T	rs77444088	C	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr10	44675163	44675164	chr10:44675164:G:A	rs77462963	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr10	45309041	45309042	chr10:45309042:G:A	rs117262586	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	46239402	46239403	chr10:46239403:C:T	rs12416311	C	T	.	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr10	46262621	46262622	chr10:46262622:G:A	rs2999425	G	A	.	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr10	47015253	47015254	chr10:47015254:C:T	rs200489375	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	47015265	47015266	chr10:47015266:A:G	rs202226428	A	G	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	47131842	47131843	chr10:47131843:A:G	rs10788713	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	47385025	47385026	chr10:47385026:A:G	rs1902719	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	8.207346709179653	7.266802716793507	GCAATTGATAAAGGATTA
chr10	47385046	47385047	chr10:47385047:T:C	rs187111258	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr10	47385661	47385662	chr10:47385662:G:A	rs73295033	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr10	47385685	47385686	chr10:47385686:A:G	rs7090464	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.228589511105918	1.6404952920827678	CCCCTCACAAACCCATTA
chr10	48475522	48475523	chr10:48475523:A:G	rs3954044	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr10	48589987	48589988	chr10:48589988:C:T	rs3843001	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr10	48712251	48712252	chr10:48712252:A:G	rs2377624	A	G	G	Msx3.mouse_homeodomain_1	5	1	-	7.724463595993858	5.331477853483357	CTCATTGAAATGCTATTA
chr10	48712261	48712262	chr10:48712262:C:T	rs17011115	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	49176774	49176775	chr10:49176775:C:G	rs7923767	C	G	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr10	49357529	49357530	chr10:49357530:G:A	rs2889792	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr10	50169886	50169887	chr10:50169887:A:G	rs796830832	A	G	-	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	50541771	50541772	chr10:50541772:C:T	rs11006084	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr10	50541807	50541808	chr10:50541808:G:A	rs2983358	G	A	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	50740771	50740772	chr10:50740772:T:C	rs79645576	T	C	.	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr10	50794582	50794583	chr10:50794583:A:G	rs76820804	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr10	51371198	51371199	chr10:51371199:G:A	rs1209486	G	A	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr10	51489176	51489177	chr10:51489177:A:C	rs146364240	A	C	A	Msx3.mouse_homeodomain_1	8	1	+	9.0315521030858	8.111985278453247	TAAATAACACAGCAATTA
chr10	51492495	51492496	chr10:51492496:T:A	rs1926210	T	A	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	51626280	51626281	chr10:51626281:A:G	rs114810229	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	51897100	51897101	chr10:51897101:G:A	rs67336648	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr10	52135774	52135775	chr10:52135775:G:A	rs77255750	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	52146047	52146048	chr10:52146048:G:A	rs35222522	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr10	52615594	52615595	chr10:52615595:C:T	rs10762817	C	T	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr10	52615617	52615618	chr10:52615618:G:C	rs10824678	G	C	G	Msx3.mouse_homeodomain_1	16	1	+	7.966718914116565	9.91530253663204	GCAATTATGTTCAAATGA
chr10	52618109	52618110	chr10:52618110:A:G	rs4447119	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	8.456810498466744	8.126869545750647	GCACTTATTAAGTACTTA
chr10	52621819	52621820	chr10:52621820:A:C	rs113386981	A	C	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr10	52673209	52673210	chr10:52673210:A:G	rs7092106	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	53070108	53070109	chr10:53070109:C:G	rs7086697	C	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr10	53437110	53437111	chr10:53437111:T:G	rs7078885	T	G	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr10	53531433	53531434	chr10:53531434:A:C	rs11003667	A	C	A	Msx3.mouse_homeodomain_1	17	1	+	7.520231828874462	2.933375247747954	CCAATTAGTCAGAAGTTA
chr10	54169722	54169723	chr10:54169723:C:T	rs59934328	C	T	c	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	55081425	55081426	chr10:55081426:A:G	rs10825458	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr10	56122166	56122167	chr10:56122167:C:T	rs2133900	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.124924239757785	6.679801576191305	GGTATTAGCTCCCAATTA
chr10	56176094	56176095	chr10:56176095:C:T	rs2393006	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	9.072035984158564	7.875084958983151	ACAATAATAATGCAATAA
chr10	56874835	56874836	chr10:56874836:G:A	rs16909599	G	A	g	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	57207431	57207432	chr10:57207432:T:C	rs28648415	T	C	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	57224250	57224251	chr10:57224251:A:T	rs7077365	A	T	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr10	57575571	57575572	chr10:57575572:C:A	rs10826087	C	A	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr10	57575730	57575731	chr10:57575731:A:T	rs76642642	A	T	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr10	57703834	57703835	chr10:57703835:A:G	rs7911260	A	G	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr10	57763602	57763603	chr10:57763603:A:G	rs16911014	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.83896905589883	3.8695380795299528	CCAATGAAGAGAAAATTA
chr10	58007376	58007377	chr10:58007377:A:T	rs1930468	A	T	A	Msx3.mouse_homeodomain_1	10	1	-	11.400689687281226	11.89426121125635	GAAATAAGAATCCAATTA
chr10	58029007	58029008	chr10:58029008:G:A	rs78685378	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr10	58107998	58107999	chr10:58107999:T:C	rs1930494	T	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	58355462	58355463	chr10:58355463:G:T	rs1905455	G	T	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr10	58645480	58645481	chr10:58645481:T:G	chr10:58645481:T:G	T	G	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr10	58672884	58672885	chr10:58672885:G:A	rs12770994	G	A	G	Msx3.mouse_homeodomain_1	14	1	-	10.712599697024928	9.94681838392956	CCAATTAAAAACCACTAA
chr10	59079515	59079516	chr10:59079516:A:G	rs12244066	A	G	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr10	60175549	60175550	chr10:60175550:T:A	rs142655634	T	A	T	Msx3.mouse_homeodomain_1	16	1	+	8.217953745046724	4.333115817523665	ATCATTACAAGCTGATTA
chr10	60286654	60286655	chr10:60286655:C:T	rs72822222	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	14.595285775692066	13.398334750516657	GCAATTAACTAGAAATTA
chr10	60343437	60343438	chr10:60343438:A:G	rs2061489	A	G	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr10	60560571	60560572	chr10:60560572:G:A	rs2068043	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr10	61099862	61099863	chr10:61099863:A:G	rs117870947	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	61488036	61488037	chr10:61488037:A:T	rs2249816	A	T	T	Msx3.mouse_homeodomain_1	3	1	+	7.268617292780971	2.14126695263288	GTAATTCAATGGCAGTTA
chr10	61622808	61622809	chr10:61622809:A:G	rs1869928	A	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	61755311	61755312	chr10:61755312:G:A	rs2588993	G	A	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr10	61838256	61838257	chr10:61838257:C:T	rs921644572	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	61961205	61961206	chr10:61961206:C:A	rs139936628	C	A	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr10	61971242	61971243	chr10:61971243:G:A	rs953570220	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.704262017588208	7.595752462423464	GTAATTGAATAGTAATTC
chr10	62049864	62049865	chr10:62049865:C:A	rs10821948	C	A	C	Msx3.mouse_homeodomain_1	11	1	-	8.071852974714119	6.4470880964406705	TTACTTAAGGAGTGATTA
chr10	62054988	62054989	chr10:62054989:T:G	rs73276026	T	G	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	62492350	62492351	chr10:62492351:A:C	rs11813235	A	C	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr10	62528832	62528833	chr10:62528833:A:G	rs2393892	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.635234860622301	1.7277696236982947	GCAATTAGTAATTAGTTA
chr10	62860890	62860891	chr10:62860891:A:G	rs181560599	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr10	62860928	62860929	chr10:62860929:C:A	rs1509960	C	A	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr10	62886460	62886461	chr10:62886461:C:T	rs12769822	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr10	62886461	62886462	chr10:62886462:T:C	rs10995344	T	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr10	63437548	63437549	chr10:63437549:A:C	rs77494594	A	C	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr10	63585025	63585026	chr10:63585026:G:T	rs149578068	G	T	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	63628619	63628620	chr10:63628620:T:C	rs138853872	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	63701245	63701246	chr10:63701246:T:C	rs16918794	T	C	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	63720129	63720130	chr10:63720130:G:A	rs1255487	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	63820020	63820021	chr10:63820021:G:T	rs7919227	G	T	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr10	65408628	65408629	chr10:65408629:A:C	rs2800202	A	C	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	65535205	65535206	chr10:65535206:G:A	rs12049789	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	65571504	65571505	chr10:65571505:G:A	rs191924447	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	66044155	66044156	chr10:66044156:G:A	rs10996849	G	A	g	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	66044164	66044165	chr10:66044165:C:T	rs6480131	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	10.39076249257623	9.19381146740082	GTACTAAAGATGCAATTA
chr10	66142679	66142680	chr10:66142680:A:C	rs10509249	A	C	A	Msx3.mouse_homeodomain_1	10	1	+	9.16809031884635	7.630546494997513	GCAATTAAACAACCATAA
chr10	66153400	66153401	chr10:66153401:A:T	rs1462819	A	T	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr10	66368634	66368635	chr10:66368635:C:A	chr10:66368635:C:A	C	A	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	66516697	66516698	chr10:66516698:T:C	rs10762073	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr10	66564517	66564518	chr10:66564518:C:A	rs75944353	C	A	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	66684554	66684555	chr10:66684555:T:A	rs2394295	T	A	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	67695493	67695494	chr10:67695494:T:C	rs12265366	T	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr10	68227005	68227006	chr10:68227006:G:A	rs7091411	G	A	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr10	68523476	68523477	chr10:68523477:A:G	rs80341890	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.467567816778171	1.560102579854164	TCAATTAAAAAAAAATGA
chr10	68865803	68865804	chr10:68865804:G:A	rs4295943	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	69222385	69222386	chr10:69222386:C:A	rs78983061	C	A	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr10	69390878	69390879	chr10:69390879:T:C	rs12414591	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr10	69678201	69678202	chr10:69678202:C:T	rs183089761	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	7.456097435758585	6.347587880593841	GCAATAAAGAAGCAGTTG
chr10	69856166	69856167	chr10:69856167:C:T	rs3957150	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr10	69873499	69873500	chr10:69873500:A:G	rs3998148	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	6.61129266114381	4.5540184822376135	GCATTTAGGGGGCAATTG
chr10	69893338	69893339	chr10:69893339:G:A	rs11598413	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	70176889	70176890	chr10:70176890:T:G	rs79781962	T	G	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr10	70204717	70204718	chr10:70204718:A:G	rs10999179	A	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr10	70204719	70204720	chr10:70204720:A:G	rs10999180	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	70337389	70337390	chr10:70337390:C:A	rs115701109	C	A	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr10	70354621	70354622	chr10:70354622:T:C	rs4747011	T	C	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr10	70738540	70738541	chr10:70738541:G:A	rs79999320	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr10	70880283	70880284	chr10:70880284:A:G	rs41314988	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	70891936	70891937	chr10:70891937:T:C	rs1338643	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.99772905568693	3.409634836663781	GATATTAAAAAGCAATTC
chr10	70986385	70986386	chr10:70986386:C:T	rs1614131	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr10	70993401	70993402	chr10:70993402:G:T	rs10762412	G	T	T	Msx3.mouse_homeodomain_1	7	1	-	7.806032114345295	9.195918661050051	TCAATAACTGAACGATTA
chr10	71019054	71019055	chr10:71019055:G:A	rs10999637	G	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr10	71127341	71127342	chr10:71127342:A:T	rs55742809	A	T	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr10	71127376	71127377	chr10:71127377:C:T	rs56243724	C	T	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	71209360	71209361	chr10:71209361:G:A	rs113932187	G	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	71289564	71289565	chr10:71289565:G:A	rs16928641	G	A	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr10	72013640	72013641	chr10:72013641:G:T	rs10823898	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	72089993	72089994	chr10:72089994:C:T	rs1245540	C	T	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	72170238	72170239	chr10:72170239:G:A	rs59242120	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	74067921	74067922	chr10:74067922:C:T	rs7084492	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	74437610	74437611	chr10:74437611:A:G	rs1904058	A	G	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr10	74640741	74640742	chr10:74640742:T:G	rs4746213	T	G	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr10	75091367	75091368	chr10:75091368:G:A	rs2395138	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr10	75602380	75602381	chr10:75602381:C:G	rs7068272	C	G	G	Msx3.mouse_homeodomain_1	17	1	-	8.625799154014	6.607102170070695	GCAATTTACACACAATTG
chr10	76134071	76134072	chr10:76134072:A:C	rs12355465	A	C	C	Msx3.mouse_homeodomain_1	5	1	-	7.911725208769181	3.469143431302018	GAGATTATGCTGTAATTA
chr10	76398378	76398379	chr10:76398379:T:C	rs1907337	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr10	76559203	76559204	chr10:76559204:A:G	rs76724909	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	8.381252394208008	7.440708401821866	ACAATAAAAAAGCACTTG
chr10	76729320	76729321	chr10:76729321:C:T	rs10824440	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr10	76972670	76972671	chr10:76972671:G:C	rs7068994	G	C	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	77189206	77189207	chr10:77189207:A:G	rs12763167	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr10	77328245	77328246	chr10:77328246:T:C	rs10824527	T	C	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr10	77486442	77486443	chr10:77486443:T:C	rs866392	T	C	C	Msx3.mouse_homeodomain_1	17	1	+	7.322931706887365	6.106861321639654	CCAATTATACCCCACTTT
chr10	77505804	77505805	chr10:77505805:T:C	rs714673	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr10	77607183	77607184	chr10:77607184:C:T	rs1515417	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	77607234	77607235	chr10:77607235:G:A	rs78667857	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr10	77685568	77685569	chr10:77685569:C:T	rs11002241	C	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	77772217	77772218	chr10:77772218:A:G	rs2579170	A	G	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	77813551	77813552	chr10:77813552:G:A	rs1248624	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr10	78331547	78331548	chr10:78331548:G:T	rs77990518	G	T	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr10	78331580	78331581	chr10:78331581:T:C	rs1916400	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr10	79032650	79032651	chr10:79032651:C:T	rs757577114	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	79351383	79351384	chr10:79351384:G:A	rs11599161	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr10	79398876	79398877	chr10:79398877:G:A	rs564667873	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr10	79398877	79398878	chr10:79398878:C:A	rs533666177	C	A	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr10	80014930	80014931	chr10:80014931:C:T	rs12244122	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	10.602244697369969	10.932185650086069	CTCATTACATGCTAATTA
chr10	80106523	80106524	chr10:80106524:C:T	rs138718072	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	7.799326751693655	6.602375726518245	CCAATCATATGGTAATAA
chr10	81603363	81603364	chr10:81603364:A:G	rs12780726	A	G	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr10	82149430	82149431	chr10:82149431:T:G	rs11192703	T	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	82818087	82818088	chr10:82818088:G:A	rs118127986	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	82825951	82825952	chr10:82825952:G:A	rs478982	G	A	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr10	83120580	83120581	chr10:83120581:G:A	rs34425197	G	A	g	Msx3.mouse_homeodomain_1	6	1	+	7.2832702484360725	9.72534747536763	GGAATCGTGAGCCAATTA
chr10	83152690	83152691	chr10:83152691:T:C	rs1339831	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr10	83208951	83208952	chr10:83208952:T:C	rs11197788	T	C	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr10	83352712	83352713	chr10:83352713:G:A	rs7076751	G	A	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr10	83372255	83372256	chr10:83372256:G:A	rs181620474	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	83477110	83477111	chr10:83477111:A:G	rs1855961	A	G	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr10	83540071	83540072	chr10:83540072:A:T	rs187600119	A	T	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr10	83686144	83686145	chr10:83686145:G:A	rs3904538	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	7.137273697382453	5.692151033815971	GCACTTAATAACCCATTC
chr10	83872775	83872776	chr10:83872776:T:C	rs1110421	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.6352326244616355	3.6658016480927573	TAAATTTCAGGCCAATTA
chr10	83986134	83986135	chr10:83986135:G:T	rs7905700	G	T	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	84184565	84184566	chr10:84184566:T:A	rs35568118	T	A	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	84266394	84266395	chr10:84266395:T:C	rs11818532	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	84435769	84435770	chr10:84435770:A:C	rs77323615	A	C	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr10	84528907	84528908	chr10:84528908:T:C	rs12412016	T	C	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr10	85189262	85189263	chr10:85189263:T:C	rs7098364	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	7.85872896507028	3.270634746047131	ACAATTTCTTACCAATCA
chr10	85224779	85224780	chr10:85224780:C:T	rs9787543	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr10	85300370	85300371	chr10:85300371:C:G	rs145134539	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	9.963703874175952	6.699355017147636	ACAATTTCTGTCCAATTA
chr10	85606045	85606046	chr10:85606046:A:C	rs2280012	A	C	C	Msx3.mouse_homeodomain_1	6	1	+	7.437258443359892	3.192242636887732	GTAATAATGGAGCATTTA
chr10	85994440	85994441	chr10:85994441:G:A	rs7095652	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr10	86390844	86390845	chr10:86390845:A:G	rs1863821	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	5.8581226477291475	3.4160454207975905	GCGATGACAGTCCCATTA
chr10	86390860	86390861	chr10:86390861:C:T	rs74149568	C	T	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr10	86616763	86616764	chr10:86616764:G:A	rs2262804	G	A	A	Msx3.mouse_homeodomain_1	11	1	-	9.018895704575272	7.30866528559156	ATAATTAAGTTCAAATCA
chr10	86722766	86722767	chr10:86722767:C:T	rs12771609	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr10	87667411	87667412	chr10:87667412:T:C	rs7071248	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	6.257856413954927	-0.649608822969078	GCCATGATCATGCCATTA
chr10	87867562	87867563	chr10:87867563:C:A	rs892673897	C	A	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr10	88001938	88001939	chr10:88001939:A:C	rs10788572	A	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	88027517	88027518	chr10:88027518:A:G	rs2049814	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr10	88195271	88195272	chr10:88195272:T:G	rs1475606	T	G	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr10	88281031	88281032	chr10:88281032:C:T	rs189499487	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr10	88336822	88336823	chr10:88336823:G:A	rs72820004	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr10	88488771	88488772	chr10:88488772:T:C	rs9664772	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr10	88737897	88737898	chr10:88737898:T:C	rs405147	T	C	T	Msx3.mouse_homeodomain_1	12	1	+	7.822365340021679	9.26748800358816	GCATTTGGAATGTAATTA
chr10	88848759	88848760	chr10:88848760:T:C	rs76240008	T	C	t	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr10	88935485	88935486	chr10:88935486:G:A	rs3781212	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	88935487	88935488	chr10:88935488:T:C	rs148204227	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr10	88935507	88935508	chr10:88935508:G:T	rs3781211	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	9.91277376042553	7.401465000656706	ACAATTAGGACACAATTG
chr10	88935534	88935535	chr10:88935535:A:C	rs551714685	A	C	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr10	88935536	88935537	chr10:88935537:G:A	chr10:88935537:G:A	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	89008482	89008483	chr10:89008483:T:C	rs7910435	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	6.298074020970792	0.1995283411016593	CCCATCTCAGGGCAATTA
chr10	89098063	89098064	chr10:89098064:C:T	rs11202978	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.32502666679526	9.401617837731735	TCAATTACCTGTGAATTA
chr10	89279279	89279280	chr10:89279280:C:T	rs73359624	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	89355755	89355756	chr10:89355756:C:T	rs77295092	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	10.932185650086069	10.108594905825889	CTCATTATATGCTAATTA
chr10	89625320	89625321	chr10:89625321:G:C	rs730204	G	C	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr10	89849311	89849312	chr10:89849312:T:C	rs10881691	T	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr10	90592941	90592942	chr10:90592942:G:A	rs1274393	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr10	90592979	90592980	chr10:90592980:G:A	rs77164180	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr10	91088895	91088896	chr10:91088896:A:T	chr10:91088896:A:T	A	T	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr10	91557012	91557013	chr10:91557013:G:A	rs575660712	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr10	91596614	91596615	chr10:91596615:T:C	rs10509629	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	91610816	91610817	chr10:91610817:C:T	rs7906741	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr10	91669018	91669019	chr10:91669019:A:G	rs7072687	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	91797097	91797098	chr10:91797098:T:C	rs1341263	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	10.031423880039714	11.139933435204458	ACAATAATATTGAAATTA
chr10	92993555	92993556	chr10:92993556:G:A	rs56024810	G	A	G	Msx3.mouse_homeodomain_1	3	1	-	9.721175393533864	7.473999417918671	ACACTTAAAAACTAATTT
chr10	93438788	93438789	chr10:93438789:C:T	rs74940310	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	6.24230187849981	5.469461701757916	CGCATCGAAGTCCAATTA
chr10	93476693	93476694	chr10:93476694:C:G	rs76809163	C	G	C	Msx3.mouse_homeodomain_1	12	1	+	6.020227115910153	2.520844097293995	GCCATTACAGCCCCATTT
chr10	93788622	93788623	chr10:93788623:T:C	rs10882335	T	C	C	Msx3.mouse_homeodomain_1	6	1	-	6.4935331479804	4.051455921048842	TCAATGACGGTCCAATTG
chr10	93790268	93790269	chr10:93790269:T:G	rs12255855	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	8.430595030516965	6.048007589046239	TAATTTAAAAGCCAATTA
chr10	93893434	93893435	chr10:93893435:C:A	rs11187722	C	A	C	Msx3.mouse_homeodomain_1	7	1	-	9.041120029364574	9.090989972699507	AGAATTAGTGTGTAATTA
chr10	94143697	94143698	chr10:94143698:C:T	rs1223634	C	T	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	94320370	94320371	chr10:94320371:A:G	rs140353419	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr10	95260461	95260462	chr10:95260462:C:T	rs45518536	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	95536447	95536448	chr10:95536448:G:T	rs59521949	G	T	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr10	96271908	96271909	chr10:96271909:T:A	rs7896411	T	A	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr10	96584849	96584850	chr10:96584850:A:G	rs7085389	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	96585244	96585245	chr10:96585245:T:C	rs535384201	T	C	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr10	97215007	97215008	chr10:97215008:A:T	rs11189038	A	T	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr10	97215091	97215092	chr10:97215092:C:T	rs701810	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr10	98345424	98345425	chr10:98345425:G:A	rs1925634	G	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr10	98533942	98533943	chr10:98533943:T:G	rs898892	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	7.8863526828619746	0.97888744593797	GTCCTCAGAGAGCAATTA
chr10	98666446	98666447	chr10:98666447:G:A	rs522007	G	A	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr10	98814786	98814787	chr10:98814787:A:C	rs1365959247	A	C	A	Msx3.mouse_homeodomain_1	8	1	+	11.061125714513825	10.14155888988127	CCAATAAAACAGCCATTA
chr10	99024976	99024977	chr10:99024977:A:C	rs72838806	A	C	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr10	99529365	99529366	chr10:99529366:T:C	rs7899176	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	10.42548054205733	11.273323412938018	ATAATTAAATGACAATTT
chr10	99620674	99620675	chr10:99620675:A:C	chr10:99620675:A:C	A	C	a	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	99673028	99673029	chr10:99673029:T:C	rs77012345	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr10	99694384	99694385	chr10:99694385:A:G	rs2300982	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	99742976	99742977	chr10:99742977:G:A	rs4919393	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr10	99912353	99912354	chr10:99912354:A:G	rs11190316	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	99932426	99932427	chr10:99932427:A:G	rs139101533	A	G	.	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr10	100146191	100146192	chr10:100146192:G:T	rs116181998	G	T	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr10	100639196	100639197	chr10:100639197:C:A	rs61871578	C	A	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	100881933	100881934	chr10:100881934:G:A	rs1467616	G	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr10	101486054	101486055	chr10:101486055:C:G	rs41303831	C	G	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr10	101486197	101486198	chr10:101486198:T:G	chr10:101486198:T:G	T	G	T	Msx3.mouse_homeodomain_1	4	1	+	7.405315233199954	1.7473259812502566	GCTGTTGTAATCCAATTA
chr10	101818953	101818954	chr10:101818954:C:T	rs78585955	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	101903603	101903604	chr10:101903604:G:C	rs79921780	G	C	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr10	102769852	102769853	chr10:102769853:T:C	rs142093276	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	103035651	103035652	chr10:103035652:C:T	rs7920868	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	103147234	103147235	chr10:103147235:T:C	rs12243903	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	8.626269324768998	8.743972973293996	TTAATAAATTGCAAATTA
chr10	103181188	103181189	chr10:103181189:T:C	rs79237883	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	10.238982080915573	7.114032927321719	CTTATTGTATACCAATTA
chr10	103353094	103353095	chr10:103353095:C:A	rs117927731	C	A	-	Msx3.mouse_homeodomain_1	12	1	+	9.056143223187728	6.5448344634189	AAAATTAAAATACAATAA
chr10	103466780	103466781	chr10:103466781:T:C	rs17736358	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	8.939354310774641	7.829538773451047	GGAATTAAGTAGTAATTT
chr10	103848866	103848867	chr10:103848867:C:T	rs7091042	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	103850046	103850047	chr10:103850047:G:T	rs10883927	G	T	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	103975135	103975136	chr10:103975136:C:A	rs11191887	C	A	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr10	104037416	104037417	chr10:104037417:C:A	rs2282436	C	A	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr10	104608759	104608760	chr10:104608760:T:G	rs10748864	T	G	t	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	104648148	104648149	chr10:104648149:G:A	rs10786812	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	104876238	104876239	chr10:104876239:G:A	rs1961639	G	A	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	104935120	104935121	chr10:104935121:G:A	rs7099674	G	A	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr10	105064211	105064212	chr10:105064212:A:G	rs17789408	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr10	105148792	105148793	chr10:105148793:A:G	rs2167623	A	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr10	105757586	105757587	chr10:105757587:A:G	rs1362991	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	8.052115797284962	5.535247169347884	TCAATTCACTTGCAATCA
chr10	106747018	106747019	chr10:106747019:C:G	rs9888129	C	G	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr10	106778903	106778904	chr10:106778904:C:T	rs1415022	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	106837174	106837175	chr10:106837175:G:A	rs77313197	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr10	106837696	106837697	chr10:106837697:A:C	rs17121682	A	C	A	Msx3.mouse_homeodomain_1	9	1	-	7.652328952244558	7.125926231731496	ACAATTATATTGCAATCC
chr10	107207140	107207141	chr10:107207141:G:A	rs17284802	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr10	107496905	107496906	chr10:107496906:G:A	rs11596449	G	A	A	Msx3.mouse_homeodomain_1	10	1	+	8.226259287990828	9.302850458927303	GTTATAAAGCGGCAATTA
chr10	107535816	107535817	chr10:107535817:C:G	rs17291674	C	G	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	107727221	107727222	chr10:107727222:C:T	rs72827082	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	107866249	107866250	chr10:107866250:A:G	rs1424605	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr10	107913500	107913501	chr10:107913501:C:G	rs7920810	C	G	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr10	108253171	108253172	chr10:108253172:A:G	rs317502	A	G	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr10	108561913	108561914	chr10:108561914:T:C	rs1266984834	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr10	108753897	108753898	chr10:108753898:G:T	rs12258219	G	T	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr10	109028552	109028553	chr10:109028553:G:A	rs11194356	G	A	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	109071641	109071642	chr10:109071642:C:T	rs17125665	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	109420634	109420635	chr10:109420635:T:C	rs11194653	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	109843100	109843101	chr10:109843101:C:T	rs58986055	C	T	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr10	109929942	109929943	chr10:109929943:C:T	rs114411158	C	T	C	Msx3.mouse_homeodomain_1	16	1	+	7.377312912588914	10.502262066182766	CCAATTAAAATTCCATCG
chr10	109967467	109967468	chr10:109967468:G:A	rs189610818	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr10	109967486	109967487	chr10:109967487:C:T	rs186335450	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	8.985439854840997	9.877528886912245	TCAATTATCCTCTAATCA
chr10	109996003	109996004	chr10:109996004:C:T	rs7083619	C	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	110068406	110068407	chr10:110068407:A:G	rs7915852	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr10	110241506	110241507	chr10:110241507:C:T	rs79627845	C	T	C	Msx3.mouse_homeodomain_1	2	1	-	10.737342468674033	13.254211096611108	GCGATAAACAAGTAATTA
chr10	110438088	110438089	chr10:110438089:C:T	rs7085953	C	T	.	Msx3.mouse_homeodomain_1	7	1	-	6.402571399614797	7.512386936938392	GTGCTAAGGGACCAATTA
chr10	110438112	110438113	chr10:110438113:C:T	rs565958114	C	T	.	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	110610149	110610150	chr10:110610150:A:G	rs147307447	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	110698732	110698733	chr10:110698733:C:T	rs117417102	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr10	110698735	110698736	chr10:110698736:T:C	rs4918563	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr10	110710378	110710379	chr10:110710379:C:T	rs7091450	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr10	110802583	110802584	chr10:110802584:G:A	rs11195330	G	A	a	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr10	110802586	110802587	chr10:110802587:A:G	rs59523266	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	110893905	110893906	chr10:110893906:A:G	rs2273934	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr10	110931936	110931937	chr10:110931937:T:C	rs4918612	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	111392946	111392947	chr10:111392947:C:A	rs12264156	C	A	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr10	111436279	111436280	chr10:111436280:G:T	rs4918654	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	7.081094284953914	4.569785525185088	CCAATTTCCTTGCTATTA
chr10	111856793	111856794	chr10:111856794:C:A	rs78121526	C	A	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr10	112741925	112741926	chr10:112741926:A:G	rs7075671	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	7.0592972013322095	4.617219974400652	GCAATAAAAGTCCCTTTA
chr10	113074455	113074456	chr10:113074456:G:A	rs12776809	G	A	G	Msx3.mouse_homeodomain_1	7	1	+	8.611726333977057	9.721541871300648	TCAATTAGCAACATATTA
chr10	113177680	113177681	chr10:113177681:T:G	rs866423690	T	G	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr10	113407573	113407574	chr10:113407574:G:C	rs61865253	G	C	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr10	113442921	113442922	chr10:113442922:C:T	rs145547397	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	7.968797706442811	7.145206962182631	CTAATTGGCAGAAAATTA
chr10	113623386	113623387	chr10:113623387:G:A	rs67697865	G	A	G	Msx3.mouse_homeodomain_1	8	1	-	7.756617946161181	7.638914297636187	GCAATCACCTTGCAATGA
chr10	113702037	113702038	chr10:113702038:A:G	rs12255142	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	6.356148743412999	0.2576030635438653	GCCATTGTAGGGCTATTA
chr10	113891493	113891494	chr10:113891494:C:A	rs6585251	C	A	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr10	113967343	113967344	chr10:113967344:C:T	rs138946683	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr10	114022086	114022087	chr10:114022087:T:A	rs1445229126	T	A	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr10	114022087	114022088	chr10:114022088:C:A	rs1283067164	C	A	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr10	114228777	114228778	chr10:114228778:G:A	rs73357593	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	11.886973915942551	12.893523248787758	TTGATTAAGAGCCAATTA
chr10	114548304	114548305	chr10:114548305:G:A	rs2497719	G	A	A	Msx3.mouse_homeodomain_1	14	1	-	9.6172997736126	8.851518460517234	GGAATTAAGAGCCACTTA
chr10	114565442	114565443	chr10:114565443:A:G	rs2483560	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr10	114634524	114634525	chr10:114634525:G:A	rs11196820	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	114708987	114708988	chr10:114708988:C:T	rs703348	C	T	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	114773434	114773435	chr10:114773435:G:A	rs7082487	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr10	114823246	114823247	chr10:114823247:A:C	rs138199410	A	C	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr10	114867400	114867401	chr10:114867401:T:G	rs7094072	T	G	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr10	115977216	115977217	chr10:115977217:A:G	rs180701	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr10	116156621	116156622	chr10:116156622:C:T	rs10787630	C	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr10	116208817	116208818	chr10:116208818:A:G	rs2694767	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	116700449	116700450	chr10:116700450:C:A	rs2240709	C	A	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	116720165	116720166	chr10:116720166:G:A	rs11197805	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr10	117312367	117312368	chr10:117312368:G:A	rs140674197	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	6.388455078479178	5.279945523314432	GCAATCAGAAACCACTGA
chr10	117319368	117319369	chr10:117319369:A:G	rs17627569	A	G	A	Msx3.mouse_homeodomain_1	17	1	-	9.540879007996677	8.324808622748966	GCAATTATATTGCACTTT
chr10	117724659	117724660	chr10:117724660:C:T	rs6585452	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.804511106302377	6.359388442735894	CCATTTATAAAACCATTA
chr10	117791992	117791993	chr10:117791993:T:C	rs141182882	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	8.123645591663657	7.07967329178994	CCACTTAATTTTGAATTA
chr10	117819843	117819844	chr10:117819844:G:A	rs7093561	G	A	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr10	117853698	117853699	chr10:117853699:T:A	rs10886158	T	A	T	Msx3.mouse_homeodomain_1	8	1	-	12.172839618232821	11.135569145075266	ATAATTAAACTGAAATTA
chr10	118241199	118241200	chr10:118241200:C:G	rs181209851	C	G	C	Msx3.mouse_homeodomain_1	9	1	-	7.95789255430904	7.592206242750854	GCACTTAAAGCTGAATTA
chr10	118492278	118492279	chr10:118492279:G:A	rs945487	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr10	118669514	118669515	chr10:118669515:C:A	rs74159253	C	A	C	Msx3.mouse_homeodomain_1	11	1	+	10.433819221637025	9.151402655751353	GTCATTAAATGCCAATTT
chr10	118726511	118726512	chr10:118726512:A:G	rs9787632	A	G	A	Msx3.mouse_homeodomain_1	13	1	-	7.6253205354366616	8.923535941799251	GCAATAAGAAGTCTATTA
chr10	118726514	118726515	chr10:118726515:C:G	rs4752191	C	G	G	Msx3.mouse_homeodomain_1	10	1	-	7.6253205354366616	7.164367882524302	GCAATAAGAAGTCTATTA
chr10	119260302	119260303	chr10:119260303:G:A	rs75767068	G	A	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr10	119587250	119587251	chr10:119587251:G:A	rs11199030	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr10	119770095	119770096	chr10:119770096:T:C	rs189969394	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr10	119770138	119770139	chr10:119770139:T:A	rs196199	T	A	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	119874025	119874026	chr10:119874026:C:G	rs2456715	C	G	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr10	119892491	119892492	chr10:119892492:C:T	rs147749891	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	7.254272284254795	6.057321259079385	CGAATTGAGACGCAATTG
chr10	119892509	119892510	chr10:119892510:T:A	rs950014499	T	A	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr10	120035918	120035919	chr10:120035919:C:A	rs12258459	C	A	A	Msx3.mouse_homeodomain_1	12	1	+	7.514541546932568	5.003232787163741	GTAATTATGCTTCAATTC
chr10	120102892	120102893	chr10:120102893:T:G	rs1929677	T	G	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr10	120177634	120177635	chr10:120177635:G:A	rs1929700	G	A	A	Msx3.mouse_homeodomain_1	0	1	+	9.425552767861678	8.317043212696934	GCAATAAAAAATAGATTA
chr10	120177662	120177663	chr10:120177663:A:G	rs12766993	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	120240309	120240310	chr10:120240310:C:T	rs7097497	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	120320181	120320182	chr10:120320182:T:A	rs4559604	T	A	T	Msx3.mouse_homeodomain_1	13	1	-	9.16728313549471	4.984874672654744	CTAATTGGGAAGGAATTA
chr10	120423612	120423613	chr10:120423613:C:T	rs78251521	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr10	120592066	120592067	chr10:120592067:G:A	rs7912073	G	A	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr10	120841948	120841949	chr10:120841949:G:A	rs74591517	G	A	-	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr10	120841958	120841959	chr10:120841959:A:G	rs12220751	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr10	121259505	121259506	chr10:121259506:T:C	rs3925042	T	C	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr10	121284699	121284700	chr10:121284700:T:G	rs10788165	T	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	121381146	121381147	chr10:121381147:A:C	rs9420328	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	9.711986948276671	6.827793891799295	CCAATCAAGAGGCAATAA
chr10	122404617	122404618	chr10:122404618:A:G	rs2421022	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr10	122421249	122421250	chr10:122421250:C:T	rs10887151	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr10	122774539	122774540	chr10:122774540:C:T	rs113364535	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr10	122774548	122774549	chr10:122774549:A:G	rs7077831	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	10.19379550122317	6.224364524854293	CCAATTAAAATCCCATTC
chr10	123238775	123238776	chr10:123238776:T:C	rs11591872	T	C	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr10	123299005	123299006	chr10:123299006:T:C	rs4980272	T	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr10	123398135	123398136	chr10:123398136:G:T	rs189407925	G	T	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr10	123651545	123651546	chr10:123651546:C:T	rs17105736	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr10	123705752	123705753	chr10:123705753:G:C	rs11248242	G	C	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	123866233	123866234	chr10:123866234:C:T	rs56887219	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr10	124021441	124021442	chr10:124021442:C:T	rs9422312	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr10	124451346	124451347	chr10:124451347:C:T	rs72835571	C	T	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	124516967	124516968	chr10:124516968:T:C	rs11245253	T	C	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr10	124864996	124864997	chr10:124864997:C:T	rs76995699	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr10	124865001	124865002	chr10:124865002:G:A	rs2015178	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr10	125882690	125882691	chr10:125882691:C:T	rs2366052	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr10	126206649	126206650	chr10:126206650:A:G	rs7920920	A	G	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr10	126233674	126233675	chr10:126233675:T:C	rs7095963	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	126769648	126769649	chr10:126769649:T:C	rs4962611	T	C	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr10	127063965	127063966	chr10:127063966:G:A	rs116030382	G	A	G	Msx3.mouse_homeodomain_1	6	1	-	7.979041083806142	8.631774683165784	ATAATACGATACCAATTA
chr10	127102002	127102003	chr10:127102003:G:T	rs12244080	G	T	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr10	127149630	127149631	chr10:127149631:T:C	rs2489391	T	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr10	127337646	127337647	chr10:127337647:T:G	rs61870291	T	G	T	Msx3.mouse_homeodomain_1	8	1	+	7.567167375739349	7.597888516051692	TCCATTAATAGTCACTTA
chr10	127369798	127369799	chr10:127369799:G:A	rs79585145	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr10	127470262	127470263	chr10:127470263:A:C	rs1931725	A	C	C	Msx3.mouse_homeodomain_1	10	1	+	7.037342414365475	5.499798590516639	GCACTCAACAAATAATTG
chr10	127470274	127470275	chr10:127470275:A:G	rs9651385	A	G	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr10	127507654	127507655	chr10:127507655:C:T	rs7097718	C	T	c	Msx3.mouse_homeodomain_1	11	1	-	7.464164467562752	6.267213442387342	TCACATAAAAAGCAATTA
chr10	127507661	127507662	chr10:127507662:T:C	rs140633824	T	C	t	Msx3.mouse_homeodomain_1	4	1	-	7.464164467562752	8.711196761349136	TCACATAAAAAGCAATTA
chr10	127850416	127850417	chr10:127850417:G:A	rs749030	G	A	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr10	128339213	128339214	chr10:128339214:T:A	rs1754235	T	A	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr10	128509328	128509329	chr10:128509329:A:G	rs7093850	A	G	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr10	128557529	128557530	chr10:128557530:G:A	rs752658	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr10	128614011	128614012	chr10:128614012:C:T	rs7094999	C	T	-	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr10	128619793	128619794	chr10:128619794:G:A	rs6482691	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	8.32898720364501	6.883864540078529	GTATTTATTTATCAATTA
chr10	128702555	128702556	chr10:128702556:T:C	rs11016442	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr10	129207611	129207612	chr10:129207612:G:A	rs144363197	G	A	G	Msx3.mouse_homeodomain_1	6	1	+	12.051722544560686	14.493799771492245	GCAATCGTAATGCAATTA
chr10	129236038	129236039	chr10:129236039:C:A	rs111908834	C	A	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr10	129321642	129321643	chr10:129321643:C:T	rs7095617	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	129345826	129345827	chr10:129345827:A:G	rs75046828	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr10	129658692	129658693	chr10:129658693:A:C	rs113296119	A	C	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr10	129658717	129658718	chr10:129658718:A:C	rs78365553	A	C	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr10	129660006	129660007	chr10:129660007:G:A	rs7069414	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr10	129981365	129981366	chr10:129981366:C:T	rs10829672	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr10	129981374	129981375	chr10:129981375:A:G	rs642073	A	G	G	Msx3.mouse_homeodomain_1	10	1	-	7.21218497400898	6.168212674135265	TCCATTGACATCCAATAA
chr10	130329214	130329215	chr10:130329215:C:T	rs7904125	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.155341437922903	6.710218774356421	GTAATAGGGAAGCGATTA
chr10	130396034	130396035	chr10:130396035:G:A	rs74160363	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr10	130396050	130396051	chr10:130396051:A:C	rs10764954	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	8.924099056341683	3.850566280232355	TCAATTAAAACCTGATTT
chr10	130470245	130470246	chr10:130470246:C:G	rs394812	C	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr10	130893461	130893462	chr10:130893462:G:A	rs1655124	G	A	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr10	130956587	130956588	chr10:130956588:C:T	rs10829855	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr10	131096580	131096581	chr10:131096581:A:G	rs7073264	A	G	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr10	131096617	131096618	chr10:131096618:A:G	rs6482847	A	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr10	131143865	131143866	chr10:131143866:C:T	rs11017746	C	T	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr10	131143896	131143897	chr10:131143897:T:C	rs11017747	T	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr10	131365989	131365990	chr10:131365990:C:T	rs76570136	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr10	131486075	131486076	chr10:131486076:A:C	rs74429978	A	C	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr10	131631454	131631455	chr10:131631455:T:C	rs4316435	T	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr10	131772442	131772443	chr10:131772443:A:T	rs61864693	A	T	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr10	131869806	131869807	chr10:131869807:T:C	rs879094889	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr10	132330480	132330481	chr10:132330481:G:T	rs1132165	G	T	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr10	132330481	132330482	chr10:132330482:C:T	rs1132164	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr10	132330500	132330501	chr10:132330501:T:C	rs7085852	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	6.541268138844894	2.5718371624760166	CCAACTATCTACCAATCA
chr10	132330511	132330512	chr10:132330512:C:T	rs117392241	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr10	132722225	132722226	chr10:132722226:T:C	rs12254541	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	7.277875739914616	0.37041050299061107	CCAATTGTACACAACTTA
chr10	132803597	132803598	chr10:132803598:C:T	rs2804018	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr10	132804476	132804477	chr10:132804477:G:A	rs77049394	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr10	132992047	132992048	chr10:132992048:C:T	rs4073355	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr10	133305662	133305663	chr10:133305663:G:A	rs558143765	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr11	266920	266921	chr11:266921:A:G	rs11604857	A	G	a	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr11	269656	269657	chr11:269657:T:C	rs566467416	T	C	-	Msx3.mouse_homeodomain_1	2	1	-	7.328749503337925	4.811880875400847	CCACTAGGATGGCAATTA
chr11	338972	338973	chr11:338973:C:G	rs764402915	C	G	-	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr11	697667	697668	chr11:697668:C:G	rs77635418	C	G	C	Msx3.mouse_homeodomain_1	10	1	+	8.921334919336704	9.382287572249066	CCAATTAATGCGAAATCA
chr11	1351580	1351581	chr11:1351581:G:A	rs12284920	G	A	g	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr11	1414098	1414099	chr11:1414099:G:A	rs4963078	G	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	1573618	1573619	chr11:1573619:T:G	rs936060030	T	G	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr11	2261477	2261478	chr11:2261478:A:G	rs76705795	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr11	2261494	2261495	chr11:2261495:T:C	rs1548427	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	7.303880859129344	6.194065321805749	GCAATTAATACCCAAATG
chr11	2261502	2261503	chr11:2261503:A:C	rs11021988	A	C	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	2421281	2421282	chr11:2421282:T:C	rs112492621	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	8.0713631683759	1.9728174885067673	CCAATCAGCAGCCAGTTA
chr11	2456054	2456055	chr11:2456055:C:T	rs59954955	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr11	2741697	2741698	chr11:2741698:G:C	rs1270571402	G	C	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr11	2795470	2795471	chr11:2795471:C:G	rs2074200	C	G	C	Msx3.mouse_homeodomain_1	7	1	+	6.81194426693843	7.092015276319592	CCAGTCACAGAGCAATTG
chr11	2825711	2825712	chr11:2825712:C:T	rs7131198	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr11	2866244	2866245	chr11:2866245:C:T	rs78118214	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr11	2992451	2992452	chr11:2992452:C:T	rs917362491	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr11	3166815	3166816	chr11:3166816:A:T	rs11025728	A	T	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr11	3428268	3428269	chr11:3428269:A:G	rs7116682	A	G	a	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr11	3676787	3676788	chr11:3676788:A:C	rs73426351	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	7.737556488914726	2.6640237128053967	GCTATTACTGCATAATTA
chr11	4117894	4117895	chr11:4117895:G:A	rs232043	G	A	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	4671953	4671954	chr11:4671954:C:G	rs61885985	C	G	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr11	4705456	4705457	chr11:4705457:C:T	rs10836495	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.062845459054039	6.6177227954875555	GTTATTAATACCCAATAA
chr11	5102365	5102366	chr11:5102366:T:G	rs11035684	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	8.030027224965245	5.14583416848787	TCTATCAACCAGTAATTA
chr11	5252310	5252311	chr11:5252311:G:A	rs2255519	G	A	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr11	5581044	5581045	chr11:5581045:A:G	rs1077126	A	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr11	5626260	5626261	chr11:5626261:T:C	rs72882011	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr11	5691420	5691421	chr11:5691421:A:T	rs112046919	A	T	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr11	5698729	5698730	chr11:5698730:G:C	rs7950181	G	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr11	5891310	5891311	chr11:5891311:G:A	rs150524136	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	9.639552046454352	7.9293216274706415	ATAATTAGATGCTCATTA
chr11	6345522	6345523	chr11:6345523:C:T	rs73398805	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	8.681267632623499	9.725239932497217	CTAATAATAACGCAATCA
chr11	6474633	6474634	chr11:6474634:G:C	rs12294726	G	C	G	Msx3.mouse_homeodomain_1	1	1	-	8.28319111908024	5.018842262051925	ACAATTATTTTCCACTTG
chr11	6474637	6474638	chr11:6474638:C:G	rs74055804	C	G	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr11	6743627	6743628	chr11:6743628:T:G	rs11040997	T	G	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr11	6927209	6927210	chr11:6927210:C:T	rs1388527	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr11	7850154	7850155	chr11:7850155:C:T	rs73408495	C	T	C	Msx3.mouse_homeodomain_1	12	1	-	7.770338959482973	8.758413218330304	TCAATTACATTTGGATTA
chr11	7910436	7910437	chr11:7910437:G:T	rs4612795	G	T	G	Msx3.mouse_homeodomain_1	0	1	-	10.932185650086069	10.191027604795934	CTCATTATATGCTAATTA
chr11	7918414	7918415	chr11:7918415:A:G	rs80118993	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr11	8086208	8086209	chr11:8086209:T:A	rs73398926	T	A	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr11	8217790	8217791	chr11:8217791:G:A	rs78039136	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr11	8374217	8374218	chr11:8374218:A:G	rs139264317	A	G	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr11	8387572	8387573	chr11:8387573:C:T	rs528671908	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	7.470952523087813	6.274001497912402	ACAGTTACAGAGCACTTA
chr11	8531322	8531323	chr11:8531323:C:T	rs367993623	C	T	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr11	9384334	9384335	chr11:9384335:C:T	rs4509755	C	T	T	Msx3.mouse_homeodomain_1	5	1	+	8.269515395349561	10.662501137860062	TCAATCACGCAGCCATTA
chr11	9384343	9384344	chr11:9384344:A:G	rs6486306	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.269515395349561	3.6814211763264115	TCAATCACGCAGCCATTA
chr11	9738495	9738496	chr11:9738496:A:G	rs75178756	A	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	9849565	9849566	chr11:9849566:T:C	rs7108907	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	7.61253102468375	5.555256845777554	CTTATTCCATTCCAATTA
chr11	9849595	9849596	chr11:9849596:T:C	rs12808226	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr11	9906432	9906433	chr11:9906433:G:C	rs7930281	G	C	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr11	10307195	10307196	chr11:10307196:G:T	rs35440828	G	T	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr11	10771047	10771048	chr11:10771048:C:G	rs61871739	C	G	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr11	11070317	11070318	chr11:11070318:T:C	rs79300070	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr11	11161261	11161262	chr11:11161262:C:T	rs6484719	C	T	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr11	11718326	11718327	chr11:11718327:A:C	rs118146433	A	C	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr11	12030301	12030302	chr11:12030302:G:A	rs4757082	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr11	12030350	12030351	chr11:12030351:T:A	rs4757083	T	A	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	12047932	12047933	chr11:12047933:G:A	rs4910434	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	8.822094262792831	7.625143237617421	CTCATTATTGCGTAATTA
chr11	12213676	12213677	chr11:12213677:G:A	rs80120309	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr11	12362321	12362322	chr11:12362322:G:A	rs10741584	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	7.66645569500537	6.893615518263477	CCCATTCAAATCCAATTT
chr11	12375984	12375985	chr11:12375985:A:C	rs3812757	A	C	A	Msx3.mouse_homeodomain_1	17	1	+	8.904000131296904	4.317143550170396	GTAATCAAAACACACTTA
chr11	12414482	12414483	chr11:12414483:C:G	rs4491200	C	G	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr11	12769717	12769718	chr11:12769718:G:A	rs2403649	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr11	12888913	12888914	chr11:12888914:A:C	rs928852085	A	C	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr11	12999483	12999484	chr11:12999484:C:G	rs10831937	C	G	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr11	13256479	13256480	chr11:13256480:G:A	rs10766066	G	A	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr11	13676700	13676701	chr11:13676701:C:T	rs10500795	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr11	13860086	13860087	chr11:13860087:C:G	rs12281593	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	8.509185019851907	5.244836162823592	CCAATTAAATCCCATTTT
chr11	14148437	14148438	chr11:14148438:C:T	rs10741636	C	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr11	14203492	14203493	chr11:14203493:C:T	rs146750760	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	6.992332247218926	5.547209583652444	GTCCTTAAGAGACGATTA
chr11	14648255	14648256	chr11:14648256:C:A	rs4757261	C	A	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr11	15011585	15011586	chr11:15011586:A:G	rs1874431	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	8.54881082710417	9.993933490670653	AAAATTAAAAGGTACTTA
chr11	15170028	15170029	chr11:15170029:A:G	rs1714369	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	7.314311116991819	4.92132537448132	GCAAGTATTAAGCAATTT
chr11	15223571	15223572	chr11:15223572:C:T	rs1714336	C	T	C	Msx3.mouse_homeodomain_1	14	1	+	9.993933490670653	9.228152177575286	AAAATTAAAAGGCACTTA
chr11	15751320	15751321	chr11:15751321:T:A	rs11608200	T	A	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	15884244	15884245	chr11:15884245:A:C	rs12280670	A	C	A	Msx3.mouse_homeodomain_1	12	1	-	7.021720054056341	4.967459699006664	CCAATCAGGAACTGATCA
chr11	15897570	15897571	chr11:15897571:A:C	rs28630606	A	C	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	15987441	15987442	chr11:15987442:C:A	rs4757378	C	A	C	Msx3.mouse_homeodomain_1	8	1	+	6.929649680155135	7.849216504787693	CCAATTAACGAAGAATTC
chr11	16099118	16099119	chr11:16099119:G:A	rs1045591262	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr11	16236175	16236176	chr11:16236176:C:T	rs10500829	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr11	17001346	17001347	chr11:17001347:T:C	rs1468489	T	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr11	17208509	17208510	chr11:17208510:C:T	rs769571540	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.146890503944664	5.436660084960953	GTAATTAGTAGCCTATCA
chr11	17366541	17366542	chr11:17366542:A:G	rs74579935	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr11	17820013	17820014	chr11:17820014:A:T	rs7109836	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	10.146062270388198	5.96365380754823	CTAATTAAAAAAAAATTT
chr11	17820014	17820015	chr11:17820015:A:T	rs7109837	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr11	17824613	17824614	chr11:17824614:C:T	rs7115183	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	6.489000275013576	5.641157404132891	ACAATCAAGGTGCCATCA
chr11	18402293	18402294	chr11:18402294:A:G	rs10832930	A	G	a	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	18784504	18784505	chr11:18784505:G:C	rs7108873	G	C	G	Msx3.mouse_homeodomain_1	17	1	-	8.481865833884692	10.500562817827998	CTCATTAAATACTAATTC
chr11	19061431	19061432	chr11:19061432:A:G	rs905553	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr11	19119959	19119960	chr11:19119960:A:G	rs79813607	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr11	19119981	19119982	chr11:19119982:A:G	rs75331719	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.663749648950364	0.7562844120263574	ACACTTAAACTCCAATGA
chr11	19390125	19390126	chr11:19390126:G:A	rs189361274	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr11	19980854	19980855	chr11:19980855:A:G	rs12804468	A	G	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr11	20057308	20057309	chr11:20057309:G:A	rs537605260	G	A	g	Msx3.mouse_homeodomain_1	11	1	+	7.566519284663644	6.369568259488234	GTATTTACAGAGCAATTG
chr11	20112271	20112272	chr11:20112272:T:C	rs7124370	T	C	C	Msx3.mouse_homeodomain_1	10	1	-	10.870875064886874	9.7942838939504	GCATTTGAAAAGCAATTA
chr11	20112275	20112276	chr11:20112276:C:T	rs7108158	C	T	C	Msx3.mouse_homeodomain_1	6	1	-	10.870875064886874	13.312952291818434	GCATTTGAAAAGCAATTA
chr11	20881621	20881622	chr11:20881622:T:C	rs113631215	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr11	21063342	21063343	chr11:21063343:T:C	rs77664186	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.171883499197214	4.583789280174061	GTAATAAAACTCCAATAA
chr11	21472651	21472652	chr11:21472652:A:G	rs4617576	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	9.581342807529774	4.993248588506624	CTAATTAGGGAGCAATTC
chr11	21577542	21577543	chr11:21577543:A:G	rs77074121	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	7.818789295915814	8.927298851080558	AGAGTTAACAACTAATTA
chr11	21613735	21613736	chr11:21613736:C:G	rs4495891	C	G	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr11	21613748	21613749	chr11:21613749:T:G	rs56323531	T	G	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr11	21635315	21635316	chr11:21635316:C:T	rs4400803	C	T	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr11	21635319	21635320	chr11:21635320:A:G	rs4635075	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr11	21651631	21651632	chr11:21651632:A:G	rs10734304	A	G	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr11	21668328	21668329	chr11:21668329:G:T	rs11026152	G	T	G	Msx3.mouse_homeodomain_1	8	1	+	9.009350082048952	8.978628941736607	CCAATTAGGTCTCAATTT
chr11	21865805	21865806	chr11:21865806:T:A	rs11026309	T	A	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr11	22009019	22009020	chr11:22009020:T:C	rs10734310	T	C	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	22249994	22249995	chr11:22249995:T:C	rs138726346	T	C	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr11	22339530	22339531	chr11:22339531:A:G	rs7126852	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr11	22465761	22465762	chr11:22465762:G:A	rs10500930	G	A	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr11	22683113	22683114	chr11:22683114:A:T	rs111898628	A	T	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr11	22938640	22938641	chr11:22938641:T:A	rs11026850	T	A	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr11	23212809	23212810	chr11:23212810:C:T	rs2128495	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr11	23212843	23212844	chr11:23212844:A:G	rs2128494	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr11	24661341	24661342	chr11:24661342:A:G	rs116793594	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr11	24782024	24782025	chr11:24782025:T:C	rs2631398	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr11	24881193	24881194	chr11:24881194:A:G	rs1386229	A	G	G	Msx3.mouse_homeodomain_1	0	1	+	8.259018460523599	9.36752801568834	ACATTTAAAGTGAAATTA
chr11	24953467	24953468	chr11:24953468:C:A	rs10767280	C	A	C	Msx3.mouse_homeodomain_1	11	1	+	8.068997676049248	6.786581110163576	TTAATAAACCACCAATTT
chr11	25001294	25001295	chr11:25001295:T:G	rs10834572	T	G	T	Msx3.mouse_homeodomain_1	4	1	+	11.528357688130432	5.870368436180733	CCAATTATTAGGCAATTT
chr11	25068718	25068719	chr11:25068719:A:G	rs1374134	A	G	a	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr11	25198899	25198900	chr11:25198900:T:G	rs7929334	T	G	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr11	25909018	25909019	chr11:25909019:G:A	rs16914871	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	10.39152243848627	11.468113609422744	TCAATTGTCAGCTAATTA
chr11	25975964	25975965	chr11:25975965:T:C	rs112833727	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	9.314185493856808	6.746025896673605	CCTATTAGAAGCTGATTA
chr11	25993215	25993216	chr11:25993216:A:G	rs724027	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr11	26145774	26145775	chr11:26145775:G:C	rs3108817	G	C	C	Msx3.mouse_homeodomain_1	10	1	+	7.75379766795981	7.292845015047448	CCCATTAACTGATCATTA
chr11	26297813	26297814	chr11:26297814:T:C	rs781411244	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr11	26326933	26326934	chr11:26326934:T:A	rs11827865	T	A	A	Msx3.mouse_homeodomain_1	1	1	+	10.863254401777557	9.010807895717779	CTAATAAATCAACAATTA
chr11	26334326	26334327	chr11:26334327:A:C	rs11029525	A	C	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	26620833	26620834	chr11:26620834:T:C	rs72879841	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr11	26673264	26673265	chr11:26673265:C:T	rs4278475	C	T	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	26909693	26909694	chr11:26909694:T:G	rs7105515	T	G	G	Msx3.mouse_homeodomain_1	15	1	+	11.322651550478728	4.415186313554724	TCAATTATCTTCCAATCA
chr11	27055189	27055190	chr11:27055190:T:C	rs1286735251	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.977261814367659	1.0697965774436535	GCACTTACATCCCATTTA
chr11	27139867	27139868	chr11:27139868:A:G	chr11:27139868:A:G	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr11	27161155	27161156	chr11:27161156:A:C	rs61439592	A	C	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr11	27179447	27179448	chr11:27179448:A:C	rs11606133	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	8.672774343680182	3.5992415675708513	CCAGTCATTGAGCAATTA
chr11	27553416	27553417	chr11:27553417:T:G	rs141071460	T	G	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr11	27712219	27712220	chr11:27712220:G:C	rs79187269	G	C	G	Msx3.mouse_homeodomain_1	3	1	-	7.442013114237928	6.35275650240195	ACACTTGAGAAGCACTTA
chr11	27766235	27766236	chr11:27766236:T:C	rs10501091	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr11	28109968	28109969	chr11:28109969:C:T	rs76636274	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr11	28253255	28253256	chr11:28253256:G:A	rs61889026	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr11	28460286	28460287	chr11:28460287:A:G	rs10835341	A	G	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr11	28537793	28537794	chr11:28537794:A:G	rs11030368	A	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr11	28711709	28711710	chr11:28711710:T:C	rs11602636	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr11	28738733	28738734	chr11:28738734:A:G	rs11030422	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	8.616152935218189	10.061275598784672	CTAATTAATCTGTATTTA
chr11	29024040	29024041	chr11:29024041:G:A	rs11030553	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr11	29687950	29687951	chr11:29687951:C:G	rs324306	C	G	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr11	30046242	30046243	chr11:30046243:A:G	rs7125619	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr11	30155630	30155631	chr11:30155631:C:T	rs12272903	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr11	30184984	30184985	chr11:30184985:A:G	rs11030997	A	G	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr11	30392572	30392573	chr11:30392573:C:T	rs1296776601	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr11	30719672	30719673	chr11:30719673:A:G	rs7931310	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr11	31304872	31304873	chr11:31304873:T:C	rs2616821	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr11	31305550	31305551	chr11:31305551:T:G	rs2616817	T	G	T	Msx3.mouse_homeodomain_1	7	1	-	10.37016856843964	8.980282021734881	GCAATTAAAAAATGATTT
chr11	31434058	31434059	chr11:31434059:T:A	rs56404006	T	A	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	31653371	31653372	chr11:31653372:C:A	chr11:31653372:C:A	C	A	C	Msx3.mouse_homeodomain_1	2	1	+	8.55448260835891	10.937070049829632	ACCATTATATACTACTTA
chr11	31664900	31664901	chr11:31664901:G:A	rs4922571	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	10.493173475048017	11.43371746743416	TTAATCAATGCGCAATTA
chr11	31781930	31781931	chr11:31781931:A:G	rs3026407	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	8.848201823101233	5.72325266950738	GCAATTAAATATCTATTT
chr11	31797786	31797787	chr11:31797787:C:G	rs592859	C	G	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr11	31969343	31969344	chr11:31969344:C:G	rs113550663	C	G	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr11	32238718	32238719	chr11:32238719:T:C	rs7109202	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr11	32238767	32238768	chr11:32238768:C:A	rs11031652	C	A	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr11	32407431	32407432	chr11:32407432:A:G	rs7938016	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr11	32449572	32449573	chr11:32449573:G:A	rs79443652	G	A	G	Msx3.mouse_homeodomain_1	14	1	-	8.934205927185133	8.168424614089766	GCAATTTAATTGTACTTA
chr11	32451486	32451487	chr11:32451487:G:A	rs4980796	G	A	G	Msx3.mouse_homeodomain_1	6	1	+	6.900216273863514	9.342293500795073	GCAATCGAGGAACACTTA
chr11	32526731	32526732	chr11:32526732:T:C	rs7950535	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	13.286020185868047	10.893034443357546	TTAATTAAATGTCAATTA
chr11	32814309	32814310	chr11:32814310:C:T	rs928462929	C	T	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr11	32821709	32821710	chr11:32821710:A:C	rs557548594	A	C	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr11	32838692	32838693	chr11:32838693:A:C	rs983831079	A	C	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr11	33136595	33136596	chr11:33136596:T:C	rs11032156	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr11	33166606	33166607	chr11:33166607:A:C	rs7945332	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	8.207023520672184	2.5490342687224854	ATGATTGTTCACCAATTA
chr11	33169268	33169269	chr11:33169269:T:C	rs11032190	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr11	33169303	33169304	chr11:33169304:G:A	rs11032191	G	A	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr11	33692807	33692808	chr11:33692808:A:G	rs189090915	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	13.171790363142012	12.165241030296805	TCAATTACATGACAATTA
chr11	33858345	33858346	chr11:33858346:G:T	rs7106112	G	T	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr11	34207441	34207442	chr11:34207442:A:G	rs2611136	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	11.379151968787337	6.791057749764184	GTAATTAGGAACCTATTA
chr11	34212752	34212753	chr11:34212753:C:T	rs147082292	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	10.07696533271719	9.229122461836504	ACAATTATCCTCCACTTA
chr11	34234829	34234830	chr11:34234830:T:C	rs4756119	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	8.625369430825614	8.295428478109514	GCACTTATACAGAGATTA
chr11	34263324	34263325	chr11:34263325:G:C	rs117907997	G	C	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr11	34442191	34442192	chr11:34442192:T:C	rs4756146	T	C	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr11	34442212	34442213	chr11:34442213:A:G	rs524154	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr11	34655963	34655964	chr11:34655964:A:C	rs12803316	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	7.939074528544178	1.0316092916201733	CTAAATACAAGCCAATTA
chr11	34683169	34683170	chr11:34683170:A:G	rs856902	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.965848574746745	1.867302894877612	CCACTTGAAAGAAAATTA
chr11	34807862	34807863	chr11:34807863:C:T	rs474636	C	T	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr11	34894208	34894209	chr11:34894209:A:G	rs2986425	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr11	34927568	34927569	chr11:34927569:T:C	rs2915197	T	C	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr11	35012235	35012236	chr11:35012236:A:T	rs184150172	A	T	a	Msx3.mouse_homeodomain_1	6	1	+	10.92324391491708	7.330961707804561	AAAATTAAAAAAAAATTA
chr11	35044369	35044370	chr11:35044370:A:T	rs188085043	A	T	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr11	35089744	35089745	chr11:35089745:T:C	rs11032995	T	C	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	35161112	35161113	chr11:35161113:G:A	rs353642	G	A	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr11	35161471	35161472	chr11:35161472:G:A	rs353641	G	A	A	Msx3.mouse_homeodomain_1	11	1	+	6.2900381049085725	5.09308707973316	GCAATTGTGAAGCAATGG
chr11	35165800	35165801	chr11:35165801:C:T	rs353632	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	35177891	35177892	chr11:35177892:G:A	rs76730960	G	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	35178332	35178333	chr11:35178333:A:G	rs2180974	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr11	35179020	35179021	chr11:35179021:T:C	rs3794106	T	C	T	Msx3.mouse_homeodomain_1	16	1	-	10.511100042902683	9.322405194316413	ACAATTAAATGGTAATAA
chr11	35223339	35223340	chr11:35223340:T:C	rs10836343	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	6.610125189696698	4.168047962765141	GCAATAAAGGGCTGATTG
chr11	35324324	35324325	chr11:35324325:T:C	rs112422910	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr11	35420666	35420667	chr11:35420667:T:C	rs138566394	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	6.371600985246002	3.9295237583144464	GCATTTAACTACCAATCG
chr11	35740505	35740506	chr11:35740506:T:C	rs7126124	T	C	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr11	35965226	35965227	chr11:35965227:C:A	rs10836475	C	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr11	36073796	36073797	chr11:36073797:G:A	rs11033401	G	A	g	Msx3.mouse_homeodomain_1	11	1	-	12.010087134026541	10.299856715042832	ATAATTATAAACGAATTA
chr11	36157263	36157264	chr11:36157264:A:T	rs4756289	A	T	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr11	36274389	36274390	chr11:36274390:C:A	rs527931962	C	A	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr11	36363794	36363795	chr11:36363795:A:G	rs116467050	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	36363835	36363836	chr11:36363836:C:G	rs150897528	C	G	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr11	36470452	36470453	chr11:36470453:T:C	rs75846216	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr11	38014721	38014722	chr11:38014722:C:T	rs76114525	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr11	38510488	38510489	chr11:38510489:C:A	rs74711972	C	A	C	Msx3.mouse_homeodomain_1	10	1	+	7.796177978445766	9.333721802294601	TTAATTTAAACCCACTTA
chr11	39250121	39250122	chr11:39250122:A:T	rs11035182	A	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr11	39591303	39591304	chr11:39591304:T:C	rs1477865	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr11	39619873	39619874	chr11:39619874:G:A	rs7124730	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr11	41461172	41461173	chr11:41461173:A:T	rs12271167	A	T	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr11	41852146	41852147	chr11:41852147:C:A	rs7131352	C	A	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr11	41878853	41878854	chr11:41878854:C:T	rs190754528	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr11	42412950	42412951	chr11:42412951:G:A	rs7930009	G	A	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr11	42413029	42413030	chr11:42413030:A:T	rs7929715	A	T	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	42592090	42592091	chr11:42592091:G:A	rs77022848	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr11	42632595	42632596	chr11:42632596:A:T	rs7934937	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	9.492548296588556	5.165787945238998	GCAATTAGGTTCCCATCA
chr11	44081626	44081627	chr11:44081627:G:T	rs3134909	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	7.41430706665608	4.902998306887254	TTAATCAAGTGCCTATTA
chr11	44539252	44539253	chr11:44539253:G:A	rs57157535	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr11	44575266	44575267	chr11:44575267:A:G	rs17541041	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr11	44637940	44637941	chr11:44637941:A:G	rs76560828	A	G	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr11	44776042	44776043	chr11:44776043:C:T	rs78076698	C	T	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr11	44803515	44803516	chr11:44803516:C:T	rs704666	C	T	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	44893280	44893281	chr11:44893281:G:A	rs113111090	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr11	44893310	44893311	chr11:44893311:A:C	chr11:44893311:A:C	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	7.029379587066779	4.145186530589403	TCATTTAGGATCCAATTG
chr11	45250657	45250658	chr11:45250658:A:T	rs114453422	A	T	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr11	45354930	45354931	chr11:45354931:G:A	rs10160327	G	A	G	Msx3.mouse_homeodomain_1	5	1	-	8.539199907575568	10.932185650086069	CTCATCATATGCTAATTA
chr11	45667044	45667045	chr11:45667045:G:C	rs10769159	G	C	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr11	45667054	45667055	chr11:45667055:T:C	rs10769160	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	8.212035709405793	7.271491717019647	GCAATTATTAAGTACTCA
chr11	45680024	45680025	chr11:45680025:C:G	rs10734537	C	G	C	Msx3.mouse_homeodomain_1	10	1	-	7.386900283652751	6.9259476307403895	GCAATATTACGACAATTA
chr11	45768686	45768687	chr11:45768687:C:G	rs78647472	C	G	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr11	45933408	45933409	chr11:45933409:C:A	rs189712482	C	A	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr11	46051503	46051504	chr11:46051504:G:C	rs145770442	G	C	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr11	46871946	46871947	chr11:46871947:C:A	rs10769212	C	A	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr11	47507290	47507291	chr11:47507291:T:C	rs76570755	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.817075265363101	4.847644288994223	AGAATTATACAGCCATTA
chr11	49250791	49250792	chr11:49250792:G:A	rs35416991	G	A	g	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr11	50139420	50139421	chr11:50139421:G:T	rs1995044	G	T	.	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	50139421	50139422	chr11:50139422:C:T	rs1995045	C	T	.	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr11	54844792	54844793	chr11:54844793:C:A	rs75006988	C	A	.	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr11	55895310	55895311	chr11:55895311:G:A	rs2136307	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr11	55942419	55942420	chr11:55942420:C:T	rs61894204	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	12.08324182842799	11.235398957547304	GCAATAAGAAACAAATTA
chr11	56300578	56300579	chr11:56300579:A:C	rs12288127	A	C	C	Msx3.mouse_homeodomain_1	3	1	+	8.299561352214324	5.419386987681424	CCAATAAGTGTGCAATTT
chr11	56716569	56716570	chr11:56716570:C:T	rs578193	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr11	56716595	56716596	chr11:56716596:A:G	rs78965920	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr11	57187371	57187372	chr11:57187372:C:T	rs716745	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr11	57766717	57766718	chr11:57766718:A:G	rs12146692	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr11	58028653	58028654	chr11:58028654:C:T	rs72917859	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr11	58133703	58133704	chr11:58133704:G:A	rs1868881	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr11	58845602	58845603	chr11:58845603:T:C	rs4939231	T	C	.	Msx3.mouse_homeodomain_1	4	1	+	8.929991885140486	2.8314462052713503	CTAATTAAAAAAAAATTC
chr11	58880971	58880972	chr11:58880972:A:G	rs678727	A	G	.	Msx3.mouse_homeodomain_1	8	1	-	9.339156877150035	9.45686052567503	ACAATCATTAGCAAATTA
chr11	59011821	59011822	chr11:59011822:T:C	rs549248	T	C	.	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr11	59096793	59096794	chr11:59096794:C:A	rs11229798	C	A	c	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr11	59217243	59217244	chr11:59217244:G:A	rs1938593	G	A	A	Msx3.mouse_homeodomain_1	13	1	-	7.87500918681991	6.5767937804573195	GTAATTATTTAACCATCA
chr11	59667078	59667079	chr11:59667079:T:A	rs78043246	T	A	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr11	59667079	59667080	chr11:59667080:T:C	rs115458125	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr11	59756619	59756620	chr11:59756620:C:T	rs76068108	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr11	60949758	60949759	chr11:60949759:T:G	rs116481703	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	7.014901923361712	0.10743668643770588	GCAATCAAAGAACATTTG
chr11	60983393	60983394	chr11:60983394:T:C	rs7939636	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr11	61056052	61056053	chr11:61056053:G:A	rs184145305	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr11	61087368	61087369	chr11:61087369:A:G	rs12290944	A	G	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr11	61097200	61097201	chr11:61097201:T:C	rs145937607	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	61844237	61844238	chr11:61844238:T:C	rs117983270	T	C	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr11	61971072	61971073	chr11:61971073:T:G	rs12799017	T	G	G	Msx3.mouse_homeodomain_1	14	1	-	8.124608849630862	4.563629811376673	CCAAGTAACAAGCAATTT
chr11	62088534	62088535	chr11:62088535:A:G	rs371297	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr11	62105187	62105188	chr11:62105188:G:A	rs114818432	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr11	62386688	62386689	chr11:62386689:C:T	rs11605965	C	T	c	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr11	62754185	62754186	chr11:62754186:A:G	rs896399145	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	10.403963458128633	3.4964982212046283	GCAATCTTAAGCCAATTA
chr11	62754190	62754191	chr11:62754191:C:T	rs3829248	C	T	c	Msx3.mouse_homeodomain_1	10	1	-	10.403963458128633	11.480554629065107	GCAATCTTAAGCCAATTA
chr11	62946941	62946942	chr11:62946942:G:A	rs73490040	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr11	62946961	62946962	chr11:62946962:G:A	rs11231280	G	A	A	Msx3.mouse_homeodomain_1	8	1	+	7.6857957364592115	8.69234506930442	GAAATTAGGTAACATTTA
chr11	63531467	63531468	chr11:63531468:C:T	rs75233837	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr11	63561162	63561163	chr11:63561163:A:T	rs117951858	A	T	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	63572372	63572373	chr11:63572373:C:A	rs11602111	C	A	C	Msx3.mouse_homeodomain_1	10	1	-	7.485205428086142	8.068225075047497	CCAATTAAAGGCTCTTTA
chr11	64181227	64181228	chr11:64181228:A:G	rs61884757	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr11	64448257	64448258	chr11:64448258:T:C	rs12286249	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	10.218198280304534	5.630104061281384	TCAGTTAAAATGCAATTG
chr11	64473244	64473245	chr11:64473245:C:T	rs575515560	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr11	64473255	64473256	chr11:64473256:G:T	chr11:64473256:G:T	G	T	G	Msx3.mouse_homeodomain_1	11	1	-	9.500820942327302	8.218404376441626	TCAATTGCATGCAAATTA
chr11	64473278	64473279	chr11:64473279:T:C	rs240696	T	C	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr11	64485497	64485498	chr11:64485498:T:C	rs2845635	T	C	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr11	64714407	64714408	chr11:64714408:G:A	rs487662	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr11	64716176	64716177	chr11:64716177:C:T	rs79186158	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr11	64862247	64862248	chr11:64862248:A:G	rs4930685	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	12.171790470648752	11.231246478262605	CCCATTATGACCCAATTA
chr11	65425070	65425071	chr11:65425071:A:G	rs115818972	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr11	65482545	65482546	chr11:65482546:A:G	rs1450326021	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr11	65693485	65693486	chr11:65693486:A:G	rs17491607	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.200787449751213	3.231356473382337	CCAATGAGTCTCCAATTG
chr11	65771075	65771076	chr11:65771076:A:G	rs73492432	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	8.235923119648405	7.343834087577156	CAAATAACATAGAAATTA
chr11	66183829	66183830	chr11:66183830:G:C	rs75048144	G	C	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr11	66311889	66311890	chr11:66311890:T:G	rs33981819	T	G	T	Msx3.mouse_homeodomain_1	8	1	+	8.730056898814684	8.760778039127025	CTATTTACTGAGCAATTA
chr11	66311891	66311892	chr11:66311892:A:G	rs77116761	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	8.730056898814684	7.653465727878209	CTATTTACTGAGCAATTA
chr11	66633901	66633902	chr11:66633902:T:G	rs566673	T	G	T	Msx3.mouse_homeodomain_1	14	1	-	7.647259037572657	4.086279999318469	ATAAATAAAGGCCAATTA
chr11	67635813	67635814	chr11:67635814:A:G	rs12800028	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr11	67811120	67811121	chr11:67811121:T:A	rs7106972	T	A	-	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr11	68585348	68585349	chr11:68585349:A:G	rs73506207	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr11	68911315	68911316	chr11:68911316:C:T	rs188395003	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr11	69728842	69728843	chr11:69728843:T:C	rs948989	T	C	T	Msx3.mouse_homeodomain_1	0	1	+	8.846316393648529	9.669907137908709	TCAATTAAGGGACTATTA
chr11	69728861	69728862	chr11:69728862:A:T	rs151145976	A	T	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr11	69822368	69822369	chr11:69822369:C:T	rs3895665	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr11	69835326	69835327	chr11:69835327:G:A	rs10908234	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr11	69835334	69835335	chr11:69835335:A:G	rs182976550	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	69879074	69879075	chr11:69879075:T:C	rs7480774	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	69879105	69879106	chr11:69879106:G:T	rs144751625	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	8.835264804756989	6.134975427816525	CCAATATCAGTGCAATTA
chr11	70077192	70077193	chr11:70077193:C:T	rs2515279	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr11	70264701	70264702	chr11:70264702:C:T	rs72945129	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr11	70547767	70547768	chr11:70547768:A:C	rs10899152	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	9.734693307066589	4.661160530957259	GCACTTGGAAGACAATTA
chr11	70718210	70718211	chr11:70718211:A:G	rs1783611	A	G	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr11	71322914	71322915	chr11:71322915:G:A	rs10897970	G	A	g	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr11	72092915	72092916	chr11:72092916:G:A	rs482013	G	A	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr11	72111354	72111355	chr11:72111355:A:G	rs3750908	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr11	72387935	72387936	chr11:72387936:T:C	rs191097301	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr11	72751359	72751360	chr11:72751360:T:C	rs571799491	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.602803684064087	4.014709465040935	GCAGTTAAGTGGCAATTT
chr11	72870248	72870249	chr11:72870249:T:C	rs10898887	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr11	72924832	72924833	chr11:72924833:T:C	rs3207374	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	7.967073303044104	9.07558285820885	ATAATTACATGGAAATCA
chr11	73116715	73116716	chr11:73116716:T:G	rs12419915	T	G	G	Msx3.mouse_homeodomain_1	1	1	-	7.726482154125235	10.4267715310657	AAAAATAAAAAGCAATTA
chr11	73178553	73178554	chr11:73178554:T:C	rs57351800	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.311293804088702	3.7231995850655526	TCTATTAGATTACAATTG
chr11	73178567	73178568	chr11:73178568:A:G	rs57854130	A	G	A	Msx3.mouse_homeodomain_1	0	1	-	8.311293804088702	9.134884548348882	TCTATTAGATTACAATTG
chr11	73245641	73245642	chr11:73245642:C:T	rs143711642	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	74069932	74069933	chr11:74069933:C:G	rs826036	C	G	c	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr11	74539941	74539942	chr11:74539942:C:T	rs659581	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr11	74565225	74565226	chr11:74565226:C:T	rs7116713	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr11	75077576	75077577	chr11:75077577:G:A	rs116309270	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr11	75077628	75077629	chr11:75077629:G:A	rs9634028	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr11	75078413	75078414	chr11:75078414:C:T	rs78472272	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	7.520130182614195	8.564102482487908	GAAAGTAGAACCCAATTA
chr11	75082720	75082721	chr11:75082721:A:G	rs116801122	A	G	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr11	75190147	75190148	chr11:75190148:G:T	rs191609254	G	T	G	Msx3.mouse_homeodomain_1	17	1	-	9.451464078864705	14.038320659991214	GTGATTAATAAGCAATTC
chr11	75467824	75467825	chr11:75467825:C:T	rs113501686	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr11	76135654	76135655	chr11:76135655:A:C	rs17134594	A	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr11	76263165	76263166	chr11:76263166:A:T	rs587838	A	T	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr11	76347820	76347821	chr11:76347821:A:C	chr11:76347821:A:C	A	C	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr11	76452967	76452968	chr11:76452968:A:G	rs10793169	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.744378569029093	3.1562843500059423	ACAATTAGGAAGCCATTC
chr11	76820462	76820463	chr11:76820463:G:A	rs1440976	G	A	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr11	76911404	76911405	chr11:76911405:T:G	rs544268756	T	G	T	Msx3.mouse_homeodomain_1	8	1	-	10.92178734904629	10.002220524413737	CTAATCATATGCTAATTA
chr11	76963539	76963540	chr11:76963540:T:C	rs7122736	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	8.047992593608694	5.479832996425491	CTCATTATATGCTCATTA
chr11	77360921	77360922	chr11:77360922:G:A	rs2602473	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr11	77598520	77598521	chr11:77598521:A:G	rs112144854	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr11	77753324	77753325	chr11:77753325:C:T	rs72949616	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr11	78041465	78041466	chr11:78041466:C:G	rs7129673	C	G	C	Msx3.mouse_homeodomain_1	11	1	+	8.697394400476679	8.611928859766415	TCACTAAAATGCTAATTA
chr11	78051862	78051863	chr11:78051863:A:T	rs599613	A	T	A	Msx3.mouse_homeodomain_1	4	1	-	9.540147101947397	2.635125556211316	ATAATAAAATAAAAATTA
chr11	78304339	78304340	chr11:78304340:C:T	rs7939068	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	7.1995457486389105	7.529486701355009	GCAATCCCATACCCATTA
chr11	78319748	78319749	chr11:78319749:C:T	rs115466699	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	78449561	78449562	chr11:78449562:C:T	rs115179918	C	T	C	Msx3.mouse_homeodomain_1	3	1	+	9.211210948033123	6.964034972417932	GCACTTAGTATAAAATTA
chr11	78573872	78573873	chr11:78573873:T:C	rs143116603	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	9.882856427438053	3.7843107475689184	TTCATTAAAAATAAATTA
chr11	78933427	78933428	chr11:78933428:T:A	rs678096	T	A	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr11	79099747	79099748	chr11:79099748:T:C	rs870332	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr11	80298042	80298043	chr11:80298043:C:T	rs11232051	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr11	80298052	80298053	chr11:80298053:T:G	rs7396396	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	7.916403696060509	3.3295471149340004	CCAATTTAATGGCAATGA
chr11	80442764	80442765	chr11:80442765:A:G	rs2443952	A	G	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr11	80594892	80594893	chr11:80594893:C:A	rs4945424	C	A	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr11	80673655	80673656	chr11:80673656:A:G	rs4122080	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr11	80899499	80899500	chr11:80899500:G:C	rs4945449	G	C	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr11	81026081	81026082	chr11:81026082:T:C	rs78795705	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr11	81542106	81542107	chr11:81542107:A:G	rs1945685	A	G	A	Msx3.mouse_homeodomain_1	6	1	-	9.495919404494316	8.843185805134674	TTAATTTGGAAACAATTA
chr11	81542113	81542114	chr11:81542114:A:G	rs1945684	A	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	82275152	82275153	chr11:82275153:T:A	rs10897944	T	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	82289596	82289597	chr11:82289597:C:G	rs10488824	C	G	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr11	82475934	82475935	chr11:82475935:T:C	rs7124793	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	10.840579280946447	6.252485061923297	CTAATAATACAACAATTA
chr11	82841883	82841884	chr11:82841884:A:G	rs11233339	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr11	83069679	83069680	chr11:83069680:C:T	rs181422233	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr11	83193237	83193238	chr11:83193238:G:A	chr11:83193238:G:A	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr11	83389093	83389094	chr11:83389094:C:T	rs80300973	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr11	84054274	84054275	chr11:84054275:A:G	rs1945816	A	G	a	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr11	84825518	84825519	chr11:84825519:G:A	rs145543978	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	84829145	84829146	chr11:84829146:T:C	rs61897909	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr11	84889261	84889262	chr11:84889262:G:C	rs35683266	G	C	G	Msx3.mouse_homeodomain_1	12	1	-	6.9430271533831265	3.4436441347669686	GCTATTACCTAGCGCTTA
chr11	86063819	86063820	chr11:86063820:T:C	rs72950456	T	C	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr11	86117935	86117936	chr11:86117936:T:C	rs113950639	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	8.207432785363842	2.1088871054947096	ATCATTGAAGAGAAATTA
chr11	86303004	86303005	chr11:86303005:T:G	rs80021571	T	G	T	Msx3.mouse_homeodomain_1	12	1	-	7.83872532413909	10.350034083907914	CCAATTAAATTAAGCTTA
chr11	86359653	86359654	chr11:86359654:C:T	rs17745878	C	T	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr11	86579235	86579236	chr11:86579236:T:C	rs949351	T	C	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr11	86609265	86609266	chr11:86609266:T:C	rs12282010	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	7.32054123120841	2.7324470121852595	TCAATCAACCACACATTA
chr11	86669530	86669531	chr11:86669531:G:A	rs1170661376	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr11	86687396	86687397	chr11:86687397:G:A	rs72961771	G	A	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr11	86929822	86929823	chr11:86929823:T:C	rs4943964	T	C	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr11	87083497	87083498	chr11:87083498:G:A	rs17758984	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr11	87173782	87173783	chr11:87173783:C:G	rs604035	C	G	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr11	87173811	87173812	chr11:87173812:C:T	rs149160412	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	87279635	87279636	chr11:87279636:G:A	rs2054914	G	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr11	87370194	87370195	chr11:87370195:T:G	rs4944702	T	G	G	Msx3.mouse_homeodomain_1	9	1	-	9.698221974653649	8.39199167070932	TCAATTAGAATCTAGTTA
chr11	87401276	87401277	chr11:87401277:T:C	rs10501636	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr11	87513139	87513140	chr11:87513140:C:T	rs10751165	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr11	87742196	87742197	chr11:87742197:T:C	rs4344514	T	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr11	87743412	87743413	chr11:87743413:C:T	rs114704425	C	T	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr11	87899445	87899446	chr11:87899446:A:G	rs641902	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr11	87967349	87967350	chr11:87967350:G:A	rs4268535	G	A	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr11	87971201	87971202	chr11:87971202:G:A	rs4269950	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr11	88042542	88042543	chr11:88042543:C:A	rs608754	C	A	C	Msx3.mouse_homeodomain_1	1	1	-	9.657857606619089	12.074363592766723	GGAATTAACCTCCCATTA
chr11	88046123	88046124	chr11:88046124:C:T	rs665906	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr11	88059215	88059216	chr11:88059216:C:T	rs575744	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr11	88164637	88164638	chr11:88164638:T:A	rs75907009	T	A	-	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr11	88210977	88210978	chr11:88210978:T:C	rs10830389	T	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	88281070	88281071	chr11:88281071:T:C	rs595739	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	88371132	88371133	chr11:88371133:T:C	rs72968617	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	7.656428679162302	5.0882690819791	GACATTACACTGAAATTA
chr11	88371154	88371155	chr11:88371155:T:C	chr11:88371155:T:C	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr11	88554642	88554643	chr11:88554643:A:G	rs61901965	A	G	a	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr11	89336565	89336566	chr11:89336566:G:A	rs7947257	G	A	G	Msx3.mouse_homeodomain_1	12	1	+	8.863617536128551	9.851691794975885	GCAATTAACAGAGCATTA
chr11	90136445	90136446	chr11:90136446:C:T	rs117238370	C	T	.	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr11	90639134	90639135	chr11:90639135:G:A	rs660753	G	A	A	Msx3.mouse_homeodomain_1	11	1	+	6.233422015300791	5.03647099012538	CCACTCATCAAGCAATTC
chr11	90747348	90747349	chr11:90747349:C:T	rs2213088	C	T	T	Msx3.mouse_homeodomain_1	0	1	-	8.645709570515887	7.5372000153511385	GCTATTATAAGCCAGTTA
chr11	91093578	91093579	chr11:91093579:A:C	rs16915553	A	C	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr11	91104626	91104627	chr11:91104627:T:C	rs7945601	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.174350977335987	4.20492000096711	GCAATTATTTTTAAATCA
chr11	91134658	91134659	chr11:91134659:G:C	rs11019293	G	C	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr11	91159197	91159198	chr11:91159198:G:A	rs4275589	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr11	91717263	91717264	chr11:91717264:G:A	rs117681561	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr11	91797202	91797203	chr11:91797203:A:T	rs67157663	A	T	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr11	91861477	91861478	chr11:91861478:A:G	rs1873581	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr11	92052910	92052911	chr11:92052911:A:C	rs12790789	A	C	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr11	92088987	92088988	chr11:92088988:T:G	rs12800871	T	G	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr11	92089021	92089022	chr11:92089022:T:A	rs16916947	T	A	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr11	92298091	92298092	chr11:92298092:G:C	rs1202381	G	C	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr11	92501366	92501367	chr11:92501367:G:A	rs615011	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	92558336	92558337	chr11:92558337:G:A	rs570583	G	A	A	Msx3.mouse_homeodomain_1	3	1	-	8.73741726987777	6.490241294262579	CCACTTGAAAAGTAATTG
chr11	92830340	92830341	chr11:92830341:G:A	rs7924818	G	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	93250072	93250073	chr11:93250073:C:T	rs76451710	C	T	c	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr11	93522196	93522197	chr11:93522197:G:T	rs2248531	G	T	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr11	93608230	93608231	chr11:93608231:C:T	rs12222957	C	T	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr11	93814867	93814868	chr11:93814868:A:G	rs139952347	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr11	93952473	93952474	chr11:93952474:G:C	rs12792941	G	C	G	Msx3.mouse_homeodomain_1	0	1	-	7.790078105123457	8.157429614998069	CCAATCATACAACATTTA
chr11	94170222	94170223	chr11:94170223:T:C	chr11:94170223:T:C	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr11	94185183	94185184	chr11:94185184:T:C	rs1046173	T	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr11	94536646	94536647	chr11:94536647:A:G	rs2508782	A	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr11	94652860	94652861	chr11:94652861:T:G	rs7114222	T	G	G	Msx3.mouse_homeodomain_1	4	1	+	9.55935129235948	3.901362040409781	GCAATAAAAGTGCGATTG
chr11	94873522	94873523	chr11:94873523:A:G	rs333016	A	G	G	Msx3.mouse_homeodomain_1	14	1	-	10.376634065358715	11.142415378454082	CTAATTAAAAGGTATTTA
chr11	95587918	95587919	chr11:95587919:A:T	rs7947890	A	T	A	Msx3.mouse_homeodomain_1	6	1	+	10.629634492035013	7.03735228492249	TTAATTAAAAAGTATTTA
chr11	95734385	95734386	chr11:95734386:T:C	rs61902188	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr11	95898991	95898992	chr11:95898992:C:T	rs530914	C	T	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	95922691	95922692	chr11:95922692:A:C	rs16922701	A	C	A	Msx3.mouse_homeodomain_1	0	1	+	7.77435608572499	8.515514131015124	ACAATTATAGTGTGCTTA
chr11	95977828	95977829	chr11:95977829:G:T	rs7114741	G	T	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr11	95977867	95977868	chr11:95977868:G:T	rs7114756	G	T	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr11	96150119	96150120	chr11:96150120:G:A	rs140253044	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	96150124	96150125	chr11:96150125:C:A	rs144188743	C	A	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr11	96186162	96186163	chr11:96186163:A:G	rs145038609	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	9.488999429570015	7.431725250663816	GAAATTATACAGCAATAA
chr11	96237386	96237387	chr11:96237387:A:T	rs117487533	A	T	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr11	96255315	96255316	chr11:96255316:T:C	rs10501849	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	96308527	96308528	chr11:96308528:C:A	rs559477	C	A	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr11	96447771	96447772	chr11:96447772:C:T	rs12798148	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr11	96447781	96447782	chr11:96447782:C:G	rs76599299	C	G	C	Msx3.mouse_homeodomain_1	16	1	-	8.376912659547415	10.32549628206289	ACAATAATAAAGCAATGA
chr11	96799391	96799392	chr11:96799392:G:A	rs72980859	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr11	97740343	97740344	chr11:97740344:T:C	rs11603467	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	97772823	97772824	chr11:97772824:T:C	rs1960997	T	C	t	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr11	97961736	97961737	chr11:97961737:T:C	rs17222122	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr11	98270709	98270710	chr11:98270710:T:A	rs140189136	T	A	T	Msx3.mouse_homeodomain_1	2	1	-	7.303280896840119	4.147853278627498	TCAATCAGCAAACATTTA
chr11	98445272	98445273	chr11:98445273:C:T	rs147803550	C	T	C	Msx3.mouse_homeodomain_1	3	1	-	7.15249674347359	11.121927719842471	CCAGTTGAGAAGTGATTA
chr11	99016041	99016042	chr11:99016042:G:A	rs764346810	G	A	G	Msx3.mouse_homeodomain_1	5	1	-	7.941188647313585	10.334174389824089	GCACTCATGCTCTAATTA
chr11	99016049	99016050	chr11:99016050:T:G	chr11:99016050:T:G	T	G	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr11	99165161	99165162	chr11:99165162:G:A	rs7949592	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr11	99367007	99367008	chr11:99367008:T:C	rs187640284	T	C	T	Msx3.mouse_homeodomain_1	12	1	-	9.27510379805005	8.287029539202717	TCTATCAAAAACAAATTA
chr11	99532935	99532936	chr11:99532936:A:G	rs10893470	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	8.324353071571448	3.7362588525483	ATCCTTAAATACCAATTG
chr11	99535105	99535106	chr11:99535106:A:G	rs11220342	A	G	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr11	99921262	99921263	chr11:99921263:T:C	rs12276132	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	6.15355473703474	-0.7539104998892652	GCCATTTGCCTCCAATTG
chr11	99988428	99988429	chr11:99988429:C:A	rs7129985	C	A	c	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr11	100011483	100011484	chr11:100011484:C:T	rs770569	C	T	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr11	100448540	100448541	chr11:100448541:C:A	rs4589259	C	A	A	Msx3.mouse_homeodomain_1	2	1	+	8.2470019836147	10.629589425085422	GCCATTAAAGAGGAATTT
chr11	100673195	100673196	chr11:100673196:T:A	rs10895005	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	8.330245053125054	4.959458857246258	GCTTTTAACTTGCAATTA
chr11	100673201	100673202	chr11:100673202:C:A	rs6590804	C	A	A	Msx3.mouse_homeodomain_1	11	1	-	8.330245053125054	6.705480174851609	GCTTTTAACTTGCAATTA
chr11	100684338	100684339	chr11:100684339:G:A	rs61908737	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr11	100684354	100684355	chr11:100684355:T:C	rs10895008	T	C	T	Msx3.mouse_homeodomain_1	0	1	+	8.629479688929951	9.453070433190131	TTAATTGAAAAGTAATAA
chr11	100684382	100684383	chr11:100684383:A:G	rs4312035	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr11	100756597	100756598	chr11:100756598:C:T	rs7130855	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	10.6310759840742	9.185953320507718	CCAATCATAGGCCGATTA
chr11	101021022	101021023	chr11:101021023:T:G	rs529808	T	G	G	Msx3.mouse_homeodomain_1	16	1	+	6.34901399299146	1.2754812168821303	GGCATTGAAGTGCAATTG
chr11	101195521	101195522	chr11:101195522:C:T	rs17737180	C	T	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr11	101817615	101817616	chr11:101817616:G:A	rs7949648	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr11	101915457	101915458	chr11:101915458:G:C	rs949156	G	C	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr11	102305499	102305500	chr11:102305500:T:C	rs1894113	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr11	102536459	102536460	chr11:102536460:T:C	rs1943779	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr11	102548959	102548960	chr11:102548960:C:T	rs10895309	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr11	102589626	102589627	chr11:102589627:T:C	rs1711402	T	C	C	Msx3.mouse_homeodomain_1	11	1	-	9.293810994316805	10.490762019492214	ACAATTATCTGACAATTT
chr11	102596559	102596560	chr11:102596560:A:T	rs10895321	A	T	A	Msx3.mouse_homeodomain_1	12	1	-	13.241783916251645	12.175597820049305	CCAATTACCAGGTAATTA
chr11	102625730	102625731	chr11:102625731:C:T	rs2245897	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr11	102685361	102685362	chr11:102685362:C:T	rs902872166	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr11	102930184	102930185	chr11:102930185:T:C	rs4754052	T	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr11	102930199	102930200	chr11:102930200:G:A	chr11:102930200:G:A	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr11	103368477	103368478	chr11:103368478:A:G	rs313373	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr11	103588065	103588066	chr11:103588066:A:T	rs11225886	A	T	A	Msx3.mouse_homeodomain_1	5	1	-	9.309114336653046	6.487712289496666	ACAAGTAACAAGTAATTA
chr11	103659622	103659623	chr11:103659623:G:A	rs10488754	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr11	103659637	103659638	chr11:103659638:G:T	rs4554859	G	T	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr11	103659663	103659664	chr11:103659664:C:G	rs2408747	C	G	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr11	103683093	103683094	chr11:103683094:C:G	chr11:103683094:C:G	C	G	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr11	103730028	103730029	chr11:103730029:C:T	rs77726130	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.92849808301007	6.218267664026361	CTAATCTAATCCTAATTA
chr11	103769080	103769081	chr11:103769081:C:T	rs77547283	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	103796484	103796485	chr11:103796485:C:T	rs76647884	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr11	103899186	103899187	chr11:103899187:A:G	rs4754996	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr11	103899221	103899222	chr11:103899222:G:A	rs77932704	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr11	104001464	104001465	chr11:104001465:T:C	rs61904889	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr11	104150025	104150026	chr11:104150026:A:T	rs10895593	A	T	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr11	104589862	104589863	chr11:104589863:A:C	rs12419253	A	C	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	104968726	104968727	chr11:104968727:G:A	rs56197155	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr11	105430091	105430092	chr11:105430092:A:T	rs7943561	A	T	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr11	105648837	105648838	chr11:105648838:G:A	rs116758895	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr11	105719470	105719471	chr11:105719471:G:C	chr11:105719471:G:C	G	C	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr11	105739478	105739479	chr11:105739479:A:G	rs7928594	A	G	G	Msx3.mouse_homeodomain_1	11	1	-	13.302665762815863	15.012896181799572	TTAATTATATATCAATTA
chr11	106319762	106319763	chr11:106319763:C:T	rs118111466	C	T	c	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr11	106319774	106319775	chr11:106319775:A:G	rs2409624	A	G	a	Msx3.mouse_homeodomain_1	9	1	-	11.095055298378174	10.202966266306923	TTAATTACATGCAAATTA
chr11	106353141	106353142	chr11:106353142:A:G	rs7952658	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr11	106608795	106608796	chr11:106608796:T:A	rs1938614	T	A	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	106697183	106697184	chr11:106697184:T:C	rs10502075	T	C	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr11	106988216	106988217	chr11:106988217:G:A	rs2513107	G	A	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr11	107006668	107006669	chr11:107006669:C:G	rs73555836	C	G	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr11	107015331	107015332	chr11:107015332:C:A	rs2445114	C	A	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	107272666	107272667	chr11:107272667:T:C	rs11212112	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.20970708388565	4.621612864862501	ACAATTACCTGACAATCA
chr11	107351147	107351148	chr11:107351148:A:C	rs79479861	A	C	A	Msx3.mouse_homeodomain_1	9	1	+	8.194639322437013	6.88840901849268	CCCATTAGGAAACTATTA
chr11	107425427	107425428	chr11:107425428:T:C	rs11212226	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.130252185912734	3.160821209543857	GCAATTGTAACACAATGA
chr11	107587315	107587316	chr11:107587316:G:T	rs11212289	G	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr11	107659550	107659551	chr11:107659551:A:G	rs694990	A	G	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr11	107743774	107743775	chr11:107743775:A:C	rs1351517	A	C	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr11	107785628	107785629	chr11:107785629:C:T	chr11:107785629:C:T	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr11	107789389	107789390	chr11:107789390:T:C	rs79952586	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr11	107970371	107970372	chr11:107970372:T:C	rs78054498	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	11.095055298378174	8.578186670441095	TTAATTACATGCAAATTA
chr11	108777018	108777019	chr11:108777019:T:C	rs75149150	T	C	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr11	109076699	109076700	chr11:109076700:C:T	rs35447002	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	109389482	109389483	chr11:109389483:T:C	rs902226277	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr11	109985123	109985124	chr11:109985124:G:C	rs73547106	G	C	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr11	110097189	110097190	chr11:110097190:A:G	rs6589110	A	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr11	110162329	110162330	chr11:110162330:T:C	rs80311774	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr11	110337800	110337801	chr11:110337801:G:C	rs190170344	G	C	G	Msx3.mouse_homeodomain_1	11	1	-	9.799525520715996	9.714059980005732	TTCATTATACTCTAATTA
chr11	110471821	110471822	chr11:110471822:C:G	rs2298511	C	G	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr11	110520994	110520995	chr11:110520995:C:G	rs882536	C	G	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr11	110541066	110541067	chr11:110541067:C:A	rs485051	C	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr11	110764180	110764181	chr11:110764181:A:G	rs7952191	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	8.697394974852209	6.255317747920652	CCAATTATGTAGCATTTG
chr11	110853840	110853841	chr11:110853841:A:T	rs17504219	A	T	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr11	110966223	110966224	chr11:110966224:T:C	rs11213678	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr11	111010686	111010687	chr11:111010687:T:A	rs7941579	T	A	T	Msx3.mouse_homeodomain_1	9	1	+	8.026520216574692	8.440661488447775	ACACTTAAGTGCTAATTG
chr11	111445609	111445610	chr11:111445610:G:A	rs7127339	G	A	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr11	111800671	111800672	chr11:111800672:T:C	rs11214006	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr11	112166795	112166796	chr11:112166796:C:T	rs1376110403	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr11	112166796	112166797	chr11:112166797:G:A	rs148499203	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr11	112293498	112293499	chr11:112293499:A:C	rs115402648	A	C	A	Msx3.mouse_homeodomain_1	1	1	-	9.380218595022253	6.963712608874622	ATTATTAAACAATAATTA
chr11	112422342	112422343	chr11:112422343:T:C	rs1540074	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	7.90045409510602	5.332294497922818	TTCTTTAAAAGCCAATTA
chr11	112607783	112607784	chr11:112607784:C:T	rs4245092	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr11	112962336	112962337	chr11:112962337:G:C	rs183758453	G	C	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	112976137	112976138	chr11:112976138:C:T	rs11214443	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	8.463322020044835	7.0181993564783545	ATAATAAAAGTACAATTG
chr11	113137437	113137438	chr11:113137438:T:G	rs10891510	T	G	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr11	113170095	113170096	chr11:113170096:G:A	rs4143165	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	7.393701586453352	5.948578922886869	GCAATTGTCAAACGATTT
chr11	113532924	113532925	chr11:113532925:C:T	rs7116732	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr11	113591447	113591448	chr11:113591448:T:C	rs3923973	T	C	C	Msx3.mouse_homeodomain_1	8	1	-	9.384647271892627	8.37809793904742	TCAATCAGAAGCCAATTT
chr11	113891448	113891449	chr11:113891449:C:T	rs79988481	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr11	113899632	113899633	chr11:113899633:G:A	rs1176758	G	A	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr11	114072035	114072036	chr11:114072036:G:A	rs12419950	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr11	114072044	114072045	chr11:114072045:A:T	rs2852793	A	T	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr11	114232696	114232697	chr11:114232697:A:C	rs79997337	A	C	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr11	114285595	114285596	chr11:114285596:T:C	rs2604294	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	10.244508141346671	9.167916970410193	GTAATTAATAACAAATAA
chr11	114438537	114438538	chr11:114438538:C:T	rs11214991	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr11	114559972	114559973	chr11:114559973:A:G	chr11:114559973:A:G	A	G	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr11	114739077	114739078	chr11:114739078:A:T	rs1712785	A	T	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr11	114784024	114784025	chr11:114784025:A:G	rs1945533	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	9.697020666746361	6.572071513152509	ATGCTTACAAAGCAATTA
chr11	115276770	115276771	chr11:115276771:C:T	rs12788053	C	T	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr11	115317207	115317208	chr11:115317208:G:C	rs11215482	G	C	G	Msx3.mouse_homeodomain_1	12	1	-	10.062130338496578	6.562747319880421	GCAATTGAAGATCAATTT
chr11	115410085	115410086	chr11:115410086:G:A	rs763909566	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr11	115466337	115466338	chr11:115466338:C:T	rs184229124	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	9.376668628518708	9.258964979993713	AGCATTATCTACCAATTA
chr11	115584917	115584918	chr11:115584918:T:G	rs7121755	T	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr11	115628343	115628344	chr11:115628344:T:C	rs2186873	T	C	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr11	115998887	115998888	chr11:115998888:G:A	rs12284734	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr11	116031898	116031899	chr11:116031899:C:G	rs1791917	C	G	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr11	116059914	116059915	chr11:116059915:G:T	rs10891914	G	T	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr11	116096638	116096639	chr11:116096639:C:A	rs550628665	C	A	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr11	116114413	116114414	chr11:116114414:C:T	rs56834533	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.532589504250921	6.0874668406844386	CCAATTAATAAGCGCTAA
chr11	116311558	116311559	chr11:116311559:A:G	rs11604300	A	G	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr11	116311586	116311587	chr11:116311587:C:T	rs10502216	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr11	116473876	116473877	chr11:116473877:C:T	rs11215951	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr11	116614023	116614024	chr11:116614024:T:C	rs505848	T	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	116949371	116949372	chr11:116949372:T:C	rs12420518	T	C	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr11	116990802	116990803	chr11:116990803:G:C	rs623423	G	C	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr11	117000049	117000050	chr11:117000050:G:A	rs7930264	G	A	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr11	117028335	117028336	chr11:117028336:T:C	rs747814702	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr11	117478685	117478686	chr11:117478686:A:G	rs56057635	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	7.256043261491135	7.37374691001613	GCAATTCATGGGCAATAA
chr11	117585644	117585645	chr11:117585645:G:C	rs495420	G	C	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	117882420	117882421	chr11:117882421:T:C	rs74620952	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.017776993144212	3.429682774121062	TTAATCAGGCAGCAATTG
chr11	117919626	117919627	chr11:117919627:C:T	rs11216620	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr11	117919650	117919651	chr11:117919651:C:T	rs544502564	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr11	118217240	118217241	chr11:118217241:A:G	rs1715430	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	7.398685593274966	8.50719514843971	ACCATTAAGTTGAAATCA
chr11	118230730	118230731	chr11:118230731:G:A	rs1715424	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	8.346456236053948	7.149505210878539	GCAATTAGTAGGGAATTT
chr11	118252772	118252773	chr11:118252773:A:G	rs1715457	A	G	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr11	118252801	118252802	chr11:118252802:A:G	rs1715456	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.837684156144741	1.7391384762756106	TTAATAAACACCCAATTT
chr11	118301819	118301820	chr11:118301820:C:T	rs894677	C	T	c	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr11	118727428	118727429	chr11:118727429:T:C	rs543692	T	C	t	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr11	118849032	118849033	chr11:118849033:C:T	rs7116715	C	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr11	118853406	118853407	chr11:118853407:G:A	rs12276533	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	10.040096618014818	9.216505873754642	CTCATTATACGCTAATTA
chr11	119096580	119096581	chr11:119096581:A:G	rs7759	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	8.184735264493863	9.293244819658607	ACACTTAATTTACAATCA
chr11	119492175	119492176	chr11:119492176:T:C	rs549303	T	C	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr11	119592141	119592142	chr11:119592142:A:G	rs11608077	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	10.932185650086069	6.344091431062918	CTCATTATATGCTAATTA
chr11	119716815	119716816	chr11:119716816:C:A	rs548562297	C	A	C	Msx3.mouse_homeodomain_1	1	1	+	6.501910931384013	3.8016215544435474	GCGATCAGAGTCTAATCA
chr11	119759537	119759538	chr11:119759538:C:G	rs7124166	C	G	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr11	119801446	119801447	chr11:119801447:A:G	rs4938724	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	7.201075296973479	5.143801118067282	CCGATCAATCTGCAATCA
chr11	119805221	119805222	chr11:119805222:T:G	rs7926586	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	6.154068171954025	3.7714807304833005	TCACTCAAGCCCCGATTA
chr11	120096952	120096953	chr11:120096953:C:A	rs1787027	C	A	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr11	120236403	120236404	chr11:120236404:G:A	rs1316281	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr11	120609042	120609043	chr11:120609043:A:G	rs74573926	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	6.291534198126027	-0.6159310387979786	GTCATTACCCCACAATTG
chr11	120635579	120635580	chr11:120635580:A:G	rs79680914	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr11	120832942	120832943	chr11:120832943:G:A	rs115007090	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr11	120863709	120863710	chr11:120863710:T:G	rs4344499	T	G	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr11	120920253	120920254	chr11:120920254:C:T	rs10892643	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr11	121415648	121415649	chr11:121415649:T:G	rs114051908	T	G	T	Msx3.mouse_homeodomain_1	16	1	+	9.231972175040426	4.1584393989310975	GTAATTTTAAAAAAATTA
chr11	121415668	121415669	chr11:121415669:C:T	rs12361197	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	121458670	121458671	chr11:121458671:C:T	rs79308088	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	7.969712275231724	6.7727612500563135	TAAATTAGGTCGAAATTA
chr11	121723077	121723078	chr11:121723078:C:A	rs754200559	C	A	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr11	121763625	121763626	chr11:121763626:G:T	rs1944689	G	T	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr11	121932805	121932806	chr11:121932806:T:A	rs1219444	T	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr11	122069702	122069703	chr11:122069703:A:G	rs549798	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.71875228599507	4.7493213096261915	TCAATTATTCATTGATTA
chr11	122192874	122192875	chr11:122192875:C:T	rs549180	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr11	122224996	122224997	chr11:122224997:C:G	rs78939541	C	G	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr11	123055495	123055496	chr11:123055496:A:G	rs76535928	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	8.265078344347877	8.382781992872872	CCTATAAATGTCTAATTA
chr11	123060400	123060401	chr11:123060401:T:G	rs375071377	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	9.819767366707412	7.4371799252366895	ACAATTACACAGTAATTT
chr11	123069630	123069631	chr11:123069631:T:C	rs73610554	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	9.317354886086324	9.435058534611322	ATACTTACTTAGTAATTA
chr11	123172677	123172678	chr11:123172678:T:G	rs4259834	T	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr11	123174752	123174753	chr11:123174753:G:A	rs12573887	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	10.06266934660307	11.06921867944828	GAAATTAGGAAGCACTTA
chr11	123219246	123219247	chr11:123219247:A:G	rs513136	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr11	123230586	123230587	chr11:123230587:A:G	rs58348134	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr11	123308216	123308217	chr11:123308217:C:G	rs145613115	C	G	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr11	123693097	123693098	chr11:123693098:C:T	rs35268676	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr11	123926412	123926413	chr11:123926413:T:A	rs17684986	T	A	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	123998875	123998876	chr11:123998876:C:T	rs61908589	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	5.908840523322913	5.136000346581017	GCCCTTCAGGGGCAATTA
chr11	124643478	124643479	chr11:124643479:A:T	rs7940161	A	T	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr11	125111363	125111364	chr11:125111364:A:T	chr11:125111364:A:T	A	T	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr11	125112251	125112252	chr11:125112252:A:G	rs73012301	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr11	125112302	125112303	chr11:125112303:C:T	rs11219906	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	125339842	125339843	chr11:125339843:C:T	rs11220028	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr11	125570040	125570041	chr11:125570041:T:C	rs74823426	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr11	126039460	126039461	chr11:126039461:T:G	rs930868895	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr11	126092107	126092108	chr11:126092108:G:C	rs74902566	G	C	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr11	126160122	126160123	chr11:126160123:T:C	rs116020384	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	8.201385878309038	5.076436724715185	ACAATAAAGGGCCAATTT
chr11	126401742	126401743	chr11:126401743:A:G	rs11220473	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr11	126433515	126433516	chr11:126433516:A:G	chr11:126433516:A:G	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	7.277088800144964	6.2004976292084875	TTGGTTACCTACCAATTA
chr11	126534028	126534029	chr11:126534029:A:T	rs596168	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	9.7987156199204	3.7198022005625426	GTCATTGGATAGTAATTA
chr11	126619967	126619968	chr11:126619968:C:G	rs588974	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr11	126638996	126638997	chr11:126638997:A:G	rs57651982	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	10.416151439293646	8.023165696783146	TCAATTAAAAAAAAATCA
chr11	126886679	126886680	chr11:126886680:A:C	rs7932969	A	C	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr11	127006571	127006572	chr11:127006572:A:G	rs57355842	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	11.15657212179898	7.187141145430101	CTAATTATGTGGAAATTA
chr11	127007818	127007819	chr11:127007819:T:G	rs676846	T	G	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr11	127028579	127028580	chr11:127028580:G:A	rs7945958	G	A	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr11	127101430	127101431	chr11:127101431:A:C	rs12225946	A	C	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	127138200	127138201	chr11:127138201:C:T	rs74463313	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	127138210	127138211	chr11:127138211:A:G	rs7112176	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	10.233883574368281	3.3264183374442764	GCAATTAGAGGGAAATTG
chr11	127243616	127243617	chr11:127243617:A:G	rs116514843	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	9.950749508191997	11.059259063356741	ATAATTAATTAACAATAA
chr11	127461784	127461785	chr11:127461785:A:G	rs7924331	A	G	T	Msx3.mouse_homeodomain_1	0	1	+	9.013145504164779	10.121655059329523	ATAATTAAGGAACATTTA
chr11	128053852	128053853	chr11:128053853:G:A	rs545007242	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	128071255	128071256	chr11:128071256:G:A	rs11221146	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr11	128139044	128139045	chr11:128139045:T:C	rs11221165	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr11	128586177	128586178	chr11:128586178:T:C	rs183204773	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr11	128830833	128830834	chr11:128830834:C:T	rs138007409	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr11	128946834	128946835	chr11:128946835:T:C	rs3897567	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr11	128946852	128946853	chr11:128946853:C:T	rs934914343	C	T	C	Msx3.mouse_homeodomain_1	9	1	-	9.116192929133845	10.056736921519992	GTTCTTAAGGTGCAATTA
chr11	130246611	130246612	chr11:130246612:C:G	rs117345882	C	G	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr11	130648017	130648018	chr11:130648018:A:C	rs67059833	A	C	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr11	130648056	130648057	chr11:130648057:G:A	rs67256239	G	A	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr11	130710180	130710181	chr11:130710181:T:C	rs73576082	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	130847313	130847314	chr11:130847314:C:T	rs73022834	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr11	130873938	130873939	chr11:130873939:T:C	rs75225772	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.618213447837538	1.519667767968405	ACTATTGAAAGCCAATCA
chr11	130979458	130979459	chr11:130979459:T:A	rs10791108	T	A	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr11	131196130	131196131	chr11:131196131:G:A	rs79610691	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr11	131219447	131219448	chr11:131219448:G:C	rs1793614	G	C	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr11	131257248	131257249	chr11:131257249:C:G	rs2511770	C	G	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr11	131307583	131307584	chr11:131307584:A:G	rs113677680	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	7.013561329094707	6.0730173367085625	CCAATCCAAATCTAATTG
chr11	131697080	131697081	chr11:131697081:G:C	rs182382928	G	C	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr11	131697081	131697082	chr11:131697082:G:T	rs187399025	G	T	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr11	131823814	131823815	chr11:131823815:T:C	rs11222804	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.646552942045197	5.677121965676318	GCCATTGAAATCCACTTA
chr11	133240060	133240061	chr11:133240061:A:G	rs1453826	A	G	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr11	133386235	133386236	chr11:133386236:T:C	rs916865112	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr11	133576656	133576657	chr11:133576657:G:A	rs150090173	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr11	133732433	133732434	chr11:133732434:C:T	rs11223572	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr11	134391255	134391256	chr11:134391256:A:G	rs11223780	A	G	G	Msx3.mouse_homeodomain_1	13	1	+	9.250969489914294	7.193695311008097	CTAATTACCAGGCAGTTA
chr11	134572598	134572599	chr11:134572599:A:G	rs4362161	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr11	134744288	134744289	chr11:134744289:T:G	rs12807834	T	G	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr11	134850278	134850279	chr11:134850279:C:T	rs7118455	C	T	t	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr12	104866	104867	chr12:104867:A:C	chr12:104867:A:C	A	C	.	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr12	273611	273612	chr12:273612:T:C	rs77253661	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr12	502364	502365	chr12:502365:G:A	rs11063302	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr12	608123	608124	chr12:608124:G:T	rs1005729857	G	T	G	Msx3.mouse_homeodomain_1	1	1	+	9.166247856276762	11.582753842424392	CGAATTGTCCACCAATTA
chr12	837711	837712	chr12:837712:A:G	rs2158501	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	7.555562358505385	2.967468139482235	TAAGTTAGGTTGCAATTA
chr12	904009	904010	chr12:904010:A:G	rs10849582	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr12	948667	948668	chr12:948668:T:A	rs11571388	T	A	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr12	1272093	1272094	chr12:1272094:T:C	rs11061677	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	7.944770886606473	1.846225206737341	CCCATCACTTAGAAATTA
chr12	1310543	1310544	chr12:1310544:T:G	rs7979057	T	G	T	Msx3.mouse_homeodomain_1	5	1	-	11.01315541357344	11.441571718219318	GTAATAAAGCAGTAATTA
chr12	2017607	2017608	chr12:2017608:C:G	rs2067490	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr12	2328708	2328709	chr12:2328709:C:T	rs7316184	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr12	2647828	2647829	chr12:2647829:C:A	rs216032	C	A	A	Msx3.mouse_homeodomain_1	11	1	+	11.977862984996285	10.695446419110613	CTAATAAAAAACAAATTA
chr12	2652359	2652360	chr12:2652360:G:A	rs73247415	G	A	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr12	2769954	2769955	chr12:2769955:A:G	rs73242845	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr12	3055191	3055192	chr12:3055192:A:T	rs4766032	A	T	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr12	3570612	3570613	chr12:3570613:T:A	rs917601	T	A	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr12	4203626	4203627	chr12:4203627:T:C	rs2429654	T	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr12	4418894	4418895	chr12:4418895:A:C	rs7311326	A	C	A	Msx3.mouse_homeodomain_1	14	1	+	6.807396088705671	3.2464170504514827	GCAATTGCAGGACAATTC
chr12	4630615	4630616	chr12:4630616:A:G	rs2299834	A	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr12	4766448	4766449	chr12:4766449:G:T	rs766506	G	T	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr12	4856239	4856240	chr12:4856240:A:C	rs4766301	A	C	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	4856250	4856251	chr12:4856251:T:G	rs7133031	T	G	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr12	5068699	5068700	chr12:5068700:T:C	rs535428	T	C	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr12	5330543	5330544	chr12:5330544:C:A	rs4529951	C	A	A	Msx3.mouse_homeodomain_1	7	1	+	6.7649217912191935	8.15480833792395	GTACTCACCCTGTAATTA
chr12	5695000	5695001	chr12:5695001:G:A	rs4930785	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr12	5731057	5731058	chr12:5731058:T:C	rs34097431	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr12	5971428	5971429	chr12:5971429:G:A	rs11063965	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	6.191195767606599	4.746073104040117	CCCCTTAGGAACCAGTTA
chr12	6053008	6053009	chr12:6053009:T:C	rs73034900	T	C	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr12	6367725	6367726	chr12:6367726:A:G	rs7963228	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.153347406677066	3.183916430308188	TCAATTATGCCTCACTTA
chr12	6431903	6431904	chr12:6431904:A:T	rs117765687	A	T	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr12	7373198	7373199	chr12:7373199:C:T	rs10845007	C	T	T	Msx3.mouse_homeodomain_1	14	1	+	7.197552141516998	6.431770828421631	GCGATAAATCAGCACTTA
chr12	7588750	7588751	chr12:7588751:C:T	rs73047198	C	T	c	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr12	7738809	7738810	chr12:7738810:A:G	rs9300243	A	G	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr12	7874219	7874220	chr12:7874220:T:C	rs7313512	T	C	t	Msx3.mouse_homeodomain_1	3	1	-	7.17372082062212	3.2042898442532435	TCAATTTGTACCCCATTA
chr12	7971665	7971666	chr12:7971666:A:T	rs11056714	A	T	A	Msx3.mouse_homeodomain_1	17	1	+	8.020956083800357	4.65016988792156	CCCCTTTAAAAACAATTA
chr12	8606848	8606849	chr12:8606849:C:T	rs2518144	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr12	8845098	8845099	chr12:8845099:C:T	rs73038740	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr12	8987290	8987291	chr12:8987291:T:C	rs10842665	T	C	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	9221749	9221750	chr12:9221750:T:C	rs972110	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr12	9725412	9725413	chr12:9725413:G:A	rs13377908	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr12	9768343	9768344	chr12:9768344:G:A	rs7309875	G	A	A	Msx3.mouse_homeodomain_1	7	1	-	7.907345332589947	8.237286285306045	CTACTTACTGATTAATTA
chr12	9770232	9770233	chr12:9770233:A:T	rs724668	A	T	T	Msx3.mouse_homeodomain_1	4	1	-	8.437826983254553	1.5328054375184714	ACACTTATTTGCAAATTA
chr12	9770254	9770255	chr12:9770255:G:A	rs724667	G	A	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr12	9972893	9972894	chr12:9972894:A:G	rs73048876	A	G	-	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr12	10096913	10096914	chr12:10096914:G:A	rs10845040	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr12	10191787	10191788	chr12:10191788:C:T	rs4545645	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	9.355867049907431	8.247357494742687	GCAATCAACAAGTATTTA
chr12	10214206	10214207	chr12:10214207:G:A	rs11834419	G	A	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr12	10311417	10311418	chr12:10311418:T:A	rs17206564	T	A	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr12	10573261	10573262	chr12:10573262:T:C	rs56945826	T	C	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr12	11017299	11017300	chr12:11017300:C:T	rs118040338	C	T	C	Msx3.mouse_homeodomain_1	9	1	-	7.736929392971725	8.677473385357871	CCAATTACCGTAACATTA
chr12	11513516	11513517	chr12:11513517:C:T	rs115086793	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr12	11691715	11691716	chr12:11691716:G:A	rs76091398	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	7.358892457884234	9.416166636790429	TCCATCATGAGCCGATTA
chr12	11801817	11801818	chr12:11801818:T:G	rs761261302	T	G	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr12	11906614	11906615	chr12:11906615:C:G	rs79039026	C	G	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr12	11998673	11998674	chr12:11998674:C:T	rs1574096	C	T	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr12	12024987	12024988	chr12:12024988:A:G	rs948433752	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	8.530892634553606	5.405943480959752	CCTATTAGAGCCCCATTA
chr12	12033033	12033034	chr12:12033034:T:C	rs2277391	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr12	12069099	12069100	chr12:12069100:G:T	rs2448063	G	T	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr12	12483299	12483300	chr12:12483300:C:T	rs933575	C	T	T	Msx3.mouse_homeodomain_1	0	1	+	12.15898817813984	11.335397433879663	CTTATTAACAGCCAATTA
chr12	12769388	12769389	chr12:12769389:A:C	rs7297457	A	C	C	Msx3.mouse_homeodomain_1	4	1	-	12.175800789919752	6.517811537970052	GTAATTAAGTTGTGATTA
chr12	12769404	12769405	chr12:12769405:T:C	rs7300798	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr12	12947397	12947398	chr12:12947398:T:G	rs4763908	T	G	T	Msx3.mouse_homeodomain_1	0	1	-	10.804772875861737	11.545930921151868	ATGATTAAAACTCAATTA
chr12	13279153	13279154	chr12:13279154:T:C	rs58689945	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	7.088545211857594	3.963596058263741	GCAATTACTGGGCAACTA
chr12	13573813	13573814	chr12:13573814:C:G	rs7953807	C	G	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr12	13713804	13713805	chr12:13713805:C:T	rs2268113	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr12	13795130	13795131	chr12:13795131:G:A	rs220558	G	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr12	14368247	14368248	chr12:14368248:T:C	rs10845988	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	10.664126401528712	9.723582409142569	CTAATTAATAAACATTTA
chr12	14391141	14391142	chr12:14391142:A:G	rs79900388	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr12	14418879	14418880	chr12:14418880:G:A	rs7967823	G	A	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr12	14949586	14949587	chr12:14949587:G:A	rs10846092	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr12	15152092	15152093	chr12:15152093:C:T	rs3748302	C	T	C	Msx3.mouse_homeodomain_1	3	1	+	7.47670907223637	5.2295330966211795	GCACTTAAAGTACCATTG
chr12	15532299	15532300	chr12:15532300:A:G	rs10846192	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr12	15701868	15701869	chr12:15701869:G:A	rs944991236	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr12	16120350	16120351	chr12:16120351:C:G	rs1799479	C	G	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr12	16120373	16120374	chr12:16120374:T:A	rs1671461	T	A	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr12	16301336	16301337	chr12:16301337:T:C	rs59922659	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr12	16347618	16347619	chr12:16347619:T:G	chr12:16347619:T:G	T	G	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr12	17472905	17472906	chr12:17472906:A:G	rs34725836	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	7.143905267519885	6.20336127513374	CCCGTTAAAACCCAATCA
chr12	18239885	18239886	chr12:18239886:A:T	rs10770321	A	T	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr12	18253792	18253793	chr12:18253793:G:A	rs10770336	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr12	18413262	18413263	chr12:18413263:A:T	rs11044085	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	7.008924993751038	2.826516530911073	CAACTTGGAGGCCAATTA
chr12	18643376	18643377	chr12:18643377:G:C	rs644554	G	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr12	18688180	18688181	chr12:18688181:G:A	rs10505830	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr12	18818732	18818733	chr12:18818733:G:A	rs542649959	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr12	18818739	18818740	chr12:18818740:C:T	rs117477636	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	18939255	18939256	chr12:18939256:A:C	rs4764437	A	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr12	19154793	19154794	chr12:19154794:C:A	rs1514830	C	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr12	19187118	19187119	chr12:19187119:T:C	rs75398828	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	7.933962215090495	5.540976472579992	GCCATTAGAAACAAGTTA
chr12	19633055	19633056	chr12:19633056:G:A	rs10770509	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr12	19692604	19692605	chr12:19692605:G:A	rs10841311	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	19749772	19749773	chr12:19749773:C:T	rs7959875	C	T	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr12	19873241	19873242	chr12:19873242:A:G	rs1532209	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.508890754332281	5.539459777963404	ATAATGAAATTTCAATTA
chr12	19894251	19894252	chr12:19894252:C:T	rs80165279	C	T	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr12	20409659	20409660	chr12:20409660:A:G	rs10505865	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	8.650098713369893	1.742633476445889	ACTATTAAAAAATCATTA
chr12	20409684	20409685	chr12:20409685:A:G	rs10841512	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr12	20426004	20426005	chr12:20426005:C:T	rs11045236	C	T	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	20619951	20619952	chr12:20619952:A:T	rs73080764	A	T	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr12	21170337	21170338	chr12:21170338:A:G	rs11045816	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr12	21339002	21339003	chr12:21339003:A:T	rs2857468	A	T	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr12	21546181	21546182	chr12:21546182:T:C	rs3765091	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	9.648013697939131	2.7405484610151247	GTAATTATCTACAAATCA
chr12	21642837	21642838	chr12:21642838:A:T	rs114899517	A	T	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr12	21851346	21851347	chr12:21851347:C:T	rs7966768	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	8.309732484474182	7.5368923077322885	AACATTATAGTGTAATTA
chr12	22003663	22003664	chr12:22003664:T:A	rs7314084	T	A	T	Msx3.mouse_homeodomain_1	5	1	+	6.842233003234445	4.020830956078063	GGAATTAAGGGCACATTA
chr12	23098624	23098625	chr12:23098625:G:A	rs73072696	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr12	23342546	23342547	chr12:23342547:C:T	rs10770977	C	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr12	23422717	23422718	chr12:23422718:A:G	rs7312798	A	G	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr12	24135218	24135219	chr12:24135219:T:C	rs1909355	T	C	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr12	24236725	24236726	chr12:24236726:G:T	rs1464500	G	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr12	24393402	24393403	chr12:24393403:C:G	rs4963570	C	G	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr12	24753374	24753375	chr12:24753375:G:A	rs1245628583	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr12	25436812	25436813	chr12:25436813:T:C	rs7306702	T	C	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr12	25436830	25436831	chr12:25436831:G:A	rs7135826	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	6.823841331458733	5.715331776293989	GCACTTGGAGACTCATTA
chr12	25502587	25502588	chr12:25502588:C:T	rs10505967	C	T	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr12	25659432	25659433	chr12:25659433:T:A	rs1511009	T	A	A	Msx3.mouse_homeodomain_1	3	1	-	10.42820994036208	5.30085960021399	CCAATTATTCACCATTTA
chr12	25860427	25860428	chr12:25860428:A:G	rs74070902	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	26090691	26090692	chr12:26090692:C:T	rs16930105	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr12	26238290	26238291	chr12:26238291:A:G	rs140320840	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	9.885973441759532	7.492987699249029	AAAATTAATAAAAAATTA
chr12	26537631	26537632	chr12:26537632:A:C	rs10842750	A	C	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr12	26848570	26848571	chr12:26848571:G:A	rs11048728	G	A	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr12	26848607	26848608	chr12:26848608:A:G	rs11048729	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr12	27001237	27001238	chr12:27001238:G:T	rs75014618	G	T	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr12	27011315	27011316	chr12:27011316:C:T	rs12319254	C	T	c	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr12	27011316	27011317	chr12:27011317:G:A	rs61923439	G	A	g	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	27139829	27139830	chr12:27139830:A:G	rs841608	A	G	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr12	27184173	27184174	chr12:27184174:A:G	rs34883993	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr12	27324772	27324773	chr12:27324773:C:T	rs189589246	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr12	27400807	27400808	chr12:27400808:A:C	rs1037920	A	C	A	Msx3.mouse_homeodomain_1	5	1	-	7.855967381391355	3.4133856039241914	CCCATTGAATTCTAATCA
chr12	27428973	27428974	chr12:27428974:G:C	rs3933658	G	C	a	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr12	27461697	27461698	chr12:27461698:C:T	rs67723130	C	T	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr12	27610971	27610972	chr12:27610972:G:A	rs28406053	G	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr12	27841963	27841964	chr12:27841964:G:C	rs10506028	G	C	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	28032714	28032715	chr12:28032715:T:C	rs79677774	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr12	28131907	28131908	chr12:28131908:A:T	rs11049361	A	T	A	Msx3.mouse_homeodomain_1	16	1	-	9.754296853128185	5.869458925605127	CCAATCAACAAGTACTTA
chr12	28191754	28191755	chr12:28191755:A:G	rs12304474	A	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr12	28192510	28192511	chr12:28192511:T:A	rs12367188	T	A	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr12	28611140	28611141	chr12:28611141:G:T	rs142088980	G	T	g	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr12	28611152	28611153	chr12:28611153:T:G	rs112992242	T	G	T	Msx3.mouse_homeodomain_1	5	1	+	6.926134960705247	2.483553183238081	CCACTTAACAGACAATGA
chr12	29033703	29033704	chr12:29033704:T:C	rs17653960	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr12	29200803	29200804	chr12:29200804:A:G	rs4105126	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr12	29226028	29226029	chr12:29226029:C:G	rs9919747	C	G	c	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr12	29231496	29231497	chr12:29231497:C:T	rs76431058	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	6.701823504895805	7.593912536967053	GCAATTGTGCACCCATCA
chr12	29283809	29283810	chr12:29283810:A:C	rs16934110	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	12.486481221368386	8.241465414896222	GTAATTATGAACCAATCA
chr12	29299479	29299480	chr12:29299480:T:C	rs6487802	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr12	29428768	29428769	chr12:29428769:G:C	rs7978026	G	C	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr12	29546154	29546155	chr12:29546155:C:T	rs717197	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr12	29717750	29717751	chr12:29717751:T:C	rs302382	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	9.3574453184107	10.465954873575445	ATAATTACTAAATGATTA
chr12	29727016	29727017	chr12:29727017:G:C	rs389508	G	C	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr12	30149511	30149512	chr12:30149512:T:C	rs2351213	T	C	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr12	30269915	30269916	chr12:30269916:T:C	rs1429630	T	C	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr12	30269942	30269943	chr12:30269943:A:G	rs4931311	A	G	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr12	30358807	30358808	chr12:30358808:A:G	rs12582684	A	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr12	30614206	30614207	chr12:30614207:G:C	rs3850959	G	C	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr12	30899075	30899076	chr12:30899076:A:G	rs79425801	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.361484010786185	4.392053034417306	GTCATTTCATCCCAATTA
chr12	30936404	30936405	chr12:30936405:G:A	rs10771782	G	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr12	31022032	31022033	chr12:31022033:G:A	rs73082862	G	A	g	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr12	31072904	31072905	chr12:31072905:T:C	rs7313639	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	8.043164872323684	6.96657370138721	GTACTTAAATAGCCATTT
chr12	31097734	31097735	chr12:31097735:G:A	rs7971579	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr12	31128311	31128312	chr12:31128312:T:C	rs41482048	T	C	.	Msx3.mouse_homeodomain_1	3	1	-	7.499245609417715	3.529814633048836	CCCATTAAAATGCATTTT
chr12	31573934	31573935	chr12:31573935:T:C	rs1677154	T	C	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr12	31618754	31618755	chr12:31618755:G:A	rs560239	G	A	a	Msx3.mouse_homeodomain_1	12	1	-	8.640346922882852	7.195224259316368	CTCATTATTCACCCATTA
chr12	31747257	31747258	chr12:31747258:G:C	rs186321465	G	C	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr12	31844690	31844691	chr12:31844691:G:C	rs9738368	G	C	G	Msx3.mouse_homeodomain_1	11	1	+	10.042469413919449	10.127934954629712	CCAATGAAAAGGAAATTA
chr12	31844700	31844701	chr12:31844701:C:A	rs9738365	C	A	c	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	32255285	32255286	chr12:32255286:A:C	rs2728801	A	C	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr12	32595196	32595197	chr12:32595197:G:T	rs7306314	G	T	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	32595197	32595198	chr12:32595198:A:T	rs7305985	A	T	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr12	32644743	32644744	chr12:32644744:T:C	rs75583772	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	9.329301388612937	7.272027209706738	CCCATCAGCATGTAATTA
chr12	32986970	32986971	chr12:32986971:G:A	rs1811678	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr12	33988806	33988807	chr12:33988807:C:T	rs73107025	C	T	T	Msx3.mouse_homeodomain_1	10	1	-	11.003701350382364	12.080292521318839	ATAATTAATGGCAAATTA
chr12	34033797	34033798	chr12:34033798:A:T	rs1197569	A	T	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr12	38083336	38083337	chr12:38083337:G:A	rs182237703	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	38332492	38332493	chr12:38332493:G:A	rs114813993	G	A	g	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr12	38555726	38555727	chr12:38555727:T:C	rs1875611	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	38711407	38711408	chr12:38711408:C:T	rs11169222	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	7.72413558000818	6.876292709127495	GCAATGAAATCACAATCA
chr12	39124386	39124387	chr12:39124387:C:T	rs767450115	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr12	40559675	40559676	chr12:40559676:C:T	rs73117506	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr12	40587337	40587338	chr12:40587338:C:T	rs1873675	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr12	40806723	40806724	chr12:40806724:G:A	rs1584097	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr12	40806726	40806727	chr12:40806727:C:A	rs1584096	C	A	A	Msx3.mouse_homeodomain_1	2	1	+	7.134572349306079	9.517159790776805	CTCATTAAGTCTCAATCA
chr12	40854772	40854773	chr12:40854773:T:G	rs560052814	T	G	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr12	41343362	41343363	chr12:41343363:G:A	rs7298953	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	8.228642245515907	6.783519581949425	AAAATTGAAAGGCCATTA
chr12	42054887	42054888	chr12:42054888:A:G	rs17090927	A	G	t	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr12	42135433	42135434	chr12:42135434:T:A	rs35986152	T	A	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr12	42135469	42135470	chr12:42135470:T:C	rs1009210368	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr12	42757925	42757926	chr12:42757926:G:A	rs2897590	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr12	43425331	43425332	chr12:43425332:T:C	rs11182067	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	6.391374832060328	2.421943855691451	CCCATCACCTAGCTATTA
chr12	43461995	43461996	chr12:43461996:A:G	rs17093327	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	9.332022912907767	6.7638633157245645	TATATTAGTAACCAATTA
chr12	43805178	43805179	chr12:43805179:A:T	rs78356591	A	T	A	Msx3.mouse_homeodomain_1	5	1	-	8.013185536901602	5.191783489745224	GAAATTAGAACGAAATTG
chr12	43809097	43809098	chr12:43809098:G:C	rs11182273	G	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr12	43823512	43823513	chr12:43823513:A:C	rs11182285	A	C	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	43978740	43978741	chr12:43978741:A:G	rs1015368250	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr12	44525901	44525902	chr12:44525902:C:T	rs74085078	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr12	44604991	44604992	chr12:44604992:G:A	rs12314678	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr12	45547242	45547243	chr12:45547243:C:T	rs4269980	C	T	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr12	45732238	45732239	chr12:45732239:G:T	rs150917708	G	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr12	45912505	45912506	chr12:45912506:G:A	rs11183234	G	A	G	Msx3.mouse_homeodomain_1	5	1	-	6.92171518701399	9.314700929524491	CCAAACAAAATCTAATTA
chr12	46556138	46556139	chr12:46556139:C:T	chr12:46556139:C:T	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	7.738501521131227	8.630590553202477	CTAATTTAACAGCAGTTA
chr12	46556941	46556942	chr12:46556942:C:T	rs571937881	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr12	46695801	46695802	chr12:46695802:G:A	rs7973775	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr12	47080182	47080183	chr12:47080183:A:G	rs571422807	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr12	47276762	47276763	chr12:47276763:T:C	rs117574488	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr12	47346530	47346531	chr12:47346531:C:G	rs11183893	C	G	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr12	47346563	47346564	chr12:47346564:C:G	rs11183894	C	G	G	Msx3.mouse_homeodomain_1	0	1	-	11.091161099460518	10.723809589585908	GTACTTAGAAAGAAATTA
chr12	47748634	47748635	chr12:47748635:C:G	rs757281	C	G	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr12	47995046	47995047	chr12:47995047:C:T	rs2248990	C	T	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr12	47996396	47996397	chr12:47996397:T:C	rs369438810	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	7.496107714665002	4.371158561071149	GCCATTAAAAACCAAATG
chr12	48029449	48029450	chr12:48029450:C:T	rs1859441	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr12	48034366	48034367	chr12:48034367:C:T	rs4760615	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr12	48306498	48306499	chr12:48306499:A:G	rs2732477	A	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr12	48348705	48348706	chr12:48348706:A:G	rs2130096	A	G	g	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	48374483	48374484	chr12:48374484:T:C	rs1489105	T	C	t	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr12	48557106	48557107	chr12:48557107:T:C	rs61941973	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	10.567428948023174	7.999269350839973	GGAATTATTAAGAAATTA
chr12	49232961	49232962	chr12:49232962:A:T	rs116799812	A	T	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr12	50275410	50275411	chr12:50275411:A:C	rs540616908	A	C	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr12	50510519	50510520	chr12:50510520:A:G	rs7302749	A	G	a	Msx3.mouse_homeodomain_1	10	1	-	8.71320825525386	7.669235955380144	GTAATTAGAATACAAATA
chr12	50776332	50776333	chr12:50776333:T:A	rs7297504	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr12	51012973	51012974	chr12:51012974:C:G	rs74092398	C	G	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr12	51025773	51025774	chr12:51025774:C:A	rs1007899401	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	7.127391194867761	4.616082435098935	CCAATCTACCCACAATTA
chr12	51597547	51597548	chr12:51597548:C:T	rs11169883	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr12	51949585	51949586	chr12:51949586:T:C	rs58617820	T	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr12	51967868	51967869	chr12:51967869:C:G	rs111930700	C	G	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr12	52164423	52164424	chr12:52164424:C:T	rs7959177	C	T	T	Msx3.mouse_homeodomain_1	2	1	+	9.551677214214717	8.778837037472822	GTCATTATTAAGCACTTA
chr12	52164426	52164427	chr12:52164427:T:C	rs7974112	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	9.551677214214717	7.158691471704217	GTCATTATTAAGCACTTA
chr12	52167847	52167848	chr12:52167848:A:C	rs11170029	A	C	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	52167849	52167850	chr12:52167850:A:G	rs11170030	A	G	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr12	52190722	52190723	chr12:52190723:T:G	rs10735840	T	G	T	Msx3.mouse_homeodomain_1	8	1	+	6.508020711216401	6.538741851528742	GCACATAGTAAGCAATTA
chr12	52230496	52230497	chr12:52230497:T:C	rs11170055	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr12	52262935	52262936	chr12:52262936:C:T	rs61914220	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.788277704881544	7.34315504131506	CCGAGTAGAAAGCAATTA
chr12	52310240	52310241	chr12:52310241:A:G	rs61915664	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr12	52385914	52385915	chr12:52385915:C:T	rs2156783	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr12	52390497	52390498	chr12:52390498:C:T	rs80145915	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr12	52585041	52585042	chr12:52585042:T:C	rs191215079	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	9.36095951310773	6.792799915924529	TCAATTAACAAATATTTA
chr12	52620484	52620485	chr12:52620485:A:G	rs149795465	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr12	53069213	53069214	chr12:53069214:G:A	rs2364154	G	A	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr12	53338198	53338199	chr12:53338199:C:T	rs111936967	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	53338199	53338200	chr12:53338200:G:A	rs2886129	G	A	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr12	53441711	53441712	chr12:53441712:T:G	rs926993948	T	G	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr12	53696392	53696393	chr12:53696393:T:A	rs144748798	T	A	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr12	53869069	53869070	chr12:53869070:T:A	rs7305034	T	A	A	Msx3.mouse_homeodomain_1	7	1	-	11.13976063990977	10.079815045921112	GCAATTTAAAAAAAATTA
chr12	54017994	54017995	chr12:54017995:A:C	rs563734008	A	C	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr12	54018005	54018006	chr12:54018006:C:T	rs146096084	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr12	54208247	54208248	chr12:54208248:G:A	rs73114523	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr12	54608943	54608944	chr12:54608944:T:C	rs937309	T	C	t	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr12	54608993	54608994	chr12:54608994:C:T	rs937310	C	T	c	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	54945746	54945747	chr12:54945747:C:G	rs2264791	C	G	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr12	55106408	55106409	chr12:55106409:G:A	rs12306170	G	A	g	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr12	56386038	56386039	chr12:56386039:A:C	rs12306512	A	C	C	Msx3.mouse_homeodomain_1	8	1	-	10.912211128603367	10.942932268915712	CCCATTAGTGTACAATTA
chr12	57008316	57008317	chr12:57008317:T:C	rs576529578	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr12	57181799	57181800	chr12:57181800:G:A	chr12:57181800:G:A	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr12	57843488	57843489	chr12:57843489:C:T	rs145652993	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	58491338	58491339	chr12:58491339:T:C	rs12823793	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr12	59037790	59037791	chr12:59037791:T:C	rs11172882	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	9.448416434656075	6.880256837472872	GTCATTAGCCACAAATTA
chr12	59059589	59059590	chr12:59059590:T:C	rs907345	T	C	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr12	60395214	60395215	chr12:60395215:T:A	rs2731464	T	A	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr12	60843050	60843051	chr12:60843051:C:G	rs12578166	C	G	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr12	61489635	61489636	chr12:61489636:T:C	rs1453696	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr12	61700778	61700779	chr12:61700779:A:C	rs10877713	A	C	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr12	62015500	62015501	chr12:62015501:T:A	rs78154814	T	A	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr12	62186646	62186647	chr12:62186647:C:T	rs77999070	C	T	c	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr12	62215219	62215220	chr12:62215220:T:C	rs76652987	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr12	62523085	62523086	chr12:62523086:A:G	rs7976993	A	G	a	Msx3.mouse_homeodomain_1	17	1	+	8.42542717792674	5.857267580743538	ACACTTATATGCCACTTA
chr12	62695732	62695733	chr12:62695733:T:C	rs11174605	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr12	62935820	62935821	chr12:62935821:C:T	rs1043340947	C	T	C	Msx3.mouse_homeodomain_1	16	1	-	7.916302308779948	9.104997157366217	ACAATTAAATACTAATGG
chr12	63046113	63046114	chr12:63046114:C:T	rs968994	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	10.985191488723991	10.137348617843308	ACACTTGGAAACCAATTA
chr12	63396094	63396095	chr12:63396095:G:A	rs481358	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr12	63931295	63931296	chr12:63931296:G:A	rs80034307	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr12	64102582	64102583	chr12:64102583:C:T	rs146634978	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	64361241	64361242	chr12:64361242:T:C	rs12318559	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	10.613150627529524	7.48820147393567	AAAATAAAAAAACAATTA
chr12	64368658	64368659	chr12:64368659:T:C	rs10878166	T	C	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr12	64396090	64396091	chr12:64396091:T:G	rs74551383	T	G	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr12	64566949	64566950	chr12:64566950:G:A	rs78049567	G	A	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr12	64566950	64566951	chr12:64566951:T:C	rs75940097	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	64682423	64682424	chr12:64682424:G:A	rs11175513	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	64682436	64682437	chr12:64682437:G:T	rs61931658	G	T	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	64682854	64682855	chr12:64682855:C:A	rs867281485	C	A	C	Msx3.mouse_homeodomain_1	16	1	-	7.880723341058718	12.954256117168047	ACAGTTAAAATCCAATGA
chr12	64772365	64772366	chr12:64772366:C:A	rs1261862	C	A	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	65123644	65123645	chr12:65123645:G:T	rs556141253	G	T	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr12	65465042	65465043	chr12:65465043:A:G	rs115857920	A	G	a	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	65528475	65528476	chr12:65528476:T:C	rs12304766	T	C	C	Msx3.mouse_homeodomain_1	4	1	-	7.5124337333511475	8.759466027137531	ATAAATATGAAGCAATTA
chr12	65821511	65821512	chr12:65821512:C:G	rs2612069	C	G	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr12	66159933	66159934	chr12:66159934:A:G	rs17825943	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr12	66501535	66501536	chr12:66501536:T:C	rs12813874	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr12	66654632	66654633	chr12:66654633:A:G	rs73128817	A	G	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	66853533	66853534	chr12:66853534:C:T	rs1504310	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr12	67222802	67222803	chr12:67222803:C:T	rs2043800	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	6.44067801110075	6.3229743625757555	TCAATTAACCCCCGATGA
chr12	67237662	67237663	chr12:67237663:G:A	rs1252435	G	A	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	67624114	67624115	chr12:67624115:G:A	rs1731543	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr12	67773440	67773441	chr12:67773441:T:C	rs10492207	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr12	67794437	67794438	chr12:67794438:G:T	rs2870794	G	T	G	Msx3.mouse_homeodomain_1	5	1	-	7.147170263944736	6.718753959298856	GTAATCAGACAGAAATCA
chr12	67934554	67934555	chr12:67934555:G:A	rs10161160	G	A	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr12	68863961	68863962	chr12:68863962:G:C	rs12305993	G	C	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr12	69161776	69161777	chr12:69161777:T:G	rs10431582	T	G	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr12	69162210	69162211	chr12:69162211:A:G	rs12821798	A	G	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr12	69338245	69338246	chr12:69338246:A:T	rs78483473	A	T	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr12	69388537	69388538	chr12:69388538:G:A	rs315118	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	7.9843198787982965	7.13647700791761	ACTATTAAAGTACACTTA
chr12	69501631	69501632	chr12:69501632:A:C	rs500308	A	C	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	69647186	69647187	chr12:69647187:T:A	rs6581900	T	A	T	Msx3.mouse_homeodomain_1	3	1	-	8.344677064237302	3.21732672408921	ACAATCAAATTCTATTTA
chr12	69927440	69927441	chr12:69927441:T:A	rs1269212	T	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr12	70155195	70155196	chr12:70155196:A:G	rs61929317	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr12	70610092	70610093	chr12:70610093:C:G	rs2304822	C	G	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr12	70843508	70843509	chr12:70843509:A:C	rs11178451	A	C	A	Msx3.mouse_homeodomain_1	0	1	-	9.023835510864867	10.214777764999663	TTCATTAAAGTGCACTTA
chr12	71426875	71426876	chr12:71426876:G:A	rs9325197	G	A	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr12	71426887	71426888	chr12:71426888:T:C	rs17109668	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr12	71426903	71426904	chr12:71426904:T:C	rs10160968	T	C	c	Msx3.mouse_homeodomain_1	2	1	-	8.428156454429992	5.911287826492916	GCAATTACAATCTCATAA
chr12	71475031	71475032	chr12:71475032:G:A	rs67284654	G	A	A	Msx3.mouse_homeodomain_1	11	1	-	7.011568256107826	5.301337837124117	CCAATTAGTCACAGATCA
chr12	71576635	71576636	chr12:71576636:T:A	rs75981235	T	A	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr12	71780289	71780290	chr12:71780290:C:G	rs10879336	C	G	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr12	71780328	71780329	chr12:71780329:A:G	rs144206035	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr12	71780336	71780337	chr12:71780337:T:C	rs11830831	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	71787525	71787526	chr12:71787526:A:G	rs12310799	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr12	72263601	72263602	chr12:72263602:A:G	rs4254109	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr12	72491773	72491774	chr12:72491774:A:C	rs3782362	A	C	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr12	72806559	72806560	chr12:72806560:G:T	rs34631143	G	T	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr12	72806576	72806577	chr12:72806577:C:T	rs10879496	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr12	74356312	74356313	chr12:74356313:C:A	rs12828562	C	A	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr12	74533207	74533208	chr12:74533208:C:T	rs17113675	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr12	74619960	74619961	chr12:74619961:T:C	rs2131714	T	C	C	Msx3.mouse_homeodomain_1	17	1	-	9.02708252886704	6.458922931683838	ACAATTAACCAGCAAATA
chr12	74840658	74840659	chr12:74840659:C:G	rs144745913	C	G	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr12	75234784	75234785	chr12:75234785:G:A	rs2250378	G	A	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr12	75536706	75536707	chr12:75536707:T:G	rs2054518	T	G	t	Msx3.mouse_homeodomain_1	9	1	+	8.941615016775387	8.415212296262322	GCAATTGTGTGGGAATTA
chr12	75685166	75685167	chr12:75685167:C:T	rs11180633	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr12	75709580	75709581	chr12:75709581:C:T	rs73363685	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.987692306697267	6.2774618877135575	AGAATTAGGACCAAATTA
chr12	76037357	76037358	chr12:76037358:T:C	rs1009862	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr12	76208438	76208439	chr12:76208439:G:A	rs17042110	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	7.229345137288968	8.305936308225446	GTAATTAGGAGCCAATAT
chr12	76264449	76264450	chr12:76264450:A:T	rs1517728	A	T	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr12	76464392	76464393	chr12:76464393:G:A	rs75413870	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	77014460	77014461	chr12:77014461:A:G	rs437413	A	G	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr12	77162387	77162388	chr12:77162388:T:A	rs7303154	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	12.24322975828394	7.916469406934384	CTAATTAAATAACAATTT
chr12	77446161	77446162	chr12:77446162:T:C	rs939475	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr12	77745674	77745675	chr12:77745675:G:T	rs10859303	G	T	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr12	77836237	77836238	chr12:77836238:A:G	rs79531370	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr12	77849102	77849103	chr12:77849103:C:G	rs115151211	C	G	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr12	78430362	78430363	chr12:78430363:A:T	rs1839321	A	T	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr12	78630943	78630944	chr12:78630944:C:T	rs12372696	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr12	78793383	78793384	chr12:78793384:G:C	rs565694824	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr12	79330276	79330277	chr12:79330277:T:C	rs61928823	T	C	t	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr12	79367444	79367445	chr12:79367445:G:T	rs1245776	G	T	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr12	79408395	79408396	chr12:79408396:C:T	rs4609662	C	T	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr12	79688707	79688708	chr12:79688708:T:A	rs115334225	T	A	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr12	80064543	80064544	chr12:80064544:C:T	rs527965139	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr12	80064544	80064545	chr12:80064545:G:A	rs73353198	G	A	g	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr12	80101515	80101516	chr12:80101516:T:G	rs73355059	T	G	.	Msx3.mouse_homeodomain_1	7	1	+	8.424142083095468	8.374272139760532	TGCATTATAATTCAATTA
chr12	80553384	80553385	chr12:80553385:T:C	rs116299009	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr12	80681076	80681077	chr12:80681077:A:T	rs1027390	A	T	T	Msx3.mouse_homeodomain_1	16	1	-	8.946631885034131	5.061793957511073	GAAATTAGGCAGCAATTT
chr12	81209944	81209945	chr12:81209945:G:A	rs117113551	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr12	81455020	81455021	chr12:81455021:G:A	rs1357262	G	A	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr12	81950461	81950462	chr12:81950462:A:G	rs11115114	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	81999457	81999458	chr12:81999458:T:C	rs77983358	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr12	83362426	83362427	chr12:83362427:G:C	rs7488808	G	C	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr12	83625967	83625968	chr12:83625968:A:T	rs1397897	A	T	A	Msx3.mouse_homeodomain_1	3	1	+	7.993474813872941	2.8661244737248492	TTAATCACTAGGAAATTA
chr12	84186445	84186446	chr12:84186446:C:T	rs12305026	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr12	84556076	84556077	chr12:84556077:T:C	chr12:84556077:T:C	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	8.248306427572878	5.806229200641321	AGAATCATGAACTAATTA
chr12	84599659	84599660	chr12:84599660:G:A	rs11116485	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr12	84925370	84925371	chr12:84925371:C:T	rs1864660	C	T	C	Msx3.mouse_homeodomain_1	5	1	+	6.874765910701897	9.2677516532124	CAAATCAGAGTGCACTTA
chr12	85352382	85352383	chr12:85352383:T:C	rs1877481	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.946974953597266	5.358880734574117	TCAATAGAATATCAATTA
chr12	86133269	86133270	chr12:86133270:G:A	rs7957457	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr12	86191052	86191053	chr12:86191053:A:T	rs55832610	A	T	A	Msx3.mouse_homeodomain_1	10	1	+	9.537121808953943	9.043550284978823	ACAATCAGGAACCAATTT
chr12	86292131	86292132	chr12:86292132:A:G	rs2406116	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.1840431262635525	2.595948907240402	CCACTCAGGAAGGAATTA
chr12	86725279	86725280	chr12:86725280:T:G	rs2702775	T	G	G	Msx3.mouse_homeodomain_1	1	1	-	9.384233919378952	12.084523296319416	CAAATTAAGTAACAATTT
chr12	87031047	87031048	chr12:87031048:T:C	rs1897634	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr12	87847978	87847979	chr12:87847979:A:G	rs73418417	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	8.622674543072637	8.29273359035654	CTTATTGTTTTGCAATTA
chr12	87935494	87935495	chr12:87935495:T:C	rs4842469	T	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr12	87960745	87960746	chr12:87960746:T:C	rs11104688	T	C	.	Msx3.mouse_homeodomain_1	4	1	+	7.44130786914734	1.3427621892782056	CCAATTCAAAGCACATTA
chr12	88559881	88559882	chr12:88559882:A:G	rs4590952	A	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr12	88560181	88560182	chr12:88560182:G:A	rs4474514	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	88955504	88955505	chr12:88955505:T:C	rs11105118	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	8.972262130878654	10.080771686043398	ACCATTACTTTATAATTA
chr12	89073056	89073057	chr12:89073057:A:C	rs146849590	A	C	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr12	89417211	89417212	chr12:89417212:C:G	rs12319447	C	G	C	Msx3.mouse_homeodomain_1	11	1	+	7.967756723147102	7.8822911824368385	TTAATTGGGAGCCCATTA
chr12	89465061	89465062	chr12:89465062:G:A	rs11105294	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr12	89733598	89733599	chr12:89733599:G:C	rs144449587	G	C	G	Msx3.mouse_homeodomain_1	8	1	+	8.755648224587482	8.842630732800135	GTAATTAAGGTGAAATAA
chr12	89751406	89751407	chr12:89751407:G:C	rs10506980	G	C	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr12	89775367	89775368	chr12:89775368:C:T	rs1880981	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	7.563220076369235	6.71537720548855	CCAGTTAACATTTGATTA
chr12	90512855	90512856	chr12:90512856:A:G	rs1529637	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	7.345968723292892	4.903891496361336	GTCATTAGCAGACACTTA
chr12	90962262	90962263	chr12:90962263:T:G	rs12820238	T	G	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr12	91723432	91723433	chr12:91723433:A:G	rs1873983	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr12	92131899	92131900	chr12:92131900:G:T	rs697921	G	T	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr12	92185594	92185595	chr12:92185595:C:G	rs17790040	C	G	c	Msx3.mouse_homeodomain_1	12	1	+	7.02315837629808	3.523775357681921	AGAATCAAGAGGCAATTG
chr12	92192109	92192110	chr12:92192110:T:C	rs806210	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr12	92303500	92303501	chr12:92303501:T:C	rs432569	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.797314638363589	3.209220419340439	ATATTTAAAAGCCAATTG
chr12	92443198	92443199	chr12:92443199:A:T	rs11615288	A	T	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr12	92473552	92473553	chr12:92473553:T:C	rs11106569	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.995734304941395	1.0882690680173912	CCAATTAAAATTCAGTTT
chr12	92641155	92641156	chr12:92641156:A:C	rs6538342	A	C	C	Msx3.mouse_homeodomain_1	16	1	-	6.502542212137483	1.4290094360281551	CCAATTCCAGTCCAATTC
chr12	92687361	92687362	chr12:92687362:C:T	rs4760484	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr12	92953857	92953858	chr12:92953858:A:G	rs4418851	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.557338278632614	0.6498730417086087	GCAATTACACCACCATTG
chr12	93004142	93004143	chr12:93004143:C:T	rs116408698	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr12	93280598	93280599	chr12:93280599:T:A	rs4761643	T	A	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr12	93354368	93354369	chr12:93354369:A:C	rs11106995	A	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr12	93364709	93364710	chr12:93364710:C:T	rs7954893	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr12	93413100	93413101	chr12:93413101:G:A	rs4020454	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr12	93762373	93762374	chr12:93762374:C:T	rs7962567	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr12	93798475	93798476	chr12:93798476:A:G	rs12581704	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.950984917215454	4.981553940846576	CCTATGAGATAGCAATTA
chr12	93958070	93958071	chr12:93958071:G:A	rs2217774	G	A	A	Msx3.mouse_homeodomain_1	11	1	-	8.911322406230568	7.2010919872468575	GCAATTACTATCATATTA
chr12	94128366	94128367	chr12:94128367:T:C	rs556892949	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr12	94208128	94208129	chr12:94208129:T:C	rs7298875	T	C	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr12	94498974	94498975	chr12:94498975:A:G	rs12814380	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr12	94532864	94532865	chr12:94532865:A:G	rs554663466	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	10.298033065455414	6.328602089086535	CCAATTAGAAACCTATTG
chr12	94973243	94973244	chr12:94973244:G:C	rs146061566	G	C	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr12	95083497	95083498	chr12:95083498:A:G	rs2043367	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	7.841028065221603	5.272868468038401	ACAATATTAGGGCAATTA
chr12	95168761	95168762	chr12:95168762:A:T	rs11832540	A	T	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	95443140	95443141	chr12:95443141:G:T	rs2596751	G	T	G	Msx3.mouse_homeodomain_1	7	1	+	7.808972673935158	7.858842617270095	ACCATTAGAGGGTAATTG
chr12	95443153	95443154	chr12:95443154:A:G	rs2658704	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr12	95574919	95574920	chr12:95574920:C:T	rs10735331	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.165960725515255	6.9690097003398455	CCAGTTGGAGAGTAATTA
chr12	95628822	95628823	chr12:95628823:A:T	rs112307703	A	T	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr12	95774626	95774627	chr12:95774627:G:A	rs4533108	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr12	95785010	95785011	chr12:95785011:C:G	rs76629482	C	G	C	Msx3.mouse_homeodomain_1	12	1	+	9.789079388281333	6.289696369665174	GCAATAAATTTGCAATAA
chr12	95806909	95806910	chr12:95806910:A:G	rs56243500	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr12	96402410	96402411	chr12:96402411:T:C	rs577813174	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr12	96487652	96487653	chr12:96487653:C:G	rs11834364	C	G	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr12	96862775	96862776	chr12:96862776:G:A	rs57386210	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr12	96903223	96903224	chr12:96903224:G:A	rs147781867	G	A	-	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr12	97005249	97005250	chr12:97005250:G:A	rs78626884	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr12	98081903	98081904	chr12:98081904:C:T	rs17424400	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr12	98346837	98346838	chr12:98346838:T:G	rs143920280	T	G	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr12	98824425	98824426	chr12:98824426:A:G	rs201422	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	9.408828366207931	3.3102826863387973	CTCATTGTAGGCCAATTA
chr12	99232774	99232775	chr12:99232775:G:C	rs10777965	G	C	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr12	99590356	99590357	chr12:99590357:C:A	rs1275651	C	A	c	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr12	100576628	100576629	chr12:100576629:C:T	rs35715	C	T	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr12	100847411	100847412	chr12:100847412:T:G	rs12307903	T	G	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr12	101067829	101067830	chr12:101067830:T:A	rs694265	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	10.072675953733498	5.745915602383943	TCAATTATTAAGAAATTG
chr12	101604376	101604377	chr12:101604377:T:G	rs146721497	T	G	T	Msx3.mouse_homeodomain_1	10	1	+	7.936479961091632	7.353460314130278	ATGATCAAGGTACAATTA
chr12	101615827	101615828	chr12:101615828:T:G	rs10860755	T	G	T	Msx3.mouse_homeodomain_1	4	1	+	8.608243237558074	2.9502539856083785	AAACTTATGAGGCAATTA
chr12	101783203	101783204	chr12:101783204:C:A	rs185427041	C	A	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr12	101855058	101855059	chr12:101855059:A:G	rs7138845	A	G	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr12	101886364	101886365	chr12:101886365:C:T	rs61935796	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr12	102167993	102167994	chr12:102167994:T:C	rs12426352	T	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr12	102483307	102483308	chr12:102483308:C:G	rs12579077	C	G	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr12	103100684	103100685	chr12:103100685:G:T	rs3914817	G	T	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr12	103326444	103326445	chr12:103326445:T:G	rs73387710	T	G	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr12	103936736	103936737	chr12:103936737:T:C	rs10861147	T	C	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr12	103936751	103936752	chr12:103936752:T:C	rs4964375	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	12.23636112088196	9.7942838939504	GCATTTAAAAGGCAATTA
chr12	103951344	103951345	chr12:103951345:A:G	rs15805	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr12	103962685	103962686	chr12:103962686:C:T	rs784084	C	T	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr12	104286882	104286883	chr12:104286883:G:T	rs10735393	G	T	T	Msx3.mouse_homeodomain_1	8	1	+	6.502591702195033	6.47187056188269	CAGCTTACGAGGCAATTA
chr12	104353950	104353951	chr12:104353951:G:A	rs557406860	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr12	104355024	104355025	chr12:104355025:C:A	rs17202520	C	A	A	Msx3.mouse_homeodomain_1	6	1	-	8.492645622682115	7.342440642501152	TCAATTGCACTGCAATCA
chr12	104355035	104355036	chr12:104355036:C:T	rs28672744	C	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr12	104505686	104505687	chr12:104505687:C:T	rs118191991	C	T	C	Msx3.mouse_homeodomain_1	3	1	+	7.348890107836488	5.101714132221296	TCACTTAGGGCCAAATTA
chr12	104568418	104568419	chr12:104568419:C:G	rs112687903	C	G	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr12	104568465	104568466	chr12:104568466:A:G	rs313318	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr12	105141556	105141557	chr12:105141557:T:C	rs1196807	T	C	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr12	105289205	105289206	chr12:105289206:T:A	chr12:105289206:T:A	T	A	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr12	105289205	105289206	chr12:105289206:T:G	rs11559871	T	G	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr12	105309881	105309882	chr12:105309882:T:C	rs56032632	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr12	105319421	105319422	chr12:105319422:C:T	rs1469663	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	8.302214642188872	10.359488821095066	CTAATTAATTTCTGCTTA
chr12	105319439	105319440	chr12:105319440:T:C	rs1469662	T	C	c	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr12	105736797	105736798	chr12:105736798:T:C	rs73399335	T	C	C	Msx3.mouse_homeodomain_1	17	1	-	8.377370029794747	5.809210432611544	CCAATTAGGTCGTTATTA
chr12	105956262	105956263	chr12:105956263:A:G	rs59302317	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr12	105987343	105987344	chr12:105987344:G:T	rs2436606	G	T	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr12	106029621	106029622	chr12:106029622:A:G	rs987454	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr12	106066222	106066223	chr12:106066223:G:A	rs10746054	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr12	106096889	106096890	chr12:106096890:A:G	rs11833852	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr12	106190521	106190522	chr12:106190522:C:T	rs7307235	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr12	106268463	106268464	chr12:106268464:T:C	rs1215808	T	C	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr12	106919067	106919068	chr12:106919068:G:C	rs1444583	G	C	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr12	107502034	107502035	chr12:107502035:T:C	rs11113353	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	8.496623365614115	6.054546138682559	CCAATTAAGTGAAAATTT
chr12	107538261	107538262	chr12:107538262:A:C	rs12423245	A	C	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr12	107738653	107738654	chr12:107738654:A:T	rs12227593	A	T	T	Msx3.mouse_homeodomain_1	9	1	+	9.116269567764334	8.702128295891253	GCAATAAATACCTAATTG
chr12	108013450	108013451	chr12:108013451:T:C	rs10861852	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr12	108067343	108067344	chr12:108067344:G:A	rs10746108	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr12	108067383	108067384	chr12:108067384:A:G	rs10746109	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr12	108178342	108178343	chr12:108178343:C:A	rs12228812	C	A	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr12	108272114	108272115	chr12:108272115:G:A	rs151328906	G	A	g	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr12	108306400	108306401	chr12:108306401:G:A	rs12301778	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr12	108433027	108433028	chr12:108433028:T:A	rs11113880	T	A	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr12	108442711	108442712	chr12:108442712:A:C	rs57181439	A	C	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr12	108497726	108497727	chr12:108497727:A:G	rs12368931	A	G	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	108562067	108562068	chr12:108562068:A:G	rs75704570	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.804993680588407	4.83556270421953	GCAATTGTCCTCGAATTA
chr12	108746229	108746230	chr12:108746230:G:A	rs4964745	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr12	109386188	109386189	chr12:109386189:G:C	rs76682741	G	C	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr12	109480775	109480776	chr12:109480776:A:G	rs73196264	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr12	109670673	109670674	chr12:109670674:C:T	rs12315841	C	T	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr12	109718710	109718711	chr12:109718711:C:G	chr12:109718711:C:G	C	G	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr12	109782658	109782659	chr12:109782659:G:A	rs4766631	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr12	110001240	110001241	chr12:110001241:A:C	rs112438783	A	C	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr12	110357402	110357403	chr12:110357403:A:T	rs73206859	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr12	110408035	110408036	chr12:110408036:T:G	rs1011260632	T	G	t	Msx3.mouse_homeodomain_1	17	1	-	9.66821358032228	5.081356999195771	CCCATTAAAACCTAATCA
chr12	110716629	110716630	chr12:110716630:A:G	rs7138780	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr12	111409314	111409315	chr12:111409315:C:T	rs975460230	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr12	111570005	111570006	chr12:111570006:A:G	rs77110671	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	9.37025431244534	4.78216009342219	GCACTTGAAATACGATTA
chr12	112022944	112022945	chr12:112022945:A:G	rs7114	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr12	112887654	112887655	chr12:112887655:T:C	rs7979186	T	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr12	113031335	113031336	chr12:113031336:T:C	rs1732783	T	C	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr12	113728485	113728486	chr12:113728486:C:T	rs575478	C	T	T	Msx3.mouse_homeodomain_1	6	1	-	7.350811184489374	9.792888411420932	GAGATCGATAAGCAATTA
chr12	113808259	113808260	chr12:113808260:G:C	rs7958390	G	C	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr12	114018847	114018848	chr12:114018848:T:C	rs116517384	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	7.024297026146477	5.914481488822882	TCCATCAAGGAGTGATTA
chr12	114196499	114196500	chr12:114196500:T:C	rs12307045	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr12	114406397	114406398	chr12:114406398:G:A	rs11067101	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr12	114718070	114718071	chr12:114718071:G:C	rs2384479	G	C	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr12	114853893	114853894	chr12:114853894:G:A	rs2433751	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.726412313171856	7.6179027580071095	GTAATTGTGGACTGATTA
chr12	114896271	114896272	chr12:114896272:C:T	rs11615334	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	7.666396674664775	8.672946007509985	CCCATTACGAAGTTATTA
chr12	115072863	115072864	chr12:115072864:C:T	rs16944947	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	6.0086755651135695	4.81172453993816	ACCATCAGGCAGCAATCA
chr12	115166876	115166877	chr12:115166877:T:C	rs35361	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	7.761211846720809	5.368226104210309	CCACTTACTAGCTAATTG
chr12	115166881	115166882	chr12:115166882:G:C	rs7298847	G	C	G	Msx3.mouse_homeodomain_1	10	1	+	7.761211846720809	7.30025919380845	CCACTTACTAGCTAATTG
chr12	115755074	115755075	chr12:115755075:A:G	rs10219441	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr12	115810210	115810211	chr12:115810211:T:C	rs11067789	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	7.960853072657952	5.903578893751756	GAAATTGCATTCCAATCA
chr12	115810242	115810243	chr12:115810243:C:T	rs6490040	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr12	115860807	115860808	chr12:115860808:C:T	rs2575286	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr12	116019998	116019999	chr12:116019999:T:G	rs11611238	T	G	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr12	116196364	116196365	chr12:116196365:G:C	rs4767387	G	C	A	Msx3.mouse_homeodomain_1	4	1	+	8.385296104764922	7.944739676845487	ATAAGTAAGGTGCAATTA
chr12	116280931	116280932	chr12:116280932:C:G	rs2392972	C	G	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	116508601	116508602	chr12:116508602:A:G	rs147761926	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr12	116976152	116976153	chr12:116976153:C:T	rs7298447	C	T	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr12	117151450	117151451	chr12:117151451:C:T	rs2221165	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr12	117427255	117427256	chr12:117427256:A:G	rs10850824	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr12	117705700	117705701	chr12:117705701:T:C	rs17439358	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr12	117738516	117738517	chr12:117738517:G:C	rs4767605	G	C	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr12	118404744	118404745	chr12:118404745:C:A	rs17441047	C	A	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr12	118465850	118465851	chr12:118465851:C:T	rs55915865	C	T	C	Msx3.mouse_homeodomain_1	13	1	+	9.584194706669404	8.285979300306813	ACAATTACTAGCTCATTA
chr12	118685890	118685891	chr12:118685891:G:A	rs1402339	G	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr12	118742860	118742861	chr12:118742861:G:A	rs7302736	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr12	118908819	118908820	chr12:118908820:C:G	rs953784	C	G	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr12	119235377	119235378	chr12:119235378:C:T	rs11064722	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	7.438607409340003	7.768548362056103	GCAATTACGTTGCATTTT
chr12	119296068	119296069	chr12:119296069:G:A	rs2727733	G	A	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	119589259	119589260	chr12:119589260:G:A	rs16949417	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr12	119796423	119796424	chr12:119796424:T:C	rs11609520	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	6.374238829651452	1.7861446106283005	CCCATCAGTTGCCAATTT
chr12	119805040	119805041	chr12:119805041:A:G	rs10774514	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.438840628178439	3.4694096518095625	CCAATCTGGTTTCAATTA
chr12	119990663	119990664	chr12:119990664:C:T	rs6490278	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	7.149193078070572	6.301350207189889	GCAGTTAATCTCTAATCA
chr12	120182346	120182347	chr12:120182347:T:C	rs61063054	T	C	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr12	120398545	120398546	chr12:120398546:T:A	rs206970	T	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr12	120555112	120555113	chr12:120555113:C:T	chr12:120555113:C:T	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr12	120693926	120693927	chr12:120693927:T:C	chr12:120693927:T:C	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr12	121099879	121099880	chr12:121099880:G:A	rs2263271	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr12	121197393	121197394	chr12:121197394:C:T	rs10849853	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	9.152888325714361	9.035184677189367	CCTCTTAGCGACCAATTA
chr12	121321268	121321269	chr12:121321269:T:A	rs192602215	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	10.513413780262807	6.921131573150287	GTAATTAAAAAAAAATTT
chr12	121331453	121331454	chr12:121331454:C:T	rs78999191	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.919346745490807	6.209116326507098	AACATTAATATCCCATTA
chr12	121950460	121950461	chr12:121950461:T:C	rs79877966	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	10.071378624007103	7.554509996070023	CCACTTAACATAAAATTA
chr12	122329322	122329323	chr12:122329323:C:T	rs4758665	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr12	122842351	122842352	chr12:122842352:T:G	rs117566398	T	G	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr12	123032797	123032798	chr12:123032798:C:T	rs74654764	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr12	123032839	123032840	chr12:123032840:T:C	chr12:123032840:T:C	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr12	124194867	124194868	chr12:124194868:C:G	rs11057501	C	G	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr12	124232919	124232920	chr12:124232920:G:A	rs79278833	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	7.608972161747745	6.83613198500585	GGCATTAAAGACTCATTA
chr12	124505013	124505014	chr12:124505014:C:T	rs11057642	C	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr12	124537224	124537225	chr12:124537225:C:T	rs11057664	C	T	C	Msx3.mouse_homeodomain_1	9	1	-	8.688915737696664	9.62945973008281	CAGATTAGCGAACAATTA
chr12	124632528	124632529	chr12:124632529:A:C	rs275766	A	C	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr12	124802669	124802670	chr12:124802670:A:C	rs989892	A	C	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr12	124998620	124998621	chr12:124998621:G:C	rs4765014	G	C	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr12	125032318	125032319	chr12:125032319:G:A	rs11058004	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr12	125095133	125095134	chr12:125095134:A:G	rs1384556	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr12	125105870	125105871	chr12:125105871:T:C	rs7970937	T	C	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr12	125105887	125105888	chr12:125105888:A:T	rs73423520	A	T	A	Msx3.mouse_homeodomain_1	10	1	-	7.694006879657084	8.187578403632205	CCTATAAGAATCCCATTA
chr12	125228819	125228820	chr12:125228820:G:C	rs75171700	G	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr12	125228862	125228863	chr12:125228863:T:C	rs11058083	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr12	126452005	126452006	chr12:126452006:C:T	rs4765384	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr12	126484746	126484747	chr12:126484747:C:T	rs10773285	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	7.982087867237742	9.026060167111456	GTAATTTACACGCACTTA
chr12	126782277	126782278	chr12:126782278:T:A	rs1533165	T	A	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr12	127086822	127086823	chr12:127086823:A:G	rs11058981	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr12	127629288	127629289	chr12:127629289:C:T	rs4760995	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	10.64083647871745	9.81724573445727	CTAATTGAGATATAATTA
chr12	127927567	127927568	chr12:127927568:C:T	rs1532058	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr12	127941817	127941818	chr12:127941818:T:C	rs1386848	T	C	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr12	128261209	128261210	chr12:128261210:A:G	rs1193373	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	8.304089750982236	7.2274985800457605	TGCATTAAATAGCCATTA
chr12	128605995	128605996	chr12:128605996:G:A	rs113018682	G	A	g	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr12	128868060	128868061	chr12:128868061:G:A	rs34139278	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	6.634627980826173	5.189505317259691	GCCATTACATTCCCTTTA
chr12	129231313	129231314	chr12:129231314:T:G	rs2306515	T	G	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr12	129610834	129610835	chr12:129610835:G:A	rs7973346	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr12	129906299	129906300	chr12:129906300:G:A	rs12581136	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr12	130235898	130235899	chr12:130235899:T:C	rs34875425	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	7.783427169742663	5.215267572559461	CCAACCACAATCCAATTA
chr12	130836628	130836629	chr12:130836629:C:G	rs10773826	C	G	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr12	131326615	131326616	chr12:131326616:G:A	rs10773879	G	A	g	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr12	131326618	131326619	chr12:131326619:C:T	rs111966475	C	T	c	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr12	131351735	131351736	chr12:131351736:A:G	rs10848359	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr12	131400189	131400190	chr12:131400190:C:T	rs7134122	C	T	c	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr12	131400196	131400197	chr12:131400197:A:C	rs7304781	A	C	a	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr12	131459584	131459585	chr12:131459585:G:T	rs7138582	G	T	g	Msx3.mouse_homeodomain_1	5	1	+	10.950517111793012	15.393098889260177	ACAATGAAAATGTAATTA
chr12	131555331	131555332	chr12:131555332:A:C	rs7977258	A	C	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr12	131555355	131555356	chr12:131555356:A:G	rs11247051	A	G	a	Msx3.mouse_homeodomain_1	14	1	+	8.266604462511754	3.6785102434886037	CCCATCTGATACCAATTA
chr12	131720562	131720563	chr12:131720563:A:G	rs7306271	A	G	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr12	132243826	132243827	chr12:132243827:C:A	rs76080820	C	A	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr12	132389493	132389494	chr12:132389494:G:A	rs71452511	G	A	g	Msx3.mouse_homeodomain_1	0	1	-	6.373443343442312	5.549852599182134	CGCGTTAAGAGGCAATTA
chr13	19109831	19109832	chr13:19109832:G:A	rs8000614	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	8.320917714899736	9.327467047744944	CCAGTTAAGTGCCAATTT
chr13	19862457	19862458	chr13:19862458:T:G	rs3783037	T	G	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr13	19914071	19914072	chr13:19914072:A:G	rs1413477	A	G	G	Msx3.mouse_homeodomain_1	0	1	+	9.5019229667979	10.610432521962645	ATAATTATGTACCAATTC
chr13	19960067	19960068	chr13:19960068:G:A	rs1301365552	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr13	20136352	20136353	chr13:20136353:A:T	rs9552087	A	T	t	Msx3.mouse_homeodomain_1	0	1	-	9.93309842009883	10.015531119068878	TAAATTAAATTAAAATTA
chr13	21181703	21181704	chr13:21181704:T:A	rs7326213	T	A	.	Msx3.mouse_homeodomain_1	1	1	+	10.66489916614541	8.81245266008563	TTAATTAATAAATGATTA
chr13	21297627	21297628	chr13:21297628:C:G	rs372350357	C	G	.	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr13	21348655	21348656	chr13:21348656:T:C	rs9580088	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr13	21436163	21436164	chr13:21436164:A:T	rs936963820	A	T	A	Msx3.mouse_homeodomain_1	11	1	-	10.254444422839754	10.682258275937794	GTAATTAATATTCTATTA
chr13	21583845	21583846	chr13:21583846:A:C	rs73445729	A	C	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr13	21672649	21672650	chr13:21672650:G:T	rs9580186	G	T	G	Msx3.mouse_homeodomain_1	17	1	-	8.245478663999036	12.832335245125545	GCACTTAATATACAATTC
chr13	21740194	21740195	chr13:21740195:A:G	rs139269812	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.503645923445049	1.5961806865210442	GCCATTATGATCAAATTG
chr13	22289132	22289133	chr13:22289133:A:T	rs7336555	A	T	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr13	22289144	22289145	chr13:22289145:C:T	rs7335846	C	T	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr13	22426722	22426723	chr13:22426723:T:C	rs77673898	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr13	22801741	22801742	chr13:22801742:T:C	rs2026201	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr13	22891982	22891983	chr13:22891983:A:C	rs7318592	A	C	C	Msx3.mouse_homeodomain_1	5	1	-	7.77131362674628	3.3287318492791127	GCCATTAAATACCCATGA
chr13	23994054	23994055	chr13:23994055:C:T	rs55953024	C	T	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr13	24036173	24036174	chr13:24036174:T:C	rs56331495	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	9.507861570919456	6.3829124173256035	ACAATAAAAATTCCATTA
chr13	24177865	24177866	chr13:24177866:A:T	rs9511111	A	T	A	Msx3.mouse_homeodomain_1	16	1	-	9.77783475602117	5.892996828498111	CCAATTAAAAAAAAATTC
chr13	24241041	24241042	chr13:24241042:G:A	rs4769338	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr13	25432170	25432171	chr13:25432171:A:G	rs551481	A	G	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr13	25585455	25585456	chr13:25585456:A:G	rs9581401	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.294621557298896	5.325190580930017	GTAATTAAGTTGGCATTA
chr13	25744555	25744556	chr13:25744556:T:C	rs17686158	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr13	26045408	26045409	chr13:26045409:A:G	rs12100154	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr13	26401802	26401803	chr13:26401803:C:T	chr13:26401803:C:T	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr13	26901969	26901970	chr13:26901970:C:T	rs9579051	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.433266327395575	6.988143663829095	GAAATTCAAATGCAATTG
chr13	27350165	27350166	chr13:27350166:T:C	rs17524459	T	C	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr13	27677152	27677153	chr13:27677153:C:T	rs9554095	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	7.882868951368768	7.035026080488083	GCCATTGTATTACAATTG
chr13	28102697	28102698	chr13:28102698:G:A	rs7324609	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	7.9949052165547085	8.935449208940852	CTATTTAAAGCTCAATTA
chr13	28129055	28129056	chr13:28129056:T:C	rs113504836	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr13	28585115	28585116	chr13:28585116:T:G	rs17086834	T	G	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr13	29096345	29096346	chr13:29096346:C:T	rs9506102	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	11.148877911464066	9.951926886288657	GCAATCAGTCAGTAATTA
chr13	29103413	29103414	chr13:29103414:C:A	rs9506105	C	A	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr13	29565087	29565088	chr13:29565088:T:C	rs9579406	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	10.90144570140695	8.38457707346987	TTAATTAAGAGCTGATTA
chr13	29607607	29607608	chr13:29607608:C:T	rs75688034	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr13	29675578	29675579	chr13:29675579:C:T	rs111915000	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr13	29761987	29761988	chr13:29761988:G:A	rs6490427	G	A	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr13	30447830	30447831	chr13:30447831:T:C	rs74046027	T	C	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr13	30705808	30705809	chr13:30705809:C:T	rs12853584	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	7.290355119515152	8.366946290451626	GCCATAAGCTGCAAATTA
chr13	31225841	31225842	chr13:31225842:C:G	rs7994079	C	G	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr13	31330556	31330557	chr13:31330557:A:G	rs2025729	A	G	G	Msx3.mouse_homeodomain_1	16	1	-	8.265470338371863	5.140521184778008	GTCATTAAGTAACATTTA
chr13	31505140	31505141	chr13:31505141:G:A	rs646251	G	A	g	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr13	31639621	31639622	chr13:31639622:G:A	chr13:31639622:G:A	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr13	32026917	32026918	chr13:32026918:A:G	rs75621697	A	G	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr13	32539417	32539418	chr13:32539418:T:C	rs1886316	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr13	33072390	33072391	chr13:33072391:G:T	rs111755518	G	T	G	Msx3.mouse_homeodomain_1	6	1	-	9.6594688384743	13.90448464494646	GCAATTCTATTGCAATTG
chr13	33229906	33229907	chr13:33229907:G:A	rs117946904	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr13	33250074	33250075	chr13:33250075:A:C	rs9536879	A	C	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr13	33410268	33410269	chr13:33410269:G:A	rs17079082	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr13	33561681	33561682	chr13:33561682:A:G	rs9569784	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	8.431968748478209	1.5245035115542032	ACCTTTACAAAGCAATTA
chr13	33745375	33745376	chr13:33745376:T:A	rs17079699	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	11.134261024796267	7.541978817683748	CTCATTAAAAAAAAATTA
chr13	33755638	33755639	chr13:33755639:A:G	rs12430745	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr13	33784108	33784109	chr13:33784109:T:A	rs2147667	T	A	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr13	33784110	33784111	chr13:33784111:T:C	rs2147666	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr13	34024731	34024732	chr13:34024732:A:G	rs1980899	A	G	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr13	34265428	34265429	chr13:34265429:C:T	rs6562394	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr13	34621064	34621065	chr13:34621065:A:T	rs34886747	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	12.229840035894327	7.90307968454477	CCTATTAAATGACAATTA
chr13	34731112	34731113	chr13:34731113:T:C	rs558450782	T	C	t	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr13	35593846	35593847	chr13:35593847:T:G	rs78374323	T	G	T	Msx3.mouse_homeodomain_1	5	1	+	9.822505058540031	5.379923281072867	GCAATTAATAAAGCATTA
chr13	35593853	35593854	chr13:35593854:G:A	rs12866628	G	A	G	Msx3.mouse_homeodomain_1	12	1	+	9.822505058540031	10.810579317387361	GCAATTAATAAAGCATTA
chr13	35740489	35740490	chr13:35740490:C:T	rs12429464	C	T	c	Msx3.mouse_homeodomain_1	0	1	+	9.89970811833141	9.07611737407123	CTAATTATAATGTATTTA
chr13	35740525	35740526	chr13:35740526:A:G	rs35652644	A	G	g	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr13	35820798	35820799	chr13:35820799:G:A	rs117552022	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr13	35953549	35953550	chr13:35953550:T:A	rs117678316	T	A	T	Msx3.mouse_homeodomain_1	4	1	+	8.710177595836395	1.805156050100313	TCCATTAACTTGTCATTA
chr13	36117831	36117832	chr13:36117832:A:G	rs9546423	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr13	36117845	36117846	chr13:36117846:A:G	rs9546424	A	G	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr13	36282775	36282776	chr13:36282776:C:A	rs9547074	C	A	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr13	36356125	36356126	chr13:36356126:C:A	rs9547431	C	A	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr13	36498785	36498786	chr13:36498786:A:T	rs9547587	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	8.177119853869357	2.0982064345115004	CTCATTAATCAACAATCA
chr13	37384765	37384766	chr13:37384766:G:A	rs9547831	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr13	37486109	37486110	chr13:37486110:T:G	rs9576280	T	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr13	37490355	37490356	chr13:37490356:A:G	rs9576281	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	7.830074333111194	4.705125179517341	TCCATTAAACCTCAATTG
chr13	37566741	37566742	chr13:37566742:A:T	rs9547958	A	T	A	Msx3.mouse_homeodomain_1	4	1	-	7.841995497329278	0.9369739515931963	GCAATTAAAGGAGAATAA
chr13	37652723	37652724	chr13:37652724:C:G	rs9532093	C	G	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr13	39035551	39035552	chr13:39035552:A:C	rs17059035	A	C	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr13	39186225	39186226	chr13:39186226:A:G	rs547408222	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr13	39217752	39217753	chr13:39217753:C:T	rs1333449	C	T	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr13	39465086	39465087	chr13:39465087:C:G	rs7996782	C	G	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr13	39516585	39516586	chr13:39516586:G:A	rs34001793	G	A	G	Msx3.mouse_homeodomain_1	16	1	-	8.551743580571422	11.676692734165275	GTAATTAACATCCAGTCA
chr13	39516604	39516605	chr13:39516605:G:C	rs1927208	G	C	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr13	39787296	39787297	chr13:39787297:T:A	rs781147418	T	A	T	Msx3.mouse_homeodomain_1	2	1	-	8.22120740265623	5.065779784443611	ACACTTTCCTACCAATTA
chr13	39887653	39887654	chr13:39887654:T:A	rs2324459	T	A	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr13	40550528	40550529	chr13:40550529:T:C	rs190258437	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr13	41036210	41036211	chr13:41036211:C:T	rs61962750	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr13	41264366	41264367	chr13:41264367:C:A	rs3764054	C	A	A	Msx3.mouse_homeodomain_1	1	1	+	9.30113905020687	6.600849673266407	CCAGTTAATAAACAATTG
chr13	41268880	41268881	chr13:41268881:C:G	chr13:41268881:C:G	C	G	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr13	41488535	41488536	chr13:41488536:T:C	rs1952419	T	C	.	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr13	41608599	41608600	chr13:41608600:A:C	rs61963027	A	C	A	Msx3.mouse_homeodomain_1	2	1	+	9.200408193701264	6.817820752230538	ATAATTTTGAATCAATTA
chr13	43077252	43077253	chr13:43077253:T:G	rs9594878	T	G	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr13	43245870	43245871	chr13:43245871:A:G	rs7338937	A	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr13	43422486	43422487	chr13:43422487:A:T	rs9567187	A	T	A	Msx3.mouse_homeodomain_1	1	1	-	10.010215085057787	8.157768578998006	GTAATCACAAACCAATAA
chr13	43422504	43422505	chr13:43422505:C:T	rs75919617	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr13	43629904	43629905	chr13:43629905:A:C	rs144772065	A	C	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr13	44051798	44051799	chr13:44051799:C:T	rs9567348	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr13	44051820	44051821	chr13:44051821:A:G	rs140146726	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.041587118427758	4.072156142058878	GTCATTAGATGACAATTT
chr13	44147430	44147431	chr13:44147431:C:G	rs56001904	C	G	C	Msx3.mouse_homeodomain_1	13	1	+	11.788803382324318	12.615722259895495	GTAATTATTTTCCCATTA
chr13	44323596	44323597	chr13:44323597:T:G	rs1536947	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	10.50033361729376	3.592868380369754	CCAATTAAAATAAAATTT
chr13	44427867	44427868	chr13:44427868:C:T	rs9567432	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.532644819307824	5.8224144003241145	GCAATAAACCTCCCATTG
chr13	44922356	44922357	chr13:44922357:A:G	rs79069453	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr13	45342250	45342251	chr13:45342251:G:T	rs993648557	G	T	.	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr13	45490208	45490209	chr13:45490209:G:A	rs146737494	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	8.553459703815399	8.883400656531496	CCAATTACATTCCTATCA
chr13	45662211	45662212	chr13:45662212:C:T	rs539973738	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr13	45695299	45695300	chr13:45695300:G:T	rs74073443	G	T	T	Msx3.mouse_homeodomain_1	1	1	-	9.329708704765379	6.6294193278249125	CCCATTAAATACTAATTC
chr13	45980713	45980714	chr13:45980714:A:G	rs1571052	A	G	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr13	45980718	45980719	chr13:45980719:G:A	rs1571053	G	A	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr13	46007726	46007727	chr13:46007727:T:C	rs2404728	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr13	46595666	46595667	chr13:46595667:T:A	rs117128304	T	A	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr13	46599215	46599216	chr13:46599216:C:T	rs111722649	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr13	46604988	46604989	chr13:46604989:C:T	rs75117259	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr13	46633392	46633393	chr13:46633393:C:T	rs74077043	C	T	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr13	46684497	46684498	chr13:46684498:A:C	rs143220901	A	C	a	Msx3.mouse_homeodomain_1	4	1	-	7.131824817994672	1.4738355660449742	GCAATTCTTTGCCACTTA
chr13	46684499	46684500	chr13:46684500:T:C	rs7988743	T	C	t	Msx3.mouse_homeodomain_1	2	1	-	7.131824817994672	4.614956190057595	GCAATTCTTTGCCACTTA
chr13	47237972	47237973	chr13:47237973:A:G	rs145738898	A	G	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr13	48334750	48334751	chr13:48334751:A:G	rs114584560	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr13	48334804	48334805	chr13:48334805:G:C	rs117742879	G	C	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr13	48534576	48534577	chr13:48534577:C:T	rs74074916	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	9.806480490274083	8.3613578267076	ACAATTAGCTAACAATAA
chr13	48797601	48797602	chr13:48797602:G:A	rs35005722	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	6.873045279665445	5.676094254490034	CCAATCACTCAGCAATGA
chr13	48829187	48829188	chr13:48829188:C:T	rs34010588	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr13	49607364	49607365	chr13:49607365:G:A	rs180927352	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr13	49620257	49620258	chr13:49620258:G:A	rs9535274	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr13	49682115	49682116	chr13:49682116:C:T	rs61959933	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr13	49996054	49996055	chr13:49996055:T:C	rs9596220	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr13	50082967	50082968	chr13:50082968:A:G	rs55682878	A	G	A	Msx3.mouse_homeodomain_1	0	1	-	7.967936714351411	8.79152745861159	TCACTTATCACGCCATTA
chr13	50324152	50324153	chr13:50324153:T:C	rs1269272	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	8.806419330059853	7.762447030186137	TTCATTAACATCCAATAA
chr13	50428389	50428390	chr13:50428390:C:A	rs7983762	C	A	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr13	50510904	50510905	chr13:50510905:G:A	rs9562985	G	A	G	Msx3.mouse_homeodomain_1	9	1	-	7.233074476255488	8.12516350832674	ACCATTAAGCGGCATTTA
chr13	50708285	50708286	chr13:50708286:C:G	rs797509	C	G	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr13	50748051	50748052	chr13:50748052:G:A	rs675305	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr13	50801834	50801835	chr13:50801835:A:G	rs9591364	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	11.254768413118029	10.362679381046778	GCAATTGAATAGTCATTA
chr13	50801847	50801848	chr13:50801848:T:C	rs73186332	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr13	50816109	50816110	chr13:50816110:C:T	rs9535497	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr13	50868044	50868045	chr13:50868045:A:G	rs665354	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr13	51960020	51960021	chr13:51960021:G:T	rs78021873	G	T	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr13	52109786	52109787	chr13:52109787:T:C	rs2897965	T	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr13	52371268	52371269	chr13:52371269:T:C	rs116884784	T	C	T	Msx3.mouse_homeodomain_1	11	1	-	9.833009290371415	11.029960315546827	CTACTAAAAATACAATTA
chr13	52371283	52371284	chr13:52371284:C:T	rs147304806	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr13	52609455	52609456	chr13:52609456:C:T	rs74087355	C	T	c	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr13	52749566	52749567	chr13:52749567:G:T	chr13:52749567:G:T	G	T	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr13	53004202	53004203	chr13:53004203:T:G	rs146973017	T	G	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr13	53171214	53171215	chr13:53171215:T:C	rs1322962	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr13	54012608	54012609	chr13:54012609:T:G	rs7987690	T	G	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr13	54185897	54185898	chr13:54185898:T:G	rs1537643	T	G	T	Msx3.mouse_homeodomain_1	12	1	-	9.239854293355743	11.751163053124568	GAAATTAAGTAGAAATTG
chr13	55055899	55055900	chr13:55055900:T:A	rs7320070	T	A	T	Msx3.mouse_homeodomain_1	9	1	-	10.162871632135351	9.74873036026227	CCAATTGTTAAGCAATTT
chr13	55055922	55055923	chr13:55055923:G:A	rs7319059	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr13	55782818	55782819	chr13:55782819:G:C	rs73203343	G	C	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr13	56000556	56000557	chr13:56000557:C:T	rs8000831	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr13	57274463	57274464	chr13:57274464:A:G	rs9569654	A	G	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr13	58703876	58703877	chr13:58703877:T:C	rs9569939	T	C	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr13	58850401	58850402	chr13:58850402:C:A	rs6561989	C	A	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr13	59127697	59127698	chr13:59127698:C:T	rs74084015	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr13	59229848	59229849	chr13:59229849:A:G	rs1327948	A	G	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr13	59345882	59345883	chr13:59345883:A:T	rs9597991	A	T	a	Msx3.mouse_homeodomain_1	15	1	-	9.06947109945172	2.9905576800938625	CTAATTAAAAGAAAATTT
chr13	59504407	59504408	chr13:59504408:A:T	rs1489747	A	T	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr13	59771399	59771400	chr13:59771400:T:G	rs451879	T	G	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr13	60260535	60260536	chr13:60260536:G:A	rs9538621	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr13	60332282	60332283	chr13:60332283:G:A	rs9592043	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr13	60351284	60351285	chr13:60351285:T:C	rs9538656	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	12.871164191030072	10.429086964098516	GCAATTACATAACAATTG
chr13	60759575	60759576	chr13:60759576:G:A	rs138252480	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr13	60820832	60820833	chr13:60820833:C:A	rs9538944	C	A	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr13	61044718	61044719	chr13:61044719:C:T	rs9570428	C	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr13	61252192	61252193	chr13:61252193:T:G	rs7332673	T	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr13	61261626	61261627	chr13:61261627:T:G	rs9805473	T	G	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr13	61289126	61289127	chr13:61289127:G:A	rs9539091	G	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr13	61961936	61961937	chr13:61961937:G:A	rs28970808	G	A	a	Msx3.mouse_homeodomain_1	8	1	+	8.918475745430424	9.925025078275631	GTAATTATGTATAGATTA
chr13	62371862	62371863	chr13:62371863:G:T	rs4884417	G	T	T	Msx3.mouse_homeodomain_1	10	1	-	9.701911331692983	11.239455155541815	ATAATTAAAACCTAATAA
chr13	62798774	62798775	chr13:62798775:C:T	rs9570737	C	T	-	Msx3.mouse_homeodomain_1	10	1	+	9.532179476953324	10.57615177682704	TAAATTGATACGCAATTA
chr13	63438303	63438304	chr13:63438304:C:T	rs643438	C	T	t	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr13	64183852	64183853	chr13:64183853:A:G	rs9317395	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr13	64202797	64202798	chr13:64202798:G:A	rs9317401	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr13	65508489	65508490	chr13:65508490:A:G	rs11617805	A	G	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr13	65531033	65531034	chr13:65531034:T:C	rs9540466	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr13	65656859	65656860	chr13:65656860:T:C	rs75117250	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr13	65656881	65656882	chr13:65656882:C:T	rs114225675	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	8.798021819619338	9.907837356942933	ACAATTGGATAACAATTT
chr13	65856905	65856906	chr13:65856906:A:G	rs73502540	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.74549600018197	4.15740178115882	ATAATAAAGATCTGATTA
chr13	66105862	66105863	chr13:66105863:A:G	rs17080730	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr13	66513868	66513869	chr13:66513869:T:C	rs76165680	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr13	66546846	66546847	chr13:66546847:G:C	rs9540803	G	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr13	67049059	67049060	chr13:67049060:A:C	rs9529176	A	C	A	Msx3.mouse_homeodomain_1	2	1	+	9.092059357811895	6.709471916341172	CTAATAAGAATAAAATTA
chr13	67314607	67314608	chr13:67314608:G:A	rs1413467	G	A	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr13	67356087	67356088	chr13:67356088:G:T	rs1572188	G	T	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr13	68892681	68892682	chr13:68892682:C:T	rs2492554	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr13	69603418	69603419	chr13:69603419:G:T	rs9572198	G	T	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr13	70364689	70364690	chr13:70364690:T:G	rs8002715	T	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr13	70364702	70364703	chr13:70364703:G:A	rs8001690	G	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr13	70534744	70534745	chr13:70534745:A:G	rs9542369	A	G	G	Msx3.mouse_homeodomain_1	8	1	+	8.434897348610512	7.428348015765304	GGAATTGAATAGCAATAA
chr13	70662254	70662255	chr13:70662255:G:A	rs77713962	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr13	71091626	71091627	chr13:71091627:G:A	rs2209574	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	10.207690578100024	9.010739552924612	CTAATTACAAAGTTATTA
chr13	71220358	71220359	chr13:71220359:T:C	rs17088000	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	11.798180193798814	4.89071495687481	CCGATTAAGCAGTAATTA
chr13	71464732	71464733	chr13:71464733:G:C	rs138740949	G	C	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr13	71464947	71464948	chr13:71464948:G:A	rs9652235	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr13	71712842	71712843	chr13:71712843:T:C	rs9572769	T	C	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr13	72474614	72474615	chr13:72474615:G:A	rs55973008	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.202425071937897	8.093915516773153	GCAATCAATCACCAATTC
chr13	73071688	73071689	chr13:73071689:G:A	rs79967159	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr13	73284424	73284425	chr13:73284425:A:G	rs9634724	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	8.986890448286083	6.4700218203490065	GTACTTAAAGGAAAATTA
chr13	73284430	73284431	chr13:73284431:A:G	rs6562756	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	8.986890448286083	7.9803411154408765	GTACTTAAAGGAAAATTA
chr13	73634124	73634125	chr13:73634125:C:T	chr13:73634125:C:T	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	8.080792896288315	6.972283341123572	GCAATTAACTTTCAACTA
chr13	73634127	73634128	chr13:73634128:G:A	chr13:73634128:G:A	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr13	75129323	75129324	chr13:75129324:T:G	rs7985837	T	G	G	Msx3.mouse_homeodomain_1	4	1	+	9.39377217192883	3.7357829199791324	GCGATAAAAAAAAAATTA
chr13	75186254	75186255	chr13:75186255:T:C	rs9318325	T	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr13	75199270	75199271	chr13:75199271:T:G	rs17063940	T	G	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr13	75761451	75761452	chr13:75761452:G:A	rs79936128	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr13	75798701	75798702	chr13:75798702:T:G	rs35843177	T	G	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr13	75882441	75882442	chr13:75882442:A:G	rs7986876	A	G	G	Msx3.mouse_homeodomain_1	13	1	+	9.893419036867261	7.836144857961064	CTAATTATTTTGCATTTA
chr13	75984838	75984839	chr13:75984839:C:T	rs1461983	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr13	76239131	76239132	chr13:76239132:T:C	rs1929751	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	12.397729908043221	8.428298931674345	CCAATCACTGACCAATTA
chr13	76307841	76307842	chr13:76307842:T:A	rs7318915	T	A	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr13	76668212	76668213	chr13:76668213:G:C	rs9544348	G	C	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr13	76816273	76816274	chr13:76816274:G:A	rs1342883	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr13	76823215	76823216	chr13:76823216:T:G	rs113511314	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	9.726541249598196	7.343953808127471	AAAATTATCTAGAAATTA
chr13	76854631	76854632	chr13:76854632:C:A	rs77984984	C	A	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr13	76882871	76882872	chr13:76882872:C:T	rs1053397	C	T	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr13	77399337	77399338	chr13:77399338:C:T	rs1927407	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr13	77399365	77399366	chr13:77399366:A:G	rs9530646	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	9.690644590335115	8.798555558263864	TTACTTGTATACCAATTA
chr13	77507156	77507157	chr13:77507157:A:G	rs9544524	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr13	77606635	77606636	chr13:77606636:C:T	rs2274015	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	9.28781374598579	10.294363078830997	CAAATAATGAAACAATTA
chr13	77980500	77980501	chr13:77980501:G:A	rs1330907	G	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr13	77982078	77982079	chr13:77982079:G:T	rs17071323	G	T	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr13	78228266	78228267	chr13:78228267:A:G	rs12869136	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr13	78403318	78403319	chr13:78403319:C:T	rs4885537	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.931883658219412	7.486760994652932	ACAATAAGATTGCACTTA
chr13	78410919	78410920	chr13:78410920:C:T	rs10507885	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	7.815828666811691	6.707319111646947	GCAATTCTACAGTAATTG
chr13	78771773	78771774	chr13:78771774:G:A	rs12868713	G	A	g	Msx3.mouse_homeodomain_1	8	1	-	9.83136894339335	9.713665294868353	GTGATCAACGGCCAATTA
chr13	79803056	79803057	chr13:79803057:C:A	rs56229124	C	A	C	Msx3.mouse_homeodomain_1	13	1	+	8.154011404486418	11.038204460963794	TTAATTACATGCCCATTG
chr13	80563131	80563132	chr13:80563132:T:C	rs1539715	T	C	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr13	81392924	81392925	chr13:81392925:T:C	rs112392811	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr13	81392963	81392964	chr13:81392964:G:T	rs74391365	G	T	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr13	81553735	81553736	chr13:81553736:C:T	rs7334646	C	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr13	82770943	82770944	chr13:82770944:G:A	rs2147635	G	A	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr13	83071150	83071151	chr13:83071151:T:C	rs78965639	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr13	84377093	84377094	chr13:84377094:C:T	rs17369482	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr13	84640783	84640784	chr13:84640784:G:T	rs79178811	G	T	G	Msx3.mouse_homeodomain_1	11	1	-	8.616837920202887	7.334421354317214	AGAATCATGAGCCAATTA
chr13	84844891	84844892	chr13:84844892:C:T	rs1358045	C	T	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr13	84917537	84917538	chr13:84917538:T:C	rs58976422	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr13	85828268	85828269	chr13:85828269:G:A	rs534252211	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr13	87671804	87671805	chr13:87671805:G:C	rs1367169119	G	C	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr13	88361508	88361509	chr13:88361509:A:G	rs2783202	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr13	88384741	88384742	chr13:88384742:A:T	rs9514699	A	T	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr13	89279569	89279570	chr13:89279570:T:G	rs141787822	T	G	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr13	89513920	89513921	chr13:89513921:T:C	rs149296598	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr13	89862820	89862821	chr13:89862821:T:G	rs9515644	T	G	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr13	90847405	90847406	chr13:90847406:A:G	rs111331058	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	11.664877441626835	10.55506190430324	ACAATTAATATTAAATTA
chr13	91014344	91014345	chr13:91014345:T:C	rs9523234	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr13	91041974	91041975	chr13:91041975:T:G	rs76386927	T	G	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr13	91083237	91083238	chr13:91083238:T:A	rs16945136	T	A	T	Msx3.mouse_homeodomain_1	10	1	+	8.67329977254818	9.1668712965233	ACAATTATTGTTTGATTA
chr13	91776886	91776887	chr13:91776887:T:G	rs9560854	T	G	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr13	91812487	91812488	chr13:91812488:G:A	rs1827755	G	A	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr13	92028505	92028506	chr13:92028506:G:T	rs77223234	G	T	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr13	93786593	93786594	chr13:93786594:A:C	rs980431	A	C	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr13	93807221	93807222	chr13:93807222:T:C	rs9516294	T	C	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr13	93847305	93847306	chr13:93847306:A:G	rs11839253	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr13	93847348	93847349	chr13:93847349:T:C	rs9524255	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr13	93881291	93881292	chr13:93881292:G:A	rs61964366	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr13	94182491	94182492	chr13:94182492:G:A	rs17791763	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr13	94419529	94419530	chr13:94419530:A:G	rs117292251	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	8.845637295423566	2.747091615554434	GCAATAAGAAGGCAATTC
chr13	94829397	94829398	chr13:94829398:T:A	rs35096200	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	15.229176994298747	11.858390798419949	CCAATTAAACCGCAATTA
chr13	95747583	95747584	chr13:95747584:G:C	rs2389372	G	C	G	Msx3.mouse_homeodomain_1	12	1	-	6.651781599141492	3.1523985805253347	GCCATAAAGAGCCAATTC
chr13	97028961	97028962	chr13:97028962:A:C	chr13:97028962:A:C	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	8.573556492812983	4.328540686340821	GGAATTACCATCCAATAA
chr13	97028975	97028976	chr13:97028976:C:T	rs12855847	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr13	97043331	97043332	chr13:97043332:G:A	rs77592535	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr13	97384705	97384706	chr13:97384706:A:C	rs4771272	A	C	C	Msx3.mouse_homeodomain_1	3	1	+	8.077219088116307	5.1970447235834065	CCAATTAATTGCCTATTT
chr13	97853518	97853519	chr13:97853519:T:C	rs9517094	T	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr13	98336754	98336755	chr13:98336755:T:C	rs58334487	T	C	t	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr13	98506669	98506670	chr13:98506670:C:T	rs9513433	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr13	98592241	98592242	chr13:98592242:G:T	rs60992538	G	T	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr13	98657956	98657957	chr13:98657957:A:G	rs11069323	A	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr13	99310637	99310638	chr13:99310638:C:T	rs9554581	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr13	99384402	99384403	chr13:99384403:G:C	rs55943303	G	C	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr13	99859749	99859750	chr13:99859750:T:C	rs17658053	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	10.999623560374875	7.030192584005994	ACAATCATAGTGTAATTA
chr13	99905545	99905546	chr13:99905546:T:A	rs1034824099	T	A	T	Msx3.mouse_homeodomain_1	0	1	+	7.733014947917041	7.8154476468870895	TCCATTCTGTTCCAATTA
chr13	99935911	99935912	chr13:99935912:T:C	rs9585291	T	C	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr13	100533514	100533515	chr13:100533515:A:G	rs837343	A	G	G	Msx3.mouse_homeodomain_1	7	1	+	9.527561681258781	8.417746143935187	ACTATTAAAGAAAAATTA
chr13	101573833	101573834	chr13:101573834:G:T	rs1572326	G	T	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr13	101584095	101584096	chr13:101584096:G:C	rs9513922	G	C	a	Msx3.mouse_homeodomain_1	0	1	+	15.55355361093931	15.186202101064701	GTAATTAAATATCAATTA
chr13	101674097	101674098	chr13:101674098:G:A	rs7323652	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr13	101674105	101674106	chr13:101674106:G:A	rs6491639	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr13	102045945	102045946	chr13:102045946:A:G	rs7332448	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	10.06029282097333	3.1528275840493274	GCAATTACCAAGTGATTG
chr13	102580991	102580992	chr13:102580992:T:C	rs8001558	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	8.94423908363536	6.55125334112486	GCAGTTAACTATCAATTG
chr13	102596151	102596152	chr13:102596152:C:T	rs74109902	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.479839807456496	7.282888782281087	TCAATTATAGAGCCATAA
chr13	102839525	102839526	chr13:102839526:A:G	rs4771435	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.261321940679359	4.291890964310482	ACAATTAATTTCCCTTTA
chr13	103395130	103395131	chr13:103395131:G:A	rs7329960	G	A	A	Msx3.mouse_homeodomain_1	14	1	-	9.997521136025	9.231739822929633	ATAATTAAATAGAACTTA
chr13	103717097	103717098	chr13:103717098:C:T	rs7328544	C	T	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr13	103942171	103942172	chr13:103942172:T:A	rs9586323	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	9.288888106470537	3.209974687112679	TCAATCAATTGCCAATCA
chr13	103976517	103976518	chr13:103976518:C:T	rs11069538	C	T	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr13	104140555	104140556	chr13:104140556:T:C	rs79920435	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	12.691917021179687	8.103822802156536	GTAATTGGAGTCCAATTA
chr13	104297263	104297264	chr13:104297264:G:A	rs7986689	G	A	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr13	105142798	105142799	chr13:105142799:C:T	rs3007262	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr13	105167508	105167509	chr13:105167509:G:T	rs9634543	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	9.186384730610058	6.486095353669593	ACAATTATGAAGCAAATA
chr13	105608819	105608820	chr13:105608820:A:G	rs149449054	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr13	105608851	105608852	chr13:105608852:C:T	rs191196199	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr13	105670987	105670988	chr13:105670988:C:A	rs4411376	C	A	C	Msx3.mouse_homeodomain_1	0	1	+	8.304357545013907	7.563199499723775	CAAATTTGGAACTAATTA
chr13	105735683	105735684	chr13:105735684:T:C	rs4111152	T	C	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr13	105830644	105830645	chr13:105830645:T:C	rs7322890	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr13	106002809	106002810	chr13:106002810:G:C	rs77383537	G	C	G	Msx3.mouse_homeodomain_1	3	1	-	9.218002966292477	8.1287463544565	GTACTTAACATACCATTA
chr13	106405914	106405915	chr13:106405915:C:G	rs9555245	C	G	C	Msx3.mouse_homeodomain_1	11	1	+	7.478648003015272	7.393182462305011	GGAATTAGATGCCGATCA
chr13	106467011	106467012	chr13:106467012:C:T	rs9520081	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr13	106591576	106591577	chr13:106591577:G:A	rs2391346	G	A	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr13	106845172	106845173	chr13:106845173:C:A	rs9514587	C	A	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr13	107024443	107024444	chr13:107024444:A:G	rs61965465	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	8.715953860158482	10.161076523724965	GTCATTATGTAGTAATTG
chr13	107730793	107730794	chr13:107730794:A:G	rs3905064	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr13	107763282	107763283	chr13:107763283:T:C	rs9559151	T	C	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr13	108283340	108283341	chr13:108283341:A:G	rs16972222	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr13	108283374	108283375	chr13:108283375:T:G	rs1224141	T	G	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr13	108777554	108777555	chr13:108777555:A:T	rs9514906	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	7.180383959264053	2.853623607914498	GCAATCAGGAAGCTATTG
chr13	108808078	108808079	chr13:108808079:C:A	rs10492414	C	A	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr13	109274392	109274393	chr13:109274393:A:G	rs76515125	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr13	109274432	109274433	chr13:109274433:G:A	rs74924164	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr13	109406765	109406766	chr13:109406766:C:T	rs12585282	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr13	109418234	109418235	chr13:109418235:C:T	rs1328239	C	T	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr13	110021223	110021224	chr13:110021224:A:C	rs9301427	A	C	A	Msx3.mouse_homeodomain_1	7	1	+	6.951858502775705	5.561971956070948	CCACTTAACACACAATTC
chr13	110070472	110070473	chr13:110070473:C:T	rs117640423	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr13	110239493	110239494	chr13:110239494:C:T	rs6492251	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr13	110244939	110244940	chr13:110244940:T:C	rs9515173	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr13	110494866	110494867	chr13:110494867:G:A	rs59977960	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.243803736382905	7.135294181218158	GTCATTAACACTCCATTA
chr13	110494883	110494884	chr13:110494884:A:C	rs9555712	A	C	C	Msx3.mouse_homeodomain_1	17	1	+	8.243803736382905	3.6569471552563955	GTCATTAACACTCCATTA
chr13	110664535	110664536	chr13:110664536:C:A	rs8000867	C	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr13	111056391	111056392	chr13:111056392:G:T	rs4773312	G	T	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr13	111126930	111126931	chr13:111126931:T:C	rs7985019	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr13	111327802	111327803	chr13:111327803:T:C	rs942650	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr13	111373583	111373584	chr13:111373584:G:A	rs77052260	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr13	111853331	111853332	chr13:111853332:C:T	rs9577318	C	T	.	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr13	111972860	111972861	chr13:111972861:G:C	rs1747081	G	C	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr13	112055015	112055016	chr13:112055016:G:A	rs111749823	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr13	112169692	112169693	chr13:112169693:G:A	rs9577628	G	A	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr13	112248998	112248999	chr13:112248999:A:G	rs56674203	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	12.660998501224	11.584407330287526	ACAATTAGAAAGCACTTA
chr13	112588676	112588677	chr13:112588677:A:G	rs979475870	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr13	112588711	112588712	chr13:112588712:C:T	rs552867912	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr13	112668952	112668953	chr13:112668953:A:G	rs79291001	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr13	113170859	113170860	chr13:113170860:C:G	rs3818334	C	G	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr13	113420586	113420587	chr13:113420587:C:G	rs34097633	C	G	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr13	113772063	113772064	chr13:113772064:T:C	rs9604526	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	7.889740992594015	5.372872364656938	ACAATGAGATACCACTTA
chr13	113904674	113904675	chr13:113904675:G:A	rs116655847	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	10.308652028846243	9.200142473681503	GCAGTTAATAAGCAATCA
chr13	114120839	114120840	chr13:114120840:C:T	rs72659584	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	10.365905393652667	9.257395838487922	GTAATTAGTAAGAAATTG
chr14	16097467	16097468	chr14:16097468:A:T	rs1319621069	A	T	.	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr14	16097487	16097488	chr14:16097488:A:G	rs925128271	A	G	.	Msx3.mouse_homeodomain_1	3	1	+	8.975403617750384	5.005972641381508	TCAATTAAATTCCATTCA
chr14	16097501	16097502	chr14:16097502:A:G	rs1389983240	A	G	.	Msx3.mouse_homeodomain_1	17	1	+	8.975403617750384	6.407244020567181	TCAATTAAATTCCATTCA
chr14	20601089	20601090	chr14:20601090:T:C	rs1272514	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	9.208876033157527	6.69200740522045	TCAATTAACATGTGATCA
chr14	20804563	20804564	chr14:20804564:T:G	rs28378018	T	G	T	Msx3.mouse_homeodomain_1	8	1	-	11.814170937328363	10.89460411269581	CCCATTGAAGTGCAATTA
chr14	21042084	21042085	chr14:21042085:T:A	rs3748352	T	A	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr14	21196550	21196551	chr14:21196551:T:G	rs2319688	T	G	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr14	21256321	21256322	chr14:21256322:G:C	rs10142669	G	C	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr14	21498730	21498731	chr14:21498731:C:T	rs778025374	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr14	21910473	21910474	chr14:21910474:T:C	rs12891375	T	C	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr14	22084640	22084641	chr14:22084641:C:T	rs559475568	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr14	22084655	22084656	chr14:22084656:C:G	rs1284020318	C	G	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr14	22560847	22560848	chr14:22560848:C:G	rs6572542	C	G	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr14	22566123	22566124	chr14:22566124:C:A	rs5742865	C	A	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr14	22866534	22866535	chr14:22866535:A:G	rs17277907	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr14	23143376	23143377	chr14:23143377:G:A	rs927041	G	A	A	Msx3.mouse_homeodomain_1	8	1	-	7.269971595785408	7.152267947260412	CCCATTTGCAACCCATTA
chr14	23161338	23161339	chr14:23161339:C:T	rs8014900	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr14	23485580	23485581	chr14:23485581:T:C	rs8010694	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr14	24869623	24869624	chr14:24869624:T:A	rs12886766	T	A	A	Msx3.mouse_homeodomain_1	9	1	-	10.084824296497933	9.670683024624848	CCAATTATGATGCGATTT
chr14	24913088	24913089	chr14:24913089:C:T	rs117948473	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr14	24922195	24922196	chr14:24922196:T:C	rs75519931	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.929563713076312	1.831018033207179	GCCATTGATGAAAAATTA
chr14	25109996	25109997	chr14:25109997:T:A	rs10138503	T	A	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr14	25548122	25548123	chr14:25548123:T:C	rs7157906	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr14	26378848	26378849	chr14:26378849:G:A	rs8022777	G	A	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr14	26529067	26529068	chr14:26529068:C:T	rs76154415	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr14	26592935	26592936	chr14:26592936:A:G	rs17583737	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr14	26983991	26983992	chr14:26983992:A:G	rs2180374	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr14	27092266	27092267	chr14:27092267:C:G	rs79087392	C	G	C	Msx3.mouse_homeodomain_1	13	1	+	9.785451614311231	10.612370491882412	GCAATTGCAATGTCATTA
chr14	27294887	27294888	chr14:27294888:A:G	rs203566	A	G	g	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr14	27531043	27531044	chr14:27531044:G:A	rs2022898	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	11.640883993303863	10.817293249043683	CCACTTGGAAAGCAATTA
chr14	28408935	28408936	chr14:28408936:T:C	rs61983149	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	9.271037016536152	9.388740665061146	TCAATTAATTAATAATAA
chr14	30083877	30083878	chr14:30083878:T:C	rs225841	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	10.979873310533272	8.463004682596193	TCAATTAGTTAAAAATTA
chr14	30284048	30284049	chr14:30284049:C:A	rs1490010799	C	A	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr14	30748435	30748436	chr14:30748436:A:G	rs11847318	A	G	g	Msx3.mouse_homeodomain_1	10	1	+	8.124073896753586	7.047482725817111	TCAATTACCCATCAATAA
chr14	30849017	30849018	chr14:30849018:A:G	rs78842643	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.676515547818634	1.5779698679495007	GCAATCATTTCACAATCA
chr14	30915923	30915924	chr14:30915924:A:G	rs7140306	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	10.08445878697615	5.496364567953	GTACTTAACAAAAAATTA
chr14	30915937	30915938	chr14:30915938:C:A	rs67648672	C	A	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr14	30943792	30943793	chr14:30943793:T:C	rs7150699	T	C	t	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr14	30943804	30943805	chr14:30943805:C:T	rs78192502	C	T	c	Msx3.mouse_homeodomain_1	0	1	+	7.5307775799904	6.70718683573022	CCAATCATGAGGTACTTA
chr14	30971373	30971374	chr14:30971374:A:T	rs61976796	A	T	A	Msx3.mouse_homeodomain_1	6	1	+	8.025417268564073	4.433135061451553	ACAATTAAAGTCCCATGA
chr14	31029763	31029764	chr14:31029764:C:T	rs1236793961	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr14	31510225	31510226	chr14:31510226:A:G	rs28369136	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr14	31669195	31669196	chr14:31669196:A:G	rs2378936	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr14	32050952	32050953	chr14:32050953:T:C	rs17098462	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr14	32318547	32318548	chr14:32318548:A:G	rs7146393	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	7.12256512929159	6.23047609722034	GTAATTAGGTTGCACTAA
chr14	32507175	32507176	chr14:32507176:G:A	rs75705832	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr14	32568314	32568315	chr14:32568315:G:T	rs2383347	G	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr14	32705328	32705329	chr14:32705329:A:T	rs12431571	A	T	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr14	33207996	33207997	chr14:33207997:A:G	rs1958023	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	9.23839138159363	8.161800210657155	TCAATTGTGAAGTGATTA
chr14	33240904	33240905	chr14:33240905:A:G	rs879547657	A	G	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr14	33332910	33332911	chr14:33332911:T:C	rs4982069	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr14	33332985	33332986	chr14:33332986:G:A	rs2133891	G	A	A	Msx3.mouse_homeodomain_1	9	1	+	7.802745946225426	8.743289938611571	TCAATTACTGAGCAAATA
chr14	33333828	33333829	chr14:33333829:C:G	rs17567572	C	G	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr14	33920861	33920862	chr14:33920862:G:C	rs9671702	G	C	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr14	34089250	34089251	chr14:34089251:T:C	rs7145664	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	10.458610038450304	4.360064358581171	ACAATTAAAAAGTGATTT
chr14	34516299	34516300	chr14:34516300:G:C	rs7766	G	C	G	Msx3.mouse_homeodomain_1	14	1	+	9.03093904278019	10.058054223549153	GTAATTAAATGCCAGTTG
chr14	34598273	34598274	chr14:34598274:T:C	rs7158783	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	6.335011727106947	3.210062573513094	CCCATAAAGGAGCAATTC
chr14	34688977	34688978	chr14:34688978:T:C	rs35273436	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr14	35215733	35215734	chr14:35215734:C:G	rs116431248	C	G	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr14	35507069	35507070	chr14:35507070:C:A	rs10483454	C	A	C	Msx3.mouse_homeodomain_1	11	1	+	10.077201941338238	8.794785375452562	CTCATAAGCAACCAATTA
chr14	35558553	35558554	chr14:35558554:T:C	rs11623264	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr14	36712558	36712559	chr14:36712559:T:C	rs1955735	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	10.415081225533246	9.408531892688035	TTAATTACATAGCTATTA
chr14	38141207	38141208	chr14:38141208:C:T	rs2899867	C	T	T	Msx3.mouse_homeodomain_1	11	1	+	7.059346738060947	5.349116319077236	GGAATTAAGGACCCATTT
chr14	38187976	38187977	chr14:38187977:C:T	rs2812083	C	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr14	38200535	38200536	chr14:38200536:C:A	rs77266093	C	A	C	Msx3.mouse_homeodomain_1	1	1	+	8.350918679384195	5.650629302443729	GCAATGATAAAGCAATTC
chr14	38502317	38502318	chr14:38502318:T:A	rs8017363	T	A	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr14	38854347	38854348	chr14:38854348:T:C	rs17605463	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	9.995961687469975	8.919370516533501	ATCATTATGTATCAATTA
chr14	38868558	38868559	chr14:38868559:A:G	rs371310530	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.7106973789646025	3.1226031599414528	CCATTTACCTAGAAATTA
chr14	38881318	38881319	chr14:38881319:T:C	rs6571878	T	C	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr14	38881319	38881320	chr14:38881320:G:A	rs7146158	G	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr14	39265895	39265896	chr14:39265896:A:C	rs17109079	A	C	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr14	39265899	39265900	chr14:39265900:G:C	rs12587713	G	C	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr14	39266454	39266455	chr14:39266455:A:G	rs376775224	A	G	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr14	39592811	39592812	chr14:39592812:C:A	rs2180390	C	A	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr14	39664344	39664345	chr14:39664345:A:G	rs10483534	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr14	40168428	40168429	chr14:40168429:G:A	rs8003512	G	A	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr14	40417990	40417991	chr14:40417991:G:A	rs558247933	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr14	40618410	40618411	chr14:40618411:G:C	rs17111024	G	C	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr14	40625209	40625210	chr14:40625210:C:T	rs8009265	C	T	c	Msx3.mouse_homeodomain_1	0	1	-	7.453899609793756	6.345390054629012	GTACTCACAAACCACTTA
chr14	40637919	40637920	chr14:40637920:A:C	rs34216374	A	C	A	Msx3.mouse_homeodomain_1	7	1	+	6.771108329193711	5.3812217824889546	GCAAGTAAGTTCCTATTA
chr14	41049668	41049669	chr14:41049669:C:T	rs71409973	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr14	41375890	41375891	chr14:41375891:T:G	rs8016057	T	G	T	Msx3.mouse_homeodomain_1	14	1	-	11.234625786633273	7.673646748379086	GCCATTGCAAGCCAATTA
chr14	41442818	41442819	chr14:41442819:A:G	rs114786290	A	G	A	Msx3.mouse_homeodomain_1	11	1	+	8.789036990497703	9.985988015673112	CTACTAAAAACACAATTA
chr14	42047745	42047746	chr14:42047746:A:G	rs78828435	A	G	.	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr14	42278035	42278036	chr14:42278036:G:A	rs7146304	G	A	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr14	42448961	42448962	chr14:42448962:T:C	rs10134253	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr14	42508611	42508612	chr14:42508612:T:G	rs10131395	T	G	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr14	42562902	42562903	chr14:42562903:G:A	rs12432206	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr14	43306372	43306373	chr14:43306373:T:A	rs9671597	T	A	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr14	43306394	43306395	chr14:43306395:C:T	rs9672020	C	T	T	Msx3.mouse_homeodomain_1	11	1	+	9.050448776746428	7.340218357762718	GTAATGATAAACCAATCA
chr14	43407138	43407139	chr14:43407139:T:A	rs1494006	T	A	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr14	44031376	44031377	chr14:44031377:C:T	rs62012600	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.149479722379517	6.7043570588130335	CCAGTTAATTACCAGTTA
chr14	44404035	44404036	chr14:44404036:C:T	rs35193863	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	9.61072962004726	10.687320790983735	ATAATTAAAAGCAAATTT
chr14	44847904	44847905	chr14:44847905:T:C	rs11851357	T	C	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr14	46005132	46005133	chr14:46005133:A:G	rs17116830	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	7.904193319028177	5.3360337218449745	CAAATTGGATGCAAATTA
chr14	46352776	46352777	chr14:46352777:G:A	rs12882450	G	A	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr14	48582305	48582306	chr14:48582306:T:A	rs7159518	T	A	A	Msx3.mouse_homeodomain_1	11	1	-	10.276537519127789	9.848723666029752	GAAATAAAAAAATAATTA
chr14	48840244	48840245	chr14:48840245:G:C	rs4414398	G	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr14	49021322	49021323	chr14:49021323:T:G	rs1016624281	T	G	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr14	49364183	49364184	chr14:49364184:T:C	rs2150487	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr14	49880741	49880742	chr14:49880742:C:T	rs141656145	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr14	49921302	49921303	chr14:49921303:A:G	rs12590310	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.616558353353206	5.028464134330054	AATATTAATTTCCAATTA
chr14	50094226	50094227	chr14:50094227:A:G	rs7141809	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr14	50095996	50095997	chr14:50095997:T:C	rs143646510	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.130014138194315	3.1605831618254374	CCAATCAAGGGATCATTA
chr14	50213418	50213419	chr14:50213419:C:T	rs10142902	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr14	50396432	50396433	chr14:50396433:G:A	rs539462459	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr14	50689117	50689118	chr14:50689118:A:C	rs145425830	A	C	a	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr14	51070549	51070550	chr14:51070550:A:G	rs76152035	A	G	A	Msx3.mouse_homeodomain_1	10	1	-	7.316775098009422	6.272802798135706	ACCATTATAATGCAAATA
chr14	51442460	51442461	chr14:51442461:C:T	rs61029578	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr14	51516850	51516851	chr14:51516851:A:T	rs12894854	A	T	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr14	51607534	51607535	chr14:51607535:A:C	rs114665729	A	C	A	Msx3.mouse_homeodomain_1	9	1	-	7.515774999309982	6.989372278796918	TTACTTACATGGCAATCA
chr14	52187917	52187918	chr14:52187918:T:G	rs2093022	T	G	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr14	52392533	52392534	chr14:52392534:G:A	rs117303872	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr14	52678731	52678732	chr14:52678732:G:A	rs77990901	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr14	52734912	52734913	chr14:52734913:C:T	rs2065054	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr14	53260616	53260617	chr14:53260617:C:T	rs10438124	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	8.6475590045305	9.53964803660175	ACAATTATCCGACAATCA
chr14	53296496	53296497	chr14:53296497:A:G	rs17253124	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.872023648006525	1.9645584110825216	CTAATGAAAATCTGATTA
chr14	53305435	53305436	chr14:53305436:C:T	rs1345969	C	T	T	Msx3.mouse_homeodomain_1	14	1	+	6.460250099787015	5.694468786691648	CCAATTGGAGGCCACTTG
chr14	53413815	53413816	chr14:53413816:G:A	rs75657231	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr14	53523509	53523510	chr14:53523510:A:G	rs61987599	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	11.717123863244634	7.129029644221483	ACACTTAAAACACAATTA
chr14	53619744	53619745	chr14:53619745:A:G	rs17706401	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr14	53620165	53620166	chr14:53620166:A:G	rs1046005509	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	11.689061759145392	7.100967540122244	CCAATTACAAACAAATTG
chr14	53891594	53891595	chr14:53891595:G:A	rs8008644	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr14	54049125	54049126	chr14:54049126:G:A	rs11158000	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr14	54132246	54132247	chr14:54132247:T:G	rs11622022	T	G	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr14	54137842	54137843	chr14:54137843:A:T	rs186028896	A	T	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr14	54188411	54188412	chr14:54188412:T:A	rs10142814	T	A	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr14	54331876	54331877	chr14:54331877:C:T	rs10483633	C	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr14	54653724	54653725	chr14:54653725:G:A	rs12586705	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr14	55454407	55454408	chr14:55454408:G:A	rs556306998	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr14	55476867	55476868	chr14:55476868:C:A	rs10140986	C	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr14	55625985	55625986	chr14:55625986:A:G	rs79262019	A	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr14	55626000	55626001	chr14:55626001:A:G	rs12895070	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr14	55928474	55928475	chr14:55928475:T:C	rs7359067	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr14	56044744	56044745	chr14:56044745:C:T	rs241529	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr14	56462222	56462223	chr14:56462223:A:G	rs78101783	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr14	56462243	56462244	chr14:56462244:G:A	rs74901540	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	7.14736842522711	5.702245761660628	GCAGTTGGACTCCGATTA
chr14	56543601	56543602	chr14:56543602:G:C	rs10142042	G	C	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr14	56593421	56593422	chr14:56593422:G:A	rs12893219	G	A	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr14	56892057	56892058	chr14:56892058:G:A	rs7148711	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr14	56958981	56958982	chr14:56958982:G:C	rs4901744	G	C	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr14	56959036	56959037	chr14:56959037:G:T	rs709997	G	T	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr14	57068926	57068927	chr14:57068927:G:T	rs9805964	G	T	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr14	57931197	57931198	chr14:57931198:A:G	rs808225	A	G	g	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr14	57976275	57976276	chr14:57976276:G:A	rs7151464	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr14	58201063	58201064	chr14:58201064:G:A	rs556338462	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	7.521806527419483	6.3248555022440724	GGAAGTAACAGGCAATTA
chr14	58747823	58747824	chr14:58747824:C:T	rs311864	C	T	T	Msx3.mouse_homeodomain_1	13	1	-	8.497827523519842	10.55510170242604	CAAATAAACAGGCGATTA
chr14	58871711	58871712	chr14:58871712:C:A	rs418212	C	A	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr14	58871716	58871717	chr14:58871717:T:A	rs11158222	T	A	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr14	58871751	58871752	chr14:58871752:C:G	rs418239	C	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr14	58980858	58980859	chr14:58980859:A:G	rs6573231	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr14	58980906	58980907	chr14:58980907:C:T	rs11158238	C	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr14	59337778	59337779	chr14:59337779:C:T	rs10483715	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr14	59436385	59436386	chr14:59436386:A:C	rs3850306	A	C	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr14	59600242	59600243	chr14:59600243:G:A	rs1219927030	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr14	60030586	60030587	chr14:60030587:A:G	rs78506712	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	6.753361398853651	5.643545861530058	CCAATCCAGGCACAATTA
chr14	60256646	60256647	chr14:60256647:G:A	rs7147512	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr14	60553898	60553899	chr14:60553899:C:A	rs1955694	C	A	C	Msx3.mouse_homeodomain_1	0	1	-	9.065840273233345	7.874898019098553	GCAATTAATGATTATTTA
chr14	61145197	61145198	chr14:61145198:A:C	rs950398814	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	7.443583887139082	3.1985680806669206	GTTATTACCCTGCCATTA
chr14	61525313	61525314	chr14:61525314:C:T	rs1111108	C	T	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr14	61553855	61553856	chr14:61553856:C:T	rs149720369	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	6.806274353767123	7.916089891090718	GCAATGTGTACCCAATTA
chr14	61612264	61612265	chr14:61612265:G:T	rs10133965	G	T	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr14	61929839	61929840	chr14:61929840:T:C	chr14:61929840:T:C	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr14	62252164	62252165	chr14:62252165:T:G	rs12100693	T	G	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr14	62252199	62252200	chr14:62252200:G:A	rs12101085	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr14	62381775	62381776	chr14:62381776:A:G	rs80336442	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	6.682215798925129	-0.22524943799887676	GCAATTAAGCTGGCATTG
chr14	62400157	62400158	chr14:62400158:T:A	rs10135748	T	A	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr14	62465505	62465506	chr14:62465506:C:T	rs1948280	C	T	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr14	62493789	62493790	chr14:62493790:A:G	rs10498500	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.458799453216474	3.489368476847597	CTCATTAATGGGTCATTA
chr14	62616885	62616886	chr14:62616886:C:T	rs7154203	C	T	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr14	62692016	62692017	chr14:62692017:A:G	rs11622348	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr14	63389290	63389291	chr14:63389291:G:A	rs75040645	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr14	63457683	63457684	chr14:63457684:C:T	rs766079	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr14	63784638	63784639	chr14:63784639:A:C	rs4591051	A	C	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr14	63800180	63800181	chr14:63800181:G:A	rs8005553	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr14	64363695	64363696	chr14:64363696:T:C	rs1256100	T	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr14	64986596	64986597	chr14:64986597:C:T	rs1347955386	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr14	65403474	65403475	chr14:65403475:T:C	rs913880743	T	C	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr14	65637984	65637985	chr14:65637985:A:T	rs10148529	A	T	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr14	65658671	65658672	chr14:65658672:T:C	rs61154472	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	7.6187800831519015	6.542188912215428	GGAATTAGATAGTAGTTA
chr14	65790575	65790576	chr14:65790576:G:A	rs11848463	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	7.119751658000427	5.922800632825017	GCAATCAATAAGTCCTTA
chr14	65972944	65972945	chr14:65972945:T:C	rs116408840	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.512641488778492	5.5432105124096145	CCAATCAGTACCCAATTG
chr14	66444529	66444530	chr14:66444530:G:C	rs8011794	G	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr14	66493976	66493977	chr14:66493977:A:G	rs75192864	A	G	A	Msx3.mouse_homeodomain_1	1	1	+	8.27835367854205	7.714294198454202	CAAATTAAGTCTAAATTA
chr14	67145311	67145312	chr14:67145312:T:C	rs61990925	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr14	67539755	67539756	chr14:67539756:C:T	rs61682079	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr14	67835409	67835410	chr14:67835410:A:G	rs17783160	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	9.29403193818862	7.2367577592824235	CTGATTAAAATCTACTTA
chr14	67938526	67938527	chr14:67938527:A:C	rs72725141	A	C	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr14	68018385	68018386	chr14:68018386:T:C	rs10129355	T	C	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr14	68111777	68111778	chr14:68111778:G:C	chr14:68111778:G:C	G	C	G	Msx3.mouse_homeodomain_1	7	1	+	6.904002470305499	6.623931460924337	GCAAGAAGGGAGCAATTA
chr14	68111794	68111795	chr14:68111795:A:G	rs34777538	A	G	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr14	68112593	68112594	chr14:68112594:A:G	rs17104953	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr14	68452298	68452299	chr14:68452299:A:T	rs10467820	A	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr14	68519208	68519209	chr14:68519209:T:G	rs1018477966	T	G	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr14	68577836	68577837	chr14:68577837:C:T	rs79071597	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr14	68577837	68577838	chr14:68577838:A:G	rs73284028	A	G	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr14	68585182	68585183	chr14:68585183:T:G	rs761944	T	G	T	Msx3.mouse_homeodomain_1	9	1	-	7.864547199540243	6.558316895595911	GTTATTAAAATGCAAATA
chr14	68958749	68958750	chr14:68958750:T:C	rs117672662	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr14	69133722	69133723	chr14:69133723:T:C	rs79378462	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr14	69585228	69585229	chr14:69585229:A:C	rs893281013	A	C	A	Msx3.mouse_homeodomain_1	17	1	-	8.850685002883106	9.6533116015787	CTAATCACACACCAATTT
chr14	69631636	69631637	chr14:69631637:A:G	rs762049	A	G	g	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr14	69768100	69768101	chr14:69768101:T:C	rs181278650	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr14	69768108	69768109	chr14:69768109:A:G	rs115376236	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr14	70617026	70617027	chr14:70617027:A:G	rs73286047	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr14	70710180	70710181	chr14:70710181:A:G	rs8010886	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr14	70755725	70755726	chr14:70755726:T:C	rs2877693	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.903512880764598	5.315418661741448	ACAATTTATAACCCATTA
chr14	70755745	70755746	chr14:70755746:G:C	rs148412963	G	C	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr14	71130913	71130914	chr14:71130914:G:A	rs10147124	G	A	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr14	71236145	71236146	chr14:71236146:A:G	rs150242934	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr14	72185947	72185948	chr14:72185948:T:G	rs149647	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	8.736950023248472	5.8527569667710955	AAAATTATGTACGAATTA
chr14	72622004	72622005	chr14:72622005:C:T	rs2526930	C	T	t	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr14	73125445	73125446	chr14:73125446:C:A	rs12586509	C	A	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr14	73344840	73344841	chr14:73344841:A:C	rs17492268	A	C	A	Msx3.mouse_homeodomain_1	10	1	-	8.849607753636402	8.266588106675048	TCATTTAACTTGTAATTA
chr14	73439238	73439239	chr14:73439239:A:G	rs4903111	A	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr14	73439819	73439820	chr14:73439820:A:C	rs59923225	A	C	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr14	73461750	73461751	chr14:73461751:A:G	rs8015077	A	G	.	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr14	74155587	74155588	chr14:74155588:T:C	rs4899498	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr14	74155630	74155631	chr14:74155631:C:G	rs4903195	C	G	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr14	74250995	74250996	chr14:74250996:C:A	rs62006811	C	A	C	Msx3.mouse_homeodomain_1	17	1	-	10.053723410570637	9.251096811875042	CCAATTAAATCGGAATTG
chr14	74396906	74396907	chr14:74396907:G:A	rs117347619	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	8.324005541826736	9.264549534212879	GAAATAAACGCACAATTA
chr14	75302605	75302606	chr14:75302606:C:T	rs28432116	C	T	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr14	75598832	75598833	chr14:75598833:A:C	rs2075141	A	C	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr14	75636288	75636289	chr14:75636289:G:C	rs193093296	G	C	G	Msx3.mouse_homeodomain_1	10	1	+	10.332293288905166	9.871340635992805	CTAATCAAAGGCCAATTG
chr14	75721356	75721357	chr14:75721357:A:G	rs117500053	A	G	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr14	76128505	76128506	chr14:76128506:C:T	rs2160878	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr14	76957557	76957558	chr14:76957558:T:C	rs55676799	T	C	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr14	77096957	77096958	chr14:77096958:T:G	rs28498055	T	G	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr14	77142375	77142376	chr14:77142376:A:G	rs10144557	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	10.18043552395217	9.850494571236073	CTAATTATGATCTAATCA
chr14	77372162	77372163	chr14:77372163:A:G	rs8005730	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	7.550841344399331	7.6685449929243275	GCCATCAATGATAAATTA
chr14	77843758	77843759	chr14:77843759:T:C	rs741574	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr14	77883166	77883167	chr14:77883167:G:A	rs76278008	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr14	78705129	78705130	chr14:78705130:C:T	rs7143785	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr14	78751381	78751382	chr14:78751382:G:A	rs60333318	G	A	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr14	78777701	78777702	chr14:78777702:A:G	rs987644	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	8.31777417236703	5.875696945435474	CCATTTAACAAAAAATTA
chr14	78958131	78958132	chr14:78958132:G:C	rs11159390	G	C	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr14	79070098	79070099	chr14:79070099:A:G	rs12895916	A	G	a	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr14	79575205	79575206	chr14:79575206:T:C	rs145214672	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr14	79704790	79704791	chr14:79704791:A:G	rs4486812	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	8.63435375132761	6.241368008817108	TAAATTAGAGTGCAATTT
chr14	79708924	79708925	chr14:79708925:T:G	rs112460474	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr14	79915633	79915634	chr14:79915634:C:T	rs10483938	C	T	T	Msx3.mouse_homeodomain_1	7	1	+	9.363738481654325	9.693679434370425	TCAATTACAAAGCAATCT
chr14	80619247	80619248	chr14:80619248:G:A	rs11620910	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr14	80978954	80978955	chr14:80978955:T:C	rs5002906	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr14	81477965	81477966	chr14:81477966:G:T	rs12434541	G	T	g	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr14	81619879	81619880	chr14:81619880:G:A	rs73348008	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr14	82113990	82113991	chr14:82113991:G:A	rs17116351	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr14	82190851	82190852	chr14:82190852:G:A	rs75388394	G	A	.	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr14	82508491	82508492	chr14:82508492:A:G	rs78197886	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr14	82719986	82719987	chr14:82719987:G:C	rs10132451	G	C	C	Msx3.mouse_homeodomain_1	1	1	-	10.92302435341605	7.658675496387734	GCAATTACTTTGCTATTA
chr14	82735149	82735150	chr14:82735150:G:A	rs76357243	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr14	83133665	83133666	chr14:83133666:C:T	rs2210174	C	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr14	83133828	83133829	chr14:83133829:T:G	rs12896695	T	G	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr14	83261124	83261125	chr14:83261125:C:T	rs12435777	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr14	83291748	83291749	chr14:83291749:C:T	rs17118325	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr14	83895137	83895138	chr14:83895138:A:G	rs17713369	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	8.975663279592386	8.083574247521138	CTCATAAAGTATCAATTA
chr14	84432980	84432981	chr14:84432981:T:C	rs187286610	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr14	84450724	84450725	chr14:84450725:C:A	rs11624797	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	6.470806661336407	3.959497901567581	ACACTTGGCACCCGATTA
chr14	84726461	84726462	chr14:84726462:T:A	rs78049207	T	A	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr14	85241571	85241572	chr14:85241572:A:G	rs7158899	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	8.090014814434893	4.96506566084104	GCAATTAAAGTGTCATTC
chr14	85241579	85241580	chr14:85241580:T:C	rs1667504	T	C	C	Msx3.mouse_homeodomain_1	8	1	-	8.090014814434893	7.083465481589682	GCAATTAAAGTGTCATTC
chr14	85357181	85357182	chr14:85357182:T:C	rs10144610	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr14	86539711	86539712	chr14:86539712:C:T	rs140152171	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr14	86539737	86539738	chr14:86539738:A:G	rs78044389	A	G	A	Msx3.mouse_homeodomain_1	0	1	-	7.962985729668694	8.786576473928871	TTCATTAAACATCAATCA
chr14	86575188	86575189	chr14:86575189:A:T	rs73321988	A	T	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr14	86575189	86575190	chr14:86575190:T:A	rs76371983	T	A	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr14	86575195	86575196	chr14:86575196:T:A	rs958921234	T	A	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr14	86740584	86740585	chr14:86740585:A:T	rs72699070	A	T	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr14	86935293	86935294	chr14:86935294:A:G	rs12435880	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr14	87765088	87765089	chr14:87765089:G:A	rs72691822	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr14	87809644	87809645	chr14:87809645:G:A	rs11849666	G	A	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr14	87830426	87830427	chr14:87830427:C:G	rs72691845	C	G	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr14	88005432	88005433	chr14:88005433:T:G	rs10139526	T	G	T	Msx3.mouse_homeodomain_1	16	1	+	8.590582338077322	3.5170495619679927	TAAATTTAGAACTAATTA
chr14	88040216	88040217	chr14:88040217:T:G	rs76539325	T	G	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr14	88065376	88065377	chr14:88065377:G:A	rs117822354	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr14	88210799	88210800	chr14:88210800:G:C	rs61975837	G	C	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr14	88210800	88210801	chr14:88210801:C:G	rs76079059	C	G	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr14	88249846	88249847	chr14:88249847:A:C	rs7160546	A	C	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr14	88904775	88904776	chr14:88904776:T:C	rs17124954	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr14	89135158	89135159	chr14:89135159:C:T	rs1951859	C	T	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr14	89270844	89270845	chr14:89270845:T:A	rs28416219	T	A	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr14	89282464	89282465	chr14:89282465:T:C	rs12436375	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.17239500666986	5.202964030300977	CCAATCGAAGAGCAATCA
chr14	89366961	89366962	chr14:89366962:A:G	rs10148763	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr14	89386643	89386644	chr14:89386644:A:G	rs6575060	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr14	90137853	90137854	chr14:90137854:G:C	rs6575104	G	C	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr14	90248669	90248670	chr14:90248670:C:T	rs11622257	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	11.34808232752312	12.392054627396835	ACAATAAAAACTCAATTA
chr14	90248680	90248681	chr14:90248681:A:G	rs7147809	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr14	90440240	90440241	chr14:90440241:C:T	rs1298208	C	T	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr14	90547284	90547285	chr14:90547285:A:G	rs1294576	A	G	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr14	90648831	90648832	chr14:90648832:A:C	rs72691754	A	C	A	Msx3.mouse_homeodomain_1	12	1	+	9.383203194320293	11.894511954089117	ACAATTATGAAGAAATTT
chr14	90661954	90661955	chr14:90661955:T:C	rs74469335	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.837234523974008	4.249140304950859	GCAGTTCTATACCAATTA
chr14	90661964	90661965	chr14:90661965:A:G	rs10130644	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	8.837234523974008	2.738688844104877	GCAGTTCTATACCAATTA
chr14	90693157	90693158	chr14:90693158:T:C	rs34328807	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.974123357198525	1.0666581202745198	GCAATAAAAGATAAATTG
chr14	90795723	90795724	chr14:90795724:G:A	rs77212952	G	A	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr14	91194421	91194422	chr14:91194422:T:C	rs1044496253	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	6.345412142694917	2.37598116632604	GCCATAAGCTGGCAATTT
chr14	91272351	91272352	chr14:91272352:T:G	rs12878426	T	G	T	Msx3.mouse_homeodomain_1	6	1	-	10.389481951838665	6.1444661453665	CCAATTAGGATGCAATGA
chr14	91295860	91295861	chr14:91295861:T:C	rs112001019	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr14	91600314	91600315	chr14:91600315:C:G	rs143003579	C	G	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr14	91946877	91946878	chr14:91946878:A:C	rs117567118	A	C	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr14	91996152	91996153	chr14:91996153:T:C	rs10083510	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	9.244243164055115	2.3367779271311115	CCCATTAAATAGTAATTC
chr14	92252433	92252434	chr14:92252434:G:A	rs559221386	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr14	92443004	92443005	chr14:92443005:A:G	rs41304353	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.3942532799100595	2.8061590608869094	GTCATTGATACCCCATTA
chr14	92570876	92570877	chr14:92570877:T:C	rs76093027	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.2684650589787685	2.6803708399556188	GCAATCTGTAACCAATCA
chr14	92678626	92678627	chr14:92678627:G:C	rs9944166	G	C	C	Msx3.mouse_homeodomain_1	0	1	+	5.965615941913315	5.598264432038702	GCAATCACACACCCATTC
chr14	92890443	92890444	chr14:92890444:C:A	rs56137244	C	A	C	Msx3.mouse_homeodomain_1	1	1	+	8.037015266506337	5.336725889565874	GCCATTGGGGGGTAATTA
chr14	93045486	93045487	chr14:93045487:C:G	rs115429496	C	G	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr14	93085105	93085106	chr14:93085106:G:A	rs117067814	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr14	93234149	93234150	chr14:93234150:C:G	rs143797349	C	G	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr14	93369585	93369586	chr14:93369586:A:G	rs142289502	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	9.058319343433993	8.166230311362746	CTACTAATATGCCAATTA
chr14	93817091	93817092	chr14:93817092:G:A	rs7147221	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr14	93941532	93941533	chr14:93941533:C:T	rs73337612	C	T	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr14	93946764	93946765	chr14:93946765:T:A	rs1884208	T	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr14	94089471	94089472	chr14:94089472:A:G	rs117299001	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	12.008776821022543	5.1013115840985375	CTCATTATATACTAATTA
chr14	94397775	94397776	chr14:94397776:A:C	rs111987154	A	C	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr14	94622894	94622895	chr14:94622895:C:A	rs17091162	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	7.928677119370046	5.4173683596012205	ATGATTATCTGGCAATTG
chr14	94896358	94896359	chr14:94896359:A:G	rs1341001	A	G	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr14	95275415	95275416	chr14:95275416:T:C	rs7150669	T	C	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr14	95453573	95453574	chr14:95453574:C:T	rs7151678	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr14	95513117	95513118	chr14:95513118:G:A	rs179153	G	A	A	Msx3.mouse_homeodomain_1	7	1	-	7.819079478675817	8.149020431391914	GTAGTTACTGGCTAATTA
chr14	95597884	95597885	chr14:95597885:C:G	rs118181441	C	G	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr14	96167654	96167655	chr14:96167655:G:A	rs372390288	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr14	96682011	96682012	chr14:96682012:G:A	rs139792434	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr14	96847832	96847833	chr14:96847833:T:C	rs28441425	T	C	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr14	97017038	97017039	chr14:97017039:G:A	rs10143399	G	A	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr14	98564301	98564302	chr14:98564302:G:A	rs17097313	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr14	98666071	98666072	chr14:98666072:G:T	rs12586193	G	T	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr14	98839187	98839188	chr14:98839188:C:A	rs7155154	C	A	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr14	99040089	99040090	chr14:99040090:G:A	rs8019310	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr14	99181048	99181049	chr14:99181049:C:T	rs11621953	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr14	99524683	99524684	chr14:99524684:T:A	rs75891784	T	A	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr14	99549190	99549191	chr14:99549191:T:C	rs11160525	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr14	99757727	99757728	chr14:99757728:G:A	chr14:99757728:G:A	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr14	100164974	100164975	chr14:100164975:T:C	rs55940508	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr14	100600016	100600017	chr14:100600017:G:T	rs1190857	G	T	T	Msx3.mouse_homeodomain_1	1	1	-	7.5633485116479315	4.863059134707468	CCAAGCAAGACCCAATTA
chr14	100665139	100665140	chr14:100665140:A:G	rs17660210	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	7.852169989823696	5.7948958109175	CCAATTAGGAAACAACTA
chr14	100712377	100712378	chr14:100712378:C:G	rs72698720	C	G	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr14	100765729	100765730	chr14:100765730:T:C	rs56227773	T	C	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr14	101023019	101023020	chr14:101023020:C:T	rs34942859	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr14	101137052	101137053	chr14:101137053:T:C	rs7493865	T	C	t	Msx3.mouse_homeodomain_1	14	1	-	7.545433321099707	2.9573391020765563	TCAATCAGTTATCAATCA
chr14	101218427	101218428	chr14:101218428:C:G	rs17100040	C	G	C	Msx3.mouse_homeodomain_1	8	1	-	7.297191013423627	7.3841735216362805	ATAATTATGAGCCACTTG
chr14	101932406	101932407	chr14:101932407:C:A	rs11160666	C	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr14	101932410	101932411	chr14:101932411:C:T	rs151312887	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr14	101932413	101932414	chr14:101932414:G:A	rs2474673	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr14	101932418	101932419	chr14:101932419:C:T	rs55875454	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr14	103248841	103248842	chr14:103248842:G:A	rs11626942	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr14	103362788	103362789	chr14:103362789:C:A	rs62006960	C	A	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr14	103427759	103427760	chr14:103427760:T:C	rs186248361	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr14	103633471	103633472	chr14:103633472:G:A	rs75986142	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr14	104210432	104210433	chr14:104210433:G:C	rs12895469	G	C	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr14	104210479	104210480	chr14:104210480:C:T	rs12895202	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr14	104383671	104383672	chr14:104383672:T:A	rs113352604	T	A	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr14	104528953	104528954	chr14:104528954:G:A	rs59432264	G	A	g	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr14	104661116	104661117	chr14:104661117:A:G	rs56138896	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.105928143151502	3.517833924128351	CAAATGAGACTCCAATTA
chr14	104766437	104766438	chr14:104766438:T:C	rs28372998	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	8.273579094361551	8.391282742886549	TTAATTAATGGGCAATGA
chr14	104918686	104918687	chr14:104918687:G:A	rs35769378	G	A	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr14	105067671	105067672	chr14:105067672:G:A	rs4288933	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr14	105968690	105968691	chr14:105968691:C:G	rs35755487	C	G	.	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr14	106343243	106343244	chr14:106343244:G:A	rs1261789381	G	A	a	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr14	106662085	106662086	chr14:106662086:A:T	rs1858685	A	T	t	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr14	106662150	106662151	chr14:106662151:G:A	rs56658355	G	A	a	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr15	20237924	20237925	chr15:20237925:A:G	rs7165822	A	G	.	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr15	20237932	20237933	chr15:20237933:T:C	rs11631686	T	C	.	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr15	20250745	20250746	chr15:20250746:T:A	rs2601511	T	A	.	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr15	20265853	20265854	chr15:20265854:C:T	rs13380055	C	T	c	Msx3.mouse_homeodomain_1	12	1	+	8.329013149894294	6.883890486327812	ACAAGCAATAACCAATTA
chr15	20359152	20359153	chr15:20359153:A:G	rs28701554	A	G	a	Msx3.mouse_homeodomain_1	16	1	+	7.716560904865825	6.527866056279556	CCAATTACAATGCAGTAA
chr15	20667588	20667589	chr15:20667589:G:C	rs7496816	G	C	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr15	22739974	22739975	chr15:22739975:A:C	rs28379064	A	C	a	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr15	23568107	23568108	chr15:23568108:A:T	rs562549667	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	10.058724962490952	3.979811543133096	TTCATTAGATGCTAATTA
chr15	23868853	23868854	chr15:23868854:C:T	chr15:23868854:C:T	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	9.440435468393929	8.243484443218517	AAAATTAAACAGCAATAA
chr15	25428155	25428156	chr15:25428156:C:T	rs11161175	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.925351967049611	8.077509096168928	ACACTTAAAAAATCATTA
chr15	25761794	25761795	chr15:25761795:T:C	rs6576455	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	8.736083567355777	9.844593122520521	AAAATCAAAAGCAAATTA
chr15	25931849	25931850	chr15:25931850:G:A	rs116674923	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr15	25984547	25984548	chr15:25984548:G:A	rs881920	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr15	26178138	26178139	chr15:26178139:C:A	rs7166957	C	A	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr15	26242317	26242318	chr15:26242318:G:A	rs2715573	G	A	A	Msx3.mouse_homeodomain_1	10	1	-	6.207519683056188	7.251491982929902	CAAATTAGTGCCCGATTG
chr15	26891419	26891420	chr15:26891420:A:G	rs145342878	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr15	26901514	26901515	chr15:26901515:A:C	rs12910133	A	C	a	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr15	27072037	27072038	chr15:27072038:G:C	rs10519571	G	C	G	Msx3.mouse_homeodomain_1	1	1	-	7.710182725132689	4.4458338681043745	GCAATAGCTAACCAATCA
chr15	27082559	27082560	chr15:27082560:G:T	rs59428939	G	T	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr15	27210507	27210508	chr15:27210508:G:A	rs12907311	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr15	27413416	27413417	chr15:27413417:T:C	rs72705750	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	7.729838044855605	7.399897092139507	ACAATTATATGCAGATTG
chr15	27825134	27825135	chr15:27825135:A:G	rs931663	A	G	G	Msx3.mouse_homeodomain_1	10	1	-	11.087682195472066	10.043709895598354	GCAATCACTTTTCAATTA
chr15	29025457	29025458	chr15:29025458:A:G	rs11070232	A	G	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr15	29159060	29159061	chr15:29159061:G:C	rs12898386	G	C	G	Msx3.mouse_homeodomain_1	17	1	-	7.134474359237645	9.15317134318095	CCAATAACCCACCAATTC
chr15	29470809	29470810	chr15:29470810:T:C	rs8024060	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr15	29918566	29918567	chr15:29918567:A:G	rs7495809	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr15	29990315	29990316	chr15:29990316:C:T	rs7164994	C	T	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr15	30959577	30959578	chr15:30959578:T:C	rs2949574	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	7.519247722222096	5.077170495290538	GTAATTATTGTCTGATCA
chr15	31016174	31016175	chr15:31016175:T:C	rs16956455	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr15	31320265	31320266	chr15:31320266:G:T	rs74010609	G	T	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr15	32828498	32828499	chr15:32828499:T:C	rs68123931	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr15	32862385	32862386	chr15:32862386:G:A	rs77841413	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr15	32943846	32943847	chr15:32943847:C:G	rs80110304	C	G	C	Msx3.mouse_homeodomain_1	7	1	-	9.66522980084535	9.385158791464185	CCAATTAGATGTCTATTA
chr15	33015070	33015071	chr15:33015071:T:C	rs56094393	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr15	33083924	33083925	chr15:33083925:C:T	rs345794	C	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr15	33101308	33101309	chr15:33101309:T:C	rs7177958	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr15	33126684	33126685	chr15:33126685:G:A	rs894227343	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr15	33126734	33126735	chr15:33126735:A:G	chr15:33126735:A:G	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr15	33192135	33192136	chr15:33192136:C:G	rs4780091	C	G	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr15	33201425	33201426	chr15:33201426:T:G	rs4779611	T	G	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr15	33283666	33283667	chr15:33283667:A:C	rs6495008	A	C	A	Msx3.mouse_homeodomain_1	0	1	+	10.370131870723153	11.111289916013288	ACAATTATATTCAAATTG
chr15	33323918	33323919	chr15:33323919:A:G	rs16969320	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr15	33512708	33512709	chr15:33512709:T:G	rs2596211	T	G	G	Msx3.mouse_homeodomain_1	2	1	-	7.962220362268648	5.579632920797923	ACAATTATGACAAGATTA
chr15	33647540	33647541	chr15:33647541:C:T	rs2132206	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr15	33810312	33810313	chr15:33810313:C:T	rs16958081	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	6.268953912950486	7.275503245795693	CGAATTAGGTAGCCATCA
chr15	33860885	33860886	chr15:33860886:A:G	rs191934899	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	7.053619952828398	8.498742616394882	ACACTTAGCTCCTGATTA
chr15	34002455	34002456	chr15:34002456:C:A	rs602807	C	A	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr15	34241778	34241779	chr15:34241779:T:C	rs10519916	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.786122717790072	4.198028498766921	GAAATGAAAAAGAAATTA
chr15	34368141	34368142	chr15:34368142:T:A	rs59247158	T	A	T	Msx3.mouse_homeodomain_1	9	1	+	5.779573245152168	6.193714517025249	CCCATTGCATGGCAGTTA
chr15	34577251	34577252	chr15:34577252:C:G	rs62004905	C	G	c	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr15	34621930	34621931	chr15:34621931:T:C	rs74921031	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr15	34754614	34754615	chr15:34754615:T:A	rs2277558	T	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr15	34798936	34798937	chr15:34798937:G:C	rs475786	G	C	G	Msx3.mouse_homeodomain_1	12	1	-	9.584325415946726	6.084942397330567	ACAATTTAGTCACAATTA
chr15	34813626	34813627	chr15:34813627:A:G	rs111439305	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr15	34813636	34813637	chr15:34813637:T:C	rs79563020	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr15	34914728	34914729	chr15:34914729:G:A	rs74426365	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	6.964239743716393	5.51911708014991	TTACTTAAAGGCCGATTG
chr15	35394233	35394234	chr15:35394234:T:C	rs534908028	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	8.029987187436102	8.877830058316789	CTAATTAAAGACTATTTG
chr15	35522001	35522002	chr15:35522002:G:C	rs74842466	G	C	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr15	35737236	35737237	chr15:35737237:A:G	rs2683115	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr15	35852947	35852948	chr15:35852948:T:C	rs147735639	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	12.896125717294272	11.955581724908129	GTAATTAAAAAAGAATTA
chr15	35852957	35852958	chr15:35852958:A:G	rs2683102	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr15	36469501	36469502	chr15:36469502:G:T	rs2444740	G	T	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr15	36580167	36580168	chr15:36580168:T:C	rs6495842	T	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr15	36608514	36608515	chr15:36608515:T:G	rs11856429	T	G	G	Msx3.mouse_homeodomain_1	10	1	-	8.88450091639966	7.346957092550823	AAAATGACAAACCAATTA
chr15	36798831	36798832	chr15:36798832:G:T	rs77483951	G	T	T	Msx3.mouse_homeodomain_1	10	1	-	7.782617618317693	9.32016144216653	GAAATTAGAACCACATTA
chr15	36888027	36888028	chr15:36888028:G:A	rs1450414	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr15	37104758	37104759	chr15:37104759:T:C	rs944819957	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr15	37203399	37203400	chr15:37203400:A:G	rs999736	A	G	G	Msx3.mouse_homeodomain_1	10	1	+	8.212326273107209	7.135735102170734	CCCATTAGATATTCATTA
chr15	38593715	38593716	chr15:38593716:T:C	rs7177096	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	7.869070886760562	5.426993659829004	GTACTTACTGACCACTTA
chr15	38793579	38793580	chr15:38793580:C:T	rs2929686	C	T	T	Msx3.mouse_homeodomain_1	0	1	-	9.30922692105612	8.200717365891375	GCAATTTATGAGCACTTA
chr15	38868229	38868230	chr15:38868230:C:A	rs61480073	C	A	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr15	38956204	38956205	chr15:38956205:G:A	rs4924313	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	8.120165681857657	6.923214656682245	GCTATTAAATAGCTATTG
chr15	38996399	38996400	chr15:38996400:A:C	rs11070167	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	6.4837477310679015	0.8257584791182031	GCAATGAGTAACCCATTG
chr15	39252310	39252311	chr15:39252311:C:T	rs11853050	C	T	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr15	39360616	39360617	chr15:39360617:T:C	rs79347560	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr15	39578042	39578043	chr15:39578043:G:C	rs2618167	G	C	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr15	39585268	39585269	chr15:39585269:T:A	rs57178709	T	A	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr15	39623206	39623207	chr15:39623207:G:A	rs16969410	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr15	39942611	39942612	chr15:39942612:T:C	rs920141	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr15	39942613	39942614	chr15:39942614:G:C	rs920142	G	C	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr15	39960363	39960364	chr15:39960364:A:G	rs75827339	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr15	39968506	39968507	chr15:39968507:T:C	rs12900686	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr15	40152343	40152344	chr15:40152344:A:C	rs11636204	A	C	C	Msx3.mouse_homeodomain_1	15	1	-	8.867038755395146	1.9595735184711396	ATAATTAAACACAAATAA
chr15	40577450	40577451	chr15:40577451:A:G	rs62019876	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	9.951025182725306	3.043559945801301	CCAATGAATAAATAATTA
chr15	41948582	41948583	chr15:41948583:T:C	rs72726025	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr15	43246312	43246313	chr15:43246313:G:A	rs7162827	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	9.010082485640805	8.186491741380625	CAAATCAGGATCTAATTA
chr15	44081266	44081267	chr15:44081267:A:C	rs144028160	A	C	A	Msx3.mouse_homeodomain_1	1	1	-	9.09713656751428	6.680630581366652	CTAATCAGTAGGAAATTA
chr15	44192222	44192223	chr15:44192223:T:G	rs553785790	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr15	44211916	44211917	chr15:44211917:A:C	rs2615258	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	9.036706937546693	6.152513881069318	GCACTAATAAAATAATTA
chr15	44246848	44246849	chr15:44246849:A:T	rs2950622	A	T	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr15	45224920	45224921	chr15:45224921:A:T	rs2433227	A	T	T	Msx3.mouse_homeodomain_1	0	1	-	9.15924333788837	9.241676036858415	TCAATTGTAAAGCAGTTA
chr15	45339669	45339670	chr15:45339670:A:G	rs1153862	A	G	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr15	45458435	45458436	chr15:45458436:T:G	chr15:45458436:T:G	T	G	T	Msx3.mouse_homeodomain_1	6	1	-	7.68531681279424	3.4403010063220814	GCTATTACCTGCCAATAA
chr15	45638406	45638407	chr15:45638407:C:T	rs143088641	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr15	45947503	45947504	chr15:45947504:T:G	rs1578940	T	G	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr15	46232173	46232174	chr15:46232174:G:A	rs28610582	G	A	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr15	46903026	46903027	chr15:46903027:C:T	rs11070553	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr15	47571494	47571495	chr15:47571495:A:C	rs1435761	A	C	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr15	47575161	47575162	chr15:47575162:C:T	rs12050798	C	T	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr15	47780002	47780003	chr15:47780003:T:A	rs4774505	T	A	T	Msx3.mouse_homeodomain_1	7	1	-	10.065591707269997	9.005646113281339	GCCATTAAATGCCAATTC
chr15	47861441	47861442	chr15:47861442:T:C	rs16952918	T	C	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr15	47870980	47870981	chr15:47870981:A:C	rs149210482	A	C	C	Msx3.mouse_homeodomain_1	6	1	+	7.771336817656002	3.52632101118384	TTACTTAAGTAGTCATTA
chr15	48391037	48391038	chr15:48391038:G:A	rs8025596	G	A	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr15	48414255	48414256	chr15:48414256:T:C	rs73390287	T	C	C	Msx3.mouse_homeodomain_1	6	1	-	6.618571248003027	4.17649402107147	GCAATCAGACACAAATTC
chr15	48564563	48564564	chr15:48564564:A:G	rs35724587	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	8.854830977542207	7.914286985156061	TCTATTAATATAAAATTA
chr15	48698668	48698669	chr15:48698669:A:G	rs7174374	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.707528716988811	5.11943449796566	CTGATTAACAAACCATTA
chr15	48771231	48771232	chr15:48771232:T:G	rs10519189	T	G	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr15	49370685	49370686	chr15:49370686:A:G	rs2043036	A	G	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr15	49372471	49372472	chr15:49372472:C:T	rs11633282	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	8.528808532386378	8.411104883861384	GCAATGACCCTCTAATTA
chr15	49464571	49464572	chr15:49464572:T:C	rs11070694	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr15	49468348	49468349	chr15:49468349:A:G	rs2413958	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	7.006492324836336	4.489623696899258	CTAATTTGAGGGGAATTA
chr15	49831379	49831380	chr15:49831380:T:C	rs12912869	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	7.592239502241214	1.4936938223720797	CCAATCAGAAACTGCTTA
chr15	49895486	49895487	chr15:49895487:T:C	rs73396957	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	9.16722540090707	8.27513636883582	GCAATTAACTAGAGATTT
chr15	50124398	50124399	chr15:50124399:A:G	rs11638799	A	G	G	Msx3.mouse_homeodomain_1	3	1	+	8.786664368014254	4.817233391645374	ACAATTAAGTTTTACTTA
chr15	50124409	50124410	chr15:50124410:C:G	rs11638841	C	G	G	Msx3.mouse_homeodomain_1	14	1	+	8.786664368014254	7.75954918724529	ACAATTAAGTTTTACTTA
chr15	50331386	50331387	chr15:50331387:G:A	rs7163457	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr15	50668940	50668941	chr15:50668941:G:A	rs8029941	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr15	50945977	50945978	chr15:50945978:T:C	rs7162209	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr15	51775457	51775458	chr15:51775458:A:G	rs12903781	A	G	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr15	52440456	52440457	chr15:52440457:G:A	rs538739765	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr15	52486095	52486096	chr15:52486096:A:T	rs17651545	A	T	A	Msx3.mouse_homeodomain_1	7	1	+	7.570572166376499	6.510626572387837	CAAATCAAATTCCAATTC
chr15	52568168	52568169	chr15:52568169:A:T	rs77102195	A	T	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr15	52780536	52780537	chr15:52780537:C:T	rs79402245	C	T	C	Msx3.mouse_homeodomain_1	14	1	-	11.504244685242362	16.092338904265514	GTAATTAAGATGCAGTTA
chr15	52785654	52785655	chr15:52785655:C:T	rs2440319	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr15	52833586	52833587	chr15:52833587:A:G	rs2120440	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr15	53037574	53037575	chr15:53037575:C:T	rs4142455	C	T	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr15	53362938	53362939	chr15:53362939:T:G	rs12439342	T	G	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr15	53362941	53362942	chr15:53362942:C:T	rs79869069	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr15	53588319	53588320	chr15:53588320:A:G	rs11070992	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr15	53611849	53611850	chr15:53611850:T:G	rs117235942	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	9.18229562088429	4.59543903975778	CCAATTAACTTGTGCTTA
chr15	53977149	53977150	chr15:53977150:C:T	rs75934793	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr15	54128823	54128824	chr15:54128824:T:A	rs76923486	T	A	T	Msx3.mouse_homeodomain_1	13	1	-	11.179353171189623	6.996944708349659	GCAATTAGGTACTAATTT
chr15	54321737	54321738	chr15:54321738:A:C	rs12917191	A	C	A	Msx3.mouse_homeodomain_1	8	1	+	10.82331624767102	9.903749423038466	CAAATTACACTCTAATTA
chr15	55019364	55019365	chr15:55019365:G:T	rs1690366	G	T	G	Msx3.mouse_homeodomain_1	10	1	+	8.924296718898464	9.507316365859818	CCAATTAAATGCCTCTTA
chr15	55217877	55217878	chr15:55217878:G:C	rs1865473	G	C	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr15	55567596	55567597	chr15:55567597:A:G	rs11636163	A	G	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr15	55567599	55567600	chr15:55567600:C:G	rs115432440	C	G	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr15	55703939	55703940	chr15:55703940:G:A	rs74365454	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr15	55984182	55984183	chr15:55984183:T:C	rs72734396	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.790941818630873	4.202847599607723	AAAATTAACTTGTAATTG
chr15	55984189	55984190	chr15:55984190:T:A	rs72734397	T	A	T	Msx3.mouse_homeodomain_1	7	1	-	8.790941818630873	7.730996224642216	AAAATTAACTTGTAATTG
chr15	56059363	56059364	chr15:56059364:G:A	rs1983196	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.047652480963318	7.602529817396836	ATAATTAAAAGCCCCTTA
chr15	56093669	56093670	chr15:56093670:A:G	rs33984059	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr15	56254398	56254399	chr15:56254399:A:G	rs12595690	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr15	56254408	56254409	chr15:56254409:C:G	rs76185778	C	G	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr15	57166585	57166586	chr15:57166586:C:T	rs3794617	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	9.46454821085609	10.574363748179685	ACACTTAGTTACAAATTA
chr15	57208222	57208223	chr15:57208223:C:T	rs11856055	C	T	c	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr15	57395695	57395696	chr15:57395696:G:T	rs1706341	G	T	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr15	57421034	57421035	chr15:57421035:T:A	rs11071316	T	A	T	Msx3.mouse_homeodomain_1	5	1	+	7.848631557607303	5.027229510450923	GTAATTAGGGTTAGATTA
chr15	57570652	57570653	chr15:57570653:T:C	rs12904222	T	C	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr15	57570659	57570660	chr15:57570660:G:C	rs12903329	G	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr15	57692802	57692803	chr15:57692803:T:C	rs188154995	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	9.889486828624678	10.007190477149676	ATAATTAGTAGGCAATTT
chr15	57861259	57861260	chr15:57861260:T:C	rs2414524	T	C	t	Msx3.mouse_homeodomain_1	3	1	-	6.698363462842667	2.7289324864737896	GCCATGAAATACCAGTTA
chr15	57861264	57861265	chr15:57861265:T:C	rs78170968	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr15	57903919	57903920	chr15:57903920:A:T	rs4143222	A	T	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr15	58147405	58147406	chr15:58147406:G:A	rs73426145	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr15	58187895	58187896	chr15:58187896:C:T	rs4775020	C	T	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr15	58426140	58426141	chr15:58426141:C:T	rs7163280	C	T	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr15	59247322	59247323	chr15:59247323:G:A	rs1565017	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	7.434345436576408	6.325835881411665	GCTATTACATCTCCATTA
chr15	59269412	59269413	chr15:59269413:A:T	rs12443291	A	T	T	Msx3.mouse_homeodomain_1	7	1	+	6.965646236197939	5.905700642209281	TCAATTAACTGCCAGTTT
chr15	59364600	59364601	chr15:59364601:C:T	rs11639217	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	7.429916251571499	6.321406696406753	GTAATTATGGGGCAAATA
chr15	60427298	60427299	chr15:60427299:A:C	rs75954380	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	8.078796925812107	1.1713316888881002	GTCATTATCTTCTCATTA
chr15	60605604	60605605	chr15:60605605:C:T	rs75756622	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr15	60990671	60990672	chr15:60990672:C:A	rs60804652	C	A	C	Msx3.mouse_homeodomain_1	13	1	+	8.241804614174368	11.125997670651744	ACAATTACAAAGTCATTT
chr15	61038538	61038539	chr15:61038539:C:T	rs75700438	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr15	61146564	61146565	chr15:61146565:G:A	rs72739558	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr15	61318512	61318513	chr15:61318513:G:A	rs6494256	G	A	A	Msx3.mouse_homeodomain_1	1	1	-	8.855514713828377	8.00767184294769	ACAGTCAATAGGCAATTA
chr15	61412227	61412228	chr15:61412228:G:A	rs535898559	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	12.671386085461819	11.823543214581132	GCACTTATGTTCCAATTA
chr15	61412241	61412242	chr15:61412242:G:A	rs4270116	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr15	61479768	61479769	chr15:61479769:G:A	rs34601722	G	A	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr15	61501091	61501092	chr15:61501092:C:T	rs57273960	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr15	61856845	61856846	chr15:61856846:T:C	rs1052306	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	6.758892569219491	2.7894615928506155	GACAGTAAAGAGCAATTA
chr15	62099467	62099468	chr15:62099468:C:T	rs145819125	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr15	62099472	62099473	chr15:62099473:G:A	rs7164143	G	A	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr15	62099493	62099494	chr15:62099494:G:T	chr15:62099494:G:T	G	T	G	Msx3.mouse_homeodomain_1	10	1	+	6.392167138206779	6.975186785168133	GCAATAGGTAGGCACTTA
chr15	62121542	62121543	chr15:62121543:A:G	rs920177	A	G	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr15	62444661	62444662	chr15:62444662:T:C	chr15:62444662:T:C	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr15	62665913	62665914	chr15:62665914:C:T	rs6494343	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr15	62770840	62770841	chr15:62770841:G:C	rs141286374	G	C	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr15	62863108	62863109	chr15:62863109:G:T	rs619306	G	T	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr15	63065088	63065089	chr15:63065089:T:G	rs11636549	T	G	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr15	63191090	63191091	chr15:63191091:G:A	rs2652817	G	A	G	Msx3.mouse_homeodomain_1	8	1	-	6.774683617475037	6.656979968950041	TTAATTAACCTGCAACTA
chr15	63223746	63223747	chr15:63223747:A:G	rs11632192	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr15	63232612	63232613	chr15:63232613:G:A	rs146122405	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.55516895099234	8.110046287425856	CAAATTAAATGGCATTTA
chr15	63244075	63244076	chr15:63244076:T:A	rs35703701	T	A	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr15	63249246	63249247	chr15:63249247:A:C	rs12901035	A	C	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr15	63764455	63764456	chr15:63764456:C:T	rs117856030	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr15	63832685	63832686	chr15:63832686:G:A	rs8042418	G	A	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr15	64163196	64163197	chr15:64163197:G:C	rs549694463	G	C	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr15	64163211	64163212	chr15:64163212:G:A	rs184062676	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	6.688622554546743	5.243499890980261	CCAATGAGGGAGCAATAA
chr15	64885026	64885027	chr15:64885027:T:A	rs1719266	T	A	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr15	64892292	64892293	chr15:64892293:C:A	rs1719273	C	A	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr15	65078496	65078497	chr15:65078497:C:T	rs2946643	C	T	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr15	65576153	65576154	chr15:65576154:T:C	rs541812485	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	10.307118317785491	8.249844138879293	ACAATTTAGAACAAATTA
chr15	65885978	65885979	chr15:65885979:C:T	rs75317775	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	8.006571921935915	6.898062366771172	GAGATAATGTACCAATTA
chr15	65944690	65944691	chr15:65944691:A:G	rs75765071	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr15	66171963	66171964	chr15:66171964:C:T	rs12914469	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr15	66370282	66370283	chr15:66370283:T:C	rs1329435909	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr15	66766920	66766921	chr15:66766921:A:G	rs4390543	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	8.684908713776405	6.242831486844849	GCAATAAAAGACCAAATA
chr15	66801316	66801317	chr15:66801317:C:T	rs11071921	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr15	66858858	66858859	chr15:66858859:C:T	rs77248314	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	6.8767163562235405	5.431593692657059	CCCATTCTTTAGCGATTA
chr15	66947879	66947880	chr15:66947880:C:A	rs8036050	C	A	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr15	67038667	67038668	chr15:67038668:T:C	rs6494623	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	8.985096698678532	5.860147545084678	CAAATGAATTTGCAATTA
chr15	67098419	67098420	chr15:67098420:G:A	rs147298653	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr15	67174804	67174805	chr15:67174805:G:T	rs12912010	G	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr15	67325062	67325063	chr15:67325063:A:C	rs7178975	A	C	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr15	67520583	67520584	chr15:67520584:A:G	rs74020202	A	G	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr15	67762049	67762050	chr15:67762050:G:A	rs884202	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr15	67781745	67781746	chr15:67781746:G:A	rs4261478	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	7.930778943969597	6.485656280403114	ACAATTAAGAGTCAATCG
chr15	67822328	67822329	chr15:67822329:T:C	rs75232474	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr15	67884333	67884334	chr15:67884334:G:A	rs79350616	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr15	67884380	67884381	chr15:67884381:A:G	rs62014300	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr15	67884387	67884388	chr15:67884388:C:T	rs116930576	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr15	67918907	67918908	chr15:67918908:T:C	rs452164	T	C	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr15	67925223	67925224	chr15:67925224:T:C	rs338372	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	9.415037977392485	8.474493985006339	CAAATTACAAAACAATTT
chr15	67999732	67999733	chr15:67999733:C:G	rs28703829	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	8.257767291113424	4.993418434085109	TCAATTGAACTTCAATCA
chr15	68126716	68126717	chr15:68126717:G:A	rs186047487	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr15	68389969	68389970	chr15:68389970:G:T	rs11638575	G	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr15	68707503	68707504	chr15:68707504:G:T	rs144097837	G	T	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr15	68749271	68749272	chr15:68749272:C:T	rs28533330	C	T	T	Msx3.mouse_homeodomain_1	3	1	+	8.01645992399801	5.769283948382818	GCACCTAAAAAGTAATTA
chr15	69360914	69360915	chr15:69360915:A:G	rs12913187	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr15	69751887	69751888	chr15:69751888:G:A	rs11636401	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	11.8712205882419	10.160990169258191	CCACTTACAGGCCAATTA
chr15	69917975	69917976	chr15:69917976:T:C	rs35409591	T	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr15	70219590	70219591	chr15:70219591:C:T	rs11630787	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	6.0510026668435755	8.10827684574977	GTAATCACCCACCGCTTA
chr15	70267367	70267368	chr15:70267368:G:C	rs2668608	G	C	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr15	70323906	70323907	chr15:70323907:A:G	rs1212420971	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr15	70335179	70335180	chr15:70335180:T:C	rs8024707	T	C	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr15	70348238	70348239	chr15:70348239:T:C	rs115965625	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr15	70475038	70475039	chr15:70475039:T:G	chr15:70475039:T:G	T	G	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr15	70527218	70527219	chr15:70527219:A:G	chr15:70527219:A:G	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.708754683062768	1.8012894461387643	TTACTCATAAACTAATTA
chr15	70535011	70535012	chr15:70535012:G:T	rs17699949	G	T	G	Msx3.mouse_homeodomain_1	8	1	+	7.505125006855672	7.474403866543331	ACAGTGAAGATCCAATTA
chr15	70741673	70741674	chr15:70741674:T:C	rs16954772	T	C	c	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr15	71251284	71251285	chr15:71251285:C:T	rs112186973	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr15	71281774	71281775	chr15:71281775:C:T	rs7182011	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.269482005845045	7.421639134964361	GCACTTGTTCAGTAATTA
chr15	71281795	71281796	chr15:71281796:G:T	rs7182305	G	T	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr15	71281808	71281809	chr15:71281809:C:T	rs72759669	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr15	71440869	71440870	chr15:71440870:C:T	rs559768952	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr15	71449755	71449756	chr15:71449756:G:A	rs60468286	G	A	g	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr15	71565537	71565538	chr15:71565538:T:A	rs8026019	T	A	A	Msx3.mouse_homeodomain_1	10	1	-	10.86885468431419	10.37528316033907	GCAATTAGCAACTTATTA
chr15	72232158	72232159	chr15:72232159:A:C	rs3743229	A	C	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr15	72685858	72685859	chr15:72685859:A:G	rs539085140	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr15	72685860	72685861	chr15:72685861:G:A	rs7178130	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr15	72685861	72685862	chr15:72685862:G:A	rs143267235	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr15	72790252	72790253	chr15:72790253:A:C	rs4777543	A	C	A	Msx3.mouse_homeodomain_1	17	1	+	6.602762791521893	2.0159062103953844	GTAATCACCACTCAATCA
chr15	72873380	72873381	chr15:72873381:G:T	rs10083634	G	T	T	Msx3.mouse_homeodomain_1	12	1	-	6.9511552355390895	4.439846475770263	CCGATTACCACACACTTA
chr15	73050439	73050440	chr15:73050440:T:C	rs13379875	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr15	73146506	73146507	chr15:73146507:T:G	rs1564347	T	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr15	73920610	73920611	chr15:73920611:T:C	rs56062631	T	C	T	Msx3.mouse_homeodomain_1	11	1	-	8.09519332101906	9.292144346194469	ACAATCAAAAGATAATCA
chr15	74274683	74274684	chr15:74274684:T:C	rs2959019	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr15	74843626	74843627	chr15:74843627:T:G	chr15:74843627:T:G	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	7.977403316089515	5.09321025961214	ACAGTTAAGATGCAATAA
chr15	75123620	75123621	chr15:75123621:A:G	rs2029519	A	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr15	76006402	76006403	chr15:76006403:A:G	rs11072567	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	11.735106416490535	7.147012197467382	ATAATTGGAAAACAATTA
chr15	76010830	76010831	chr15:76010831:T:C	rs16967774	T	C	t	Msx3.mouse_homeodomain_1	14	1	-	7.1416423661514985	2.5535481471283488	CTGACTATAATCCAATTA
chr15	76199995	76199996	chr15:76199996:T:C	rs79495512	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr15	76200000	76200001	chr15:76200001:C:T	rs79390188	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr15	76824294	76824295	chr15:76824295:C:T	rs78822715	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr15	77449297	77449298	chr15:77449298:G:A	rs1565756	G	A	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr15	77720275	77720276	chr15:77720276:C:T	rs11855853	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr15	77932500	77932501	chr15:77932501:T:C	rs28705941	T	C	t	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr15	78155681	78155682	chr15:78155682:T:C	rs3825848	T	C	.	Msx3.mouse_homeodomain_1	5	1	+	7.178308911078131	4.785323168567631	TAGATTGAGTGCCAATTA
chr15	78198629	78198630	chr15:78198630:G:A	rs11072740	G	A	g	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr15	78236195	78236196	chr15:78236196:C:T	rs12708524	C	T	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr15	78236218	78236219	chr15:78236219:A:C	rs11637289	A	C	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr15	78358340	78358341	chr15:78358341:T:C	rs10851905	T	C	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr15	78439667	78439668	chr15:78439668:A:G	rs72738715	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr15	78487167	78487168	chr15:78487168:T:A	rs36146269	T	A	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr15	78595095	78595096	chr15:78595096:T:G	rs12899226	T	G	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr15	78685975	78685976	chr15:78685976:T:G	rs61142483	T	G	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr15	78769997	78769998	chr15:78769998:C:G	rs1807006	C	G	-	Msx3.mouse_homeodomain_1	0	1	+	9.635500825121955	10.002852334996565	CTAATAATAAAAAAATTA
chr15	79190273	79190274	chr15:79190274:G:T	rs56940746	G	T	g	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr15	79190277	79190278	chr15:79190278:T:C	rs11072831	T	C	c	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr15	79528414	79528415	chr15:79528415:A:G	rs2184933	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.892142618760296	3.9227116423914192	GCAATTGCCAACAAATTT
chr15	79887504	79887505	chr15:79887505:C:T	rs8042012	C	T	T	Msx3.mouse_homeodomain_1	11	1	+	7.759581466488249	6.04935104750454	CAAGTAAAATTCCAATTA
chr15	79924335	79924336	chr15:79924336:C:G	rs150206275	C	G	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr15	80240812	80240813	chr15:80240813:T:C	rs71399405	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr15	80315806	80315807	chr15:80315807:A:T	rs3842947	A	T	T	Msx3.mouse_homeodomain_1	6	1	+	8.727176742134201	5.13489453502168	GTAATTACATCACATTTA
chr15	80456109	80456110	chr15:80456110:C:T	rs3848176	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr15	80536700	80536701	chr15:80536701:G:A	rs9989278	G	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr15	80699105	80699106	chr15:80699106:T:C	rs34994596	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr15	80710514	80710515	chr15:80710515:G:T	rs57783949	G	T	T	Msx3.mouse_homeodomain_1	11	1	+	6.815941711406933	5.191176833133485	CCAATTAGGATGCAAATG
chr15	81199119	81199120	chr15:81199120:G:A	rs66709425	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr15	81206629	81206630	chr15:81206630:T:C	rs1912124	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr15	81511401	81511402	chr15:81511402:A:G	rs117255840	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr15	81616939	81616940	chr15:81616940:G:A	rs78439087	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr15	81767152	81767153	chr15:81767153:C:T	rs11630155	C	T	T	Msx3.mouse_homeodomain_1	14	1	-	7.6681158695089975	12.25621008853215	GTAATTAATTAGCAGTAA
chr15	81863430	81863431	chr15:81863431:T:C	rs4778928	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr15	81968699	81968700	chr15:81968700:C:T	rs145001409	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr15	82032008	82032009	chr15:82032009:G:A	rs11853590	G	A	G	Msx3.mouse_homeodomain_1	10	1	-	7.290444425259751	8.334416725133462	CCAATGAATACACAATTG
chr15	82062650	82062651	chr15:82062651:C:G	rs10520566	C	G	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr15	82062652	82062653	chr15:82062653:C:G	rs11073031	C	G	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr15	82545212	82545213	chr15:82545213:C:T	rs1267659	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr15	82705190	82705191	chr15:82705191:C:G	rs12911134	C	G	C	Msx3.mouse_homeodomain_1	7	1	+	7.208436905008743	7.488507914389905	CCCCTTACCATCCCATTA
chr15	82803754	82803755	chr15:82803755:T:C	rs2379994	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr15	83765468	83765469	chr15:83765469:T:C	rs10083569	T	C	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr15	83802143	83802144	chr15:83802144:A:T	rs2401131	A	T	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr15	83814025	83814026	chr15:83814026:G:A	rs4530091	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr15	85094556	85094557	chr15:85094557:C:T	rs12905036	C	T	C	Msx3.mouse_homeodomain_1	6	1	-	7.806429192425308	10.248506419356865	ACCATTGCTAGACAATTA
chr15	85417431	85417432	chr15:85417432:T:C	rs117831074	T	C	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr15	85531139	85531140	chr15:85531140:A:G	rs7170758	A	G	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr15	86313479	86313480	chr15:86313480:A:G	rs977316	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr15	86313479	86313480	chr15:86313480:A:T	chr15:86313480:A:T	A	T	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr15	86619573	86619574	chr15:86619574:C:T	rs113985341	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr15	86619584	86619585	chr15:86619585:A:C	rs16977848	A	C	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr15	86712751	86712752	chr15:86712752:C:T	rs12439218	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	6.247105264350048	6.577046217066146	CCAATTCCGGACTCATTA
chr15	86853116	86853117	chr15:86853117:C:T	rs73445301	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr15	87471317	87471318	chr15:87471318:T:A	rs16940431	T	A	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr15	87477886	87477887	chr15:87477887:A:T	rs1370133121	A	T	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr15	87477910	87477911	chr15:87477911:G:A	rs939949913	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr15	88622433	88622434	chr15:88622434:G:A	rs73451724	G	A	G	Msx3.mouse_homeodomain_1	17	1	-	9.130257411921429	10.34632779716914	CTGATTAAAAGCCAATTC
chr15	89019399	89019400	chr15:89019400:T:A	rs72759039	T	A	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr15	89068325	89068326	chr15:89068326:A:G	rs11858077	A	G	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr15	89095208	89095209	chr15:89095209:G:A	rs293373	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr15	89143851	89143852	chr15:89143852:A:G	rs80146518	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr15	89143852	89143853	chr15:89143853:T:C	rs76622557	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr15	89526276	89526277	chr15:89526277:T:C	rs968136	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr15	89566166	89566167	chr15:89566167:C:T	rs16943343	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	8.816569186125793	7.106338767142083	ACAATTTCAATCCAATCA
chr15	89981032	89981033	chr15:89981033:C:T	rs116259185	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr15	90105293	90105294	chr15:90105294:C:T	rs11073900	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr15	90182502	90182503	chr15:90182503:A:G	rs73475863	A	G	a	Msx3.mouse_homeodomain_1	0	1	+	10.235155282165437	11.34366483733018	ACAATTAGAAACAACTTA
chr15	90253860	90253861	chr15:90253861:C:T	rs12914775	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr15	90523682	90523683	chr15:90523683:C:T	rs4244879	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr15	90678075	90678076	chr15:90678076:C:T	rs724925	C	T	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr15	90766093	90766094	chr15:90766094:G:A	rs3784781	G	A	.	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr15	90990585	90990586	chr15:90990586:A:G	rs8025699	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr15	91366092	91366093	chr15:91366093:C:T	rs5021331	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	6.758952747383618	7.868768284707211	ACAATCAGAAGCCAAATA
chr15	91890260	91890261	chr15:91890261:G:A	rs11074023	G	A	A	Msx3.mouse_homeodomain_1	9	1	-	8.886703759510937	9.778792791582184	ACAATTATACAGCAAATA
chr15	92146638	92146639	chr15:92146639:A:G	rs148474377	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr15	92211632	92211633	chr15:92211633:A:G	rs56101854	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr15	92316465	92316466	chr15:92316466:A:T	rs77928289	A	T	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr15	92715607	92715608	chr15:92715608:G:A	rs2278521	G	A	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr15	92819830	92819831	chr15:92819831:C:G	rs192788691	C	G	C	Msx3.mouse_homeodomain_1	14	1	+	8.752404811854387	7.725289631085425	GCAATAAACTACCGCTTA
chr15	92840509	92840510	chr15:92840510:T:A	rs6496994	T	A	a	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr15	92879610	92879611	chr15:92879611:T:C	rs111668475	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	9.533357368212325	6.408408214618471	AAAATTACAAAAAAATTA
chr15	92904832	92904833	chr15:92904833:A:G	rs77921577	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr15	92951747	92951748	chr15:92951748:A:G	rs7176652	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr15	93061860	93061861	chr15:93061861:C:A	rs2293597	C	A	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr15	93138427	93138428	chr15:93138428:C:G	rs10459711	C	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr15	93140195	93140196	chr15:93140196:C:T	rs35609347	C	T	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr15	93374953	93374954	chr15:93374954:A:G	rs8040084	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	6.88021219396486	-0.027253042959145546	CCAATTAGACGGTCATTT
chr15	93570405	93570406	chr15:93570406:G:A	rs16948232	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr15	93614249	93614250	chr15:93614250:C:A	rs17709494	C	A	C	Msx3.mouse_homeodomain_1	11	1	-	7.097567711043177	5.472802832769729	CCAATCTAATGGGAATTA
chr15	94130828	94130829	chr15:94130829:G:A	rs12917164	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	6.027480714320798	4.582358050754316	GCCATTATCAACCGAATA
chr15	94137574	94137575	chr15:94137575:A:G	rs1124381	A	G	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr15	94830143	94830144	chr15:94830144:G:T	rs11636030	G	T	G	Msx3.mouse_homeodomain_1	13	1	+	7.730191170293461	5.605056886359691	CCAATCAAAAGGTGATTT
chr15	94845937	94845938	chr15:94845938:T:A	rs75353360	T	A	T	Msx3.mouse_homeodomain_1	3	1	-	8.974345605694026	3.8469952655459334	GTGATCAAAAAAAAATTA
chr15	95590560	95590561	chr15:95590561:G:A	rs577898150	G	A	G	Msx3.mouse_homeodomain_1	14	1	-	8.953182056511203	8.187400743415836	GTAATAATAAAACACTTA
chr15	95669103	95669104	chr15:95669104:C:A	rs7173883	C	A	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr15	95844337	95844338	chr15:95844338:T:C	rs734399	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	7.593591212325513	6.653047219939366	GCTATTTATATGCAATTG
chr15	95872476	95872477	chr15:95872477:G:A	rs56356845	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr15	96120332	96120333	chr15:96120333:T:C	rs117444034	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr15	96500066	96500067	chr15:96500067:G:A	rs8036282	G	A	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr15	96648940	96648941	chr15:96648941:C:T	rs28477210	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	10.025011110340433	9.177168239459746	ACGATCAATAACTAATTA
chr15	97235402	97235403	chr15:97235403:C:T	rs928768853	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr15	97235651	97235652	chr15:97235652:A:C	rs7165046	A	C	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr15	97755220	97755221	chr15:97755221:A:C	rs1048650371	A	C	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr15	97798799	97798800	chr15:97798800:C:T	rs28403562	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	10.152237447645401	11.158786780490608	GTAATTACGTTTAAATTA
chr15	97909181	97909182	chr15:97909182:T:C	rs8031646	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr15	98080929	98080930	chr15:98080930:T:A	rs11247366	T	A	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr15	98139056	98139057	chr15:98139057:A:T	rs4965464	A	T	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr15	98139063	98139064	chr15:98139064:G:A	rs7166587	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr15	98160405	98160406	chr15:98160406:C:T	rs66470164	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr15	98178943	98178944	chr15:98178944:G:A	rs1552050	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr15	98304555	98304556	chr15:98304556:T:A	rs117168565	T	A	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr15	98304565	98304566	chr15:98304566:G:C	rs140310379	G	C	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr15	98658343	98658344	chr15:98658344:A:C	rs34038360	A	C	A	Msx3.mouse_homeodomain_1	14	1	+	8.52769718115216	4.966718142897973	CTCCTTAGCTGCCAATTA
chr15	98725917	98725918	chr15:98725918:G:A	rs4965431	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr15	98769624	98769625	chr15:98769625:A:G	rs2175795	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr15	98959297	98959298	chr15:98959298:C:T	rs1058696	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr15	99052197	99052198	chr15:99052198:A:G	rs74032167	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr15	99121541	99121542	chr15:99121542:C:T	rs58319155	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	12.804467797039468	14.861741975945662	TCAATTATCATCCGATTA
chr15	99305340	99305341	chr15:99305341:G:T	rs28555226	G	T	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr15	99505031	99505032	chr15:99505032:T:C	rs12591895	T	C	C	Msx3.mouse_homeodomain_1	10	1	+	10.291609337452883	9.247637037579167	GAAATTAGCTTGAAATTA
chr15	99516085	99516086	chr15:99516086:T:G	rs58486555	T	G	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr15	99613737	99613738	chr15:99613738:G:C	rs147821612	G	C	C	Msx3.mouse_homeodomain_1	3	1	-	7.77358135914092	6.684324747304942	GCACTTATCAGCTAATTT
chr15	99616930	99616931	chr15:99616931:C:T	rs4965260	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr15	100104348	100104349	chr15:100104349:T:C	rs12442513	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr15	100111616	100111617	chr15:100111617:C:T	rs12916305	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr15	100154944	100154945	chr15:100154945:G:A	rs8034605	G	A	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr15	100154980	100154981	chr15:100154981:G:A	rs78510225	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr15	100170662	100170663	chr15:100170663:T:C	rs78761609	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	6.962066292713273	5.8522507553896785	CTGATAGAAAACCAATTG
chr15	100196424	100196425	chr15:100196425:G:C	rs8031457	G	C	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr15	100230885	100230886	chr15:100230886:C:G	rs373921310	C	G	C	Msx3.mouse_homeodomain_1	12	1	+	9.947444041851885	6.4480610232357245	CCAATTAGGAAGCCATCA
chr15	100307915	100307916	chr15:100307916:G:C	rs7183334	G	C	G	Msx3.mouse_homeodomain_1	0	1	+	6.994494727242409	6.627143217367796	GCCCTAGACAAGCAATTA
chr15	100588882	100588883	chr15:100588883:A:G	rs2411840	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr15	100696270	100696271	chr15:100696271:T:C	rs8028239	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr15	101380594	101380595	chr15:101380595:C:G	rs12441731	C	G	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr15	101528025	101528026	chr15:101528026:G:A	rs114049675	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr15	101619185	101619186	chr15:101619186:G:A	rs115500155	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr15	101619189	101619190	chr15:101619190:G:C	rs113864079	G	C	G	Msx3.mouse_homeodomain_1	3	1	+	7.795341722025058	8.884598333861035	GCAGTTAGTGGGAAATTA
chr16	748573	748574	chr16:748574:G:T	rs116285241	G	T	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	748575	748576	chr16:748576:C:T	rs74002879	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr16	748621	748622	chr16:748622:A:G	rs4984923	A	G	a	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr16	907884	907885	chr16:907885:A:G	rs4984969	A	G	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr16	1019488	1019489	chr16:1019489:C:A	rs538773907	C	A	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr16	1470133	1470134	chr16:1470134:A:T	rs2745005	A	T	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	2010141	2010142	chr16:2010142:A:G	rs1001817883	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr16	2395478	2395479	chr16:2395479:T:G	rs6600203	T	G	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr16	2668215	2668216	chr16:2668216:T:C	rs11643554	T	C	t	Msx3.mouse_homeodomain_1	3	1	-	7.565893181569412	3.5964622052005337	CTCATAAGCAACAAATTA
chr16	2861318	2861319	chr16:2861319:T:C	rs7192880	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr16	2861356	2861357	chr16:2861357:G:A	rs7205847	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr16	3153259	3153260	chr16:3153260:T:A	rs2735523	T	A	t	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr16	3153291	3153292	chr16:3153292:A:G	rs224187	A	G	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr16	3236170	3236171	chr16:3236171:A:C	rs76643033	A	C	C	Msx3.mouse_homeodomain_1	14	1	-	8.284105703752783	8.022771836079187	GCAATTAAGATGTCTTTA
chr16	3688284	3688285	chr16:3688285:G:T	rs72778151	G	T	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr16	3690340	3690341	chr16:3690341:G:T	rs9923245	G	T	T	Msx3.mouse_homeodomain_1	7	1	+	8.204032311234144	8.25390225456908	TTAATTAGTTAGAAATCA
chr16	3978864	3978865	chr16:3978865:G:A	rs12923006	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr16	3978875	3978876	chr16:3978876:T:C	rs2531987	T	C	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr16	4787002	4787003	chr16:4787003:T:C	rs2880223	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	6.598693194337254	4.5414190154310585	GTACTTAGGAGCTACTTA
chr16	4826782	4826783	chr16:4826783:G:A	rs79940380	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	8.939244536680565	7.229014117696855	GAAATTAAATGCACATTA
chr16	4846297	4846298	chr16:4846298:A:G	rs73517031	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr16	4974528	4974529	chr16:4974529:C:T	rs11647250	C	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr16	5166716	5166717	chr16:5166717:G:C	rs871295	G	C	c	Msx3.mouse_homeodomain_1	11	1	+	5.9935257459906	6.078991286700863	CAAATTACCGAGCACTTG
chr16	5350048	5350049	chr16:5350049:G:A	rs117059192	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr16	5417208	5417209	chr16:5417209:C:T	rs483079	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr16	5449231	5449232	chr16:5449232:T:C	rs7189048	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	8.835055346077006	6.392978119145448	CCAATTACAGAGCAACTA
chr16	5633996	5633997	chr16:5633997:G:A	rs1860305	G	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr16	5633998	5633999	chr16:5633999:C:T	rs74004439	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr16	5791384	5791385	chr16:5791385:T:C	rs4786777	T	C	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr16	5791404	5791405	chr16:5791405:C:T	rs2164510	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	9.442010443684065	11.499284622590263	AGAATTAAAAAGCGATTG
chr16	6059846	6059847	chr16:6059847:G:C	rs7204228	G	C	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr16	6063692	6063693	chr16:6063693:A:G	rs6500745	A	G	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr16	6117494	6117495	chr16:6117495:C:T	rs749467	C	T	C	Msx3.mouse_homeodomain_1	13	1	+	7.428385470725934	6.130170064363344	GCCATTCAGATGCCATTA
chr16	6345366	6345367	chr16:6345367:A:C	rs1420033	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	11.00958975766791	6.764573951195749	TTAATTACATGGAAATTA
chr16	6403663	6403664	chr16:6403664:C:T	rs2159546	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr16	6481427	6481428	chr16:6481428:C:T	rs878012	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr16	6482949	6482950	chr16:6482950:A:G	rs76610731	A	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	6580422	6580423	chr16:6580423:G:C	rs139491360	G	C	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr16	6646074	6646075	chr16:6646075:A:T	rs1861036	A	T	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr16	6815179	6815180	chr16:6815180:G:T	rs7204262	G	T	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr16	6906082	6906083	chr16:6906083:C:G	rs35069364	C	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr16	6961794	6961795	chr16:6961795:G:T	rs28437175	G	T	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr16	6961802	6961803	chr16:6961803:G:A	rs11865388	G	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr16	7103333	7103334	chr16:7103334:C:A	rs74011032	C	A	C	Msx3.mouse_homeodomain_1	10	1	-	6.109471090867755	6.692490737829109	CCCCTTAATAGGCAATTC
chr16	7335406	7335407	chr16:7335407:T:G	rs143806336	T	G	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr16	7532201	7532202	chr16:7532202:C:T	rs74520774	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	7532206	7532207	chr16:7532207:C:G	rs75584952	C	G	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr16	7597701	7597702	chr16:7597702:A:G	rs73488670	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	11.12585098148664	8.557691384303435	CTAATTATTTGGAAATTA
chr16	7744891	7744892	chr16:7744892:G:T	rs75596326	G	T	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr16	7843945	7843946	chr16:7843946:C:G	rs62019988	C	G	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr16	7964495	7964496	chr16:7964496:A:G	rs62018785	A	G	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr16	8046156	8046157	chr16:8046157:C:A	rs11644652	C	A	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr16	8146065	8146066	chr16:8146066:T:C	rs7187922	T	C	C	Msx3.mouse_homeodomain_1	10	1	-	5.815975896899631	4.739384725963153	GCAATTAAGCAGCTCTTG
chr16	8391495	8391496	chr16:8391496:T:C	rs17145777	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr16	8428097	8428098	chr16:8428098:C:T	rs62019929	C	T	c	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr16	8432348	8432349	chr16:8432349:A:T	rs144808103	A	T	a	Msx3.mouse_homeodomain_1	15	1	-	9.769721758533557	3.690808339175699	GCAATATTAAAACAATTA
chr16	8510486	8510487	chr16:8510487:A:G	rs4787235	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	7.410716461353185	2.8226222423300333	CTAATTACTAAGTGATAA
chr16	8531221	8531222	chr16:8531222:G:A	rs114324083	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	10.163975108685735	9.316132237805048	GCCATTAGCATGCAATTT
chr16	8555387	8555388	chr16:8555388:A:G	rs34150600	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr16	8847158	8847159	chr16:8847159:C:T	rs898050123	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr16	8932241	8932242	chr16:8932242:C:T	rs77188284	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr16	8950964	8950965	chr16:8950965:T:G	rs182909601	T	G	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr16	9054824	9054825	chr16:9054825:C:A	rs61198491	C	A	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr16	9406651	9406652	chr16:9406652:C:T	rs7186581	C	T	T	Msx3.mouse_homeodomain_1	3	1	+	6.879201467145335	4.632025491530143	GCGCTTGTTAATCAATTA
chr16	9439443	9439444	chr16:9439444:G:A	rs774468298	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr16	9661623	9661624	chr16:9661624:G:C	rs17568440	G	C	C	Msx3.mouse_homeodomain_1	12	1	-	7.997975128133602	4.498592109517444	GCAATAAATTACCCATTT
chr16	9706518	9706519	chr16:9706519:A:T	rs8048082	A	T	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr16	10286134	10286135	chr16:10286135:A:G	rs11642024	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr16	10473063	10473064	chr16:10473064:G:C	rs2883308	G	C	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr16	10539307	10539308	chr16:10539308:A:G	rs11074889	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr16	10553735	10553736	chr16:10553736:C:A	rs117229872	C	A	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr16	10736843	10736844	chr16:10736844:T:G	rs1965025	T	G	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr16	10736895	10736896	chr16:10736896:G:A	rs1344514	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr16	10924764	10924765	chr16:10924765:T:C	rs1139564	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.310434638011664	4.722340418988515	CCCATTAGTGTCCCATTA
chr16	10924765	10924766	chr16:10924766:G:A	rs45466393	G	A	G	Msx3.mouse_homeodomain_1	13	1	-	9.310434638011664	8.012219231649073	CCCATTAGTGTCCCATTA
chr16	11260962	11260963	chr16:11260963:C:T	rs1559392	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	11298914	11298915	chr16:11298915:C:T	rs8057417	C	T	C	Msx3.mouse_homeodomain_1	13	1	+	7.500828650639444	6.202613244276853	CCAATTGTTTCACCATTA
chr16	11354062	11354063	chr16:11354063:C:T	rs72773860	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr16	11361311	11361312	chr16:11361312:C:G	rs11074964	C	G	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	11527513	11527514	chr16:11527514:G:A	rs12596332	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr16	11584098	11584099	chr16:11584099:A:C	rs12444653	A	C	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr16	11640663	11640664	chr16:11640664:A:C	rs543322699	A	C	a	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr16	11680768	11680769	chr16:11680769:C:T	rs12929396	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr16	11965682	11965683	chr16:11965683:C:T	rs11075036	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr16	12027012	12027013	chr16:12027013:C:T	rs115878851	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr16	12344992	12344993	chr16:12344993:G:T	rs16959263	G	T	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr16	12478585	12478586	chr16:12478586:C:T	rs11860371	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr16	12525380	12525381	chr16:12525381:T:G	rs7203787	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	8.924045984890764	2.0165807479667586	GCACTTAGAAAATCATTA
chr16	12577721	12577722	chr16:12577722:A:G	rs11075100	A	G	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr16	12614475	12614476	chr16:12614476:A:G	rs1560105	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	7.763732155532716	5.246863527595638	GTAATAAACTCTAAATTA
chr16	12777781	12777782	chr16:12777782:T:C	rs4536458	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	6.862299830337812	2.2742056113146627	CAAACTAAGTGCCAATTA
chr16	12896773	12896774	chr16:12896774:C:A	rs13332811	C	A	C	Msx3.mouse_homeodomain_1	10	1	-	6.722283716492041	7.305303363453395	CCCATTAGATGCCAATAG
chr16	12995996	12995997	chr16:12995997:T:G	rs66662761	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	6.77165060982927	4.389063168358546	TCAATTTCCAGGGAATTA
chr16	13041763	13041764	chr16:13041764:C:T	rs2173863	C	T	T	Msx3.mouse_homeodomain_1	0	1	+	6.971305263828439	6.147714519568263	CTGATAAAATACCAATTC
chr16	13459778	13459779	chr16:13459779:C:G	rs11863151	C	G	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr16	13884233	13884234	chr16:13884234:T:G	rs8048606	T	G	c	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr16	14097397	14097398	chr16:14097398:G:T	rs72783461	G	T	G	Msx3.mouse_homeodomain_1	8	1	+	6.186548863353754	6.155827723041413	CCCATCCAGTAGTAATTA
chr16	14284184	14284185	chr16:14284185:C:A	rs30245	C	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr16	14912219	14912220	chr16:14912220:C:T	rs866041299	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr16	15943403	15943404	chr16:15943404:A:G	rs8050881	A	G	a	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr16	15956878	15956879	chr16:15956879:G:A	rs7195031	G	A	g	Msx3.mouse_homeodomain_1	3	1	-	7.849911937686145	5.602735962070951	CCACTTATACTCAGATTA
chr16	16879727	16879728	chr16:16879728:C:T	rs4782062	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr16	16888535	16888536	chr16:16888536:A:G	rs12596671	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	16889092	16889093	chr16:16889093:T:C	rs4238658	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr16	17125768	17125769	chr16:17125769:C:T	rs2890332	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr16	17296529	17296530	chr16:17296530:G:A	rs6498677	G	A	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr16	17334277	17334278	chr16:17334278:A:C	rs4782003	A	C	A	Msx3.mouse_homeodomain_1	5	1	-	6.296598307440746	1.8540165299735833	ACACTTAGCACGCAGTTA
chr16	17343895	17343896	chr16:17343896:C:G	rs113712355	C	G	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr16	17343912	17343913	chr16:17343913:A:G	rs7185284	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.165348648227272	2.5772544292041197	AAAATTAAAGCCCAATGA
chr16	17629086	17629087	chr16:17629087:C:T	rs12445913	C	T	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr16	17659470	17659471	chr16:17659471:T:C	rs36033825	T	C	t	Msx3.mouse_homeodomain_1	15	1	+	6.4622151684748745	-0.4452500684491303	CTACTCATGGACCAATTG
chr16	17937093	17937094	chr16:17937094:C:G	rs186657512	C	G	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr16	18791146	18791147	chr16:18791147:C:T	rs1969062	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr16	18969284	18969285	chr16:18969285:G:A	rs35067852	G	A	g	Msx3.mouse_homeodomain_1	1	1	-	8.458067598153576	7.610224727272892	ACAGTCAAAAAGAAATTA
chr16	19102731	19102732	chr16:19102732:A:G	rs952919622	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	7.441550725062849	5.048564982552349	GCAATTTGGTGCCAATAA
chr16	19140896	19140897	chr16:19140897:G:A	rs4782211	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	8.676179569305525	9.682728902150732	ACATTTAAGAGGTAATTA
chr16	19366490	19366491	chr16:19366491:G:A	rs7194009	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr16	19392571	19392572	chr16:19392572:A:C	rs8059797	A	C	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr16	19601569	19601570	chr16:19601570:C:T	rs55755551	C	T	c	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr16	19711043	19711044	chr16:19711044:T:C	rs3829539	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	6.706238768158159	5.5964232308345645	CTAATTCAGGAGCATTTA
chr16	20323356	20323357	chr16:20323357:C:T	rs4411505	C	T	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr16	20899418	20899419	chr16:20899419:A:G	rs144698554	A	G	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr16	21076173	21076174	chr16:21076174:G:A	rs2639781	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	21076808	21076809	chr16:21076809:T:C	rs9937801	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr16	21627146	21627147	chr16:21627147:T:A	rs3743703	T	A	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr16	22372797	22372798	chr16:22372798:A:C	rs142316885	A	C	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr16	22614314	22614315	chr16:22614315:T:C	rs294267	T	C	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr16	22614315	22614316	chr16:22614316:G:A	rs199805732	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	22664947	22664948	chr16:22664948:T:C	rs154523	T	C	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	23132208	23132209	chr16:23132209:A:C	chr16:23132209:A:C	A	C	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr16	23132239	23132240	chr16:23132240:A:C	rs573017561	A	C	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr16	23370592	23370593	chr16:23370593:G:A	rs889299	G	A	A	Msx3.mouse_homeodomain_1	11	1	+	10.444897883665405	9.247946858489993	ACAATAAAAGAGCAATCA
chr16	23501270	23501271	chr16:23501271:G:T	rs4968013	G	T	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr16	23641698	23641699	chr16:23641699:A:G	rs8058061	A	G	G	Msx3.mouse_homeodomain_1	3	1	+	5.595663395409398	1.6262324190405208	GCCATTAGTCCCGGATTA
chr16	23803223	23803224	chr16:23803224:C:T	rs34214094	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.92793357803702	8.080090707156334	GCAATTAAAAAGTTATAA
chr16	23901120	23901121	chr16:23901121:A:G	rs8047428	A	G	G	Msx3.mouse_homeodomain_1	11	1	+	9.529468062493276	10.726419087668688	CTAATCAAAACACAATTG
chr16	23933161	23933162	chr16:23933162:A:G	rs3785392	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr16	24430935	24430936	chr16:24430936:T:C	rs1267582	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	7.325818104648408	8.434327659813153	ACAATAAGTGACCTATTA
chr16	24838196	24838197	chr16:24838197:C:T	rs28493028	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr16	24838212	24838213	chr16:24838213:C:T	rs62032809	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr16	25374627	25374628	chr16:25374628:C:A	rs118091572	C	A	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	25432858	25432859	chr16:25432859:C:G	rs34376676	C	G	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr16	25854403	25854404	chr16:25854404:C:T	rs4622515	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr16	26240935	26240936	chr16:26240936:A:G	rs3112550	A	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	26342198	26342199	chr16:26342199:A:G	rs2013547	A	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr16	26443420	26443421	chr16:26443421:C:T	rs2023661	C	T	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	26667452	26667453	chr16:26667453:A:C	rs7193714	A	C	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr16	27378952	27378953	chr16:27378953:T:A	rs12919770	T	A	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr16	27394661	27394662	chr16:27394662:A:T	rs11639739	A	T	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	27729339	27729340	chr16:27729340:G:A	rs1871672	G	A	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr16	27779798	27779799	chr16:27779799:C:A	rs79450439	C	A	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	27825796	27825797	chr16:27825797:T:C	rs705909	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.866050665622254	4.277956446599104	CCCCTTATAAAGCCATTA
chr16	28025612	28025613	chr16:28025613:C:A	rs374048032	C	A	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr16	28064979	28064980	chr16:28064980:T:C	rs34365541	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	12.677826114802919	11.737282122416772	ATAATCAACATGCAATTA
chr16	28289126	28289127	chr16:28289127:T:C	rs36019610	T	C	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr16	28480984	28480985	chr16:28480985:G:T	rs117481765	G	T	.	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr16	28974169	28974170	chr16:28974170:T:G	rs184150729	T	G	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	28974175	28974176	chr16:28974176:C:A	rs1033197883	C	A	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr16	29115409	29115410	chr16:29115410:G:C	rs142838136	G	C	.	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr16	29142481	29142482	chr16:29142482:A:G	rs1646113	A	G	.	Msx3.mouse_homeodomain_1	9	1	+	8.216949833009059	7.276405840622912	CCCATCAAAATGCAATTC
chr16	29142486	29142487	chr16:29142487:A:G	rs2244752	A	G	.	Msx3.mouse_homeodomain_1	14	1	+	8.216949833009059	3.6288556139859076	CCCATCAAAATGCAATTC
chr16	29736841	29736842	chr16:29736842:A:G	chr16:29736842:A:G	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr16	29762120	29762121	chr16:29762121:G:A	rs449346	G	A	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr16	29949271	29949272	chr16:29949272:T:C	rs4788195	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr16	30884391	30884392	chr16:30884392:C:T	rs4889653	C	T	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr16	31277805	31277806	chr16:31277806:T:C	rs41370044	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	9.754158314545027	3.655612634675892	TAAATTGAATTGTAATTA
chr16	31386906	31386907	chr16:31386907:G:A	rs145988221	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr16	31874723	31874724	chr16:31874724:C:T	rs149171446	C	T	.	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr16	34572397	34572398	chr16:34572398:A:G	rs1487021157	A	G	.	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr16	46387829	46387830	chr16:46387830:T:C	rs4249076	T	C	.	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr16	46399874	46399875	chr16:46399875:T:C	rs4967431	T	C	.	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr16	48275697	48275698	chr16:48275698:T:A	rs9931294	T	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr16	48950331	48950332	chr16:48950332:T:C	rs7186607	T	C	C	Msx3.mouse_homeodomain_1	17	1	-	8.98880982045213	6.420650223268926	CCAAGTATGAACTAATTA
chr16	49250947	49250948	chr16:49250948:T:A	rs144417330	T	A	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr16	49507777	49507778	chr16:49507778:C:T	rs12596987	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr16	49542336	49542337	chr16:49542337:T:C	rs1362629	T	C	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr16	49649578	49649579	chr16:49649579:G:A	rs55916239	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr16	49649609	49649610	chr16:49649610:A:G	rs1819866	A	G	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr16	49649616	49649617	chr16:49649617:A:C	rs2216059	A	C	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr16	49852110	49852111	chr16:49852111:G:A	rs7499867	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr16	49978402	49978403	chr16:49978403:G:A	rs111643840	G	A	G	Msx3.mouse_homeodomain_1	4	1	-	6.297983116240402	12.396528796109536	ACAACTATAAGCCCATTA
chr16	50155913	50155914	chr16:50155914:G:C	chr16:50155914:G:C	G	C	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr16	50266249	50266250	chr16:50266250:G:A	rs763924984	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr16	50422925	50422926	chr16:50422926:A:G	rs4785418	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr16	50509830	50509831	chr16:50509831:G:A	rs578137895	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	6.129088610901282	5.356248434159386	CCCGTTAAGGGGCAATTG
chr16	50799976	50799977	chr16:50799977:T:C	rs111951225	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.1561614351860845	1.0576157553169527	TCTATTAAAGGCTACTTA
chr16	50836648	50836649	chr16:50836649:G:T	rs769866583	G	T	G	Msx3.mouse_homeodomain_1	0	1	-	5.664403260218493	4.92324521492836	CCGCTCAGAGAGCAATTG
chr16	50863185	50863186	chr16:50863186:C:T	rs192791036	C	T	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr16	51151499	51151500	chr16:51151500:C:T	rs142329607	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr16	51609724	51609725	chr16:51609725:T:C	rs2648004	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr16	51907835	51907836	chr16:51907836:T:A	rs80351341	T	A	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr16	52027134	52027135	chr16:52027135:A:G	rs12149256	A	G	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr16	52105772	52105773	chr16:52105773:A:G	rs12928668	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	52307808	52307809	chr16:52307809:A:G	rs12449286	A	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr16	52422553	52422554	chr16:52422554:G:A	rs72805462	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr16	52494934	52494935	chr16:52494935:T:G	rs9302555	T	G	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr16	53059807	53059808	chr16:53059808:G:A	rs12919486	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr16	53154608	53154609	chr16:53154609:A:G	rs60593136	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr16	53714710	53714711	chr16:53714711:T:G	chr16:53714711:T:G	T	G	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr16	53850200	53850201	chr16:53850201:A:G	rs2160481	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr16	53971661	53971662	chr16:53971662:A:G	rs2388410	A	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr16	54027659	54027660	chr16:54027660:T:A	rs12447135	T	A	.	Msx3.mouse_homeodomain_1	17	1	-	9.77492802601638	6.404141830137581	CAACTTACCATCCAATTA
chr16	54055838	54055839	chr16:54055839:T:C	rs79497105	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr16	54236744	54236745	chr16:54236745:T:C	rs17253388	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.065441123281168	3.4773469042580176	ACCATTAAAAGTCTATTA
chr16	54277968	54277969	chr16:54277969:T:A	rs16953303	T	A	T	Msx3.mouse_homeodomain_1	1	1	-	7.255051013465061	9.107497519524841	AAAGTTACAGGGCAATTA
chr16	54317205	54317206	chr16:54317206:C:T	rs112560675	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr16	54325560	54325561	chr16:54325561:A:G	rs2122488	A	G	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr16	54334761	54334762	chr16:54334762:G:T	rs11859377	G	T	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr16	54360697	54360698	chr16:54360698:G:T	rs7205641	G	T	t	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr16	54363777	54363778	chr16:54363778:C:T	rs13332146	C	T	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr16	54363783	54363784	chr16:54363784:A:C	chr16:54363784:A:C	A	C	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	54363783	54363784	chr16:54363784:A:G	rs13337207	A	G	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	54408965	54408966	chr16:54408966:A:G	rs16953500	A	G	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	54739683	54739684	chr16:54739684:T:C	rs8050695	T	C	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr16	54926206	54926207	chr16:54926207:A:G	rs114844221	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	10.80084533267916	8.232685735495956	GCAATTATCTCAAAATTA
chr16	55058684	55058685	chr16:55058685:C:T	rs12449074	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr16	55270220	55270221	chr16:55270221:A:G	rs7194158	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr16	55444365	55444366	chr16:55444366:G:C	rs2540717	G	C	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr16	55495380	55495381	chr16:55495381:C:T	rs17859960	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr16	55614747	55614748	chr16:55614748:C:T	rs9788806	C	T	c	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	55943662	55943663	chr16:55943663:G:A	rs6499809	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	56048930	56048931	chr16:56048931:T:G	rs7204897	T	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr16	56174330	56174331	chr16:56174331:T:C	rs7187026	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.838665658758592	0.9312004218345877	CTAATTATACATACATTA
chr16	56605675	56605676	chr16:56605676:T:C	rs12597222	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr16	56746406	56746407	chr16:56746407:T:C	rs759877864	T	C	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr16	57013500	57013501	chr16:57013501:A:T	rs289704	A	T	N	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr16	57462361	57462362	chr16:57462362:G:A	rs75079260	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr16	57609150	57609151	chr16:57609151:G:A	rs78439017	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr16	57611594	57611595	chr16:57611595:G:A	rs7204900	G	A	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr16	57642988	57642989	chr16:57642989:G:A	rs17325839	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	57695518	57695519	chr16:57695519:A:G	rs7204155	A	G	G	Msx3.mouse_homeodomain_1	14	1	-	8.15596756634027	8.921748879435636	ACCATTACAAGGCATTTA
chr16	58351906	58351907	chr16:58351907:G:A	rs17241119	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	9.047217166015226	8.22362642175505	CCCATTAAACCCCAATAA
chr16	58657340	58657341	chr16:58657341:G:T	rs71389031	G	T	-	Msx3.mouse_homeodomain_1	9	1	-	8.526778986427086	9.833009290371415	CTACTAAAACTACAATTA
chr16	58657362	58657363	chr16:58657363:A:G	rs28553522	A	G	-	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr16	58755964	58755965	chr16:58755965:T:C	rs141447488	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr16	58848592	58848593	chr16:58848593:G:A	rs972702896	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr16	59289317	59289318	chr16:59289318:A:G	rs1582598	A	G	G	Msx3.mouse_homeodomain_1	0	1	+	6.704803473841202	7.813313029005946	ACAACTAAAGGGAAATTA
chr16	60100656	60100657	chr16:60100657:G:A	rs9788785	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr16	60105992	60105993	chr16:60105993:T:C	rs1423947	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.530997699187282	4.561566722818403	GTGATTATTAGGCAATTT
chr16	60123198	60123199	chr16:60123199:C:A	rs7189276	C	A	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr16	60815101	60815102	chr16:60815102:T:G	rs62045414	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	7.004326301265379	2.4174697201388704	GCAATTAGAATCTAGTAA
chr16	60833182	60833183	chr16:60833183:G:A	rs527287572	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr16	61385621	61385622	chr16:61385622:A:G	rs146347452	A	G	a	Msx3.mouse_homeodomain_1	14	1	+	6.5141299491878994	1.9260357301647497	TCCATTAATCAGCCATCA
chr16	62226059	62226060	chr16:62226060:C:A	rs58987471	C	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr16	62465169	62465170	chr16:62465170:T:G	rs12449171	T	G	T	Msx3.mouse_homeodomain_1	11	1	-	7.732217741268536	9.01463430715421	GCTATCAATTAAAAATTA
chr16	62889246	62889247	chr16:62889247:A:G	rs2962427	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr16	62950616	62950617	chr16:62950617:C:T	rs72785953	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	7.03364095384998	9.090915132756177	TCCATTCATATGCGATTA
chr16	63217025	63217026	chr16:63217026:T:A	rs8047822	T	A	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr16	63596255	63596256	chr16:63596256:G:T	rs1895512	G	T	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr16	63697697	63697698	chr16:63697698:C:T	rs56078845	C	T	c	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr16	63876721	63876722	chr16:63876722:T:C	rs62047169	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr16	63893533	63893534	chr16:63893534:T:G	rs62047211	T	G	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr16	63949030	63949031	chr16:63949031:T:G	rs12926674	T	G	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr16	64318188	64318189	chr16:64318189:G:T	rs9302562	G	T	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr16	64356599	64356600	chr16:64356600:C:T	rs59495798	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr16	64356609	64356610	chr16:64356610:C:T	rs184405704	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr16	64407995	64407996	chr16:64407996:C:T	rs9938229	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr16	64408556	64408557	chr16:64408557:C:T	rs7204924	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr16	64784925	64784926	chr16:64784926:C:A	rs62039958	C	A	C	Msx3.mouse_homeodomain_1	14	1	+	7.806779100462647	11.367758138716836	CCAATTAAAATTCACTTC
chr16	65223862	65223863	chr16:65223863:C:T	rs4377158	C	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr16	65226401	65226402	chr16:65226402:T:A	rs725511	T	A	A	Msx3.mouse_homeodomain_1	9	1	+	8.35606918965519	8.770210461528272	CCAGTTAAGTAGCATTTA
chr16	65229704	65229705	chr16:65229705:A:T	rs9673255	A	T	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr16	65574670	65574671	chr16:65574671:C:T	rs4238836	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	7.343197013006166	6.146245987830755	TACATTATCCCGCAATTA
chr16	65601498	65601499	chr16:65601499:A:G	rs6499011	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	65648426	65648427	chr16:65648427:T:C	rs8044235	T	C	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr16	65667934	65667935	chr16:65667935:T:A	rs8057020	T	A	A	Msx3.mouse_homeodomain_1	17	1	-	7.223829745903994	3.853043550025196	TTCATCAGAATCCCATTA
chr16	65856024	65856025	chr16:65856025:T:C	rs1030264740	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr16	66188992	66188993	chr16:66188993:T:C	rs58571355	T	C	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr16	66291934	66291935	chr16:66291935:T:A	rs74896849	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	7.765902278467147	1.686988859109289	TTAATGAAATTCCAATTT
chr16	66344799	66344800	chr16:66344800:T:C	rs77715854	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	9.07797667154539	9.925819542426073	GTAATTAAAATTAAATAA
chr16	66413099	66413100	chr16:66413100:T:A	rs72786466	T	A	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr16	66422295	66422296	chr16:66422296:C:T	rs41431848	C	T	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr16	66512078	66512079	chr16:66512079:C:T	rs16956600	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr16	67364465	67364466	chr16:67364466:C:T	rs9922615	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	7.270566280707633	6.422723409826946	ACAATCAAGACTGAATTA
chr16	68041992	68041993	chr16:68041993:C:G	rs80256426	C	G	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr16	68390195	68390196	chr16:68390196:C:T	rs9921278	C	T	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr16	68431324	68431325	chr16:68431325:C:A	rs953497804	C	A	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr16	68774379	68774380	chr16:68774380:C:T	rs12708889	C	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr16	69025465	69025466	chr16:69025466:T:C	rs13332087	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	6.781419939289347	7.88992949445409	ATACTCACAAACCAATCA
chr16	69444771	69444772	chr16:69444772:G:T	rs2311395	G	T	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr16	69537277	69537278	chr16:69537278:T:C	rs74462119	T	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr16	69723101	69723102	chr16:69723102:T:C	rs143608168	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	9.833009290371415	8.723193753047823	CTACTAAAAATACAATTA
chr16	69849321	69849322	chr16:69849322:G:A	rs140413682	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr16	70412296	70412297	chr16:70412297:T:C	rs75273855	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	6.994427999223002	4.937153820316807	ACAATTAGATCACAAATA
chr16	70576705	70576706	chr16:70576706:G:A	rs185558304	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr16	70629368	70629369	chr16:70629369:T:A	rs12917749	T	A	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr16	70646086	70646087	chr16:70646087:A:C	rs11646267	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	9.871855674850433	4.213866422900734	TTAATAAAAAAAAAATTA
chr16	70649298	70649299	chr16:70649299:C:T	rs7192723	C	T	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr16	71485045	71485046	chr16:71485046:C:A	rs9933647	C	A	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr16	71592342	71592343	chr16:71592343:C:G	rs71403855	C	G	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr16	71814658	71814659	chr16:71814659:G:A	rs766966789	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr16	72019241	72019242	chr16:72019242:T:C	rs10048111	T	C	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr16	72371111	72371112	chr16:72371112:A:C	rs78507921	A	C	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr16	72428624	72428625	chr16:72428625:A:C	rs45475692	A	C	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr16	72578948	72578949	chr16:72578949:C:A	rs8046749	C	A	C	Msx3.mouse_homeodomain_1	8	1	-	9.950592025071206	9.919870884758861	GTAGTTAAGCACTAATTA
chr16	72988597	72988598	chr16:72988598:A:C	rs11862771	A	C	C	Msx3.mouse_homeodomain_1	9	1	-	12.051028996303174	11.524626275790112	GCAATTGAATTCCAATCA
chr16	72988604	72988605	chr16:72988605:T:C	rs4541098	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	12.051028996303174	9.534160368366098	GCAATTGAATTCCAATCA
chr16	72995260	72995261	chr16:72995261:T:C	rs7193343	T	C	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr16	73036723	73036724	chr16:73036724:C:G	rs149708028	C	G	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr16	73054814	73054815	chr16:73054815:T:C	rs763224126	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr16	73065378	73065379	chr16:73065379:C:T	rs753124362	C	T	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr16	73094246	73094247	chr16:73094247:G:A	rs1183965	G	A	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr16	73149689	73149690	chr16:73149690:G:C	rs8062079	G	C	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	73509056	73509057	chr16:73509057:T:C	rs16972061	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr16	73548479	73548480	chr16:73548480:A:C	rs12600044	A	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr16	73659363	73659364	chr16:73659364:T:A	rs987884	T	A	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr16	74109129	74109130	chr16:74109130:C:T	rs7500248	C	T	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr16	74128762	74128763	chr16:74128763:G:C	rs75723453	G	C	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr16	74438647	74438648	chr16:74438648:G:T	rs11149710	G	T	.	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr16	74438685	74438686	chr16:74438686:C:T	rs12444150	C	T	.	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr16	74561750	74561751	chr16:74561751:A:G	rs4888254	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr16	74595182	74595183	chr16:74595183:G:T	rs190189443	G	T	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	74786172	74786173	chr16:74786173:C:A	rs241371	C	A	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr16	75027003	75027004	chr16:75027004:T:C	rs75562502	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr16	75090879	75090880	chr16:75090880:G:A	rs147882572	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	75177154	75177155	chr16:75177155:A:G	rs72802324	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	7.086679955115268	4.56981132717819	GAAATAAAGGAGCAATAA
chr16	75319776	75319777	chr16:75319777:T:C	rs13330780	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr16	75376899	75376900	chr16:75376900:C:A	rs8056080	C	A	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr16	75801382	75801383	chr16:75801383:C:A	rs57999637	C	A	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr16	75919346	75919347	chr16:75919347:A:T	rs28532250	A	T	T	Msx3.mouse_homeodomain_1	17	1	+	11.117634907604444	7.7468487117256455	CTGATTATCTAACAATTA
chr16	76008883	76008884	chr16:76008884:C:T	rs1846199	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr16	76137783	76137784	chr16:76137784:A:G	rs184007459	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr16	76208531	76208532	chr16:76208532:A:T	rs8052613	A	T	A	Msx3.mouse_homeodomain_1	4	1	-	8.179632332392528	1.274610786656448	CCAATTACATGCAAATTC
chr16	76410703	76410704	chr16:76410704:G:T	rs8057471	G	T	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr16	76421889	76421890	chr16:76421890:G:A	rs11149897	G	A	g	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	76434476	76434477	chr16:76434477:C:T	rs12919972	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr16	76434484	76434485	chr16:76434485:G:A	rs7205737	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	7.0731579735237515	5.964648418359008	GCAATCACCACTTGATTA
chr16	76517176	76517177	chr16:76517177:C:G	rs34411797	C	G	C	Msx3.mouse_homeodomain_1	11	1	+	7.821409484533874	7.735943943823613	GAAATGAGGAACTAATTA
chr16	76755829	76755830	chr16:76755830:C:T	rs56142506	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr16	76967715	76967716	chr16:76967716:T:A	rs150376783	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	8.428478145977756	5.05769195009896	TCAGTCAGAGTCCAATTA
chr16	77198277	77198278	chr16:77198278:T:G	rs141925298	T	G	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr16	77214063	77214064	chr16:77214064:G:A	rs12051196	G	A	G	Msx3.mouse_homeodomain_1	14	1	-	6.639331828782926	5.87355051568756	CCACTTACTGATCACTTA
chr16	77336240	77336241	chr16:77336241:C:A	rs11149981	C	A	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr16	77354834	77354835	chr16:77354835:A:T	rs182132	A	T	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	77469149	77469150	chr16:77469150:G:A	rs12448922	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	8.319069841821868	6.873947178255388	TTCATTACCTTCCAATTG
chr16	77678308	77678309	chr16:77678309:C:T	rs9929304	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr16	77739512	77739513	chr16:77739513:A:C	rs9652677	A	C	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr16	77897349	77897350	chr16:77897350:G:C	rs112043804	G	C	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr16	77914150	77914151	chr16:77914151:T:C	rs62042213	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	8.431771661896246	6.3744974829900505	CTGATTATTTAACAATTG
chr16	78196613	78196614	chr16:78196614:G:A	rs113155230	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr16	78196637	78196638	chr16:78196638:C:T	rs80303448	C	T	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr16	78290017	78290018	chr16:78290018:A:G	rs9932306	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	7.941440381321992	1.8428947014528587	GTAATAAAAGTGACATTA
chr16	78324930	78324931	chr16:78324931:A:G	rs79706995	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	8.728126882324656	7.721577549479444	TCAATTATATCTCAATAA
chr16	78462465	78462466	chr16:78462466:C:G	rs74028014	C	G	C	Msx3.mouse_homeodomain_1	12	1	+	5.795045687458949	2.295662668842791	GCACTCACACTGCTATTA
chr16	78524341	78524342	chr16:78524342:A:G	rs2738744	A	G	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr16	78580529	78580530	chr16:78580530:C:G	rs8056137	C	G	C	Msx3.mouse_homeodomain_1	11	1	+	5.906939242318958	5.821473701608697	CCCATCACGAACAAATTG
chr16	78665405	78665406	chr16:78665406:A:G	rs116271025	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr16	78803132	78803133	chr16:78803133:T:G	rs9931801	T	G	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr16	78811244	78811245	chr16:78811245:G:A	rs12927430	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr16	78822838	78822839	chr16:78822839:G:C	rs6564599	G	C	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr16	78866338	78866339	chr16:78866339:A:C	rs2075832	A	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr16	78896632	78896633	chr16:78896633:A:C	rs9931349	A	C	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr16	79049224	79049225	chr16:79049225:G:A	rs60349708	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr16	79079721	79079722	chr16:79079722:A:G	rs12102852	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr16	79130716	79130717	chr16:79130717:C:T	rs77317467	C	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr16	79247602	79247603	chr16:79247603:C:G	rs55653394	C	G	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr16	79253468	79253469	chr16:79253469:G:T	rs146976182	G	T	G	Msx3.mouse_homeodomain_1	7	1	-	8.343748568654469	9.733635115359224	GGGATTACATAGAAATTA
chr16	79600917	79600918	chr16:79600918:G:C	rs565106927	G	C	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr16	79600920	79600921	chr16:79600921:C:T	rs1019493176	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr16	79604180	79604181	chr16:79604181:A:G	rs42399	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr16	79604184	79604185	chr16:79604185:G:A	rs75785984	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	7.670721219666516	6.5622116645017705	GTCATTATTGACCAATTC
chr16	79766864	79766865	chr16:79766865:T:C	rs7190102	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr16	79766877	79766878	chr16:79766878:T:C	rs4319782	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr16	79766909	79766910	chr16:79766910:T:C	rs112537877	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr16	79845844	79845845	chr16:79845845:C:T	rs149277762	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr16	79851203	79851204	chr16:79851204:A:G	rs9941040	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr16	79989652	79989653	chr16:79989653:C:T	rs149568020	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr16	80016763	80016764	chr16:80016764:A:G	rs11642717	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr16	80178083	80178084	chr16:80178084:A:G	rs11646831	A	G	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr16	80324475	80324476	chr16:80324476:C:T	rs111230544	C	T	C	Msx3.mouse_homeodomain_1	5	1	+	6.489055770009059	8.88204151251956	GCAATCGATAAGCAAATA
chr16	80345762	80345763	chr16:80345763:T:C	rs75644399	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr16	80381992	80381993	chr16:80381993:G:T	rs1484032	G	T	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr16	80407522	80407523	chr16:80407523:A:C	rs12920118	A	C	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr16	80428454	80428455	chr16:80428455:G:A	rs9972739	G	A	A	Msx3.mouse_homeodomain_1	0	1	-	9.017981599020708	8.194390854760528	CTGATTAAAGATCAATCA
chr16	80457669	80457670	chr16:80457670:C:A	rs10514499	C	A	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr16	80498727	80498728	chr16:80498728:A:G	rs11859045	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr16	80498740	80498741	chr16:80498741:A:C	rs55863307	A	C	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr16	80824497	80824498	chr16:80824498:A:G	rs148918736	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr16	80836761	80836762	chr16:80836762:C:T	rs117139251	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr16	80988204	80988205	chr16:80988205:T:C	rs2123626	T	C	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr16	80988210	80988211	chr16:80988211:C:A	rs2123627	C	A	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr16	81189690	81189691	chr16:81189691:C:T	rs9931907	C	T	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr16	81404978	81404979	chr16:81404979:A:G	rs12447321	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	7.656939179451446	5.214861952519888	GCACTTATCAACCCATCA
chr16	81524963	81524964	chr16:81524964:A:T	rs11649197	A	T	t	Msx3.mouse_homeodomain_1	16	1	-	9.833009290371415	5.948171362848357	CTACTAAAAATACAATTA
chr16	81782974	81782975	chr16:81782975:C:G	rs6564919	C	G	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr16	81815776	81815777	chr16:81815777:A:G	rs4243215	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	81864759	81864760	chr16:81864760:G:A	rs117963709	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr16	81864776	81864777	chr16:81864777:G:C	rs12102535	G	C	C	Msx3.mouse_homeodomain_1	13	1	-	7.274131994995202	8.101050872566383	GCCATCACCAAACCATTA
chr16	81924692	81924693	chr16:81924693:C:G	rs7192724	C	G	C	Msx3.mouse_homeodomain_1	12	1	+	6.509165995687942	3.009782977071785	CTCATTGCAAACCAATTC
chr16	82153309	82153310	chr16:82153310:T:C	rs11642247	T	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr16	82189517	82189518	chr16:82189518:T:A	rs2059276	T	A	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	82225099	82225100	chr16:82225100:A:G	rs62046763	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr16	82329627	82329628	chr16:82329628:G:A	rs7190761	G	A	A	Msx3.mouse_homeodomain_1	0	1	-	6.60818204930958	5.7845913050494016	CCAATCACACTGAAATTT
chr16	82654462	82654463	chr16:82654463:T:G	rs150085830	T	G	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr16	82674131	82674132	chr16:82674132:C:T	rs4783256	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr16	82761607	82761608	chr16:82761608:C:G	rs8046812	C	G	G	Msx3.mouse_homeodomain_1	12	1	+	6.962613394457723	3.463230375841563	ACAATTAACTGGCAGTTT
chr16	82783645	82783646	chr16:82783646:G:A	rs11646849	G	A	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr16	82788786	82788787	chr16:82788787:G:T	rs78798001	G	T	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	82788787	82788788	chr16:82788788:G:C	rs79351177	G	C	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	82858155	82858156	chr16:82858156:T:C	rs117199649	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr16	82859909	82859910	chr16:82859910:T:C	rs932213633	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	11.519784657667994	10.44319348673152	GTCATTACAGACTAATTA
chr16	83070693	83070694	chr16:83070694:T:C	rs4783320	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr16	83070701	83070702	chr16:83070702:A:C	rs8063680	A	C	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr16	83113406	83113407	chr16:83113407:T:G	rs9923554	T	G	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr16	83157476	83157477	chr16:83157477:C:A	rs7194491	C	A	A	Msx3.mouse_homeodomain_1	10	1	-	7.15348430247077	7.736503949432122	GACTTTAAAAGGCAATTA
chr16	83344490	83344491	chr16:83344491:A:G	rs1424168	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr16	83577365	83577366	chr16:83577366:C:G	rs4077575	C	G	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr16	83631322	83631323	chr16:83631323:T:A	rs77663027	T	A	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr16	83706573	83706574	chr16:83706574:T:A	rs1364118	T	A	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr16	83770328	83770329	chr16:83770329:A:C	rs7194149	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	6.790444191665612	1.7169114155562846	GCAATTGTAAAGCACTTC
chr16	83819423	83819424	chr16:83819424:G:A	rs40007	G	A	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr16	83904164	83904165	chr16:83904165:A:G	rs114918850	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr16	83904179	83904180	chr16:83904180:C:T	rs62047932	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr16	83983683	83983684	chr16:83983684:G:T	rs79142310	G	T	G	Msx3.mouse_homeodomain_1	11	1	-	9.857420847465608	8.575004281579936	AGAATAATATACCAATTA
chr16	84045327	84045328	chr16:84045328:G:C	rs16962619	G	C	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr16	84198121	84198122	chr16:84198122:T:C	rs4414480	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	8.776474138213644	5.6515249846197895	GGGATTAGCATCTAATTA
chr16	84210054	84210055	chr16:84210055:G:C	rs8051996	G	C	C	Msx3.mouse_homeodomain_1	10	1	-	6.587800072125039	7.0487527250373985	CCAGTTAGAGCCTAATTG
chr16	84261226	84261227	chr16:84261227:C:G	rs117811752	C	G	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr16	84345141	84345142	chr16:84345142:C:A	rs74373329	C	A	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr16	84428305	84428306	chr16:84428306:T:G	rs76330096	T	G	T	Msx3.mouse_homeodomain_1	12	1	+	9.89955692386745	7.845296568817775	ACGATTATCTGGTAATTA
chr16	84503579	84503580	chr16:84503580:C:A	rs437432	C	A	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr16	84508873	84508874	chr16:84508874:G:T	rs9937245	G	T	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	84508909	84508910	chr16:84508910:C:T	rs35473398	C	T	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr16	84521066	84521067	chr16:84521067:T:C	rs2617861	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	7.835286411732549	6.8287370788873405	GGAATTGCAGAGCAATTG
chr16	84751771	84751772	chr16:84751772:G:A	rs17831494	G	A	g	Msx3.mouse_homeodomain_1	2	1	+	5.816292028709184	8.333160656646264	TCGATTACGGGCCAGTTA
chr16	84765973	84765974	chr16:84765974:C:T	rs11645315	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr16	84773654	84773655	chr16:84773655:C:T	rs244562	C	T	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr16	85005341	85005342	chr16:85005342:C:T	rs9921436	C	T	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr16	85128381	85128382	chr16:85128382:T:A	rs78775859	T	A	T	Msx3.mouse_homeodomain_1	12	1	+	10.698196634946278	9.632010538743938	CTAATTAAAAAATAATAA
chr16	85129002	85129003	chr16:85129003:G:T	rs62048587	G	T	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr16	85129005	85129006	chr16:85129006:C:T	rs552865580	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr16	85211360	85211361	chr16:85211361:C:T	rs8058723	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	7.49557911009462	6.387069554929874	GCAATAATAAAGTGCTTA
chr16	85413577	85413578	chr16:85413578:C:T	rs7404202	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr16	85548375	85548376	chr16:85548376:A:G	rs10863199	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr16	85912121	85912122	chr16:85912122:T:G	rs768410	T	G	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr16	85912410	85912411	chr16:85912411:C:A	rs925994	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	7.89124971369377	5.379940953924946	TTAATAACATAGCAATAA
chr16	85917314	85917315	chr16:85917315:A:G	rs4843860	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	7.2797234696103965	4.76285484167332	GCAATTAAAATGCAGATA
chr16	85927360	85927361	chr16:85927361:G:A	rs1472235	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.731581899709546	8.623072344544802	GCAGTTATTAAATAATTA
chr16	86050748	86050749	chr16:86050749:T:A	rs10863204	T	A	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr16	86070557	86070558	chr16:86070558:T:C	rs8059288	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr16	86118731	86118732	chr16:86118732:C:A	rs61462202	C	A	C	Msx3.mouse_homeodomain_1	3	1	-	6.367841802316327	5.209922438537113	GCAGGTAGGTACCAATTA
chr16	86363345	86363346	chr16:86363346:C:G	rs79806469	C	G	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr16	86383627	86383628	chr16:86383628:C:A	rs8054549	C	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr16	86383639	86383640	chr16:86383640:A:G	rs58863524	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr16	86383655	86383656	chr16:86383656:A:G	rs1728387	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.347451548662491	3.759357329639341	GGAATGAATGTCCAATTA
chr16	86439753	86439754	chr16:86439754:C:G	rs35673311	C	G	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr16	86501474	86501475	chr16:86501475:T:G	rs28419139	T	G	G	Msx3.mouse_homeodomain_1	6	1	-	9.41968412135384	5.174668314881679	TAAATTAGTTAGCAATTG
chr16	86578419	86578420	chr16:86578420:G:C	rs552979239	G	C	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr16	86593997	86593998	chr16:86593998:A:G	rs34968499	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr16	86593999	86594000	chr16:86594000:G:A	rs1895519	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr16	86758784	86758785	chr16:86758785:A:T	rs80247597	A	T	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr16	86772192	86772193	chr16:86772193:T:A	rs11643847	T	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr16	86784094	86784095	chr16:86784095:C:T	rs2194347	C	T	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr16	86824151	86824152	chr16:86824152:T:A	rs9673553	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	11.112905166134151	7.742118970255355	ACGATTATAAAATAATTA
chr16	86886904	86886905	chr16:86886905:C:T	rs75663580	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	7.412506757733676	6.63966658099178	GCCTTTAAGAAGAAATTA
chr16	86910255	86910256	chr16:86910256:G:A	rs78841395	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr16	87250486	87250487	chr16:87250487:T:C	rs7200158	T	C	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr16	87255292	87255293	chr16:87255293:T:A	rs80240235	T	A	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr16	87255302	87255303	chr16:87255303:T:C	rs7197865	T	C	T	Msx3.mouse_homeodomain_1	11	1	-	6.5907911405016355	7.787742165677046	CCACTCAGCACATAATTA
chr16	87262984	87262985	chr16:87262985:A:C	rs140671646	A	C	A	Msx3.mouse_homeodomain_1	7	1	-	8.000452792258269	7.9505828489233314	ACATTTATGGAACAATTA
chr16	87386775	87386776	chr16:87386776:G:A	rs750957	G	A	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr16	87515402	87515403	chr16:87515403:G:C	rs6540053	G	C	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr16	87515417	87515418	chr16:87515418:A:G	rs111717344	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr16	87581918	87581919	chr16:87581919:G:C	rs4843635	G	C	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr16	88488498	88488499	chr16:88488499:T:C	rs17782553	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	88488520	88488521	chr16:88488521:A:C	chr16:88488521:A:C	A	C	A	Msx3.mouse_homeodomain_1	10	1	-	8.199614508840153	7.616594861878798	GCGATTAACATCAAATAA
chr16	88632696	88632697	chr16:88632697:T:A	rs8047524	T	A	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr16	88703256	88703257	chr16:88703257:T:G	rs4489989	T	G	T	Msx3.mouse_homeodomain_1	10	1	-	8.177517625235861	6.639973801387026	GCAATTATGCAACAATCG
chr16	88929023	88929024	chr16:88929024:G:A	rs7197177	G	A	g	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr16	88929028	88929029	chr16:88929029:T:C	rs539636	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr16	88929071	88929072	chr16:88929072:G:A	rs491224	G	A	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr16	89014509	89014510	chr16:89014510:G:T	rs13336078	G	T	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr16	89021296	89021297	chr16:89021297:G:A	rs78208831	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr16	89108522	89108523	chr16:89108523:T:C	rs72817445	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	9.680127859607754	2.772662622683749	TGAATTAAGTAGCCATTA
chr17	284205	284206	chr17:284206:C:T	rs148928921	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr17	551066	551067	chr17:551067:C:T	rs72808268	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr17	991590	991591	chr17:991591:G:A	rs112173523	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr17	1112913	1112914	chr17:1112914:G:T	rs12938684	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	6.755663069092505	5.130898190819058	CCAATCAGCAAGCATTTG
chr17	1112977	1112978	chr17:1112978:T:G	rs4395131	T	G	t	Msx3.mouse_homeodomain_1	14	1	+	6.755663069092505	6.494329201418911	CCAATCAGCAAGCATTTG
chr17	1113038	1113039	chr17:1113039:T:G	rs12936734	T	G	t	Msx3.mouse_homeodomain_1	14	1	+	6.755663069092505	6.494329201418911	CCAATCAGCAAGCATTTG
chr17	1113048	1113049	chr17:1113049:G:A	rs2018163	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr17	1135021	1135022	chr17:1135022:C:A	rs73975647	C	A	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr17	1230115	1230116	chr17:1230116:C:T	rs66765552	C	T	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr17	1242104	1242105	chr17:1242105:T:C	rs28437134	T	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr17	1316390	1316391	chr17:1316391:A:G	rs67356431	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	11.883529583967427	5.7849839040982936	GCAATTGGAATGAAATTA
chr17	1329593	1329594	chr17:1329594:A:C	rs4790561	A	C	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr17	1708250	1708251	chr17:1708251:A:C	rs4790810	A	C	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr17	2416013	2416014	chr17:2416014:A:G	rs76220209	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr17	2489537	2489538	chr17:2489538:G:A	rs72805763	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	10.545926137903361	9.100803474336878	TCTATTAAATGGCGATTA
chr17	2871663	2871664	chr17:2871664:T:C	rs12325719	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.799032531968126	3.210938312944973	CCAATTGAACCCCAATGA
chr17	2871693	2871694	chr17:2871694:A:G	rs59809910	A	G	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr17	3037288	3037289	chr17:3037289:G:A	rs3195014	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	3533971	3533972	chr17:3533972:C:T	rs2102213	C	T	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	3643891	3643892	chr17:3643892:T:C	rs224499	T	C	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr17	3660995	3660996	chr17:3660996:T:C	rs1048647	T	C	t	Msx3.mouse_homeodomain_1	2	1	-	6.411116174012156	3.894247546075078	CCAATTCAGAACCAATCT
chr17	3660999	3661000	chr17:3661000:T:C	rs1048648	T	C	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	4136660	4136661	chr17:4136661:T:C	rs8070665	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr17	4272550	4272551	chr17:4272551:C:T	rs1437808	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr17	4310287	4310288	chr17:4310288:C:T	rs17764245	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr17	4469420	4469421	chr17:4469421:T:C	rs7215249	T	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr17	4555913	4555914	chr17:4555914:C:A	rs3760194	C	A	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr17	4858466	4858467	chr17:4858467:A:T	rs6502825	A	T	A	Msx3.mouse_homeodomain_1	16	1	-	9.587717265970841	5.702879338447782	AAAATTAAATTTAAATTA
chr17	5221581	5221582	chr17:5221582:C:T	rs2257308	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr17	5326159	5326160	chr17:5326160:C:T	rs56960906	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr17	5365416	5365417	chr17:5365417:A:G	rs2309381	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	5384697	5384698	chr17:5384698:G:A	rs1058381	G	A	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr17	5460302	5460303	chr17:5460303:T:C	rs9912028	T	C	t	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr17	5460331	5460332	chr17:5460332:C:T	rs11868567	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	6.674277959951125	5.565768404786381	GCCATTAAGAAGTACTTT
chr17	5513851	5513852	chr17:5513852:G:A	rs76349026	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	5770159	5770160	chr17:5770160:C:A	rs73346921	C	A	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr17	5875244	5875245	chr17:5875245:C:T	rs888328	C	T	T	Msx3.mouse_homeodomain_1	0	1	-	6.381499557310062	5.272990002145318	GCAATCAGAGGCGAATCA
chr17	5906052	5906053	chr17:5906053:G:C	rs74702959	G	C	G	Msx3.mouse_homeodomain_1	2	1	-	6.564213805416914	6.429932618950561	CCCATTGTTAAGCAATTC
chr17	6147168	6147169	chr17:6147169:A:G	rs7405550	A	G	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr17	6204471	6204472	chr17:6204472:C:A	rs17201584	C	A	c	Msx3.mouse_homeodomain_1	12	1	+	6.531705487077624	4.0203967273088	CCAGTAAAATCCCCATTA
chr17	6276021	6276022	chr17:6276022:A:G	rs936731	A	G	a	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr17	6341169	6341170	chr17:6341170:C:A	rs12942806	C	A	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	6386154	6386155	chr17:6386155:C:T	rs11078625	C	T	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr17	6386200	6386201	chr17:6386201:C:T	rs11652354	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr17	8058307	8058308	chr17:8058308:C:T	rs189412909	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr17	8058841	8058842	chr17:8058842:A:G	rs9911432	A	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr17	8131309	8131310	chr17:8131310:C:G	rs62063070	C	G	c	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr17	8606092	8606093	chr17:8606093:A:T	rs12449581	A	T	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr17	8960211	8960212	chr17:8960212:T:C	rs9901782	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	6.721970430191559	0.6234247503224255	GCACTCAAAAAGCCCTTA
chr17	9056488	9056489	chr17:9056489:A:T	rs12937286	A	T	T	Msx3.mouse_homeodomain_1	16	1	-	5.532751318506967	1.6479133909839083	CCCATTAGCCACCAACTA
chr17	9409799	9409800	chr17:9409800:A:G	rs144581334	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr17	9808707	9808708	chr17:9808708:G:A	rs72822122	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr17	9810187	9810188	chr17:9810188:G:A	rs4791360	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	9811168	9811169	chr17:9811169:T:C	rs17207801	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	6.228471483256414	1.6403772642332632	TCAACAAGAAGCCAATTA
chr17	9966523	9966524	chr17:9966524:A:G	rs9902829	A	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	10001755	10001756	chr17:10001756:G:A	rs3786083	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr17	10023834	10023835	chr17:10023835:A:T	rs1986266	A	T	T	Msx3.mouse_homeodomain_1	14	1	+	10.25274709597875	5.925986744629194	ACAATTAAAAAAAAATTT
chr17	10181899	10181900	chr17:10181900:G:C	rs12942658	G	C	G	Msx3.mouse_homeodomain_1	9	1	+	10.32031738886274	9.954631077304555	CTCATTATAGGGTAATTA
chr17	10181920	10181921	chr17:10181921:A:G	rs9897300	A	G	a	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr17	10200412	10200413	chr17:10200413:A:T	rs4791938	A	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	10200453	10200454	chr17:10200454:A:C	rs62058039	A	C	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr17	10996031	10996032	chr17:10996032:G:T	rs16944045	G	T	T	Msx3.mouse_homeodomain_1	11	1	-	5.788510864979868	4.506094299094194	CCAATTCTAGCCCAATTC
chr17	11266455	11266456	chr17:11266456:G:A	rs17510939	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr17	11363855	11363856	chr17:11363856:G:A	rs12952164	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	11429477	11429478	chr17:11429478:C:G	rs2908954	C	G	C	Msx3.mouse_homeodomain_1	0	1	+	7.493113859014765	7.860465368889376	CCCATTAAAATTCAAATA
chr17	11690966	11690967	chr17:11690967:T:C	rs7207235	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr17	11824177	11824178	chr17:11824178:C:T	rs11867425	C	T	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	12121029	12121030	chr17:12121030:C:G	rs2108496	C	G	C	Msx3.mouse_homeodomain_1	10	1	-	10.046064216066029	9.585111563153667	GCTATTAATAGGCAATCA
chr17	12257753	12257754	chr17:12257754:T:G	rs8074366	T	G	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr17	12391598	12391599	chr17:12391599:A:C	rs2529714	A	C	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr17	12909951	12909952	chr17:12909952:A:G	rs73296315	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr17	13119097	13119098	chr17:13119098:A:G	rs7207964	A	G	A	Msx3.mouse_homeodomain_1	10	1	-	8.9876625294056	7.943690229531888	CTCATTGTATTGTAATTA
chr17	13158867	13158868	chr17:13158868:G:A	rs7226005	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	8.19876866906878	6.488538250085074	CTAATTAAAACCTACTTG
chr17	13206014	13206015	chr17:13206015:T:C	rs9895611	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	13456701	13456702	chr17:13456702:C:T	rs8081514	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	13590705	13590706	chr17:13590706:A:G	rs8065492	A	G	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr17	13592431	13592432	chr17:13592432:C:T	rs3785690	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr17	13592457	13592458	chr17:13592458:A:C	rs3785689	A	C	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr17	13761338	13761339	chr17:13761339:G:A	rs16948430	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	8.531035658589197	9.607626829525675	GCAATTAGTCGACTATTA
chr17	13896599	13896600	chr17:13896600:C:T	rs1468515	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr17	14018108	14018109	chr17:14018109:C:A	rs10852819	C	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr17	14038234	14038235	chr17:14038235:A:G	rs55637791	A	G	a	Msx3.mouse_homeodomain_1	9	1	-	8.284573310980566	7.392484278909316	TAGATTATATGACAATTA
chr17	14197920	14197921	chr17:14197921:G:A	rs9901316	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr17	14298834	14298835	chr17:14298835:T:C	rs142514375	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	11.31607620118756	7.346645224818681	CTAATAAGTGAGCAATTA
chr17	14331259	14331260	chr17:14331260:G:A	rs9893188	G	A	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr17	14769742	14769743	chr17:14769743:G:A	rs1860379	G	A	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr17	14777212	14777213	chr17:14777213:G:A	rs17708352	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr17	14882219	14882220	chr17:14882220:A:G	rs72823764	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.4972835500514785	1.398737870182345	ACAATGACATGGAAATTA
chr17	15049680	15049681	chr17:15049681:T:C	rs16950913	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr17	15152221	15152222	chr17:15152222:T:C	rs974138	T	C	t	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	15244905	15244906	chr17:15244906:A:G	rs230916	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	8.193802811664142	7.253258819277996	ATAATTAAAACCAATTTA
chr17	15349903	15349904	chr17:15349904:C:T	rs400706	C	T	T	Msx3.mouse_homeodomain_1	7	1	+	8.111878656153364	8.441819608869462	GCAATCACTGAACAATTT
chr17	16381518	16381519	chr17:16381519:C:T	rs186272754	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr17	16383447	16383448	chr17:16383448:C:T	rs117233862	C	T	c	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr17	16392635	16392636	chr17:16392636:C:T	rs9891709	C	T	c	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr17	16609360	16609361	chr17:16609361:G:A	rs6502515	G	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	16653193	16653194	chr17:16653194:T:C	rs7222875	T	C	.	Msx3.mouse_homeodomain_1	4	1	+	10.49660311973961	4.398057439870476	GTGATTAAAAGGTGATTA
chr17	16885536	16885537	chr17:16885537:G:C	rs10521322	G	C	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr17	17021090	17021091	chr17:17021091:A:G	rs73979046	A	G	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr17	17172352	17172353	chr17:17172353:C:G	rs17794784	C	G	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr17	17238152	17238153	chr17:17238153:C:T	chr17:17238153:C:T	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr17	17354531	17354532	chr17:17354532:G:A	rs242249	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr17	17408799	17408800	chr17:17408800:G:A	rs537261706	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr17	17752493	17752494	chr17:17752494:G:A	rs570780179	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr17	17752493	17752494	chr17:17752494:G:T	chr17:17752494:G:T	G	T	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr17	17822286	17822287	chr17:17822287:C:T	rs60067423	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr17	17930804	17930805	chr17:17930805:A:G	rs8068820	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	8.566053987973248	7.489462817036773	GCAACTAGACACTAATTA
chr17	18004631	18004632	chr17:18004632:C:T	rs147402856	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr17	18569787	18569788	chr17:18569788:G:A	rs193075226	G	A	-	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr17	18697686	18697687	chr17:18697687:A:G	rs4924909	A	G	.	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	18774015	18774016	chr17:18774016:G:A	rs4244595	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr17	18949864	18949865	chr17:18949865:A:G	rs1634418	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.459303305241565	3.4898723288726883	ACAATTCTGAAGCACTTA
chr17	19361197	19361198	chr17:19361198:A:C	rs6587071	A	C	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr17	19701481	19701482	chr17:19701482:T:C	rs35244631	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr17	19728601	19728602	chr17:19728602:C:T	rs7214841	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	7.173964937535076	5.728842273968593	TTCATTAGCCCCCGATTA
chr17	20082727	20082728	chr17:20082728:T:C	rs7210439	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	10.07826213577004	7.510102538586836	GTAATTAAGGTGCAATGA
chr17	20310857	20310858	chr17:20310858:G:T	rs8068720	G	T	.	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	20916681	20916682	chr17:20916682:T:C	rs8067705	T	C	.	Msx3.mouse_homeodomain_1	17	1	-	7.3545343391609554	4.786374741977753	GAGATTATACGCAAATTA
chr17	21162229	21162230	chr17:21162230:G:A	rs748325388	G	A	g	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr17	21278523	21278524	chr17:21278524:G:T	chr17:21278524:G:T	G	T	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr17	21515370	21515371	chr17:21515371:G:C	rs62050499	G	C	C	Msx3.mouse_homeodomain_1	5	1	+	7.239292071513872	9.288888106470537	TCAATGAATTGCCAATCA
chr17	21515372	21515373	chr17:21515373:A:G	rs151278677	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	7.239292071513872	6.129476534190277	TCAATGAATTGCCAATCA
chr17	21756361	21756362	chr17:21756362:T:C	rs1202365474	T	C	.	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	27295084	27295085	chr17:27295085:G:T	rs12306	G	T	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr17	27538561	27538562	chr17:27538562:G:A	rs16966193	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	6.483603123939472	7.4901524567846804	CCCATTCCGGATCAATTA
chr17	27747964	27747965	chr17:27747965:A:G	rs4796017	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	7.502730451576649	6.4961811187314416	CACATTAGATCCAAATTA
chr17	27794000	27794001	chr17:27794001:C:A	rs531702176	C	A	C	Msx3.mouse_homeodomain_1	10	1	+	7.03243861021983	8.56998243406867	CCCATAAAATCGCAATAA
chr17	28166687	28166688	chr17:28166688:T:G	rs376837570	T	G	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr17	28243238	28243239	chr17:28243239:C:T	rs74989617	C	T	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr17	28326275	28326276	chr17:28326276:G:A	rs188189867	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr17	28394875	28394876	chr17:28394876:G:A	rs1128161	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr17	29257299	29257300	chr17:29257300:G:A	rs186118391	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	29323013	29323014	chr17:29323014:G:T	rs553771539	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr17	29389922	29389923	chr17:29389923:G:A	rs115680333	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr17	29439133	29439134	chr17:29439134:G:A	rs4289056	G	A	g	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr17	29649578	29649579	chr17:29649579:A:G	rs3110494	A	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr17	29661319	29661320	chr17:29661320:A:G	rs73987118	A	G	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr17	30022447	30022448	chr17:30022448:T:C	rs9911794	T	C	C	Msx3.mouse_homeodomain_1	1	1	+	10.02053088310701	10.868373753987697	ATAATTACAAAGCAATGA
chr17	30022457	30022458	chr17:30022458:G:A	rs12936302	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	10.02053088310701	8.823579857931602	ATAATTACAAAGCAATGA
chr17	30188413	30188414	chr17:30188414:A:G	rs556657059	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	30188460	30188461	chr17:30188461:A:G	rs1906451	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr17	30733151	30733152	chr17:30733152:A:G	rs56095789	A	G	.	Msx3.mouse_homeodomain_1	0	1	-	12.265136171635966	13.088726915896146	TCTATTAAGTTCCAATTA
chr17	31274398	31274399	chr17:31274399:A:C	rs113359320	A	C	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr17	31274430	31274431	chr17:31274431:C:A	rs1025313407	C	A	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr17	31537796	31537797	chr17:31537797:C:A	rs75629221	C	A	C	Msx3.mouse_homeodomain_1	11	1	+	6.253414625225775	4.9709980593401015	GCCATTAAATACCAACTG
chr17	31537814	31537815	chr17:31537815:C:T	rs111605159	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr17	31696307	31696308	chr17:31696308:T:C	rs7219892	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	31696311	31696312	chr17:31696312:A:G	rs1265403321	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr17	31739485	31739486	chr17:31739486:A:C	rs11868181	A	C	A	Msx3.mouse_homeodomain_1	9	1	+	8.27397302217992	6.967742718235592	CTCATTTAAATCCAATTG
chr17	31921113	31921114	chr17:31921114:T:A	rs72821952	T	A	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr17	32021748	32021749	chr17:32021749:C:A	rs34912557	C	A	.	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr17	32081967	32081968	chr17:32081968:C:G	rs41290970	C	G	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr17	32516654	32516655	chr17:32516655:C:T	rs2905171	C	T	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr17	32626595	32626596	chr17:32626596:C:T	rs321156	C	T	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr17	32626603	32626604	chr17:32626604:C:T	rs189690903	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	6.59715531301898	8.654429491925177	CCAATAAGCAAACGATTT
chr17	32755553	32755554	chr17:32755554:C:T	rs145290255	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	33168004	33168005	chr17:33168005:T:C	rs150850467	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr17	33260888	33260889	chr17:33260889:G:A	rs880305	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr17	33355831	33355832	chr17:33355832:T:A	rs950537	T	A	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr17	33427596	33427597	chr17:33427597:T:C	rs4795783	T	C	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr17	33561772	33561773	chr17:33561773:C:T	rs8080786	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr17	33646828	33646829	chr17:33646829:C:T	rs2067752	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr17	33740353	33740354	chr17:33740354:C:T	rs112986467	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr17	33751751	33751752	chr17:33751752:G:A	rs116238854	G	A	G	Msx3.mouse_homeodomain_1	7	1	+	8.646371643295922	9.756187180619516	TGACTTAGAGTCCAATTA
chr17	33888699	33888700	chr17:33888700:C:T	rs66635051	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr17	33888714	33888715	chr17:33888715:A:G	rs67361277	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	16.749780082815995	12.780349106447119	GCAATTAAAATACAATTA
chr17	33941822	33941823	chr17:33941823:A:G	rs17783779	A	G	G	Msx3.mouse_homeodomain_1	10	1	+	6.108073339754573	5.031482168818099	GAAATCAGAAAGCACTTG
chr17	33941844	33941845	chr17:33941845:A:C	rs62059921	A	C	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr17	33986978	33986979	chr17:33986979:T:C	rs454204	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	6.495256717011722	0.3967110371425908	GCCATAGAATAGCAATAA
chr17	33989448	33989449	chr17:33989449:G:A	rs13380869	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr17	34385386	34385387	chr17:34385387:A:T	rs60011577	A	T	A	Msx3.mouse_homeodomain_1	17	1	+	6.7520478229601	3.3812616270813023	ACCATGACCAAGTAATTA
chr17	34487863	34487864	chr17:34487864:G:A	rs150489084	G	A	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr17	34670980	34670981	chr17:34670981:T:G	rs4795019	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr17	34670982	34670983	chr17:34670983:G:A	rs6416978	G	A	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr17	34877531	34877532	chr17:34877532:C:G	rs1482100	C	G	C	Msx3.mouse_homeodomain_1	10	1	-	5.856735009097398	5.395782356185037	AGCATTGCCAGGCAATTA
chr17	35075432	35075433	chr17:35075433:G:A	rs7222146	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	35251221	35251222	chr17:35251222:C:A	rs35435622	C	A	C	Msx3.mouse_homeodomain_1	10	1	+	6.170352518247944	7.70789634209678	ACCATGAAAACCCCATTA
chr17	35253260	35253261	chr17:35253261:G:T	rs4796066	G	T	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr17	35294827	35294828	chr17:35294828:G:A	rs772114	G	A	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr17	35521574	35521575	chr17:35521575:T:C	rs6505479	T	C	t	Msx3.mouse_homeodomain_1	15	1	+	8.535982012498778	1.6285167755747747	ACCATCAAAACCCAATTG
chr17	35540986	35540987	chr17:35540987:C:T	rs111426977	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	35546752	35546753	chr17:35546753:A:G	rs7221322	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	8.197262545232388	1.2897973083083811	TCAATTAAACTTTTATTA
chr17	35781207	35781208	chr17:35781208:C:A	rs113961817	C	A	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	36001217	36001218	chr17:36001218:C:T	rs77865185	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	8.050046980727508	9.159862518051103	CCCATTTGGGGCCAATTA
chr17	36613406	36613407	chr17:36613407:G:C	rs17693404	G	C	G	Msx3.mouse_homeodomain_1	1	1	-	7.0490476607068215	3.784698803678505	ACCATTAATCAGGGATTA
chr17	36722291	36722292	chr17:36722292:A:G	rs779308850	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	10.514059479613515	9.621970447542264	ACGCTTAAGTAGCAATTA
chr17	36808026	36808027	chr17:36808027:C:G	rs1693280	C	G	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr17	36939900	36939901	chr17:36939901:C:A	rs8075069	C	A	C	Msx3.mouse_homeodomain_1	13	1	-	10.58339076624328	8.458256482309508	GCACTTATTTTCCGATTA
chr17	37132757	37132758	chr17:37132758:G:A	rs7208415	G	A	G	Msx3.mouse_homeodomain_1	16	1	+	6.408600049435768	7.597294898022038	CTAATAATGGACCAATGA
chr17	37461826	37461827	chr17:37461827:G:C	rs853192	G	C	C	Msx3.mouse_homeodomain_1	1	1	-	7.218641511025905	3.954292653997588	TCAATCAATAACCACTCA
chr17	37501026	37501027	chr17:37501027:A:G	rs853215	A	G	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr17	37789476	37789477	chr17:37789477:A:T	rs8077142	A	T	T	Msx3.mouse_homeodomain_1	5	1	-	8.327659118958628	5.50625707180225	TCACTTACCCACAAATTA
chr17	37842765	37842766	chr17:37842766:G:A	rs117808249	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr17	39119439	39119440	chr17:39119440:T:G	rs566538498	T	G	T	Msx3.mouse_homeodomain_1	8	1	+	12.119079688572569	12.149800828884914	ACAATTATTTGTCAATTA
chr17	39632689	39632690	chr17:39632690:C:T	rs967798776	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	8.059023815876696	6.950514260711951	GCAATAAAAGCACAATAA
chr17	39666561	39666562	chr17:39666562:C:G	rs45593534	C	G	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr17	39763823	39763824	chr17:39763824:A:T	rs35708591	A	T	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr17	39819839	39819840	chr17:39819840:T:A	rs114211283	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	10.146062270388198	4.067148851030341	CTAATTAAAAAAAAATTT
chr17	39910766	39910767	chr17:39910767:C:T	rs4795400	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	5.400604470194131	4.552761599313447	GCAATCAAAAGGCCCTCA
chr17	40124662	40124663	chr17:40124663:C:T	rs117374443	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	6.5558151299279706	7.562364462773178	GTAATTACGGTACCATCA
chr17	40304166	40304167	chr17:40304167:C:T	rs574689592	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr17	40388371	40388372	chr17:40388372:G:A	rs2715555	G	A	G	Msx3.mouse_homeodomain_1	10	1	-	8.889616053917223	9.933588353790938	GGCATTAAGACCTAATTA
chr17	40567962	40567963	chr17:40567963:A:G	rs62066595	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr17	40607613	40607614	chr17:40607614:T:A	rs803123	T	A	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr17	40609583	40609584	chr17:40609584:G:A	rs776658730	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr17	40903448	40903449	chr17:40903449:G:A	rs111834516	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr17	41060702	41060703	chr17:41060703:G:T	rs17490724	G	T	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr17	41251321	41251322	chr17:41251322:C:A	rs975250	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr17	41673476	41673477	chr17:41673477:G:A	rs78724635	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr17	42067397	42067398	chr17:42067398:G:C	rs933181305	G	C	G	Msx3.mouse_homeodomain_1	0	1	-	7.109243593049448	7.476595102924059	CAAATCACCAAGCACTTA
chr17	42067411	42067412	chr17:42067412:T:A	rs560184267	T	A	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr17	42067414	42067415	chr17:42067415:T:G	rs1076188	T	G	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr17	42248393	42248394	chr17:42248394:C:T	rs16967609	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr17	42655322	42655323	chr17:42655323:G:T	rs7217821	G	T	G	Msx3.mouse_homeodomain_1	17	1	+	8.164626814728276	7.362000216032682	CTAATAAACCAGTAATTG
chr17	42844458	42844459	chr17:42844459:G:C	rs35244031	G	C	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr17	43125377	43125378	chr17:43125378:G:T	rs938827457	G	T	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	43125425	43125426	chr17:43125426:A:G	chr17:43125426:A:G	A	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr17	43125453	43125454	chr17:43125454:G:A	chr17:43125454:G:A	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr17	43318584	43318585	chr17:43318585:C:T	rs564601714	C	T	-	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr17	43468807	43468808	chr17:43468808:C:T	rs35546612	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr17	43823615	43823616	chr17:43823616:G:A	rs8065043	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	43907529	43907530	chr17:43907530:G:A	rs190514312	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr17	44128985	44128986	chr17:44128986:C:T	rs138215964	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr17	44204073	44204074	chr17:44204074:A:G	rs73316180	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr17	44492977	44492978	chr17:44492978:G:T	rs11867692	G	T	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr17	44556418	44556419	chr17:44556419:A:C	chr17:44556419:A:C	A	C	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	44638691	44638692	chr17:44638692:G:T	rs8078419	G	T	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	44697289	44697290	chr17:44697290:C:G	rs112750668	C	G	c	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	44697324	44697325	chr17:44697325:T:C	rs9902879	T	C	c	Msx3.mouse_homeodomain_1	16	1	+	7.214997921192504	4.090048767598651	CCAACTATATACCAATTT
chr17	44697337	44697338	chr17:44697338:A:C	rs112203204	A	C	a	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr17	45007086	45007087	chr17:45007087:G:A	rs75353403	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr17	45009814	45009815	chr17:45009815:G:A	rs35103016	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr17	45021000	45021001	chr17:45021001:G:C	rs139342077	G	C	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr17	45062866	45062867	chr17:45062867:T:G	rs77182336	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr17	45141309	45141310	chr17:45141310:G:A	rs60289499	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	45190728	45190729	chr17:45190729:G:A	rs1345616179	G	A	G	Msx3.mouse_homeodomain_1	17	1	-	7.4965176648179845	8.712588050065696	GTAATAAAATGACAATTC
chr17	45393393	45393394	chr17:45393394:C:T	rs732589	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr17	45593329	45593330	chr17:45593330:G:C	rs1706731	G	C	g	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr17	45640525	45640526	chr17:45640526:A:G	rs1181442387	A	G	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr17	45700636	45700637	chr17:45700637:T:A	rs62056875	T	A	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr17	45730954	45730955	chr17:45730955:G:A	rs62054389	G	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr17	45734851	45734852	chr17:45734852:C:T	rs1526126	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	45924012	45924013	chr17:45924013:C:T	rs17564493	C	T	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	45934382	45934383	chr17:45934383:A:G	rs17564948	A	G	a	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr17	46023539	46023540	chr17:46023540:A:G	rs62062295	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.36267823420182	3.774584015178669	CCAATTGGAAGACAATAA
chr17	46023549	46023550	chr17:46023550:C:T	rs62062296	C	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr17	46137019	46137020	chr17:46137020:A:G	rs62063209	A	G	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	46275254	46275255	chr17:46275255:A:G	rs2696537	A	G	.	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	46275272	46275273	chr17:46275273:G:A	rs36039990	G	A	.	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr17	46285769	46285770	chr17:46285770:G:C	rs62073169	G	C	.	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr17	46285814	46285815	chr17:46285815:T:C	rs778213121	T	C	.	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr17	46286968	46286969	chr17:46286969:G:A	rs578102530	G	A	.	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr17	46292053	46292054	chr17:46292054:A:G	rs7209589	A	G	.	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr17	46929840	46929841	chr17:46929841:C:G	rs75921757	C	G	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	46929846	46929847	chr17:46929847:A:G	rs2072317	A	G	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr17	47102553	47102554	chr17:47102554:G:A	rs7503625	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr17	47162281	47162282	chr17:47162282:C:T	rs918811281	C	T	c	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr17	47266573	47266574	chr17:47266574:G:T	rs11658221	G	T	T	Msx3.mouse_homeodomain_1	1	1	-	9.14651013884189	6.446220761901425	ACAATTTTAATCCAATCA
chr17	47315859	47315860	chr17:47315860:G:A	rs57172453	G	A	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr17	47315869	47315870	chr17:47315870:C:T	rs57180192	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	8.555196409302718	7.731605665042541	CCAATTACAAGCAGATTG
chr17	47660334	47660335	chr17:47660335:A:G	rs7219303	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr17	47797966	47797967	chr17:47797967:C:A	rs548243360	C	A	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr17	47982334	47982335	chr17:47982335:T:C	rs2597176	T	C	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	47987842	47987843	chr17:47987843:C:A	rs1001769816	C	A	C	Msx3.mouse_homeodomain_1	11	1	-	7.172227284546034	5.547462406272588	CAGATTAAGCAGCAATTT
chr17	48003674	48003675	chr17:48003675:G:T	rs757351	G	T	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	48428324	48428325	chr17:48428325:C:T	rs77463459	C	T	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr17	48428333	48428334	chr17:48428334:A:G	rs7211712	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.236986366656378	4.2675553902875	GCAATTAATCTCCATTCA
chr17	48627173	48627174	chr17:48627174:G:T	rs2303487	G	T	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr17	48698978	48698979	chr17:48698979:A:G	rs4581744	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	10.70043819142209	8.132278594238889	GCCATTATCATGCCATTA
chr17	49206452	49206453	chr17:49206453:C:T	rs55634267	C	T	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr17	49329979	49329980	chr17:49329980:T:A	rs9891264	T	A	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr17	49390034	49390035	chr17:49390035:C:T	rs62077693	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr17	49673829	49673830	chr17:49673830:A:G	rs367689201	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr17	49866623	49866624	chr17:49866624:A:G	rs413250	A	G	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr17	50235336	50235337	chr17:50235337:T:A	rs9908723	T	A	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	50361427	50361428	chr17:50361428:G:A	rs144749304	G	A	g	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr17	50472095	50472096	chr17:50472096:C:T	rs9896780	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr17	50484685	50484686	chr17:50484686:T:G	rs72834177	T	G	G	Msx3.mouse_homeodomain_1	17	1	-	6.090514527977196	1.5036579468506877	CCAATTTCAAGCCCATCA
chr17	50507706	50507707	chr17:50507707:T:G	rs117790709	T	G	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr17	50672160	50672161	chr17:50672161:A:T	rs8075406	A	T	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	50866947	50866948	chr17:50866948:C:T	rs1477569080	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr17	50866949	50866950	chr17:50866950:G:A	chr17:50866950:G:A	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr17	50866983	50866984	chr17:50866984:C:A	rs12949115	C	A	C	Msx3.mouse_homeodomain_1	0	1	-	11.919984257742644	10.729042003607852	GTGATTAATATTCAATTA
chr17	50866998	50866999	chr17:50866999:C:A	chr17:50866999:C:A	C	A	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	50868056	50868057	chr17:50868057:G:T	rs149089074	G	T	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr17	50868104	50868105	chr17:50868105:A:G	chr17:50868105:A:G	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr17	50890013	50890014	chr17:50890014:A:G	rs8073538	A	G	G	Msx3.mouse_homeodomain_1	17	1	+	6.447332716239033	3.8791731190558307	CCTACTAACACCCAATTA
chr17	51538183	51538184	chr17:51538184:G:T	rs17585461	G	T	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr17	51559907	51559908	chr17:51559908:C:T	rs76864272	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	6.12936501309763	5.281522142216945	GCAATTGGCTTGCACTTT
chr17	51675015	51675016	chr17:51675016:T:C	rs2014184	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	52194313	52194314	chr17:52194314:G:A	rs12601870	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	7.968861660414688	10.026135839320883	ATAATTAAATACCGCTTG
chr17	52297411	52297412	chr17:52297412:G:A	rs781182798	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr17	52339219	52339220	chr17:52339220:G:A	rs1386271	G	A	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr17	52378999	52379000	chr17:52379000:C:A	rs4297754	C	A	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr17	52470646	52470647	chr17:52470647:T:G	rs11650893	T	G	T	Msx3.mouse_homeodomain_1	7	1	-	9.272070956309832	7.882184409605078	ACTATCAAAAAGAAATTA
chr17	52492647	52492648	chr17:52492648:G:A	rs1424329	G	A	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr17	52932443	52932444	chr17:52932444:T:G	rs1398508	T	G	G	Msx3.mouse_homeodomain_1	11	1	-	6.894506281843291	8.176922847728964	ACAATTAGCAAACCTTTA
chr17	52969037	52969038	chr17:52969038:G:C	rs9303612	G	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr17	53237045	53237046	chr17:53237046:T:G	rs9898437	T	G	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr17	53432239	53432240	chr17:53432240:C:A	rs11079080	C	A	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr17	53432247	53432248	chr17:53432248:C:T	rs11079081	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr17	53499907	53499908	chr17:53499908:A:G	rs12602794	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.138842512109199	2.550748293086049	CTCATTAAAAATCAAATA
chr17	53631095	53631096	chr17:53631096:G:A	rs8082376	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	53631141	53631142	chr17:53631142:T:C	rs2940643	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr17	54523336	54523337	chr17:54523337:G:A	rs1835219	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr17	54694569	54694570	chr17:54694570:C:T	rs12449886	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	9.225611602328389	7.51538118334468	GTAGTTATTGACTAATTA
chr17	54864992	54864993	chr17:54864993:T:A	rs79327757	T	A	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr17	54886695	54886696	chr17:54886696:T:A	rs10515083	T	A	T	Msx3.mouse_homeodomain_1	10	1	-	8.263913626746735	7.770342102771612	TTAATTACAGATCTATTA
chr17	54904491	54904492	chr17:54904492:C:T	rs12949718	C	T	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	54933393	54933394	chr17:54933394:A:G	rs9891704	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr17	54971562	54971563	chr17:54971563:G:A	rs9902687	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	55202071	55202072	chr17:55202072:A:G	rs7211784	A	G	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr17	55210965	55210966	chr17:55210966:C:T	rs7211981	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr17	55284426	55284427	chr17:55284427:C:T	rs59688920	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	55284459	55284460	chr17:55284460:A:G	rs116001454	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.393448973741621	2.805354754718471	ACGGTTAACTTTCAATTA
chr17	55284476	55284477	chr17:55284477:T:G	rs1477141	T	G	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr17	55314846	55314847	chr17:55314847:A:T	rs34186098	A	T	A	Msx3.mouse_homeodomain_1	4	1	-	7.245172205823862	0.3401506600877826	CCAATAACTAGCCAGTTA
chr17	55436575	55436576	chr17:55436576:T:C	rs7211802	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	7.19449548791527	4.626335890732068	ATAATTAGGCCGTCATTA
chr17	55568878	55568879	chr17:55568879:T:C	rs17819558	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	9.806041127316707	7.413055384806204	ACACTTGAGAAACAATTA
chr17	55598726	55598727	chr17:55598727:C:T	rs7216150	C	T	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	55636102	55636103	chr17:55636103:T:C	rs16956153	T	C	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr17	55661481	55661482	chr17:55661482:A:G	rs9911930	A	G	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr17	55693785	55693786	chr17:55693786:T:G	rs7209942	T	G	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr17	55842979	55842980	chr17:55842980:C:G	rs6504999	C	G	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr17	56180878	56180879	chr17:56180879:A:C	rs6505044	A	C	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr17	56608990	56608991	chr17:56608991:G:A	rs2159226	G	A	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr17	56619680	56619681	chr17:56619681:G:A	rs28667571	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr17	56652840	56652841	chr17:56652841:A:C	rs28548718	A	C	-	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr17	56687844	56687845	chr17:56687845:T:C	rs9652851	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr17	56875182	56875183	chr17:56875183:G:C	rs11870932	G	C	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr17	56953596	56953597	chr17:56953597:T:C	rs73311876	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	56966645	56966646	chr17:56966646:G:A	rs732646	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	8.087246345035776	7.239403474155092	ACAATAGGCTCGCAATTA
chr17	57291577	57291578	chr17:57291578:G:A	rs57937729	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr17	57342001	57342002	chr17:57342002:G:A	rs4573986	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr17	57457078	57457079	chr17:57457079:G:A	rs2099915	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	9.680737453125097	8.832894582244414	CCTCTTGAAAACCAATTA
chr17	57458929	57458930	chr17:57458930:A:G	rs17834337	A	G	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr17	57465966	57465967	chr17:57465967:T:C	rs576838461	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	9.165297222348906	7.108023043442712	GCCATTAGGTGCCAATTT
chr17	57495866	57495867	chr17:57495867:T:C	rs999630	T	C	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	57623594	57623595	chr17:57623595:T:G	rs7342828	T	G	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr17	57632018	57632019	chr17:57632019:A:G	rs3760161	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	13.5411005928875	11.09902336595594	TCAATTAAAAAAAAATTA
chr17	57699989	57699990	chr17:57699990:G:A	rs551254628	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr17	57701748	57701749	chr17:57701749:G:A	rs111587989	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr17	58666693	58666694	chr17:58666694:T:C	rs144426810	T	C	t	Msx3.mouse_homeodomain_1	4	1	+	6.875112364311627	0.7765666844424921	GTAATTATGAGGTACTTG
chr17	58991684	58991685	chr17:58991685:T:G	rs190724306	T	G	T	Msx3.mouse_homeodomain_1	13	1	+	8.156145862552265	10.281280146486036	ACCATTACACACCTATTA
chr17	59195028	59195029	chr17:59195029:G:A	rs143343968	G	A	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr17	59325375	59325376	chr17:59325376:G:A	rs188233794	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr17	59372376	59372377	chr17:59372377:G:A	rs115878524	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	59643411	59643412	chr17:59643412:T:C	rs1264970974	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr17	59746323	59746324	chr17:59746324:G:A	rs6503939	G	A	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr17	59832940	59832941	chr17:59832941:C:T	rs1208297987	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	6.954258363435824	7.960807696281033	GCCCTTAAGCTCTGATTA
chr17	59854952	59854953	chr17:59854953:T:A	rs1292066	T	A	A	Msx3.mouse_homeodomain_1	14	1	-	10.99390514126888	6.667144789919325	CCAATTAAAAAAAAATTT
chr17	59963977	59963978	chr17:59963978:C:G	rs59767604	C	G	c	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr17	60249686	60249687	chr17:60249687:A:G	rs78812326	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr17	60427235	60427236	chr17:60427236:G:A	rs6503968	G	A	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr17	60468561	60468562	chr17:60468562:T:C	rs73326465	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr17	60605466	60605467	chr17:60605467:A:G	chr17:60605467:A:G	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr17	61251734	61251735	chr17:61251735:A:G	rs142989187	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	6.415964108758549	5.306148571434954	CCCATAAAAAAGCAATAG
chr17	61252071	61252072	chr17:61252072:A:G	rs776117767	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr17	61252096	61252097	chr17:61252097:C:T	rs138957669	C	T	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr17	61314770	61314771	chr17:61314771:C:T	chr17:61314771:C:T	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr17	61403734	61403735	chr17:61403735:T:C	rs28696765	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.8107944397043605	1.7122487598352278	AGAATTACCTTCCAATCA
chr17	61486877	61486878	chr17:61486878:A:G	chr17:61486878:A:G	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr17	61504901	61504902	chr17:61504902:A:G	rs77184725	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr17	61574750	61574751	chr17:61574751:C:T	rs17530941	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.37772560492889	5.667495185945181	CAAATAAAAAGCCTATTA
chr17	61617276	61617277	chr17:61617277:T:C	rs2040609	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr17	61754890	61754891	chr17:61754891:C:T	rs2890021	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	8.406464474834817	9.450436774708532	CTCATTTAACCGCAATTA
chr17	61886417	61886418	chr17:61886418:A:C	rs4968455	A	C	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr17	62424325	62424326	chr17:62424326:C:T	rs767146643	C	T	c	Msx3.mouse_homeodomain_1	9	1	-	5.8011711804268815	6.741715172813026	CCAATGAGAGCCCATTTA
chr17	62424348	62424349	chr17:62424349:C:T	rs1441044256	C	T	c	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr17	62710973	62710974	chr17:62710974:T:C	rs58571166	T	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr17	62767413	62767414	chr17:62767414:C:G	rs17684769	C	G	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr17	62955873	62955874	chr17:62955874:A:G	rs74451022	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	9.815425777452173	10.923935332616914	ACAATTAGAAGGTAATAA
chr17	63672705	63672706	chr17:63672706:T:C	rs11079508	T	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr17	64146070	64146071	chr17:64146071:G:C	rs2291675	G	C	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr17	64172541	64172542	chr17:64172542:C:A	rs9916486	C	A	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr17	64334095	64334096	chr17:64334096:G:A	rs12452419	G	A	g	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	64334097	64334098	chr17:64334098:A:C	rs56774006	A	C	a	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr17	64407078	64407079	chr17:64407079:G:T	rs954713932	G	T	g	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr17	64478321	64478322	chr17:64478322:A:G	rs7213085	A	G	A	Msx3.mouse_homeodomain_1	11	1	+	9.664806065422308	10.861757090597717	GCAATCCAAGAACAATTA
chr17	64498688	64498689	chr17:64498689:T:C	rs75545109	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr17	64498890	64498891	chr17:64498891:C:T	rs10512502	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr17	64706933	64706934	chr17:64706934:T:C	rs75334281	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.554023754184626	1.4554780743154936	GCACTTAATAAATATTTA
chr17	64920335	64920336	chr17:64920336:A:G	rs565537224	A	G	.	Msx3.mouse_homeodomain_1	3	1	+	11.073986084106902	7.104555107738027	ACAATTGCAAACAAATTA
chr17	64922040	64922041	chr17:64922041:A:G	rs112435472	A	G	.	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	64992286	64992287	chr17:64992287:G:T	rs62073286	G	T	T	Msx3.mouse_homeodomain_1	12	1	-	6.971029530168139	4.459720770399315	CAAATGAACAACCAATCA
chr17	65067332	65067333	chr17:65067333:A:C	rs11651495	A	C	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	65178061	65178062	chr17:65178062:T:C	chr17:65178062:T:C	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr17	65479544	65479545	chr17:65479545:T:C	rs374027906	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	6.974761070166809	0.8762153902976768	ATCATTGGGAAGCAATTG
chr17	65479558	65479559	chr17:65479559:G:A	rs12601204	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	6.263964544177067	5.440373799916885	CCAATTGCTTCCCAATGA
chr17	65679340	65679341	chr17:65679341:T:A	rs232102	T	A	A	Msx3.mouse_homeodomain_1	4	1	+	7.702166871670559	0.7971453259344781	GTAATTAAACTGTGGTTA
chr17	66328233	66328234	chr17:66328234:A:G	rs7210846	A	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr17	66417265	66417266	chr17:66417266:A:T	rs2319523	A	T	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr17	66440861	66440862	chr17:66440862:T:C	rs79732617	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.594113791385822	1.4955681115166892	TCAATGAAAAGTAAATTA
chr17	66521624	66521625	chr17:66521625:A:G	rs7218008	A	G	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr17	66534401	66534402	chr17:66534402:A:T	rs7221053	A	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr17	66570799	66570800	chr17:66570800:G:A	rs72845926	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr17	66581113	66581114	chr17:66581114:T:C	rs73342564	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	7.539459709880257	5.097382482948701	GCACTCATAAAACAATTT
chr17	66855336	66855337	chr17:66855337:C:G	rs7208882	C	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr17	66903240	66903241	chr17:66903241:C:T	rs11653993	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	8.020358311642969	10.077632490549167	TTAATAATTTGCCGATTA
chr17	67075013	67075014	chr17:67075014:G:A	rs143754492	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr17	67260114	67260115	chr17:67260115:C:G	rs56176735	C	G	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr17	67328899	67328900	chr17:67328900:T:C	rs4455006	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr17	67334421	67334422	chr17:67334422:A:G	rs12944890	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	67682825	67682826	chr17:67682826:T:C	rs2706669	T	C	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr17	67717125	67717126	chr17:67717126:G:T	rs3760219	G	T	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr17	67829131	67829132	chr17:67829132:T:C	rs12603589	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	12.559252734560772	9.991093137377568	TCCATCAAAAACCAATTA
chr17	67891779	67891780	chr17:67891780:A:G	rs8079754	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	68035082	68035083	chr17:68035083:T:C	rs75236169	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr17	68103360	68103361	chr17:68103361:G:A	rs138176074	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	7.259760952378024	5.5495305333943135	TCCATTAAGAACCACTCA
chr17	68181942	68181943	chr17:68181943:G:C	rs12943596	G	C	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr17	68181959	68181960	chr17:68181960:C:T	rs35121941	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr17	68381544	68381545	chr17:68381545:G:A	rs62085873	G	A	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	68388369	68388370	chr17:68388370:C:G	rs74721637	C	G	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr17	68391493	68391494	chr17:68391494:G:A	rs72841855	G	A	A	Msx3.mouse_homeodomain_1	1	1	-	8.626644569939867	7.778801699059179	CCAATTATAGAGCACTAA
chr17	68665366	68665367	chr17:68665367:C:T	rs17673884	C	T	T	Msx3.mouse_homeodomain_1	3	1	-	6.236572035639433	10.206003012008312	CCAGTTAAGAGACAATTC
chr17	68792305	68792306	chr17:68792306:A:T	rs8078115	A	T	A	Msx3.mouse_homeodomain_1	11	1	+	7.136954012628901	6.709140159530862	GCAATTGTTATACAATGA
chr17	68800784	68800785	chr17:68800785:G:T	rs8065322	G	T	T	Msx3.mouse_homeodomain_1	8	1	+	7.255245940850407	7.224524800538066	GCAATGATGATGCTATTA
chr17	68807892	68807893	chr17:68807893:A:T	rs993497	A	T	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	68808280	68808281	chr17:68808281:G:A	rs73357090	G	A	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr17	68808311	68808312	chr17:68808312:A:G	rs12453422	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	5.966071758733359	1.3779775397102099	GGAAGTGGAAAGCAATTA
chr17	68832414	68832415	chr17:68832415:A:G	rs12601591	A	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr17	69476871	69476872	chr17:69476872:A:G	rs2028049	A	G	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr17	69730382	69730383	chr17:69730383:G:A	rs1119752	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr17	69878875	69878876	chr17:69878876:A:G	rs10512531	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	6.75911142835066	5.818567435964515	CCCATTGGAAAACTATTA
chr17	69896776	69896777	chr17:69896777:A:G	rs1469135373	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	69978940	69978941	chr17:69978941:T:C	rs557218330	T	C	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr17	70073207	70073208	chr17:70073208:T:C	rs8070382	T	C	C	Msx3.mouse_homeodomain_1	1	1	+	8.786848950374168	9.634691821254854	ATAATTATTTATCACTTA
chr17	70138618	70138619	chr17:70138619:G:A	rs758036	G	A	G	Msx3.mouse_homeodomain_1	3	1	-	7.602900458677545	5.355724483062354	TTACTTAGACAGTGATTA
chr17	70172863	70172864	chr17:70172864:A:G	rs9890133	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr17	70405976	70405977	chr17:70405977:C:T	rs376713134	C	T	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr17	70414098	70414099	chr17:70414099:A:G	rs9891615	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.900979842928152	4.312885623905001	GAAATTGAGTTCCAATTG
chr17	70509789	70509790	chr17:70509790:T:G	rs8079431	T	G	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr17	70552664	70552665	chr17:70552665:G:A	rs8075249	G	A	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	70552666	70552667	chr17:70552667:T:G	rs8080759	T	G	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr17	71176560	71176561	chr17:71176561:A:C	rs8079962	A	C	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	71202652	71202653	chr17:71202653:A:C	rs9912404	A	C	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	71260849	71260850	chr17:71260850:A:T	rs142761666	A	T	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr17	71276153	71276154	chr17:71276154:G:A	rs1041960935	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.745580855514316	8.637071300349572	GCAATTAAACTGCATTTG
chr17	71332338	71332339	chr17:71332339:G:C	rs9895642	G	C	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr17	71639919	71639920	chr17:71639920:A:G	rs72841236	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr17	71742042	71742043	chr17:71742043:C:T	rs8066366	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr17	71790801	71790802	chr17:71790802:G:A	rs8080960	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	71793166	71793167	chr17:71793167:G:A	rs8064257	G	A	A	Msx3.mouse_homeodomain_1	10	1	-	6.362294357338588	7.406266657212302	GCACTCAAAGCGCATTTA
chr17	71793194	71793195	chr17:71793195:A:G	rs144243349	A	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr17	71881250	71881251	chr17:71881251:C:T	rs763368	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	71881254	71881255	chr17:71881255:C:G	rs1344021	C	G	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr17	71881277	71881278	chr17:71881278:C:T	rs714731	C	T	T	Msx3.mouse_homeodomain_1	8	1	+	5.542570493129655	5.424866844604659	GCAAATGACGTACAATTA
chr17	72297026	72297027	chr17:72297027:A:T	rs7220467	A	T	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr17	72345221	72345222	chr17:72345222:A:C	rs542425817	A	C	A	Msx3.mouse_homeodomain_1	7	1	-	6.494988378766933	6.445118435431998	GCAATAATATTGCAGTTG
chr17	72453855	72453856	chr17:72453856:T:C	rs12453153	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr17	72638103	72638104	chr17:72638104:G:C	rs4793468	G	C	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr17	72730496	72730497	chr17:72730497:A:G	rs12451419	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr17	72742971	72742972	chr17:72742972:T:C	rs2567471	T	C	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr17	73031403	73031404	chr17:73031404:G:A	rs9912666	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	73519919	73519920	chr17:73519920:C:T	rs12453316	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr17	73519956	73519957	chr17:73519957:C:T	rs12453319	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	73668717	73668718	chr17:73668718:A:G	rs34290789	A	G	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr17	73827816	73827817	chr17:73827817:C:T	rs35554862	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr17	73982981	73982982	chr17:73982982:A:G	rs73353471	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	74017984	74017985	chr17:74017985:T:G	rs185644233	T	G	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr17	74078735	74078736	chr17:74078736:G:A	rs73359390	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	11.516303225321366	10.692712481061186	CGAATTAAAATCCCATTA
chr17	74078746	74078747	chr17:74078747:C:T	rs73359391	C	T	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr17	74168162	74168163	chr17:74168163:A:G	rs9896396	A	G	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr17	74271380	74271381	chr17:74271381:T:C	rs4789050	T	C	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr17	74295589	74295590	chr17:74295590:T:G	rs72848283	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	8.469713800258774	5.585520743781395	GGAATAAAAAAGCAATAA
chr17	74296616	74296617	chr17:74296617:A:G	rs111434543	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	5.7161778795968585	4.709628546751649	GCAATTACACCCTGATGA
chr17	74358898	74358899	chr17:74358899:A:G	rs3760198	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	6.434395106089596	0.33584942622046254	CCCATTGACCAGCAGTTA
chr17	75026986	75026987	chr17:75026987:C:T	rs57981526	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr17	75035056	75035057	chr17:75035057:G:C	rs148808947	G	C	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr17	75035057	75035058	chr17:75035058:C:T	rs114651322	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr17	75035067	75035068	chr17:75035068:T:A	rs545158057	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	8.995927878368867	5.625141682490069	CCAATTTGATGGCCATTA
chr17	75035094	75035095	chr17:75035095:G:A	rs7210163	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr17	75035097	75035098	chr17:75035098:G:A	rs189331088	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr17	75035101	75035102	chr17:75035102:C:T	rs151314504	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr17	75044959	75044960	chr17:75044960:A:C	rs1466681	A	C	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr17	75072286	75072287	chr17:75072287:G:A	rs12453974	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr17	75142416	75142417	chr17:75142417:G:A	rs116871846	G	A	g	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr17	75181600	75181601	chr17:75181601:T:A	rs10401035	T	A	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr17	75689438	75689439	chr17:75689439:G:A	rs73995969	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	75864221	75864222	chr17:75864222:T:C	rs56098714	T	C	c	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	76049059	76049060	chr17:76049060:A:C	rs189640364	A	C	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr17	76092636	76092637	chr17:76092637:C:G	rs2598412	C	G	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr17	76098579	76098580	chr17:76098580:G:T	rs1432983531	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	6.572469698764894	3.8721803218244295	CCAATCAGCCAGTATTTA
chr17	76098582	76098583	chr17:76098583:C:T	rs11656686	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	76212342	76212343	chr17:76212343:G:A	rs9911122	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr17	76234553	76234554	chr17:76234554:T:C	rs7210745	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr17	76448279	76448280	chr17:76448280:G:A	rs35319167	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.16215565150604	7.053646096341297	GCAATTTAGATTCACTTA
chr17	76659975	76659976	chr17:76659976:A:C	rs528731890	A	C	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr17	76659991	76659992	chr17:76659992:G:A	rs145411621	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr17	76754418	76754419	chr17:76754419:G:A	rs237050	G	A	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	76816866	76816867	chr17:76816867:A:G	rs544948329	A	G	a	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr17	76919897	76919898	chr17:76919898:C:A	rs11077877	C	A	C	Msx3.mouse_homeodomain_1	9	1	+	8.371273492056167	9.677503796000499	CCCATTAAACAATAATTT
chr17	77147311	77147312	chr17:77147312:T:C	rs118147433	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	77155356	77155357	chr17:77155357:A:G	rs55972072	A	G	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr17	77155389	77155390	chr17:77155390:C:T	rs62078301	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr17	77212555	77212556	chr17:77212556:G:A	rs9912398	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr17	77222485	77222486	chr17:77222486:T:G	rs16969774	T	G	T	Msx3.mouse_homeodomain_1	16	1	+	6.984510250674879	1.9109774745655508	ACAATGAGCAGCCCATTA
chr17	77505044	77505045	chr17:77505045:G:T	rs8077939	G	T	g	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr17	77555885	77555886	chr17:77555886:G:A	rs142959643	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	77699326	77699327	chr17:77699327:A:G	rs9894103	A	G	a	Msx3.mouse_homeodomain_1	17	1	+	10.3611828810349	7.793023283851697	ATAATTAAAGAGCGATCA
chr17	77716843	77716844	chr17:77716844:C:A	rs10852786	C	A	C	Msx3.mouse_homeodomain_1	0	1	-	9.784689124470269	8.593746870335476	GCATTTAAGAGGTAATTA
chr17	78224926	78224927	chr17:78224927:C:A	rs2661694	C	A	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr17	78624945	78624946	chr17:78624946:G:A	rs7502404	G	A	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr17	78875555	78875556	chr17:78875556:G:T	rs7218237	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	7.458564525719921	5.833799647446475	TTAATTTCAAGGCCATTA
chr17	79074493	79074494	chr17:79074494:G:C	rs148078928	G	C	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr17	79074508	79074509	chr17:79074509:T:C	rs752235311	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr17	79287364	79287365	chr17:79287365:G:A	rs4789883	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr17	79295890	79295891	chr17:79295891:T:C	rs9789067	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr17	79365495	79365496	chr17:79365496:A:G	rs11651690	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	79398118	79398119	chr17:79398119:C:T	rs60772925	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	8.442129469645563	7.594286598764876	GCAATTAGAGCCCAATCT
chr17	79542434	79542435	chr17:79542435:A:G	rs7216806	A	G	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr17	79809957	79809958	chr17:79809958:C:T	rs79206729	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr17	79816335	79816336	chr17:79816336:T:C	rs2587507	T	C	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr17	79950725	79950726	chr17:79950726:T:G	rs73423907	T	G	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr17	79979556	79979557	chr17:79979557:C:T	rs3934513	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	8.615254964727875	7.170132301161391	TCAATTAGTATCCAAATA
chr17	80060393	80060394	chr17:80060394:T:A	rs6565637	T	A	A	Msx3.mouse_homeodomain_1	5	1	+	8.890852493453803	6.069450446297422	ATAATTAAAAAAAAATAA
chr17	80060395	80060396	chr17:80060396:A:T	rs8068206	A	T	a	Msx3.mouse_homeodomain_1	7	1	+	8.890852493453803	7.830906899465144	ATAATTAAAAAAAAATAA
chr17	80123000	80123001	chr17:80123001:T:G	rs12950757	T	G	t	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr17	80132585	80132586	chr17:80132586:C:G	rs4889827	C	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr17	80575436	80575437	chr17:80575437:A:G	rs76584516	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	11.821682356788529	5.7231366769193945	CTGATCAAAATGCAATTA
chr17	80648016	80648017	chr17:80648017:G:A	rs8076974	G	A	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	80648134	80648135	chr17:80648135:T:C	rs190972123	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	7.788074107922363	5.345996880990806	TACATTAAAATGCAATAA
chr17	80751965	80751966	chr17:80751966:A:G	rs9902639	A	G	G	Msx3.mouse_homeodomain_1	3	1	+	7.584881095515377	3.615450119146499	TCCATTACAGCCGAATTA
chr17	80772883	80772884	chr17:80772884:G:A	rs12947507	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr17	80786440	80786441	chr17:80786441:T:C	rs79071924	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.456818747430844	4.868724528407696	ACAATGAAGAACAAATTA
chr17	80799196	80799197	chr17:80799197:C:G	rs9897026	C	G	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr17	80939265	80939266	chr17:80939266:A:G	rs6565499	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	9.349923940230447	6.833055312293369	TCAATTAAATCCTAGTTA
chr17	80978669	80978670	chr17:80978670:T:C	rs1399571	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr17	81201057	81201058	chr17:81201058:T:A	rs75058047	T	A	T	Msx3.mouse_homeodomain_1	16	1	+	7.7519254477672535	3.867087520244194	TCTATTGTATACAAATTA
chr17	81201063	81201064	chr17:81201064:A:C	rs2725418	A	C	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr17	81251824	81251825	chr17:81251825:A:T	rs139633771	A	T	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr17	81251857	81251858	chr17:81251858:C:T	rs118099334	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr17	81584519	81584520	chr17:81584520:T:C	rs79459378	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	8.586230199616146	1.6787649626921426	GCACTTGCTTTACAATTA
chr17	82041348	82041349	chr17:82041349:A:G	rs72861774	A	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr17	82121080	82121081	chr17:82121081:C:T	rs62080003	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr17	82223042	82223043	chr17:82223043:C:G	rs72854779	C	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr17	82565605	82565606	chr17:82565606:C:A	rs560511431	C	A	.	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr17	82669932	82669933	chr17:82669933:G:T	rs62079744	G	T	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr17	82747693	82747694	chr17:82747694:T:C	rs2251989	T	C	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr17	82981140	82981141	chr17:82981141:G:A	rs9905027	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr17	83089761	83089762	chr17:83089762:G:A	rs35610241	G	A	g	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr17	83105941	83105942	chr17:83105942:C:T	rs28459602	C	T	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr17	83106372	83106373	chr17:83106373:G:A	rs28626243	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr17	83185957	83185958	chr17:83185958:T:A	rs12939623	T	A	g	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr17	83185957	83185958	chr17:83185958:T:G	chr17:83185958:T:G	T	G	g	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr17	83185979	83185980	chr17:83185980:A:G	rs12940383	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	7.911415402887043	5.469338175955485	CTAATTAGCTAGGAATTT
chr18	392794	392795	chr18:392795:G:A	rs9964252	G	A	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr18	428534	428535	chr18:428535:T:C	rs9960856	T	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr18	476874	476875	chr18:476875:G:A	rs28418336	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr18	682334	682335	chr18:682335:C:A	rs143987220	C	A	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr18	1215563	1215564	chr18:1215564:G:A	rs1493235	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr18	1952818	1952819	chr18:1952819:C:T	rs4797060	C	T	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr18	2658323	2658324	chr18:2658324:A:G	rs610840	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	8.954550163794046	9.80239303467473	GTAATAAAAGGCCAATAA
chr18	3101098	3101099	chr18:3101099:G:A	rs66878562	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	9.593110886605391	10.533654878991534	AAAATTATCGTTCAATTA
chr18	3175381	3175382	chr18:3175382:C:G	rs11877597	C	G	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr18	3251993	3251994	chr18:3251994:A:G	rs1662344	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr18	3251995	3251996	chr18:3251996:A:G	rs1662343	A	G	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr18	3279688	3279689	chr18:3279689:T:C	rs60336569	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr18	3332668	3332669	chr18:3332669:A:G	rs16944710	A	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr18	3605359	3605360	chr18:3605360:C:T	rs114742784	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr18	3625651	3625652	chr18:3625652:G:A	rs79740357	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.226708526533184	7.7815858629667	TCACTTAGATTGCAATCA
chr18	3655392	3655393	chr18:3655393:A:G	rs1675240	A	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr18	3675923	3675924	chr18:3675924:A:G	rs7232608	A	G	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr18	3675932	3675933	chr18:3675933:C:G	rs4619493	C	G	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr18	3679272	3679273	chr18:3679273:T:C	rs35370721	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	9.478277205800222	8.401686034863744	AGAATTAAGGAATAATTA
chr18	3725188	3725189	chr18:3725189:G:C	rs4797120	G	C	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr18	3742712	3742713	chr18:3742713:C:A	rs11873533	C	A	A	Msx3.mouse_homeodomain_1	6	1	+	7.062050477373435	11.307066283845597	GACATTCGAGAGCAATTA
chr18	3796162	3796163	chr18:3796163:G:A	rs6506136	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr18	3885558	3885559	chr18:3885559:T:C	rs992131	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr18	3898791	3898792	chr18:3898792:C:A	rs3850809	C	A	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr18	3898793	3898794	chr18:3898794:A:G	rs62083564	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr18	4179844	4179845	chr18:4179845:C:A	rs6506192	C	A	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr18	4639068	4639069	chr18:4639069:G:C	rs1001892	G	C	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr18	4677932	4677933	chr18:4677933:T:C	rs948264	T	C	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr18	4809233	4809234	chr18:4809234:T:C	rs9675675	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr18	4851670	4851671	chr18:4851671:C:A	chr18:4851671:C:A	C	A	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr18	5674741	5674742	chr18:5674742:C:T	rs59892835	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr18	5674774	5674775	chr18:5674775:C:A	rs1295830434	C	A	c	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	5978725	5978726	chr18:5978726:G:A	rs498274	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr18	6055672	6055673	chr18:6055673:C:T	rs588339	C	T	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr18	6315883	6315884	chr18:6315884:A:G	rs73387678	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr18	6315908	6315909	chr18:6315909:T:C	rs73387682	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.850556234025188	4.88112525765631	AGAATTAATACATAATTA
chr18	6315931	6315932	chr18:6315932:A:C	rs73387684	A	C	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr18	6657899	6657900	chr18:6657900:G:A	rs1941487	G	A	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr18	7177488	7177489	chr18:7177489:A:G	rs532098447	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr18	7569395	7569396	chr18:7569396:C:T	rs73941929	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr18	7766249	7766250	chr18:7766250:C:T	rs117908165	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	7.513676744616819	6.665833873736134	CCGATCAGGATCCAATCA
chr18	7817758	7817759	chr18:7817759:C:T	rs77963515	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr18	7890129	7890130	chr18:7890130:A:G	rs7234763	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr18	8413904	8413905	chr18:8413905:G:A	rs602212	G	A	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr18	8606190	8606191	chr18:8606191:T:C	rs11659485	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr18	8845224	8845225	chr18:8845225:G:T	rs690089	G	T	T	Msx3.mouse_homeodomain_1	11	1	-	7.109596901247798	5.827180335362124	CCCATTAAGCCCTAATTT
chr18	9024639	9024640	chr18:9024640:T:A	rs35772957	T	A	T	Msx3.mouse_homeodomain_1	13	1	-	7.57931395524197	3.396905492402006	CCTATTAAACAGTAATTC
chr18	9096994	9096995	chr18:9096995:A:G	rs11872404	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	10.015745655856772	3.917199975987637	GTAATTAAACAACAATGA
chr18	9097858	9097859	chr18:9097859:G:A	rs72942538	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr18	9145526	9145527	chr18:9145527:G:C	rs80261592	G	C	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	9469186	9469187	chr18:9469187:A:G	rs1252819759	A	G	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr18	9649474	9649475	chr18:9649475:G:A	rs62080346	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr18	9777043	9777044	chr18:9777044:T:A	rs7228583	T	A	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr18	9906657	9906658	chr18:9906658:T:C	rs3888655	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr18	10024149	10024150	chr18:10024150:G:A	rs8092859	G	A	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr18	10131177	10131178	chr18:10131178:T:A	rs118035538	T	A	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr18	10148694	10148695	chr18:10148695:T:C	rs146127622	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr18	10148724	10148725	chr18:10148725:G:C	rs1893211	G	C	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr18	10401472	10401473	chr18:10401473:G:A	rs73401140	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	10473728	10473729	chr18:10473729:A:G	rs646410	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr18	10843484	10843485	chr18:10843485:C:T	rs1683378	C	T	T	Msx3.mouse_homeodomain_1	0	1	-	11.200308391873474	10.09179883670873	GAAATTAATAGCAAATTA
chr18	10927626	10927627	chr18:10927627:G:A	rs776085411	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr18	11679011	11679012	chr18:11679012:A:T	rs4531809	A	T	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr18	11969057	11969058	chr18:11969058:C:T	rs117004964	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr18	11969093	11969094	chr18:11969094:G:A	rs111283819	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr18	12079818	12079819	chr18:12079819:A:G	rs138342683	A	G	.	Msx3.mouse_homeodomain_1	15	1	-	9.094389339880582	2.1869241029565756	GTAATTCTCAGACAATTA
chr18	12221249	12221250	chr18:12221250:A:G	rs189472617	A	G	a	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr18	12309781	12309782	chr18:12309782:C:T	rs74887793	C	T	N	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr18	13284031	13284032	chr18:13284032:C:T	rs34381968	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr18	13287578	13287579	chr18:13287579:A:G	rs11659728	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr18	13287583	13287584	chr18:13287584:G:T	rs11659806	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr18	13399956	13399957	chr18:13399957:A:G	rs60754013	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr18	13471880	13471881	chr18:13471881:T:C	rs4797779	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr18	13562008	13562009	chr18:13562009:T:C	rs1290369	T	C	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr18	13584928	13584929	chr18:13584929:G:A	rs111485469	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr18	13614013	13614014	chr18:13614014:T:G	rs144857336	T	G	T	Msx3.mouse_homeodomain_1	3	1	-	10.220086920767006	7.339912556234107	ACAATTATTCAAAAATTA
chr18	13684911	13684912	chr18:13684912:T:C	rs1615908	T	C	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr18	13725433	13725434	chr18:13725434:A:G	rs1284200	A	G	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr18	14025984	14025985	chr18:14025985:T:G	rs35947160	T	G	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr18	22227107	22227108	chr18:22227108:T:G	rs12709669	T	G	G	Msx3.mouse_homeodomain_1	0	1	-	9.247754752342821	9.988912797632956	ACAATTATTAACAACTTA
chr18	22505457	22505458	chr18:22505458:T:C	rs74985175	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr18	23191679	23191680	chr18:23191680:A:T	rs2337030	A	T	A	Msx3.mouse_homeodomain_1	17	1	-	9.818627682156253	13.189413878035051	TAAATTAAAAACTAATTT
chr18	23992648	23992649	chr18:23992649:C:T	chr18:23992649:C:T	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr18	24673265	24673266	chr18:24673266:G:A	rs75551307	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr18	24868065	24868066	chr18:24868066:G:T	rs9675660	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	9.088164128010312	7.463399249736866	GCACTGAGCAAGCAATTA
chr18	25125639	25125640	chr18:25125640:T:C	rs72887750	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr18	25344526	25344527	chr18:25344527:A:G	rs6508364	A	G	G	Msx3.mouse_homeodomain_1	13	1	+	9.966485737428211	7.909211558522016	TTAATTGAAATGGAATTA
chr18	25457636	25457637	chr18:25457637:A:G	rs7235769	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr18	25708063	25708064	chr18:25708064:A:G	rs117317476	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.555551039028735	5.586120062659858	AACATTAACTACTAATTA
chr18	25854162	25854163	chr18:25854163:C:T	rs1786739	C	T	C	Msx3.mouse_homeodomain_1	14	1	-	8.382767167081584	12.970861386104735	TCAATTAAATTGCAGTTT
chr18	26181043	26181044	chr18:26181044:G:A	rs4800724	G	A	A	Msx3.mouse_homeodomain_1	8	1	-	7.524510926670932	7.406807278145936	CCATTTAACGAGCACTTA
chr18	26191773	26191774	chr18:26191774:C:T	rs17189032	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	10.047427125329602	8.938917570164858	GCTATAAGACAGCAATTA
chr18	26226115	26226116	chr18:26226116:T:A	rs77106401	T	A	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr18	26498195	26498196	chr18:26498196:G:A	rs17604918	G	A	g	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr18	26654834	26654835	chr18:26654835:C:A	rs1370903	C	A	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr18	26711965	26711966	chr18:26711966:C:T	rs1817000	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.917838299937834	7.720887274762425	GCAATGATTACGTAATTA
chr18	26863063	26863064	chr18:26863064:C:G	rs112481323	C	G	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr18	27130308	27130309	chr18:27130309:A:G	rs2114471	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.61380916696719	4.025714947944039	CTAATGACCTAGTAATTA
chr18	27562081	27562082	chr18:27562082:C:T	rs1362729	C	T	C	Msx3.mouse_homeodomain_1	3	1	+	8.341729257403415	6.0945532817882215	TCACTTACAAGGCACTTA
chr18	27750959	27750960	chr18:27750960:T:C	rs2714366	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr18	27750991	27750992	chr18:27750992:G:C	rs2714365	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr18	27844556	27844557	chr18:27844557:G:C	rs4401120	G	C	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr18	28188728	28188729	chr18:28188729:G:A	rs192716017	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr18	28268026	28268027	chr18:28268027:A:C	chr18:28268027:A:C	A	C	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr18	29212044	29212045	chr18:29212045:A:G	rs1399659	A	G	-	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr18	30047875	30047876	chr18:30047876:T:G	rs8098102	T	G	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr18	30248729	30248730	chr18:30248730:G:T	rs9952408	G	T	G	Msx3.mouse_homeodomain_1	8	1	+	7.653839991137175	7.623118850824832	GCTATTGAGAAGCTATTA
chr18	30344698	30344699	chr18:30344699:A:T	rs8092085	A	T	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr18	30559250	30559251	chr18:30559251:C:A	rs2847415	C	A	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr18	30887142	30887143	chr18:30887143:G:A	rs9957591	G	A	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr18	31100407	31100408	chr18:31100408:A:G	rs1658125	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr18	31211609	31211610	chr18:31211610:T:C	rs2920002	T	C	C	Msx3.mouse_homeodomain_1	7	1	-	10.82725389792494	9.717438360601346	GCAATCAAGTACCAATAA
chr18	31511937	31511938	chr18:31511938:G:A	rs2704054	G	A	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr18	31687767	31687768	chr18:31687768:T:C	rs73954675	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr18	31756249	31756250	chr18:31756250:G:A	rs56352737	G	A	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr18	32085191	32085192	chr18:32085192:G:A	chr18:32085192:G:A	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr18	32351182	32351183	chr18:32351183:G:T	rs10502590	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	10.799233177281174	8.09894380034071	GCAATTGAATGAAAATTA
chr18	32449229	32449230	chr18:32449230:A:G	rs8094711	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr18	32460453	32460454	chr18:32460454:A:C	rs72935553	A	C	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr18	32595644	32595645	chr18:32595645:A:G	rs9635884	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr18	32761961	32761962	chr18:32761962:A:G	rs12606442	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.992659737020979	5.023228760652099	CAAATTACATGGGAATTA
chr18	33580028	33580029	chr18:33580029:C:A	rs9966506	C	A	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr18	34353034	34353035	chr18:34353035:A:G	rs77165039	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr18	34624668	34624669	chr18:34624669:C:T	rs9973194	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr18	35524019	35524020	chr18:35524020:T:G	rs3914055	T	G	T	Msx3.mouse_homeodomain_1	8	1	-	10.363887223711	9.444320399078446	TGAATTAGAAAGAAATTA
chr18	36405812	36405813	chr18:36405813:G:A	rs59593666	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr18	36415624	36415625	chr18:36415625:G:A	rs17565409	G	A	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr18	36457903	36457904	chr18:36457904:A:G	rs72891761	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr18	36870178	36870179	chr18:36870179:C:T	rs2007524	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr18	38440037	38440038	chr18:38440038:T:C	rs7243119	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	9.365750248589162	2.458285011665155	GCCATCAAATAGCAATAA
chr18	39354590	39354591	chr18:39354591:T:C	rs17608892	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr18	39359666	39359667	chr18:39359667:C:T	rs7233383	C	T	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr18	39919415	39919416	chr18:39919416:A:G	rs7242943	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	7.393789309450946	6.387239976605739	ATAACTATAGGCCAATTA
chr18	39996113	39996114	chr18:39996114:T:C	rs16972551	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	10.578074082719361	8.520799903813167	TGCATTAGAAACCAATTA
chr18	40423445	40423446	chr18:40423446:G:A	rs4799541	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr18	40614005	40614006	chr18:40614006:G:A	rs1561206	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	11.244736190458234	9.799613526891754	GGAATAAGAAAGCAATTA
chr18	40674090	40674091	chr18:40674091:C:T	rs7232542	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr18	40933047	40933048	chr18:40933048:A:G	rs4890471	A	G	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr18	41071266	41071267	chr18:41071267:T:C	rs72906870	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	7.739017608925946	6.798473616539801	CCAATTAGTACACCATTG
chr18	41699898	41699899	chr18:41699899:C:T	rs16975198	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr18	41699930	41699931	chr18:41699931:G:T	rs76210344	G	T	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr18	42275165	42275166	chr18:42275166:C:T	rs12458223	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr18	42275209	42275210	chr18:42275210:A:C	rs1026596	A	C	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr18	42330626	42330627	chr18:42330627:G:T	rs8096564	G	T	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr18	42341050	42341051	chr18:42341051:A:G	rs391148	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	7.857922445739317	3.269828226716167	GCAATATGAGTTCAATTA
chr18	42446521	42446522	chr18:42446522:G:A	rs140460751	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr18	42575823	42575824	chr18:42575824:C:G	rs3924664	C	G	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	42586896	42586897	chr18:42586897:T:G	rs7229368	T	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr18	42586897	42586898	chr18:42586898:T:G	rs79001050	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	9.755869477589073	5.169012896462563	GCCATGAAATAGTAATTA
chr18	43130147	43130148	chr18:43130148:A:G	rs7244636	A	G	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr18	43188343	43188344	chr18:43188344:A:T	rs59499656	A	T	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr18	43694030	43694031	chr18:43694031:A:G	rs7239913	A	G	a	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr18	43794680	43794681	chr18:43794681:G:A	rs9952707	G	A	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr18	43794724	43794725	chr18:43794725:C:T	rs151114119	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr18	44514405	44514406	chr18:44514406:G:A	rs4581798	G	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr18	44514442	44514443	chr18:44514443:C:T	rs4405635	C	T	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr18	44731736	44731737	chr18:44731737:T:C	rs148851173	T	C	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr18	45078677	45078678	chr18:45078678:A:G	rs72898831	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	10.941147814512432	6.9717168381435535	CTAATTATAATCTAATTT
chr18	45728923	45728924	chr18:45728924:C:G	rs9967412	C	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr18	45958184	45958185	chr18:45958185:A:T	rs61680317	A	T	A	Msx3.mouse_homeodomain_1	12	1	+	8.262458554903752	9.328644651106096	GAAATTAAATGCAACTTA
chr18	46052514	46052515	chr18:46052515:A:C	rs9950343	A	C	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr18	46662281	46662282	chr18:46662282:A:G	rs1017780	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr18	47392955	47392956	chr18:47392956:T:C	rs1893784	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.548829906653297	1.450284226784163	CCTATTATGCTGTGATTA
chr18	47395218	47395219	chr18:47395219:A:C	rs62095689	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	7.459077476187791	0.5516122392637857	GCACTCAGTAAGCACTTA
chr18	47551973	47551974	chr18:47551974:T:C	rs2063327	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	10.564505523000811	4.465959843131676	CCAATTACCTGAAAATTA
chr18	48010768	48010769	chr18:48010769:A:C	rs72916093	A	C	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr18	48366541	48366542	chr18:48366542:T:C	rs11664552	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr18	48707695	48707696	chr18:48707696:C:T	rs2086597	C	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr18	48987821	48987822	chr18:48987822:G:A	rs2635509	G	A	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr18	49251140	49251141	chr18:49251141:G:A	rs9947456	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr18	49461269	49461270	chr18:49461270:C:T	rs16950548	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr18	49690513	49690514	chr18:49690514:G:T	rs62101784	G	T	T	Msx3.mouse_homeodomain_1	12	1	-	9.61220805652486	7.100899296756036	ATGATTACATTGCGATTA
chr18	49751974	49751975	chr18:49751975:G:A	rs2040293	G	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr18	49967343	49967344	chr18:49967344:A:C	chr18:49967344:A:C	A	C	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr18	50083880	50083881	chr18:50083881:G:A	rs17802069	G	A	A	Msx3.mouse_homeodomain_1	0	1	+	10.554295993729529	9.445786438564785	GCAGTTAAATGCAAATTA
chr18	50312869	50312870	chr18:50312870:A:G	rs9949024	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.201833491171552	1.2943682542475474	TCGGTTAGTTAGCAATTA
chr18	50561871	50561872	chr18:50561872:C:G	rs4939988	C	G	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr18	50757803	50757804	chr18:50757804:T:C	rs17735708	T	C	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr18	51041128	51041129	chr18:51041129:A:G	rs148945169	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	10.790204250378821	4.69165857050969	CCAGTTAGGAAACAATTA
chr18	52403950	52403951	chr18:52403951:G:A	rs3862679	G	A	A	Msx3.mouse_homeodomain_1	0	1	+	8.081618342612767	6.973108787448022	GCAATTAGTAAGCATTAA
chr18	52403969	52403970	chr18:52403970:C:A	rs3862680	C	A	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr18	52508972	52508973	chr18:52508973:A:G	rs1145259	A	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr18	52832738	52832739	chr18:52832739:C:T	rs9948149	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.160881135503587	9.237472306440061	CCAATAAAAGGGCAATGA
chr18	53305433	53305434	chr18:53305434:C:T	rs1431194	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr18	54217662	54217663	chr18:54217663:C:A	rs115999076	C	A	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr18	54257677	54257678	chr18:54257678:G:C	rs2849232	G	C	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr18	54257693	54257694	chr18:54257694:T:A	rs55671046	T	A	T	Msx3.mouse_homeodomain_1	10	1	+	10.127218517901436	10.62079004187656	TTAATTAATTTGTCATTA
chr18	54626659	54626660	chr18:54626660:T:C	rs7230591	T	C	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	54659984	54659985	chr18:54659985:G:T	rs1451939	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr18	54786523	54786524	chr18:54786524:G:A	rs6566848	G	A	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr18	55138644	55138645	chr18:55138645:G:A	rs10502995	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr18	55300647	55300648	chr18:55300648:T:C	chr18:55300648:T:C	T	C	t	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr18	55300673	55300674	chr18:55300674:T:C	rs1043384608	T	C	t	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr18	55463398	55463399	chr18:55463399:A:C	rs62091167	A	C	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr18	55585053	55585054	chr18:55585054:G:A	rs12455881	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr18	55692241	55692242	chr18:55692242:C:A	rs12457071	C	A	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr18	55864528	55864529	chr18:55864529:A:T	rs550329580	A	T	A	Msx3.mouse_homeodomain_1	7	1	+	8.571601042726567	7.511655448737909	GCAATTTAAAAAAAATTG
chr18	55949386	55949387	chr18:55949387:C:T	rs17602774	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr18	56036711	56036712	chr18:56036712:C:T	rs1895617	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr18	56038364	56038365	chr18:56038365:C:A	rs4801015	C	A	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr18	56130698	56130699	chr18:56130699:T:A	rs72926493	T	A	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr18	56502505	56502506	chr18:56502506:C:A	rs4800948	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	11.308372266004447	8.79706350623562	AACATTAAAGAGCAATTA
chr18	56574792	56574793	chr18:56574793:A:G	rs602339	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.657695370610405	1.7502301336864003	GCAATAAAAGCCAGATTA
chr18	56911250	56911251	chr18:56911251:C:T	rs10048404	C	T	c	Msx3.mouse_homeodomain_1	0	1	-	8.1212064410931	7.012696885928357	GCAGTAAAGAGGTAATTA
chr18	56992767	56992768	chr18:56992768:C:T	rs1787468	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	6.69756193205435	5.873971187794171	CCAATCAATTCCCAAATA
chr18	56992770	56992771	chr18:56992771:A:G	rs34216187	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	6.69756193205435	2.728130955685472	CCAATCAATTCCCAAATA
chr18	57017033	57017034	chr18:57017034:C:T	rs76532682	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr18	57275020	57275021	chr18:57275021:A:G	rs7243998	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	12.619592486067178	8.031498267044027	ATAATTAAAATGCAATTT
chr18	57455593	57455594	chr18:57455594:G:A	rs634285	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr18	57618765	57618766	chr18:57618766:G:A	rs117679126	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr18	58231092	58231093	chr18:58231093:A:T	rs79752655	A	T	A	Msx3.mouse_homeodomain_1	6	1	+	10.92324391491708	7.330961707804561	AAAATTAAAAAAAAATTA
chr18	58503538	58503539	chr18:58503539:T:A	rs8090520	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr18	58527803	58527804	chr18:58527804:A:G	rs73445154	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	10.863273628838968	6.893842652470091	TCAATTACAATCCAGTTA
chr18	58529845	58529846	chr18:58529846:G:C	rs7236526	G	C	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr18	58912628	58912629	chr18:58912629:C:G	rs57892941	C	G	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr18	59070554	59070555	chr18:59070555:G:A	rs7230169	G	A	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr18	59139296	59139297	chr18:59139297:T:C	rs12605215	T	C	C	Msx3.mouse_homeodomain_1	2	1	+	8.809890702844228	9.582730879586123	TCTATTGCAACCCAATTA
chr18	59270504	59270505	chr18:59270505:T:C	rs1517033	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	8.862932550018979	6.346063922081901	GTAGTAAAAATGTAATTA
chr18	59376865	59376866	chr18:59376866:C:T	rs75684151	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr18	59376879	59376880	chr18:59376880:A:G	rs4940458	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr18	59376892	59376893	chr18:59376893:G:T	rs4940459	G	T	T	Msx3.mouse_homeodomain_1	10	1	+	8.030546979980397	8.61356662694175	ACAATTATATGGCTATTG
chr18	59478697	59478698	chr18:59478698:C:T	rs55962241	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr18	59478698	59478699	chr18:59478699:A:G	rs56359247	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr18	59549787	59549788	chr18:59549788:A:G	rs763466400	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr18	59695067	59695068	chr18:59695068:A:C	rs118134242	A	C	A	Msx3.mouse_homeodomain_1	9	1	+	7.551899330065667	6.245669026121337	GGCATTAACAAACAATCA
chr18	59780183	59780184	chr18:59780184:A:G	rs1791356	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr18	59802005	59802006	chr18:59802006:T:C	rs1788855	T	C	C	Msx3.mouse_homeodomain_1	9	1	+	6.5460900111790705	5.65400097910782	GCCATTATTTGCCCATCA
chr18	59912050	59912051	chr18:59912051:T:A	rs28525512	T	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	60847833	60847834	chr18:60847834:T:G	rs12454608	T	G	T	Msx3.mouse_homeodomain_1	8	1	-	11.116687788951293	10.197120964318739	CTCATTATACACTAATTA
chr18	61615330	61615331	chr18:61615331:C:T	rs9956167	C	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr18	61999094	61999095	chr18:61999095:T:C	rs473828	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	62125465	62125466	chr18:62125466:T:A	rs72941856	T	A	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr18	62332446	62332447	chr18:62332447:A:G	rs4547437	A	G	G	Msx3.mouse_homeodomain_1	5	1	-	8.120156100853738	5.727170358343236	GGAATTGATTCTCAATTA
chr18	62411283	62411284	chr18:62411284:G:A	rs3017350	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr18	62486222	62486223	chr18:62486223:T:G	rs8095251	T	G	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr18	62791180	62791181	chr18:62791181:A:G	rs17070344	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr18	63237884	63237885	chr18:63237885:C:T	rs117215930	C	T	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr18	63570773	63570774	chr18:63570774:T:G	rs58946992	T	G	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr18	63712264	63712265	chr18:63712265:T:C	rs4940594	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr18	63728324	63728325	chr18:63728325:G:T	rs7228368	G	T	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr18	63992862	63992863	chr18:63992863:A:T	chr18:63992863:A:T	A	T	A	Msx3.mouse_homeodomain_1	4	1	-	8.3176180518144	1.4125965060783205	ACAATTACCCGACAATCA
chr18	64098343	64098344	chr18:64098344:G:C	rs2676669	G	C	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr18	64887143	64887144	chr18:64887144:T:A	rs2849342	T	A	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr18	65057476	65057477	chr18:65057477:G:T	rs149379297	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	8.378331324480506	5.86702256471168	CTGATTAACTTCCAGTTA
chr18	65058611	65058612	chr18:65058612:T:C	rs11662565	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr18	65191077	65191078	chr18:65191078:T:G	rs8095768	T	G	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr18	65632661	65632662	chr18:65632662:G:T	rs151097507	G	T	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr18	65724872	65724873	chr18:65724873:C:A	rs72935958	C	A	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr18	65989126	65989127	chr18:65989127:C:A	rs2015321	C	A	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr18	66321410	66321411	chr18:66321411:C:T	rs59348574	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr18	66571335	66571336	chr18:66571336:A:G	rs1943321	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	7.368992017991871	6.476902985920622	CTAATTAACTGGCACTAA
chr18	67217575	67217576	chr18:67217576:T:C	rs77957841	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr18	67280636	67280637	chr18:67280637:T:C	rs12604448	T	C	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr18	67704075	67704076	chr18:67704076:G:A	rs2448737	G	A	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr18	68838188	68838189	chr18:68838189:G:A	rs695141	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr18	69758744	69758745	chr18:69758745:A:G	rs73970258	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.448731441185394	3.860637222162244	GTAATAAGCATCCAATAA
chr18	69830156	69830157	chr18:69830157:C:T	rs9958984	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr18	70660143	70660144	chr18:70660144:G:A	rs4891872	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr18	70934851	70934852	chr18:70934852:T:C	rs35831894	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr18	71083458	71083459	chr18:71083459:T:A	rs73473168	T	A	T	Msx3.mouse_homeodomain_1	10	1	+	7.214528474217839	7.708099998192961	CCCATAAACATCCATTTA
chr18	71083466	71083467	chr18:71083467:G:A	rs112373764	G	A	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr18	71205217	71205218	chr18:71205218:C:T	rs17277846	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr18	71214705	71214706	chr18:71214706:G:T	rs72952989	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	9.134752576886603	6.434463199946137	CCAATTATCAGGAAATTT
chr18	71328114	71328115	chr18:71328115:T:C	rs10514006	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr18	71336728	71336729	chr18:71336729:T:G	rs74609865	T	G	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr18	71462001	71462002	chr18:71462002:G:A	rs1037533	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr18	71730417	71730418	chr18:71730418:G:T	rs9319828	G	T	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr18	71730759	71730760	chr18:71730760:C:G	rs8090460	C	G	G	Msx3.mouse_homeodomain_1	9	1	-	7.735843262142796	7.3701569505846125	TAGATTAACGGCTAATTA
chr18	72181502	72181503	chr18:72181503:C:T	rs559217032	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr18	72336791	72336792	chr18:72336792:A:G	rs7504450	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	10.062134596697351	7.4939749995141485	GTAATTAATTAGCAAATA
chr18	72752334	72752335	chr18:72752335:C:T	rs74632812	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr18	72986168	72986169	chr18:72986169:G:T	rs6566693	G	T	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr18	73281157	73281158	chr18:73281158:G:T	rs4991860	G	T	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr18	73281187	73281188	chr18:73281188:A:G	rs4991859	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.342891958960449	4.754797739937299	GCCATTAGTAAACAATTT
chr18	73402240	73402241	chr18:73402241:T:G	rs75387732	T	G	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr18	73835938	73835939	chr18:73835939:G:A	rs62101688	G	A	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr18	74084122	74084123	chr18:74084123:C:T	rs9945464	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	9.098396929339472	7.388166510355762	TTAATTACTAGCCAATAA
chr18	74150069	74150070	chr18:74150070:T:C	rs56309147	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr18	74295366	74295367	chr18:74295367:C:A	rs1790843	C	A	C	Msx3.mouse_homeodomain_1	2	1	+	7.208436905008743	9.591024346479468	CCCCTTACCATCCCATTA
chr18	74479321	74479322	chr18:74479322:A:T	rs890339	A	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr18	74497961	74497962	chr18:74497962:G:A	rs140699832	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	74542293	74542294	chr18:74542294:T:C	rs9949100	T	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr18	74899283	74899284	chr18:74899284:C:T	rs2404481	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr18	75097292	75097293	chr18:75097293:A:T	rs1828099	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	9.916694582071873	3.8377811627140166	AAAATTAAGAAAAAATTA
chr18	75201964	75201965	chr18:75201965:C:T	rs61910717	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr18	75304770	75304771	chr18:75304771:A:C	rs1946908	A	C	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr18	76505675	76505676	chr18:76505676:G:A	rs75265599	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	8.221495772385953	6.511265353402247	ACCATTCAAAACCAATTG
chr18	76570526	76570527	chr18:76570527:T:C	rs8095535	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr18	76741982	76741983	chr18:76741983:T:C	rs35943772	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr18	76841404	76841405	chr18:76841405:A:G	rs72983343	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr18	77059574	77059575	chr18:77059575:G:A	rs6565927	G	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr18	77212030	77212031	chr18:77212031:C:T	rs113685500	C	T	c	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr18	77223988	77223989	chr18:77223989:A:C	rs72981142	A	C	A	Msx3.mouse_homeodomain_1	10	1	-	8.806171815356858	8.223152168395504	CAAATTTTGTTGCAATTA
chr18	77711381	77711382	chr18:77711382:G:A	rs1995447	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr18	78126665	78126666	chr18:78126666:G:C	rs114679259	G	C	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr18	78364747	78364748	chr18:78364748:G:A	rs10084044	G	A	A	Msx3.mouse_homeodomain_1	4	1	+	6.724052566107873	5.47702027232149	GCAAGTAAGTGGCACTTA
chr18	78448801	78448802	chr18:78448802:A:G	rs57177136	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr18	78635014	78635015	chr18:78635015:A:T	rs72987763	A	T	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr18	78913721	78913722	chr18:78913722:T:G	rs3859333	T	G	T	Msx3.mouse_homeodomain_1	1	1	-	8.72319334113228	11.423482718072748	CAGATTGAAATACAATTA
chr18	78983435	78983436	chr18:78983436:A:G	rs61155970	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr18	79111476	79111477	chr18:79111477:G:A	rs669054	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	11.450829523639808	10.005706860073325	TTAATTATGAAGCCATTA
chr18	79136918	79136919	chr18:79136919:C:A	rs116332227	C	A	C	Msx3.mouse_homeodomain_1	0	1	+	9.72174612920147	8.98058808391134	CCACTTACAAAACCATTA
chr18	79392141	79392142	chr18:79392142:C:G	rs11081535	C	G	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr18	79611302	79611303	chr18:79611303:T:A	rs566564	T	A	A	Msx3.mouse_homeodomain_1	2	1	-	7.387698264121506	4.232270645908885	CTAATTAGCACACAATGA
chr18	79772019	79772020	chr18:79772020:T:C	rs1284567069	T	C	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr19	383910	383911	chr19:383911:G:C	rs12462122	G	C	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr19	392839	392840	chr19:392840:A:G	rs10418459	A	G	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr19	734989	734990	chr19:734990:T:C	rs76864684	T	C	t	Msx3.mouse_homeodomain_1	12	1	+	7.872607524339684	9.317730187906168	AGAATTAAAAATTAATCA
chr19	741708	741709	chr19:741709:C:A	rs74497968	C	A	c	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr19	741757	741758	chr19:741758:G:A	rs17684039	G	A	g	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr19	935457	935458	chr19:935458:C:T	rs112201952	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr19	1172639	1172640	chr19:1172640:G:T	rs76224134	G	T	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr19	1361579	1361580	chr19:1361580:A:G	rs1259794682	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	6.489313103293564	5.597224071222315	TTGATCATGTGGTAATTA
chr19	1436874	1436875	chr19:1436875:A:C	rs3760995	A	C	A	Msx3.mouse_homeodomain_1	12	1	-	6.7522118920531815	4.6979515370035045	CCAATTACACTGTACTCA
chr19	1669247	1669248	chr19:1669248:C:T	rs148798383	C	T	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr19	1686277	1686278	chr19:1686278:C:T	rs6510619	C	T	t	Msx3.mouse_homeodomain_1	0	1	+	7.703562442653711	6.879971698393531	CTAATTAATTAATGATTT
chr19	1687152	1687153	chr19:1687153:C:T	rs8101449	C	T	t	Msx3.mouse_homeodomain_1	12	1	+	6.170916119706866	4.725793456140384	CCAATGAATGTCCAATGA
chr19	1943449	1943450	chr19:1943450:T:A	rs4806821	T	A	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	2094805	2094806	chr19:2094806:G:A	rs373668642	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr19	2154902	2154903	chr19:2154903:G:T	chr19:2154903:G:T	G	T	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr19	2236481	2236482	chr19:2236482:T:C	rs1468358046	T	C	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr19	2362064	2362065	chr19:2362065:A:G	rs55974660	A	G	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr19	2551168	2551169	chr19:2551169:C:T	rs867627545	C	T	c	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	2596541	2596542	chr19:2596542:A:G	rs73526831	A	G	a	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr19	2605361	2605362	chr19:2605362:C:A	rs7250648	C	A	c	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr19	2620538	2620539	chr19:2620539:A:C	rs75537428	A	C	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr19	2631663	2631664	chr19:2631664:G:A	chr19:2631664:G:A	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr19	2864176	2864177	chr19:2864177:C:G	rs4807348	C	G	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr19	2951390	2951391	chr19:2951391:T:A	rs4807376	T	A	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr19	2952081	2952082	chr19:2952082:A:G	rs73529726	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	5.662155017311515	1.6927240409426383	CCAATCTCCAGCCAATCA
chr19	3558050	3558051	chr19:3558051:C:T	rs551306882	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr19	3986408	3986409	chr19:3986409:A:T	rs10421759	A	T	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr19	4053014	4053015	chr19:4053015:G:A	rs7245642	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr19	4390664	4390665	chr19:4390665:C:T	rs113641037	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	10.105881247203346	9.333041070461451	CACATTAAAAAGCCATTA
chr19	4640074	4640075	chr19:4640075:G:C	rs141541950	G	C	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr19	4640098	4640099	chr19:4640099:G:T	rs189975004	G	T	G	Msx3.mouse_homeodomain_1	3	1	-	5.3138933101885835	8.194067674721484	CCACTTGGGAGCTCATTA
chr19	4732154	4732155	chr19:4732155:T:G	rs7255851	T	G	g	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr19	4754238	4754239	chr19:4754239:G:A	rs35746455	G	A	g	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr19	4772750	4772751	chr19:4772751:G:C	rs12462204	G	C	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr19	5112917	5112918	chr19:5112918:G:A	rs553140761	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr19	5269019	5269020	chr19:5269020:G:C	rs933394	G	C	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr19	5386955	5386956	chr19:5386956:G:A	rs67568348	G	A	g	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr19	5386971	5386972	chr19:5386972:G:A	rs66482878	G	A	a	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr19	5431253	5431254	chr19:5431254:G:A	rs586044	G	A	g	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr19	6127780	6127781	chr19:6127781:C:T	rs76291861	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr19	6174124	6174125	chr19:6174125:T:C	rs7257261	T	C	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr19	6361333	6361334	chr19:6361334:A:C	rs62106647	A	C	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr19	6361365	6361366	chr19:6361366:G:C	rs542529937	G	C	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr19	6424945	6424946	chr19:6424946:G:T	rs111668919	G	T	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr19	6461739	6461740	chr19:6461740:T:C	rs168348	T	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr19	6613923	6613924	chr19:6613924:T:C	rs536249892	T	C	t	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr19	6790762	6790763	chr19:6790763:G:A	rs145581663	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr19	6790763	6790764	chr19:6790764:T:C	rs79255239	T	C	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr19	6803258	6803259	chr19:6803259:C:A	rs8109794	C	A	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr19	6811990	6811991	chr19:6811991:T:C	rs11878414	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr19	7179281	7179282	chr19:7179282:A:G	rs145455873	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.894899732884823	3.9254687565159454	CCAATTTAGAGCCAGTTA
chr19	7179308	7179309	chr19:7179309:G:T	rs8112883	G	T	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr19	7268426	7268427	chr19:7268427:G:A	rs7248939	G	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr19	7287999	7288000	chr19:7288000:G:A	rs8111943	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr19	7434555	7434556	chr19:7434556:A:G	rs78290157	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	8.048359967626745	9.493482631193228	CTACTCAGAGTCTAATTA
chr19	7699877	7699878	chr19:7699878:C:G	rs112897528	C	G	N	Msx3.mouse_homeodomain_1	1	1	+	5.7652930103840125	2.5009441533556966	GCCATCAAATCCTAGTTA
chr19	7699885	7699886	chr19:7699886:T:C	rs2287868	T	C	N	Msx3.mouse_homeodomain_1	9	1	+	5.7652930103840125	4.873203978312763	GCCATCAAATCCTAGTTA
chr19	7772856	7772857	chr19:7772857:T:G	rs621025	T	G	g	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr19	7944058	7944059	chr19:7944059:T:C	rs564144503	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.645344363955723	3.057250144932575	TCAATCAGAATCCAATCG
chr19	7944125	7944126	chr19:7944126:T:C	rs552771054	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	6.886411513075731	2.2983172940525805	GCCATTGTCAATCAATCA
chr19	7944130	7944131	chr19:7944131:T:C	rs11669069	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	6.886411513075731	5.945867520689585	GCCATTGTCAATCAATCA
chr19	7959714	7959715	chr19:7959715:G:A	rs17160080	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	7.84596068639187	8.922551857328344	ATCATTACACGCCAATTG
chr19	8034549	8034550	chr19:8034550:T:C	rs12610620	T	C	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr19	8532980	8532981	chr19:8532981:C:T	rs4804310	C	T	c	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr19	8723911	8723912	chr19:8723912:G:A	rs36243	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr19	8941559	8941560	chr19:8941560:A:G	rs7507380	A	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr19	9706219	9706220	chr19:9706220:T:C	rs10413321	T	C	t	Msx3.mouse_homeodomain_1	10	1	+	6.433370098503063	5.389397798629349	TCTATTTAGATGCAATTG
chr19	10008736	10008737	chr19:10008737:G:A	rs78828063	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr19	10288847	10288848	chr19:10288848:T:C	rs36110042	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.298707373837149	2.7106131548139993	AAACTTAACATCCAATCA
chr19	10288874	10288875	chr19:10288875:C:G	rs3093029	C	G	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr19	10523231	10523232	chr19:10523232:T:A	rs10415923	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr19	10692718	10692719	chr19:10692719:A:G	rs2010492	A	G	G	Msx3.mouse_homeodomain_1	8	1	-	7.453363554828708	7.571067203353702	GTAATCACTGTGCAATAA
chr19	10745462	10745463	chr19:10745463:G:T	rs12232826	G	T	g	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr19	10970244	10970245	chr19:10970245:C:T	rs12610374	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr19	11165853	11165854	chr19:11165854:G:A	chr19:11165854:G:A	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr19	11374460	11374461	chr19:11374461:T:C	rs34651602	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr19	11414718	11414719	chr19:11414719:G:T	rs4804592	G	T	G	Msx3.mouse_homeodomain_1	8	1	+	6.564196862607106	6.533475722294763	CTAAGCAGGATGCAATTA
chr19	11598525	11598526	chr19:11598526:A:T	rs8106114	A	T	T	Msx3.mouse_homeodomain_1	12	1	+	8.425990290877976	9.49217638708032	CTAATTGTCTCCAAATTA
chr19	12283738	12283739	chr19:12283739:G:C	rs73004277	G	C	g	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr19	12603915	12603916	chr19:12603916:T:G	chr19:12603916:T:G	T	G	T	Msx3.mouse_homeodomain_1	9	1	-	7.007986508815088	5.701756204870757	CCCATTAACATAAACTTA
chr19	12613955	12613956	chr19:12613956:A:T	rs57345539	A	T	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr19	12623482	12623483	chr19:12623483:A:T	rs8107539	A	T	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr19	12733863	12733864	chr19:12733864:G:A	rs143610591	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr19	12736939	12736940	chr19:12736940:G:A	rs549746751	G	A	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr19	12776217	12776218	chr19:12776218:G:T	rs73503412	G	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr19	13394952	13394953	chr19:13394953:T:C	rs10408936	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr19	13428083	13428084	chr19:13428084:T:C	rs11085849	T	C	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr19	14300621	14300622	chr19:14300622:A:T	rs7251069	A	T	A	Msx3.mouse_homeodomain_1	9	1	-	11.42499625109427	11.839137522967352	TTAATTATATGCAAATTA
chr19	14305980	14305981	chr19:14305981:T:C	rs888876	T	C	C	Msx3.mouse_homeodomain_1	3	1	-	7.533116093414004	3.563685117045127	ACAATTGTGTGCCAATAA
chr19	14432719	14432720	chr19:14432720:T:A	rs117781811	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	7.849332831855084	1.7704194124972275	ACAATTACGATAACATTA
chr19	14449566	14449567	chr19:14449567:T:A	rs3729531	T	A	T	Msx3.mouse_homeodomain_1	12	1	-	7.61677460714782	8.682960703350165	GTCATTAAAAAAAAATAA
chr19	14695204	14695205	chr19:14695205:G:C	rs3813144	G	C	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr19	14844043	14844044	chr19:14844044:A:G	rs10854132	A	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr19	15142904	15142905	chr19:15142905:G:T	rs10401373	G	T	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	15226973	15226974	chr19:15226974:C:T	rs757291	C	T	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr19	15639076	15639077	chr19:15639077:G:A	rs2239368	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	5.713880916152946	4.94104073941105	CCCATTGAATGCCACTTG
chr19	15890929	15890930	chr19:15890930:G:A	rs3093148	G	A	g	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	15926441	15926442	chr19:15926442:T:A	rs7252266	T	A	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr19	16065513	16065514	chr19:16065514:T:A	rs10424815	T	A	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	16069120	16069121	chr19:16069121:G:A	rs35079274	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr19	16234992	16234993	chr19:16234993:C:T	rs189731088	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr19	16273311	16273312	chr19:16273312:G:C	rs748651214	G	C	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr19	16283348	16283349	chr19:16283349:A:T	rs35273955	A	T	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr19	16290011	16290012	chr19:16290012:C:A	rs12185505	C	A	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr19	16316363	16316364	chr19:16316364:A:G	rs17709615	A	G	a	Msx3.mouse_homeodomain_1	10	1	-	7.982459428722394	6.938487128848679	GGAATTACAATCACATTA
chr19	17306755	17306756	chr19:17306756:C:T	rs6903	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	12.56897861362862	11.123855950062136	CTCATTAAAAGACAATTA
chr19	17850267	17850268	chr19:17850268:C:G	rs35563907	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	7.948765700154422	4.684416843126107	GCAATAAACAAGCTATTG
chr19	17933452	17933453	chr19:17933453:T:C	rs1433126	T	C	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr19	18276176	18276177	chr19:18276177:G:A	rs186062044	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr19	18663979	18663980	chr19:18663980:G:T	rs752981	G	T	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr19	19074420	19074421	chr19:19074421:G:A	rs75854698	G	A	G	Msx3.mouse_homeodomain_1	8	1	-	6.067134501881883	5.949430853356889	CCAATTAACATCCTATCT
chr19	19610912	19610913	chr19:19610913:G:A	rs12610185	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr19	19720000	19720001	chr19:19720001:T:C	rs61096607	T	C	t	Msx3.mouse_homeodomain_1	4	1	+	6.753825171158172	0.6552794912890385	GTAATAACAAAGTGATCA
chr19	19793700	19793701	chr19:19793701:G:A	rs7246983	G	A	t	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr19	19977229	19977230	chr19:19977230:C:T	rs11672275	C	T	t	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr19	19977230	19977231	chr19:19977231:C:T	rs11672276	C	T	t	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr19	20279185	20279186	chr19:20279186:A:G	rs73000749	A	G	.	Msx3.mouse_homeodomain_1	14	1	+	6.733723467020828	2.1456292479976775	CTGCTCAAAAGTCAATTA
chr19	20666371	20666372	chr19:20666372:T:C	rs561483	T	C	.	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr19	20777375	20777376	chr19:20777376:G:T	rs12611005	G	T	G	Msx3.mouse_homeodomain_1	0	1	-	13.906942838471036	13.165784793180901	CCAATTAAGCTCTAATTA
chr19	20921639	20921640	chr19:20921640:T:G	rs8104485	T	G	T	Msx3.mouse_homeodomain_1	0	1	+	8.555481907408979	9.746424161543768	TCAATTATGAGCAAATCA
chr19	20921671	20921672	chr19:20921672:A:G	rs73003491	A	G	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	21021626	21021627	chr19:21021627:C:T	rs12976796	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr19	21082952	21082953	chr19:21082953:A:G	rs12973640	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	15.300155650628017	8.392690413704013	CCAATTAACATCTAATTA
chr19	21210291	21210292	chr19:21210292:A:G	rs7247871	A	G	G	Msx3.mouse_homeodomain_1	2	1	-	8.567021621218913	9.339861797960811	ACTATTAGTGGGTAATTA
chr19	21360132	21360133	chr19:21360133:C:G	rs2968022	C	G	.	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr19	21397075	21397076	chr19:21397076:G:T	rs77933789	G	T	.	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr19	21398017	21398018	chr19:21398018:G:T	rs7246684	G	T	.	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr19	21432656	21432657	chr19:21432657:T:A	rs2914648	T	A	N	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr19	21479120	21479121	chr19:21479121:T:C	rs76569820	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr19	21482681	21482682	chr19:21482682:G:A	rs56346453	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr19	21482882	21482883	chr19:21482883:T:A	rs73534731	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	7.05280970960824	3.46052750249572	CTGATCAAAGAACAATCA
chr19	21482890	21482891	chr19:21482891:A:G	rs1232226714	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr19	21631386	21631387	chr19:21631387:A:G	rs12979910	A	G	.	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr19	21704475	21704476	chr19:21704476:G:A	rs74923419	G	A	.	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr19	22009868	22009869	chr19:22009869:C:T	rs10410114	C	T	.	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr19	22053592	22053593	chr19:22053593:C:A	rs6511314	C	A	.	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr19	22067055	22067056	chr19:22067056:G:C	rs7247147	G	C	.	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr19	23247633	23247634	chr19:23247634:T:C	rs7254300	T	C	-	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr19	23577882	23577883	chr19:23577883:C:T	rs73021999	C	T	c	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr19	23853425	23853426	chr19:23853426:C:A	rs2364762	C	A	c	Msx3.mouse_homeodomain_1	0	1	+	6.112262574756101	5.37110452946597	CTATTCAGAAACCAATTG
chr19	24032151	24032152	chr19:24032152:G:A	rs62117620	G	A	A	Msx3.mouse_homeodomain_1	12	1	+	8.60785778687157	9.5959320457189	ACCATTACAACCGAATTA
chr19	27844018	27844019	chr19:27844019:G:T	rs35173855	G	T	g	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr19	28035100	28035101	chr19:28035101:G:A	rs78306786	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr19	28096626	28096627	chr19:28096627:A:G	rs9973221	A	G	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr19	28323258	28323259	chr19:28323259:T:C	rs2607211	T	C	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr19	28396607	28396608	chr19:28396608:T:C	rs956674602	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	12.615938505229064	10.173861278297505	GTAATTATATGCAAATTA
chr19	28406393	28406394	chr19:28406394:A:G	rs1029661	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr19	28406401	28406402	chr19:28406402:C:T	rs7249889	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr19	28509512	28509513	chr19:28509513:A:G	rs4805230	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	6.145422395611525	5.204878403225378	CCTTTTAAAAGGCAATTG
chr19	28574656	28574657	chr19:28574657:T:A	rs75996104	T	A	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	29005545	29005546	chr19:29005546:G:A	rs892177	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr19	29013958	29013959	chr19:29013959:C:T	rs144302006	C	T	C	Msx3.mouse_homeodomain_1	5	1	+	7.904252022528822	10.297237765039323	TTAATCCAATAGTAATTA
chr19	29377280	29377281	chr19:29377281:C:T	rs1981675	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	6.3565079109988165	4.646277492015107	CCAATTGTTTGCTATTTA
chr19	29492020	29492021	chr19:29492021:A:G	rs10421201	A	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr19	29597239	29597240	chr19:29597240:C:T	rs4805440	C	T	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr19	29622864	29622865	chr19:29622865:T:C	chr19:29622865:T:C	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr19	29885810	29885811	chr19:29885811:T:G	rs34707	T	G	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr19	30387501	30387502	chr19:30387502:C:G	rs186794668	C	G	C	Msx3.mouse_homeodomain_1	14	1	+	6.461916569872247	5.434801389103286	GCCATTTATTGCCACTTA
chr19	30446935	30446936	chr19:30446936:A:G	rs33428	A	G	G	Msx3.mouse_homeodomain_1	11	1	-	7.814412139462756	9.524642558446466	TCAATTTACTATCCATTA
chr19	30595279	30595280	chr19:30595280:G:A	rs551018097	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr19	30720650	30720651	chr19:30720651:T:C	rs7351106	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr19	30883446	30883447	chr19:30883447:T:C	rs1466298	T	C	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr19	30883460	30883461	chr19:30883461:G:A	rs1001085	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	10.088505965532967	8.378275546549258	TTAATTACGTGCAAATTA
chr19	31209334	31209335	chr19:31209335:C:T	rs4805652	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	5.609370766953243	4.412419741777834	GCAAGTGTCCAGTAATTA
chr19	31331466	31331467	chr19:31331467:C:T	rs996788448	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr19	31590413	31590414	chr19:31590414:G:A	rs185478677	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr19	31600775	31600776	chr19:31600776:A:C	rs2903648	A	C	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr19	32230013	32230014	chr19:32230014:C:T	rs75222178	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr19	32308031	32308032	chr19:32308032:T:C	rs8103676	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr19	32320912	32320913	chr19:32320913:T:C	rs2867792	T	C	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr19	32337548	32337549	chr19:32337549:C:G	rs8110851	C	G	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr19	32426548	32426549	chr19:32426549:T:A	rs2111504	T	A	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr19	32561029	32561030	chr19:32561030:G:T	rs10411677	G	T	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr19	32602748	32602749	chr19:32602749:T:G	rs10410895	T	G	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr19	32613398	32613399	chr19:32613399:A:G	rs369859	A	G	G	Msx3.mouse_homeodomain_1	9	1	-	5.300319522042736	4.408230489971487	GTCATTGCATGGCAATTC
chr19	32694838	32694839	chr19:32694839:A:G	rs6510278	A	G	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	32702255	32702256	chr19:32702256:G:C	rs113282417	G	C	G	Msx3.mouse_homeodomain_1	3	1	+	6.088683062663361	7.177939674499338	CCAGATAGAAAGCAATTA
chr19	32877159	32877160	chr19:32877160:C:T	rs34035782	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr19	32915184	32915185	chr19:32915185:G:A	rs3764632	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr19	33119153	33119154	chr19:33119154:A:G	rs8113398	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	6.049430809521462	7.494553473087945	GCAATCACACACTGATAA
chr19	33217162	33217163	chr19:33217163:C:A	rs11666788	C	A	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr19	33374416	33374417	chr19:33374417:G:T	rs79824755	G	T	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr19	33389093	33389094	chr19:33389094:C:G	rs3786893	C	G	C	Msx3.mouse_homeodomain_1	5	1	+	7.031778691347307	4.982182656390645	AACATCAGACTCCAATTA
chr19	33473879	33473880	chr19:33473880:C:A	rs80183241	C	A	A	Msx3.mouse_homeodomain_1	12	1	+	6.462564418662807	3.9512556588939822	GGAATTTACAGGCAATCA
chr19	33550611	33550612	chr19:33550612:T:A	rs12976330	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	6.804137798993483	2.477377447643928	GGAATTATTTTCCCATTG
chr19	33723824	33723825	chr19:33723825:G:T	rs17227533	G	T	T	Msx3.mouse_homeodomain_1	0	1	+	4.731694608143878	3.540752354009089	GCCATTGTCACCCCATTG
chr19	33724496	33724497	chr19:33724497:C:T	rs112034874	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr19	33751298	33751299	chr19:33751299:A:G	rs80225728	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	33830933	33830934	chr19:33830934:A:G	rs442642	A	G	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr19	33982823	33982824	chr19:33982824:A:G	chr19:33982824:A:G	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	7.200091950890665	4.807106208380166	CTTATTATATAGACATTA
chr19	34179819	34179820	chr19:34179820:T:C	rs640466	T	C	C	Msx3.mouse_homeodomain_1	0	1	-	8.56229997199118	9.670809527155924	ATAATTAAATTCAAGTTA
chr19	34253735	34253736	chr19:34253736:G:C	rs113461151	G	C	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr19	34359955	34359956	chr19:34359956:T:C	rs113146457	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr19	34410930	34410931	chr19:34410931:C:T	rs142288515	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr19	34419927	34419928	chr19:34419928:G:A	rs117860607	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr19	34475784	34475785	chr19:34475785:A:C	rs10405504	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	9.764860771543614	6.880667715066239	ACAATAAATAAAAAATTA
chr19	34667942	34667943	chr19:34667943:C:T	rs10411637	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr19	34676784	34676785	chr19:34676785:T:G	rs10413838	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	7.322839130436193	4.438646073958817	ACACTTAAATGTTAATTG
chr19	34737178	34737179	chr19:34737179:A:C	rs8106730	A	C	C	Msx3.mouse_homeodomain_1	3	1	+	7.648414474913014	4.768240110380113	GTGATTATTAAGTAATAA
chr19	34980135	34980136	chr19:34980136:A:T	rs146526844	A	T	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr19	35144326	35144327	chr19:35144327:C:T	rs1673006	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr19	35203373	35203374	chr19:35203374:A:C	rs77906813	A	C	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr19	35236750	35236751	chr19:35236751:T:C	rs118056438	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	4.676653467495356	-2.2308117694286493	GCAAAGAGACAGCAATTA
chr19	35334293	35334294	chr19:35334294:G:A	chr19:35334294:G:A	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr19	35334301	35334302	chr19:35334302:A:T	rs2267575	A	T	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	35376376	35376377	chr19:35376377:C:T	rs10414199	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr19	35713787	35713788	chr19:35713788:A:G	rs107068	A	G	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr19	35993514	35993515	chr19:35993515:C:T	rs74898370	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr19	36072033	36072034	chr19:36072034:C:T	rs74714004	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr19	36215603	36215604	chr19:36215604:A:G	rs115455300	A	G	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr19	36424128	36424129	chr19:36424129:A:G	rs2945983	A	G	G	Msx3.mouse_homeodomain_1	17	1	+	6.191035307657596	3.6228757104743936	CCAATCAGAGACTAAATA
chr19	36963094	36963095	chr19:36963095:A:G	rs569371	A	G	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr19	37899012	37899013	chr19:37899013:T:A	rs35209753	T	A	T	Msx3.mouse_homeodomain_1	16	1	+	6.109330186641897	2.224492259118838	CCCATCAATGAATAATTG
chr19	37934518	37934519	chr19:37934519:T:C	rs112046274	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	9.670740694178981	6.545791540585129	ATAATTAATAGATGATTA
chr19	37954345	37954346	chr19:37954346:G:A	rs7258011	G	A	g	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr19	37974882	37974883	chr19:37974883:G:T	rs1807157	G	T	G	Msx3.mouse_homeodomain_1	11	1	-	6.913465781529143	5.631049215643471	CAAATTAACTACCCTTTA
chr19	38096080	38096081	chr19:38096081:A:G	rs1654365	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr19	38402600	38402601	chr19:38402601:G:A	rs12462266	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr19	38402601	38402602	chr19:38402602:C:T	rs12462230	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr19	38586612	38586613	chr19:38586613:G:T	rs73032657	G	T	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr19	38661488	38661489	chr19:38661489:C:T	rs114765266	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	38784704	38784705	chr19:38784705:A:C	rs8100321	A	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr19	38827365	38827366	chr19:38827366:C:T	rs7248208	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr19	38830319	38830320	chr19:38830320:C:T	rs10401746	C	T	c	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr19	38848802	38848803	chr19:38848803:G:A	rs73041806	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr19	39033167	39033168	chr19:39033168:C:G	rs184576548	C	G	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr19	39033197	39033198	chr19:39033198:T:G	chr19:39033198:T:G	T	G	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr19	39194223	39194224	chr19:39194224:C:T	rs892016	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr19	39194268	39194269	chr19:39194269:A:C	rs892015	A	C	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr19	39252524	39252525	chr19:39252525:T:G	rs8099917	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	5.850720171497298	2.9665271150199217	CCAATTTGGGTGAAATTG
chr19	39329794	39329795	chr19:39329795:T:C	rs139890961	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr19	39755049	39755050	chr19:39755050:T:C	rs7248018	T	C	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr19	39810712	39810713	chr19:39810713:A:G	rs79795592	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr19	39921995	39921996	chr19:39921996:C:A	rs7252127	C	A	.	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr19	40193522	40193523	chr19:40193523:A:G	rs57263119	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	7.54971772110025	5.032849093163172	TTAATTGAGCACCTATTA
chr19	40219974	40219975	chr19:40219975:G:T	rs114691974	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	9.112077922940376	7.487313044666927	TACATTAATGGGCAATTA
chr19	40220000	40220001	chr19:40220001:G:A	rs141294839	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr19	40281891	40281892	chr19:40281892:A:G	rs553993438	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr19	40312782	40312783	chr19:40312783:G:A	rs66623822	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr19	40599000	40599001	chr19:40599001:T:C	rs372100363	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr19	40659607	40659608	chr19:40659608:A:C	rs2604905	A	C	A	Msx3.mouse_homeodomain_1	3	1	+	8.733367692627947	5.853193328095047	GCAATCATTCTCTGATTA
chr19	41155271	41155272	chr19:41155272:G:T	rs10421210	G	T	.	Msx3.mouse_homeodomain_1	6	1	-	6.661526207024811	10.906542013496974	CCAATTCATAAGCACTTG
chr19	41547567	41547568	chr19:41547568:T:G	rs887499	T	G	-	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr19	41649446	41649447	chr19:41649447:C:G	rs4803494	C	G	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr19	41761980	41761981	chr19:41761981:T:G	rs11548735	T	G	t	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr19	42280062	42280063	chr19:42280063:C:A	rs1221692876	C	A	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr19	42283111	42283112	chr19:42283112:G:A	rs892698265	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr19	42347058	42347059	chr19:42347059:C:A	rs117675810	C	A	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr19	42449138	42449139	chr19:42449139:A:G	rs74202111	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr19	42450816	42450817	chr19:42450817:T:G	rs76979333	T	G	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr19	42655351	42655352	chr19:42655352:G:A	rs147280076	G	A	.	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr19	42684150	42684151	chr19:42684151:T:C	rs1249179365	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr19	42698526	42698527	chr19:42698527:C:A	rs10412017	C	A	c	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr19	42736226	42736227	chr19:42736227:C:G	rs8103264	C	G	c	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr19	42761432	42761433	chr19:42761433:A:G	rs62112124	A	G	a	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr19	42761441	42761442	chr19:42761442:G:A	rs117393490	G	A	g	Msx3.mouse_homeodomain_1	11	1	-	6.521466896420751	4.81123647743704	GCAATTAGTTACAACTTT
chr19	42834920	42834921	chr19:42834921:G:C	rs2107458	G	C	N	Msx3.mouse_homeodomain_1	7	1	+	5.76096776503165	5.480896755650487	CCAATCAGGTTGCATTTG
chr19	42851460	42851461	chr19:42851461:A:G	rs369489177	A	G	a	Msx3.mouse_homeodomain_1	17	1	-	10.082445934674938	8.866375549427227	GCAATTAGTTACAAATTT
chr19	42851684	42851685	chr19:42851685:T:C	chr19:42851685:T:C	T	C	t	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr19	42875602	42875603	chr19:42875603:C:T	rs139530803	C	T	c	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr19	42875642	42875643	chr19:42875643:A:T	rs142519461	A	T	a	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr19	42933367	42933368	chr19:42933368:T:G	rs112532940	T	G	.	Msx3.mouse_homeodomain_1	16	1	+	6.947516802130834	1.8739840260215046	GAACTTGTCTGGCAATTA
chr19	42933372	42933373	chr19:42933373:G:C	rs113946342	G	C	.	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr19	43041548	43041549	chr19:43041549:G:C	rs1212872327	G	C	.	Msx3.mouse_homeodomain_1	7	1	+	9.660700302370795	9.380629292989632	ACAATTAGAGTTTGATTA
chr19	43078631	43078632	chr19:43078632:T:G	rs189373838	T	G	.	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr19	43098522	43098523	chr19:43098523:C:A	rs8100616	C	A	.	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	43104140	43104141	chr19:43104141:A:G	rs61527144	A	G	.	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr19	43201610	43201611	chr19:43201611:C:T	rs28731285	C	T	.	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr19	43201611	43201612	chr19:43201612:G:A	chr19:43201612:G:A	G	A	.	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	43201611	43201612	chr19:43201612:G:T	rs28630546	G	T	.	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	43265509	43265510	chr19:43265510:G:A	rs750175148	G	A	.	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	43265527	43265528	chr19:43265528:C:T	rs144906526	C	T	.	Msx3.mouse_homeodomain_1	7	1	+	5.8424336437439335	6.172374596460032	TCCATCACCAAACAATCA
chr19	43409913	43409914	chr19:43409914:T:G	rs8182585	T	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr19	44095234	44095235	chr19:44095235:G:C	chr19:44095235:G:C	G	C	.	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr19	44401943	44401944	chr19:44401944:C:T	rs2571148	C	T	T	Msx3.mouse_homeodomain_1	10	1	+	9.606505812822707	10.650478112696423	TCAATTAACACTCACTTA
chr19	44575110	44575111	chr19:44575111:T:C	rs860180	T	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr19	44575132	44575133	chr19:44575133:C:T	rs12978619	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.199914403289405	9.27650557422588	ACAATTACTCGACAATCA
chr19	44588026	44588027	chr19:44588027:T:C	rs114023670	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	7.045461952707961	4.477302355524759	CTCCTTATGTGCTAATTA
chr19	44588051	44588052	chr19:44588052:C:T	rs79309689	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr19	45010356	45010357	chr19:45010357:T:C	rs68077521	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	45023392	45023393	chr19:45023393:T:C	rs117603316	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr19	45577421	45577422	chr19:45577422:A:G	rs75338467	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr19	45577423	45577424	chr19:45577424:C:T	rs892100	C	T	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr19	45764797	45764798	chr19:45764798:C:T	rs1046835709	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr19	45790877	45790878	chr19:45790878:G:A	rs72626215	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr19	45792705	45792706	chr19:45792706:C:A	rs898891884	C	A	c	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr19	45866255	45866256	chr19:45866256:A:T	rs76069409	A	T	a	Msx3.mouse_homeodomain_1	15	1	-	10.146062270388198	4.067148851030341	CTAATTAAAAAAAAATTT
chr19	45877844	45877845	chr19:45877845:G:A	rs112120887	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr19	46000703	46000704	chr19:46000704:G:A	rs117685325	G	A	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	46013589	46013590	chr19:46013590:C:T	rs7508613	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr19	46070525	46070526	chr19:46070526:G:A	rs10500294	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr19	46133635	46133636	chr19:46133636:A:G	rs141719194	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr19	46173891	46173892	chr19:46173892:G:A	rs10412768	G	A	A	Msx3.mouse_homeodomain_1	0	1	+	9.629550635165117	8.521041080000373	GTACTTGGTATGCAATTA
chr19	46395684	46395685	chr19:46395685:T:C	rs11083823	T	C	C	Msx3.mouse_homeodomain_1	3	1	-	6.823331551001817	2.85390057463294	ACAATCACAGAACAGTTA
chr19	46409563	46409564	chr19:46409564:C:T	rs78764302	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr19	46478456	46478457	chr19:46478457:A:G	rs2311596	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr19	46547361	46547362	chr19:46547362:A:G	rs2017853	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.3391586877307455	1.2406130078616138	CCCCTTACAAAACCATTA
chr19	46577087	46577088	chr19:46577088:A:G	rs62136916	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr19	46618440	46618441	chr19:46618441:T:C	rs9710411	T	C	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr19	46618487	46618488	chr19:46618488:A:G	rs9304662	A	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr19	46618609	46618610	chr19:46618610:T:C	rs4803985	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr19	46648159	46648160	chr19:46648160:G:A	rs112364896	G	A	g	Msx3.mouse_homeodomain_1	0	1	+	6.543536146799169	5.435026591634425	GAAATTCAAACCGAATTA
chr19	46735691	46735692	chr19:46735692:C:T	rs62134791	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	46829946	46829947	chr19:46829947:G:A	rs312181	G	A	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr19	46935314	46935315	chr19:46935315:T:G	rs311378	T	G	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr19	46984566	46984567	chr19:46984567:G:A	rs751322109	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr19	47074216	47074217	chr19:47074217:G:A	rs62136857	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr19	47111803	47111804	chr19:47111804:G:A	rs1382932708	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr19	47420207	47420208	chr19:47420208:T:C	rs76302421	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr19	47664308	47664309	chr19:47664309:C:T	rs190603720	C	T	C	Msx3.mouse_homeodomain_1	17	1	-	5.504073661886619	8.072233259069822	CCACTTGTAATGCAATCG
chr19	47664309	47664310	chr19:47664310:G:A	rs79485216	G	A	G	Msx3.mouse_homeodomain_1	16	1	-	5.504073661886619	8.629022815480472	CCACTTGTAATGCAATCG
chr19	47664314	47664315	chr19:47664315:C:T	rs147366179	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	5.504073661886619	4.3071226367112105	CCACTTGTAATGCAATCG
chr19	47819342	47819343	chr19:47819343:A:G	rs34591395	A	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr19	48332990	48332991	chr19:48332991:G:A	rs376775352	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr19	48333015	48333016	chr19:48333016:T:C	rs368889848	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	5.254268363974873	2.8121911370433152	TCGATGAACAGCCAATCA
chr19	48549523	48549524	chr19:48549524:A:C	rs1313903073	A	C	a	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	48618530	48618531	chr19:48618531:T:C	rs12610339	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr19	48812727	48812728	chr19:48812728:C:T	rs58129411	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr19	48812734	48812735	chr19:48812735:C:T	rs3760788	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr19	49215812	49215813	chr19:49215813:A:G	rs113136004	A	G	-	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr19	49329970	49329971	chr19:49329971:T:C	rs354030	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.15615875444551	3.1867277780766314	GCTATTAAAAAACACTTT
chr19	49375508	49375509	chr19:49375509:G:A	rs2115385	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr19	49488542	49488543	chr19:49488543:G:A	rs2681570	G	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr19	49492264	49492265	chr19:49492265:C:T	rs3203517	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr19	49492278	49492279	chr19:49492279:G:A	rs11669553	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	7.385425246026272	6.276915690861526	GTAATCAGAAATAAATTG
chr19	49496622	49496623	chr19:49496623:C:T	rs4802613	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr19	49496668	49496669	chr19:49496669:G:A	rs76089857	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr19	49858649	49858650	chr19:49858650:C:T	rs34436456	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	4.95100248183797	3.75405145666256	CCACTCACGAAGCCATTG
chr19	49983483	49983484	chr19:49983484:G:A	rs17605685	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr19	50144073	50144074	chr19:50144074:C:T	rs143697354	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr19	50198830	50198831	chr19:50198831:T:C	rs28539883	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr19	50289925	50289926	chr19:50289926:C:G	rs588035	C	G	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr19	50300993	50300994	chr19:50300994:G:A	rs117143947	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	6.711949258702528	5.514998233527117	CTAATTACCCAGTCATTG
chr19	50425884	50425885	chr19:50425885:G:A	rs56235776	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr19	50588568	50588569	chr19:50588569:G:A	rs139783865	G	A	g	Msx3.mouse_homeodomain_1	12	1	+	8.834445046926247	9.82251930577358	TCAATTAAATACGAATTC
chr19	50705415	50705416	chr19:50705416:T:C	rs145963005	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr19	51654432	51654433	chr19:51654433:C:T	rs11666027	C	T	T	Msx3.mouse_homeodomain_1	16	1	+	5.8493412087447725	8.974290362338625	CCAATTTAGGGCCAATCG
chr19	51661129	51661130	chr19:51661130:T:G	rs2167422	T	G	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr19	51661157	51661158	chr19:51661158:C:T	rs2167423	C	T	T	Msx3.mouse_homeodomain_1	8	1	+	6.59857317564249	6.480869527117494	CCAATCCACGTCCAATTG
chr19	51661158	51661159	chr19:51661159:G:A	rs73052856	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	6.59857317564249	7.539117168028636	CCAATCCACGTCCAATTG
chr19	51661181	51661182	chr19:51661182:C:G	rs73052857	C	G	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr19	51811142	51811143	chr19:51811143:T:C	rs11878589	T	C	t	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr19	51824530	51824531	chr19:51824531:C:T	rs3752125	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	6.276854605756589	7.353445776693065	CCATTAGAATGCCAATTA
chr19	52331767	52331768	chr19:52331768:G:A	rs62111465	G	A	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr19	52492494	52492495	chr19:52492495:C:A	rs141947202	C	A	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr19	52510896	52510897	chr19:52510897:C:T	rs61743936	C	T	N	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr19	52541451	52541452	chr19:52541452:T:C	rs2608514	T	C	N	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr19	52597883	52597884	chr19:52597884:A:C	rs35265503	A	C	a	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr19	52658801	52658802	chr19:52658802:C:G	rs10426781	C	G	N	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr19	52658848	52658849	chr19:52658849:T:C	rs7246133	T	C	N	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr19	52659329	52659330	chr19:52659330:C:A	rs118160601	C	A	c	Msx3.mouse_homeodomain_1	5	1	-	7.3721397511269435	11.81472152859411	CCAATGACTTACTGATTA
chr19	52659354	52659355	chr19:52659355:C:A	rs11880907	C	A	c	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr19	52664567	52664568	chr19:52664568:C:T	rs67885014	C	T	c	Msx3.mouse_homeodomain_1	10	1	+	6.172766479708711	7.216738779582428	CCAATTAACACGAACTTT
chr19	52669289	52669290	chr19:52669290:G:A	rs4801927	G	A	g	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr19	52669291	52669292	chr19:52669292:C:T	rs4801928	C	T	c	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr19	52728874	52728875	chr19:52728875:G:A	rs10853854	G	A	g	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr19	52796215	52796216	chr19:52796216:G:C	rs79767538	G	C	g	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr19	52796221	52796222	chr19:52796222:A:G	rs73067535	A	G	a	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr19	52900751	52900752	chr19:52900752:T:G	rs8110309	T	G	-	Msx3.mouse_homeodomain_1	0	1	-	6.777401247344872	7.518559292635003	ATAATCACAAACCCATCA
chr19	53041476	53041477	chr19:53041477:C:T	rs115153916	C	T	c	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr19	53041525	53041526	chr19:53041526:G:T	rs552305635	G	T	g	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr19	53054878	53054879	chr19:53054879:T:C	rs329712	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr19	53470262	53470263	chr19:53470263:A:G	rs73047411	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr19	53520424	53520425	chr19:53520425:T:G	rs1284518	T	G	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr19	53840669	53840670	chr19:53840670:A:C	rs4322767	A	C	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr19	54015170	54015171	chr19:54015171:C:T	rs57182081	C	T	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr19	54224866	54224867	chr19:54224867:G:A	rs56307620	G	A	g	Msx3.mouse_homeodomain_1	0	1	+	9.187545976000843	8.079036420836099	GCCATTAAAAAGGAATTT
chr19	54224894	54224895	chr19:54224895:A:G	rs3859534	A	G	N	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr19	54572721	54572722	chr19:54572722:A:G	chr19:54572722:A:G	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	9.211020130412713	8.134428959476239	GGAATTAAATACAAATCA
chr19	54653562	54653563	chr19:54653563:G:A	rs112506936	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr19	54726403	54726404	chr19:54726404:C:T	rs270789	C	T	c	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr19	55132754	55132755	chr19:55132755:G:C	rs10414711	G	C	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr19	55153754	55153755	chr19:55153755:A:T	rs7252048	A	T	A	Msx3.mouse_homeodomain_1	6	1	+	8.660967274203026	5.068685067090508	GAAATTAAAAAAAAATTT
chr19	55385632	55385633	chr19:55385633:G:A	rs11882786	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr19	55672410	55672411	chr19:55672411:A:G	rs681433	A	G	G	Msx3.mouse_homeodomain_1	3	1	+	8.420266718477542	4.450835742108663	TCTATTATTTCTCAATTA
chr19	55989818	55989819	chr19:55989819:C:T	rs7250628	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr19	56073715	56073716	chr19:56073716:C:T	rs55764155	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr19	56266175	56266176	chr19:56266176:C:T	rs34176845	C	T	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr19	56706108	56706109	chr19:56706109:G:T	rs57909104	G	T	t	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr19	57278878	57278879	chr19:57278879:G:A	rs143062227	G	A	g	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr19	57435332	57435333	chr19:57435333:C:A	rs1287600330	C	A	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr19	57552958	57552959	chr19:57552959:T:G	rs73060407	T	G	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr19	57632231	57632232	chr19:57632232:A:G	rs57900059	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.045493144977672	1.457398925954522	GCATTTGAAGAGCAATAA
chr19	57803308	57803309	chr19:57803309:T:C	rs8100221	T	C	.	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr19	57887402	57887403	chr19:57887403:C:T	rs147800328	C	T	.	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr19	57960881	57960882	chr19:57960882:T:C	rs2011501	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr19	58022241	58022242	chr19:58022242:A:G	rs77222313	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr19	58275153	58275154	chr19:58275154:A:C	rs378452	A	C	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	465299	465300	chr2:465300:T:G	rs868559	T	G	g	Msx3.mouse_homeodomain_1	8	1	-	9.860490617431903	8.94092379279935	GGAATAATAGTGCAATTA
chr2	585060	585061	chr2:585061:C:A	rs77623481	C	A	c	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	741945	741946	chr2:741946:C:G	rs58722485	C	G	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	768525	768526	chr2:768526:C:T	rs73143779	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	1075920	1075921	chr2:1075921:T:C	rs4443028	T	C	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	1271862	1271863	chr2:1271863:A:G	rs36188033	A	G	G	Msx3.mouse_homeodomain_1	16	1	-	7.341125933997	4.216176780403147	TTGATGAGAAGCCAATTA
chr2	1442299	1442300	chr2:1442300:G:A	rs9326172	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr2	1567610	1567611	chr2:1567611:G:A	rs72776302	G	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr2	1572727	1572728	chr2:1572728:T:C	chr2:1572728:T:C	T	C	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	1583765	1583766	chr2:1583766:C:T	rs72778019	C	T	C	Msx3.mouse_homeodomain_1	9	1	-	8.246690380015025	9.187234372401171	GAGATTATTGTGTAATTA
chr2	1707542	1707543	chr2:1707543:T:G	rs62116633	T	G	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	2101984	2101985	chr2:2101985:C:T	rs61495939	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	2888371	2888372	chr2:2888372:G:A	rs11692061	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	6.223916694417883	5.11540713925314	GCCCCTAAAGACCAATTA
chr2	2910519	2910520	chr2:2910520:G:A	rs1470614	G	A	A	Msx3.mouse_homeodomain_1	3	1	-	8.228351348214286	5.981175372599092	CCACTTATTCAGCACTTA
chr2	2931501	2931502	chr2:2931502:C:T	rs115717820	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	3078635	3078636	chr2:3078636:T:C	rs7419757	T	C	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr2	3193917	3193918	chr2:3193918:G:C	rs142651251	G	C	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	3256953	3256954	chr2:3256954:A:G	rs2602746	A	G	G	Msx3.mouse_homeodomain_1	9	1	-	9.178013980244067	8.28592494817282	ACACTCACATGGCAATTA
chr2	3256969	3256970	chr2:3256970:G:A	rs2694070	G	A	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr2	3290801	3290802	chr2:3290802:C:T	rs62121505	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	3492778	3492779	chr2:3492779:C:G	rs112016091	C	G	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	3492790	3492791	chr2:3492791:A:G	rs74531064	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	7.131088931425428	4.006139777831576	GCAGTGAAAACCTAATTA
chr2	3763415	3763416	chr2:3763416:T:G	rs553358038	T	G	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	3822879	3822880	chr2:3822880:T:C	rs11675756	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	3873094	3873095	chr2:3873095:C:A	rs17509530	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	4188675	4188676	chr2:4188676:T:G	rs12611911	T	G	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	4550306	4550307	chr2:4550307:G:A	rs1158617	G	A	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	4784483	4784484	chr2:4784484:G:A	rs11685433	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	5790908	5790909	chr2:5790909:G:A	rs1429220	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr2	5819290	5819291	chr2:5819291:A:G	rs139332686	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	5994807	5994808	chr2:5994808:T:C	rs1405262	T	C	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr2	6524048	6524049	chr2:6524049:G:A	rs59936451	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	6748783	6748784	chr2:6748784:C:G	rs6431824	C	G	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr2	6932803	6932804	chr2:6932804:A:G	rs10167072	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.781945442343563	4.1938512233204115	TCAATTGATAACCAATGA
chr2	6961121	6961122	chr2:6961122:A:G	rs771317	A	G	G	Msx3.mouse_homeodomain_1	0	1	+	11.151190819745423	12.259700374910171	ATAATAATTTAGCAATTA
chr2	7469895	7469896	chr2:7469896:C:T	rs1439973	C	T	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr2	7822648	7822649	chr2:7822649:C:T	rs1916664	C	T	T	Msx3.mouse_homeodomain_1	9	1	-	7.818447928222336	8.75899192060848	ATGATTAAGGGGCAATCA
chr2	7865696	7865697	chr2:7865697:A:G	rs1019321	A	G	a	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	7899870	7899871	chr2:7899871:A:G	rs35524269	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr2	8033823	8033824	chr2:8033824:G:A	rs78851551	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	6.996276086090885	7.326217038806985	CCCATTACATAACAATCG
chr2	8150588	8150589	chr2:8150589:C:T	rs11695288	C	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr2	8154552	8154553	chr2:8154553:C:A	chr2:8154553:C:A	C	A	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	8154552	8154553	chr2:8154553:C:T	rs114207055	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	8154580	8154581	chr2:8154581:G:A	rs74360315	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	8347165	8347166	chr2:8347166:C:T	rs9287698	C	T	C	Msx3.mouse_homeodomain_1	12	1	-	8.896224195052763	9.884298453900097	CCAATTAGGAAGGACTTA
chr2	8575788	8575789	chr2:8575789:C:T	rs1032014118	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	7.593841919272934	6.770251175012754	CTAATTAGTTGCCAAATA
chr2	8578159	8578160	chr2:8578160:T:C	rs6737516	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr2	8591306	8591307	chr2:8591307:T:C	rs12692360	T	C	t	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	8657376	8657377	chr2:8657377:A:G	rs3856459	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	8.755205314764861	1.8477400778408568	TCACTTAAGACTTAATTA
chr2	8746411	8746412	chr2:8746412:A:G	rs12151751	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	8.572840079535895	7.566290746690688	CCACTTACATAGTAATTT
chr2	9228090	9228091	chr2:9228091:G:A	rs6747915	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	9247927	9247928	chr2:9247928:A:G	rs62121269	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	9247942	9247943	chr2:9247943:A:G	rs573137438	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr2	9277376	9277377	chr2:9277377:G:T	rs146500277	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	9.249216578285228	6.548927201344763	ACAATCATAATTAAATTA
chr2	9313116	9313117	chr2:9313117:C:T	rs11892025	C	T	c	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	9473159	9473160	chr2:9473160:T:C	rs2001658	T	C	C	Msx3.mouse_homeodomain_1	13	1	-	10.55046380424202	8.493189625335821	CAAATTAATTAGCAATTT
chr2	9692596	9692597	chr2:9692597:T:G	rs538542746	T	G	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	9765829	9765830	chr2:9765830:T:A	rs884881	T	A	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	9898746	9898747	chr2:9898747:A:C	rs453568	A	C	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	9974643	9974644	chr2:9974644:G:C	rs11893694	G	C	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	10124898	10124899	chr2:10124899:G:A	rs72544297	G	A	G	Msx3.mouse_homeodomain_1	9	1	-	11.23060591165217	12.122694943723417	GTAATAAATCAACAATTA
chr2	10124899	10124900	chr2:10124900:A:G	rs202195880	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	11.23060591165217	11.348309560177164	GTAATAAATCAACAATTA
chr2	10150524	10150525	chr2:10150525:C:A	rs62129919	C	A	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	10168357	10168358	chr2:10168358:T:G	rs4669546	T	G	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	10235295	10235296	chr2:10235296:C:T	rs12465543	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	10235301	10235302	chr2:10235302:T:G	rs12470593	T	G	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr2	10875680	10875681	chr2:10875681:G:C	rs11692121	G	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	10910111	10910112	chr2:10910112:C:T	rs78688982	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.479975196910567	6.0348525333440834	GTATTTAGAAGCCCATTA
chr2	10981149	10981150	chr2:10981150:T:C	rs896752	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	11017988	11017989	chr2:11017989:A:G	rs6720344	A	G	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	11130755	11130756	chr2:11130756:G:A	rs2357991	G	A	g	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	11213073	11213074	chr2:11213074:T:C	rs7598032	T	C	C	Msx3.mouse_homeodomain_1	7	1	-	8.319104902593473	7.209289365269879	GCACTTAATAGTTGATTA
chr2	11489169	11489170	chr2:11489170:C:T	rs11903099	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	11630558	11630559	chr2:11630559:A:G	rs7564647	A	G	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr2	11846664	11846665	chr2:11846665:A:G	rs2118403	A	G	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	11903372	11903373	chr2:11903373:T:C	rs115751621	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr2	11903402	11903403	chr2:11903403:A:G	rs116803222	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	12032323	12032324	chr2:12032324:A:G	rs1550396	A	G	.	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	12439052	12439053	chr2:12439053:G:A	rs10211429	G	A	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	12487602	12487603	chr2:12487603:A:G	rs11680430	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	12590625	12590626	chr2:12590626:A:G	rs939217	A	G	G	Msx3.mouse_homeodomain_1	13	1	+	7.538444680865399	5.4811705019592045	ACAATAACCACGCAATCA
chr2	12606563	12606564	chr2:12606564:A:G	rs871535	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr2	12676751	12676752	chr2:12676752:T:C	rs62124716	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	12847504	12847505	chr2:12847505:G:T	rs4669890	G	T	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	14165861	14165862	chr2:14165862:T:C	rs2380559	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr2	14550088	14550089	chr2:14550089:T:C	rs2675893	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	14958166	14958167	chr2:14958167:T:G	rs16862183	T	G	T	Msx3.mouse_homeodomain_1	5	1	+	8.679059917891639	4.2364781404244765	CCCATTTAATTGAAATTA
chr2	15092481	15092482	chr2:15092482:C:A	rs556416204	C	A	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	15092686	15092687	chr2:15092687:G:A	rs1178194	G	A	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr2	15092700	15092701	chr2:15092701:C:T	rs10171235	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	8.249159638922684	8.13145599039769	CCAATTCACGGATAATTA
chr2	15359002	15359003	chr2:15359003:C:T	rs11692624	C	T	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	15378464	15378465	chr2:15378465:C:T	rs2049718	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	15511721	15511722	chr2:15511722:G:A	rs2287272	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.05661893546704	6.948109380302294	GCAATGAGGGAGCCATTA
chr2	15560636	15560637	chr2:15560637:C:T	rs75644567	C	T	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	15701095	15701096	chr2:15701096:C:A	rs75982456	C	A	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr2	15701105	15701106	chr2:15701106:T:A	rs1421610	T	A	A	Msx3.mouse_homeodomain_1	16	1	-	11.80552575309813	15.69036368062119	CCCATTAAAAAGCAATAA
chr2	16119568	16119569	chr2:16119569:T:G	rs138786923	T	G	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr2	17137097	17137098	chr2:17137098:A:T	rs1911685	A	T	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	17247818	17247819	chr2:17247819:C:G	rs17477625	C	G	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	17329490	17329491	chr2:17329491:T:G	rs4494744	T	G	T	Msx3.mouse_homeodomain_1	10	1	-	8.2409709216498	6.703427097800964	GCACTTAGTTAACACTTA
chr2	17459589	17459590	chr2:17459590:A:G	rs35124324	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	18092326	18092327	chr2:18092327:T:C	rs2345098	T	C	C	Msx3.mouse_homeodomain_1	10	1	+	8.236290205345604	7.192317905471888	ACCCTTATCATCTAATTA
chr2	18370242	18370243	chr2:18370243:G:A	rs11096532	G	A	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	18403046	18403047	chr2:18403047:C:T	rs78740475	C	T	C	Msx3.mouse_homeodomain_1	6	1	+	7.620076818663952	8.272810418023592	CCAATTCATCTGCAATTT
chr2	18422498	18422499	chr2:18422499:C:T	rs76939528	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.77822784026626	7.333105176699776	TTAATCAATTTCCAATTT
chr2	18422506	18422507	chr2:18422507:A:G	rs16984968	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr2	18455682	18455683	chr2:18455683:T:C	rs76581922	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	18740078	18740079	chr2:18740079:A:G	rs10495692	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	18977555	18977556	chr2:18977556:C:G	rs16985756	C	G	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	19505736	19505737	chr2:19505737:A:G	rs60115360	A	G	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	19623499	19623500	chr2:19623500:C:A	rs6531180	C	A	c	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	19820401	19820402	chr2:19820402:G:T	rs1469961	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	5.78862787444051	3.2773191146716854	GCGATGGGCCACCAATTA
chr2	19820417	19820418	chr2:19820418:G:A	rs114618313	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	19849939	19849940	chr2:19849940:A:G	rs751098	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	10.463584749058978	8.40631057015278	GCAATTATTTCCTAATTG
chr2	20136086	20136087	chr2:20136087:T:A	rs2881879	T	A	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	20439678	20439679	chr2:20439679:G:A	rs531548937	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	20570597	20570598	chr2:20570598:C:T	rs75493872	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.79900008027284	9.875591251209315	ATTATCATAAGGCAATTA
chr2	20625675	20625676	chr2:20625676:A:G	rs73916923	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	6.737222982117774	2.7677920057488974	CCCATTACAGTGCACTTG
chr2	20683300	20683301	chr2:20683301:A:T	rs11675422	A	T	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr2	20781899	20781900	chr2:20781900:C:T	rs577920223	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	9.170420104942473	8.346829360682293	CTAATTACTAAGTTATTA
chr2	21084756	21084757	chr2:21084757:A:G	rs73920520	A	G	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	21118397	21118398	chr2:21118398:C:T	rs767681946	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	9.152514390676323	7.955563365500914	CTATTTAAGATGTAATTA
chr2	21467504	21467505	chr2:21467505:T:C	rs13423690	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.659288602463796	4.68985762609492	GCCATTGGGTACAAATTA
chr2	21748883	21748884	chr2:21748884:G:T	rs11886762	G	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	22061894	22061895	chr2:22061895:G:T	rs328550	G	T	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	22110549	22110550	chr2:22110550:C:A	rs371364161	C	A	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	23285994	23285995	chr2:23285995:C:T	rs751029	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	23436434	23436435	chr2:23436435:G:A	rs17710394	G	A	G	Msx3.mouse_homeodomain_1	10	1	-	7.847941050881848	8.891913350755562	GCTATCACCACACAATTA
chr2	23466163	23466164	chr2:23466164:G:A	rs1530045	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr2	23988679	23988680	chr2:23988680:T:C	rs12616250	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	8.983504445092798	9.831347315973485	GTAATTAATCTGTATTTA
chr2	24558939	24558940	chr2:24558940:A:G	rs12618384	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr2	25170667	25170668	chr2:25170668:G:A	rs11678982	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	25257689	25257690	chr2:25257690:C:G	rs915301610	C	G	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	25528501	25528502	chr2:25528502:G:A	rs115947845	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	9.650115171463415	11.707389350369613	GTCATTATTTGCCGATTA
chr2	25701097	25701098	chr2:25701098:T:C	rs6546385	T	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	26179008	26179009	chr2:26179009:C:T	rs1434349104	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	26270728	26270729	chr2:26270729:C:A	rs6745226	C	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	26309622	26309623	chr2:26309623:G:T	rs2007556	G	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr2	26495889	26495890	chr2:26495890:C:A	rs72815939	C	A	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	27584756	27584757	chr2:27584757:G:A	rs13026621	G	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	27856907	27856908	chr2:27856908:A:G	rs4233720	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	27957189	27957190	chr2:27957190:G:A	rs138587720	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	28753176	28753177	chr2:28753177:A:G	rs116610187	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	28991095	28991096	chr2:28991096:C:G	rs116651559	C	G	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	28997432	28997433	chr2:28997433:C:T	rs74444058	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	29165897	29165898	chr2:29165898:G:A	rs13027767	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr2	29214964	29214965	chr2:29214965:C:G	rs1728831	C	G	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr2	29214975	29214976	chr2:29214976:G:A	rs12987571	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	7.444476935092722	5.999354271526239	GCTATAATCAACCAATCA
chr2	29268747	29268748	chr2:29268748:A:G	rs78541318	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	29271214	29271215	chr2:29271215:G:A	rs75141110	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	29397196	29397197	chr2:29397197:T:C	rs4477867	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	29397849	29397850	chr2:29397850:A:G	rs80253060	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	29618206	29618207	chr2:29618207:A:T	rs72862851	A	T	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	29618225	29618226	chr2:29618226:C:T	rs58541782	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	9.934828716288923	9.086985845408236	CCAATCCAGATGCAATTA
chr2	30255586	30255587	chr2:30255587:T:G	rs2362541	T	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	30269039	30269040	chr2:30269040:G:C	rs141934083	G	C	C	Msx3.mouse_homeodomain_1	11	1	+	8.611928859766415	8.697394400476679	TCACTAAAATGGTAATTA
chr2	30312039	30312040	chr2:30312040:C:T	rs35193589	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr2	30694416	30694417	chr2:30694417:A:C	rs111735982	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	7.727462603121178	4.843269546643803	ATTCTTAAGCTCCAATTA
chr2	30790983	30790984	chr2:30790984:C:T	rs141558852	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	30840725	30840726	chr2:30840726:A:G	rs10187733	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	11.20938444426136	8.641224847078156	GCAATTAGAATGTTATTA
chr2	30949657	30949658	chr2:30949658:G:A	rs10209534	G	A	g	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr2	31058850	31058851	chr2:31058851:G:A	rs72854858	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	31058867	31058868	chr2:31058868:C:G	rs115390885	C	G	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	31204005	31204006	chr2:31204006:A:C	rs4952059	A	C	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	31390382	31390383	chr2:31390383:A:G	rs206849	A	G	G	Msx3.mouse_homeodomain_1	17	1	+	8.062915237444923	5.49475564026172	TGAATTAACATTCCATTA
chr2	32277603	32277604	chr2:32277604:C:T	rs7580510	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	9.652214982755392	8.543705427590648	GCCATTAGCCATTAATTA
chr2	32720995	32720996	chr2:32720996:T:C	rs17012134	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	8.721360551231932	6.3283748087214295	GCCATTATGGAGTCATTA
chr2	32804251	32804252	chr2:32804252:T:G	rs11896237	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	6.777497196774024	3.893304140296648	CAAATTAGGTGCCAATGA
chr2	32851738	32851739	chr2:32851739:G:T	rs549444949	G	T	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr2	33214053	33214054	chr2:33214054:A:G	rs1377946	A	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	33430232	33430233	chr2:33430233:C:T	rs595178	C	T	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	33723680	33723681	chr2:33723681:A:G	rs935622	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr2	34307789	34307790	chr2:34307790:T:C	rs4670342	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	35501313	35501314	chr2:35501314:G:A	rs11695142	G	A	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr2	35510903	35510904	chr2:35510904:G:A	rs10175485	G	A	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	35715218	35715219	chr2:35715219:A:G	rs1518653	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	36131385	36131386	chr2:36131386:T:C	rs112225836	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	10.970614062516862	6.3825198434937125	ACGATTAGAACACAATTA
chr2	36262676	36262677	chr2:36262677:T:C	rs2551999	T	C	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	36403974	36403975	chr2:36403975:T:C	rs76325592	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	36426148	36426149	chr2:36426149:G:A	rs574712662	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	36555512	36555513	chr2:36555513:G:A	rs10178965	G	A	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	36737002	36737003	chr2:36737003:T:G	rs10490663	T	G	T	Msx3.mouse_homeodomain_1	10	1	+	9.091968541753825	8.508948894792471	ACCATGAAGATCCAATTA
chr2	36771613	36771614	chr2:36771614:T:G	rs6544038	T	G	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	36812218	36812219	chr2:36812219:C:A	rs13417089	C	A	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr2	37367172	37367173	chr2:37367173:A:G	rs77377312	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	9.1258805394598	6.557720942276597	CCAATTAATAGAAAATCA
chr2	37459407	37459408	chr2:37459408:T:C	rs17482317	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	37477501	37477502	chr2:37477502:T:C	rs12623449	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	8.742982513891452	6.226113885954373	TCAATTAAAACATATTTA
chr2	37531074	37531075	chr2:37531075:G:C	rs116412800	G	C	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr2	37626039	37626040	chr2:37626040:G:A	rs114814051	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	37999232	37999233	chr2:37999233:C:T	rs6544130	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr2	38093974	38093975	chr2:38093975:A:T	rs141932440	A	T	A	Msx3.mouse_homeodomain_1	6	1	+	11.211396531015502	7.6191143239029815	CCCATTATATTGAAATTA
chr2	38146946	38146947	chr2:38146947:C:T	rs12104947	C	T	C	Msx3.mouse_homeodomain_1	13	1	+	6.794252134839252	5.496036728476661	GTAATTAAGAAGCCACTA
chr2	38167432	38167433	chr2:38167433:G:T	rs11688391	G	T	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr2	38416560	38416561	chr2:38416561:C:G	rs10191991	C	G	G	Msx3.mouse_homeodomain_1	11	1	+	9.911452119910283	9.82598657920002	ACAATTTAATACGAATTA
chr2	38508387	38508388	chr2:38508388:C:T	rs17022828	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr2	38591107	38591108	chr2:38591108:C:T	rs12987111	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	7.645425010998371	6.821834266738189	CCAATTAATTCCTAAATA
chr2	38867315	38867316	chr2:38867316:C:G	rs73930372	C	G	C	Msx3.mouse_homeodomain_1	7	1	-	8.723453986161012	8.443382976779848	ACAATTAGGCATCACTTA
chr2	39034109	39034110	chr2:39034110:T:C	rs7583010	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	7.131500728661455	4.563341131478253	GCAATAGCATACCATTTA
chr2	39141710	39141711	chr2:39141711:T:A	rs79315816	T	A	T	Msx3.mouse_homeodomain_1	5	1	+	8.594772054161039	5.773370007004658	GCAATTATTTCCAAATTT
chr2	39609583	39609584	chr2:39609584:T:G	rs7575458	T	G	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	40402192	40402193	chr2:40402193:G:C	rs12328635	G	C	C	Msx3.mouse_homeodomain_1	2	1	+	10.797904463619716	10.932185650086069	CTGATTATATGCTAATTA
chr2	40469954	40469955	chr2:40469955:C:T	rs35139526	C	T	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	40841957	40841958	chr2:40841958:T:C	rs7597016	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	11.018555392523961	7.049124416155084	GCAATTACATTTGAATTA
chr2	40902529	40902530	chr2:40902530:G:C	rs10182003	G	C	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	41060140	41060141	chr2:41060141:T:A	rs741608	T	A	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	41400435	41400436	chr2:41400436:T:C	rs58271631	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	8.797116908218992	7.6873013708954	TTAATTCAGTTGTAATTA
chr2	41476025	41476026	chr2:41476026:G:C	rs12712766	G	C	G	Msx3.mouse_homeodomain_1	12	1	+	7.426403966146421	10.925786984762578	CCAATCATGTGAGAATTA
chr2	41733216	41733217	chr2:41733217:C:T	rs116037745	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	41735047	41735048	chr2:41735048:T:C	rs58498446	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	41779592	41779593	chr2:41779593:G:C	rs4602260	G	C	t	Msx3.mouse_homeodomain_1	7	1	+	12.980209833767208	12.700138824386045	GTAATTAGAAGCAAATTA
chr2	41828234	41828235	chr2:41828235:A:G	rs115432687	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	41828235	41828236	chr2:41828236:C:T	rs17531969	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	41860111	41860112	chr2:41860112:G:T	rs10167265	G	T	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	42030376	42030377	chr2:42030377:T:C	rs112365151	T	C	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	42383410	42383411	chr2:42383411:C:T	rs12615383	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr2	42388685	42388686	chr2:42388686:T:C	rs76072482	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr2	42867453	42867454	chr2:42867454:G:T	rs56054850	G	T	G	Msx3.mouse_homeodomain_1	0	1	+	8.092038224312352	6.901095970177561	GTTATTATGTTGCAATTT
chr2	42981187	42981188	chr2:42981188:T:C	rs4953702	T	C	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	43081865	43081866	chr2:43081866:G:A	rs774476863	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	43131987	43131988	chr2:43131988:T:C	rs12471190	T	C	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	43229630	43229631	chr2:43229631:T:C	rs138008706	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	8.043292057434396	7.713351104718298	ACACTTATTCTGAAATTA
chr2	43230123	43230124	chr2:43230124:G:A	rs745314393	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr2	43403319	43403320	chr2:43403320:C:T	rs17030751	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	43469413	43469414	chr2:43469414:C:A	rs13029044	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	7.8301315036916295	5.318822743922802	ACAATTAACCAACAAATA
chr2	43484528	43484529	chr2:43484529:T:C	rs28615946	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	11.150687963007151	10.258598930935904	TCAATTAGATTACCATTA
chr2	43524340	43524341	chr2:43524341:T:C	rs17030980	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	43790498	43790499	chr2:43790499:G:A	rs113037581	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	43958205	43958206	chr2:43958206:G:A	rs10206724	G	A	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	44082804	44082805	chr2:44082805:A:C	rs529795561	A	C	A	Msx3.mouse_homeodomain_1	2	1	+	8.004125847587616	5.621538406116892	TGAATCAAAAGGAAATTA
chr2	44112211	44112212	chr2:44112212:G:A	rs531389657	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr2	44705714	44705715	chr2:44705715:T:C	rs4145981	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	44937124	44937125	chr2:44937125:G:A	rs72616907	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	45085827	45085828	chr2:45085828:T:C	rs2959236	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	45333980	45333981	chr2:45333981:C:G	rs17033438	C	G	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr2	45405313	45405314	chr2:45405314:T:C	rs10490348	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	45595883	45595884	chr2:45595884:A:G	rs1878385	A	G	G	Msx3.mouse_homeodomain_1	6	1	-	9.854486702210352	9.201753102850713	GCAATCTGATGGCAATTA
chr2	45767125	45767126	chr2:45767126:C:T	rs150172435	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	45820225	45820226	chr2:45820226:T:C	rs57477096	T	C	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	45836297	45836298	chr2:45836298:T:G	rs6757514	T	G	T	Msx3.mouse_homeodomain_1	5	1	+	10.34961073306166	5.9070289555944955	GCTATTATAAGCCCATTA
chr2	46090951	46090952	chr2:46090952:T:C	rs74461210	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	46249885	46249886	chr2:46249886:A:G	rs78446731	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.91573777467863	1.8171920948094966	TCCATTGAAAATCCATTA
chr2	46257424	46257425	chr2:46257425:T:C	rs11895082	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	10.34557317113942	5.75747895211627	TTAATTAAACATCAATCA
chr2	46424484	46424485	chr2:46424485:G:C	rs4953372	G	C	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	46753899	46753900	chr2:46753900:T:C	rs13426735	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	9.406457369967583	8.399908037122376	CTCATTATACATTAATTA
chr2	46987671	46987672	chr2:46987672:G:T	rs6727529	G	T	T	Msx3.mouse_homeodomain_1	10	1	-	11.979304642418157	13.516848466266996	CTAATTAAAACAAAATTA
chr2	47251651	47251652	chr2:47251652:T:A	rs10169164	T	A	A	Msx3.mouse_homeodomain_1	8	1	-	7.772634412163006	6.735363939005458	GCAATTAGATGAGAATTT
chr2	47724511	47724512	chr2:47724512:T:C	rs78172075	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	10.954046980906774	8.38588738372357	CCAATTATTGAACCATTA
chr2	48070839	48070840	chr2:48070840:A:G	rs7592414	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	6.447043055723275	3.930174427786199	GCACTTACTAAGCACTCA
chr2	48113388	48113389	chr2:48113389:C:G	rs78543639	C	G	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr2	48174567	48174568	chr2:48174568:A:G	rs4953557	A	G	a	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr2	48205135	48205136	chr2:48205136:T:C	rs76556205	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.58886549969733	3.6194345233284535	GCTATTAGAAGTCAATAA
chr2	48456606	48456607	chr2:48456607:A:C	rs11902595	A	C	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	48525567	48525568	chr2:48525568:G:T	rs140011362	G	T	G	Msx3.mouse_homeodomain_1	3	1	+	7.216118107980333	6.058198744201119	GTAGTTAGCTCCAAATTA
chr2	48565428	48565429	chr2:48565429:T:C	rs2177489	T	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	48759939	48759940	chr2:48759940:T:C	rs2956359	T	C	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	48786449	48786450	chr2:48786450:G:A	rs148228497	G	A	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr2	48791700	48791701	chr2:48791701:C:G	rs79266609	C	G	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	48873509	48873510	chr2:48873510:A:G	rs12477968	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr2	48992075	48992076	chr2:48992076:G:A	rs13032037	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.238174069185018	7.129664514020274	GCAATTCTCTTTTAATTA
chr2	49018421	49018422	chr2:49018422:A:C	rs3788981	A	C	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr2	49033174	49033175	chr2:49033175:A:G	rs1553476	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	49404297	49404298	chr2:49404298:G:C	rs817044	G	C	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	49404297	49404298	chr2:49404298:G:T	chr2:49404298:G:T	G	T	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	49404305	49404306	chr2:49404306:C:G	rs817045	C	G	G	Msx3.mouse_homeodomain_1	17	1	-	9.256916148127358	7.238219164184052	CCACTTACTGAGCAATTG
chr2	49512436	49512437	chr2:49512437:T:C	rs7560377	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	9.295166344614204	4.707072125591054	TCAATTTAAAGCCAATTT
chr2	49687771	49687772	chr2:49687772:G:C	rs17180439	G	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	49863254	49863255	chr2:49863255:A:G	rs12476729	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	50006402	50006403	chr2:50006403:T:C	rs1159137	T	C	C	Msx3.mouse_homeodomain_1	13	1	-	8.174847206574544	6.117573027668349	GGCATTAGAGAGCAATTG
chr2	50476336	50476337	chr2:50476337:C:T	rs139555819	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	50585752	50585753	chr2:50585753:T:G	rs7584604	T	G	G	Msx3.mouse_homeodomain_1	8	1	-	13.382843478820952	12.463276654188395	CCCATCAAAAACCAATTA
chr2	50733247	50733248	chr2:50733248:T:C	rs860862	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	8.742869340949841	8.412928388233745	ACACTTATAGAAAAATTA
chr2	51508425	51508426	chr2:51508426:A:G	rs2698009	A	G	a	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr2	52073333	52073334	chr2:52073334:G:A	rs2355196	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr2	52083110	52083111	chr2:52083111:A:G	rs6713142	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr2	52115942	52115943	chr2:52115943:G:T	rs11125406	G	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	52595672	52595673	chr2:52595673:T:G	rs952261	T	G	G	Msx3.mouse_homeodomain_1	0	1	+	8.71496348237871	9.9059057365135	TTAATTAGGGTTAAATTA
chr2	52795024	52795025	chr2:52795025:A:C	rs11125445	A	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	52941868	52941869	chr2:52941869:G:T	rs62140318	G	T	T	Msx3.mouse_homeodomain_1	1	1	-	9.392024321803621	6.691734944863158	CCGATTGTTAATCAATTA
chr2	53147128	53147129	chr2:53147129:T:C	rs17267803	T	C	t	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	53148081	53148082	chr2:53148082:A:C	rs12995213	A	C	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr2	53189179	53189180	chr2:53189180:T:C	rs17044204	T	C	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	53211900	53211901	chr2:53211901:A:T	chr2:53211901:A:T	A	T	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	53252103	53252104	chr2:53252104:A:G	rs114404281	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.720870345140636	4.132776126117485	AAAATGATAATCCAATTA
chr2	53334449	53334450	chr2:53334450:G:A	rs12329155	G	A	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr2	53510046	53510047	chr2:53510047:C:T	rs78219166	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	8.204901427864364	9.211450760709571	TCACTTAAGAGACCATTA
chr2	53510069	53510070	chr2:53510070:G:T	rs77061320	G	T	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	53655029	53655030	chr2:53655030:T:C	rs2111851	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	53655036	53655037	chr2:53655037:A:G	rs2111852	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr2	53697166	53697167	chr2:53697167:C:T	rs4671529	C	T	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	54195243	54195244	chr2:54195244:A:G	rs698750	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	7.035327201339243	6.094783208953098	CCAGTCACAAACCAATTT
chr2	54290103	54290104	chr2:54290104:G:C	rs376200062	G	C	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	54397656	54397657	chr2:54397657:C:T	rs4671923	C	T	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr2	54397665	54397666	chr2:54397666:A:G	rs78805757	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	54471922	54471923	chr2:54471923:T:C	rs192685720	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	8.741264737592608	5.616315583998754	CTAATTATTAGCACATTA
chr2	54499960	54499961	chr2:54499961:C:A	rs144186418	C	A	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr2	54519228	54519229	chr2:54519229:G:T	rs4671947	G	T	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	54571063	54571064	chr2:54571064:A:G	rs116489573	A	G	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	54792297	54792298	chr2:54792298:C:T	rs2063391	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	54854238	54854239	chr2:54854239:C:T	rs12713280	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr2	55009525	55009526	chr2:55009526:G:A	rs115273254	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr2	55156605	55156606	chr2:55156606:C:T	rs7608118	C	T	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	55259627	55259628	chr2:55259628:A:G	rs13000786	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr2	55693959	55693960	chr2:55693960:G:C	rs1008689217	G	C	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	55693980	55693981	chr2:55693981:C:G	rs782584	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	7.819904221290167	4.55555536426185	CCTATCAGAACGCGATTA
chr2	55693998	55693999	chr2:55693999:G:A	rs72812149	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	55761545	55761546	chr2:55761546:T:G	rs11694759	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	8.540005964664903	3.953149383538396	GAAATTGAAAAACACTTA
chr2	55896195	55896196	chr2:55896196:C:T	rs1077778	C	T	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	55902734	55902735	chr2:55902735:A:C	rs3791661	A	C	a	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr2	55902744	55902745	chr2:55902745:T:G	rs3791660	T	G	G	Msx3.mouse_homeodomain_1	13	1	-	8.825739971393414	5.94154691491604	GTGATTATAATAGAATTA
chr2	56224687	56224688	chr2:56224688:A:G	rs2193474	A	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	56226452	56226453	chr2:56226453:C:T	rs1160648	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	56304163	56304164	chr2:56304164:A:G	rs6754471	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	56339034	56339035	chr2:56339035:A:G	rs2216329	A	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr2	56526165	56526166	chr2:56526166:A:G	rs1017268	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	56789256	56789257	chr2:56789257:A:G	rs2193624	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	7.767144571694577	5.198984974511375	GTAATTAACAGGTGTTTA
chr2	57105288	57105289	chr2:57105289:T:C	rs11888240	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	57164009	57164010	chr2:57164010:T:G	rs17798206	T	G	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr2	57175189	57175190	chr2:57175190:G:C	rs877994	G	C	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	57371229	57371230	chr2:57371230:T:C	rs7591579	T	C	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	57601278	57601279	chr2:57601279:C:A	rs57173959	C	A	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr2	58762744	58762745	chr2:58762745:G:A	rs77217059	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr2	58842574	58842575	chr2:58842575:G:T	rs62140569	G	T	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr2	59033432	59033433	chr2:59033433:A:G	rs13021209	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	59217539	59217540	chr2:59217540:C:T	rs4672279	C	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	59294969	59294970	chr2:59294970:G:C	rs1483239172	G	C	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr2	59308397	59308398	chr2:59308398:C:T	rs17050111	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	7.30368579101916	5.858563127452677	CTCATTGAAAACCGATCA
chr2	59631228	59631229	chr2:59631229:T:C	rs13019632	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr2	59664849	59664850	chr2:59664850:A:C	rs138835176	A	C	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	60289591	60289592	chr2:60289592:C:T	rs146803512	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr2	60289614	60289615	chr2:60289615:G:C	chr2:60289615:G:C	G	C	G	Msx3.mouse_homeodomain_1	0	1	-	9.924236895644896	10.291588405519509	CAAATTAAGCTATAATTA
chr2	60851804	60851805	chr2:60851805:C:T	rs1177212	C	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	60883105	60883106	chr2:60883106:G:C	rs143332579	G	C	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	61636291	61636292	chr2:61636292:T:C	rs12151427	T	C	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	61887785	61887786	chr2:61887786:T:A	rs182490942	T	A	T	Msx3.mouse_homeodomain_1	11	1	-	10.776175644620327	10.348361791522294	CAAATCAAGAAACAATTA
chr2	61962865	61962866	chr2:61962866:C:A	rs7579874	C	A	A	Msx3.mouse_homeodomain_1	13	1	-	10.451728290995863	8.326594007062095	CCAATTATAGTTTGATTA
chr2	62071316	62071317	chr2:62071317:G:A	rs13426822	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	62222627	62222628	chr2:62222628:T:A	rs78968142	T	A	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr2	62382787	62382788	chr2:62382788:T:C	rs77120722	T	C	T	Msx3.mouse_homeodomain_1	12	1	+	7.798952770411995	9.244075433978479	CCAATTACCTCATAATTT
chr2	62569735	62569736	chr2:62569736:T:C	rs17517026	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	8.271448030833309	7.194856859896835	TCATTTAACCATCAATTA
chr2	64187680	64187681	chr2:64187681:A:G	rs2422115	A	G	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	64272388	64272389	chr2:64272389:A:G	rs2698526	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	64526599	64526600	chr2:64526600:C:T	rs1362913	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	64917693	64917694	chr2:64917694:T:C	rs565857023	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	7.620487007043308	6.613937674198099	TCATTTAAAGAGCACTTA
chr2	64917704	64917705	chr2:64917705:G:T	chr2:64917705:G:T	G	T	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	64922740	64922741	chr2:64922741:G:T	rs6747398	G	T	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr2	64922767	64922768	chr2:64922768:C:T	rs960265098	C	T	C	Msx3.mouse_homeodomain_1	16	1	+	7.084283160312469	10.209232313906323	GTAATTCGTAGCCAATCA
chr2	65395839	65395840	chr2:65395840:A:G	rs6752083	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr2	65546577	65546578	chr2:65546578:C:T	rs12614525	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	65578975	65578976	chr2:65578976:A:T	rs12466804	A	T	A	Msx3.mouse_homeodomain_1	3	1	+	10.359184434829231	5.231834094681139	AGAATTAAAAAAAAATTA
chr2	65592920	65592921	chr2:65592921:T:G	rs1115847	T	G	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr2	65608911	65608912	chr2:65608912:C:A	rs77558083	C	A	C	Msx3.mouse_homeodomain_1	11	1	-	6.798308563936097	5.173543685662651	GCAATTGGCCCGCATTTA
chr2	65708258	65708259	chr2:65708259:C:T	rs6546174	C	T	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	66070869	66070870	chr2:66070870:A:G	rs17541798	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.2947643900410375	0.38729915311703267	GCAATTAATCCAGAATTG
chr2	66508335	66508336	chr2:66508336:G:A	rs57377681	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	66508366	66508367	chr2:66508367:C:G	rs4605359	C	G	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	66531289	66531290	chr2:66531290:A:G	rs6710341	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	66573841	66573842	chr2:66573842:C:A	rs731188	C	A	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr2	66635653	66635654	chr2:66635654:A:G	rs72808818	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	66690584	66690585	chr2:66690585:C:T	rs7565020	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	66690626	66690627	chr2:66690627:C:A	rs72901114	C	A	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	66691573	66691574	chr2:66691574:C:T	rs114665863	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	66691576	66691577	chr2:66691577:T:C	chr2:66691577:T:C	T	C	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	66889822	66889823	chr2:66889823:C:T	rs146175640	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.478285886366216	7.630443015485532	ACAATTAGAAACTGTTTA
chr2	67013897	67013898	chr2:67013898:G:A	rs12474155	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr2	67013929	67013930	chr2:67013930:A:G	rs116838683	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	67050966	67050967	chr2:67050967:C:T	rs4671770	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	7.482253667970384	6.285302642794973	GTAATTAGCTCGCACTTG
chr2	67171407	67171408	chr2:67171408:A:G	rs7579373	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	6.927286965934488	2.9578559895656102	GCCATCATCAAACACTTA
chr2	67528732	67528733	chr2:67528733:C:T	rs80178729	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	67625703	67625704	chr2:67625704:A:G	rs6721459	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	10.15052032278323	7.757534580272728	AAAATTGAATATCAATTA
chr2	67854362	67854363	chr2:67854363:G:T	rs905494	G	T	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	67877047	67877048	chr2:67877048:T:G	rs13015446	T	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	67938504	67938505	chr2:67938505:C:T	rs10496154	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	68412140	68412141	chr2:68412141:G:A	rs13011577	G	A	A	Msx3.mouse_homeodomain_1	0	1	-	7.232603362308336	6.409012618048156	CCACTTGACCTCCCATTA
chr2	68565843	68565844	chr2:68565844:G:A	rs6708116	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	7.805233439405796	6.360110775839314	GAAATAATCAGGCGATTA
chr2	69184384	69184385	chr2:69184385:A:C	rs6732795	A	C	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	69345896	69345897	chr2:69345897:T:C	rs6722492	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	10.664284045618398	8.22220681868684	GTAATTACATATGAATTA
chr2	69397445	69397446	chr2:69397446:C:T	rs7562773	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr2	69650650	69650651	chr2:69650651:T:G	rs7568057	T	G	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr2	69660750	69660751	chr2:69660751:G:A	rs1396799	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	69660754	69660755	chr2:69660755:A:C	rs929522535	A	C	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	69678267	69678268	chr2:69678268:C:G	rs6546540	C	G	G	Msx3.mouse_homeodomain_1	0	1	-	8.782871163121344	8.415519653246731	GTCATTAAATAATAATTT
chr2	69692554	69692555	chr2:69692555:C:T	rs72901404	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	8.800284990566066	7.691775435401323	GCAATATGCAAACAATTA
chr2	70382417	70382418	chr2:70382418:A:G	rs17428634	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	70448965	70448966	chr2:70448966:G:A	rs3732253	G	A	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	71385332	71385333	chr2:71385333:C:T	rs2670710	C	T	c	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr2	71971615	71971616	chr2:71971616:A:G	rs2138785	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	8.51434331340505	1.606878076481045	ATAATCAAGAAGTAATCA
chr2	72394917	72394918	chr2:72394918:G:T	rs114998891	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	7.767439999450906	5.25613123968208	CCACTTAAAATGCACTTT
chr2	72695001	72695002	chr2:72695002:T:C	rs73945612	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	72695024	72695025	chr2:72695025:A:G	rs75799441	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.7873655130631105	2.199271294039961	CTACTCCACAAGCAATTA
chr2	73414943	73414944	chr2:73414944:T:A	rs6546831	T	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr2	73925051	73925052	chr2:73925052:G:C	rs831524	G	C	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr2	74645685	74645686	chr2:74645686:T:C	rs57326441	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	75323274	75323275	chr2:75323275:C:T	rs12151808	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.361728679492124	9.438319850428602	CCCATTAGTCGCCCATTA
chr2	75336536	75336537	chr2:75336537:A:T	rs1076474	A	T	T	Msx3.mouse_homeodomain_1	9	1	-	8.979856894611814	9.393998166484895	GTAATCATTTAAAAATTA
chr2	75810383	75810384	chr2:75810384:C:T	rs62150882	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr2	77009250	77009251	chr2:77009251:T:A	rs7604936	T	A	T	Msx3.mouse_homeodomain_1	10	1	-	9.535728951016086	9.042157427040966	GAAATCATACAGTAATTA
chr2	77057430	77057431	chr2:77057431:T:C	rs1446690	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	12.162317767371231	8.192886791002355	CCAATGATAATCCAATTA
chr2	77410418	77410419	chr2:77410419:T:C	rs415974	T	C	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	77484053	77484054	chr2:77484054:A:C	rs2204915	A	C	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr2	77590314	77590315	chr2:77590315:T:G	rs4322869	T	G	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	78324594	78324595	chr2:78324595:T:C	rs10164603	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	8.291677308640908	1.3842120717169029	TCAATTAATTTCAAATTC
chr2	78532147	78532148	chr2:78532148:T:C	rs10171212	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	78551398	78551399	chr2:78551399:G:T	rs55957542	G	T	G	Msx3.mouse_homeodomain_1	11	1	-	8.586523399830645	7.304106833944973	TTCATTAGTAACCAATTT
chr2	79012151	79012152	chr2:79012152:T:C	rs405595	T	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	79012173	79012174	chr2:79012174:A:G	rs436569	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.010332991380047	4.422238772356898	TCCCTTAAAATCCAATTG
chr2	79827056	79827057	chr2:79827057:G:A	rs11689616	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	79860533	79860534	chr2:79860534:C:T	rs57037842	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	81662176	81662177	chr2:81662177:C:G	rs10496259	C	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	82007440	82007441	chr2:82007441:C:T	rs62149856	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	83596440	83596441	chr2:83596441:G:T	rs62155698	G	T	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	84322761	84322762	chr2:84322762:G:T	rs76410509	G	T	G	Msx3.mouse_homeodomain_1	10	1	+	8.950838907991695	9.53385855495305	GTAATTGAAGGGCTATTA
chr2	84345315	84345316	chr2:84345316:C:T	rs2364925	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	84939911	84939912	chr2:84939912:T:C	rs963422266	T	C	t	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	84939915	84939916	chr2:84939916:T:C	rs4832129	T	C	N	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr2	84976095	84976096	chr2:84976096:A:G	rs7571294	A	G	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	85439293	85439294	chr2:85439294:G:T	rs187149368	G	T	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	85439334	85439335	chr2:85439335:A:T	rs143056239	A	T	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	85814700	85814701	chr2:85814701:C:T	rs11673983	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	11.17451801658543	10.326675145704744	TCTATTAAAATCAAATTA
chr2	85934523	85934524	chr2:85934524:A:G	rs111908061	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr2	86257068	86257069	chr2:86257069:A:G	rs7583074	A	G	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	86794621	86794622	chr2:86794622:C:T	rs34198915	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr2	86794634	86794635	chr2:86794635:T:C	rs34492196	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	87476707	87476708	chr2:87476708:A:G	rs72938975	A	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr2	87487417	87487418	chr2:87487418:A:G	rs59903088	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	8.5152245026064	8.185283549890304	TTTATTATCCAGTAATTA
chr2	87626647	87626648	chr2:87626648:G:A	rs4972129	G	A	G	Msx3.mouse_homeodomain_1	8	1	-	6.92497111170272	6.807267463177724	GCAGTTAGCGGGGAATTA
chr2	87986550	87986551	chr2:87986551:A:G	rs11687061	A	G	a	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	88022174	88022175	chr2:88022175:T:C	rs144955734	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	88398519	88398520	chr2:88398520:G:A	chr2:88398520:G:A	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	88398519	88398520	chr2:88398520:G:C	rs78011579	G	C	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	88600139	88600140	chr2:88600140:G:A	rs55991760	G	A	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	88627588	88627589	chr2:88627589:A:C	rs540201768	A	C	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr2	88627838	88627839	chr2:88627839:C:G	rs534452088	C	G	C	Msx3.mouse_homeodomain_1	11	1	-	9.008730656776581	9.094196197486841	CCAATCAAGAGGCAGTTA
chr2	91749287	91749288	chr2:91749288:A:C	rs4588232	A	C	.	Msx3.mouse_homeodomain_1	17	1	+	11.826574276972988	7.239717695846478	CTAATTATCTTGAAATTA
chr2	93641833	93641834	chr2:93641834:A:C	rs1161703508	A	C	.	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	96534309	96534310	chr2:96534310:G:A	rs72827935	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr2	96791276	96791277	chr2:96791277:G:T	rs62152781	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	9.781212064711175	7.269903304942348	CTCATTAAAATACAATTT
chr2	97093215	97093216	chr2:97093216:G:A	rs1257101	G	A	.	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	97768452	97768453	chr2:97768453:T:C	rs540050989	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	11.27497180917597	6.686877590152819	CTTCTTAAAAACCAATTA
chr2	98512673	98512674	chr2:98512674:T:C	rs11902825	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	98851877	98851878	chr2:98851878:T:C	rs1949424	T	C	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	99985039	99985040	chr2:99985040:C:T	rs73964395	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr2	100236804	100236805	chr2:100236805:G:A	rs10496346	G	A	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	100299166	100299167	chr2:100299167:T:C	rs4851286	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	100350487	100350488	chr2:100350488:A:T	rs11678148	A	T	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	100456598	100456599	chr2:100456599:A:G	rs11688206	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	100456617	100456618	chr2:100456618:T:C	rs13418182	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	11.95550628282965	5.856960602960517	ATAATTAAAGGGAAATTA
chr2	100621388	100621389	chr2:100621389:A:C	rs2309850	A	C	C	Msx3.mouse_homeodomain_1	2	1	+	10.261320128655289	7.878732687184564	AGAATCAACATGCAATTA
chr2	100669786	100669787	chr2:100669787:T:C	rs4851361	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	8.44978861679861	7.557699584727362	TCAATTCAGTGGCGATTA
chr2	100682648	100682649	chr2:100682649:C:T	rs6708355	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	101436557	101436558	chr2:101436558:G:C	rs938303	G	C	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	101558579	101558580	chr2:101558580:A:T	rs58947866	A	T	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr2	101570368	101570369	chr2:101570369:T:C	rs79113397	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	101653751	101653752	chr2:101653752:G:T	rs1396789	G	T	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr2	101804278	101804279	chr2:101804279:G:A	rs116496488	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	102029485	102029486	chr2:102029486:C:A	rs115815090	C	A	c	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	102112255	102112256	chr2:102112256:C:T	rs1861283	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	102112268	102112269	chr2:102112269:G:C	rs1861282	G	C	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	102297753	102297754	chr2:102297754:A:G	rs11690644	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	102848908	102848909	chr2:102848909:C:G	rs138112614	C	G	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	103401604	103401605	chr2:103401605:C:T	rs7582966	C	T	T	Msx3.mouse_homeodomain_1	0	1	-	12.761400751666514	11.65289119650177	GCACTTAAAAACCCATTA
chr2	103402601	103402602	chr2:103402602:C:T	rs78031629	C	T	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	104405289	104405290	chr2:104405290:C:T	rs2139397	C	T	T	Msx3.mouse_homeodomain_1	5	1	+	7.704359768203845	10.097345510714344	GCCATCAATTATCCATTA
chr2	104864983	104864984	chr2:104864984:T:C	rs1159964	T	C	C	Msx3.mouse_homeodomain_1	0	1	-	8.34008501679977	9.448594571964515	ACATTTAAAATGCAATTT
chr2	105215735	105215736	chr2:105215736:A:C	rs11683715	A	C	C	Msx3.mouse_homeodomain_1	13	1	+	8.54644892130374	5.662255864826365	GCAATTAAGGGGGAATTT
chr2	105247806	105247807	chr2:105247807:A:C	rs34670587	A	C	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr2	105294055	105294056	chr2:105294056:G:A	rs1030877	G	A	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	105389344	105389345	chr2:105389345:T:C	rs149169786	T	C	T	Msx3.mouse_homeodomain_1	11	1	-	10.68689703751167	11.883848062687079	CCAATAACTGAACAATTA
chr2	105393394	105393395	chr2:105393395:G:A	rs12614625	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	105436496	105436497	chr2:105436497:T:A	rs1518609	T	A	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	105541931	105541932	chr2:105541932:T:A	rs4241220	T	A	T	Msx3.mouse_homeodomain_1	16	1	+	10.692910281191988	6.808072353668929	GCAATATACTAGCAATTA
chr2	105722811	105722812	chr2:105722812:C:G	rs72823377	C	G	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	105799654	105799655	chr2:105799655:A:G	rs12464067	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr2	105886128	105886129	chr2:105886129:T:A	rs2033008	T	A	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	106280474	106280475	chr2:106280475:G:A	rs1963915	G	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	106996178	106996179	chr2:106996179:T:G	rs1524292	T	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr2	107071547	107071548	chr2:107071548:A:C	rs68003750	A	C	C	Msx3.mouse_homeodomain_1	8	1	+	7.955728541456348	7.036161716823794	TTCATTGGAAAGAAATTA
chr2	107258542	107258543	chr2:107258543:G:A	rs115483451	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	107264123	107264124	chr2:107264124:A:T	rs6713136	A	T	T	Msx3.mouse_homeodomain_1	0	1	+	7.4256126697737	7.343179970803653	ACAATTGTTAACCCATTG
chr2	107809352	107809353	chr2:107809353:G:A	rs17269251	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	8.10435439917282	9.180945570109298	CTAATTATAGGCCACTTG
chr2	108033167	108033168	chr2:108033168:A:C	rs10206308	A	C	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	108350330	108350331	chr2:108350331:C:A	rs116312286	C	A	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	108776284	108776285	chr2:108776285:A:G	rs1649329	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr2	108776320	108776321	chr2:108776321:C:G	rs1649328	C	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	108803440	108803441	chr2:108803441:A:T	rs186799043	A	T	a	Msx3.mouse_homeodomain_1	15	1	-	10.25274709597875	4.173833676620893	ACAATTAAAAAAAAATTT
chr2	108982799	108982800	chr2:108982800:G:A	rs260674	G	A	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	109153956	109153957	chr2:109153957:C:T	rs76609641	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	109331296	109331297	chr2:109331297:A:G	rs142954029	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	109645855	109645856	chr2:109645856:T:C	rs72826820	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	109680598	109680599	chr2:109680599:T:C	rs982788145	T	C	t	Msx3.mouse_homeodomain_1	5	1	+	8.119438907375738	5.726453164865236	ATAGTTAACAACCACTTA
chr2	111296539	111296540	chr2:111296540:T:C	rs4849544	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	7.66770395490235	6.727159962516205	CCTATTGTAATACGATTA
chr2	111954920	111954921	chr2:111954921:T:A	rs13386914	T	A	a	Msx3.mouse_homeodomain_1	14	1	-	10.92324391491708	6.596483563567525	AAAATTAAAAAAAAATTA
chr2	112048605	112048606	chr2:112048606:G:A	rs11123109	G	A	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	112310806	112310807	chr2:112310807:G:C	rs4456711	G	C	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	113351801	113351802	chr2:113351802:C:T	rs1867866	C	T	.	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	113796663	113796664	chr2:113796664:C:T	rs10496453	C	T	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	115036548	115036549	chr2:115036549:G:T	rs1396936	G	T	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	115214332	115214333	chr2:115214333:C:T	rs72839255	C	T	c	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr2	115327125	115327126	chr2:115327126:A:G	rs11678564	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr2	115473498	115473499	chr2:115473499:T:C	rs10496492	T	C	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr2	115481330	115481331	chr2:115481331:C:G	rs11123307	C	G	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	115505714	115505715	chr2:115505715:C:T	rs13003256	C	T	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	116366522	116366523	chr2:116366523:A:T	rs76613651	A	T	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr2	117436749	117436750	chr2:117436750:G:C	rs1474014	G	C	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	118120723	118120724	chr2:118120724:A:G	rs17047778	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	10.580384053100648	9.639840060714501	ACGATAAACATGCAATTA
chr2	118183632	118183633	chr2:118183633:T:C	rs3912498	T	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	118464715	118464716	chr2:118464716:G:T	rs72840859	G	T	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	118804719	118804720	chr2:118804720:T:A	rs4241151	T	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr2	118808982	118808983	chr2:118808983:C:A	rs10191670	C	A	A	Msx3.mouse_homeodomain_1	9	1	+	7.438681007779169	8.744911311723499	CAAATCAGACAGCAATCA
chr2	118849785	118849786	chr2:118849786:A:G	rs186585454	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr2	118880569	118880570	chr2:118880570:C:G	rs113032687	C	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	119462220	119462221	chr2:119462221:C:T	rs2254122	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	7.693008703966487	6.845165833085802	CCAATCAATGAGCCATCA
chr2	119491797	119491798	chr2:119491798:G:A	rs72834818	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr2	119491805	119491806	chr2:119491806:C:T	rs376995324	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	119598853	119598854	chr2:119598854:C:T	rs750345328	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr2	120014057	120014058	chr2:120014058:C:T	rs868108353	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	7.453119431646198	6.2561684064707865	GTAATTCAACAGCAGTTA
chr2	120014167	120014168	chr2:120014168:A:C	chr2:120014168:A:C	A	C	-	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	120377018	120377019	chr2:120377019:T:C	rs7602467	T	C	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr2	120544822	120544823	chr2:120544823:C:T	rs28416518	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	120662363	120662364	chr2:120662364:T:C	rs78311683	T	C	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr2	120743641	120743642	chr2:120743642:A:C	rs707484	A	C	C	Msx3.mouse_homeodomain_1	3	1	+	8.307953518019257	5.427779153486358	GCAATATAAAGATAATTA
chr2	120786739	120786740	chr2:120786740:C:T	rs2053989	C	T	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	121326851	121326852	chr2:121326852:G:A	rs2580347	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	6.789950167659829	5.344827504093348	GCCTTTAAGAGGCGATTA
chr2	121333672	121333673	chr2:121333673:G:T	rs113437595	G	T	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	121501475	121501476	chr2:121501476:C:T	rs75389191	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	122055129	122055130	chr2:122055130:C:T	rs747575725	C	T	C	Msx3.mouse_homeodomain_1	5	1	+	9.141895124342437	11.534880866852937	TCAATCGACTTGTAATTA
chr2	122385054	122385055	chr2:122385055:A:C	rs13025334	A	C	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	123731384	123731385	chr2:123731385:A:C	rs11890550	A	C	A	Msx3.mouse_homeodomain_1	5	1	-	9.21711457174731	4.7745327942801445	CTGATTATACAGCAATCA
chr2	124025354	124025355	chr2:124025355:T:C	rs77182849	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.282581913030213	2.694487694007063	CAAATCCAAACCCAATTA
chr2	124025382	124025383	chr2:124025383:G:A	rs373653991	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	124523252	124523253	chr2:124523253:A:T	rs882950	A	T	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	124984046	124984047	chr2:124984047:A:G	rs6707745	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	125167263	125167264	chr2:125167264:T:C	rs12711702	T	C	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr2	127168604	127168605	chr2:127168605:T:A	rs75631363	T	A	T	Msx3.mouse_homeodomain_1	4	1	+	10.471090321300403	3.5660687755643248	ATAATTAAAAAATAATTT
chr2	127471321	127471322	chr2:127471322:C:T	rs10496663	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	127823651	127823652	chr2:127823652:C:T	rs6743767	C	T	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr2	127906504	127906505	chr2:127906505:C:A	rs1051531869	C	A	C	Msx3.mouse_homeodomain_1	9	1	+	8.895182615939326	10.201412919883659	GTAATTAAACTGTCATTG
chr2	128403048	128403049	chr2:128403049:C:T	rs17216242	C	T	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	128622315	128622316	chr2:128622316:C:T	rs549073484	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	128756412	128756413	chr2:128756413:G:C	rs4497823	G	C	g	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	128756440	128756441	chr2:128756441:A:G	rs4254457	A	G	g	Msx3.mouse_homeodomain_1	13	1	+	7.630403486481531	5.573129307575335	GGCATTGAGCTCCAATTA
chr2	128786805	128786806	chr2:128786806:G:A	rs189049643	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	129129213	129129214	chr2:129129214:A:T	rs1519451	A	T	A	Msx3.mouse_homeodomain_1	16	1	+	8.62702338793084	12.5118613154539	GAAATTAGAATTCAATAA
chr2	129334595	129334596	chr2:129334596:G:A	rs17049356	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	129634451	129634452	chr2:129634452:G:A	rs3109319	G	A	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	129803425	129803426	chr2:129803426:T:C	rs77090329	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	7.9871570401486665	7.095068008077419	ACAATTAAATGCAGATTT
chr2	130279798	130279799	chr2:130279799:G:C	rs73959994	G	C	G	Msx3.mouse_homeodomain_1	12	1	-	8.405729814208858	4.9063467955927	GCCATCAAAAGGCTATTA
chr2	130300861	130300862	chr2:130300862:G:A	rs4396762	G	A	A	Msx3.mouse_homeodomain_1	4	1	+	8.73337402742536	7.486341733638976	GAAAGTAAAGTCCAATTA
chr2	130824581	130824582	chr2:130824582:C:G	rs151180479	C	G	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	132277331	132277332	chr2:132277332:A:T	rs149770187	A	T	.	Msx3.mouse_homeodomain_1	6	1	+	7.511910785654989	3.91962857854247	ACAATAAACAAGCAAATA
chr2	132469479	132469480	chr2:132469480:A:G	rs34075312	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr2	133394315	133394316	chr2:133394316:T:G	rs13408835	T	G	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	133836175	133836176	chr2:133836176:A:G	rs78051227	A	G	A	Msx3.mouse_homeodomain_1	0	1	-	12.693257722006816	13.516848466266996	TTAATTAAAAAAAAATTA
chr2	133942824	133942825	chr2:133942825:G:T	rs77694727	G	T	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	134073546	134073547	chr2:134073547:C:A	rs1257370	C	A	A	Msx3.mouse_homeodomain_1	13	1	+	9.200211362009206	12.084404418486582	GCAATTATTATACCATTG
chr2	134262719	134262720	chr2:134262720:A:T	rs7596803	A	T	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	134678795	134678796	chr2:134678796:A:C	rs1104802	A	C	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	134866437	134866438	chr2:134866438:A:C	rs3814358	A	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	134989382	134989383	chr2:134989383:C:T	rs114867030	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	135072791	135072792	chr2:135072792:A:G	rs75552841	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	10.467613573069091	7.950744945132013	TTAATTAGGCAGAAATTA
chr2	136138758	136138759	chr2:136138759:A:T	rs78135163	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr2	136232802	136232803	chr2:136232803:T:C	rs62158785	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	136328027	136328028	chr2:136328028:A:G	rs7570134	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	136328536	136328537	chr2:136328537:C:T	rs4073037	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr2	136382104	136382105	chr2:136382105:A:G	rs16833938	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	136382118	136382119	chr2:136382119:T:C	rs6756808	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	8.238521758636537	7.346432726565289	GCACTTAAATAGCAACTA
chr2	136382128	136382129	chr2:136382129:C:T	rs6738952	C	T	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	136382136	136382137	chr2:136382137:C:T	rs6739031	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	136385044	136385045	chr2:136385045:C:T	rs189667140	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	136385056	136385057	chr2:136385057:T:C	rs11674348	T	C	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	136424090	136424091	chr2:136424091:C:T	rs12624019	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	6.561243161677969	5.116120498111488	CCAGTTAACATGCACTTG
chr2	136858878	136858879	chr2:136858879:G:A	rs13425575	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	137117359	137117360	chr2:137117360:G:T	rs10490742	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	137172199	137172200	chr2:137172200:T:C	rs116205366	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr2	137172203	137172204	chr2:137172204:C:A	rs35138056	C	A	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	137206525	137206526	chr2:137206526:T:G	rs13388625	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	10.203252845584213	7.319059789106837	TCAATCCAAATCCAATTA
chr2	137643114	137643115	chr2:137643115:C:T	rs10178306	C	T	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	137693856	137693857	chr2:137693857:A:C	rs58130231	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	8.574929672569596	1.6674644356455892	GTAATTGTGAATCCATTA
chr2	137693886	137693887	chr2:137693887:G:A	rs13388919	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	137938161	137938162	chr2:137938162:C:G	rs1840644	C	G	C	Msx3.mouse_homeodomain_1	12	1	+	10.196060389498857	6.696677370882699	CAAATAAAGGTCCAATTA
chr2	137945081	137945082	chr2:137945082:G:A	rs3100712	G	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	138016825	138016826	chr2:138016826:G:A	rs146940234	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	138023361	138023362	chr2:138023362:T:C	rs17645700	T	C	T	Msx3.mouse_homeodomain_1	12	1	-	8.628855541020958	7.640781282173626	TCAATTACTAATAGATTA
chr2	138676798	138676799	chr2:138676799:T:G	rs13012479	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	8.828726553821067	6.446139112350342	TCAATTAACCATTAATCA
chr2	139225678	139225679	chr2:139225679:T:G	rs7607253	T	G	T	Msx3.mouse_homeodomain_1	10	1	+	8.689430532593548	8.106410885632194	CCACTTACTGTATAATTA
chr2	139324983	139324984	chr2:139324984:T:C	rs344891	T	C	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	139994485	139994486	chr2:139994486:C:T	rs62171523	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	140270356	140270357	chr2:140270357:A:G	rs3748865	A	G	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr2	140567563	140567564	chr2:140567564:C:T	rs11678976	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr2	141103488	141103489	chr2:141103489:T:A	rs1882641	T	A	T	Msx3.mouse_homeodomain_1	2	1	-	8.41533405167383	5.259906433461209	GTACTTATATCCCAATTT
chr2	141106225	141106226	chr2:141106226:C:T	rs12474088	C	T	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr2	141595869	141595870	chr2:141595870:C:T	rs62166490	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	141911916	141911917	chr2:141911917:T:C	rs916466	T	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	141911919	141911920	chr2:141911920:A:G	rs916467	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr2	142607012	142607013	chr2:142607013:C:T	rs16857723	C	T	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr2	142814808	142814809	chr2:142814809:T:C	rs6736433	T	C	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr2	142857656	142857657	chr2:142857657:T:C	rs1473288	T	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	142981078	142981079	chr2:142981079:G:A	rs11686073	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	143078178	143078179	chr2:143078179:C:G	rs79916852	C	G	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr2	143585174	143585175	chr2:143585175:G:T	rs4662341	G	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	144357694	144357695	chr2:144357695:A:G	rs76098665	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	145065210	145065211	chr2:145065211:G:A	rs12691704	G	A	A	Msx3.mouse_homeodomain_1	4	1	-	7.255633895322181	13.354179575191313	GCAACTAATACGAAATTA
chr2	145984461	145984462	chr2:145984462:G:A	rs16825861	G	A	g	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	146625123	146625124	chr2:146625124:T:C	rs12620283	T	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	146990398	146990399	chr2:146990399:G:C	rs933477555	G	C	G	Msx3.mouse_homeodomain_1	10	1	+	8.171146825789465	7.710194172877104	GCAATCACATGTCAATTT
chr2	147032716	147032717	chr2:147032717:A:G	rs16826756	A	G	A	Msx3.mouse_homeodomain_1	3	1	-	7.416313625047597	9.663489600662789	GTATTTATGTAGCAATTG
chr2	148509384	148509385	chr2:148509385:T:G	rs16828700	T	G	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	148885286	148885287	chr2:148885287:A:G	rs11894928	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	8.78436925421222	6.267500626275143	CCAGTCATATCCCAATTA
chr2	148909411	148909412	chr2:148909412:T:G	rs72866027	T	G	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr2	149132396	149132397	chr2:149132397:G:T	rs1404683	G	T	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	149141443	149141444	chr2:149141444:G:A	rs184866713	G	A	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr2	149152752	149152753	chr2:149152753:T:G	rs387667	T	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr2	149161430	149161431	chr2:149161431:T:C	rs77254884	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	149602807	149602808	chr2:149602808:A:G	rs149909735	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	8.932148909969658	6.8748747310634615	GCAATAATATGTAAATTA
chr2	149744582	149744583	chr2:149744583:T:G	rs16827410	T	G	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	149748081	149748082	chr2:149748082:T:A	rs10490077	T	A	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	150137930	150137931	chr2:150137931:G:C	rs11688905	G	C	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	150185231	150185232	chr2:150185232:T:G	rs1031213	T	G	G	Msx3.mouse_homeodomain_1	2	1	-	9.322775196612062	6.940187755141338	ACAATTAACAGATAATTT
chr2	150571580	150571581	chr2:150571581:A:G	rs146802107	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	150691041	150691042	chr2:150691042:A:T	rs185547963	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	8.457285654024055	4.27487719118409	TTAATCCAACAGCAATTA
chr2	150980448	150980449	chr2:150980449:C:G	rs6433101	C	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	151113464	151113465	chr2:151113465:T:C	rs1485117	T	C	C	Msx3.mouse_homeodomain_1	0	1	+	9.335754729083995	10.159345473344171	TTTATTATATGCTAATTA
chr2	151290143	151290144	chr2:151290144:T:C	rs2278090	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.950745519703486	3.9813145433346078	ACAATGACTAAGAAATTA
chr2	151290157	151290158	chr2:151290158:G:T	rs2278089	G	T	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr2	151706440	151706441	chr2:151706441:A:G	rs11692567	A	G	a	Msx3.mouse_homeodomain_1	9	1	+	8.748404543624215	7.807860551238069	TTAATAATTACACAATTA
chr2	151708962	151708963	chr2:151708963:T:C	rs13384856	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.000370842198798	3.412276623175649	TCACTTAGAAGGCTATTA
chr2	151727638	151727639	chr2:151727639:A:C	rs4664499	A	C	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	152039004	152039005	chr2:152039005:T:G	rs12465272	T	G	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	152046443	152046444	chr2:152046444:G:C	rs2680981	G	C	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	152716385	152716386	chr2:152716386:A:G	rs79075002	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	152716428	152716429	chr2:152716429:G:A	rs17400736	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr2	153605285	153605286	chr2:153605286:T:C	rs4594396	T	C	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	154374544	154374545	chr2:154374545:T:C	rs2037663	T	C	t	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	154482195	154482196	chr2:154482196:G:A	rs6745664	G	A	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr2	155022545	155022546	chr2:155022546:A:T	rs17643450	A	T	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr2	155116068	155116069	chr2:155116069:C:T	rs112072633	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	155145729	155145730	chr2:155145730:T:C	rs34578247	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	155609234	155609235	chr2:155609235:C:A	rs80153284	C	A	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr2	156207804	156207805	chr2:156207805:T:A	rs1519799	T	A	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr2	156425563	156425564	chr2:156425564:A:G	rs298289	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	156841425	156841426	chr2:156841426:T:C	rs56755886	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	157264121	157264122	chr2:157264122:T:C	rs7598086	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	157761685	157761686	chr2:157761686:T:C	rs79561112	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	157761686	157761687	chr2:157761687:T:C	rs78582919	T	C	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr2	157866386	157866387	chr2:157866387:C:T	rs12475589	C	T	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr2	157911961	157911962	chr2:157911962:A:G	rs75901788	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr2	157962284	157962285	chr2:157962285:A:G	rs11686202	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr2	158586424	158586425	chr2:158586425:T:G	rs719931	T	G	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	158658608	158658609	chr2:158658609:A:T	rs58540852	A	T	A	Msx3.mouse_homeodomain_1	16	1	-	12.386655649251114	8.501817721728056	GCAATCAGAATGCGATTA
chr2	158686134	158686135	chr2:158686135:A:G	rs13431834	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	158686176	158686177	chr2:158686177:C:T	rs4664990	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	158714422	158714423	chr2:158714423:A:G	rs2528620	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	158917574	158917575	chr2:158917575:C:T	rs72948193	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	159209959	159209960	chr2:159209960:A:G	rs74659229	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr2	159312235	159312236	chr2:159312236:T:C	rs73967808	T	C	A	Msx3.mouse_homeodomain_1	3	1	-	7.249555575660341	3.2801245992914634	GACATTAGTAGGCCATTA
chr2	159415787	159415788	chr2:159415788:T:G	rs4665068	T	G	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr2	159550378	159550379	chr2:159550379:C:A	rs7585513	C	A	C	Msx3.mouse_homeodomain_1	11	1	+	10.06125449269275	8.778837926807078	CCACTCACAGTCCAATTA
chr2	159572075	159572076	chr2:159572076:C:T	rs11693108	C	T	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr2	159611722	159611723	chr2:159611723:C:T	rs76202233	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr2	159736377	159736378	chr2:159736378:C:T	rs77363656	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	159859996	159859997	chr2:159859997:T:C	rs10929957	T	C	t	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	160210553	160210554	chr2:160210554:G:T	rs75093434	G	T	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr2	160974975	160974976	chr2:160974976:T:C	rs79340150	T	C	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr2	161017541	161017542	chr2:161017542:G:T	rs925798	G	T	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr2	161064075	161064076	chr2:161064076:C:A	rs6746443	C	A	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr2	161279145	161279146	chr2:161279146:A:T	rs796572486	A	T	A	Msx3.mouse_homeodomain_1	4	1	-	10.528484000240027	3.6234624545039438	CTAATTAAAATATACTTA
chr2	161358582	161358583	chr2:161358583:C:G	rs1559496	C	G	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	161946201	161946202	chr2:161946202:A:T	rs75998758	A	T	A	Msx3.mouse_homeodomain_1	4	1	-	9.839825468354498	2.934803922618418	AAAGTTAAATTCCAATTA
chr2	162436457	162436458	chr2:162436458:G:A	rs7595126	G	A	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	163349037	163349038	chr2:163349038:G:A	rs114737771	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	163551803	163551804	chr2:163551804:A:C	rs1882347	A	C	a	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	163604436	163604437	chr2:163604437:A:G	rs7572130	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	8.621294817520631	7.511479280197036	ACAATTAAAAGTCCATCA
chr2	164794758	164794759	chr2:164794759:T:A	rs3769908	T	A	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	164843093	164843094	chr2:164843094:C:T	rs3806544	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	165295006	165295007	chr2:165295007:G:A	rs914754019	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr2	165804962	165804963	chr2:165804963:A:T	rs184532933	A	T	A	Msx3.mouse_homeodomain_1	8	1	+	9.967936862858625	8.930666389701077	TTATTTAAACAGCAATTA
chr2	165815942	165815943	chr2:165815943:T:C	rs181860237	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	166084502	166084503	chr2:166084503:C:T	rs78001108	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	166347609	166347610	chr2:166347610:T:C	rs7580299	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	10.684870608896738	8.242793381965182	TTAATTACAAAGCATTTA
chr2	167290087	167290088	chr2:167290088:G:A	rs141229148	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	167335726	167335727	chr2:167335727:T:G	rs73015882	T	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr2	167396228	167396229	chr2:167396229:G:A	rs2617383	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	167987759	167987760	chr2:167987760:A:T	rs145535988	A	T	A	Msx3.mouse_homeodomain_1	16	1	-	11.002591551717344	7.117753624194285	GAAATTAAAATCTCATTA
chr2	167989725	167989726	chr2:167989726:T:C	rs735893	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	168141890	168141891	chr2:168141891:A:G	rs3769405	A	G	G	Msx3.mouse_homeodomain_1	10	1	-	8.757659391821196	7.713687091947482	GTTATTAAGTTACAATTG
chr2	168254848	168254849	chr2:168254849:A:G	chr2:168254849:A:G	A	G	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	168358708	168358709	chr2:168358709:G:A	rs7562147	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr2	168519109	168519110	chr2:168519110:G:A	rs16855438	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	168581566	168581567	chr2:168581567:A:G	rs2084972	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	168660370	168660371	chr2:168660371:A:G	rs13391857	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr2	168678596	168678597	chr2:168678597:A:G	rs77894785	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	8.770231428513519	5.645282274919665	GCAGTAAAAGTGTAATTA
chr2	168857839	168857840	chr2:168857840:T:C	rs2632380	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	168974445	168974446	chr2:168974446:A:G	rs10200453	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.116627579958754	5.147196603589878	CCAATTAAGAGGTGATTT
chr2	168976241	168976242	chr2:168976242:C:T	rs4148785	C	T	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	168976250	168976251	chr2:168976251:G:C	rs4148784	G	C	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr2	168998596	168998597	chr2:168998597:C:T	rs3770599	C	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	169363370	169363371	chr2:169363371:A:G	rs3755166	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	8.709831060898182	6.267753833966624	ATCCTTATTTAGCAATTA
chr2	169493556	169493557	chr2:169493557:G:A	rs12465387	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	169653863	169653864	chr2:169653864:C:T	rs13011829	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	169808597	169808598	chr2:169808598:G:A	rs2556352	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	169927149	169927150	chr2:169927150:G:T	rs73015750	G	T	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr2	169927187	169927188	chr2:169927188:G:A	rs73015753	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	170014084	170014085	chr2:170014085:T:C	rs10497357	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	7.685143555190682	5.11698395800748	GCAATTTAACACCGATAA
chr2	170322435	170322436	chr2:170322436:A:T	rs766133108	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	9.201066525170557	4.874306173821003	TCCATTCAGTAGCAATTA
chr2	170408506	170408507	chr2:170408507:T:C	rs28595798	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr2	170409625	170409626	chr2:170409626:T:G	rs17579806	T	G	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	170681373	170681374	chr2:170681374:T:C	rs78552220	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	9.105286274152256	6.537126676969055	GCCATTTTAGACTAATTA
chr2	171084298	171084299	chr2:171084299:T:C	rs6732229	T	C	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	171186684	171186685	chr2:171186685:T:A	rs4668371	T	A	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	171317052	171317053	chr2:171317053:T:A	rs184215465	T	A	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	171858890	171858891	chr2:171858891:T:C	rs1105265	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	172079725	172079726	chr2:172079726:A:G	rs72877582	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	172282382	172282383	chr2:172282383:G:A	rs537904619	G	A	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	172340798	172340799	chr2:172340799:C:A	rs10930550	C	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	172591898	172591899	chr2:172591899:C:T	rs115013471	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr2	172599458	172599459	chr2:172599459:G:A	rs13388338	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr2	173045529	173045530	chr2:173045530:C:T	rs1551249	C	T	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	173045739	173045740	chr2:173045740:C:G	rs60121307	C	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	173137900	173137901	chr2:173137901:A:G	rs17760899	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	173614275	173614276	chr2:173614276:T:C	rs1465873	T	C	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr2	174024765	174024766	chr2:174024766:T:C	rs7566253	T	C	C	Msx3.mouse_homeodomain_1	17	1	-	9.167528311693083	6.59936871450988	GAAATTAAAATGCAAATA
chr2	174067228	174067229	chr2:174067229:G:A	rs2044471	G	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	174152751	174152752	chr2:174152752:T:C	rs2165212	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	174331855	174331856	chr2:174331856:A:C	rs76153571	A	C	A	Msx3.mouse_homeodomain_1	8	1	+	7.090713971342574	6.171147146710021	CTAATTGCACTCCAGTTA
chr2	174487861	174487862	chr2:174487862:T:C	rs1077071	T	C	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr2	174957950	174957951	chr2:174957951:G:C	rs536911431	G	C	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	175282661	175282662	chr2:175282662:A:T	rs77023162	A	T	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr2	175464863	175464864	chr2:175464864:T:C	rs58782509	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	7.896844838432803	7.004755806361552	ACAATTTACTATCCATTA
chr2	175620785	175620786	chr2:175620786:A:G	rs11676525	A	G	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	175811435	175811436	chr2:175811436:A:G	rs4619574	A	G	G	Msx3.mouse_homeodomain_1	5	1	-	7.66333352046849	5.270347777957991	GTCATTGTCAAGCAATCA
chr2	175840800	175840801	chr2:175840801:T:C	rs10221600	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr2	176164357	176164358	chr2:176164358:C:T	rs2857541	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr2	176206760	176206761	chr2:176206761:A:G	rs530515510	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	176704641	176704642	chr2:176704642:T:C	rs4411740	T	C	C	Msx3.mouse_homeodomain_1	12	1	+	9.436886399364319	10.882009062930802	CATATTAAGTACTAATTA
chr2	176710190	176710191	chr2:176710191:C:G	rs78242836	C	G	C	Msx3.mouse_homeodomain_1	0	1	+	9.754344054651945	10.121695564526554	CTTATTACATAGAAATTA
chr2	177015917	177015918	chr2:177015918:G:A	rs72933508	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr2	177030539	177030540	chr2:177030540:C:G	rs13012236	C	G	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	177077177	177077178	chr2:177077178:C:T	rs2056776	C	T	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr2	177275158	177275159	chr2:177275159:T:C	rs2364727	T	C	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	177283519	177283520	chr2:177283520:C:G	rs116660829	C	G	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr2	177283559	177283560	chr2:177283560:C:G	rs7568033	C	G	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	177467927	177467928	chr2:177467928:G:A	rs11891003	G	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr2	177675469	177675470	chr2:177675470:C:T	rs199572049	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	177952313	177952314	chr2:177952314:T:C	rs17401902	T	C	C	Msx3.mouse_homeodomain_1	8	1	-	11.912911996154293	10.906362663309086	GAAATCAAAGTGCAATTA
chr2	178431938	178431939	chr2:178431939:T:C	rs3997877	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	179251238	179251239	chr2:179251239:T:C	rs10194534	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.875376640261605	4.905945663892728	GCCATTATTCTCCAATTT
chr2	179543457	179543458	chr2:179543458:A:G	rs73976404	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr2	179551529	179551530	chr2:179551530:T:C	rs114811715	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	179655930	179655931	chr2:179655931:T:C	rs3106689	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	179702828	179702829	chr2:179702829:A:T	rs12471882	A	T	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr2	179800960	179800961	chr2:179800961:A:G	rs6735731	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	180086624	180086625	chr2:180086625:G:A	rs77658808	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr2	180212935	180212936	chr2:180212936:G:A	rs6757053	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.693664539351175	8.585154984186431	GTAATCAATCCTCAATTA
chr2	180352964	180352965	chr2:180352965:A:G	rs146836463	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	8.962738389893143	7.956189057047937	GCACTTAGAATCAAATTG
chr2	180412660	180412661	chr2:180412661:C:A	rs139173562	C	A	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr2	181300690	181300691	chr2:181300691:T:C	rs17365327	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr2	181396426	181396427	chr2:181396427:C:T	rs12693276	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr2	181687086	181687087	chr2:181687087:T:A	rs16867468	T	A	t	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	181773418	181773419	chr2:181773419:T:C	rs11901603	T	C	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr2	181780980	181780981	chr2:181780981:G:A	rs77737127	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	181811606	181811607	chr2:181811607:G:A	rs10201303	G	A	G	Msx3.mouse_homeodomain_1	9	1	-	7.377763288886849	8.269852320958098	TCACTTGCACTCTAATTA
chr2	182366772	182366773	chr2:182366773:G:A	rs71427842	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	182427279	182427280	chr2:182427280:C:T	rs115213426	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr2	182463728	182463729	chr2:182463729:A:T	rs11675519	A	T	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	182499995	182499996	chr2:182499996:T:C	rs35361731	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	9.936699492010419	9.044610459939172	ACAATACAATACCAATTA
chr2	182900460	182900461	chr2:182900461:A:C	rs762948332	A	C	a	Msx3.mouse_homeodomain_1	17	1	+	6.441131203094023	1.8542746219675146	GCACTTGGAATGCAATGA
chr2	183475656	183475657	chr2:183475657:G:A	rs6750012	G	A	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	183495903	183495904	chr2:183495904:G:A	rs12474003	G	A	A	Msx3.mouse_homeodomain_1	0	1	+	7.420807662748056	6.312298107583312	GCAATAGAAGTACAATCA
chr2	183805443	183805444	chr2:183805444:G:A	rs2887367	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	184154364	184154365	chr2:184154365:A:G	rs13025532	A	G	A	Msx3.mouse_homeodomain_1	14	1	-	10.34072479853435	11.106506111629717	GTGATTAAAATCCATTTA
chr2	184209804	184209805	chr2:184209805:G:A	rs17731968	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	10.935268870645384	9.738317845469972	GTAATTACAGAGCATTTA
chr2	184270970	184270971	chr2:184270971:C:T	rs114052424	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	184567023	184567024	chr2:184567024:T:A	rs10803978	T	A	A	Msx3.mouse_homeodomain_1	4	1	+	9.977356506095369	3.072334960359286	TCAATTAAGATGTATTTA
chr2	184799851	184799852	chr2:184799852:T:A	rs4294964	T	A	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	185608701	185608702	chr2:185608702:A:G	rs35289321	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	186589547	186589548	chr2:186589548:G:A	rs61763601	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr2	186691207	186691208	chr2:186691208:G:A	rs72905169	G	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	187213276	187213277	chr2:187213277:G:A	rs115724955	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr2	187303622	187303623	chr2:187303623:A:G	rs840576	A	G	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr2	187553726	187553727	chr2:187553727:T:A	rs10201169	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	7.673847244690417	1.5949338253325598	CCATTTAGATTACGATTA
chr2	189411811	189411812	chr2:189411812:T:C	rs140415580	T	C	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr2	189412868	189412869	chr2:189412869:C:T	rs62184653	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.293342815425296	9.36993398636177	CCAATTATATGATAATTC
chr2	189504408	189504409	chr2:189504409:C:T	rs114725041	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr2	189567740	189567741	chr2:189567741:T:C	rs994227	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	190367260	190367261	chr2:190367261:A:G	rs6730620	A	G	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr2	190440820	190440821	chr2:190440821:A:G	rs58433478	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	190482583	190482584	chr2:190482584:G:T	rs12613365	G	T	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr2	190530833	190530834	chr2:190530834:C:T	rs74504670	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	190606881	190606882	chr2:190606882:C:T	rs10931464	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	190834319	190834320	chr2:190834320:T:C	rs16832990	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	190863623	190863624	chr2:190863624:C:T	rs16833013	C	T	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr2	191703185	191703186	chr2:191703186:G:T	rs12464838	G	T	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	191703204	191703205	chr2:191703205:T:A	rs12469001	T	A	A	Msx3.mouse_homeodomain_1	3	1	-	11.966786219969755	6.839435879821662	ACAATTACATAGCACTTA
chr2	192124962	192124963	chr2:192124963:T:G	rs17367154	T	G	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	192470381	192470382	chr2:192470382:C:G	rs6742331	C	G	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr2	192559873	192559874	chr2:192559874:G:A	rs10931558	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	7.471937020831617	8.54852819176809	CTCATTATACGCTAATTG
chr2	192585611	192585612	chr2:192585612:A:G	rs185756308	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	192586115	192586116	chr2:192586116:T:C	rs6434566	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.722498169706143	0.8150329327821386	TCACTTTATGGGCAATTA
chr2	192887525	192887526	chr2:192887526:G:A	rs114201089	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr2	193512803	193512804	chr2:193512804:G:A	rs1440059	G	A	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	193781070	193781071	chr2:193781071:C:G	rs73981854	C	G	C	Msx3.mouse_homeodomain_1	11	1	-	6.779144214505526	6.864609755215789	GCCATTAATTGGCTATTG
chr2	194253800	194253801	chr2:194253801:T:C	rs62196189	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr2	194920818	194920819	chr2:194920819:C:T	rs4850566	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	195307910	195307911	chr2:195307911:C:T	rs777291	C	T	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	195813665	195813666	chr2:195813666:C:T	rs62201499	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	196138093	196138094	chr2:196138094:C:T	rs4850665	C	T	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr2	196148475	196148476	chr2:196148476:C:A	rs7606878	C	A	C	Msx3.mouse_homeodomain_1	11	1	+	7.600098977949268	6.317682412063596	GCAATCATAAGCAAATAA
chr2	196168008	196168009	chr2:196168009:T:A	rs191697452	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	11.49465092030081	7.9023687131882925	CTAATCAATGACTAATTA
chr2	196175814	196175815	chr2:196175815:A:G	rs55774725	A	G	A	Msx3.mouse_homeodomain_1	6	1	-	8.406686866044087	7.753953266684445	GAAATTTAGACACAATTA
chr2	196274371	196274372	chr2:196274372:T:C	rs73044212	T	C	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr2	196331106	196331107	chr2:196331107:A:C	rs13405871	A	C	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr2	196331107	196331108	chr2:196331108:A:G	rs34487428	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	197159610	197159611	chr2:197159611:T:C	rs1881399	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	8.629840272907096	7.5532491019706205	ACACTCACATATCAATTA
chr2	197159893	197159894	chr2:197159894:C:A	rs73991225	C	A	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	197159901	197159902	chr2:197159902:G:T	rs2712880	G	T	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	197871799	197871800	chr2:197871800:G:T	rs1028616966	G	T	G	Msx3.mouse_homeodomain_1	10	1	-	9.86096928827681	11.398513112125645	GCAATCAAAGCAAAATTA
chr2	198644664	198644665	chr2:198644665:T:C	rs17814767	T	C	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	199336847	199336848	chr2:199336848:C:T	rs1374356	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr2	199336881	199336882	chr2:199336882:A:G	rs1374357	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	199458242	199458243	chr2:199458243:C:G	rs868307916	C	G	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr2	199792774	199792775	chr2:199792775:T:G	rs80300166	T	G	T	Msx3.mouse_homeodomain_1	9	1	-	11.53189718510832	10.225666881163988	GTCATTAGAAAGCAATTG
chr2	200076873	200076874	chr2:200076874:G:A	rs3115423	G	A	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr2	200221526	200221527	chr2:200221527:T:C	rs59183774	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	200479048	200479049	chr2:200479049:T:C	rs150174922	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	200625112	200625113	chr2:200625113:C:T	rs6720189	C	T	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	200716034	200716035	chr2:200716035:T:C	chr2:200716035:T:C	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	200863049	200863050	chr2:200863050:C:T	rs12478395	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr2	201261891	201261892	chr2:201261892:A:G	rs1861270	A	G	G	Msx3.mouse_homeodomain_1	12	1	-	8.007955165957991	9.453077829524474	ACAATTAAACTGTAAATA
chr2	201769324	201769325	chr2:201769325:A:G	rs7569542	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr2	201769334	201769335	chr2:201769335:A:T	rs150213250	A	T	A	Msx3.mouse_homeodomain_1	6	1	+	10.858594124077747	7.266311916965226	AGACTTAAATACCAATTA
chr2	201932720	201932721	chr2:201932721:G:A	rs75110883	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	201939777	201939778	chr2:201939778:C:T	rs146220709	C	T	C	Msx3.mouse_homeodomain_1	2	1	-	7.903400363599476	10.420268991536556	CCGCTTGCAGAGCAATTA
chr2	202047646	202047647	chr2:202047647:G:T	rs16838672	G	T	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr2	202721631	202721632	chr2:202721632:G:T	rs772675255	G	T	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	202773459	202773460	chr2:202773460:A:G	rs7598328	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.311502709316855	3.7234084902937044	GTCATCACATGTCAATTA
chr2	203032055	203032056	chr2:203032056:A:C	rs144163660	A	C	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	203240998	203240999	chr2:203240999:G:T	rs368588310	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	7.705786497371771	6.0810216190983235	GTAATTAGGAGGATATTA
chr2	203534611	203534612	chr2:203534612:T:G	rs2469961	T	G	g	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	203562616	203562617	chr2:203562617:A:G	rs10174652	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	204090506	204090507	chr2:204090507:G:T	rs12623615	G	T	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	204108290	204108291	chr2:204108291:A:G	rs139260751	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.192400370415736	4.604306151392588	ATTATTATTTATCAATTA
chr2	204550983	204550984	chr2:204550984:C:T	rs112605852	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	204934003	204934004	chr2:204934004:T:C	rs10200380	T	C	C	Msx3.mouse_homeodomain_1	5	1	-	7.55050338962806	5.929323659317277	GGAATAAGGTGACAATTA
chr2	205197824	205197825	chr2:205197825:T:C	rs1921788	T	C	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	205568600	205568601	chr2:205568601:G:A	rs17639139	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	205589669	205589670	chr2:205589670:T:C	rs12615013	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	206804573	206804574	chr2:206804574:G:A	rs10207817	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr2	206888073	206888074	chr2:206888074:G:A	rs73057482	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	206888096	206888097	chr2:206888097:T:C	rs12469619	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.520140344726287	0.6126751078022821	TTACTTAGGAAGCAATAA
chr2	207031469	207031470	chr2:207031470:T:C	rs114752262	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	12.81778071832888	11.773808418455165	GCAATTAAGTTAAAATTA
chr2	207067140	207067141	chr2:207067141:T:C	rs17281469	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr2	207095205	207095206	chr2:207095206:T:A	rs140207131	T	A	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr2	207274525	207274526	chr2:207274526:A:G	rs183654344	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	207297004	207297005	chr2:207297005:T:C	rs11674656	T	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	207365757	207365758	chr2:207365758:C:T	rs72951700	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	9.455454102842559	9.785395055558656	TCAATAACAGAATAATTA
chr2	207667283	207667284	chr2:207667284:C:T	rs13417554	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	207702964	207702965	chr2:207702965:T:C	rs13401308	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	10.870734640148054	8.353866012210975	ACATTTAACTAGCAATTA
chr2	207970353	207970354	chr2:207970354:A:G	rs13423906	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	208040747	208040748	chr2:208040748:A:G	rs146591837	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.093962004900451	5.124531028531573	GCAATTGTCCTGCAATCA
chr2	208050087	208050088	chr2:208050088:C:T	rs2362789	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr2	208266913	208266914	chr2:208266914:T:G	rs73983727	T	G	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	208266920	208266921	chr2:208266921:T:C	rs2885785	T	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr2	209432479	209432480	chr2:209432480:G:A	rs35216876	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	209640357	209640358	chr2:209640358:A:C	rs1396778	A	C	A	Msx3.mouse_homeodomain_1	7	1	+	10.720288411691012	9.330401864986253	ACAGTTAAAAAATAATTA
chr2	210172574	210172575	chr2:210172575:T:A	rs997689106	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	13.591733597309503	9.999451390196985	GCAATTATTCAGTAATTA
chr2	210470874	210470875	chr2:210470875:A:C	rs3856342	A	C	A	Msx3.mouse_homeodomain_1	9	1	+	9.04293170217392	7.736701398229589	CTCCTTAAAATCAAATTA
chr2	210708666	210708667	chr2:210708667:G:T	rs2216403	G	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr2	210818262	210818263	chr2:210818263:G:T	rs12464940	G	T	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	211329496	211329497	chr2:211329497:T:C	rs12694232	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr2	211742197	211742198	chr2:211742198:T:C	rs75404170	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr2	212647490	212647491	chr2:212647491:G:A	rs11678993	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr2	212930976	212930977	chr2:212930977:C:T	rs10176618	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr2	213280110	213280111	chr2:213280111:C:G	rs185256170	C	G	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	213338922	213338923	chr2:213338923:G:A	rs72937070	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr2	213868547	213868548	chr2:213868548:C:G	rs12466276	C	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr2	214096503	214096504	chr2:214096504:G:A	rs3213780	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr2	214096556	214096557	chr2:214096557:G:A	rs3213781	G	A	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	214588251	214588252	chr2:214588252:A:G	rs4672715	A	G	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr2	214888667	214888668	chr2:214888668:T:G	rs10182158	T	G	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	215002422	215002423	chr2:215002423:A:G	rs145089991	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr2	215037049	215037050	chr2:215037050:C:T	rs17501837	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr2	215345436	215345437	chr2:215345437:C:T	rs957480	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr2	215402012	215402013	chr2:215402013:A:G	rs6744921	A	G	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	215519615	215519616	chr2:215519616:C:G	rs1561298	C	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	215914301	215914302	chr2:215914302:G:T	rs11893142	G	T	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	215922214	215922215	chr2:215922215:T:C	rs10932634	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	9.31770411705983	3.2191584371906976	TCCATTATTGAGAAATTA
chr2	216090735	216090736	chr2:216090736:C:T	rs828921	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr2	216318492	216318493	chr2:216318493:T:A	rs72944633	T	A	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr2	216865764	216865765	chr2:216865765:G:A	rs966057	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	217225885	217225886	chr2:217225886:C:T	rs2553038	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	217951978	217951979	chr2:217951979:C:T	rs10177639	C	T	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr2	218040671	218040672	chr2:218040672:A:G	rs10178423	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr2	218310934	218310935	chr2:218310935:T:A	rs111494465	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	7.86292371153126	3.536163360181705	GCAATTACAACACAATAG
chr2	219769786	219769787	chr2:219769787:C:T	rs1035680	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	6.960584842163973	6.1127419712832864	GCAATTTCCAGCCAATTC
chr2	219772456	219772457	chr2:219772457:C:T	rs1011492434	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr2	220100563	220100564	chr2:220100564:A:C	rs4407239	A	C	c	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr2	220201565	220201566	chr2:220201566:C:T	rs192360488	C	T	T	Msx3.mouse_homeodomain_1	7	1	+	9.077256258237167	9.407197210953264	ACCATTACGAACCACTTA
chr2	220334470	220334471	chr2:220334471:A:G	rs139265445	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	8.206459471667578	5.689590843730502	CCAATGACTCTACAATTA
chr2	220347227	220347228	chr2:220347228:G:A	rs6747324	G	A	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	221265998	221265999	chr2:221265999:C:T	rs1002826	C	T	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	221310099	221310100	chr2:221310100:C:T	rs1821178	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	221334983	221334984	chr2:221334984:A:G	rs2014164	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	7.974291273478925	7.03374728109278	TCATTTAGCATTCAATTA
chr2	221448163	221448164	chr2:221448164:C:A	rs13411252	C	A	C	Msx3.mouse_homeodomain_1	8	1	-	9.267169685327623	9.236448545015278	GTCATGAAGATGCAATTA
chr2	221452652	221452653	chr2:221452653:A:C	rs3821029	A	C	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr2	221501734	221501735	chr2:221501735:G:A	rs62180589	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr2	221501770	221501771	chr2:221501771:C:T	rs149612976	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	222053471	222053472	chr2:222053472:G:A	rs348971	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	222241298	222241299	chr2:222241299:G:T	rs1367413	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	7.406921659043651	4.706632282103185	GCGATAAGAGGGCAATTG
chr2	222652985	222652986	chr2:222652986:C:G	rs10170846	C	G	g	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	222689011	222689012	chr2:222689012:G:A	rs34666618	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr2	223162236	223162237	chr2:223162237:G:A	rs1868295	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.381603917950915	7.936481254384433	CCCATTAAACTTCCATTA
chr2	223221727	223221728	chr2:223221728:G:A	rs1607246	G	A	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	223297053	223297054	chr2:223297054:G:A	rs12474983	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr2	223306495	223306496	chr2:223306496:G:A	rs147286900	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	6.963727596759752	7.293668549475849	GGCATTGCGAGCCAATTA
chr2	223306502	223306503	chr2:223306503:C:T	rs186449789	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	6.963727596759752	5.855218041595006	GGCATTGCGAGCCAATTA
chr2	223588336	223588337	chr2:223588337:G:A	rs79133249	G	A	G	Msx3.mouse_homeodomain_1	6	1	+	7.2532677271878585	9.695344954119417	ACACTTGCAGACAAATTA
chr2	223776851	223776852	chr2:223776852:C:T	rs10498154	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	223937421	223937422	chr2:223937422:G:C	rs9288585	G	C	G	Msx3.mouse_homeodomain_1	11	1	+	8.359348010030288	8.444813550740548	GCAATTAAATGGAAAATA
chr2	224086084	224086085	chr2:224086085:A:G	rs112968943	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	224086124	224086125	chr2:224086125:T:C	rs16865557	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr2	224133556	224133557	chr2:224133557:C:T	rs10169530	C	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr2	224455112	224455113	chr2:224455113:A:T	rs10180298	A	T	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr2	224484781	224484782	chr2:224484782:T:C	rs12990758	T	C	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr2	224983672	224983673	chr2:224983673:T:A	rs412120	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	9.488092104965919	5.8958098978533995	CAGATTACTGAGCAATTA
chr2	225114254	225114255	chr2:225114255:C:T	rs1992947	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr2	225227065	225227066	chr2:225227066:G:T	rs17481193	G	T	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr2	225766771	225766772	chr2:225766772:T:C	rs13019714	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	7.589079181363995	6.5124880104275205	GCAATCAAATACAGCTTA
chr2	226124439	226124440	chr2:226124440:A:C	rs1522804	A	C	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr2	226415152	226415153	chr2:226415153:C:T	rs7582958	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr2	226802140	226802141	chr2:226802141:A:G	rs6725330	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr2	226819121	226819122	chr2:226819122:C:A	rs72965954	C	A	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr2	226913728	226913729	chr2:226913729:C:T	rs720501	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr2	227199262	227199263	chr2:227199263:G:A	rs10207952	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr2	227238750	227238751	chr2:227238751:C:T	rs12622213	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	227376971	227376972	chr2:227376972:C:T	rs554506350	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr2	227393980	227393981	chr2:227393981:A:G	rs6734145	A	G	G	Msx3.mouse_homeodomain_1	3	1	+	9.418838890882569	5.449407914513691	AAAATTAAAAGTAAATTA
chr2	227399944	227399945	chr2:227399945:C:G	rs13029710	C	G	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	227421230	227421231	chr2:227421231:G:A	rs62189413	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	7.226450852597206	7.556391805313303	TCAATCACGGTCCAATAA
chr2	227606742	227606743	chr2:227606743:A:G	rs11893257	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	10.653340269423612	6.065246050400462	CCAATCAGAGTCCAATTG
chr2	227606743	227606744	chr2:227606744:T:C	rs11888326	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	10.653340269423612	3.7458750324996073	CCAATCAGAGTCCAATTG
chr2	227653335	227653336	chr2:227653336:A:C	rs35961590	A	C	A	Msx3.mouse_homeodomain_1	0	1	-	8.356010667604675	9.546952921739468	TTGATTAAAGAGCAGTTA
chr2	227725019	227725020	chr2:227725020:T:C	rs4973238	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	9.153099507752387	8.043283970428792	ATATTTAAGAAACAATTA
chr2	227761302	227761303	chr2:227761303:A:G	rs2048051	A	G	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	227762088	227762089	chr2:227762089:A:C	rs182284781	A	C	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr2	227762251	227762252	chr2:227762252:C:T	rs141440881	C	T	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	227762264	227762265	chr2:227762265:T:A	rs114070567	T	A	A	Msx3.mouse_homeodomain_1	14	1	-	12.259515792550253	7.932755441200697	GCAATAAAGTTGTAATTA
chr2	227762290	227762291	chr2:227762291:A:G	rs145208856	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	228576329	228576330	chr2:228576330:C:T	rs141523579	C	T	c	Msx3.mouse_homeodomain_1	12	1	+	7.260237890299774	5.815115226733293	GTCATTAAGTGGCCATTG
chr2	229136660	229136661	chr2:229136661:C:T	rs1362251	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr2	229463595	229463596	chr2:229463596:C:T	rs35834872	C	T	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr2	229463619	229463620	chr2:229463620:T:C	rs34433763	T	C	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr2	229478387	229478388	chr2:229478388:A:G	rs12464136	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.4557266850372725	3.486295708668394	TCAATTACCTGCCAAATA
chr2	229852945	229852946	chr2:229852946:G:T	rs10933311	G	T	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr2	229869364	229869365	chr2:229869365:C:T	rs475525	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr2	230205085	230205086	chr2:230205086:T:A	chr2:230205086:T:A	T	A	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr2	230319058	230319059	chr2:230319059:C:G	rs11679076	C	G	c	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr2	230412610	230412611	chr2:230412611:A:C	chr2:230412611:A:C	A	C	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	230671518	230671519	chr2:230671519:T:C	rs73995114	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr2	230860692	230860693	chr2:230860693:A:C	rs2438304	A	C	A	Msx3.mouse_homeodomain_1	17	1	-	10.513413780262807	11.316040378958402	GTAATTAAAAAAAAATTT
chr2	231223675	231223676	chr2:231223676:A:C	rs17586666	A	C	A	Msx3.mouse_homeodomain_1	11	1	-	8.082720691928454	9.707485570201904	CAAATAAAACCTCAATTA
chr2	231223696	231223697	chr2:231223697:C:T	rs2551896	C	T	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr2	232696630	232696631	chr2:232696631:T:G	chr2:232696631:T:G	T	G	T	Msx3.mouse_homeodomain_1	9	1	+	8.670304233475308	8.143901512962243	CCAATTAAATTTGAATTT
chr2	232781794	232781795	chr2:232781795:A:G	rs283484	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.756912385958213	4.787481409589336	ACCATTAAGAATCACTTA
chr2	232835862	232835863	chr2:232835863:A:G	rs73997559	A	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr2	232853163	232853164	chr2:232853164:A:G	rs189544755	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr2	233152983	233152984	chr2:233152984:T:C	rs36149367	T	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	233982630	233982631	chr2:233982631:C:G	rs4233637	C	G	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	234424696	234424697	chr2:234424697:G:T	rs138256089	G	T	g	Msx3.mouse_homeodomain_1	11	1	+	7.915462771296874	6.290697893023428	ACAAATAAAAAGAAATTA
chr2	234604556	234604557	chr2:234604557:A:G	rs76346222	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr2	234604573	234604574	chr2:234604574:A:C	rs6730346	A	C	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	234604598	234604599	chr2:234604599:A:G	rs72981687	A	G	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr2	234692566	234692567	chr2:234692567:C:G	rs4663477	C	G	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr2	235196216	235196217	chr2:235196217:C:G	rs6724006	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr2	235605790	235605791	chr2:235605791:C:T	rs13422926	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr2	235706967	235706968	chr2:235706968:C:A	rs1040181	C	A	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr2	235904296	235904297	chr2:235904297:A:G	rs61623133	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.5442051395262455	2.956110920503095	ACAGTTACCGAGCAATTG
chr2	235980305	235980306	chr2:235980306:G:A	rs114903781	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	236036156	236036157	chr2:236036157:G:A	rs2123509	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	236237346	236237347	chr2:236237347:G:C	rs182482787	G	C	-	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	236398689	236398690	chr2:236398690:T:C	rs114778026	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	236639596	236639597	chr2:236639597:T:C	rs55848655	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr2	236715820	236715821	chr2:236715821:C:T	rs138864222	C	T	c	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	236715848	236715849	chr2:236715849:C:G	rs147526974	C	G	C	Msx3.mouse_homeodomain_1	1	1	-	7.553890337674988	10.818239194703303	CGAATTGCCCAACAATTA
chr2	237235659	237235660	chr2:237235660:C:T	rs4340454	C	T	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr2	237235696	237235697	chr2:237235697:A:G	rs4555292	A	G	a	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr2	237255274	237255275	chr2:237255275:C:T	rs79616598	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr2	237305065	237305066	chr2:237305066:C:G	rs1826915	C	G	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr2	237321158	237321159	chr2:237321159:C:T	rs11690424	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr2	237452322	237452323	chr2:237452323:T:C	rs6431540	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	7.720576972177356	0.8131117352533503	TCACTTAGTGAGCACTTA
chr2	237662907	237662908	chr2:237662908:C:T	rs903374	C	T	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr2	237662943	237662944	chr2:237662944:T:C	rs903373	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr2	237984719	237984720	chr2:237984720:T:C	rs921095	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	238558137	238558138	chr2:238558138:A:G	rs57539738	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	7.970715110367691	6.894123939431217	TTCATTATACATCGATTA
chr2	238907561	238907562	chr2:238907562:C:T	rs942700427	C	T	c	Msx3.mouse_homeodomain_1	0	1	-	5.99493733746199	4.886427782297247	GCACTTGTGGGCCAATCA
chr2	238943439	238943440	chr2:238943440:T:C	rs4353673	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr2	239199051	239199052	chr2:239199052:A:G	rs3791581	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	7.425207570236389	6.418658237391182	CCAAATACATTGTAATTA
chr2	239222725	239222726	chr2:239222726:T:C	rs291329	T	C	t	Msx3.mouse_homeodomain_1	16	1	+	6.8171939409693865	3.6922447873755333	CCAATGCAAAAGCAATTG
chr2	239399748	239399749	chr2:239399749:G:A	rs76612908	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr2	239400098	239400099	chr2:239400099:C:T	rs72993798	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	239439482	239439483	chr2:239439483:G:A	rs75867589	G	A	A	Msx3.mouse_homeodomain_1	1	1	-	6.9978841689198745	6.150041298039188	GCAATAAGGAGGCGATTT
chr2	239793778	239793779	chr2:239793779:C:T	rs10469864	C	T	T	Msx3.mouse_homeodomain_1	8	1	-	7.830217274169036	8.836766607014244	CCAATTCAGTCCCAATCA
chr2	239906276	239906277	chr2:239906277:C:T	rs13426854	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr2	240061444	240061445	chr2:240061445:T:C	rs6437268	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.920368708082848	3.3322744890596985	GCAACTAAAATCTAATTG
chr2	240156384	240156385	chr2:240156385:G:C	rs73111290	G	C	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr2	240203655	240203656	chr2:240203656:A:G	rs12474941	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr2	240300245	240300246	chr2:240300246:G:A	rs55929825	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr2	241185128	241185129	chr2:241185129:C:T	rs28489289	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr2	241314579	241314580	chr2:241314580:C:A	rs10185319	C	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr2	241703338	241703339	chr2:241703339:A:G	rs577253015	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr2	241910037	241910038	chr2:241910038:G:A	rs77661348	G	A	.	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr2	241942763	241942764	chr2:241942764:C:T	rs6422701	C	T	.	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr2	241976005	241976006	chr2:241976006:C:T	rs6737774	C	T	.	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr2	241988596	241988597	chr2:241988597:G:A	rs58690883	G	A	.	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr2	241988626	241988627	chr2:241988627:C:T	rs58367138	C	T	.	Msx3.mouse_homeodomain_1	12	1	+	6.845860352602254	5.400737689035773	GCATTTAACCACCATTTA
chr20	309771	309772	chr20:309772:A:G	rs187134868	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr20	366520	366521	chr20:366521:C:T	rs58365829	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr20	421526	421527	chr20:421527:T:C	rs6051900	T	C	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr20	433168	433169	chr20:433169:A:G	rs6037635	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	7.4343088943360565	0.5268436574120507	CCAATCAACAAACACTTG
chr20	463153	463154	chr20:463154:A:G	rs205898	A	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr20	558478	558479	chr20:558479:G:C	rs511353	G	C	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr20	637805	637806	chr20:637806:T:C	rs75436417	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	5.931568748304378	-0.9758964886196277	GAGATCACAGAGCAATTG
chr20	1122765	1122766	chr20:1122766:G:A	chr20:1122766:G:A	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr20	1279268	1279269	chr20:1279269:G:T	rs936657107	G	T	G	Msx3.mouse_homeodomain_1	7	1	-	8.45582683365139	9.845713380356145	ACCATTACGAACCTATTA
chr20	1382389	1382390	chr20:1382390:G:C	rs7274574	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr20	1649259	1649260	chr20:1649260:C:T	rs6079967	C	T	T	Msx3.mouse_homeodomain_1	0	1	-	8.016981295091945	6.9084717399272	GGAATTAATCTACAATCA
chr20	1655358	1655359	chr20:1655359:A:G	rs73082603	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr20	1656885	1656886	chr20:1656886:T:C	rs73082612	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	9.096242363024011	6.654165136092453	CAAATTAAAAAAAAATTG
chr20	1806079	1806080	chr20:1806080:T:G	rs127903	T	G	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr20	1964366	1964367	chr20:1964367:G:A	rs6045694	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr20	2103653	2103654	chr20:2103654:G:A	chr20:2103654:G:A	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr20	2104362	2104363	chr20:2104363:G:C	rs6081962	G	C	G	Msx3.mouse_homeodomain_1	8	1	-	8.005177714718592	7.9181952065059376	GTTATTACCTAAAAATTA
chr20	2201979	2201980	chr20:2201980:T:C	rs13043023	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr20	2421501	2421502	chr20:2421502:G:A	rs11700354	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	7.383305685810371	6.5354628149296845	ACTATTACACACCTATTA
chr20	2421518	2421519	chr20:2421519:A:C	rs75111597	A	C	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr20	2610948	2610949	chr20:2610949:C:A	rs7262746	C	A	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr20	2649334	2649335	chr20:2649335:C:T	rs6050887	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	9.17711339205831	10.069202424129557	CCAATAATACAAAAATTA
chr20	2746222	2746223	chr20:2746223:C:T	rs58941062	C	T	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr20	2794451	2794452	chr20:2794452:G:A	rs73584035	G	A	G	Msx3.mouse_homeodomain_1	2	1	+	8.853495553046827	11.370364180983906	ACGATCAGGACCCAATTA
chr20	3221482	3221483	chr20:3221483:T:C	rs6139035	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	7.678247316618884	4.5532981630250315	GTACTTAGCTTCCTATTA
chr20	3344772	3344773	chr20:3344773:T:C	rs976041	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr20	3934741	3934742	chr20:3934742:G:C	rs75609382	G	C	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr20	3934864	3934865	chr20:3934865:T:A	rs192313704	T	A	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr20	3934896	3934897	chr20:3934897:C:G	rs142533071	C	G	C	Msx3.mouse_homeodomain_1	12	1	+	7.604328242676316	4.104945224060158	CCAATCATGAAGCCATCA
chr20	4066491	4066492	chr20:4066492:C:T	rs34444919	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.549176082465077	5.8389456634813675	CCAATAAATAACCTATTG
chr20	4066512	4066513	chr20:4066513:C:G	rs4352290	C	G	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr20	4092627	4092628	chr20:4092628:C:T	rs17290928	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr20	4408980	4408981	chr20:4408981:T:G	rs34492258	T	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr20	4613979	4613980	chr20:4613980:A:G	rs189856702	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr20	4702344	4702345	chr20:4702345:T:C	rs7264175	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	8.964837812297397	7.855022274973801	TTAATCTATTAGCAATTA
chr20	4743044	4743045	chr20:4743045:C:T	rs2025118	C	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr20	4743054	4743055	chr20:4743055:A:G	rs2025117	A	G	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr20	5069428	5069429	chr20:5069429:T:C	rs145984435	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.16726069229578	0.25979545537177495	CTAATTGTCAAGAAATCA
chr20	5088486	5088487	chr20:5088487:T:G	rs6038063	T	G	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr20	5141838	5141839	chr20:5141839:G:A	rs185770441	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	8.01411699153197	7.166274120651287	ACACTCAACAAGCAATCA
chr20	5393605	5393606	chr20:5393606:A:G	rs6076827	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr20	5447653	5447654	chr20:5447654:C:T	rs10485489	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.735819515756183	6.2906968521897015	ATAATTTGGAACCAATCA
chr20	5651955	5651956	chr20:5651956:T:C	rs2423122	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.235523351355113	4.266092374986236	GCAATTAGATACACATTT
chr20	5750030	5750031	chr20:5750031:A:T	rs6085267	A	T	T	Msx3.mouse_homeodomain_1	14	1	+	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr20	5888226	5888227	chr20:5888227:C:T	rs151230631	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr20	6485757	6485758	chr20:6485758:T:C	rs4815904	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr20	6485926	6485927	chr20:6485927:T:A	rs6085574	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	7.691473044465648	4.320686848586851	GTACTCAACAAAAAATTA
chr20	6582772	6582773	chr20:6582773:G:T	rs1321447	G	T	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr20	6590765	6590766	chr20:6590766:G:C	rs765199482	G	C	.	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr20	6709854	6709855	chr20:6709855:T:A	rs1015151	T	A	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr20	6765070	6765071	chr20:6765071:A:G	rs75989797	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr20	6780864	6780865	chr20:6780865:C:T	rs6054512	C	T	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr20	6829093	6829094	chr20:6829094:G:T	rs73895332	G	T	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr20	6966782	6966783	chr20:6966783:G:A	rs536329392	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	10.118339211023814	8.921388185848402	TAAATTATAAAGCAATTT
chr20	7477632	7477633	chr20:7477633:A:T	rs6086059	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	8.452595637538888	4.125835286189334	CCACTGACATTGCAATTA
chr20	7586224	7586225	chr20:7586225:C:T	rs6117863	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr20	8073154	8073155	chr20:8073155:T:C	rs6118050	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	9.254594475015553	6.812517248083994	TTAATTATGATGCAATTC
chr20	8271907	8271908	chr20:8271908:T:C	rs192330976	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr20	8335732	8335733	chr20:8335733:G:A	rs718986	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	7.512324053496713	6.315373028321303	GCCATTACAAGGCAAATA
chr20	8345041	8345042	chr20:8345042:C:T	rs1235145	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr20	8494362	8494363	chr20:8494363:A:G	rs6055863	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	10.586596903878483	9.64605291149234	ATAATTACCAGGAAATTA
chr20	8517515	8517516	chr20:8517516:C:T	rs6055873	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr20	8579133	8579134	chr20:8579134:A:G	rs6039201	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr20	8602766	8602767	chr20:8602767:T:G	rs2223538	T	G	G	Msx3.mouse_homeodomain_1	9	1	-	8.120953863934272	6.8147235599899405	GAAATTAAAATCCCTTTA
chr20	8621059	8621060	chr20:8621060:C:T	rs17365739	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr20	8751777	8751778	chr20:8751778:A:G	rs77812802	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.117846624487434	1.210381387563428	AGATTTAAATTCCAATTA
chr20	8851868	8851869	chr20:8851869:C:T	rs892063172	C	T	t	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr20	8853719	8853720	chr20:8853720:A:G	rs4277595	A	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr20	9302329	9302330	chr20:9302330:G:A	rs7265535	G	A	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr20	9454052	9454053	chr20:9454053:T:A	rs80188871	T	A	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr20	9830223	9830224	chr20:9830224:A:T	rs221020	A	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr20	10376188	10376189	chr20:10376189:C:T	rs6032861	C	T	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr20	10388095	10388096	chr20:10388096:C:G	rs6032871	C	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr20	10434541	10434542	chr20:10434542:C:A	rs1268127823	C	A	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr20	10434542	10434543	chr20:10434543:G:A	rs16991579	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr20	10659274	10659275	chr20:10659275:A:G	rs3790159	A	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr20	10903201	10903202	chr20:10903202:C:T	rs142342087	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr20	11129004	11129005	chr20:11129005:T:G	rs8125616	T	G	T	Msx3.mouse_homeodomain_1	16	1	+	8.173542959502802	3.1000101833934735	TTCATTATGATCCAATTT
chr20	11168269	11168270	chr20:11168270:G:A	rs2327340	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr20	11242755	11242756	chr20:11242756:G:C	rs6040460	G	C	g	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr20	11352130	11352131	chr20:11352131:G:A	rs6108924	G	A	G	Msx3.mouse_homeodomain_1	7	1	+	7.938785972591099	9.048601509914693	GCCATTAGGCAAGAATTA
chr20	11648681	11648682	chr20:11648682:C:T	rs35112335	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr20	11777874	11777875	chr20:11777875:T:C	rs114507656	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr20	11873729	11873730	chr20:11873730:A:G	rs2144352	A	G	G	Msx3.mouse_homeodomain_1	0	1	-	8.030241177375085	8.853831921635269	TTAATTAACAAGCATTCA
chr20	12514500	12514501	chr20:12514501:T:C	rs2224107	T	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr20	12514542	12514543	chr20:12514543:C:G	rs2224108	C	G	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr20	12963088	12963089	chr20:12963089:G:A	rs3843765	G	A	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr20	12996660	12996661	chr20:12996661:A:G	rs6109646	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.808689930209167	2.220595711186016	CCAATCGCTTGGAAATTA
chr20	13305538	13305539	chr20:13305539:G:A	rs73082240	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr20	13338331	13338332	chr20:13338332:T:A	rs78536487	T	A	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr20	13608614	13608615	chr20:13608615:T:C	rs77503193	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr20	14268983	14268984	chr20:14268984:A:G	rs62207581	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr20	14498427	14498428	chr20:14498428:T:G	rs376577	T	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr20	14525995	14525996	chr20:14525996:G:A	rs2423797	G	A	A	Msx3.mouse_homeodomain_1	1	1	-	7.072174214487063	6.2243313436063765	GCCCTTAGAAATCAATTT
chr20	14646198	14646199	chr20:14646199:C:A	rs1932935	C	A	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr20	14712305	14712306	chr20:14712306:G:A	rs771798105	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr20	14784763	14784764	chr20:14784764:G:A	rs76406630	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr20	14830761	14830762	chr20:14830762:A:G	rs16995051	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr20	14889793	14889794	chr20:14889794:A:C	rs76567174	A	C	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr20	14993391	14993392	chr20:14993392:C:A	rs2423908	C	A	a	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr20	15032584	15032585	chr20:15032585:G:T	rs6110500	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	6.388118046018502	3.6878286690780344	CCAATTATTGAGCAAATG
chr20	15139676	15139677	chr20:15139677:A:G	rs1743471	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	10.711229117776192	6.7417981414073145	ACAATTACCCTGAAATTA
chr20	15146952	15146953	chr20:15146953:G:A	rs443742	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr20	15173691	15173692	chr20:15173692:T:C	rs6079691	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr20	16046390	16046391	chr20:16046391:T:C	rs6131768	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr20	16314728	16314729	chr20:16314729:C:G	rs6043882	C	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr20	16615438	16615439	chr20:16615439:C:T	rs993918537	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.691137337436764	7.494186312261355	ACAAGTAAAACGTAATTA
chr20	17072273	17072274	chr20:17072274:G:C	rs11700038	G	C	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr20	17493010	17493011	chr20:17493011:G:C	rs4814622	G	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr20	17493025	17493026	chr20:17493026:G:A	rs4814623	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	7.60597031954298	6.160847655976498	GCCATTAAGGGGCGATTT
chr20	17542894	17542895	chr20:17542895:C:G	rs16999369	C	G	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr20	18000409	18000410	chr20:18000410:G:C	rs12480848	G	C	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr20	18019324	18019325	chr20:18019325:C:G	rs78227791	C	G	C	Msx3.mouse_homeodomain_1	9	1	+	8.260182818046339	8.625869129604524	GTGATTAAGCACCAGTTA
chr20	18052343	18052344	chr20:18052344:T:G	rs6034945	T	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr20	18157257	18157258	chr20:18157258:C:T	rs1205228	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr20	18188290	18188291	chr20:18188291:A:G	rs41276424	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.624890584225953	2.036796365202802	GCGATAGACTGTCAATTA
chr20	18188292	18188293	chr20:18188293:T:C	rs3177093	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	6.624890584225953	3.499941430632099	GCGATAGACTGTCAATTA
chr20	18221919	18221920	chr20:18221920:G:T	rs8126104	G	T	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr20	18270691	18270692	chr20:18270692:A:G	rs2255172	A	G	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr20	18274065	18274066	chr20:18274066:G:A	rs74705903	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr20	18404339	18404340	chr20:18404340:T:C	rs79726483	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	6.187988149004274	2.2185571726353963	GCCATTAAGCTGTGCTTA
chr20	18531027	18531028	chr20:18531028:T:C	rs3762202	T	C	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr20	18534609	18534610	chr20:18534610:G:A	rs75761931	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	6.456006308130528	5.259055282955115	GCCATTAGCAGGCAATCT
chr20	18579034	18579035	chr20:18579035:G:T	rs181358216	G	T	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr20	18632597	18632598	chr20:18632598:T:C	rs6081263	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr20	18639787	18639788	chr20:18639788:T:C	rs143821211	T	C	G	Msx3.mouse_homeodomain_1	9	1	-	8.397418032704223	7.4568740403180795	TCCATTACAAAGAAATTG
chr20	18639804	18639805	chr20:18639805:G:A	rs6045530	G	A	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr20	18745946	18745947	chr20:18745947:T:C	rs6136502	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	6.426851199860033	-0.4806140370639731	CCCATTAGGAGGTGATTG
chr20	19176801	19176802	chr20:19176802:T:G	rs2876517	T	G	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr20	19210591	19210592	chr20:19210592:C:T	chr20:19210592:C:T	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr20	19335398	19335399	chr20:19335399:T:G	rs6514992	T	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr20	19454135	19454136	chr20:19454136:T:G	rs1023220380	T	G	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr20	19550521	19550522	chr20:19550522:A:G	rs16980823	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	9.193120831200062	7.135846652293867	GCAACTAAATCACAATTA
chr20	20447258	20447259	chr20:20447259:C:T	rs6035629	C	T	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr20	20594165	20594166	chr20:20594166:C:T	rs6132320	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr20	20594204	20594205	chr20:20594205:A:G	rs2295209	A	G	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr20	20742346	20742347	chr20:20742347:T:G	rs4813393	T	G	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr20	20959409	20959410	chr20:20959410:G:A	rs17735720	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr20	21211539	21211540	chr20:21211540:A:G	rs58592492	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr20	21400133	21400134	chr20:21400134:C:A	rs720324	C	A	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr20	22005142	22005143	chr20:22005143:A:G	rs1980551	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr20	22005167	22005168	chr20:22005168:C:T	rs117738109	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	7.062053547436681	8.06860288028189	ACACTTACGTGGTGATTA
chr20	22296174	22296175	chr20:22296175:T:G	rs4813452	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	13.545382124670692	10.661189068193316	CAAATTAACTTGCAATTA
chr20	22403931	22403932	chr20:22403932:C:T	rs6113663	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr20	22559682	22559683	chr20:22559683:T:A	rs1203875	T	A	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr20	22563007	22563008	chr20:22563008:T:C	rs1203883	T	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr20	22567655	22567656	chr20:22567656:C:T	rs2277763	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr20	22700481	22700482	chr20:22700482:C:A	rs75375869	C	A	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr20	23128564	23128565	chr20:23128565:C:T	rs6083010	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr20	23225532	23225533	chr20:23225533:G:T	rs1032431241	G	T	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr20	23258195	23258196	chr20:23258196:T:C	rs138675811	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr20	23360026	23360027	chr20:23360027:G:A	rs6036391	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr20	23520396	23520397	chr20:23520397:C:G	rs147903474	C	G	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr20	23603087	23603088	chr20:23603088:T:C	rs13037490	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr20	24101168	24101169	chr20:24101169:C:T	rs6049395	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr20	24110818	24110819	chr20:24110819:A:T	rs116887478	A	T	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr20	24131360	24131361	chr20:24131361:G:A	rs57816463	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	10.932185650086069	9.22195523110236	CTCATTATATGCTAATTA
chr20	24336764	24336765	chr20:24336765:T:C	rs6049608	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr20	24447176	24447177	chr20:24447177:C:T	rs6049698	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr20	24662775	24662776	chr20:24662776:T:C	rs62215350	T	C	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr20	25363594	25363595	chr20:25363595:G:A	rs6050564	G	A	g	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr20	25398432	25398433	chr20:25398433:C:T	rs2387884	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr20	25559937	25559938	chr20:25559938:C:T	rs73337349	C	T	T	Msx3.mouse_homeodomain_1	10	1	-	7.114382508513613	8.190973679450089	TCAATCAATCGACAATCA
chr20	25692772	25692773	chr20:25692773:A:G	rs6050793	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.188471331724248	3.6003771127010955	TAAATTAGTTACCAATAA
chr20	26008347	26008348	chr20:26008348:C:A	rs6107130	C	A	.	Msx3.mouse_homeodomain_1	1	1	+	9.116737983991044	6.416448607050577	CCAATTATGATGAAATAA
chr20	28565740	28565741	chr20:28565741:G:T	chr20:28565741:G:T	G	T	.	Msx3.mouse_homeodomain_1	1	1	-	7.335781233864581	4.635491856924114	TCCATTAAAACCCAAATA
chr20	29402833	29402834	chr20:29402834:A:G	rs1430034018	A	G	.	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr20	30298307	30298308	chr20:30298308:A:G	rs1923053	A	G	.	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr20	30319866	30319867	chr20:30319867:C:A	rs73242079	C	A	.	Msx3.mouse_homeodomain_1	12	1	+	8.294389497285508	5.783080737516683	ACCATTAGCAAGCGATTG
chr20	30319867	30319868	chr20:30319868:G:A	rs113800951	G	A	.	Msx3.mouse_homeodomain_1	13	1	+	8.294389497285508	10.351663676191706	ACCATTAGCAAGCGATTG
chr20	30347576	30347577	chr20:30347577:G:T	rs148372330	G	T	.	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr20	31072399	31072400	chr20:31072400:G:A	chr20:31072400:G:A	G	A	.	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr20	31072419	31072420	chr20:31072420:T:G	rs1483208298	T	G	.	Msx3.mouse_homeodomain_1	16	1	-	9.126272727106848	9.886161501036053	TTAATTAAATTCCAATAG
chr20	31072421	31072422	chr20:31072422:T:C	rs914780463	T	C	.	Msx3.mouse_homeodomain_1	14	1	-	9.126272727106848	4.538178508083697	TTAATTAAATTCCAATAG
chr20	32127246	32127247	chr20:32127247:G:A	rs6058528	G	A	A	Msx3.mouse_homeodomain_1	11	1	+	7.183367919244396	5.986416894068985	GTGCTTAGCACGTAATTA
chr20	32204494	32204495	chr20:32204495:T:G	rs74963132	T	G	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr20	32204502	32204503	chr20:32204503:C:A	rs6058547	C	A	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr20	32210864	32210865	chr20:32210865:A:G	rs6141636	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr20	33066640	33066641	chr20:33066641:T:C	rs761937	T	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr20	33077126	33077127	chr20:33077127:T:G	rs6088091	T	G	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr20	33401630	33401631	chr20:33401631:G:A	rs894865407	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr20	33720468	33720469	chr20:33720469:C:T	rs67611724	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr20	33954994	33954995	chr20:33954995:A:G	rs6142058	A	G	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr20	35191464	35191465	chr20:35191465:A:T	rs663550	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	9.649166028611102	3.570252609253244	GACATTAAAAAAAAATTA
chr20	35438500	35438501	chr20:35438501:A:C	rs17092635	A	C	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr20	35875782	35875783	chr20:35875783:T:C	rs17093205	T	C	t	Msx3.mouse_homeodomain_1	10	1	-	10.201455565358783	9.124864394422309	ACAATTAACTACAAATTT
chr20	36941607	36941608	chr20:36941608:G:A	rs1891643	G	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr20	37539219	37539220	chr20:37539220:G:A	rs6095172	G	A	g	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr20	37565543	37565544	chr20:37565544:C:T	rs6019425	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	5.881013819162061	5.033170948281376	CCAATGAGGCAGCATTTA
chr20	37597434	37597435	chr20:37597435:G:A	rs4810916	G	A	G	Msx3.mouse_homeodomain_1	9	1	-	10.532907219023024	11.42499625109427	TTAATTATACGCAAATTA
chr20	37864524	37864525	chr20:37864525:C:T	rs6063714	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr20	37972394	37972395	chr20:37972395:T:C	rs750088267	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr20	38275949	38275950	chr20:38275950:T:C	rs117450637	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.209887290290373	4.240456313921496	ACCATTATGTTACAATTG
chr20	38275972	38275973	chr20:38275973:T:C	rs6098928	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr20	38315257	38315258	chr20:38315258:T:G	rs7273966	T	G	N	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr20	38712120	38712121	chr20:38712121:T:C	rs112531310	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.0963749055928504	3.126943929223972	CCAATAAATATGGAATCA
chr20	38786858	38786859	chr20:38786859:T:C	rs2425369	T	C	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr20	39294268	39294269	chr20:39294269:A:G	rs9636515	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr20	39298258	39298259	chr20:39298259:G:A	rs17186303	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr20	39755548	39755549	chr20:39755549:A:G	rs62210097	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.312275663086034	1.4048104261620287	CTCATTAAACTCTAATTT
chr20	39773101	39773102	chr20:39773102:C:T	rs78898429	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr20	40423485	40423486	chr20:40423486:G:A	rs57082097	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr20	40540228	40540229	chr20:40540229:A:C	rs16989143	A	C	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr20	40713285	40713286	chr20:40713286:C:T	rs139996872	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr20	41004522	41004523	chr20:41004523:T:C	rs73257865	T	C	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr20	41433142	41433143	chr20:41433143:T:G	rs34940339	T	G	T	Msx3.mouse_homeodomain_1	11	1	-	10.05255684718174	11.334973413067413	CCAATAAAATGAAAATTA
chr20	41500589	41500590	chr20:41500590:G:C	rs1010901	G	C	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr20	41875140	41875141	chr20:41875141:C:A	rs6072515	C	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr20	42053500	42053501	chr20:42053501:G:A	rs73117873	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr20	42218845	42218846	chr20:42218846:T:C	rs8115491	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr20	42281934	42281935	chr20:42281935:T:C	rs1984400	T	C	T	Msx3.mouse_homeodomain_1	12	1	+	10.645500340904267	12.09062300447075	GCAATTCAATTATAATTA
chr20	42303216	42303217	chr20:42303217:T:C	rs13037480	T	C	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr20	42379867	42379868	chr20:42379868:G:A	rs78570746	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr20	42474532	42474533	chr20:42474533:G:A	rs6130145	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr20	42485578	42485579	chr20:42485579:C:T	rs6093656	C	T	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr20	43046993	43046994	chr20:43046994:C:G	rs2425566	C	G	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr20	43466853	43466854	chr20:43466854:A:G	rs34867188	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr20	43489840	43489841	chr20:43489841:G:T	rs6073109	G	T	T	Msx3.mouse_homeodomain_1	1	1	-	13.696833276307654	10.99654389936719	CCAATTAAACATTAATTA
chr20	43590553	43590554	chr20:43590554:G:A	rs62224813	G	A	G	Msx3.mouse_homeodomain_1	14	1	-	7.139364427309951	6.3735831142145845	ACTATTAGGAACTACTTA
chr20	43590580	43590581	chr20:43590581:T:C	rs6065630	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr20	43590586	43590587	chr20:43590587:C:A	rs776484091	C	A	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr20	43845654	43845655	chr20:43845655:A:G	rs6073220	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.746633841624417	3.158539622601268	CCAATTAGAATTAAATTC
chr20	43920175	43920176	chr20:43920176:G:A	rs6073253	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr20	43926040	43926041	chr20:43926041:T:C	rs742640	T	C	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr20	44397337	44397338	chr20:44397338:G:A	rs77346731	G	A	g	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr20	44886314	44886315	chr20:44886315:A:G	rs115750309	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr20	44968538	44968539	chr20:44968539:A:G	rs75641996	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.211125451144395	2.623031232121244	ACCATAGTGATCCAATTA
chr20	45037509	45037510	chr20:45037510:A:G	rs6130735	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr20	45347052	45347053	chr20:45347053:G:T	rs1981429	G	T	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr20	45379791	45379792	chr20:45379792:G:A	rs2741639	G	A	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr20	45381495	45381496	chr20:45381496:A:G	rs2741629	A	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr20	45416929	45416930	chr20:45416930:A:C	rs1028307	A	C	C	Msx3.mouse_homeodomain_1	17	1	+	8.308947699098884	3.722091117972376	GCAAATAGCAAACAATTA
chr20	45608347	45608348	chr20:45608348:C:G	rs1487320	C	G	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr20	45865863	45865864	chr20:45865864:G:A	rs6124751	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr20	45937875	45937876	chr20:45937876:C:T	rs555710464	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr20	46151766	46151767	chr20:46151767:G:A	rs13045771	G	A	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr20	46764778	46764779	chr20:46764779:A:G	rs742322	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr20	46811407	46811408	chr20:46811408:A:G	rs182752834	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	7.107280781303197	4.5391211841199945	GCCATTTCTCATCAATTA
chr20	46930737	46930738	chr20:46930738:T:C	rs115993851	T	C	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr20	47443822	47443823	chr20:47443823:T:C	rs6063114	T	C	t	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr20	47457652	47457653	chr20:47457653:C:T	rs147092371	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr20	47550552	47550553	chr20:47550553:G:A	rs150284690	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr20	47847890	47847891	chr20:47847891:T:C	rs2008058	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr20	47876900	47876901	chr20:47876901:A:G	rs34762969	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	7.567500859906793	5.125423632975236	GAAATAAGAAACCATTTA
chr20	47991110	47991111	chr20:47991111:G:A	rs4810745	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	10.584257858518825	8.874027439535116	TCAATTAAAAACCTATTG
chr20	47999852	47999853	chr20:47999853:A:C	rs11906231	A	C	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr20	48169862	48169863	chr20:48169863:A:G	rs228199	A	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr20	48262498	48262499	chr20:48262499:T:C	rs226810	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	7.809168613766077	7.479227661049978	TCACTTATGAGCTGATTA
chr20	48317775	48317776	chr20:48317776:T:C	rs400164	T	C	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr20	48490917	48490918	chr20:48490918:C:T	rs2010703	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr20	48659419	48659420	chr20:48659420:T:C	rs73144004	T	C	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr20	48768327	48768328	chr20:48768328:A:C	rs2426096	A	C	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr20	49147737	49147738	chr20:49147738:C:T	rs35888516	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr20	49889211	49889212	chr20:49889212:A:T	rs79630422	A	T	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr20	49928902	49928903	chr20:49928903:G:A	rs117410552	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr20	49961698	49961699	chr20:49961699:G:T	rs6122852	G	T	g	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr20	49997627	49997628	chr20:49997628:G:C	rs6067311	G	C	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr20	50048336	50048337	chr20:50048337:T:G	rs6125878	T	G	-	Msx3.mouse_homeodomain_1	15	1	+	6.832129712804572	-0.0753355241194329	CTTATTGAGCACCAATTG
chr20	50053250	50053251	chr20:50053251:C:T	rs13036928	C	T	c	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr20	50178875	50178876	chr20:50178876:A:G	rs6125931	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	10.808539878920538	11.917049434085282	ATAATTAAAGTCCATTTA
chr20	50475558	50475559	chr20:50475559:G:A	rs6126016	G	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr20	50493664	50493665	chr20:50493665:G:A	rs79818866	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	8.826417286176653	8.053577109434759	ACCATTTGGTAGCAATTA
chr20	50533176	50533177	chr20:50533177:A:C	rs181661482	A	C	A	Msx3.mouse_homeodomain_1	8	1	+	7.902561005560363	6.982994180927809	GTTATTACATACTAATTT
chr20	50556641	50556642	chr20:50556642:G:A	rs2426159	G	A	g	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr20	50732515	50732516	chr20:50732516:T:C	rs768395800	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	7.485079176380192	4.968210548443115	GTAATTATCAGCAGATTG
chr20	50919972	50919973	chr20:50919973:T:C	rs2426207	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.7190405665077515	3.130946347484601	CCTCTTAAAGTGCCATTA
chr20	51153511	51153512	chr20:51153512:A:T	rs2426235	A	T	T	Msx3.mouse_homeodomain_1	14	1	+	8.895676650552083	4.568916299202527	TCATTTAGCAAACAATTA
chr20	51298108	51298109	chr20:51298109:T:A	rs6096366	T	A	c	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr20	51376180	51376181	chr20:51376181:C:T	rs6013165	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr20	51457152	51457153	chr20:51457153:T:A	chr20:51457153:T:A	T	A	T	Msx3.mouse_homeodomain_1	10	1	-	7.678730634025221	7.1851591100501	TCAATTAGGAAGTCATCA
chr20	51631067	51631068	chr20:51631068:C:T	rs73267750	C	T	c	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr20	51693062	51693063	chr20:51693063:A:G	rs6013258	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	5.852767434520538	4.912223442134392	CCACTCACCAGGCACTTA
chr20	51767967	51767968	chr20:51767968:C:A	chr20:51767968:C:A	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	7.98274868231647	5.471439922547645	TTAATTACGGAACAATAA
chr20	51767973	51767974	chr20:51767974:A:G	rs555831464	A	G	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr20	51781461	51781462	chr20:51781462:C:T	rs761212	C	T	c	Msx3.mouse_homeodomain_1	8	1	-	9.35924167925874	10.365791012103948	GCAATTACGTAACAATGA
chr20	51934152	51934153	chr20:51934153:A:T	rs4809880	A	T	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr20	51934153	51934154	chr20:51934154:C:A	rs4811268	C	A	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr20	51949288	51949289	chr20:51949289:A:G	rs6068022	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.813575110155257	2.225480891132107	GCATTAAGAAAGCAATTG
chr20	52012293	52012294	chr20:52012294:C:T	rs17730779	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	8.389667958745012	9.499483496068606	TCTATTAGGAGGAAATTA
chr20	52046715	52046716	chr20:52046716:A:G	rs2426412	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr20	52465983	52465984	chr20:52465984:T:C	rs7274379	T	C	t	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr20	52530228	52530229	chr20:52530229:C:T	rs139114361	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr20	52618958	52618959	chr20:52618959:A:G	rs13040587	A	G	G	Msx3.mouse_homeodomain_1	1	1	+	8.442670251521967	7.878610771434118	AAAATTAATTTCTCATTA
chr20	53105006	53105007	chr20:53105007:G:A	rs2800997	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr20	53154151	53154152	chr20:53154152:A:G	rs6123255	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	9.129922632808658	8.05333146187218	CCAATTTACCAGCAATCA
chr20	53294659	53294660	chr20:53294660:G:A	rs6013656	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	8.618840430594265	7.421889405418855	CCATTTAAAAAGCATTTA
chr20	53498447	53498448	chr20:53498448:T:C	rs6097460	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.41370167348894	3.825607454465791	TCATTTATTTAACAATTA
chr20	53498463	53498464	chr20:53498464:C:T	rs4642000	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr20	53590785	53590786	chr20:53590786:T:C	rs1053340923	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr20	53669342	53669343	chr20:53669343:C:G	rs12624860	C	G	C	Msx3.mouse_homeodomain_1	0	1	-	6.832028505920122	6.464676996045509	GTTATTAGGCAGCTATTA
chr20	53806301	53806302	chr20:53806302:C:A	rs2904374	C	A	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr20	53837397	53837398	chr20:53837398:C:T	rs6022791	C	T	t	Msx3.mouse_homeodomain_1	12	1	+	7.988252853593754	6.543130190027271	GTAATCAGCGACCATTTA
chr20	53900208	53900209	chr20:53900209:G:A	rs66914754	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr20	54030386	54030387	chr20:54030387:C:T	rs460076	C	T	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr20	54127574	54127575	chr20:54127575:T:A	rs4811492	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	6.510215985061317	3.1394297891825187	CCAATTGGCCAACAGTTA
chr20	54141280	54141281	chr20:54141281:C:T	rs11907046	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.799122969427016	6.3540003058605325	ACAATTAGTAACCCATTC
chr20	54141302	54141303	chr20:54141303:G:A	rs16999008	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr20	54184620	54184621	chr20:54184621:G:A	rs6023007	G	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr20	54184653	54184654	chr20:54184654:C:T	rs6064053	C	T	C	Msx3.mouse_homeodomain_1	14	1	+	7.316586638971983	6.550805325876616	TTAATTTAAGGCCACTTA
chr20	54184662	54184663	chr20:54184663:C:T	rs6064054	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr20	54207587	54207588	chr20:54207588:T:C	rs6023036	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr20	54290935	54290936	chr20:54290936:A:G	rs540572168	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	10.932185650086069	9.925636317240858	CTCATTATATGCTAATTA
chr20	54636861	54636862	chr20:54636862:C:T	rs185779488	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr20	54636880	54636881	chr20:54636881:G:A	rs55637621	G	A	A	Msx3.mouse_homeodomain_1	8	1	+	6.299398282260553	7.305947615105761	ACAGTCACGAGACAATTA
chr20	54726766	54726767	chr20:54726767:T:C	rs6098207	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr20	54829399	54829400	chr20:54829400:G:C	rs6091985	G	C	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr20	55488633	55488634	chr20:55488634:A:G	rs11907433	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr20	55755758	55755759	chr20:55755759:C:T	rs726121	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	10.008079028531473	9.160236157650786	TCTATTTAAATGCAATTA
chr20	55769578	55769579	chr20:55769579:C:T	rs8115649	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr20	55928379	55928380	chr20:55928380:G:C	rs228984	G	C	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr20	56425331	56425332	chr20:56425332:A:G	rs148515143	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr20	56553516	56553517	chr20:56553517:G:A	rs73153084	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr20	56780377	56780378	chr20:56780378:T:A	rs2426677	T	A	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr20	56809687	56809688	chr20:56809688:G:A	rs6069887	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr20	56818498	56818499	chr20:56818499:C:T	rs78752142	C	T	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr20	56818554	56818555	chr20:56818555:A:C	rs34334717	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	8.387454557501613	3.3139217813922826	CTGATAAAAAAGGAATTA
chr20	56925058	56925059	chr20:56925059:T:A	rs182959857	T	A	T	Msx3.mouse_homeodomain_1	10	1	+	9.860511557823905	10.354083081799029	CCTATTAGATTCCAATCA
chr20	57031230	57031231	chr20:57031231:G:A	rs186101818	G	A	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr20	57201452	57201453	chr20:57201453:G:A	rs74938363	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr20	57491807	57491808	chr20:57491808:A:G	rs71329747	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr20	57500314	57500315	chr20:57500315:C:T	rs113098798	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr20	57547329	57547330	chr20:57547330:G:A	rs117612358	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr20	57754075	57754076	chr20:57754076:A:G	rs4811916	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr20	57761673	57761674	chr20:57761674:A:T	rs6070254	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr20	57826286	57826287	chr20:57826287:T:C	rs76754243	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	9.07167223562146	7.995081064684986	ACAATGAAACAGAAATTA
chr20	57854674	57854675	chr20:57854675:G:A	rs6025835	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr20	58075193	58075194	chr20:58075194:C:T	rs915041	C	T	t	Msx3.mouse_homeodomain_1	1	1	+	6.80762496835239	5.959782097471705	CCCCTTAAACAAGAATTA
chr20	58075222	58075223	chr20:58075223:G:C	rs16981665	G	C	c	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr20	58079365	58079366	chr20:58079366:T:G	rs114813435	T	G	t	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr20	58140958	58140959	chr20:58140959:A:C	rs537450281	A	C	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr20	58378613	58378614	chr20:58378614:T:C	rs74423812	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr20	58847459	58847460	chr20:58847460:T:C	rs73129548	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr20	58863398	58863399	chr20:58863399:G:C	rs3787496	G	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr20	58908599	58908600	chr20:58908600:T:C	rs234630	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr20	59011897	59011898	chr20:59011898:T:G	rs151336	T	G	G	Msx3.mouse_homeodomain_1	11	1	-	9.515487897734044	10.797904463619716	CTGATTATATGATAATTA
chr20	59016297	59016298	chr20:59016298:T:G	rs79941926	T	G	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr20	59063737	59063738	chr20:59063738:T:G	rs73303095	T	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr20	59087924	59087925	chr20:59087925:A:G	rs4449199	A	G	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr20	59144235	59144236	chr20:59144236:G:A	rs461588	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr20	59153833	59153834	chr20:59153834:A:C	rs259990	A	C	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr20	59175794	59175795	chr20:59175795:G:A	rs73306898	G	A	a	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr20	59362713	59362714	chr20:59362714:T:A	rs197817	T	A	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr20	59467110	59467111	chr20:59467111:G:A	rs77859350	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr20	59693697	59693698	chr20:59693698:A:G	rs6128664	A	G	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr20	59733449	59733450	chr20:59733450:A:T	rs1182463	A	T	T	Msx3.mouse_homeodomain_1	10	1	-	8.1412809095184	8.63485243349352	GCACTGAAAATCCAATTG
chr20	59733476	59733477	chr20:59733477:A:T	rs1182464	A	T	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr20	59758278	59758279	chr20:59758279:A:T	rs1182481	A	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr20	59813481	59813482	chr20:59813482:A:G	rs1338929	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	7.127654810195648	4.685577583264092	GTGCTTACCCCCCAATTA
chr20	59850199	59850200	chr20:59850200:G:C	rs149885514	G	C	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr20	60275626	60275627	chr20:60275627:G:A	rs62206733	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr20	60319846	60319847	chr20:60319847:T:C	rs11700264	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr20	60319881	60319882	chr20:60319882:G:A	rs56156148	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr20	60395524	60395525	chr20:60395525:T:C	rs6092934	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr20	61133793	61133794	chr20:61133794:A:G	rs2281573	A	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr20	61161895	61161896	chr20:61161896:T:C	rs1265406228	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr20	61184329	61184330	chr20:61184330:A:G	rs6513563	A	G	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr20	61302034	61302035	chr20:61302035:T:C	rs2427058	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	8.619626170854854	6.102757542917778	ATACTTAAGTTTTAATTA
chr20	61521026	61521027	chr20:61521027:G:A	rs150584980	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr20	61758321	61758322	chr20:61758322:C:T	rs34494597	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	7.33798136909246	6.490138498211775	CCAGTCACAACGTAATTA
chr20	62367953	62367954	chr20:62367954:G:A	rs115452596	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr20	62831856	62831857	chr20:62831857:C:T	rs760084	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr20	62924825	62924826	chr20:62924826:T:C	rs73619440	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr20	62974543	62974544	chr20:62974544:G:A	rs1180912940	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr20	63022326	63022327	chr20:63022327:T:C	rs6011536	T	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr20	63072896	63072897	chr20:63072897:C:A	rs7270735	C	A	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr20	63088736	63088737	chr20:63088737:T:C	rs35168953	T	C	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr20	63103051	63103052	chr20:63103052:G:A	rs2427497	G	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr20	63140678	63140679	chr20:63140679:A:C	rs6122382	A	C	A	Msx3.mouse_homeodomain_1	9	1	-	8.883835813931139	8.357433093418077	CTAATTACATTCCACTTG
chr20	63497226	63497227	chr20:63497227:T:C	rs1741618	T	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr20	63497227	63497228	chr20:63497228:G:T	chr20:63497228:G:T	G	T	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr20	63504782	63504783	chr20:63504783:T:C	rs8115224	T	C	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr20	63504785	63504786	chr20:63504786:G:C	rs8118762	G	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr20	63661055	63661056	chr20:63661056:T:C	rs73920920	T	C	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr20	63661093	63661094	chr20:63661094:G:A	rs75526725	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr20	64263070	64263071	chr20:64263071:C:T	rs2427636	C	T	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr21	8993866	8993867	chr21:8993867:A:C	rs1905887	A	C	.	Msx3.mouse_homeodomain_1	16	1	-	9.484511700366312	4.410978924256982	CTAATTAAAACATACTTA
chr21	8993869	8993870	chr21:8993870:T:A	rs1905888	T	A	.	Msx3.mouse_homeodomain_1	13	1	-	9.484511700366312	5.302103237526345	CTAATTAAAACATACTTA
chr21	8997459	8997460	chr21:8997460:C:A	rs76535991	C	A	.	Msx3.mouse_homeodomain_1	6	1	-	7.94171316073671	6.791508180555748	TCACTTGTATAGAAATTA
chr21	8997475	8997476	chr21:8997476:G:C	rs4103409	G	C	.	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr21	9004376	9004377	chr21:9004377:T:G	rs77535838	T	G	.	Msx3.mouse_homeodomain_1	2	1	-	8.113517349040919	5.730929907570196	TCAATTGTTTAGCTATTA
chr21	9005024	9005025	chr21:9005025:A:G	rs80255122	A	G	.	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr21	10428210	10428211	chr21:10428211:G:A	rs7281632	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr21	10459290	10459291	chr21:10459291:C:T	rs2989068	C	T	N	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr21	10653492	10653493	chr21:10653493:C:T	rs28896785	C	T	.	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr21	10685059	10685060	chr21:10685060:C:G	rs111669253	C	G	.	Msx3.mouse_homeodomain_1	16	1	+	10.919576527629218	8.970992905113743	TCCATTAAATTCCAATCA
chr21	14308497	14308498	chr21:14308498:G:A	rs1153322	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr21	14723269	14723270	chr21:14723270:C:T	rs2822877	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	8.556902666701848	7.709059795821164	TCTATCAAGGAACAATTA
chr21	14959320	14959321	chr21:14959321:T:C	rs8134386	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr21	14959359	14959360	chr21:14959360:A:G	rs2178997	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr21	15062104	15062105	chr21:15062105:C:A	rs8133012	C	A	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr21	15355296	15355297	chr21:15355297:A:G	rs73177157	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr21	15631586	15631587	chr21:15631587:C:G	rs2823405	C	G	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr21	15749319	15749320	chr21:15749320:A:G	rs10482876	A	G	G	Msx3.mouse_homeodomain_1	3	1	-	8.556261779298879	10.803437754914068	ATATTTAGAATACAATTA
chr21	16028390	16028391	chr21:16028391:T:C	rs743079	T	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr21	16305290	16305291	chr21:16305291:A:G	rs564571248	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.9703245154510975	1.871778835581964	GCTATAGTAAGCCAATTA
chr21	16378591	16378592	chr21:16378592:A:G	rs9979218	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	10.837252242732955	3.9297870058089495	GTAATTATTTACTCATTA
chr21	16421520	16421521	chr21:16421521:C:G	rs62216417	C	G	C	Msx3.mouse_homeodomain_1	10	1	-	6.783285275531485	6.322332622619124	GAAATCAGGAGGCAATTT
chr21	16538138	16538139	chr21:16538139:A:C	rs17276124	A	C	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr21	16573556	16573557	chr21:16573557:A:G	rs76111953	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	8.377847650374722	5.98486190786422	ACAATTACTATGTAGTTA
chr21	16579470	16579471	chr21:16579471:A:G	rs17000140	A	G	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr21	17045249	17045250	chr21:17045250:A:G	rs2205317	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr21	17045413	17045414	chr21:17045414:T:C	rs114725918	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr21	17461629	17461630	chr21:17461630:C:A	rs17760240	C	A	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr21	17461667	17461668	chr21:17461668:G:A	rs113021929	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr21	17511975	17511976	chr21:17511976:T:C	chr21:17511976:T:C	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.988908851602773	6.019477875233892	TTAATTAGCTTCCACTTA
chr21	17537436	17537437	chr21:17537437:T:C	rs527367128	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	10.07921157210722	7.511051974924016	ACAATAAAACAGCAATCA
chr21	17733026	17733027	chr21:17733027:A:G	rs2032289	A	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr21	17999552	17999553	chr21:17999553:C:G	rs9305834	C	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr21	18659981	18659982	chr21:18659982:G:A	rs9978574	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	11.208204141677665	10.011253116502257	ACAATTATAATGTAATCA
chr21	18668409	18668410	chr21:18668410:T:G	rs11909121	T	G	G	Msx3.mouse_homeodomain_1	2	1	-	9.783952469491052	7.401365028020327	CCAATTGGCCAGAAATTA
chr21	18679035	18679036	chr21:18679036:C:T	rs2824988	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr21	18832760	18832761	chr21:18832761:A:G	rs1540004	A	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr21	19119424	19119425	chr21:19119425:G:A	rs8130084	G	A	A	Msx3.mouse_homeodomain_1	17	1	+	8.364026052902865	10.932185650086069	CTCATTATATGCTAATTG
chr21	19524225	19524226	chr21:19524226:A:G	rs73213920	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	8.547190380262286	6.154204637751783	ATAATTACTAATCAATAA
chr21	19622198	19622199	chr21:19622199:A:T	rs8129479	A	T	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr21	19836282	19836283	chr21:19836283:G:A	rs12172913	G	A	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr21	20268164	20268165	chr21:20268165:C:A	rs2826117	C	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr21	20574388	20574389	chr21:20574389:C:G	rs2826404	C	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr21	20789453	20789454	chr21:20789454:T:C	rs67937324	T	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr21	20999270	20999271	chr21:20999271:T:A	rs7510552	T	A	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr21	21546501	21546502	chr21:21546502:A:T	rs9976899	A	T	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr21	22246706	22246707	chr21:22246707:T:C	rs73225759	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr21	22294800	22294801	chr21:22294801:G:A	rs35810053	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr21	23660811	23660812	chr21:23660812:G:A	rs185898597	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr21	23966749	23966750	chr21:23966750:A:G	rs9983334	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.614620272080825	1.5160745922116923	TTGATAGAGAAGCAATTA
chr21	24074892	24074893	chr21:24074893:G:A	rs1910617	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr21	24492471	24492472	chr21:24492472:A:G	rs58334192	A	G	g	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr21	24870045	24870046	chr21:24870046:C:T	rs2829443	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr21	25110787	25110788	chr21:25110788:C:T	rs2829543	C	T	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr21	25362872	25362873	chr21:25362873:C:T	rs2187053	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr21	25952560	25952561	chr21:25952561:G:A	rs2829995	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr21	26082839	26082840	chr21:26082840:C:T	rs7278760	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr21	26126272	26126273	chr21:26126273:T:G	rs2830069	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	7.987796948268383	5.103603891791007	GCACTTCTATTCTAATTA
chr21	26210940	26210941	chr21:26210941:T:C	rs462141	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr21	26782680	26782681	chr21:26782681:A:G	rs2830498	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr21	26795926	26795927	chr21:26795927:C:T	rs2830533	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr21	26800936	26800937	chr21:26800937:T:C	rs16979116	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr21	26926726	26926727	chr21:26926727:A:G	rs229086	A	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr21	27094450	27094451	chr21:27094451:A:G	rs2065250	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr21	27405261	27405262	chr21:27405262:C:G	rs11088032	C	G	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr21	27841590	27841591	chr21:27841591:C:T	rs534470232	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr21	28003874	28003875	chr21:28003875:A:G	rs4336026	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr21	28772140	28772141	chr21:28772141:G:A	rs78848610	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.509282573424358	8.400773018259613	GAAATCAAAGCCTAATTA
chr21	29091274	29091275	chr21:29091275:T:G	rs76218876	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	10.65404487347715	3.7465796365531445	CTAATTATCCACCAATTT
chr21	29166797	29166798	chr21:29166798:A:G	rs66723060	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr21	29185188	29185189	chr21:29185189:T:C	rs963441	T	C	C	Msx3.mouse_homeodomain_1	11	1	+	11.575742915940626	13.285973334924336	TCAATTAAAACTAAATTA
chr21	29384264	29384265	chr21:29384265:C:T	rs2832307	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	7.076705599779163	5.63158293621268	CCAATTTCAGAGCAATGA
chr21	29541271	29541272	chr21:29541272:T:C	rs1977525	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	8.761965076438525	6.70469089753233	GTAATTAAAAGTCACTTG
chr21	29612926	29612927	chr21:29612927:G:A	rs363423	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	10.39353644927264	9.545693578391957	GCAATTAAAATGCTATTT
chr21	29896252	29896253	chr21:29896253:T:A	rs462393	T	A	A	Msx3.mouse_homeodomain_1	0	1	+	9.186361286776965	9.26879398574701	TCATTTGAAATGCAATTA
chr21	30172407	30172408	chr21:30172408:C:T	rs16986112	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr21	30332653	30332654	chr21:30332654:T:A	rs1015633	T	A	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr21	31278917	31278918	chr21:31278918:T:C	rs117163671	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr21	31355195	31355196	chr21:31355196:G:A	rs530211499	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr21	31376516	31376517	chr21:31376517:G:A	rs2300359	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr21	31396085	31396086	chr21:31396086:T:G	rs725803	T	G	T	Msx3.mouse_homeodomain_1	6	1	-	9.181217383507054	4.936201577034893	CCCATCATATAATAATTA
chr21	31730497	31730498	chr21:31730498:A:G	rs9636600	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr21	31983446	31983447	chr21:31983447:G:A	rs737103	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr21	32508403	32508404	chr21:32508404:C:T	rs62214677	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr21	32546094	32546095	chr21:32546095:A:T	rs113696667	A	T	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr21	32555457	32555458	chr21:32555458:A:C	rs2833889	A	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr21	32708157	32708158	chr21:32708158:G:A	rs66528773	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr21	32912052	32912053	chr21:32912053:C:A	rs28464592	C	A	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr21	33024283	33024284	chr21:33024284:A:G	rs9975039	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	11.047778208070888	9.971187037134413	CTACTTGAAGACCAATTA
chr21	33131952	33131953	chr21:33131953:G:T	rs111507768	G	T	-	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr21	33231939	33231940	chr21:33231940:A:G	rs7280901	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr21	33492704	33492705	chr21:33492705:C:A	rs79777044	C	A	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr21	34362883	34362884	chr21:34362884:A:G	rs34886364	A	G	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr21	34537781	34537782	chr21:34537782:G:A	rs2284575	G	A	G	Msx3.mouse_homeodomain_1	12	1	+	7.868482743301976	8.856557002149309	ACAATTTACACCGAATTA
chr21	34538051	34538052	chr21:34538052:G:T	rs71329073	G	T	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr21	34749727	34749728	chr21:34749728:C:T	rs62213853	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr21	34749756	34749757	chr21:34749757:T:A	rs7275933	T	A	A	Msx3.mouse_homeodomain_1	6	1	-	10.92324391491708	7.330961707804561	AAAATTAAAAAAAAATTA
chr21	34934268	34934269	chr21:34934269:A:T	rs11701937	A	T	a	Msx3.mouse_homeodomain_1	16	1	-	10.258821793039782	6.373983865516724	ATGATTAAAAAAAAATTA
chr21	35091540	35091541	chr21:35091541:T:G	rs2834755	T	G	G	Msx3.mouse_homeodomain_1	6	1	-	6.924412533369884	2.6793967268977226	GCAGTTACCTCCCAATTT
chr21	35840422	35840423	chr21:35840423:G:C	rs1037035635	G	C	G	Msx3.mouse_homeodomain_1	14	1	-	9.10094682858901	8.07383164782005	GTACTTAGAGAGCACTTA
chr21	35922533	35922534	chr21:35922534:C:T	rs958339	C	T	T	Msx3.mouse_homeodomain_1	8	1	-	8.266409869604125	9.272959202449332	ACAATTAAGCACAATTTA
chr21	35988570	35988571	chr21:35988571:T:C	rs2850072	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.390307516517336	5.420876540148455	GCAATCATGATCCTATTA
chr21	36159923	36159924	chr21:36159924:G:A	rs1028997	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr21	36567502	36567503	chr21:36567503:T:C	rs412775	T	C	C	Msx3.mouse_homeodomain_1	5	1	+	9.279317939929705	6.886332197419203	TTAATTACAGCACGATTA
chr21	36567509	36567510	chr21:36567510:C:T	rs1176012765	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	9.279317939929705	7.834195276363222	TTAATTACAGCACGATTA
chr21	36690954	36690955	chr21:36690955:A:G	rs984071295	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr21	36756629	36756630	chr21:36756630:C:T	rs150665851	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr21	36756630	36756631	chr21:36756631:G:A	rs61732507	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr21	37029860	37029861	chr21:37029861:G:A	rs11088376	G	A	a	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr21	37029866	37029867	chr21:37029867:A:G	rs11088377	A	G	a	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr21	37460311	37460312	chr21:37460312:A:G	rs2835756	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr21	37771723	37771724	chr21:37771724:C:T	rs2835950	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	7.803600222003845	6.695090666839099	GAAATTAGGTGGTCATTA
chr21	37818160	37818161	chr21:37818161:C:G	rs73206085	C	G	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr21	37818210	37818211	chr21:37818211:C:T	rs2409940	C	T	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr21	37917642	37917643	chr21:37917643:C:T	rs6517442	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr21	38281135	38281136	chr21:38281136:G:A	rs9982723	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr21	38374414	38374415	chr21:38374415:T:C	rs62217877	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr21	38702471	38702472	chr21:38702472:C:T	rs762384	C	T	t	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr21	39176160	39176161	chr21:39176161:A:T	rs2245455	A	T	T	Msx3.mouse_homeodomain_1	15	1	-	8.473566599372095	2.3946531800142394	TTTCTTAATGACCAATTA
chr21	39190203	39190204	chr21:39190204:C:T	rs2225425	C	T	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr21	39190238	39190239	chr21:39190239:A:T	rs2297257	A	T	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr21	39339539	39339540	chr21:39339540:T:C	rs75692851	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr21	39339550	39339551	chr21:39339551:C:A	rs2026267	C	A	C	Msx3.mouse_homeodomain_1	17	1	-	6.6924894520369795	5.889862853341384	CTTATCAGACAGCAATTG
chr21	39518516	39518517	chr21:39518517:G:T	rs191202784	G	T	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr21	39972752	39972753	chr21:39972753:C:A	rs34571250	C	A	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr21	40452924	40452925	chr21:40452925:A:G	rs1040315	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.829613874744331	0.9221486378203259	GAACTTAATATGGAATTA
chr21	40618822	40618823	chr21:40618823:A:G	rs2837753	A	G	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr21	40870581	40870582	chr21:40870582:A:G	rs2142089	A	G	G	Msx3.mouse_homeodomain_1	9	1	-	7.813626746575818	6.921537714504571	ACTATTATCTTCCACTTA
chr21	41058083	41058084	chr21:41058084:A:C	rs2104809	A	C	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr21	41136915	41136916	chr21:41136916:C:T	rs13051106	C	T	C	Msx3.mouse_homeodomain_1	5	1	+	6.75326848294491	9.146254225455412	CCACTCATGGACCAATCA
chr21	41229286	41229287	chr21:41229287:G:A	rs2837971	G	A	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr21	41244803	41244804	chr21:41244804:T:C	rs2837982	T	C	T	Msx3.mouse_homeodomain_1	11	1	+	10.347414879204411	12.057645298188124	GCACTTATTTGTCAATTA
chr21	41446587	41446588	chr21:41446588:G:A	rs469483	G	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr21	41447277	41447278	chr21:41447278:G:A	rs467574	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr21	41466270	41466271	chr21:41466271:G:A	rs55896064	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr21	41673719	41673720	chr21:41673720:C:T	rs80311167	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr21	41673733	41673734	chr21:41673734:G:A	rs3850712	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr21	41997287	41997288	chr21:41997288:T:C	rs148494305	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr21	42013047	42013048	chr21:42013048:T:C	rs9984999	T	C	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr21	42013763	42013764	chr21:42013764:A:T	rs117933599	A	T	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr21	42026377	42026378	chr21:42026378:C:T	rs145769720	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr21	42465440	42465441	chr21:42465441:G:A	rs9974527	G	A	G	Msx3.mouse_homeodomain_1	9	1	-	9.83072607742367	10.722815109494917	ACAATTAAACATTAATCA
chr21	43016066	43016067	chr21:43016067:G:A	rs2839619	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr21	43362851	43362852	chr21:43362852:A:C	rs634978	A	C	.	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr21	43362851	43362852	chr21:43362852:A:T	chr21:43362852:A:T	A	T	.	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr21	43740813	43740814	chr21:43740814:C:G	rs747450256	C	G	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr21	43851784	43851785	chr21:43851785:T:C	rs9974624	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr21	44061141	44061142	chr21:44061142:T:A	rs182276441	T	A	t	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr21	44084467	44084468	chr21:44084468:T:A	rs760548982	T	A	T	Msx3.mouse_homeodomain_1	3	1	-	7.806334480923428	2.6789841407753374	AACATGAAAAAGCAATTA
chr21	44745687	44745688	chr21:44745688:A:G	rs9974599	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	6.2572844099990546	5.147468872675458	GCCATCAAACTCCAATCG
chr21	45004124	45004125	chr21:45004125:A:G	rs9808814	A	G	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr21	45154657	45154658	chr21:45154658:G:C	rs372549	G	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr21	45168901	45168902	chr21:45168902:G:A	rs28782181	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr21	45767074	45767075	chr21:45767075:T:C	rs74943027	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr21	45767084	45767085	chr21:45767085:C:T	rs374848917	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr21	46202955	46202956	chr21:46202956:T:C	rs2839142	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	6.315895896626334	-0.5915693402976705	GCGATTAAGTCACCATTG
chr21	46285322	46285323	chr21:46285323:T:C	rs17176131	T	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr21	46454232	46454233	chr21:46454233:G:A	rs182924265	G	A	g	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr21	46603624	46603625	chr21:46603625:G:A	rs2243462	G	A	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr22	10716271	10716272	chr22:10716272:G:C	rs1217593826	G	C	.	Msx3.mouse_homeodomain_1	4	1	-	6.098103321118114	6.538659749037548	CCAACTAAACAGTAATCA
chr22	10775959	10775960	chr22:10775960:G:A	rs1437908484	G	A	.	Msx3.mouse_homeodomain_1	11	1	-	9.815828599055049	8.10559818007134	ACAATTAAATTCATATTA
chr22	11035108	11035109	chr22:11035109:T:C	rs879198535	T	C	.	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr22	12280262	12280263	chr22:12280263:A:G	rs1295703652	A	G	.	Msx3.mouse_homeodomain_1	0	1	+	6.86628686096215	7.974796416126894	ACAATTTGAGCCCAATTT
chr22	12584525	12584526	chr22:12584526:A:G	rs1175604867	A	G	.	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr22	15690937	15690938	chr22:15690938:A:G	rs149701308	A	G	.	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr22	16592703	16592704	chr22:16592704:C:T	rs528109917	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr22	16835422	16835423	chr22:16835423:T:C	rs17435801	T	C	.	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr22	16915721	16915722	chr22:16915722:C:T	rs7288841	C	T	.	Msx3.mouse_homeodomain_1	13	1	-	9.349740948268835	11.407015127175029	ATGATTATGATGCGATTA
chr22	17228992	17228993	chr22:17228993:G:A	rs5994214	G	A	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr22	17285669	17285670	chr22:17285670:G:A	rs113326307	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	7.696522161411857	6.251399497845375	TTTATTGGGAGCCAATTA
chr22	17319133	17319134	chr22:17319134:G:A	rs138991461	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr22	17492808	17492809	chr22:17492809:A:G	rs10483094	A	G	G	Msx3.mouse_homeodomain_1	3	1	+	7.310971479867303	3.341540503498424	AGAATTACTAAGTCATTA
chr22	17520128	17520129	chr22:17520129:G:A	rs174306	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr22	17607087	17607088	chr22:17607088:C:T	rs9604771	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr22	17641565	17641566	chr22:17641566:G:A	rs12167771	G	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr22	17656112	17656113	chr22:17656113:C:T	rs2587071	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr22	17672111	17672112	chr22:17672112:A:G	rs2535691	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr22	17776470	17776471	chr22:17776471:T:C	rs12627897	T	C	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr22	17919245	17919246	chr22:17919246:T:C	rs28406897	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	10.47685279967667	11.585362354841415	ACAAGTAAAAAACAATTA
chr22	18034230	18034231	chr22:18034231:C:T	rs390005	C	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr22	18150288	18150289	chr22:18150289:G:T	rs9617681	G	T	.	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr22	18150332	18150333	chr22:18150333:A:G	rs9618219	A	G	.	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr22	18582865	18582866	chr22:18582866:A:T	rs77582205	A	T	a	Msx3.mouse_homeodomain_1	15	1	-	11.361256651143494	5.282343231785637	GCAATTAAAAAAAAATTT
chr22	18980068	18980069	chr22:18980069:G:C	rs17208178	G	C	G	Msx3.mouse_homeodomain_1	11	1	-	6.2839194166715915	6.198453875961328	GGGATTAAGTCCTGATTA
chr22	19647142	19647143	chr22:19647143:C:G	rs7291613	C	G	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr22	19691543	19691544	chr22:19691544:A:G	rs5992462	A	G	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr22	19691680	19691681	chr22:19691681:T:C	rs774565154	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	8.454965963894242	7.345150426570648	GCGATTAAAATCGACTTA
chr22	19692465	19692466	chr22:19692466:A:C	rs11704304	A	C	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr22	19741837	19741838	chr22:19741838:A:G	rs11089305	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr22	19824196	19824197	chr22:19824197:C:T	rs9606166	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.4724328170151795	5.76220239803147	TTATTTGAAAACTAATTA
chr22	19827685	19827686	chr22:19827686:T:G	rs1468090	T	G	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr22	19865755	19865756	chr22:19865756:A:G	rs7286636	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr22	20596276	20596277	chr22:20596277:C:T	rs554733	C	T	.	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr22	20706578	20706579	chr22:20706579:G:A	rs182965802	G	A	-	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr22	20775270	20775271	chr22:20775271:T:C	rs165680	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	8.640788639462087	7.634239306616879	GTGATTAAATCCAGATTA
chr22	20920049	20920050	chr22:20920050:G:A	rs929202	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr22	20978774	20978775	chr22:20978775:G:C	rs16988949	G	C	G	Msx3.mouse_homeodomain_1	11	1	-	9.968587182884718	9.883121642174459	TCAGTTAAATCCTAATTA
chr22	21567545	21567546	chr22:21567546:T:C	rs1328228884	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr22	21899798	21899799	chr22:21899799:G:A	rs79497006	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr22	22126813	22126814	chr22:22126814:G:A	rs77913924	G	A	.	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr22	22208762	22208763	chr22:22208763:T:C	rs738873	T	C	.	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr22	22208782	22208783	chr22:22208783:A:T	rs181027050	A	T	.	Msx3.mouse_homeodomain_1	6	1	+	8.284290571763572	4.692008364651054	GCAATTAGAGTCCATTTT
chr22	22239232	22239233	chr22:22239233:C:A	rs77737107	C	A	.	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr22	22405809	22405810	chr22:22405810:G:A	rs62225020	G	A	.	Msx3.mouse_homeodomain_1	13	1	-	6.158834246566637	4.8606188402040456	ACAATCAAATTCCCATGA
chr22	22463032	22463033	chr22:22463033:G:A	rs78068310	G	A	N	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr22	22520311	22520312	chr22:22520312:A:T	rs4822092	A	T	a	Msx3.mouse_homeodomain_1	8	1	+	6.232672292981058	5.195401819823509	CCCCTTATAGCCCAATCA
chr22	22569762	22569763	chr22:22569763:A:T	rs6002778	A	T	g	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr22	22702526	22702527	chr22:22702527:T:C	rs5759379	T	C	.	Msx3.mouse_homeodomain_1	7	1	+	6.164356442751777	5.83441549003568	ACACTTCTATAGCAATTG
chr22	22709857	22709858	chr22:22709858:C:T	rs143754634	C	T	.	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr22	22760520	22760521	chr22:22760521:C:T	rs5759449	C	T	.	Msx3.mouse_homeodomain_1	12	1	+	7.611068139188476	6.165945475621994	ACAATCACATAACATTTA
chr22	22813406	22813407	chr22:22813407:G:A	rs149171927	G	A	.	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr22	22937276	22937277	chr22:22937277:G:C	rs17514179	G	C	.	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	22981967	22981968	chr22:22981968:C:T	rs2096534	C	T	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr22	23014778	23014779	chr22:23014779:G:A	rs5996447	G	A	c	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr22	23029514	23029515	chr22:23029515:T:C	rs185250766	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.341700386210504	3.372269409841626	CCAATAATTTGACAATCA
chr22	23147025	23147026	chr22:23147026:C:G	rs115667459	C	G	C	Msx3.mouse_homeodomain_1	11	1	-	6.1095243194971145	6.194989860207378	CCAATATGAGAGGAATTA
chr22	23274167	23274168	chr22:23274168:C:T	rs3788358	C	T	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr22	23274181	23274182	chr22:23274182:A:G	rs369007084	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.233884821281766	4.264453844912886	TTCATTAAAAAACAGTTA
chr22	23431162	23431163	chr22:23431163:G:T	rs4820554	G	T	-	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr22	23511721	23511722	chr22:23511722:C:A	rs5996566	C	A	N	Msx3.mouse_homeodomain_1	8	1	+	5.550743637412661	6.470310462045216	CACATTAACGGCCAGTTA
chr22	23660936	23660937	chr22:23660937:T:A	rs131436	T	A	.	Msx3.mouse_homeodomain_1	14	1	-	9.322471526128018	4.995711174778462	TTAATTAAAAAAAAATTT
chr22	23909578	23909579	chr22:23909579:C:A	rs3884794	C	A	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr22	24069721	24069722	chr22:24069722:G:A	rs2051198	G	A	g	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr22	24170398	24170399	chr22:24170399:A:G	rs144103974	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	5.928705177234641	7.373827840801124	GCACTGAGCCTCTAATTA
chr22	24894941	24894942	chr22:24894942:A:G	rs866766266	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr22	24894960	24894961	chr22:24894961:C:T	rs56368150	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	10.330835619717682	8.885712956151199	TCAATTACAGAGCAGTTA
chr22	25098489	25098490	chr22:25098490:G:A	rs5760850	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr22	25127908	25127909	chr22:25127909:C:T	rs5760866	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr22	25265757	25265758	chr22:25265758:G:A	rs9612921	G	A	g	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr22	25269116	25269117	chr22:25269117:G:C	rs2330968	G	C	g	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr22	25740825	25740826	chr22:25740826:A:G	rs8136122	A	G	a	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr22	25806630	25806631	chr22:25806631:C:G	rs9620561	C	G	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr22	25835720	25835721	chr22:25835721:G:A	rs2072014	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr22	25909905	25909906	chr22:25909906:G:T	rs2247902	G	T	T	Msx3.mouse_homeodomain_1	1	1	-	7.0587925255638515	4.358503148623388	GCAATTAGTTGCTGTTTA
chr22	25965360	25965361	chr22:25965361:G:A	rs1894677	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr22	25998620	25998621	chr22:25998621:C:T	rs8139267	C	T	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr22	26029332	26029333	chr22:26029333:T:C	rs11913497	T	C	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr22	26029375	26029376	chr22:26029376:T:C	rs56338632	T	C	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr22	26135050	26135051	chr22:26135051:C:T	rs143511167	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr22	26234488	26234489	chr22:26234489:C:T	rs11703706	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr22	26234489	26234490	chr22:26234490:G:A	rs926920	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr22	26255799	26255800	chr22:26255800:T:C	rs737792	T	C	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr22	26268086	26268087	chr22:26268087:A:C	rs137179	A	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr22	26320003	26320004	chr22:26320004:T:C	rs1555056	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr22	26374664	26374665	chr22:26374665:T:C	rs731275	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	6.618266858621581	4.560992679715383	CCCATTAACCACCACTTT
chr22	26405320	26405321	chr22:26405321:G:A	rs6005042	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr22	26725492	26725493	chr22:26725493:T:C	rs73165467	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr22	26741171	26741172	chr22:26741172:T:C	rs763105	T	C	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr22	26847531	26847532	chr22:26847532:C:T	rs112029463	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr22	26853388	26853389	chr22:26853389:G:A	rs136541	G	A	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr22	26903402	26903403	chr22:26903403:G:C	rs9306429	G	C	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr22	27021109	27021110	chr22:27021110:C:A	rs557032050	C	A	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr22	27045416	27045417	chr22:27045417:C:A	rs3091387	C	A	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr22	27063759	27063760	chr22:27063760:G:C	rs2331366	G	C	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr22	27108198	27108199	chr22:27108199:G:C	rs6005296	G	C	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr22	27131144	27131145	chr22:27131145:C:A	rs134955	C	A	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr22	27237555	27237556	chr22:27237556:A:G	rs479694	A	G	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr22	27328854	27328855	chr22:27328855:C:A	rs73153970	C	A	A	Msx3.mouse_homeodomain_1	13	1	+	8.19158916460724	11.075782221084616	GCAATTATTGAGCCTTTA
chr22	27392533	27392534	chr22:27392534:A:C	rs76963640	A	C	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr22	27482895	27482896	chr22:27482896:C:T	rs1884132	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr22	27568419	27568420	chr22:27568420:G:A	rs73160578	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr22	27568427	27568428	chr22:27568428:G:A	rs11090499	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr22	27568464	27568465	chr22:27568465:A:G	rs4822912	A	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr22	27839098	27839099	chr22:27839099:C:T	rs6005657	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr22	27868092	27868093	chr22:27868093:C:T	rs5752651	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr22	28504012	28504013	chr22:28504013:T:C	rs5762664	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr22	28712706	28712707	chr22:28712707:G:A	rs17882704	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr22	28819553	28819554	chr22:28819554:G:A	rs763073	G	A	A	Msx3.mouse_homeodomain_1	9	1	-	10.023457814761358	10.915546846832608	CTAATCAAACGCAAATTA
chr22	28904317	28904318	chr22:28904318:C:T	rs16986825	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr22	28943678	28943679	chr22:28943679:G:C	rs114433414	G	C	-	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr22	28954381	28954382	chr22:28954382:T:G	rs117793885	T	G	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr22	29084753	29084754	chr22:29084754:A:G	rs134630	A	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr22	29135225	29135226	chr22:29135226:T:C	rs9306462	T	C	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr22	29176296	29176297	chr22:29176297:G:A	rs73882490	G	A	a	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr22	29250105	29250106	chr22:29250106:A:G	rs4820800	A	G	a	Msx3.mouse_homeodomain_1	4	1	-	8.98640160934231	2.887855929473177	CTAATTGAAAACAAATTT
chr22	29451732	29451733	chr22:29451733:C:A	rs13053817	C	A	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr22	29601021	29601022	chr22:29601022:C:T	rs9613999	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr22	29604104	29604105	chr22:29604105:A:G	rs372279458	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	4.757353453543527	-2.1501117833804777	CCGGTTACCTCGCAATTG
chr22	29678495	29678496	chr22:29678496:G:A	rs56188151	G	A	G	Msx3.mouse_homeodomain_1	3	1	-	6.967783384314045	4.720607408698854	GTCCTTAATTTCTGATTA
chr22	29751048	29751049	chr22:29751049:T:C	rs140126	T	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr22	29821837	29821838	chr22:29821838:A:T	rs2057882	A	T	a	Msx3.mouse_homeodomain_1	15	1	-	7.729556284240564	1.650642864882708	CGAATTAAAAAAAAATTT
chr22	30235861	30235862	chr22:30235862:G:A	rs141867990	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	30235909	30235910	chr22:30235910:G:A	rs117863372	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr22	30244224	30244225	chr22:30244225:G:A	rs737921	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.672592157194753	8.22746949362827	GCACTCACATTACAATTA
chr22	30536685	30536686	chr22:30536686:T:C	rs1107844	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.860653498593906	3.8912225222250263	CCAATTAGGTAGGTATTA
chr22	30537612	30537613	chr22:30537613:G:C	rs764217	G	C	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	30690292	30690293	chr22:30690293:C:T	rs13055538	C	T	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr22	30783147	30783148	chr22:30783148:T:C	rs73154647	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr22	30817109	30817110	chr22:30817110:C:T	rs136232	C	T	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr22	31038716	31038717	chr22:31038717:G:T	rs12484162	G	T	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr22	31650712	31650713	chr22:31650713:C:A	rs187126874	C	A	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr22	31752704	31752705	chr22:31752705:C:T	rs144008471	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	31869916	31869917	chr22:31869917:T:G	rs1012068	T	G	G	Msx3.mouse_homeodomain_1	14	1	+	6.227399381758827	5.966065514085233	GCAATCAGGGGCTATTTA
chr22	31991584	31991585	chr22:31991585:C:T	rs17682385	C	T	C	Msx3.mouse_homeodomain_1	13	1	+	6.5018575352175825	5.203642128854992	TCCCTTAGATGGCCATTA
chr22	32318351	32318352	chr22:32318352:C:G	rs7285187	C	G	c	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr22	32355256	32355257	chr22:32355257:T:G	rs10427862	T	G	c	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr22	32589029	32589030	chr22:32589030:T:C	rs78360543	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	11.095055298378174	7.125624322009295	TTAATTACATGCAAATTA
chr22	32599764	32599765	chr22:32599765:T:C	rs5998551	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr22	32687866	32687867	chr22:32687867:C:A	rs4821086	C	A	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr22	32745913	32745914	chr22:32745914:G:C	rs138427383	G	C	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr22	32780847	32780848	chr22:32780848:A:C	rs5754282	A	C	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr22	32852067	32852068	chr22:32852068:A:T	rs2283884	A	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr22	33219856	33219857	chr22:33219857:A:G	rs137462	A	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr22	33424269	33424270	chr22:33424270:G:T	rs8138344	G	T	T	Msx3.mouse_homeodomain_1	9	1	-	9.006861845571642	10.313092149515974	GCCATTATCCAACAATTG
chr22	33513336	33513337	chr22:33513337:C:G	rs2267223	C	G	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr22	33536394	33536395	chr22:33536395:T:C	rs5754594	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr22	33577621	33577622	chr22:33577622:A:C	rs142296623	A	C	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr22	33713018	33713019	chr22:33713019:G:A	rs4821176	G	A	A	Msx3.mouse_homeodomain_1	0	1	-	6.474490941418184	5.650900197158004	CCCATAAAGGGGCAATTT
chr22	33781708	33781709	chr22:33781709:C:T	rs187323223	C	T	C	Msx3.mouse_homeodomain_1	14	1	+	7.649143112639712	6.883361799544345	ATACTTATCTAGCACTTA
chr22	33852325	33852326	chr22:33852326:C:A	rs5749682	C	A	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr22	34429510	34429511	chr22:34429511:A:G	rs73415254	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	8.429842848131166	5.9877656211996095	TCAATCATTAAGTCATTA
chr22	34432403	34432404	chr22:34432404:G:A	rs147949138	G	A	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr22	34434725	34434726	chr22:34434726:G:T	chr22:34434726:G:T	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	8.308076058111928	5.796767298343104	CCAATTAGCTCACAATTC
chr22	34914510	34914511	chr22:34914511:A:C	rs2157214	A	C	A	Msx3.mouse_homeodomain_1	8	1	+	5.574815378553041	4.655248553920488	GGAAATACACAGCAATTA
chr22	35033029	35033030	chr22:35033030:G:A	rs547232202	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr22	35140869	35140870	chr22:35140870:G:A	rs545353031	G	A	G	Msx3.mouse_homeodomain_1	10	1	-	8.208501313532647	9.252473613406362	GCAATTTACACGCTATTA
chr22	35157667	35157668	chr22:35157668:G:A	rs13057108	G	A	g	Msx3.mouse_homeodomain_1	0	1	+	9.776925522428527	8.66841596726378	GTAATCACATTGCAATCA
chr22	35172678	35172679	chr22:35172679:C:T	rs7291553	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr22	35275878	35275879	chr22:35275879:A:C	rs78467305	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	7.679002187232293	2.0210129352825956	ATTATTAGTAGCAAATTA
chr22	35398415	35398416	chr22:35398416:A:G	rs4821398	A	G	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr22	35458739	35458740	chr22:35458740:C:A	rs139723318	C	A	C	Msx3.mouse_homeodomain_1	11	1	+	7.338335960775663	6.055919394889989	TCAATTATACTCAGATTG
chr22	35973463	35973464	chr22:35973464:C:T	rs6000049	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr22	36161892	36161893	chr22:36161893:G:A	rs132658	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr22	36245411	36245412	chr22:36245412:G:A	rs9610466	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr22	36363589	36363590	chr22:36363590:T:C	rs143005031	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr22	36368965	36368966	chr22:36368966:G:A	rs77072154	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr22	36409136	36409137	chr22:36409137:C:G	rs77444868	C	G	C	Msx3.mouse_homeodomain_1	9	1	-	5.863296854877993	5.497610543319808	GTACTTCCAGGACAATTA
chr22	36413273	36413274	chr22:36413274:G:A	rs113563158	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr22	36546501	36546502	chr22:36546502:C:T	rs750966376	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	36622786	36622787	chr22:36622787:C:T	rs7293217	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr22	36622814	36622815	chr22:36622815:T:C	rs7285253	T	C	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr22	36944548	36944549	chr22:36944549:G:T	rs11089813	G	T	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr22	37091646	37091647	chr22:37091647:C:A	rs5756509	C	A	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr22	37189197	37189198	chr22:37189198:G:A	rs112326866	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr22	37432446	37432447	chr22:37432447:G:A	rs12157374	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr22	37638745	37638746	chr22:37638746:A:C	rs4820292	A	C	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr22	38143428	38143429	chr22:38143429:A:C	rs117600608	A	C	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr22	38162451	38162452	chr22:38162452:A:G	rs6001034	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr22	38699647	38699648	chr22:38699648:T:C	rs149593440	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr22	38705735	38705736	chr22:38705736:C:G	rs200105626	C	G	C	Msx3.mouse_homeodomain_1	0	1	+	7.437028466392566	7.804379976267179	CTCATTAATTATTCATTA
chr22	38933774	38933775	chr22:38933775:C:T	rs5757380	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr22	39117712	39117713	chr22:39117713:G:T	rs115291057	G	T	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr22	39118063	39118064	chr22:39118064:C:T	rs369368554	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr22	39151195	39151196	chr22:39151196:G:A	rs139404	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr22	39172920	39172921	chr22:39172921:T:C	rs7290094	T	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr22	39265081	39265082	chr22:39265082:A:G	rs17000920	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr22	39289826	39289827	chr22:39289827:G:A	rs79290	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr22	39318698	39318699	chr22:39318699:C:T	rs1569498	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr22	39318732	39318733	chr22:39318733:A:G	rs9611144	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	6.581293326926885	4.013133729743683	CGAATAAAAAGGTCATTA
chr22	39610018	39610019	chr22:39610019:G:T	rs3788566	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	7.471612170573784	5.84684729230034	GGAATCAGAAGGCAATCA
chr22	39610029	39610030	chr22:39610030:G:T	rs3788567	G	T	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr22	39934726	39934727	chr22:39934727:G:A	rs755644869	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr22	40024781	40024782	chr22:40024782:C:G	rs8139715	C	G	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr22	40169537	40169538	chr22:40169538:A:G	rs34323392	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr22	40203874	40203875	chr22:40203875:C:T	rs8137796	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr22	40385059	40385060	chr22:40385060:A:G	rs77662200	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr22	40414846	40414847	chr22:40414847:A:G	rs73887805	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	7.5050948690056005	2.9170006499824503	ACATTTAAAAAATGATTA
chr22	40855660	40855661	chr22:40855661:A:G	chr22:40855661:A:G	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr22	40955666	40955667	chr22:40955667:G:A	rs915035219	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr22	41128935	41128936	chr22:41128936:C:T	rs9623332	C	T	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr22	41283974	41283975	chr22:41283975:G:A	rs118089244	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr22	41286700	41286701	chr22:41286701:G:A	rs185376211	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr22	41366865	41366866	chr22:41366866:G:A	rs5751085	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr22	41382612	41382613	chr22:41382613:T:C	rs73176684	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	5.863435121413034	3.4704493789025324	CCCATTATTTTCCAAGTA
chr22	41439447	41439448	chr22:41439448:G:A	rs2011790	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr22	41539357	41539358	chr22:41539358:A:G	rs12483998	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr22	41543734	41543735	chr22:41543735:A:G	rs12484228	A	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr22	41699272	41699273	chr22:41699273:C:T	rs74621938	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr22	42074876	42074877	chr22:42074877:A:G	chr22:42074877:A:G	A	G	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr22	42221404	42221405	chr22:42221405:T:C	rs5751244	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	8.220733555269668	5.095784401675813	ACAATTAAACACTCCTTA
chr22	42416464	42416465	chr22:42416465:A:G	rs735537	A	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr22	42416465	42416466	chr22:42416466:T:G	rs760723	T	G	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	42935533	42935534	chr22:42935534:C:T	rs118112833	C	T	C	Msx3.mouse_homeodomain_1	3	1	+	6.531760159010207	4.284584183395017	GTACTTAGGCAACACTTA
chr22	42940224	42940225	chr22:42940225:A:T	rs738390	A	T	A	Msx3.mouse_homeodomain_1	16	1	-	7.824190356373143	3.9393524288500847	CTAATTACTGAGTAGTTA
chr22	42954370	42954371	chr22:42954371:C:G	rs2056946	C	G	C	Msx3.mouse_homeodomain_1	3	1	+	8.418401829679247	7.32914521784327	ACACTTAAAAAGTAGTTA
chr22	42959642	42959643	chr22:42959643:T:C	rs561126106	T	C	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr22	42962333	42962334	chr22:42962334:T:C	rs78225773	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr22	43164054	43164055	chr22:43164055:A:G	rs183728545	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr22	43203504	43203505	chr22:43203505:G:A	rs114922639	G	A	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr22	43204274	43204275	chr22:43204275:T:G	rs11703432	T	G	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr22	43554972	43554973	chr22:43554973:T:G	rs34955597	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	6.878196575237527	2.2913399941110186	CCCATTACCATGCCATCA
chr22	43587881	43587882	chr22:43587882:G:A	rs5764598	G	A	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr22	43643453	43643454	chr22:43643454:C:T	rs146503693	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr22	43683557	43683558	chr22:43683558:A:T	rs2071716	A	T	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr22	43745392	43745393	chr22:43745393:C:T	rs10483220	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr22	43899222	43899223	chr22:43899223:A:G	rs6006452	A	G	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr22	43951369	43951370	chr22:43951370:C:T	rs5764045	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr22	44003070	44003071	chr22:44003071:T:C	rs73178450	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr22	44446630	44446631	chr22:44446631:A:G	rs133794	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	6.01727938538734	1.4291851663641908	GCAATTAAGGTGACATTC
chr22	44456184	44456185	chr22:44456185:A:G	rs118055500	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.1265678365251715	1.0280221566560397	AAGATTAAAAACCAATGA
chr22	44839422	44839423	chr22:44839423:C:T	rs2285117	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	9.30755844020553	10.384149611142004	CCACTTAAACGGTGATTA
chr22	44929093	44929094	chr22:44929094:G:A	rs136686	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	6.650875078331281	5.827284334071103	CAACTCGAGAAGCAATTA
chr22	45155189	45155190	chr22:45155190:T:C	rs132829	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr22	45155215	45155216	chr22:45155216:A:C	rs114542844	A	C	A	Msx3.mouse_homeodomain_1	0	1	-	7.858881533940635	9.049823788075425	TTAATTGAATACTATTTA
chr22	45318607	45318608	chr22:45318608:T:C	rs226492	T	C	t	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr22	45322745	45322746	chr22:45322746:G:A	rs7286605	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	6.012789751270714	4.904280196105969	GCGATAAAGAGGTACTTA
chr22	45474233	45474234	chr22:45474234:G:A	rs557255298	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr22	45534849	45534850	chr22:45534850:G:A	rs114388069	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr22	45534883	45534884	chr22:45534884:A:G	rs113987114	A	G	A	Msx3.mouse_homeodomain_1	0	1	-	8.579271036455033	9.40286178071521	TAGATCATAAAGCAATTA
chr22	45612116	45612117	chr22:45612117:C:T	rs4823229	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr22	45717830	45717831	chr22:45717831:G:C	rs138155	G	C	C	Msx3.mouse_homeodomain_1	1	1	-	9.009261849603025	5.744912992574709	ACTATTATTAATTAATTA
chr22	46166177	46166178	chr22:46166178:A:G	rs11913649	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	6.0352667430679565	7.480389406634438	GCAATTGGCCAGTGATCA
chr22	46195708	46195709	chr22:46195709:G:C	rs1417514943	G	C	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr22	46501698	46501699	chr22:46501699:G:T	rs6007921	G	T	T	Msx3.mouse_homeodomain_1	11	1	-	7.002271145236812	5.719854579351139	GCATTTAAAAACAAATAA
chr22	46556778	46556779	chr22:46556779:G:A	rs1987140	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	46591240	46591241	chr22:46591241:G:A	rs5769002	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr22	46683645	46683646	chr22:46683646:A:G	rs12160472	A	G	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr22	46799763	46799764	chr22:46799764:A:G	rs5769164	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	6.440977797505719	-0.4664874394182854	TCAATCAGAATCTCATTG
chr22	46799783	46799784	chr22:46799784:T:G	rs5769165	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr22	46849061	46849062	chr22:46849062:A:G	rs6008988	A	G	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr22	46872009	46872010	chr22:46872010:G:A	rs131860	G	A	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr22	46913580	46913581	chr22:46913581:A:G	rs73478585	A	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr22	46929433	46929434	chr22:46929434:C:A	rs2064166	C	A	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr22	46936562	46936563	chr22:46936563:G:A	rs998084356	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr22	47045527	47045528	chr22:47045528:T:C	rs131900	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	6.195225964902727	5.2546819725165825	GTCATTACCATTCAATTC
chr22	47071118	47071119	chr22:47071119:G:A	rs5769349	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	8.44637412244862	7.6735339457067235	CTCATTAAAAAGAAATAA
chr22	47095118	47095119	chr22:47095119:T:C	rs5767482	T	C	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr22	47166084	47166085	chr22:47166085:T:A	rs561083366	T	A	T	Msx3.mouse_homeodomain_1	8	1	-	6.070600271918276	5.033329798760727	CCACTTAAAAGCTACTCA
chr22	47329138	47329139	chr22:47329139:C:T	rs79265174	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr22	47432443	47432444	chr22:47432444:G:A	rs57557576	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	47539615	47539616	chr22:47539616:T:C	rs5767784	T	C	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	47543317	47543318	chr22:47543318:C:T	rs1276768375	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr22	47614675	47614676	chr22:47614676:C:A	rs117834824	C	A	C	Msx3.mouse_homeodomain_1	2	1	-	5.564839735001815	4.926280744726272	GCGCTTAGAGAGCGATTT
chr22	47623727	47623728	chr22:47623728:C:A	rs738715	C	A	a	Msx3.mouse_homeodomain_1	13	1	+	7.1746676691535916	10.058860725630968	GCAATTTGTAAATCATTA
chr22	47789132	47789133	chr22:47789133:A:G	rs9615637	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr22	47806235	47806236	chr22:47806236:A:T	rs9615646	A	T	A	Msx3.mouse_homeodomain_1	17	1	+	8.520633020521277	5.149846824642479	TTAATTAATAGATAATCA
chr22	47904510	47904511	chr22:47904511:C:A	rs8140789	C	A	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr22	48229531	48229532	chr22:48229532:C:T	rs149470034	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr22	48414306	48414307	chr22:48414307:T:C	rs2879246	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr22	48459732	48459733	chr22:48459733:A:G	rs5768644	A	G	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr22	48478106	48478107	chr22:48478107:T:C	rs5768657	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr22	48521091	48521092	chr22:48521092:C:T	rs148842211	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr22	48605799	48605800	chr22:48605800:C:T	rs73889151	C	T	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr22	48649850	48649851	chr22:48649851:C:G	rs2878990	C	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr22	48906197	48906198	chr22:48906198:T:C	rs62225874	T	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr22	48939925	48939926	chr22:48939926:A:G	rs12170462	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr22	48939944	48939945	chr22:48939945:A:G	rs78487674	A	G	a	Msx3.mouse_homeodomain_1	8	1	+	8.699813078146335	7.693263745301123	GTAATAAGAAGGCAATAA
chr22	48939945	48939946	chr22:48939946:A:C	rs75838299	A	C	A	Msx3.mouse_homeodomain_1	9	1	+	8.699813078146335	7.3935827742020015	GTAATAAGAAGGCAATAA
chr22	49013831	49013832	chr22:49013832:G:A	rs738610	G	A	A	Msx3.mouse_homeodomain_1	11	1	-	10.670024318977998	8.959793899994288	TCAATTAATAACTTATTA
chr22	49232665	49232666	chr22:49232666:A:T	rs2858618	A	T	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr22	49239036	49239037	chr22:49239037:T:C	rs762944	T	C	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr22	49417080	49417081	chr22:49417081:A:C	rs41280545	A	C	a	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr22	49551206	49551207	chr22:49551207:T:C	rs6009759	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr22	49864530	49864531	chr22:49864531:T:G	rs5770727	T	G	T	Msx3.mouse_homeodomain_1	16	1	+	7.000223071481622	1.926690295372292	GCACTTAATACCTGATTG
chr22	49903786	49903787	chr22:49903787:T:C	rs1321	T	C	C	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr22	49976338	49976339	chr22:49976339:C:G	rs1019689682	C	G	t	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr22	49976339	49976340	chr22:49976340:G:A	chr22:49976340:G:A	G	A	c	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr22	50067154	50067155	chr22:50067155:A:G	rs5771348	A	G	A	Msx3.mouse_homeodomain_1	10	1	-	5.780493327378504	4.736521027504789	CCACTCCTACTCCAATTA
chr22	50091032	50091033	chr22:50091033:A:G	rs8139235	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr22	50091554	50091555	chr22:50091555:G:T	rs9617065	G	T	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	74956	74957	chr3:74957:T:C	rs4685768	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr3	100579	100580	chr3:100580:T:C	rs9790033	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr3	218173	218174	chr3:218174:A:G	rs74683073	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr3	973625	973626	chr3:973626:G:A	rs114663153	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	1469176	1469177	chr3:1469177:C:G	rs9832599	C	G	C	Msx3.mouse_homeodomain_1	0	1	-	8.932809889729606	8.565458379854993	GCAATTAAAAACTACTTC
chr3	1494582	1494583	chr3:1494583:A:T	rs34314788	A	T	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr3	1494588	1494589	chr3:1494589:G:T	rs35614590	G	T	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr3	1497234	1497235	chr3:1497235:A:G	rs146147606	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr3	2207227	2207228	chr3:2207228:T:C	rs1153540	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	10.031423880039714	9.139334847968463	ACAATAATATTGAAATTA
chr3	2250234	2250235	chr3:2250235:C:G	rs1357499	C	G	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	2567928	2567929	chr3:2567929:G:A	rs11710931	G	A	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr3	2567972	2567973	chr3:2567973:C:T	rs11718965	C	T	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr3	2851424	2851425	chr3:2851425:G:C	rs4365614	G	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr3	2851445	2851446	chr3:2851446:A:G	rs7645324	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.41879193571447	3.8306977166913185	GTTATCATAGATCAATTA
chr3	3200615	3200616	chr3:3200616:A:C	rs959312	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	8.249308950682977	2.591319698733277	GCATTTAAAATGTAATCA
chr3	3350978	3350979	chr3:3350979:T:G	rs57880031	T	G	T	Msx3.mouse_homeodomain_1	16	1	+	8.107903703721536	3.0343709276122093	CCAATTAGATTACTATTG
chr3	3531425	3531426	chr3:3531426:T:G	rs1508737	T	G	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr3	3538764	3538765	chr3:3538765:T:C	rs11129648	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr3	3587939	3587940	chr3:3587940:A:C	rs3936556	A	C	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr3	3927285	3927286	chr3:3927286:A:G	rs1485205	A	G	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr3	4426913	4426914	chr3:4426914:C:G	chr3:4426914:C:G	C	G	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	4426913	4426914	chr3:4426914:C:T	rs2322683	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	4426917	4426918	chr3:4426918:C:G	rs1327234212	C	G	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr3	4504551	4504552	chr3:4504552:C:T	rs145368913	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr3	4548158	4548159	chr3:4548159:G:C	rs112311153	G	C	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr3	4565448	4565449	chr3:4565449:C:T	rs4685765	C	T	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr3	4565546	4565547	chr3:4565547:A:G	rs4684421	A	G	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	4719636	4719637	chr3:4719637:T:G	rs146516369	T	G	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr3	5125932	5125933	chr3:5125933:G:A	rs4499578	G	A	A	Msx3.mouse_homeodomain_1	1	1	-	7.742927183098151	6.895084312217466	CCAATTACACATCCATCA
chr3	5656957	5656958	chr3:5656958:A:T	rs1452715	A	T	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr3	5785103	5785104	chr3:5785104:A:G	rs11710225	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	5797714	5797715	chr3:5797715:T:C	rs6784744	T	C	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr3	5797716	5797717	chr3:5797717:A:G	rs6782097	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr3	5889673	5889674	chr3:5889674:A:C	rs73111807	A	C	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr3	5890196	5890197	chr3:5890197:C:T	rs6790270	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr3	6097252	6097253	chr3:6097253:G:C	rs62245996	G	C	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	6124283	6124284	chr3:6124284:C:T	rs952236710	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	10.146072815341217	11.190045115214932	CTATTTAAATCGCAATTA
chr3	6675816	6675817	chr3:6675817:T:C	rs349902	T	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr3	8470981	8470982	chr3:8470982:G:A	rs9864415	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	8665870	8665871	chr3:8665871:T:C	rs62244197	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	7.139872028038634	0.2324067911146277	GCCATTAGAACACAATGA
chr3	8741311	8741312	chr3:8741312:T:C	rs237878	T	C	C	Msx3.mouse_homeodomain_1	10	1	+	9.306560197123442	8.262587897249727	TCAATAAACATAAAATTA
chr3	8808912	8808913	chr3:8808913:G:A	rs1643025	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr3	8962742	8962743	chr3:8962743:C:T	rs618784	C	T	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr3	8991212	8991213	chr3:8991213:T:A	rs583509	T	A	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr3	9169574	9169575	chr3:9169575:A:G	rs1154382	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	9231511	9231512	chr3:9231512:T:C	rs9853725	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	9246860	9246861	chr3:9246861:T:C	rs2137216	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr3	9419397	9419398	chr3:9419398:A:G	rs773801200	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	9.342705227547198	2.4352399906231934	TTTATTAAGTACCAATTG
chr3	10600503	10600504	chr3:10600504:A:T	rs192994067	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	9.283613810765917	5.10120534792595	TTAATTAAAATGGAATCA
chr3	10600521	10600522	chr3:10600522:A:T	rs78310196	A	T	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	10655556	10655557	chr3:10655557:A:G	rs9872155	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	7.859099723371947	3.2710055043487962	ATCATTGCCTGGCAATTA
chr3	10655560	10655561	chr3:10655561:G:A	rs79686943	G	A	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr3	11164635	11164636	chr3:11164636:C:T	rs17034063	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr3	11509526	11509527	chr3:11509527:A:G	rs2442794	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	11509564	11509565	chr3:11509565:C:T	rs143439724	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr3	11541217	11541218	chr3:11541218:T:C	rs191535347	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr3	11690801	11690802	chr3:11690802:A:C	rs6782324	A	C	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr3	11702649	11702650	chr3:11702650:T:A	rs13085285	T	A	A	Msx3.mouse_homeodomain_1	5	1	+	9.632301050705301	6.810899003548918	TAAATTAAATACCAGTTA
chr3	12156108	12156109	chr3:12156109:T:C	rs140931980	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.54439289141174	4.574961915042861	GCAATGAATGACCACTTA
chr3	12301478	12301479	chr3:12301479:T:C	chr3:12301479:T:C	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr3	12426113	12426114	chr3:12426114:A:G	rs4135356	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	12557860	12557861	chr3:12557861:G:A	rs74763449	G	A	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr3	12658255	12658256	chr3:12658256:G:A	rs9809842	G	A	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr3	12984398	12984399	chr3:12984399:G:A	rs360745	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	13465626	13465627	chr3:13465627:T:C	rs352386	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr3	14239369	14239370	chr3:14239370:G:T	rs4685090	G	T	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr3	14252768	14252769	chr3:14252769:T:C	rs72624497	T	C	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr3	14298321	14298322	chr3:14298322:G:T	rs149954744	G	T	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr3	14434401	14434402	chr3:14434402:A:G	rs930336	A	G	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr3	15218291	15218292	chr3:15218292:G:A	rs17040851	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr3	15331529	15331530	chr3:15331530:G:A	rs67626508	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr3	15331568	15331569	chr3:15331569:G:C	rs142349401	G	C	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	15348308	15348309	chr3:15348309:T:C	rs12637343	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr3	15606816	15606817	chr3:15606817:C:G	rs34356435	C	G	C	Msx3.mouse_homeodomain_1	5	1	+	9.449465623569179	7.399869588612515	GCAATCCAATTGTAATTA
chr3	15655401	15655402	chr3:15655402:G:T	rs2470532	G	T	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr3	16144038	16144039	chr3:16144039:A:G	rs10865741	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	11.30514633281862	8.788277704881544	CCAAGTAGAAAGCAATTA
chr3	16144063	16144064	chr3:16144064:A:G	rs11128781	A	G	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr3	16278221	16278222	chr3:16278222:A:G	rs6792868	A	G	A	Msx3.mouse_homeodomain_1	10	1	-	6.972595311311674	5.928623011437961	CTGATCAGAGTCCCATTA
chr3	16314270	16314271	chr3:16314271:A:G	rs6795350	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	16429588	16429589	chr3:16429589:T:G	rs7614860	T	G	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	16654074	16654075	chr3:16654075:G:T	rs141513596	G	T	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr3	17209321	17209322	chr3:17209322:A:C	rs76697713	A	C	A	Msx3.mouse_homeodomain_1	12	1	+	11.42847883627387	13.939787596042695	CTAATTAAAAACAAATTT
chr3	18732162	18732163	chr3:18732163:T:C	rs7638427	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.642724315803894	4.6732933394350145	TCAATTGAAGTCTAATTT
chr3	18772966	18772967	chr3:18772967:A:C	rs9833857	A	C	C	Msx3.mouse_homeodomain_1	6	1	+	8.339588661552455	4.094572855080294	AGAATCACTTTGCAATTA
chr3	20070694	20070695	chr3:20070695:C:G	rs114491517	C	G	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr3	20340456	20340457	chr3:20340457:A:G	rs116670058	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.792166961301775	2.2040727422786244	GCAGTCACCATCCAATTG
chr3	20340470	20340471	chr3:20340471:A:G	rs193187592	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	20822470	20822471	chr3:20822471:C:A	rs6769651	C	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr3	21735666	21735667	chr3:21735667:T:G	rs13072271	T	G	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	21747253	21747254	chr3:21747254:T:C	rs11706906	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	11.986482453341004	12.104186101865999	TTAATTAATATGCCATTA
chr3	21839461	21839462	chr3:21839462:A:C	rs17009729	A	C	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	21938408	21938409	chr3:21938409:A:C	rs1679245	A	C	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr3	21938409	21938410	chr3:21938410:G:A	rs6550634	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr3	22170864	22170865	chr3:22170865:A:C	rs2035850	A	C	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	22660714	22660715	chr3:22660715:G:T	rs9833118	G	T	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr3	22916466	22916467	chr3:22916467:G:C	rs698234	G	C	C	Msx3.mouse_homeodomain_1	1	1	-	6.159647381539137	2.8952985245108214	GCGATCAGAGGCTCATTA
chr3	23108816	23108817	chr3:23108817:C:A	rs9826624	C	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr3	23122257	23122258	chr3:23122258:T:C	rs4634143	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	7.370806360750836	0.46334112382683057	CTAATTACCATCAGATTG
chr3	23463695	23463696	chr3:23463696:G:C	rs34080387	G	C	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr3	23471564	23471565	chr3:23471565:T:G	rs17013320	T	G	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	23480725	23480726	chr3:23480726:A:C	rs2173461	A	C	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	23645188	23645189	chr3:23645189:T:C	rs62252607	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	11.232574220871765	7.263143244502889	TCAATTGAGAAGCAATTG
chr3	23743104	23743105	chr3:23743105:T:G	rs13084557	T	G	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	23805479	23805480	chr3:23805480:G:A	rs757585611	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	7.036956898783683	6.189114027902998	CCACCTAAAAAGCGATTA
chr3	23895831	23895832	chr3:23895832:T:C	rs73036705	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr3	23895863	23895864	chr3:23895864:G:A	rs6808677	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr3	23947045	23947046	chr3:23947046:T:C	rs13321439	T	C	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr3	23947064	23947065	chr3:23947065:T:A	rs13321440	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	12.464979169551093	9.094192973672294	GTAATCAAAACACAATTA
chr3	23999539	23999540	chr3:23999540:A:G	chr3:23999540:A:G	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr3	23999539	23999540	chr3:23999540:A:T	rs9825050	A	T	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr3	24423167	24423168	chr3:24423168:C:T	rs28369472	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.714083678638652	7.866240807757964	CCAATCAATGACCAATGA
chr3	24615286	24615287	chr3:24615287:T:G	rs10490833	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	10.557591839780818	7.6733987833034405	GCAATAAAAATACAATTT
chr3	24624805	24624806	chr3:24624806:T:C	rs10510547	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr3	24640620	24640621	chr3:24640621:T:A	rs17014989	T	A	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr3	24640636	24640637	chr3:24640637:C:T	rs143466622	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	7.90597814730197	8.912527480147176	CCAAGTAAGAGCAAATTA
chr3	25465538	25465539	chr3:25465539:A:G	rs6778350	A	G	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr3	25789304	25789305	chr3:25789305:A:G	chr3:25789305:A:G	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	26193705	26193706	chr3:26193706:G:A	rs2214144	G	A	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr3	26426111	26426112	chr3:26426112:C:G	rs9840797	C	G	C	Msx3.mouse_homeodomain_1	11	1	-	9.91374940615951	9.999214946869774	ATAATTAAATGGAAATTG
chr3	26458823	26458824	chr3:26458824:A:G	rs13080237	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	8.66486744829593	9.512710319176612	CTGATTAATAAGTACTTA
chr3	26712288	26712289	chr3:26712289:A:G	rs953919	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr3	27074813	27074814	chr3:27074814:C:T	rs17019306	C	T	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr3	27360193	27360194	chr3:27360194:A:G	rs12630194	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	27467467	27467468	chr3:27467468:C:G	rs1021498	C	G	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	27723799	27723800	chr3:27723800:G:T	rs138923284	G	T	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	27723803	27723804	chr3:27723804:A:T	rs751718	A	T	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr3	27723841	27723842	chr3:27723842:C:T	rs76646955	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr3	28211030	28211031	chr3:28211031:A:C	rs7638878	A	C	C	Msx3.mouse_homeodomain_1	17	1	+	7.405250914238786	2.8183943331122774	CAAATTATAAAGCAAGTA
chr3	28698691	28698692	chr3:28698692:A:G	rs572522559	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	11.802922515158766	7.214828296135617	CCAATAGAGAAGCAATTA
chr3	29213316	29213317	chr3:29213317:C:G	rs74917064	C	G	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr3	29214315	29214316	chr3:29214316:C:T	rs79698924	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	8.251574657251794	9.361390194575385	AAAATTAGTGTCCCATTA
chr3	29282957	29282958	chr3:29282958:A:C	chr3:29282958:A:C	A	C	A	Msx3.mouse_homeodomain_1	0	1	-	7.510096748978381	8.701039003113173	TGGATTACAAAGCAATTG
chr3	29408958	29408959	chr3:29408959:A:C	rs4146795	A	C	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr3	29830113	29830114	chr3:29830114:A:C	rs9847502	A	C	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	29835562	29835563	chr3:29835563:A:C	rs4680859	A	C	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr3	30343196	30343197	chr3:30343197:T:A	rs17623724	T	A	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr3	30355218	30355219	chr3:30355219:T:A	rs17025341	T	A	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr3	30421409	30421410	chr3:30421410:T:G	rs1587127	T	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr3	30529012	30529013	chr3:30529013:T:C	rs78326644	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr3	30544098	30544099	chr3:30544099:T:C	rs73823621	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr3	30545232	30545233	chr3:30545233:G:A	rs116903582	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	8.794191884553378	7.946349013672694	ACACTTAAATTTCAATCA
chr3	30545234	30545235	chr3:30545235:G:C	rs77262547	G	C	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	30985624	30985625	chr3:30985625:A:G	rs62233436	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr3	31187709	31187710	chr3:31187710:A:G	rs721960	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	31311880	31311881	chr3:31311881:C:T	rs79874446	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr3	31410228	31410229	chr3:31410229:G:A	rs1390109	G	A	A	Msx3.mouse_homeodomain_1	5	1	-	8.365911980432852	10.758897722943352	GAACTCAGAAGCCAATTA
chr3	31468765	31468766	chr3:31468766:C:T	rs11129451	C	T	c	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr3	31505598	31505599	chr3:31505599:G:C	rs11705937	G	C	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr3	31509612	31509613	chr3:31509613:C:T	rs56101891	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr3	31880944	31880945	chr3:31880945:G:A	rs79333014	G	A	A	Msx3.mouse_homeodomain_1	5	1	+	8.238207684375523	9.859387414686307	CCAATGACAGTGCAATTG
chr3	32048920	32048921	chr3:32048921:A:C	rs6778224	A	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr3	32052994	32052995	chr3:32052995:G:A	rs117183270	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr3	32056991	32056992	chr3:32056992:T:C	rs56218411	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	10.932185650086069	4.833639970216934	CTCATTATATGCTAATTA
chr3	32249710	32249711	chr3:32249711:T:C	rs6550109	T	C	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	32412907	32412908	chr3:32412908:A:G	rs56078421	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	33426836	33426837	chr3:33426837:G:T	rs9311014	G	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr3	33427115	33427116	chr3:33427116:T:C	chr3:33427116:T:C	T	C	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	33481169	33481170	chr3:33481170:A:G	rs9841969	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr3	33883506	33883507	chr3:33883507:A:G	rs60648778	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	13.465868756044372	10.897709158861169	TTAATTGAAATGCAATTA
chr3	33941704	33941705	chr3:33941705:A:G	rs11705838	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.457656266001573	3.488225289632696	CCAATAGTGAACCAATTT
chr3	34503658	34503659	chr3:34503659:A:G	rs997334	A	G	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	34647358	34647359	chr3:34647359:C:T	rs2216180	C	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr3	35485228	35485229	chr3:35485229:A:G	rs4678779	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr3	35615998	35615999	chr3:35615999:T:A	rs9828809	T	A	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr3	35616006	35616007	chr3:35616007:G:A	rs9809295	G	A	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	35645239	35645240	chr3:35645240:A:T	rs6799641	A	T	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr3	35733622	35733623	chr3:35733623:T:A	rs67723420	T	A	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr3	36176582	36176583	chr3:36176583:A:T	rs6550406	A	T	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr3	36244111	36244112	chr3:36244112:C:T	rs17034665	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	36598363	36598364	chr3:36598364:T:C	rs76227883	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr3	37248330	37248331	chr3:37248331:C:T	rs336597	C	T	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr3	37479133	37479134	chr3:37479134:A:G	rs17227482	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	8.766915983256304	7.760366650411096	CAAATTAGATAACAATAA
chr3	37715603	37715604	chr3:37715604:G:A	rs9841848	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	6.335788427882949	4.6255580088992385	CCACTTAAGTGCCCCTTA
chr3	38334634	38334635	chr3:38334635:C:T	chr3:38334635:C:T	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr3	38522794	38522795	chr3:38522795:C:T	rs62239347	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	40294046	40294047	chr3:40294047:T:C	rs57287242	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	9.331048060180908	3.2325023803117774	CCAATCAGTATAAAATTA
chr3	40333572	40333573	chr3:40333573:T:C	rs151327897	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	41565410	41565411	chr3:41565411:C:T	rs80241844	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	7.753270487563877	6.980430310821981	CCCATTATAATGGCATTA
chr3	41565444	41565445	chr3:41565445:T:C	rs1390341	T	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr3	41966357	41966358	chr3:41966358:T:C	rs73073229	T	C	T	Msx3.mouse_homeodomain_1	12	1	+	11.780028520966756	13.225151184533239	CCCATTATATGCTAATTA
chr3	42706355	42706356	chr3:42706356:G:A	rs74860159	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	43024442	43024443	chr3:43024443:T:A	rs9815609	T	A	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr3	43479947	43479948	chr3:43479948:C:T	rs76136732	C	T	c	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr3	43606542	43606543	chr3:43606543:G:T	rs1482651	G	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	43606674	43606675	chr3:43606675:C:A	rs1021049	C	A	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	44069389	44069390	chr3:44069390:A:G	rs143083688	A	G	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr3	44185654	44185655	chr3:44185655:G:A	rs75867895	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	44544875	44544876	chr3:44544876:C:T	rs11717830	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr3	44922992	44922993	chr3:44922993:C:G	rs1979946	C	G	C	Msx3.mouse_homeodomain_1	13	1	+	9.349003532146426	10.175922409717607	GAAATTTAAAACCCATTA
chr3	45065054	45065055	chr3:45065055:C:T	rs62242481	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr3	46091909	46091910	chr3:46091910:A:G	rs1491949	A	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	46116580	46116581	chr3:46116581:C:T	rs112129508	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr3	46138923	46138924	chr3:46138924:C:T	rs10510749	C	T	t	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	46234586	46234587	chr3:46234587:T:C	rs35035328	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.334482747643231	1.2359370677740968	GCAATTGATGAGCACTCA
chr3	46290360	46290361	chr3:46290361:A:C	rs17284138	A	C	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	46612691	46612692	chr3:46612692:G:T	rs17079007	G	T	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr3	46824335	46824336	chr3:46824336:A:G	rs6781694	A	G	g	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr3	47888929	47888930	chr3:47888930:C:G	rs319686	C	G	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr3	48473669	48473670	chr3:48473670:C:T	rs4858795	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	48869035	48869036	chr3:48869036:T:G	rs4974079	T	G	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	48931270	48931271	chr3:48931271:C:T	rs534797893	C	T	c	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr3	49208211	49208212	chr3:49208212:T:G	rs4955439	T	G	G	Msx3.mouse_homeodomain_1	5	1	+	9.612528669802336	5.169946892335171	TCCATTACAATGCAATTT
chr3	49411351	49411352	chr3:49411352:G:A	rs4855874	G	A	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr3	52598340	52598341	chr3:52598341:T:C	rs62253703	T	C	c	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr3	52857931	52857932	chr3:52857932:G:A	rs114377412	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr3	52893832	52893833	chr3:52893833:T:C	rs78931636	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	53201356	53201357	chr3:53201357:C:T	rs73076249	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr3	53218740	53218741	chr3:53218741:A:C	rs73840240	A	C	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr3	53545916	53545917	chr3:53545917:C:A	rs35306382	C	A	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	53570546	53570547	chr3:53570547:G:T	rs809394	G	T	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr3	54534178	54534179	chr3:54534179:C:T	rs9874177	C	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr3	54913974	54913975	chr3:54913975:T:C	rs1125025	T	C	t	Msx3.mouse_homeodomain_1	11	1	-	11.431728179760146	12.628679204935558	GCAATTACAACACCATTA
chr3	55427951	55427952	chr3:55427952:G:A	rs7640326	G	A	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	55884323	55884324	chr3:55884324:G:T	rs6763408	G	T	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr3	56340662	56340663	chr3:56340663:G:A	rs73832589	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.687896611395672	8.242773947829193	GCAATTGTCAGACGATTA
chr3	56868909	56868910	chr3:56868910:T:C	rs11714628	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr3	57158265	57158266	chr3:57158266:G:T	rs11710921	G	T	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	57592645	57592646	chr3:57592646:C:T	rs7644731	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	57892230	57892231	chr3:57892231:T:C	rs4273341	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	10.379803559297653	6.4103725829287725	CCAATTAAAGACAATTTA
chr3	57932213	57932214	chr3:57932214:A:G	rs704530	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	8.305461110827869	3.717366891804717	GCAATTAAAATACAATGT
chr3	58129156	58129157	chr3:58129157:C:T	rs3772993	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr3	58611838	58611839	chr3:58611839:T:C	rs7652223	T	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr3	59277899	59277900	chr3:59277900:C:T	rs78040317	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.435220171204424	6.990097507637942	TTAATCTTGAACCAATTA
chr3	59284987	59284988	chr3:59284988:A:G	rs11130688	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr3	59612365	59612366	chr3:59612366:A:G	rs9831268	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	12.83855022088698	8.250456001863828	GCAATTACCATCCCATTA
chr3	59775528	59775529	chr3:59775529:T:A	rs493783	T	A	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr3	60095380	60095381	chr3:60095381:C:T	rs35598923	C	T	C	Msx3.mouse_homeodomain_1	17	1	-	8.348276855153294	10.916436452336498	GCAATTGAAAAACAATAG
chr3	60217845	60217846	chr3:60217846:A:G	rs17062502	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	7.824045773562598	5.766771594656402	GGAATTACTCTGCAATCA
chr3	60512234	60512235	chr3:60512235:G:C	rs17610429	G	C	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	60898986	60898987	chr3:60898987:C:T	rs11130793	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr3	60899003	60899004	chr3:60899004:T:C	rs6804218	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	8.877651327321022	9.725494198201709	TTAATTGAAAAACAATAA
chr3	60992487	60992488	chr3:60992488:C:T	rs55712839	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr3	61735830	61735831	chr3:61735831:C:G	rs657267	C	G	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	61803234	61803235	chr3:61803235:G:A	rs67626913	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.308589082652894	8.20007952748815	GAAATTAAATTACATTTA
chr3	62066501	62066502	chr3:62066502:T:G	rs1253352899	T	G	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	62149127	62149128	chr3:62149128:T:C	rs7632091	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr3	62719399	62719400	chr3:62719400:G:C	rs6768003	G	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr3	63281264	63281265	chr3:63281265:C:T	rs12491231	C	T	C	Msx3.mouse_homeodomain_1	14	1	+	7.258468406273585	6.492687093178219	GTAATGACAGAGCACTTA
chr3	63488509	63488510	chr3:63488510:T:A	rs6794733	T	A	T	Msx3.mouse_homeodomain_1	0	1	-	7.250440495511094	7.168007796541047	ACAATTCACTACCAGTTA
chr3	64534443	64534444	chr3:64534444:G:A	rs7625847	G	A	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	64905683	64905684	chr3:64905684:T:G	rs704448	T	G	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr3	65134146	65134147	chr3:65134147:C:T	rs2012632	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr3	65233195	65233196	chr3:65233196:A:C	rs73126489	A	C	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr3	65401828	65401829	chr3:65401829:T:A	rs58137985	T	A	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr3	65401838	65401839	chr3:65401839:T:C	rs12634802	T	C	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr3	65485151	65485152	chr3:65485152:G:C	rs12054362	G	C	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	65650809	65650810	chr3:65650810:A:G	rs7633294	A	G	G	Msx3.mouse_homeodomain_1	5	1	+	10.650802024693668	9.029622294382882	GTGATAAGAATGCAATTA
chr3	65851385	65851386	chr3:65851386:A:G	rs6786634	A	G	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr3	65914072	65914073	chr3:65914073:T:G	rs76258687	T	G	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr3	66280386	66280387	chr3:66280387:G:T	rs782736	G	T	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr3	66516783	66516784	chr3:66516784:T:C	rs7646790	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	67380446	67380447	chr3:67380447:A:G	rs73098354	A	G	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr3	67423217	67423218	chr3:67423218:G:C	rs148691575	G	C	G	Msx3.mouse_homeodomain_1	7	1	-	7.052589955492896	7.332660964874058	ACACTTACAAAGCCATCA
chr3	67435465	67435466	chr3:67435466:A:G	rs6780361	A	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	67497032	67497033	chr3:67497033:A:G	rs62256397	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	10.475403075313608	9.58331404324236	CAAATTAAATACAGATTA
chr3	68256741	68256742	chr3:68256742:G:A	rs10440086	G	A	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr3	68266830	68266831	chr3:68266831:C:G	rs9839008	C	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr3	68458516	68458517	chr3:68458517:G:A	rs71312506	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr3	68536614	68536615	chr3:68536615:T:G	rs5005702	T	G	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr3	68536623	68536624	chr3:68536624:A:T	rs1511905	A	T	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr3	68666566	68666567	chr3:68666567:T:C	rs1394259	T	C	C	Msx3.mouse_homeodomain_1	2	1	+	8.3584249103045	9.131265087046398	GCTATCATTAGCTAATTA
chr3	68952322	68952323	chr3:68952323:C:T	rs1347752	C	T	C	Msx3.mouse_homeodomain_1	1	1	-	10.966086712986726	11.530146193074579	GGCATTAACTTGCAATTA
chr3	69010164	69010165	chr3:69010165:G:T	rs6807096	G	T	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr3	69251185	69251186	chr3:69251186:T:G	rs13322901	T	G	t	Msx3.mouse_homeodomain_1	13	1	-	7.798570296407893	4.914377239930516	CTAATTATACAGGACTTA
chr3	69370081	69370082	chr3:69370082:G:A	rs56411124	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr3	69432863	69432864	chr3:69432864:T:C	rs59234490	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr3	69687612	69687613	chr3:69687613:C:A	rs62252993	C	A	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	70428856	70428857	chr3:70428857:G:A	rs9847769	G	A	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr3	70571779	70571780	chr3:70571780:T:C	rs4974276	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr3	70740779	70740780	chr3:70740780:C:T	rs9880968	C	T	T	Msx3.mouse_homeodomain_1	8	1	+	9.272471072318595	9.1547674237936	GAAATTAACGCTTAATTA
chr3	70880831	70880832	chr3:70880832:T:C	rs2687202	T	C	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr3	71000081	71000082	chr3:71000082:A:C	rs528938220	A	C	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr3	71154130	71154131	chr3:71154131:T:C	rs4677021	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr3	71154140	71154141	chr3:71154141:A:G	rs1402993	A	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr3	71263365	71263366	chr3:71263366:G:A	rs952814	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr3	71497887	71497888	chr3:71497888:G:A	rs6798507	G	A	A	Msx3.mouse_homeodomain_1	17	1	+	8.105592717004477	10.67375231418768	TAAATTAAAAGCCCATTG
chr3	71579134	71579135	chr3:71579135:A:C	rs76929866	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	8.533504931932505	5.649311875455129	ATCCTTAAATGACAATTA
chr3	71718228	71718229	chr3:71718229:A:T	rs71298399	A	T	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr3	71718261	71718262	chr3:71718262:C:T	rs7648953	C	T	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr3	72274821	72274822	chr3:72274822:T:C	rs188511779	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.707378770264685	0.7999135333406804	AGAATTAAATTGCCATTG
chr3	72538197	72538198	chr3:72538198:T:G	rs114464162	T	G	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	72689800	72689801	chr3:72689801:T:C	rs11128291	T	C	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	72900223	72900224	chr3:72900224:T:C	rs4274693	T	C	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr3	73228772	73228773	chr3:73228773:C:T	rs62251246	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr3	73292446	73292447	chr3:73292447:G:T	rs530469835	G	T	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr3	73466589	73466590	chr3:73466590:G:A	rs62246080	G	A	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr3	73618652	73618653	chr3:73618653:C:G	rs142333786	C	G	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr3	73759079	73759080	chr3:73759080:C:T	rs12638673	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	73902000	73902001	chr3:73902001:T:G	rs2323206	T	G	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	74510810	74510811	chr3:74510811:T:A	rs7430531	T	A	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr3	74842547	74842548	chr3:74842548:G:A	rs62268097	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr3	74850783	74850784	chr3:74850784:T:G	rs73108855	T	G	T	Msx3.mouse_homeodomain_1	9	1	-	9.372268287364356	8.066037983420024	TTACTAAACATCCAATTA
chr3	75157061	75157062	chr3:75157062:T:C	rs114005983	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr3	75554662	75554663	chr3:75554663:A:G	rs9820852	A	G	.	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	76071073	76071074	chr3:76071074:G:T	rs6788637	G	T	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr3	76685209	76685210	chr3:76685210:T:G	rs1020496	T	G	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr3	76920587	76920588	chr3:76920588:A:G	rs3883984	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr3	77151013	77151014	chr3:77151014:C:T	rs9864444	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	12.585376781875027	11.761786037614847	CCAATTAAAATCAAATTG
chr3	77527010	77527011	chr3:77527011:A:G	rs812887	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr3	77586058	77586059	chr3:77586059:C:T	rs34171318	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.838535529476871	7.393412865910389	TCCATTAAGGAACCATTA
chr3	78347689	78347690	chr3:78347690:G:A	rs1512495	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr3	79761855	79761856	chr3:79761856:A:G	rs10865579	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.92441516697892	2.3363209479557705	TGAATTGGAGAGCAATTG
chr3	79879434	79879435	chr3:79879435:C:T	rs546006451	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr3	82473454	82473455	chr3:82473455:A:G	rs9842997	A	G	C	Msx3.mouse_homeodomain_1	3	1	+	8.055008867951159	4.085577891582281	CCAATGAAAATACAATAA
chr3	83003107	83003108	chr3:83003108:T:C	rs11706528	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	83879327	83879328	chr3:83879328:G:A	rs12487517	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr3	84590606	84590607	chr3:84590607:T:C	rs73128813	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	84602297	84602298	chr3:84602298:A:G	rs113988147	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	86695485	86695486	chr3:86695486:C:T	rs9858679	C	T	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	87333252	87333253	chr3:87333253:C:T	rs945888317	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr3	87368040	87368041	chr3:87368041:G:T	rs9866824	G	T	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr3	87398465	87398466	chr3:87398466:A:G	rs6791743	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr3	87891872	87891873	chr3:87891873:C:T	rs1503429	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr3	87901078	87901079	chr3:87901079:C:T	rs1465648	C	T	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr3	88257521	88257522	chr3:88257522:C:T	rs6551305	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.3239004509452945	5.878777787378812	TCAATTAAGAGACGGTTA
chr3	88403595	88403596	chr3:88403596:A:G	rs2344502	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	88409187	88409188	chr3:88409188:A:G	rs76786342	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr3	88484871	88484872	chr3:88484872:C:A	rs2344955	C	A	C	Msx3.mouse_homeodomain_1	5	1	+	8.255206477128699	7.826790172482821	GAAATCAATATGCACTTA
chr3	88707548	88707549	chr3:88707549:T:G	rs1995017	T	G	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	89244872	89244873	chr3:89244873:A:T	rs4857496	A	T	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr3	90010770	90010771	chr3:90010771:A:G	rs72921836	A	G	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr3	94168021	94168022	chr3:94168022:C:T	rs74808332	C	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr3	94168065	94168066	chr3:94168066:C:T	rs78147221	C	T	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr3	94626974	94626975	chr3:94626975:A:G	rs6796227	A	G	a	Msx3.mouse_homeodomain_1	5	1	-	7.974968001002037	5.581982258491537	TCAGTTCTAAAGCAATTA
chr3	94699583	94699584	chr3:94699584:A:C	rs116414672	A	C	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr3	95341587	95341588	chr3:95341588:G:A	rs113364986	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr3	95544659	95544660	chr3:95544660:C:G	rs62265165	C	G	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	95759540	95759541	chr3:95759541:T:C	rs2089865	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	95927607	95927608	chr3:95927608:A:G	rs12695311	A	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	96023471	96023472	chr3:96023472:A:G	rs9859017	A	G	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr3	96908646	96908647	chr3:96908647:T:C	rs62263680	T	C	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr3	97765807	97765808	chr3:97765808:G:A	rs1506444	G	A	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr3	98199422	98199423	chr3:98199423:C:T	rs2291810	C	T	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr3	99015902	99015903	chr3:99015903:T:A	rs2462226	T	A	A	Msx3.mouse_homeodomain_1	7	1	-	9.608990812912875	8.549045218924217	GGAATTGAGATTCAATTA
chr3	99173381	99173382	chr3:99173382:A:G	chr3:99173382:A:G	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	8.932321663059433	6.415453035122357	TCATTTACACTGCAATTA
chr3	99776752	99776753	chr3:99776753:A:G	rs35522745	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr3	99846860	99846861	chr3:99846861:A:G	rs115395477	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.981853894906457	4.393759675883308	ACACTAAATTAACAATTA
chr3	100702564	100702565	chr3:100702565:T:C	rs1144108	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr3	100782853	100782854	chr3:100782854:C:T	rs80279554	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	100782861	100782862	chr3:100782862:G:A	rs12330704	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr3	101066581	101066582	chr3:101066582:C:G	rs7374806	C	G	.	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr3	101309870	101309871	chr3:101309871:A:G	rs72936149	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr3	101310392	101310393	chr3:101310393:C:T	rs554215	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	101310414	101310415	chr3:101310415:C:T	rs570318	C	T	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	102083996	102083997	chr3:102083997:T:A	rs60776244	T	A	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr3	102192213	102192214	chr3:102192214:C:A	rs11927186	C	A	A	Msx3.mouse_homeodomain_1	11	1	-	7.361871641418263	5.737106763144816	CCAATTATCCTGCACTTT
chr3	102266401	102266402	chr3:102266402:G:C	rs2086269	G	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr3	103295990	103295991	chr3:103295991:G:A	rs1565676	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	103484613	103484614	chr3:103484614:A:G	rs79536303	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	8.420994208559858	5.8528346113766565	TGAATTAGTAACTGATTA
chr3	103644788	103644789	chr3:103644789:A:G	rs4856080	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr3	103644789	103644790	chr3:103644790:T:C	rs114018918	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	103894128	103894129	chr3:103894129:G:A	rs17531796	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr3	103919908	103919909	chr3:103919909:C:A	rs1344053	C	A	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	104564172	104564173	chr3:104564173:G:A	rs150521653	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr3	104645400	104645401	chr3:104645401:A:C	rs9852100	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	12.77545725936648	9.8912642028891	ACAATTAAGTTATAATTA
chr3	104708296	104708297	chr3:104708297:A:C	rs9813174	A	C	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr3	104708329	104708330	chr3:104708330:G:T	rs2607959	G	T	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr3	106014096	106014097	chr3:106014097:T:G	rs537409510	T	G	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr3	106014104	106014105	chr3:106014105:T:G	rs74733964	T	G	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	106133276	106133277	chr3:106133277:A:G	rs9863473	A	G	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr3	106190511	106190512	chr3:106190512:G:A	rs149704703	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	106206670	106206671	chr3:106206671:C:T	rs12485949	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	106206720	106206721	chr3:106206721:T:C	rs35405193	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr3	106579009	106579010	chr3:106579010:A:G	rs7614427	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr3	107207449	107207450	chr3:107207450:C:G	rs62391970	C	G	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr3	108302426	108302427	chr3:108302427:T:C	rs9288866	T	C	C	Msx3.mouse_homeodomain_1	9	1	-	15.18639385560629	14.245849863220148	CCAATCAAAATGCAATTA
chr3	108302446	108302447	chr3:108302447:G:A	rs10933936	G	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr3	109023937	109023938	chr3:109023938:C:T	rs13075898	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr3	109241833	109241834	chr3:109241834:T:A	rs899835767	T	A	.	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr3	109460928	109460929	chr3:109460929:G:C	rs769532	G	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	109926746	109926747	chr3:109926747:T:A	rs67243448	T	A	T	Msx3.mouse_homeodomain_1	9	1	+	10.168523806898573	10.582665078771655	GTCATCAATTAACAATTA
chr3	109934868	109934869	chr3:109934869:C:T	rs66894762	C	T	c	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	110193776	110193777	chr3:110193777:T:C	rs10511281	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	110237407	110237408	chr3:110237408:C:T	rs7620248	C	T	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr3	110237415	110237416	chr3:110237416:A:G	rs7642246	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.687663914657956	3.71823293828908	GCCATTGCCATGCAATCA
chr3	110881350	110881351	chr3:110881351:C:T	rs140711962	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr3	110995911	110995912	chr3:110995912:C:T	rs9835919	C	T	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr3	111073049	111073050	chr3:111073050:C:T	chr3:111073050:C:T	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	111123428	111123429	chr3:111123429:T:C	rs1351049	T	C	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr3	111285875	111285876	chr3:111285876:T:G	rs980137942	T	G	T	Msx3.mouse_homeodomain_1	8	1	-	10.754004974409643	9.834438149777089	GAAATTGGAGTGCAATTA
chr3	111634624	111634625	chr3:111634625:G:A	rs4682052	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr3	111728211	111728212	chr3:111728212:A:G	rs4682298	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	9.847897108596737	8.955808076525486	TAAATCATCTACCAATTA
chr3	111812949	111812950	chr3:111812950:A:T	rs143423065	A	T	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr3	112365576	112365577	chr3:112365577:G:A	rs72952437	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr3	112396314	112396315	chr3:112396315:C:T	rs2633607	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr3	112744576	112744577	chr3:112744577:A:G	rs865363	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	10.96484463845924	4.0573794015352345	TCAATAAATAACAAATTA
chr3	112988524	112988525	chr3:112988525:A:G	rs7652466	A	G	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr3	113409839	113409840	chr3:113409840:C:G	rs6767932	C	G	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	113509840	113509841	chr3:113509841:A:G	rs9846539	A	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr3	113721912	113721913	chr3:113721913:C:T	rs763007326	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	6.899653771954209	7.976244942890685	GCAATGAGTCGGCAATTG
chr3	114792508	114792509	chr3:114792509:T:C	rs12490319	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr3	115239715	115239716	chr3:115239716:G:C	rs73859741	G	C	g	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr3	115265019	115265020	chr3:115265020:C:A	rs9851621	C	A	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr3	116176436	116176437	chr3:116176437:C:T	rs9875465	C	T	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr3	116188735	116188736	chr3:116188736:A:G	rs1542482	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr3	116195999	116196000	chr3:116196000:A:T	rs998806	A	T	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr3	116444497	116444498	chr3:116444498:C:T	rs35192256	C	T	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	116971823	116971824	chr3:116971824:T:C	rs60374490	T	C	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr3	116971824	116971825	chr3:116971825:G:T	rs17718069	G	T	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr3	117055656	117055657	chr3:117055657:A:G	rs74363313	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr3	117243955	117243956	chr3:117243956:C:T	rs1381854	C	T	T	Msx3.mouse_homeodomain_1	0	1	+	9.727027339283644	8.903436595023464	CCCATAAATTTACAATTA
chr3	117426694	117426695	chr3:117426695:C:T	rs78128364	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr3	117820984	117820985	chr3:117820985:C:T	rs72951594	C	T	A	Msx3.mouse_homeodomain_1	0	1	+	8.919187418312191	8.095596674052011	CGAATTACTGGGTAATTA
chr3	118001507	118001508	chr3:118001508:A:G	rs861001	A	G	G	Msx3.mouse_homeodomain_1	16	1	-	10.126416678616607	7.001467525022755	CGAATTACAATCCCATTA
chr3	118200660	118200661	chr3:118200661:A:G	rs9846686	A	G	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr3	118253380	118253381	chr3:118253381:A:C	rs4688091	A	C	A	Msx3.mouse_homeodomain_1	1	1	+	9.312384817529818	12.012674194470286	GAAATTAACCTAAAATTA
chr3	118532060	118532061	chr3:118532061:C:G	rs4585187	C	G	G	Msx3.mouse_homeodomain_1	1	1	-	7.100253483404161	10.364602340432477	CGAAGTAGAGAGCAATTA
chr3	118532063	118532064	chr3:118532064:G:A	rs79789909	G	A	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr3	119529473	119529474	chr3:119529474:A:G	rs9855093	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	9.469281041018665	8.35946550369507	GCCCTTAAAAAAAAATTA
chr3	119659045	119659046	chr3:119659046:A:C	rs13065543	A	C	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr3	119671371	119671372	chr3:119671372:G:A	rs6794484	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	9.480435166120184	10.420979158506327	GCACTTGAGGTACAATTA
chr3	119690141	119690142	chr3:119690142:C:A	rs2698281	C	A	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	119841758	119841759	chr3:119841759:T:C	rs6805251	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	10.063600856302873	6.938651702709021	CTAATAAAGTTCAAATTA
chr3	120142424	120142425	chr3:120142425:G:A	rs79884317	G	A	G	Msx3.mouse_homeodomain_1	2	1	+	8.09232709523474	10.609195723171819	ACGATAACAAAGAAATTA
chr3	120312674	120312675	chr3:120312675:T:A	rs6808344	T	A	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr3	120524792	120524793	chr3:120524793:A:C	rs72960890	A	C	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	120597355	120597356	chr3:120597356:G:C	rs16831523	G	C	.	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr3	120849002	120849003	chr3:120849003:T:G	rs4676831	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	8.40182965613765	5.517636599660274	ATAATTTTTGCCCAATTA
chr3	122338274	122338275	chr3:122338275:G:A	rs9823459	G	A	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr3	122392713	122392714	chr3:122392714:A:G	rs2002594	A	G	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	122882943	122882944	chr3:122882944:A:C	rs964845	A	C	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr3	123190167	123190168	chr3:123190168:G:T	rs13097154	G	T	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr3	123299178	123299179	chr3:123299179:T:G	rs59508443	T	G	G	Msx3.mouse_homeodomain_1	16	1	+	9.316823041636148	4.243290265526818	GCAATCTGTAGCCAATTA
chr3	123834782	123834783	chr3:123834783:G:C	rs2682208	G	C	C	Msx3.mouse_homeodomain_1	0	1	+	9.254622870901805	8.887271361027192	GCTCTAAAATACCAATTA
chr3	123859185	123859186	chr3:123859186:A:G	rs16834817	A	G	a	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr3	124169630	124169631	chr3:124169631:G:T	rs4677919	G	T	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr3	124410509	124410510	chr3:124410510:T:G	rs9809750	T	G	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	124616228	124616229	chr3:124616229:C:T	rs56107458	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	125107194	125107195	chr3:125107195:T:C	rs10512635	T	C	c	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	125152128	125152129	chr3:125152129:G:T	rs184876464	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	7.218816929905475	4.51852755296501	GCAGTTCTGGAGCAATTA
chr3	125678613	125678614	chr3:125678614:A:G	rs7642649	A	G	.	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	125961721	125961722	chr3:125961722:C:T	rs1875686	C	T	T	Msx3.mouse_homeodomain_1	7	1	+	7.942732493677728	8.272673446393828	CCACTTACTATGTCATTA
chr3	125961724	125961725	chr3:125961725:T:C	rs1875685	T	C	C	Msx3.mouse_homeodomain_1	10	1	+	7.942732493677728	6.898760193804013	CCACTTACTATGTCATTA
chr3	126167514	126167515	chr3:126167515:C:T	rs4646699	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr3	126293873	126293874	chr3:126293874:C:T	rs56398711	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr3	127008452	127008453	chr3:127008453:A:G	rs9881343	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr3	127038744	127038745	chr3:127038745:T:G	rs55696744	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	7.729413734539732	4.845220678062356	GCACTCAAGCAGCAATCA
chr3	127119625	127119626	chr3:127119626:A:G	rs11711126	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr3	127230510	127230511	chr3:127230511:A:G	rs11925520	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	127286844	127286845	chr3:127286845:A:G	rs13066890	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	127449174	127449175	chr3:127449175:A:T	rs4974430	A	T	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	127889247	127889248	chr3:127889248:G:T	rs73205319	G	T	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr3	127955337	127955338	chr3:127955338:G:A	rs116661419	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr3	128062027	128062028	chr3:128062028:A:G	rs9820563	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.189600292175066	2.6015060731519166	GTAATCCAGCCCCAATTA
chr3	128870169	128870170	chr3:128870170:A:G	rs728838	A	G	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr3	129249280	129249281	chr3:129249281:G:A	rs73862834	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr3	129454209	129454210	chr3:129454210:T:C	rs55752712	T	C	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	129597490	129597491	chr3:129597491:C:G	chr3:129597491:C:G	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	8.08224854981211	4.817899692783795	CCCATTATTTACCGATCA
chr3	130423566	130423567	chr3:130423567:G:A	rs35665175	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr3	130537994	130537995	chr3:130537995:A:G	rs9851011	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr3	130537997	130537998	chr3:130537998:G:A	rs7619287	G	A	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr3	131798292	131798293	chr3:131798293:G:A	rs1849512	G	A	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr3	131845729	131845730	chr3:131845730:A:T	rs13083554	A	T	A	Msx3.mouse_homeodomain_1	16	1	+	8.918355524878852	12.80319345240191	TCAATAAAAAATCAATAA
chr3	132354564	132354565	chr3:132354565:G:A	rs17182707	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr3	132443986	132443987	chr3:132443987:T:C	rs9830434	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr3	132890064	132890065	chr3:132890065:G:A	rs7636451	G	A	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	132964222	132964223	chr3:132964223:G:A	rs73207587	G	A	A	Msx3.mouse_homeodomain_1	11	1	-	6.536554254411432	4.826323835427722	GCACTCACTCCCTAATTA
chr3	133107300	133107301	chr3:133107301:G:A	rs6762949	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr3	133152854	133152855	chr3:133152855:G:A	rs9289440	G	A	G	Msx3.mouse_homeodomain_1	12	1	+	8.44172161963861	9.429795878485944	GCAATTAAGGGCGACTTA
chr3	133169814	133169815	chr3:133169815:A:G	rs942959008	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	8.342970643840928	6.2856964649347296	GCAATTATCTATCAAATA
chr3	133251595	133251596	chr3:133251596:A:G	rs9809358	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.665713026899332	3.077618807876183	CCACTTAGAATCCCATCA
chr3	133271988	133271989	chr3:133271989:C:T	rs57116584	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	9.60762645535068	8.759783584469993	TCAATAAAAATGCATTTA
chr3	133355724	133355725	chr3:133355725:A:G	rs35128664	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr3	133374891	133374892	chr3:133374892:G:C	rs1197288	G	C	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr3	133460857	133460858	chr3:133460858:T:C	rs548160962	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr3	133661437	133661438	chr3:133661438:T:A	chr3:133661438:T:A	T	A	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	134318553	134318554	chr3:134318554:G:T	rs9289466	G	T	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	134372336	134372337	chr3:134372337:T:G	rs3755762	T	G	G	Msx3.mouse_homeodomain_1	17	1	-	11.387270466413277	6.800413885286767	CCAATTCAGGTGCAATTA
chr3	134904302	134904303	chr3:134904303:G:C	rs148580288	G	C	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr3	135238747	135238748	chr3:135238748:T:A	rs2400511	T	A	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	135896763	135896764	chr3:135896764:G:C	rs7627556	G	C	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	136659436	136659437	chr3:136659437:T:G	chr3:136659437:T:G	T	G	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr3	136863194	136863195	chr3:136863195:G:T	rs56308712	G	T	G	Msx3.mouse_homeodomain_1	12	1	+	8.927314341065689	10.981574696115366	GAAATTAGGAAAGAATTA
chr3	137808097	137808098	chr3:137808098:C:T	rs12488404	C	T	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr3	138039392	138039393	chr3:138039393:A:T	rs329131	A	T	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr3	138853155	138853156	chr3:138853156:G:A	rs12631035	G	A	a	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	139443156	139443157	chr3:139443157:C:T	rs4683608	C	T	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr3	139757651	139757652	chr3:139757652:A:G	rs12490444	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr3	139757674	139757675	chr3:139757675:C:T	rs12496911	C	T	T	Msx3.mouse_homeodomain_1	11	1	+	10.438023467719585	8.727793048735876	ATTATTAATATCTAATTA
chr3	139991247	139991248	chr3:139991248:G:A	rs1426033	G	A	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr3	140527402	140527403	chr3:140527403:G:A	rs479568	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.509877626282229	8.401368071117485	GCAATTATTAAAAAATCA
chr3	140575493	140575494	chr3:140575494:A:G	rs347971	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	140686811	140686812	chr3:140686812:C:T	rs698675	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	140830242	140830243	chr3:140830243:A:G	rs13086288	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr3	141174661	141174662	chr3:141174662:C:T	rs1877224	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	141203050	141203051	chr3:141203051:G:A	rs9880393	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	8.47926597205436	9.485815304899567	GGAATTCAGAAGTAATTA
chr3	141409842	141409843	chr3:141409843:C:A	rs117567438	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr3	141707924	141707925	chr3:141707925:C:T	rs116564471	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr3	141777864	141777865	chr3:141777865:A:G	rs73872326	A	G	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr3	142087690	142087691	chr3:142087691:G:A	rs143191805	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr3	142113657	142113658	chr3:142113658:A:C	rs73233890	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	11.213903953167318	6.968888146695154	GTCATTAAAATGTGATTA
chr3	142613792	142613793	chr3:142613793:C:G	rs28709617	C	G	C	Msx3.mouse_homeodomain_1	11	1	-	8.2299673437022	8.315432884412463	ACAATCACAGTGCAATAA
chr3	143065116	143065117	chr3:143065117:A:G	rs7648143	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.9157015371644155	2.327607318141265	ACCATTGCAAGGCAATCA
chr3	143146179	143146180	chr3:143146180:A:G	rs4683456	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	143172062	143172063	chr3:143172063:A:G	rs73159656	A	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr3	143224903	143224904	chr3:143224904:A:G	rs9862637	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	7.881957440808363	5.313797843625161	CCATTTAAAATGTAATCA
chr3	143418483	143418484	chr3:143418484:T:C	rs73144777	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.116349142000791	5.146918165631915	ACAATCAAGAAGTAATTT
chr3	143629215	143629216	chr3:143629216:A:G	rs146797343	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	10.813598554968447	6.225504335945296	TCAATTAATAGACAATCA
chr3	143744995	143744996	chr3:143744996:G:C	rs17651169	G	C	C	Msx3.mouse_homeodomain_1	11	1	+	7.78037653269162	7.8658420734018835	CCAATTAACGCGCATTTG
chr3	143898579	143898580	chr3:143898580:C:T	rs6440204	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	8.041159803437012	6.596037139870529	GCTTTTAGGAAGCAATTA
chr3	144467273	144467274	chr3:144467274:T:C	rs9866115	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	6.62667596896419	2.0385817499410397	GCACTCAGCTACCTATTA
chr3	144516712	144516713	chr3:144516713:C:T	rs71621113	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	144747384	144747385	chr3:144747385:A:C	rs147162924	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	7.38491028346546	2.311377507356131	TCAGTTAAAGCCTGATTA
chr3	145152346	145152347	chr3:145152347:A:G	rs9879359	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr3	145209707	145209708	chr3:145209708:G:A	rs9875413	G	A	g	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	145605154	145605155	chr3:145605155:C:A	rs13090251	C	A	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr3	145719555	145719556	chr3:145719556:T:C	rs58187053	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr3	145896917	145896918	chr3:145896918:T:C	rs16857534	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	146164101	146164102	chr3:146164102:G:A	rs35479343	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr3	146164131	146164132	chr3:146164132:G:A	rs73148999	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr3	146309212	146309213	chr3:146309213:T:G	rs9836580	T	G	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	146334152	146334153	chr3:146334153:G:C	rs762281594	G	C	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr3	146542678	146542679	chr3:146542679:C:G	rs2587008	C	G	C	Msx3.mouse_homeodomain_1	11	1	+	8.845172028133334	8.759706487423074	ACTATTAAGTTCTGATTA
chr3	146724617	146724618	chr3:146724618:T:A	rs1545004	T	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr3	148758121	148758122	chr3:148758122:A:G	rs16860855	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	148830059	148830060	chr3:148830060:G:A	rs76192458	G	A	g	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr3	149000607	149000608	chr3:149000608:G:A	rs4681476	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr3	149170872	149170873	chr3:149170873:G:A	rs28372892	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	149474139	149474140	chr3:149474140:T:C	rs189026240	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr3	149593306	149593307	chr3:149593307:A:C	rs7638700	A	C	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr3	149814420	149814421	chr3:149814421:A:G	rs3755620	A	G	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr3	152026795	152026796	chr3:152026796:A:G	rs12695976	A	G	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr3	152072165	152072166	chr3:152072166:C:T	rs866869598	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	152186022	152186023	chr3:152186023:G:A	rs323609	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	152292352	152292353	chr3:152292353:A:G	rs76360965	A	G	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr3	152865969	152865970	chr3:152865970:A:G	rs73869856	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	8.653603766461472	8.77130741498647	GTAATAATTACCCAATTG
chr3	152937340	152937341	chr3:152937341:A:C	rs2043853	A	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr3	152937367	152937368	chr3:152937368:T:G	rs9817893	T	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	152957919	152957920	chr3:152957920:A:T	rs9289883	A	T	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr3	153652625	153652626	chr3:153652626:C:T	rs115832095	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr3	153652628	153652629	chr3:153652629:A:G	rs34712095	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr3	153731297	153731298	chr3:153731298:A:C	rs76951511	A	C	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr3	154482264	154482265	chr3:154482265:G:C	rs59029172	G	C	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	154778301	154778302	chr3:154778302:A:G	rs6803413	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr3	154778326	154778327	chr3:154778327:C:T	rs61560935	C	T	C	Msx3.mouse_homeodomain_1	5	1	-	7.895483796886972	9.516663527197757	CCAATGAGGATGCAATCA
chr3	154778328	154778329	chr3:154778329:T:C	rs9847426	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.895483796886972	3.926052820518095	CCAATGAGGATGCAATCA
chr3	155252482	155252483	chr3:155252483:C:T	rs2171017	C	T	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr3	155863535	155863536	chr3:155863536:G:A	rs385529	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr3	156037343	156037344	chr3:156037344:A:G	rs75294995	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr3	156554196	156554197	chr3:156554197:C:T	rs144203243	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	8.976178909153397	8.152588164893213	CCAATTAGTGAGCCATCA
chr3	156579327	156579328	chr3:156579328:C:T	rs17367831	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr3	157130847	157130848	chr3:157130848:C:A	rs7644860	C	A	A	Msx3.mouse_homeodomain_1	8	1	+	8.34043862500058	9.260005449633134	GAAATTACCTTGCTATTA
chr3	157271773	157271774	chr3:157271774:A:G	rs55734537	A	G	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr3	157607668	157607669	chr3:157607669:G:A	rs74966790	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr3	157856286	157856287	chr3:157856287:A:G	rs7644647	A	G	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr3	158165928	158165929	chr3:158165929:T:G	rs73874313	T	G	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr3	158261914	158261915	chr3:158261915:C:T	rs827113	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	158587657	158587658	chr3:158587658:G:A	rs6779054	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr3	158649767	158649768	chr3:158649768:A:G	rs73156455	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	159775882	159775883	chr3:159775883:G:A	rs80117263	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr3	160618047	160618048	chr3:160618048:A:G	rs2178451	A	G	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr3	160808677	160808678	chr3:160808678:A:G	rs58891820	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	8.09055642026063	5.5736877923235495	ACACTCAGCATGTAATTA
chr3	160831405	160831406	chr3:160831406:C:A	rs59521461	C	A	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr3	161026782	161026783	chr3:161026783:T:G	rs898677	T	G	G	Msx3.mouse_homeodomain_1	7	1	-	8.184300316304112	6.794413769599359	GCCATTAAAAACCAGTTT
chr3	161560359	161560360	chr3:161560360:T:G	rs62279583	T	G	T	Msx3.mouse_homeodomain_1	3	1	-	11.179874174721494	8.299699810188596	CAAATCAAACTGCAATTA
chr3	161657561	161657562	chr3:161657562:C:T	rs1399915	C	T	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr3	161737803	161737804	chr3:161737804:T:G	rs73168065	T	G	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr3	162192906	162192907	chr3:162192907:G:A	rs74487732	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr3	162441763	162441764	chr3:162441764:A:T	rs4856688	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	8.050762967801667	3.8683545049616996	CTGCTTGAGTACCAATTA
chr3	162569429	162569430	chr3:162569430:T:C	rs570485484	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	163043187	163043188	chr3:163043188:G:A	rs4568163	G	A	A	Msx3.mouse_homeodomain_1	7	1	-	7.991471982580068	8.321412935296168	CCCATTACGGGCCAATTT
chr3	163043209	163043210	chr3:163043210:G:A	rs147687271	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	164364823	164364824	chr3:164364824:C:T	rs1311357021	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr3	165457393	165457394	chr3:165457394:T:G	rs6804778	T	G	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	165463758	165463759	chr3:165463759:T:C	rs73167338	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr3	165464691	165464692	chr3:165464692:A:G	rs62293358	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr3	165979897	165979898	chr3:165979898:C:T	rs75745596	C	T	-	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr3	165979898	165979899	chr3:165979899:A:G	rs116601257	A	G	-	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr3	166455748	166455749	chr3:166455749:T:C	rs13315107	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	10.343847612209398	9.267256441272924	CTTATTATACACTAATTA
chr3	167232832	167232833	chr3:167232833:C:T	rs4465943	C	T	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	167407858	167407859	chr3:167407859:G:A	rs9823090	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr3	167684762	167684763	chr3:167684763:T:A	rs1018404960	T	A	T	Msx3.mouse_homeodomain_1	13	1	-	8.442322520653196	4.25991405781323	CCCATTAATTACAAATTT
chr3	167930413	167930414	chr3:167930414:T:A	rs1875131	T	A	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr3	167935999	167936000	chr3:167936000:G:A	rs35684724	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr3	168052326	168052327	chr3:168052327:C:T	rs9824277	C	T	T	Msx3.mouse_homeodomain_1	16	1	+	8.443747840189754	11.568696993783607	CTAATAACAAAGTAATCA
chr3	168250383	168250384	chr3:168250384:A:G	rs190122400	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.14170134483404	1.2342361079100352	GTAGTCATTAGCCAATTA
chr3	168517394	168517395	chr3:168517395:T:C	rs77138107	T	C	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	168823720	168823721	chr3:168823721:C:T	rs77293976	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr3	168927054	168927055	chr3:168927055:C:A	rs1498445	C	A	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	169379544	169379545	chr3:169379545:A:C	rs80292783	A	C	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr3	169749692	169749693	chr3:169749693:T:C	rs10936596	T	C	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr3	169772148	169772149	chr3:169772149:C:T	rs35100673	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr3	169772157	169772158	chr3:169772158:A:G	rs3821383	A	G	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr3	169772174	169772175	chr3:169772175:A:C	rs1390499743	A	C	A	Msx3.mouse_homeodomain_1	4	1	-	8.713377564400474	3.0553883124507744	GCAATTCTCAAGTGATTA
chr3	169772186	169772187	chr3:169772187:C:T	rs745810635	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	169914582	169914583	chr3:169914583:A:C	rs16854599	A	C	A	Msx3.mouse_homeodomain_1	9	1	+	8.437755821989413	7.13152551804508	CTGATTAAAAAACAATGA
chr3	169964266	169964267	chr3:169964267:G:A	rs73043920	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	10.802849252204727	11.879440423141205	ACAATTAAAAGGCCATTG
chr3	170057460	170057461	chr3:170057461:T:A	rs2241296	T	A	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr3	170162798	170162799	chr3:170162799:T:G	rs79004681	T	G	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr3	170232693	170232694	chr3:170232694:C:T	rs76515783	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr3	171175424	171175425	chr3:171175425:C:T	rs6777931	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr3	171733027	171733028	chr3:171733028:A:G	rs1009088583	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.386308648671208	2.7982144296480564	CCAATCAGATGGCAATCG
chr3	171733036	171733037	chr3:171733037:C:T	rs1882256	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr3	171975221	171975222	chr3:171975222:G:A	rs142416922	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr3	172050283	172050284	chr3:172050284:A:G	rs9290439	A	G	G	Msx3.mouse_homeodomain_1	17	1	+	8.586181070644187	6.018021473460984	AAAATTACATACCATTTA
chr3	172244413	172244414	chr3:172244414:G:A	rs62281807	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	172351781	172351782	chr3:172351782:A:G	rs77786315	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	7.566834407614107	0.6593691706901015	GCACTCAAGTCATAATTA
chr3	172586003	172586004	chr3:172586004:C:T	rs73032726	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr3	172748523	172748524	chr3:172748524:T:G	rs1568590	T	G	T	Msx3.mouse_homeodomain_1	7	1	-	9.064858306032509	7.674971759327753	ACTATTAAGCACCCATTA
chr3	172794879	172794880	chr3:172794880:A:C	rs73175007	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	10.636674101734094	5.563141325624765	CTACTTAAAAAAAAATTA
chr3	172905210	172905211	chr3:172905211:C:T	rs12629617	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	10.14625661092002	9.298413740039333	ACAATCAAATTGCAATAA
chr3	173584009	173584010	chr3:173584010:T:C	rs113109960	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.5252627821482845	3.5558318057794063	GTGATTTCAAAGCAATTG
chr3	173719536	173719537	chr3:173719537:G:C	rs55756412	G	C	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	174088451	174088452	chr3:174088452:A:T	rs67417469	A	T	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr3	174336114	174336115	chr3:174336115:C:A	rs1520161	C	A	A	Msx3.mouse_homeodomain_1	12	1	+	7.71793969524502	5.206630935476197	CCAATTAACAGCCAATGT
chr3	175151457	175151458	chr3:175151458:G:C	rs936479	G	C	G	Msx3.mouse_homeodomain_1	13	1	+	9.872095275843025	9.045176398271844	CCAATTAACATCTGATTT
chr3	175151468	175151469	chr3:175151469:G:C	rs936478	G	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr3	175672306	175672307	chr3:175672307:A:C	rs548553066	A	C	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr3	175672311	175672312	chr3:175672312:A:C	rs16826106	A	C	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr3	175956582	175956583	chr3:175956583:T:C	rs12330745	T	C	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr3	176631266	176631267	chr3:176631267:C:T	rs75001120	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr3	176631284	176631285	chr3:176631285:T:C	rs36016321	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	7.829716377069857	7.947420025594853	CCCATTATTGTGTCATTA
chr3	176868154	176868155	chr3:176868155:A:G	rs146850811	A	G	A	Msx3.mouse_homeodomain_1	10	1	-	7.631790037631272	6.5878177377575575	CCAGTTAGTTTCTGATTA
chr3	177108774	177108775	chr3:177108775:A:C	rs73187540	A	C	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	177189511	177189512	chr3:177189512:A:G	rs10936934	A	G	a	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	177262599	177262600	chr3:177262600:G:A	rs76594178	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr3	177262618	177262619	chr3:177262619:C:A	rs76490044	C	A	C	Msx3.mouse_homeodomain_1	6	1	-	8.659762063541718	7.509557083360756	GCAATTGATCTCCAATTC
chr3	177297244	177297245	chr3:177297245:T:C	rs115471393	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	6.1486063841589855	1.560512165135836	ACCATTAGGAGCCAATCG
chr3	177363663	177363664	chr3:177363664:T:C	rs73173113	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr3	177414292	177414293	chr3:177414293:T:A	rs11920793	T	A	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr3	177478243	177478244	chr3:177478244:C:T	rs73173184	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	177524370	177524371	chr3:177524371:C:T	rs375618938	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr3	177982188	177982189	chr3:177982189:A:G	rs16828845	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr3	178236846	178236847	chr3:178236847:T:C	rs111408334	T	C	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr3	178570377	178570378	chr3:178570378:G:A	rs9816839	G	A	A	Msx3.mouse_homeodomain_1	10	1	+	8.217741493876925	9.2943326648134	GAAATTAGGAGGTCATTA
chr3	178656335	178656336	chr3:178656336:A:G	rs7429015	A	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr3	179866002	179866003	chr3:179866003:C:T	rs67980618	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr3	179977661	179977662	chr3:179977662:A:G	rs13090958	A	G	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr3	180356647	180356648	chr3:180356648:A:G	rs62290972	A	G	a	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr3	181056884	181056885	chr3:181056885:G:A	rs1805646	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr3	182979674	182979675	chr3:182979675:A:G	rs73177390	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	10.295017817444123	6.325586841075245	ACTATAATAAAGCAATTA
chr3	182979691	182979692	chr3:182979692:C:T	rs73883989	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr3	183011807	183011808	chr3:183011808:T:C	rs59889069	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr3	183418421	183418422	chr3:183418422:T:C	rs75678117	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	8.044892470891792	4.919943317297939	ACATTTCAAAACCAATTA
chr3	183977719	183977720	chr3:183977720:G:A	rs116583553	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr3	183981154	183981155	chr3:183981155:A:C	rs6802849	A	C	C	Msx3.mouse_homeodomain_1	10	1	+	9.087227655346346	7.54968383149751	TTAATTATCTACTACTTA
chr3	184620165	184620166	chr3:184620166:C:G	rs9874395	C	G	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr3	185787998	185787999	chr3:185787999:C:T	rs4481184	C	T	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr3	186331141	186331142	chr3:186331142:T:G	rs6767474	T	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr3	186380594	186380595	chr3:186380595:A:C	rs75303487	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	9.694957338538142	6.810764282060766	ATGATTAGAACTCAATTA
chr3	186867737	186867738	chr3:186867738:C:T	rs17373414	C	T	c	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr3	186983003	186983004	chr3:186983004:A:C	rs13097481	A	C	A	Msx3.mouse_homeodomain_1	10	1	-	10.195571939898667	9.612552292937313	GTAATTAGATTACTATTA
chr3	187474064	187474065	chr3:187474065:C:T	rs115814463	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr3	187931946	187931947	chr3:187931947:A:T	rs544966	A	T	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr3	188036206	188036207	chr3:188036207:A:G	rs11710227	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	188161811	188161812	chr3:188161812:C:T	rs4686476	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr3	188477008	188477009	chr3:188477009:G:A	rs74885419	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr3	188882060	188882061	chr3:188882061:T:A	rs77754221	T	A	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr3	188914581	188914582	chr3:188914582:C:T	rs145427806	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr3	188914607	188914608	chr3:188914608:A:C	rs77557752	A	C	C	Msx3.mouse_homeodomain_1	13	1	+	9.858154186414557	6.97396112993718	ACAATTAAAGCTCAATTT
chr3	188915139	188915140	chr3:188915140:T:G	rs143127091	T	G	T	Msx3.mouse_homeodomain_1	8	1	-	8.023465934261733	7.103899109629178	ATACTTACACAGCCATTA
chr3	189393924	189393925	chr3:189393925:A:G	rs36104781	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr3	189502129	189502130	chr3:189502130:G:T	rs9858349	G	T	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	189508342	189508343	chr3:189508343:C:A	rs16864459	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr3	189539470	189539471	chr3:189539471:A:T	rs6793510	A	T	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr3	189720899	189720900	chr3:189720900:T:C	rs10804920	T	C	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr3	190579968	190579969	chr3:190579969:C:A	rs1024938	C	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr3	190728890	190728891	chr3:190728891:C:A	rs9853837	C	A	A	Msx3.mouse_homeodomain_1	0	1	-	7.403965912529077	6.2130236583942855	GTAGTTACTTTGCCATTA
chr3	190763928	190763929	chr3:190763929:T:G	rs7620866	T	G	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr3	190763934	190763935	chr3:190763935:G:T	rs7653697	G	T	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr3	190811948	190811949	chr3:190811949:T:C	rs17517370	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr3	190811955	190811956	chr3:190811956:C:A	rs1005074623	C	A	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr3	190811969	190811970	chr3:190811970:T:G	rs561414917	T	G	T	Msx3.mouse_homeodomain_1	9	1	+	8.49418509508666	7.967782374573598	GCTATTGATTCCTAATTA
chr3	190991065	190991066	chr3:190991066:T:A	rs80299424	T	A	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr3	191066595	191066596	chr3:191066596:T:C	rs9290967	T	C	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr3	191143469	191143470	chr3:191143470:A:G	rs9290976	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	9.030692587257011	2.123227350333005	ACACTTAGACTGAAATTA
chr3	191258635	191258636	chr3:191258636:T:A	rs12488159	T	A	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr3	192079824	192079825	chr3:192079825:A:C	rs6444628	A	C	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr3	192542372	192542373	chr3:192542373:T:C	rs9810948	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr3	192879554	192879555	chr3:192879555:A:C	rs6778146	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	9.669456815370179	5.424441008898019	GAAATTAAAAAGTGATTG
chr3	193048029	193048030	chr3:193048030:A:G	rs9855714	A	G	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr3	193231293	193231294	chr3:193231294:C:T	rs11924860	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	7.044820204112752	7.936909236184001	TCCATTAGACGGTCATTA
chr3	193734135	193734136	chr3:193734136:T:C	rs140828952	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr3	194085784	194085785	chr3:194085785:A:G	rs2130724	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr3	194213022	194213023	chr3:194213023:T:C	rs139676688	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr3	194232635	194232636	chr3:194232636:T:C	rs7621615	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr3	194232644	194232645	chr3:194232645:A:T	rs7631881	A	T	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr3	194232657	194232658	chr3:194232658:A:G	rs115636945	A	G	A	Msx3.mouse_homeodomain_1	10	1	-	8.164203579931627	7.120231280057912	ACAATTATTGTGAAATCA
chr3	194294386	194294387	chr3:194294387:T:G	rs11922293	T	G	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr3	194403691	194403692	chr3:194403692:A:G	rs11900	A	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	194637557	194637558	chr3:194637558:A:T	rs6792200	A	T	A	Msx3.mouse_homeodomain_1	7	1	+	10.031251084745026	8.971305490756368	ACAATTTAAAAAAAATTA
chr3	194637564	194637565	chr3:194637565:A:T	rs7636896	A	T	T	Msx3.mouse_homeodomain_1	14	1	+	10.031251084745026	5.7044907333954695	ACAATTTAAAAAAAATTA
chr3	194757958	194757959	chr3:194757959:G:A	rs4234201	G	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr3	194757995	194757996	chr3:194757996:G:A	rs111274024	G	A	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr3	194769170	194769171	chr3:194769171:C:G	rs151029506	C	G	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr3	194871870	194871871	chr3:194871871:A:G	rs143238307	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.041966554372881	3.0725355780040036	TCAATGACATGGCCATTA
chr3	194871895	194871896	chr3:194871896:T:C	rs67144479	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	194925122	194925123	chr3:194925123:A:T	rs112369985	A	T	T	Msx3.mouse_homeodomain_1	2	1	+	7.656676884123697	4.501249265911079	TCAATAATCACACGATTA
chr3	194944611	194944612	chr3:194944612:T:C	rs1469674	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr3	195005776	195005777	chr3:195005777:C:G	rs9810190	C	G	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr3	195015754	195015755	chr3:195015755:A:G	rs6437449	A	G	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr3	195136099	195136100	chr3:195136100:A:C	rs751302185	A	C	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr3	195357932	195357933	chr3:195357933:A:C	rs60100329	A	C	A	Msx3.mouse_homeodomain_1	9	1	+	8.108570340171301	6.80234003622697	GGAATTACCAAACACTTA
chr3	195522433	195522434	chr3:195522434:G:T	rs79844829	G	T	.	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr3	195602085	195602086	chr3:195602086:T:G	rs113650734	T	G	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr3	195608465	195608466	chr3:195608466:G:A	rs9886963	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	7.247449092507781	5.537218673524071	GCAATTAGATACGCATTT
chr3	195951562	195951563	chr3:195951563:C:G	rs9854449	C	G	-	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr3	196021658	196021659	chr3:196021659:C:T	rs7624460	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	11.644020037874814	12.687992337748529	CCAATTAAGACGCAATAA
chr3	196160817	196160818	chr3:196160818:C:A	rs59713295	C	A	a	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr3	196756882	196756883	chr3:196756883:A:C	rs145424357	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	6.897651390778239	2.652635584306076	GCAATGAAATAGCACTCA
chr3	197174865	197174866	chr3:197174866:A:G	rs58575516	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	8.74568977063738	6.228821142700302	CAAATTGTAAAGCAATCA
chr3	197181547	197181548	chr3:197181548:G:C	rs4916462	G	C	C	Msx3.mouse_homeodomain_1	4	1	+	10.17671580977197	9.736159381852534	TCAAGTAAGATCCAATTA
chr3	197311901	197311902	chr3:197311902:T:G	rs35656080	T	G	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr3	197333994	197333995	chr3:197333995:G:A	rs115016807	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr3	197564524	197564525	chr3:197564525:C:T	rs35077721	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr3	197714623	197714624	chr3:197714624:G:C	rs9812670	G	C	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr3	197714638	197714639	chr3:197714639:C:T	rs6775867	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	10.530660773993542	9.682817903112856	ACACTTTAATACCAATTA
chr3	197921838	197921839	chr3:197921839:T:C	rs113228990	T	C	-	Msx3.mouse_homeodomain_1	9	1	-	7.719995865138226	6.779451872752079	TCAATCAAGATGAAATCA
chr4	873727	873728	chr4:873728:G:A	rs75295122	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr4	2413116	2413117	chr4:2413117:T:C	rs61790170	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.463853354859499	2.8757591358363497	GCATTTGCAGGGCAATTA
chr4	2413132	2413133	chr4:2413133:G:C	rs73074345	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr4	3011177	3011178	chr4:3011178:C:T	rs147376333	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr4	3078178	3078179	chr4:3078179:G:C	rs28377140	G	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr4	4520187	4520188	chr4:4520188:T:C	rs8180115	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr4	4652629	4652630	chr4:4652630:T:C	rs2063413	T	C	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr4	4846621	4846622	chr4:4846622:G:A	rs4597767	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	4911214	4911215	chr4:4911215:A:G	rs4593079	A	G	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr4	5162601	5162602	chr4:5162602:A:T	rs74774976	A	T	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr4	5276641	5276642	chr4:5276642:A:G	rs73084035	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr4	6175759	6175760	chr4:6175760:A:G	rs75557688	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	6955569	6955570	chr4:6955570:T:G	rs4234791	T	G	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr4	6955604	6955605	chr4:6955605:G:A	rs41410847	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr4	7010130	7010131	chr4:7010131:C:G	rs2301820	C	G	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	7010164	7010165	chr4:7010165:C:A	rs2301821	C	A	c	Msx3.mouse_homeodomain_1	2	1	-	10.736523383446858	10.097964393171313	TCGATTAAAATGTGATTA
chr4	7124790	7124791	chr4:7124791:C:A	rs6446569	C	A	C	Msx3.mouse_homeodomain_1	5	1	-	6.743008927110751	11.185590704577915	GCAATGGCCCAACAATTA
chr4	7124814	7124815	chr4:7124815:C:T	rs73796437	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	7223859	7223860	chr4:7223860:G:C	rs4689089	G	C	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr4	7223875	7223876	chr4:7223876:T:G	rs369054065	T	G	G	Msx3.mouse_homeodomain_1	6	1	-	10.088456774320669	5.843440967848509	GCACTTAACAGCCACTTA
chr4	7418847	7418848	chr4:7418848:A:G	rs7682286	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	7.781118745378222	3.193024526355071	GTAGTAAGCAGCCAATTA
chr4	7471477	7471478	chr4:7471478:C:T	rs4495038	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr4	7642377	7642378	chr4:7642378:C:T	rs78369008	C	T	T	Msx3.mouse_homeodomain_1	7	1	-	9.930551873998326	11.04036741132192	TAAATTAGAGAGCAATTG
chr4	7642385	7642386	chr4:7642386:T:C	rs55703108	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr4	7831413	7831414	chr4:7831414:C:A	rs4234832	C	A	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr4	8584839	8584840	chr4:8584840:G:T	rs35335006	G	T	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	8695855	8695856	chr4:8695856:C:T	rs62286479	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr4	8707120	8707121	chr4:8707121:C:T	rs10938739	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	8707266	8707267	chr4:8707267:A:G	rs116552306	A	G	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr4	8721732	8721733	chr4:8721733:C:G	rs6843081	C	G	G	Msx3.mouse_homeodomain_1	12	1	+	8.749753172902192	5.250370154286033	GAAATAAAGACTCAATTA
chr4	9737224	9737225	chr4:9737225:T:G	rs115170452	T	G	t	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr4	10031410	10031411	chr4:10031411:C:A	rs112395808	C	A	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr4	10062379	10062380	chr4:10062380:T:C	rs7676605	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr4	10491262	10491263	chr4:10491263:C:G	rs9291420	C	G	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr4	11112176	11112177	chr4:11112177:A:G	rs55686829	A	G	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr4	11183054	11183055	chr4:11183055:G:A	rs60277933	G	A	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr4	11515099	11515100	chr4:11515100:A:G	rs9997161	A	G	G	Msx3.mouse_homeodomain_1	10	1	+	10.22923480712032	9.15264363618385	TCAATTAACTACTATTTA
chr4	14027122	14027123	chr4:14027123:C:T	rs522578	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr4	14836092	14836093	chr4:14836093:T:C	rs10939596	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr4	14874802	14874803	chr4:14874803:T:C	rs6858687	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr4	15009883	15009884	chr4:15009884:C:T	rs2643087	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr4	15241643	15241644	chr4:15241644:G:A	rs6449119	G	A	A	Msx3.mouse_homeodomain_1	11	1	+	11.956201847723161	10.759250822547752	GTAATTAAAAAGAAATCA
chr4	15334001	15334002	chr4:15334002:A:G	rs16891737	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr4	15624119	15624120	chr4:15624120:G:A	rs28447067	G	A	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr4	15735904	15735905	chr4:15735905:C:T	rs770462841	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr4	15739256	15739257	chr4:15739257:A:G	rs2286879	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	8.168433996771856	5.775448254261357	TCAAGTAATGAGTAATTA
chr4	15983918	15983919	chr4:15983919:T:C	rs2302169	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr4	16122844	16122845	chr4:16122845:G:T	rs59747831	G	T	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr4	16156197	16156198	chr4:16156198:A:C	rs317864	A	C	.	Msx3.mouse_homeodomain_1	17	1	+	6.836212930708775	2.2493563495822664	CCACTCCCATACCAATTA
chr4	16414526	16414527	chr4:16414527:A:G	rs10008301	A	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	16866159	16866160	chr4:16866160:G:T	rs11737577	G	T	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr4	17112527	17112528	chr4:17112528:G:A	rs73136976	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	18140318	18140319	chr4:18140319:C:A	rs188220161	C	A	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	18297038	18297039	chr4:18297039:A:G	rs16896899	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	9.139401807271327	8.809460854555226	GCACTTATACTGCACTTA
chr4	18571845	18571846	chr4:18571846:G:A	rs75287310	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr4	18678208	18678209	chr4:18678209:G:A	chr4:18678209:G:A	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr4	18750280	18750281	chr4:18750281:A:G	rs11946322	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr4	18839043	18839044	chr4:18839044:G:A	rs28409998	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr4	18851121	18851122	chr4:18851122:A:G	rs16897709	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.211998630993271	4.623904411970122	CTAATTAGGCTCCTATTA
chr4	19297220	19297221	chr4:19297221:A:T	rs62296407	A	T	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	20127099	20127100	chr4:20127100:A:G	rs567817481	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr4	21187562	21187563	chr4:21187563:A:C	rs10938837	A	C	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr4	21507570	21507571	chr4:21507571:T:G	rs11736408	T	G	T	Msx3.mouse_homeodomain_1	6	1	-	8.532658867142839	4.287643060670681	TGAATTAAAAAGCCATTG
chr4	21507583	21507584	chr4:21507584:C:T	rs17467166	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	22088377	22088378	chr4:22088378:C:T	rs2323310	C	T	T	Msx3.mouse_homeodomain_1	11	1	+	10.297283111631504	8.587052692647795	GCCATTAATCACTGATTA
chr4	22480729	22480730	chr4:22480730:T:C	rs2875040	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	9.568294611203154	8.561745278357943	GTAAGTATACAGCAATTA
chr4	22487608	22487609	chr4:22487609:G:A	rs16872745	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	22499006	22499007	chr4:22499007:G:A	rs189541769	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr4	22536655	22536656	chr4:22536656:A:G	rs12233913	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	23305622	23305623	chr4:23305623:T:C	rs28454890	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr4	23455916	23455917	chr4:23455917:T:A	rs10488996	T	A	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr4	23455922	23455923	chr4:23455923:T:A	rs10488995	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	8.023964178767766	3.6972038274182095	CTCATCAAGTTGAAATTA
chr4	23455947	23455948	chr4:23455948:T:C	rs146725145	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr4	23856226	23856227	chr4:23856227:T:G	rs58236409	T	G	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr4	24260465	24260466	chr4:24260466:C:T	rs17581643	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	24462667	24462668	chr4:24462668:T:C	rs61791532	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	24908812	24908813	chr4:24908813:T:G	rs35897466	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	11.752611544160523	7.165754963034013	TTAATTAGATAGCAATCA
chr4	25800314	25800315	chr4:25800315:C:A	rs6857125	C	A	A	Msx3.mouse_homeodomain_1	12	1	+	7.2207193485715475	4.709410588802722	GCCATTAATTACCCATTC
chr4	25872768	25872769	chr4:25872769:G:A	rs6448410	G	A	G	Msx3.mouse_homeodomain_1	10	1	-	6.857724001718952	7.901696301592668	CCAATAAGGGCCCAATAA
chr4	26020182	26020183	chr4:26020183:G:A	rs35887900	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	11.604468136910654	12.681059307847132	CTTATTATATGCCAATTA
chr4	26020188	26020189	chr4:26020189:T:C	rs74574646	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	11.604468136910654	8.479518983316801	CTTATTATATGCCAATTA
chr4	26032799	26032800	chr4:26032800:C:T	rs41467047	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr4	26081072	26081073	chr4:26081073:C:T	rs4318634	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr4	26400564	26400565	chr4:26400565:A:G	rs11726853	A	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr4	27201150	27201151	chr4:27201151:T:C	rs6857150	T	C	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr4	27217553	27217554	chr4:27217554:C:G	rs17591810	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	7.667571985037994	4.403223128009678	CCACTTAAGAAGTAATGA
chr4	27981934	27981935	chr4:27981935:G:A	rs2871304	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	6.806500967957649	5.361378304391168	GGAATAGGCAGGCAATTA
chr4	28097819	28097820	chr4:28097820:T:C	rs6858327	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	9.525363584678107	3.426817904808973	CCAATTATCGAGTTATTA
chr4	28177059	28177060	chr4:28177060:A:G	rs13103623	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	28261351	28261352	chr4:28261352:C:T	rs73221867	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr4	28354900	28354901	chr4:28354901:A:G	rs13111729	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.61864129167224	4.030547072649089	CCCATTGAAATTAAATTA
chr4	28546404	28546405	chr4:28546405:A:T	rs16880756	A	T	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr4	28564251	28564252	chr4:28564252:G:A	rs73215417	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	28931970	28931971	chr4:28931971:T:G	rs12642441	T	G	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr4	29227996	29227997	chr4:29227997:G:A	rs2117896	G	A	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr4	29496037	29496038	chr4:29496038:G:A	rs16881880	G	A	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr4	30386590	30386591	chr4:30386591:C:A	rs9942174	C	A	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr4	30454426	30454427	chr4:30454427:A:G	rs10012883	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr4	30576552	30576553	chr4:30576553:G:A	rs13131444	G	A	g	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr4	30744842	30744843	chr4:30744843:T:C	rs1486787	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	30881503	30881504	chr4:30881504:A:G	rs35554621	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	31020742	31020743	chr4:31020743:A:G	rs10026905	A	G	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr4	31020766	31020767	chr4:31020767:C:T	rs73214977	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	6.958006811047455	8.00197911092117	GCAATCCAGGCCTAATTA
chr4	31020784	31020785	chr4:31020785:C:T	rs115447754	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	31241306	31241307	chr4:31241307:C:A	rs79282950	C	A	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr4	31374643	31374644	chr4:31374644:A:G	rs140706570	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr4	31667729	31667730	chr4:31667730:A:G	rs60827352	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	8.272835330899376	5.704675733716175	TCAATAATCATTCGATTA
chr4	32078545	32078546	chr4:32078546:A:G	rs4423921	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.95568282644811	3.3675886074249606	GTCCTCATGAACCAATTA
chr4	32396711	32396712	chr4:32396712:A:C	rs11734184	A	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr4	32644381	32644382	chr4:32644382:G:T	rs10002823	G	T	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr4	32679921	32679922	chr4:32679922:C:T	rs6825897	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr4	34366254	34366255	chr4:34366255:G:A	rs4463088	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	9.750576158225815	8.305453494659332	ACAATTAAAACCCACTTG
chr4	34651519	34651520	chr4:34651520:T:A	rs73225656	T	A	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr4	34679205	34679206	chr4:34679206:A:T	rs73225665	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	9.166719726494268	4.984311263654301	ATAATTAAGAACAAATAA
chr4	35588694	35588695	chr4:35588695:A:G	rs181207055	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr4	35771870	35771871	chr4:35771871:C:T	rs143044935	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr4	36339268	36339269	chr4:36339269:T:C	rs56246836	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr4	36823520	36823521	chr4:36823521:A:T	rs75787624	A	T	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr4	37533468	37533469	chr4:37533469:C:T	rs116830667	C	T	T	Msx3.mouse_homeodomain_1	2	1	-	8.262388440592304	10.779257068529382	ACGATCCAAAACCAATTA
chr4	37647834	37647835	chr4:37647835:C:T	rs9996223	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	37828665	37828666	chr4:37828666:A:G	rs2911909	A	G	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr4	37852560	37852561	chr4:37852561:A:G	rs4832960	A	G	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr4	37978532	37978533	chr4:37978533:T:A	rs185572412	T	A	T	Msx3.mouse_homeodomain_1	5	1	-	9.25883383078234	12.080235877938723	TTCATAAAAATGTAATTA
chr4	38083277	38083278	chr4:38083278:G:C	rs12507972	G	C	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr4	38274442	38274443	chr4:38274443:C:T	rs7660869	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	38383845	38383846	chr4:38383846:G:A	rs74832629	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr4	38383857	38383858	chr4:38383858:G:A	rs17499404	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr4	38500448	38500449	chr4:38500449:G:A	rs765945437	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr4	38801186	38801187	chr4:38801187:G:A	rs750669654	G	A	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr4	39033193	39033194	chr4:39033194:T:C	rs79550386	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr4	39044369	39044370	chr4:39044370:A:C	rs59264560	A	C	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr4	39699969	39699970	chr4:39699970:A:T	rs1282800124	A	T	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	39809828	39809829	chr4:39809829:T:C	rs28877956	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr4	40161350	40161351	chr4:40161351:A:G	rs6531759	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr4	40188842	40188843	chr4:40188843:T:C	rs6819683	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	40195862	40195863	chr4:40195863:G:A	rs75541047	G	A	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr4	40232594	40232595	chr4:40232595:A:G	rs6832249	A	G	G	Msx3.mouse_homeodomain_1	11	1	-	9.659006527620381	11.36923694660409	TCAGTTAACAGTCAATTA
chr4	40232603	40232604	chr4:40232604:T:C	rs6837475	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	9.659006527620381	7.142137899683303	TCAGTTAACAGTCAATTA
chr4	40299641	40299642	chr4:40299642:T:A	rs79198515	T	A	T	Msx3.mouse_homeodomain_1	12	1	-	8.246548219131977	9.312734315334321	CCAATCAATAAGAAATAA
chr4	40404399	40404400	chr4:40404400:G:C	rs141576296	G	C	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr4	40723208	40723209	chr4:40723209:C:G	rs146290126	C	G	c	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr4	40962470	40962471	chr4:40962471:T:C	rs62410355	T	C	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr4	41320279	41320280	chr4:41320280:T:G	rs116592634	T	G	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	41363242	41363243	chr4:41363243:C:T	rs56072549	C	T	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr4	41456445	41456446	chr4:41456446:C:T	rs62411120	C	T	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr4	41456481	41456482	chr4:41456482:T:C	rs62411121	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr4	41507304	41507305	chr4:41507305:T:C	rs76505379	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	11.216903337422067	6.628809118398917	GGAATTAACAACCAATCA
chr4	41688496	41688497	chr4:41688497:A:C	rs79819895	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	8.50281546256608	1.595350225642075	CCAATCAAATGCTATTTA
chr4	42032538	42032539	chr4:42032539:A:G	rs4861013	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr4	42409439	42409440	chr4:42409440:T:C	rs1141790	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr4	42750403	42750404	chr4:42750404:A:T	rs10000801	A	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr4	42816443	42816444	chr4:42816444:C:T	rs79743102	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr4	42855157	42855158	chr4:42855158:G:A	rs1993060	G	A	G	Msx3.mouse_homeodomain_1	7	1	+	8.545324658293197	9.655140195616791	GCAATTAGGGAGAATTTA
chr4	43112507	43112508	chr4:43112508:T:C	rs78289301	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr4	43146581	43146582	chr4:43146582:G:T	rs7662118	G	T	G	Msx3.mouse_homeodomain_1	3	1	-	6.516911144428705	9.397085508961602	CCACTCACCTGCCAATTG
chr4	43235220	43235221	chr4:43235221:G:A	rs12152559	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr4	44553524	44553525	chr4:44553525:G:A	rs1548043	G	A	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	44635833	44635834	chr4:44635834:C:T	rs2348352	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr4	44927895	44927896	chr4:44927896:A:C	rs7684874	A	C	C	Msx3.mouse_homeodomain_1	2	1	+	9.332023915505303	6.949436474034578	TAAATTTAAAATCAATTA
chr4	44978024	44978025	chr4:44978025:C:T	rs55637509	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	45030263	45030264	chr4:45030264:A:G	rs112051458	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr4	45030295	45030296	chr4:45030296:A:G	rs75926674	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	45030302	45030303	chr4:45030303:T:G	rs111368148	T	G	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr4	45179316	45179317	chr4:45179317:A:T	rs12507026	A	T	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr4	45663810	45663811	chr4:45663811:G:A	rs7682261	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr4	46085715	46085716	chr4:46085716:A:C	rs17536211	A	C	A	Msx3.mouse_homeodomain_1	2	1	-	12.32197325486327	12.960532245138811	ATTATTAAGAAGCAATTA
chr4	46389555	46389556	chr4:46389556:T:A	rs2119767	T	A	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr4	47565561	47565562	chr4:47565562:A:G	rs13127414	A	G	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr4	47686795	47686796	chr4:47686796:C:T	rs4441728	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	47701819	47701820	chr4:47701820:C:A	rs115933461	C	A	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr4	47713240	47713241	chr4:47713241:T:C	rs17654381	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr4	48081003	48081004	chr4:48081004:G:A	rs12647931	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	48109873	48109874	chr4:48109874:G:C	rs79738733	G	C	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr4	48127094	48127095	chr4:48127095:T:A	rs6819592	T	A	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr4	48175256	48175257	chr4:48175257:C:T	rs1466995	C	T	T	Msx3.mouse_homeodomain_1	8	1	-	10.445828683817407	11.452378016662617	TCAATTACGTTGGAATTA
chr4	48370388	48370389	chr4:48370389:G:C	rs75239362	G	C	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr4	48493597	48493598	chr4:48493598:T:C	rs7694862	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr4	48493644	48493645	chr4:48493645:T:A	rs17472113	T	A	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr4	48641630	48641631	chr4:48641631:C:G	rs10938537	C	G	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	49159854	49159855	chr4:49159855:G:T	rs2657828	G	T	.	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr4	49214504	49214505	chr4:49214505:G:C	rs868193067	G	C	.	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr4	52265618	52265619	chr4:52265619:A:G	rs970047	A	G	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr4	52642184	52642185	chr4:52642185:T:C	rs114363983	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr4	53633718	53633719	chr4:53633719:C:T	rs7679341	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr4	53676397	53676398	chr4:53676398:C:T	rs17083272	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	9.610047459339125	8.413096434163712	TCAATCAACAAGCATTTA
chr4	53764071	53764072	chr4:53764072:T:A	rs7676596	T	A	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr4	54197311	54197312	chr4:54197312:C:T	rs13121020	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	7.987109430900563	7.214269254158668	GCCATTGTAAAGAGATTA
chr4	54677034	54677035	chr4:54677035:T:C	rs112147886	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	10.751029767491367	6.78159879112249	GCAATAAACCAATAATTA
chr4	54746677	54746678	chr4:54746678:T:C	rs746690840	T	C	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr4	54854148	54854149	chr4:54854149:G:A	rs1391133	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr4	55434517	55434518	chr4:55434518:C:T	rs3749474	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr4	55434545	55434546	chr4:55434546:T:C	rs144092443	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr4	55925591	55925592	chr4:55925592:G:A	rs73238402	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr4	56051091	56051092	chr4:56051092:G:A	rs35976456	G	A	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr4	56148709	56148710	chr4:56148710:T:C	rs6837469	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	8.936104475745983	7.99556048335984	ACAATAAAGAAACAATTT
chr4	56207475	56207476	chr4:56207476:A:G	rs1600267	A	G	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr4	56259949	56259950	chr4:56259950:A:G	rs77274323	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.808753916645912	5.220659697622762	ACAATCAGAACCCAATTG
chr4	56618657	56618658	chr4:56618658:A:T	rs74376021	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	6.944548816045377	2.762140353205411	TCAATTACCTCCCACTTG
chr4	56756070	56756071	chr4:56756071:A:G	rs7679018	A	G	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	56756085	56756086	chr4:56756086:C:T	rs932518774	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	7.670135976912435	6.846545232652253	CCAATTAGAGGACAAATA
chr4	57081210	57081211	chr4:57081211:T:C	rs56268824	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr4	57081227	57081228	chr4:57081228:C:T	rs11573048	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	9.303003436316928	11.360277615223126	GCAATTCCAAAGTGATTA
chr4	57136054	57136055	chr4:57136055:T:C	rs80133715	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.9649715680014	3.9955405916325217	GCCATTATATGCTTATTA
chr4	58627614	58627615	chr4:58627615:G:T	rs11723305	G	T	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr4	58683802	58683803	chr4:58683803:T:G	rs57219308	T	G	t	Msx3.mouse_homeodomain_1	7	1	+	8.574300935584771	8.524430992249835	ACAATTATAAAGCATTTT
chr4	59200346	59200347	chr4:59200347:A:G	rs4860419	A	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr4	59283498	59283499	chr4:59283499:A:G	rs13134179	A	G	G	Msx3.mouse_homeodomain_1	17	1	-	11.97066469195254	10.75459430670483	GCAATTATATATCAATTT
chr4	59462686	59462687	chr4:59462687:G:C	rs2063471	G	C	g	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr4	60923280	60923281	chr4:60923281:C:T	rs10000668	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr4	61127532	61127533	chr4:61127533:G:A	rs2342539	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	7.966025571962864	9.042616742899341	GGAATTGTGAGTCAATTA
chr4	61829164	61829165	chr4:61829165:A:G	rs73823249	A	G	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr4	62232485	62232486	chr4:62232486:C:T	rs10027076	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	62532029	62532030	chr4:62532030:C:A	rs6854964	C	A	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr4	63114137	63114138	chr4:63114138:C:G	rs58201993	C	G	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr4	63228584	63228585	chr4:63228585:C:T	rs2615606	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr4	63233516	63233517	chr4:63233517:T:C	rs34537979	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr4	63850642	63850643	chr4:63850643:C:T	rs4560443	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr4	63906928	63906929	chr4:63906929:T:C	rs1349182	T	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	64729363	64729364	chr4:64729364:C:T	rs7695484	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr4	65378577	65378578	chr4:65378578:T:G	rs2034538	T	G	G	Msx3.mouse_homeodomain_1	14	1	-	12.898713615520847	9.337734577266659	CCAATAAAATTGTAATTA
chr4	66062519	66062520	chr4:66062520:T:C	rs2350715	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	68379919	68379920	chr4:68379920:C:T	rs4860935	C	T	c	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	68449829	68449830	chr4:68449830:G:T	rs36030967	G	T	T	Msx3.mouse_homeodomain_1	6	1	-	8.500104353762215	12.745120160234379	CCCATTCAGATGTAATTA
chr4	69274287	69274288	chr4:69274288:G:T	rs4694708	G	T	.	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr4	69404978	69404979	chr4:69404979:C:T	rs62307174	C	T	.	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr4	70519077	70519078	chr4:70519078:G:A	rs28485033	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	8.221990964280533	7.113481409115788	GCAATAGGCTAGAAATTA
chr4	70843436	70843437	chr4:70843437:C:T	rs4694348	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr4	72110675	72110676	chr4:72110676:A:C	rs78319140	A	C	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr4	72210537	72210538	chr4:72210538:A:G	rs12640971	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr4	72557360	72557361	chr4:72557361:T:G	rs2623532	T	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	72557406	72557407	chr4:72557407:C:T	rs7689931	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	72707038	72707039	chr4:72707039:T:A	rs16848539	T	A	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	72762010	72762011	chr4:72762011:T:C	rs7693945	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr4	72768578	72768579	chr4:72768579:G:C	rs6446873	G	C	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr4	72814291	72814292	chr4:72814292:G:A	rs60589574	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr4	73577573	73577574	chr4:73577574:T:C	rs75521381	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	73660878	73660879	chr4:73660879:T:C	rs7666794	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.246336235471329	4.276905259102452	GCAATAAACAAGCAATAG
chr4	73951377	73951378	chr4:73951378:A:G	rs4399951	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	74202242	74202243	chr4:74202243:C:T	chr4:74202243:C:T	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	11.30514633281862	9.860023669252136	CCAAGTAGAAAGCAATTA
chr4	74362536	74362537	chr4:74362537:T:A	rs6446991	T	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr4	74450573	74450574	chr4:74450574:G:A	rs2291716	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	9.113407531542197	7.403177112558487	AAAATTAACCTCCCATTA
chr4	74831556	74831557	chr4:74831557:C:T	rs13126474	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr4	74998424	74998425	chr4:74998425:A:T	rs6830360	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	9.899030684597	3.820117265239142	TTAATTACCTTCCAATTT
chr4	76054893	76054894	chr4:76054894:T:C	rs78895754	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr4	76054902	76054903	chr4:76054903:T:C	rs4593163	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr4	76078003	76078004	chr4:76078004:G:A	rs9307071	G	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr4	76531653	76531654	chr4:76531654:C:T	rs10006052	C	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr4	76997812	76997813	chr4:76997813:A:G	rs7692644	A	G	G	Msx3.mouse_homeodomain_1	13	1	+	7.839415775684506	5.78214159677831	GCAATTTGTTGGCAATTT
chr4	77314167	77314168	chr4:77314168:G:T	rs11935174	G	T	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr4	77497630	77497631	chr4:77497631:A:G	rs17414505	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	8.280304761456287	5.76343613351921	CCAATTATTTTCTGATTT
chr4	77582808	77582809	chr4:77582809:T:C	rs355684	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	10.227002916083745	6.257571939714867	TCAATAACTTACTAATTA
chr4	78031611	78031612	chr4:78031612:G:A	rs979512	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	6.989819000561156	8.06641017149763	GCAATTGGAAGCCAAGTA
chr4	78328825	78328826	chr4:78328826:A:T	rs142855619	A	T	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr4	78409992	78409993	chr4:78409993:T:G	rs5021256	T	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr4	78484914	78484915	chr4:78484915:T:A	rs7660569	T	A	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	78556839	78556840	chr4:78556840:T:C	rs1446187297	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr4	78991432	78991433	chr4:78991433:A:G	rs1013837	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	9.262100755365129	6.745232127428053	CCAATTCAGAGCCAATTG
chr4	79610170	79610171	chr4:79610171:A:G	rs2903640	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.286439471250041	4.317008494881164	TCCATTATTAACAGATTA
chr4	79757988	79757989	chr4:79757989:A:C	rs11730157	A	C	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr4	79831029	79831030	chr4:79831030:T:C	rs28634222	T	C	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr4	79852949	79852950	chr4:79852950:G:A	rs10024534	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr4	79870196	79870197	chr4:79870197:T:C	rs115433468	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	79963039	79963040	chr4:79963040:G:C	rs6838578	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr4	80186693	80186694	chr4:80186694:C:A	rs141320209	C	A	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	80367846	80367847	chr4:80367847:A:G	rs7695746	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	8.708789355341104	8.378848402625003	GAAATTATCTGGCACTTA
chr4	80926781	80926782	chr4:80926782:T:C	rs112545845	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	80930414	80930415	chr4:80930415:A:T	rs1051101447	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	10.626640330667133	6.444231867827164	CTAATTAATAGCTAATCA
chr4	81255617	81255618	chr4:81255618:T:A	rs62302308	T	A	T	Msx3.mouse_homeodomain_1	0	1	+	7.966270580109771	8.04870327907982	TCCATTACAGAGTAATCA
chr4	81492523	81492524	chr4:81492524:T:G	rs7691170	T	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr4	81628498	81628499	chr4:81628499:G:A	rs7661460	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr4	81629568	81629569	chr4:81629569:T:C	rs11099488	T	C	T	Msx3.mouse_homeodomain_1	12	1	+	8.54317148832461	9.988294151891093	CTAATTAATGGGTTATTA
chr4	81723499	81723500	chr4:81723500:T:C	rs11099497	T	C	C	Msx3.mouse_homeodomain_1	9	1	+	8.597298171102501	7.705209139031253	CCAATGATTTGGTAATTA
chr4	81724399	81724400	chr4:81724400:G:C	rs4298128	G	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr4	82036392	82036393	chr4:82036393:G:A	rs72654595	G	A	G	Msx3.mouse_homeodomain_1	8	1	-	7.612647955263685	7.494944306738689	ACAATAAGCGACTAATTG
chr4	82346594	82346595	chr4:82346595:G:A	rs13125219	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr4	82352067	82352068	chr4:82352068:G:C	rs17005587	G	C	g	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr4	82360772	82360773	chr4:82360773:C:T	chr4:82360773:C:T	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	82696547	82696548	chr4:82696548:T:C	rs2868694	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.172651826496828	4.584557607473679	CTAATTTAGTACCAATCA
chr4	83126933	83126934	chr4:83126934:A:G	rs12500349	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	7.635515927157418	5.11864729922034	CCATTTATTTACCCATTA
chr4	83240704	83240705	chr4:83240705:A:G	rs7696105	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	8.12587773703678	7.233788704965532	GCAGTTATGTTGCAATTT
chr4	83269595	83269596	chr4:83269596:A:G	rs6535453	A	G	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr4	83357689	83357690	chr4:83357690:A:G	rs58570199	A	G	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr4	83659705	83659706	chr4:83659706:A:G	rs7694926	A	G	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr4	84082001	84082002	chr4:84082002:T:C	rs17008004	T	C	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	84834876	84834877	chr4:84834877:C:T	rs12500519	C	T	c	Msx3.mouse_homeodomain_1	11	1	-	7.101475448655951	5.9045244234805425	CCAATTGACACGAACTTA
chr4	85409664	85409665	chr4:85409665:C:A	rs409077	C	A	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	85409703	85409704	chr4:85409704:C:T	rs409040	C	T	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr4	85707893	85707894	chr4:85707894:G:A	rs73835536	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr4	86118162	86118163	chr4:86118163:G:A	rs73837408	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	8.33238998771073	8.662330940426827	GTAATCACTGAGGAATTA
chr4	86182447	86182448	chr4:86182448:C:T	rs17011428	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr4	86182485	86182486	chr4:86182486:A:G	rs17011432	A	G	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr4	86267777	86267778	chr4:86267778:T:C	rs114738271	T	C	t	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	86831034	86831035	chr4:86831035:T:C	rs12498606	T	C	C	Msx3.mouse_homeodomain_1	9	1	-	8.132278594238889	7.191734601852743	GCCATTATCATGCCATTG
chr4	87014698	87014699	chr4:87014699:G:C	chr4:87014699:G:C	G	C	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr4	87102717	87102718	chr4:87102718:T:C	rs342456	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	10.146062270388198	3.2385970334641914	CTAATTAAAAAAAAATTT
chr4	87130755	87130756	chr4:87130756:G:A	rs342468	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr4	87152025	87152026	chr4:87152026:A:G	rs13145898	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr4	87420689	87420690	chr4:87420690:T:C	rs6844206	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr4	87502760	87502761	chr4:87502761:T:C	rs4693167	T	C	t	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	87527772	87527773	chr4:87527773:C:T	rs7671077	C	T	C	Msx3.mouse_homeodomain_1	9	1	-	7.891822338812257	8.832366331198404	CTACTTATCGTCCAATCA
chr4	87896261	87896262	chr4:87896262:G:C	rs2169612	G	C	G	Msx3.mouse_homeodomain_1	7	1	+	7.262441090095878	6.982370080714716	CCAATTAGCTTCCAGTTT
chr4	87896278	87896279	chr4:87896279:G:A	rs2169611	G	A	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr4	87932990	87932991	chr4:87932991:A:T	rs72867675	A	T	a	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr4	87980731	87980732	chr4:87980732:A:G	rs7695531	A	G	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr4	88760796	88760797	chr4:88760797:A:G	rs11097195	A	G	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	88760840	88760841	chr4:88760841:C:T	rs113366588	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr4	88803811	88803812	chr4:88803812:C:G	rs10012528	C	G	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr4	88807725	88807726	chr4:88807726:A:G	rs2869949	A	G	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	89019840	89019841	chr4:89019841:G:A	rs6822256	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	89067558	89067559	chr4:89067559:A:G	rs28575566	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	7.444951792048253	7.115010839332155	ACAATGATGATGCCATTA
chr4	89070243	89070244	chr4:89070244:A:G	rs938266	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	89493310	89493311	chr4:89493311:A:G	rs62305086	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr4	89520292	89520293	chr4:89520293:G:T	rs7660434	G	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	89615230	89615231	chr4:89615231:C:T	rs80143845	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr4	90171786	90171787	chr4:90171787:A:G	rs17016596	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	9.556518844196336	7.039650216259257	CCACTTAAAAAGAAATCA
chr4	90419273	90419274	chr4:90419274:G:A	rs1216830874	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	91021736	91021737	chr4:91021737:T:G	rs1903497	T	G	G	Msx3.mouse_homeodomain_1	4	1	+	9.309491028848274	3.651501776898577	ACCATTAACCACGAATTA
chr4	92387709	92387710	chr4:92387710:T:C	rs74670140	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr4	93827480	93827481	chr4:93827481:T:G	rs112960971	T	G	G	Msx3.mouse_homeodomain_1	14	1	-	6.681548894804545	3.1205698565503566	CCAATCAGAAGCTCATTG
chr4	94307887	94307888	chr4:94307888:A:T	rs2016483	A	T	T	Msx3.mouse_homeodomain_1	14	1	+	8.783027109931457	4.456266758581902	CTAATCACAGGATAATTA
chr4	94334789	94334790	chr4:94334790:C:G	rs79911406	C	G	C	Msx3.mouse_homeodomain_1	7	1	-	9.19531991353769	8.915248904156526	GTAATTAGATAGTGATTT
chr4	94517463	94517464	chr4:94517464:A:T	rs2452568	A	T	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr4	94524037	94524038	chr4:94524038:A:T	rs2510784	A	T	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	94599934	94599935	chr4:94599935:A:G	rs66542996	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr4	94943793	94943794	chr4:94943794:A:G	rs13127704	A	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr4	95392216	95392217	chr4:95392217:C:T	rs17023728	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr4	95477447	95477448	chr4:95477448:G:C	rs73838878	G	C	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr4	95627061	95627062	chr4:95627062:A:C	rs35403357	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	8.295387380365728	5.411194323888352	GCAATAAAACTACATTTA
chr4	95701998	95701999	chr4:95701999:T:A	rs10006440	T	A	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	97662491	97662492	chr4:97662492:C:A	rs1911789	C	A	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	98148144	98148145	chr4:98148145:G:C	rs13147921	G	C	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	98618346	98618347	chr4:98618347:T:G	rs2866015	T	G	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr4	98619921	98619922	chr4:98619922:A:G	rs11946198	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr4	98619942	98619943	chr4:98619943:T:C	rs11941880	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	8.099437753798014	4.974488600204159	ACCCTTAGGATCTAATTA
chr4	98626354	98626355	chr4:98626355:A:C	rs7682381	A	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr4	99459130	99459131	chr4:99459131:C:T	rs1561841	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.706677765658477	6.261555102091996	TCATTTAGCTACCGATTA
chr4	99508168	99508169	chr4:99508169:A:G	rs78625750	A	G	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr4	99618738	99618739	chr4:99618739:T:C	rs1032355	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.221193120737095	3.6330989017139457	GTGATGAAGTGCCAATTA
chr4	100618337	100618338	chr4:100618338:C:T	rs66657830	C	T	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr4	100804632	100804633	chr4:100804633:C:T	rs34370404	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	101061071	101061072	chr4:101061072:G:C	rs74569968	G	C	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr4	101254940	101254941	chr4:101254941:C:T	rs2850962	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	101254979	101254980	chr4:101254980:C:T	rs2583407	C	T	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr4	101775061	101775062	chr4:101775062:A:G	rs10003889	A	G	a	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	101972812	101972813	chr4:101972813:A:G	rs2850375	A	G	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr4	102223553	102223554	chr4:102223554:C:T	rs151408	C	T	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr4	102639948	102639949	chr4:102639949:T:C	rs2293995	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	103567006	103567007	chr4:103567007:T:A	rs418405	T	A	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	103567009	103567010	chr4:103567010:A:G	rs139571249	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr4	103567030	103567031	chr4:103567031:T:C	rs447619	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	9.489720680579772	2.5822554436557654	GTAATTAACTAGCCATAA
chr4	103593794	103593795	chr4:103593795:C:G	rs28394887	C	G	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr4	104033165	104033166	chr4:104033166:G:A	rs113080329	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr4	104495174	104495175	chr4:104495175:C:T	rs191049022	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr4	105127133	105127134	chr4:105127134:T:C	rs17035289	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	9.885116362473045	2.9776511255490417	TAGATTAGTAAGCAATTA
chr4	105606007	105606008	chr4:105606008:A:G	rs4324547	A	G	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	105619540	105619541	chr4:105619541:A:G	rs78277158	A	G	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr4	107612903	107612904	chr4:107612904:G:T	rs2672486	G	T	t	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr4	107871578	107871579	chr4:107871579:A:G	rs7671347	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr4	107993421	107993422	chr4:107993422:T:C	rs4521419	T	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	108045361	108045362	chr4:108045362:C:T	rs11725638	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	108360514	108360515	chr4:108360515:C:T	rs150946219	C	T	C	Msx3.mouse_homeodomain_1	3	1	+	7.497301258746793	5.2501252831316005	GCCCTTACCAAGCAATTT
chr4	108360534	108360535	chr4:108360535:G:A	rs6827329	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr4	108787620	108787621	chr4:108787621:A:G	rs7654111	A	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr4	108789571	108789572	chr4:108789572:C:T	rs13137797	C	T	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr4	108933087	108933088	chr4:108933088:T:C	rs72668384	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr4	109023966	109023967	chr4:109023967:G:A	rs11098025	G	A	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr4	109233206	109233207	chr4:109233207:A:G	rs6533420	A	G	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	109274786	109274787	chr4:109274787:A:G	rs11737104	A	G	A	Msx3.mouse_homeodomain_1	2	1	-	7.793616209946799	8.566456386688694	GCTATTAAATATCCATTG
chr4	109541746	109541747	chr4:109541747:T:A	rs13134239	T	A	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr4	109729183	109729184	chr4:109729184:A:C	rs11737069	A	C	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	109913763	109913764	chr4:109913764:A:G	rs11098053	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr4	110473336	110473337	chr4:110473337:C:A	rs6830159	C	A	C	Msx3.mouse_homeodomain_1	1	1	+	9.486335039773508	6.786045662833042	GCAATCAATAAACATTTA
chr4	110628632	110628633	chr4:110628633:T:C	rs1054575400	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	7.2207193485715475	7.338422997096542	GCCATTAATTACCCATTC
chr4	111362741	111362742	chr4:111362742:T:C	rs9995499	T	C	T	Msx3.mouse_homeodomain_1	9	1	-	9.67351383382831	8.732969841442166	GTAATCACAAATAAATTA
chr4	111399704	111399705	chr4:111399705:C:T	rs113737881	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	111540302	111540303	chr4:111540303:T:C	rs17043324	T	C	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr4	111642146	111642147	chr4:111642147:G:A	rs79260461	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr4	112083220	112083221	chr4:112083221:T:G	rs17044235	T	G	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr4	112083234	112083235	chr4:112083235:T:A	rs1836803	T	A	T	Msx3.mouse_homeodomain_1	0	1	+	8.533275907019085	8.61570860598913	TTACTTAAAAACCAATGA
chr4	112330090	112330091	chr4:112330091:G:A	rs4834262	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	112453166	112453167	chr4:112453167:C:T	rs6815237	C	T	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr4	112455970	112455971	chr4:112455971:G:T	rs231266	G	T	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr4	112557978	112557979	chr4:112557979:G:A	rs6533627	G	A	a	Msx3.mouse_homeodomain_1	10	1	+	10.518799046180877	11.595390217117352	CTACTTACAAGCTAATTA
chr4	113154059	113154060	chr4:113154060:A:G	rs10516592	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr4	113291810	113291811	chr4:113291811:G:A	rs7677909	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	7.595657588234441	8.536201580620588	CCGATTGTGGAGAAATTA
chr4	113619798	113619799	chr4:113619799:T:C	rs12505711	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	10.072602763535578	6.1031717871667	GCAATTATTAAACAATGA
chr4	113619805	113619806	chr4:113619806:T:A	rs10012931	T	A	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr4	113976819	113976820	chr4:113976820:C:T	rs118135970	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	114121361	114121362	chr4:114121362:A:C	rs10022007	A	C	C	Msx3.mouse_homeodomain_1	4	1	-	7.802731917303002	2.1447426653533035	TCAGTTAATGAGGAATTA
chr4	114479771	114479772	chr4:114479772:A:G	rs7685549	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr4	114582805	114582806	chr4:114582806:A:C	rs6813283	A	C	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr4	114967459	114967460	chr4:114967460:T:C	rs279535	T	C	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr4	114989099	114989100	chr4:114989100:A:G	rs2028481	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr4	116530298	116530299	chr4:116530299:T:C	rs1425624	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.848496612565103	4.260402393541953	GGAATCAATACCTAATTA
chr4	118059622	118059623	chr4:118059623:C:A	rs76441614	C	A	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	118225159	118225160	chr4:118225160:T:C	rs618177	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.421655066698374	3.8335608476752245	CATATTAATCCCCAATTA
chr4	118360452	118360453	chr4:118360453:G:T	rs72670213	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr4	118410113	118410114	chr4:118410114:C:G	rs12647756	C	G	c	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	119873229	119873230	chr4:119873230:C:T	rs2174169	C	T	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	120886405	120886406	chr4:120886406:A:T	rs12499872	A	T	A	Msx3.mouse_homeodomain_1	10	1	-	8.37768722200364	8.87125874597876	GCAGTTATTATGTGATTA
chr4	121010314	121010315	chr4:121010315:T:C	rs6819558	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr4	121677479	121677480	chr4:121677480:A:G	rs2306411	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	121719847	121719848	chr4:121719848:A:G	rs12508617	A	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr4	122003183	122003184	chr4:122003184:G:A	rs6534331	G	A	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr4	122906886	122906887	chr4:122906887:T:G	rs34848742	T	G	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr4	122906888	122906889	chr4:122906889:C:T	rs34051043	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr4	123594356	123594357	chr4:123594357:G:C	rs2589836	G	C	C	Msx3.mouse_homeodomain_1	10	1	-	8.60791675647003	9.06886940938239	TCAATTTTGACGTAATTA
chr4	123617750	123617751	chr4:123617751:G:C	rs2553381	G	C	g	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr4	123622013	123622014	chr4:123622014:T:C	rs11723511	T	C	t	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr4	123855200	123855201	chr4:123855201:C:T	rs78509066	C	T	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr4	123938341	123938342	chr4:123938342:T:C	rs10010854	T	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr4	124029925	124029926	chr4:124029926:T:C	rs35976398	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr4	124112044	124112045	chr4:124112045:A:C	chr4:124112045:A:C	A	C	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	124113062	124113063	chr4:124113063:C:T	rs13152069	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr4	124433093	124433094	chr4:124433094:A:C	rs72921112	A	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr4	124591745	124591746	chr4:124591746:C:G	rs13104872	C	G	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr4	125091411	125091412	chr4:125091412:C:T	rs74769110	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	125891919	125891920	chr4:125891920:C:A	rs9307579	C	A	C	Msx3.mouse_homeodomain_1	8	1	+	8.850128563867493	9.769695388500047	TTAATTATCTGACCATTA
chr4	126056701	126056702	chr4:126056702:T:C	rs28588680	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	10.341458908488622	5.7533646894654735	GTACTTAATTTCAAATTA
chr4	126966008	126966009	chr4:126966009:A:T	rs76207547	A	T	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr4	127236727	127236728	chr4:127236728:G:C	rs7655646	G	C	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	127504944	127504945	chr4:127504945:G:A	rs12506112	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr4	128060035	128060036	chr4:128060036:T:G	rs72618835	T	G	G	Msx3.mouse_homeodomain_1	9	1	-	9.23889466632449	7.932664362380163	GCAATTAAAAGGGGATTG
chr4	128456935	128456936	chr4:128456936:C:T	rs2133464	C	T	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr4	128639562	128639563	chr4:128639563:G:A	rs115756908	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	7.081827621507101	5.371597202523392	CCAATTGAAAACCACTGA
chr4	129278973	129278974	chr4:129278974:T:C	rs4484315	T	C	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	130538784	130538785	chr4:130538785:T:C	rs1459308	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	11.024212893274168	9.980240593400453	GTAATTTATATGTAATTA
chr4	131258201	131258202	chr4:131258202:C:G	rs6838335	C	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr4	131774646	131774647	chr4:131774647:T:A	rs1054954	T	A	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr4	132446499	132446500	chr4:132446500:G:A	rs1827133	G	A	g	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	133996870	133996871	chr4:133996871:C:A	rs147340323	C	A	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	134142466	134142467	chr4:134142467:G:T	rs1494982	G	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	134301664	134301665	chr4:134301665:A:T	rs10033808	A	T	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	134341175	134341176	chr4:134341176:C:G	rs1017926	C	G	G	Msx3.mouse_homeodomain_1	6	1	-	9.860696976379963	8.057758396839358	CAAATTGAAAATTAATTA
chr4	136011744	136011745	chr4:136011745:C:A	rs10006342	C	A	A	Msx3.mouse_homeodomain_1	15	1	-	7.413410086338323	14.320875323262328	GGAATTAAAGACCAAGTA
chr4	136496653	136496654	chr4:136496654:G:C	rs58238824	G	C	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr4	137361954	137361955	chr4:137361955:G:C	rs6810997	G	C	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	137774652	137774653	chr4:137774653:G:A	rs28622870	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	137857487	137857488	chr4:137857488:T:C	rs28379650	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	138090158	138090159	chr4:138090159:G:C	rs114607013	G	C	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr4	138657248	138657249	chr4:138657249:C:T	rs56029356	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	8.363822732310918	10.421096911217113	GGAATTGAGCAGCGATTA
chr4	139019048	139019049	chr4:139019049:A:T	rs112393494	A	T	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr4	139019054	139019055	chr4:139019055:T:A	rs13104571	T	A	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	139243958	139243959	chr4:139243959:T:C	rs542454795	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	9.900797125819448	8.856824825945733	GCCATGAAACTCCAATTA
chr4	139243977	139243978	chr4:139243978:A:C	rs72724777	A	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	139826634	139826635	chr4:139826635:C:T	rs6811597	C	T	c	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr4	140095435	140095436	chr4:140095436:G:A	rs56255831	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	140525069	140525070	chr4:140525070:C:T	rs79650369	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	140616967	140616968	chr4:140616968:G:T	rs12500660	G	T	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr4	140876382	140876383	chr4:140876383:G:A	rs11942518	G	A	g	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr4	140929140	140929141	chr4:140929141:G:A	rs55829030	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr4	140974421	140974422	chr4:140974422:C:T	rs7692524	C	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	142359263	142359264	chr4:142359264:A:T	rs977619	A	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr4	142378046	142378047	chr4:142378047:T:A	rs78661502	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	9.574252692363917	6.20346649648512	ACAATAGTAGTGCAATTA
chr4	143023872	143023873	chr4:143023873:T:C	rs7685774	T	C	t	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	143216205	143216206	chr4:143216206:A:G	rs11725565	A	G	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr4	143342089	143342090	chr4:143342090:C:G	rs112182893	C	G	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr4	143618620	143618621	chr4:143618621:T:C	rs1018091	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr4	145546374	145546375	chr4:145546375:T:G	chr4:145546375:T:G	T	G	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	145740862	145740863	chr4:145740863:A:C	rs4580670	A	C	A	Msx3.mouse_homeodomain_1	2	1	+	9.096998061829911	6.7144106203591845	TTAATAAAAAACAGATTA
chr4	145768664	145768665	chr4:145768665:G:A	rs7671215	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr4	146138282	146138283	chr4:146138283:A:G	rs13101861	A	G	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr4	146325104	146325105	chr4:146325105:C:T	rs62327855	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr4	146486222	146486223	chr4:146486223:C:A	rs4835039	C	A	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr4	148361564	148361565	chr4:148361565:T:C	rs72729950	T	C	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr4	148528072	148528073	chr4:148528073:C:A	rs147597438	C	A	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr4	148573361	148573362	chr4:148573362:G:A	rs977064	G	A	A	Msx3.mouse_homeodomain_1	17	1	+	10.684827976839316	13.25298757402252	TCAATCAGAATGCAATTG
chr4	149110628	149110629	chr4:149110629:A:G	rs544610568	A	G	A	Msx3.mouse_homeodomain_1	11	1	+	9.751952470734707	10.948903495910116	ACAATAAGGAAATAATTA
chr4	149322077	149322078	chr4:149322078:A:T	rs72724014	A	T	A	Msx3.mouse_homeodomain_1	3	1	+	12.192798872883877	7.065448532735789	GCAATTAATAAATAATTG
chr4	149523214	149523215	chr4:149523215:C:T	rs72726121	C	T	C	Msx3.mouse_homeodomain_1	10	1	+	6.834080698444326	7.878052998318041	ACCCTCACAACCCAATTA
chr4	150208712	150208713	chr4:150208713:G:A	rs62346572	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	150348153	150348154	chr4:150348154:A:T	rs13130871	A	T	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr4	150578287	150578288	chr4:150578288:A:G	rs10022844	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	10.168580907282081	5.580486688258931	CCCATTATTCTTCAATTA
chr4	150875531	150875532	chr4:150875532:C:T	rs115786319	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr4	151779932	151779933	chr4:151779933:T:G	rs2048433	T	G	T	Msx3.mouse_homeodomain_1	7	1	-	8.39788717622606	7.008000629521303	GCCTTTAAATTTCAATTA
chr4	151779957	151779958	chr4:151779958:T:C	rs1511170	T	C	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr4	151799333	151799334	chr4:151799334:C:T	rs962568243	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	7.837971179101387	7.014380434841208	CCAGTTAAGAGGCTATTA
chr4	151865315	151865316	chr4:151865316:G:T	rs17275898	G	T	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr4	152047219	152047220	chr4:152047220:G:A	rs10004020	G	A	A	Msx3.mouse_homeodomain_1	1	1	-	7.471993726911598	6.624150856030913	TCAATCATGAGCCATTTA
chr4	152080509	152080510	chr4:152080510:T:C	rs1318845	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.499613936672995	2.911519717649844	TCCATCAGAATGCAATTT
chr4	152175943	152175944	chr4:152175944:T:C	rs17361412	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	152500968	152500969	chr4:152500969:T:C	rs546153195	T	C	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr4	152599243	152599244	chr4:152599244:T:C	rs80221030	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	10.805531772222409	6.836100795853532	CCAATTAAATTCCCCTTA
chr4	152846934	152846935	chr4:152846935:G:A	rs1399401128	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	153072285	153072286	chr4:153072286:T:G	rs4696393	T	G	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr4	153851793	153851794	chr4:153851794:C:T	rs4696511	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr4	153906308	153906309	chr4:153906309:C:T	rs541067914	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr4	153933438	153933439	chr4:153933439:A:G	rs4411966	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	8.90915681961896	4.321062600595809	GTGATTAGAGGCCAATCA
chr4	153989749	153989750	chr4:153989750:A:G	rs75017813	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr4	155583159	155583160	chr4:155583160:A:G	rs59342321	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	11.335660453375041	9.278386274468847	GGAATTATGTACTAATTA
chr4	155653578	155653579	chr4:155653579:C:T	rs56043124	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	155805378	155805379	chr4:155805379:T:C	rs17313779	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	10.746369941948238	9.636554404624647	CTCATTAATGTTCAATTA
chr4	155807084	155807085	chr4:155807085:T:G	rs143925281	T	G	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr4	155982691	155982692	chr4:155982692:T:A	rs12507353	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	10.27390758419388	5.9471472328443244	GCCATTAAAAAACAATTC
chr4	156139507	156139508	chr4:156139508:A:C	rs6536147	A	C	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr4	156477614	156477615	chr4:156477615:T:G	rs6852753	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	7.9767416914565805	1.0692764545325748	TCAATTAGGAAGCAGTTG
chr4	156596498	156596499	chr4:156596499:T:C	rs939690	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	10.067019477415041	11.175529032579785	ACAATAAGATTCAAATTA
chr4	157146444	157146445	chr4:157146445:A:G	rs777402727	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr4	158298085	158298086	chr4:158298086:T:C	rs76367679	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr4	159197305	159197306	chr4:159197306:A:G	rs9997385	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	6.946749595551178	0.8482039156820442	GCCATTAAGAAACAACTA
chr4	159284079	159284080	chr4:159284080:A:G	rs55837961	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr4	159413808	159413809	chr4:159413809:C:T	rs139988339	C	T	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr4	159600327	159600328	chr4:159600328:T:C	rs2000886	T	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr4	159764661	159764662	chr4:159764662:G:C	rs7675486	G	C	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr4	159891413	159891414	chr4:159891414:A:G	rs62333046	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.688036671993629	1.7805714350696236	CAAATTAAATAACAATGA
chr4	159984859	159984860	chr4:159984860:T:C	rs71609064	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.885300383728423	1.786754703859292	GCTATTACCTTGCTATTA
chr4	160214152	160214153	chr4:160214153:A:G	rs35772545	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr4	160316058	160316059	chr4:160316059:C:G	rs4286479	C	G	c	Msx3.mouse_homeodomain_1	3	1	+	8.628320643858306	7.539064032022327	TCACTAATTTTCCAATTA
chr4	160468611	160468612	chr4:160468612:A:G	rs62333080	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr4	161651929	161651930	chr4:161651930:C:T	rs72689103	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr4	162005211	162005212	chr4:162005212:G:T	rs17041863	G	T	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr4	162015566	162015567	chr4:162015567:T:G	rs73861012	T	G	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr4	162058756	162058757	chr4:162058757:T:A	rs77487691	T	A	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr4	162241944	162241945	chr4:162241945:A:T	rs4501179	A	T	a	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr4	162401931	162401932	chr4:162401932:T:C	rs72690791	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr4	162535216	162535217	chr4:162535217:A:G	rs75426244	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr4	163613795	163613796	chr4:163613796:C:G	rs111841614	C	G	C	Msx3.mouse_homeodomain_1	9	1	+	10.64169914827902	11.007385459837206	CTAATCAAACAGCCATTA
chr4	163954600	163954601	chr4:163954601:T:G	rs35624441	T	G	t	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr4	164718954	164718955	chr4:164718955:T:A	rs12644159	T	A	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr4	165512921	165512922	chr4:165512922:C:T	rs6847558	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr4	165519060	165519061	chr4:165519061:C:A	rs72705414	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr4	165906652	165906653	chr4:165906653:T:A	rs7698885	T	A	T	Msx3.mouse_homeodomain_1	7	1	-	11.22103468578553	10.161089091796871	ATAATTAATCTCAAATTA
chr4	166066598	166066599	chr4:166066599:G:A	rs6536943	G	A	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	166733808	166733809	chr4:166733809:C:G	rs6846930	C	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr4	167127748	167127749	chr4:167127749:A:G	rs35065151	A	G	A	Msx3.mouse_homeodomain_1	10	1	+	11.89781981024861	10.821228639312135	TTAATTGGTAACCAATTA
chr4	167218228	167218229	chr4:167218229:A:G	rs9312517	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	9.573539161190908	2.6660739242669034	GCTATTAACACACGATTA
chr4	167218263	167218264	chr4:167218264:C:A	rs371289259	C	A	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr4	167622959	167622960	chr4:167622960:T:C	rs1518182	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.690879657386337	0.7834144204623323	CCAATCAGACTGAAATTG
chr4	167933910	167933911	chr4:167933911:T:G	rs35155269	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	9.475320581445404	7.09273313997468	GCAGTTAAAAATCAATTT
chr4	168125556	168125557	chr4:168125557:G:A	rs17635986	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr4	168409693	168409694	chr4:168409694:T:C	rs17540317	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	168409735	168409736	chr4:168409736:C:T	rs185751288	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr4	168718514	168718515	chr4:168718515:A:G	rs143785777	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	7.952212711156251	5.435344083219172	TCAGTTAGCTAGCCATTA
chr4	168788146	168788147	chr4:168788147:A:G	rs62334301	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr4	169048014	169048015	chr4:169048015:T:C	rs7693982	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr4	169248906	169248907	chr4:169248907:T:C	rs76139079	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	169343206	169343207	chr4:169343207:T:C	chr4:169343207:T:C	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr4	169661153	169661154	chr4:169661154:C:T	rs536637210	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr4	169757530	169757531	chr4:169757531:G:A	rs116596756	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr4	169899013	169899014	chr4:169899014:G:A	rs62344557	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr4	170004660	170004661	chr4:170004661:A:G	rs777531664	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr4	170047876	170047877	chr4:170047877:C:T	rs9997355	C	T	-	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr4	170047886	170047887	chr4:170047887:A:T	rs1904822	A	T	-	Msx3.mouse_homeodomain_1	6	1	+	9.73869536433449	6.146413157221966	ACAATTAAAAAAAAATAA
chr4	170047899	170047900	chr4:170047900:T:A	rs550454445	T	A	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr4	170674291	170674292	chr4:170674292:T:G	rs4593091	T	G	G	Msx3.mouse_homeodomain_1	17	1	-	10.196045172764443	5.609188591637933	CCAATTACAATCCAAATA
chr4	172033909	172033910	chr4:172033910:A:T	rs12647912	A	T	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr4	172287503	172287504	chr4:172287504:C:T	rs2134661	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	9.546257955117458	9.428554306592464	ATAATTTACAACAAATTA
chr4	173252558	173252559	chr4:173252559:C:G	chr4:173252559:C:G	C	G	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr4	173369200	173369201	chr4:173369201:G:T	rs7696310	G	T	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr4	173434342	173434343	chr4:173434343:T:C	rs2877784	T	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr4	173476623	173476624	chr4:173476624:C:A	rs4146858	C	A	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr4	173766089	173766090	chr4:173766090:G:A	rs112559832	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr4	174030888	174030889	chr4:174030889:T:C	rs2332798	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr4	174118718	174118719	chr4:174118719:A:C	rs2332759	A	C	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr4	174134455	174134456	chr4:174134456:C:T	rs2196382	C	T	c	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr4	174217908	174217909	chr4:174217909:G:A	rs954927	G	A	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr4	174521670	174521671	chr4:174521671:T:C	rs1365613	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr4	174550689	174550690	chr4:174550690:C:T	rs78578475	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	7.2396531868386225	5.794530523272139	CCAAGTAGAGAGCAATCA
chr4	174718287	174718288	chr4:174718288:T:C	rs7658547	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr4	175812427	175812428	chr4:175812428:C:T	rs887935022	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr4	176576366	176576367	chr4:176576367:A:T	rs1449743	A	T	T	Msx3.mouse_homeodomain_1	3	1	+	7.961338530360961	2.8339881902128723	ACAATTCTAGAGCAATCA
chr4	176576390	176576391	chr4:176576391:T:G	rs17063321	T	G	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr4	177153452	177153453	chr4:177153453:T:C	rs17666618	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr4	177230271	177230272	chr4:177230272:G:A	rs9999417	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	177310658	177310659	chr4:177310659:C:A	chr4:177310659:C:A	C	A	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	177312590	177312591	chr4:177312591:G:T	rs12648231	G	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr4	177442455	177442456	chr4:177442456:C:G	rs780075139	C	G	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr4	178665178	178665179	chr4:178665179:C:A	rs7654244	C	A	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr4	179071038	179071039	chr4:179071039:A:T	rs10003911	A	T	-	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr4	179272339	179272340	chr4:179272340:C:G	rs6827278	C	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr4	179415538	179415539	chr4:179415539:T:C	rs4861779	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr4	179840475	179840476	chr4:179840476:A:C	rs143500771	A	C	.	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr4	180696625	180696626	chr4:180696626:G:A	rs11938665	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr4	181167232	181167233	chr4:181167233:A:G	rs190143262	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr4	181849477	181849478	chr4:181849478:A:T	rs78865612	A	T	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr4	182049826	182049827	chr4:182049827:A:C	rs28637562	A	C	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr4	182394707	182394708	chr4:182394708:A:C	rs72699960	A	C	A	Msx3.mouse_homeodomain_1	1	1	-	11.48839913176885	9.071893145621223	ATAATTAAAAATCAATTT
chr4	182496427	182496428	chr4:182496428:G:A	rs978520	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr4	182555093	182555094	chr4:182555094:G:A	rs7674760	G	A	G	Msx3.mouse_homeodomain_1	3	1	-	7.402330478931435	5.155154503316243	GCACTCACATGGCCATTA
chr4	182604860	182604861	chr4:182604861:A:G	rs149781538	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr4	182877130	182877131	chr4:182877131:G:A	rs115425433	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr4	183295932	183295933	chr4:183295933:A:G	rs10003916	A	G	G	Msx3.mouse_homeodomain_1	0	1	-	8.531922099778805	9.355512844038985	TCACTTACAAGGCAATTT
chr4	183366019	183366020	chr4:183366020:T:C	rs6828503	T	C	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr4	183542515	183542516	chr4:183542516:G:A	rs75633923	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr4	183542541	183542542	chr4:183542542:A:G	rs7699347	A	G	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr4	183578737	183578738	chr4:183578738:C:T	rs74289570	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr4	183771069	183771070	chr4:183771070:C:A	rs58613332	C	A	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr4	183830692	183830693	chr4:183830693:C:G	rs115606475	C	G	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr4	184316466	184316467	chr4:184316467:A:T	rs4862360	A	T	t	Msx3.mouse_homeodomain_1	14	1	+	10.513413780262807	6.186653428913251	GTAATTAAAAAAAAATTT
chr4	184339693	184339694	chr4:184339694:A:G	rs28765229	A	G	a	Msx3.mouse_homeodomain_1	5	1	-	10.932185650086069	8.539199907575568	CTCATTATATGCTAATTA
chr4	184362124	184362125	chr4:184362125:T:G	rs2310007	T	G	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr4	184362126	184362127	chr4:184362127:A:T	rs2310006	A	T	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr4	184380410	184380411	chr4:184380411:G:A	rs13136862	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	8.98058808391134	7.535465420344857	ACACTTACAAAACCATTA
chr4	184593275	184593276	chr4:184593276:T:C	rs1976956	T	C	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr4	184802656	184802657	chr4:184802657:C:T	rs55818612	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr4	184807684	184807685	chr4:184807685:T:C	rs902177	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr4	184824440	184824441	chr4:184824441:G:A	chr4:184824441:G:A	G	A	G	Msx3.mouse_homeodomain_1	3	1	-	9.89551605644396	7.648340080828768	ATACTTAAAAAAAAATTA
chr4	184902733	184902734	chr4:184902734:T:C	rs6818135	T	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr4	185272730	185272731	chr4:185272731:A:G	rs116363070	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.8599370432816995	1.7613913634125642	ATAATTAGGGTGCAATGA
chr4	185744224	185744225	chr4:185744225:A:G	rs34609507	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.853895659534558	5.88446468316568	TCAATTACACAATGATTA
chr4	185871028	185871029	chr4:185871029:C:G	rs6853037	C	G	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr4	185871060	185871061	chr4:185871061:T:C	rs6830105	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr4	186038570	186038571	chr4:186038571:A:G	rs79002380	A	G	a	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr4	186652763	186652764	chr4:186652764:T:C	rs328431	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr4	186669791	186669792	chr4:186669792:C:T	rs10025804	C	T	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr4	187182782	187182783	chr4:187182783:C:T	rs10000307	C	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr4	187184637	187184638	chr4:187184638:A:C	rs931370	A	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr4	187813931	187813932	chr4:187813932:T:C	rs6829286	T	C	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr4	188032360	188032361	chr4:188032361:A:G	rs2889361	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr4	188418947	188418948	chr4:188418948:C:T	rs12505481	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	7.651112090700971	7.981053043417069	TAAATTACGGAGCACTTA
chr4	188640029	188640030	chr4:188640030:T:C	rs11937773	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr4	189100527	189100528	chr4:189100528:T:A	rs10461312	T	A	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr4	189609967	189609968	chr4:189609968:G:T	rs9790544	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	11.199806391103191	8.688497631334368	TCAATAAGAATTCAATTA
chr5	219433	219434	chr5:219434:A:G	rs6859848	A	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr5	269851	269852	chr5:269852:C:A	rs12173015	C	A	A	Msx3.mouse_homeodomain_1	1	1	+	7.795717003280337	5.095427626339869	ACCATTAGAAACCACTTG
chr5	615733	615734	chr5:615734:T:C	rs1709538	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	777017	777018	chr5:777018:A:G	rs447545	A	G	a	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr5	777041	777042	chr5:777042:G:T	rs149676461	G	T	g	Msx3.mouse_homeodomain_1	12	1	-	7.134474359237645	4.62316559946882	CCAATAACCCACCAATTC
chr5	1368881	1368882	chr5:1368882:A:G	rs461193	A	G	A	Msx3.mouse_homeodomain_1	0	1	-	7.375369798159462	8.198960542419641	TCAATTACGTGCAACTTA
chr5	1494323	1494324	chr5:1494324:C:T	rs40180	C	T	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	1631095	1631096	chr5:1631096:A:G	rs80173970	A	G	-	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	2113240	2113241	chr5:2113241:G:A	rs143819623	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	2470813	2470814	chr5:2470814:A:G	rs116526789	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr5	2564886	2564887	chr5:2564887:T:A	rs1126232	T	A	T	Msx3.mouse_homeodomain_1	5	1	+	8.076786905410934	5.255384858254555	GTAAATACACACCAATTA
chr5	2731775	2731776	chr5:2731776:C:T	rs2047382	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr5	3103992	3103993	chr5:3103993:G:T	rs191275380	G	T	G	Msx3.mouse_homeodomain_1	17	1	+	7.665891350582917	6.863264751887321	GAAATTAATTTGCACTTG
chr5	3118687	3118688	chr5:3118688:C:T	rs769109	C	T	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr5	3166774	3166775	chr5:3166775:T:C	rs2453350	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr5	3166786	3166787	chr5:3166787:T:C	rs2453349	T	C	C	Msx3.mouse_homeodomain_1	5	1	+	7.866779474549719	5.4737937320392165	TCCATTATGGTGGAATTA
chr5	3234421	3234422	chr5:3234422:C:T	rs61539501	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.605821177486105	7.1606985139196215	GCAATAAGATTTCAATTT
chr5	3428810	3428811	chr5:3428811:T:C	rs17683976	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.05675204383288	4.087321067464002	GCCATTACAACGCAATGA
chr5	3430886	3430887	chr5:3430887:A:G	rs12658228	A	G	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr5	3681949	3681950	chr5:3681950:G:T	rs190609158	G	T	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr5	4137502	4137503	chr5:4137503:A:C	rs1348717088	A	C	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr5	4137540	4137541	chr5:4137541:T:C	rs17665119	T	C	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr5	4627028	4627029	chr5:4627029:T:G	rs10475263	T	G	T	Msx3.mouse_homeodomain_1	12	1	+	7.3437450388042675	5.2894846837545915	GCAATCAGGGGGTAATCA
chr5	5141122	5141123	chr5:5141123:T:C	rs270203	T	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	5263038	5263039	chr5:5263039:T:C	rs2913657	T	C	.	Msx3.mouse_homeodomain_1	3	1	-	8.318998861323667	4.349567884954787	CCAATTAAAGCACAAATA
chr5	5586020	5586021	chr5:5586021:T:C	rs75333766	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	5754675	5754676	chr5:5754676:A:G	rs425855	A	G	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	5821404	5821405	chr5:5821405:T:C	rs10512811	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.11990267662678	5.150471700257903	ATAATTTATACACAATTA
chr5	6013655	6013656	chr5:6013656:G:A	rs466643	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr5	6013672	6013673	chr5:6013673:C:T	rs1428379	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	7.718954632070953	7.601250983545957	ATAATTGACAGGCATTTA
chr5	6013695	6013696	chr5:6013696:T:G	rs461013	T	G	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr5	6244932	6244933	chr5:6244933:T:G	rs17824403	T	G	T	Msx3.mouse_homeodomain_1	5	1	+	9.115653561123548	4.673071783656382	GAAATTACATTGCATTTA
chr5	6457449	6457450	chr5:6457450:C:T	rs2651945	C	T	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	6575173	6575174	chr5:6575174:A:G	rs497404	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	6575205	6575206	chr5:6575206:C:G	rs111786908	C	G	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr5	6638531	6638532	chr5:6638532:G:T	rs521293	G	T	G	Msx3.mouse_homeodomain_1	0	1	-	7.370404375714052	6.629246330423917	CCAATTGACTTCTAATGA
chr5	6804543	6804544	chr5:6804544:A:G	rs116038062	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr5	6905132	6905133	chr5:6905133:A:T	rs1390649	A	T	T	Msx3.mouse_homeodomain_1	14	1	+	10.16888156504234	5.842121213692785	ATAATTAACAAGACATTA
chr5	7244988	7244989	chr5:7244989:G:A	rs4454035	G	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr5	7903178	7903179	chr5:7903179:G:A	rs74522858	G	A	G	Msx3.mouse_homeodomain_1	9	1	-	7.6471108755043185	8.539199907575568	CTCATCATACGCTAATTA
chr5	8521053	8521054	chr5:8521054:C:T	rs374142	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr5	8521105	8521106	chr5:8521106:G:A	rs79050584	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr5	9083435	9083436	chr5:9083436:C:T	rs10050942	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	9440685	9440686	chr5:9440686:A:G	rs117543215	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.34388211382986	4.755787894806711	AAGATTGAATACCAATTA
chr5	9456841	9456842	chr5:9456842:A:G	rs143403143	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr5	9546876	9546877	chr5:9546877:T:C	rs1706986	T	C	C	Msx3.mouse_homeodomain_1	11	1	+	8.645943067702884	10.356173486686593	CCAATTCTGTGTCAATTA
chr5	9546882	9546883	chr5:9546883:A:T	rs1614229	A	T	A	Msx3.mouse_homeodomain_1	17	1	+	8.645943067702884	5.275156871824086	CCAATTCTGTGTCAATTA
chr5	10213078	10213079	chr5:10213079:C:T	rs6868531	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr5	10701401	10701402	chr5:10701402:A:G	rs3756407	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	9.026272805338015	8.085728812951869	TCAATAAGGAACCAATTT
chr5	10832443	10832444	chr5:10832444:A:C	rs78279107	A	C	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	10837049	10837050	chr5:10837050:T:G	rs79307238	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	9.333259833414324	4.746403252287816	TCAATGAATAGCTAATTA
chr5	11956598	11956599	chr5:11956599:T:C	rs1458480	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	13214739	13214740	chr5:13214740:C:T	rs28207	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr5	13214746	13214747	chr5:13214747:T:C	rs28283	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr5	13350905	13350906	chr5:13350906:A:G	rs7715357	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr5	13427975	13427976	chr5:13427976:A:G	rs55797707	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr5	13498753	13498754	chr5:13498754:A:T	rs230048	A	T	T	Msx3.mouse_homeodomain_1	4	1	-	11.492005247445324	4.586983701709241	ATAATTATGTAGAAATTA
chr5	13822145	13822146	chr5:13822146:T:C	rs1867678	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.9944257724779915	1.0869605355539869	CCACTTGCAGACAAATTA
chr5	13917297	13917298	chr5:13917298:T:C	rs745712430	T	C	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	14034962	14034963	chr5:14034963:T:C	rs72736965	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr5	14034969	14034970	chr5:14034970:C:T	rs6870773	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	6.2658134657551345	5.068862440579725	GCCATTAGCAGGCACTCA
chr5	14114058	14114059	chr5:14114059:G:A	rs60867996	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	6.240490589680012	7.247039922525221	GCACTCACGTGCCAATCA
chr5	14166989	14166990	chr5:14166990:C:T	rs17299045	C	T	C	Msx3.mouse_homeodomain_1	2	1	-	7.294431964477417	9.811300592414497	GCGCTTGAGGACTAATTA
chr5	14187659	14187660	chr5:14187660:C:A	rs26059	C	A	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr5	14448051	14448052	chr5:14448052:G:C	rs27113	G	C	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	14806444	14806445	chr5:14806445:G:C	rs115700180	G	C	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr5	14873144	14873145	chr5:14873145:C:G	rs835158	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	8.117093352746155	4.852744495717841	CCGATTAACTCACAATTT
chr5	15007692	15007693	chr5:15007693:A:C	rs6867275	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	11.099061688459892	6.025528912350564	TTAATTAAAGGCCAATTT
chr5	15318747	15318748	chr5:15318748:G:A	rs303339	G	A	.	Msx3.mouse_homeodomain_1	12	1	-	8.191678313596338	6.746555650029856	CCCATGATCAGGCAATTA
chr5	15338572	15338573	chr5:15338573:G:T	rs4348213	G	T	T	Msx3.mouse_homeodomain_1	12	1	-	6.812449535006636	4.30114077523781	GCACTTACAGTCCCATCA
chr5	15349628	15349629	chr5:15349629:G:C	rs77775915	G	C	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	15695612	15695613	chr5:15695613:C:T	rs192374041	C	T	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	16391771	16391772	chr5:16391772:C:T	rs335952	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr5	16547536	16547537	chr5:16547537:G:A	rs12187057	G	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	16870138	16870139	chr5:16870139:T:C	rs113370960	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr5	16900365	16900366	chr5:16900366:C:T	rs2253871	C	T	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	16984926	16984927	chr5:16984927:T:G	rs6890004	T	G	G	Msx3.mouse_homeodomain_1	6	1	-	9.755875927335964	5.510860120863803	CCAATTATGGACACATTA
chr5	17988734	17988735	chr5:17988735:C:T	rs692419	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr5	18110897	18110898	chr5:18110898:G:A	rs542405156	G	A	G	Msx3.mouse_homeodomain_1	1	1	+	7.626385054131423	8.190444534219273	GGAATTATTAAGCCATTG
chr5	18662892	18662893	chr5:18662893:A:G	rs4455559	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	6.986259644254364	0.07879440733035814	CCACTTGTCTAGCAATTT
chr5	18662912	18662913	chr5:18662913:C:A	rs4645333	C	A	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr5	18850257	18850258	chr5:18850258:G:C	rs35216751	G	C	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr5	19546894	19546895	chr5:19546895:T:A	rs347742	T	A	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr5	19751471	19751472	chr5:19751472:G:C	rs115580283	G	C	G	Msx3.mouse_homeodomain_1	1	1	-	8.862930506355148	5.598581649326834	TCAATCATAGTGGAATTA
chr5	20114496	20114497	chr5:20114497:A:G	rs6878897	A	G	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	21045659	21045660	chr5:21045660:G:A	rs67477051	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr5	21575429	21575430	chr5:21575430:C:T	rs7726998	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr5	21910904	21910905	chr5:21910905:G:C	rs9687594	G	C	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr5	22926774	22926775	chr5:22926775:C:A	rs62342547	C	A	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr5	23289645	23289646	chr5:23289646:C:T	rs34157151	C	T	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr5	23437259	23437260	chr5:23437260:C:T	rs13185460	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr5	23639259	23639260	chr5:23639260:A:C	rs12522559	A	C	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	23639409	23639410	chr5:23639410:A:G	rs4404643	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr5	24065898	24065899	chr5:24065899:G:C	rs73055099	G	C	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	26020179	26020180	chr5:26020180:A:G	rs10071963	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr5	27652851	27652852	chr5:27652852:A:G	rs10472577	A	G	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr5	29086801	29086802	chr5:29086802:G:A	rs6867873	G	A	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr5	29175994	29175995	chr5:29175995:T:C	rs184802045	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	8.54040358889426	2.441857909025126	GTGATTAAGGAGCAGTTA
chr5	29330931	29330932	chr5:29330932:C:T	rs56301812	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr5	30203646	30203647	chr5:30203647:A:C	rs11948380	A	C	A	Msx3.mouse_homeodomain_1	17	1	-	8.40340853453658	9.206035133232174	CCAATTATTAGGCAATCT
chr5	30841586	30841587	chr5:30841587:T:G	rs6892503	T	G	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr5	30932720	30932721	chr5:30932721:A:G	rs115378262	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.921955637002316	4.952524660633436	TCAATTGTAGAGCAATAA
chr5	31063045	31063046	chr5:31063046:A:G	rs1032713	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.434945522862137	4.465514546493257	TCAATTAGAGTACAATGA
chr5	31637954	31637955	chr5:31637955:C:G	rs536434126	C	G	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr5	31678090	31678091	chr5:31678091:A:G	rs4867365	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr5	32098793	32098794	chr5:32098794:T:C	rs187241440	T	C	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr5	32154226	32154227	chr5:32154227:C:G	rs6859125	C	G	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr5	32169121	32169122	chr5:32169122:T:A	rs2619870	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr5	32265801	32265802	chr5:32265802:C:T	rs11959553	C	T	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr5	32831971	32831972	chr5:32831972:C:T	rs73075628	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr5	32833496	32833497	chr5:32833497:C:T	rs12655026	C	T	C	Msx3.mouse_homeodomain_1	14	1	+	8.45647541569682	7.690694102601453	CCAATTATAAATCACTTT
chr5	32834092	32834093	chr5:32834093:T:C	rs1173726	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr5	32865928	32865929	chr5:32865929:G:C	rs6883119	G	C	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr5	32865947	32865948	chr5:32865948:T:C	rs6863996	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr5	33565031	33565032	chr5:33565032:C:T	rs4146150	C	T	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr5	33637290	33637291	chr5:33637291:T:C	rs55943381	T	C	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr5	33742465	33742466	chr5:33742466:T:A	rs1862591	T	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr5	33940711	33940712	chr5:33940712:G:A	rs57525174	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	34036997	34036998	chr5:34036998:G:A	rs6451053	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr5	34436986	34436987	chr5:34436987:C:G	rs10043812	C	G	g	Msx3.mouse_homeodomain_1	11	1	-	7.479894905819234	7.565360446529495	TCAACTAACCAGTAATTA
chr5	34625162	34625163	chr5:34625163:T:C	rs384751	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	35050402	35050403	chr5:35050403:C:G	rs1587059	C	G	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr5	35487527	35487528	chr5:35487528:A:G	rs7705697	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	12.683689808059398	5.7762245711353915	CCAATTATAAAGTCATTA
chr5	35704911	35704912	chr5:35704912:C:A	rs10059848	C	A	A	Msx3.mouse_homeodomain_1	1	1	+	10.353703960668561	7.653414583728098	GCACTTATAAGTTAATTA
chr5	35756255	35756256	chr5:35756256:C:T	rs10042935	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	35824385	35824386	chr5:35824386:G:A	rs76236360	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr5	35830720	35830721	chr5:35830721:C:A	rs10078972	C	A	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr5	35851488	35851489	chr5:35851489:G:A	rs114983382	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr5	35855161	35855162	chr5:35855162:G:C	rs2172749	G	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr5	36147653	36147654	chr5:36147654:A:G	rs113484380	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr5	36152485	36152486	chr5:36152486:G:A	rs143239170	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr5	36152692	36152693	chr5:36152693:T:C	rs114155491	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	36157709	36157710	chr5:36157710:G:A	rs3804443	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	36157712	36157713	chr5:36157713:T:C	rs33678	T	C	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr5	36260557	36260558	chr5:36260558:T:G	rs1363840	T	G	T	Msx3.mouse_homeodomain_1	7	1	+	9.154776302505496	9.10490635917056	GTAATAATGTTATAATTA
chr5	36274776	36274777	chr5:36274777:A:G	rs112068278	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr5	36371559	36371560	chr5:36371560:C:T	rs6451277	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr5	36371561	36371562	chr5:36371562:T:C	rs6451278	T	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr5	36609058	36609059	chr5:36609059:A:T	rs4869676	A	T	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	36739396	36739397	chr5:36739397:G:A	rs6869867	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	36739432	36739433	chr5:36739433:A:G	rs42320	A	G	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	37086980	37086981	chr5:37086981:C:A	rs138155149	C	A	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	37222412	37222413	chr5:37222413:A:T	rs75003678	A	T	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr5	37231286	37231287	chr5:37231287:C:T	rs113546700	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr5	37454734	37454735	chr5:37454735:C:T	rs73749038	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr5	37599483	37599484	chr5:37599484:A:G	rs55960353	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr5	37928098	37928099	chr5:37928099:C:T	rs6883146	C	T	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr5	37981539	37981540	chr5:37981540:A:C	rs10057592	A	C	C	Msx3.mouse_homeodomain_1	12	1	-	9.379111807926698	7.324851452877023	GTGATTAATGGATAATTA
chr5	38024136	38024137	chr5:38024137:G:A	rs744761	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr5	38595330	38595331	chr5:38595331:A:G	rs559787973	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	6.570429241208051	4.177443498697549	GCACTTGCAAGACCATTA
chr5	38728158	38728159	chr5:38728159:G:A	rs4337870	G	A	A	Msx3.mouse_homeodomain_1	1	1	+	7.932459534082898	8.496519014170747	CGACTTAAAATGTGATTA
chr5	38753346	38753347	chr5:38753347:C:A	rs75845289	C	A	C	Msx3.mouse_homeodomain_1	1	1	+	10.518473845463602	7.818184468523134	ACCATTATAAAGCAATTT
chr5	39109973	39109974	chr5:39109974:A:G	rs426102	A	G	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr5	39140985	39140986	chr5:39140986:A:G	rs10214021	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr5	39219952	39219953	chr5:39219953:T:C	rs13188259	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.50975959551458	5.5403286191457015	GCAATTAGCTTCCAAATA
chr5	39799327	39799328	chr5:39799328:G:T	rs563383778	G	T	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr5	40391829	40391830	chr5:40391830:T:G	rs12658567	T	G	T	Msx3.mouse_homeodomain_1	1	1	+	8.156851147523778	5.740345161376146	ATCATTGAAAGCAAATTA
chr5	40413885	40413886	chr5:40413886:C:T	rs115471531	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr5	40429147	40429148	chr5:40429148:A:T	rs6880809	A	T	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr5	40689893	40689894	chr5:40689894:A:G	rs10060234	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr5	41246747	41246748	chr5:41246748:A:G	rs56176580	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.368141414803584	0.46067617787957826	TCAATCAAGTAGGAATTG
chr5	41335015	41335016	chr5:41335016:A:G	rs16871220	A	G	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr5	41721400	41721401	chr5:41721401:A:G	rs67715253	A	G	a	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr5	41980683	41980684	chr5:41980684:T:C	rs4957440	T	C	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	42022351	42022352	chr5:42022352:G:A	rs276315	G	A	A	Msx3.mouse_homeodomain_1	1	1	-	7.725144967130743	6.87730209625006	GCACTTACAATTCATTTA
chr5	42059728	42059729	chr5:42059729:A:T	rs276239	A	T	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	42839770	42839771	chr5:42839771:A:T	rs57062650	A	T	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr5	43358244	43358245	chr5:43358245:T:G	rs56682208	T	G	T	Msx3.mouse_homeodomain_1	3	1	-	7.783818203619119	4.903643839086218	CCAAACAAAAGCCAATTA
chr5	43412740	43412741	chr5:43412741:T:G	rs34181466	T	G	t	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr5	43413038	43413039	chr5:43413039:G:C	rs187472433	G	C	g	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr5	43433040	43433041	chr5:43433041:A:G	rs7724571	A	G	N	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr5	43839209	43839210	chr5:43839210:A:G	rs7724195	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	9.82365639790417	3.725110718035033	GTAGTTAAAAACCAATAA
chr5	44390261	44390262	chr5:44390262:C:A	rs2929855	C	A	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	44593978	44593979	chr5:44593979:T:C	rs138096085	T	C	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr5	51385780	51385781	chr5:51385781:A:G	rs80183099	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	51406189	51406190	chr5:51406190:G:A	rs10076515	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	12.281157505441602	10.836034841875119	GTAATTATTGGACAATTA
chr5	51495749	51495750	chr5:51495750:A:G	rs7446508	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr5	51817467	51817468	chr5:51817468:A:T	rs13154032	A	T	A	Msx3.mouse_homeodomain_1	17	1	-	10.141989129100446	13.512775324979245	TTAATTATGTTCCAATTT
chr5	52269470	52269471	chr5:52269471:T:C	rs548045160	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	52402297	52402298	chr5:52402298:C:T	rs2961728	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.511327708034802	9.587918878971276	ACCATTGTATGGTAATTA
chr5	52804604	52804605	chr5:52804605:C:G	rs3811979	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	8.57985528324447	5.315506426216156	TCTCTTAACCTCCAATTA
chr5	52886760	52886761	chr5:52886761:C:G	rs2447866	C	G	G	Msx3.mouse_homeodomain_1	11	1	+	9.32894778179846	9.243482241088197	TCAATTAAATTCAAATTC
chr5	52938492	52938493	chr5:52938493:C:T	rs1871184	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	10.301593213707292	9.193083658542548	GTGATCACAAGCCAATTA
chr5	53005246	53005247	chr5:53005247:A:G	rs73754093	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr5	53005252	53005253	chr5:53005253:G:A	rs147068965	G	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	53005260	53005261	chr5:53005261:C:T	rs16880636	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	53024184	53024185	chr5:53024185:G:A	rs1335585225	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	53024198	53024199	chr5:53024199:A:G	rs11741738	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr5	53032501	53032502	chr5:53032502:A:C	rs186686495	A	C	A	Msx3.mouse_homeodomain_1	11	1	+	9.107557144683401	10.389973710569073	GTAATTAACCTAAGATTA
chr5	53096443	53096444	chr5:53096444:G:A	rs17298242	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr5	54226253	54226254	chr5:54226254:G:C	rs71622105	G	C	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr5	54416149	54416150	chr5:54416150:G:C	rs10079650	G	C	G	Msx3.mouse_homeodomain_1	0	1	+	8.698720654253517	8.331369144378904	GCACTTGTGTTGTAATTA
chr5	54416181	54416182	chr5:54416182:A:T	rs60376733	A	T	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr5	54489797	54489798	chr5:54489798:C:T	rs62354550	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	54937439	54937440	chr5:54937440:G:A	rs1991497	G	A	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	55159610	55159611	chr5:55159611:T:C	rs336082	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	6.243016324185997	1.6549221051628475	GCAATCAAATACCAAGTG
chr5	55456194	55456195	chr5:55456195:T:C	rs10035560	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr5	55590493	55590494	chr5:55590494:A:C	rs1983188	A	C	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr5	55621586	55621587	chr5:55621587:C:T	rs34371390	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	55636877	55636878	chr5:55636878:A:C	chr5:55636878:A:C	A	C	A	Msx3.mouse_homeodomain_1	8	1	-	8.170347983406035	8.20106912371838	CTCATTCCTAAGCAATTA
chr5	55636903	55636904	chr5:55636904:A:G	rs73119754	A	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	55636905	55636906	chr5:55636906:A:G	rs78500873	A	G	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	56058738	56058739	chr5:56058739:A:G	rs112928870	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr5	56289175	56289176	chr5:56289176:C:G	rs188306875	C	G	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	56307576	56307577	chr5:56307577:A:G	rs152320	A	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr5	56480162	56480163	chr5:56480163:T:C	rs1022951148	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	7.277619923849136	6.233647623975423	GCAATGACTATCCAATAA
chr5	57307507	57307508	chr5:57307508:A:G	rs32869	A	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr5	57676412	57676413	chr5:57676413:T:C	rs150960602	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr5	57706331	57706332	chr5:57706332:G:C	rs10940573	G	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr5	57751139	57751140	chr5:57751140:T:C	rs10054371	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr5	57956570	57956571	chr5:57956571:C:T	rs1454909	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr5	58078073	58078074	chr5:58078074:C:T	rs7731718	C	T	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr5	58081880	58081881	chr5:58081881:G:A	rs4700254	G	A	g	Msx3.mouse_homeodomain_1	2	1	+	8.90206916588399	11.418937793821069	CCGATTTAAATGCAATTG
chr5	58268680	58268681	chr5:58268681:G:C	rs17696032	G	C	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr5	58413887	58413888	chr5:58413888:G:A	rs1508920	G	A	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr5	59097504	59097505	chr5:59097505:G:A	rs929820	G	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr5	59217913	59217914	chr5:59217914:A:G	rs72644094	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	59380787	59380788	chr5:59380788:C:T	rs2702364	C	T	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr5	59694506	59694507	chr5:59694507:C:T	rs58802762	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr5	59732126	59732127	chr5:59732127:A:G	rs13179321	A	G	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr5	59759234	59759235	chr5:59759235:T:A	rs6450529	T	A	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr5	59856183	59856184	chr5:59856184:C:T	rs11956684	C	T	C	Msx3.mouse_homeodomain_1	6	1	-	7.457621091129973	9.899698318061532	GCAATAGCAAAGTCATTA
chr5	59941297	59941298	chr5:59941298:T:C	rs2916866	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	12.68024457465469	8.092150355631542	GCAATTGTTCACCAATTA
chr5	60153820	60153821	chr5:60153821:G:T	rs2910838	G	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr5	60438133	60438134	chr5:60438134:T:C	rs73759053	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	60710654	60710655	chr5:60710655:C:T	rs72755178	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr5	60952900	60952901	chr5:60952901:G:A	rs172348	G	A	G	Msx3.mouse_homeodomain_1	8	1	-	8.816532494965614	8.698828846440616	ATTATTATCTTTCAATTA
chr5	61123549	61123550	chr5:61123550:T:C	rs13190305	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	61496747	61496748	chr5:61496748:G:C	rs10060668	G	C	g	Msx3.mouse_homeodomain_1	0	1	+	7.775759421781896	7.408407911907283	GCCATTACAGATCATTTA
chr5	61920047	61920048	chr5:61920048:A:G	rs12332255	A	G	G	Msx3.mouse_homeodomain_1	17	1	+	9.202587188479246	6.634427591296045	GTGATTACAAACAGATTA
chr5	62260434	62260435	chr5:62260435:T:C	rs72767062	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr5	62349085	62349086	chr5:62349086:T:C	rs75974437	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	8.400291362975068	6.0073056204645665	GTTATTAGTTACCACTTA
chr5	62436255	62436256	chr5:62436256:A:T	rs153856	A	T	A	Msx3.mouse_homeodomain_1	8	1	+	12.495184965439321	11.45791449228177	GCAATTTAATTGTAATTA
chr5	62774854	62774855	chr5:62774855:T:C	rs1445932	T	C	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr5	63428813	63428814	chr5:63428814:A:G	rs553673985	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	11.989430011119424	5.081964774195418	AAAATTAAAAAATAATTA
chr5	64004101	64004102	chr5:64004102:A:G	rs440776	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.895430960378037	3.307336741354886	ATACTTAGACTCCCATTA
chr5	64108916	64108917	chr5:64108917:C:T	rs421980	C	T	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	64836195	64836196	chr5:64836196:A:G	rs7723701	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.283531254725685	2.6954370357025352	GCAAATAGTTTACAATTA
chr5	65625924	65625925	chr5:65625925:T:C	rs37253	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr5	65874150	65874151	chr5:65874151:C:A	rs7731246	C	A	C	Msx3.mouse_homeodomain_1	0	1	+	8.515098439611991	7.773940394321857	CCAATTAAATGAGAATTT
chr5	66340071	66340072	chr5:66340072:C:T	rs773311998	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr5	66340084	66340085	chr5:66340085:T:C	rs1560132	T	C	C	Msx3.mouse_homeodomain_1	7	1	-	7.69927360596171	6.589458068638117	CCATTTAACAAGCATTTA
chr5	66640496	66640497	chr5:66640497:T:A	rs6449830	T	A	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr5	66743803	66743804	chr5:66743804:C:T	rs168912	C	T	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr5	67052161	67052162	chr5:67052162:T:G	rs469394	T	G	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr5	67418182	67418183	chr5:67418183:A:C	rs2707772	A	C	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr5	67427750	67427751	chr5:67427751:C:T	rs79396799	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr5	67514068	67514069	chr5:67514069:T:C	rs72765070	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	8.685473221024438	6.628199042118241	GAAATTTAAGGGTAATTA
chr5	67577479	67577480	chr5:67577480:A:G	rs73113353	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.5226099233718555	0.6151446864478514	GCCATTAGTCAACAATAA
chr5	67577609	67577610	chr5:67577610:A:G	rs62372297	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr5	67732731	67732732	chr5:67732732:C:G	rs137996450	C	G	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr5	68006007	68006008	chr5:68006008:A:G	rs11744902	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	7.453362722367358	6.5128187299812135	CTCCTTAAGAGCAAATTA
chr5	68290401	68290402	chr5:68290402:G:A	rs79793103	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	68331824	68331825	chr5:68331825:A:G	rs1394048870	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	68508263	68508264	chr5:68508264:A:G	rs7704214	A	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	68543482	68543483	chr5:68543483:T:C	rs777983103	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	71098265	71098266	chr5:71098266:A:G	rs150451	A	G	a	Msx3.mouse_homeodomain_1	4	1	-	9.384258433646373	3.2857127537772413	AAAATAAAAAACAAATTA
chr5	71645266	71645267	chr5:71645267:G:A	rs16869487	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr5	71664346	71664347	chr5:71664347:A:G	rs157047	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	71704236	71704237	chr5:71704237:C:A	rs183864613	C	A	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr5	71704282	71704283	chr5:71704283:C:T	rs16871210	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr5	71929082	71929083	chr5:71929083:C:G	rs1674703	C	G	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	72007480	72007481	chr5:72007481:G:A	rs1010376	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	10.166953338361704	8.456722919377995	ACCATTAGGCACTAATTA
chr5	72166799	72166800	chr5:72166800:T:G	rs78038256	T	G	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	72166804	72166805	chr5:72166805:T:C	rs3098382	T	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr5	72388390	72388391	chr5:72388391:A:C	rs10474048	A	C	A	Msx3.mouse_homeodomain_1	10	1	-	9.513482500581134	8.93046285361978	CCAATAAAAATCTAATAA
chr5	72658565	72658566	chr5:72658566:C:T	rs889236	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr5	73197982	73197983	chr5:73197983:T:A	chr5:73197983:T:A	T	A	T	Msx3.mouse_homeodomain_1	2	1	-	7.008898081548437	3.8534704633358166	GCACTTATGTGCAAATTG
chr5	73389161	73389162	chr5:73389162:C:T	rs80288411	C	T	C	Msx3.mouse_homeodomain_1	2	1	-	7.224590420471869	9.741459048408945	CCGATTGCTGGGTAATTA
chr5	73393500	73393501	chr5:73393501:G:A	rs13183753	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	73759755	73759756	chr5:73759756:A:G	rs10515163	A	G	A	Msx3.mouse_homeodomain_1	8	1	+	10.754304353301805	9.747755020456598	GCCATTACATAGGAATTA
chr5	73759770	73759771	chr5:73759771:T:A	rs57533001	T	A	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr5	73812680	73812681	chr5:73812681:G:A	chr5:73812681:G:A	G	A	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	73812680	73812681	chr5:73812681:G:T	rs59611140	G	T	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	73947513	73947514	chr5:73947514:T:G	chr5:73947514:T:G	T	G	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr5	74186203	74186204	chr5:74186204:T:A	rs10462348	T	A	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr5	74186208	74186209	chr5:74186209:T:A	rs10462349	T	A	A	Msx3.mouse_homeodomain_1	4	1	+	11.80823904136814	4.903217495632058	GCACTTAGAAAATAATTA
chr5	74202907	74202908	chr5:74202908:G:C	rs158818	G	C	G	Msx3.mouse_homeodomain_1	11	1	+	10.299155821825419	10.384621362535679	AAAATTATCTTGTAATTA
chr5	74631924	74631925	chr5:74631925:C:T	rs35323547	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	74648988	74648989	chr5:74648989:C:T	rs62368182	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr5	74652153	74652154	chr5:74652154:A:T	rs6896412	A	T	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr5	75238076	75238077	chr5:75238077:G:A	rs28539749	G	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr5	75335003	75335004	chr5:75335004:G:A	rs72633963	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	7.692227927916531	8.698777260761737	CCAATTCCGGACCCATTA
chr5	75364929	75364930	chr5:75364930:C:G	rs151264833	C	G	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr5	75640570	75640571	chr5:75640571:G:A	rs77302640	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.835537159821861	8.727027604657117	GCAATTAAATTTAACTTA
chr5	75668302	75668303	chr5:75668303:C:T	rs34357	C	T	t	Msx3.mouse_homeodomain_1	3	1	+	8.501318536383998	6.254142560768808	ACACTTGCAATTCAATTA
chr5	75847526	75847527	chr5:75847527:C:T	rs75083437	C	T	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	76175667	76175668	chr5:76175668:A:G	rs1553324	A	G	.	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr5	76393891	76393892	chr5:76393892:G:A	rs55864058	G	A	g	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr5	76395194	76395195	chr5:76395195:A:G	rs57929471	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr5	76515012	76515013	chr5:76515013:G:A	rs62361965	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr5	76643433	76643434	chr5:76643434:A:G	rs2910820	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr5	76778893	76778894	chr5:76778894:G:T	rs250754	G	T	T	Msx3.mouse_homeodomain_1	6	1	-	10.701110614376994	14.946126420849154	ACAATTCAAGAGTAATTA
chr5	76821239	76821240	chr5:76821240:T:C	rs2243003	T	C	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr5	77129629	77129630	chr5:77129630:C:A	rs62362605	C	A	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr5	77213721	77213722	chr5:77213722:T:C	rs12652928	T	C	c	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr5	77495496	77495497	chr5:77495497:G:A	rs61710538	G	A	G	Msx3.mouse_homeodomain_1	6	1	+	8.764656584356828	11.206733811288387	ACAATCGAACACAAATTA
chr5	77683037	77683038	chr5:77683038:G:A	rs17786375	G	A	a	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr5	77907009	77907010	chr5:77907010:G:A	rs564131670	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr5	78112651	78112652	chr5:78112652:A:G	rs17191796	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.402929723551506	3.4334987471826275	GCTATTATAAACCAAGTA
chr5	78321334	78321335	chr5:78321335:G:A	rs4348192	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	78500189	78500190	chr5:78500190:A:G	rs78874503	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr5	78500887	78500888	chr5:78500888:T:C	rs11737914	T	C	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr5	78523872	78523873	chr5:78523873:G:T	rs78129941	G	T	G	Msx3.mouse_homeodomain_1	14	1	+	7.92613881505322	8.187472682726817	ACAATAAACAGGCAGTTA
chr5	78638922	78638923	chr5:78638923:T:C	rs7724320	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr5	78903852	78903853	chr5:78903853:T:A	rs337862	T	A	T	Msx3.mouse_homeodomain_1	10	1	-	8.91281308752859	8.41924156355347	TAAATTAAAAAGAAATCA
chr5	79401217	79401218	chr5:79401218:C:T	rs6453445	C	T	T	Msx3.mouse_homeodomain_1	9	1	+	11.106615572126774	11.998704604198025	GCAATTACACGGCACTTA
chr5	79473545	79473546	chr5:79473546:T:C	rs9293785	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr5	79613139	79613140	chr5:79613140:A:G	rs182667692	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	7.726106624700399	6.8340175926291495	GCAATTTCATGCCATTTA
chr5	79966760	79966761	chr5:79966761:C:T	rs10041212	C	T	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr5	79993171	79993172	chr5:79993172:A:G	rs1438739	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	8.150571327177722	5.708494100246166	TGCATTAAAGAGAAATTA
chr5	80070129	80070130	chr5:80070130:G:A	rs1012938015	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	80156205	80156206	chr5:80156206:C:G	rs112216132	C	G	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr5	80253495	80253496	chr5:80253496:C:T	rs72776296	C	T	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr5	80259883	80259884	chr5:80259884:G:C	rs7726700	G	C	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr5	80326652	80326653	chr5:80326653:G:A	rs2405378	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr5	80327364	80327365	chr5:80327365:A:G	rs74643058	A	G	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr5	80686990	80686991	chr5:80686991:A:C	rs77908157	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	7.610996086693733	2.5374633105844056	ACCATTAAACAGTAATTC
chr5	80687002	80687003	chr5:80687003:A:G	rs3797880	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.610996086693733	1.5124504068246023	ACCATTAAACAGTAATTC
chr5	80687019	80687020	chr5:80687020:C:T	rs17205503	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr5	80895594	80895595	chr5:80895595:G:T	rs10057510	G	T	G	Msx3.mouse_homeodomain_1	13	1	-	8.584468848558604	11.46866190503598	TAAATTACAATACCATTA
chr5	81008553	81008554	chr5:81008554:T:C	rs565834	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr5	81069067	81069068	chr5:81069068:T:C	rs26906	T	C	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	81290503	81290504	chr5:81290504:A:G	rs149435575	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr5	81554272	81554273	chr5:81554273:A:C	rs11954000	A	C	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr5	81779864	81779865	chr5:81779865:T:A	rs775922269	T	A	T	Msx3.mouse_homeodomain_1	5	1	+	10.841033722997246	8.019631675840866	TCAATTATTCTGAAATTA
chr5	82693005	82693006	chr5:82693006:G:A	rs17283939	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	82924726	82924727	chr5:82924727:T:C	rs7731435	T	C	C	Msx3.mouse_homeodomain_1	13	1	-	9.290410496864158	7.233136317957961	CCACTTAGATTGCAATAA
chr5	83800452	83800453	chr5:83800453:C:T	rs13355569	C	T	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	83906363	83906364	chr5:83906364:T:C	rs6898404	T	C	C	Msx3.mouse_homeodomain_1	3	1	-	8.753287252891816	4.783856276522938	GCCATAAACATTTAATTA
chr5	84197708	84197709	chr5:84197709:T:A	rs13165263	T	A	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	84250060	84250061	chr5:84250061:G:A	rs77443773	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr5	84710151	84710152	chr5:84710152:T:C	rs61579795	T	C	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr5	84724903	84724904	chr5:84724904:C:T	rs76574793	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr5	85268130	85268131	chr5:85268131:T:C	rs79805046	T	C	.	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	86679919	86679920	chr5:86679920:A:G	rs113275192	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr5	87077296	87077297	chr5:87077297:A:G	rs6860470	A	G	a	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	87899141	87899142	chr5:87899142:G:A	rs28534489	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	88173845	88173846	chr5:88173846:T:C	rs10057775	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	7.913973060575784	1.8154273807066506	ACTATTAAGTGACAATTG
chr5	88845124	88845125	chr5:88845125:G:A	rs160045	G	A	G	Msx3.mouse_homeodomain_1	8	1	-	11.488996139727217	11.371292491202219	TTAATTAACATGGAATTA
chr5	88884459	88884460	chr5:88884460:A:T	rs115256233	A	T	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr5	89071346	89071347	chr5:89071347:C:T	rs13189532	C	T	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr5	89239714	89239715	chr5:89239715:C:T	rs144857101	C	T	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr5	89396544	89396545	chr5:89396545:A:C	rs34938263	A	C	G	Msx3.mouse_homeodomain_1	6	1	+	9.555929152324888	5.310913345852725	CCAATAAACTGCCAATTT
chr5	90802908	90802909	chr5:90802909:C:G	rs376450621	C	G	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr5	90944210	90944211	chr5:90944211:T:A	rs2063244	T	A	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr5	91058447	91058448	chr5:91058448:G:A	rs2662278	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	7.900754334660936	6.455631671094455	TCAATTACCTAACGATTT
chr5	91121854	91121855	chr5:91121855:A:G	rs148382118	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr5	91227953	91227954	chr5:91227954:A:C	rs35059634	A	C	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr5	92309479	92309480	chr5:92309480:T:A	rs143500612	T	A	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	92338303	92338304	chr5:92338304:G:C	rs114649583	G	C	G	Msx3.mouse_homeodomain_1	13	1	+	7.947492133001886	7.120573255430707	GCAATGAAAATGGGATTA
chr5	92713276	92713277	chr5:92713277:T:C	rs1532695	T	C	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr5	92852224	92852225	chr5:92852225:C:T	rs17669337	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	93574835	93574836	chr5:93574836:A:G	chr5:93574836:A:G	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	94469684	94469685	chr5:94469685:G:A	rs10068639	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr5	94968481	94968482	chr5:94968482:A:G	rs1437120	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr5	95296461	95296462	chr5:95296462:G:C	rs154058	G	C	G	Msx3.mouse_homeodomain_1	7	1	-	9.795664453724358	10.075735463105518	GCAGTTACAAACCAATTT
chr5	95701298	95701299	chr5:95701299:A:C	rs150543	A	C	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr5	95830530	95830531	chr5:95830531:T:C	rs72785409	T	C	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr5	95953693	95953694	chr5:95953694:A:G	rs6898399	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr5	96281449	96281450	chr5:96281450:A:T	rs6881060	A	T	A	Msx3.mouse_homeodomain_1	9	1	-	11.765229191881314	12.179370463754395	GTAATTAACTGCTGATTA
chr5	96333092	96333093	chr5:96333093:C:T	rs271913	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	7.412254269867373	6.564411398986686	TCCATTAATATCCCATCA
chr5	96381914	96381915	chr5:96381915:A:G	rs4869133	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr5	96621543	96621544	chr5:96621544:A:G	rs3853206	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr5	96957448	96957449	chr5:96957449:A:G	rs4360063	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.182445132552328	3.5943509135291767	GGAGTTAGGTTGCAATTA
chr5	97406897	97406898	chr5:97406898:C:T	rs10035513	C	T	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr5	98064922	98064923	chr5:98064923:C:G	rs72767640	C	G	.	Msx3.mouse_homeodomain_1	9	1	-	9.814539190081604	9.448852878523418	CTAATAAAGGAATAATTA
chr5	98103861	98103862	chr5:98103862:G:A	rs4487514	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr5	99823813	99823814	chr5:99823814:T:A	chr5:99823814:T:A	T	A	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr5	100593176	100593177	chr5:100593177:G:A	rs184888	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr5	100841814	100841815	chr5:100841815:A:G	rs2548279	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	9.318649286774875	6.876572059843316	CTAATCAGTGACAAATTA
chr5	100939207	100939208	chr5:100939208:T:C	rs34564041	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	101067540	101067541	chr5:101067541:C:G	rs34258305	C	G	C	Msx3.mouse_homeodomain_1	7	1	-	8.13384434307076	7.8537733336895945	GTGATTAGGGAGCAATAA
chr5	101425309	101425310	chr5:101425310:T:G	rs1874171	T	G	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	101993105	101993106	chr5:101993106:A:G	rs12055006	A	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr5	102531821	102531822	chr5:102531822:A:T	rs76815435	A	T	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	102531866	102531867	chr5:102531867:T:G	rs62369689	T	G	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr5	103288222	103288223	chr5:103288223:A:G	rs556560	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr5	103435286	103435287	chr5:103435287:A:G	rs2115251	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr5	103526359	103526360	chr5:103526360:C:G	rs139300420	C	G	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	103674066	103674067	chr5:103674067:C:T	rs11950651	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr5	105521830	105521831	chr5:105521831:C:G	rs73776864	C	G	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr5	105632185	105632186	chr5:105632186:G:A	rs10053049	G	A	g	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr5	105632606	105632607	chr5:105632607:C:G	rs10070359	C	G	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr5	106189299	106189300	chr5:106189300:T:C	rs79330247	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr5	106474633	106474634	chr5:106474634:T:G	rs2135049	T	G	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr5	107009882	107009883	chr5:107009883:G:A	rs72786403	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	107011849	107011850	chr5:107011850:T:C	rs10062690	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	9.604217758919116	5.016123539895965	CCAATTACATCTTGATTA
chr5	107058154	107058155	chr5:107058155:G:A	rs4269278	G	A	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	107296124	107296125	chr5:107296125:A:G	rs78939434	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr5	107468216	107468217	chr5:107468217:T:C	rs151957	T	C	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr5	107512685	107512686	chr5:107512686:C:T	rs73197084	C	T	c	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr5	107557040	107557041	chr5:107557041:G:A	chr5:107557041:G:A	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr5	107557040	107557041	chr5:107557041:G:C	rs352607	G	C	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr5	107777039	107777040	chr5:107777040:A:C	rs6891926	A	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr5	107777072	107777073	chr5:107777073:T:C	rs13170988	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr5	107794717	107794718	chr5:107794718:G:A	rs6871240	G	A	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr5	107794840	107794841	chr5:107794841:T:A	rs62355926	T	A	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr5	107970127	107970128	chr5:107970128:T:C	rs6893313	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr5	108581207	108581208	chr5:108581208:T:C	rs10065061	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	7.5226022515155035	0.6151370145914987	CCAATTTGGAGACAATTG
chr5	108770238	108770239	chr5:108770239:C:T	rs62361304	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr5	109408287	109408288	chr5:109408288:G:A	rs79612120	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	9.479241246368012	11.53651542527421	GTAATTAAACATCGATCA
chr5	109530736	109530737	chr5:109530737:A:G	rs10070104	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	109530746	109530747	chr5:109530747:C:A	rs10054960	C	A	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	109805778	109805779	chr5:109805779:A:T	rs2042167	A	T	T	Msx3.mouse_homeodomain_1	14	1	+	7.937115290101128	3.6103549387515748	TCATTTATAAAGCAATCA
chr5	109867340	109867341	chr5:109867341:G:A	rs4957836	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr5	109922358	109922359	chr5:109922359:C:A	rs180801243	C	A	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr5	110090268	110090269	chr5:110090269:A:T	rs2966740	A	T	T	Msx3.mouse_homeodomain_1	7	1	+	7.539135115253894	6.479189521265236	GCACTTAAGTGACATTTA
chr5	110228233	110228234	chr5:110228234:G:A	rs73782091	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	110475768	110475769	chr5:110475769:A:T	rs114597427	A	T	A	Msx3.mouse_homeodomain_1	5	1	-	8.331437311008308	5.5100352638519245	GCAATTAATGAGTACTCA
chr5	110719841	110719842	chr5:110719842:G:C	rs11960543	G	C	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr5	110735845	110735846	chr5:110735846:C:T	rs116440734	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr5	111112153	111112154	chr5:111112154:A:G	rs12515367	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	7.400507595268134	5.007521852757632	GCCATTTCAGCACAATTA
chr5	111160166	111160167	chr5:111160167:G:A	rs1370963	G	A	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr5	111167679	111167680	chr5:111167680:C:T	rs10063014	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	7.213999134532953	7.543940087249052	CCAATTACAGGACCATTT
chr5	111337197	111337198	chr5:111337198:T:C	rs367966	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.419228189253523	5.449797212884644	GAAATAAAAAAGGAATTA
chr5	111549183	111549184	chr5:111549184:A:G	rs80289873	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	6.183196734255014	5.853255781538915	CCACTTATGTGGCCATTG
chr5	111549190	111549191	chr5:111549191:G:T	rs1052004674	G	T	G	Msx3.mouse_homeodomain_1	0	1	-	6.183196734255014	5.442038688964881	CCACTTATGTGGCCATTG
chr5	111556815	111556816	chr5:111556816:T:C	rs115934424	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.166466021344583	4.5783718023214295	CCTATTAAATCCCAATAA
chr5	111742055	111742056	chr5:111742056:T:C	rs73787367	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	111949184	111949185	chr5:111949185:T:C	rs6862840	T	C	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr5	112107157	112107158	chr5:112107158:T:C	rs79277706	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr5	112159812	112159813	chr5:112159813:C:T	rs7731129	C	T	c	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr5	112183506	112183507	chr5:112183507:C:T	rs1560055	C	T	T	Msx3.mouse_homeodomain_1	7	1	+	7.105371978670141	7.43531293138624	ACCATTACGGTGTAATTG
chr5	112183615	112183616	chr5:112183616:T:C	chr5:112183616:T:C	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	8.236069193081358	7.126253655757763	CCCATCAAAATACAATTT
chr5	112307008	112307009	chr5:112307009:C:A	rs11743178	C	A	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr5	112333382	112333383	chr5:112333383:C:G	rs990165741	C	G	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	112634359	112634360	chr5:112634360:T:A	rs9326859	T	A	A	Msx3.mouse_homeodomain_1	15	1	+	7.724289477933072	1.6453760585752157	CCCATCATTTTGCAATTG
chr5	112681297	112681298	chr5:112681298:C:G	rs17285505	C	G	G	Msx3.mouse_homeodomain_1	1	1	+	7.61531672144645	4.350967864418135	GCAATTAAAACATGGTTA
chr5	113034613	113034614	chr5:113034614:A:G	rs878073	A	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr5	113138530	113138531	chr5:113138531:C:G	rs4705791	C	G	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr5	113266371	113266372	chr5:113266372:G:A	rs80242654	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr5	113531440	113531441	chr5:113531441:T:G	rs4438867	T	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	113531464	113531465	chr5:113531465:T:C	rs72794121	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr5	113562976	113562977	chr5:113562977:A:G	rs9326893	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	113687262	113687263	chr5:113687263:T:C	rs2416328	T	C	C	Msx3.mouse_homeodomain_1	12	1	+	9.161998980448615	10.607121644015098	CCCATTAGATGCTAATTG
chr5	114070178	114070179	chr5:114070179:G:A	rs2974490	G	A	g	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	114519699	114519700	chr5:114519700:A:C	rs680075	A	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	114561486	114561487	chr5:114561487:T:C	rs10519391	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr5	115210936	115210937	chr5:115210937:T:G	rs73253463	T	G	T	Msx3.mouse_homeodomain_1	7	1	+	9.441889449079575	9.392019505744642	CCAATAATAAATCAATCA
chr5	115309809	115309810	chr5:115309810:A:C	rs267286	A	C	C	Msx3.mouse_homeodomain_1	4	1	-	8.342361848070185	2.684372596120487	CTCATTAAGTAGAAATTG
chr5	115392780	115392781	chr5:115392781:T:C	rs11748373	T	C	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr5	115625265	115625266	chr5:115625266:G:T	rs10069695	G	T	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	115869677	115869678	chr5:115869678:G:C	rs74898206	G	C	G	Msx3.mouse_homeodomain_1	5	1	-	8.174752009031423	6.125155974074757	ACAATCAAAATACAATGA
chr5	115934334	115934335	chr5:115934335:A:G	rs13181748	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr5	115939558	115939559	chr5:115939559:C:G	rs1338473310	C	G	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr5	115987124	115987125	chr5:115987125:G:A	rs10519435	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	7.705885911011303	8.712435243856511	ACAAATAAGCTCCAATTA
chr5	116035347	116035348	chr5:116035348:C:G	rs139209841	C	G	G	Msx3.mouse_homeodomain_1	9	1	-	9.712160829727157	9.346474518168971	ACGATTAATGAGCAATCA
chr5	116067895	116067896	chr5:116067896:T:A	rs6882621	T	A	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr5	116316446	116316447	chr5:116316447:C:G	rs1669144	C	G	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr5	116436655	116436656	chr5:116436656:G:C	rs26588	G	C	G	Msx3.mouse_homeodomain_1	11	1	-	7.786646146675211	7.7011806059649475	GTAATTGCATGCAGATTA
chr5	116512713	116512714	chr5:116512714:A:C	rs57671703	A	C	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	117055193	117055194	chr5:117055194:G:T	rs562258343	G	T	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr5	117088802	117088803	chr5:117088803:A:G	rs10478326	A	G	A	Msx3.mouse_homeodomain_1	11	1	+	8.627467725425362	9.824418750600774	GTAATTAACAGATATTTA
chr5	117375821	117375822	chr5:117375822:C:G	rs1863975	C	G	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr5	117498245	117498246	chr5:117498246:C:A	rs10062047	C	A	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr5	117560382	117560383	chr5:117560383:C:A	rs265863	C	A	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	117803666	117803667	chr5:117803667:C:T	rs77831802	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr5	118511917	118511918	chr5:118511918:G:A	rs72795512	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr5	118688354	118688355	chr5:118688355:T:G	rs12655864	T	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	118697288	118697289	chr5:118697289:T:C	rs10477582	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	8.710272687061764	4.122178468038612	CTACTTATAATACCATTA
chr5	119303572	119303573	chr5:119303573:A:G	rs572888602	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr5	119303574	119303575	chr5:119303575:C:T	rs1394631	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr5	119343893	119343894	chr5:119343894:G:A	rs73790816	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr5	119427803	119427804	chr5:119427804:G:A	rs193346	G	A	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr5	119680494	119680495	chr5:119680495:A:T	rs1972629	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	8.303282563247851	2.2243691438899926	GAAATTGGAAAGCAATAA
chr5	120083898	120083899	chr5:120083899:T:C	rs347558	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	8.575237481241164	8.245296528525067	GGAATAATCCTGCAATTA
chr5	120293577	120293578	chr5:120293578:G:C	rs4505982	G	C	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	120435257	120435258	chr5:120435258:A:G	rs72786214	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr5	121792353	121792354	chr5:121792354:A:G	rs575959302	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	10.966748437219273	6.378654218196126	GCAATTAGTCCCCAATTG
chr5	121899627	121899628	chr5:121899628:A:G	rs35879335	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	9.557581467788427	8.665492435717177	CCAATTTAGTAGTGATTA
chr5	123112109	123112110	chr5:123112110:C:T	rs173030	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr5	123300509	123300510	chr5:123300510:T:A	rs6595436	T	A	A	Msx3.mouse_homeodomain_1	17	1	-	10.159648840597594	6.788862644718796	ATATTTAAAAAACAATTA
chr5	123835810	123835811	chr5:123835811:A:G	rs171724	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr5	123868630	123868631	chr5:123868631:G:T	rs11748635	G	T	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr5	123917448	123917449	chr5:123917449:A:G	rs72802040	A	G	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr5	124027170	124027171	chr5:124027171:T:C	rs62371247	T	C	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr5	124088199	124088200	chr5:124088200:A:T	rs55898664	A	T	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	124264445	124264446	chr5:124264446:T:G	rs146261599	T	G	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	124264476	124264477	chr5:124264477:T:C	rs78206343	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	6.236302627722002	-0.6711626092020031	ACCATTGCGCAGCAATTG
chr5	124372931	124372932	chr5:124372932:C:T	rs116597592	C	T	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	124463123	124463124	chr5:124463124:G:A	rs73781683	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr5	124650044	124650045	chr5:124650045:T:G	rs142639123	T	G	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr5	124949595	124949596	chr5:124949596:A:G	rs2028855	A	G	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	125134936	125134937	chr5:125134937:C:T	rs148067324	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr5	125134954	125134955	chr5:125134955:A:G	rs17449514	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	7.316633103810907	6.206817566487314	TCTATCAAGATGCCATTA
chr5	125134961	125134962	chr5:125134962:A:G	rs971223521	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.316633103810907	2.7285388847877576	TCTATCAAGATGCCATTA
chr5	125195400	125195401	chr5:125195401:A:G	rs34649431	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr5	125373719	125373720	chr5:125373720:G:A	rs925896	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr5	125504039	125504040	chr5:125504040:A:G	rs1213333894	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	125582352	125582353	chr5:125582353:T:A	rs9327362	T	A	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr5	125831796	125831797	chr5:125831797:G:A	rs2116569	G	A	g	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr5	125846906	125846907	chr5:125846907:A:G	rs71586072	A	G	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr5	126004659	126004660	chr5:126004660:G:C	rs138904701	G	C	G	Msx3.mouse_homeodomain_1	11	1	-	10.296715119022853	10.211249578312593	ACAATTGTAATCCAATCA
chr5	126349241	126349242	chr5:126349242:T:A	rs28712275	T	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	126390424	126390425	chr5:126390425:C:T	rs7732081	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	9.105817059831587	10.182408230768061	TTAATTAATGGCCATTTA
chr5	126513717	126513718	chr5:126513718:C:T	rs190859623	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr5	127029773	127029774	chr5:127029774:G:A	rs58159475	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr5	127388936	127388937	chr5:127388937:C:T	rs76943329	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr5	127459431	127459432	chr5:127459432:T:C	rs77171194	T	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr5	128304370	128304371	chr5:128304371:C:T	rs17676538	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr5	128304383	128304384	chr5:128304384:C:T	rs32216	C	T	T	Msx3.mouse_homeodomain_1	0	1	+	7.508448381031111	6.684857636770933	CCACTTGGCTACCCATTA
chr5	128305168	128305169	chr5:128305169:A:G	rs27855	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	9.886971163862313	10.004674812387307	ATAATTAATAGCAGATTA
chr5	128435111	128435112	chr5:128435112:G:C	rs331079	G	C	G	Msx3.mouse_homeodomain_1	9	1	+	7.6688854816104435	7.303199170052258	TCCATCAAAGTGCAATTT
chr5	128681850	128681851	chr5:128681851:A:G	rs10072361	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.61440262383028	1.7069373869062745	GTACTTAGAAACCAATGA
chr5	128682425	128682426	chr5:128682426:C:A	rs148702246	C	A	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr5	128991189	128991190	chr5:128991190:A:G	rs6877556	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	11.219108234979632	4.311642998055628	TCACTAAAATACCAATTA
chr5	129361435	129361436	chr5:129361436:T:C	rs10054817	T	C	T	Msx3.mouse_homeodomain_1	11	1	+	7.958233663695753	9.668464082679463	GAAATAAGCCATCAATTA
chr5	129383728	129383729	chr5:129383729:C:T	chr5:129383729:C:T	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	129589736	129589737	chr5:129589737:T:C	rs72790625	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	129967665	129967666	chr5:129967666:T:C	rs184776086	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	10.184522553836896	9.177973220991689	CAAATCACATGCCAATTA
chr5	131094864	131094865	chr5:131094865:G:A	chr5:131094865:G:A	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	132109966	132109967	chr5:132109967:A:T	rs154724	A	T	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr5	132430737	132430738	chr5:132430738:C:G	rs757103	C	G	C	Msx3.mouse_homeodomain_1	5	1	+	9.40928820698597	7.359692172029306	CCAATCAGCAACCATTTA
chr5	133041420	133041421	chr5:133041421:G:A	rs11950367	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	133342660	133342661	chr5:133342661:C:T	rs75170523	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr5	133525630	133525631	chr5:133525631:C:T	rs35872998	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr5	133579966	133579967	chr5:133579967:A:G	rs26362	A	G	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr5	133579971	133579972	chr5:133579972:G:T	rs368120	G	T	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr5	133684002	133684003	chr5:133684003:T:C	rs11960051	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr5	133727530	133727531	chr5:133727531:C:G	rs10900823	C	G	G	Msx3.mouse_homeodomain_1	9	1	-	8.509328720037058	8.143642408478872	GAAATTATTGATCAATTG
chr5	133975093	133975094	chr5:133975094:T:C	rs11745792	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr5	134501329	134501330	chr5:134501330:A:C	rs1476096	A	C	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr5	134926968	134926969	chr5:134926969:G:A	rs78938134	G	A	-	Msx3.mouse_homeodomain_1	10	1	+	7.557886943328174	8.634478114264649	GTCATCAAAAGGCTATTA
chr5	134926980	134926981	chr5:134926981:G:C	rs561815770	G	C	-	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	134926986	134926987	chr5:134926987:G:A	rs10155566	G	A	-	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	134927949	134927950	chr5:134927950:A:G	rs12164006	A	G	-	Msx3.mouse_homeodomain_1	4	1	-	7.572159529252555	1.4736138493834212	CCACTCACAGCCTAATTA
chr5	135466183	135466184	chr5:135466184:G:C	rs111747313	G	C	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr5	135762160	135762161	chr5:135762161:C:T	rs62365688	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr5	135994364	135994365	chr5:135994365:T:C	rs17739831	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr5	136186474	136186475	chr5:136186475:T:C	rs149208581	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr5	136692200	136692201	chr5:136692201:C:T	rs2188464	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr5	136808868	136808869	chr5:136808869:C:T	rs10063323	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	136985068	136985069	chr5:136985069:A:G	rs17521219	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr5	137346483	137346484	chr5:137346484:A:T	rs11744203	A	T	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr5	137346521	137346522	chr5:137346522:A:G	rs77261418	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	137594874	137594875	chr5:137594875:G:A	rs6892472	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr5	137634794	137634795	chr5:137634795:A:G	rs3798137	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr5	138567394	138567395	chr5:138567395:A:G	rs256014	A	G	G	Msx3.mouse_homeodomain_1	11	1	+	11.113943573025193	12.310894598200601	TCAATTACTAAAAAATTA
chr5	140148135	140148136	chr5:140148136:G:A	rs13179861	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr5	140293498	140293499	chr5:140293499:T:C	rs13159261	T	C	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr5	141074915	141074916	chr5:141074916:A:G	rs31801	A	G	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr5	141525581	141525582	chr5:141525582:A:G	rs166116	A	G	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr5	141651825	141651826	chr5:141651826:G:C	rs115108469	G	C	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr5	141651857	141651858	chr5:141651858:T:G	rs111415837	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	7.214766319380863	4.83217887791014	CCAGTTAAGCGGGAATTA
chr5	141703166	141703167	chr5:141703167:G:T	rs113977141	G	T	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr5	142027431	142027432	chr5:142027432:T:C	rs252128	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	11.071447167569355	8.629369940637796	TCAATCAAATAGCAATTT
chr5	142079763	142079764	chr5:142079764:T:C	rs34952182	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	9.122082674054269	8.078110374180554	GCACTTGAAATGTGATTA
chr5	142323750	142323751	chr5:142323751:G:A	rs541554297	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	8.095178355004649	7.247335484123961	ACGATCAAAAAGCATTTA
chr5	142394807	142394808	chr5:142394808:A:G	rs10053979	A	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	142511727	142511728	chr5:142511728:A:C	rs249736	A	C	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	142837919	142837920	chr5:142837920:G:A	rs10045187	G	A	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	143248646	143248647	chr5:143248647:C:T	rs139068600	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr5	143250343	143250344	chr5:143250344:T:C	rs35501467	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr5	143542739	143542740	chr5:143542740:C:T	rs1900174	C	T	T	Msx3.mouse_homeodomain_1	10	1	+	8.272038419439127	9.316010719312839	CCAATACAAACACAATTA
chr5	143575402	143575403	chr5:143575403:T:G	rs149485	T	G	T	Msx3.mouse_homeodomain_1	8	1	+	8.363659061541469	8.39438020185381	GTACTTAGTAGGCAATCA
chr5	143806432	143806433	chr5:143806433:T:C	rs3996362	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	10.301369890704912	8.244095711798717	GTGCTTATCAACCAATTA
chr5	143825550	143825551	chr5:143825551:G:A	rs73291494	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr5	143946912	143946913	chr5:143946913:A:C	rs466656	A	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr5	144309072	144309073	chr5:144309073:A:G	rs1422715	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr5	144598458	144598459	chr5:144598459:A:G	rs553569709	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr5	145229969	145229970	chr5:145229970:G:A	rs17471413	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	7.392536799999287	9.449810978905482	GTGATTATGAGCCGATTG
chr5	145450564	145450565	chr5:145450565:G:A	rs13177728	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	145480282	145480283	chr5:145480283:C:T	rs12655244	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr5	145661367	145661368	chr5:145661368:C:T	rs545226620	C	T	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	145661368	145661369	chr5:145661369:G:A	rs62392296	G	A	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr5	145925411	145925412	chr5:145925412:T:C	rs73310112	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr5	145926202	145926203	chr5:145926203:G:A	rs6873171	G	A	g	Msx3.mouse_homeodomain_1	9	1	+	7.7548034290163	8.695347421402445	TGGATTAACGTCTAATTA
chr5	145926224	145926225	chr5:145926225:G:A	rs73310116	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr5	146688006	146688007	chr5:146688007:G:T	rs17105166	G	T	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr5	146840180	146840181	chr5:146840181:G:A	rs4705446	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr5	146840193	146840194	chr5:146840194:C:T	rs319154	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr5	146889480	146889481	chr5:146889481:T:C	rs319193	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr5	147803191	147803192	chr5:147803192:G:C	rs76031156	G	C	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr5	147813985	147813986	chr5:147813986:T:A	rs7704640	T	A	G	Msx3.mouse_homeodomain_1	4	1	+	8.44552649179645	1.54050494606037	CCCATCATATTGCCATTA
chr5	148071242	148071243	chr5:148071243:A:G	rs1423000	A	G	G	Msx3.mouse_homeodomain_1	10	1	-	11.435283088454685	10.39131078858097	CCAATTGTAATATAATTA
chr5	148168318	148168319	chr5:148168319:T:C	rs10068904	T	C	t	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr5	148168342	148168343	chr5:148168343:T:C	rs10068913	T	C	t	Msx3.mouse_homeodomain_1	3	1	-	8.36488507647667	4.395454100107791	GCCATTAGCAGGCAATTC
chr5	148168353	148168354	chr5:148168354:T:C	rs10068916	T	C	t	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr5	148655158	148655159	chr5:148655159:C:A	rs115260083	C	A	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr5	148859405	148859406	chr5:148859406:A:G	rs6580585	A	G	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr5	149001633	149001634	chr5:149001634:G:A	rs1045942	G	A	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr5	149024651	149024652	chr5:149024652:A:G	chr5:149024652:A:G	A	G	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr5	149067192	149067193	chr5:149067193:A:G	rs168750	A	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	149127871	149127872	chr5:149127872:T:A	rs4432874	T	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	149127899	149127900	chr5:149127900:G:A	rs73795791	G	A	G	Msx3.mouse_homeodomain_1	14	1	+	7.201754191560069	11.789848410583218	GTGATTATCCAGCAGTTA
chr5	149134771	149134772	chr5:149134772:A:G	rs4705323	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr5	149455313	149455314	chr5:149455314:A:G	rs72840218	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr5	149597669	149597670	chr5:149597670:C:T	rs10515630	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	149794506	149794507	chr5:149794507:C:T	rs77296038	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	149823597	149823598	chr5:149823598:T:C	rs144488714	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr5	149960131	149960132	chr5:149960132:T:C	rs75063351	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	10.042217216166463	8.932401678842869	TAAATTAAAATGTAATTG
chr5	149960147	149960148	chr5:149960148:G:T	rs77024356	G	T	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr5	150312040	150312041	chr5:150312041:A:G	rs6865726	A	G	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr5	150312079	150312080	chr5:150312080:C:T	rs555456567	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr5	150488321	150488322	chr5:150488322:C:A	rs12519213	C	A	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	150758684	150758685	chr5:150758685:C:G	rs141168099	C	G	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	150961046	150961047	chr5:150961047:G:A	rs10476951	G	A	a	Msx3.mouse_homeodomain_1	0	1	+	9.814136469958832	8.705626914794088	GTAATTAAACGGACATTA
chr5	151087839	151087840	chr5:151087840:G:A	rs2233276	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr5	151671090	151671091	chr5:151671091:C:G	rs17741553	C	G	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr5	152633234	152633235	chr5:152633235:G:A	rs9324734	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	7.58051203810506	6.38356101292965	ACCATTATGCTGTGATTA
chr5	152635647	152635648	chr5:152635648:G:A	rs6895969	G	A	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr5	152642824	152642825	chr5:152642825:T:C	rs4958324	T	C	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr5	153308617	153308618	chr5:153308618:T:A	rs308271	T	A	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	153341424	153341425	chr5:153341425:G:A	rs17583883	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	153495315	153495316	chr5:153495316:A:G	rs59281297	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr5	153658455	153658456	chr5:153658456:G:A	rs2963942	G	A	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr5	153658720	153658721	chr5:153658721:A:G	rs41436549	A	G	A	Msx3.mouse_homeodomain_1	17	1	+	10.079988083052214	7.511828485869011	GTGATTAGGGTGTAATTA
chr5	153675795	153675796	chr5:153675796:T:C	rs13186237	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr5	154164356	154164357	chr5:154164357:G:A	rs142287108	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr5	154260332	154260333	chr5:154260333:A:G	rs1007763	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	9.355911946251567	10.80103460981805	GGAATAATAATGTAATTA
chr5	154260333	154260334	chr5:154260334:C:G	rs2434528	C	G	C	Msx3.mouse_homeodomain_1	11	1	-	9.355911946251567	9.44137748696183	GGAATAATAATGTAATTA
chr5	154614919	154614920	chr5:154614920:T:C	rs67509546	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	10.157367306042374	5.569273087019223	TTAATAAACCAACAATTA
chr5	155011660	155011661	chr5:155011661:A:G	rs139192272	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	155045294	155045295	chr5:155045295:T:A	rs62383084	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	8.179072569146943	2.1001591497890844	TCAATCAGTTGCCAATCA
chr5	155269826	155269827	chr5:155269827:T:G	rs12186822	T	G	T	Msx3.mouse_homeodomain_1	0	1	-	8.774889729756527	9.516047775046658	ATAAGTATAAGCCAATTA
chr5	155530038	155530039	chr5:155530039:A:T	rs1559164	A	T	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr5	155540989	155540990	chr5:155540990:C:T	rs1363738	C	T	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr5	156375249	156375250	chr5:156375250:G:A	rs970475	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr5	156445026	156445027	chr5:156445027:C:T	rs143777149	C	T	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr5	156726387	156726388	chr5:156726388:G:A	rs282466	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr5	157295417	157295418	chr5:157295418:C:T	rs17054431	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr5	157309301	157309302	chr5:157309302:C:T	rs392512	C	T	c	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr5	157384664	157384665	chr5:157384665:C:G	rs112263751	C	G	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr5	157384665	157384666	chr5:157384666:G:A	rs10063539	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr5	157715091	157715092	chr5:157715092:A:G	rs11739943	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	6.45628009027418	2.4868491139053015	GCAATCACACAGCATTTG
chr5	157715097	157715098	chr5:157715098:C:T	rs11749567	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	6.45628009027418	7.348369122345429	GCAATCACACAGCATTTG
chr5	157718397	157718398	chr5:157718398:C:T	rs10053680	C	T	C	Msx3.mouse_homeodomain_1	6	1	-	11.462407418014905	13.90448464494646	GCAATTGTATTGCAATTG
chr5	157962063	157962064	chr5:157962064:A:G	rs76772041	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr5	158056527	158056528	chr5:158056528:A:G	rs1040926	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr5	158465521	158465522	chr5:158465522:C:T	rs2964481	C	T	C	Msx3.mouse_homeodomain_1	6	1	-	8.146423016262094	10.588500243193653	TTAATAGTAGGCCAATTA
chr5	158563172	158563173	chr5:158563173:G:A	rs2914222	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr5	158840414	158840415	chr5:158840415:T:C	rs891905	T	C	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr5	159042091	159042092	chr5:159042092:T:A	rs17056476	T	A	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr5	159133570	159133571	chr5:159133571:C:T	rs148938589	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	159218731	159218732	chr5:159218732:T:C	chr5:159218732:T:C	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	9.058010016008252	6.615932789076696	GCAATCAAAATGCAATCT
chr5	159452524	159452525	chr5:159452525:G:A	rs111849868	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr5	159538766	159538767	chr5:159538767:G:A	rs10476298	G	A	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr5	159774448	159774449	chr5:159774449:G:T	rs543941716	G	T	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr5	159798378	159798379	chr5:159798379:C:A	rs10039732	C	A	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr5	159938706	159938707	chr5:159938707:G:A	rs17057287	G	A	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr5	159942256	159942257	chr5:159942257:C:T	rs4921099	C	T	T	Msx3.mouse_homeodomain_1	10	1	-	9.250349320129645	10.32694049106612	CTAATTACAGGACAATTT
chr5	160106175	160106176	chr5:160106176:G:A	rs73313104	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr5	160476126	160476127	chr5:160476127:G:A	rs2961919	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	160549258	160549259	chr5:160549259:T:C	rs10059502	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr5	162013937	162013938	chr5:162013938:G:A	rs111424366	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	162958778	162958779	chr5:162958779:G:A	rs111721306	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	8.214145716750934	7.017194691575523	CTACTTACATAGCATTTA
chr5	163206816	163206817	chr5:163206817:C:A	rs4868952	C	A	A	Msx3.mouse_homeodomain_1	2	1	+	8.692183797864711	11.074771239335437	CTCATTGAAAAAAAATTA
chr5	163658659	163658660	chr5:163658660:A:C	rs158851	A	C	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr5	163880251	163880252	chr5:163880252:A:G	rs79040663	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	163918041	163918042	chr5:163918042:G:A	rs2544976	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	7.142962691775552	7.472903644491651	TCACTTACCTACCAGTTA
chr5	163918063	163918064	chr5:163918064:G:C	rs10711707	G	C	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr5	164188087	164188088	chr5:164188088:A:G	rs6881493	A	G	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr5	164470135	164470136	chr5:164470136:T:A	rs10515879	T	A	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr5	164967049	164967050	chr5:164967050:A:T	rs6886674	A	T	A	Msx3.mouse_homeodomain_1	4	1	-	10.524345684863839	3.619324139127756	AAAATTAATAATTAATTA
chr5	165466739	165466740	chr5:165466740:T:C	rs3899980	T	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	165474773	165474774	chr5:165474774:A:C	rs72813337	A	C	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr5	165795789	165795790	chr5:165795790:A:G	rs62382074	A	G	a	Msx3.mouse_homeodomain_1	0	1	+	10.701704420239864	11.810213975404608	ATAATTAAAGGACAATTG
chr5	166320199	166320200	chr5:166320200:A:G	rs1540718	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	8.51619565887615	5.99932703093907	ATAATTAAGGCCAGATTA
chr5	167032258	167032259	chr5:167032259:A:G	rs1566632	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr5	167785855	167785856	chr5:167785856:T:G	rs11134470	T	G	T	Msx3.mouse_homeodomain_1	11	1	-	8.470725852577171	9.753142418462843	GAAATTATTTAACACTTA
chr5	168171729	168171730	chr5:168171730:C:A	rs12518736	C	A	T	Msx3.mouse_homeodomain_1	12	1	+	8.056576796017044	5.545268036248217	CAAATCAAATATCCATTA
chr5	168367123	168367124	chr5:168367124:A:G	rs17632921	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	11.496974956012988	5.398429276143854	TTAATAAAGAGGCAATTA
chr5	168481426	168481427	chr5:168481427:G:A	rs116536596	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr5	168734628	168734629	chr5:168734629:C:T	rs78190171	C	T	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr5	168789955	168789956	chr5:168789956:C:T	rs891926	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	168977897	168977898	chr5:168977898:A:G	rs11952796	A	G	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr5	169068005	169068006	chr5:169068006:G:T	rs898574412	G	T	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr5	169085368	169085369	chr5:169085369:G:A	rs296011	G	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr5	169431646	169431647	chr5:169431647:C:T	rs55752502	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr5	169696083	169696084	chr5:169696084:C:A	rs943060885	C	A	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr5	169703680	169703681	chr5:169703681:T:C	rs17736834	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.460724900042757	3.4912939236738794	TCAAATAGATACTAATTA
chr5	169799430	169799431	chr5:169799431:G:C	rs10078064	G	C	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr5	169831886	169831887	chr5:169831887:A:T	rs261633	A	T	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr5	170369821	170369822	chr5:170369822:G:A	rs7726887	G	A	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr5	170533774	170533775	chr5:170533775:T:G	rs7737732	T	G	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	170533809	170533810	chr5:170533810:G:A	rs10072375	G	A	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr5	170533821	170533822	chr5:170533822:G:A	rs10072376	G	A	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr5	171205765	171205766	chr5:171205766:G:T	rs17680353	G	T	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr5	171416855	171416856	chr5:171416856:T:A	rs78452524	T	A	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr5	171494683	171494684	chr5:171494684:G:A	rs182776118	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr5	171777122	171777123	chr5:171777123:T:C	chr5:171777123:T:C	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr5	172114335	172114336	chr5:172114336:A:G	rs73323517	A	G	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr5	172246189	172246190	chr5:172246190:A:C	rs10059170	A	C	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr5	172361372	172361373	chr5:172361373:A:T	rs2731707	A	T	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr5	172469472	172469473	chr5:172469473:G:A	rs72847002	G	A	G	Msx3.mouse_homeodomain_1	5	1	-	9.670630718793596	12.063616461304097	TCAATCAAAAATCACTTA
chr5	172543404	172543405	chr5:172543405:C:T	rs55732063	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr5	172847970	172847971	chr5:172847971:C:T	rs58416015	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr5	173282267	173282268	chr5:173282268:G:A	rs13162731	G	A	A	Msx3.mouse_homeodomain_1	13	1	+	9.460580294157914	11.517854473064112	GCAATTAGATGACGATCA
chr5	173921152	173921153	chr5:173921153:G:A	rs10516107	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr5	174165785	174165786	chr5:174165786:A:G	rs7710772	A	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr5	174309559	174309560	chr5:174309560:A:G	rs2936921	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	8.625394331530305	4.037300112507154	TAAATTAAAAACCCATCA
chr5	174309567	174309568	chr5:174309568:G:A	rs79333712	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	174333238	174333239	chr5:174333239:G:C	rs2936978	G	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr5	174444718	174444719	chr5:174444719:G:A	rs794736	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr5	174501958	174501959	chr5:174501959:C:T	rs354991	C	T	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr5	174674792	174674793	chr5:174674793:T:C	rs10051976	T	C	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr5	175197735	175197736	chr5:175197736:C:T	rs115583637	C	T	c	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr5	175347281	175347282	chr5:175347282:A:G	rs17064931	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.54329253953096	3.9551983205078107	GTCATTAGGTATAAATTA
chr5	175470929	175470930	chr5:175470930:T:C	rs2644647	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	12.268244845749027	9.751376217811949	TCACTTAGAAGCCAATTA
chr5	176173187	176173188	chr5:176173188:A:G	rs114833306	A	G	a	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr5	178734185	178734186	chr5:178734186:G:A	rs35587840	G	A	g	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr5	178903172	178903173	chr5:178903173:C:T	rs10043579	C	T	T	Msx3.mouse_homeodomain_1	0	1	-	8.61148838096203	7.5029788257972845	GTAATTGCATTCCATTTA
chr5	179023462	179023463	chr5:179023463:T:C	rs113322031	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr5	179475026	179475027	chr5:179475027:T:G	rs35431667	T	G	T	Msx3.mouse_homeodomain_1	6	1	-	8.019776854571681	3.7747610480995197	CAAATTAAATTGCCCTTA
chr5	179479577	179479578	chr5:179479578:C:T	rs10055077	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr5	180233300	180233301	chr5:180233301:C:A	rs543558893	C	A	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr5	180417523	180417524	chr5:180417524:T:C	rs7380019	T	C	t	Msx3.mouse_homeodomain_1	8	1	-	6.635907375482222	5.629358042637015	CTGATCACATGCCCATTA
chr5	180473477	180473478	chr5:180473478:G:A	rs76383453	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr5	181176541	181176542	chr5:181176542:C:G	rs2770986	C	G	-	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr6	169151	169152	chr6:169152:C:A	rs202175158	C	A	c	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	223038	223039	chr6:223039:T:C	rs2143738	T	C	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr6	593840	593841	chr6:593841:T:C	rs3823127	T	C	t	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr6	709752	709753	chr6:709753:C:A	rs72837941	C	A	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr6	709764	709765	chr6:709765:G:A	rs11968829	G	A	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr6	812135	812136	chr6:812136:A:G	rs9505233	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	1778347	1778348	chr6:1778348:T:C	rs115618500	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	7.7067591661141455	5.264681939182587	TCAATCAGTATTCCATTA
chr6	1850277	1850278	chr6:1850278:C:T	rs62388422	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr6	1850290	1850291	chr6:1850291:C:A	rs11963926	C	A	A	Msx3.mouse_homeodomain_1	2	1	+	9.488855093083313	11.871442534554038	CTCATTAGAAACTCATTA
chr6	2005045	2005046	chr6:2005046:A:T	rs144044641	A	T	A	Msx3.mouse_homeodomain_1	9	1	+	8.69963436188706	8.28549309001398	GTACTTAAGAAGTACTTA
chr6	2038792	2038793	chr6:2038793:G:A	rs9503076	G	A	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr6	2355140	2355141	chr6:2355141:C:G	rs2505676	C	G	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	2369257	2369258	chr6:2369258:G:A	rs9503155	G	A	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr6	2989659	2989660	chr6:2989660:A:G	rs6926159	A	G	a	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr6	2989664	2989665	chr6:2989665:G:T	rs115062071	G	T	t	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr6	2989673	2989674	chr6:2989674:G:A	rs116749297	G	A	g	Msx3.mouse_homeodomain_1	13	1	-	6.571554843381336	5.273339437018746	CCAATTCCATAGCCATTG
chr6	2989689	2989690	chr6:2989690:G:T	rs190690319	G	T	g	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr6	3038021	3038022	chr6:3038022:T:A	rs6937771	T	A	A	Msx3.mouse_homeodomain_1	15	1	+	8.146452846484	2.067539427126143	ATAATCGAAAGCAAATTA
chr6	3090255	3090256	chr6:3090256:T:C	rs12110700	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	8.947671662670643	2.849125982801509	CCAGTTAGGAACCAATCA
chr6	3090288	3090289	chr6:3090289:A:C	chr6:3090289:A:C	A	C	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr6	3369000	3369001	chr6:3369001:T:C	rs9503566	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr6	3467510	3467511	chr6:3467511:G:T	rs7745968	G	T	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr6	3818455	3818456	chr6:3818456:G:A	rs9328194	G	A	A	Msx3.mouse_homeodomain_1	4	1	+	8.60306148578513	7.35602919199875	GCAAGTAAATAACAATTG
chr6	3818473	3818474	chr6:3818474:A:G	rs9328195	A	G	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	3861599	3861600	chr6:3861600:G:A	rs2490049	G	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	4563882	4563883	chr6:4563883:C:T	rs441034	C	T	c	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr6	4581493	4581494	chr6:4581494:T:C	rs11962707	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	8.47927143329936	2.380725753430227	TCCATTGAAGTGAAATTA
chr6	4780690	4780691	chr6:4780691:G:A	rs9502237	G	A	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	5102393	5102394	chr6:5102394:T:C	rs461144	T	C	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	5659631	5659632	chr6:5659632:A:G	rs10484315	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.150430825425897	4.180999849057018	TTCATCAAAAACCACTTA
chr6	5981279	5981280	chr6:5981280:G:C	rs2146447	G	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr6	6687524	6687525	chr6:6687525:T:C	rs115835863	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	6782064	6782065	chr6:6782065:A:G	rs4960246	A	G	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	6901622	6901623	chr6:6901623:T:C	rs9379066	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	8.536105458070288	5.411156304476434	CTAATTAACATACAAATA
chr6	7475786	7475787	chr6:7475787:G:T	rs2806193	G	T	g	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	7671930	7671931	chr6:7671931:A:G	rs139608301	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr6	7806614	7806615	chr6:7806615:A:C	rs2876113	A	C	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	7978492	7978493	chr6:7978493:G:A	rs9502670	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	5.90151517571961	6.908064508564819	GCAACTGTGGGCCAATTA
chr6	8239583	8239584	chr6:8239584:T:C	rs113465798	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	8392200	8392201	chr6:8392201:G:A	rs1199391	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	9095632	9095633	chr6:9095633:G:A	rs9378586	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	9507014	9507015	chr6:9507015:G:C	rs2876168	G	C	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr6	9802134	9802135	chr6:9802135:T:A	rs34314184	T	A	T	Msx3.mouse_homeodomain_1	17	1	-	8.976617466549364	5.605831270670565	GTAATTCATTTCAAATTA
chr6	10018520	10018521	chr6:10018521:A:G	rs9383331	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	10105692	10105693	chr6:10105693:C:A	chr6:10105693:C:A	C	A	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	10271977	10271978	chr6:10271978:G:A	rs9465751	G	A	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	10391080	10391081	chr6:10391081:T:C	rs580416	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr6	10481156	10481157	chr6:10481157:T:C	rs502431	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	8.848255969566402	6.331387341629326	TCAATTAGATTGGCATTA
chr6	10565844	10565845	chr6:10565845:T:C	rs9466768	T	C	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	10657713	10657714	chr6:10657714:A:G	chr6:10657714:A:G	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	8.876501400982978	10.32162406454946	CCAATTAAACTTTATTTA
chr6	10657713	10657714	chr6:10657714:A:T	rs56196505	A	T	A	Msx3.mouse_homeodomain_1	12	1	-	8.876501400982978	7.810315304780633	CCAATTAAACTTTATTTA
chr6	10801331	10801332	chr6:10801332:A:G	rs499798	A	G	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr6	11004327	11004328	chr6:11004328:C:G	rs1323739	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	7.2391847914801355	3.9748359344518196	GCCATTATCCACCGCTTA
chr6	11229165	11229166	chr6:11229166:C:G	rs72827149	C	G	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr6	11326397	11326398	chr6:11326398:T:C	rs17499316	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	7.961515469301744	7.0694264372304945	GTACTGATCTACCAATTA
chr6	11414942	11414943	chr6:11414943:C:T	rs7759515	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr6	11543108	11543109	chr6:11543109:A:G	rs566237	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr6	11672464	11672465	chr6:11672465:T:G	rs1150590	T	G	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr6	11682789	11682790	chr6:11682790:A:G	rs548095839	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr6	11712754	11712755	chr6:11712755:A:G	rs9469927	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	8.397342877233896	9.84246554080038	ACAATAACACACTGATTA
chr6	12217954	12217955	chr6:12217955:C:T	rs62388204	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	5.853831938566356	5.005989067685669	GCCATTGCCAAGCCATTG
chr6	13159658	13159659	chr6:13159659:T:C	rs1223541	T	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr6	13920784	13920785	chr6:13920785:T:C	rs1330118	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.677942086569479	3.708511110200602	CTCATTACTATCTCATTA
chr6	14452206	14452207	chr6:14452207:G:A	rs114837091	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr6	14464031	14464032	chr6:14464032:T:C	rs9370743	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr6	14584164	14584165	chr6:14584165:T:C	rs6459366	T	C	t	Msx3.mouse_homeodomain_1	13	1	-	8.235563844033528	6.1782896651273305	CCTATTAAGGTCCATTTA
chr6	14682901	14682902	chr6:14682902:G:T	rs66534319	G	T	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	14800472	14800473	chr6:14800473:A:G	rs6935179	A	G	G	Msx3.mouse_homeodomain_1	5	1	-	8.23520248561353	5.842216743103029	TCGATTGACATATAATTA
chr6	15171388	15171389	chr6:15171389:G:A	rs12524357	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	6.911858361787597	5.466735698221114	GTAATCACTATCCCATTG
chr6	15249820	15249821	chr6:15249821:G:A	rs2295954	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr6	15249845	15249846	chr6:15249846:A:G	rs4715970	A	G	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	15265667	15265668	chr6:15265668:G:T	rs75049360	G	T	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	15453351	15453352	chr6:15453352:T:C	rs2299045	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr6	15455162	15455163	chr6:15455163:T:C	rs9370814	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr6	15522869	15522870	chr6:15522870:T:C	rs1047631	T	C	T	Msx3.mouse_homeodomain_1	7	1	+	9.126457494721489	8.796516542005389	GCAATTATGTAAAAATCA
chr6	15533809	15533810	chr6:15533810:T:C	rs562961416	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.437750834531963	4.849656615508811	GCAATTGCACTGCAATTT
chr6	15627849	15627850	chr6:15627850:A:G	rs12527496	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr6	15897909	15897910	chr6:15897910:A:G	rs139459618	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr6	15936439	15936440	chr6:15936440:C:T	rs61259710	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	15950586	15950587	chr6:15950587:A:G	rs1935785	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr6	15957885	15957886	chr6:15957886:A:C	rs9358075	A	C	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr6	16115563	16115564	chr6:16115564:T:G	rs9370865	T	G	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	16367312	16367313	chr6:16367313:T:C	rs148952167	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr6	16437688	16437689	chr6:16437689:A:G	rs2237197	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	10.45874527985045	4.360199599981319	TTAATCAAATTATAATTA
chr6	16681825	16681826	chr6:16681826:T:C	rs2181542	T	C	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr6	16681859	16681860	chr6:16681860:C:T	rs6923746	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr6	16719126	16719127	chr6:16719127:G:A	rs17670444	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr6	16875901	16875902	chr6:16875902:G:A	rs9477242	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr6	17086440	17086441	chr6:17086441:C:T	rs17621412	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	8.16505032860735	7.056540773442607	GTACTAATACACTAATTA
chr6	17523080	17523081	chr6:17523081:G:T	rs9477468	G	T	T	Msx3.mouse_homeodomain_1	7	1	-	7.4388140855881995	8.828700632292957	GCAATTCCTAAGTCATTA
chr6	18211628	18211629	chr6:18211629:G:A	rs138207665	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr6	18371861	18371862	chr6:18371862:T:C	rs73374100	T	C	t	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr6	18613867	18613868	chr6:18613868:C:T	rs17642987	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr6	18690778	18690779	chr6:18690779:C:T	rs9368017	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr6	18931131	18931132	chr6:18931132:A:G	rs2152046	A	G	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr6	19289556	19289557	chr6:19289557:C:T	rs12202040	C	T	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	19413455	19413456	chr6:19413456:G:A	rs9348375	G	A	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	19448490	19448491	chr6:19448491:C:T	rs10946316	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr6	19590765	19590766	chr6:19590766:T:C	rs185256013	T	C	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr6	19639041	19639042	chr6:19639042:A:G	rs1936897	A	G	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr6	19856469	19856470	chr6:19856470:T:G	rs9460424	T	G	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr6	20207694	20207695	chr6:20207695:T:C	rs1536580	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	8.818479920205942	7.926390888134693	CAAATTAGTTTGGAATTA
chr6	21020079	21020080	chr6:21020080:C:A	rs75595024	C	A	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr6	21245737	21245738	chr6:21245738:A:G	rs2045546	A	G	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr6	21648853	21648854	chr6:21648854:G:A	rs1740828	G	A	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr6	21780633	21780634	chr6:21780634:C:G	rs145388069	C	G	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr6	21942986	21942987	chr6:21942987:C:T	rs10946489	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr6	22452287	22452288	chr6:22452288:T:C	rs35835538	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr6	22452298	22452299	chr6:22452299:A:C	rs60380354	A	C	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr6	22452320	22452321	chr6:22452321:A:G	rs35661144	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	10.458998351564272	4.360452671695137	CCAATAAAATTGCAATAA
chr6	22590924	22590925	chr6:22590925:C:A	rs7757111	C	A	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr6	22721407	22721408	chr6:22721408:C:A	rs9460777	C	A	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	22800391	22800392	chr6:22800392:C:G	rs10484712	C	G	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	22809565	22809566	chr6:22809566:T:C	rs35349492	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.853753852382577	3.884322876013698	CCAATTTCATTGTCATTA
chr6	22913725	22913726	chr6:22913726:A:T	rs4711039	A	T	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr6	23042811	23042812	chr6:23042812:C:T	rs115012330	C	T	C	Msx3.mouse_homeodomain_1	2	1	-	9.276491076932295	11.79335970486937	GTGATTAAGTTGCAATAA
chr6	23280495	23280496	chr6:23280496:T:C	rs74988836	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	23678626	23678627	chr6:23678627:C:T	rs7738154	C	T	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr6	23736619	23736620	chr6:23736620:C:T	rs2328791	C	T	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr6	23785124	23785125	chr6:23785125:G:C	rs2182074	G	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr6	23887704	23887705	chr6:23887705:G:A	rs73741001	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr6	24500900	24500901	chr6:24500901:T:G	rs4646834	T	G	T	Msx3.mouse_homeodomain_1	10	1	-	10.146062270388198	8.608518446539358	CTAATTAAAAAAAAATTT
chr6	24522531	24522532	chr6:24522532:G:A	rs61208485	G	A	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr6	24658893	24658894	chr6:24658894:A:G	rs6907640	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr6	24756548	24756549	chr6:24756549:C:T	rs111718932	C	T	c	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	25088690	25088691	chr6:25088691:G:T	rs16890032	G	T	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr6	25176795	25176796	chr6:25176796:T:C	rs79581740	T	C	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr6	25239443	25239444	chr6:25239444:T:A	rs35133360	T	A	T	Msx3.mouse_homeodomain_1	16	1	+	9.908574646118282	6.023736718595224	TGAATTAAGAATTAATTA
chr6	25337202	25337203	chr6:25337203:G:C	rs2690079	G	C	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	25472261	25472262	chr6:25472262:A:G	rs41271813	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	25963279	25963280	chr6:25963280:C:T	rs80167307	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	25965319	25965320	chr6:25965320:C:T	rs75599622	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr6	25965323	25965324	chr6:25965324:A:G	rs1347567	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr6	25988129	25988130	chr6:25988130:T:C	rs77164087	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	26172810	26172811	chr6:26172811:G:A	rs7773964	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr6	26172842	26172843	chr6:26172843:T:A	rs73736554	T	A	t	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	26172843	26172844	chr6:26172844:A:T	rs113895360	A	T	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	26240385	26240386	chr6:26240386:C:T	rs148604503	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	26275756	26275757	chr6:26275757:A:G	rs73395313	A	G	.	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	26291214	26291215	chr6:26291215:G:T	rs116681984	G	T	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr6	26327868	26327869	chr6:26327869:A:G	rs75722085	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr6	26327883	26327884	chr6:26327884:A:G	chr6:26327884:A:G	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.966112092710712	1.0586468557867064	ACAATGAAATATCCATTA
chr6	27772866	27772867	chr6:27772867:A:G	rs9380018	A	G	a	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr6	27866325	27866326	chr6:27866326:A:G	rs181969845	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr6	27866328	27866329	chr6:27866329:C:T	rs142208525	C	T	c	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr6	27866344	27866345	chr6:27866345:G:C	rs200074597	G	C	G	Msx3.mouse_homeodomain_1	11	1	-	7.927993114936266	7.842527574226002	TCTATTACATGCCAATTT
chr6	27866345	27866346	chr6:27866346:C:A	rs201265112	C	A	C	Msx3.mouse_homeodomain_1	10	1	-	7.927993114936266	8.51101276189762	TCTATTACATGCCAATTT
chr6	27866360	27866361	chr6:27866361:C:G	rs13199906	C	G	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	28335006	28335007	chr6:28335007:A:G	rs1416920	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	9.947279576181291	5.3591853571581405	CTTATTAAATAAAAATTA
chr6	28394693	28394694	chr6:28394694:T:C	rs16894060	T	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr6	28981428	28981429	chr6:28981429:G:C	rs9257445	G	C	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr6	29779350	29779351	chr6:29779351:T:C	rs577665714	T	C	t	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr6	29814855	29814856	chr6:29814856:T:C	rs1736957	T	C	-	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	29924385	29924386	chr6:29924386:T:C	rs55676227	T	C	-	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr6	29924418	29924419	chr6:29924419:A:T	rs2517784	A	T	-	Msx3.mouse_homeodomain_1	1	1	-	12.145639894259201	10.29319338819942	CTAATTAAAAAGAAATTG
chr6	29924425	29924426	chr6:29924426:C:A	rs1611422	C	A	-	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr6	29924429	29924430	chr6:29924430:G:T	rs113421766	G	T	-	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	29953995	29953996	chr6:29953996:T:C	rs9260555	T	C	-	Msx3.mouse_homeodomain_1	4	1	+	10.007417215806223	3.9088715359370894	ACAATTAGACCGCAATTT
chr6	29954024	29954025	chr6:29954025:G:A	rs55975201	G	A	-	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr6	29964853	29964854	chr6:29964854:A:T	rs780395384	A	T	-	Msx3.mouse_homeodomain_1	5	1	+	12.440017268492092	15.261419315648475	GGAATAAAAAACCAATTA
chr6	30149323	30149324	chr6:30149324:T:C	rs9261519	T	C	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	30234177	30234178	chr6:30234178:G:A	rs916571	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	30326141	30326142	chr6:30326142:G:C	rs28588845	G	C	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr6	30531821	30531822	chr6:30531822:T:C	rs61123281	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	8.482544027125329	1.5750787902013221	GTAATTTAGTACCTATTA
chr6	30616470	30616471	chr6:30616471:C:T	chr6:30616471:C:T	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.245569513262918	7.397726642382233	ACACTTACTATCCAATTT
chr6	30717436	30717437	chr6:30717437:G:A	rs760362371	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	30748339	30748340	chr6:30748340:G:T	rs4713358	G	T	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr6	30854713	30854714	chr6:30854714:A:G	rs141089412	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr6	30939623	30939624	chr6:30939624:C:T	rs75205812	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	31107703	31107704	chr6:31107704:A:G	rs2844635	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr6	31427085	31427086	chr6:31427086:T:G	rs59076819	T	G	-	Msx3.mouse_homeodomain_1	14	1	+	7.070712893295727	6.809379025622133	CTAATCAGCTGCCATTTA
chr6	31427091	31427092	chr6:31427092:A:G	rs60484313	A	G	-	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	31526960	31526961	chr6:31526961:C:A	rs2734573	C	A	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	31619217	31619218	chr6:31619218:G:A	rs190431129	G	A	g	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr6	32344573	32344574	chr6:32344574:C:T	rs7383143	C	T	c	Msx3.mouse_homeodomain_1	9	1	-	8.973748488463364	9.914292480849511	GCAATTGGCGTGCACTTA
chr6	32344575	32344576	chr6:32344576:C:T	rs7383144	C	T	T	Msx3.mouse_homeodomain_1	7	1	-	8.973748488463364	10.08356402578696	GCAATTGGCGTGCACTTA
chr6	32432007	32432008	chr6:32432008:A:G	rs3129857	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	9.000322342517268	10.108831897682013	AAAATTACAAACCATTTA
chr6	32590023	32590024	chr6:32590024:A:G	rs28366229	A	G	.	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr6	32590034	32590035	chr6:32590035:C:T	rs9270326	C	T	.	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr6	32613475	32613476	chr6:32613476:A:G	rs9271287	A	G	.	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	32613482	32613483	chr6:32613483:A:G	rs9271288	A	G	.	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr6	32613527	32613528	chr6:32613528:C:T	rs9271289	C	T	.	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr6	32621732	32621733	chr6:32621733:A:G	rs9271512	A	G	.	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr6	32632140	32632141	chr6:32632141:T:C	rs9272104	T	C	.	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	32663554	32663555	chr6:32663555:A:G	rs9274250	A	G	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	32663567	32663568	chr6:32663568:A:C	rs9274252	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	9.129366503650616	2.221901266726609	GTAATCAGCCCACAATTA
chr6	32667854	32667855	chr6:32667855:A:G	rs4516985	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	32667884	32667885	chr6:32667885:C:T	rs9274605	C	T	c	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr6	33014745	33014746	chr6:33014746:G:C	rs381869	G	C	G	Msx3.mouse_homeodomain_1	12	1	-	8.319604809130631	4.820221790514472	ACATTTAAAAAGCAATAA
chr6	34415990	34415991	chr6:34415991:C:T	rs544019776	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	7.732165130761943	6.908574386501765	CCAATTATTGTCCATTTG
chr6	34596109	34596110	chr6:34596110:G:C	rs205261	G	C	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	35255359	35255360	chr6:35255360:T:G	rs1929847	T	G	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr6	35313007	35313008	chr6:35313008:A:G	rs9469989	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr6	35728847	35728848	chr6:35728848:A:C	chr6:35728848:A:C	A	C	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr6	36333334	36333335	chr6:36333335:T:A	rs115679056	T	A	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr6	36430784	36430785	chr6:36430785:G:A	rs546272	G	A	a	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr6	36533359	36533360	chr6:36533360:A:C	rs9462193	A	C	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	36595351	36595352	chr6:36595352:T:C	rs3756907	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr6	36595382	36595383	chr6:36595383:T:C	rs73408322	T	C	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	36607054	36607055	chr6:36607055:A:T	rs7755461	A	T	T	Msx3.mouse_homeodomain_1	4	1	-	11.368057747852038	4.463036202115959	AAAATTATGAAACAATTA
chr6	36653755	36653756	chr6:36653756:T:C	rs4713994	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	7.018407501165753	4.961133322259556	TCCATCACAGAGCAATCA
chr6	36686964	36686965	chr6:36686965:G:A	rs3176359	G	A	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	36919220	36919221	chr6:36919221:T:C	rs73420362	T	C	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr6	37110457	37110458	chr6:37110458:G:A	rs147123844	G	A	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	37517071	37517072	chr6:37517072:C:T	rs73730780	C	T	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr6	37590201	37590202	chr6:37590202:G:A	rs1776441	G	A	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	37723184	37723185	chr6:37723185:G:A	rs9632491	G	A	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr6	37742274	37742275	chr6:37742275:T:G	chr6:37742275:T:G	T	G	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	37742296	37742297	chr6:37742297:G:A	rs77509079	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	7.363722971180301	8.370272304025509	TTAATCAGGGGGAAATTA
chr6	37863029	37863030	chr6:37863030:C:T	rs190634461	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	38372322	38372323	chr6:38372323:T:C	rs1883610	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr6	38730270	38730271	chr6:38730271:G:A	rs72858210	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr6	38907749	38907750	chr6:38907750:G:A	rs9369091	G	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr6	40276161	40276162	chr6:40276162:C:T	rs1344616885	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	40912004	40912005	chr6:40912005:A:T	rs113491720	A	T	A	Msx3.mouse_homeodomain_1	3	1	+	8.05414578669963	2.926795446551537	CCAATTAAATCAGAATTT
chr6	40932297	40932298	chr6:40932298:T:G	rs12662595	T	G	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr6	41226884	41226885	chr6:41226885:C:T	rs6916157	C	T	-	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	41330447	41330448	chr6:41330448:A:G	rs2894435	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr6	41560830	41560831	chr6:41560831:T:C	chr6:41560831:T:C	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	41709143	41709144	chr6:41709144:T:C	rs6930504	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr6	41762820	41762821	chr6:41762821:G:C	rs114945936	G	C	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	41997513	41997514	chr6:41997514:T:C	rs6927373	T	C	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	42006004	42006005	chr6:42006005:A:T	rs12210079	A	T	A	Msx3.mouse_homeodomain_1	16	1	-	10.146062270388198	6.261224342865139	CTAATTAAAAAAAAATTT
chr6	42006005	42006006	chr6:42006006:A:T	rs4711696	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	10.146062270388198	4.067148851030341	CTAATTAAAAAAAAATTT
chr6	42200262	42200263	chr6:42200263:C:G	rs2180173	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	9.120303529207423	5.855954672179106	GCCATTACACACCATTTA
chr6	42200290	42200291	chr6:42200291:G:C	rs1142723	G	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr6	42726514	42726515	chr6:42726515:C:T	rs78027679	C	T	C	Msx3.mouse_homeodomain_1	6	1	-	8.717169980232272	11.159247207163832	ACAATTGTCTTCCAATTT
chr6	43191563	43191564	chr6:43191564:T:G	rs74839491	T	G	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr6	43837070	43837071	chr6:43837071:G:C	rs2396083	G	C	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	43837087	43837088	chr6:43837088:A:G	rs2396084	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr6	44431439	44431440	chr6:44431440:A:G	rs116230878	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.32613397859252	1.418668741668513	GATATTAGATCACAATTA
chr6	44431451	44431452	chr6:44431452:T:G	rs564990	T	G	G	Msx3.mouse_homeodomain_1	3	1	-	8.32613397859252	5.4459596140596185	GATATTAGATCACAATTA
chr6	44431452	44431453	chr6:44431453:A:G	rs564988	A	G	G	Msx3.mouse_homeodomain_1	2	1	-	8.32613397859252	9.098974155334414	GATATTAGATCACAATTA
chr6	44479860	44479861	chr6:44479861:G:A	rs9357446	G	A	g	Msx3.mouse_homeodomain_1	1	1	+	9.485273069054127	10.04933254914198	CGAATTAGATACCAATAA
chr6	45338369	45338370	chr6:45338370:C:G	rs10948227	C	G	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	45554755	45554756	chr6:45554756:G:C	rs1711940	G	C	G	Msx3.mouse_homeodomain_1	11	1	-	9.138815143535226	9.053349602824962	ATAATAAGAAACGAATTA
chr6	45584873	45584874	chr6:45584874:G:A	rs11751184	G	A	.	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr6	45590382	45590383	chr6:45590383:A:G	rs373882777	A	G	.	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	45592366	45592367	chr6:45592367:G:C	rs74548726	G	C	.	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr6	45956701	45956702	chr6:45956702:C:T	rs2396580	C	T	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	46129351	46129352	chr6:46129352:A:G	rs139142286	A	G	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr6	46485024	46485025	chr6:46485025:G:A	rs78268152	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	46968013	46968014	chr6:46968014:T:C	rs1889580	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr6	47034280	47034281	chr6:47034281:T:C	rs116018772	T	C	T	Msx3.mouse_homeodomain_1	5	1	-	8.925751814296035	7.30457208398525	TTGATAAAAGAACAATTA
chr6	47170851	47170852	chr6:47170852:A:C	chr6:47170852:A:C	A	C	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr6	47380455	47380456	chr6:47380456:G:A	rs9349401	G	A	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr6	47479304	47479305	chr6:47479305:T:A	rs4715019	T	A	T	Msx3.mouse_homeodomain_1	5	1	+	8.6027588729264	5.781356825770018	GTAATTAACAAATGATTT
chr6	47570393	47570394	chr6:47570394:A:G	rs12200492	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.85625148340248	3.8868205070336033	GCAATTCAAGGACAATCA
chr6	48472458	48472459	chr6:48472459:T:G	rs2396865	T	G	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr6	48512375	48512376	chr6:48512376:G:C	rs16877528	G	C	G	Msx3.mouse_homeodomain_1	11	1	+	9.087848175737157	9.17331371644742	CCAACCAAAATGCAATTA
chr6	48513123	48513124	chr6:48513124:C:T	rs1011882492	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	7.501597285814784	6.304646260639375	CCAATTAACTCGTCATTT
chr6	48862180	48862181	chr6:48862181:G:C	rs12664992	G	C	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr6	48917360	48917361	chr6:48917361:A:G	rs12190836	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	49002666	49002667	chr6:49002667:C:G	rs9357596	C	G	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	49002706	49002707	chr6:49002707:G:T	rs144699927	G	T	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	49328116	49328117	chr6:49328117:C:T	rs13202740	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr6	49328123	49328124	chr6:49328124:C:T	rs913110515	C	T	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	49823758	49823759	chr6:49823759:G:T	rs12194388	G	T	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr6	50521392	50521393	chr6:50521393:T:A	rs969286782	T	A	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr6	50875615	50875616	chr6:50875616:G:A	rs1157986	G	A	g	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	51495004	51495005	chr6:51495005:G:A	rs4715221	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	9.177174198831928	8.329331327951241	TCAATAAATTACCAATAA
chr6	52225706	52225707	chr6:52225707:G:A	rs34554839	G	A	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr6	52995971	52995972	chr6:52995972:T:G	chr6:52995972:T:G	T	G	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr6	52995983	52995984	chr6:52995984:T:G	rs35566933	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	9.107792323336351	4.520935742209842	AAAATTAAAAAACATTTA
chr6	53090343	53090344	chr6:53090344:A:G	rs2744454	A	G	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr6	53512751	53512752	chr6:53512752:A:G	rs634657	A	G	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	53583774	53583775	chr6:53583775:G:C	rs613700	G	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr6	53703016	53703017	chr6:53703017:T:A	rs4533979	T	A	T	Msx3.mouse_homeodomain_1	1	1	+	9.31737228923336	7.464925783173582	GTCATTAAAAGGTAATTT
chr6	53758110	53758111	chr6:53758111:A:C	rs4345397	A	C	C	Msx3.mouse_homeodomain_1	5	1	-	8.249681962461402	3.807100184994237	TCAATTACTTGACAATAA
chr6	53975156	53975157	chr6:53975157:T:C	rs62396286	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	54019571	54019572	chr6:54019572:G:A	rs116213400	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr6	54282655	54282656	chr6:54282656:A:G	rs79658365	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	54282688	54282689	chr6:54282689:A:G	rs141687492	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr6	54574931	54574932	chr6:54574932:G:A	rs9382368	G	A	A	Msx3.mouse_homeodomain_1	13	1	+	8.535031286515697	10.592305465421894	TAACTTAAAAGGCGATTA
chr6	54718536	54718537	chr6:54718537:C:T	rs981682	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	54719251	54719252	chr6:54719252:A:G	rs12527080	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr6	54978807	54978808	chr6:54978808:A:C	rs3125287	A	C	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	55117649	55117650	chr6:55117650:A:G	rs12207088	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	11.502927370676943	6.914833151653796	TTAATTACAGAGCAATTG
chr6	55453453	55453454	chr6:55453454:C:T	rs12196586	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr6	55560588	55560589	chr6:55560589:C:T	rs9367641	C	T	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	55576275	55576276	chr6:55576276:C:T	rs6459085	C	T	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	55758677	55758678	chr6:55758678:A:G	rs73453340	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	8.173803263303395	7.281714231232148	GCAATTCATTAGTAATCA
chr6	56279559	56279560	chr6:56279560:T:C	rs72645374	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	6.665054475123129	-0.24241076180087684	CCCATTCCATTCCAATTG
chr6	56448130	56448131	chr6:56448131:C:T	rs7750332	C	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr6	56628274	56628275	chr6:56628275:C:G	rs41271878	C	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr6	57731011	57731012	chr6:57731012:C:T	rs1363617558	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	57936879	57936880	chr6:57936880:T:C	rs2049928	T	C	.	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr6	57936894	57936895	chr6:57936895:A:G	rs2049929	A	G	.	Msx3.mouse_homeodomain_1	2	1	+	8.953954265536595	6.437085637599517	GCACTTATTAATCCATTA
chr6	60565148	60565149	chr6:60565149:A:G	rs12527294	A	G	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	62074170	62074171	chr6:62074171:C:G	rs75064063	C	G	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	62507241	62507242	chr6:62507242:C:T	rs116378934	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	63663826	63663827	chr6:63663827:A:G	rs78115391	A	G	A	Msx3.mouse_homeodomain_1	10	1	-	10.666926975834844	9.622954675961129	GCAATAAAGGTGAAATTA
chr6	63927484	63927485	chr6:63927485:T:C	rs1000679	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr6	64258401	64258402	chr6:64258402:G:A	rs2057160	G	A	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	64776666	64776667	chr6:64776667:C:T	rs73768415	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr6	64955604	64955605	chr6:64955605:A:G	rs1380125459	A	G	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr6	64955648	64955649	chr6:64955649:G:A	rs9360100	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr6	66444475	66444476	chr6:66444476:A:C	rs9294702	A	C	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	66444524	66444525	chr6:66444525:G:A	rs9342552	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr6	66702857	66702858	chr6:66702858:T:C	rs6928259	T	C	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr6	66702858	66702859	chr6:66702859:G:C	rs74707227	G	C	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	66717864	66717865	chr6:66717865:T:G	rs11751187	T	G	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	67348331	67348332	chr6:67348332:T:C	rs558909993	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	67505174	67505175	chr6:67505175:A:G	rs3897726	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	68634576	68634577	chr6:68634577:T:C	rs530316276	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.114312501783866	4.144881525414988	GCAATTAACATCTTATTT
chr6	68756876	68756877	chr6:68756877:T:G	rs12211047	T	G	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	68881987	68881988	chr6:68881988:T:C	rs562537	T	C	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr6	69139310	69139311	chr6:69139311:C:T	rs11759629	C	T	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	69528218	69528219	chr6:69528219:A:T	rs2757772	A	T	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr6	69837674	69837675	chr6:69837675:G:A	rs2066243	G	A	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	69863769	69863770	chr6:69863770:C:A	rs2502555	C	A	A	Msx3.mouse_homeodomain_1	9	1	+	7.868846197041505	9.175076500985838	GCAATTACTCAGAATTTA
chr6	70220896	70220897	chr6:70220897:T:C	rs540654	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	70994669	70994670	chr6:70994670:G:A	rs2881683	G	A	G	Msx3.mouse_homeodomain_1	13	1	-	8.911637289671104	7.613421883308513	GTAATTAAAAACACATTT
chr6	71040810	71040811	chr6:71040811:G:A	rs79418941	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr6	71198288	71198289	chr6:71198289:A:G	rs79367580	A	G	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr6	71227356	71227357	chr6:71227357:C:T	rs12665552	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.683802294703778	7.835959423823092	CCAATAAAGAGCTAATCA
chr6	71403518	71403519	chr6:71403519:C:T	rs72923452	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	8.805558354334455	9.812107687179662	CTACTTTAGGAGCAATTA
chr6	71675607	71675608	chr6:71675608:G:A	rs4706488	G	A	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	71743002	71743003	chr6:71743003:G:A	rs9446459	G	A	A	Msx3.mouse_homeodomain_1	11	1	+	11.555643627567804	10.358692602392392	GCAATGGAAAAGCAATTA
chr6	72076483	72076484	chr6:72076484:C:T	rs80200934	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr6	72205014	72205015	chr6:72205015:A:G	rs2463754	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	72219421	72219422	chr6:72219422:C:A	rs1852706	C	A	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr6	72425385	72425386	chr6:72425386:T:C	rs72937437	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	72623466	72623467	chr6:72623467:A:G	rs11758568	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	8.431186337253404	7.539097305182156	CCAATCATTTTCTCATTA
chr6	72968970	72968971	chr6:72968971:C:T	rs76309870	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr6	73076213	73076214	chr6:73076214:G:A	rs6921049	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	73140440	73140441	chr6:73140441:G:A	rs73454734	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr6	73140455	73140456	chr6:73140456:T:C	rs16883384	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.78298253417863	4.8135515578097525	GTCATTATCAGGCAATTT
chr6	73451315	73451316	chr6:73451316:A:G	rs140840411	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	9.27945143553173	7.222177256625531	GAAATTAGCCAGCAATCA
chr6	74075804	74075805	chr6:74075805:C:T	rs77683835	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr6	74091293	74091294	chr6:74091294:T:C	rs9360737	T	C	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	74091321	74091322	chr6:74091322:T:C	rs9350522	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr6	74535146	74535147	chr6:74535147:G:A	rs7763091	G	A	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	74932565	74932566	chr6:74932566:C:T	rs11751258	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr6	75418484	75418485	chr6:75418485:T:C	rs894189566	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	8.18935276119408	1.2818875242700767	ACAATTACAGACTCATTG
chr6	75418487	75418488	chr6:75418488:T:G	rs1457158226	T	G	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr6	75913246	75913247	chr6:75913247:G:T	rs1322549	G	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr6	76707608	76707609	chr6:76707609:A:C	rs542011879	A	C	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr6	77787326	77787327	chr6:77787327:T:C	rs1586108	T	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	77894394	77894395	chr6:77894395:A:T	rs9443485	A	T	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	78154111	78154112	chr6:78154112:A:G	rs10943520	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr6	79545421	79545422	chr6:79545422:T:C	rs9448742	T	C	T	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	79763175	79763176	chr6:79763176:A:G	rs16891034	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr6	79964552	79964553	chr6:79964553:T:G	rs6918121	T	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr6	80182271	80182272	chr6:80182272:A:G	rs3805922	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.482895170559611	0.5754299336356052	CAAATTCAAAGGCAATTG
chr6	81241249	81241250	chr6:81241250:T:G	rs72901307	T	G	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr6	81241282	81241283	chr6:81241283:G:A	rs10943784	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr6	81241287	81241288	chr6:81241288:A:G	rs75563712	A	G	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	81331475	81331476	chr6:81331476:G:A	rs35070876	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr6	81397171	81397172	chr6:81397172:A:T	rs11759966	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	9.764092476118112	5.437332124768555	CCTATTATTTAATAATTA
chr6	81397184	81397185	chr6:81397185:A:C	rs12215776	A	C	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr6	81821631	81821632	chr6:81821632:G:A	rs564758740	G	A	g	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	82084686	82084687	chr6:82084687:G:A	rs77854008	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr6	82526507	82526508	chr6:82526508:T:A	rs72906273	T	A	T	Msx3.mouse_homeodomain_1	1	1	-	9.207166725450014	11.059613231509795	CAACTTAAAAACCAATTT
chr6	83192436	83192437	chr6:83192437:C:A	rs73749740	C	A	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr6	84094329	84094330	chr6:84094330:T:A	rs9449783	T	A	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr6	84094330	84094331	chr6:84094331:A:G	rs73750506	A	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr6	84645436	84645437	chr6:84645437:T:A	rs6932882	T	A	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr6	84650284	84650285	chr6:84650285:C:T	rs13196647	C	T	C	Msx3.mouse_homeodomain_1	7	1	-	9.500171814522247	10.609987351845842	ACAATGAGCAACTAATTA
chr6	84771124	84771125	chr6:84771125:A:G	rs78656156	A	G	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr6	85278710	85278711	chr6:85278711:A:G	rs4053778	A	G	g	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	85389624	85389625	chr6:85389625:A:T	rs16876114	A	T	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	85922217	85922218	chr6:85922218:C:A	rs7771342	C	A	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr6	86537461	86537462	chr6:86537462:G:T	rs1567265	G	T	T	Msx3.mouse_homeodomain_1	2	1	-	8.486072646360938	10.868660087831664	GCCATTTTAATCAAATTA
chr6	86537473	86537474	chr6:86537474:A:G	rs1567264	A	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	86949344	86949345	chr6:86949345:G:A	rs112737711	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	10.195918897279352	10.525859849995449	ACACTTACGTAGTAATTA
chr6	87029851	87029852	chr6:87029852:A:G	rs557125826	A	G	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr6	87154622	87154623	chr6:87154623:C:G	rs78334590	C	G	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	87205391	87205392	chr6:87205392:A:G	rs6913932	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	87968531	87968532	chr6:87968532:T:C	rs999590635	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	8.286077388179315	8.40378103670431	CTCATGAATAGGCAATTA
chr6	89074172	89074173	chr6:89074173:A:G	rs9344904	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr6	89082192	89082193	chr6:89082193:A:T	rs959635893	A	T	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr6	89082211	89082212	chr6:89082212:A:G	rs376349604	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	6.862185829660526	-0.04527940726347923	GCAATAGCACTGCAATCA
chr6	89241169	89241170	chr6:89241170:G:A	rs1321354	G	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr6	89837382	89837383	chr6:89837383:T:C	rs4333379	T	C	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	89837720	89837721	chr6:89837721:C:T	rs35741215	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	90238756	90238757	chr6:90238757:A:G	rs62408222	A	G	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr6	90485828	90485829	chr6:90485829:C:G	rs10455515	C	G	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	90652332	90652333	chr6:90652333:T:C	rs1018515	T	C	C	Msx3.mouse_homeodomain_1	10	1	-	9.454603284447249	8.378012113510774	ACACTTGGAAAGTAATTA
chr6	91034723	91034724	chr6:91034724:G:A	rs62417785	G	A	G	Msx3.mouse_homeodomain_1	7	1	+	8.137759163543127	9.247574700866721	CTATTTGGAATCCAATTA
chr6	91172616	91172617	chr6:91172617:A:G	rs6942007	A	G	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	91197334	91197335	chr6:91197335:T:C	rs4235842	T	C	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	91221356	91221357	chr6:91221357:C:T	rs9345115	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	7.422571625503674	6.574728754622989	GCGATTAGAATGTCATTG
chr6	91353051	91353052	chr6:91353052:A:T	rs370320177	A	T	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr6	91667399	91667400	chr6:91667400:C:T	rs1160726	C	T	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr6	91678707	91678708	chr6:91678708:G:A	rs4707685	G	A	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr6	91783508	91783509	chr6:91783509:A:C	rs1979796	A	C	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	91806029	91806030	chr6:91806030:C:T	rs2454258	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr6	92114322	92114323	chr6:92114323:T:A	rs10944563	T	A	T	Msx3.mouse_homeodomain_1	2	1	-	8.143826920278443	4.988399302065821	TCAATTAAGTGCATATTA
chr6	93163873	93163874	chr6:93163874:A:G	rs597073	A	G	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr6	93391818	93391819	chr6:93391819:G:C	rs574650	G	C	C	Msx3.mouse_homeodomain_1	0	1	+	7.480962288402718	7.113610778528105	GAATTTACCTTCCAATTA
chr6	93412717	93412718	chr6:93412718:G:A	rs479191	G	A	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr6	93414438	93414439	chr6:93414439:G:T	rs351329	G	T	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	93604743	93604744	chr6:93604744:T:G	rs9351361	T	G	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr6	93919663	93919664	chr6:93919664:C:T	rs62414885	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr6	95326142	95326143	chr6:95326143:A:G	rs966656371	A	G	A	Msx3.mouse_homeodomain_1	17	1	-	9.665898787123437	8.449828401875726	GTGATTAAATATCAATTT
chr6	95575815	95575816	chr6:95575816:T:A	rs13205922	T	A	T	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr6	95791794	95791795	chr6:95791795:G:A	rs1857482	G	A	g	Msx3.mouse_homeodomain_1	0	1	+	9.228086229493197	8.119576674328453	GTAATAATCATTTAATTA
chr6	96609309	96609310	chr6:96609310:C:T	rs575435614	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	96965759	96965760	chr6:96965760:G:A	rs11153286	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr6	97223046	97223047	chr6:97223047:G:A	rs7744255	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	97318053	97318054	chr6:97318054:C:G	rs10499011	C	G	C	Msx3.mouse_homeodomain_1	0	1	+	7.875911035037791	8.243262544912401	CCTTTTAAGTTGCAATTA
chr6	98537738	98537739	chr6:98537739:C:G	rs211191	C	G	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr6	99149228	99149229	chr6:99149229:C:T	rs1496967	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	99151144	99151145	chr6:99151145:A:G	rs56345510	A	G	G	Msx3.mouse_homeodomain_1	8	1	+	7.985822815278004	6.979273482432797	CTAATCAAAAACCACTTT
chr6	99223749	99223750	chr6:99223750:G:C	rs2047357	G	C	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	100173346	100173347	chr6:100173347:C:T	rs6904349	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr6	101177306	101177307	chr6:101177307:T:C	chr6:101177307:T:C	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr6	101177312	101177313	chr6:101177313:A:G	chr6:101177313:A:G	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr6	101296573	101296574	chr6:101296574:C:T	rs600842	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	101381289	101381290	chr6:101381290:C:T	rs2852497	C	T	C	Msx3.mouse_homeodomain_1	12	1	-	8.049994842727195	9.038069101574528	GCAATCAAGGTGGGATTA
chr6	101592937	101592938	chr6:101592938:T:A	rs634166	T	A	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr6	102355637	102355638	chr6:102355638:G:A	rs9499055	G	A	a	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr6	102402639	102402640	chr6:102402640:C:T	rs12664397	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr6	102670861	102670862	chr6:102670862:A:G	rs73511802	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr6	103870607	103870608	chr6:103870608:C:T	rs35155928	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	10.429641651292595	9.321132096127851	GCAATAACAAACCAATAA
chr6	104402908	104402909	chr6:104402909:A:G	rs9499855	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr6	104633216	104633217	chr6:104633217:C:T	rs76672836	C	T	c	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr6	105077763	105077764	chr6:105077764:A:G	rs113798189	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr6	105871685	105871686	chr6:105871686:C:T	rs12525732	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.701131669493256	7.853288798612569	GCAATTAAACTGAGATTT
chr6	106253558	106253559	chr6:106253559:G:T	rs2787531	G	T	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr6	106511068	106511069	chr6:106511069:G:A	rs77417245	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr6	107083295	107083296	chr6:107083296:A:G	rs7749044	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr6	107154307	107154308	chr6:107154308:C:T	rs41292442	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr6	107571839	107571840	chr6:107571840:A:G	rs4513841	A	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	107714493	107714494	chr6:107714494:C:T	rs3851214	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr6	107714508	107714509	chr6:107714509:T:C	rs1739861	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	10.824889972137619	4.726344292268486	ACAATTGTAATGAAATTA
chr6	108558950	108558951	chr6:108558951:C:T	rs74447671	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr6	108558974	108558975	chr6:108558975:T:G	chr6:108558975:T:G	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	9.646873627035415	2.7394083901114112	CAAATTAGATTAAAATTA
chr6	108651957	108651958	chr6:108651958:A:G	rs1445008420	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	108677897	108677898	chr6:108677898:G:A	rs1935951	G	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr6	108710674	108710675	chr6:108710675:A:G	rs563388	A	G	a	Msx3.mouse_homeodomain_1	13	1	+	12.467943427880156	10.410669248973958	CCAATTAATAAACAATTT
chr6	108710687	108710688	chr6:108710688:A:G	rs187748809	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	108710695	108710696	chr6:108710696:T:C	rs9486922	T	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr6	108971612	108971613	chr6:108971613:C:A	rs4992383	C	A	A	Msx3.mouse_homeodomain_1	5	1	-	9.039854898519923	13.482436675987088	CCAATGAAAATCCTATTA
chr6	108971622	108971623	chr6:108971623:T:A	rs4992382	T	A	A	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	110183700	110183701	chr6:110183701:C:T	rs78485788	C	T	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	110183705	110183706	chr6:110183706:G:A	rs75289569	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	110325403	110325404	chr6:110325404:T:G	chr6:110325404:T:G	T	G	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr6	110325427	110325428	chr6:110325428:C:T	rs973358393	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	110484621	110484622	chr6:110484622:C:A	rs9386904	C	A	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr6	110563848	110563849	chr6:110563849:G:C	rs75393011	G	C	G	Msx3.mouse_homeodomain_1	7	1	+	5.699230351842111	5.419159342460949	GCACTTGGGGGCCAATTT
chr6	110681754	110681755	chr6:110681755:A:G	rs79137173	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	110848027	110848028	chr6:110848028:T:C	rs12195139	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	110883163	110883164	chr6:110883164:C:G	rs1279593	C	G	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	110959429	110959430	chr6:110959430:A:T	rs4945868	A	T	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr6	111239861	111239862	chr6:111239862:T:C	rs78243804	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	111597590	111597591	chr6:111597591:C:A	rs174392	C	A	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	111683037	111683038	chr6:111683038:A:T	rs80172060	A	T	A	Msx3.mouse_homeodomain_1	9	1	+	7.039636938253577	6.625495666380494	ACACTCATCAACCAATCA
chr6	111784620	111784621	chr6:111784621:T:C	rs75808032	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr6	111793045	111793046	chr6:111793046:A:G	rs4427030	A	G	A	Msx3.mouse_homeodomain_1	11	1	+	10.416151439293646	11.613102464469055	TCAATTAAAAAAAAATCA
chr6	112044830	112044831	chr6:112044831:C:G	rs115969438	C	G	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr6	112199350	112199351	chr6:112199351:T:C	rs2237241	T	C	C	Msx3.mouse_homeodomain_1	5	1	+	9.510680143852799	7.117694401342299	GCCATTGAACACCCATTA
chr6	112246316	112246317	chr6:112246317:A:G	rs6921858	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	7.468894371499004	0.5614291345749989	GCCATTAAAACCAGATTG
chr6	112321123	112321124	chr6:112321124:T:C	rs6941093	T	C	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	112591183	112591184	chr6:112591184:T:C	rs2048470	T	C	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	112780051	112780052	chr6:112780052:C:T	rs74735190	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr6	112840192	112840193	chr6:112840193:G:A	rs149861593	G	A	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr6	112858422	112858423	chr6:112858423:A:G	rs6568742	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	7.648505078464656	8.496347949345342	GTACTCAGAAAGCACTTA
chr6	112910276	112910277	chr6:112910277:T:C	rs4082366	T	C	G	Msx3.mouse_homeodomain_1	6	1	-	8.601448263690198	6.15937103675864	ATAATAAAGATGCACTTA
chr6	113137967	113137968	chr6:113137968:G:A	rs2473975	G	A	G	Msx3.mouse_homeodomain_1	17	1	+	7.933685379359452	10.501844976542653	ACCATTTAAGACCAATTG
chr6	113140925	113140926	chr6:113140926:T:A	rs6937893	T	A	T	Msx3.mouse_homeodomain_1	3	1	-	7.621218801506264	2.4938684613581734	TCAATGCAAGAGCAATTA
chr6	113572326	113572327	chr6:113572327:C:G	rs12199249	C	G	C	Msx3.mouse_homeodomain_1	7	1	+	8.891418600532774	9.171489609913937	CTAATAACATAAAAATTA
chr6	113654302	113654303	chr6:113654303:A:C	rs78958594	A	C	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr6	113909689	113909690	chr6:113909690:T:C	rs552557	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr6	114096762	114096763	chr6:114096763:T:A	chr6:114096763:T:A	T	A	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr6	114096762	114096763	chr6:114096763:T:G	rs2056301	T	G	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr6	114304095	114304096	chr6:114304096:G:A	rs116554598	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	114569956	114569957	chr6:114569957:G:A	rs17076235	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr6	114895710	114895711	chr6:114895711:C:T	rs9400768	C	T	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr6	115277210	115277211	chr6:115277211:T:C	rs9488593	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	8.580593199277963	8.698296847802961	GCTATTATTTATCAATTG
chr6	115759262	115759263	chr6:115759263:T:C	rs1556614	T	C	T	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr6	115773865	115773866	chr6:115773866:G:A	rs7751236	G	A	G	Msx3.mouse_homeodomain_1	1	1	+	7.319289664233023	7.883349144320873	CGAATCACATTCCCATTA
chr6	115891386	115891387	chr6:115891387:C:T	rs17077343	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr6	116205411	116205412	chr6:116205412:C:T	rs1211388	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	9.255183521951704	8.058232496776291	AAAATTATCTCGTAATTA
chr6	116328319	116328320	chr6:116328320:A:G	rs10782184	A	G	A	Msx3.mouse_homeodomain_1	13	1	+	10.22401444496947	8.166740266063275	GGAATTTAAAACTAATTA
chr6	117189039	117189040	chr6:117189040:G:T	rs6901720	G	T	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr6	117207487	117207488	chr6:117207488:G:A	rs9374640	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr6	117441086	117441087	chr6:117441087:T:C	rs71570854	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr6	117477345	117477346	chr6:117477346:T:C	rs2354346	T	C	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr6	117556060	117556061	chr6:117556061:A:G	rs115376179	A	G	A	Msx3.mouse_homeodomain_1	12	1	+	9.261330902749346	8.273256643902013	CTAATAAAAGTAAAATTA
chr6	118278031	118278032	chr6:118278032:A:T	rs530109264	A	T	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	118371140	118371141	chr6:118371141:C:T	rs7764093	C	T	T	Msx3.mouse_homeodomain_1	2	1	+	7.23360103152938	6.4607608547874875	GCCATTAATGACCACTTT
chr6	118679329	118679330	chr6:118679330:A:G	rs72960977	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.477152190040051	5.507721213671173	ACAATAAATATGTGATTA
chr6	118889222	118889223	chr6:118889223:T:C	rs1446137736	T	C	T	Msx3.mouse_homeodomain_1	13	1	+	12.52459645493158	13.82281186129417	CCAATTAATTACCTATTA
chr6	118896608	118896609	chr6:118896609:C:T	rs114584558	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr6	119478603	119478604	chr6:119478604:C:G	rs6923308	C	G	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	119521397	119521398	chr6:119521398:T:C	rs7740612	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr6	119844308	119844309	chr6:119844309:A:G	rs1330105	A	G	a	Msx3.mouse_homeodomain_1	14	1	+	9.165459843737114	4.5773656247139645	GTCATTATTTTCCAATCA
chr6	119996215	119996216	chr6:119996216:A:C	rs17638707	A	C	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	121114923	121114924	chr6:121114924:A:G	rs13199297	A	G	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr6	121653287	121653288	chr6:121653288:G:A	rs146124131	G	A	G	Msx3.mouse_homeodomain_1	5	1	+	9.033485697841979	10.65466542815276	TTAATGAAATAGAAATTA
chr6	121754416	121754417	chr6:121754417:G:A	rs4245519	G	A	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr6	122007578	122007579	chr6:122007579:A:C	chr6:122007579:A:C	A	C	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr6	122350996	122350997	chr6:122350997:C:A	rs9482237	C	A	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr6	122370081	122370082	chr6:122370082:G:A	rs9401525	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr6	122390630	122390631	chr6:122390631:G:A	rs137862583	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	9.752511032223143	8.928920287962963	CCCATTAAATAACATTTA
chr6	122793617	122793618	chr6:122793618:A:C	rs142451851	A	C	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr6	123398719	123398720	chr6:123398720:C:T	rs73771947	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	8.464016660358581	7.640425916098402	CCTATTGAGATGAAATTA
chr6	123633362	123633363	chr6:123633363:A:T	rs76999161	A	T	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr6	123643668	123643669	chr6:123643669:T:A	rs7453668	T	A	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr6	123765084	123765085	chr6:123765085:G:C	rs141940013	G	C	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	124041102	124041103	chr6:124041103:A:T	rs117068923	A	T	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	124480164	124480165	chr6:124480165:A:G	rs776436732	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr6	124984704	124984705	chr6:124984705:A:C	rs6941072	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	8.830885467547635	3.7573526914383044	ACACTTAAAATTTGATTA
chr6	125261798	125261799	chr6:125261799:G:T	rs4895687	G	T	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	125314198	125314199	chr6:125314199:G:A	rs74779619	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr6	125596314	125596315	chr6:125596315:C:T	rs564988626	C	T	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr6	125781556	125781557	chr6:125781557:G:T	rs145035317	G	T	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr6	125931530	125931531	chr6:125931531:C:A	rs61284774	C	A	C	Msx3.mouse_homeodomain_1	1	1	-	8.035926071995018	10.452432058142648	GGAATTATGAAGCAATGA
chr6	126123220	126123221	chr6:126123221:G:T	rs7754507	G	T	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	126475964	126475965	chr6:126475965:A:G	rs9401883	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.350149125955801	3.3807181495869245	GCTATTGAAGGCCACTTA
chr6	126715896	126715897	chr6:126715897:C:T	rs10484759	C	T	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	126784346	126784347	chr6:126784347:A:G	rs9401908	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	126784383	126784384	chr6:126784384:G:A	rs9398816	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr6	127421113	127421114	chr6:127421114:A:T	rs73771687	A	T	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr6	127494718	127494719	chr6:127494719:G:A	rs9388581	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr6	127761811	127761812	chr6:127761812:C:G	rs9385439	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	7.229161940877511	3.964813083849198	CCAATAGCACAGCCATTA
chr6	128533005	128533006	chr6:128533006:A:G	rs1361595	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	7.725037078617354	3.136942859594204	CTACTTAGCATCCTATTA
chr6	128533009	128533010	chr6:128533010:T:C	rs78839285	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr6	129030338	129030339	chr6:129030339:A:G	rs4076090	A	G	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	129500981	129500982	chr6:129500982:C:G	rs73776194	C	G	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr6	129637951	129637952	chr6:129637952:C:T	rs9402155	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	10.541092793849018	9.095970130282538	GTAATTCAGCTGCAATTA
chr6	129639160	129639161	chr6:129639161:G:A	rs13217571	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	129639222	129639223	chr6:129639223:A:G	rs13217271	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	129855051	129855052	chr6:129855052:A:G	rs17475770	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	130306552	130306553	chr6:130306553:C:T	rs62433913	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr6	130425701	130425702	chr6:130425702:A:G	rs117609287	A	G	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr6	130437977	130437978	chr6:130437978:C:G	rs10456986	C	G	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr6	130514116	130514117	chr6:130514117:C:T	rs150708843	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	130514130	130514131	chr6:130514131:C:G	rs1051116820	C	G	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr6	130997322	130997323	chr6:130997323:G:A	rs79452953	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	131060346	131060347	chr6:131060347:A:C	chr6:131060347:A:C	A	C	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	131102092	131102093	chr6:131102093:C:T	rs6921299	C	T	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	131130141	131130142	chr6:131130142:G:T	rs611823	G	T	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr6	131498267	131498268	chr6:131498268:C:T	rs78997368	C	T	c	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr6	131556520	131556521	chr6:131556521:T:C	rs2608977	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.575880154371976	4.987785935348825	AAAATAAATAAACAATTA
chr6	131748045	131748046	chr6:131748046:T:C	rs3844000	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	9.069772939510958	6.676787197000457	ACACTTATAAAACAATCA
chr6	131861443	131861444	chr6:131861444:A:G	rs9493114	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	131988997	131988998	chr6:131988998:C:T	rs233914	C	T	T	Msx3.mouse_homeodomain_1	14	1	+	7.29634377917841	6.530562466083043	TTAATTAGATCCCACTTG
chr6	132116335	132116336	chr6:132116336:C:T	rs1569448	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr6	132220268	132220269	chr6:132220269:A:G	rs7739499	A	G	G	Msx3.mouse_homeodomain_1	7	1	+	8.38304428114883	7.273228743825235	ACACTTAACTTCCATTTA
chr6	132235860	132235861	chr6:132235861:T:G	rs1998073	T	G	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr6	132236270	132236271	chr6:132236271:T:C	rs6913628	T	C	T	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr6	132415197	132415198	chr6:132415198:A:G	rs17061243	A	G	A	Msx3.mouse_homeodomain_1	2	1	-	8.79965816906156	9.572498345803458	GATATTAAATAGCAATTT
chr6	132607944	132607945	chr6:132607945:T:C	rs12200430	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	132608044	132608045	chr6:132608045:T:C	rs75339567	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	11.20199296624413	5.1034472863749984	ACAATTAACAAATAATTG
chr6	132742544	132742545	chr6:132742545:C:T	rs34923036	C	T	T	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	132918866	132918867	chr6:132918867:T:C	rs7740428	T	C	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr6	132918879	132918880	chr6:132918880:T:A	rs17061975	T	A	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr6	132918884	132918885	chr6:132918885:G:A	rs7758787	G	A	g	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr6	132973655	132973656	chr6:132973656:C:T	rs885488	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr6	133160051	133160052	chr6:133160052:G:A	rs531156	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	133741736	133741737	chr6:133741737:C:T	rs146825887	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	133741745	133741746	chr6:133741746:G:A	rs68054668	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr6	133813416	133813417	chr6:133813417:G:A	rs1209414	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr6	133961991	133961992	chr6:133961992:T:G	rs539447957	T	G	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr6	134088660	134088661	chr6:134088661:G:A	rs4507607	G	A	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	134223669	134223670	chr6:134223670:T:C	rs12196971	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr6	134465323	134465324	chr6:134465324:T:A	rs7743107	T	A	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr6	134520004	134520005	chr6:134520005:G:A	rs9321463	G	A	A	Msx3.mouse_homeodomain_1	0	1	-	8.985588908268841	8.161998164008661	CCACTTGAAAAACAATTG
chr6	134540625	134540626	chr6:134540626:C:G	rs1884969	C	G	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr6	135096901	135096902	chr6:135096902:A:C	rs55665958	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	7.101379246453713	0.19391400952970805	CCCAGTAAACATCAATTA
chr6	135147752	135147753	chr6:135147753:A:C	rs9494155	A	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr6	135254605	135254606	chr6:135254606:G:C	rs9494188	G	C	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr6	135935918	135935919	chr6:135935919:G:A	rs6934436	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr6	136427612	136427613	chr6:136427613:C:A	rs3778302	C	A	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr6	137106253	137106254	chr6:137106254:T:C	rs6932995	T	C	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	137169408	137169409	chr6:137169409:C:A	rs13193435	C	A	C	Msx3.mouse_homeodomain_1	11	1	+	8.965556792250435	7.683140226364762	TCAATTACTAACCGATAA
chr6	137333255	137333256	chr6:137333256:A:G	rs72981489	A	G	A	Msx3.mouse_homeodomain_1	17	1	-	7.548847143103236	6.332776757855525	CCAATTACAGTGTCATTT
chr6	137333277	137333278	chr6:137333278:T:G	chr6:137333278:T:G	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	137424739	137424740	chr6:137424740:A:G	rs12212451	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	8.45457707313242	2.3560313932632857	CTAATTTACATACAATTG
chr6	137473797	137473798	chr6:137473798:C:T	rs118174818	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr6	138021574	138021575	chr6:138021575:C:A	rs4291109	C	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	138032653	138032654	chr6:138032654:G:A	rs79297412	G	A	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	138544810	138544811	chr6:138544811:T:C	rs9399244	T	C	C	Msx3.mouse_homeodomain_1	3	1	-	10.74109989875225	6.771668922383371	CTTATTACAATGTAATTA
chr6	138589175	138589176	chr6:138589176:T:C	rs182561422	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	10.11766834998691	3.210203113062907	GCAATCAAGTATCCATTA
chr6	138646249	138646250	chr6:138646250:A:G	rs12197358	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.001216272352742	5.031785295983866	GGAATTACAAGAAAATTA
chr6	138655205	138655206	chr6:138655206:C:T	rs9321668	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr6	138655231	138655232	chr6:138655232:A:G	rs79122911	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.50700546917341	4.918911250150262	TTCATAAAAATACAATTA
chr6	138655825	138655826	chr6:138655826:T:C	rs74444856	T	C	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	138801203	138801204	chr6:138801204:A:G	rs9321674	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr6	138834717	138834718	chr6:138834718:A:G	rs1529152	A	G	G	Msx3.mouse_homeodomain_1	13	1	+	9.38472344981422	7.327449270908024	GTAATTCATTAGAAATTA
chr6	139155209	139155210	chr6:139155210:C:T	rs9403046	C	T	T	Msx3.mouse_homeodomain_1	0	1	-	8.158736184409232	7.050226629244491	GCCATTGTGTTCCAATTG
chr6	139187749	139187750	chr6:139187750:C:A	rs143674293	C	A	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr6	139375783	139375784	chr6:139375784:G:T	rs189325816	G	T	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr6	139651383	139651384	chr6:139651384:C:T	rs17069161	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr6	139682910	139682911	chr6:139682911:C:T	rs2327978	C	T	t	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	139763968	139763969	chr6:139763969:A:T	rs9403116	A	T	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr6	140248050	140248051	chr6:140248051:G:A	rs9389772	G	A	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr6	140779650	140779651	chr6:140779651:C:A	rs6570417	C	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr6	141401820	141401821	chr6:141401821:G:A	rs9484507	G	A	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr6	142561817	142561818	chr6:142561818:A:G	rs263114	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	7.397872990702392	6.457328998316247	ACCATTTACAACCAATCA
chr6	142666829	142666830	chr6:142666830:T:G	chr6:142666830:T:G	T	G	T	Msx3.mouse_homeodomain_1	4	1	+	7.988237092081939	2.330247840132242	TTAATAAGGAACCACTTA
chr6	142907797	142907798	chr6:142907798:A:T	rs4896605	A	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr6	142942698	142942699	chr6:142942699:G:T	rs62428835	G	T	G	Msx3.mouse_homeodomain_1	14	1	+	7.890661048426439	8.151994916100033	CCAGTTAAAAATCAGTTA
chr6	142949078	142949079	chr6:142949079:A:G	rs2095369	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	8.113751081826807	8.231454730351803	CCAATCAATAGGCCATTG
chr6	143575826	143575827	chr6:143575827:G:A	rs9496681	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr6	143654019	143654020	chr6:143654020:A:G	rs11155315	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr6	144269156	144269157	chr6:144269157:A:G	rs7746497	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	9.515092024472963	9.632795672997961	CCAATTATTTCTCCATTA
chr6	144543810	144543811	chr6:144543811:A:T	rs9321978	A	T	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr6	144585696	144585697	chr6:144585697:A:G	rs9399481	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr6	144627591	144627592	chr6:144627592:C:A	rs12210995	C	A	C	Msx3.mouse_homeodomain_1	1	1	+	8.352154131983868	5.651864755043402	CCCATTAAACAGTAATTC
chr6	144898064	144898065	chr6:144898065:A:G	rs114476313	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	145022559	145022560	chr6:145022560:C:T	rs75845244	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	9.517734757813734	7.807504338830024	TCACTCAGAGTCCAATTA
chr6	145253390	145253391	chr6:145253391:C:T	rs10747272	C	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr6	145280423	145280424	chr6:145280424:T:C	rs1321529	T	C	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr6	145531272	145531273	chr6:145531273:T:C	rs412350	T	C	t	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	145532525	145532526	chr6:145532526:G:C	rs441364	G	C	C	Msx3.mouse_homeodomain_1	7	1	-	7.912656100529488	8.192727109910653	ACCATTACAAGGTAATCA
chr6	145534485	145534486	chr6:145534486:T:C	rs386344	T	C	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr6	145553251	145553252	chr6:145553252:A:G	rs406343	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	9.41009599557946	6.9680187686479025	ATAATCATCAGTCAATTA
chr6	146364404	146364405	chr6:146364405:C:T	rs183964631	C	T	C	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr6	146364423	146364424	chr6:146364424:T:C	rs73579029	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.579387420379192	4.609956444010315	CCAATCAGGTAGTAATCA
chr6	146887452	146887453	chr6:146887453:C:A	rs12211724	C	A	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr6	146888089	146888090	chr6:146888090:T:G	rs9390437	T	G	G	Msx3.mouse_homeodomain_1	7	1	-	8.711295595343909	7.321409048639151	GAGATTTACAAGCAATTA
chr6	147535234	147535235	chr6:147535235:G:C	rs9399607	G	C	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr6	147711711	147711712	chr6:147711712:T:C	rs3861410	T	C	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr6	147922830	147922831	chr6:147922831:T:G	rs578202	T	G	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	147947436	147947437	chr6:147947437:A:T	rs11966598	A	T	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr6	147974891	147974892	chr6:147974892:G:A	rs17589656	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr6	147984595	147984596	chr6:147984596:T:C	rs80122502	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr6	148225928	148225929	chr6:148225929:G:A	rs12195413	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr6	148251514	148251515	chr6:148251515:A:C	rs376700013	A	C	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr6	148251529	148251530	chr6:148251530:A:G	rs141128641	A	G	A	Msx3.mouse_homeodomain_1	5	1	-	8.058254909693263	5.66526916718276	GTCATTATGCTCCAATTT
chr6	148251534	148251535	chr6:148251535:C:T	rs180755034	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	8.058254909693263	6.949745354528519	GTCATTATGCTCCAATTT
chr6	148323594	148323595	chr6:148323595:T:A	rs6940190	T	A	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr6	148329704	148329705	chr6:148329705:G:A	rs190098488	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr6	148487275	148487276	chr6:148487276:G:A	rs3817930	G	A	A	Msx3.mouse_homeodomain_1	0	1	-	8.568825672333462	7.745234928073285	CTGATTATAAAGAAATTG
chr6	148700219	148700220	chr6:148700220:A:G	rs6913385	A	G	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr6	148714361	148714362	chr6:148714362:T:G	rs12528817	T	G	T	Msx3.mouse_homeodomain_1	2	1	-	7.119142028599673	4.736554587128949	ACAATAGCAAGCCAATTG
chr6	149034339	149034340	chr6:149034340:T:C	rs4335010	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr6	149170478	149170479	chr6:149170479:T:C	rs57204178	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr6	149239192	149239193	chr6:149239193:A:G	rs11966037	A	G	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr6	149316781	149316782	chr6:149316782:G:A	rs62426062	G	A	g	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr6	149897363	149897364	chr6:149897364:G:A	rs7756737	G	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	150091621	150091622	chr6:150091622:C:A	rs6933642	C	A	.	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr6	150212578	150212579	chr6:150212579:C:T	rs11753049	C	T	T	Msx3.mouse_homeodomain_1	7	1	-	8.050120922673745	9.15993645999734	GAAATGAGAGAACAATTA
chr6	150510609	150510610	chr6:150510610:G:C	rs4323319	G	C	G	Msx3.mouse_homeodomain_1	3	1	-	8.603864934293007	7.514608322457028	GTCCTTATACACTAATTA
chr6	150619559	150619560	chr6:150619560:T:G	rs62434064	T	G	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	150698883	150698884	chr6:150698884:A:T	rs12202497	A	T	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	150978919	150978920	chr6:150978920:T:G	rs569110	T	G	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	151413759	151413760	chr6:151413760:C:T	rs9479035	C	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	151473568	151473569	chr6:151473569:T:C	rs6937816	T	C	C	Msx3.mouse_homeodomain_1	6	1	-	12.267371297577029	9.825294070645473	GCAGTTAAGAAACAATTA
chr6	151553408	151553409	chr6:151553409:A:G	rs78258746	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr6	151676410	151676411	chr6:151676411:A:G	rs1293944	A	G	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr6	152302337	152302338	chr6:152302338:T:A	rs149141962	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	8.213155815568076	4.620873608455554	GCGATTAGAAACCACTCA
chr6	152576278	152576279	chr6:152576279:C:G	rs7749912	C	G	G	Msx3.mouse_homeodomain_1	7	1	+	7.345445232789872	7.625516242171035	GGAATTACTAGGCATTTA
chr6	153209246	153209247	chr6:153209247:G:C	rs317074	G	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr6	153625181	153625182	chr6:153625182:T:C	rs73579137	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr6	153741900	153741901	chr6:153741901:G:T	rs6557307	G	T	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr6	153799255	153799256	chr6:153799256:A:T	rs12055515	A	T	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr6	154229718	154229719	chr6:154229719:G:A	rs9397697	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr6	154304227	154304228	chr6:154304228:A:T	rs35856845	A	T	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr6	154466574	154466575	chr6:154466575:A:G	rs9478550	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	154512920	154512921	chr6:154512921:T:C	rs62432735	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr6	154602580	154602581	chr6:154602581:A:G	rs9478559	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr6	154602615	154602616	chr6:154602616:A:C	rs9479894	A	C	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr6	155107950	155107951	chr6:155107951:G:A	rs9397779	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	7.596506575642727	5.886276156659018	CCAATTTTCTGCGAATTA
chr6	155216477	155216478	chr6:155216478:G:A	rs73006759	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	8.323541099840437	6.613310680856729	TCAATTAGGAACCATTTG
chr6	155216489	155216490	chr6:155216490:T:C	rs78107229	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr6	155341383	155341384	chr6:155341384:C:T	rs73010623	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr6	155524362	155524363	chr6:155524363:A:G	rs6557432	A	G	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	155524401	155524402	chr6:155524402:C:T	rs6557433	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr6	155524402	155524403	chr6:155524403:T:C	rs6557434	T	C	t	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr6	155939485	155939486	chr6:155939486:T:C	rs551032959	T	C	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr6	156028235	156028236	chr6:156028236:C:T	rs9397892	C	T	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr6	156934458	156934459	chr6:156934459:A:G	rs182903076	A	G	A	Msx3.mouse_homeodomain_1	12	1	-	10.04103772042275	11.486160383989233	ACAATAAACTTATAATTA
chr6	157089233	157089234	chr6:157089234:A:G	rs77476846	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr6	157536582	157536583	chr6:157536583:C:A	rs9457716	C	A	C	Msx3.mouse_homeodomain_1	9	1	-	8.459456171445012	8.985858891958078	TTCATTATTGGGTAATTA
chr6	157709614	157709615	chr6:157709615:C:T	rs4618554	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	9.574407622219955	8.377456597044546	CCTATAAAAAGGTAATTA
chr6	157715262	157715263	chr6:157715263:T:A	rs138669767	T	A	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr6	157807279	157807280	chr6:157807280:C:T	rs6905094	C	T	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr6	157839632	157839633	chr6:157839633:G:A	rs7743251	G	A	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr6	157893561	157893562	chr6:157893562:T:C	rs2746216	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	11.112952339503902	11.960795210384589	GTAATTTTCTTGCAATTA
chr6	157893575	157893576	chr6:157893576:T:A	rs3805774	T	A	A	Msx3.mouse_homeodomain_1	15	1	+	11.112952339503902	5.034038920146045	GTAATTTTCTTGCAATTA
chr6	158073535	158073536	chr6:158073536:G:A	rs9459298	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr6	158168622	158168623	chr6:158168623:C:G	rs62437115	C	G	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	158257471	158257472	chr6:158257472:A:G	rs6920121	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.227773510026505	5.258342533657627	GCCATTAAACAACATTTA
chr6	158412948	158412949	chr6:158412949:A:G	rs341158	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr6	158525461	158525462	chr6:158525462:T:C	rs9456315	T	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr6	158525465	158525466	chr6:158525466:A:G	rs75152726	A	G	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr6	159012240	159012241	chr6:159012241:A:G	rs117599227	A	G	a	Msx3.mouse_homeodomain_1	10	1	+	8.490772815167716	7.414181644231241	GCAATTAAAGATGAATAA
chr6	159151816	159151817	chr6:159151817:T:C	rs1337302	T	C	C	Msx3.mouse_homeodomain_1	9	1	-	9.7306475337878	8.790103541401653	CCGATTGGAAGACAATTA
chr6	159220673	159220674	chr6:159220674:G:A	rs12194933	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	159827057	159827058	chr6:159827058:G:A	rs4709380	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr6	159829648	159829649	chr6:159829649:T:C	rs58770277	T	C	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr6	160964637	160964638	chr6:160964638:C:T	rs682216	C	T	c	Msx3.mouse_homeodomain_1	0	1	-	7.577441782293481	6.468932227128735	GTCATTATAATGCAAATA
chr6	161038632	161038633	chr6:161038633:A:G	rs6455701	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr6	161058968	161058969	chr6:161058969:A:G	rs76304068	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	9.164413049503214	8.272324017431963	ACAATTCCATTTCAATTA
chr6	161266757	161266758	chr6:161266758:T:C	rs3798949	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	6.236855736323412	2.2674247599545354	GCCATCAGCAGACAATCA
chr6	161369594	161369595	chr6:161369595:A:T	rs986609404	A	T	A	Msx3.mouse_homeodomain_1	5	1	-	9.93166274455757	7.11026069740119	GCAATTACCTAACAGTTA
chr6	161753748	161753749	chr6:161753749:T:G	rs74596546	T	G	T	Msx3.mouse_homeodomain_1	14	1	-	7.345115802052885	3.784136763798696	GCACTTGTGTTCCCATTA
chr6	161792993	161792994	chr6:161792994:G:A	rs2186809	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr6	161792994	161792995	chr6:161792995:A:C	rs3019429	A	C	A	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr6	161945221	161945222	chr6:161945222:A:G	rs1790021	A	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr6	162416883	162416884	chr6:162416884:G:T	rs6910346	G	T	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr6	162821799	162821800	chr6:162821800:C:A	rs9458649	C	A	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr6	163159796	163159797	chr6:163159797:C:T	rs2764009	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr6	163330919	163330920	chr6:163330920:C:T	rs116238359	C	T	T	Msx3.mouse_homeodomain_1	3	1	+	6.912605058076841	4.66542908246165	TCACTTAGCTCCCACTTA
chr6	163611465	163611466	chr6:163611466:G:A	rs12525739	G	A	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr6	163657656	163657657	chr6:163657657:T:C	rs10455926	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr6	163894939	163894940	chr6:163894940:G:A	rs62438060	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr6	163904893	163904894	chr6:163904894:G:A	rs2281407	G	A	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr6	163941093	163941094	chr6:163941094:C:T	rs6919881	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr6	163952621	163952622	chr6:163952622:T:C	rs2078446	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr6	163963186	163963187	chr6:163963187:G:A	rs9456909	G	A	A	Msx3.mouse_homeodomain_1	10	1	-	10.801802781293958	11.845775081167673	CCAATTAATACAGAATTA
chr6	163963203	163963204	chr6:163963204:G:A	rs113813775	G	A	g	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr6	164076210	164076211	chr6:164076211:G:T	rs77961487	G	T	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr6	164105246	164105247	chr6:164105247:T:G	rs78758000	T	G	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr6	164209108	164209109	chr6:164209109:C:T	rs1548307	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	8.15063118311837	6.9536801579429595	GTGATTGTTGAGTAATTA
chr6	164722386	164722387	chr6:164722387:A:C	rs4709886	A	C	C	Msx3.mouse_homeodomain_1	7	1	-	10.164926622094544	10.115056678759611	CTAATCATCTGACAATTA
chr6	164898335	164898336	chr6:164898336:C:T	rs9356299	C	T	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr6	165129196	165129197	chr6:165129197:A:G	rs2758936	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr6	165129274	165129275	chr6:165129275:T:C	rs13208025	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr6	165378729	165378730	chr6:165378730:T:C	rs60201680	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr6	165532152	165532153	chr6:165532153:T:C	rs536093	T	C	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr6	165627132	165627133	chr6:165627133:A:T	rs4709082	A	T	T	Msx3.mouse_homeodomain_1	15	1	-	7.877345493096514	1.7984320737386574	TAAATAAAGCCGCAATTA
chr6	166159949	166159950	chr6:166159950:G:A	rs3127332	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr6	166276199	166276200	chr6:166276200:C:T	rs9356465	C	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr6	166476505	166476506	chr6:166476506:A:G	rs734560	A	G	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	166487798	166487799	chr6:166487799:T:G	rs145030018	T	G	T	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr6	166939512	166939513	chr6:166939513:G:A	rs778362852	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	166990698	166990699	chr6:166990699:A:C	rs932644	A	C	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr6	167046107	167046108	chr6:167046108:C:T	rs10946208	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr6	167227045	167227046	chr6:167227046:G:A	rs2094945	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr6	167413916	167413917	chr6:167413917:T:C	rs12193232	T	C	-	Msx3.mouse_homeodomain_1	5	1	+	7.925014532568967	5.532028790058466	AACATTAGAGGACAATTA
chr6	167465945	167465946	chr6:167465946:C:T	rs9406257	C	T	c	Msx3.mouse_homeodomain_1	12	1	+	7.447590846043142	6.002468182476659	TCAATTAGGCAACGATCA
chr6	168151923	168151924	chr6:168151924:G:A	rs12215001	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	168151926	168151927	chr6:168151927:T:G	rs6903752	T	G	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr6	168151930	168151931	chr6:168151931:A:C	rs12196035	A	C	T	Msx3.mouse_homeodomain_1	16	1	-	6.831074855748102	1.7575420796387724	CCAATTGAGCTCCAAATA
chr6	168188841	168188842	chr6:168188842:G:A	rs73272411	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr6	168364271	168364272	chr6:168364272:G:T	rs9355064	G	T	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr6	168915732	168915733	chr6:168915733:A:C	rs4235907	A	C	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr6	168935478	168935479	chr6:168935479:A:T	rs56215486	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	9.95327714593666	5.770868683096695	GCTATCAGGTTCCAATTA
chr6	168973432	168973433	chr6:168973433:T:C	rs34094599	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	10.701726871860416	6.113632652837266	TAAATTGAATGCCAATTA
chr6	169172391	169172392	chr6:169172392:A:G	rs117773632	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.444190688617728	1.3456450087485945	GCCATTAAGCTTCTATTA
chr6	169229687	169229688	chr6:169229688:G:A	rs6422747	G	A	A	Msx3.mouse_homeodomain_1	17	1	+	8.12339781187378	10.691557409056983	GCAGTTATCCTGCAATTG
chr6	169397803	169397804	chr6:169397804:A:G	rs111766828	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr6	169830456	169830457	chr6:169830457:C:G	rs1076743	C	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr6	169916172	169916173	chr6:169916173:C:T	rs1042416468	C	T	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr6	170100369	170100370	chr6:170100370:G:A	rs4710873	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr6	170212062	170212063	chr6:170212063:T:C	rs73790402	T	C	t	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr6	170407620	170407621	chr6:170407621:T:A	rs17860755	T	A	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr6	170407624	170407625	chr6:170407625:C:T	rs9460140	C	T	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr7	95519	95520	chr7:95520:A:G	rs28803846	A	G	N	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr7	162190	162191	chr7:162191:C:T	rs10258746	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.356112905220758	7.159161880045349	CTAATCACTACGAAATTA
chr7	162530	162531	chr7:162531:A:T	rs73671738	A	T	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr7	250089	250090	chr7:250090:T:A	rs145548418	T	A	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr7	315015	315016	chr7:315016:T:C	rs36185459	T	C	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	874340	874341	chr7:874341:T:C	chr7:874341:T:C	T	C	-	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr7	1237862	1237863	chr7:1237863:G:A	rs561883618	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr7	1238954	1238955	chr7:1238955:C:G	rs76810695	C	G	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr7	1804324	1804325	chr7:1804325:G:A	rs139856665	G	A	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr7	2832598	2832599	chr7:2832599:A:G	rs1182185	A	G	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr7	3083613	3083614	chr7:3083614:A:C	rs3763496	A	C	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr7	3094509	3094510	chr7:3094510:G:A	rs73050273	G	A	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr7	3138185	3138186	chr7:3138186:T:C	rs12700630	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr7	3233283	3233284	chr7:3233284:C:G	rs62439556	C	G	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr7	3436697	3436698	chr7:3436698:G:A	rs10235617	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	3471482	3471483	chr7:3471483:G:A	rs10232431	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr7	3559475	3559476	chr7:3559476:A:T	rs17133554	A	T	A	Msx3.mouse_homeodomain_1	15	1	-	8.481082286610592	2.4021688672527346	GCACTTAAAAAAAAATTT
chr7	3595134	3595135	chr7:3595135:T:G	rs16870900	T	G	g	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr7	3595751	3595752	chr7:3595752:C:T	rs149247020	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr7	3726989	3726990	chr7:3726990:T:C	rs10230508	T	C	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr7	3805130	3805131	chr7:3805131:C:T	rs12113979	C	T	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr7	4009566	4009567	chr7:4009567:A:G	rs927427642	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr7	4073660	4073661	chr7:4073661:A:G	rs10248212	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.235870630042758	3.647776411019609	CAAATTATTTAGCGATTG
chr7	4075600	4075601	chr7:4075601:T:A	rs55808604	T	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr7	4204505	4204506	chr7:4204506:C:T	rs28629320	C	T	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr7	4537373	4537374	chr7:4537374:T:G	rs76094389	T	G	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr7	5189224	5189225	chr7:5189225:T:A	rs4724449	T	A	A	Msx3.mouse_homeodomain_1	9	1	+	8.032453717930945	8.446594989804026	GCACTTGGCTAATAATTA
chr7	5230680	5230681	chr7:5230681:T:C	chr7:5230681:T:C	T	C	T	Msx3.mouse_homeodomain_1	0	1	+	9.784165374562878	10.607756118823055	TTCATTAGAAAGCAATCA
chr7	6890783	6890784	chr7:6890784:T:C	rs111828432	T	C	.	Msx3.mouse_homeodomain_1	11	1	-	7.910824837126998	9.107775862302406	GTAGTTAAGGAACAATTG
chr7	7666955	7666956	chr7:7666956:C:T	rs2108001	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	7793480	7793481	chr7:7793481:C:G	rs17137826	C	G	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	7800921	7800922	chr7:7800922:G:A	rs4720754	G	A	A	Msx3.mouse_homeodomain_1	9	1	+	7.668641820811437	8.609185813197584	TAAATTAGCGTCTGATTA
chr7	8147083	8147084	chr7:8147084:A:G	rs77808984	A	G	a	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr7	8250483	8250484	chr7:8250484:T:C	rs3779358	T	C	-	Msx3.mouse_homeodomain_1	6	1	-	8.32156434769374	5.879487120762184	CCCATTAAAAACTCATCA
chr7	8287430	8287431	chr7:8287431:A:G	rs7801871	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	9.8458915293403	5.257797310317148	GAAATTGACTTTCAATTA
chr7	8295800	8295801	chr7:8295801:A:G	rs117802970	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	14.331315403930407	8.232769724061274	CCAATCAAAGTCCAATTA
chr7	8304441	8304442	chr7:8304442:A:G	rs10952106	A	G	A	Msx3.mouse_homeodomain_1	5	1	+	8.26683594590974	6.645656215598956	ACAATAAAGTCCCAATTT
chr7	8354279	8354280	chr7:8354280:T:A	rs73063558	T	A	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr7	8571802	8571803	chr7:8571803:T:G	rs73678056	T	G	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr7	9796435	9796436	chr7:9796436:A:C	rs1306019745	A	C	A	Msx3.mouse_homeodomain_1	14	1	+	5.674828642592584	2.1138496043383945	GCCCTTAGAGAGCCATTG
chr7	11254413	11254414	chr7:11254414:A:G	rs10486113	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.909030591459616	3.320936372436466	GCACTAGTCATCCAATTA
chr7	11327318	11327319	chr7:11327319:C:T	rs72586158	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr7	11447472	11447473	chr7:11447473:C:G	rs2074434	C	G	C	Msx3.mouse_homeodomain_1	11	1	-	11.103458750949983	11.188924291660246	TAAATTATAGAGTAATTA
chr7	11540344	11540345	chr7:11540345:C:G	rs12699205	C	G	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr7	11544891	11544892	chr7:11544892:G:T	rs28478051	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr7	12108402	12108403	chr7:12108403:A:C	rs13222474	A	C	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr7	12133940	12133941	chr7:12133941:A:T	rs11972304	A	T	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr7	12133945	12133946	chr7:12133946:T:C	rs11982722	T	C	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr7	12178312	12178313	chr7:12178313:G:A	rs13221595	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr7	12504167	12504168	chr7:12504168:A:G	rs17166119	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr7	12583131	12583132	chr7:12583132:A:G	rs147303173	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	12583145	12583146	chr7:12583146:T:A	rs76189809	T	A	T	Msx3.mouse_homeodomain_1	13	1	-	9.552572047195167	5.3701635843552	ATATTTACATAGCAATTA
chr7	12674951	12674952	chr7:12674952:G:A	rs10488228	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	8.576920401621663	7.131797738055183	GCAATTGATAAGCGTTTA
chr7	12729544	12729545	chr7:12729545:T:C	rs12155360	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	12732381	12732382	chr7:12732382:A:G	rs73055481	A	G	-	Msx3.mouse_homeodomain_1	17	1	+	8.719719479172099	6.151559881988896	CAGATTAAAAATAAATTA
chr7	12952075	12952076	chr7:12952076:A:C	rs62446161	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	8.123940702977631	3.878924896505472	CCTGTTAGACTCCAATTA
chr7	12952083	12952084	chr7:12952084:A:G	rs201310718	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.123940702977631	3.535846483954482	CCTGTTAGACTCCAATTA
chr7	12952094	12952095	chr7:12952095:C:T	rs80122936	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr7	13062334	13062335	chr7:13062335:C:T	rs35023832	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr7	13062335	13062336	chr7:13062336:G:T	rs117969827	G	T	G	Msx3.mouse_homeodomain_1	0	1	+	7.791904490591533	6.60096223645674	GTAATTGGATGACACTTA
chr7	13062358	13062359	chr7:13062359:A:G	rs35432593	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr7	13191372	13191373	chr7:13191373:C:G	rs194036	C	G	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr7	13197764	13197765	chr7:13197765:G:A	rs10248755	G	A	A	Msx3.mouse_homeodomain_1	10	1	-	8.897925206382865	9.941897506256577	TCAATTAACCCGCAGTTA
chr7	13541394	13541395	chr7:13541395:C:A	rs10277308	C	A	A	Msx3.mouse_homeodomain_1	12	1	+	7.7931184812722405	5.281809721503415	TCAAGCAAATGCCAATTA
chr7	13541412	13541413	chr7:13541413:A:G	rs12534739	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	13551225	13551226	chr7:13551226:T:C	rs12699533	T	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	13848498	13848499	chr7:13848499:G:A	rs80140200	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	13861465	13861466	chr7:13861466:C:T	rs10282101	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr7	13978575	13978576	chr7:13978576:C:T	rs7802610	C	T	T	Msx3.mouse_homeodomain_1	9	1	-	8.361417691751452	9.301961684137598	TTAATTAACGTCTATTTA
chr7	14023935	14023936	chr7:14023936:A:G	rs62452789	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.058611464597956	4.08918048822908	TCAATTCTGGTGTAATTA
chr7	14260426	14260427	chr7:14260427:T:A	rs6971533	T	A	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr7	14447032	14447033	chr7:14447033:A:G	rs10950526	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr7	14447047	14447048	chr7:14447048:A:G	rs6943928	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	8.87675901344166	8.546818060725563	ATAATGATATTACAATTA
chr7	14495897	14495898	chr7:14495898:C:G	rs2116314	C	G	C	Msx3.mouse_homeodomain_1	11	1	-	7.575371635935258	7.660837176645519	GCAACAAATTTGCAATTA
chr7	14748397	14748398	chr7:14748398:G:C	rs151170232	G	C	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	15555610	15555611	chr7:15555611:T:C	rs75618390	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	7.7975859447709945	5.355508717839437	GCTGTTAAGAAGAAATTA
chr7	15765321	15765322	chr7:15765322:G:A	rs114990047	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr7	15853741	15853742	chr7:15853742:G:A	rs38170	G	A	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr7	16023332	16023333	chr7:16023333:T:C	rs1528146	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	13.216287789256386	6.30882255233238	GCAATTAAAATCTAATTT
chr7	16129833	16129834	chr7:16129834:C:A	rs7786887	C	A	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	16397739	16397740	chr7:16397740:C:A	rs17674339	C	A	C	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr7	16397740	16397741	chr7:16397741:G:A	rs190200865	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	16397760	16397761	chr7:16397761:G:T	rs10232515	G	T	-	Msx3.mouse_homeodomain_1	7	1	-	6.185153847155097	7.575040393859855	CCAATCACGTGCCAATCG
chr7	16400265	16400266	chr7:16400266:C:A	rs6949112	C	A	C	Msx3.mouse_homeodomain_1	8	1	-	6.990405517446555	6.959684377134212	GTAATCACGTGACAATCA
chr7	16400284	16400285	chr7:16400285:T:C	rs17169463	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr7	16422077	16422078	chr7:16422078:C:T	rs74751250	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr7	16667576	16667577	chr7:16667577:C:T	rs561466562	C	T	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr7	16794736	16794737	chr7:16794737:T:C	rs2272247	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.742591261624426	4.773160285255548	TCAATTGAAGATGAATTA
chr7	16833731	16833732	chr7:16833732:A:G	rs28945075	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr7	17626582	17626583	chr7:17626583:C:T	rs7778100	C	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr7	18038536	18038537	chr7:18038537:T:A	rs79605413	T	A	A	Msx3.mouse_homeodomain_1	10	1	-	9.647106999571424	9.153535475596303	GCAATTAGATAAAACTTA
chr7	18089394	18089395	chr7:18089395:A:G	rs117021347	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	18339194	18339195	chr7:18339195:A:C	rs77510397	A	C	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr7	18846553	18846554	chr7:18846554:G:A	rs17140133	G	A	A	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr7	18866884	18866885	chr7:18866885:A:C	rs146650699	A	C	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr7	18903053	18903054	chr7:18903054:A:G	rs80138529	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr7	18939892	18939893	chr7:18939893:A:G	rs10223990	A	G	A	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	19405572	19405573	chr7:19405573:A:T	rs557027992	A	T	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr7	19464498	19464499	chr7:19464499:C:G	rs66817735	C	G	C	Msx3.mouse_homeodomain_1	4	1	-	6.713651244021404	6.273094816101968	CCAAGTAACCACCACTTA
chr7	19530585	19530586	chr7:19530586:T:C	rs9648260	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	7.949225158455984	1.8506794785868486	CCAATTGAATAATGATTG
chr7	19586374	19586375	chr7:19586375:A:G	rs28478330	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr7	20117295	20117296	chr7:20117296:A:G	rs4719603	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	11.93081236505699	7.34271814603384	CCCATTAACTACAAATTA
chr7	20310246	20310247	chr7:20310247:T:A	rs6960555	T	A	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr7	20560206	20560207	chr7:20560207:G:C	rs10241550	G	C	G	Msx3.mouse_homeodomain_1	0	1	-	7.852518937295577	8.21987044717019	CTACTCATAAACCAATCA
chr7	20607391	20607392	chr7:20607392:C:G	rs10950821	C	G	G	Msx3.mouse_homeodomain_1	0	1	-	8.179158744805228	7.8118072349306145	GTAATCATTTATCCATTA
chr7	20751143	20751144	chr7:20751144:A:G	rs4721944	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.385947745230099	2.7978535262069495	CATATTAAGGAGCCATTA
chr7	21011237	21011238	chr7:21011238:T:C	rs34346814	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.774529807563625	3.805098831194749	GCAATTCAGATCTACTTA
chr7	21043365	21043366	chr7:21043366:C:T	rs115567072	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr7	21076336	21076337	chr7:21076337:C:T	rs76386279	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr7	21126074	21126075	chr7:21126075:A:G	rs17143897	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr7	21426595	21426596	chr7:21426596:A:G	rs117546732	A	G	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	21480513	21480514	chr7:21480514:G:A	rs10272006	G	A	A	Msx3.mouse_homeodomain_1	9	1	-	9.644010201460155	10.536099233531402	ACAATTCTACGGCAATTA
chr7	21507983	21507984	chr7:21507984:A:G	rs78067595	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	21605367	21605368	chr7:21605368:G:A	rs11976814	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	9.888890656484588	9.041047785603904	CCAATTAACAAAGAATTG
chr7	21948265	21948266	chr7:21948266:T:G	rs1534771	T	G	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr7	22179742	22179743	chr7:22179743:T:C	rs58186365	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	8.209258954859468	2.1107132749903363	CTCATCACATGCTAATTA
chr7	22229425	22229426	chr7:22229426:G:A	rs10266901	G	A	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr7	22378135	22378136	chr7:22378136:T:G	rs6942620	T	G	T	Msx3.mouse_homeodomain_1	3	1	+	7.311118478058339	8.469037841837554	CTATTCATCTAGCAATTA
chr7	22378140	22378141	chr7:22378141:C:A	rs10807812	C	A	C	Msx3.mouse_homeodomain_1	8	1	+	7.311118478058339	8.230685302690894	CTATTCATCTAGCAATTA
chr7	22478805	22478806	chr7:22478806:C:G	rs757954	C	G	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr7	22732811	22732812	chr7:22732812:T:C	rs2069854	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	22758645	22758646	chr7:22758646:T:A	rs7808457	T	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr7	22802699	22802700	chr7:22802700:A:G	rs10262258	A	G	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr7	22822019	22822020	chr7:22822020:C:A	rs981792	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	22827851	22827852	chr7:22827852:T:G	rs77013197	T	G	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr7	23205255	23205256	chr7:23205256:A:T	rs858299	A	T	a	Msx3.mouse_homeodomain_1	15	1	-	10.1703143970087	4.091400977650844	TCAATTAAAAAAAAATTT
chr7	23967852	23967853	chr7:23967853:A:G	rs7802177	A	G	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr7	24122807	24122808	chr7:24122808:C:T	rs934639469	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr7	24122808	24122809	chr7:24122809:G:A	rs412194	G	A	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr7	24136233	24136234	chr7:24136234:T:C	rs198736	T	C	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr7	24162669	24162670	chr7:24162670:G:A	rs156277	G	A	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr7	24228310	24228311	chr7:24228311:T:C	rs2240124	T	C	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr7	24291145	24291146	chr7:24291146:A:C	rs16129	A	C	C	Msx3.mouse_homeodomain_1	9	1	-	11.832296969304227	11.305894248791166	TCAATCAGGTTGCAATTA
chr7	24428919	24428920	chr7:24428920:T:C	rs12533743	T	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr7	24765340	24765341	chr7:24765341:C:T	rs9648314	C	T	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr7	24824597	24824598	chr7:24824598:T:C	rs73088352	T	C	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr7	24834879	24834880	chr7:24834880:C:T	rs2285689	C	T	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr7	25049439	25049440	chr7:25049440:A:G	rs4236318	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr7	25216116	25216117	chr7:25216117:A:C	rs10263792	A	C	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr7	25352118	25352119	chr7:25352119:T:C	rs12700619	T	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr7	25391728	25391729	chr7:25391729:C:T	rs7806798	C	T	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr7	25477180	25477181	chr7:25477181:C:A	rs17150486	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	8.444071526424084	5.932762766655257	ACACTTAAGTAGCAATTC
chr7	25656991	25656992	chr7:25656992:T:C	rs11509164	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr7	25672652	25672653	chr7:25672653:C:T	rs10951084	C	T	T	Msx3.mouse_homeodomain_1	9	1	-	8.538028997868125	9.478572990254271	CTAATTATCGAATAATCA
chr7	25721436	25721437	chr7:25721437:C:T	rs714063	C	T	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr7	25842105	25842106	chr7:25842106:A:C	rs10267498	A	C	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr7	25847657	25847658	chr7:25847658:G:A	rs2290263	G	A	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr7	25847695	25847696	chr7:25847696:C:T	rs1376528	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	8.88857826994477	7.780068714780023	GCAATTGACTGATGATTA
chr7	25861545	25861546	chr7:25861546:T:C	rs528397717	T	C	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr7	25886828	25886829	chr7:25886829:G:A	rs113131063	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	26204744	26204745	chr7:26204745:T:C	rs2391265	T	C	C	Msx3.mouse_homeodomain_1	7	1	+	8.92117566995153	8.591234717235434	TTAATGATTGAGCAATTA
chr7	26385423	26385424	chr7:26385424:G:T	chr7:26385424:G:T	G	T	G	Msx3.mouse_homeodomain_1	16	1	-	6.525819179587368	5.765930405658163	CCACTTATGAACCACTCA
chr7	26646910	26646911	chr7:26646911:C:T	rs188233798	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	6.616021958620469	5.507512403455725	GTGATTACAGAGCACTTG
chr7	26653541	26653542	chr7:26653542:G:A	rs1008875641	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr7	26674670	26674671	chr7:26674671:C:T	rs7786456	C	T	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	26682863	26682864	chr7:26682864:T:C	rs11982489	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	9.355482293086354	6.7873226959031525	TCAGTTAACATGAAATTA
chr7	26726367	26726368	chr7:26726368:T:G	rs11976472	T	G	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr7	26949591	26949592	chr7:26949592:G:C	rs2712245	G	C	C	Msx3.mouse_homeodomain_1	12	1	-	7.460032124730275	3.960649106114116	ACAATTAACAAGCGTTTG
chr7	27532325	27532326	chr7:27532326:A:G	rs11767188	A	G	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	27609001	27609002	chr7:27609002:C:A	rs41326151	C	A	C	Msx3.mouse_homeodomain_1	7	1	+	12.916011191960038	14.305897738664797	GAAATTACAGTGCAATTA
chr7	28144082	28144083	chr7:28144083:T:C	rs849140	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	28149791	28149792	chr7:28149792:T:C	rs1635852	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	10.196388080135055	6.2269571037661775	TGAATTAATCAGTAATTA
chr7	28363293	28363294	chr7:28363294:A:G	rs7789122	A	G	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr7	28390140	28390141	chr7:28390141:G:A	rs79964624	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr7	28479180	28479181	chr7:28479181:C:T	rs217511	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	28479191	28479192	chr7:28479192:A:G	rs139754959	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	10.492880851788609	7.976012223851533	GTACTTATACTCTAATTA
chr7	28582733	28582734	chr7:28582734:G:A	rs216750	G	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr7	28971447	28971448	chr7:28971448:C:T	rs4719963	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	28971485	28971486	chr7:28971486:T:G	rs221181	T	G	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr7	29000694	29000695	chr7:29000695:C:T	rs7457716	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr7	29007355	29007356	chr7:29007356:T:C	rs521384	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr7	29043372	29043373	chr7:29043373:T:C	rs317764	T	C	T	Msx3.mouse_homeodomain_1	9	1	+	12.473197513435675	11.581108481364424	CCCATTACCTTGCAATTA
chr7	29300744	29300745	chr7:29300745:A:C	rs3812339	A	C	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr7	29473390	29473391	chr7:29473391:A:G	rs7804908	A	G	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	29622762	29622763	chr7:29622763:C:T	rs569743582	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	6.333586652819902	4.8884639892534185	GCAATTGGCAGCCGATTC
chr7	30083528	30083529	chr7:30083529:A:G	rs17158618	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr7	30473121	30473122	chr7:30473122:G:A	rs2709801	G	A	A	Msx3.mouse_homeodomain_1	0	1	+	10.231751608921787	9.123242053757043	GCAATTACTACCTCATTA
chr7	30473154	30473155	chr7:30473155:A:C	rs2709800	A	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	30552141	30552142	chr7:30552142:C:T	rs38470	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	11.493279051438552	10.645436180557866	GCAATTACCAGGCACTTA
chr7	30702507	30702508	chr7:30702508:C:A	rs255124	C	A	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	30816189	30816190	chr7:30816190:A:G	rs10237363	A	G	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr7	30890430	30890431	chr7:30890431:C:T	rs7806278	C	T	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr7	31254667	31254668	chr7:31254668:G:T	rs2222540	G	T	G	Msx3.mouse_homeodomain_1	10	1	+	8.047992593608694	8.631012240570048	CTCATTATATGCTCATTA
chr7	31313042	31313043	chr7:31313043:A:C	chr7:31313043:A:C	A	C	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr7	31442830	31442831	chr7:31442831:A:G	rs218116	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr7	31647233	31647234	chr7:31647234:C:A	rs27328	C	A	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	32144950	32144951	chr7:32144951:C:T	rs2158689	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	32248746	32248747	chr7:32248747:C:G	rs56405980	C	G	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	32248769	32248770	chr7:32248770:C:T	rs60086427	C	T	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr7	32582142	32582143	chr7:32582143:T:C	rs114031135	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr7	32887534	32887535	chr7:32887535:A:G	rs10248993	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	33055369	33055370	chr7:33055370:C:T	rs10251079	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr7	33195061	33195062	chr7:33195062:G:C	rs7791710	G	C	C	Msx3.mouse_homeodomain_1	12	1	-	12.241116115894883	8.741733097278725	GCAATTAAATAACAGTTA
chr7	33671342	33671343	chr7:33671343:G:A	rs73097826	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr7	33754358	33754359	chr7:33754359:C:T	rs2111898	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	33822342	33822343	chr7:33822343:A:T	chr7:33822343:A:T	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	6.988505344409938	2.6617449930603803	GAAATTAGAAAGCAATGG
chr7	34163035	34163036	chr7:34163036:C:T	rs117979050	C	T	C	Msx3.mouse_homeodomain_1	14	1	-	10.484507400694923	15.072601619718075	GCAATTACTGAGCAGTTA
chr7	34589753	34589754	chr7:34589754:C:T	rs17185518	C	T	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	34672050	34672051	chr7:34672051:C:T	rs10486653	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	34672114	34672115	chr7:34672115:T:A	rs963219	T	A	A	Msx3.mouse_homeodomain_1	1	1	+	8.410489300863983	6.558042794804203	GTGCTTAAATAGCAATTT
chr7	34756073	34756074	chr7:34756074:C:G	rs35992792	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr7	34778500	34778501	chr7:34778501:A:T	rs324981	A	T	T	Msx3.mouse_homeodomain_1	15	1	-	6.326311960927778	0.24739854156992136	CCAGTGAATCGCCAATTA
chr7	35041318	35041319	chr7:35041319:T:G	rs329277	T	G	.	Msx3.mouse_homeodomain_1	5	1	-	8.3853465572815	8.813762861927382	GCAATAGAGTAGCAATTT
chr7	35356347	35356348	chr7:35356348:C:A	rs59332197	C	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr7	35521335	35521336	chr7:35521336:T:C	rs343070	T	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	35803113	35803114	chr7:35803114:A:G	rs6956863	A	G	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr7	35993480	35993481	chr7:35993481:A:G	rs10254864	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	8.569075563756224	5.4441264101623705	CCAATTGTAGTACAATTT
chr7	36064655	36064656	chr7:36064656:T:A	rs1882051	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	7.598019391083263	3.2712590397337076	CTCATTGTACGCTAATTA
chr7	36204212	36204213	chr7:36204213:T:A	rs7807784	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	10.99390514126888	4.914991721911024	CCAATTAAAAAAAAATTT
chr7	36290375	36290376	chr7:36290376:G:C	rs11770421	G	C	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr7	36306887	36306888	chr7:36306888:A:G	rs17210219	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	6.094797821638909	-0.812667415285097	CCCATTGGAAACCACTTG
chr7	36391067	36391068	chr7:36391068:A:G	rs197356	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	36391083	36391084	chr7:36391084:T:G	rs12666341	T	G	T	Msx3.mouse_homeodomain_1	10	1	+	9.265504998187545	8.682485351226191	GCAATTAGAGTTTACTTA
chr7	36392728	36392729	chr7:36392729:T:A	rs197358	T	A	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	36614631	36614632	chr7:36614632:T:C	rs2001599	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	6.655721619411634	-0.25174361751237084	CCAACAAAGTGGCAATTA
chr7	36667050	36667051	chr7:36667051:G:A	rs11766967	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	9.214200633999212	8.105691078834468	GTCCTTAAATGTCAATTA
chr7	36681426	36681427	chr7:36681427:C:T	rs4457232	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr7	36790131	36790132	chr7:36790132:G:T	rs7805522	G	T	T	Msx3.mouse_homeodomain_1	12	1	-	8.242200657761636	5.730891897992811	ATCATAATTGAGCAATTA
chr7	36883645	36883646	chr7:36883646:T:C	rs4723587	T	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr7	37295503	37295504	chr7:37295504:T:A	rs2717987	T	A	A	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr7	37772150	37772151	chr7:37772151:A:G	rs73353212	A	G	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr7	38069062	38069063	chr7:38069063:A:G	rs1568758	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	38106021	38106022	chr7:38106022:A:T	rs541000244	A	T	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	38297987	38297988	chr7:38297988:T:C	rs13222240	T	C	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	38593050	38593051	chr7:38593051:T:C	rs12701637	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr7	39360271	39360272	chr7:39360272:A:T	rs12533481	A	T	A	Msx3.mouse_homeodomain_1	17	1	+	8.677389470547325	5.306603274668529	GCAGTTACCTATTAATTA
chr7	39535901	39535902	chr7:39535902:A:G	rs73375606	A	G	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	39827724	39827725	chr7:39827725:A:G	rs10275582	A	G	a	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr7	40096069	40096070	chr7:40096070:T:C	rs3801238	T	C	C	Msx3.mouse_homeodomain_1	6	1	-	6.482834199317392	4.040756972385836	ACCATGACCCTCCAATTA
chr7	40354897	40354898	chr7:40354898:G:A	rs17171693	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	40760896	40760897	chr7:40760897:C:T	rs78944381	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	40828116	40828117	chr7:40828117:G:T	rs61733279	G	T	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr7	41190173	41190174	chr7:41190174:T:A	rs76029190	T	A	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	41705893	41705894	chr7:41705894:G:C	rs568940371	G	C	G	Msx3.mouse_homeodomain_1	7	1	-	8.023202856433208	8.303273865814372	GCAATTACAGTAAAATAA
chr7	41830387	41830388	chr7:41830388:G:A	rs776858507	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr7	42234847	42234848	chr7:42234848:T:C	rs79212655	T	C	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr7	42868592	42868593	chr7:42868593:C:G	rs60327537	C	G	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	43176155	43176156	chr7:43176156:A:G	rs4720444	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr7	43422329	43422330	chr7:43422330:T:A	rs867876419	T	A	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	43422332	43422333	chr7:43422333:A:G	rs12666458	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr7	43517510	43517511	chr7:43517511:A:C	rs7802336	A	C	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr7	43618275	43618276	chr7:43618276:T:A	rs12702054	T	A	T	Msx3.mouse_homeodomain_1	7	1	-	8.920017957413899	7.860072363425241	TCAATAAAGAACCAATTC
chr7	43652058	43652059	chr7:43652059:C:T	rs1859875	C	T	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr7	44369213	44369214	chr7:44369214:T:G	rs10233353	T	G	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr7	44592644	44592645	chr7:44592645:A:G	rs10240767	A	G	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr7	45223548	45223549	chr7:45223549:G:A	rs62459213	G	A	G	Msx3.mouse_homeodomain_1	3	1	-	8.036951646474183	5.789775670858989	GAACTTAAAATGTCATTA
chr7	45223561	45223562	chr7:45223562:T:C	rs1294856	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr7	45262099	45262100	chr7:45262100:A:G	rs17805690	A	G	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	45515320	45515321	chr7:45515321:G:A	rs10279371	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr7	45562192	45562193	chr7:45562193:A:G	rs58732257	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	45677636	45677637	chr7:45677637:A:C	rs77043744	A	C	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	45867214	45867215	chr7:45867215:C:T	rs116676091	C	T	.	Msx3.mouse_homeodomain_1	11	1	-	10.143316620562413	8.946365595387	ATCATTACAAAGCAATTG
chr7	46006639	46006640	chr7:46006640:A:G	rs10256261	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	7.791037704218023	6.850493711831876	CCAATTAAGATAAAATGA
chr7	46070492	46070493	chr7:46070493:T:C	rs13240944	T	C	C	Msx3.mouse_homeodomain_1	0	1	+	10.67384846090436	11.49743920516454	TCCATTAAAAATCAATTG
chr7	46146813	46146814	chr7:46146814:A:T	rs62451994	A	T	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr7	46216047	46216048	chr7:46216048:A:G	rs78123299	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	6.7251749130725225	2.7557439367036443	CCAATCAGAGCCCCATTG
chr7	46216059	46216060	chr7:46216060:T:C	rs1003069259	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	6.7251749130725225	-0.18229032385148325	CCAATCAGAGCCCCATTG
chr7	46313105	46313106	chr7:46313106:T:C	rs4400289	T	C	c	Msx3.mouse_homeodomain_1	16	1	+	10.11653463937095	6.9915854857770965	CTAATTATATCCCTATTA
chr7	46558714	46558715	chr7:46558715:C:T	rs79260078	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr7	46719712	46719713	chr7:46719713:A:C	chr7:46719713:A:C	A	C	C	Msx3.mouse_homeodomain_1	6	1	+	7.446086770774733	3.2010709643025734	AAAATTACCAGCCAATAA
chr7	46932771	46932772	chr7:46932772:G:A	chr7:46932772:G:A	G	A	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr7	46970117	46970118	chr7:46970118:A:G	rs77821503	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	11.095055298378174	8.652978071446615	TTAATTACATGCAAATTA
chr7	47118683	47118684	chr7:47118684:A:G	rs10276089	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	11.648058981867088	7.059964762843939	CCAATTGAGATCCAATTG
chr7	47170631	47170632	chr7:47170632:C:T	rs2728490	C	T	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr7	47283079	47283080	chr7:47283080:A:G	rs7783188	A	G	G	Msx3.mouse_homeodomain_1	5	1	-	7.567815628525943	5.174829886015443	GCATTTCAGATGCAATTA
chr7	47846062	47846063	chr7:47846063:T:C	rs6975745	T	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr7	47896780	47896781	chr7:47896781:A:G	chr7:47896781:A:G	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.072503741540334	3.484409522517186	ACAATTAGCCACCCATCA
chr7	48084097	48084098	chr7:48084098:C:T	rs2348664	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr7	48595808	48595809	chr7:48595809:A:T	rs57370511	A	T	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr7	49176395	49176396	chr7:49176396:C:A	rs78373851	C	A	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr7	49324327	49324328	chr7:49324328:C:T	rs13222458	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr7	49631428	49631429	chr7:49631429:T:C	rs10276645	T	C	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	49823171	49823172	chr7:49823172:G:A	rs9656599	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr7	50093675	50093676	chr7:50093676:A:C	rs116946295	A	C	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	50151619	50151620	chr7:50151620:G:T	rs10260654	G	T	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	50191580	50191581	chr7:50191581:C:T	rs34095125	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr7	50227887	50227888	chr7:50227888:G:T	chr7:50227888:G:T	G	T	G	Msx3.mouse_homeodomain_1	7	1	-	7.389774703822867	8.779661250527624	GTACTTACCACCCACTTA
chr7	50266714	50266715	chr7:50266715:G:T	rs73346280	G	T	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr7	50295635	50295636	chr7:50295636:G:A	rs4917017	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr7	50309148	50309149	chr7:50309149:A:G	rs7782210	A	G	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	50309189	50309190	chr7:50309190:C:G	rs12718262	C	G	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr7	50580486	50580487	chr7:50580487:G:A	rs10238413	G	A	g	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr7	50749674	50749675	chr7:50749675:T:C	rs990358	T	C	t	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr7	52466322	52466323	chr7:52466323:C:G	rs2109950	C	G	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr7	52647109	52647110	chr7:52647110:A:T	rs28758841	A	T	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr7	52716221	52716222	chr7:52716222:T:C	rs6949581	T	C	T	Msx3.mouse_homeodomain_1	12	1	-	7.6886647059553	6.700590447107966	GGAGTTAAGAAGAAATTA
chr7	52853576	52853577	chr7:52853577:T:C	rs890634	T	C	c	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	53191705	53191706	chr7:53191706:T:C	rs1357965	T	C	N	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr7	54559447	54559448	chr7:54559448:A:T	rs185338244	A	T	A	Msx3.mouse_homeodomain_1	12	1	+	8.566101427613063	9.632287523815407	CTCATTAAAAAAAAATTG
chr7	55127612	55127613	chr7:55127613:A:T	rs190745793	A	T	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr7	55127650	55127651	chr7:55127651:A:T	rs10488141	A	T	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr7	55350334	55350335	chr7:55350335:T:G	rs145460796	T	G	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr7	55571298	55571299	chr7:55571299:T:C	chr7:55571299:T:C	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	11.800967225171945	7.8315362488030695	TTTATTAAAAAGTAATTA
chr7	56034437	56034438	chr7:56034438:G:C	rs577819018	G	C	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr7	58627586	58627587	chr7:58627587:G:T	rs1384582709	G	T	.	Msx3.mouse_homeodomain_1	12	1	-	6.611267948427511	4.099959188658684	GCAATTGTCCTCCAATCG
chr7	64665852	64665853	chr7:64665853:T:A	rs148578974	T	A	t	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr7	64892913	64892914	chr7:64892914:C:A	rs871076	C	A	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr7	64904002	64904003	chr7:64904003:C:A	rs4718163	C	A	C	Msx3.mouse_homeodomain_1	13	1	-	6.863118391668162	4.737984107734393	CCAATTAACCTCTGATGA
chr7	65798119	65798120	chr7:65798120:T:G	rs58267725	T	G	.	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr7	66168225	66168226	chr7:66168226:A:G	rs556536537	A	G	A	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr7	66198125	66198126	chr7:66198126:T:A	rs1565531	T	A	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr7	66314234	66314235	chr7:66314235:A:G	rs143089673	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	12.92746019906247	10.410591571125394	TCAATTAAAAAACAATCA
chr7	66534028	66534029	chr7:66534029:A:G	rs62465429	A	G	a	Msx3.mouse_homeodomain_1	14	1	+	9.096554033963052	4.508459814939902	TTACTAAGAATGCAATTA
chr7	66554202	66554203	chr7:66554203:G:A	rs13536	G	A	N	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	67349253	67349254	chr7:67349254:A:T	rs73148499	A	T	N	Msx3.mouse_homeodomain_1	14	1	+	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr7	68247339	68247340	chr7:68247340:T:C	rs77878213	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	7.588630926435294	3.0005367074121443	CCAATTAGGAACAGATAA
chr7	68486918	68486919	chr7:68486919:T:C	rs7802065	T	C	C	Msx3.mouse_homeodomain_1	9	1	+	9.22135955324887	8.329270521177623	CTAATAATATAAAAATTA
chr7	68936527	68936528	chr7:68936528:G:A	rs4082421	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	69208806	69208807	chr7:69208807:C:G	rs73155314	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr7	69470800	69470801	chr7:69470801:A:G	rs34117578	A	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr7	69569896	69569897	chr7:69569897:G:T	rs7797529	G	T	G	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr7	69596711	69596712	chr7:69596712:G:C	rs2253711	G	C	C	Msx3.mouse_homeodomain_1	0	1	+	8.749631091499253	8.382279581624644	GCTATTAAATTGTTATTA
chr7	69657756	69657757	chr7:69657757:G:A	rs11764277	G	A	G	Msx3.mouse_homeodomain_1	9	1	+	7.910824974147085	8.851368966533231	GAAATTAAGGAGAAATTT
chr7	69819108	69819109	chr7:69819109:T:C	rs58666988	T	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	70373008	70373009	chr7:70373009:A:G	rs11763292	A	G	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	70859527	70859528	chr7:70859528:C:T	rs1918420	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	70969594	70969595	chr7:70969595:C:T	rs112171230	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr7	71208921	71208922	chr7:71208922:G:A	rs17592881	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr7	71508461	71508462	chr7:71508462:G:A	rs4605942	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr7	71527344	71527345	chr7:71527345:C:T	rs12699049	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	71532292	71532293	chr7:71532293:T:C	rs7782114	T	C	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr7	71627946	71627947	chr7:71627947:G:A	rs73371247	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	7.24894380582765	6.401100934946965	CCCTTCAAGAACCAATTA
chr7	71953472	71953473	chr7:71953473:C:T	rs1076303	C	T	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr7	72266696	72266697	chr7:72266697:G:C	rs1034619	G	C	g	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr7	72475756	72475757	chr7:72475757:C:T	rs62465860	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	7.892303085427633	9.949577264333831	ACAATTAAGATGAGATTT
chr7	72926280	72926281	chr7:72926281:A:G	rs528679115	A	G	G	Msx3.mouse_homeodomain_1	16	1	-	7.704550762093733	4.57960160849988	GTTATTACAAACCGATTT
chr7	73358168	73358169	chr7:73358169:T:G	chr7:73358169:T:G	T	G	T	Msx3.mouse_homeodomain_1	8	1	-	8.592544672006003	7.672977847373448	GGAATCAAACAGCCATTA
chr7	73528285	73528286	chr7:73528286:C:A	chr7:73528286:C:A	C	A	c	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr7	73741146	73741147	chr7:73741147:T:A	rs7806956	T	A	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	74578673	74578674	chr7:74578674:C:A	rs184499734	C	A	C	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr7	75776232	75776233	chr7:75776233:G:A	rs111431252	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	76165899	76165900	chr7:76165900:G:A	rs115035619	G	A	.	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr7	76235604	76235605	chr7:76235605:C:T	rs76004352	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr7	77394089	77394090	chr7:77394090:C:T	rs77828255	C	T	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr7	77702740	77702741	chr7:77702741:G:C	rs10239156	G	C	N	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr7	77702742	77702743	chr7:77702743:G:C	rs10239157	G	C	g	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr7	77766917	77766918	chr7:77766918:G:A	rs10272202	G	A	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr7	77976695	77976696	chr7:77976696:T:C	rs1100237	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr7	78018004	78018005	chr7:78018005:T:C	rs4473963	T	C	T	Msx3.mouse_homeodomain_1	7	1	-	10.345595979140523	9.235780441816928	TCAATTAATTAGCCATTG
chr7	78477038	78477039	chr7:78477039:C:T	rs35126408	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr7	78692809	78692810	chr7:78692810:T:C	rs2190664	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	9.337516916233803	6.2125677626399485	ATAATTAACCACTACTTA
chr7	78905503	78905504	chr7:78905504:T:C	rs73144940	T	C	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	79638657	79638658	chr7:79638658:T:C	rs6945694	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	80053218	80053219	chr7:80053219:A:G	rs10271308	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	80162074	80162075	chr7:80162075:G:A	rs77864381	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	7.755540173425014	6.045309754441305	CTCATTCCAACCCAATTA
chr7	80221159	80221160	chr7:80221160:G:A	rs28647788	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	80444669	80444670	chr7:80444670:C:A	rs799963	C	A	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr7	80469547	80469548	chr7:80469548:C:T	rs17153990	C	T	T	Msx3.mouse_homeodomain_1	8	1	-	7.971501909315477	8.978051242160685	CTAATTCAGTGGAAATTA
chr7	80659726	80659727	chr7:80659727:A:T	rs3211883	A	T	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr7	80835280	80835281	chr7:80835281:C:T	rs12671772	C	T	c	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	80883219	80883220	chr7:80883220:A:G	rs11972268	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr7	80954146	80954147	chr7:80954147:G:A	rs12534486	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	81040544	81040545	chr7:81040545:G:A	rs10271057	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	81140610	81140611	chr7:81140611:C:T	rs7812231	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	81517223	81517224	chr7:81517224:T:C	rs7785977	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	11.405651539600647	4.4981863026766415	ATAATAATAAAACAATTA
chr7	81929678	81929679	chr7:81929679:A:C	rs13237413	A	C	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr7	81937444	81937445	chr7:81937445:G:T	rs1229495	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	10.194364187827134	8.569599309553688	CTAATTATATAGGGATTA
chr7	82319782	82319783	chr7:82319783:T:G	rs139132370	T	G	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr7	82319806	82319807	chr7:82319807:T:A	rs111855424	T	A	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr7	82319818	82319819	chr7:82319819:A:G	rs73704218	A	G	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr7	82438067	82438068	chr7:82438068:C:T	rs79837401	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	11.677183490790501	10.480232465615092	ATAATTGACAAGTAATTA
chr7	82440857	82440858	chr7:82440858:T:A	rs10240637	T	A	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr7	82496067	82496068	chr7:82496068:G:A	rs76181171	G	A	G	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr7	82544524	82544525	chr7:82544525:G:A	rs75651940	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	82600217	82600218	chr7:82600218:C:G	rs11772324	C	G	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr7	82695511	82695512	chr7:82695512:G:T	rs7786659	G	T	t	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr7	82705007	82705008	chr7:82705008:A:G	rs8180764	A	G	A	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr7	82773705	82773706	chr7:82773706:T:C	rs17283419	T	C	T	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr7	82878894	82878895	chr7:82878895:A:G	rs10243348	A	G	G	Msx3.mouse_homeodomain_1	13	1	+	8.173435756075165	6.116161577168968	CCAATAAAACAGTATTTA
chr7	83321114	83321115	chr7:83321115:A:G	chr7:83321115:A:G	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr7	83395925	83395926	chr7:83395926:A:G	rs2709921	A	G	A	Msx3.mouse_homeodomain_1	3	1	-	8.05514582965916	10.302321805274353	CTATTTATAACGTAATTA
chr7	83606248	83606249	chr7:83606249:G:T	rs115122284	G	T	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	83955424	83955425	chr7:83955425:A:G	rs797826	A	G	G	Msx3.mouse_homeodomain_1	17	1	+	7.589394199664874	5.021234602481672	GCAATGATTCTGAAATTA
chr7	84097393	84097394	chr7:84097394:A:C	rs7797860	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	8.872538406152682	1.9650731692286763	GTGATTAAAAAATACTTA
chr7	84182655	84182656	chr7:84182656:A:G	rs34406409	A	G	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr7	84207840	84207841	chr7:84207841:C:A	rs13230138	C	A	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr7	84365082	84365083	chr7:84365083:A:C	rs7808081	A	C	C	Msx3.mouse_homeodomain_1	16	1	+	10.390740188663749	11.150628962592954	ACAATTAAATAATAATAA
chr7	84813513	84813514	chr7:84813514:G:A	rs1609877	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr7	85791615	85791616	chr7:85791616:T:C	rs149396246	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	8.183062455033223	3.5949682360100725	GCAGTTGTCTCCCAATTA
chr7	85987806	85987807	chr7:85987807:A:G	rs34870757	A	G	A	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr7	85997644	85997645	chr7:85997645:G:C	rs557416436	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr7	86502512	86502513	chr7:86502513:T:C	rs2110388	T	C	C	Msx3.mouse_homeodomain_1	9	1	-	7.893295671396758	6.952751679010613	TTAATCTGCATGCAATTA
chr7	86937651	86937652	chr7:86937652:A:C	rs113308862	A	C	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr7	87119880	87119881	chr7:87119881:C:T	rs17698411	C	T	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr7	87312627	87312628	chr7:87312628:T:G	rs185522336	T	G	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr7	87473946	87473947	chr7:87473947:T:C	rs4148809	T	C	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr7	87797537	87797538	chr7:87797538:C:T	rs12533477	C	T	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	88022251	88022252	chr7:88022252:C:A	rs10235694	C	A	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	88969512	88969513	chr7:88969513:C:A	rs2373746	C	A	A	Msx3.mouse_homeodomain_1	17	1	+	6.85131241008075	11.43816899120726	GCCATTAGGCAACAATTC
chr7	89002492	89002493	chr7:89002493:C:T	rs13239778	C	T	T	Msx3.mouse_homeodomain_1	1	1	+	8.891518535531766	8.04367566465108	TCTATAACAAGCCAATTA
chr7	89306179	89306180	chr7:89306180:A:G	rs38930	A	G	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr7	89376426	89376427	chr7:89376427:C:T	chr7:89376427:C:T	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr7	89757879	89757880	chr7:89757880:T:C	rs7349967	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr7	90600267	90600268	chr7:90600268:T:C	rs1024408	T	C	C	Msx3.mouse_homeodomain_1	8	1	-	9.406723698426982	8.400174365581774	ATAATTAAATTCCCATTT
chr7	90760122	90760123	chr7:90760123:T:C	rs2188242	T	C	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr7	90790275	90790276	chr7:90790276:C:A	rs10275760	C	A	A	Msx3.mouse_homeodomain_1	7	1	-	8.05394496955574	8.103814912890677	ATAATTAGTCTCAGATTA
chr7	90945690	90945691	chr7:90945691:G:A	rs115189987	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr7	90945706	90945707	chr7:90945707:C:T	rs117526299	C	T	c	Msx3.mouse_homeodomain_1	9	1	+	9.575901560166681	10.467990592237932	GTAATTACACGCTCATTA
chr7	90987787	90987788	chr7:90987788:A:G	rs802404	A	G	G	Msx3.mouse_homeodomain_1	13	1	+	12.3171015231496	10.259827344243401	ACTATTAAATAGTAATTA
chr7	90989635	90989636	chr7:90989636:G:T	rs802405	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr7	91202217	91202218	chr7:91202218:C:T	rs73215191	C	T	C	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr7	91202221	91202222	chr7:91202222:C:T	rs73215194	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr7	92255313	92255314	chr7:92255314:C:T	rs12670516	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr7	92282845	92282846	chr7:92282846:A:G	rs79749467	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr7	92567446	92567447	chr7:92567447:A:G	rs41412153	A	G	G	Msx3.mouse_homeodomain_1	3	1	+	8.851509988289042	4.882079011920165	TACATAAAAATGCAATTA
chr7	92595473	92595474	chr7:92595474:A:G	rs191443009	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	9.296192877026467	2.3887276401024633	AAAATTACAGTGAAATTA
chr7	92697711	92697712	chr7:92697712:A:G	rs3731326	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr7	92770558	92770559	chr7:92770559:C:T	rs539000526	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr7	92973485	92973486	chr7:92973486:A:G	rs17164895	A	G	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr7	93919958	93919959	chr7:93919959:G:C	rs180245	G	C	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	93945681	93945682	chr7:93945682:T:A	rs34766930	T	A	T	Msx3.mouse_homeodomain_1	2	1	-	6.662581220293418	3.5071536020807983	GCACTCAGTGACTGATTA
chr7	93961367	93961368	chr7:93961368:A:G	rs4729103	A	G	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr7	94039558	94039559	chr7:94039559:C:T	rs12673626	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	94039600	94039601	chr7:94039601:T:C	rs10233835	T	C	t	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr7	94062494	94062495	chr7:94062495:G:A	rs73229386	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	8.076678015258548	7.303837838516652	CTCATTATGAAATGATTA
chr7	94266196	94266197	chr7:94266197:C:T	rs187995097	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr7	94402899	94402900	chr7:94402900:A:G	rs2299417	A	G	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr7	94897676	94897677	chr7:94897677:T:A	rs141260441	T	A	T	Msx3.mouse_homeodomain_1	9	1	-	10.374477813521853	9.960336541648768	ATAATTAACATAGAATTA
chr7	94940368	94940369	chr7:94940369:G:C	rs1918471	G	C	C	Msx3.mouse_homeodomain_1	3	1	-	11.004025611608704	9.914768999772729	GTACTTAAAAAAAAATTA
chr7	95105657	95105658	chr7:95105658:G:A	rs10258312	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr7	95504703	95504704	chr7:95504704:C:T	rs2074125	C	T	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr7	95636300	95636301	chr7:95636301:G:A	rs73708086	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	95811007	95811008	chr7:95811008:T:G	rs112666804	T	G	T	Msx3.mouse_homeodomain_1	16	1	+	7.778010946125813	2.704478170016484	CAGATTAGCAGCCGATTA
chr7	95902232	95902233	chr7:95902233:T:C	rs117073758	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr7	96246343	96246344	chr7:96246344:G:C	rs12704838	G	C	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	96421824	96421825	chr7:96421825:A:C	rs17308346	A	C	A	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	96892197	96892198	chr7:96892198:A:T	rs6960604	A	T	A	Msx3.mouse_homeodomain_1	8	1	-	7.851766487366704	8.889036960524255	CCAATTAGTATAGCATTA
chr7	97079176	97079177	chr7:97079177:G:C	rs145867680	G	C	G	Msx3.mouse_homeodomain_1	5	1	-	11.23386387226168	9.184267837305018	CCAATCACATAATAATTA
chr7	97851676	97851677	chr7:97851677:T:C	rs7803055	T	C	.	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr7	97870097	97870098	chr7:97870098:A:C	rs17345759	A	C	.	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr7	98382729	98382730	chr7:98382730:C:T	rs184173018	C	T	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	98476915	98476916	chr7:98476916:C:T	rs17147641	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr7	98754051	98754052	chr7:98754052:C:T	rs13220965	C	T	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr7	99510103	99510104	chr7:99510104:C:A	rs3901286	C	A	A	Msx3.mouse_homeodomain_1	9	1	+	8.839831966443866	10.146062270388198	CTAATTAAACAAAAATTT
chr7	99827861	99827862	chr7:99827862:A:G	rs45483793	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	100082066	100082067	chr7:100082067:A:G	rs553624397	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr7	100082096	100082097	chr7:100082097:T:C	rs60594059	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	9.039380234658182	7.995407934784468	GCAGTAAACATACAATTA
chr7	100515249	100515250	chr7:100515250:A:C	rs533219099	A	C	A	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr7	100873421	100873422	chr7:100873422:C:T	rs6706	C	T	C	Msx3.mouse_homeodomain_1	5	1	+	8.146504430471253	10.539490172981754	CCAATCAAGAAATAATAA
chr7	100916419	100916420	chr7:100916420:A:G	rs115452056	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr7	101058837	101058838	chr7:101058838:A:C	rs57645356	A	C	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr7	101343010	101343011	chr7:101343011:G:A	rs10248719	G	A	G	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr7	101532179	101532180	chr7:101532180:A:G	rs17386098	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr7	101559427	101559428	chr7:101559428:G:A	rs10447813	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr7	101625623	101625624	chr7:101625624:C:A	rs13221724	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	101814696	101814697	chr7:101814697:T:C	rs116944819	T	C	T	Msx3.mouse_homeodomain_1	8	1	+	6.949623447313427	7.067327095838423	GCAATTGTTTTCCACTTG
chr7	101878135	101878136	chr7:101878136:A:G	rs36025429	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr7	101927802	101927803	chr7:101927803:C:T	rs2906648	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr7	101964799	101964800	chr7:101964800:A:G	rs441601	A	G	.	Msx3.mouse_homeodomain_1	15	1	-	6.254922503756489	-0.6525427331675169	GCAACCATCCTCCAATTA
chr7	102069896	102069897	chr7:102069897:G:C	rs405141	G	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr7	102122713	102122714	chr7:102122714:A:G	rs781975895	A	G	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	102326442	102326443	chr7:102326443:A:G	rs75738062	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr7	102331620	102331621	chr7:102331621:T:G	rs2260832	T	G	.	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr7	102842079	102842080	chr7:102842080:T:C	rs12113073	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	102926716	102926717	chr7:102926717:G:A	rs112879389	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	102926721	102926722	chr7:102926722:G:A	rs4398822	G	A	G	Msx3.mouse_homeodomain_1	0	1	+	7.3115655954837475	6.203056040319003	GCAATTAAAAACTGATCC
chr7	103441415	103441416	chr7:103441416:T:C	rs2108264	T	C	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr7	103501413	103501414	chr7:103501414:C:T	rs79861185	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	103576890	103576891	chr7:103576891:A:G	rs362649	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	9.010683424281313	5.0412524479124325	CCAATTGCTTTCCAATTT
chr7	103601548	103601549	chr7:103601549:G:C	rs362637	G	C	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	103695567	103695568	chr7:103695568:A:C	rs722613	A	C	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	103718472	103718473	chr7:103718473:C:A	rs2299371	C	A	C	Msx3.mouse_homeodomain_1	7	1	+	7.480113380377319	8.869999927082077	GTAATTACGTACTGATAA
chr7	103735718	103735719	chr7:103735719:C:A	rs17155063	C	A	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr7	103805573	103805574	chr7:103805574:C:T	rs67399010	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	103930318	103930319	chr7:103930319:C:T	rs6972635	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr7	104773320	104773321	chr7:104773321:C:T	rs12540437	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr7	104784862	104784863	chr7:104784863:T:C	rs34911344	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr7	104797418	104797419	chr7:104797419:A:G	rs2470959	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	105444340	105444341	chr7:105444341:G:T	rs68062651	G	T	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr7	105493505	105493506	chr7:105493506:G:C	rs6965760	G	C	G	Msx3.mouse_homeodomain_1	0	1	-	11.128549140848659	11.495900650723268	CCAATTAAGTAACATTTA
chr7	105657307	105657308	chr7:105657308:T:C	rs573017	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	6.524459567842979	0.425913887973844	CCAATTGACACACCATTG
chr7	105692008	105692009	chr7:105692009:A:G	rs60899928	A	G	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr7	105736388	105736389	chr7:105736389:C:G	rs71564735	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr7	105759869	105759870	chr7:105759870:C:T	rs7802434	C	T	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr7	105982148	105982149	chr7:105982149:G:A	rs193793	G	A	g	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr7	106110251	106110252	chr7:106110252:A:C	rs1437754362	A	C	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr7	106128848	106128849	chr7:106128849:A:G	rs10808148	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	8.26792359395855	2.169377914089418	TTAATGATAGTACAATTA
chr7	106135117	106135118	chr7:106135118:A:G	rs7785757	A	G	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr7	106424727	106424728	chr7:106424728:G:A	rs2704975	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	106534446	106534447	chr7:106534447:C:T	rs2392907	C	T	T	Msx3.mouse_homeodomain_1	7	1	+	10.602244697369969	10.932185650086069	CTCATTACATGCTAATTA
chr7	106623433	106623434	chr7:106623434:C:T	rs41834	C	T	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr7	106842309	106842310	chr7:106842310:A:G	rs42171	A	G	A	Msx3.mouse_homeodomain_1	8	1	-	6.912795020419838	7.030498668944834	GGACTTAATCACCAATCA
chr7	106842318	106842319	chr7:106842319:A:G	rs76655053	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr7	107043801	107043802	chr7:107043802:A:C	rs722236	A	C	C	Msx3.mouse_homeodomain_1	10	1	-	10.655230107777754	10.0722104608164	TCAATTAAATTCTATTTA
chr7	107391103	107391104	chr7:107391104:G:C	rs75672288	G	C	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr7	107494382	107494383	chr7:107494383:T:C	rs1015410	T	C	C	Msx3.mouse_homeodomain_1	9	1	-	10.161297682143125	9.220753689756979	CTAATTAAAACATCATTA
chr7	108047227	108047228	chr7:108047228:T:C	rs77379201	T	C	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr7	108099951	108099952	chr7:108099952:C:G	rs73725332	C	G	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr7	108308025	108308026	chr7:108308026:C:T	rs17155411	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr7	108427968	108427969	chr7:108427969:T:C	rs4730319	T	C	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr7	108523399	108523400	chr7:108523400:A:G	rs143487853	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr7	108648731	108648732	chr7:108648732:A:T	rs10247793	A	T	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr7	109926973	109926974	chr7:109926974:C:T	rs3114776	C	T	T	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr7	110442994	110442995	chr7:110442995:C:G	rs211812	C	G	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr7	110521290	110521291	chr7:110521291:G:A	rs6975627	G	A	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr7	110564930	110564931	chr7:110564931:T:C	rs17473554	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr7	110919266	110919267	chr7:110919267:T:A	rs112702862	T	A	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr7	111357806	111357807	chr7:111357807:C:G	rs1409915891	C	G	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr7	111509614	111509615	chr7:111509615:T:C	rs10264707	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	111677162	111677163	chr7:111677163:T:C	rs6978071	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	9.312540402463938	3.2139947225948036	GAAATTGTATAGAAATTA
chr7	111911211	111911212	chr7:111911212:T:C	rs7810960	T	C	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr7	111911213	111911214	chr7:111911214:G:T	rs7792335	G	T	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr7	112004815	112004816	chr7:112004816:T:A	rs55753148	T	A	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr7	112185664	112185665	chr7:112185665:C:T	rs71544730	C	T	C	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr7	112391239	112391240	chr7:112391240:G:A	rs4730533	G	A	A	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr7	112495432	112495433	chr7:112495433:A:T	rs2396551	A	T	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	112669604	112669605	chr7:112669605:T:A	rs756867	T	A	A	Msx3.mouse_homeodomain_1	7	1	-	6.475056200180746	5.415110606192088	ACACTCAAGACCCAATCA
chr7	114131262	114131263	chr7:114131263:A:T	rs12666413	A	T	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr7	114434201	114434202	chr7:114434202:C:T	rs10268637	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr7	114657124	114657125	chr7:114657125:G:A	rs936145	G	A	G	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr7	114831288	114831289	chr7:114831289:G:C	rs12705997	G	C	c	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr7	114973782	114973783	chr7:114973783:T:C	rs4730660	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr7	115087277	115087278	chr7:115087278:A:C	rs969916	A	C	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	115098000	115098001	chr7:115098001:C:T	rs28707225	C	T	T	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr7	115387924	115387925	chr7:115387925:T:A	rs73201933	T	A	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr7	115965100	115965101	chr7:115965101:C:A	rs4730701	C	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	116209744	116209745	chr7:116209745:A:G	rs533632780	A	G	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr7	116652771	116652772	chr7:116652772:T:G	rs79967602	T	G	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr7	116844427	116844428	chr7:116844428:A:C	rs41784	A	C	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr7	117199690	117199691	chr7:117199691:C:T	rs193577	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr7	117489349	117489350	chr7:117489350:T:C	rs885993	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr7	117835269	117835270	chr7:117835270:C:G	rs11977378	C	G	C	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr7	117835273	117835274	chr7:117835274:T:C	rs11980943	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	9.971139306117113	5.383045087093963	TTAATTAAACATGAATTA
chr7	118196170	118196171	chr7:118196171:A:G	rs10227326	A	G	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr7	118477217	118477218	chr7:118477218:A:G	rs147445546	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	9.994940742284143	3.8963950624150097	CCAATTAGCTCCCTATTA
chr7	118562605	118562606	chr7:118562606:T:C	rs2402365	T	C	t	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr7	118664338	118664339	chr7:118664339:G:T	rs13232398	G	T	G	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr7	118664358	118664359	chr7:118664359:A:G	rs11763035	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	11.015721273837094	11.863564144717778	GTAATTAAGGTTAAATTA
chr7	118711813	118711814	chr7:118711814:G:C	rs62477102	G	C	g	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	119696472	119696473	chr7:119696473:T:C	rs77155960	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	119704140	119704141	chr7:119704141:A:G	rs7789698	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr7	119969014	119969015	chr7:119969015:G:A	rs75842770	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	120395651	120395652	chr7:120395652:G:T	rs10225134	G	T	T	Msx3.mouse_homeodomain_1	3	1	-	8.356315567744986	11.236489932277888	TTACTTAGCATATAATTA
chr7	120779899	120779900	chr7:120779900:G:T	rs117934525	G	T	g	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	120873741	120873742	chr7:120873742:G:A	rs74369618	G	A	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	120950027	120950028	chr7:120950028:G:C	rs3757556	G	C	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	121215273	121215274	chr7:121215274:A:G	rs10251901	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.87580164511293	4.287707426089778	GCAATAAACATGTAATAA
chr7	121267828	121267829	chr7:121267829:G:A	rs78204988	G	A	G	Msx3.mouse_homeodomain_1	7	1	-	8.414753874650152	8.744694827366253	GTCATTACTCTGCAATTG
chr7	121287737	121287738	chr7:121287738:G:A	rs2952556	G	A	A	Msx3.mouse_homeodomain_1	13	1	-	8.436896345372043	7.138680939009452	TTAATTAAAATGCCATTC
chr7	121313701	121313702	chr7:121313702:G:A	rs76042375	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	121313723	121313724	chr7:121313724:G:A	rs112871029	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	8.763234217638917	10.820508396545112	ACAATTACCATAAGATTA
chr7	121387106	121387107	chr7:121387107:G:A	rs115320251	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr7	122056188	122056189	chr7:122056189:G:C	rs1206364	G	C	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	122349743	122349744	chr7:122349744:C:T	rs798679	C	T	C	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr7	122415819	122415820	chr7:122415820:A:G	rs6979826	A	G	A	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr7	122556444	122556445	chr7:122556445:T:C	rs6952265	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	8.985655267074996	6.417495669891793	AGAATTAAAAAACAATAA
chr7	122557419	122557420	chr7:122557420:T:C	rs118090210	T	C	T	Msx3.mouse_homeodomain_1	17	1	-	8.203603565644055	5.635443968460852	GCAGTAATTGTCCAATTA
chr7	122585542	122585543	chr7:122585543:T:C	rs7791524	T	C	C	Msx3.mouse_homeodomain_1	12	1	-	8.062038338246943	7.07396407939961	CCAATTAAGTAGAAAATA
chr7	122749342	122749343	chr7:122749343:T:A	rs2190252	T	A	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr7	122882685	122882686	chr7:122882686:T:G	rs2501440	T	G	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	123101433	123101434	chr7:123101434:G:A	rs73217749	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr7	123640420	123640421	chr7:123640421:C:T	rs12669587	C	T	C	Msx3.mouse_homeodomain_1	14	1	+	7.939283262163701	7.173501949068334	CCAATCAGAAATTACTTA
chr7	123770863	123770864	chr7:123770864:A:G	rs79415660	A	G	G	Msx3.mouse_homeodomain_1	17	1	+	12.003185706164743	9.435026108981539	CTTATTATGAAGCAATTA
chr7	123788861	123788862	chr7:123788862:G:T	rs77738210	G	T	G	Msx3.mouse_homeodomain_1	0	1	+	9.728525114060615	8.537582859925822	GTAATTGTAAGCCAATTT
chr7	123938557	123938558	chr7:123938558:T:C	rs17627051	T	C	C	Msx3.mouse_homeodomain_1	17	1	-	6.48343105097736	3.9152714537941575	GCAATAGGGACCCAATCA
chr7	124324556	124324557	chr7:124324557:A:C	rs62473426	A	C	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr7	124421240	124421241	chr7:124421241:G:T	rs2402724	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	9.692053601450311	6.991764224509844	GCAATTATTTCATGATTA
chr7	124674538	124674539	chr7:124674539:C:A	rs4731196	C	A	A	Msx3.mouse_homeodomain_1	16	1	+	8.094640671904354	7.334751897975148	TCAATTTGCATCCAATCA
chr7	125254679	125254680	chr7:125254680:A:G	rs17388921	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	8.058513776018422	5.616436549086866	ACAATTATAAGGAGATTG
chr7	125828620	125828621	chr7:125828621:G:T	rs10243926	G	T	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr7	125926804	125926805	chr7:125926805:G:A	rs78520622	G	A	A	Msx3.mouse_homeodomain_1	13	1	+	8.109431655774332	10.16670583468053	CCAATTATAAACCGCTTT
chr7	126052515	126052516	chr7:126052516:G:A	rs4489264	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	9.706903560241727	10.713452893086938	CAAATTAAGGGATAATTA
chr7	126286573	126286574	chr7:126286574:A:G	rs1719107	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr7	126532466	126532467	chr7:126532467:T:C	rs2283066	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	7.38064733217194	0.47318209524793375	ACAATTACCAAGCAATGG
chr7	127290973	127290974	chr7:127290974:A:G	rs1016944	A	G	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr7	127364963	127364964	chr7:127364964:T:A	rs17874842	T	A	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr7	127367365	127367366	chr7:127367366:C:T	rs17864204	C	T	C	Msx3.mouse_homeodomain_1	9	1	+	9.625709810943135	10.517798843014383	GCATTTACACGCCAATTA
chr7	127682559	127682560	chr7:127682560:C:T	rs712707	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	9.821118967432103	8.973276096551416	TCTATAAATTAGCAATTA
chr7	127718396	127718397	chr7:127718397:G:A	chr7:127718397:G:A	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr7	127875616	127875617	chr7:127875617:A:G	rs7783102	A	G	A	Msx3.mouse_homeodomain_1	2	1	+	9.103542343206168	6.58667371526909	CCACTTACAAAATGATTA
chr7	127940835	127940836	chr7:127940836:C:T	rs150479109	C	T	C	Msx3.mouse_homeodomain_1	14	1	+	8.231617003248541	7.465835690153175	GGAATTAGAAGACACTTA
chr7	127940847	127940848	chr7:127940848:A:G	rs73721261	A	G	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr7	127958005	127958006	chr7:127958006:C:T	rs35774036	C	T	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr7	128691630	128691631	chr7:128691631:G:T	rs4731503	G	T	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr7	128691657	128691658	chr7:128691658:A:G	rs73465147	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.047992593608694	3.459898374585543	CTCATTATATGCTCATTA
chr7	128729101	128729102	chr7:128729102:G:A	rs12531956	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	128741292	128741293	chr7:128741293:A:G	rs73236091	A	G	A	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr7	129052602	129052603	chr7:129052603:C:T	rs6960994	C	T	T	Msx3.mouse_homeodomain_1	3	1	+	9.424523947156501	7.17734797154131	ATACTTAAATAACAATTG
chr7	129214120	129214121	chr7:129214121:C:T	rs531345402	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	129214123	129214124	chr7:129214124:G:T	rs13237986	G	T	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr7	129343379	129343380	chr7:129343380:T:C	rs12533541	T	C	C	Msx3.mouse_homeodomain_1	2	1	-	8.734855151711354	6.217986523774276	ACAATTTAATTCCTATTA
chr7	129739172	129739173	chr7:129739173:T:C	rs10277673	T	C	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr7	129851370	129851371	chr7:129851371:C:G	rs151214659	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	10.55436300251235	7.290014145484034	GCAGTTAATGTGTAATTA
chr7	130054182	130054183	chr7:130054183:A:G	rs73481718	A	G	A	Msx3.mouse_homeodomain_1	7	1	-	6.922919452962204	6.592978500246105	GTAATCATGGGTCAATTG
chr7	130361779	130361780	chr7:130361780:A:G	rs148095514	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	7.600705819660584	5.158628592729027	CCCATCAGAAAGCAATTC
chr7	131023502	131023503	chr7:131023503:G:A	rs114845986	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr7	131061328	131061329	chr7:131061329:A:G	rs7787551	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	7.591538990759363	6.650994998373219	ACAATCAGCAGCCATTTA
chr7	131183133	131183134	chr7:131183134:A:G	rs143950060	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr7	131183147	131183148	chr7:131183148:A:G	rs77665861	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	9.351648732583072	8.241833195259478	ATCATTAAAAATCAATCA
chr7	131250649	131250650	chr7:131250650:A:T	rs7791813	A	T	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	131667222	131667223	chr7:131667223:G:A	rs111866353	G	A	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	131852550	131852551	chr7:131852551:T:C	rs4731822	T	C	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr7	132204542	132204543	chr7:132204543:C:T	rs12668459	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr7	132254993	132254994	chr7:132254994:G:T	rs6966281	G	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr7	132398630	132398631	chr7:132398631:C:A	rs76498803	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	8.892505300357156	6.381196540588332	CCAATTATAAATCAATCT
chr7	132840386	132840387	chr7:132840387:C:T	rs6467447	C	T	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr7	133089142	133089143	chr7:133089143:A:G	rs6955632	A	G	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr7	133855002	133855003	chr7:133855003:G:T	rs117420833	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	10.704825685719225	8.00453630877876	GCCATTATAATCCAATAA
chr7	133957805	133957806	chr7:133957806:A:G	rs2971966	A	G	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr7	133957841	133957842	chr7:133957842:A:G	rs2971967	A	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr7	133957845	133957846	chr7:133957846:C:A	rs2971968	C	A	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr7	134089637	134089638	chr7:134089638:C:A	chr7:134089638:C:A	C	A	C	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr7	134319288	134319289	chr7:134319289:G:A	rs35897242	G	A	A	Msx3.mouse_homeodomain_1	16	1	-	8.870978870318865	11.995928023912718	ACAATTAAGAAGTCATCA
chr7	134356951	134356952	chr7:134356952:C:T	rs1558995	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr7	134587845	134587846	chr7:134587846:A:G	rs10275567	A	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr7	134767531	134767532	chr7:134767532:T:C	rs117422408	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	8.761579417800988	5.6366302642071355	GCAATGCAAAGCCAATTA
chr7	134823388	134823389	chr7:134823389:T:C	rs1049022927	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.914730796494392	3.945299820125516	GCAATTCATATTCAATCA
chr7	134850592	134850593	chr7:134850593:A:G	rs12530891	A	G	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr7	134855105	134855106	chr7:134855106:G:A	rs741689	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	9.19985756716424	10.206406900009448	AGAATCATGATCCAATTA
chr7	134855699	134855700	chr7:134855700:G:C	rs112796016	G	C	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr7	135281535	135281536	chr7:135281536:C:T	rs13224172	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr7	135548342	135548343	chr7:135548343:A:G	rs3112384	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	9.329708704765379	2.422243467841375	CCCATTAAATACTAATTC
chr7	135924876	135924877	chr7:135924877:T:A	rs80098624	T	A	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr7	136168594	136168595	chr7:136168595:T:A	rs834778	T	A	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	136298203	136298204	chr7:136298204:A:C	rs17245717	A	C	A	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	136404885	136404886	chr7:136404886:T:C	rs1882087	T	C	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr7	136885528	136885529	chr7:136885529:T:A	rs6944132	T	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr7	136885564	136885565	chr7:136885565:A:G	rs17494846	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr7	137232003	137232004	chr7:137232004:G:C	rs17168993	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr7	137423779	137423780	chr7:137423780:C:G	rs12535976	C	G	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr7	137440435	137440436	chr7:137440436:T:C	rs1009939101	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr7	137851473	137851474	chr7:137851474:C:G	rs1045096701	C	G	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr7	137877757	137877758	chr7:137877758:T:C	rs6959012	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	8.68324483148627	4.09515061246312	GTCATTAACTTATGATTA
chr7	140162028	140162029	chr7:140162029:A:C	rs62491431	A	C	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr7	140691782	140691783	chr7:140691783:T:C	rs78132204	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr7	140691783	140691784	chr7:140691784:C:G	rs2930315	C	G	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr7	141214940	141214941	chr7:141214941:G:A	rs10246772	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	141431874	141431875	chr7:141431875:T:C	rs1181737	T	C	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr7	142111196	142111197	chr7:142111197:C:T	rs114881283	C	T	c	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr7	142111197	142111198	chr7:142111198:A:G	rs115968300	A	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr7	142200277	142200278	chr7:142200278:G:A	rs4726497	G	A	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr7	142248554	142248555	chr7:142248555:A:T	rs10264758	A	T	A	Msx3.mouse_homeodomain_1	2	1	+	7.684078175034094	4.528650556821474	GCACTTGAGTAGTAATTG
chr7	142334976	142334977	chr7:142334977:C:A	rs3020835	C	A	C	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr7	142524323	142524324	chr7:142524324:T:C	rs1458325266	T	C	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr7	142798545	142798546	chr7:142798546:A:T	rs12531368	A	T	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr7	143203618	143203619	chr7:143203619:A:G	rs77381958	A	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr7	143203625	143203626	chr7:143203626:G:A	rs962675712	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	10.440406232674675	8.730175813690963	CTCATTAGAATCCCATTA
chr7	143580805	143580806	chr7:143580806:T:A	rs9640397	T	A	.	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr7	143789475	143789476	chr7:143789476:G:C	rs56231270	G	C	.	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr7	143850716	143850717	chr7:143850717:T:C	rs6972366	T	C	-	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	144676705	144676706	chr7:144676706:T:C	rs17170559	T	C	C	Msx3.mouse_homeodomain_1	0	1	-	10.93386972264317	12.042379277807914	ATAATTAAACACTCATTA
chr7	144676705	144676706	chr7:144676706:T:G	chr7:144676706:T:G	T	G	C	Msx3.mouse_homeodomain_1	0	1	-	10.93386972264317	11.675027767933305	ATAATTAAACACTCATTA
chr7	144676722	144676723	chr7:144676723:G:A	rs73161084	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr7	145157595	145157596	chr7:145157596:C:A	rs10255494	C	A	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr7	145705119	145705120	chr7:145705120:G:C	rs11771130	G	C	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr7	147498956	147498957	chr7:147498957:A:T	rs7778685	A	T	T	Msx3.mouse_homeodomain_1	14	1	+	11.062797928985226	6.73603757763567	GTAATAAAAAAAAAATTA
chr7	147508359	147508360	chr7:147508360:T:A	rs1544015	T	A	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	147570515	147570516	chr7:147570516:A:G	rs6962824	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	147658390	147658391	chr7:147658391:C:T	rs78291755	C	T	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	147722311	147722312	chr7:147722312:G:T	rs139666504	G	T	G	Msx3.mouse_homeodomain_1	0	1	+	7.612291869820793	6.421349615686002	GCACTTAAAATGTCATCA
chr7	147804236	147804237	chr7:147804237:T:C	rs77205394	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.470560684696416	3.8824664656732657	CCTATTAATTATCAATTT
chr7	147944945	147944946	chr7:147944946:T:C	rs2707581	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr7	148017617	148017618	chr7:148017618:A:G	rs6979577	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	8.266714100220717	2.1681684203515834	CCAATTGGCTACTACTTA
chr7	148017638	148017639	chr7:148017639:G:A	rs10952722	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr7	148149902	148149903	chr7:148149903:A:T	rs17170855	A	T	A	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr7	148205751	148205752	chr7:148205752:A:G	rs75314116	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr7	148205793	148205794	chr7:148205794:T:C	rs6944384	T	C	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr7	148211117	148211118	chr7:148211118:T:G	rs10952735	T	G	T	Msx3.mouse_homeodomain_1	4	1	+	12.63701403218808	6.979024780238379	CTAATTAAAAAGCAGTTA
chr7	148667752	148667753	chr7:148667753:T:G	rs111636812	T	G	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr7	148906873	148906874	chr7:148906874:C:T	rs1676906	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	7.196768133663274	5.751645470096791	GCACTTAATAAACACTTG
chr7	149284988	149284989	chr7:149284989:C:A	rs112616806	C	A	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr7	149625268	149625269	chr7:149625269:C:T	rs12666136	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr7	149703884	149703885	chr7:149703885:T:G	rs79229466	T	G	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr7	149820297	149820298	chr7:149820298:A:G	rs60683676	A	G	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr7	149871813	149871814	chr7:149871814:C:T	rs10952234	C	T	.	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr7	150417816	150417817	chr7:150417817:A:G	rs13235078	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	8.1513585413853	5.709281314453743	CCAATCAATGACAAATCA
chr7	150623322	150623323	chr7:150623323:C:T	rs78779408	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	6.086334038501353	8.14360821740755	CCAGTCAGCACGCGATTA
chr7	150685543	150685544	chr7:150685544:T:A	rs117179267	T	A	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr7	150751784	150751785	chr7:150751785:A:G	rs9969148	A	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr7	150780503	150780504	chr7:150780504:T:G	rs6464098	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	6.74774364002488	-0.15972159689912502	CCACTTAAGTGCTAGTTA
chr7	151352731	151352732	chr7:151352732:C:T	rs444648	C	T	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	151367218	151367219	chr7:151367219:A:G	rs367191	A	G	G	Msx3.mouse_homeodomain_1	16	1	-	8.778499432334712	5.65355027874086	ACTATCAAAATGAAATTA
chr7	151668313	151668314	chr7:151668314:T:C	rs1362235	T	C	-	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr7	151823844	151823845	chr7:151823845:A:C	rs7805942	A	C	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	151915750	151915751	chr7:151915751:A:G	rs10952331	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr7	151977661	151977662	chr7:151977662:C:T	rs7811095	C	T	t	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	154596966	154596967	chr7:154596967:C:T	rs6597419	C	T	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr7	154610924	154610925	chr7:154610925:A:G	rs28588717	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr7	154640534	154640535	chr7:154640535:T:A	rs11767658	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	9.126514738251721	3.0476013188938658	GCCATTGATGAGAAATTA
chr7	154640549	154640550	chr7:154640550:A:T	rs112978864	A	T	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr7	154759312	154759313	chr7:154759313:T:C	rs142893393	T	C	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr7	154871658	154871659	chr7:154871659:C:T	rs62472965	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	154917005	154917006	chr7:154917006:C:T	rs11771552	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr7	155189620	155189621	chr7:155189621:G:A	rs1465784	G	A	G	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr7	155379968	155379969	chr7:155379969:T:C	rs13234121	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr7	155805450	155805451	chr7:155805451:G:A	rs1233553	G	A	A	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr7	156027466	156027467	chr7:156027467:A:G	rs10255199	A	G	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr7	156397795	156397796	chr7:156397796:G:T	rs35659302	G	T	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr7	156906494	156906495	chr7:156906495:C:T	rs79628385	C	T	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr7	157027952	157027953	chr7:157027953:T:C	rs80284674	T	C	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	157503290	157503291	chr7:157503291:A:T	rs2302447	A	T	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr7	157575341	157575342	chr7:157575342:C:G	rs79117925	C	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr7	157787220	157787221	chr7:157787221:A:G	rs111779299	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr7	158155107	158155108	chr7:158155108:C:G	rs10249575	C	G	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr7	158613736	158613737	chr7:158613737:A:G	rs9691632	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.022702801807955	3.053271825439079	CCAATTATATACCAGTGA
chr7	158634033	158634034	chr7:158634034:A:G	rs12533904	A	G	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr7	158847052	158847053	chr7:158847053:G:A	rs842680	G	A	g	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr7	158976609	158976610	chr7:158976610:C:T	rs6956589	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr7	158976652	158976653	chr7:158976653:A:G	rs116017509	A	G	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr7	159068828	159068829	chr7:159068829:T:C	rs73730135	T	C	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr7	159094582	159094583	chr7:159094583:A:G	rs78766442	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr7	159094601	159094602	chr7:159094602:T:C	rs73169244	T	C	C	Msx3.mouse_homeodomain_1	14	1	-	9.048829582726608	4.460735363703456	AAAATCACACTGCAATTA
chr8	376947	376948	chr8:376948:G:C	rs73523859	G	C	.	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr8	923674	923675	chr8:923675:G:A	rs74550761	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr8	1164973	1164974	chr8:1164974:A:G	rs62487543	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	9.686709014914921	5.09861479589177	CAAATTATCTTCCCATTA
chr8	1214909	1214910	chr8:1214910:T:G	rs11996586	T	G	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr8	1214916	1214917	chr8:1214917:C:G	rs34086587	C	G	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr8	1372779	1372780	chr8:1372780:A:G	rs13249719	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.630902444446122	1.5323567645769907	TCTATTGCAGTACAATTA
chr8	1479473	1479474	chr8:1479474:A:G	rs75043979	A	G	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr8	1508591	1508592	chr8:1508592:G:A	rs73672754	G	A	A	Msx3.mouse_homeodomain_1	17	1	+	6.678225138305787	9.246384735488988	CCATTCAAACAGCAATTG
chr8	1701771	1701772	chr8:1701772:T:A	rs6992443	T	A	T	Msx3.mouse_homeodomain_1	6	1	-	9.140314787686973	5.548032580574452	CTAATTATCACACAATTT
chr8	1701793	1701794	chr8:1701794:G:A	rs7005715	G	A	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	1739212	1739213	chr8:1739213:A:G	rs188423494	A	G	a	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	2026825	2026826	chr8:2026826:A:G	rs4876253	A	G	a	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr8	2075327	2075328	chr8:2075328:T:A	rs17751495	T	A	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr8	2967383	2967384	chr8:2967384:G:A	rs7829455	G	A	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr8	3062740	3062741	chr8:3062741:G:C	rs17317705	G	C	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr8	3195455	3195456	chr8:3195456:G:A	rs11775083	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	3269780	3269781	chr8:3269781:A:G	rs13266144	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	3635137	3635138	chr8:3635138:C:T	rs2406984	C	T	T	Msx3.mouse_homeodomain_1	9	1	-	5.94806013968062	6.888604132066766	GCACTCACCGTCCACTTA
chr8	3654075	3654076	chr8:3654076:C:T	rs58587540	C	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr8	4062359	4062360	chr8:4062360:G:C	rs1426282	G	C	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr8	4358739	4358740	chr8:4358740:G:C	rs10096474	G	C	G	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr8	4525906	4525907	chr8:4525907:G:T	rs34029111	G	T	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr8	4953487	4953488	chr8:4953488:A:C	rs13274629	A	C	c	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr8	5049579	5049580	chr8:5049580:G:C	rs118183530	G	C	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr8	5144473	5144474	chr8:5144474:C:T	rs4875449	C	T	T	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr8	5357304	5357305	chr8:5357305:G:T	rs10106459	G	T	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr8	5682088	5682089	chr8:5682089:T:G	rs9657417	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	8.309516607493741	1.4020513705697355	TTGATTAAGAAGAGATTA
chr8	5696575	5696576	chr8:5696576:C:A	rs11774958	C	A	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr8	5798687	5798688	chr8:5798688:C:G	rs7833375	C	G	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	6026373	6026374	chr8:6026374:A:T	rs2700751	A	T	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr8	6026391	6026392	chr8:6026392:A:C	rs2700752	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	9.94049451179292	4.866961735683592	GACATTAAAAACTGATTA
chr8	6344095	6344096	chr8:6344096:T:C	rs77607952	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr8	8224206	8224207	chr8:8224207:T:G	rs59397409	T	G	.	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	8601484	8601485	chr8:8601485:C:G	rs528217764	C	G	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	8752515	8752516	chr8:8752516:G:A	rs56007835	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	9.267160333066915	7.822037669500431	CTCATTAAAATACAATAA
chr8	8753637	8753638	chr8:8753638:T:C	rs149734540	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	8858231	8858232	chr8:8858232:T:C	rs71514514	T	C	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr8	8933069	8933070	chr8:8933070:G:A	rs56675832	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr8	8933088	8933089	chr8:8933089:A:G	rs150838327	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.664995602506476	4.695564626137596	ACAATTATGAGACATTTA
chr8	9239901	9239902	chr8:9239902:C:G	rs17656299	C	G	C	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	9292101	9292102	chr8:9292102:T:C	rs330089	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.354753089399842	2.766658870376692	CCAATTGCATGGACATTA
chr8	9513048	9513049	chr8:9513049:T:C	rs10100760	T	C	T	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr8	10253783	10253784	chr8:10253784:G:A	rs6983870	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr8	10279641	10279642	chr8:10279642:C:A	rs2952255	C	A	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	10302307	10302308	chr8:10302308:C:T	rs13269741	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr8	10353282	10353283	chr8:10353283:A:G	rs7828605	A	G	A	Msx3.mouse_homeodomain_1	7	1	+	7.574495252861278	6.464679715537685	CCAATAAAAAGCCACTCA
chr8	10712556	10712557	chr8:10712557:C:T	rs34165485	C	T	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr8	11276595	11276596	chr8:11276596:T:C	rs4840554	T	C	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	11417954	11417955	chr8:11417955:T:C	rs78202955	T	C	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr8	11444971	11444972	chr8:11444972:T:G	rs9792375	T	G	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	11671688	11671689	chr8:11671689:A:G	rs11777330	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr8	11679128	11679129	chr8:11679129:G:T	rs4840575	G	T	G	Msx3.mouse_homeodomain_1	17	1	+	8.344963090435357	7.542336491739762	GCCATCAATCTCCAATTG
chr8	11679143	11679144	chr8:11679144:G:A	rs189737931	G	A	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr8	11856342	11856343	chr8:11856343:A:G	rs17154027	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	10.124198734787441	5.536104515764291	CCATTAAAAAAGCAATTA
chr8	12559673	12559674	chr8:12559674:G:A	rs13265229	G	A	.	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	12765403	12765404	chr8:12765404:A:G	rs55931840	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	8.147029191763657	8.994872062644344	CTCATTATACAGTCATTA
chr8	12838118	12838119	chr8:12838119:A:C	rs113261342	A	C	A	Msx3.mouse_homeodomain_1	9	1	-	10.297954906444037	9.771552185930972	GTAATTGCATGCCGATTA
chr8	13117785	13117786	chr8:13117786:C:T	rs4831393	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr8	13239478	13239479	chr8:13239479:G:A	rs61339591	G	A	g	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr8	13319297	13319298	chr8:13319298:G:C	rs1614465	G	C	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr8	13319301	13319302	chr8:13319302:C:A	rs76875829	C	A	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr8	13403454	13403455	chr8:13403455:C:G	rs1481675	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr8	13657618	13657619	chr8:13657619:A:G	rs10094124	A	G	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	13951072	13951073	chr8:13951073:T:C	rs12674624	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr8	14227960	14227961	chr8:14227961:C:G	rs12675362	C	G	C	Msx3.mouse_homeodomain_1	8	1	+	7.86173736088024	7.774754852667585	CCCATGACCAGGCAATTA
chr8	14227979	14227980	chr8:14227980:T:C	rs35482427	T	C	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr8	14227980	14227981	chr8:14227981:G:A	rs34899486	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr8	14331523	14331524	chr8:14331524:C:T	chr8:14331524:C:T	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	14781128	14781129	chr8:14781129:G:C	rs2197108	G	C	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	14894393	14894394	chr8:14894394:T:C	rs115758992	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	9.469225181518375	5.4997942051495	ACCATTGACATTCAATTA
chr8	14901251	14901252	chr8:14901252:A:G	rs78990826	A	G	A	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr8	15257476	15257477	chr8:15257477:T:G	rs7006031	T	G	t	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr8	15714081	15714082	chr8:15714082:T:C	rs1421245	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	16120676	16120677	chr8:16120677:C:T	rs12678682	C	T	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr8	16120679	16120680	chr8:16120680:C:G	rs1993978	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr8	16566529	16566530	chr8:16566530:G:C	rs1526428	G	C	G	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	16611255	16611256	chr8:16611256:G:A	rs12674905	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	16659933	16659934	chr8:16659934:T:C	rs77369554	T	C	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr8	16659967	16659968	chr8:16659968:G:A	rs17123389	G	A	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	16826696	16826697	chr8:16826697:G:A	rs568482	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	7.348559911958154	8.355109244803362	TCACTTAAGGAGCAATGA
chr8	16833912	16833913	chr8:16833913:A:C	rs611863	A	C	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr8	16833914	16833915	chr8:16833915:A:G	rs611864	A	G	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr8	16906935	16906936	chr8:16906936:T:C	rs564072627	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	16909064	16909065	chr8:16909065:C:T	rs11203813	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr8	16914327	16914328	chr8:16914328:C:T	rs1851710	C	T	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr8	16972583	16972584	chr8:16972584:A:G	rs1626912	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	17152396	17152397	chr8:17152397:G:A	rs927850878	G	A	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr8	17363491	17363492	chr8:17363492:C:T	rs8180986	C	T	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr8	17474955	17474956	chr8:17474956:G:T	rs10448129	G	T	G	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr8	17585149	17585150	chr8:17585150:C:T	rs56383452	C	T	C	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr8	17585161	17585162	chr8:17585162:C:G	rs73198126	C	G	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr8	17617922	17617923	chr8:17617923:C:G	rs114355745	C	G	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr8	17618489	17618490	chr8:17618490:T:C	rs2283105	T	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	17621556	17621557	chr8:17621557:A:G	rs2237833	A	G	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr8	17697853	17697854	chr8:17697854:G:A	rs421969	G	A	G	Msx3.mouse_homeodomain_1	0	1	-	9.268240058248075	8.444649313987895	CTAATTTTTTTCTAATTA
chr8	17699569	17699570	chr8:17699570:C:G	rs7013876	C	G	A	Msx3.mouse_homeodomain_1	8	1	+	8.452382083263554	8.365399575050901	GAAATTACCATCTAATCA
chr8	17699579	17699580	chr8:17699580:T:C	rs6999554	T	C	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	17766277	17766278	chr8:17766278:G:T	rs144685294	G	T	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr8	17910174	17910175	chr8:17910175:T:A	rs10113677	T	A	T	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr8	18080289	18080290	chr8:18080290:C:T	chr8:18080290:C:T	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	11.090167430611366	11.420108383327463	TTAATTACTAAGCCATTA
chr8	18080308	18080309	chr8:18080309:C:G	rs35198466	C	G	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr8	18172188	18172189	chr8:18172189:G:A	rs34403329	G	A	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr8	18581355	18581356	chr8:18581356:A:G	rs2634444	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr8	18596195	18596196	chr8:18596196:T:A	rs76065480	T	A	T	Msx3.mouse_homeodomain_1	2	1	-	8.556009506475439	5.400581888262819	CAAATTATTGTCCAATTT
chr8	18602555	18602556	chr8:18602556:G:A	rs6983527	G	A	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr8	18733710	18733711	chr8:18733711:A:C	rs144499293	A	C	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr8	19016909	19016910	chr8:19016910:G:A	rs77845633	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr8	19016910	19016911	chr8:19016911:C:A	rs79236153	C	A	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	19033693	19033694	chr8:19033694:C:A	rs1506891	C	A	A	Msx3.mouse_homeodomain_1	6	1	+	9.323350627727518	13.568366434199678	GCCATTCATACCCAATTA
chr8	19033697	19033698	chr8:19033698:C:G	rs1506892	C	G	G	Msx3.mouse_homeodomain_1	10	1	+	9.323350627727518	9.784303280639875	GCCATTCATACCCAATTA
chr8	19128921	19128922	chr8:19128922:T:G	rs2659680	T	G	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr8	19170613	19170614	chr8:19170614:A:T	rs2672268	A	T	a	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr8	19177114	19177115	chr8:19177115:A:G	rs872592	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	19214400	19214401	chr8:19214401:G:A	rs1193324	G	A	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr8	19433143	19433144	chr8:19433144:C:T	rs11991105	C	T	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr8	19453984	19453985	chr8:19453985:T:G	rs4379462	T	G	T	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr8	19683400	19683401	chr8:19683401:A:C	rs7843349	A	C	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr8	19691455	19691456	chr8:19691456:A:C	rs1492643	A	C	A	Msx3.mouse_homeodomain_1	3	1	+	8.169857548641247	5.2896831841083465	CCAATTGCCTTCTCATTA
chr8	19796529	19796530	chr8:19796530:C:T	rs6996994	C	T	T	Msx3.mouse_homeodomain_1	14	1	+	8.381535211463312	7.615753898367944	GAAATTAGATGACACTTA
chr8	20082546	20082547	chr8:20082547:C:T	rs13273454	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr8	20114856	20114857	chr8:20114857:C:T	rs1039122	C	T	T	Msx3.mouse_homeodomain_1	0	1	+	8.408398326192797	7.584807581932621	CCAATCATAAATCAATTC
chr8	20133911	20133912	chr8:20133912:A:G	rs116051622	A	G	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr8	20137897	20137898	chr8:20137898:A:G	rs2047360	A	G	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr8	20583916	20583917	chr8:20583917:A:G	rs62499390	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr8	20583936	20583937	chr8:20583937:A:G	rs75357232	A	G	A	Msx3.mouse_homeodomain_1	2	1	-	7.1095269897701145	7.882367166512009	GCTATAAACTCCCAATTG
chr8	20774234	20774235	chr8:20774235:C:T	rs2597416	C	T	T	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	20782966	20782967	chr8:20782967:A:G	rs10089927	A	G	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr8	21214890	21214891	chr8:21214891:G:T	rs2613696	G	T	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr8	21695416	21695417	chr8:21695417:C:T	rs74788884	C	T	c	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr8	22442984	22442985	chr8:22442985:T:C	rs7001812	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr8	22485886	22485887	chr8:22485887:T:G	rs11783838	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	6.891858511295072	2.305001930168564	GCCATCACTCACCAATCA
chr8	22591265	22591266	chr8:22591266:A:G	rs73672776	A	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr8	22703084	22703085	chr8:22703085:A:G	rs12541654	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	8.629600690990777	2.5310550111216457	ATCATTACCACTCAATTA
chr8	22808570	22808571	chr8:22808571:C:A	rs28416455	C	A	C	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr8	22942410	22942411	chr8:22942411:T:C	rs2430780	T	C	c	Msx3.mouse_homeodomain_1	6	1	-	7.159498760416766	4.717421533485207	CCCATTATGTTGGGATTA
chr8	23098317	23098318	chr8:23098318:T:C	rs55869971	T	C	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr8	23108686	23108687	chr8:23108687:C:A	rs11779793	C	A	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr8	23246144	23246145	chr8:23246145:A:T	rs12542630	A	T	A	Msx3.mouse_homeodomain_1	10	1	-	11.446697669272556	11.940269193247676	CAAATTAAGATCAAATTA
chr8	23302641	23302642	chr8:23302642:C:T	rs17760913	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr8	23302673	23302674	chr8:23302674:G:A	rs11135722	G	A	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr8	23708364	23708365	chr8:23708365:T:G	rs7834389	T	G	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	23721823	23721824	chr8:23721824:A:G	rs10091541	A	G	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	24018967	24018968	chr8:24018968:A:G	rs10503739	A	G	A	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr8	24056408	24056409	chr8:24056409:G:A	rs74434323	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	24296935	24296936	chr8:24296936:G:A	rs62502710	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr8	24395158	24395159	chr8:24395159:A:G	rs138142409	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	10.126409712021992	7.684332485090436	CCACTAACAGACCAATTA
chr8	24951702	24951703	chr8:24951703:G:A	rs3761	G	A	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	25171155	25171156	chr8:25171156:T:C	rs11985184	T	C	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr8	25193104	25193105	chr8:25193105:A:G	rs2941602	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.931834564197995	4.962403587829117	GTAATTATGTTCTATTTA
chr8	25197209	25197210	chr8:25197210:G:A	rs2320887	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	8.867889386085121	8.020046515204438	ACAATAAAACCCCCATTA
chr8	25252411	25252412	chr8:25252412:G:T	rs114338457	G	T	G	Msx3.mouse_homeodomain_1	1	1	-	11.058346530891196	8.358057153950732	ACAATAAACTTTCAATTA
chr8	25298737	25298738	chr8:25298738:A:T	rs61205519	A	T	A	Msx3.mouse_homeodomain_1	14	1	+	10.146062270388198	5.819301919038642	CTAATTAAAAAAAAATTT
chr8	25585307	25585308	chr8:25585308:G:A	rs66487916	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	6.501730097610287	7.578321268546762	CAAATTGAGCGCCAATCA
chr8	26065394	26065395	chr8:26065395:A:C	rs7836754	A	C	C	Msx3.mouse_homeodomain_1	7	1	-	6.848211277743418	6.798341334408483	GCAATGTTGTGGCAATTA
chr8	26461531	26461532	chr8:26461532:C:T	rs12674518	C	T	c	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr8	26572077	26572078	chr8:26572078:C:G	rs78242671	C	G	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr8	26867728	26867729	chr8:26867729:C:A	rs539571	C	A	C	Msx3.mouse_homeodomain_1	0	1	+	8.201336518609988	7.460178473319856	CTGATTGTAATGAAATTA
chr8	26931432	26931433	chr8:26931433:A:T	rs7007414	A	T	T	Msx3.mouse_homeodomain_1	17	1	+	13.845853368416016	10.475067172537218	GCAATTAAGAGGAAATTA
chr8	26931443	26931444	chr8:26931444:G:A	rs6986602	G	A	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr8	27274418	27274419	chr8:27274419:A:C	rs140103307	A	C	A	Msx3.mouse_homeodomain_1	2	1	+	12.170608463740358	9.788021022269632	TTAATTAACTCCTAATTA
chr8	27703380	27703381	chr8:27703381:A:G	rs522881	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.614890384155728	2.026796165132578	GCAATTTCCAACCCATCA
chr8	27855519	27855520	chr8:27855520:G:C	rs7833802	G	C	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr8	27855524	27855525	chr8:27855525:G:T	rs7833806	G	T	G	Msx3.mouse_homeodomain_1	13	1	-	9.432973012203917	12.317166068681296	ATAATCAAATACTCATTA
chr8	27928307	27928308	chr8:27928308:C:A	rs78257508	C	A	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr8	28033722	28033723	chr8:28033723:G:A	rs142548910	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr8	28324237	28324238	chr8:28324238:C:T	rs11779594	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	6.98456091960169	6.136718048721005	GCCCTTAAATCCCATTTA
chr8	28888030	28888031	chr8:28888031:A:G	rs143191804	A	G	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr8	29062848	29062849	chr8:29062849:T:G	rs116634247	T	G	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr8	29190292	29190293	chr8:29190293:A:C	rs4732666	A	C	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr8	29774322	29774323	chr8:29774323:T:C	rs7012048	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	29926481	29926482	chr8:29926482:C:T	rs79952190	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr8	30137269	30137270	chr8:30137270:A:G	rs188534729	A	G	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr8	30137273	30137274	chr8:30137274:G:A	rs74960438	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr8	30241771	30241772	chr8:30241772:T:C	rs184673324	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr8	30269937	30269938	chr8:30269938:T:G	rs2938207	T	G	T	Msx3.mouse_homeodomain_1	3	1	-	8.070069804780161	5.189895440247261	CTGATAAACACCTAATTA
chr8	30269942	30269943	chr8:30269943:C:G	rs2938206	C	G	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr8	30363683	30363684	chr8:30363684:T:A	rs150370326	T	A	T	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr8	31245524	31245525	chr8:31245525:G:A	rs368401949	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr8	31642690	31642691	chr8:31642691:C:A	rs1081064	C	A	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr8	31728419	31728420	chr8:31728420:C:T	rs7341649	C	T	C	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr8	31876130	31876131	chr8:31876131:T:G	rs10503895	T	G	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr8	32109136	32109137	chr8:32109137:T:G	rs12056821	T	G	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr8	32448438	32448439	chr8:32448439:G:A	rs10103930	G	A	A	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr8	33104645	33104646	chr8:33104646:T:A	rs7826941	T	A	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr8	33414170	33414171	chr8:33414171:G:A	rs10093785	G	A	G	Msx3.mouse_homeodomain_1	2	1	+	10.33788489834215	12.854753526279229	GCGATTAAAAGTCCATTA
chr8	33770823	33770824	chr8:33770824:G:C	rs16881213	G	C	C	Msx3.mouse_homeodomain_1	7	1	+	7.560258533301451	7.280187523920289	GCCCTTAGCAGGAAATTA
chr8	34393097	34393098	chr8:34393098:T:C	rs1373804	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	7.644612901974885	1.5460672221057512	TCACTTGAACTCCAATTG
chr8	34663763	34663764	chr8:34663764:A:G	rs12545278	A	G	G	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr8	35000164	35000165	chr8:35000165:C:G	rs4521752	C	G	C	Msx3.mouse_homeodomain_1	7	1	+	8.932804298413586	9.21287530779475	TTAATTACATGGCAGTTA
chr8	35120120	35120121	chr8:35120121:C:A	rs2218870	C	A	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr8	35468830	35468831	chr8:35468831:T:G	rs873893	T	G	T	Msx3.mouse_homeodomain_1	17	1	-	8.94725263331334	4.360396052186831	TTAATTAAAAAGTCATCA
chr8	35692738	35692739	chr8:35692739:T:A	rs893046	T	A	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr8	36086968	36086969	chr8:36086969:C:T	rs527986804	C	T	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr8	37154142	37154143	chr8:37154143:C:T	rs508635	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr8	37253263	37253264	chr8:37253264:G:A	rs151177809	G	A	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr8	37274776	37274777	chr8:37274777:T:C	rs422467	T	C	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	37275027	37275028	chr8:37275028:G:A	rs391449	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	37452525	37452526	chr8:37452526:A:G	rs78932743	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr8	37477929	37477930	chr8:37477930:T:C	rs7387913	T	C	T	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	37675465	37675466	chr8:37675466:A:G	rs11782259	A	G	A	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr8	38571853	38571854	chr8:38571854:C:A	rs17582026	C	A	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	38623010	38623011	chr8:38623011:T:C	rs99733	T	C	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr8	38691100	38691101	chr8:38691101:C:T	rs4733942	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	38773165	38773166	chr8:38773166:T:A	rs7010939	T	A	A	Msx3.mouse_homeodomain_1	4	1	+	10.327081824073826	3.422060278337743	TTAATTATACAAAAATTA
chr8	40104640	40104641	chr8:40104641:C:G	rs72633044	C	G	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr8	40200918	40200919	chr8:40200919:A:T	rs6474231	A	T	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr8	40200953	40200954	chr8:40200954:A:T	rs6474232	A	T	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	40211116	40211117	chr8:40211117:G:T	rs10105368	G	T	T	Msx3.mouse_homeodomain_1	12	1	-	9.260402894453609	6.749094134684785	GTGATTAAACATCCATTA
chr8	40318155	40318156	chr8:40318156:T:G	chr8:40318156:T:G	T	G	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr8	40336209	40336210	chr8:40336210:A:G	rs74586447	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr8	40502134	40502135	chr8:40502135:A:G	rs59743358	A	G	A	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr8	40734305	40734306	chr8:40734306:A:G	rs4554450	A	G	G	Msx3.mouse_homeodomain_1	0	1	+	8.276811106644729	9.385320661809473	ATTATTAAATGGCACTTA
chr8	41315028	41315029	chr8:41315029:A:G	rs73676352	A	G	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr8	41458401	41458402	chr8:41458402:T:G	rs12543644	T	G	T	Msx3.mouse_homeodomain_1	1	1	+	10.932185650086069	8.515679663938439	CTCATTATATGCTAATTA
chr8	41474263	41474264	chr8:41474264:G:T	rs72633863	G	T	G	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr8	41479303	41479304	chr8:41479304:A:G	rs60099767	A	G	G	Msx3.mouse_homeodomain_1	6	1	+	6.955483726817477	4.513406499885921	TCCCTCACCTACCAATTA
chr8	41821539	41821540	chr8:41821540:G:A	rs111827109	G	A	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	41958870	41958871	chr8:41958871:T:C	rs117669248	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr8	42006098	42006099	chr8:42006099:A:G	rs117810811	A	G	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr8	42256966	42256967	chr8:42256967:T:C	rs6474383	T	C	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr8	42644654	42644655	chr8:42644655:T:A	rs78966247	T	A	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	43254426	43254427	chr8:43254427:A:G	rs1021045	A	G	.	Msx3.mouse_homeodomain_1	10	1	+	7.767548567391601	6.6909573964551265	TCATTTAAAGACGAATTA
chr8	47261498	47261499	chr8:47261499:G:A	rs28617698	G	A	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr8	47592029	47592030	chr8:47592030:T:C	rs547910667	T	C	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	47619329	47619330	chr8:47619330:A:C	rs147848588	A	C	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr8	48528974	48528975	chr8:48528975:G:A	rs2891639	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	7.712757673181959	8.789348844118432	CCAATCTAATGGCCATTA
chr8	51198929	51198930	chr8:51198930:A:G	rs58475991	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	10.603398999648835	3.69593376272483	GTAATTACACTCCAATAA
chr8	51240422	51240423	chr8:51240423:C:T	rs2893637	C	T	C	Msx3.mouse_homeodomain_1	12	1	-	10.54845214734107	11.5365264061884	TTAATTAACGTGGAATTA
chr8	51778063	51778064	chr8:51778064:T:C	rs60153173	T	C	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	51844532	51844533	chr8:51844533:G:A	rs10504130	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr8	52460887	52460888	chr8:52460888:C:T	rs2582639	C	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	52631484	52631485	chr8:52631485:G:A	rs118111473	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	9.131999571414	10.138548904259206	GGAATTTAGAAGTAATTA
chr8	54576606	54576607	chr8:54576607:T:C	rs7820345	T	C	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr8	54576617	54576618	chr8:54576618:C:T	rs7833405	C	T	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr8	55228638	55228639	chr8:55228639:A:G	rs13249517	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	55789423	55789424	chr8:55789424:G:A	rs896126	G	A	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr8	55906191	55906192	chr8:55906192:G:A	rs41429544	G	A	G	Msx3.mouse_homeodomain_1	1	1	-	7.062516943076649	6.214674072195964	CCGATTAAATCCTGATCA
chr8	55926940	55926941	chr8:55926941:C:T	rs7341608	C	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	57057888	57057889	chr8:57057889:G:C	rs7819442	G	C	.	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr8	57736431	57736432	chr8:57736432:G:T	rs116758246	G	T	G	Msx3.mouse_homeodomain_1	9	1	-	11.047776295447392	12.354006599391724	ACAATTACACGGAAATTA
chr8	57751604	57751605	chr8:57751605:C:T	rs12542320	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr8	58128776	58128777	chr8:58128777:A:G	rs72662411	A	G	A	Msx3.mouse_homeodomain_1	17	1	-	8.087590424313907	6.871520039066196	CTACTCAAAATGCAATTT
chr8	58355775	58355776	chr8:58355776:G:A	rs10216963	G	A	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr8	58523661	58523662	chr8:58523662:C:G	rs10110065	C	G	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr8	58556091	58556092	chr8:58556092:A:T	rs7825996	A	T	a	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr8	58620147	58620148	chr8:58620148:G:T	rs4598239	G	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr8	58800033	58800034	chr8:58800034:T:C	rs10957070	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	58830618	58830619	chr8:58830619:T:C	rs10099884	T	C	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr8	58840766	58840767	chr8:58840767:T:G	rs7464175	T	G	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr8	59278771	59278772	chr8:59278772:A:G	rs12674861	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr8	59373284	59373285	chr8:59373285:T:C	rs57833860	T	C	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr8	59625613	59625614	chr8:59625614:G:T	rs80194225	G	T	G	Msx3.mouse_homeodomain_1	11	1	+	7.681903212768121	6.057138334494673	CCAATAAAATGGCAAATA
chr8	59968098	59968099	chr8:59968099:A:C	rs601224	A	C	A	Msx3.mouse_homeodomain_1	12	1	+	11.462640768007216	13.973949527776039	CCAATTAATATGAAATTG
chr8	60238323	60238324	chr8:60238324:C:G	rs56227154	C	G	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr8	60713972	60713973	chr8:60713973:A:G	rs7011972	A	G	g	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr8	60923436	60923437	chr8:60923437:G:T	rs79380534	G	T	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	60935366	60935367	chr8:60935367:G:A	rs72652563	G	A	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr8	61207759	61207760	chr8:61207760:G:T	rs11781240	G	T	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr8	61563666	61563667	chr8:61563667:G:A	rs10096503	G	A	G	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr8	61563675	61563676	chr8:61563676:T:C	rs77018489	T	C	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr8	62192574	62192575	chr8:62192575:C:A	rs1601056	C	A	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr8	62598436	62598437	chr8:62598437:T:A	rs7844749	T	A	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr8	62826763	62826764	chr8:62826764:T:G	rs116399850	T	G	T	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr8	63117342	63117343	chr8:63117343:C:T	rs2117695	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr8	64491004	64491005	chr8:64491005:A:G	rs10103906	A	G	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr8	64997918	64997919	chr8:64997919:G:A	rs1962030	G	A	A	Msx3.mouse_homeodomain_1	11	1	+	8.552408439257722	7.355457414082308	GCAATTGAAAAGCACTAA
chr8	65191689	65191690	chr8:65191690:G:A	rs34994298	G	A	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr8	65214618	65214619	chr8:65214619:A:G	rs4404953	A	G	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr8	65489417	65489418	chr8:65489418:C:T	rs76210436	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	9.604557264531834	8.756714393651148	CCGATTAAAAATCATTTA
chr8	65752587	65752588	chr8:65752588:T:C	rs78030240	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr8	65933595	65933596	chr8:65933596:G:A	rs906870030	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	66005759	66005760	chr8:66005760:T:C	rs2357570	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	66535176	66535177	chr8:66535177:A:G	rs17323074	A	G	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr8	66535182	66535183	chr8:66535183:A:G	rs139078638	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.233132317048492	1.3256670801244879	ACAATTTAGGGCCAATTG
chr8	66536043	66536044	chr8:66536044:G:A	rs533181661	G	A	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr8	67061280	67061281	chr8:67061281:G:A	rs74713534	G	A	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr8	67978715	67978716	chr8:67978716:T:C	rs34031650	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.338067616631378	3.749973397608228	GCAATCATAAAACCATTG
chr8	67995705	67995706	chr8:67995706:C:T	rs12335158	C	T	C	Msx3.mouse_homeodomain_1	8	1	-	7.8246628904196855	8.831212223264895	CAAATTACGTTCTCATTA
chr8	68980855	68980856	chr8:68980856:G:A	rs16935327	G	A	G	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr8	69178475	69178476	chr8:69178476:T:C	rs150570764	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr8	69185046	69185047	chr8:69185047:C:T	rs77289866	C	T	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	69275354	69275355	chr8:69275355:A:C	rs169514	A	C	A	Msx3.mouse_homeodomain_1	11	1	-	13.197017076124105	14.82178195439755	GCAATTAAAATTCAATCA
chr8	69827750	69827751	chr8:69827751:G:T	rs4738028	G	T	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr8	70534367	70534368	chr8:70534368:C:T	rs74425516	C	T	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	70899650	70899651	chr8:70899651:C:A	rs13267098	C	A	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr8	70908012	70908013	chr8:70908013:C:T	rs17689636	C	T	C	Msx3.mouse_homeodomain_1	1	1	-	8.589388123239644	9.153447603327493	CGAATTAAGAGTAAATTA
chr8	71056521	71056522	chr8:71056522:T:C	rs62506029	T	C	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr8	71667306	71667307	chr8:71667307:A:G	rs62518633	A	G	A	Msx3.mouse_homeodomain_1	6	1	+	7.208436905008743	4.766359678077187	CCCCTTACCATCCCATTA
chr8	72016312	72016313	chr8:72016313:T:G	rs35140759	T	G	T	Msx3.mouse_homeodomain_1	4	1	+	10.932185650086069	5.274196398136369	CTCATTATATGCTAATTA
chr8	72966076	72966077	chr8:72966077:T:C	rs3894367	T	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr8	73203996	73203997	chr8:73203997:A:G	rs2546240	A	G	G	Msx3.mouse_homeodomain_1	14	1	+	11.428934137977606	6.8408399189544555	TTAATTGGGTAGCAATTA
chr8	73417938	73417939	chr8:73417939:A:G	rs13254848	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	73484947	73484948	chr8:73484948:A:G	rs16938681	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	8.850256931452325	2.751711251583194	AAAATTGTCAACTAATTA
chr8	73593431	73593432	chr8:73593432:G:A	rs931775	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	8.24040991737202	10.297684096278218	GCACTTAAAGAACGATCA
chr8	73620913	73620914	chr8:73620914:C:A	rs7000169	C	A	C	Msx3.mouse_homeodomain_1	7	1	-	8.65415603406479	8.704025977399724	TCAATCTGGATGCAATTA
chr8	73620914	73620915	chr8:73620915:A:G	rs7000029	A	G	A	Msx3.mouse_homeodomain_1	6	1	-	8.65415603406479	8.001422434705148	TCAATCTGGATGCAATTA
chr8	73718063	73718064	chr8:73718064:C:T	rs7814285	C	T	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr8	73912150	73912151	chr8:73912151:A:C	rs7842194	A	C	A	Msx3.mouse_homeodomain_1	6	1	+	8.807499170233008	4.562483363760849	ACACTTAAGAGGCACTTA
chr8	73917481	73917482	chr8:73917482:G:A	rs6472810	G	A	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr8	74796828	74796829	chr8:74796829:G:A	rs13280639	G	A	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr8	75381597	75381598	chr8:75381598:C:G	rs6984365	C	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr8	75538210	75538211	chr8:75538211:A:G	rs57525159	A	G	A	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr8	75662341	75662342	chr8:75662342:A:G	rs16939129	A	G	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr8	75667774	75667775	chr8:75667775:A:C	rs7008656	A	C	A	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr8	75749868	75749869	chr8:75749869:C:A	rs117918628	C	A	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr8	75952084	75952085	chr8:75952085:A:C	rs16939205	A	C	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	76706704	76706705	chr8:76706705:G:A	rs79010789	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr8	77122760	77122761	chr8:77122761:A:G	rs10100694	A	G	G	Msx3.mouse_homeodomain_1	8	1	-	8.485053321088785	8.602756969613782	ACAATAAATAACCAATGA
chr8	78615724	78615725	chr8:78615725:G:A	rs146514552	G	A	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr8	78749582	78749583	chr8:78749583:T:G	rs113749614	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	8.808275321307162	5.924082264829789	CCAATTACAGTTTAATTT
chr8	78780507	78780508	chr8:78780508:C:T	rs55839840	C	T	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	79100585	79100586	chr8:79100586:A:T	rs142055839	A	T	A	Msx3.mouse_homeodomain_1	13	1	+	10.539722251075922	6.357313788235957	ATCATTAACAAATAATTA
chr8	79321427	79321428	chr8:79321428:C:A	rs10957923	C	A	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	79539046	79539047	chr8:79539047:C:T	rs4400425	C	T	C	Msx3.mouse_homeodomain_1	10	1	-	8.670185627661114	9.746776798597592	ATAATTAAAGGCAAATTT
chr8	79800864	79800865	chr8:79800865:G:A	rs2305046	G	A	G	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr8	79819925	79819926	chr8:79819926:A:T	rs12544114	A	T	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr8	80107467	80107468	chr8:80107468:T:C	rs1074786	T	C	T	Msx3.mouse_homeodomain_1	0	1	-	11.133279431802489	12.241788986967233	ATAATTACAAGGCCATTA
chr8	80247593	80247594	chr8:80247594:G:A	chr8:80247594:G:A	G	A	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr8	80815399	80815400	chr8:80815400:A:C	rs1387548	A	C	C	Msx3.mouse_homeodomain_1	0	1	-	10.23874058640573	11.429682840540522	TCAATTACAATTTGATTA
chr8	80974550	80974551	chr8:80974551:C:T	rs73695052	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	81004739	81004740	chr8:81004740:A:G	rs920984	A	G	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr8	81021946	81021947	chr8:81021947:T:C	chr8:81021947:T:C	T	C	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr8	81106625	81106626	chr8:81106626:A:G	rs28683599	A	G	G	Msx3.mouse_homeodomain_1	15	1	-	9.425682908198603	2.5182176712745963	TGAATTATAAAGGAATTA
chr8	81127382	81127383	chr8:81127383:T:C	rs16908663	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr8	81141192	81141193	chr8:81141193:G:T	rs115634126	G	T	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr8	81483682	81483683	chr8:81483683:C:T	rs190623800	C	T	C	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr8	81720077	81720078	chr8:81720078:G:T	rs57294500	G	T	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr8	81870826	81870827	chr8:81870827:A:C	rs7846525	A	C	A	Msx3.mouse_homeodomain_1	5	1	-	8.732315057615985	4.28973328014882	GCCATTATAATGTATTTA
chr8	82417794	82417795	chr8:82417795:C:T	rs7004720	C	T	c	Msx3.mouse_homeodomain_1	1	1	+	8.459023197680139	7.611180326799455	TCAATCAACTTGTAATCA
chr8	82417807	82417808	chr8:82417808:A:G	rs183635120	A	G	a	Msx3.mouse_homeodomain_1	14	1	+	8.459023197680139	3.870928978656989	TCAATCAACTTGTAATCA
chr8	82838966	82838967	chr8:82838967:T:C	rs67963454	T	C	T	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr8	83132423	83132424	chr8:83132424:G:C	rs62515262	G	C	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr8	83299331	83299332	chr8:83299332:A:G	rs6985259	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	83535200	83535201	chr8:83535201:T:C	rs1552546	T	C	C	Msx3.mouse_homeodomain_1	6	1	-	8.10808460576509	5.66600737883353	GTCATAACTATCTAATTA
chr8	84247595	84247596	chr8:84247596:G:A	rs76329760	G	A	G	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr8	84274742	84274743	chr8:84274743:T:G	rs16912630	T	G	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	84449107	84449108	chr8:84449108:T:C	rs711008	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	7.495289068867971	2.9071948498448212	GAGATCACTTTGCAATTA
chr8	84806458	84806459	chr8:84806459:C:A	rs111652921	C	A	C	Msx3.mouse_homeodomain_1	11	1	-	7.532660985067478	5.907896106794032	GCAATAAAAAAGGAATTC
chr8	85032278	85032279	chr8:85032279:G:A	rs143174367	G	A	g	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr8	85048643	85048644	chr8:85048644:G:A	rs1917255	G	A	g	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr8	85937713	85937714	chr8:85937714:T:C	rs111439547	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	10.021150905447687	6.896201751853835	CCAATTATCAAGAACTTA
chr8	85993818	85993819	chr8:85993819:T:C	rs185901	T	C	T	Msx3.mouse_homeodomain_1	10	1	+	9.183932272025379	8.139959972151663	CCCATTAAAATATAATTT
chr8	86007574	86007575	chr8:86007575:T:A	rs1483769	T	A	A	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr8	86012059	86012060	chr8:86012060:G:A	rs1483768	G	A	A	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr8	86320315	86320316	chr8:86320316:C:T	rs2953516	C	T	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr8	86320322	86320323	chr8:86320323:C:G	rs2976178	C	G	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr8	86338205	86338206	chr8:86338206:C:T	rs73262927	C	T	T	Msx3.mouse_homeodomain_1	10	1	+	6.408843602799249	7.452815902672964	GCAGTCAAGACGCAATCA
chr8	86338692	86338693	chr8:86338693:T:C	rs7824469	T	C	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr8	86338720	86338721	chr8:86338721:A:C	rs7820234	A	C	A	Msx3.mouse_homeodomain_1	13	1	+	6.801322246798997	3.9171291903216203	GCAATCATGATGCACTCA
chr8	86701450	86701451	chr8:86701451:G:A	rs189281836	G	A	G	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr8	87136292	87136293	chr8:87136293:T:A	rs751633656	T	A	t	Msx3.mouse_homeodomain_1	14	1	-	9.56889311144192	5.242132760092363	GGAATTAAATTATGATTA
chr8	87590330	87590331	chr8:87590331:C:A	rs10808386	C	A	A	Msx3.mouse_homeodomain_1	11	1	+	7.723184912432997	6.4407683465473236	CCTATAAAGGACAAATTA
chr8	88276830	88276831	chr8:88276831:G:A	rs13249155	G	A	A	Msx3.mouse_homeodomain_1	13	1	+	8.586986174512436	10.64426035341863	TTAATAAAATGGTGATTA
chr8	88679270	88679271	chr8:88679271:A:G	rs4133095	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	7.658159488192612	1.5596138083234794	GCAATTGGTTCCCATTTA
chr8	88843615	88843616	chr8:88843616:T:G	rs2454334	T	G	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr8	89949283	89949284	chr8:89949284:T:C	rs10109454	T	C	C	Msx3.mouse_homeodomain_1	3	1	-	10.244358115520946	6.27492713915207	GCAATTAATATCCTATTG
chr8	89983991	89983992	chr8:89983992:C:A	rs114266129	C	A	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr8	90311339	90311340	chr8:90311340:T:C	rs7845926	T	C	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr8	91747122	91747123	chr8:91747123:A:G	rs773058248	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr8	91747158	91747159	chr8:91747159:A:G	rs73313713	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr8	91953180	91953181	chr8:91953181:C:T	rs2218367	C	T	C	Msx3.mouse_homeodomain_1	13	1	-	8.212949552990796	10.270223731896994	CCAATTACTTGGCGATAA
chr8	92014145	92014146	chr8:92014146:A:G	rs7827887	A	G	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr8	92182190	92182191	chr8:92182191:A:T	rs77402509	A	T	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr8	92187227	92187228	chr8:92187228:A:G	rs7839607	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr8	92551782	92551783	chr8:92551783:G:A	rs550337861	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr8	92797671	92797672	chr8:92797672:T:A	rs753778840	T	A	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	93732584	93732585	chr8:93732585:C:T	rs10504930	C	T	C	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr8	93886148	93886149	chr8:93886149:C:T	rs73692910	C	T	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	93954674	93954675	chr8:93954675:A:T	rs115418959	A	T	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	94075567	94075568	chr8:94075568:G:A	rs2978157	G	A	A	Msx3.mouse_homeodomain_1	14	1	-	10.78733271028393	10.021551397188563	CAAATTAGAAACCACTTA
chr8	94162306	94162307	chr8:94162307:C:T	rs56347019	C	T	t	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr8	94206325	94206326	chr8:94206326:C:T	rs9642922	C	T	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr8	94206350	94206351	chr8:94206351:C:T	rs971398	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	7.642759427368744	7.5250557788437495	ATAATCAACGAGCAGTTA
chr8	94261787	94261788	chr8:94261788:T:C	rs2445715	T	C	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	94383579	94383580	chr8:94383580:A:G	rs2470746	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	8.081316438910779	8.929159309791466	CTAATAATAGAACAATCA
chr8	94438022	94438023	chr8:94438023:T:C	rs3136403	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr8	94438060	94438061	chr8:94438061:T:C	rs3019281	T	C	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr8	94928571	94928572	chr8:94928572:A:G	rs2459965	A	G	A	Msx3.mouse_homeodomain_1	11	1	+	7.5331979654100385	8.730148990585448	CTAATTAGACAACAAATA
chr8	94960590	94960591	chr8:94960591:T:A	rs13281709	T	A	A	Msx3.mouse_homeodomain_1	3	1	-	10.319227048917405	5.191876708769312	CCAATTGGAATAAAATTA
chr8	95071695	95071696	chr8:95071696:C:T	rs2678825	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	7.744277446644409	6.971437269902516	CTCATTAGGTAACAATTT
chr8	95100172	95100173	chr8:95100173:T:C	rs11776488	T	C	C	Msx3.mouse_homeodomain_1	8	1	+	7.2517881086442815	7.3694917571692775	GGAATAAATGAGCAATCA
chr8	95451810	95451811	chr8:95451811:A:C	rs6987245	A	C	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	95471918	95471919	chr8:95471919:G:T	rs12545121	G	T	G	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr8	95482210	95482211	chr8:95482211:G:A	rs12680629	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.549714747162849	8.104592083596366	AAAATTAAAAAACAATAA
chr8	95641909	95641910	chr8:95641910:C:T	rs4289783	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	96224179	96224180	chr8:96224180:T:C	rs1416785239	T	C	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr8	96407306	96407307	chr8:96407307:A:G	rs17783045	A	G	G	Msx3.mouse_homeodomain_1	1	1	-	9.147836781040294	9.99567965192098	GTAATGAAATGGAAATTA
chr8	96559037	96559038	chr8:96559038:G:T	rs10464834	G	T	G	Msx3.mouse_homeodomain_1	11	1	-	10.98358191676494	9.701165350879268	AAAATTACTCACCAATTA
chr8	97695983	97695984	chr8:97695984:T:C	rs79899807	T	C	T	Msx3.mouse_homeodomain_1	13	1	-	7.871550529265115	5.814276350358919	GCAGTTTTGGAGCAATTA
chr8	97819348	97819349	chr8:97819349:G:A	rs62524114	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.976241316636761	8.531118653070278	GAAATCAAAAAGCAATTT
chr8	97834733	97834734	chr8:97834734:T:C	rs1872016	T	C	t	Msx3.mouse_homeodomain_1	17	1	-	10.275626338727953	7.70746674154475	ACAATAAGAAAGCAATCA
chr8	97834762	97834763	chr8:97834763:A:G	rs1872017	A	G	a	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr8	98045826	98045827	chr8:98045827:T:G	rs55698139	T	G	t	Msx3.mouse_homeodomain_1	4	1	+	10.407302448100854	4.7493131961511565	GAAATAAAAAAGAAATTA
chr8	98245162	98245163	chr8:98245163:C:T	rs12542996	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr8	99091055	99091056	chr8:99091056:A:T	rs6468661	A	T	T	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr8	99303777	99303778	chr8:99303778:T:C	chr8:99303778:T:C	T	C	t	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr8	100267069	100267070	chr8:100267070:C:G	rs7833867	C	G	G	Msx3.mouse_homeodomain_1	1	1	+	10.0619236458069	6.797574788778587	ACAATTTTGTAACAATTA
chr8	100481783	100481784	chr8:100481784:A:G	rs6997292	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr8	100527595	100527596	chr8:100527596:A:T	rs55796642	A	T	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	100649943	100649944	chr8:100649944:T:C	rs11785728	T	C	T	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr8	100656691	100656692	chr8:100656692:A:G	rs1693586	A	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr8	101295606	101295607	chr8:101295607:A:G	rs62518048	A	G	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	101446150	101446151	chr8:101446151:A:C	rs13282360	A	C	A	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr8	101659660	101659661	chr8:101659661:G:T	rs2186390	G	T	G	Msx3.mouse_homeodomain_1	0	1	-	8.228527958415611	7.487369913125481	CAAATTAAAAGGGAATTG
chr8	101819192	101819193	chr8:101819193:T:C	rs73275578	T	C	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	102034604	102034605	chr8:102034605:G:T	rs2032151	G	T	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	102101498	102101499	chr8:102101499:A:G	rs17416694	A	G	G	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr8	102587467	102587468	chr8:102587468:T:C	rs10505031	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.32038420306064	4.732289984037491	ACCATTAATCACCAATTT
chr8	103110454	103110455	chr8:103110455:G:A	rs964166	G	A	G	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr8	103269391	103269392	chr8:103269392:C:G	rs16870304	C	G	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr8	103765767	103765768	chr8:103765768:T:A	rs12544699	T	A	A	Msx3.mouse_homeodomain_1	4	1	+	9.454331275355248	2.5493097296191656	CAAATTACAGGGAAATTA
chr8	104163768	104163769	chr8:104163769:C:G	rs2441874	C	G	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr8	104163844	104163845	chr8:104163845:G:A	rs1823167	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	104317425	104317426	chr8:104317426:G:A	rs2514656	G	A	A	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr8	105222436	105222437	chr8:105222437:A:T	rs151215976	A	T	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr8	105640982	105640983	chr8:105640983:G:A	rs35434512	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr8	106389423	106389424	chr8:106389424:T:C	rs2022977	T	C	T	Msx3.mouse_homeodomain_1	12	1	+	8.879276205451244	10.324398869017728	ACAATAAGTTATTAATTA
chr8	106617485	106617486	chr8:106617486:C:T	rs2045787	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr8	106772646	106772647	chr8:106772647:C:A	rs62514987	C	A	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr8	106826797	106826798	chr8:106826798:T:C	rs117697921	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	10.554500359602638	6.5850693832337575	CCAATTATATTCAAATCA
chr8	106903787	106903788	chr8:106903788:C:T	rs554547637	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr8	106904217	106904218	chr8:106904218:A:G	rs11992975	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	7.65645099726281	3.06835677823966	GCATTTATTAGCCAATTG
chr8	107389964	107389965	chr8:107389965:G:C	rs1283704	G	C	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr8	107402184	107402185	chr8:107402185:T:C	rs1283691	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	8.25248621712621	7.1758950461897335	CTACTCAAATACCAATTT
chr8	108247949	108247950	chr8:108247950:G:A	rs2045401	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	8.084834467840118	7.311994291098224	GTCGTTAATATTCAATTA
chr8	108484050	108484051	chr8:108484051:G:T	rs3802247	G	T	T	Msx3.mouse_homeodomain_1	8	1	-	6.844006787903115	7.76357361253567	CTAATTGACGAGCAAATA
chr8	108906814	108906815	chr8:108906815:C:T	rs6988622	C	T	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr8	109521752	109521753	chr8:109521753:G:A	rs1673427	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	109568683	109568684	chr8:109568684:G:T	rs78149698	G	T	g	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr8	109610967	109610968	chr8:109610968:T:A	rs59467706	T	A	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr8	110093074	110093075	chr8:110093075:T:A	rs62526224	T	A	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr8	111237045	111237046	chr8:111237046:G:A	rs73325851	G	A	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr8	111381586	111381587	chr8:111381587:C:T	rs59523937	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	10.004777526387375	8.896267971222631	GCAATTGAAAACCAAATA
chr8	111767939	111767940	chr8:111767940:T:C	rs2048358	T	C	C	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr8	112722295	112722296	chr8:112722296:A:T	rs7813569	A	T	T	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	112726408	112726409	chr8:112726409:A:G	rs4876291	A	G	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	113506518	113506519	chr8:113506519:T:G	rs4285519	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr8	113969577	113969578	chr8:113969578:G:C	rs76219245	G	C	G	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	114651711	114651712	chr8:114651712:C:G	rs72688196	C	G	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr8	114830831	114830832	chr8:114830832:T:C	rs9297534	T	C	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr8	115215195	115215196	chr8:115215196:T:C	rs28817394	T	C	t	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr8	116321558	116321559	chr8:116321559:A:G	rs12542922	A	G	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	116444916	116444917	chr8:116444917:A:G	rs144386501	A	G	A	Msx3.mouse_homeodomain_1	6	1	-	7.2337670002029855	6.581033400843345	CCACTTTCCAAGCGATTA
chr8	116639128	116639129	chr8:116639129:A:C	rs4289846	A	C	C	Msx3.mouse_homeodomain_1	6	1	+	7.713421517174214	3.468405710702054	ATCATTACTAGGCCATTA
chr8	116639131	116639132	chr8:116639132:A:G	rs4335152	A	G	G	Msx3.mouse_homeodomain_1	9	1	+	7.713421517174214	6.772877524788069	ATCATTACTAGGCCATTA
chr8	116921276	116921277	chr8:116921277:T:C	rs2921735	T	C	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr8	117667170	117667171	chr8:117667171:T:G	rs10108248	T	G	T	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr8	118019016	118019017	chr8:118019017:C:G	rs113372503	C	G	C	Msx3.mouse_homeodomain_1	15	1	+	7.520493093751349	7.520493093751349	TCAATAAAAAAGCAACTA
chr8	118116183	118116184	chr8:118116184:T:A	rs148506839	T	A	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr8	118544245	118544246	chr8:118544246:A:G	rs7834992	A	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr8	118555184	118555185	chr8:118555185:C:A	rs4421378	C	A	A	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr8	118879047	118879048	chr8:118879048:A:G	rs3134097	A	G	G	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	118898365	118898366	chr8:118898366:C:T	rs4593581	C	T	T	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr8	119203696	119203697	chr8:119203697:A:G	rs4870896	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	8.893070073482995	2.7945243936138624	TCAATTGAGTGCTGATTA
chr8	119518582	119518583	chr8:119518583:T:C	rs1374094	T	C	C	Msx3.mouse_homeodomain_1	4	1	+	8.80517955609821	2.7066338762290783	CACATTATAAAGCAATCA
chr8	119694809	119694810	chr8:119694810:A:C	rs7013772	A	C	A	Msx3.mouse_homeodomain_1	5	1	-	10.13011265944507	5.6875308819779065	AAAATTAAAAACCAATTC
chr8	120004871	120004872	chr8:120004872:T:G	rs73705877	T	G	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	120103662	120103663	chr8:120103663:G:A	rs145976361	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr8	120108764	120108765	chr8:120108765:G:A	rs75545602	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr8	120108770	120108771	chr8:120108771:T:C	rs7826920	T	C	C	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	120242264	120242265	chr8:120242265:G:A	rs80168467	G	A	G	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr8	120304839	120304840	chr8:120304840:A:G	rs6469905	A	G	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr8	120703883	120703884	chr8:120703884:G:A	rs4609235	G	A	G	Msx3.mouse_homeodomain_1	7	1	+	7.198755366059046	8.308570903382643	CTCATTAGGGAGCAATTC
chr8	120787680	120787681	chr8:120787681:T:G	rs10086173	T	G	G	Msx3.mouse_homeodomain_1	16	1	+	9.248356118939288	4.17482334282996	CAAATTAGACAAAAATTA
chr8	120868463	120868464	chr8:120868464:T:C	rs4507806	T	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr8	120989471	120989472	chr8:120989472:T:C	chr8:120989472:T:C	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr8	121147963	121147964	chr8:121147964:A:G	rs7844326	A	G	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr8	121676156	121676157	chr8:121676157:C:T	rs1008786	C	T	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr8	121721961	121721962	chr8:121721962:G:A	rs6999197	G	A	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr8	122149727	122149728	chr8:122149728:A:G	rs78145517	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr8	122253803	122253804	chr8:122253804:C:G	rs73326516	C	G	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr8	122587009	122587010	chr8:122587010:A:G	rs4870803	A	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr8	123037922	123037923	chr8:123037923:C:A	rs77335291	C	A	C	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr8	123532308	123532309	chr8:123532309:A:C	rs73330097	A	C	A	Msx3.mouse_homeodomain_1	1	1	-	10.101485227789873	7.684979241642243	TTCCTTAATAAGCAATTA
chr8	123592299	123592300	chr8:123592300:C:T	rs58536265	C	T	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	123686332	123686333	chr8:123686333:C:T	rs77967646	C	T	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr8	123817849	123817850	chr8:123817850:C:A	rs874206	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	9.777278515629899	7.2659697558610725	GTAATCAACAACCAGTTA
chr8	124413704	124413705	chr8:124413705:C:G	rs10091131	C	G	G	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr8	124701070	124701071	chr8:124701071:A:C	rs79330310	A	C	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr8	124790110	124790111	chr8:124790111:A:T	rs144639144	A	T	A	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr8	124815308	124815309	chr8:124815309:C:T	rs145792714	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr8	125070711	125070712	chr8:125070712:C:T	rs75396830	C	T	C	Msx3.mouse_homeodomain_1	17	1	+	8.15513427211996	9.371204657367672	CTAATTAAAAACAGATTC
chr8	125220041	125220042	chr8:125220042:A:G	rs16900447	A	G	A	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	125829303	125829304	chr8:125829304:A:C	rs73351845	A	C	C	Msx3.mouse_homeodomain_1	8	1	+	11.445113840738948	10.52554701610639	CCAATTCAACGGCAATTA
chr8	125840037	125840038	chr8:125840038:T:G	rs74865573	T	G	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr8	125840063	125840064	chr8:125840064:A:C	rs1822575	A	C	C	Msx3.mouse_homeodomain_1	4	1	-	8.522287329388643	2.8642980774389426	CCCATTAGGTGGCACTTA
chr8	126765275	126765276	chr8:126765276:A:G	rs7017807	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr8	126824864	126824865	chr8:126824865:C:T	rs10103938	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr8	126824865	126824866	chr8:126824866:G:T	rs1873186	G	T	T	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr8	127067397	127067398	chr8:127067398:A:G	rs2392728	A	G	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr8	127080736	127080737	chr8:127080737:G:A	rs1031589	G	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr8	127340484	127340485	chr8:127340485:C:T	rs10087810	C	T	c	Msx3.mouse_homeodomain_1	7	1	+	8.010020684500379	8.339961637216476	ACACTTACATGGCACTTA
chr8	127400691	127400692	chr8:127400692:G:T	chr8:127400692:G:T	G	T	G	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr8	127629682	127629683	chr8:127629683:T:A	rs80049769	T	A	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr8	127652073	127652074	chr8:127652074:C:T	rs76596255	C	T	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	127722227	127722228	chr8:127722228:C:T	rs7007100	C	T	T	Msx3.mouse_homeodomain_1	12	1	+	7.627598576109723	6.182475912543241	TCAATAAGGCTGCCATTA
chr8	127826785	127826786	chr8:127826786:T:A	rs79191877	T	A	T	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr8	127826816	127826817	chr8:127826817:T:C	rs4285450	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	11.138557128564859	4.231091891640851	TCAATTAATAAGCAATGA
chr8	127831992	127831993	chr8:127831993:T:C	rs28510742	T	C	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr8	127831997	127831998	chr8:127831998:A:C	rs6990683	A	C	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr8	127944851	127944852	chr8:127944852:C:T	rs13278829	C	T	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr8	128174178	128174179	chr8:128174179:A:G	rs7825733	A	G	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	128176941	128176942	chr8:128176942:C:G	rs75481366	C	G	C	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	128193432	128193433	chr8:128193433:G:A	rs17793170	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr8	128201719	128201720	chr8:128201720:T:A	rs73707445	T	A	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr8	128212433	128212434	chr8:128212434:C:A	rs2909242	C	A	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr8	128240683	128240684	chr8:128240684:T:A	rs76625702	T	A	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr8	128427316	128427317	chr8:128427317:T:A	rs1400481	T	A	T	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr8	128469601	128469602	chr8:128469602:G:A	rs186906441	G	A	g	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr8	128585412	128585413	chr8:128585413:C:T	rs1372992	C	T	T	Msx3.mouse_homeodomain_1	10	1	-	10.032261605809804	11.108852776746279	GTAATTATAGGCAGATTA
chr8	128685317	128685318	chr8:128685318:C:T	rs1367966	C	T	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr8	128735008	128735009	chr8:128735009:G:T	rs142640136	G	T	G	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr8	128774218	128774219	chr8:128774219:A:G	rs4140707	A	G	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr8	128848420	128848421	chr8:128848421:C:T	rs72726590	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr8	129062008	129062009	chr8:129062009:C:T	rs10435554	C	T	T	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr8	129238565	129238566	chr8:129238566:T:C	rs7824736	T	C	C	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr8	129319818	129319819	chr8:129319819:C:T	rs2217588	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	8.896780630808049	7.788271075643304	GTCATTGTTTACTAATTA
chr8	129418443	129418444	chr8:129418444:A:T	rs1347053	A	T	t	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr8	129521564	129521565	chr8:129521565:C:T	rs7839438	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr8	129636286	129636287	chr8:129636287:C:T	rs73399422	C	T	C	Msx3.mouse_homeodomain_1	16	1	+	10.625999474402946	13.750948627996799	GCCATTAGAAAACAATCA
chr8	129873775	129873776	chr8:129873776:A:C	rs190385783	A	C	A	Msx3.mouse_homeodomain_1	16	1	-	7.682947710152216	2.6094149340428863	CTAGTTATTAACCACTTA
chr8	129873808	129873809	chr8:129873809:A:G	rs569678592	A	G	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	129940473	129940474	chr8:129940474:T:A	rs1871943	T	A	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr8	130012300	130012301	chr8:130012301:G:A	rs1467048	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr8	130034721	130034722	chr8:130034722:C:T	rs12549633	C	T	c	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr8	130034725	130034726	chr8:130034726:T:C	rs189983138	T	C	t	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr8	130034727	130034728	chr8:130034728:C:T	rs182926796	C	T	c	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr8	130626979	130626980	chr8:130626980:G:C	rs76098431	G	C	G	Msx3.mouse_homeodomain_1	12	1	-	9.474135757935331	5.974752739319172	ATAATTGAAAAACAATTT
chr8	130884238	130884239	chr8:130884239:G:T	rs11779887	G	T	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr8	130962020	130962021	chr8:130962021:A:G	rs7009501	A	G	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr8	132055507	132055508	chr8:132055508:T:A	rs183729520	T	A	T	Msx3.mouse_homeodomain_1	14	1	-	9.979421508814568	5.652661157465013	CTATTTAAAATTCAATTA
chr8	132104003	132104004	chr8:132104004:C:T	rs6998880	C	T	t	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr8	132144190	132144191	chr8:132144191:A:G	rs2469517	A	G	A	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr8	133069476	133069477	chr8:133069477:A:G	rs2245152	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.450369440528135	1.5429042036041305	CACATTAATAGCAAATTA
chr8	133072394	133072395	chr8:133072395:A:G	rs4736623	A	G	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	133096473	133096474	chr8:133096474:G:A	rs2739180	G	A	A	Msx3.mouse_homeodomain_1	7	1	-	7.321481863727123	7.651422816443222	GTAGTTACTCAGCAATTG
chr8	133294841	133294842	chr8:133294842:A:G	rs34151693	A	G	G	Msx3.mouse_homeodomain_1	3	1	+	7.9358715476654424	3.9664405712965656	TCAATGAAGATGCAATTT
chr8	133294865	133294866	chr8:133294866:C:T	rs35118937	C	T	C	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr8	133351402	133351403	chr8:133351403:G:A	rs2929953	G	A	G	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	133351415	133351416	chr8:133351416:G:A	rs2929954	G	A	A	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr8	133359561	133359562	chr8:133359562:C:A	rs2976560	C	A	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr8	133374093	133374094	chr8:133374094:A:C	rs737438	A	C	C	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr8	133574393	133574394	chr8:133574394:A:G	rs7839535	A	G	A	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr8	133589241	133589242	chr8:133589242:T:A	rs10108854	T	A	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr8	133852015	133852016	chr8:133852016:G:A	rs115689610	G	A	G	Msx3.mouse_homeodomain_1	12	1	+	12.49402850507003	13.482102763917364	TTAATTAAAATCGAATTA
chr8	134058423	134058424	chr8:134058424:T:C	rs10505617	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	12.122010037683644	9.605141409746565	TCATTTAAAAAGCAATTA
chr8	134160552	134160553	chr8:134160553:T:C	rs7002928	T	C	C	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr8	134410665	134410666	chr8:134410666:A:G	rs7003297	A	G	G	Msx3.mouse_homeodomain_1	2	1	+	6.364644566403219	3.8477759384661425	CCAAACAACTGGCAATTA
chr8	134564764	134564765	chr8:134564765:G:T	rs11166592	G	T	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr8	134692688	134692689	chr8:134692689:T:C	rs146502681	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	8.501239233700751	3.9131450146776006	CCTATTTCAGTGCAATTA
chr8	134777779	134777780	chr8:134777780:G:A	rs77039133	G	A	g	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr8	134777805	134777806	chr8:134777806:G:A	rs4404874	G	A	g	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr8	134833487	134833488	chr8:134833488:T:C	rs375268425	T	C	T	Msx3.mouse_homeodomain_1	14	1	+	10.696802897905293	11.46258421100066	TCAATTAACCAGCATTTA
chr8	135038169	135038170	chr8:135038170:G:T	rs10875449	G	T	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr8	135055274	135055275	chr8:135055275:G:C	rs1480783	G	C	G	Msx3.mouse_homeodomain_1	11	1	+	8.697481037997463	8.782946578707726	CAAATCAATCTGTAATTA
chr8	135187450	135187451	chr8:135187451:G:A	rs7016543	G	A	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr8	135901171	135901172	chr8:135901172:C:T	rs6999978	C	T	-	Msx3.mouse_homeodomain_1	0	1	-	10.385110244737469	9.27660068957272	GTTATTACTAATCAATTA
chr8	135907964	135907965	chr8:135907965:T:C	rs28464915	T	C	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr8	136041883	136041884	chr8:136041884:T:C	rs13252697	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr8	136048695	136048696	chr8:136048696:T:C	rs6984709	T	C	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	136542396	136542397	chr8:136542397:G:A	rs17643956	G	A	G	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr8	136976835	136976836	chr8:136976836:G:A	rs11778870	G	A	g	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr8	137573125	137573126	chr8:137573126:G:T	rs28375555	G	T	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	137625521	137625522	chr8:137625522:A:G	rs11774188	A	G	G	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr8	137625560	137625561	chr8:137625561:T:G	rs10090125	T	G	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr8	137748951	137748952	chr8:137748952:T:C	rs7822236	T	C	t	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr8	138822381	138822382	chr8:138822382:G:T	rs75940441	G	T	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr8	139217148	139217149	chr8:139217149:G:T	rs7005378	G	T	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr8	139795241	139795242	chr8:139795242:T:C	rs10464980	T	C	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr8	140031743	140031744	chr8:140031744:A:G	rs10216700	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.655410554578015	4.685979578209137	CCAAGTAACTACAAATTA
chr8	140159397	140159398	chr8:140159398:T:C	rs11782239	T	C	C	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr8	140448291	140448292	chr8:140448292:C:T	rs75652434	C	T	C	Msx3.mouse_homeodomain_1	0	1	-	9.811397693402004	8.70288813823726	GCAATTAGACATCAGTTA
chr8	140448307	140448308	chr8:140448308:G:A	rs62527783	G	A	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr8	140467418	140467419	chr8:140467419:C:G	rs147327629	C	G	C	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr8	140648921	140648922	chr8:140648922:T:A	rs28796951	T	A	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr8	140724286	140724287	chr8:140724287:C:T	rs7834669	C	T	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr8	140922072	140922073	chr8:140922073:G:C	rs118016500	G	C	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr8	141558809	141558810	chr8:141558810:G:A	rs77396480	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr8	141860737	141860738	chr8:141860738:C:T	rs35460878	C	T	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr8	141868254	141868255	chr8:141868255:A:G	rs4917236	A	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr8	141904427	141904428	chr8:141904428:G:A	rs67715617	G	A	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr8	142286442	142286443	chr8:142286443:C:T	rs67317093	C	T	C	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr8	142617077	142617078	chr8:142617078:T:C	rs73377723	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr8	142642006	142642007	chr8:142642007:T:C	rs9297970	T	C	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr8	142929351	142929352	chr8:142929352:G:A	rs36142026	G	A	g	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr8	143140426	143140427	chr8:143140427:A:T	rs10107751	A	T	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr8	143905000	143905001	chr8:143905001:A:G	rs56221439	A	G	.	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr8	144752345	144752346	chr8:144752346:T:C	rs4344117	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr9	177033	177034	chr9:177034:T:G	rs3008099	T	G	.	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr9	223331	223332	chr9:223332:A:G	rs617467	A	G	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr9	223338	223339	chr9:223339:A:G	rs617453	A	G	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr9	566524	566525	chr9:566525:G:T	rs2641978	G	T	T	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr9	594261	594262	chr9:594262:A:C	rs2641998	A	C	A	Msx3.mouse_homeodomain_1	10	1	+	7.9877099894419255	6.45016616559309	GAAGTCACAAAGCAATTA
chr9	648942	648943	chr9:648943:A:G	rs12351209	A	G	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	676008	676009	chr9:676009:T:G	rs79160146	T	G	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr9	801570	801571	chr9:801571:G:A	rs10815717	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	9.111789878178607	7.666667214612124	TAAATTATGAAGCAATTT
chr9	801601	801602	chr9:801602:T:C	rs1323267	T	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr9	904167	904168	chr9:904168:A:G	rs113476485	A	G	A	Msx3.mouse_homeodomain_1	6	1	-	8.57577661684778	7.92304301748814	TAAATTTCAAGCCAATTA
chr9	1320871	1320872	chr9:1320872:A:G	rs11790506	A	G	A	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr9	1524185	1524186	chr9:1524186:C:T	rs7022604	C	T	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr9	1994396	1994397	chr9:1994397:C:G	rs79079373	C	G	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr9	2014260	2014261	chr9:2014261:G:C	rs982280247	G	C	G	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr9	2180441	2180442	chr9:2180442:T:A	rs1011212707	T	A	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	2265002	2265003	chr9:2265003:G:C	rs6475660	G	C	C	Msx3.mouse_homeodomain_1	0	1	+	9.061874937095627	8.694523427221014	GCAATTATAAATATATTA
chr9	2386047	2386048	chr9:2386048:G:T	rs117282965	G	T	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	2493527	2493528	chr9:2493528:A:G	rs1002394	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	8.306395155069733	4.336964178700853	GCAATCAAATTAAAATCA
chr9	2536318	2536319	chr9:2536319:T:A	rs669341	T	A	T	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr9	3018434	3018435	chr9:3018435:A:C	rs35515607	A	C	A	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr9	3760593	3760594	chr9:3760594:T:C	rs2026927	T	C	.	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr9	3768902	3768903	chr9:3768903:G:A	rs12352374	G	A	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr9	3970102	3970103	chr9:3970103:G:A	rs675148	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr9	4038195	4038196	chr9:4038196:G:C	rs111258856	G	C	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr9	4420508	4420509	chr9:4420509:C:A	chr9:4420509:C:A	C	A	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	4664748	4664749	chr9:4664749:C:T	rs1485202	C	T	T	Msx3.mouse_homeodomain_1	26	0	-	0	0	.
chr9	4755514	4755515	chr9:4755515:C:T	rs527713913	C	T	C	Msx3.mouse_homeodomain_1	13	1	+	8.603437698719649	7.305222292357059	CCTATTAATGCCCCATTA
chr9	5099676	5099677	chr9:5099677:G:A	rs3780374	G	A	A	Msx3.mouse_homeodomain_1	13	1	+	11.25376709647437	13.311041275380568	CAAATTAGTAACCGATTA
chr9	5230782	5230783	chr9:5230783:A:G	rs111587560	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr9	5230807	5230808	chr9:5230808:G:A	rs10975015	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.
chr9	5392454	5392455	chr9:5392455:T:C	rs41304839	T	C	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	6009219	6009220	chr9:6009220:A:G	rs78450583	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr9	6449700	6449701	chr9:6449701:C:T	rs79793188	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr9	6655055	6655056	chr9:6655056:T:C	rs7031325	T	C	C	Msx3.mouse_homeodomain_1	13	1	-	8.383788530490929	6.32651435158473	TCTATAATGTTCCAATTA
chr9	6656805	6656806	chr9:6656806:T:C	rs139950699	T	C	T	Msx3.mouse_homeodomain_1	1	1	+	7.26024870077149	8.108091571652174	CTCCTTTGAAAGCAATTA
chr9	6656813	6656814	chr9:6656814:A:C	rs35750037	A	C	A	Msx3.mouse_homeodomain_1	9	1	+	7.26024870077149	5.95401839682716	CTCCTTTGAAAGCAATTA
chr9	6724305	6724306	chr9:6724306:A:T	rs1477406788	A	T	a	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr9	6888426	6888427	chr9:6888427:C:G	rs7850907	C	G	G	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr9	7334035	7334036	chr9:7334036:G:C	rs77679373	G	C	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr9	7371387	7371388	chr9:7371388:G:A	rs10511466	G	A	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr9	7385457	7385458	chr9:7385458:G:A	rs142620435	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr9	7402124	7402125	chr9:7402125:G:A	rs13298225	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr9	7467488	7467489	chr9:7467489:A:G	rs114190297	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	6.432641356289163	1.8445471372660132	CCACTTGACAGACAATCA
chr9	7516710	7516711	chr9:7516711:C:T	rs56110932	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.866885075168762	7.6699340499933495	ACTATTAAAATGTAATTT
chr9	7537977	7537978	chr9:7537978:T:G	rs4742369	T	G	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	7560957	7560958	chr9:7560958:G:T	rs28408590	G	T	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr9	7560992	7560993	chr9:7560993:T:C	rs28705850	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr9	7790192	7790193	chr9:7790193:T:C	rs140477457	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	7.785512525953072	6.778963193107863	GCAATCATATACTGATTT
chr9	8074896	8074897	chr9:8074897:G:A	rs10815746	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr9	8346356	8346357	chr9:8346357:T:C	rs7848818	T	C	T	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	8510567	8510568	chr9:8510568:A:G	rs2039691	A	G	G	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr9	8514897	8514898	chr9:8514898:G:C	rs35789317	G	C	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr9	9662427	9662428	chr9:9662428:T:A	rs10759084	T	A	T	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr9	9730365	9730366	chr9:9730366:C:T	rs1934268	C	T	T	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr9	9949430	9949431	chr9:9949431:A:T	rs10759117	A	T	T	Msx3.mouse_homeodomain_1	5	1	+	7.235344455666632	10.056746502823014	CCAATAAGCAACAACTTA
chr9	10060265	10060266	chr9:10060266:T:C	rs1778517	T	C	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	10060268	10060269	chr9:10060269:T:G	rs12685620	T	G	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr9	10060674	10060675	chr9:10060675:T:C	rs1661048	T	C	C	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr9	10121265	10121266	chr9:10121266:A:G	rs184106	A	G	G	Msx3.mouse_homeodomain_1	4	1	-	7.333133769672037	1.234588089802903	ACCATTTCCCTCCAATTA
chr9	10254215	10254216	chr9:10254216:T:A	rs13293223	T	A	T	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr9	10265658	10265659	chr9:10265659:C:T	rs12554798	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	10941884	10941885	chr9:10941885:A:C	rs10959387	A	C	A	Msx3.mouse_homeodomain_1	15	1	-	10.283588833422627	3.37612359649862	CCACTTAGAAACCAATAA
chr9	11204041	11204042	chr9:11204042:G:C	rs7852488	G	C	G	Msx3.mouse_homeodomain_1	-8	0	+	0	0	.
chr9	11934131	11934132	chr9:11934132:A:G	rs78581777	A	G	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr9	12162854	12162855	chr9:12162855:C:T	rs10809705	C	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr9	12162865	12162866	chr9:12162866:C:T	rs12337214	C	T	C	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr9	12599560	12599561	chr9:12599561:C:T	rs13283146	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.113782896089923	7.265940025209235	GCAATAATAAAGCCCTTA
chr9	12655079	12655080	chr9:12655080:A:G	rs6474722	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.17817617780016	3.2087452014312836	ACAATTGTCTGCCATTTA
chr9	12656786	12656787	chr9:12656787:A:G	rs118087215	A	G	A	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr9	12777744	12777745	chr9:12777745:A:T	rs10809839	A	T	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr9	12777794	12777795	chr9:12777795:T:C	rs10809840	T	C	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr9	12794666	12794667	chr9:12794667:G:T	rs192078910	G	T	G	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr9	12818408	12818409	chr9:12818409:A:C	rs7875508	A	C	C	Msx3.mouse_homeodomain_1	2	1	+	6.452480651288501	4.069893209817779	CCAAAAATCAACCAATTA
chr9	12818409	12818410	chr9:12818410:A:C	rs7875509	A	C	A	Msx3.mouse_homeodomain_1	3	1	+	6.452480651288501	3.5723062867556035	CCAAAAATCAACCAATTA
chr9	13705859	13705860	chr9:13705860:G:A	rs180827221	G	A	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr9	13705882	13705883	chr9:13705883:T:C	rs992457	T	C	T	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr9	13750430	13750431	chr9:13750431:A:G	rs10738340	A	G	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr9	13786493	13786494	chr9:13786494:C:T	rs745034	C	T	C	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr9	13865892	13865893	chr9:13865893:C:T	rs12342957	C	T	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	14080044	14080045	chr9:14080045:C:G	rs881354	C	G	C	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr9	14373822	14373823	chr9:14373823:T:C	rs76300257	T	C	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr9	14373833	14373834	chr9:14373834:T:C	rs76066417	T	C	C	Msx3.mouse_homeodomain_1	13	1	-	8.453896393626476	6.3966222147202805	GTGATTGAAACATAATTA
chr9	14396011	14396012	chr9:14396012:A:G	rs72700549	A	G	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr9	14806849	14806850	chr9:14806850:C:A	rs10810249	C	A	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr9	14960982	14960983	chr9:14960983:G:A	rs77247737	G	A	G	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr9	15012980	15012981	chr9:15012981:A:G	rs9886868	A	G	A	Msx3.mouse_homeodomain_1	16	1	-	6.6776918159859475	3.5527426623920944	CCAATTAGCTAGGCATTG
chr9	15155382	15155383	chr9:15155383:C:T	rs2761135	C	T	t	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr9	15206198	15206199	chr9:15206199:T:C	rs1196402646	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr9	15206209	15206210	chr9:15206210:A:G	rs558187935	A	G	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr9	15694875	15694876	chr9:15694876:C:G	rs139248006	C	G	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr9	15737732	15737733	chr9:15737733:G:A	rs10810438	G	A	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr9	16106660	16106661	chr9:16106661:C:A	rs765510	C	A	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr9	16179983	16179984	chr9:16179984:A:G	rs10962317	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr9	16206757	16206758	chr9:16206758:T:G	rs58804257	T	G	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	16206761	16206762	chr9:16206762:T:G	rs4961670	T	G	G	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr9	16309723	16309724	chr9:16309724:T:C	rs13298974	T	C	C	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	16412869	16412870	chr9:16412870:T:G	rs16934619	T	G	T	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr9	16555981	16555982	chr9:16555982:A:G	rs28714603	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr9	16693850	16693851	chr9:16693851:G:A	rs148789996	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr9	16728533	16728534	chr9:16728534:A:C	rs1411432	A	C	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr9	17216198	17216199	chr9:17216199:C:T	rs192247663	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr9	17216247	17216248	chr9:17216248:A:T	rs12236896	A	T	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr9	17531553	17531554	chr9:17531554:A:G	rs76113992	A	G	A	Msx3.mouse_homeodomain_1	3	1	+	7.820212581117557	3.8507816047486787	CCAATTAGTATCCATTTT
chr9	17631553	17631554	chr9:17631554:A:C	rs1998247	A	C	A	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr9	17871583	17871584	chr9:17871584:C:T	rs12002537	C	T	C	Msx3.mouse_homeodomain_1	13	1	+	8.867303041946126	7.569087635583537	CCACTTAACAGGTCATTA
chr9	18185684	18185685	chr9:18185685:C:T	rs10810920	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr9	18362866	18362867	chr9:18362867:A:G	rs10511652	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr9	18366907	18366908	chr9:18366908:C:G	rs79093641	C	G	C	Msx3.mouse_homeodomain_1	1	1	+	6.746629756134083	3.4822808991057688	CCCATCACCAACCATTTA
chr9	18394050	18394051	chr9:18394051:T:C	rs545998086	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	6.996259048844137	0.08879381192013214	GCCTTTAATTACCAATTG
chr9	19431852	19431853	chr9:19431853:A:G	rs764707114	A	G	A	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr9	19508129	19508130	chr9:19508130:T:A	rs7854673	T	A	A	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	19642564	19642565	chr9:19642565:G:A	rs16937677	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	8.219015882583236	7.022064857407826	CCACTTAAAGAGTAGTTA
chr9	19784195	19784196	chr9:19784196:C:T	rs2209741	C	T	C	Msx3.mouse_homeodomain_1	-8	0	-	0	0	.
chr9	20180856	20180857	chr9:20180857:G:C	rs1360681	G	C	G	Msx3.mouse_homeodomain_1	1	1	-	9.110137511168439	5.845788654140123	GCTATTACAAGAAAATTA
chr9	20302445	20302446	chr9:20302446:T:C	rs78091395	T	C	T	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr9	20321212	20321213	chr9:20321213:C:T	rs1034585	C	T	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr9	20622778	20622779	chr9:20622779:A:G	rs73434598	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr9	20622783	20622784	chr9:20622784:G:A	chr9:20622784:G:A	G	A	g	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr9	20684938	20684939	chr9:20684939:C:T	rs896527125	C	T	C	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr9	20940130	20940131	chr9:20940131:C:A	rs7041086	C	A	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr9	20987879	20987880	chr9:20987880:G:A	rs10811448	G	A	G	Msx3.mouse_homeodomain_1	2	1	-	9.581098865908118	8.808258689166223	GCCATTATATTTCCATTA
chr9	21027815	21027816	chr9:21027816:G:T	rs4355879	G	T	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr9	21316313	21316314	chr9:21316314:T:C	rs12683349	T	C	C	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr9	22003223	22003224	chr9:22003224:C:T	rs3217992	C	T	C	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr9	22041890	22041891	chr9:22041891:A:G	rs77851341	A	G	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr9	22210492	22210493	chr9:22210493:C:A	chr9:22210493:C:A	C	A	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr9	22277169	22277170	chr9:22277170:T:C	rs1679027	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr9	22395570	22395571	chr9:22395571:G:A	rs35985188	G	A	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr9	23005443	23005444	chr9:23005444:G:A	rs138084622	G	A	G	Msx3.mouse_homeodomain_1	10	1	+	7.850722058986354	8.927313229922827	CCAATCATTTGCCATTTA
chr9	23005955	23005956	chr9:23005956:T:C	rs117452802	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr9	23255492	23255493	chr9:23255493:A:G	rs566000654	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.189042113480259	3.600947894457108	ATAAATACAAAGCAATTA
chr9	23765512	23765513	chr9:23765513:T:C	rs9298850	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	6.771124472046663	2.8016934956777844	CCAATCACTTAGGAATTG
chr9	23820211	23820212	chr9:23820212:A:G	rs72706959	A	G	A	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr9	24572491	24572492	chr9:24572492:G:A	rs1888108	G	A	A	Msx3.mouse_homeodomain_1	12	1	-	8.798583080435503	7.3534604168690185	GCCATTATATAACAGTTA
chr9	25090973	25090974	chr9:25090974:T:C	rs74836245	T	C	T	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	25679138	25679139	chr9:25679139:C:T	rs10738728	C	T	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr9	25679142	25679143	chr9:25679143:C:T	rs10738729	C	T	C	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr9	25717387	25717388	chr9:25717388:A:G	rs1231330	A	G	A	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr9	25913758	25913759	chr9:25913759:G:T	rs985381	G	T	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr9	26033546	26033547	chr9:26033547:T:G	rs74467602	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	7.202608756258351	4.318415699780974	CCCATTGCTATGCAATCA
chr9	26310467	26310468	chr9:26310468:T:A	rs10967300	T	A	T	Msx3.mouse_homeodomain_1	15	1	+	7.846970352502949	1.768056933145092	GCACTTATGAGGTAATCA
chr9	26445138	26445139	chr9:26445139:T:C	rs74508919	T	C	t	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr9	26675173	26675174	chr9:26675174:T:G	rs12236180	T	G	T	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr9	26746591	26746592	chr9:26746592:T:C	rs10967508	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	7.946685255392793	5.553699512882291	AAAATTAGCTACCATTTA
chr9	26747860	26747861	chr9:26747861:C:T	rs10115941	C	T	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr9	26788018	26788019	chr9:26788019:G:T	rs17693864	G	T	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr9	27204799	27204800	chr9:27204800:G:A	rs566490	G	A	G	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr9	27204803	27204804	chr9:27204804:A:G	rs593621	A	G	G	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr9	27205022	27205023	chr9:27205023:G:A	rs542913	G	A	G	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr9	27281152	27281153	chr9:27281153:G:A	rs12343358	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr9	27281155	27281156	chr9:27281156:A:C	rs75133775	A	C	A	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr9	27466827	27466828	chr9:27466828:T:C	rs7027614	T	C	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr9	27569658	27569659	chr9:27569659:T:C	rs76602706	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr9	27865213	27865214	chr9:27865214:A:G	rs17780713	A	G	G	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr9	28616673	28616674	chr9:28616674:A:C	rs10812853	A	C	C	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr9	28923667	28923668	chr9:28923668:A:C	chr9:28923668:A:C	A	C	A	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr9	28923669	28923670	chr9:28923670:A:G	chr9:28923670:A:G	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr9	28970409	28970410	chr9:28970410:T:C	rs1392336289	T	C	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr9	29465920	29465921	chr9:29465921:C:T	rs4445309	C	T	T	Msx3.mouse_homeodomain_1	13	1	-	7.561112047521495	9.618386226427692	ACCATTGTGTTCCGATTA
chr9	29857419	29857420	chr9:29857420:G:A	rs10757915	G	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr9	30086008	30086009	chr9:30086009:T:G	rs1780068	T	G	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr9	30639981	30639982	chr9:30639982:C:G	rs7468238	C	G	C	Msx3.mouse_homeodomain_1	7	1	+	10.274515413502456	10.55458642288362	CAAATTACAAAAAAATTA
chr9	30639998	30639999	chr9:30639999:G:C	rs4878447	G	C	C	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr9	30913467	30913468	chr9:30913468:G:C	rs10969973	G	C	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr9	31598413	31598414	chr9:31598414:T:C	rs35037448	T	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr9	32141322	32141323	chr9:32141323:A:G	rs16917928	A	G	A	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr9	32268048	32268049	chr9:32268049:C:G	rs1537157	C	G	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	32341612	32341613	chr9:32341613:G:A	rs10970932	G	A	A	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr9	33209146	33209147	chr9:33209147:T:C	rs4879673	T	C	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr9	33216485	33216486	chr9:33216486:T:C	rs563512	T	C	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	33216529	33216530	chr9:33216530:C:T	rs477422	C	T	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr9	33397151	33397152	chr9:33397152:C:T	rs12346759	C	T	C	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr9	33510750	33510751	chr9:33510751:T:G	rs370349362	T	G	.	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr9	33721009	33721010	chr9:33721010:T:G	rs72711716	T	G	T	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr9	33782865	33782866	chr9:33782866:G:A	rs2142059	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr9	34023573	34023574	chr9:34023574:C:T	rs1785502	C	T	T	Msx3.mouse_homeodomain_1	10	1	+	8.869274338761748	9.913246638635464	ACAATGAATACGTAATTA
chr9	34151281	34151282	chr9:34151282:G:T	rs10971956	G	T	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr9	34961473	34961474	chr9:34961474:A:G	rs7025995	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	7.800643737044347	6.9085547049731	GCAAGTAAGTAGCACTTA
chr9	35108789	35108790	chr9:35108790:C:A	rs533101866	C	A	c	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	35640947	35640948	chr9:35640948:C:T	rs10814264	C	T	c	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr9	35648662	35648663	chr9:35648663:C:T	rs79245869	C	T	C	Msx3.mouse_homeodomain_1	-5	0	+	0	0	.
chr9	35716068	35716069	chr9:35716069:T:C	rs2737273	T	C	T	Msx3.mouse_homeodomain_1	15	1	+	11.236500493211041	4.329035256287037	TCAATTAAAAAATAATTT
chr9	35949204	35949205	chr9:35949205:T:G	rs13283021	T	G	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr9	35980754	35980755	chr9:35980755:C:G	rs62543569	C	G	c	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr9	36037716	36037717	chr9:36037717:G:T	rs79829237	G	T	g	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr9	36173178	36173179	chr9:36173179:G:C	rs72731411	G	C	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr9	36322623	36322624	chr9:36322624:C:T	rs10972856	C	T	A	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr9	36961474	36961475	chr9:36961475:A:C	rs12552580	A	C	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr9	36961552	36961553	chr9:36961553:C:T	rs114350357	C	T	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr9	36986445	36986446	chr9:36986446:A:C	rs375760913	A	C	A	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr9	37294436	37294437	chr9:37294437:A:G	rs17488002	A	G	A	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr9	37405237	37405238	chr9:37405238:C:T	rs2087357	C	T	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr9	37405284	37405285	chr9:37405285:G:A	rs2087356	G	A	G	Msx3.mouse_homeodomain_1	35	0	+	0	0	.
chr9	37420319	37420320	chr9:37420320:G:A	rs60485412	G	A	G	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr9	38155132	38155133	chr9:38155133:T:C	rs72727713	T	C	T	Msx3.mouse_homeodomain_1	6	1	-	8.837093441140112	6.395016214208558	ACAATTACTAAGGAATTG
chr9	38348619	38348620	chr9:38348620:A:G	rs1923429	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	11.068806700025842	4.970261020156711	TTAATAAAAAAGAAATTA
chr9	38352981	38352982	chr9:38352982:T:C	chr9:38352982:T:C	T	C	T	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr9	38381404	38381405	chr9:38381405:C:T	rs146139503	C	T	C	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr9	38443760	38443761	chr9:38443761:G:A	rs7034041	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr9	39464043	39464044	chr9:39464044:G:A	rs1352796832	G	A	g	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr9	40939344	40939345	chr9:40939345:G:C	rs202190107	G	C	.	Msx3.mouse_homeodomain_1	0	1	-	9.131487943110258	9.498839452984871	CAAATTCACAGGCAATTA
chr9	41230683	41230684	chr9:41230684:G:A	rs1434092940	G	A	.	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr9	41230701	41230702	chr9:41230702:C:G	rs1385918796	C	G	.	Msx3.mouse_homeodomain_1	12	1	+	9.463548437771593	5.964165419155436	GTAATCATAATGCTATTA
chr9	41230708	41230709	chr9:41230709:T:A	chr9:41230709:T:A	T	A	.	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr9	41233106	41233107	chr9:41233107:T:A	rs1350688101	T	A	.	Msx3.mouse_homeodomain_1	4	1	+	10.431988179111361	3.526966633375281	ATTATTAATTAGTAATTA
chr9	41923877	41923878	chr9:41923878:C:T	rs747621437	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	9.29416841407884	8.097217388903431	CCCATTATTTAGCAATAA
chr9	62861213	62861214	chr9:62861214:G:A	rs371354111	G	A	.	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	68708952	68708953	chr9:68708953:G:A	rs112019670	G	A	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	68895833	68895834	chr9:68895834:G:A	rs7043133	G	A	A	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr9	68988156	68988157	chr9:68988157:A:G	rs73443576	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr9	69432345	69432346	chr9:69432346:G:C	rs188190996	G	C	G	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr9	69474903	69474904	chr9:69474904:A:G	rs2781540	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr9	69543946	69543947	chr9:69543947:G:A	rs76464672	G	A	G	Msx3.mouse_homeodomain_1	11	1	-	8.84228166111188	7.132051242128171	ACAATTTATGTCAAATTA
chr9	69753998	69753999	chr9:69753999:G:A	rs139243783	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	69862095	69862096	chr9:69862096:A:G	rs79655726	A	G	A	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr9	70079624	70079625	chr9:70079625:T:G	rs867595	T	G	T	Msx3.mouse_homeodomain_1	7	1	-	9.87204011563992	8.482153568935164	GCAGTTTAGAAGCAATTA
chr9	70303974	70303975	chr9:70303975:T:C	rs11998951	T	C	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	70390315	70390316	chr9:70390316:G:A	rs185284667	G	A	G	Msx3.mouse_homeodomain_1	16	1	+	6.7988695757747655	7.987564424361035	GCAATAGCAAACCAATGA
chr9	70406756	70406757	chr9:70406757:C:A	rs373794257	C	A	C	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr9	70474632	70474633	chr9:70474633:G:A	rs551701327	G	A	G	Msx3.mouse_homeodomain_1	12	1	-	8.929442845910696	7.484320182344216	ATATTTACTAAGCAATTA
chr9	70558292	70558293	chr9:70558293:C:T	rs2309743	C	T	C	Msx3.mouse_homeodomain_1	12	1	-	8.162405855025149	9.150480113872483	CCAATTGAAATCGACTTA
chr9	70563745	70563746	chr9:70563746:G:A	rs4745016	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr9	70577237	70577238	chr9:70577238:A:T	rs11788499	A	T	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr9	70692573	70692574	chr9:70692574:G:A	rs10780959	G	A	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	70856835	70856836	chr9:70856836:T:C	rs17470958	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	70856866	70856867	chr9:70856867:T:C	rs34543029	T	C	T	Msx3.mouse_homeodomain_1	24	0	+	0	0	.
chr9	70880022	70880023	chr9:70880023:C:T	rs13283806	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	8.52045036467306	6.810219945689352	CTGATAAAAGACAAATTA
chr9	71271980	71271981	chr9:71271981:G:A	rs78067752	G	A	G	Msx3.mouse_homeodomain_1	21	0	+	0	0	.
chr9	71551015	71551016	chr9:71551016:T:C	rs4142367	T	C	C	Msx3.mouse_homeodomain_1	15	1	+	8.704666584898657	1.7972013479746525	CCACTTGAGAACCAATCA
chr9	71551016	71551017	chr9:71551017:C:A	rs4142366	C	A	C	Msx3.mouse_homeodomain_1	16	1	+	8.704666584898657	7.944777810969451	CCACTTGAGAACCAATCA
chr9	71807291	71807292	chr9:71807292:G:C	rs41423544	G	C	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr9	72138942	72138943	chr9:72138943:T:C	rs12337244	T	C	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr9	72255194	72255195	chr9:72255195:T:C	rs76159487	T	C	T	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr9	72458681	72458682	chr9:72458682:T:C	rs1105115	T	C	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	72474593	72474594	chr9:72474594:C:T	rs4584203	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	7.531162085736857	6.334211060561448	CCAATTGTGAAGTAGTTA
chr9	72614331	72614332	chr9:72614332:A:G	rs920901	A	G	A	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr9	73051012	73051013	chr9:73051013:G:A	rs11143447	G	A	G	Msx3.mouse_homeodomain_1	-12	0	-	0	0	.
chr9	73079449	73079450	chr9:73079450:T:C	rs12348634	T	C	C	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr9	73118361	73118362	chr9:73118362:T:C	rs113963296	T	C	T	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr9	73147703	73147704	chr9:73147704:C:T	rs11789942	C	T	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr9	73161735	73161736	chr9:73161736:A:C	rs10521451	A	C	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr9	75333738	75333739	chr9:75333739:G:A	rs10115442	G	A	a	Msx3.mouse_homeodomain_1	11	1	+	6.585005301935481	5.38805427676007	ACAATTGACCAGCAAATA
chr9	75477238	75477239	chr9:75477239:G:T	rs7042130	G	T	G	Msx3.mouse_homeodomain_1	5	1	-	9.754413162571542	9.32599685792566	ACAATCAAAGACTCATTA
chr9	75477261	75477262	chr9:75477262:T:C	rs7031475	T	C	T	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr9	75957432	75957433	chr9:75957433:A:C	rs117558856	A	C	A	Msx3.mouse_homeodomain_1	17	1	+	9.970686166492811	5.383829585366303	ACAATAAATAGCAAATTA
chr9	75964351	75964352	chr9:75964352:T:C	rs10781321	T	C	T	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr9	76139000	76139001	chr9:76139001:A:C	rs1338743	A	C	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr9	76292432	76292433	chr9:76292433:G:C	rs10117240	G	C	G	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr9	76372563	76372564	chr9:76372564:C:T	rs2501937	C	T	C	Msx3.mouse_homeodomain_1	7	1	+	8.817424358376769	9.147365311092866	GCAATTACACTCTAATGA
chr9	76852236	76852237	chr9:76852237:C:T	rs7021308	C	T	T	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr9	76852274	76852275	chr9:76852275:A:T	rs7037333	A	T	a	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	77032268	77032269	chr9:77032269:C:G	rs12378838	C	G	C	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr9	77133453	77133454	chr9:77133454:A:G	rs73459825	A	G	A	Msx3.mouse_homeodomain_1	17	1	-	10.467453841505352	9.25138345625764	CCAATTATTGAACAATTT
chr9	77417383	77417384	chr9:77417384:C:A	rs13286867	C	A	C	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr9	77751742	77751743	chr9:77751743:G:C	rs12336735	G	C	G	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr9	77751746	77751747	chr9:77751747:C:G	rs138523613	C	G	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr9	77843971	77843972	chr9:77843972:C:A	rs13440098	C	A	C	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr9	77888902	77888903	chr9:77888903:T:G	rs10118492	T	G	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr9	77947205	77947206	chr9:77947206:T:C	rs74909187	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr9	78112703	78112704	chr9:78112704:A:G	rs11145699	A	G	A	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr9	78235122	78235123	chr9:78235123:T:C	rs17064239	T	C	t	Msx3.mouse_homeodomain_1	9	1	+	8.780168102210737	7.888079070139487	CCACTTAGCTTCCACTTA
chr9	78278473	78278474	chr9:78278474:A:C	rs7851321	A	C	A	Msx3.mouse_homeodomain_1	12	1	-	8.492390160448533	6.438129805398856	GCAATTTTCCATTAATTA
chr9	78355150	78355151	chr9:78355151:C:T	rs7029142	C	T	T	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr9	78440008	78440009	chr9:78440009:A:T	rs7039065	A	T	A	Msx3.mouse_homeodomain_1	12	1	-	10.040693506526107	8.974507410323763	GTAATTCAGGACTAATTA
chr9	78927423	78927424	chr9:78927424:A:G	rs10780274	A	G	A	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr9	78927437	78927438	chr9:78927438:A:G	rs10780275	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	7.685318530257832	8.793828085422575	ACCTTTATAAGGCAATTA
chr9	79060776	79060777	chr9:79060777:A:T	rs7021873	A	T	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	79129626	79129627	chr9:79129627:T:C	rs4146296	T	C	C	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr9	79166052	79166053	chr9:79166053:C:T	rs58377864	C	T	C	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr9	79489661	79489662	chr9:79489662:C:T	rs112320925	C	T	C	Msx3.mouse_homeodomain_1	11	1	+	7.994112767568082	6.283882348584373	GACATTACATGCCAATTG
chr9	79572376	79572377	chr9:79572377:A:T	rs77036232	A	T	A	Msx3.mouse_homeodomain_1	17	1	+	9.720495506622171	6.349709310743373	CCAATTAAAAGACAAATA
chr9	79695982	79695983	chr9:79695983:T:A	rs914715	T	A	A	Msx3.mouse_homeodomain_1	14	1	-	7.090544477221374	2.763784125871818	GAAATCAACACCCAATAA
chr9	79945043	79945044	chr9:79945044:T:G	rs1329579	T	G	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr9	80062773	80062774	chr9:80062774:A:T	rs62570581	A	T	A	Msx3.mouse_homeodomain_1	10	1	-	7.036499259005174	7.530070782980298	CTAATTACCATCCCATTC
chr9	80435673	80435674	chr9:80435674:T:G	chr9:80435674:T:G	T	G	T	Msx3.mouse_homeodomain_1	30	0	+	0	0	.
chr9	80552841	80552842	chr9:80552842:T:G	rs1328502	T	G	G	Msx3.mouse_homeodomain_1	10	1	-	9.18748416697267	7.649940343123835	CTAATTATTTAATCATTA
chr9	80581813	80581814	chr9:80581814:C:G	rs72747162	C	G	C	Msx3.mouse_homeodomain_1	7	1	+	8.688128435164597	8.96819944454576	CCAATAACAAGCCTATTA
chr9	80665198	80665199	chr9:80665199:A:G	rs2031870	A	G	A	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr9	80843123	80843124	chr9:80843124:C:T	rs7852601	C	T	C	Msx3.mouse_homeodomain_1	2	1	+	7.408291527450465	6.63545135070857	CTCATCATCATGCAATTG
chr9	80867048	80867049	chr9:80867049:C:T	rs72733909	C	T	C	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr9	80874480	80874481	chr9:80874481:A:G	rs7856994	A	G	A	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr9	80932228	80932229	chr9:80932229:C:T	rs11138922	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	9.165447095780742	8.341856351520562	CCAATTATTTAGAAATAA
chr9	81003409	81003410	chr9:81003410:G:A	rs10780489	G	A	G	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr9	81552825	81552826	chr9:81552826:A:G	rs12553156	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr9	81636345	81636346	chr9:81636346:A:C	rs942601065	A	C	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	82117173	82117174	chr9:82117174:A:G	rs1469933296	A	G	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr9	82820468	82820469	chr9:82820469:G:A	rs986486	G	A	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr9	82895065	82895066	chr9:82895066:C:T	rs143794248	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr9	82957354	82957355	chr9:82957355:G:A	rs116202033	G	A	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	83182535	83182536	chr9:83182536:G:A	rs79710147	G	A	G	Msx3.mouse_homeodomain_1	3	1	-	8.28130454978748	6.034128574172289	ATACTTAAATCGCAATTT
chr9	83239649	83239650	chr9:83239650:T:C	rs4460465	T	C	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr9	83501083	83501084	chr9:83501084:C:T	rs2889244	C	T	T	Msx3.mouse_homeodomain_1	23	0	-	0	0	.
chr9	83674544	83674545	chr9:83674545:T:C	rs7045761	T	C	T	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr9	84211956	84211957	chr9:84211957:C:A	rs7861108	C	A	A	Msx3.mouse_homeodomain_1	35	0	-	0	0	.
chr9	84704102	84704103	chr9:84704103:T:G	rs34121083	T	G	T	Msx3.mouse_homeodomain_1	3	1	-	9.138239943133325	6.258065578600424	TTAATAAAACTATAATTA
chr9	85743174	85743175	chr9:85743175:T:C	rs79656680	T	C	.	Msx3.mouse_homeodomain_1	10	1	+	8.368071365882212	7.324099066008496	CCAATAATAATGTAATAA
chr9	86591538	86591539	chr9:86591539:T:C	rs62572953	T	C	c	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr9	87179174	87179175	chr9:87179175:A:G	rs278663	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	87242764	87242765	chr9:87242765:T:C	rs6559972	T	C	T	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr9	87294383	87294384	chr9:87294384:A:G	rs7873742	A	G	A	Msx3.mouse_homeodomain_1	9	1	-	8.132645812121003	7.240556780049753	GTCATTAAATTCCCATTT
chr9	87497101	87497102	chr9:87497102:A:T	rs36228005	A	T	A	Msx3.mouse_homeodomain_1	2	1	+	9.386693324153732	6.231265705941113	ACACTTACAGCACAATTA
chr9	87569196	87569197	chr9:87569197:A:C	rs13284226	A	C	A	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr9	87580083	87580084	chr9:87580084:T:A	rs10435953	T	A	t	Msx3.mouse_homeodomain_1	7	1	+	7.968658051289268	9.028603645277926	GTAATAATCATGTCATTA
chr9	87581966	87581967	chr9:87581967:C:T	rs10435954	C	T	t	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr9	87590985	87590986	chr9:87590986:G:A	rs7029393	G	A	A	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr9	87710614	87710615	chr9:87710615:G:A	rs11141951	G	A	G	Msx3.mouse_homeodomain_1	36	0	-	0	0	.
chr9	87768166	87768167	chr9:87768167:T:G	rs4878121	T	G	T	Msx3.mouse_homeodomain_1	14	1	-	8.860682132801113	5.299703094546923	CCAATTACGCATCAATAA
chr9	88196288	88196289	chr9:88196289:G:T	rs2778028	G	T	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr9	88748051	88748052	chr9:88748052:C:G	rs149534137	C	G	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr9	88820067	88820068	chr9:88820068:T:C	rs9410364	T	C	T	Msx3.mouse_homeodomain_1	8	1	-	9.138160848672442	8.131611515827235	GCAGTAAAAAAGAAATTA
chr9	89012526	89012527	chr9:89012527:C:G	rs2316282	C	G	C	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr9	89160850	89160851	chr9:89160851:A:G	rs112267020	A	G	A	Msx3.mouse_homeodomain_1	-18	0	+	0	0	.
chr9	89529565	89529566	chr9:89529566:T:C	rs2498316	T	C	T	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr9	89551049	89551050	chr9:89551050:T:C	rs79764533	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	8.725516483325006	4.756085506956129	ACAATCATTAGCCAATCA
chr9	89567172	89567173	chr9:89567173:A:G	rs7022862	A	G	A	Msx3.mouse_homeodomain_1	-6	0	+	0	0	.
chr9	89908806	89908807	chr9:89908807:T:A	rs1026498990	T	A	T	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr9	89962277	89962278	chr9:89962278:G:A	rs55865562	G	A	A	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr9	89962279	89962280	chr9:89962280:T:C	rs7863792	T	C	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr9	90300269	90300270	chr9:90300270:T:G	rs1776986	T	G	T	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr9	90307363	90307364	chr9:90307364:G:C	rs10992912	G	C	G	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	90429992	90429993	chr9:90429993:C:T	rs10761373	C	T	C	Msx3.mouse_homeodomain_1	-9	0	+	0	0	.
chr9	90847490	90847491	chr9:90847491:T:C	rs2387337	T	C	T	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr9	91183314	91183315	chr9:91183315:G:A	rs62565760	G	A	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr9	91192786	91192787	chr9:91192787:G:T	rs142408183	G	T	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr9	91500650	91500651	chr9:91500651:A:G	chr9:91500651:A:G	A	G	A	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr9	91562912	91562913	chr9:91562913:G:A	rs61682107	G	A	G	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr9	92058974	92058975	chr9:92058975:T:C	rs7857759	T	C	T	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr9	92265153	92265154	chr9:92265154:A:G	rs10820963	A	G	A	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr9	92276410	92276411	chr9:92276411:G:A	chr9:92276411:G:A	G	A	G	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr9	92276423	92276424	chr9:92276424:T:A	rs17518754	T	A	A	Msx3.mouse_homeodomain_1	14	1	-	8.618952807183817	4.29219245583426	GTTATTTACCAGCAATTA
chr9	92879991	92879992	chr9:92879992:C:T	rs111452631	C	T	C	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr9	93194349	93194350	chr9:93194350:T:C	rs4744189	T	C	C	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr9	93280641	93280642	chr9:93280642:C:G	rs7042492	C	G	G	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr9	93475935	93475936	chr9:93475936:T:C	rs10821134	T	C	T	Msx3.mouse_homeodomain_1	14	1	-	9.862924163140118	5.274829944116969	GATATCAAATACCAATTA
chr9	93896042	93896043	chr9:93896043:G:A	rs10992966	G	A	G	Msx3.mouse_homeodomain_1	36	0	+	0	0	.
chr9	94055086	94055087	chr9:94055087:T:G	rs11789837	T	G	T	Msx3.mouse_homeodomain_1	16	1	+	7.179443957186469	2.1059111810771403	GTGAATAAAAGCCAATTA
chr9	94212019	94212020	chr9:94212020:C:T	rs16909728	C	T	C	Msx3.mouse_homeodomain_1	26	0	+	0	0	.
chr9	94742367	94742368	chr9:94742368:G:A	rs55795862	G	A	A	Msx3.mouse_homeodomain_1	21	0	-	0	0	.
chr9	94782637	94782638	chr9:94782638:A:C	rs6479567	A	C	A	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr9	95502659	95502660	chr9:95502660:A:C	rs28427480	A	C	A	Msx3.mouse_homeodomain_1	-13	0	-	0	0	.
chr9	95504087	95504088	chr9:95504088:A:G	rs4448343	A	G	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr9	95529570	95529571	chr9:95529571:A:T	rs76597087	A	T	A	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr9	95748855	95748856	chr9:95748856:T:C	rs700965	T	C	C	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	95832024	95832025	chr9:95832025:G:A	rs140940512	G	A	G	Msx3.mouse_homeodomain_1	-10	0	+	0	0	.
chr9	95832059	95832060	chr9:95832060:A:G	rs55699149	A	G	A	Msx3.mouse_homeodomain_1	25	0	+	0	0	.
chr9	95845706	95845707	chr9:95845707:G:T	rs2149564	G	T	T	Msx3.mouse_homeodomain_1	11	1	-	9.353095681928174	8.070679116042502	TTAATCAAATACCATTTA
chr9	95847872	95847873	chr9:95847873:G:A	rs12343734	G	A	G	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr9	96778426	96778427	chr9:96778427:G:A	rs12340602	G	A	G	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr9	97378746	97378747	chr9:97378747:A:G	rs7874652	A	G	A	Msx3.mouse_homeodomain_1	15	1	-	8.06179843039471	1.1543331934707033	CTGATTAAGGAATGATTA
chr9	97809159	97809160	chr9:97809160:T:C	rs7871887	T	C	T	Msx3.mouse_homeodomain_1	25	0	-	0	0	.
chr9	97903341	97903342	chr9:97903342:T:C	rs7020644	T	C	T	Msx3.mouse_homeodomain_1	5	1	+	7.46677079208637	5.073785049575873	GCAATTACAAATCAGTTT
chr9	97985562	97985563	chr9:97985563:C:T	rs974467147	C	T	C	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr9	98056028	98056029	chr9:98056029:C:T	rs574106550	C	T	C	Msx3.mouse_homeodomain_1	31	0	-	0	0	.
chr9	98056061	98056062	chr9:98056062:T:C	rs6478537	T	C	C	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr9	98406294	98406295	chr9:98406295:A:G	rs7020345	A	G	A	Msx3.mouse_homeodomain_1	20	0	-	0	0	.
chr9	98555638	98555639	chr9:98555639:C:T	rs2900512	C	T	T	Msx3.mouse_homeodomain_1	13	1	-	7.302340595036818	9.359614773943012	GTAATTAAAAGGCGGTTG
chr9	98749857	98749858	chr9:98749858:G:A	rs4742738	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr9	99001350	99001351	chr9:99001351:A:G	rs3780622	A	G	G	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	99318967	99318968	chr9:99318968:G:A	rs384317	G	A	G	Msx3.mouse_homeodomain_1	11	1	+	9.56590100334622	8.36894997817081	TCACTCAACTGGCAATTA
chr9	100087256	100087257	chr9:100087257:C:A	rs10988967	C	A	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr9	100438304	100438305	chr9:100438305:C:T	rs73655544	C	T	C	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr9	100438316	100438317	chr9:100438317:A:G	rs73655545	A	G	A	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr9	100724533	100724534	chr9:100724534:G:A	rs10989225	G	A	G	Msx3.mouse_homeodomain_1	8	1	+	8.221554827728639	9.22810416057385	ACAATTCTGAACCCATTA
chr9	100771721	100771722	chr9:100771722:A:G	rs1361252	A	G	G	Msx3.mouse_homeodomain_1	-18	0	-	0	0	.
chr9	100991185	100991186	chr9:100991186:G:T	chr9:100991186:G:T	G	T	G	Msx3.mouse_homeodomain_1	12	1	-	6.940259329481637	4.428950569712811	GTAATTCCTGACCAATCA
chr9	101991473	101991474	chr9:101991474:A:G	rs10820021	A	G	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr9	102016737	102016738	chr9:102016738:A:T	rs2995191	A	T	A	Msx3.mouse_homeodomain_1	2	1	+	8.213396044560334	5.057968426347715	ACAATTAAAAACCAAACA
chr9	102016746	102016747	chr9:102016747:C:G	rs138999117	C	G	C	Msx3.mouse_homeodomain_1	11	1	+	8.213396044560334	8.127930503850074	ACAATTAAAAACCAAACA
chr9	102050455	102050456	chr9:102050456:T:G	rs7847976	T	G	T	Msx3.mouse_homeodomain_1	28	0	-	0	0	.
chr9	102077273	102077274	chr9:102077274:T:G	rs320287	T	G	G	Msx3.mouse_homeodomain_1	4	1	+	8.780021114564843	3.122031862615143	GCCATAAATTTGAAATTA
chr9	102181392	102181393	chr9:102181393:C:T	rs320205	C	T	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr9	102224229	102224230	chr9:102224230:T:A	rs7866116	T	A	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr9	102746869	102746870	chr9:102746870:A:C	rs10820266	A	C	A	Msx3.mouse_homeodomain_1	0	1	+	8.11813877994262	8.859296825232754	ACAATTATAAGTCCATTG
chr9	102984418	102984419	chr9:102984419:A:G	rs1934995	A	G	A	Msx3.mouse_homeodomain_1	0	1	+	9.624503384914643	10.733012940079387	AGAATTAAAGAGTGATTA
chr9	103868809	103868810	chr9:103868810:G:A	rs7036142	G	A	g	Msx3.mouse_homeodomain_1	-1	0	+	0	0	.
chr9	104156220	104156221	chr9:104156221:G:C	rs10991127	G	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr9	104331724	104331725	chr9:104331725:G:A	rs4743710	G	A	A	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr9	104988474	104988475	chr9:104988475:C:T	rs10820753	C	T	T	Msx3.mouse_homeodomain_1	-2	0	+	0	0	.
chr9	105047046	105047047	chr9:105047047:A:G	rs34675985	A	G	G	Msx3.mouse_homeodomain_1	-19	0	-	0	0	.
chr9	105065137	105065138	chr9:105065138:G:A	rs35976759	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr9	105088601	105088602	chr9:105088602:T:C	rs7875182	T	C	T	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr9	105088653	105088654	chr9:105088654:T:C	rs6479294	T	C	T	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr9	105102232	105102233	chr9:105102233:T:C	rs4742940	T	C	T	Msx3.mouse_homeodomain_1	-4	0	+	0	0	.
chr9	105290396	105290397	chr9:105290397:A:T	rs327981	A	T	T	Msx3.mouse_homeodomain_1	-3	0	+	0	0	.
chr9	106513998	106513999	chr9:106513999:A:G	rs72738478	A	G	A	Msx3.mouse_homeodomain_1	-3	0	-	0	0	.
chr9	106883896	106883897	chr9:106883897:A:G	rs183726643	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr9	106890791	106890792	chr9:106890792:A:G	rs78834910	A	G	A	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	107260560	107260561	chr9:107260561:C:T	rs10816477	C	T	C	Msx3.mouse_homeodomain_1	-6	0	-	0	0	.
chr9	107379528	107379529	chr9:107379529:C:G	rs1771719	C	G	G	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr9	107379529	107379530	chr9:107379530:A:G	rs1746837	A	G	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr9	107548842	107548843	chr9:107548843:G:A	rs10122326	G	A	G	Msx3.mouse_homeodomain_1	-15	0	+	0	0	.
chr9	107705300	107705301	chr9:107705301:T:G	rs1330145	T	G	G	Msx3.mouse_homeodomain_1	-11	0	+	0	0	.
chr9	108358414	108358415	chr9:108358415:T:G	rs10979327	T	G	T	Msx3.mouse_homeodomain_1	9	1	-	7.3268209244145295	6.020590620470197	GCAATCAACATGCTATCA
chr9	108520907	108520908	chr9:108520908:T:C	rs10816679	T	C	T	Msx3.mouse_homeodomain_1	-4	0	-	0	0	.
chr9	108568144	108568145	chr9:108568145:A:G	rs7863962	A	G	G	Msx3.mouse_homeodomain_1	-14	0	+	0	0	.
chr9	108596363	108596364	chr9:108596364:C:T	rs2417866	C	T	T	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr9	108753054	108753055	chr9:108753055:C:A	rs10816712	C	A	C	Msx3.mouse_homeodomain_1	23	0	+	0	0	.
chr9	108812687	108812688	chr9:108812688:T:C	rs150424401	T	C	T	Msx3.mouse_homeodomain_1	2	1	-	8.156667480212299	5.639798852275221	GTAATTAAACAGAGCTTA
chr9	108844970	108844971	chr9:108844971:C:T	rs17801575	C	T	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	109082443	109082444	chr9:109082444:T:A	rs72760345	T	A	T	Msx3.mouse_homeodomain_1	16	1	+	11.2638650415247	7.379027114001642	TCAATCAGAAACCAATTG
chr9	109457193	109457194	chr9:109457194:C:G	rs3793524	C	G	G	Msx3.mouse_homeodomain_1	0	1	-	6.960270358793346	6.5929188489187345	GCCATCAGGAAGCAGTTA
chr9	110105528	110105529	chr9:110105529:A:G	rs77405629	A	G	A	Msx3.mouse_homeodomain_1	30	0	-	0	0	.
chr9	110777778	110777779	chr9:110777779:C:T	rs62571379	C	T	C	Msx3.mouse_homeodomain_1	0	1	+	9.294993442727614	8.471402698467434	CTAATTATAAAGGAATTT
chr9	110947766	110947767	chr9:110947767:G:A	rs10980654	G	A	A	Msx3.mouse_homeodomain_1	17	1	+	8.715755481707145	11.283915078890349	ACAATTACATACTCATTG
chr9	111233334	111233335	chr9:111233335:A:G	rs696728	A	G	G	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr9	111384405	111384406	chr9:111384406:C:T	rs12350482	C	T	C	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	111482125	111482126	chr9:111482126:T:C	rs10980910	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	8.318243515681267	5.193294362087414	GTACTTTTCTTCCAATTA
chr9	111632763	111632764	chr9:111632764:A:G	rs77520133	A	G	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr9	111662970	111662971	chr9:111662971:G:A	rs79430314	G	A	G	Msx3.mouse_homeodomain_1	32	0	-	0	0	.
chr9	111960379	111960380	chr9:111960380:C:T	rs2418184	C	T	T	Msx3.mouse_homeodomain_1	9	1	-	8.329505362651757	9.270049355037903	TCAATTATTGAGAAATTT
chr9	112377601	112377602	chr9:112377602:A:G	rs7858897	A	G	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	112378776	112378777	chr9:112378777:A:T	rs10115837	A	T	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	112549295	112549296	chr9:112549296:C:T	rs4978496	C	T	C	Msx3.mouse_homeodomain_1	1	1	+	8.030578804017185	7.182735933136498	TCAATAAAGTTCAGATTA
chr9	112549323	112549324	chr9:112549324:T:C	rs4979132	T	C	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr9	112711179	112711180	chr9:112711180:A:G	rs535078044	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.329089354402157	3.7409951353790074	CCTCTTAAAAAAAAATTA
chr9	112925427	112925428	chr9:112925428:G:A	rs77653914	G	A	G	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr9	112925454	112925455	chr9:112925455:T:C	rs10817408	T	C	T	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr9	113150610	113150611	chr9:113150611:G:A	rs1033201201	G	A	G	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr9	113500989	113500990	chr9:113500990:G:A	rs7020623	G	A	G	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr9	113585983	113585984	chr9:113585984:G:A	rs112323557	G	A	G	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr9	113660383	113660384	chr9:113660384:C:A	rs10981874	C	A	C	Msx3.mouse_homeodomain_1	28	0	+	0	0	.
chr9	113782125	113782126	chr9:113782126:T:G	rs10981922	T	G	T	Msx3.mouse_homeodomain_1	11	1	+	7.521895901671308	9.146660779944753	CCACTTGTGACTCAATTA
chr9	113974019	113974020	chr9:113974020:T:A	rs73658310	T	A	T	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr9	114642498	114642499	chr9:114642499:A:G	rs7041824	A	G	G	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr9	114804856	114804857	chr9:114804857:T:C	rs7862325	T	C	C	Msx3.mouse_homeodomain_1	-16	0	+	0	0	.
chr9	114824128	114824129	chr9:114824129:G:T	rs1407306	G	T	G	Msx3.mouse_homeodomain_1	11	1	-	8.687752902000934	7.405336336115263	TCAATTAAAAACCAAATG
chr9	114898893	114898894	chr9:114898894:A:G	rs112829391	A	G	A	Msx3.mouse_homeodomain_1	14	1	+	8.415783962612085	3.8276897435889334	TCAATAATCTTGCAATCA
chr9	115182455	115182456	chr9:115182456:G:C	rs10982596	G	C	C	Msx3.mouse_homeodomain_1	-15	0	-	0	0	.
chr9	115380789	115380790	chr9:115380790:C:T	rs6478161	C	T	T	Msx3.mouse_homeodomain_1	27	0	+	0	0	.
chr9	115438508	115438509	chr9:115438509:T:C	rs2188046	T	C	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr9	115596210	115596211	chr9:115596211:G:A	rs75223553	G	A	G	Msx3.mouse_homeodomain_1	22	0	-	0	0	.
chr9	116328464	116328465	chr9:116328465:T:C	rs17301196	T	C	C	Msx3.mouse_homeodomain_1	12	1	-	7.454742222382618	6.466667963535284	CCCATTGCTGACAAATTA
chr9	116849748	116849749	chr9:116849749:C:T	rs1326814	C	T	C	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr9	117184367	117184368	chr9:117184368:A:C	rs10983564	A	C	A	Msx3.mouse_homeodomain_1	2	1	+	8.696391167214088	6.313803725743365	CCAATCAGGCAGCACTTA
chr9	117265633	117265634	chr9:117265634:C:T	rs7857268	C	T	C	Msx3.mouse_homeodomain_1	-19	0	+	0	0	.
chr9	117352040	117352041	chr9:117352041:C:T	rs7871617	C	T	T	Msx3.mouse_homeodomain_1	-20	0	-	0	0	.
chr9	117757998	117757999	chr9:117757999:T:C	rs7026522	T	C	C	Msx3.mouse_homeodomain_1	16	1	+	8.89007619879693	5.765127045203076	GTCATTAGGCCCTAATTA
chr9	117796732	117796733	chr9:117796733:T:C	rs10115586	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.271600839189875	3.3021698628209992	ATAATTCAGAGGCCATTA
chr9	118121557	118121558	chr9:118121558:C:T	rs721737	C	T	T	Msx3.mouse_homeodomain_1	-13	0	+	0	0	.
chr9	118325724	118325725	chr9:118325725:T:A	rs7040056	T	A	A	Msx3.mouse_homeodomain_1	2	1	-	7.163099217398337	4.007671599185717	TTACTTGGGCTGCAATTA
chr9	119157744	119157745	chr9:119157745:C:G	rs768568557	C	G	C	Msx3.mouse_homeodomain_1	19	0	-	0	0	.
chr9	119303231	119303232	chr9:119303232:C:T	rs10984472	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	8.420236181214596	8.3025325326896	ACAATAAACCTGCAATTT
chr9	120441811	120441812	chr9:120441812:G:A	rs753671671	G	A	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr9	120580672	120580673	chr9:120580673:T:C	rs767288533	T	C	T	Msx3.mouse_homeodomain_1	3	1	-	7.4629817375473175	3.4935507611784384	GTAATAAAAGACCAATAG
chr9	120842484	120842485	chr9:120842485:A:G	rs113793562	A	G	G	Msx3.mouse_homeodomain_1	1	1	-	8.700494291327914	9.5483371622086	TTCATCAAATAGAAATTA
chr9	121261850	121261851	chr9:121261851:C:A	rs4837826	C	A	C	Msx3.mouse_homeodomain_1	1	1	-	7.472505369848155	9.889011355995784	AGAATTATGGGGAAATTA
chr9	121285554	121285555	chr9:121285555:T:C	rs118045190	T	C	T	Msx3.mouse_homeodomain_1	16	1	+	12.031753470081824	8.906804316487971	GAAATTAAAAAAAAATTA
chr9	121474789	121474790	chr9:121474790:T:G	rs16910651	T	G	T	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr9	121884698	121884699	chr9:121884699:A:C	rs35914251	A	C	A	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	122031917	122031918	chr9:122031918:T:G	rs533897465	T	G	T	Msx3.mouse_homeodomain_1	15	1	+	8.273049606175821	1.3655843692518146	GCTATAAAACAGCCATTA
chr9	122084318	122084319	chr9:122084319:T:G	rs12003548	T	G	G	Msx3.mouse_homeodomain_1	1	1	+	9.325579451214725	6.909073465067096	GTACTTATAAAGCATTTA
chr9	122468872	122468873	chr9:122468873:C:A	rs35133055	C	A	C	Msx3.mouse_homeodomain_1	18	0	+	0	0	.
chr9	123835042	123835043	chr9:123835043:A:G	rs548289812	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	10.091250844525653	3.9927051646565213	GCGATTGATTTGTAATTA
chr9	124020824	124020825	chr9:124020825:C:T	rs2025952	C	T	T	Msx3.mouse_homeodomain_1	18	0	-	0	0	.
chr9	124163827	124163828	chr9:124163828:T:C	rs2807580	T	C	T	Msx3.mouse_homeodomain_1	4	1	+	6.506422416806049	0.4078767369369143	CCAATTGGGGAGGAATTG
chr9	124183063	124183064	chr9:124183064:C:A	rs78984687	C	A	C	Msx3.mouse_homeodomain_1	32	0	+	0	0	.
chr9	124190318	124190319	chr9:124190319:G:T	rs75883516	G	T	G	Msx3.mouse_homeodomain_1	24	0	-	0	0	.
chr9	124754404	124754405	chr9:124754405:C:T	rs112421270	C	T	C	Msx3.mouse_homeodomain_1	11	1	-	8.699474565414516	7.502523540239104	ATCCTTAAAAGGTAATTA
chr9	124834531	124834532	chr9:124834532:A:C	rs4836999	A	C	C	Msx3.mouse_homeodomain_1	34	0	-	0	0	.
chr9	124834532	124834533	chr9:124834533:G:A	rs4837000	G	A	G	Msx3.mouse_homeodomain_1	33	0	-	0	0	.
chr9	124834575	124834576	chr9:124834576:A:G	rs118164758	A	G	A	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	125166455	125166456	chr9:125166456:T:C	rs10986600	T	C	T	Msx3.mouse_homeodomain_1	-17	0	+	0	0	.
chr9	125495637	125495638	chr9:125495638:C:G	rs4837017	C	G	G	Msx3.mouse_homeodomain_1	-11	0	-	0	0	.
chr9	125890359	125890360	chr9:125890360:T:C	rs12237488	T	C	C	Msx3.mouse_homeodomain_1	-14	0	-	0	0	.
chr9	125931800	125931801	chr9:125931801:A:G	rs17267617	A	G	A	Msx3.mouse_homeodomain_1	-2	0	-	0	0	.
chr9	126024529	126024530	chr9:126024530:G:A	rs34961104	G	A	G	Msx3.mouse_homeodomain_1	37	0	-	0	0	.
chr9	126151792	126151793	chr9:126151793:T:C	rs112137146	T	C	T	Msx3.mouse_homeodomain_1	10	1	-	7.611581046749639	6.534989875813165	ATAATGAAGGACCAATTG
chr9	126241981	126241982	chr9:126241982:C:T	rs2773388	C	T	T	Msx3.mouse_homeodomain_1	11	1	-	8.03176847681847	6.834817451643061	TTGATTACATCGAAATTA
chr9	126298937	126298938	chr9:126298938:A:G	rs1999201	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	9.590873941974273	3.492328262105141	CCAATAATTATTTAATTA
chr9	126348666	126348667	chr9:126348667:A:C	rs35428354	A	C	A	Msx3.mouse_homeodomain_1	3	1	+	8.03378207529968	5.15360771076678	ATAATGAAACGTCAATTA
chr9	126397603	126397604	chr9:126397604:G:A	rs2052156	G	A	A	Msx3.mouse_homeodomain_1	0	1	-	9.74462324686294	8.921032502602763	CTAATGAACATTCAATTA
chr9	126440938	126440939	chr9:126440939:A:G	rs16929015	A	G	A	Msx3.mouse_homeodomain_1	1	1	-	7.184052241242955	8.031895112123642	CTAATCAGCACACCATTA
chr9	126634734	126634735	chr9:126634735:C:T	rs10448285	C	T	C	Msx3.mouse_homeodomain_1	12	1	+	8.271324922225386	6.826202258658902	TTAATTTTGTAGCGATTA
chr9	126671513	126671514	chr9:126671514:A:C	rs78119880	A	C	A	Msx3.mouse_homeodomain_1	-1	0	-	0	0	.
chr9	126676995	126676996	chr9:126676996:C:T	rs79320612	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr9	127665134	127665135	chr9:127665135:A:G	rs17849179	A	G	G	Msx3.mouse_homeodomain_1	37	0	+	0	0	.
chr9	128046164	128046165	chr9:128046165:T:C	rs10819341	T	C	T	Msx3.mouse_homeodomain_1	0	1	+	8.374785599534633	9.198376343794813	TCCATCAATATGCAATTG
chr9	128046173	128046174	chr9:128046174:A:G	rs184429601	A	G	A	Msx3.mouse_homeodomain_1	9	1	+	8.374785599534633	7.434241607148489	TCCATCAATATGCAATTG
chr9	128046198	128046199	chr9:128046199:T:C	rs73607977	T	C	C	Msx3.mouse_homeodomain_1	34	0	+	0	0	.
chr9	128507756	128507757	chr9:128507757:C:T	rs536271864	C	T	C	Msx3.mouse_homeodomain_1	33	0	+	0	0	.
chr9	129310366	129310367	chr9:129310367:C:T	rs7867597	C	T	C	Msx3.mouse_homeodomain_1	29	0	+	0	0	.
chr9	129680971	129680972	chr9:129680972:G:A	rs7862417	G	A	A	Msx3.mouse_homeodomain_1	19	0	+	0	0	.
chr9	129743140	129743141	chr9:129743141:C:T	rs58808915	C	T	C	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr9	130267598	130267599	chr9:130267599:C:A	rs10819627	C	A	C	Msx3.mouse_homeodomain_1	12	1	+	8.043929612107885	5.5326208523390585	TTAATCACAATACCATTA
chr9	130780949	130780950	chr9:130780950:T:A	rs182045111	T	A	T	Msx3.mouse_homeodomain_1	29	0	-	0	0	.
chr9	131238018	131238019	chr9:131238019:T:G	rs77450128	T	G	T	Msx3.mouse_homeodomain_1	13	1	-	9.415692716005607	6.531499659528231	ACTATTACAAAGCAATTT
chr9	131275394	131275395	chr9:131275395:A:G	rs7856661	A	G	A	Msx3.mouse_homeodomain_1	4	1	-	6.896452900862475	0.7979072209933409	GCGATTGGGCCTCAATTA
chr9	131361760	131361761	chr9:131361761:G:A	rs10901052	G	A	G	Msx3.mouse_homeodomain_1	13	1	+	6.9100075993502275	8.967281778256424	ACAGTTAACAACCGCTTA
chr9	131475259	131475260	chr9:131475260:T:C	rs10793873	T	C	C	Msx3.mouse_homeodomain_1	27	0	-	0	0	.
chr9	131983094	131983095	chr9:131983095:C:T	rs7032884	C	T	C	Msx3.mouse_homeodomain_1	8	1	+	12.171369905812952	12.053666257287958	GTAATTAACGAGCACTTA
chr9	132269335	132269336	chr9:132269336:C:T	rs2274562	C	T	T	Msx3.mouse_homeodomain_1	-16	0	-	0	0	.
chr9	133142768	133142769	chr9:133142769:T:C	rs11244009	T	C	C	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr9	133142802	133142803	chr9:133142803:C:T	rs111821340	C	T	C	Msx3.mouse_homeodomain_1	22	0	+	0	0	.
chr9	133761644	133761645	chr9:133761645:T:C	rs35784837	T	C	T	Msx3.mouse_homeodomain_1	-7	0	+	0	0	.
chr9	133869651	133869652	chr9:133869652:C:T	rs61034217	C	T	T	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	134164223	134164224	chr9:134164224:A:G	rs28398408	A	G	G	Msx3.mouse_homeodomain_1	-20	0	+	0	0	.
chr9	134164274	134164275	chr9:134164275:G:A	rs184338483	G	A	G	Msx3.mouse_homeodomain_1	31	0	+	0	0	.
chr9	134517094	134517095	chr9:134517095:G:A	rs4842022	G	A	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr9	134662833	134662834	chr9:134662834:G:C	rs10046876	G	C	G	Msx3.mouse_homeodomain_1	-10	0	-	0	0	.
chr9	135010392	135010393	chr9:135010393:C:T	rs73664008	C	T	c	Msx3.mouse_homeodomain_1	-5	0	-	0	0	.
chr9	135513810	135513811	chr9:135513811:C:T	rs12340689	C	T	T	Msx3.mouse_homeodomain_1	-12	0	+	0	0	.
chr9	137293772	137293773	chr9:137293773:A:G	rs7850758	A	G	A	Msx3.mouse_homeodomain_1	-9	0	-	0	0	.
chr9	137293780	137293781	chr9:137293781:C:A	chr9:137293781:C:A	C	A	c	Msx3.mouse_homeodomain_1	-17	0	-	0	0	.
chr9	137873292	137873293	chr9:137873293:T:C	rs7025557	T	C	T	Msx3.mouse_homeodomain_1	20	0	+	0	0	.
chr9	138016356	138016357	chr9:138016357:G:A	rs78950305	G	A	G	Msx3.mouse_homeodomain_1	-7	0	-	0	0	.