chr1	778896	778897	chr1:778897:C:A	rs138660747	C	A	.	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr1	778905	778906	chr1:778906:G:T	chr1:778906:G:T	G	T	.	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr1	903174	903175	chr1:903175:C:A	rs4970383	C	A	a	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	933922	933923	chr1:933923:C:T	rs113171913	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr1	1230919	1230920	chr1:1230920:G:C	rs145762416	G	C	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr1	1847736	1847737	chr1:1847737:G:A	rs75713516	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr1	1976115	1976116	chr1:1976116:C:T	rs545428956	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr1	2970316	2970317	chr1:2970317:G:T	chr1:2970317:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	5.516288901640307	GTCGTTAAA
chr1	2980219	2980220	chr1:2980220:G:A	rs60402802	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr1	3248702	3248703	chr1:3248703:A:C	rs4648462	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	8.420043757940196	5.254136976905022	GTCATAAAA
chr1	3323634	3323635	chr1:3323635:G:A	rs870465	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	3353251	3353252	chr1:3353252:C:G	rs538438215	C	G	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	4.507431515880895	CTCGTAAAC
chr1	3553594	3553595	chr1:3553595:C:T	rs137918899	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr1	3780572	3780573	chr1:3780573:G:T	rs8520	G	T	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr1	3841184	3841185	chr1:3841185:G:A	rs12744607	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr1	4359393	4359394	chr1:4359394:C:T	rs349394	C	T	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr1	4641197	4641198	chr1:4641198:T:C	rs10915575	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr1	4853082	4853083	chr1:4853083:C:T	rs6426439	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr1	5551758	5551759	chr1:5551759:A:G	rs2211416	A	G	A	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr1	5622862	5622863	chr1:5622863:G:A	rs999413	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr1	6271298	6271299	chr1:6271299:C:T	rs113150972	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr1	6288983	6288984	chr1:6288984:G:A	rs61760847	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr1	6465947	6465948	chr1:6465948:A:G	rs3007416	A	G	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr1	6783867	6783868	chr1:6783868:A:C	rs17029843	A	C	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr1	7274679	7274680	chr1:7274680:C:T	rs4481876	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr1	7334559	7334560	chr1:7334560:C:T	rs114834535	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	7341712	7341713	chr1:7341713:G:A	rs148222568	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	7489679	7489680	chr1:7489680:A:G	rs12091424	A	G	A	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr1	7827518	7827519	chr1:7827519:C:G	rs228697	C	G	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr1	8057506	8057507	chr1:8057507:C:T	rs61748617	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr1	8641692	8641693	chr1:8641693:T:G	rs17032724	T	G	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr1	9403194	9403195	chr1:9403195:A:T	rs7414873	A	T	T	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr1	9683670	9683671	chr1:9683671:G:A	rs4846192	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr1	10034486	10034487	chr1:10034487:A:C	rs75644910	A	C	a	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr1	10034488	10034489	chr1:10034489:A:C	rs1053732905	A	C	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr1	11034981	11034982	chr1:11034982:C:T	rs6695096	C	T	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr1	11456463	11456464	chr1:11456464:C:T	rs11577773	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr1	11926477	11926478	chr1:11926478:G:A	rs61776480	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr1	12088543	12088544	chr1:12088544:G:A	rs142901255	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr1	14262793	14262794	chr1:14262794:C:T	rs774003296	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr1	14498988	14498989	chr1:14498989:T:C	rs10754858	T	C	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr1	15003803	15003804	chr1:15003804:C:T	rs10803338	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.124010147682185	6.73017029686311	GCCGTAAAA
chr1	15245636	15245637	chr1:15245637:A:G	rs1752020	A	G	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr1	15806809	15806810	chr1:15806810:G:A	rs556687340	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr1	16102042	16102043	chr1:16102043:T:C	rs61769920	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	7.238869377514717	GTCATAAAA
chr1	16167944	16167945	chr1:16167945:G:T	rs111822950	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	16349948	16349949	chr1:16349949:T:C	rs55687829	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr1	16773704	16773705	chr1:16773705:C:T	rs2610646	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr1	16773724	16773725	chr1:16773725:T:C	rs1312038692	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr1	16896772	16896773	chr1:16896773:C:A	rs184459522	C	A	.	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr1	16896806	16896807	chr1:16896807:A:G	rs570764105	A	G	.	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr1	16904495	16904496	chr1:16904496:A:G	rs565881593	A	G	.	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	16904517	16904518	chr1:16904518:C:G	rs74508575	C	G	.	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	16904523	16904524	chr1:16904524:G:A	rs1260912432	G	A	.	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr1	17233180	17233181	chr1:17233181:G:A	rs3750297	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr1	17285624	17285625	chr1:17285625:C:T	rs72646795	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr1	17369053	17369054	chr1:17369054:G:A	rs12756835	G	A	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr1	17697194	17697195	chr1:17697195:A:G	rs2270976	A	G	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr1	18100592	18100593	chr1:18100593:G:T	rs77261738	G	T	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	18100650	18100651	chr1:18100651:A:G	rs9659104	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr1	18153517	18153518	chr1:18153518:A:G	rs9662795	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr1	18333838	18333839	chr1:18333839:C:T	rs74058112	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr1	18599337	18599338	chr1:18599338:G:A	rs113478438	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	18751708	18751709	chr1:18751709:G:A	rs78431755	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	18934746	18934747	chr1:18934747:G:A	rs992660	G	A	g	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr1	19058247	19058248	chr1:19058248:C:T	rs34947428	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr1	19351723	19351724	chr1:19351724:A:G	rs12128747	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	6.813774389185489	CTCATAAAA
chr1	19457191	19457192	chr1:19457192:T:C	rs76006991	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr1	19550287	19550288	chr1:19550288:G:A	rs1961781	G	A	g	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr1	21247106	21247107	chr1:21247107:G:C	rs12742244	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr1	21247109	21247110	chr1:21247110:C:T	rs212513	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr1	22113116	22113117	chr1:22113117:C:T	rs115805722	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr1	22182428	22182429	chr1:22182429:C:T	rs2807370	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	23188459	23188460	chr1:23188460:T:C	rs683052	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr1	23463422	23463423	chr1:23463423:C:T	rs115923592	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr1	23778408	23778409	chr1:23778409:G:T	rs934815451	G	T	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	24289750	24289751	chr1:24289751:C:T	rs6686708	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	24605434	24605435	chr1:24605435:G:C	rs74062036	G	C	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr1	24605447	24605448	chr1:24605448:A:C	rs74062038	A	C	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr1	24739956	24739957	chr1:24739957:T:C	rs3131502	T	C	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr1	24897919	24897920	chr1:24897920:A:G	rs7522097	A	G	G	Hoxd9.mouse_homeodomain_3	6	1	+	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr1	24897920	24897921	chr1:24897921:A:G	rs7522098	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.911344677288588	1.0429021156919922	GTTGTAAAA
chr1	25197696	25197697	chr1:25197697:G:A	rs12067932	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr1	25615425	25615426	chr1:25615426:G:A	rs1028636813	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr1	25615444	25615445	chr1:25615445:G:T	rs3754168	G	T	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr1	26121955	26121956	chr1:26121956:A:G	rs17257107	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	27605900	27605901	chr1:27605901:G:T	rs75793099	G	T	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr1	28091526	28091527	chr1:28091527:A:G	rs111228690	A	G	a	Hoxd9.mouse_homeodomain_3	0	1	+	8.69304884965439	9.305184528107661	ATCGTAAAA
chr1	28375755	28375756	chr1:28375756:C:T	chr1:28375756:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	28594686	28594687	chr1:28594687:A:C	rs4654341	A	C	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr1	30596918	30596919	chr1:30596919:T:C	rs12125743	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr1	30727447	30727448	chr1:30727448:C:T	rs60114151	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr1	31224436	31224437	chr1:31224437:A:G	rs2377732	A	G	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr1	31802735	31802736	chr1:31802736:C:A	rs78230117	C	A	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr1	31935235	31935236	chr1:31935236:G:A	rs779501864	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr1	33443875	33443876	chr1:33443876:A:G	rs7519108	A	G	G	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	7.238869377514717	GTCATAAAA
chr1	34684572	34684573	chr1:34684573:T:C	rs618675	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.911344677288588	6.408276024533114	GTTGTAAAA
chr1	34813090	34813091	chr1:34813091:C:T	rs6680115	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.176266619256224	6.291125849088757	GGCGTAAAA
chr1	36732118	36732119	chr1:36732119:T:C	rs6425998	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr1	37023544	37023545	chr1:37023545:G:A	rs149471618	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr1	37355989	37355990	chr1:37355990:C:A	rs556530463	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr1	37438980	37438981	chr1:37438981:A:G	rs72657756	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr1	37499702	37499703	chr1:37499703:C:T	rs12754089	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr1	37898416	37898417	chr1:37898417:T:C	rs9728268	T	C	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr1	38153870	38153871	chr1:38153871:A:G	rs748955	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr1	38898944	38898945	chr1:38898945:G:A	rs4970634	G	A	a	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr1	39165246	39165247	chr1:39165247:T:G	rs16825863	T	G	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	6.2381582116456675	GTCATAAAA
chr1	39693155	39693156	chr1:39693156:C:T	rs546422	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr1	40280378	40280379	chr1:40280379:C:T	rs143825774	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr1	41316321	41316322	chr1:41316322:A:G	rs28541673	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	41481511	41481512	chr1:41481512:C:T	rs146774411	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.662713508931605	6.268873658112532	CTCGTAAAC
chr1	41897449	41897450	chr1:41897450:G:A	rs55845589	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	43636095	43636096	chr1:43636096:T:G	rs11210893	T	G	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr1	43666839	43666840	chr1:43666840:A:C	rs191578502	A	C	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr1	43708273	43708274	chr1:43708274:A:G	rs72884935	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr1	44154931	44154932	chr1:44154932:C:T	rs144844307	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr1	44238195	44238196	chr1:44238196:C:T	rs78521986	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr1	44584374	44584375	chr1:44584375:T:C	rs270709	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr1	45403361	45403362	chr1:45403362:G:C	rs75033831	G	C	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	45549484	45549485	chr1:45549485:A:G	rs11211138	A	G	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr1	47651177	47651178	chr1:47651178:G:A	rs75369137	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr1	47652515	47652516	chr1:47652516:T:C	rs12407853	T	C	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr1	47727749	47727750	chr1:47727750:G:A	rs12094870	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr1	47964175	47964176	chr1:47964176:G:A	rs1000873574	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr1	47986508	47986509	chr1:47986509:A:G	rs550684778	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr1	48337067	48337068	chr1:48337068:C:A	rs11205475	C	A	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr1	51093717	51093718	chr1:51093718:A:T	rs76894965	A	T	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	51643124	51643125	chr1:51643125:C:T	rs7555392	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	8.420043757940196	GTCGTAAAA
chr1	52574476	52574477	chr1:52574477:G:T	rs10158859	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr1	52635876	52635877	chr1:52635877:G:C	rs669219	G	C	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	4.221738893972249	CTCGTAAAG
chr1	52637610	52637611	chr1:52637611:A:G	rs4926921	A	G	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr1	53580882	53580883	chr1:53580883:T:C	rs941129	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr1	53878608	53878609	chr1:53878609:C:A	rs2272928	C	A	A	Hoxd9.mouse_homeodomain_3	1	1	+	7.698915159352956	6.327154529495298	CCCGTAAAA
chr1	54052094	54052095	chr1:54052095:T:C	rs115011183	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	54404182	54404183	chr1:54404183:G:A	rs924876478	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr1	54404206	54404207	chr1:54404207:C:T	rs1054628008	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr1	54697050	54697051	chr1:54697051:G:A	rs12131848	G	A	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	54697058	54697059	chr1:54697059:C:T	rs12116922	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	7.299208998835316	ATCGTAAAA
chr1	54764289	54764290	chr1:54764290:C:G	rs1038199899	C	G	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr1	56202490	56202491	chr1:56202491:G:A	rs1149650	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr1	56214922	56214923	chr1:56214923:T:G	rs1149651	T	G	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr1	56745445	56745446	chr1:56745446:T:C	rs12137030	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr1	56799914	56799915	chr1:56799915:C:A	rs11206919	C	A	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr1	56931627	56931628	chr1:56931628:G:A	rs683824	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr1	57157026	57157027	chr1:57157027:A:C	rs10889026	A	C	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr1	58699527	58699528	chr1:58699528:C:T	rs115255736	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr1	59336858	59336859	chr1:59336859:A:G	rs35620078	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr1	59443043	59443044	chr1:59443044:T:A	rs12076674	T	A	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr1	59470733	59470734	chr1:59470734:T:G	rs2407515	T	G	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	5.7824267684371495	GTTGTAAAA
chr1	59470750	59470751	chr1:59470751:A:G	rs999268	A	G	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr1	59573136	59573137	chr1:59573137:C:A	rs138659057	C	A	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	59609352	59609353	chr1:59609353:A:C	rs12063049	A	C	a	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr1	60983709	60983710	chr1:60983710:C:T	rs76735091	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr1	61133449	61133450	chr1:61133450:T:G	rs10789092	T	G	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	5.724807546727723	CTCATAAAA
chr1	61255636	61255637	chr1:61255637:C:T	rs771017543	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr1	61638631	61638632	chr1:61638632:T:C	rs547875153	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr1	61754662	61754663	chr1:61754663:T:C	rs1286697	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	61754670	61754671	chr1:61754671:C:G	rs138444151	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	0.8168533941188024	CTCGTAAAG
chr1	61804821	61804822	chr1:61804822:G:A	rs1286830	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr1	63918103	63918104	chr1:63918104:G:A	rs113386566	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr1	63918111	63918112	chr1:63918112:C:T	rs72683074	C	T	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr1	63918147	63918148	chr1:63918148:G:A	rs56157811	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr1	64043441	64043442	chr1:64043442:A:C	rs705534	A	C	C	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	7.202667727093368	GTCATAAAA
chr1	64387900	64387901	chr1:64387901:G:A	rs79428204	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr1	64387905	64387906	chr1:64387906:G:A	rs72671334	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr1	65297058	65297059	chr1:65297059:T:C	rs10889536	T	C	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	65491653	65491654	chr1:65491654:G:A	rs1327121	G	A	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr1	65696619	65696620	chr1:65696620:G:A	rs61780861	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr1	65696676	65696677	chr1:65696677:G:A	rs61780862	G	A	g	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr1	65696685	65696686	chr1:65696686:C:T	rs61780863	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr1	65868853	65868854	chr1:65868854:A:G	rs1937460	A	G	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr1	66763247	66763248	chr1:66763248:C:T	rs7530784	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.124010147682185	6.73017029686311	GCCGTAAAA
chr1	67264944	67264945	chr1:67264945:G:T	rs10789230	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr1	67326641	67326642	chr1:67326642:G:T	rs183241753	G	T	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr1	68307491	68307492	chr1:68307492:T:A	rs9436373	T	A	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr1	68307513	68307514	chr1:68307514:G:T	rs72672512	G	T	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr1	68492433	68492434	chr1:68492434:T:C	rs60555793	T	C	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr1	68820033	68820034	chr1:68820034:T:C	rs146912890	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr1	69089070	69089071	chr1:69089071:C:T	rs9783039	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr1	69994445	69994446	chr1:69994446:T:G	rs12024870	T	G	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr1	70837928	70837929	chr1:70837929:G:T	rs7515193	G	T	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr1	70891153	70891154	chr1:70891154:C:T	rs4650093	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr1	71553033	71553034	chr1:71553034:G:A	rs147865321	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr1	72063943	72063944	chr1:72063944:G:A	rs17092314	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr1	72283915	72283916	chr1:72283916:G:C	rs6661230	G	C	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr1	72539875	72539876	chr1:72539876:A:G	rs75290324	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr1	75129465	75129466	chr1:75129466:C:T	rs11162571	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr1	75887550	75887551	chr1:75887551:G:A	rs79324496	G	A	g	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr1	75887562	75887563	chr1:75887563:G:A	rs12127049	G	A	g	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr1	76586439	76586440	chr1:76586440:G:A	rs315037	G	A	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr1	76668205	76668206	chr1:76668206:C:T	rs72680027	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr1	77187103	77187104	chr1:77187104:A:G	rs1779188	A	G	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	77189868	77189869	chr1:77189869:C:T	rs71658785	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr1	77219609	77219610	chr1:77219610:G:A	rs528824837	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr1	78254659	78254660	chr1:78254660:G:A	rs74568553	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	78323311	78323312	chr1:78323312:A:T	rs11162466	A	T	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr1	79042465	79042466	chr1:79042466:C:T	rs1332817	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.124010147682185	6.73017029686311	GCCGTAAAA
chr1	79468844	79468845	chr1:79468845:C:T	rs7536365	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	8.880089539778433	4.483892661742424	CTCGTAAAA
chr1	79603986	79603987	chr1:79603987:A:G	rs78216346	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr1	80914399	80914400	chr1:80914400:G:A	rs1415930	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	6.906634116835357	6.021493346667889	GCCGTAAAC
chr1	80978894	80978895	chr1:80978895:A:G	rs4650502	A	G	A	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr1	81679886	81679887	chr1:81679887:G:A	rs9661521	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr1	81968541	81968542	chr1:81968542:C:T	rs17431038	C	T	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr1	82028547	82028548	chr1:82028548:C:T	rs6598982	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	82888322	82888323	chr1:82888323:G:A	rs427393	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr1	82991772	82991773	chr1:82991773:T:C	rs539117349	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	83007983	83007984	chr1:83007984:C:G	rs12126549	C	G	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr1	83528125	83528126	chr1:83528126:A:G	chr1:83528126:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr1	83763586	83763587	chr1:83763587:G:T	rs77817037	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	6.658390371099818	GTCATAAAA
chr1	83950315	83950316	chr1:83950316:G:C	chr1:83950316:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr1	84171119	84171120	chr1:84171120:T:G	rs12565896	T	G	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr1	84668601	84668602	chr1:84668602:A:C	rs3768243	A	C	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	84749164	84749165	chr1:84749165:A:G	rs4405148	A	G	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr1	84821188	84821189	chr1:84821189:T:C	rs138228924	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr1	84913251	84913252	chr1:84913252:A:T	rs187097265	A	T	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr1	85014803	85014804	chr1:85014804:G:A	rs118150353	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr1	86423443	86423444	chr1:86423444:C:T	rs12747430	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr1	86518823	86518824	chr1:86518824:G:A	rs1321685	G	A	g	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr1	86523418	86523419	chr1:86523419:A:C	rs115614020	A	C	a	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	86523421	86523422	chr1:86523422:G:A	rs114156296	G	A	g	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	86715001	86715002	chr1:86715002:T:C	rs1374870439	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr1	87427448	87427449	chr1:87427449:G:A	rs2152735	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr1	87684661	87684662	chr1:87684662:C:T	rs78606214	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	87930247	87930248	chr1:87930248:C:T	rs17130216	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr1	88037686	88037687	chr1:88037687:G:C	rs72716779	G	C	c	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	6.149902535056951	GTCGTAAAA
chr1	88192463	88192464	chr1:88192464:T:C	rs10801874	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr1	88878994	88878995	chr1:88878995:T:C	rs61766108	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr1	89127353	89127354	chr1:89127354:G:T	rs61798958	G	T	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr1	89635924	89635925	chr1:89635925:A:G	rs558603189	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr1	90414091	90414092	chr1:90414092:C:T	rs4642875	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr1	91705862	91705863	chr1:91705863:A:T	rs3754014	A	T	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr1	91879983	91879984	chr1:91879984:C:A	rs2799510	C	A	A	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	3.5987518915749583	GTCATAAAA
chr1	92133249	92133250	chr1:92133250:T:A	rs1157470	T	A	A	Hoxd9.mouse_homeodomain_3	6	1	-	8.420043757940196	5.604333924062047	GTCATAAAA
chr1	93080257	93080258	chr1:93080258:A:C	chr1:93080258:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.911344677288588	5.729459130994061	GTTGTAAAA
chr1	93785900	93785901	chr1:93785901:A:G	rs11164994	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr1	93814021	93814022	chr1:93814022:G:A	rs138187179	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr1	93848597	93848598	chr1:93848598:T:C	rs78969815	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.014132140725302	6.832957760299826	GTCGTAAAT
chr1	93848598	93848599	chr1:93848599:C:T	rs11165019	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.014132140725302	6.620292289906229	GTCGTAAAT
chr1	94026125	94026126	chr1:94026126:G:C	chr1:94026126:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	94385354	94385355	chr1:94385355:C:T	rs114758878	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr1	94427636	94427637	chr1:94427637:T:A	rs115618796	T	A	T	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	94528187	94528188	chr1:94528188:T:G	rs145116544	T	G	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr1	94646041	94646042	chr1:94646042:C:T	rs12132926	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr1	94706612	94706613	chr1:94706613:C:T	rs2802112	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr1	94912846	94912847	chr1:94912847:C:G	rs859047	C	G	G	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	1.4347812767068095	CTCATAAAA
chr1	94912868	94912869	chr1:94912869:C:G	rs864553	C	G	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	95196701	95196702	chr1:95196702:C:G	rs74391727	C	G	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr1	95452289	95452290	chr1:95452290:A:G	rs17327745	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	95889686	95889687	chr1:95889687:G:C	rs79387995	G	C	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	96012265	96012266	chr1:96012266:C:A	rs321238	C	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	7.807908079486923	CTCATAAAA
chr1	96013303	96013304	chr1:96013304:A:C	rs321236	A	C	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr1	96366953	96366954	chr1:96366954:A:G	rs74883562	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr1	97052311	97052312	chr1:97052312:C:T	rs169734	C	T	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr1	97383724	97383725	chr1:97383725:G:A	rs6690620	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr1	97383739	97383740	chr1:97383740:G:A	rs10875080	G	A	C	Hoxd9.mouse_homeodomain_3	2	1	-	8.232433356227913	6.838593505408839	GTCGTTAAA
chr1	97436014	97436015	chr1:97436015:G:T	rs12073650	G	T	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr1	97622168	97622169	chr1:97622169:A:G	rs2811193	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr1	97797096	97797097	chr1:97797097:A:T	rs1889229	A	T	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr1	98675436	98675437	chr1:98675437:T:A	rs9659362	T	A	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr1	98675447	98675448	chr1:98675448:G:A	rs9660123	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr1	98809105	98809106	chr1:98809106:C:G	rs12564405	C	G	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr1	99107735	99107736	chr1:99107736:A:G	rs3913779	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr1	99226122	99226123	chr1:99226123:T:C	rs17120039	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	99441911	99441912	chr1:99441912:T:C	rs76354105	T	C	T	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr1	99558042	99558043	chr1:99558043:T:C	rs79698573	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	99745887	99745888	chr1:99745888:C:G	rs7545648	C	G	a	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	100178943	100178944	chr1:100178944:C:T	rs11166411	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr1	100662692	100662693	chr1:100662693:C:T	rs4907921	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr1	101075810	101075811	chr1:101075811:A:G	rs10493943	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr1	101308297	101308298	chr1:101308298:A:G	rs143496239	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr1	101486434	101486435	chr1:101486435:T:C	rs12037883	T	C	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr1	101550891	101550892	chr1:101550892:A:C	rs1146718	A	C	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr1	102070941	102070942	chr1:102070942:T:C	rs6695233	T	C	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr1	103075774	103075775	chr1:103075775:G:A	rs11164661	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	103199519	103199520	chr1:103199520:T:C	rs4360545	T	C	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr1	104029357	104029358	chr1:104029358:A:G	rs3968403	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	104073252	104073253	chr1:104073253:A:G	rs3811505	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	105630467	105630468	chr1:105630468:G:T	rs11585693	G	T	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr1	108114561	108114562	chr1:108114562:C:T	rs3853497	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr1	109829281	109829282	chr1:109829282:G:A	rs12563382	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr1	110242726	110242727	chr1:110242727:C:A	rs814326	C	A	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr1	110384638	110384639	chr1:110384639:C:T	rs61787382	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr1	110556030	110556031	chr1:110556031:G:A	rs74117871	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr1	110799076	110799077	chr1:110799077:C:T	rs343818	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr1	110859678	110859679	chr1:110859679:G:A	rs67537159	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	111274804	111274805	chr1:111274805:T:C	rs113787546	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr1	111744325	111744326	chr1:111744326:G:C	rs881249	G	C	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr1	111837513	111837514	chr1:111837514:G:C	rs602825	G	C	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr1	112014274	112014275	chr1:112014275:T:C	rs6698778	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	112563746	112563747	chr1:112563747:A:G	rs12126277	A	G	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.911344677288588	9.305184528107661	GTTGTAAAA
chr1	113242710	113242711	chr1:113242711:T:A	rs61820068	T	A	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	5.867108747657061	GTCATAAAA
chr1	113303773	113303774	chr1:113303774:A:G	rs773591	A	G	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr1	113663533	113663534	chr1:113663534:G:C	rs373487616	G	C	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr1	114004181	114004182	chr1:114004182:G:A	rs2938323	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr1	115099594	115099595	chr1:115099595:G:T	rs192123729	G	T	A	Hoxd9.mouse_homeodomain_3	2	1	-	8.69304884965439	6.931395462814012	ATCGTAAAA
chr1	115168710	115168711	chr1:115168711:G:A	chr1:115168711:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr1	116067211	116067212	chr1:116067212:G:A	rs3748741	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr1	116708515	116708516	chr1:116708516:A:G	rs115299956	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr1	116846300	116846301	chr1:116846301:G:A	rs11800273	G	A	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr1	116987459	116987460	chr1:116987460:C:T	rs74873663	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr1	117117508	117117509	chr1:117117509:A:G	rs755592	A	G	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	117571632	117571633	chr1:117571633:T:C	rs75624648	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr1	117925015	117925016	chr1:117925016:G:A	rs2208375	G	A	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr1	118275856	118275857	chr1:118275857:G:A	rs17038102	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr1	118660993	118660994	chr1:118660994:T:A	rs10923642	T	A	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	119673663	119673664	chr1:119673664:C:T	rs12025390	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr1	119745834	119745835	chr1:119745835:G:A	rs1008898670	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	120266318	120266319	chr1:120266319:C:T	rs1487293484	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr1	120849190	120849191	chr1:120849191:G:A	rs568460	G	A	g	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr1	121448471	121448472	chr1:121448472:T:G	rs7410812	T	G	t	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr1	122491403	122491404	chr1:122491404:A:T	rs1293490588	A	T	.	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.703896382228609	CTCATAAAA
chr1	125093082	125093083	chr1:125093083:G:T	rs1432293902	G	T	.	Hoxd9.mouse_homeodomain_3	0	1	+	7.802115875352188	2.980824008986951	GTCGTAAAG
chr1	125093102	125093103	chr1:125093103:T:C	rs1311842887	T	C	.	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr1	125118537	125118538	chr1:125118538:G:A	rs1238056563	G	A	.	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	125118579	125118580	chr1:125118580:G:A	rs1393804680	G	A	.	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr1	147185903	147185904	chr1:147185904:T:C	rs17359879	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.802115875352188	1.1865729149083646	GTCGTAAAG
chr1	148158956	148158957	chr1:148158957:A:G	rs375622464	A	G	G	Hoxd9.mouse_homeodomain_3	5	1	+	7.911344677288588	1.2958017168447644	GTTGTAAAA
chr1	149930695	149930696	chr1:149930696:A:G	rs72692816	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr1	150363512	150363513	chr1:150363513:T:A	rs116800636	T	A	.	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr1	150363553	150363554	chr1:150363554:T:G	rs1010483186	T	G	.	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr1	151282047	151282048	chr1:151282048:C:G	rs587629813	C	G	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr1	151905746	151905747	chr1:151905747:G:T	rs9943281	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	7.807908079486923	CTCATAAAA
chr1	151980402	151980403	chr1:151980403:A:T	rs146666150	A	T	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	5.3584096670054535	GTTGTAAAA
chr1	151980408	151980409	chr1:151980409:C:T	rs2999528	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr1	152726278	152726279	chr1:152726279:T:G	rs6701376	T	G	G	Hoxd9.mouse_homeodomain_3	6	1	-	6.906634116835357	3.2017050517266146	GCCGTAAAC
chr1	153041471	153041472	chr1:153041472:T:C	rs2339501	T	C	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr1	153239075	153239076	chr1:153239076:G:A	rs12070995	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr1	153239080	153239081	chr1:153239081:T:C	rs6587733	T	C	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	153579014	153579015	chr1:153579015:C:T	rs116674798	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr1	153958647	153958648	chr1:153958648:G:A	rs34083775	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr1	153958673	153958674	chr1:153958674:G:C	chr1:153958674:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	1.1025460160274478	CTCGTAAAC
chr1	154444661	154444662	chr1:154444662:C:T	rs113127349	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr1	154521605	154521606	chr1:154521606:G:C	rs4269769	G	C	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr1	154521621	154521622	chr1:154521622:C:G	rs149337589	C	G	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr1	155219840	155219841	chr1:155219841:A:G	rs181763081	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr1	155979059	155979060	chr1:155979060:C:T	rs577847836	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr1	156080085	156080086	chr1:156080086:C:T	rs61813324	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr1	156311228	156311229	chr1:156311229:G:C	rs12132794	G	C	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr1	156338590	156338591	chr1:156338591:C:A	rs17551765	C	A	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr1	156338638	156338639	chr1:156338639:T:C	rs547738732	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr1	156525276	156525277	chr1:156525277:A:C	rs116813552	A	C	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr1	157234971	157234972	chr1:157234972:T:C	rs12037739	T	C	t	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	157629055	157629056	chr1:157629056:T:C	rs2758635	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.491880116855494	CTCATAAAA
chr1	158255113	158255114	chr1:158255114:C:T	rs2269714	C	T	.	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	158445456	158445457	chr1:158445457:T:C	chr1:158445457:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	6.916975105184722	GTCATAAAA
chr1	158924219	158924220	chr1:158924220:C:G	rs79690209	C	G	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr1	160172203	160172204	chr1:160172204:C:T	rs58153339	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr1	161531238	161531239	chr1:161531239:C:A	rs1316052969	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr1	161612843	161612844	chr1:161612844:G:A	rs141393258	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr1	161621267	161621268	chr1:161621268:C:T	rs61802340	C	T	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr1	161733644	161733645	chr1:161733645:G:A	rs61801184	G	A	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr1	162179227	162179228	chr1:162179228:C:G	rs115471639	C	G	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr1	162310223	162310224	chr1:162310224:T:G	rs2819317	T	G	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr1	162663527	162663528	chr1:162663528:T:C	rs73018584	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr1	163174917	163174918	chr1:163174918:C:A	rs560329014	C	A	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr1	163359107	163359108	chr1:163359108:A:G	rs16852991	A	G	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr1	163538553	163538554	chr1:163538554:C:T	rs2820871	C	T	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr1	163648392	163648393	chr1:163648393:T:G	rs1288911	T	G	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr1	164760601	164760602	chr1:164760602:T:C	rs35084195	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr1	165597915	165597916	chr1:165597916:A:G	rs17408590	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	165855895	165855896	chr1:165855896:A:G	rs10918295	A	G	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr1	166069729	166069730	chr1:166069730:A:G	rs4639733	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr1	166484925	166484926	chr1:166484926:A:G	rs4657562	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr1	167105751	167105752	chr1:167105752:C:T	rs145262781	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr1	167288210	167288211	chr1:167288211:C:T	rs141150410	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr1	168894561	168894562	chr1:168894562:T:C	rs4656623	T	C	C	Hoxd9.mouse_homeodomain_3	8	1	-	7.911344677288588	6.408276024533114	GTTGTAAAA
chr1	168958472	168958473	chr1:168958473:C:T	rs1288225874	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr1	169104002	169104003	chr1:169104003:C:T	rs10919059	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	169194004	169194005	chr1:169194005:G:A	rs4140540	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr1	170097754	170097755	chr1:170097755:T:C	rs12120025	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr1	170639344	170639345	chr1:170639345:C:G	rs535330	C	G	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr1	171334785	171334786	chr1:171334786:C:T	rs3820170	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr1	171646193	171646194	chr1:171646194:G:A	rs78578111	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr1	171843410	171843411	chr1:171843411:G:A	rs7546406	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.589037152396075	3.1928402743600652	CTCGTAAAT
chr1	172254597	172254598	chr1:172254598:G:A	rs11583757	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	172361022	172361023	chr1:172361023:T:G	chr1:172361023:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.911344677288588	6.69396864644176	GTTGTAAAA
chr1	172965198	172965199	chr1:172965199:A:G	rs116637993	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr1	174875249	174875250	chr1:174875250:G:A	rs78228670	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr1	175360575	175360576	chr1:175360576:A:T	rs6413828	A	T	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr1	176843279	176843280	chr1:176843280:G:A	rs12137658	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr1	177256852	177256853	chr1:177256853:G:T	chr1:177256853:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	4.946569054344	CTCGTAAAC
chr1	177386656	177386657	chr1:177386657:A:C	rs16851143	A	C	a	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr1	177933346	177933347	chr1:177933347:G:A	rs3813648	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr1	178451823	178451824	chr1:178451824:A:G	rs16852838	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr1	178809795	178809796	chr1:178809796:T:G	rs55958411	T	G	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr1	179831589	179831590	chr1:179831590:G:A	rs140815499	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr1	180155966	180155967	chr1:180155967:A:G	rs76221792	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	180155997	180155998	chr1:180155998:G:T	rs72710691	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr1	180229169	180229170	chr1:180229170:C:T	rs116315086	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr1	180451633	180451634	chr1:180451634:C:A	rs6674244	C	A	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr1	181043092	181043093	chr1:181043093:A:G	rs12134601	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr1	181390328	181390329	chr1:181390329:A:G	rs661206	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr1	181452244	181452245	chr1:181452245:A:G	rs668260	A	G	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr1	182004473	182004474	chr1:182004474:T:G	rs60670332	T	G	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr1	182249340	182249341	chr1:182249341:G:A	rs2489285	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr1	182259270	182259271	chr1:182259271:C:T	rs142532103	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	182392207	182392208	chr1:182392208:A:G	rs59310772	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.880089539778433	7.698915159352956	CTCGTAAAA
chr1	182392208	182392209	chr1:182392209:G:A	rs151203513	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	8.880089539778433	4.483892661742424	CTCGTAAAA
chr1	182563412	182563413	chr1:182563413:G:A	rs579067	G	A	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr1	182649124	182649125	chr1:182649125:A:G	rs615459	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	183126460	183126461	chr1:183126461:T:C	rs2296294	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr1	183169018	183169019	chr1:183169019:C:T	rs11801241	C	T	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr1	183174438	183174439	chr1:183174439:G:C	rs75177051	G	C	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr1	183822167	183822168	chr1:183822168:A:T	rs75364711	A	T	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr1	183861646	183861647	chr1:183861647:A:G	rs3010065	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	185014484	185014485	chr1:185014485:A:C	rs16823740	A	C	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr1	185512504	185512505	chr1:185512505:G:C	rs7516725	G	C	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	186905875	186905876	chr1:186905876:A:G	rs10798068	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr1	187070331	187070332	chr1:187070332:T:C	rs10911992	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	1.8045007974963716	GTCATAAAA
chr1	187123217	187123218	chr1:187123218:T:A	rs1924738	T	A	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr1	187573813	187573814	chr1:187573814:G:T	rs61812179	G	T	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr1	187688753	187688754	chr1:187688754:G:A	rs12042147	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr1	187839978	187839979	chr1:187839979:A:T	rs7534071	A	T	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr1	187883690	187883691	chr1:187883691:G:A	rs10798153	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr1	189158490	189158491	chr1:189158491:G:A	rs10733079	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.911344677288588	GTCGTAAAA
chr1	189614391	189614392	chr1:189614392:T:A	rs1928492	T	A	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr1	190273119	190273120	chr1:190273120:A:T	rs10800939	A	T	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr1	190443633	190443634	chr1:190443634:G:T	rs72731180	G	T	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr1	190807782	190807783	chr1:190807783:C:T	rs580764	C	T	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr1	192173454	192173455	chr1:192173455:C:T	rs61822862	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr1	192390833	192390834	chr1:192390834:G:A	rs10754004	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr1	192809956	192809957	chr1:192809957:A:G	rs76294834	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr1	192827320	192827321	chr1:192827321:A:T	rs710144	A	T	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	193657675	193657676	chr1:193657676:G:A	rs982101	G	A	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr1	193787289	193787290	chr1:193787290:A:G	rs41318650	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr1	193787309	193787310	chr1:193787310:G:A	rs6687160	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr1	194063140	194063141	chr1:194063141:G:A	rs1442423	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr1	195903164	195903165	chr1:195903165:A:G	rs10801490	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr1	196544563	196544564	chr1:196544564:G:A	rs10922082	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	6.703896382228609	CTCGTAAAT
chr1	196976919	196976920	chr1:196976920:T:G	rs146690273	T	G	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	197183858	197183859	chr1:197183859:A:G	rs7520503	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr1	198017994	198017995	chr1:198017995:G:A	rs2359376	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.69304884965439	7.299208998835316	ATCGTAAAA
chr1	198018578	198018579	chr1:198018579:A:G	rs9660817	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr1	198231843	198231844	chr1:198231844:T:G	rs6657318	T	G	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr1	198674205	198674206	chr1:198674206:A:G	rs10922472	A	G	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr1	200179476	200179477	chr1:200179477:G:C	rs12071876	G	C	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr1	200336552	200336553	chr1:200336553:C:T	rs76569075	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	200638337	200638338	chr1:200638338:A:G	rs10919992	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr1	201774809	201774810	chr1:201774810:G:A	rs516705	G	A	g	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr1	202035227	202035228	chr1:202035228:A:G	rs116756971	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	202193141	202193142	chr1:202193142:G:T	rs528917773	G	T	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr1	202749610	202749611	chr1:202749611:C:T	rs12754666	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	203279908	203279909	chr1:203279909:G:A	rs2494274	G	A	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr1	203444316	203444317	chr1:203444317:C:G	rs79158296	C	G	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr1	203505280	203505281	chr1:203505281:C:G	rs17576674	C	G	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr1	203589579	203589580	chr1:203589580:T:C	rs2798626	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	203589602	203589603	chr1:203589603:G:A	rs114730027	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr1	203938006	203938007	chr1:203938007:T:C	rs7545327	T	C	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr1	204035889	204035890	chr1:204035890:C:T	rs4301679	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr1	204087819	204087820	chr1:204087820:G:A	rs34618698	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	204743373	204743374	chr1:204743374:G:A	rs4951108	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr1	204814478	204814479	chr1:204814479:A:G	rs16854419	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr1	205555205	205555206	chr1:205555206:A:G	rs12755324	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr1	205770063	205770064	chr1:205770064:T:C	rs823138	T	C	C	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr1	205915009	205915010	chr1:205915010:C:T	rs140760240	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr1	207006786	207006787	chr1:207006787:G:A	rs2629645	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	6.703896382228609	CTCGTAAAT
chr1	207051920	207051921	chr1:207051921:T:C	rs4844372	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr1	207364736	207364737	chr1:207364737:T:C	rs148281575	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr1	208156877	208156878	chr1:208156878:C:T	rs11118995	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr1	208502959	208502960	chr1:208502960:G:A	rs12753174	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr1	208942631	208942632	chr1:208942632:C:T	rs12037720	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr1	209876632	209876633	chr1:209876633:T:C	rs116333642	T	C	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	209876634	209876635	chr1:209876635:C:A	rs80312623	C	A	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr1	209876635	209876636	chr1:209876636:G:C	rs563368118	G	C	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	210446672	210446673	chr1:210446673:C:T	rs4845030	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr1	210905687	210905688	chr1:210905688:C:T	rs17188679	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr1	211515678	211515679	chr1:211515679:A:G	rs546749719	A	G	A	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr1	213741570	213741571	chr1:213741571:G:A	rs11803653	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr1	213992693	213992694	chr1:213992694:C:T	rs113315862	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr1	216662342	216662343	chr1:216662343:A:G	rs899031351	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr1	217096595	217096596	chr1:217096596:G:C	rs1166347	G	C	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr1	217124779	217124780	chr1:217124780:A:C	rs10495041	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	4.829041988575794	CTCATAAAA
chr1	218025712	218025713	chr1:218025713:A:G	rs76066338	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.491880116855494	CTCATAAAA
chr1	219120870	219120871	chr1:219120871:C:T	rs552088823	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr1	219315416	219315417	chr1:219315417:A:T	rs11118271	A	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	6.163945085190828	CTCATAAAA
chr1	219506554	219506555	chr1:219506555:G:A	rs78724722	G	A	g	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr1	219784673	219784674	chr1:219784674:A:T	rs192692353	A	T	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr1	220799828	220799829	chr1:220799829:C:T	rs72472308	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr1	221744426	221744427	chr1:221744427:C:G	rs11118845	C	G	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	221806419	221806420	chr1:221806420:T:C	rs3934724	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr1	222265797	222265798	chr1:222265798:A:G	rs148367083	A	G	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr1	223079801	223079802	chr1:223079802:T:G	rs4134452	T	G	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr1	223177025	223177026	chr1:223177026:A:T	rs35169648	A	T	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	223749482	223749483	chr1:223749483:G:A	rs28370068	G	A	.	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr1	223992874	223992875	chr1:223992875:C:T	rs6682180	C	T	-	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr1	224930512	224930513	chr1:224930513:A:G	rs558188973	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr1	225592898	225592899	chr1:225592899:A:C	chr1:225592899:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr1	225778279	225778280	chr1:225778280:A:G	rs75348489	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr1	225778309	225778310	chr1:225778310:G:T	chr1:225778310:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr1	226122963	226122964	chr1:226122964:T:G	rs868071445	T	G	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr1	226425787	226425788	chr1:226425788:A:T	rs6426465	A	T	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr1	226425790	226425791	chr1:226425791:T:C	rs113566466	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr1	226947086	226947087	chr1:226947087:A:G	rs190444977	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr1	226989742	226989743	chr1:226989743:A:G	rs3768424	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr1	226989754	226989755	chr1:226989755:G:C	rs1168617328	G	C	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr1	227766253	227766254	chr1:227766254:C:T	rs730684	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr1	227817264	227817265	chr1:227817265:C:A	rs61826983	C	A	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr1	227885782	227885783	chr1:227885783:A:G	rs138113414	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr1	227891490	227891491	chr1:227891491:C:T	rs10799454	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr1	228179498	228179499	chr1:228179499:C:T	rs28587961	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr1	228407705	228407706	chr1:228407706:A:G	rs79654767	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr1	228442859	228442860	chr1:228442860:C:T	rs7555298	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr1	228442887	228442888	chr1:228442888:C:G	rs7555386	C	G	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr1	228781303	228781304	chr1:228781304:A:G	rs241323	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	+	7.8073383678986845	6.304269715143211	CTCGTTAAA
chr1	228930930	228930931	chr1:228930931:G:A	rs114577442	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr1	228949689	228949690	chr1:228949690:A:C	rs11580652	A	C	.	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr1	230241738	230241739	chr1:230241739:G:A	rs118162296	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr1	230281917	230281918	chr1:230281918:C:G	rs7022	C	G	.	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr1	230682878	230682879	chr1:230682879:G:A	rs3789653	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr1	230689700	230689701	chr1:230689701:T:C	rs10864768	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr1	230693126	230693127	chr1:230693127:A:G	rs3789662	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr1	230979907	230979908	chr1:230979908:C:T	rs12030129	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr1	231028756	231028757	chr1:231028757:C:T	rs111688264	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr1	231338547	231338548	chr1:231338548:A:G	rs117192083	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr1	231460710	231460711	chr1:231460711:C:T	rs116405498	C	T	c	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr1	231777906	231777907	chr1:231777907:A:G	rs2812392	A	G	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr1	231872764	231872765	chr1:231872765:G:A	rs115805116	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr1	231991381	231991382	chr1:231991382:A:G	rs2806468	A	G	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr1	232019089	232019090	chr1:232019090:C:T	rs928099	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr1	232487576	232487577	chr1:232487577:T:A	rs4233064	T	A	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr1	232635844	232635845	chr1:232635845:C:T	rs67364562	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr1	232635846	232635847	chr1:232635847:G:A	rs184811218	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr1	232870916	232870917	chr1:232870917:A:G	rs2753394	A	G	a	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr1	232877309	232877310	chr1:232877310:G:A	rs6668587	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	7.026203907121121	GTCATAAAA
chr1	233254384	233254385	chr1:233254385:T:C	rs76305936	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr1	233601507	233601508	chr1:233601508:C:A	rs1773953	C	A	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr1	233630102	233630103	chr1:233630103:T:C	rs701221	T	C	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr1	233668190	233668191	chr1:233668191:T:G	rs6699231	T	G	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr1	234589388	234589389	chr1:234589389:C:T	rs11581076	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr1	234618329	234618330	chr1:234618330:A:C	rs115478850	A	C	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr1	234746066	234746067	chr1:234746067:G:T	rs2796167	G	T	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr1	234771994	234771995	chr1:234771995:G:C	rs755577554	G	C	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr1	235280020	235280021	chr1:235280021:C:T	rs7540410	C	T	c	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr1	236004114	236004115	chr1:236004115:C:T	rs75314673	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr1	236132778	236132779	chr1:236132779:A:G	rs6689258	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr1	236507747	236507748	chr1:236507748:A:T	rs144105338	A	T	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	5.442013759327832	CTCATAAAA
chr1	236733947	236733948	chr1:236733948:C:A	rs12048865	C	A	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr1	236733951	236733952	chr1:236733952:G:T	rs34574589	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	3.0900528109233516	GTTGTAAAA
chr1	237477059	237477060	chr1:237477060:A:G	rs10802614	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr1	238089076	238089077	chr1:238089077:C:T	rs12076048	C	T	c	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr1	238341247	238341248	chr1:238341248:T:C	rs1361655	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr1	238897659	238897660	chr1:238897660:G:A	rs7551773	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr1	238966290	238966291	chr1:238966291:T:C	rs9428793	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr1	239318126	239318127	chr1:239318127:G:A	rs6702543	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr1	240031657	240031658	chr1:240031658:T:A	rs12742786	T	A	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr1	240199908	240199909	chr1:240199909:A:C	rs1456660	A	C	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	240336938	240336939	chr1:240336939:T:A	rs72766283	T	A	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr1	240735636	240735637	chr1:240735637:C:G	rs116258053	C	G	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr1	241004840	241004841	chr1:241004841:G:A	rs139636757	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr1	241609724	241609725	chr1:241609725:C:T	rs3765814	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	7.026203907121121	GTCATAAAA
chr1	241838397	241838398	chr1:241838398:G:A	rs34619198	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr1	241846813	241846814	chr1:241846814:A:G	rs3754093	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	242033664	242033665	chr1:242033665:G:A	rs28649433	G	A	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr1	242196375	242196376	chr1:242196376:T:C	rs10803021	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr1	242547513	242547514	chr1:242547514:T:C	rs7551410	T	C	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr1	242567161	242567162	chr1:242567162:G:A	rs6690768	G	A	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr1	243498439	243498440	chr1:243498440:T:C	rs74777638	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr1	243916839	243916840	chr1:243916840:C:T	rs73121424	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	6.906634116835357	6.021493346667889	GCCGTAAAC
chr1	244087014	244087015	chr1:244087015:C:T	rs2454238	C	T	c	Hoxd9.mouse_homeodomain_3	0	1	-	8.014132140725302	7.401996462272032	GTCGTAAAT
chr1	244653936	244653937	chr1:244653937:G:T	rs41269389	G	T	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr1	245179715	245179716	chr1:245179716:C:G	rs7543651	C	G	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr1	245411547	245411548	chr1:245411548:C:G	rs1069231	C	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	245513726	245513727	chr1:245513727:C:T	rs10802215	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr1	245956494	245956495	chr1:245956495:G:A	rs148346568	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr1	246150975	246150976	chr1:246150976:A:G	rs7538139	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr1	247211196	247211197	chr1:247211197:T:C	rs557961901	T	C	t	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr1	247298970	247298971	chr1:247298971:A:G	rs9725334	A	G	a	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr1	247327004	247327005	chr1:247327005:G:A	rs6657577	G	A	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr1	247473603	247473604	chr1:247473604:C:T	rs4925674	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr1	247615213	247615214	chr1:247615214:C:T	rs115254360	C	T	-	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr1	248385524	248385525	chr1:248385525:C:T	rs28738670	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr1	248482466	248482467	chr1:248482467:C:G	rs73149426	C	G	.	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr10	486198	486199	chr10:486199:T:C	rs11252693	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr10	511372	511373	chr10:511373:C:T	rs17159618	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.232433356227913	6.838593505408839	GTCGTTAAA
chr10	729324	729325	chr10:729325:A:G	rs17293489	A	G	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr10	1097886	1097887	chr10:1097887:C:T	rs12784270	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	6.906634116835357	6.021493346667889	GCCGTAAAC
chr10	1491923	1491924	chr10:1491924:A:C	rs4880512	A	C	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr10	1586847	1586848	chr10:1586848:G:A	rs3916137	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr10	1648680	1648681	chr10:1648681:C:A	rs10903533	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	5.407865693094578	GCCGTAAAA
chr10	1648680	1648681	chr10:1648681:C:T	chr10:1648681:C:T	C	T	A	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr10	1736520	1736521	chr10:1736521:C:G	rs76740903	C	G	C	Hoxd9.mouse_homeodomain_3	8	1	-	7.802115875352188	8.087808497260832	GTCGTAAAG
chr10	1863180	1863181	chr10:1863181:A:T	rs10903577	A	T	T	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.703896382228609	CTCATAAAA
chr10	1891685	1891686	chr10:1891686:G:A	rs7919309	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	1891689	1891690	chr10:1891690:C:T	rs7920202	C	T	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr10	2059668	2059669	chr10:2059669:C:T	rs4880550	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr10	2059687	2059688	chr10:2059688:T:A	rs10903662	T	A	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr10	2141112	2141113	chr10:2141113:T:C	rs10903683	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr10	2252155	2252156	chr10:2252156:A:G	rs74809959	A	G	a	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr10	2367190	2367191	chr10:2367191:A:G	rs17158213	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr10	2471553	2471554	chr10:2471554:C:T	rs17176386	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr10	2897683	2897684	chr10:2897684:A:C	rs7090292	A	C	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr10	3096457	3096458	chr10:3096458:C:T	rs146371966	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr10	3148604	3148605	chr10:3148605:T:C	rs2291103	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr10	3227124	3227125	chr10:3227125:C:T	rs2281854	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	8.420043757940196	GTCGTAAAA
chr10	3442688	3442689	chr10:3442689:C:T	rs7920115	C	T	c	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	3472452	3472453	chr10:3472453:T:G	rs77377630	T	G	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	5.724807546727723	CTCATAAAA
chr10	4093901	4093902	chr10:4093902:T:A	rs10795123	T	A	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr10	4191844	4191845	chr10:4191845:T:A	rs911739	T	A	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr10	4191847	4191848	chr10:4191848:A:C	rs911740	A	C	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr10	4532744	4532745	chr10:4532745:G:A	chr10:4532745:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr10	4652666	4652667	chr10:4652667:G:A	rs11252643	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr10	5023554	5023555	chr10:5023555:C:T	rs2895059	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr10	5023563	5023564	chr10:5023564:C:T	rs2398193	C	T	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr10	5076725	5076726	chr10:5076726:A:G	rs10752002	A	G	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr10	5474565	5474566	chr10:5474566:G:A	rs4272701	G	A	g	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr10	5673745	5673746	chr10:5673746:T:G	rs4592326	T	G	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr10	6028711	6028712	chr10:6028712:G:A	rs2025346	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr10	7936067	7936068	chr10:7936068:A:G	rs2182861	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr10	8041911	8041912	chr10:8041912:T:A	rs61833482	T	A	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr10	8041924	8041925	chr10:8041925:T:C	rs578268	T	C	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr10	8088823	8088824	chr10:8088824:G:A	rs34570102	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr10	8088826	8088827	chr10:8088827:C:A	rs10752127	C	A	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr10	8523137	8523138	chr10:8523138:C:A	rs2646392	C	A	A	Hoxd9.mouse_homeodomain_3	2	1	+	8.232433356227913	6.470779969387537	GTCGTTAAA
chr10	9621442	9621443	chr10:9621443:A:G	rs4747833	A	G	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr10	9621460	9621461	chr10:9621461:C:T	rs12251781	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr10	10209565	10209566	chr10:10209566:C:T	rs1885738	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr10	10657987	10657988	chr10:10657988:C:T	rs10905779	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr10	11155881	11155882	chr10:11155882:A:G	rs679944	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr10	11209026	11209027	chr10:11209027:A:G	rs56170700	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr10	11300923	11300924	chr10:11300924:C:A	rs10905928	C	A	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr10	11353211	11353212	chr10:11353212:G:A	rs7899892	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr10	11353224	11353225	chr10:11353225:A:G	rs7917066	A	G	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr10	11430821	11430822	chr10:11430822:G:T	rs73567333	G	T	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr10	11739121	11739122	chr10:11739122:C:T	rs11257292	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr10	11850162	11850163	chr10:11850163:T:C	rs10906026	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr10	12455581	12455582	chr10:12455582:T:C	rs2104588	T	C	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr10	12651060	12651061	chr10:12651061:C:T	rs117268142	C	T	G	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr10	12785690	12785691	chr10:12785691:C:T	rs3802558	C	T	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr10	12808146	12808147	chr10:12808147:T:C	rs1999370	T	C	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr10	12808150	12808151	chr10:12808151:C:A	rs59839798	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr10	12818038	12818039	chr10:12818039:A:G	rs1644419	A	G	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr10	12818040	12818041	chr10:12818041:G:C	rs1644420	G	C	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr10	13643550	13643551	chr10:13643551:A:G	rs4626964	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr10	14093803	14093804	chr10:14093804:A:T	rs11258861	A	T	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr10	14093809	14093810	chr10:14093810:C:T	rs75853274	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr10	14481944	14481945	chr10:14481945:G:T	chr10:14481945:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr10	14481965	14481966	chr10:14481966:G:A	rs79429150	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	6.77757273876414	CTCGTAAAC
chr10	14624717	14624718	chr10:14624718:A:G	rs11592456	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr10	14624737	14624738	chr10:14624738:A:G	rs7902538	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	8.420043757940196	1.5516011963436003	GTCATAAAA
chr10	15347209	15347210	chr10:15347210:C:T	rs12783193	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr10	15725482	15725483	chr10:15725483:G:A	rs12570305	G	A	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr10	15814836	15814837	chr10:15814837:T:C	rs72781875	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr10	16950132	16950133	chr10:16950133:T:G	rs74668791	T	G	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr10	17077304	17077305	chr10:17077305:A:T	rs78749947	A	T	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	6.922197597731219	CTCATAAAA
chr10	17148181	17148182	chr10:17148182:G:T	rs10904889	G	T	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr10	17176428	17176429	chr10:17176429:T:C	rs7092777	T	C	C	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr10	17233450	17233451	chr10:17233451:C:T	rs45437393	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr10	17587033	17587034	chr10:17587034:A:G	rs12771514	A	G	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr10	17840131	17840132	chr10:17840132:G:A	rs12775023	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr10	18104050	18104051	chr10:18104051:G:A	rs10828242	G	A	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr10	18224768	18224769	chr10:18224769:G:A	rs1779213	G	A	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr10	18446046	18446047	chr10:18446047:G:C	rs10828704	G	C	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr10	18877149	18877150	chr10:18877150:A:G	rs7900792	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr10	19017248	19017249	chr10:19017249:A:T	rs10826808	A	T	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	1.1265062080143724	CTCATAAAA
chr10	19294364	19294365	chr10:19294365:C:A	rs80355567	C	A	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr10	19296841	19296842	chr10:19296842:G:C	rs2484098	G	C	t	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr10	19947341	19947342	chr10:19947342:G:A	rs7898627	G	A	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr10	20227657	20227658	chr10:20227658:C:T	rs7083165	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.176266619256224	6.291125849088757	GGCGTAAAA
chr10	21270323	21270324	chr10:21270324:C:T	rs7903792	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	7.026203907121121	GTCATAAAA
chr10	21511074	21511075	chr10:21511075:G:A	rs778800174	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr10	22229476	22229477	chr10:22229477:A:C	rs1017268011	A	C	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr10	22229500	22229501	chr10:22229501:G:A	rs11816971	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr10	22229507	22229508	chr10:22229508:G:A	rs374126691	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr10	22229514	22229515	chr10:22229515:T:C	rs998480638	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr10	22428388	22428389	chr10:22428389:G:A	rs767165118	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr10	22558963	22558964	chr10:22558964:A:G	rs7081744	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr10	22684187	22684188	chr10:22684188:G:C	rs12246676	G	C	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr10	23494058	23494059	chr10:23494059:G:A	rs80077568	G	A	g	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr10	24470159	24470160	chr10:24470160:C:T	rs16924805	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr10	24891074	24891075	chr10:24891075:T:C	rs1543576	T	C	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr10	25382452	25382453	chr10:25382453:A:C	rs1754253	A	C	A	Hoxd9.mouse_homeodomain_3	6	1	+	8.420043757940196	4.715114692831453	GTCATAAAA
chr10	25508481	25508482	chr10:25508482:G:A	rs145677326	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr10	26278758	26278759	chr10:26278759:T:C	rs3781113	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr10	26359763	26359764	chr10:26359764:C:G	rs2184569	C	G	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr10	28335370	28335371	chr10:28335371:T:A	rs4749318	T	A	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr10	28551458	28551459	chr10:28551459:G:T	rs61848479	G	T	g	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr10	28705446	28705447	chr10:28705447:T:C	rs11592762	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.911344677288588	1.0429021156919922	GTTGTAAAA
chr10	28823085	28823086	chr10:28823086:A:G	rs10826531	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr10	29038245	29038246	chr10:29038246:A:G	rs17693772	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr10	29240986	29240987	chr10:29240987:C:T	rs36069765	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr10	29619198	29619199	chr10:29619199:T:C	rs1247419	T	C	C	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.016968795292732	CTCATAAAA
chr10	29730823	29730824	chr10:29730824:C:G	rs12359760	C	G	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr10	30804655	30804656	chr10:30804656:G:A	rs947098	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr10	30980832	30980833	chr10:30980833:T:G	rs79459491	T	G	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr10	31279054	31279055	chr10:31279055:C:T	rs143226907	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr10	31319091	31319092	chr10:31319092:T:C	rs1373692580	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr10	31319137	31319138	chr10:31319138:G:A	rs773657887	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr10	31896665	31896666	chr10:31896666:T:C	rs74506360	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr10	32133106	32133107	chr10:32133107:G:A	rs2998034	G	A	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr10	32318731	32318732	chr10:32318732:G:C	rs184330723	G	C	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr10	33074254	33074255	chr10:33074255:A:G	rs79340936	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr10	33114542	33114543	chr10:33114543:T:C	rs150006323	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr10	33114575	33114576	chr10:33114576:C:A	rs60171105	C	A	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr10	33161013	33161014	chr10:33161014:C:T	rs7923390	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr10	33196549	33196550	chr10:33196550:G:T	rs2247015	G	T	t	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr10	34125936	34125937	chr10:34125937:G:A	rs3004929	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr10	34299538	34299539	chr10:34299539:A:G	rs16935300	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr10	34311057	34311058	chr10:34311058:T:C	rs1936429	T	C	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr10	34757860	34757861	chr10:34757861:C:G	rs10763999	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr10	35197491	35197492	chr10:35197492:G:A	rs12762891	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr10	35872510	35872511	chr10:35872511:G:A	rs2247156	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr10	36257161	36257162	chr10:36257162:G:A	rs74136036	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr10	36257166	36257167	chr10:36257167:T:G	chr10:36257167:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr10	36507103	36507104	chr10:36507104:G:T	rs7897758	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr10	37269889	37269890	chr10:37269890:G:A	rs1200816	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	-	8.880089539778433	4.483892661742424	CTCGTAAAA
chr10	37858280	37858281	chr10:37858281:T:C	rs150451135	T	C	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr10	38063923	38063924	chr10:38063924:C:T	rs11011437	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr10	38093885	38093886	chr10:38093886:T:G	chr10:38093886:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr10	38402729	38402730	chr10:38402730:C:T	rs998886196	C	T	.	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr10	38402734	38402735	chr10:38402735:A:G	rs181269463	A	G	.	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr10	38402767	38402768	chr10:38402768:C:T	rs112710580	C	T	.	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr10	42149990	42149991	chr10:42149991:G:C	rs61847200	G	C	.	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr10	42150013	42150014	chr10:42150014:A:G	rs72785922	A	G	.	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr10	42366630	42366631	chr10:42366631:T:C	rs2489684	T	C	-	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr10	42553392	42553393	chr10:42553393:C:A	rs2982229	C	A	.	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr10	43247729	43247730	chr10:43247730:A:G	rs2460550	A	G	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr10	43290498	43290499	chr10:43290499:G:C	rs2251416	G	C	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr10	44205208	44205209	chr10:44205209:T:G	rs12572910	T	G	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr10	44280783	44280784	chr10:44280784:G:T	rs74138269	G	T	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr10	44326323	44326324	chr10:44326324:C:T	rs1111259	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr10	44393245	44393246	chr10:44393246:C:T	rs144586594	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr10	44870259	44870260	chr10:44870260:T:C	rs79211566	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.911344677288588	1.0429021156919922	GTTGTAAAA
chr10	45001453	45001454	chr10:45001454:C:T	rs74995926	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr10	45420777	45420778	chr10:45420778:T:A	rs17157771	T	A	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr10	45420787	45420788	chr10:45420788:G:A	rs111339241	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr10	45592443	45592444	chr10:45592444:G:A	rs11239571	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	45972328	45972329	chr10:45972329:C:T	rs1311254019	C	T	C	Hoxd9.mouse_homeodomain_3	8	1	+	6.906634116835357	6.832957760299826	GCCGTAAAC
chr10	45972329	45972330	chr10:45972330:A:T	chr10:45972330:A:T	A	T	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr10	48441747	48441748	chr10:48441748:G:A	rs10735225	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr10	48558154	48558155	chr10:48558155:G:C	rs2166227	G	C	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr10	48762180	48762181	chr10:48762181:G:A	rs2620902	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr10	48798719	48798720	chr10:48798720:G:T	rs61838863	G	T	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	49656856	49656857	chr10:49656857:G:A	rs4838393	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr10	49747602	49747603	chr10:49747603:A:G	rs1258173	A	G	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr10	50680109	50680110	chr10:50680110:A:G	rs3011746	A	G	.	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr10	51002488	51002489	chr10:51002489:A:G	rs10995318	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr10	51682987	51682988	chr10:51682988:T:C	rs12246673	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr10	52316888	52316889	chr10:52316889:A:G	rs74711339	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr10	52704139	52704140	chr10:52704140:C:A	rs7088220	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr10	52818306	52818307	chr10:52818307:C:T	rs75871456	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr10	52879804	52879805	chr10:52879805:T:C	rs2067827	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr10	53899889	53899890	chr10:53899890:C:G	rs77371413	C	G	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr10	54124647	54124648	chr10:54124648:C:T	rs11004085	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr10	55602183	55602184	chr10:55602184:G:T	rs4304667	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	4.4601221646686176	GGCGTAAAA
chr10	57709080	57709081	chr10:57709081:G:A	rs6481312	G	A	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr10	58930966	58930967	chr10:58930967:C:T	rs3906880	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr10	59125539	59125540	chr10:59125540:C:T	rs919827	C	T	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr10	59178012	59178013	chr10:59178013:A:G	rs117169145	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr10	59321952	59321953	chr10:59321953:A:C	rs284642	A	C	C	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	5.7824267684371495	GTTGTAAAA
chr10	59586618	59586619	chr10:59586619:A:G	rs7907910	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr10	59624004	59624005	chr10:59624005:G:A	rs4948343	G	A	g	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr10	60009578	60009579	chr10:60009579:C:T	rs10821653	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr10	60630835	60630836	chr10:60630836:A:G	rs10821807	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr10	60770001	60770002	chr10:60770002:C:G	rs72811859	C	G	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr10	60816487	60816488	chr10:60816488:C:T	rs562458152	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr10	61463766	61463767	chr10:61463767:T:C	rs758013414	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	8.420043757940196	4.44206378362196	GTCATAAAA
chr10	61965191	61965192	chr10:61965192:T:G	rs77212316	T	G	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr10	61965664	61965665	chr10:61965665:G:C	rs4948494	G	C	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr10	62056106	62056107	chr10:62056107:T:C	rs7898881	T	C	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr10	62059490	62059491	chr10:62059491:G:A	rs115052976	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr10	62281493	62281494	chr10:62281494:C:T	rs113557487	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr10	62853063	62853064	chr10:62853064:G:A	rs7916322	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr10	64038090	64038091	chr10:64038091:C:T	rs71508986	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr10	64874914	64874915	chr10:64874915:G:A	rs2962750	G	A	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr10	65611496	65611497	chr10:65611497:A:G	rs1902362	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	6.916975105184722	GTCATAAAA
chr10	67221604	67221605	chr10:67221605:C:T	rs10997578	C	T	c	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr10	67803192	67803193	chr10:67803193:T:C	rs9804180	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr10	68334429	68334430	chr10:68334430:C:A	rs116595367	C	A	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr10	68364491	68364492	chr10:68364492:A:T	rs12217933	A	T	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	68527592	68527593	chr10:68527593:G:T	rs773763655	G	T	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr10	68527594	68527595	chr10:68527595:G:C	rs3740592	G	C	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr10	68527616	68527617	chr10:68527617:C:T	rs1242010654	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr10	68527617	68527618	chr10:68527618:C:T	chr10:68527618:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr10	68817284	68817285	chr10:68817285:T:C	rs2454317	T	C	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr10	68957208	68957209	chr10:68957209:C:A	rs77902788	C	A	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr10	68959492	68959493	chr10:68959493:A:G	rs75988071	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	69463172	69463173	chr10:69463173:C:G	rs2394569	C	G	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr10	70105331	70105332	chr10:70105332:G:A	rs16927298	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr10	70108859	70108860	chr10:70108860:A:G	rs2271699	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr10	70287456	70287457	chr10:70287457:C:T	rs12354675	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr10	70328477	70328478	chr10:70328478:C:T	rs9730911	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr10	70829975	70829976	chr10:70829976:G:A	rs80152332	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr10	70887027	70887028	chr10:70887028:T:A	rs12769766	T	A	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.703896382228609	CTCATAAAA
chr10	70985229	70985230	chr10:70985230:G:A	rs1683863	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr10	71108499	71108500	chr10:71108500:C:A	rs2211317	C	A	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr10	71236476	71236477	chr10:71236477:C:T	rs12766963	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr10	71677802	71677803	chr10:71677803:T:C	rs1227040	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr10	71706549	71706550	chr10:71706550:C:T	rs151013881	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr10	71748977	71748978	chr10:71748978:G:C	rs77870539	G	C	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr10	71777295	71777296	chr10:71777296:C:T	rs7900759	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr10	72065633	72065634	chr10:72065634:C:T	rs7898496	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr10	72326893	72326894	chr10:72326894:C:T	rs9415063	C	T	-	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr10	73413360	73413361	chr10:73413361:G:C	rs147663589	G	C	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr10	74322184	74322185	chr10:74322185:G:T	rs10824149	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr10	74950317	74950318	chr10:74950318:G:A	rs11001217	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr10	75394477	75394478	chr10:75394478:A:G	rs12257078	A	G	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr10	75394514	75394515	chr10:75394515:G:T	rs548708058	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr10	76309812	76309813	chr10:76309813:C:G	rs562132829	C	G	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.48624968895936	GTTGTAAAA
chr10	76779193	76779194	chr10:76779194:A:G	rs2588333	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr10	76880149	76880150	chr10:76880150:A:C	rs1897593	A	C	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr10	78166731	78166732	chr10:78166732:A:T	rs1149757	A	T	T	Hoxd9.mouse_homeodomain_3	4	1	-	8.880089539778433	5.717515674867453	CTCGTAAAA
chr10	78172801	78172802	chr10:78172802:T:C	rs11597258	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr10	79114817	79114818	chr10:79114818:C:T	rs974749597	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr10	79387874	79387875	chr10:79387875:G:A	rs113523894	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr10	79479604	79479605	chr10:79479605:C:A	rs10762867	C	A	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr10	80896526	80896527	chr10:80896527:C:T	rs1002745	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr10	80908502	80908503	chr10:80908503:C:T	rs57363554	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr10	81110706	81110707	chr10:81110707:A:T	rs73307769	A	T	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr10	83164407	83164408	chr10:83164408:T:C	rs10749204	T	C	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr10	83164422	83164423	chr10:83164423:G:A	rs11197589	G	A	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr10	83164440	83164441	chr10:83164441:G:A	rs11197590	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr10	83164443	83164444	chr10:83164444:T:C	rs11197591	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr10	83204310	83204311	chr10:83204311:C:T	rs11197760	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr10	83352712	83352713	chr10:83352713:G:A	rs7076751	G	A	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr10	83536752	83536753	chr10:83536753:A:G	rs7923108	A	G	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr10	83536779	83536780	chr10:83536780:A:C	rs148858151	A	C	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr10	84521820	84521821	chr10:84521821:T:C	rs2798070	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr10	86187523	86187524	chr10:86187524:C:T	rs117662428	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr10	86674266	86674267	chr10:86674267:C:T	rs138578947	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr10	87325068	87325069	chr10:87325069:C:G	rs184954980	C	G	c	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr10	87879229	87879230	chr10:87879230:C:T	rs75260973	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.8073383678986845	3.411141489862676	CTCGTTAAA
chr10	88141513	88141514	chr10:88141514:C:T	rs10887789	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr10	88316639	88316640	chr10:88316640:C:G	rs6586125	C	G	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.37702088702296	7.802115875352188	CTCGTAAAG
chr10	88919161	88919162	chr10:88919162:A:G	rs17114152	A	G	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr10	89262585	89262586	chr10:89262586:T:C	rs1036537380	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.911344677288588	1.0429021156919922	GTTGTAAAA
chr10	89276044	89276045	chr10:89276045:C:T	rs1122783	C	T	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr10	89278694	89278695	chr10:89278695:T:C	rs9664487	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr10	89415512	89415513	chr10:89415513:G:T	rs78168892	G	T	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr10	89415540	89415541	chr10:89415541:T:C	rs304451	T	C	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr10	89537959	89537960	chr10:89537960:C:T	rs12254170	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr10	89700013	89700014	chr10:89700014:A:C	rs73382916	A	C	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr10	90831478	90831479	chr10:90831479:A:T	rs7897751	A	T	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	6.163945085190828	CTCATAAAA
chr10	91540799	91540800	chr10:91540800:G:T	rs55785441	G	T	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr10	93084108	93084109	chr10:93084109:C:G	rs10748591	C	G	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr10	93274684	93274685	chr10:93274685:A:T	rs7082774	A	T	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr10	93401971	93401972	chr10:93401972:T:G	rs77106444	T	G	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr10	93515132	93515133	chr10:93515133:C:G	rs10882258	C	G	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr10	93993018	93993019	chr10:93993019:T:G	rs11599672	T	G	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr10	93993257	93993258	chr10:93993258:C:A	rs75298948	C	A	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr10	94076188	94076189	chr10:94076189:A:G	rs927720	A	G	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr10	94631596	94631597	chr10:94631597:G:T	rs75441210	G	T	-	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr10	95469381	95469382	chr10:95469382:C:G	rs541203	C	G	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr10	95908551	95908552	chr10:95908552:T:A	rs10786241	T	A	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr10	96831933	96831934	chr10:96831934:T:C	rs368897487	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.176266619256224	4.013692754345243	GGCGTAAAA
chr10	97161082	97161083	chr10:97161083:G:A	rs17502307	G	A	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr10	100014565	100014566	chr10:100014566:A:G	rs11190365	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr10	100826021	100826022	chr10:100826022:G:A	rs4144093	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr10	100844166	100844167	chr10:100844167:C:T	rs4919502	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr10	102226129	102226130	chr10:102226130:G:T	rs61874851	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	5.93726177251258	CCCGTAAAA
chr10	103284399	103284400	chr10:103284400:C:T	rs4918003	C	T	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr10	103966633	103966634	chr10:103966634:A:G	rs779337817	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr10	104269420	104269421	chr10:104269421:G:T	rs45484701	G	T	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr10	104642624	104642625	chr10:104642625:G:A	rs61732122	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr10	105077759	105077760	chr10:105077760:T:A	rs790737	T	A	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr10	105243772	105243773	chr10:105243773:G:A	rs12569994	G	A	a	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr10	105567280	105567281	chr10:105567281:C:T	rs10786872	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr10	105674636	105674637	chr10:105674637:T:C	rs117870775	T	C	T	Hoxd9.mouse_homeodomain_3	0	1	-	8.69304884965439	9.305184528107661	ATCGTAAAA
chr10	105727281	105727282	chr10:105727282:A:G	rs552362855	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr10	106436628	106436629	chr10:106436629:G:A	rs764361887	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr10	106494611	106494612	chr10:106494612:T:A	rs148354896	T	A	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr10	106747018	106747019	chr10:106747019:C:G	rs9888129	C	G	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr10	106774572	106774573	chr10:106774573:C:T	rs12262941	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr10	107826285	107826286	chr10:107826286:T:A	rs12784648	T	A	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	107866307	107866308	chr10:107866308:G:A	rs1834180	G	A	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr10	109259592	109259593	chr10:109259593:G:A	rs11194519	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr10	110034795	110034796	chr10:110034796:T:C	rs1349348	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr10	110706151	110706152	chr10:110706152:A:C	rs4918569	A	C	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr10	110765736	110765737	chr10:110765737:G:A	rs72823885	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr10	110765742	110765743	chr10:110765743:G:C	rs2027417	G	C	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr10	111100632	111100633	chr10:111100633:A:G	rs1343451	A	G	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr10	111142395	111142396	chr10:111142396:G:C	rs1335713	G	C	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr10	111630761	111630762	chr10:111630762:G:A	rs75404805	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr10	111707369	111707370	chr10:111707370:C:A	rs142107608	C	A	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr10	111743720	111743721	chr10:111743721:C:T	rs10885255	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr10	112792632	112792633	chr10:112792633:G:A	rs10787462	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr10	112793837	112793838	chr10:112793838:G:A	rs10885383	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.911344677288588	GTCGTAAAA
chr10	113412360	113412361	chr10:113412361:A:G	rs1933627	A	G	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr10	113593492	113593493	chr10:113593493:C:T	rs4918858	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr10	114648652	114648653	chr10:114648653:A:C	rs4751625	A	C	C	Hoxd9.mouse_homeodomain_3	6	1	+	7.589037152396075	3.884108087287332	CTCGTAAAT
chr10	114902347	114902348	chr10:114902348:T:C	rs11196975	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr10	115767049	115767050	chr10:115767050:A:G	rs2960692	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr10	115844985	115844986	chr10:115844986:T:G	rs80231359	T	G	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr10	116000497	116000498	chr10:116000498:G:A	rs180659	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr10	116260553	116260554	chr10:116260554:A:C	rs12774375	A	C	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr10	117214004	117214005	chr10:117214005:C:T	rs11197928	C	T	c	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr10	117262225	117262226	chr10:117262226:C:T	rs2015586	C	T	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr10	117457559	117457560	chr10:117457560:G:A	rs1224283945	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr10	117596915	117596916	chr10:117596916:T:G	rs72827843	T	G	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr10	119293395	119293396	chr10:119293396:G:A	rs10128498	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr10	120012824	120012825	chr10:120012825:C:T	rs151254937	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr10	120266230	120266231	chr10:120266231:G:A	rs79097168	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr10	120393036	120393037	chr10:120393037:C:T	rs149100820	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr10	120734208	120734209	chr10:120734209:C:G	rs2997237	C	G	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr10	120924750	120924751	chr10:120924751:T:C	rs4752475	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.491880116855494	CTCATAAAA
chr10	121568358	121568359	chr10:121568359:G:C	rs10510096	G	C	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr10	121670802	121670803	chr10:121670803:C:A	rs10886965	C	A	c	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr10	122018623	122018624	chr10:122018624:A:C	rs11200336	A	C	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr10	122033545	122033546	chr10:122033546:T:C	rs3862115	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr10	122120019	122120020	chr10:122120020:G:A	rs78080037	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr10	122120028	122120029	chr10:122120029:G:A	rs10887078	G	A	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr10	123774588	123774589	chr10:123774589:C:T	rs60540232	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr10	123841345	123841346	chr10:123841346:C:T	rs115350322	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr10	123842458	123842459	chr10:123842459:G:A	rs17679897	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr10	123907011	123907012	chr10:123907012:G:A	rs77904999	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr10	124186996	124186997	chr10:124186997:A:G	rs1027866902	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr10	124261623	124261624	chr10:124261624:T:C	rs7901444	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr10	124307978	124307979	chr10:124307979:C:T	rs7087093	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr10	124308008	124308009	chr10:124308009:G:T	rs61861804	G	T	g	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr10	124496418	124496419	chr10:124496419:T:G	rs12569498	T	G	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr10	124806473	124806474	chr10:124806474:A:T	rs77425901	A	T	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr10	124864245	124864246	chr10:124864246:G:A	rs112240051	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr10	124917628	124917629	chr10:124917629:C:G	rs546553500	C	G	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr10	124917632	124917633	chr10:124917633:G:T	rs752524325	G	T	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr10	124960946	124960947	chr10:124960947:A:G	rs17152411	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr10	124997635	124997636	chr10:124997636:A:G	rs7904165	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr10	125013384	125013385	chr10:125013385:C:T	rs56163718	C	T	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr10	125041644	125041645	chr10:125041645:T:A	rs4962424	T	A	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr10	125042221	125042222	chr10:125042222:C:A	rs191546475	C	A	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr10	125137033	125137034	chr10:125137034:A:G	rs1715873	A	G	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr10	125412098	125412099	chr10:125412099:G:A	rs11244456	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr10	126121960	126121961	chr10:126121961:A:G	rs75896002	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr10	126242250	126242251	chr10:126242251:G:A	rs6597749	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr10	126273032	126273033	chr10:126273033:G:A	rs7095359	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.911344677288588	GTCGTAAAA
chr10	126635112	126635113	chr10:126635113:A:C	rs1865898	A	C	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr10	126644211	126644212	chr10:126644212:T:A	rs4962585	T	A	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr10	126934732	126934733	chr10:126934733:T:C	rs929389664	T	C	t	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr10	128981752	128981753	chr10:128981753:G:A	rs78569347	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr10	129043828	129043829	chr10:129043829:T:C	rs11598539	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr10	129513719	129513720	chr10:129513720:A:G	rs7920272	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr10	129660964	129660965	chr10:129660965:G:A	rs9299872	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr10	129760948	129760949	chr10:129760949:G:T	rs3793906	G	T	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr10	129760970	129760971	chr10:129760971:G:A	rs3793907	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr10	129954318	129954319	chr10:129954319:C:T	rs11017029	C	T	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr10	130252462	130252463	chr10:130252463:G:A	rs7084068	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr10	130330941	130330942	chr10:130330942:G:C	rs78482916	G	C	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr10	130883415	130883416	chr10:130883416:C:T	rs10741231	C	T	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr10	130884465	130884466	chr10:130884466:T:C	rs4751295	T	C	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr10	130937077	130937078	chr10:130937078:C:T	rs74163232	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr10	131198416	131198417	chr10:131198417:G:A	rs4751344	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr10	131198426	131198427	chr10:131198427:C:T	rs12356041	C	T	c	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr10	131803916	131803917	chr10:131803917:G:A	rs67169268	G	A	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr10	131803927	131803928	chr10:131803928:T:C	rs79760331	T	C	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.911344677288588	9.305184528107661	GTTGTAAAA
chr10	132063514	132063515	chr10:132063515:C:T	rs576071685	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr10	132098813	132098814	chr10:132098814:A:G	rs9419360	A	G	g	Hoxd9.mouse_homeodomain_3	4	1	-	8.014132140725302	4.851558275814322	GTCGTAAAT
chr10	132183080	132183081	chr10:132183081:A:G	rs2637653	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	132383678	132383679	chr10:132383679:C:T	rs571226623	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr10	132463649	132463650	chr10:132463650:A:G	rs7918074	A	G	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr10	132542043	132542044	chr10:132542044:C:T	rs72854967	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr10	132593334	132593335	chr10:132593335:G:A	rs2819714	G	A	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr10	133040296	133040297	chr10:133040297:G:A	rs1294420525	G	A	g	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr10	133307472	133307473	chr10:133307473:G:A	rs72864798	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr11	341392	341393	chr11:341393:A:G	rs11246082	A	G	-	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr11	1206405	1206406	chr11:1206406:G:C	rs28449732	G	C	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr11	1206444	1206445	chr11:1206445:C:T	rs55900977	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr11	1353901	1353902	chr11:1353902:C:T	rs72849411	C	T	-	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr11	1376788	1376789	chr11:1376789:G:A	rs10832843	G	A	g	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr11	2074568	2074569	chr11:2074569:A:G	rs6578975	A	G	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr11	2203433	2203434	chr11:2203434:G:A	rs72853963	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr11	2203450	2203451	chr11:2203451:C:T	rs7480065	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr11	2774232	2774233	chr11:2774233:C:T	chr11:2774233:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr11	2982431	2982432	chr11:2982432:T:C	rs79795377	T	C	t	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr11	3154493	3154494	chr11:3154494:T:C	rs145691673	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr11	3221676	3221677	chr11:3221677:G:A	rs11602794	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr11	3221702	3221703	chr11:3221703:C:T	rs10833491	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr11	4639490	4639491	chr11:4639491:G:C	rs10836399	G	C	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr11	5452583	5452584	chr11:5452584:G:A	rs10838132	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr11	5674873	5674874	chr11:5674874:G:T	rs10742766	G	T	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr11	5761095	5761096	chr11:5761096:G:A	rs144166021	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr11	7004591	7004592	chr11:7004592:G:A	rs7925309	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr11	7186482	7186483	chr11:7186483:T:C	rs59362621	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr11	7555284	7555285	chr11:7555285:T:G	rs142240503	T	G	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr11	7703888	7703889	chr11:7703889:C:T	rs114540762	C	T	c	Hoxd9.mouse_homeodomain_3	0	1	+	7.589037152396075	3.1928402743600652	CTCGTAAAT
chr11	7703906	7703907	chr11:7703907:C:T	rs11041539	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr11	8075065	8075066	chr11:8075066:A:C	rs2360074	A	C	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr11	8442074	8442075	chr11:8442075:G:A	rs7101471	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	7.026203907121121	GTCATAAAA
chr11	8688696	8688697	chr11:8688697:G:T	rs10769941	G	T	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr11	8815253	8815254	chr11:8815254:C:T	rs10769962	C	T	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr11	9018078	9018079	chr11:9018079:C:T	rs74774796	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr11	9775598	9775599	chr11:9775599:A:T	rs4910501	A	T	a	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr11	9775602	9775603	chr11:9775603:T:G	rs4910502	T	G	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr11	10565724	10565725	chr11:10565725:C:G	rs55657367	C	G	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr11	10656306	10656307	chr11:10656307:T:C	rs10840458	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	1.8045007974963716	GTCATAAAA
chr11	10844479	10844480	chr11:10844480:C:T	rs12418898	C	T	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr11	10897663	10897664	chr11:10897664:T:G	rs1533877	T	G	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr11	10899948	10899949	chr11:10899949:C:T	rs189134569	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr11	10899964	10899965	chr11:10899965:A:G	rs7932891	A	G	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr11	11356907	11356908	chr11:11356908:C:T	rs10831602	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr11	12044433	12044434	chr11:12044434:T:C	chr11:12044434:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr11	12164370	12164371	chr11:12164371:C:G	rs2016388	C	G	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr11	12260672	12260673	chr11:12260673:T:G	rs147442467	T	G	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.911344677288588	1.2958017168447644	GTTGTAAAA
chr11	12480913	12480914	chr11:12480914:C:G	rs12786802	C	G	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr11	12845658	12845659	chr11:12845659:C:G	rs60080838	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr11	12845666	12845667	chr11:12845667:T:C	rs1866706	T	C	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr11	12845670	12845671	chr11:12845671:G:A	rs1077267	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr11	13095210	13095211	chr11:13095211:G:A	rs1441338	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr11	13469162	13469163	chr11:13469163:C:T	rs12365136	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr11	13924401	13924402	chr11:13924402:G:A	rs1027835	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr11	14036730	14036731	chr11:14036731:G:A	rs12283632	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.087808497260832	6.69396864644176	GTCGTAAAC
chr11	14822582	14822583	chr11:14822583:A:G	rs7928396	A	G	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr11	15484567	15484568	chr11:15484568:G:A	rs7949952	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	6.268873658112532	CTCGTAAAC
chr11	15883130	15883131	chr11:15883131:T:C	rs74465863	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr11	17208841	17208842	chr11:17208842:T:G	rs2354863	T	G	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr11	17279296	17279297	chr11:17279297:T:G	rs7127347	T	G	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr11	18775823	18775824	chr11:18775824:T:C	rs530927582	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr11	19398997	19398998	chr11:19398998:C:T	rs7115842	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr11	19444454	19444455	chr11:19444455:T:C	rs10766560	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr11	19725460	19725461	chr11:19725461:T:C	rs7105359	T	C	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr11	19891234	19891235	chr11:19891235:G:A	rs2165798	G	A	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr11	20030778	20030779	chr11:20030779:C:T	rs77003597	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr11	20531053	20531054	chr11:20531054:A:G	rs73441173	A	G	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr11	22349709	22349710	chr11:22349710:A:G	rs2665691	A	G	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr11	22556427	22556428	chr11:22556428:A:G	rs12366112	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr11	22674444	22674445	chr11:22674445:C:T	rs1121196	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr11	22830205	22830206	chr11:22830206:C:T	rs2286807	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr11	23237791	23237792	chr11:23237792:T:C	rs10833992	T	C	t	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr11	24198686	24198687	chr11:24198687:A:G	rs370099457	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr11	24415441	24415442	chr11:24415442:T:C	rs11607179	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr11	24454874	24454875	chr11:24454875:C:A	rs17306908	C	A	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr11	24559497	24559498	chr11:24559498:A:G	rs11028012	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr11	24623212	24623213	chr11:24623213:A:C	chr11:24623213:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr11	25095008	25095009	chr11:25095009:G:C	rs61894712	G	C	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr11	25737273	25737274	chr11:25737274:C:T	rs10834774	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr11	26335816	26335817	chr11:26335817:A:G	rs4922755	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr11	26570888	26570889	chr11:26570889:G:C	rs7130788	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	8.420043757940196	CTCATAAAA
chr11	27371026	27371027	chr11:27371027:T:C	rs1531557	T	C	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr11	27921695	27921696	chr11:27921696:A:G	rs116374680	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	6.916975105184722	GTCATAAAA
chr11	29255776	29255777	chr11:29255777:T:C	rs16918883	T	C	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr11	29512126	29512127	chr11:29512127:G:A	rs2181878	G	A	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr11	29913559	29913560	chr11:29913560:C:T	rs7117838	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr11	30451999	30452000	chr11:30452000:G:T	rs72885520	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr11	30741388	30741389	chr11:30741389:T:C	rs613950	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	7.238869377514717	GTCATAAAA
chr11	30759383	30759384	chr11:30759384:C:T	rs638196	C	T	c	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr11	31674787	31674788	chr11:31674788:A:G	rs2862801	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.491880116855494	CTCATAAAA
chr11	32100473	32100474	chr11:32100474:T:G	rs2073223	T	G	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr11	32388193	32388194	chr11:32388194:A:T	rs5030323	A	T	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.911344677288588	7.543531141267286	GTTGTAAAA
chr11	32891110	32891111	chr11:32891111:T:C	rs2746036	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	7.238869377514717	GTCATAAAA
chr11	33044000	33044001	chr11:33044001:G:A	rs7926030	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr11	33064152	33064153	chr11:33064153:G:A	rs961644	G	A	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr11	33168839	33168840	chr11:33168840:C:A	rs72906792	C	A	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr11	33412350	33412351	chr11:33412351:G:A	rs731738	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr11	33804636	33804637	chr11:33804637:T:C	rs4755342	T	C	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr11	33868184	33868185	chr11:33868185:G:A	rs11825540	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr11	33991250	33991251	chr11:33991251:T:C	rs4316483	T	C	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr11	34223139	34223140	chr11:34223140:C:T	rs115878609	C	T	c	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr11	34223154	34223155	chr11:34223155:C:T	rs1883963	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr11	34407258	34407259	chr11:34407259:G:A	rs12276378	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr11	34417295	34417296	chr11:34417296:G:A	rs12361866	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr11	34652384	34652385	chr11:34652385:G:C	rs16925992	G	C	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr11	35030381	35030382	chr11:35030382:T:C	rs2785161	T	C	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr11	35030395	35030396	chr11:35030396:C:A	rs2732522	C	A	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr11	35558756	35558757	chr11:35558757:T:C	rs115782918	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr11	36333541	36333542	chr11:36333542:C:G	rs7124910	C	G	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	8.420043757940196	CTCATAAAA
chr11	36333553	36333554	chr11:36333554:A:C	rs76760727	A	C	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr11	36703151	36703152	chr11:36703152:A:G	rs74479218	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	8.420043757940196	1.8045007974963716	GTCATAAAA
chr11	36868189	36868190	chr11:36868190:A:G	rs7934277	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr11	37390677	37390678	chr11:37390678:T:C	rs7944014	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr11	37680958	37680959	chr11:37680959:C:T	rs10836845	C	T	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr11	38229382	38229383	chr11:38229383:C:T	rs142678270	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr11	39114616	39114617	chr11:39114617:C:T	rs41365446	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr11	39375113	39375114	chr11:39375114:T:C	rs149848453	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr11	39933083	39933084	chr11:39933084:C:T	rs1461789	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.232433356227913	6.838593505408839	GTCGTTAAA
chr11	40281493	40281494	chr11:40281494:C:T	rs192136056	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr11	42709084	42709085	chr11:42709085:A:G	rs10837917	A	G	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr11	43951058	43951059	chr11:43951059:A:G	rs7126420	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr11	44316704	44316705	chr11:44316705:C:T	rs4568996	C	T	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr11	44506520	44506521	chr11:44506521:G:A	rs11038037	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr11	44761769	44761770	chr11:44761770:C:T	rs16938072	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr11	45413642	45413643	chr11:45413643:T:C	rs114992836	T	C	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr11	45520031	45520032	chr11:45520032:G:A	rs2863696	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr11	46538179	46538180	chr11:46538180:T:C	rs11038913	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr11	47298153	47298154	chr11:47298154:A:G	rs76495350	A	G	a	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr11	47298154	47298155	chr11:47298155:C:T	rs17726390	C	T	t	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr11	47827879	47827880	chr11:47827880:C:G	rs4752871	C	G	c	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr11	47860788	47860789	chr11:47860789:G:A	rs10838784	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	6.906634116835357	5.512794266016282	GCCGTAAAC
chr11	48105600	48105601	chr11:48105601:T:C	rs73466894	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr11	50298361	50298362	chr11:50298362:C:T	rs1327420982	C	T	c	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr11	57231497	57231498	chr11:57231498:G:A	rs74719605	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr11	57938635	57938636	chr11:57938636:A:G	rs7109912	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr11	58659724	58659725	chr11:58659725:G:A	rs7127513	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr11	58692074	58692075	chr11:58692075:G:A	rs590157	G	A	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr11	60185560	60185561	chr11:60185561:A:T	rs116021174	A	T	.	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr11	60907557	60907558	chr11:60907558:T:C	rs1236521	T	C	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr11	61183821	61183822	chr11:61183822:A:G	rs4939503	A	G	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr11	61325884	61325885	chr11:61325885:C:A	rs7123049	C	A	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr11	62060877	62060878	chr11:62060878:T:G	rs4102511	T	G	t	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr11	62123670	62123671	chr11:62123671:A:C	rs192968183	A	C	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr11	62123678	62123679	chr11:62123679:G:A	chr11:62123679:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr11	62176949	62176950	chr11:62176950:T:C	rs12364840	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr11	62796536	62796537	chr11:62796537:T:C	rs4693	T	C	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr11	62831880	62831881	chr11:62831881:A:T	rs551133512	A	T	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr11	62831882	62831883	chr11:62831883:T:C	rs114516590	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr11	62831889	62831890	chr11:62831890:C:T	rs73487820	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr11	62899133	62899134	chr11:62899134:T:G	rs2507821	T	G	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr11	63001510	63001511	chr11:63001511:C:A	rs984008563	C	A	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr11	63551252	63551253	chr11:63551253:T:C	rs4471424	T	C	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr11	63888373	63888374	chr11:63888374:C:T	rs1872772	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr11	64023458	64023459	chr11:64023459:C:T	rs484201	C	T	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr11	64126581	64126582	chr11:64126582:T:C	rs2622431	T	C	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr11	65446386	65446387	chr11:65446387:G:A	rs144553711	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr11	65812198	65812199	chr11:65812199:G:A	rs10896053	G	A	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr11	66172356	66172357	chr11:66172357:C:T	rs931010483	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr11	66172394	66172395	chr11:66172395:T:C	rs145862334	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr11	66604346	66604347	chr11:66604347:C:T	chr11:66604347:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr11	66607203	66607204	chr11:66607204:T:G	chr11:66607204:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr11	67507643	67507644	chr11:67507644:G:A	rs776509860	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr11	67529728	67529729	chr11:67529729:C:T	rs191731494	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr11	67581848	67581849	chr11:67581849:C:T	rs7949394	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr11	67765723	67765724	chr11:67765724:T:C	rs10750808	T	C	-	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr11	67803583	67803584	chr11:67803584:C:T	rs111348682	C	T	-	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr11	68550391	68550392	chr11:68550392:G:C	rs10896343	G	C	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr11	68934110	68934111	chr11:68934111:T:C	rs751879	T	C	T	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr11	70688361	70688362	chr11:70688362:A:G	rs78667819	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	8.420043757940196	1.8045007974963716	GTCATAAAA
chr11	71496158	71496159	chr11:71496159:C:G	rs4944998	C	G	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr11	71712586	71712587	chr11:71712587:A:G	rs11825370	A	G	g	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr11	72132652	72132653	chr11:72132653:G:A	rs12293195	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr11	74325707	74325708	chr11:74325708:C:T	rs634243	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr11	74325742	74325743	chr11:74325743:G:A	chr11:74325743:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr11	75635060	75635061	chr11:75635061:C:T	rs17134192	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr11	76628602	76628603	chr11:76628603:C:T	rs17135049	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr11	76628619	76628620	chr11:76628620:C:T	rs10899240	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr11	76992380	76992381	chr11:76992381:T:A	rs11237052	T	A	t	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr11	77164798	77164799	chr11:77164799:C:T	rs7104528	C	T	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr11	77300086	77300087	chr11:77300087:G:A	rs561537412	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr11	77672378	77672379	chr11:77672379:G:C	rs72947606	G	C	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr11	77995056	77995057	chr11:77995057:C:G	chr11:77995057:C:G	C	G	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr11	77995085	77995086	chr11:77995086:T:C	rs73501892	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr11	78237048	78237049	chr11:78237049:T:C	rs1017908	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr11	79051277	79051278	chr11:79051278:C:T	rs76748981	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr11	79511312	79511313	chr11:79511313:C:T	rs565277675	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr11	80918629	80918630	chr11:80918630:C:T	rs10792526	C	T	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr11	81443267	81443268	chr11:81443268:T:C	rs11232675	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr11	81852093	81852094	chr11:81852094:G:A	rs73519920	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr11	82907474	82907475	chr11:82907475:G:A	rs10898054	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr11	83272623	83272624	chr11:83272624:A:G	rs488662	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr11	83276164	83276165	chr11:83276165:T:G	rs598676	T	G	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	5.724807546727723	CTCATAAAA
chr11	84212973	84212974	chr11:84212974:G:T	rs79941953	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.23329538277059	CTCATAAAA
chr11	84802839	84802840	chr11:84802840:A:G	rs118048952	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr11	85694474	85694475	chr11:85694475:G:A	rs1658	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr11	85989285	85989286	chr11:85989286:C:G	rs17817153	C	G	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr11	86079213	86079214	chr11:86079214:A:G	rs72959906	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr11	86160120	86160121	chr11:86160121:G:T	rs56371467	G	T	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr11	86784332	86784333	chr11:86784333:T:C	chr11:86784333:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr11	86795944	86795945	chr11:86795945:T:A	rs2186617	T	A	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr11	86924398	86924399	chr11:86924399:G:C	rs10792882	G	C	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr11	87081847	87081848	chr11:87081848:A:C	rs55790509	A	C	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr11	87358588	87358589	chr11:87358589:A:G	rs10792946	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr11	87661557	87661558	chr11:87661558:A:C	rs900550950	A	C	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr11	87943025	87943026	chr11:87943026:G:A	rs958680396	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr11	88354188	88354189	chr11:88354189:C:T	rs7128352	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr11	89310765	89310766	chr11:89310766:C:T	rs537074502	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr11	90476483	90476484	chr11:90476484:A:C	rs117376129	A	C	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	5.8130632233164405	CTCATAAAA
chr11	90672160	90672161	chr11:90672161:A:G	rs10501731	A	G	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr11	90701022	90701023	chr11:90701023:C:T	rs1783788	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	6.195197301577001	CTCGTAAAT
chr11	91232460	91232461	chr11:91232461:A:G	rs4131655	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr11	91684969	91684970	chr11:91684970:C:T	rs4081910	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr11	91860289	91860290	chr11:91860290:C:A	rs72972768	C	A	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr11	92149136	92149137	chr11:92149137:C:T	rs1019440082	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	7.026203907121121	GTTGTAAAA
chr11	92149137	92149138	chr11:92149138:A:G	rs1603484	A	G	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.911344677288588	9.305184528107661	GTTGTAAAA
chr11	93498222	93498223	chr11:93498223:C:G	rs34819559	C	G	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr11	94353087	94353088	chr11:94353088:T:C	rs615465	T	C	t	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr11	94365649	94365650	chr11:94365650:G:A	rs4360663	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr11	94493794	94493795	chr11:94493795:G:C	chr11:94493795:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr11	94493809	94493810	chr11:94493810:C:A	rs1410623578	C	A	C	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.1449807299949795	GCCGTAAAC
chr11	94697329	94697330	chr11:94697330:G:A	rs113031938	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr11	94805878	94805879	chr11:94805879:A:G	rs3893908	A	G	G	Hoxd9.mouse_homeodomain_3	6	1	+	7.802115875352188	3.8241359010339524	GTCGTAAAG
chr11	94974199	94974200	chr11:94974200:T:C	rs1486221	T	C	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr11	95069699	95069700	chr11:95069700:C:A	rs78054640	C	A	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr11	95092367	95092368	chr11:95092368:A:G	rs627275	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr11	95341526	95341527	chr11:95341527:G:A	rs12792729	G	A	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr11	95460138	95460139	chr11:95460139:G:A	rs77159499	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr11	95549714	95549715	chr11:95549715:G:C	rs7949779	G	C	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr11	96014031	96014032	chr11:96014032:T:C	rs111265141	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr11	96038045	96038046	chr11:96038046:T:C	rs532151	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr11	96060536	96060537	chr11:96060537:C:T	rs6483476	C	T	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr11	96148909	96148910	chr11:96148910:T:C	rs12793288	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.176266619256224	4.013692754345243	GGCGTAAAA
chr11	96178227	96178228	chr11:96178228:A:G	rs483884	A	G	G	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	6.813774389185489	CTCATAAAA
chr11	97344978	97344979	chr11:97344979:C:G	rs7113960	C	G	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr11	98979319	98979320	chr11:98979320:A:G	rs11217903	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr11	99803810	99803811	chr11:99803811:A:G	rs117553310	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr11	100263075	100263076	chr11:100263076:C:A	rs1944191	C	A	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr11	100601445	100601446	chr11:100601446:T:C	rs1145417	T	C	t	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr11	100624510	100624511	chr11:100624511:A:C	rs67656926	A	C	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr11	101218254	101218255	chr11:101218255:T:C	rs11518485	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr11	101264884	101264885	chr11:101264885:C:T	rs1943770	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr11	101511209	101511210	chr11:101511210:T:G	rs7116629	T	G	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr11	101715572	101715573	chr11:101715573:A:C	rs78115389	A	C	A	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr11	101800654	101800655	chr11:101800655:A:T	rs7117680	A	T	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr11	101818031	101818032	chr11:101818032:A:C	rs4237604	A	C	C	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	6.149902535056951	GTCATAAAA
chr11	102119675	102119676	chr11:102119676:A:G	rs7119330	A	G	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr11	102474267	102474268	chr11:102474268:A:G	rs567670	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr11	102824740	102824741	chr11:102824741:A:C	rs1034375	A	C	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr11	103432553	103432554	chr11:103432554:C:T	rs505677	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr11	103432557	103432558	chr11:103432558:C:T	rs505672	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr11	103988916	103988917	chr11:103988917:G:A	rs651979	G	A	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr11	104011176	104011177	chr11:104011177:G:A	rs78713734	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr11	104094917	104094918	chr11:104094918:G:A	rs117544092	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr11	105064275	105064276	chr11:105064276:T:C	rs472886	T	C	.	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr11	105989835	105989836	chr11:105989836:G:T	chr11:105989836:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr11	106153210	106153211	chr11:106153211:G:A	rs1940762	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr11	109031334	109031335	chr11:109031335:T:C	rs6589047	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	6.73017029686311	GTTGTAAAA
chr11	109042250	109042251	chr11:109042251:T:G	rs12576390	T	G	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr11	109695796	109695797	chr11:109695797:A:T	rs77624355	A	T	a	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr11	110075705	110075706	chr11:110075706:A:C	rs7116945	A	C	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr11	110174293	110174294	chr11:110174294:C:A	rs183455372	C	A	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr11	110421858	110421859	chr11:110421859:C:A	rs4309126	C	A	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	6.931395462814012	ATCGTAAAA
chr11	110425428	110425429	chr11:110425429:T:C	rs10891103	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr11	110428646	110428647	chr11:110428647:C:A	rs3782053	C	A	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr11	110853530	110853531	chr11:110853531:C:T	rs150510351	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr11	111002687	111002688	chr11:111002688:G:C	rs12790918	G	C	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	4.221738893972249	CTCGTAAAG
chr11	111335028	111335029	chr11:111335029:C:G	rs569329909	C	G	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr11	111797531	111797532	chr11:111797532:A:C	rs3867466	A	C	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr11	111797552	111797553	chr11:111797553:G:A	rs625017	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr11	111871029	111871030	chr11:111871030:G:A	chr11:111871030:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr11	112577169	112577170	chr11:112577170:C:T	rs12365993	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr11	112942583	112942584	chr11:112942584:G:A	rs10891477	G	A	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr11	113316156	113316157	chr11:113316157:C:T	rs7130072	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr11	114215239	114215240	chr11:114215240:A:G	rs552007	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr11	114400484	114400485	chr11:114400485:T:C	rs606671	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.8073383678986845	6.304269715143211	CTCGTTAAA
chr11	114400499	114400500	chr11:114400500:C:T	rs17629751	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr11	114818751	114818752	chr11:114818752:C:T	rs570243432	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr11	115221089	115221090	chr11:115221090:G:A	rs979420314	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr11	115349518	115349519	chr11:115349519:C:T	rs11215509	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr11	115379785	115379786	chr11:115379786:G:A	rs377356602	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr11	115941452	115941453	chr11:115941453:A:G	rs1145180	A	G	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr11	116704756	116704757	chr11:116704757:G:A	rs4938301	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr11	116865962	116865963	chr11:116865963:A:G	rs573549	A	G	a	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr11	117423989	117423990	chr11:117423990:A:G	rs4420302	A	G	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr11	117539043	117539044	chr11:117539044:T:C	rs142414349	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr11	117675962	117675963	chr11:117675963:T:C	rs12225758	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr11	117782279	117782280	chr11:117782280:G:A	rs78175126	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr11	118688433	118688434	chr11:118688434:G:A	rs151272308	G	A	g	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr11	119239985	119239986	chr11:119239986:G:T	rs11217204	G	T	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr11	119730602	119730603	chr11:119730603:G:A	rs4936496	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.087808497260832	7.202667727093368	GTCGTAAAC
chr11	119833061	119833062	chr11:119833062:C:A	rs1665777	C	A	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr11	120059921	120059922	chr11:120059922:C:T	rs10892525	C	T	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr11	120338676	120338677	chr11:120338677:G:A	rs4938800	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr11	122069267	122069268	chr11:122069268:A:G	rs1944463	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr11	122161259	122161260	chr11:122161260:C:G	rs12273515	C	G	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr11	122341109	122341110	chr11:122341110:A:C	rs75573120	A	C	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr11	122341156	122341157	chr11:122341157:A:T	rs1944597	A	T	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr11	122599717	122599718	chr11:122599718:A:T	rs11607707	A	T	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr11	122931780	122931781	chr11:122931781:A:C	rs7119411	A	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr11	123026646	123026647	chr11:123026647:T:G	rs736973	T	G	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr11	123461110	123461111	chr11:123461111:A:G	rs113740647	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr11	124763268	124763269	chr11:124763269:T:A	rs143270232	T	A	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr11	124893474	124893475	chr11:124893475:G:A	rs79224470	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr11	126490629	126490630	chr11:126490630:G:A	rs1000255	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr11	127183701	127183702	chr11:127183702:T:A	rs2513442	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr11	127183706	127183707	chr11:127183707:G:T	rs73037805	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	3.0900528109233516	GTTGTAAAA
chr11	127267556	127267557	chr11:127267557:T:A	rs1986428	T	A	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr11	127525083	127525084	chr11:127525084:G:C	rs1025422	G	C	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr11	128163477	128163478	chr11:128163478:G:A	rs7950742	G	A	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr11	128247683	128247684	chr11:128247684:C:A	rs12577896	C	A	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr11	128305739	128305740	chr11:128305740:G:A	rs115923008	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr11	128904872	128904873	chr11:128904873:A:G	rs77857138	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr11	129061263	129061264	chr11:129061264:A:C	rs527953100	A	C	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr11	129364732	129364733	chr11:129364733:A:T	rs2131603	A	T	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr11	129611140	129611141	chr11:129611141:T:C	rs141125147	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr11	129639482	129639483	chr11:129639483:G:A	rs147828238	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr11	130145432	130145433	chr11:130145433:G:A	rs111589537	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr11	130621521	130621522	chr11:130621522:C:T	rs11222225	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.662713508931605	6.268873658112532	CTCGTAAAC
chr11	130770061	130770062	chr11:130770062:C:T	rs7127732	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr11	130883798	130883799	chr11:130883799:G:A	rs1893016	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr11	130916402	130916403	chr11:130916403:G:A	rs116096558	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	6.906634116835357	6.294498438382084	GCCGTAAAC
chr11	130916412	130916413	chr11:130916413:T:C	rs7106771	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr11	130916429	130916430	chr11:130916430:C:T	rs561337005	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr11	131522117	131522118	chr11:131522118:A:T	rs388076	A	T	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr11	131522128	131522129	chr11:131522129:C:T	rs414864	C	T	T	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr11	131646203	131646204	chr11:131646204:G:A	rs1567082	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr11	131669385	131669386	chr11:131669386:A:G	rs789517	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr11	131998271	131998272	chr11:131998272:G:A	rs756629	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr11	132223420	132223421	chr11:132223421:C:G	rs3099765	C	G	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr11	132623599	132623600	chr11:132623600:C:T	rs751655	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr11	132994283	132994284	chr11:132994284:T:C	rs9737546	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr11	133253567	133253568	chr11:133253568:G:C	rs9736335	G	C	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	4.221738893972249	CTCGTAAAG
chr11	133678046	133678047	chr11:133678047:T:G	rs10894724	T	G	G	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	5.866030860759529	CTCATAAAA
chr11	134254177	134254178	chr11:134254178:A:T	rs1130172	A	T	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	6.589040073520056	GTCATAAAA
chr11	134368494	134368495	chr11:134368495:G:C	rs3741100	G	C	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr11	135002495	135002496	chr11:135002496:G:T	rs77745949	G	T	g	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr11	135033875	135033876	chr11:135033876:G:A	rs1478752	G	A	g	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr12	537728	537729	chr12:537729:C:G	rs57717711	C	G	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr12	1203769	1203770	chr12:1203770:T:C	rs7976525	T	C	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr12	1357183	1357184	chr12:1357184:C:T	rs9669370	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr12	1374722	1374723	chr12:1374723:C:T	rs78939211	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr12	1374727	1374728	chr12:1374728:G:A	rs2051843	G	A	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr12	2642443	2642444	chr12:2642444:T:C	rs143816715	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr12	2970843	2970844	chr12:2970844:G:C	rs73246948	G	C	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.014132140725302	7.589037152396075	GTCGTAAAT
chr12	2970846	2970847	chr12:2970847:G:A	rs116127048	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr12	3520912	3520913	chr12:3520913:G:C	rs6489474	G	C	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	4.756062684237877	GTTGTAAAA
chr12	3700951	3700952	chr12:3700952:T:C	rs11609130	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr12	3966849	3966850	chr12:3966850:T:C	rs11836084	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr12	4116203	4116204	chr12:4116204:C:T	rs74061528	C	T	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr12	4224404	4224405	chr12:4224405:G:A	rs75398723	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr12	4593977	4593978	chr12:4593978:C:T	rs730065	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr12	4918890	4918891	chr12:4918891:T:C	rs2359473	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr12	5036487	5036488	chr12:5036488:A:G	rs9788172	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr12	5165492	5165493	chr12:5165493:C:G	rs1479485	C	G	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr12	5437648	5437649	chr12:5437649:G:A	rs115435311	G	A	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr12	5584621	5584622	chr12:5584622:C:A	rs1014432	C	A	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr12	5838710	5838711	chr12:5838711:G:A	rs61908361	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr12	6160387	6160388	chr12:6160388:G:A	rs117589132	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr12	6190372	6190373	chr12:6190373:G:A	rs11614446	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr12	6303298	6303299	chr12:6303299:C:T	rs1243072814	C	T	c	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr12	6405802	6405803	chr12:6405803:C:T	rs35398641	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr12	7733055	7733056	chr12:7733056:G:A	rs7964329	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr12	7882167	7882168	chr12:7882168:C:T	rs7979608	C	T	c	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr12	8244648	8244649	chr12:8244649:C:G	rs149847309	C	G	.	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr12	8361439	8361440	chr12:8361440:C:T	rs12366681	C	T	.	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr12	8562485	8562486	chr12:8562486:G:T	rs78247542	G	T	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	4.872892697808469	CTCGTAAAT
chr12	9046851	9046852	chr12:9046852:A:T	rs7957626	A	T	a	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr12	9283042	9283043	chr12:9283043:T:C	rs7960104	T	C	.	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr12	9449715	9449716	chr12:9449716:C:T	rs956482946	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr12	9700597	9700598	chr12:9700598:G:A	rs12823653	G	A	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr12	9757852	9757853	chr12:9757853:A:T	rs61163981	A	T	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr12	10097766	10097767	chr12:10097767:G:A	rs3912645	G	A	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	10224835	10224836	chr12:10224836:G:A	rs10734821	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr12	10393554	10393555	chr12:10393555:T:C	rs73256286	T	C	T	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr12	11628476	11628477	chr12:11628477:G:A	rs10845395	G	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr12	11724997	11724998	chr12:11724998:A:G	rs4763720	A	G	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr12	11725023	11725024	chr12:11725024:G:A	rs12299673	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr12	11877371	11877372	chr12:11877372:A:G	rs2855711	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.880089539778433	7.37702088702296	CTCGTAAAA
chr12	12067703	12067704	chr12:12067704:T:C	rs17757816	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr12	12099143	12099144	chr12:12099144:T:G	rs1797647	T	G	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr12	12099178	12099179	chr12:12099179:T:G	rs367916967	T	G	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr12	12376930	12376931	chr12:12376931:A:G	rs11829597	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr12	12723176	12723177	chr12:12723177:C:A	chr12:12723177:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	6.931395462814012	ATCGTAAAA
chr12	12723176	12723177	chr12:12723177:C:G	rs1420023	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	2.1328813567502314	ATCGTAAAA
chr12	12922462	12922463	chr12:12922463:C:T	rs11613894	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr12	12922480	12922481	chr12:12922481:G:T	rs3944000	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	3.0900528109233516	GTTGTAAAA
chr12	14224583	14224584	chr12:14224584:G:A	rs7300394	G	A	g	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr12	14255597	14255598	chr12:14255598:C:G	rs113854090	C	G	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr12	14255619	14255620	chr12:14255620:G:C	rs75905550	G	C	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr12	14771594	14771595	chr12:14771595:G:C	rs181595499	G	C	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr12	14879085	14879086	chr12:14879086:C:T	rs11056227	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr12	14901480	14901481	chr12:14901481:A:G	rs12316046	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr12	14958743	14958744	chr12:14958744:T:A	rs115439320	T	A	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr12	15169733	15169734	chr12:15169734:T:C	rs7961224	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr12	16119836	16119837	chr12:16119837:C:T	rs1616257	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr12	16955234	16955235	chr12:16955235:T:G	rs77486175	T	G	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.124010147682185	1.5084671872383608	GCCGTAAAA
chr12	17609390	17609391	chr12:17609391:G:T	rs2437992	G	T	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	19369853	19369854	chr12:19369854:T:C	rs71539469	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	19451519	19451520	chr12:19451520:A:G	rs150799879	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr12	19516395	19516396	chr12:19516396:A:G	rs7971147	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	19516396	19516397	chr12:19516397:G:T	rs7971443	G	T	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr12	19652376	19652377	chr12:19652377:C:T	rs10161244	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr12	19800258	19800259	chr12:19800259:A:G	rs7316716	A	G	G	Hoxd9.mouse_homeodomain_3	5	1	+	8.420043757940196	1.8045007974963716	GTCATAAAA
chr12	20021538	20021539	chr12:20021539:C:T	rs2579298	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr12	20375508	20375509	chr12:20375509:G:A	rs1822753	G	A	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr12	20549196	20549197	chr12:20549197:T:A	rs11045300	T	A	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr12	20643741	20643742	chr12:20643742:G:A	rs11045360	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr12	21656513	21656514	chr12:21656514:G:A	rs4237915	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	22979734	22979735	chr12:22979735:G:A	rs7307965	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr12	23715597	23715598	chr12:23715598:A:C	rs76759418	A	C	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	24425585	24425586	chr12:24425586:A:G	rs11047431	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	25126339	25126340	chr12:25126340:C:T	rs2200402	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr12	25293893	25293894	chr12:25293894:A:T	rs71450471	A	T	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr12	25616361	25616362	chr12:25616362:A:C	rs2086279	A	C	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr12	25725649	25725650	chr12:25725650:G:A	rs7958191	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr12	25900036	25900037	chr12:25900037:A:G	rs2643928	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr12	25924938	25924939	chr12:25924939:C:G	rs112238943	C	G	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr12	25997553	25997554	chr12:25997554:C:T	rs11832469	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr12	26148551	26148552	chr12:26148552:G:A	rs2343074	G	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr12	26738986	26738987	chr12:26738987:G:A	rs11614123	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr12	26857583	26857584	chr12:26857584:G:A	rs11048747	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr12	27089558	27089559	chr12:27089559:C:T	rs41323744	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr12	27243956	27243957	chr12:27243957:T:C	rs947362536	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr12	27601533	27601534	chr12:27601534:C:G	rs17223967	C	G	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr12	27699225	27699226	chr12:27699226:C:T	rs537560121	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	7.911344677288588	GTCGTAAAA
chr12	27841499	27841500	chr12:27841500:G:A	rs11829884	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr12	27864588	27864589	chr12:27864589:A:C	rs258415	A	C	C	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	7.202667727093368	GTCATAAAA
chr12	28086640	28086641	chr12:28086641:T:G	rs10843092	T	G	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr12	28104607	28104608	chr12:28104608:G:A	rs78175654	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr12	28122016	28122017	chr12:28122017:T:C	rs79193397	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	28172370	28172371	chr12:28172371:A:G	rs11049398	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr12	28194843	28194844	chr12:28194844:C:T	rs4554927	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr12	28497631	28497632	chr12:28497632:C:T	rs10506036	C	T	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr12	29046022	29046023	chr12:29046023:C:T	rs67760969	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr12	29282399	29282400	chr12:29282400:C:G	rs12821498	C	G	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr12	29581729	29581730	chr12:29581730:C:T	rs159697	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr12	29581737	29581738	chr12:29581738:G:T	rs159698	G	T	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr12	30457791	30457792	chr12:30457792:C:G	rs77353114	C	G	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	30908927	30908928	chr12:30908928:G:A	rs74596162	G	A	G	Hoxd9.mouse_homeodomain_3	1	1	-	7.698915159352956	8.880089539778433	CCCGTAAAA
chr12	31074545	31074546	chr12:31074546:G:T	rs7305885	G	T	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr12	31816151	31816152	chr12:31816152:G:T	rs728944	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	7.807908079486923	CTCATAAAA
chr12	32689941	32689942	chr12:32689942:G:C	rs7310437	G	C	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	4.433755159345364	CTCGTAAAT
chr12	33108131	33108132	chr12:33108132:T:C	rs61928820	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr12	33287705	33287706	chr12:33287706:T:C	rs1379541	T	C	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr12	33605932	33605933	chr12:33605933:T:A	rs11052778	T	A	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr12	33960445	33960446	chr12:33960446:A:G	rs10844753	A	G	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr12	34461591	34461592	chr12:34461592:C:T	rs78222468	C	T	.	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr12	37545555	37545556	chr12:37545556:C:T	rs7963742	C	T	.	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr12	38175716	38175717	chr12:38175717:G:A	rs6582507	G	A	a	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr12	38325269	38325270	chr12:38325270:G:A	rs11183330	G	A	g	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr12	39161872	39161873	chr12:39161873:A:G	rs11170907	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr12	39544385	39544386	chr12:39544386:A:G	rs12229370	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr12	39621129	39621130	chr12:39621130:C:T	rs111871190	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr12	40312728	40312729	chr12:40312729:G:A	rs7302503	G	A	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr12	40481548	40481549	chr12:40481549:A:C	rs2251431	A	C	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr12	40481587	40481588	chr12:40481588:C:A	rs2405078	C	A	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr12	40698124	40698125	chr12:40698125:T:G	chr12:40698125:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr12	41553121	41553122	chr12:41553122:A:G	rs11180999	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr12	41663656	41663657	chr12:41663657:G:A	rs287024	G	A	g	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr12	41863654	41863655	chr12:41863655:G:A	rs4297521	G	A	g	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr12	42187870	42187871	chr12:42187871:T:C	rs712119	T	C	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr12	42218374	42218375	chr12:42218375:G:A	rs11832197	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	6.703896382228609	CTCGTAAAT
chr12	42482667	42482668	chr12:42482668:G:A	rs543552053	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr12	42482680	42482681	chr12:42482681:A:C	rs74081715	A	C	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr12	42744909	42744910	chr12:42744910:A:C	chr12:42744910:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr12	43148784	43148785	chr12:43148785:G:A	rs1166887	G	A	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr12	44763293	44763294	chr12:44763294:C:T	rs4768570	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr12	44931305	44931306	chr12:44931306:C:A	rs385946	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	5.195200222700982	GTTGTAAAA
chr12	45216041	45216042	chr12:45216042:G:C	rs192039522	G	C	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr12	45216043	45216044	chr12:45216044:G:A	rs896879464	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr12	45409325	45409326	chr12:45409326:G:A	rs61925708	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr12	45418461	45418462	chr12:45418462:T:C	rs74081808	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr12	46388812	46388813	chr12:46388813:A:G	rs145135968	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr12	46402738	46402739	chr12:46402739:A:C	rs2131371	A	C	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr12	46410391	46410392	chr12:46410392:T:C	rs1472178	T	C	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr12	46744376	46744377	chr12:46744377:G:T	rs4768752	G	T	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr12	46744397	46744398	chr12:46744398:G:A	rs4768753	G	A	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr12	46903477	46903478	chr12:46903478:G:C	rs11183655	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr12	47183776	47183777	chr12:47183777:A:C	rs9888310	A	C	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr12	47183809	47183810	chr12:47183810:A:G	rs9888311	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr12	47191331	47191332	chr12:47191332:G:A	rs10881072	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.802115875352188	6.408276024533114	GTCGTAAAG
chr12	48104543	48104544	chr12:48104544:G:A	rs11168408	G	A	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr12	48121621	48121622	chr12:48121622:T:A	rs10875745	T	A	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr12	48199920	48199921	chr12:48199921:A:G	rs558689420	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr12	50196052	50196053	chr12:50196053:G:A	rs7300549	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr12	50243103	50243104	chr12:50243104:C:T	rs79157395	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr12	50405294	50405295	chr12:50405295:A:C	chr12:50405295:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr12	50405323	50405324	chr12:50405324:G:T	rs7314198	G	T	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr12	50659252	50659253	chr12:50659253:G:A	rs1231379661	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr12	51373402	51373403	chr12:51373403:G:A	rs12815890	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr12	51687180	51687181	chr12:51687181:C:T	rs4761829	C	T	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	51977556	51977557	chr12:51977557:T:A	rs11169971	T	A	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr12	52123436	52123437	chr12:52123437:T:C	rs78788247	T	C	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr12	52124801	52124802	chr12:52124802:G:A	rs188955806	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr12	52124816	52124817	chr12:52124817:G:A	rs143640246	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr12	52434418	52434419	chr12:52434419:C:T	rs759732820	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr12	52674705	52674706	chr12:52674706:T:A	rs584843	T	A	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr12	52964567	52964568	chr12:52964568:A:G	rs6580923	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr12	52999591	52999592	chr12:52999592:A:G	rs566778185	A	G	a	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr12	53004380	53004381	chr12:53004381:A:C	rs115453816	A	C	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr12	53324174	53324175	chr12:53324175:C:G	rs117533176	C	G	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr12	53533104	53533105	chr12:53533105:G:A	rs12422400	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr12	53727048	53727049	chr12:53727049:C:T	rs567217823	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr12	54173478	54173479	chr12:54173479:G:C	rs115872502	G	C	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr12	54359262	54359263	chr12:54359263:C:T	rs117362233	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr12	54448557	54448558	chr12:54448558:C:T	rs1309192698	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr12	56687116	56687117	chr12:56687117:T:C	rs1401418767	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.69304884965439	5.530474984743409	ATCGTAAAA
chr12	57459010	57459011	chr12:57459011:G:T	chr12:57459011:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr12	57898923	57898924	chr12:57898924:G:A	rs1962047	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr12	58811670	58811671	chr12:58811671:A:G	chr12:58811671:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.698915159352956	1.0833721989091325	CCCGTAAAA
chr12	59185586	59185587	chr12:59185587:A:G	rs10877233	A	G	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr12	59393684	59393685	chr12:59393685:G:C	rs9805011	G	C	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr12	60349397	60349398	chr12:60349398:C:T	rs1504464	C	T	A	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr12	60358634	60358635	chr12:60358635:C:T	rs6581317	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr12	62472760	62472761	chr12:62472761:A:G	rs186289020	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr12	62714618	62714619	chr12:62714619:G:A	rs12313191	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	62731293	62731294	chr12:62731294:A:C	chr12:62731294:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr12	62731296	62731297	chr12:62731297:G:C	rs73127939	G	C	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr12	62786926	62786927	chr12:62786927:T:C	rs595455	T	C	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.911344677288588	9.305184528107661	GTTGTAAAA
chr12	63104078	63104079	chr12:63104079:A:C	rs149927085	A	C	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr12	64612026	64612027	chr12:64612027:G:A	rs115748619	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr12	64682717	64682718	chr12:64682718:G:T	rs2682728	G	T	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr12	65431065	65431066	chr12:65431066:A:G	rs1389799	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr12	65565299	65565300	chr12:65565300:C:T	rs10748020	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr12	65887142	65887143	chr12:65887143:A:G	rs77677211	A	G	.	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr12	66159219	66159220	chr12:66159220:T:C	rs59112451	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr12	66641498	66641499	chr12:66641499:C:G	rs11176357	C	G	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr12	67053249	67053250	chr12:67053250:T:C	rs918131902	T	C	t	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr12	67436491	67436492	chr12:67436492:A:C	rs11176735	A	C	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr12	67581678	67581679	chr12:67581679:A:G	rs12309997	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr12	67650476	67650477	chr12:67650477:T:G	rs564015249	T	G	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr12	67939439	67939440	chr12:67939440:C:T	rs10878699	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr12	68591846	68591847	chr12:68591847:T:C	rs73136333	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr12	68591850	68591851	chr12:68591851:C:T	rs115112731	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr12	68591868	68591869	chr12:68591869:C:T	rs11613147	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	68761068	68761069	chr12:68761069:G:A	rs147281597	G	A	C	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr12	68908770	68908771	chr12:68908771:G:A	rs74099468	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr12	68939621	68939622	chr12:68939622:G:T	rs17813197	G	T	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr12	69644509	69644510	chr12:69644510:G:A	rs7309007	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr12	69947333	69947334	chr12:69947334:A:G	rs2068155	A	G	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr12	70078558	70078559	chr12:70078559:T:C	rs3098304	T	C	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr12	70798500	70798501	chr12:70798501:C:T	rs12827660	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr12	71219234	71219235	chr12:71219235:T:A	rs34957091	T	A	T	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr12	71788124	71788125	chr12:71788125:G:A	rs328744	G	A	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr12	72784532	72784533	chr12:72784533:G:A	rs952273932	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr12	74945509	74945510	chr12:74945510:A:G	rs1526821	A	G	G	Hoxd9.mouse_homeodomain_3	6	1	+	7.994948769610968	4.016968795292732	CTCATAAAA
chr12	75142807	75142808	chr12:75142808:T:C	rs721750	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr12	75560310	75560311	chr12:75560311:G:C	rs564737815	G	C	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr12	75562229	75562230	chr12:75562230:A:C	rs1679383	A	C	C	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.77757273876414	CTCATAAAA
chr12	75878580	75878581	chr12:75878581:C:T	rs577777243	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr12	76762655	76762656	chr12:76762656:C:G	rs117667072	C	G	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr12	76762656	76762657	chr12:76762657:C:T	rs143562228	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr12	77006134	77006135	chr12:77006135:T:C	rs17759214	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr12	77049908	77049909	chr12:77049909:T:C	rs10862978	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.8073383678986845	3.8293583935804496	CTCGTTAAA
chr12	77745674	77745675	chr12:77745675:G:T	rs10859303	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr12	78121102	78121103	chr12:78121103:G:A	rs113377574	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr12	78171282	78171283	chr12:78171283:G:A	rs147917676	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr12	79933093	79933094	chr12:79933094:C:A	rs377755943	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	6.163945085190828	CTCGTAAAA
chr12	79933094	79933095	chr12:79933095:G:C	rs370949918	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	2.319922046874276	CTCGTAAAA
chr12	80326273	80326274	chr12:80326274:C:T	rs1451097	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr12	80893532	80893533	chr12:80893533:A:G	rs2037406	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr12	82971619	82971620	chr12:82971620:T:C	rs143470975	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr12	82972744	82972745	chr12:82972745:G:A	rs142706697	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	6.703896382228609	CTCGTAAAT
chr12	83695392	83695393	chr12:83695393:T:G	rs1908956	T	G	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr12	83732533	83732534	chr12:83732534:T:A	rs11531138	T	A	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr12	84630534	84630535	chr12:84630535:C:T	rs17784454	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr12	85591998	85591999	chr12:85591999:A:G	rs2199517	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.589037152396075	0.7205945907994784	CTCGTAAAT
chr12	86015716	86015717	chr12:86015717:C:T	rs7307686	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr12	86118203	86118204	chr12:86118204:A:T	rs2471571	A	T	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr12	86118222	86118223	chr12:86118223:A:G	rs61931159	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr12	88111300	88111301	chr12:88111301:T:C	rs2468255	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr12	89157490	89157491	chr12:89157491:C:T	rs111407631	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr12	89689131	89689132	chr12:89689132:C:A	rs2037375	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	5.195200222700982	GTTGTAAAA
chr12	90112465	90112466	chr12:90112466:G:A	rs73212035	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr12	91049813	91049814	chr12:91049814:T:C	rs118103358	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr12	91058163	91058164	chr12:91058164:T:G	rs1990548	T	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr12	91414318	91414319	chr12:91414319:C:T	rs73204307	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr12	92085365	92085366	chr12:92085366:G:A	rs549045693	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr12	92261660	92261661	chr12:92261661:T:C	rs1545152	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr12	92439347	92439348	chr12:92439348:G:A	rs168089	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr12	92540189	92540190	chr12:92540190:T:C	rs61936625	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	6.73017029686311	GTTGTAAAA
chr12	92546286	92546287	chr12:92546287:G:A	rs11106620	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr12	92605780	92605781	chr12:92605781:C:A	rs79761610	C	A	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr12	92605781	92605782	chr12:92605782:G:A	rs6538337	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr12	93204173	93204174	chr12:93204174:C:T	rs58516695	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr12	93554044	93554045	chr12:93554045:A:C	rs11107097	A	C	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr12	93574146	93574147	chr12:93574147:C:A	rs544684008	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	3.0900528109233516	GTTGTAAAA
chr12	93842008	93842009	chr12:93842009:C:T	rs10859597	C	T	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	94100123	94100124	chr12:94100124:C:G	rs28366831	C	G	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr12	94589798	94589799	chr12:94589799:C:T	rs78138827	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr12	95554589	95554590	chr12:95554590:C:T	rs11609603	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr12	95563053	95563054	chr12:95563054:C:T	rs11108115	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr12	96134282	96134283	chr12:96134283:C:T	rs10777773	C	T	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr12	96298003	96298004	chr12:96298004:A:C	rs7314551	A	C	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr12	96644713	96644714	chr12:96644714:G:T	rs12322815	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr12	97323390	97323391	chr12:97323391:C:T	rs76146845	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr12	98127699	98127700	chr12:98127700:C:A	rs1838376	C	A	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr12	98500829	98500830	chr12:98500830:G:A	rs569099655	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr12	99005734	99005735	chr12:99005735:C:A	rs11109699	C	A	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr12	99489753	99489754	chr12:99489754:G:C	rs2175523	G	C	G	Hoxd9.mouse_homeodomain_3	8	1	-	6.906634116835357	6.620941494926711	GCCGTAAAC
chr12	100017328	100017329	chr12:100017329:C:T	rs145595833	C	T	c	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr12	100895318	100895319	chr12:100895319:A:G	rs74348501	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr12	101866695	101866696	chr12:101866696:A:T	rs34936385	A	T	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	103783994	103783995	chr12:103783995:C:T	rs116516318	C	T	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr12	103859320	103859321	chr12:103859321:T:C	rs534719663	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.880089539778433	7.37702088702296	CTCGTAAAA
chr12	103881301	103881302	chr12:103881302:G:A	rs2583241	G	A	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr12	103881859	103881860	chr12:103881860:A:C	rs11111822	A	C	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	5.724807546727723	CTCATAAAA
chr12	103929264	103929265	chr12:103929265:T:C	rs114854657	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr12	103975508	103975509	chr12:103975509:T:C	rs4135082	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr12	104049859	104049860	chr12:104049860:A:G	chr12:104049860:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr12	104586613	104586614	chr12:104586614:C:T	rs1650136	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr12	104591761	104591762	chr12:104591762:G:T	rs11112119	G	T	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr12	104596690	104596691	chr12:104596691:T:G	rs1529423	T	G	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr12	104629230	104629231	chr12:104629231:T:G	rs79941977	T	G	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr12	105067841	105067842	chr12:105067842:T:C	rs10459204	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr12	105355784	105355785	chr12:105355785:C:T	rs17247866	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr12	105445706	105445707	chr12:105445707:A:G	rs147688405	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr12	105768390	105768391	chr12:105768391:T:A	rs4609683	T	A	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr12	105812739	105812740	chr12:105812740:T:C	rs10507200	T	C	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr12	105983441	105983442	chr12:105983442:C:T	rs77008414	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	106030753	106030754	chr12:106030754:G:A	rs76355102	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr12	106091123	106091124	chr12:106091124:A:G	rs146895205	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr12	106123897	106123898	chr12:106123898:T:C	rs1215606	T	C	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr12	106155115	106155116	chr12:106155116:G:A	rs73195614	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr12	106592903	106592904	chr12:106592904:C:T	rs12228930	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr12	107208371	107208372	chr12:107208372:C:T	rs11113218	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr12	107645902	107645903	chr12:107645903:G:A	rs189323587	G	A	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr12	107761619	107761620	chr12:107761620:G:A	rs144108432	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.014132140725302	7.401996462272032	GTCGTAAAT
chr12	108131734	108131735	chr12:108131735:C:T	rs183728328	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr12	108131755	108131756	chr12:108131756:C:T	rs11113755	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr12	108328650	108328651	chr12:108328651:G:T	rs7297342	G	T	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr12	108349312	108349313	chr12:108349313:C:T	rs17040435	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr12	108882194	108882195	chr12:108882195:G:C	rs73410949	G	C	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr12	108909018	108909019	chr12:108909019:A:G	rs56065733	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr12	109102295	109102296	chr12:109102296:C:G	rs55740597	C	G	G	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	0.616099126352066	GGCGTAAAA
chr12	109574412	109574413	chr12:109574413:A:G	chr12:109574413:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr12	109716566	109716567	chr12:109716567:C:T	rs1374689191	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr12	109937486	109937487	chr12:109937487:G:A	chr12:109937487:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	110608503	110608504	chr12:110608504:G:A	rs146795916	G	A	g	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr12	111588714	111588715	chr12:111588715:G:C	rs187345143	G	C	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr12	114280841	114280842	chr12:114280842:A:G	rs7314743	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr12	114371432	114371433	chr12:114371433:G:A	rs780227190	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr12	114395809	114395810	chr12:114395810:A:G	rs1895605	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr12	114445640	114445641	chr12:114445641:A:G	rs2911553	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.802115875352188	6.620941494926711	GTCGTAAAG
chr12	114661491	114661492	chr12:114661492:T:C	rs77199614	T	C	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr12	114793313	114793314	chr12:114793314:G:A	rs4767267	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr12	114947918	114947919	chr12:114947919:T:A	rs12370544	T	A	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr12	115756944	115756945	chr12:115756945:G:A	rs766113145	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.014132140725302	6.620292289906229	GTCGTAAAT
chr12	115979918	115979919	chr12:115979919:T:G	rs61936941	T	G	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr12	116236795	116236796	chr12:116236796:C:G	rs61935858	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr12	118524703	118524704	chr12:118524704:A:G	rs6490191	A	G	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	120787722	120787723	chr12:120787723:C:T	rs3901854	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr12	120913118	120913119	chr12:120913119:T:C	rs66947454	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr12	121091423	121091424	chr12:121091424:A:G	rs71454676	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr12	121143857	121143858	chr12:121143858:A:T	rs12830584	A	T	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr12	121143877	121143878	chr12:121143878:T:C	rs12832396	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr12	121243732	121243733	chr12:121243733:C:T	rs1140886	C	T	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr12	121466396	121466397	chr12:121466397:T:C	chr12:121466397:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	6.906634116835357	3.7440602519243757	GCCGTAAAC
chr12	121490646	121490647	chr12:121490647:T:G	rs78955829	T	G	T	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr12	121574337	121574338	chr12:121574338:C:T	rs28506195	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr12	121610360	121610361	chr12:121610361:C:T	rs114332485	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr12	121767115	121767116	chr12:121767116:A:G	rs73411782	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr12	121812296	121812297	chr12:121812297:T:G	chr12:121812297:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.232433356227913	6.103515447376475	GTCGTTAAA
chr12	121942367	121942368	chr12:121942368:A:G	rs2247139	A	G	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr12	122739253	122739254	chr12:122739254:C:T	rs940896607	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr12	122854416	122854417	chr12:122854417:A:G	rs936083	A	G	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr12	123294941	123294942	chr12:123294942:G:A	rs3088303	G	A	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr12	123391195	123391196	chr12:123391196:T:C	rs76909472	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr12	123931506	123931507	chr12:123931507:T:C	rs61953572	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr12	124110780	124110781	chr12:124110781:C:T	rs12824096	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr12	124218553	124218554	chr12:124218554:C:T	rs113158354	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr12	124231956	124231957	chr12:124231957:A:G	rs12312623	A	G	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr12	124510148	124510149	chr12:124510149:C:T	rs79646437	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr12	124719229	124719230	chr12:124719230:C:T	rs58908512	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr12	125999800	125999801	chr12:125999801:C:T	rs16919908	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr12	126289070	126289071	chr12:126289071:G:A	rs16920460	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr12	126529946	126529947	chr12:126529947:T:C	rs76362814	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr12	126652314	126652315	chr12:126652315:G:C	rs117765674	G	C	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr12	126858163	126858164	chr12:126858164:G:A	rs111411854	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr12	127273655	127273656	chr12:127273656:C:T	rs115397313	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr12	127273661	127273662	chr12:127273662:T:C	rs35702914	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr12	127483643	127483644	chr12:127483644:G:A	rs12146780	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr12	127656537	127656538	chr12:127656538:C:G	rs1388149	C	G	G	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	0.616099126352066	GGCGTAAAA
chr12	127912692	127912693	chr12:127912693:A:G	rs2701825	A	G	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr12	128245525	128245526	chr12:128245526:C:T	rs4533103	C	T	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr12	129258061	129258062	chr12:129258062:G:A	rs78449368	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr12	129719940	129719941	chr12:129719941:A:G	rs75758999	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr12	130049896	130049897	chr12:130049897:G:A	rs76907132	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr12	130079478	130079479	chr12:130079479:A:G	rs11060682	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr12	130920838	130920839	chr12:130920839:G:A	rs76379240	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr12	131009483	131009484	chr12:131009484:A:G	rs1151357	A	G	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr12	131227189	131227190	chr12:131227190:T:C	rs150238727	T	C	t	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr12	131229016	131229017	chr12:131229017:C:T	rs138445711	C	T	-	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr12	131365982	131365983	chr12:131365983:G:A	rs141848340	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr12	131978176	131978177	chr12:131978177:C:A	rs58590612	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	6.163945085190828	CTCGTAAAA
chr12	132663257	132663258	chr12:132663258:G:A	rs5744839	G	A	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr12	132683701	132683702	chr12:132683702:T:A	rs9630293	T	A	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr12	132939783	132939784	chr12:132939784:T:G	rs1298811	T	G	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr13	19084344	19084345	chr13:19084345:A:C	rs183399813	A	C	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.698915159352956	6.481539128506128	CCCGTAAAA
chr13	20134746	20134747	chr13:20134747:G:A	rs6490517	G	A	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr13	20338042	20338043	chr13:20338043:C:G	rs9579842	C	G	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr13	21018979	21018980	chr13:21018980:C:G	rs632084	C	G	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr13	21061872	21061873	chr13:21061873:G:T	rs73445541	G	T	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr13	21334384	21334385	chr13:21334385:G:T	rs17065298	G	T	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr13	21609186	21609187	chr13:21609187:A:G	rs17068873	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr13	21744302	21744303	chr13:21744303:A:G	rs629445	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr13	21979340	21979341	chr13:21979341:C:A	rs868273290	C	A	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr13	22227043	22227044	chr13:22227044:A:G	rs9506808	A	G	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr13	22801047	22801048	chr13:22801048:T:G	rs10467580	T	G	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr13	23507115	23507116	chr13:23507116:C:T	rs7332817	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr13	23623202	23623203	chr13:23623203:A:G	rs146077085	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr13	23671483	23671484	chr13:23671484:G:A	rs117445278	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr13	23956120	23956121	chr13:23956121:A:G	rs9551029	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr13	24170686	24170687	chr13:24170687:G:A	rs9580892	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr13	24560041	24560042	chr13:24560042:A:G	rs112128816	A	G	N	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr13	24689913	24689914	chr13:24689914:G:A	rs1867769	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr13	25544917	25544918	chr13:25544918:T:G	rs76735245	T	G	-	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr13	27542421	27542422	chr13:27542422:T:A	rs2057521	T	A	A	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr13	27599524	27599525	chr13:27599525:C:A	rs9512760	C	A	A	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	5.93726177251258	CCCGTAAAA
chr13	27696930	27696931	chr13:27696931:C:T	rs34413139	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	7.911344677288588	GTCGTAAAA
chr13	27863187	27863188	chr13:27863188:C:T	rs7991712	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr13	28519681	28519682	chr13:28519682:A:G	rs9634349	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr13	28555214	28555215	chr13:28555215:G:A	rs61950362	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr13	28823304	28823305	chr13:28823305:T:A	rs9550401	T	A	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr13	29384716	29384717	chr13:29384717:G:A	rs4769734	G	A	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr13	29512124	29512125	chr13:29512125:C:T	rs76803270	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr13	30164215	30164216	chr13:30164216:G:C	rs1330103	G	C	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr13	30453914	30453915	chr13:30453915:A:C	rs67455627	A	C	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	7.202667727093368	GTCATAAAA
chr13	30615649	30615650	chr13:30615650:T:G	rs3759513	T	G	T	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr13	30674631	30674632	chr13:30674632:C:T	rs76383538	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr13	30833145	30833146	chr13:30833146:G:T	rs113465151	G	T	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	4.946569054344	CTCGTAAAC
chr13	31067427	31067428	chr13:31067428:T:C	rs7350700	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr13	31920923	31920924	chr13:31920924:C:T	rs203432	C	T	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr13	32165904	32165905	chr13:32165905:T:C	rs703217	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr13	32212051	32212052	chr13:32212052:G:C	rs117482996	G	C	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr13	32746906	32746907	chr13:32746907:A:G	rs12877579	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr13	32932240	32932241	chr13:32932241:A:G	rs9591423	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr13	33059096	33059097	chr13:33059097:A:G	rs1053837986	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr13	33195012	33195013	chr13:33195013:G:A	rs75542752	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr13	33195021	33195022	chr13:33195022:C:T	rs539946806	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr13	33323499	33323500	chr13:33323500:C:T	rs3895323	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr13	33445793	33445794	chr13:33445794:C:T	rs73465393	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr13	33686829	33686830	chr13:33686830:G:T	rs78503705	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr13	34503482	34503483	chr13:34503483:G:A	rs73181268	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr13	34792962	34792963	chr13:34792963:C:T	rs744826	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr13	35697493	35697494	chr13:35697494:G:A	rs1327965	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr13	35744243	35744244	chr13:35744244:A:G	rs9565522	A	G	g	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr13	36130281	36130282	chr13:36130282:G:A	rs74044531	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr13	36319904	36319905	chr13:36319905:C:T	rs66496016	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr13	37173013	37173014	chr13:37173014:A:T	rs883514	A	T	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr13	37640654	37640655	chr13:37640655:C:T	rs2031272	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr13	38941504	38941505	chr13:38941505:A:G	rs6563652	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr13	38990923	38990924	chr13:38990924:C:A	rs9576674	C	A	c	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr13	39036426	39036427	chr13:39036427:G:A	rs116427889	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr13	39130634	39130635	chr13:39130635:G:A	rs75439114	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr13	39130642	39130643	chr13:39130643:C:G	rs10870730	C	G	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr13	40094270	40094271	chr13:40094271:C:T	rs915509	C	T	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr13	40439404	40439405	chr13:40439405:C:T	rs187893858	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr13	40478486	40478487	chr13:40478487:A:G	rs74955702	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr13	40496517	40496518	chr13:40496518:T:C	rs546514192	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr13	40595823	40595824	chr13:40595824:T:C	rs542084029	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	1.8045007974963716	GTCATAAAA
chr13	40932747	40932748	chr13:40932748:A:G	rs1056824	A	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr13	41060235	41060236	chr13:41060236:C:T	rs142264049	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.589037152396075	3.1928402743600652	CTCGTAAAT
chr13	41547451	41547452	chr13:41547452:C:T	rs1019277496	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr13	41547456	41547457	chr13:41547457:G:A	rs149329973	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr13	42383187	42383188	chr13:42383188:G:A	rs35406824	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr13	42753587	42753588	chr13:42753588:A:G	rs12431076	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr13	43025274	43025275	chr13:43025275:C:T	rs7322198	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	7.911344677288588	GTCGTAAAA
chr13	43442604	43442605	chr13:43442605:C:A	rs1570449	C	A	c	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr13	44258997	44258998	chr13:44258998:T:C	rs4941489	T	C	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr13	44519864	44519865	chr13:44519865:A:G	rs7999606	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr13	44519875	44519876	chr13:44519876:T:C	rs9533889	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr13	45231624	45231625	chr13:45231625:A:G	rs1980759	A	G	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr13	45681570	45681571	chr13:45681571:G:A	rs74073412	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr13	45954762	45954763	chr13:45954763:A:G	rs145649799	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr13	45980713	45980714	chr13:45980714:A:G	rs1571052	A	G	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr13	45980718	45980719	chr13:45980719:G:A	rs1571053	G	A	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr13	46157599	46157600	chr13:46157600:T:C	rs7995734	T	C	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr13	46600774	46600775	chr13:46600775:A:G	rs1886965	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr13	46927203	46927204	chr13:46927204:A:C	rs79939977	A	C	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr13	47334240	47334241	chr13:47334241:C:G	rs7983572	C	G	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	4.221738893972249	CTCGTAAAG
chr13	47415710	47415711	chr13:47415711:C:T	rs997708	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr13	48544566	48544567	chr13:48544567:A:C	rs7992129	A	C	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr13	49828040	49828041	chr13:49828041:C:T	rs7328465	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr13	50016734	50016735	chr13:50016735:A:C	rs2066550	A	C	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr13	50133768	50133769	chr13:50133769:C:T	rs181278351	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr13	51158911	51158912	chr13:51158912:A:T	rs11148211	A	T	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr13	51180941	51180942	chr13:51180942:A:G	rs9535609	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr13	51807753	51807754	chr13:51807754:C:T	rs78446593	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr13	51834058	51834059	chr13:51834059:C:A	rs537744956	C	A	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr13	51980997	51980998	chr13:51980998:A:T	rs9316563	A	T	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr13	52236136	52236137	chr13:52236137:G:A	rs114041070	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr13	52570377	52570378	chr13:52570378:G:A	rs112093517	G	A	-	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr13	52694992	52694993	chr13:52694993:G:A	rs7992165	G	A	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr13	52758216	52758217	chr13:52758217:T:C	rs9316585	T	C	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr13	53451790	53451791	chr13:53451791:G:A	rs118076942	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr13	53822466	53822467	chr13:53822467:C:T	rs1379828	C	T	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr13	54633140	54633141	chr13:54633141:A:G	rs2447970	A	G	a	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr13	55419936	55419937	chr13:55419937:T:C	rs9527379	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr13	59015455	59015456	chr13:59015456:T:A	rs6420320	T	A	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr13	59683310	59683311	chr13:59683311:T:C	rs9563755	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	1.8045007974963716	GTCATAAAA
chr13	60018768	60018769	chr13:60018769:T:C	rs383465	T	C	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr13	60146981	60146982	chr13:60146982:T:C	rs9538575	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr13	60707054	60707055	chr13:60707055:C:T	rs10507655	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr13	61547001	61547002	chr13:61547002:A:G	rs2876807	A	G	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr13	61990031	61990032	chr13:61990032:T:C	rs73219269	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr13	63575205	63575206	chr13:63575206:A:G	rs1602447	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr13	64771075	64771076	chr13:64771076:A:C	rs9317443	A	C	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr13	66143608	66143609	chr13:66143609:G:T	rs61957693	G	T	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr13	66845000	66845001	chr13:66845001:C:T	rs1530301	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr13	67737359	67737360	chr13:67737360:G:A	rs77081189	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr13	69691129	69691130	chr13:69691130:G:A	rs9317833	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr13	72924808	72924809	chr13:72924809:G:A	rs2325482	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr13	73326467	73326468	chr13:73326468:G:A	rs9600114	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr13	73702993	73702994	chr13:73702994:T:C	rs148054893	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr13	74444600	74444601	chr13:74444601:T:C	rs1931959	T	C	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr13	74872010	74872011	chr13:74872011:T:C	rs12875786	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr13	76039571	76039572	chr13:76039572:G:A	rs73215686	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.983181036203886	CTCGTAAAG
chr13	76829989	76829990	chr13:76829990:G:A	rs9573948	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr13	76829992	76829993	chr13:76829993:T:C	rs9544378	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr13	76875607	76875608	chr13:76875608:C:T	rs61962725	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr13	77917915	77917916	chr13:77917916:T:G	rs12720164	T	G	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	4.829041988575794	CTCATAAAA
chr13	78631276	78631277	chr13:78631277:A:G	rs9574267	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr13	80245593	80245594	chr13:80245594:A:G	rs1146942	A	G	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr13	80585056	80585057	chr13:80585057:T:C	rs1857572	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr13	81286971	81286972	chr13:81286972:T:C	rs9593548	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr13	82480584	82480585	chr13:82480585:G:C	rs9575118	G	C	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr13	84377093	84377094	chr13:84377094:C:T	rs17369482	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr13	85632032	85632033	chr13:85632033:T:C	rs943920	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr13	86840101	86840102	chr13:86840102:C:T	rs9589419	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr13	86840146	86840147	chr13:86840147:G:A	rs141270004	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr13	87130293	87130294	chr13:87130294:T:C	rs55834633	T	C	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr13	88058361	88058362	chr13:88058362:A:G	rs9300906	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr13	88058369	88058370	chr13:88058370:C:T	rs116995048	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr13	88124264	88124265	chr13:88124265:T:C	rs2881382	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr13	89155473	89155474	chr13:89155474:C:G	rs7336781	C	G	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr13	89882348	89882349	chr13:89882349:A:G	rs9284261	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr13	90386249	90386250	chr13:90386250:A:C	rs9560619	A	C	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr13	90798399	90798400	chr13:90798400:G:A	rs9589006	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr13	90897988	90897989	chr13:90897989:T:A	rs17555246	T	A	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr13	91083237	91083238	chr13:91083238:T:A	rs16945136	T	A	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr13	91141845	91141846	chr13:91141846:G:A	rs9583887	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr13	91304780	91304781	chr13:91304781:A:G	rs7335045	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr13	92419126	92419127	chr13:92419127:A:C	rs4773682	A	C	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr13	92842446	92842447	chr13:92842447:C:T	rs1228855967	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	6.906634116835357	6.021493346667889	GCCGTAAAC
chr13	93481138	93481139	chr13:93481139:G:A	rs7981060	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr13	93982735	93982736	chr13:93982736:A:G	rs9301921	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr13	95244161	95244162	chr13:95244162:G:A	rs10508018	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.802115875352188	6.408276024533114	GTCGTAAAG
chr13	95273059	95273060	chr13:95273060:G:T	rs17268282	G	T	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr13	95466301	95466302	chr13:95466302:G:A	rs7999180	G	A	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr13	95472277	95472278	chr13:95472278:T:C	rs7988153	T	C	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr13	96426297	96426298	chr13:96426298:C:T	rs1886560	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr13	97021350	97021351	chr13:97021351:T:C	rs9516809	T	C	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr13	97183621	97183622	chr13:97183622:C:T	rs9556688	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.176266619256224	6.291125849088757	GGCGTAAAA
chr13	97435236	97435237	chr13:97435237:T:C	rs147785033	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr13	97798136	97798137	chr13:97798137:G:A	rs4473035	G	A	g	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr13	97880173	97880174	chr13:97880174:G:T	rs78665916	G	T	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr13	98084868	98084869	chr13:98084869:T:C	rs10508033	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr13	98088448	98088449	chr13:98088449:G:A	rs12871665	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr13	98144142	98144143	chr13:98144143:G:A	rs72653374	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr13	98233757	98233758	chr13:98233758:A:G	rs868941	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr13	98309991	98309992	chr13:98309992:G:A	rs645628	G	A	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr13	98309999	98310000	chr13:98310000:C:G	rs7329103	C	G	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr13	98445245	98445246	chr13:98445246:G:A	rs61492046	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr13	98445254	98445255	chr13:98445255:G:A	rs3752973	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	6.305075308533882	CCCGTAAAA
chr13	99135914	99135915	chr13:99135915:G:A	rs7320949	G	A	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	6.703896382228609	CTCGTAAAT
chr13	99340025	99340026	chr13:99340026:A:G	rs9557202	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr13	99727452	99727453	chr13:99727453:A:G	rs2298066	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr13	99864461	99864462	chr13:99864462:C:T	rs7333886	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr13	99968757	99968758	chr13:99968758:G:A	rs1050213322	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr13	99986268	99986269	chr13:99986269:G:T	rs145575235	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	7.807908079486923	CTCATAAAA
chr13	100160600	100160601	chr13:100160601:T:G	rs1556799	T	G	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr13	100636737	100636738	chr13:100636738:C:T	rs3803256	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr13	100873014	100873015	chr13:100873015:G:A	rs59401165	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr13	100893190	100893191	chr13:100893191:G:A	rs1570601	G	A	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr13	104002349	104002350	chr13:104002350:C:T	rs2791246	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr13	104058108	104058109	chr13:104058109:G:A	rs74682038	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr13	104592707	104592708	chr13:104592708:A:T	rs9519398	A	T	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr13	104758048	104758049	chr13:104758049:G:A	rs115573948	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr13	104943583	104943584	chr13:104943584:C:T	rs76466462	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr13	105475484	105475485	chr13:105475485:T:C	rs1557072	T	C	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr13	106103981	106103982	chr13:106103982:C:T	rs9558678	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr13	106183997	106183998	chr13:106183998:G:C	rs72652612	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr13	106493480	106493481	chr13:106493481:A:T	rs3742160	A	T	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr13	109072210	109072211	chr13:109072211:C:T	rs9555555	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr13	109297882	109297883	chr13:109297883:T:G	rs9521297	T	G	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.420043757940196	5.254136976905022	GTCATAAAA
chr13	109332130	109332131	chr13:109332131:A:T	rs900741190	A	T	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr13	110095121	110095122	chr13:110095122:T:C	rs74124137	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr13	110169176	110169177	chr13:110169177:G:C	rs75372280	G	C	G	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr13	110262839	110262840	chr13:110262840:G:A	rs627603	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	6.906634116835357	5.512794266016282	GCCGTAAAC
chr13	110347840	110347841	chr13:110347841:G:A	rs4771670	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr13	110347851	110347852	chr13:110347852:A:T	rs4773164	A	T	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr13	110412917	110412918	chr13:110412918:G:A	rs9515207	G	A	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr13	110480142	110480143	chr13:110480143:A:G	rs4773194	A	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr13	110568494	110568495	chr13:110568495:G:A	rs9521845	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.802115875352188	6.408276024533114	GTCGTAAAG
chr13	111059749	111059750	chr13:111059750:G:C	rs9559955	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.37702088702296	7.802115875352188	CTCGTAAAG
chr13	111240046	111240047	chr13:111240047:C:T	rs11619224	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr13	111427285	111427286	chr13:111427286:T:C	rs1163847	T	C	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr13	111948156	111948157	chr13:111948157:G:A	rs9549567	G	A	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr13	111958873	111958874	chr13:111958874:A:G	rs9577403	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr13	112222628	112222629	chr13:112222629:C:G	rs2118226	C	G	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr13	112240051	112240052	chr13:112240052:G:A	rs7324667	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr13	112531230	112531231	chr13:112531231:G:C	rs9550122	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	1.8598762650360374	GTCATAAAA
chr13	112695327	112695328	chr13:112695328:G:T	rs282583	G	T	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr13	112803514	112803515	chr13:112803515:C:T	rs60689741	C	T	c	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr13	112803518	112803519	chr13:112803519:G:A	rs77861357	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr13	112803543	112803544	chr13:112803544:A:G	rs148424411	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr13	113836120	113836121	chr13:113836121:C:T	rs140786691	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr13	113976061	113976062	chr13:113976062:C:T	rs28408720	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr13	114063935	114063936	chr13:114063936:G:A	rs112397489	G	A	.	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr13	114135702	114135703	chr13:114135703:G:C	rs12867733	G	C	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr13	114135712	114135713	chr13:114135713:C:T	rs2183246	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr13	114298947	114298948	chr13:114298948:G:A	rs3752107	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr13	114329509	114329510	chr13:114329510:T:C	rs76164500	T	C	t	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr14	18223890	18223891	chr14:18223891:C:T	rs374384267	C	T	.	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr14	20376858	20376859	chr14:20376859:A:G	rs1760906	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr14	20874076	20874077	chr14:20874077:A:G	rs72488260	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr14	20934634	20934635	chr14:20934635:C:T	rs28505682	C	T	-	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr14	21104346	21104347	chr14:21104347:C:A	rs74036601	C	A	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr14	21104360	21104361	chr14:21104361:G:T	rs527467364	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.087808497260832	6.326155110420458	GTCGTAAAC
chr14	21185781	21185782	chr14:21185782:G:A	rs28521294	G	A	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr14	21553985	21553986	chr14:21553986:C:T	rs17792748	C	T	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr14	21841145	21841146	chr14:21841146:C:T	rs34295307	C	T	t	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr14	21881312	21881313	chr14:21881313:A:G	rs994826	A	G	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr14	22160219	22160220	chr14:22160220:A:T	rs760010	A	T	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	7.128991370557837	GTCATAAAA
chr14	22206507	22206508	chr14:22206508:T:C	rs61972231	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr14	22255313	22255314	chr14:22255314:C:G	rs10151596	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	4.433755159345364	CTCGTAAAT
chr14	22255848	22255849	chr14:22255849:T:C	rs1569296	T	C	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr14	22387337	22387338	chr14:22387338:A:G	rs61974568	A	G	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr14	23096933	23096934	chr14:23096934:A:G	rs3759607	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr14	23245038	23245039	chr14:23245039:C:T	rs178778	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr14	23299954	23299955	chr14:23299955:C:T	rs7161630	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr14	23454858	23454859	chr14:23454859:A:T	rs7142266	A	T	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr14	23584223	23584224	chr14:23584224:G:A	rs12433433	G	A	g	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr14	23618769	23618770	chr14:23618770:T:C	rs75951922	T	C	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.911344677288588	9.305184528107661	GTTGTAAAA
chr14	23693971	23693972	chr14:23693972:G:C	rs12894440	G	C	g	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr14	24142125	24142126	chr14:24142126:G:C	rs8006173	G	C	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr14	24259584	24259585	chr14:24259585:C:T	rs41293792	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr14	24362198	24362199	chr14:24362199:G:A	rs149981696	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr14	27216797	27216798	chr14:27216798:T:A	rs113806217	T	A	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.37702088702296	6.304269715143211	CTCGTAAAG
chr14	28078933	28078934	chr14:28078934:A:G	rs12885788	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr14	28121596	28121597	chr14:28121597:A:G	rs79563596	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.911344677288588	4.748770812377607	GTTGTAAAA
chr14	28383149	28383150	chr14:28383150:C:T	rs116658054	C	T	c	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr14	28599417	28599418	chr14:28599418:C:T	rs7153439	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr14	29486323	29486324	chr14:29486324:T:A	rs4981702	T	A	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr14	29857729	29857730	chr14:29857730:C:G	rs1958991	C	G	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr14	30972134	30972135	chr14:30972135:C:T	rs148256550	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr14	31053261	31053262	chr14:31053262:C:A	rs146397100	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	3.0900528109233516	GTTGTAAAA
chr14	31219485	31219486	chr14:31219486:T:C	rs7155324	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr14	32450168	32450169	chr14:32450169:A:G	rs1957020	A	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr14	32707359	32707360	chr14:32707360:C:T	rs1295912	C	T	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr14	33028031	33028032	chr14:33028032:A:G	rs17099941	A	G	A	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr14	33135260	33135261	chr14:33135261:A:G	rs10132545	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr14	33580643	33580644	chr14:33580644:C:T	rs10137285	C	T	C	Hoxd9.mouse_homeodomain_3	8	1	-	7.802115875352188	9.305184528107661	GTCGTAAAG
chr14	33686476	33686477	chr14:33686477:A:G	rs12587926	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr14	33886990	33886991	chr14:33886991:A:G	rs1042592682	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr14	33935520	33935521	chr14:33935521:A:C	rs1680696	A	C	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr14	34107560	34107561	chr14:34107561:T:C	rs1897226	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr14	34247615	34247616	chr14:34247616:T:A	rs35294788	T	A	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr14	34247617	34247618	chr14:34247618:G:A	rs34845509	G	A	g	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr14	34372763	34372764	chr14:34372764:C:T	rs74046040	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr14	34527605	34527606	chr14:34527606:A:G	rs28769357	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr14	35121463	35121464	chr14:35121464:G:A	rs536056510	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr14	36317819	36317820	chr14:36317820:G:T	rs8010646	G	T	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr14	36652114	36652115	chr14:36652115:T:C	rs11156923	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr14	38292254	38292255	chr14:38292255:T:C	rs1168422	T	C	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr14	38549559	38549560	chr14:38549560:G:A	rs8015028	G	A	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr14	39169724	39169725	chr14:39169725:T:C	rs10483541	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr14	39169732	39169733	chr14:39169733:A:G	rs944203640	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr14	39291893	39291894	chr14:39291894:A:G	rs117225577	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr14	41205699	41205700	chr14:41205700:A:C	rs1782170	A	C	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr14	41947685	41947686	chr14:41947686:G:A	rs7359052	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr14	41947704	41947705	chr14:41947705:A:G	rs7147055	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr14	42010693	42010694	chr14:42010694:C:A	rs28432924	C	A	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr14	42017778	42017779	chr14:42017779:G:A	rs1471852	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr14	42851916	42851917	chr14:42851917:C:G	rs1584548	C	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr14	44297612	44297613	chr14:44297613:C:A	rs117991741	C	A	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr14	44352311	44352312	chr14:44352312:T:A	rs2022618	T	A	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr14	44561568	44561569	chr14:44561569:G:A	rs78206963	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr14	45713496	45713497	chr14:45713497:G:A	rs61525041	G	A	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr14	45713856	45713857	chr14:45713857:A:G	rs112893878	A	G	a	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr14	45717139	45717140	chr14:45717140:G:A	rs1266262	G	A	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr14	46405404	46405405	chr14:46405405:C:G	rs139274242	C	G	.	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr14	46413068	46413069	chr14:46413069:G:A	rs8019899	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr14	47054091	47054092	chr14:47054092:G:C	rs1954246	G	C	g	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr14	47054103	47054104	chr14:47054104:C:T	rs61992839	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr14	47214051	47214052	chr14:47214052:A:G	rs1952205	A	G	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr14	49641943	49641944	chr14:49641944:T:C	rs41345247	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr14	50936092	50936093	chr14:50936093:C:T	rs572862994	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr14	51082446	51082447	chr14:51082447:G:A	rs58066729	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr14	51224625	51224626	chr14:51224626:T:C	rs4315279	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr14	51394616	51394617	chr14:51394617:A:G	rs146747506	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr14	51638508	51638509	chr14:51638509:T:C	rs2357114	T	C	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr14	51774333	51774334	chr14:51774334:G:A	rs115208781	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr14	51774344	51774345	chr14:51774345:G:C	rs61970687	G	C	g	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr14	51774349	51774350	chr14:51774350:G:A	rs12897693	G	A	g	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr14	52545828	52545829	chr14:52545829:C:T	rs17125551	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr14	52878659	52878660	chr14:52878660:G:A	rs2357947	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr14	53248127	53248128	chr14:53248128:A:G	rs2000313	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr14	53393196	53393197	chr14:53393197:G:A	rs192793112	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr14	53463670	53463671	chr14:53463671:T:C	rs12894899	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr14	53635052	53635053	chr14:53635053:T:G	rs182273151	T	G	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr14	53924923	53924924	chr14:53924924:C:T	rs1957856	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr14	54003061	54003062	chr14:54003062:G:A	rs4243597	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr14	54026944	54026945	chr14:54026945:T:A	rs144548873	T	A	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr14	54177966	54177967	chr14:54177967:C:T	rs115538693	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	3.5987518915749583	CTCATAAAA
chr14	54444134	54444135	chr14:54444135:A:G	rs115226786	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr14	54695509	54695510	chr14:54695510:T:C	rs74601635	T	C	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.420043757940196	9.305184528107661	GTCATAAAA
chr14	55836025	55836026	chr14:55836026:C:T	rs34096981	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr14	55935559	55935560	chr14:55935560:C:A	rs8020688	C	A	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr14	55940219	55940220	chr14:55940220:C:T	rs75408556	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr14	56487790	56487791	chr14:56487791:T:G	rs74624686	T	G	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr14	57390555	57390556	chr14:57390556:C:T	rs1052519140	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr14	57833454	57833455	chr14:57833455:T:C	rs76126356	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr14	58639036	58639037	chr14:58639037:T:A	rs1482596751	T	A	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr14	58753077	58753078	chr14:58753078:C:T	rs2651252	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr14	58753082	58753083	chr14:58753083:A:T	rs11627218	A	T	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr14	58753095	58753096	chr14:58753096:T:G	rs117732861	T	G	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr14	58978017	58978018	chr14:58978018:G:C	rs76100230	G	C	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr14	59090889	59090890	chr14:59090890:G:T	rs34089578	G	T	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr14	59281244	59281245	chr14:59281245:G:A	rs7155203	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr14	59507777	59507778	chr14:59507778:A:G	rs8011309	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.911344677288588	4.748770812377607	GTTGTAAAA
chr14	59510939	59510940	chr14:59510940:T:A	rs4901933	T	A	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr14	60327769	60327770	chr14:60327770:T:A	rs74060153	T	A	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr14	60486205	60486206	chr14:60486206:G:T	rs191590876	G	T	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr14	60863774	60863775	chr14:60863775:G:A	rs561651413	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr14	61130827	61130828	chr14:61130828:C:T	rs955597841	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr14	61130845	61130846	chr14:61130846:C:T	rs559180719	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr14	61481283	61481284	chr14:61481284:T:C	rs8008798	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	7.802115875352188	6.620941494926711	GTCGTAAAG
chr14	61517224	61517225	chr14:61517225:A:G	rs3751289	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr14	61517236	61517237	chr14:61517237:C:T	rs3751290	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr14	62696605	62696606	chr14:62696606:T:A	rs963799	T	A	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr14	63205252	63205253	chr14:63205253:G:T	rs3742628	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	4.9827707047653504	CCCGTAAAA
chr14	63205265	63205266	chr14:63205266:C:T	rs3742627	C	T	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr14	64949024	64949025	chr14:64949025:C:T	rs57319601	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr14	65986120	65986121	chr14:65986121:G:T	rs151199004	G	T	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr14	66152864	66152865	chr14:66152865:C:T	rs76852729	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr14	66746742	66746743	chr14:66746743:A:G	rs10148162	A	G	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr14	67232198	67232199	chr14:67232199:A:G	rs10152002	A	G	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr14	68099993	68099994	chr14:68099994:A:G	rs117544253	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr14	68521263	68521264	chr14:68521264:A:G	rs116010732	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr14	68639390	68639391	chr14:68639391:C:T	rs4643253	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr14	68639403	68639404	chr14:68639404:G:C	rs4516148	G	C	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr14	68722776	68722777	chr14:68722777:C:T	rs17106195	C	T	c	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr14	68722794	68722795	chr14:68722795:C:T	rs61387441	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr14	68857701	68857702	chr14:68857702:C:T	rs28583550	C	T	c	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr14	68857728	68857729	chr14:68857729:A:C	rs372896	A	C	N	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr14	69658095	69658096	chr14:69658096:C:T	rs58053579	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr14	71135919	71135920	chr14:71135920:C:T	rs34007279	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr14	71233103	71233104	chr14:71233104:G:C	rs2158533	G	C	C	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.994948769610968	GTCATAAAA
chr14	71583444	71583445	chr14:71583445:C:T	rs8006300	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr14	72594148	72594149	chr14:72594149:T:C	rs714149	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr14	72903189	72903190	chr14:72903190:G:A	rs80189309	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.124010147682185	7.511874469228912	GCCGTAAAA
chr14	74495571	74495572	chr14:74495572:T:C	rs11159086	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr14	75255530	75255531	chr14:75255531:C:T	rs7142709	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr14	75318470	75318471	chr14:75318471:T:C	rs79975541	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr14	75588341	75588342	chr14:75588342:A:G	rs1288203768	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr14	77285581	77285582	chr14:77285582:C:T	rs2270419	C	T	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr14	78001805	78001806	chr14:78001806:C:T	rs34300255	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr14	78491234	78491235	chr14:78491235:G:A	rs17107757	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr14	78851418	78851419	chr14:78851419:A:G	rs73321604	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr14	78925767	78925768	chr14:78925768:A:G	rs220104	A	G	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr14	79045019	79045020	chr14:79045020:G:A	rs2062741	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr14	79825249	79825250	chr14:79825250:T:C	rs1159039	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr14	80003073	80003074	chr14:80003074:T:C	rs7152384	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr14	80016969	80016970	chr14:80016970:G:A	rs61548990	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	-	7.37702088702296	2.980824008986951	CTCGTAAAG
chr14	80666110	80666111	chr14:80666111:A:C	rs73332683	A	C	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr14	80856620	80856621	chr14:80856621:T:C	rs170595	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr14	81594809	81594810	chr14:81594810:A:G	rs17115620	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr14	81711581	81711582	chr14:81711582:G:A	rs17115759	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr14	81831955	81831956	chr14:81831956:G:A	rs75209887	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr14	81831978	81831979	chr14:81831979:A:G	rs7141084	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr14	81850004	81850005	chr14:81850005:G:A	rs28790672	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	6.77757273876414	CTCGTAAAC
chr14	81989457	81989458	chr14:81989458:T:C	rs77875784	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr14	82123281	82123282	chr14:82123282:A:C	rs35647784	A	C	C	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	5.8130632233164405	CTCATAAAA
chr14	82732034	82732035	chr14:82732035:T:A	rs12882765	T	A	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr14	83354672	83354673	chr14:83354673:A:G	rs17118484	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr14	83826089	83826090	chr14:83826090:T:A	rs9323741	T	A	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr14	84024441	84024442	chr14:84024442:C:T	rs78887500	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	7.299208998835316	ATCGTAAAA
chr14	84108981	84108982	chr14:84108982:C:T	rs1779566	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr14	85722706	85722707	chr14:85722707:T:C	rs58628158	T	C	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr14	85722709	85722710	chr14:85722710:A:G	rs34706434	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr14	87899283	87899284	chr14:87899284:G:A	rs11851156	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr14	88417839	88417840	chr14:88417840:A:T	rs78312728	A	T	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr14	89564799	89564800	chr14:89564800:C:A	rs7359149	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	7.807908079486923	CTCATAAAA
chr14	89590743	89590744	chr14:89590744:G:A	rs243169	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr14	89955436	89955437	chr14:89955437:A:G	rs542709887	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr14	90399470	90399471	chr14:90399471:C:G	rs2300501	C	G	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr14	90440240	90440241	chr14:90440241:C:T	rs1298208	C	T	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr14	91238843	91238844	chr14:91238844:G:A	rs933528	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	6.268873658112532	CTCGTAAAC
chr14	91285039	91285040	chr14:91285040:T:C	rs111597834	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr14	92490831	92490832	chr14:92490832:T:C	rs61977322	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr14	92720021	92720022	chr14:92720022:A:G	rs79926401	A	G	c	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr14	93062720	93062721	chr14:93062721:G:A	rs55901898	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr14	93548492	93548493	chr14:93548493:G:A	rs8022891	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr14	93890853	93890854	chr14:93890854:A:C	rs10137626	A	C	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr14	93985110	93985111	chr14:93985111:A:T	rs11848017	A	T	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr14	94181106	94181107	chr14:94181107:T:A	rs76951852	T	A	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr14	94812561	94812562	chr14:94812562:G:A	rs10139313	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr14	94904980	94904981	chr14:94904981:C:T	rs17091584	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr14	95007741	95007742	chr14:95007742:G:A	rs61976526	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr14	95098200	95098201	chr14:95098201:G:A	rs17091810	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr14	95125160	95125161	chr14:95125161:G:A	rs77034506	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr14	95329248	95329249	chr14:95329249:C:T	rs145989781	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr14	95550450	95550451	chr14:95550451:C:T	rs761807155	C	T	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr14	95550454	95550455	chr14:95550455:T:C	rs11160258	T	C	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr14	95550458	95550459	chr14:95550459:C:T	rs55772287	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr14	95699416	95699417	chr14:95699417:T:C	rs1743537	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr14	95816951	95816952	chr14:95816952:G:A	rs1957928	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr14	95816953	95816954	chr14:95816954:G:A	rs1957929	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr14	95887548	95887549	chr14:95887549:G:A	rs4900299	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr14	95968748	95968749	chr14:95968749:G:C	rs11850140	G	C	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr14	96054980	96054981	chr14:96054981:A:G	rs78365233	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr14	96086182	96086183	chr14:96086183:G:A	rs72702880	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr14	96300105	96300106	chr14:96300106:A:G	rs1280496	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr14	96309386	96309387	chr14:96309387:G:A	rs116862930	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr14	97058334	97058335	chr14:97058335:A:T	rs766706472	A	T	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	5.867108747657061	GTCATAAAA
chr14	97899433	97899434	chr14:97899434:T:A	rs1043148853	T	A	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	7.128991370557837	GTCATAAAA
chr14	98068348	98068349	chr14:98068349:A:G	rs710285	A	G	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr14	98921167	98921168	chr14:98921168:A:G	rs200332	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr14	99117033	99117034	chr14:99117034:C:A	rs11625944	C	A	c	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr14	99751944	99751945	chr14:99751945:G:C	rs10148112	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	1.1387476664487979	CCCGTAAAA
chr14	99772831	99772832	chr14:99772832:T:C	rs75246060	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr14	99773897	99773898	chr14:99773898:G:A	rs538553709	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr14	99773930	99773931	chr14:99773931:C:G	rs143895310	C	G	c	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr14	99972845	99972846	chr14:99972846:C:G	rs565941764	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	2.319922046874276	CTCGTAAAA
chr14	100066427	100066428	chr14:100066428:G:A	rs72711917	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr14	100237860	100237861	chr14:100237861:G:A	rs75790091	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr14	100237871	100237872	chr14:100237872:A:G	rs61992901	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.176266619256224	0.3078240576596286	GGCGTAAAA
chr14	100237884	100237885	chr14:100237885:T:G	rs77981127	T	G	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr14	100781692	100781693	chr14:100781693:C:T	rs67371215	C	T	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr14	101028710	101028711	chr14:101028711:G:A	rs112310883	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr14	101030236	101030237	chr14:101030237:C:T	rs12435041	C	T	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr14	101030241	101030242	chr14:101030242:C:G	rs12435042	C	G	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr14	101250149	101250150	chr14:101250150:A:T	rs1041135620	A	T	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr14	101360129	101360130	chr14:101360130:A:T	rs186420492	A	T	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr14	101365027	101365028	chr14:101365028:C:T	rs117853011	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr14	101405824	101405825	chr14:101405825:C:T	rs116988447	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr14	101617536	101617537	chr14:101617537:G:A	rs6575862	G	A	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr14	103102276	103102277	chr14:103102277:T:A	rs10131298	T	A	A	Hoxd9.mouse_homeodomain_3	7	1	-	7.802115875352188	0.933673313755592	GTCGTAAAG
chr14	103654356	103654357	chr14:103654357:A:G	rs77040510	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr14	103821030	103821031	chr14:103821031:G:C	rs12435668	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.994948769610968	GTCATAAAA
chr14	104075711	104075712	chr14:104075712:T:G	rs112295157	T	G	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr14	104202545	104202546	chr14:104202546:G:T	rs71419805	G	T	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr14	104267643	104267644	chr14:104267644:A:G	rs13313386	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr14	104443123	104443124	chr14:104443124:G:A	rs12880001	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr14	104443139	104443140	chr14:104443140:C:A	rs542899549	C	A	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr14	105004125	105004126	chr14:105004126:T:G	rs28391579	T	G	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr14	105023574	105023575	chr14:105023575:T:C	rs12891766	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr14	105823968	105823969	chr14:105823969:A:G	rs10150506	A	G	.	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr15	20345402	20345403	chr15:20345403:C:T	rs904836	C	T	c	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr15	20345432	20345433	chr15:20345433:C:T	rs904835	C	T	N	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr15	22225773	22225774	chr15:22225774:G:A	rs7177506	G	A	g	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr15	22950915	22950916	chr15:22950916:G:A	rs12050863	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr15	22957224	22957225	chr15:22957225:G:A	rs145055579	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr15	24297650	24297651	chr15:24297651:G:C	rs61993236	G	C	-	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr15	24878551	24878552	chr15:24878552:G:C	rs12906774	G	C	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr15	25704839	25704840	chr15:25704840:C:T	rs376252322	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr15	25721266	25721267	chr15:25721267:C:A	rs17116032	C	A	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr15	25727643	25727644	chr15:25727644:C:T	rs192684401	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr15	25734375	25734376	chr15:25734376:C:T	rs4627308	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.511874469228912	6.118034618409838	ACCGTAAAA
chr15	25734400	25734401	chr15:25734401:T:C	rs72703790	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr15	26901514	26901515	chr15:26901515:A:C	rs12910133	A	C	a	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr15	27482229	27482230	chr15:27482230:C:T	rs12440460	C	T	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr15	27993372	27993373	chr15:27993373:A:G	rs12595216	A	G	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr15	28137235	28137236	chr15:28137236:C:A	rs375066309	C	A	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr15	28696159	28696160	chr15:28696160:C:T	rs184395841	C	T	c	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr15	28696171	28696172	chr15:28696172:A:G	rs2640278	A	G	a	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr15	28890791	28890792	chr15:28890792:T:C	rs149088908	T	C	t	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr15	28902049	28902050	chr15:28902050:A:C	rs148720406	A	C	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr15	28987590	28987591	chr15:28987591:C:G	rs751532073	C	G	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr15	29183183	29183184	chr15:29183184:C:A	rs530335757	C	A	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr15	29447372	29447373	chr15:29447373:C:G	rs116208598	C	G	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr15	29591620	29591621	chr15:29591621:C:T	rs7167069	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr15	29665594	29665595	chr15:29665595:C:T	rs61336287	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr15	30658872	30658873	chr15:30658873:T:G	rs62014603	T	G	.	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr15	31090198	31090199	chr15:31090199:C:G	rs12917436	C	G	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr15	31106912	31106913	chr15:31106913:T:C	rs28407352	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr15	31138233	31138234	chr15:31138234:A:G	rs72714642	A	G	.	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr15	31255023	31255024	chr15:31255024:C:A	chr15:31255024:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr15	31272160	31272161	chr15:31272161:C:T	rs34315032	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr15	31379228	31379229	chr15:31379229:A:G	rs12437800	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr15	31388256	31388257	chr15:31388257:T:C	rs143183553	T	C	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr15	31474020	31474021	chr15:31474021:G:A	rs17228345	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.802115875352188	6.408276024533114	GTCGTAAAG
chr15	32656516	32656517	chr15:32656517:T:G	rs35742971	T	G	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.37702088702296	3.6720918219142176	CTCGTAAAG
chr15	32775390	32775391	chr15:32775391:G:A	rs11630940	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.087808497260832	7.202667727093368	GTCGTAAAC
chr15	32847172	32847173	chr15:32847173:G:A	rs4780044	G	A	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr15	32870251	32870252	chr15:32870252:T:C	rs563867824	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr15	32992033	32992034	chr15:32992034:C:T	rs116093817	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr15	33067748	33067749	chr15:33067749:C:G	rs141655944	C	G	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr15	33964245	33964246	chr15:33964246:T:C	rs117964821	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	6.73017029686311	GTTGTAAAA
chr15	34039399	34039400	chr15:34039400:G:A	rs188261893	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr15	34209564	34209565	chr15:34209565:G:A	rs7164891	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr15	34420778	34420779	chr15:34420779:G:A	rs116069897	G	A	g	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr15	35019757	35019758	chr15:35019758:A:G	rs75687644	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr15	35114322	35114323	chr15:35114323:C:T	rs4924543	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr15	35508408	35508409	chr15:35508409:G:A	rs8035581	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.983181036203886	CTCGTAAAG
chr15	35562839	35562840	chr15:35562840:C:A	rs6495783	C	A	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr15	36030380	36030381	chr15:36030381:T:C	rs79397877	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.69304884965439	7.189980196898917	ATCGTAAAA
chr15	36057540	36057541	chr15:36057541:C:G	rs12908175	C	G	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr15	36175631	36175632	chr15:36175632:G:T	rs761956593	G	T	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr15	36175632	36175633	chr15:36175633:C:T	rs771836524	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr15	36499180	36499181	chr15:36499181:T:A	rs72704461	T	A	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr15	36833966	36833967	chr15:36833967:A:T	rs11637327	A	T	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr15	37405179	37405180	chr15:37405180:A:G	rs186722375	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.123298981813135	5.620230329057661	GTCGGAAAA
chr15	37427462	37427463	chr15:37427463:G:A	rs7167005	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr15	37616339	37616340	chr15:37616340:A:G	rs8041829	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr15	38196637	38196638	chr15:38196638:A:G	rs2134333	A	G	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr15	39092317	39092318	chr15:39092318:G:A	rs35130744	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.698915159352956	3.302718281316947	CCCGTAAAA
chr15	40105219	40105220	chr15:40105220:G:A	rs62018159	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr15	40676332	40676333	chr15:40676333:T:C	rs12912742	T	C	t	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr15	41490485	41490486	chr15:41490486:A:C	rs12440045	A	C	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr15	41585761	41585762	chr15:41585762:G:C	rs12915829	G	C	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr15	41879263	41879264	chr15:41879264:C:T	rs12708402	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr15	43106136	43106137	chr15:43106137:T:A	rs955498389	T	A	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr15	43219072	43219073	chr15:43219073:C:T	rs116804542	C	T	c	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr15	43370560	43370561	chr15:43370561:T:A	rs76609032	T	A	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.123298981813135	4.57036397153	GTCGGAAAA
chr15	44739544	44739545	chr15:44739545:C:T	rs151036355	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.123298981813135	6.511163303359862	GTCGGAAAA
chr15	45445706	45445707	chr15:45445707:C:T	rs2486282	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr15	45705748	45705749	chr15:45705749:C:G	rs573293775	C	G	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr15	45705771	45705772	chr15:45705772:T:C	rs28657633	T	C	t	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr15	45802429	45802430	chr15:45802430:C:A	rs747106566	C	A	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr15	46037347	46037348	chr15:46037348:T:G	rs12595669	T	G	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr15	46645631	46645632	chr15:46645632:T:C	rs545456	T	C	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr15	46765290	46765291	chr15:46765291:C:T	rs76657961	C	T	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr15	47471511	47471512	chr15:47471512:A:T	rs143056644	A	T	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr15	47471528	47471529	chr15:47471529:C:T	rs8034783	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.802115875352188	6.408276024533114	GTCGTAAAG
chr15	48090306	48090307	chr15:48090307:G:A	rs116313351	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr15	48581323	48581324	chr15:48581324:C:A	rs149103324	C	A	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr15	48632784	48632785	chr15:48632785:T:C	rs12324694	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr15	48929393	48929394	chr15:48929394:G:T	rs10519201	G	T	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr15	49265403	49265404	chr15:49265404:C:T	rs7167474	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr15	49354535	49354536	chr15:49354536:G:A	rs182934345	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.123298981813135	5.729459130994061	GTCGGAAAA
chr15	50424709	50424710	chr15:50424710:C:T	rs55916227	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr15	50945977	50945978	chr15:50945978:T:C	rs7162209	T	C	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr15	51183315	51183316	chr15:51183316:G:A	rs1075681	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr15	51349343	51349344	chr15:51349344:G:A	rs12441382	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr15	51366095	51366096	chr15:51366096:G:A	rs4774588	G	A	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr15	51861938	51861939	chr15:51861939:G:C	rs78129459	G	C	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr15	51928064	51928065	chr15:51928065:C:T	rs2623286	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr15	52079235	52079236	chr15:52079236:C:T	rs545062943	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr15	53684489	53684490	chr15:53684490:C:T	rs474461	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr15	53979485	53979486	chr15:53979486:G:C	rs2711592	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr15	54872005	54872006	chr15:54872006:C:T	rs28772656	C	T	c	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr15	55351405	55351406	chr15:55351406:C:T	rs28636865	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr15	55588912	55588913	chr15:55588913:A:G	rs1992236	A	G	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr15	55588960	55588961	chr15:55588961:C:A	rs73417319	C	A	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr15	55601046	55601047	chr15:55601047:A:G	rs62017961	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr15	55696339	55696340	chr15:55696340:A:G	rs16976479	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr15	55823326	55823327	chr15:55823327:A:G	rs11071224	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr15	55846569	55846570	chr15:55846570:C:T	rs140874639	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr15	55846605	55846606	chr15:55846606:C:T	rs144659506	C	T	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr15	55900338	55900339	chr15:55900339:T:C	rs62043810	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	1.1265062080143724	CTCATAAAA
chr15	56553855	56553856	chr15:56553856:T:G	rs12907686	T	G	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr15	56736653	56736654	chr15:56736654:G:A	rs181187656	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	3.5987518915749583	CTCATAAAA
chr15	56910719	56910720	chr15:56910720:T:C	rs12904784	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr15	57310047	57310048	chr15:57310048:T:A	rs2431019	T	A	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr15	57914521	57914522	chr15:57914522:A:C	rs62003162	A	C	A	Hoxd9.mouse_homeodomain_3	6	1	+	8.124010147682185	4.419081082573443	GCCGTAAAA
chr15	58064163	58064164	chr15:58064164:T:C	rs2414530	T	C	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr15	58240666	58240667	chr15:58240667:T:G	rs75837492	T	G	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr15	58628163	58628164	chr15:58628164:T:C	rs12900643	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr15	58987633	58987634	chr15:58987634:T:G	chr15:58987634:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr15	58987658	58987659	chr15:58987659:C:T	rs983052803	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr15	58987671	58987672	chr15:58987672:C:G	rs112968854	C	G	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr15	59124484	59124485	chr15:59124485:C:T	rs147733098	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr15	59587245	59587246	chr15:59587246:C:T	rs79978003	C	T	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr15	59741674	59741675	chr15:59741675:C:T	rs11629911	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr15	60362471	60362472	chr15:60362472:G:A	rs8029375	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr15	60520724	60520725	chr15:60520725:G:A	rs35687658	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr15	60720032	60720033	chr15:60720033:C:T	rs141870666	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr15	60720059	60720060	chr15:60720060:C:A	rs1863270	C	A	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr15	60977259	60977260	chr15:60977260:C:T	rs4638514	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr15	61114866	61114867	chr15:61114867:C:T	rs17237696	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr15	61156458	61156459	chr15:61156459:G:T	rs188884813	G	T	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr15	61460648	61460649	chr15:61460649:G:T	rs527814700	G	T	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr15	61749233	61749234	chr15:61749234:G:A	rs11854497	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr15	62449950	62449951	chr15:62449951:G:C	rs1092362	G	C	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr15	62532484	62532485	chr15:62532485:T:C	rs12904839	T	C	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr15	62998334	62998335	chr15:62998335:A:C	rs10775183	A	C	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr15	62998357	62998358	chr15:62998358:C:G	rs147425364	C	G	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr15	63606413	63606414	chr15:63606414:C:T	rs62012786	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr15	63752255	63752256	chr15:63752256:T:C	rs144739879	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr15	64370700	64370701	chr15:64370701:A:G	rs7165405	A	G	a	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr15	64437820	64437821	chr15:64437821:A:G	rs28572317	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr15	64444141	64444142	chr15:64444142:C:T	rs143838141	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr15	65416863	65416864	chr15:65416864:A:G	rs114014182	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr15	65846230	65846231	chr15:65846231:G:A	rs56108436	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr15	65854960	65854961	chr15:65854961:G:A	rs55642578	G	A	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr15	65870221	65870222	chr15:65870222:C:T	rs117220954	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr15	66203292	66203293	chr15:66203293:T:A	rs12148583	T	A	A	Hoxd9.mouse_homeodomain_3	8	1	-	7.698915159352956	6.407862771970597	CCCGTAAAA
chr15	66474208	66474209	chr15:66474209:G:T	rs57583621	G	T	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr15	66569722	66569723	chr15:66569723:G:A	rs57117342	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr15	66734540	66734541	chr15:66734541:C:G	rs10163061	C	G	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr15	66876717	66876718	chr15:66876718:T:C	rs28631852	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr15	66980608	66980609	chr15:66980609:G:A	rs11852468	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	3.5987518915749583	CTCATAAAA
chr15	66997334	66997335	chr15:66997335:T:C	rs1419645688	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr15	67182372	67182373	chr15:67182373:G:A	rs79545745	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.69304884965439	7.299208998835316	ATCGTAAAA
chr15	67942076	67942077	chr15:67942077:A:T	rs112440450	A	T	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr15	68114288	68114289	chr15:68114289:T:G	rs116869465	T	G	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr15	68330008	68330009	chr15:68330009:T:G	rs7179228	T	G	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr15	68396057	68396058	chr15:68396058:G:A	rs1115528	G	A	g	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr15	68473594	68473595	chr15:68473595:C:A	rs12437844	C	A	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.511874469228912	5.750221082388535	ACCGTAAAA
chr15	68473595	68473596	chr15:68473596:G:A	rs4468552	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.511874469228912	6.626733699061445	ACCGTAAAA
chr15	68886461	68886462	chr15:68886462:A:G	rs12916790	A	G	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr15	69453754	69453755	chr15:69453755:G:A	chr15:69453755:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr15	69588230	69588231	chr15:69588231:C:T	rs12442806	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr15	69764414	69764415	chr15:69764415:G:A	rs57781987	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr15	69807849	69807850	chr15:69807850:T:G	rs17323663	T	G	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr15	69817793	69817794	chr15:69817794:A:G	rs72745855	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.123298981813135	5.620230329057661	GTCGGAAAA
chr15	70064220	70064221	chr15:70064221:C:A	rs61999938	C	A	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr15	70079437	70079438	chr15:70079438:C:G	rs78212770	C	G	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr15	70140777	70140778	chr15:70140778:G:C	rs56350203	G	C	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr15	70679498	70679499	chr15:70679499:T:C	rs945733981	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr15	70995763	70995764	chr15:70995764:C:T	rs115943840	C	T	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr15	71296349	71296350	chr15:71296350:T:C	rs4776546	T	C	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr15	71431263	71431264	chr15:71431264:G:T	rs4297638	G	T	T	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr15	71443675	71443676	chr15:71443676:C:T	rs75702066	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.8073383678986845	3.411141489862676	CTCGTTAAA
chr15	71471750	71471751	chr15:71471751:C:T	rs78768875	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr15	71677386	71677387	chr15:71677387:A:C	rs4776566	A	C	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr15	71791295	71791296	chr15:71791296:T:G	rs1046339898	T	G	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr15	71976644	71976645	chr15:71976645:A:G	rs10518979	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr15	72275615	72275616	chr15:72275616:G:T	rs2912231	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.511874469228912	4.795730014641306	ACCGTAAAA
chr15	73802736	73802737	chr15:73802737:C:T	rs964530584	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr15	73832434	73832435	chr15:73832435:C:G	rs16958352	C	G	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr15	74545768	74545769	chr15:74545769:G:A	chr15:74545769:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr15	75462143	75462144	chr15:75462144:A:C	rs115522398	A	C	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr15	78245574	78245575	chr15:78245575:T:C	rs4283196	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr15	78720133	78720134	chr15:78720134:G:A	rs34550457	G	A	-	Hoxd9.mouse_homeodomain_3	2	1	-	7.123298981813135	5.729459130994061	GTCGGAAAA
chr15	78847748	78847749	chr15:78847749:G:C	rs62011033	G	C	g	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr15	78873593	78873594	chr15:78873594:G:A	chr15:78873594:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr15	78873845	78873846	chr15:78873846:G:C	rs1455040820	G	C	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr15	78873853	78873854	chr15:78873854:G:T	rs74556278	G	T	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr15	78873872	78873873	chr15:78873873:A:G	rs192319685	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	8.880089539778433	2.011646978181838	CTCGTAAAA
chr15	78874276	78874277	chr15:78874277:A:C	rs59312571	A	C	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr15	78874282	78874283	chr15:78874283:C:T	rs149999612	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr15	79370650	79370651	chr15:79370651:A:G	rs8034762	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr15	79615300	79615301	chr15:79615301:C:T	rs1872825	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr15	79773207	79773208	chr15:79773208:C:T	rs62026584	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr15	79778106	79778107	chr15:79778107:T:C	rs9806251	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr15	79979657	79979658	chr15:79979658:G:A	rs11631974	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr15	80503667	80503668	chr15:80503668:T:C	rs28687121	T	C	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr15	80512284	80512285	chr15:80512285:T:C	rs74027805	T	C	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr15	80781231	80781232	chr15:80781232:G:A	rs12437679	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr15	80864611	80864612	chr15:80864612:C:T	rs12906003	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr15	80864617	80864618	chr15:80864618:G:A	rs7172166	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr15	81366742	81366743	chr15:81366743:G:A	rs8033908	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr15	81531882	81531883	chr15:81531883:A:T	chr15:81531883:A:T	A	T	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr15	81889589	81889590	chr15:81889590:G:A	rs4778942	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr15	82100956	82100957	chr15:82100957:C:T	rs2292070	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr15	82100962	82100963	chr15:82100963:A:G	rs2292069	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr15	82554865	82554866	chr15:82554866:T:C	rs1145172	T	C	t	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr15	82950582	82950583	chr15:82950583:T:A	rs72755936	T	A	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr15	84891783	84891784	chr15:84891784:A:C	rs141181635	A	C	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr15	85178425	85178426	chr15:85178426:G:A	rs8029896	G	A	.	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr15	85284411	85284412	chr15:85284412:C:T	rs2002641	C	T	c	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr15	85458667	85458668	chr15:85458668:C:G	rs7166507	C	G	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr15	85585409	85585410	chr15:85585410:T:A	rs10520594	T	A	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr15	85642071	85642072	chr15:85642072:C:T	rs416870	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr15	85810920	85810921	chr15:85810921:A:T	rs8032526	A	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	6.163945085190828	CTCATAAAA
chr15	85864952	85864953	chr15:85864953:A:C	rs4842906	A	C	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr15	86125982	86125983	chr15:86125983:A:G	rs766900	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	7.238869377514717	GTCATAAAA
chr15	86125988	86125989	chr15:86125989:G:T	rs12594338	G	T	g	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr15	86347254	86347255	chr15:86347255:C:A	rs1390862	C	A	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr15	87090966	87090967	chr15:87090967:A:G	rs7183040	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr15	87090974	87090975	chr15:87090975:C:T	rs7182390	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr15	87239984	87239985	chr15:87239985:C:T	rs12439869	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr15	87571035	87571036	chr15:87571036:A:G	rs11858215	A	G	G	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr15	88042265	88042266	chr15:88042266:G:A	rs56041749	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr15	88646702	88646703	chr15:88646703:T:C	rs8025352	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr15	88975200	88975201	chr15:88975201:A:T	rs12899970	A	T	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr15	89159066	89159067	chr15:89159067:T:C	rs4932477	T	C	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr15	89386375	89386376	chr15:89386376:T:C	rs149234	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr15	90362933	90362934	chr15:90362934:T:C	rs74038632	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr15	90420073	90420074	chr15:90420074:G:T	rs80042044	G	T	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr15	90568207	90568208	chr15:90568208:T:C	chr15:90568208:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr15	90660161	90660162	chr15:90660162:G:C	rs79722842	G	C	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr15	90660184	90660185	chr15:90660185:T:C	rs111688267	T	C	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr15	90668469	90668470	chr15:90668470:C:T	rs1125280	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr15	90901342	90901343	chr15:90901343:T:G	rs11073957	T	G	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr15	91198846	91198847	chr15:91198847:C:G	rs76246778	C	G	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr15	91198853	91198854	chr15:91198854:G:A	rs2285531	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	6.906634116835357	6.021493346667889	GCCGTAAAC
chr15	91279538	91279539	chr15:91279539:T:C	rs112949762	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr15	91409189	91409190	chr15:91409190:A:G	rs140218196	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr15	91422973	91422974	chr15:91422974:G:A	rs4450375	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr15	92108080	92108081	chr15:92108081:A:G	rs2015808	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr15	92196597	92196598	chr15:92196598:G:C	rs148473634	G	C	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr15	92272281	92272282	chr15:92272282:A:G	rs16946658	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr15	92573155	92573156	chr15:92573156:C:T	rs28633436	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr15	92616506	92616507	chr15:92616507:A:G	rs8043510	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr15	92840117	92840118	chr15:92840118:C:T	rs8030383	C	T	t	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr15	92840135	92840136	chr15:92840136:G:A	rs80053306	G	A	g	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr15	92840146	92840147	chr15:92840147:A:T	rs8031154	A	T	a	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr15	92866679	92866680	chr15:92866680:C:G	rs11074114	C	G	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr15	92887932	92887933	chr15:92887933:C:T	rs11074115	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr15	93074560	93074561	chr15:93074561:A:T	rs4778094	A	T	T	Hoxd9.mouse_homeodomain_3	1	1	-	7.37702088702296	4.824085876739825	CTCGTAAAG
chr15	93500354	93500355	chr15:93500355:C:T	rs149940502	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr15	93771323	93771324	chr15:93771324:A:G	rs34145612	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr15	93963573	93963574	chr15:93963574:G:C	rs12907430	G	C	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr15	94132312	94132313	chr15:94132313:T:C	rs1479835	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr15	94230858	94230859	chr15:94230859:G:A	rs72765495	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr15	94277707	94277708	chr15:94277708:T:C	rs28871030	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	1.8045007974963716	GTCATAAAA
chr15	94834642	94834643	chr15:94834643:C:G	rs7165511	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr15	95039268	95039269	chr15:95039269:G:A	rs7170407	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr15	95605209	95605210	chr15:95605210:G:C	rs6496126	G	C	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr15	95684690	95684691	chr15:95684691:C:T	rs12898856	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr15	96102742	96102743	chr15:96102743:A:G	rs7170032	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr15	96121898	96121899	chr15:96121899:A:C	rs7178874	A	C	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr15	96285286	96285287	chr15:96285287:G:A	rs114115125	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr15	96285288	96285289	chr15:96285289:C:G	rs115922577	C	G	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr15	96789485	96789486	chr15:96789486:C:T	rs77952572	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr15	96893330	96893331	chr15:96893331:C:T	rs141976422	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr15	97068054	97068055	chr15:97068055:C:T	rs7182371	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr15	97705833	97705834	chr15:97705834:A:G	rs12910665	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr15	97901955	97901956	chr15:97901956:T:A	rs8031717	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr15	97967370	97967371	chr15:97967371:T:G	rs79101768	T	G	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr15	98000577	98000578	chr15:98000578:G:A	rs189488592	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.911344677288588	GTCGTAAAA
chr15	98085460	98085461	chr15:98085461:G:A	rs1480086	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr15	98139056	98139057	chr15:98139057:A:T	rs4965464	A	T	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr15	98139063	98139064	chr15:98139064:G:A	rs7166587	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr15	98164749	98164750	chr15:98164750:T:C	rs11247107	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr15	98202669	98202670	chr15:98202670:T:C	rs2585209	T	C	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr15	98428589	98428590	chr15:98428590:C:A	rs536626591	C	A	.	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr15	98428607	98428608	chr15:98428608:G:A	rs36016710	G	A	.	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	6.305075308533882	CCCGTAAAA
chr15	98583621	98583622	chr15:98583622:T:A	rs34000146	T	A	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr15	98727194	98727195	chr15:98727195:G:A	rs114674522	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr15	98727211	98727212	chr15:98727212:T:C	rs55686521	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr15	98890494	98890495	chr15:98890495:C:T	rs567514090	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr15	99015999	99016000	chr15:99016000:A:C	rs12900877	A	C	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr15	99030165	99030166	chr15:99030166:T:G	rs2663101	T	G	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.232433356227913	6.050547809933386	GTCGTTAAA
chr15	99074984	99074985	chr15:99074985:A:G	rs11856750	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr15	99089204	99089205	chr15:99089205:G:C	rs36132317	G	C	c	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	4.543633166302246	CCCGTAAAA
chr15	99095687	99095688	chr15:99095688:T:A	rs62023824	T	A	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr15	99095696	99095697	chr15:99095697:C:T	rs12905515	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.511874469228912	6.118034618409838	ACCGTAAAA
chr15	99202357	99202358	chr15:99202358:T:C	rs2623178	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr15	99202371	99202372	chr15:99202372:G:A	rs2602037	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr15	100047404	100047405	chr15:100047405:C:T	rs28440071	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr15	100104348	100104349	chr15:100104349:T:C	rs12442513	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr15	100202580	100202581	chr15:100202581:G:A	rs8035836	G	A	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr15	100349290	100349291	chr15:100349291:T:G	rs2289584	T	G	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr15	100602529	100602530	chr15:100602530:C:T	rs1019982449	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	6.906634116835357	6.294498438382084	GCCGTAAAC
chr15	100919220	100919221	chr15:100919221:G:T	rs553278513	G	T	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr15	100931063	100931064	chr15:100931064:T:C	rs73480697	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr15	101045463	101045464	chr15:101045464:A:G	rs8037111	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr15	101072337	101072338	chr15:101072338:A:T	rs7179909	A	T	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr15	101322926	101322927	chr15:101322927:G:A	rs1871976	G	A	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr15	101322929	101322930	chr15:101322930:A:C	rs1871977	A	C	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr15	101490592	101490593	chr15:101490593:T:C	rs28441052	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr15	101641280	101641281	chr15:101641281:C:T	chr15:101641281:C:T	C	T	c	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr15	101654199	101654200	chr15:101654200:T:C	rs520897	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr16	334925	334926	chr16:334926:A:G	rs74000529	A	G	a	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr16	370621	370622	chr16:370622:G:A	rs543388524	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr16	370623	370624	chr16:370624:G:C	rs113643804	G	C	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr16	370625	370626	chr16:370626:C:T	rs575142580	C	T	C	Hoxd9.mouse_homeodomain_3	1	1	+	7.511874469228912	8.69304884965439	ACCGTAAAA
chr16	370644	370645	chr16:370645:T:G	rs112596311	T	G	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr16	370647	370648	chr16:370648:A:G	chr16:370648:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr16	370647	370648	chr16:370648:A:T	rs79842904	A	T	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr16	832941	832942	chr16:832942:G:A	rs574480919	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	1273387	1273388	chr16:1273388:A:C	rs8055458	A	C	.	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr16	1369689	1369690	chr16:1369690:G:A	rs11862246	G	A	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr16	1457840	1457841	chr16:1457841:C:T	rs8061743	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr16	1457841	1457842	chr16:1457842:G:C	rs8060503	G	C	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr16	1556737	1556738	chr16:1556738:A:G	rs12927247	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr16	1899224	1899225	chr16:1899225:C:T	rs2917517	C	T	c	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr16	1899257	1899258	chr16:1899258:C:G	rs2982451	C	G	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr16	1964821	1964822	chr16:1964822:A:G	rs547578561	A	G	a	Hoxd9.mouse_homeodomain_3	8	1	+	7.123298981813135	5.620230329057661	GTCGGAAAA
chr16	1964829	1964830	chr16:1964830:G:A	rs962666567	G	A	g	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr16	1964832	1964833	chr16:1964833:A:G	rs17135718	A	G	g	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr16	1964833	1964834	chr16:1964834:C:G	rs116433481	C	G	c	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr16	1964836	1964837	chr16:1964837:A:C	rs569663356	A	C	a	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr16	2540415	2540416	chr16:2540416:G:A	rs116892143	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr16	2668129	2668130	chr16:2668130:T:C	rs11643510	T	C	t	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr16	3094862	3094863	chr16:3094863:G:C	rs902617677	G	C	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr16	4044951	4044952	chr16:4044952:A:G	rs113813732	A	G	G	Hoxd9.mouse_homeodomain_3	4	1	-	7.37702088702296	4.21444702211198	CTCGTAAAG
chr16	4044952	4044953	chr16:4044953:C:G	rs7198704	C	G	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	4.221738893972249	CTCGTAAAG
chr16	4209776	4209777	chr16:4209777:C:A	rs4786475	C	A	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr16	4271693	4271694	chr16:4271694:G:C	rs148371505	G	C	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr16	4271698	4271699	chr16:4271699:A:G	rs951999404	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr16	4377823	4377824	chr16:4377824:A:C	rs556704342	A	C	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr16	4679990	4679991	chr16:4679991:G:C	rs143068748	G	C	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr16	4694603	4694604	chr16:4694604:T:G	rs201516097	T	G	.	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr16	4694604	4694605	chr16:4694605:T:G	rs529787275	T	G	.	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr16	6232487	6232488	chr16:6232488:A:G	rs62015083	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr16	7246947	7246948	chr16:7246948:A:C	rs11077165	A	C	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr16	7517387	7517388	chr16:7517388:G:T	rs62012729	G	T	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr16	8113163	8113164	chr16:8113164:C:G	rs58103945	C	G	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr16	8113182	8113183	chr16:8113183:A:G	rs28863484	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr16	10081613	10081614	chr16:10081614:T:C	rs1448271	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr16	10179678	10179679	chr16:10179679:G:T	rs80099381	G	T	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	4.872892697808469	CTCGTAAAT
chr16	10270731	10270732	chr16:10270732:C:T	rs1641802	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr16	10386969	10386970	chr16:10386970:G:C	rs148483466	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.802115875352188	1.24194838244803	GTCGTAAAG
chr16	10386988	10386989	chr16:10386989:T:C	rs7195621	T	C	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	10584980	10584981	chr16:10584981:A:G	rs2068355	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr16	10755398	10755399	chr16:10755399:A:G	rs191632392	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr16	11051104	11051105	chr16:11051105:T:C	rs16957984	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr16	11079267	11079268	chr16:11079268:T:G	rs376779554	T	G	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr16	11274049	11274050	chr16:11274050:G:C	rs2857764	G	C	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr16	11797839	11797840	chr16:11797840:C:T	rs143964837	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr16	11959277	11959278	chr16:11959278:T:C	rs426424	T	C	c	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr16	12207621	12207622	chr16:12207622:G:A	rs75745567	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.802115875352188	6.408276024533114	GTCGTAAAG
chr16	12259525	12259526	chr16:12259526:G:A	rs117621014	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr16	12579199	12579200	chr16:12579200:C:G	rs10852353	C	G	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr16	12679423	12679424	chr16:12679424:T:A	rs9937370	T	A	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr16	12809055	12809056	chr16:12809056:T:C	rs9921873	T	C	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr16	12809064	12809065	chr16:12809065:G:A	rs7199083	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.802115875352188	7.189980196898917	GTCGTAAAG
chr16	12809067	12809068	chr16:12809068:G:A	rs7199085	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr16	12971669	12971670	chr16:12971670:G:A	rs11075176	G	A	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr16	13422145	13422146	chr16:13422146:C:A	rs2866478	C	A	A	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.118436152938057	CTCGTAAAA
chr16	13436240	13436241	chr16:13436241:G:A	rs11646588	G	A	g	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr16	13436246	13436247	chr16:13436247:G:A	rs34601537	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr16	13438945	13438946	chr16:13438946:C:T	rs756986	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr16	13719221	13719222	chr16:13719222:T:C	rs7193709	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	6.73017029686311	GTTGTAAAA
chr16	14300986	14300987	chr16:14300987:C:T	rs193536	C	T	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr16	14379012	14379013	chr16:14379013:G:A	rs6498507	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr16	15960836	15960837	chr16:15960837:A:C	rs215099	A	C	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr16	16143896	16143897	chr16:16143897:A:G	rs212093	A	G	a	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr16	16638488	16638489	chr16:16638489:C:T	rs2606527	C	T	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr16	16638519	16638520	chr16:16638520:C:G	rs116207548	C	G	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr16	16868665	16868666	chr16:16868666:C:G	rs56383715	C	G	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr16	16939884	16939885	chr16:16939885:G:C	rs9888954	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.511874469228912	0.9517069763247542	ACCGTAAAA
chr16	17828185	17828186	chr16:17828186:A:C	chr16:17828186:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr16	17828205	17828206	chr16:17828206:A:C	rs28478272	A	C	A	Hoxd9.mouse_homeodomain_3	6	1	+	7.994948769610968	4.2900197045022255	CTCATAAAA
chr16	17828214	17828215	chr16:17828215:C:G	rs4553614	C	G	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	19323498	19323499	chr16:19323499:C:T	rs8059096	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr16	19375955	19375956	chr16:19375956:G:A	rs7195869	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr16	19568942	19568943	chr16:19568943:T:C	rs2353918	T	C	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr16	20192754	20192755	chr16:20192755:G:A	rs58444485	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	20309663	20309664	chr16:20309664:A:G	rs4780282	A	G	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr16	20900575	20900576	chr16:20900576:G:C	rs79898703	G	C	g	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr16	21076701	21076702	chr16:21076702:A:C	rs9926773	A	C	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr16	22722437	22722438	chr16:22722438:G:A	rs12595872	G	A	g	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr16	23905272	23905273	chr16:23905273:C:T	rs146054397	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr16	23905303	23905304	chr16:23905304:T:A	rs17753694	T	A	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr16	23955372	23955373	chr16:23955373:G:A	rs72779908	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr16	24526461	24526462	chr16:24526462:C:T	rs555802266	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr16	24526464	24526465	chr16:24526465:C:T	rs16973746	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr16	24526476	24526477	chr16:24526477:G:A	rs72783879	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	24991028	24991029	chr16:24991029:A:T	rs4787294	A	T	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr16	26133653	26133654	chr16:26133654:C:T	rs4480808	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr16	27179623	27179624	chr16:27179624:T:C	rs1533418	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.491880116855494	CTCATAAAA
chr16	27179649	27179650	chr16:27179650:G:A	rs1328127814	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr16	27315794	27315795	chr16:27315795:A:G	rs11645013	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	27800054	27800055	chr16:27800055:T:C	rs719956	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr16	28212296	28212297	chr16:28212297:C:T	chr16:28212297:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr16	29177920	29177921	chr16:29177921:G:A	rs59650907	G	A	.	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr16	29218855	29218856	chr16:29218856:A:G	rs112918513	A	G	.	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr16	30065696	30065697	chr16:30065697:A:G	rs573166112	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	7.37702088702296	3.3990409127047245	CTCGTAAAG
chr16	30065708	30065709	chr16:30065709:C:T	rs527778531	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr16	30558395	30558396	chr16:30558396:T:C	rs568021543	T	C	t	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr16	30558410	30558411	chr16:30558411:T:G	chr16:30558411:T:G	T	G	t	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr16	32085545	32085546	chr16:32085546:G:T	rs529170373	G	T	g	Hoxd9.mouse_homeodomain_3	0	1	+	7.176266619256224	2.3549747528909863	GGCGTAAAA
chr16	32085568	32085569	chr16:32085569:C:G	rs12918806	C	G	N	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr16	49487038	49487039	chr16:49487039:T:C	rs73580805	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr16	49757375	49757376	chr16:49757376:T:C	rs115373892	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr16	49900565	49900566	chr16:49900566:T:C	rs77134286	T	C	T	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr16	50799976	50799977	chr16:50799977:T:C	rs111951225	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr16	50806353	50806354	chr16:50806354:G:T	rs115107819	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	51431043	51431044	chr16:51431044:T:C	rs55713737	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr16	51557106	51557107	chr16:51557107:G:A	rs112969047	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr16	52645992	52645993	chr16:52645993:A:G	rs3104826	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr16	52777081	52777082	chr16:52777082:A:G	rs8047392	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	+	8.124010147682185	6.620941494926711	GCCGTAAAA
chr16	53147718	53147719	chr16:53147719:A:G	rs79243132	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr16	53160029	53160030	chr16:53160030:A:C	chr16:53160030:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr16	53160040	53160041	chr16:53160041:A:G	rs73599583	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr16	53209039	53209040	chr16:53209040:T:C	rs72797701	T	C	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	53817391	53817392	chr16:53817392:G:A	rs9972717	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr16	53922914	53922915	chr16:53922915:A:G	rs11076011	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	+	7.911344677288588	6.408276024533114	GTTGTAAAA
chr16	53936972	53936973	chr16:53936973:G:A	rs2024470	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr16	54172550	54172551	chr16:54172551:A:G	rs59046992	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr16	54447025	54447026	chr16:54447026:G:A	rs9926409	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr16	55080449	55080450	chr16:55080450:T:C	rs12444548	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	55476082	55476083	chr16:55476083:C:T	rs7189232	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	8.420043757940196	GTCGTAAAA
chr16	56090952	56090953	chr16:56090953:C:A	rs139728055	C	A	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr16	56106684	56106685	chr16:56106685:C:A	rs1510187	C	A	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr16	56917363	56917364	chr16:56917364:A:G	rs28168	A	G	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr16	57270898	57270899	chr16:57270899:T:C	rs66514732	T	C	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr16	57759608	57759609	chr16:57759609:G:A	rs12929142	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr16	57785022	57785023	chr16:57785023:A:G	rs8058401	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr16	57896040	57896041	chr16:57896041:G:A	rs78070427	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr16	57911763	57911764	chr16:57911764:G:A	rs77399988	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr16	58352900	58352901	chr16:58352901:G:T	rs11865378	G	T	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr16	58811552	58811553	chr16:58811553:G:A	rs62066384	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr16	58848592	58848593	chr16:58848593:G:A	rs972702896	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	3.5987518915749583	CTCATAAAA
chr16	58885742	58885743	chr16:58885743:T:A	rs8056541	T	A	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr16	58983246	58983247	chr16:58983247:A:G	rs7184397	A	G	g	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr16	59148597	59148598	chr16:59148598:A:T	rs150550258	A	T	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr16	59655339	59655340	chr16:59655340:C:T	rs924465	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr16	59886071	59886072	chr16:59886072:T:A	rs75736470	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr16	59976881	59976882	chr16:59976882:C:T	rs7190278	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr16	59976919	59976920	chr16:59976920:G:A	rs4785084	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr16	60091503	60091504	chr16:60091504:A:G	rs2582596	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr16	60190668	60190669	chr16:60190669:G:A	rs3848267	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr16	61296979	61296980	chr16:61296980:C:T	rs7498991	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr16	61488621	61488622	chr16:61488622:T:A	rs2407898	T	A	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	5.179238935732819	CTCATAAAA
chr16	61855999	61856000	chr16:61856000:T:C	rs1978796	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.176266619256224	5.673197966500751	GGCGTAAAA
chr16	62820680	62820681	chr16:62820681:G:A	rs2962459	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr16	63926752	63926753	chr16:63926753:C:T	rs9926808	C	T	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr16	64168092	64168093	chr16:64168093:G:A	rs7202850	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.123298981813135	5.729459130994061	GTCGGAAAA
chr16	64391088	64391089	chr16:64391089:C:T	rs72782933	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	64438943	64438944	chr16:64438944:G:A	rs62041637	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	64476704	64476705	chr16:64476705:G:A	rs17643139	G	A	g	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr16	64639049	64639050	chr16:64639050:A:G	rs7205933	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr16	65306639	65306640	chr16:65306640:G:A	rs1389918	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr16	65523703	65523704	chr16:65523704:A:G	rs929863	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr16	66597638	66597639	chr16:66597639:A:G	rs61066285	A	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr16	66872967	66872968	chr16:66872968:G:A	rs187431	G	A	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr16	68451553	68451554	chr16:68451554:T:C	rs16957979	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr16	68658281	68658282	chr16:68658282:G:A	rs137986748	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr16	69223973	69223974	chr16:69223974:T:C	rs114040222	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr16	70127062	70127063	chr16:70127063:G:A	rs8044841	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.087808497260832	7.4756728188075625	GTCGTAAAC
chr16	70688388	70688389	chr16:70688389:G:A	rs772037482	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	6.268873658112532	CTCGTAAAC
chr16	71425724	71425725	chr16:71425725:A:T	rs12325234	A	T	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	72203056	72203057	chr16:72203057:G:A	rs2023929	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr16	72931863	72931864	chr16:72931864:G:A	rs758042832	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr16	73170921	73170922	chr16:73170922:G:A	rs959002554	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.123298981813135	5.729459130994061	GTCGGAAAA
chr16	73341770	73341771	chr16:73341771:G:A	rs4447458	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr16	73455133	73455134	chr16:73455134:C:A	rs12925165	C	A	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr16	73717830	73717831	chr16:73717831:G:A	rs9923521	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	74157050	74157051	chr16:74157051:T:C	rs56119134	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	7.238869377514717	GTCATAAAA
chr16	74801315	74801316	chr16:74801316:T:C	rs2113274	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	75189592	75189593	chr16:75189593:G:T	rs10871304	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.615367500182583	CTCGTAAAG
chr16	76021859	76021860	chr16:76021860:C:T	rs17677328	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	7.299208998835316	ATCGTAAAA
chr16	76195655	76195656	chr16:76195656:G:A	rs8047283	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr16	76377681	76377682	chr16:76377682:A:G	rs9931521	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr16	76880453	76880454	chr16:76880454:A:T	rs36052639	A	T	-	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr16	77067938	77067939	chr16:77067939:A:G	rs1485793	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr16	77238978	77238979	chr16:77238979:C:T	rs74551760	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr16	77418312	77418313	chr16:77418313:G:A	rs10781985	G	A	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr16	77418329	77418330	chr16:77418330:A:G	rs10781986	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr16	77418343	77418344	chr16:77418344:T:C	rs10781987	T	C	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr16	77442211	77442212	chr16:77442212:T:C	rs1038951	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr16	77556558	77556559	chr16:77556559:C:G	rs62043937	C	G	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr16	77556588	77556589	chr16:77556589:C:A	rs282990	C	A	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr16	77569327	77569328	chr16:77569328:C:T	rs415745	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr16	77807104	77807105	chr16:77807105:A:G	rs4514690	A	G	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr16	77807132	77807133	chr16:77807133:A:C	rs16946521	A	C	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr16	77840251	77840252	chr16:77840252:C:G	rs1075355	C	G	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr16	77841406	77841407	chr16:77841407:G:C	rs2434853	G	C	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr16	77938036	77938037	chr16:77938037:T:G	rs73568611	T	G	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	5.724807546727723	CTCATAAAA
chr16	77971635	77971636	chr16:77971636:C:T	rs111366	C	T	T	Hoxd9.mouse_homeodomain_3	4	1	-	7.123298981813135	6.142610663196681	GTCGGAAAA
chr16	78119173	78119174	chr16:78119174:G:A	rs67486703	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr16	78217215	78217216	chr16:78217216:C:G	rs12051355	C	G	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr16	78381241	78381242	chr16:78381242:C:T	rs11150071	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr16	78442568	78442569	chr16:78442569:T:A	rs13333164	T	A	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr16	78452223	78452224	chr16:78452224:T:A	rs11150080	T	A	A	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr16	78463825	78463826	chr16:78463826:T:C	rs2738658	T	C	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr16	78670301	78670302	chr16:78670302:T:C	rs1077963	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.123298981813135	0.507756021369311	GTCGGAAAA
chr16	78685179	78685180	chr16:78685180:G:C	rs2738630	G	C	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	78716990	78716991	chr16:78716991:T:C	rs13330253	T	C	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr16	78720499	78720500	chr16:78720500:T:C	rs11645548	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr16	78786673	78786674	chr16:78786674:G:C	rs4887988	G	C	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	4.543633166302246	CCCGTAAAA
chr16	78895009	78895010	chr16:78895010:G:T	rs559514817	G	T	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr16	78895048	78895049	chr16:78895049:G:C	rs1318263011	G	C	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr16	79164831	79164832	chr16:79164832:C:G	rs16949745	C	G	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr16	79164851	79164852	chr16:79164852:T:C	chr16:79164852:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr16	79284852	79284853	chr16:79284853:G:A	rs73571308	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr16	79359209	79359210	chr16:79359210:C:T	rs2068174	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.176266619256224	6.291125849088757	GGCGTAAAA
chr16	79431664	79431665	chr16:79431665:C:T	rs4888977	C	T	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr16	79717693	79717694	chr16:79717694:C:T	rs58722186	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	79717697	79717698	chr16:79717698:G:A	rs4587993	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr16	79772183	79772184	chr16:79772184:A:G	rs66616635	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr16	80122474	80122475	chr16:80122475:A:G	rs115608605	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr16	80209054	80209055	chr16:80209055:T:C	rs12149918	T	C	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr16	80258455	80258456	chr16:80258456:A:G	rs7200683	A	G	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr16	80389517	80389518	chr16:80389518:A:C	rs7205103	A	C	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr16	80971835	80971836	chr16:80971836:T:A	rs13332890	T	A	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	5.867108747657061	GTCATAAAA
chr16	81108651	81108652	chr16:81108652:T:C	rs1869348	T	C	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr16	81123202	81123203	chr16:81123203:G:A	rs16954688	G	A	g	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr16	81123387	81123388	chr16:81123388:G:T	rs3803570	G	T	g	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr16	81448732	81448733	chr16:81448733:A:T	rs77318465	A	T	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.662713508931605	0.7942709473350096	CTCGTAAAC
chr16	81500989	81500990	chr16:81500990:T:C	rs144275051	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr16	81578794	81578795	chr16:81578795:G:A	rs16955583	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.123298981813135	6.2381582116456675	GTCGGAAAA
chr16	81627036	81627037	chr16:81627037:G:A	rs7188009	G	A	g	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr16	81627191	81627192	chr16:81627192:G:C	rs150599312	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	8.420043757940196	CTCATAAAA
chr16	81977655	81977656	chr16:81977656:C:T	rs12928625	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.123298981813135	6.2381582116456675	GTCGGAAAA
chr16	82638721	82638722	chr16:82638722:C:T	rs12922394	C	T	c	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr16	82715955	82715956	chr16:82715956:C:G	rs76717805	C	G	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr16	82996607	82996608	chr16:82996608:G:A	rs72792149	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr16	83012034	83012035	chr16:83012035:C:G	rs77738362	C	G	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr16	83135170	83135171	chr16:83135171:C:T	rs8056019	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr16	83229913	83229914	chr16:83229914:C:G	rs16959838	C	G	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.8073383678986845	8.232433356227913	CTCGTTAAA
chr16	83365466	83365467	chr16:83365467:G:C	rs9923619	G	C	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr16	83365495	83365496	chr16:83365496:A:T	rs75620104	A	T	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	83577787	83577788	chr16:83577788:A:C	rs73607881	A	C	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr16	83599819	83599820	chr16:83599820:A:G	rs17687469	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr16	83915900	83915901	chr16:83915901:T:C	rs1127382	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr16	84039447	84039448	chr16:84039448:G:A	rs4782879	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr16	84459171	84459172	chr16:84459172:C:T	rs377760863	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr16	84544555	84544556	chr16:84544556:C:T	rs990093169	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr16	84589877	84589878	chr16:84589878:T:C	rs1429264	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr16	84589909	84589910	chr16:84589910:A:C	rs2288583	A	C	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr16	84617321	84617322	chr16:84617322:C:G	rs150356410	C	G	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr16	84689508	84689509	chr16:84689509:G:A	rs28415400	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr16	84764030	84764031	chr16:84764031:T:A	rs3213810	T	A	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr16	85016760	85016761	chr16:85016761:G:A	rs904813	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr16	85778258	85778259	chr16:85778259:G:A	rs747580746	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr16	86086923	86086924	chr16:86086924:G:A	rs58744742	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	6.305075308533882	CCCGTAAAA
chr16	86262482	86262483	chr16:86262483:A:T	rs11639816	A	T	a	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr16	86262489	86262490	chr16:86262490:G:A	rs11643936	G	A	g	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr16	86368533	86368534	chr16:86368534:C:A	rs9933998	C	A	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr16	86444326	86444327	chr16:86444327:C:G	rs552677221	C	G	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr16	86952424	86952425	chr16:86952425:G:A	rs12711468	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr16	86952428	86952429	chr16:86952429:G:C	rs74037303	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr16	86967146	86967147	chr16:86967147:A:G	rs7196400	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr16	87281568	87281569	chr16:87281569:T:C	rs28758462	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr16	87294990	87294991	chr16:87294991:G:A	rs17770965	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr16	87541977	87541978	chr16:87541978:C:T	rs118085373	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr16	87547171	87547172	chr16:87547172:C:T	rs17699223	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr16	87547197	87547198	chr16:87547198:G:A	rs17771894	G	A	a	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr16	87580918	87580919	chr16:87580919:G:A	rs16943059	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr16	87653609	87653610	chr16:87653610:T:C	rs1110604	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr16	87766041	87766042	chr16:87766042:C:T	chr16:87766042:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr16	87766048	87766049	chr16:87766049:C:T	rs112713109	C	T	C	Hoxd9.mouse_homeodomain_3	8	1	-	7.37702088702296	8.880089539778433	CTCGTAAAG
chr16	87766073	87766074	chr16:87766074:C:A	chr16:87766074:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr16	87896980	87896981	chr16:87896981:G:A	rs59389674	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr16	88049678	88049679	chr16:88049679:C:G	rs6540160	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr16	88058112	88058113	chr16:88058113:T:C	chr16:88058113:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr16	88143975	88143976	chr16:88143976:G:A	rs111426990	G	A	-	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr16	88309990	88309991	chr16:88309991:G:A	rs9938961	G	A	g	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr16	89141998	89141999	chr16:89141999:T:A	rs12917851	T	A	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr16	89390941	89390942	chr16:89390942:C:A	rs2965827	C	A	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr16	89493906	89493907	chr16:89493907:G:C	rs4291902	G	C	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr16	89830425	89830426	chr16:89830426:G:A	rs62054252	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr16	89982914	89982915	chr16:89982915:G:A	rs11648818	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr17	226718	226719	chr17:226719:C:T	rs12939784	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr17	366971	366972	chr17:366972:C:T	rs4366776	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr17	537467	537468	chr17:537468:G:A	rs35320312	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr17	733470	733471	chr17:733471:G:T	rs75710066	G	T	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr17	909250	909251	chr17:909251:T:C	rs9328723	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr17	1041305	1041306	chr17:1041306:G:A	rs16957565	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	7.4756728188075625	6.590532048640095	ATCGTAAAC
chr17	1399793	1399794	chr17:1399794:C:G	rs534666379	C	G	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr17	1399807	1399808	chr17:1399808:C:T	rs35172388	C	T	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr17	1515830	1515831	chr17:1515831:G:C	rs901852905	G	C	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr17	1557717	1557718	chr17:1557718:G:A	rs3785964	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.511874469228912	6.626733699061445	ACCGTAAAA
chr17	1792822	1792823	chr17:1792823:A:G	rs142792880	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	7.511874469228912	3.5338944949106774	ACCGTAAAA
chr17	1940118	1940119	chr17:1940119:A:C	rs180826982	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.589037152396075	4.423130371360901	CTCGTAAAT
chr17	2815058	2815059	chr17:2815059:A:G	rs8071247	A	G	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr17	2815073	2815074	chr17:2815074:T:G	rs11653110	T	G	G	Hoxd9.mouse_homeodomain_3	1	1	+	7.8073383678986845	5.6784204590472465	CTCGTTAAA
chr17	3030594	3030595	chr17:3030595:G:C	rs35348666	G	C	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr17	3511479	3511480	chr17:3511480:T:C	rs4790502	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr17	3647497	3647498	chr17:3647498:C:T	rs144751390	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr17	4295354	4295355	chr17:4295355:A:G	rs4508454	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr17	4562457	4562458	chr17:4562458:T:C	rs71368505	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr17	4655944	4655945	chr17:4655945:G:T	rs111970705	G	T	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr17	4796182	4796183	chr17:4796183:C:T	rs976321409	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr17	5842093	5842094	chr17:5842094:G:A	rs11656550	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr17	6175529	6175530	chr17:6175530:A:T	rs147289784	A	T	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr17	7219242	7219243	chr17:7219243:G:A	rs73976748	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr17	7583705	7583706	chr17:7583706:G:A	rs756160009	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr17	7583712	7583713	chr17:7583713:G:C	rs8070712	G	C	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr17	7583723	7583724	chr17:7583724:G:A	rs551554693	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr17	7641954	7641955	chr17:7641955:C:T	rs183889114	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr17	7886989	7886990	chr17:7886990:C:T	rs566221282	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr17	8139525	8139526	chr17:8139526:G:C	rs187259690	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.176266619256224	6.751171630926995	GGCGTAAAA
chr17	8139536	8139537	chr17:8139537:G:A	rs75234843	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr17	8139541	8139542	chr17:8139542:T:G	rs6416892	T	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr17	9062233	9062234	chr17:9062234:G:A	rs8081823	G	A	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr17	9089796	9089797	chr17:9089797:G:A	rs869055	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr17	9089839	9089840	chr17:9089840:G:A	rs940849	G	A	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr17	9228972	9228973	chr17:9228973:C:T	rs12937065	C	T	-	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr17	9346792	9346793	chr17:9346793:A:G	rs59987625	A	G	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr17	9410487	9410488	chr17:9410488:G:A	rs149497123	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr17	9513000	9513001	chr17:9513001:A:C	rs71369628	A	C	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr17	10295847	10295848	chr17:10295848:C:T	rs17763110	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr17	10927981	10927982	chr17:10927982:G:A	rs9889969	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr17	10956684	10956685	chr17:10956685:A:C	rs56066751	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	4.829041988575794	CTCATAAAA
chr17	10993493	10993494	chr17:10993494:C:T	rs76483870	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr17	10999599	10999600	chr17:10999600:T:C	rs11657226	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	1.1265062080143724	CTCATAAAA
chr17	10999602	10999603	chr17:10999603:A:C	rs8080749	A	C	C	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	5.8130632233164405	CTCATAAAA
chr17	11250237	11250238	chr17:11250238:G:A	rs9889283	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr17	11384339	11384340	chr17:11384340:A:G	rs205054	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr17	12386329	12386330	chr17:12386330:A:G	rs7213911	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr17	13347728	13347729	chr17:13347729:G:T	rs561413565	G	T	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr17	13568765	13568766	chr17:13568766:C:A	rs62053883	C	A	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr17	13690984	13690985	chr17:13690985:C:T	rs72810652	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr17	13940968	13940969	chr17:13940969:A:G	chr17:13940969:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr17	14069590	14069591	chr17:14069591:C:A	chr17:14069591:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr17	14236873	14236874	chr17:14236874:G:A	rs28533558	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	6.906634116835357	5.512794266016282	GCCGTAAAC
chr17	14302389	14302390	chr17:14302390:G:A	rs996202575	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr17	14622974	14622975	chr17:14622975:C:A	rs1272815322	C	A	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr17	14776423	14776424	chr17:14776424:C:G	rs12453061	C	G	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr17	14859708	14859709	chr17:14859709:G:A	rs7218126	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr17	15124985	15124986	chr17:15124986:G:C	rs983292	G	C	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr17	15263667	15263668	chr17:15263668:T:C	rs231016	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr17	15405052	15405053	chr17:15405053:C:T	rs11078295	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr17	15463233	15463234	chr17:15463234:T:G	rs1019092	T	G	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr17	15658719	15658720	chr17:15658720:G:A	rs75150725	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr17	16029312	16029313	chr17:16029313:T:C	rs9890012	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr17	16350634	16350635	chr17:16350635:G:A	rs112339046	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr17	16374461	16374462	chr17:16374462:C:T	rs872300	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr17	16468037	16468038	chr17:16468038:G:T	rs16959738	G	T	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr17	16468042	16468043	chr17:16468043:G:A	rs11655230	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr17	16921730	16921731	chr17:16921731:A:G	rs77869221	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	8.420043757940196	4.44206378362196	GTCATAAAA
chr17	17377172	17377173	chr17:17377173:G:A	rs73981917	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr17	17577159	17577160	chr17:17577160:T:C	rs8070432	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr17	17970845	17970846	chr17:17970846:C:G	rs112501212	C	G	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr17	18867216	18867217	chr17:18867217:A:G	rs2305062	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr17	18867831	18867832	chr17:18867832:G:A	rs9912713	G	A	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr17	19063868	19063869	chr17:19063869:G:A	rs1476759554	G	A	.	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr17	19063869	19063870	chr17:19063870:C:G	rs577577062	C	G	.	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr17	19063895	19063896	chr17:19063896:T:C	rs200684642	T	C	.	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr17	19063902	19063903	chr17:19063903:G:A	rs367870364	G	A	.	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr17	19601607	19601608	chr17:19601608:C:T	rs73981559	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr17	20019050	20019051	chr17:20019051:A:G	rs7211535	A	G	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr17	20196460	20196461	chr17:20196461:G:A	rs528401473	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr17	20481606	20481607	chr17:20481607:G:A	rs1682297	G	A	g	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr17	21326325	21326326	chr17:21326326:C:T	rs112219320	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr17	21504468	21504469	chr17:21504469:T:G	rs12952340	T	G	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr17	21710393	21710394	chr17:21710394:T:G	rs1318476921	T	G	.	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr17	22654772	22654773	chr17:22654773:T:C	rs12941092	T	C	c	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr17	27569640	27569641	chr17:27569641:G:A	rs80338342	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr17	29096364	29096365	chr17:29096365:G:A	rs186728654	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr17	29930524	29930525	chr17:29930525:C:T	rs113950623	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr17	30651149	30651150	chr17:30651150:C:T	rs7210992	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr17	30831962	30831963	chr17:30831963:C:G	rs371531420	C	G	.	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr17	31035712	31035713	chr17:31035713:A:G	rs78727447	A	G	a	Hoxd9.mouse_homeodomain_3	8	1	+	7.8073383678986845	6.304269715143211	CTCGTTAAA
chr17	31197955	31197956	chr17:31197956:C:T	rs2905801	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr17	31435195	31435196	chr17:31435196:T:C	rs733277	T	C	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr17	31561574	31561575	chr17:31561575:A:G	rs75259244	A	G	a	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr17	31628197	31628198	chr17:31628198:G:A	rs997564741	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr17	32970223	32970224	chr17:32970224:C:T	rs114950097	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr17	33234213	33234214	chr17:33234214:T:C	rs115325322	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr17	33717258	33717259	chr17:33717259:A:C	rs7209819	A	C	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr17	33990612	33990613	chr17:33990613:G:A	rs572910868	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr17	34401313	34401314	chr17:34401314:T:C	rs159266	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr17	34987358	34987359	chr17:34987359:C:T	rs3135970	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr17	35256757	35256758	chr17:35256758:A:G	rs143135134	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr17	36120551	36120552	chr17:36120552:C:T	rs8071649	C	T	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr17	36594896	36594897	chr17:36594897:C:T	rs2285639	C	T	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr17	36721250	36721251	chr17:36721251:G:C	rs7342848	G	C	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr17	36826887	36826888	chr17:36826888:C:G	rs11650628	C	G	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr17	37523482	37523483	chr17:37523483:G:C	rs7207076	G	C	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr17	37676423	37676424	chr17:37676424:C:T	rs76481015	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr17	38853839	38853840	chr17:38853840:T:C	chr17:38853840:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr17	38853848	38853849	chr17:38853849:A:G	rs934754222	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr17	38853872	38853873	chr17:38853873:C:A	rs190342740	C	A	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr17	38853876	38853877	chr17:38853877:C:G	rs1124927	C	G	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr17	38870862	38870863	chr17:38870863:C:T	rs546228730	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr17	38980756	38980757	chr17:38980757:A:G	rs144645962	A	G	a	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr17	40012461	40012462	chr17:40012462:C:T	rs7208815	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr17	40606791	40606792	chr17:40606792:C:T	rs114789276	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr17	41044286	41044287	chr17:41044287:A:G	rs76112614	A	G	G	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	7.238869377514717	GTCATAAAA
chr17	42964603	42964604	chr17:42964604:C:G	rs181427070	C	G	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr17	43136825	43136826	chr17:43136826:A:G	rs79345851	A	G	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr17	43671332	43671333	chr17:43671333:G:A	rs72833186	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr17	43935524	43935525	chr17:43935525:T:C	rs1642607	T	C	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr17	43935557	43935558	chr17:43935558:C:T	rs1731893	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr17	43974560	43974561	chr17:43974561:G:T	rs59925105	G	T	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr17	44569147	44569148	chr17:44569148:G:C	rs76677461	G	C	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr17	44581141	44581142	chr17:44581142:A:G	rs72824792	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr17	44681118	44681119	chr17:44681119:C:G	rs148029689	C	G	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr17	45750854	45750855	chr17:45750855:T:A	rs12150604	T	A	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr17	46072170	46072171	chr17:46072171:C:G	rs12150627	C	G	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr17	46110125	46110126	chr17:46110126:A:G	rs17577094	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr17	46148519	46148520	chr17:46148520:G:A	rs1406069	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr17	46206394	46206395	chr17:46206395:A:T	rs2696456	A	T	-	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr17	46227373	46227374	chr17:46227374:A:T	rs57631148	A	T	T	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr17	46736765	46736766	chr17:46736766:T:A	rs6503809	T	A	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr17	47203890	47203891	chr17:47203891:T:G	rs17668126	T	G	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr17	47239655	47239656	chr17:47239656:A:G	rs16941731	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	7.238869377514717	GTCATAAAA
chr17	47275568	47275569	chr17:47275569:C:T	rs8069732	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr17	47999732	47999733	chr17:47999733:A:G	rs17617360	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr17	48584157	48584158	chr17:48584158:T:C	rs2288279	T	C	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr17	48584186	48584187	chr17:48584187:C:T	rs142395873	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr17	48590362	48590363	chr17:48590363:C:T	rs114686333	C	T	.	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr17	48625280	48625281	chr17:48625281:G:A	rs2875820	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr17	48788397	48788398	chr17:48788398:T:C	rs3901705	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr17	49986955	49986956	chr17:49986956:A:G	rs2162278	A	G	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr17	50244254	50244255	chr17:50244255:A:G	rs4289038	A	G	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr17	50244259	50244260	chr17:50244260:T:C	rs76004073	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.124010147682185	1.5084671872383608	GCCGTAAAA
chr17	50920370	50920371	chr17:50920371:C:A	rs7216597	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	7.123298981813135	4.407154527225529	GTCGGAAAA
chr17	51958031	51958032	chr17:51958032:C:T	rs9896830	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr17	55322566	55322567	chr17:55322567:G:A	rs16955862	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr17	56083809	56083810	chr17:56083810:G:T	rs17820956	G	T	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr17	56711388	56711389	chr17:56711389:G:A	rs35043266	G	A	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr17	57349699	57349700	chr17:57349700:A:G	rs792392	A	G	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr17	57528292	57528293	chr17:57528293:A:C	rs962633080	A	C	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.77757273876414	CTCATAAAA
chr17	57803299	57803300	chr17:57803300:C:T	rs2586094	C	T	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr17	58147557	58147558	chr17:58147558:T:C	rs12603162	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	7.238869377514717	GTCATAAAA
chr17	59106143	59106144	chr17:59106144:C:T	chr17:59106144:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr17	59106154	59106155	chr17:59106155:G:A	rs574327103	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.123298981813135	6.2381582116456675	GTCGGAAAA
chr17	59106165	59106166	chr17:59106166:C:A	rs577176326	C	A	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr17	59166124	59166125	chr17:59166125:T:G	rs747480697	T	G	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr17	59559073	59559074	chr17:59559074:A:C	rs72839068	A	C	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr17	61248447	61248448	chr17:61248448:C:T	rs539826225	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr17	61250926	61250927	chr17:61250927:G:T	rs748008780	G	T	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr17	61847500	61847501	chr17:61847501:T:C	rs9908659	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr17	62804810	62804811	chr17:62804811:C:T	rs79117181	C	T	-	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr17	62964658	62964659	chr17:62964659:G:C	rs77444520	G	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr17	63486299	63486300	chr17:63486300:C:A	rs4330	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	5.085971420764582	GTCGTAAAG
chr17	63498275	63498276	chr17:63498276:A:G	rs1055086	A	G	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr17	63906938	63906939	chr17:63906939:C:G	rs12450683	C	G	c	Hoxd9.mouse_homeodomain_3	0	1	+	7.8073383678986845	8.232433356227913	CTCGTTAAA
chr17	64302651	64302652	chr17:64302652:G:T	rs35921608	G	T	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr17	64483155	64483156	chr17:64483156:A:C	rs17650301	A	C	A	Hoxd9.mouse_homeodomain_3	6	1	+	8.420043757940196	4.715114692831453	GTCATAAAA
chr17	64921209	64921210	chr17:64921210:G:T	rs1208431970	G	T	.	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr17	65456699	65456700	chr17:65456700:A:C	rs76112673	A	C	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr17	65556887	65556888	chr17:65556888:C:G	rs62063458	C	G	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr17	65730933	65730934	chr17:65730934:T:C	rs4578695	T	C	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr17	65745526	65745527	chr17:65745527:T:A	rs9652864	T	A	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr17	66167460	66167461	chr17:66167461:G:A	rs1034994	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr17	66193272	66193273	chr17:66193273:C:A	rs117584220	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	3.0900528109233516	GTTGTAAAA
chr17	66301334	66301335	chr17:66301335:T:C	rs3764402	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr17	66529766	66529767	chr17:66529767:G:A	rs16959526	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr17	66581113	66581114	chr17:66581114:T:C	rs73342564	T	C	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr17	66900818	66900819	chr17:66900819:T:C	rs1605443	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr17	66900837	66900838	chr17:66900838:C:T	rs1605444	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	7.802115875352188	7.189980196898917	GTCGTAAAG
chr17	66945260	66945261	chr17:66945261:T:G	rs17713225	T	G	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr17	67243349	67243350	chr17:67243350:G:T	rs72838482	G	T	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr17	67481650	67481651	chr17:67481651:A:C	rs4598946	A	C	a	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr17	67530877	67530878	chr17:67530878:C:T	rs2916131	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr17	67902692	67902693	chr17:67902693:G:A	rs7216064	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr17	68345633	68345634	chr17:68345634:C:G	rs72839309	C	G	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr17	68580384	68580385	chr17:68580385:C:T	rs533820009	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr17	68954544	68954545	chr17:68954545:T:C	rs2041321	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr17	69267407	69267408	chr17:69267408:G:A	rs9907847	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr17	70092363	70092364	chr17:70092364:T:C	rs8077474	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr17	70239783	70239784	chr17:70239784:C:T	rs236597	C	T	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr17	70521288	70521289	chr17:70521289:A:G	rs9916463	A	G	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr17	70969931	70969932	chr17:70969932:G:A	rs2041056	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr17	71111674	71111675	chr17:71111675:A:G	rs8072254	A	G	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr17	71176394	71176395	chr17:71176395:C:T	rs11654068	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr17	71176956	71176957	chr17:71176957:T:C	rs6501447	T	C	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr17	71633528	71633529	chr17:71633529:G:T	chr17:71633529:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr17	71657144	71657145	chr17:71657145:T:A	rs8068027	T	A	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.087808497260832	1.2193659356642375	GTCGTAAAC
chr17	72624503	72624504	chr17:72624504:G:A	rs4793461	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.123298981813135	6.2381582116456675	GTCGGAAAA
chr17	72728035	72728036	chr17:72728036:A:G	rs78522727	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr17	73429653	73429654	chr17:73429654:T:C	rs11650519	T	C	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr17	73642819	73642820	chr17:73642820:C:T	rs34906108	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr17	74172974	74172975	chr17:74172975:C:T	rs1870998	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr17	75131829	75131830	chr17:75131830:C:T	rs543318806	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr17	75131836	75131837	chr17:75131837:C:G	rs529836681	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.087808497260832	1.5276410043566755	GTCGTAAAC
chr17	75131845	75131846	chr17:75131846:G:A	rs188809564	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr17	75131853	75131854	chr17:75131854:G:C	rs192916727	G	C	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr17	75459846	75459847	chr17:75459847:C:A	rs6501805	C	A	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr17	75565237	75565238	chr17:75565238:C:G	rs960512	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	1.0288696594919167	CTCGTAAAT
chr17	75747894	75747895	chr17:75747895:C:T	rs184217836	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	7.026203907121121	GTTGTAAAA
chr17	76506771	76506772	chr17:76506772:G:A	rs7218823	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.802115875352188	6.408276024533114	GTCGTAAAG
chr17	76533475	76533476	chr17:76533476:G:A	rs9902524	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr17	76570959	76570960	chr17:76570960:A:G	rs4789315	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr17	76970400	76970401	chr17:76970401:C:A	rs55740783	C	A	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr17	77524541	77524542	chr17:77524542:C:T	rs11656914	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr17	77610858	77610859	chr17:77610859:G:A	rs189127154	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr17	77690390	77690391	chr17:77690391:G:A	rs59961425	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr17	77690428	77690429	chr17:77690429:A:C	chr17:77690429:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr17	77718275	77718276	chr17:77718276:C:T	rs72891181	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	8.420043757940196	GTCGTAAAA
chr17	77718284	77718285	chr17:77718285:C:T	rs8066427	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr17	78322673	78322674	chr17:78322674:T:G	rs4789024	T	G	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.37702088702296	0.7614779265791366	CTCGTAAAG
chr17	78397893	78397894	chr17:78397894:G:T	rs16971105	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.615367500182583	CTCGTAAAG
chr17	78862776	78862777	chr17:78862777:T:C	rs114372764	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr17	79284835	79284836	chr17:79284836:A:G	rs9892321	A	G	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr17	79393111	79393112	chr17:79393112:A:C	rs1466787886	A	C	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr17	79393113	79393114	chr17:79393114:A:C	rs548383935	A	C	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr17	79800550	79800551	chr17:79800551:A:G	chr17:79800551:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr17	79909544	79909545	chr17:79909545:T:C	rs1285288	T	C	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr17	79987920	79987921	chr17:79987921:G:A	rs145065412	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr17	80261369	80261370	chr17:80261370:C:T	rs1306216556	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr17	80575933	80575934	chr17:80575934:T:C	rs4396581	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr17	80684048	80684049	chr17:80684049:G:A	rs7214361	G	A	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr17	80877151	80877152	chr17:80877152:G:A	rs8068506	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr17	80912139	80912140	chr17:80912140:G:A	rs4969226	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr17	81401153	81401154	chr17:81401154:G:A	rs561270395	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.123298981813135	6.2381582116456675	GTCGGAAAA
chr17	81419834	81419835	chr17:81419835:A:G	rs73363759	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr17	81513750	81513751	chr17:81513751:G:T	chr17:81513751:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr17	81612203	81612204	chr17:81612204:G:A	rs4074915	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr17	82113367	82113368	chr17:82113368:T:C	rs7211808	T	C	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr17	82544485	82544486	chr17:82544486:T:C	rs72861057	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr17	82612551	82612552	chr17:82612552:G:A	rs76141655	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.176266619256224	6.564130940802952	GGCGTAAAA
chr17	82630651	82630652	chr17:82630652:C:T	rs2306754	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	8.014132140725302	7.401996462272032	GTCGTAAAT
chr17	82673644	82673645	chr17:82673645:A:T	rs9893830	A	T	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr17	82949682	82949683	chr17:82949683:C:T	rs8079082	C	T	c	Hoxd9.mouse_homeodomain_3	2	1	+	7.802115875352188	6.408276024533114	GTCGTAAAG
chr17	82949699	82949700	chr17:82949700:C:T	rs73368973	C	T	c	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr17	82965659	82965660	chr17:82965660:C:T	rs4986144	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.8073383678986845	3.411141489862676	CTCGTTAAA
chr17	82965669	82965670	chr17:82965670:G:A	rs75439108	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr18	255551	255552	chr18:255552:G:A	rs500596	G	A	G	Hoxd9.mouse_homeodomain_3	8	1	-	7.662713508931605	7.589037152396075	CTCGTAAAC
chr18	298552	298553	chr18:298553:G:C	rs4121514	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.994948769610968	GTCATAAAA
chr18	443976	443977	chr18:443977:T:C	rs34949137	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.69304884965439	7.511874469228912	ATCGTAAAA
chr18	469034	469035	chr18:469035:G:A	rs73944752	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr18	692770	692771	chr18:692771:T:C	rs988219997	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr18	796756	796757	chr18:796757:T:C	rs3915754	T	C	A	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr18	1351138	1351139	chr18:1351139:T:C	rs149785214	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr18	2656503	2656504	chr18:2656504:C:G	rs111527232	C	G	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr18	2656516	2656517	chr18:2656517:C:T	rs939338460	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr18	2913432	2913433	chr18:2913433:T:C	rs1790994	T	C	t	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr18	3251314	3251315	chr18:3251315:T:A	rs6506089	T	A	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr18	3251318	3251319	chr18:3251319:T:G	rs112835692	T	G	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr18	3261495	3261496	chr18:3261496:T:C	rs73937041	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr18	3261501	3261502	chr18:3261502:G:A	rs986449929	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr18	3524826	3524827	chr18:3524827:G:A	rs16944995	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr18	3605861	3605862	chr18:3605862:C:A	rs555709	C	A	A	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.1449807299949795	GCCGTAAAC
chr18	3684145	3684146	chr18:3684146:T:C	rs424439	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr18	4208322	4208323	chr18:4208323:T:C	rs973450	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr18	4333262	4333263	chr18:4333263:A:G	rs573815	A	G	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr18	4578485	4578486	chr18:4578486:C:T	rs8086530	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr18	4781834	4781835	chr18:4781835:T:G	rs9965179	T	G	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr18	4816096	4816097	chr18:4816097:T:C	rs59789906	T	C	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr18	5285676	5285677	chr18:5285677:G:A	rs56334557	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr18	6540640	6540641	chr18:6540641:T:C	rs7504986	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr18	7566443	7566444	chr18:7566444:A:C	rs73941928	A	C	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr18	8257781	8257782	chr18:8257782:A:G	rs78520459	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.911344677288588	1.0429021156919922	GTTGTAAAA
chr18	8883218	8883219	chr18:8883219:A:T	rs117607420	A	T	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr18	8996772	8996773	chr18:8996773:A:G	rs9947345	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr18	8999234	8999235	chr18:8999235:A:G	rs9956612	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr18	9722244	9722245	chr18:9722245:T:G	rs12956502	T	G	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.994948769610968	1.3794058091671437	CTCATAAAA
chr18	9863664	9863665	chr18:9863665:A:G	rs492681	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr18	9971514	9971515	chr18:9971515:T:G	chr18:9971515:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr18	10026732	10026733	chr18:10026733:G:A	rs9956499	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr18	10066839	10066840	chr18:10066840:T:C	rs16956216	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	+	7.589037152396075	7.662713508931605	CTCGTAAAT
chr18	10284625	10284626	chr18:10284626:C:T	rs12957808	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr18	10284644	10284645	chr18:10284645:G:T	rs1378916988	G	T	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr18	12414223	12414224	chr18:12414224:C:T	rs76851205	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr18	12918318	12918319	chr18:12918319:G:A	rs9916926	G	A	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr18	13404999	13405000	chr18:13405000:G:A	rs552407047	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr18	13522897	13522898	chr18:13522898:G:A	rs78158725	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr18	13999552	13999553	chr18:13999553:G:C	rs8093518	G	C	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr18	15409192	15409193	chr18:15409193:A:G	rs62091000	A	G	.	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr18	22493463	22493464	chr18:22493464:T:C	rs1860942	T	C	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr18	22978603	22978604	chr18:22978604:G:T	rs6507416	G	T	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr18	23457302	23457303	chr18:23457303:G:A	rs75608448	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr18	23499361	23499362	chr18:23499362:C:T	rs540732054	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr18	24661968	24661969	chr18:24661969:C:T	rs1450514	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr18	25075117	25075118	chr18:25075118:C:T	rs36051235	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr18	26181043	26181044	chr18:26181044:G:A	rs4800724	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr18	26488523	26488524	chr18:26488524:C:T	rs116858315	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr18	26920651	26920652	chr18:26920652:T:C	rs232320	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr18	28946470	28946471	chr18:28946471:A:T	rs503773	A	T	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr18	30419918	30419919	chr18:30419919:T:C	rs4473273	T	C	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr18	30419956	30419957	chr18:30419957:C:T	rs62078723	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr18	30573714	30573715	chr18:30573715:T:A	rs1478545	T	A	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr18	31204378	31204379	chr18:31204379:T:C	rs2919999	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr18	31657896	31657897	chr18:31657897:C:T	rs1449087	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr18	33014105	33014106	chr18:33014106:C:G	rs6507002	C	G	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr18	34951900	34951901	chr18:34951901:T:C	rs554859860	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr18	35061536	35061537	chr18:35061537:A:G	rs116179831	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr18	35708050	35708051	chr18:35708051:T:G	rs72891614	T	G	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr18	37579208	37579209	chr18:37579209:A:T	rs1557343	A	T	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.176266619256224	4.013692754345243	GGCGTAAAA
chr18	39836046	39836047	chr18:39836047:G:A	rs72891591	G	A	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr18	40109560	40109561	chr18:40109561:T:C	rs7233432	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr18	40109568	40109569	chr18:40109569:A:G	rs17642617	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr18	40149796	40149797	chr18:40149797:T:G	rs2017653	T	G	T	Hoxd9.mouse_homeodomain_3	6	1	-	8.420043757940196	4.715114692831453	GTCATAAAA
chr18	40149812	40149813	chr18:40149813:A:C	rs4332809	A	C	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr18	40484792	40484793	chr18:40484793:C:T	rs1554945	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr18	40484911	40484912	chr18:40484912:A:G	rs68126049	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr18	41390832	41390833	chr18:41390833:G:A	rs1874517	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr18	41667337	41667338	chr18:41667338:A:G	rs74471881	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr18	43671618	43671619	chr18:43671619:G:A	rs71356419	G	A	g	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr18	43931705	43931706	chr18:43931706:G:A	rs11876994	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr18	44194894	44194895	chr18:44194895:C:A	rs596725	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr18	44603066	44603067	chr18:44603067:T:G	rs146570854	T	G	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr18	44958758	44958759	chr18:44958759:G:A	rs17726928	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr18	45081779	45081780	chr18:45081780:C:T	rs147445580	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr18	45081812	45081813	chr18:45081813:C:A	rs35369144	C	A	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr18	45577317	45577318	chr18:45577318:A:C	rs2705397	A	C	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr18	45909444	45909445	chr18:45909445:G:C	rs9960635	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr18	46324435	46324436	chr18:46324436:G:A	rs79199172	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr18	48669085	48669086	chr18:48669086:C:T	rs299743	C	T	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr18	49491862	49491863	chr18:49491863:C:G	rs890083063	C	G	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr18	49797230	49797231	chr18:49797231:G:C	rs1188497624	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	1.8598762650360374	GTCATAAAA
chr18	51345701	51345702	chr18:51345702:G:A	rs145377967	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr18	51760228	51760229	chr18:51760229:G:A	rs323095	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr18	52532048	52532049	chr18:52532049:G:A	rs182815600	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	7.026203907121121	GTCATAAAA
chr18	52556836	52556837	chr18:52556837:T:A	rs149576231	T	A	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr18	53249920	53249921	chr18:53249921:T:G	rs1078459	T	G	G	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	6.291125849088757	GTCATAAAA
chr18	53654675	53654676	chr18:53654676:C:A	rs34428304	C	A	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr18	54023390	54023391	chr18:54023391:C:G	rs9304457	C	G	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr18	55958747	55958748	chr18:55958748:A:G	rs2588477	A	G	G	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr18	57854936	57854937	chr18:57854937:G:C	rs6566905	G	C	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr18	58138848	58138849	chr18:58138849:A:G	rs61191380	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr18	58196922	58196923	chr18:58196923:G:A	rs113552416	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr18	58577486	58577487	chr18:58577487:T:C	rs7505417	T	C	t	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr18	58996329	58996330	chr18:58996330:C:T	rs11152113	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr18	59665701	59665702	chr18:59665702:G:A	rs142673141	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	6.906634116835357	5.512794266016282	GCCGTAAAC
chr18	60452658	60452659	chr18:60452659:T:A	rs17773982	T	A	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr18	60452668	60452669	chr18:60452669:A:T	rs141841787	A	T	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	1.1265062080143724	CTCATAAAA
chr18	60808598	60808599	chr18:60808599:C:A	rs115299452	C	A	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr18	60808620	60808621	chr18:60808621:G:T	rs182394635	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr18	61473806	61473807	chr18:61473807:G:C	rs9959118	G	C	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr18	61727163	61727164	chr18:61727164:G:C	rs1955068	G	C	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr18	62038514	62038515	chr18:62038515:G:T	rs17069361	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	3.5987518915749583	GTCATAAAA
chr18	63346952	63346953	chr18:63346953:A:C	rs2615196	A	C	C	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	7.202667727093368	GTCATAAAA
chr18	63433301	63433302	chr18:63433302:A:G	rs1355195	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr18	63728324	63728325	chr18:63728325:G:T	rs7228368	G	T	T	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	3.5987518915749583	GTCATAAAA
chr18	63787803	63787804	chr18:63787804:C:T	rs77058004	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr18	65424005	65424006	chr18:65424006:A:G	rs72944975	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr18	66129427	66129428	chr18:66129428:A:T	rs62090385	A	T	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.589037152396075	6.516285980516326	CTCGTAAAT
chr18	66129444	66129445	chr18:66129445:T:C	rs7239107	T	C	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr18	67523755	67523756	chr18:67523756:A:C	rs35267700	A	C	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr18	68820556	68820557	chr18:68820557:G:A	rs684164	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr18	69611422	69611423	chr18:69611423:A:G	rs12326863	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr18	69755178	69755179	chr18:69755179:T:C	rs80246220	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr18	70781734	70781735	chr18:70781735:A:T	rs8099054	A	T	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr18	71030654	71030655	chr18:71030655:C:T	rs113699483	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr18	71450448	71450449	chr18:71450449:C:T	rs77544170	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr18	72444998	72444999	chr18:72444999:A:C	rs12605412	A	C	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr18	72445029	72445030	chr18:72445030:A:C	rs59937487	A	C	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr18	72445031	72445032	chr18:72445032:T:A	rs75261088	T	A	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr18	73767443	73767444	chr18:73767444:T:C	rs7238190	T	C	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr18	73767470	73767471	chr18:73767471:A:G	rs138919337	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr18	74381676	74381677	chr18:74381677:C:T	rs8091329	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	6.906634116835357	6.021493346667889	GCCGTAAAC
chr18	75214155	75214156	chr18:75214156:C:T	rs149591960	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr18	75294085	75294086	chr18:75294086:G:C	rs77227378	G	C	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr18	75915813	75915814	chr18:75915814:G:T	rs750122	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	6.589040073520056	GTCGTAAAA
chr18	76263475	76263476	chr18:76263476:G:A	rs80011937	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr18	76466182	76466183	chr18:76466183:T:G	rs17355696	T	G	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr18	76602462	76602463	chr18:76602463:G:A	rs9950367	G	A	a	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr18	77002184	77002185	chr18:77002185:C:A	rs138633527	C	A	c	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr18	77002185	77002186	chr18:77002186:G:A	rs55755419	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr18	77083909	77083910	chr18:77083910:G:T	rs1789131	G	T	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr18	77126074	77126075	chr18:77126075:G:A	rs12604394	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr18	77127990	77127991	chr18:77127991:T:G	rs141466356	T	G	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr18	77423254	77423255	chr18:77423255:C:A	rs6565967	C	A	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr18	78112725	78112726	chr18:78112726:G:C	rs2411412	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.994948769610968	GTCATAAAA
chr18	79439477	79439478	chr18:79439478:C:T	rs3826567	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr18	79439478	79439479	chr18:79439479:G:A	rs3826568	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr18	79493848	79493849	chr18:79493849:C:T	rs9958536	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr18	79680709	79680710	chr18:79680710:G:C	rs112639986	G	C	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr18	79681928	79681929	chr18:79681929:C:G	rs75691266	C	G	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr18	80144052	80144053	chr18:80144053:C:T	rs58835296	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	7.026203907121121	GTCATAAAA
chr18	80146398	80146399	chr18:80146399:G:C	rs7239992	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	1.1025460160274478	CTCGTAAAC
chr19	267310	267311	chr19:267311:A:G	rs574879536	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr19	267312	267313	chr19:267313:C:T	chr19:267313:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr19	859646	859647	chr19:859647:A:G	rs370546435	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr19	955872	955873	chr19:955873:C:T	rs145845880	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr19	1099069	1099070	chr19:1099070:G:A	rs4806970	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr19	1192491	1192492	chr19:1192492:T:G	rs137949997	T	G	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr19	1192505	1192506	chr19:1192506:G:A	rs7252287	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr19	1302546	1302547	chr19:1302547:G:A	rs907272413	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr19	1489460	1489461	chr19:1489461:C:A	rs791467	C	A	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr19	2067687	2067688	chr19:2067688:G:C	rs117593268	G	C	g	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr19	2699586	2699587	chr19:2699587:T:C	rs10412559	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.232433356227913	7.051258975802436	GTCGTTAAA
chr19	3058022	3058023	chr19:3058023:T:C	rs307717	T	C	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr19	3058055	3058056	chr19:3058056:G:A	rs1058707	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr19	3085047	3085048	chr19:3085048:C:T	rs12979014	C	T	-	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr19	3185707	3185708	chr19:3185708:G:T	rs1037018611	G	T	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr19	3669601	3669602	chr19:3669602:C:T	rs72980700	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr19	3781045	3781046	chr19:3781046:A:G	rs7251543	A	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr19	4246830	4246831	chr19:4246831:A:G	rs75329980	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr19	4247059	4247060	chr19:4247060:G:A	rs1356783610	G	A	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr19	4247096	4247097	chr19:4247097:A:C	chr19:4247097:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr19	5122039	5122040	chr19:5122040:T:C	rs1552046	T	C	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr19	5212470	5212471	chr19:5212471:G:A	rs2230611	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr19	5313463	5313464	chr19:5313464:C:T	rs62115120	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr19	5313488	5313489	chr19:5313489:G:A	rs4807720	G	A	g	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr19	5679944	5679945	chr19:5679945:G:A	rs564168083	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr19	6062499	6062500	chr19:6062500:A:G	rs111354460	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr19	6062521	6062522	chr19:6062522:C:T	rs118134361	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr19	6280461	6280462	chr19:6280462:C:A	rs74854578	C	A	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr19	6670517	6670518	chr19:6670518:G:A	rs3760746	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	6.77757273876414	CTCGTAAAC
chr19	7220584	7220585	chr19:7220585:G:T	rs3890483	G	T	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr19	7321200	7321201	chr19:7321201:G:A	rs972936312	G	A	a	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr19	7597642	7597643	chr19:7597643:T:C	rs1644759	T	C	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr19	7680858	7680859	chr19:7680859:G:A	rs116496345	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr19	7767066	7767067	chr19:7767067:G:T	rs560634	G	T	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr19	7961664	7961665	chr19:7961665:A:G	rs12985234	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr19	8309488	8309489	chr19:8309489:T:C	rs1050516740	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr19	9139945	9139946	chr19:9139946:T:C	rs181757213	T	C	t	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr19	10074330	10074331	chr19:10074331:C:A	rs10409478	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	3.5987518915749583	GTCATAAAA
chr19	10345176	10345177	chr19:10345177:C:A	rs184467641	C	A	-	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr19	11504698	11504699	chr19:11504699:C:G	rs660887	C	G	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr19	11623484	11623485	chr19:11623485:A:G	rs12462302	A	G	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr19	11856956	11856957	chr19:11856957:C:T	rs530823816	C	T	c	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr19	11861830	11861831	chr19:11861831:A:T	rs72994210	A	T	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr19	12552013	12552014	chr19:12552014:T:G	rs77538034	T	G	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.420043757940196	5.254136976905022	GTCATAAAA
chr19	13328196	13328197	chr19:13328197:A:G	rs10404873	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr19	13328200	13328201	chr19:13328201:C:G	rs10404089	C	G	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr19	13820877	13820878	chr19:13820878:C:G	rs345626	C	G	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr19	15374960	15374961	chr19:15374961:G:A	chr19:15374961:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr19	15607932	15607933	chr19:15607933:C:T	rs145272395	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr19	15926548	15926549	chr19:15926549:A:G	rs7249167	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr19	16076812	16076813	chr19:16076813:C:T	rs115683511	C	T	C	Hoxd9.mouse_homeodomain_3	1	1	-	7.176266619256224	6.752249517824526	GGCGTAAAA
chr19	16250003	16250004	chr19:16250004:G:A	rs12610575	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr19	16283455	16283456	chr19:16283456:C:G	rs189048941	C	G	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr19	16334625	16334626	chr19:16334626:T:G	rs61380623	T	G	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr19	16438858	16438859	chr19:16438859:C:T	rs10419156	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr19	16542475	16542476	chr19:16542476:G:A	rs996975809	G	A	g	Hoxd9.mouse_homeodomain_3	1	1	-	6.906634116835357	8.087808497260832	GCCGTAAAC
chr19	16542487	16542488	chr19:16542488:G:A	rs1331641749	G	A	g	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr19	16719766	16719767	chr19:16719767:C:T	rs78846824	C	T	.	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr19	16867685	16867686	chr19:16867686:G:A	rs11669238	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr19	17310297	17310298	chr19:17310298:G:A	rs78139900	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr19	17341414	17341415	chr19:17341415:C:A	rs3745194	C	A	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr19	17827642	17827643	chr19:17827643:A:G	rs28532404	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr19	18323233	18323234	chr19:18323234:A:T	rs972145152	A	T	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr19	18401764	18401765	chr19:18401765:G:A	rs1002640	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	6.906634116835357	6.294498438382084	GCCGTAAAC
chr19	18414293	18414294	chr19:18414294:T:G	rs8111824	T	G	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr19	18604998	18604999	chr19:18604999:C:T	rs2238649	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr19	18743465	18743466	chr19:18743466:C:T	rs79633485	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr19	18743466	18743467	chr19:18743467:G:A	rs575298373	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr19	19206017	19206018	chr19:19206018:G:A	rs113571327	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr19	19714622	19714623	chr19:19714623:C:T	rs112215404	C	T	c	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr19	20660918	20660919	chr19:20660919:T:C	rs78316478	T	C	.	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr19	21603069	21603070	chr19:21603070:C:T	rs576996290	C	T	.	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	7.911344677288588	GTCGTAAAA
chr19	21836532	21836533	chr19:21836533:G:A	rs539050067	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr19	22027761	22027762	chr19:22027762:G:A	rs117934267	G	A	.	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr19	22706780	22706781	chr19:22706781:G:A	rs113787985	G	A	.	Hoxd9.mouse_homeodomain_3	2	1	-	6.620941494926711	5.227101644107637	GCCGTAAAG
chr19	27365931	27365932	chr19:27365932:G:A	rs77170599	G	A	.	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr19	27993932	27993933	chr19:27993933:A:T	rs4805013	A	T	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr19	28393841	28393842	chr19:28393842:G:A	rs10403516	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr19	28507460	28507461	chr19:28507461:G:A	rs9636119	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr19	28817133	28817134	chr19:28817134:G:A	rs5019727	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr19	28864958	28864959	chr19:28864959:T:A	rs17690246	T	A	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr19	29287658	29287659	chr19:29287659:C:T	rs533904451	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr19	29637106	29637107	chr19:29637107:C:A	rs761440643	C	A	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr19	30030108	30030109	chr19:30030109:C:T	rs1422130	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr19	30168538	30168539	chr19:30168539:C:T	rs60886263	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr19	30225634	30225635	chr19:30225635:G:C	rs192317119	G	C	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr19	31268845	31268846	chr19:31268846:C:T	rs764942743	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr19	32050167	32050168	chr19:32050168:T:C	rs7247295	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr19	32652622	32652623	chr19:32652623:A:G	rs148355535	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr19	33187123	33187124	chr19:33187124:C:T	rs59215711	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr19	33214548	33214549	chr19:33214549:A:G	rs12609177	A	G	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr19	33453980	33453981	chr19:33453981:G:A	rs6417177	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr19	33642802	33642803	chr19:33642803:T:C	rs10853928	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr19	33868312	33868313	chr19:33868313:C:A	rs575313403	C	A	c	Hoxd9.mouse_homeodomain_3	2	1	+	8.087808497260832	6.326155110420458	GTCGTAAAC
chr19	34168495	34168496	chr19:34168496:C:T	rs35699082	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr19	34342578	34342579	chr19:34342579:C:G	rs111291722	C	G	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr19	34678505	34678506	chr19:34678506:A:G	rs8111256	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr19	34972690	34972691	chr19:34972691:T:A	rs2546045	T	A	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr19	34992920	34992921	chr19:34992921:T:G	rs6510463	T	G	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr19	35174060	35174061	chr19:35174061:A:G	rs886137	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	1.1265062080143724	CTCATAAAA
chr19	35174063	35174064	chr19:35174064:A:G	rs886138	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr19	35973676	35973677	chr19:35973677:G:A	rs538507316	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr19	36115117	36115118	chr19:36115118:G:A	rs745830410	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr19	36573113	36573114	chr19:36573114:A:G	rs191800145	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr19	36573129	36573130	chr19:36573130:T:C	rs3745779	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr19	37692145	37692146	chr19:37692146:A:G	chr19:37692146:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr19	37699253	37699254	chr19:37699254:A:T	chr19:37699254:A:T	A	T	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr19	38210303	38210304	chr19:38210304:G:C	rs892099	G	C	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.051258975802436	3.895976982751725	GCCGTTAAA
chr19	38601501	38601502	chr19:38601502:C:T	rs35423612	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr19	38652648	38652649	chr19:38652649:G:A	rs13344413	G	A	G	Hoxd9.mouse_homeodomain_3	1	1	-	7.051258975802436	8.232433356227913	GCCGTTAAA
chr19	38661488	38661489	chr19:38661489:C:T	rs114765266	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr19	38684275	38684276	chr19:38684276:G:A	rs77129448	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr19	39018479	39018480	chr19:39018480:C:T	rs631952	C	T	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr19	39018495	39018496	chr19:39018496:C:T	rs12985447	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.4756728188075625	6.081832967988488	ATCGTAAAC
chr19	40070821	40070822	chr19:40070822:T:C	rs337780	T	C	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr19	41023114	41023115	chr19:41023115:G:A	rs7255904	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr19	41263119	41263120	chr19:41263120:A:T	rs3760660	A	T	T	Hoxd9.mouse_homeodomain_3	1	1	-	8.087808497260832	5.534873486977698	GTCGTAAAC
chr19	41597701	41597702	chr19:41597702:C:T	rs4803484	C	T	-	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr19	41810117	41810118	chr19:41810118:G:A	rs113110038	G	A	g	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr19	42202157	42202158	chr19:42202158:G:A	rs16975684	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr19	42456209	42456210	chr19:42456210:C:T	rs16975789	C	T	t	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr19	43042659	43042660	chr19:43042660:A:G	rs149840191	A	G	.	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr19	43127169	43127170	chr19:43127170:C:T	rs10407242	C	T	.	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr19	43362945	43362946	chr19:43362946:G:T	rs28460459	G	T	N	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	6.658390371099818	GTCATAAAA
chr19	43533822	43533823	chr19:43533823:C:T	rs1388111220	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr19	43785860	43785861	chr19:43785861:T:A	rs4803658	T	A	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr19	44051851	44051852	chr19:44051852:G:C	rs531063561	G	C	.	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr19	44051866	44051867	chr19:44051867:G:A	rs116221361	G	A	.	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr19	44448559	44448560	chr19:44448560:G:A	rs139717323	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr19	44848488	44848489	chr19:44848489:A:G	rs1871047	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr19	45295772	45295773	chr19:45295773:C:T	rs887276	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr19	45341391	45341392	chr19:45341392:C:T	rs454421	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr19	45542573	45542574	chr19:45542574:C:T	rs58671202	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr19	45542589	45542590	chr19:45542590:T:C	rs28506127	T	C	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr19	45584975	45584976	chr19:45584976:G:A	rs181991182	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr19	45643010	45643011	chr19:45643011:A:G	rs73050374	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr19	45863947	45863948	chr19:45863948:T:C	rs10412574	T	C	C	Hoxd9.mouse_homeodomain_3	7	1	-	7.698915159352956	0.8304725977563606	CCCGTAAAA
chr19	46278516	46278517	chr19:46278517:C:T	rs10454106	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr19	46466868	46466869	chr19:46466869:C:T	rs60364051	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr19	46614449	46614450	chr19:46614450:C:T	rs551525038	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	7.299208998835316	ATCGTAAAA
chr19	47093844	47093845	chr19:47093845:T:C	rs10408163	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr19	47110868	47110869	chr19:47110869:A:G	rs150755174	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr19	47130503	47130504	chr19:47130504:C:T	rs539146156	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr19	48553987	48553988	chr19:48553988:G:A	rs558941098	G	A	g	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr19	48759242	48759243	chr19:48759243:G:A	rs2548957	G	A	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr19	48793396	48793397	chr19:48793397:C:T	rs684959	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr19	49295761	49295762	chr19:49295762:G:A	rs77534327	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr19	49331561	49331562	chr19:49331562:A:C	rs79228150	A	C	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr19	49331562	49331563	chr19:49331563:T:C	rs188074964	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr19	49568091	49568092	chr19:49568092:G:A	rs143501055	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr19	49874885	49874886	chr19:49874886:T:C	rs11083985	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	6.916975105184722	GTCATAAAA
chr19	49888904	49888905	chr19:49888905:A:G	rs112862536	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr19	50358430	50358431	chr19:50358431:T:C	rs551055514	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.8073383678986845	6.626163987473207	CTCGTTAAA
chr19	50358444	50358445	chr19:50358445:G:A	rs114831977	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr19	52316792	52316793	chr19:52316793:C:T	rs7249338	C	T	T	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr19	52474800	52474801	chr19:52474801:A:C	rs1673902	A	C	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr19	53658219	53658220	chr19:53658220:T:A	rs79218462	T	A	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr19	54023306	54023307	chr19:54023307:T:G	rs574909321	T	G	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.994948769610968	1.3794058091671437	CTCATAAAA
chr19	54464002	54464003	chr19:54464003:C:G	chr19:54464003:C:G	C	G	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr19	54464137	54464138	chr19:54464138:G:T	rs374038754	G	T	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr19	54464140	54464141	chr19:54464141:T:C	rs76692276	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr19	54502610	54502611	chr19:54502611:C:T	rs2042289	C	T	C	Hoxd9.mouse_homeodomain_3	8	1	+	7.015057325381084	6.941380968845554	GTCGTTAAC
chr19	54773455	54773456	chr19:54773456:T:C	rs200839187	T	C	.	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr19	54810141	54810142	chr19:54810142:A:G	rs604999	A	G	.	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr19	55507379	55507380	chr19:55507380:T:C	rs73608772	T	C	c	Hoxd9.mouse_homeodomain_3	7	1	-	7.698915159352956	0.8304725977563606	CCCGTAAAA
chr19	55507396	55507397	chr19:55507397:G:T	rs58024947	G	T	g	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr19	55586898	55586899	chr19:55586899:T:C	rs201749425	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.051258975802436	5.5481903230469625	GCCGTTAAA
chr19	55653931	55653932	chr19:55653932:G:A	rs146922934	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr19	55653958	55653959	chr19:55653959:A:G	chr19:55653959:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr19	56133534	56133535	chr19:56133535:G:A	rs937773820	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr19	57230466	57230467	chr19:57230467:T:A	rs66570840	T	A	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr19	57699406	57699407	chr19:57699407:C:A	rs11881977	C	A	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr19	57699439	57699440	chr19:57699440:G:A	rs11882011	G	A	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr19	57814632	57814633	chr19:57814633:A:G	rs2303817	A	G	.	Hoxd9.mouse_homeodomain_3	7	1	+	6.906634116835357	0.038191555238761	GCCGTAAAC
chr19	57814780	57814781	chr19:57814781:C:T	rs73068539	C	T	.	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr19	57815055	57815056	chr19:57815056:A:G	rs76907963	A	G	.	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr19	57815069	57815070	chr19:57815070:G:A	rs566261235	G	A	.	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr19	57827673	57827674	chr19:57827674:A:G	rs4640288	A	G	.	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	185480	185481	chr2:185481:A:T	rs58341754	A	T	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr2	380766	380767	chr2:380767:A:G	rs11683730	A	G	G	Hoxd9.mouse_homeodomain_3	6	1	+	7.994948769610968	4.016968795292732	CTCATAAAA
chr2	430953	430954	chr2:430954:G:A	rs76494886	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	883959	883960	chr2:883960:T:C	rs79659794	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	1225475	1225476	chr2:1225476:C:T	rs142198139	C	T	a	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr2	1234887	1234888	chr2:1234888:A:G	rs28718216	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.37702088702296	6.195846506597483	CTCGTAAAG
chr2	1631978	1631979	chr2:1631979:T:C	rs78945130	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr2	2264753	2264754	chr2:2264754:C:T	rs12470297	C	T	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr2	2264773	2264774	chr2:2264774:C:T	rs12469455	C	T	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr2	2832577	2832578	chr2:2832578:C:T	rs823234	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr2	3457098	3457099	chr2:3457099:T:C	rs7579428	T	C	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr2	3457117	3457118	chr2:3457118:G:A	rs117295972	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr2	3510938	3510939	chr2:3510939:A:C	rs6605292	A	C	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	3563565	3563566	chr2:3563566:C:G	rs11684290	C	G	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.994948769610968	GTCATAAAA
chr2	3747105	3747106	chr2:3747106:C:T	rs357975	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr2	4055448	4055449	chr2:4055449:C:T	rs17388450	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	4246746	4246747	chr2:4246747:T:G	rs1105752	T	G	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr2	4995002	4995003	chr2:4995003:C:T	rs557964377	C	T	c	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr2	5450741	5450742	chr2:5450742:T:C	rs7602977	T	C	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr2	5756668	5756669	chr2:5756669:G:A	rs73150223	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr2	7027021	7027022	chr2:7027022:C:G	rs416416	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	4.858850147674592	GTCGTAAAT
chr2	7027041	7027042	chr2:7027042:G:A	rs192589545	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr2	7976206	7976207	chr2:7976207:C:T	rs73159406	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr2	8263979	8263980	chr2:8263980:C:A	rs238617	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	5.091193913311079	CTCGTTAAA
chr2	8346983	8346984	chr2:8346984:C:T	rs75560539	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr2	8626037	8626038	chr2:8626038:T:C	rs34736233	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr2	8626061	8626062	chr2:8626062:G:A	rs34320737	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	6.268873658112532	CTCGTAAAC
chr2	8649008	8649009	chr2:8649009:A:G	rs76294282	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	7.238869377514717	GTCATAAAA
chr2	9858837	9858838	chr2:9858838:A:G	rs287997	A	G	A	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	10092579	10092580	chr2:10092580:T:C	rs114981368	T	C	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr2	10385997	10385998	chr2:10385998:G:T	rs11903785	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.3623567608418075	GCCGTAAAA
chr2	10589130	10589131	chr2:10589131:T:C	rs34359340	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr2	10602364	10602365	chr2:10602365:A:C	rs6706542	A	C	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr2	11004263	11004264	chr2:11004264:A:G	rs16857004	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	11021417	11021418	chr2:11021418:A:G	rs11903722	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr2	11156293	11156294	chr2:11156294:A:G	rs7589786	A	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	11363046	11363047	chr2:11363047:G:A	rs10198045	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.014132140725302	6.620292289906229	GTCGTAAAT
chr2	11688503	11688504	chr2:11688504:G:A	rs11889885	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr2	11688526	11688527	chr2:11688527:A:G	rs11884930	A	G	a	Hoxd9.mouse_homeodomain_3	6	1	+	7.698915159352956	3.720935185034721	CCCGTAAAA
chr2	11688530	11688531	chr2:11688531:T:G	rs72773920	T	G	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr2	11777685	11777686	chr2:11777686:T:C	rs78334855	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr2	12046088	12046089	chr2:12046089:A:C	chr2:12046089:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	4.829041988575794	CTCATAAAA
chr2	14793914	14793915	chr2:14793915:G:A	rs2705854	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr2	14901991	14901992	chr2:14901992:T:C	rs55906424	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr2	14902021	14902022	chr2:14902022:G:A	rs56173752	G	A	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr2	15038591	15038592	chr2:15038592:A:G	rs6725024	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr2	15375517	15375518	chr2:15375518:C:T	rs4668444	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr2	15818129	15818130	chr2:15818130:T:C	rs4585001	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr2	16055750	16055751	chr2:16055751:A:G	rs16863226	A	G	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	16660664	16660665	chr2:16660665:G:A	rs809538	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr2	16775981	16775982	chr2:16775982:C:T	rs184030571	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	19009642	19009643	chr2:19009643:C:T	rs34830337	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr2	19277089	19277090	chr2:19277090:T:C	rs851350	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr2	19612342	19612343	chr2:19612343:G:A	rs11696024	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr2	19667937	19667938	chr2:19667938:G:C	rs11096611	G	C	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr2	19675509	19675510	chr2:19675510:G:A	rs72787935	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr2	19749026	19749027	chr2:19749027:G:C	rs4666561	G	C	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr2	19902641	19902642	chr2:19902642:G:A	rs368376932	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr2	20062630	20062631	chr2:20062631:C:T	rs187225233	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr2	20065920	20065921	chr2:20065921:T:A	rs16987338	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr2	20136448	20136449	chr2:20136449:C:T	rs6724651	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr2	20136453	20136454	chr2:20136454:G:C	rs4666361	G	C	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr2	20136475	20136476	chr2:20136476:C:T	rs17652287	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr2	20158594	20158595	chr2:20158595:T:C	rs13009332	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	20425715	20425716	chr2:20425716:T:G	rs79633457	T	G	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr2	20456437	20456438	chr2:20456438:T:C	rs574298096	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr2	21333837	21333838	chr2:21333838:T:G	rs219527	T	G	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr2	23482326	23482327	chr2:23482327:A:C	rs4665217	A	C	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	23637297	23637298	chr2:23637298:G:A	rs2288697	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr2	23637305	23637306	chr2:23637306:G:A	rs7422570	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr2	24047599	24047600	chr2:24047600:C:T	chr2:24047600:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	1	1	+	7.698915159352956	8.880089539778433	CCCGTAAAA
chr2	26086273	26086274	chr2:26086274:G:A	rs934123580	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	26086280	26086281	chr2:26086281:T:C	rs4665820	T	C	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	26193431	26193432	chr2:26193432:A:G	rs7582341	A	G	G	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr2	26284237	26284238	chr2:26284238:A:G	rs111466374	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	26934919	26934920	chr2:26934920:T:C	rs920435	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr2	27885879	27885880	chr2:27885880:A:G	rs66463479	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr2	28287428	28287429	chr2:28287429:G:A	rs76683634	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr2	28865583	28865584	chr2:28865584:G:T	rs11684695	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr2	29317075	29317076	chr2:29317076:C:T	rs13001020	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	29336858	29336859	chr2:29336859:T:C	rs185030464	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr2	29463078	29463079	chr2:29463079:C:T	rs6754936	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr2	29463093	29463094	chr2:29463094:C:T	rs68010618	C	T	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr2	31852792	31852793	chr2:31852793:T:C	rs13022696	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	32962626	32962627	chr2:32962627:A:G	rs72789873	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.880089539778433	7.698915159352956	CTCGTAAAA
chr2	32993286	32993287	chr2:32993287:A:G	rs10204908	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr2	33539649	33539650	chr2:33539650:C:T	rs4286255	C	T	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr2	33976792	33976793	chr2:33976793:A:G	rs2098829	A	G	G	Hoxd9.mouse_homeodomain_3	1	1	-	9.305184528107661	8.124010147682185	GTCGTAAAA
chr2	34242576	34242577	chr2:34242577:A:C	rs73927736	A	C	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr2	34242578	34242579	chr2:34242579:G:A	rs147814841	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr2	34705673	34705674	chr2:34705674:A:G	rs11683426	A	G	a	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr2	34705679	34705680	chr2:34705680:C:T	rs13030159	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr2	34995324	34995325	chr2:34995325:A:T	rs4670105	A	T	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.911344677288588	6.620292289906229	GTTGTAAAA
chr2	35198388	35198389	chr2:35198389:A:T	rs78474195	A	T	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr2	35960516	35960517	chr2:35960517:G:C	rs115416158	G	C	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	36595033	36595034	chr2:36595034:C:T	rs114961022	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr2	36598788	36598789	chr2:36598789:C:G	rs4670570	C	G	g	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr2	36708312	36708313	chr2:36708313:G:A	rs144442427	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	6.703896382228609	CTCGTAAAT
chr2	37168494	37168495	chr2:37168495:G:A	rs6720068	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr2	37262479	37262480	chr2:37262480:C:A	rs3770766	C	A	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr2	37605186	37605187	chr2:37605187:T:G	rs7605481	T	G	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr2	38376426	38376427	chr2:38376427:T:C	rs78308534	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr2	38376464	38376465	chr2:38376465:T:G	rs56257031	T	G	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr2	38454294	38454295	chr2:38454295:T:C	rs67540227	T	C	t	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr2	38454300	38454301	chr2:38454301:G:A	rs75891758	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	38750320	38750321	chr2:38750321:G:A	rs72909144	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr2	38750358	38750359	chr2:38750359:T:C	rs1171809647	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr2	39431495	39431496	chr2:39431496:C:A	rs6758596	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr2	39506483	39506484	chr2:39506484:G:A	rs17466784	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr2	39568279	39568280	chr2:39568280:A:G	rs80253345	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr2	40025486	40025487	chr2:40025487:C:G	rs200444640	C	G	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr2	40159043	40159044	chr2:40159044:T:C	rs10175725	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr2	40563254	40563255	chr2:40563255:T:C	rs6717750	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	41483127	41483128	chr2:41483128:T:A	rs80239490	T	A	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	42061966	42061967	chr2:42061967:C:T	rs4952399	C	T	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr2	42086067	42086068	chr2:42086068:G:A	rs79684646	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr2	42142507	42142508	chr2:42142508:A:C	rs895109380	A	C	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr2	42777917	42777918	chr2:42777918:C:G	rs9941680	C	G	g	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr2	42979795	42979796	chr2:42979796:T:A	rs73923067	T	A	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr2	43032487	43032488	chr2:43032488:G:A	rs1262371440	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	43106743	43106744	chr2:43106744:C:T	rs78178662	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr2	43872293	43872294	chr2:43872294:C:A	rs4148217	C	A	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	5.371664042673228	GTCGTAAAC
chr2	44604813	44604814	chr2:44604814:T:C	rs17390029	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	8.420043757940196	4.44206378362196	GTCATAAAA
chr2	44924017	44924018	chr2:44924018:C:T	rs486389	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr2	44934921	44934922	chr2:44934922:C:T	rs115101817	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr2	45275503	45275504	chr2:45275504:A:G	rs71422153	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr2	45275529	45275530	chr2:45275530:G:A	rs1447098024	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr2	45275544	45275545	chr2:45275545:G:C	rs189267111	G	C	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	45276120	45276121	chr2:45276121:G:A	rs870575	G	A	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr2	45612532	45612533	chr2:45612533:G:A	rs72618613	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	45612533	45612534	chr2:45612534:A:G	rs73927585	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr2	45637438	45637439	chr2:45637439:A:G	rs938662	A	G	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr2	45884775	45884776	chr2:45884776:A:G	rs4952788	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr2	45932889	45932890	chr2:45932890:A:G	rs4267553	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr2	45988438	45988439	chr2:45988439:T:A	rs115184667	T	A	.	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr2	46098659	46098660	chr2:46098660:A:G	rs75254510	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	46225137	46225138	chr2:46225138:G:T	rs4952809	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr2	46387607	46387608	chr2:46387608:C:T	rs11125073	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr2	46557920	46557921	chr2:46557921:G:C	rs72875696	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr2	46749232	46749233	chr2:46749233:C:G	rs144434901	C	G	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	46749236	46749237	chr2:46749237:T:A	rs17822668	T	A	A	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	5.867108747657061	GTCATAAAA
chr2	47274059	47274060	chr2:47274060:G:A	rs74443994	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr2	47369968	47369969	chr2:47369969:G:A	rs78328381	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr2	47403820	47403821	chr2:47403821:C:A	chr2:47403821:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	3.5987518915749583	GTCATAAAA
chr2	47792274	47792275	chr2:47792275:G:A	rs3136288	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr2	48292217	48292218	chr2:48292218:A:G	rs11687708	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr2	48488343	48488344	chr2:48488344:T:C	rs11125173	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	1.1265062080143724	CTCATAAAA
chr2	48806825	48806826	chr2:48806826:A:G	rs4432506	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr2	48853794	48853795	chr2:48853795:G:T	rs56012105	G	T	T	Hoxd9.mouse_homeodomain_3	1	1	-	7.698915159352956	6.327154529495298	CCCGTAAAA
chr2	50066721	50066722	chr2:50066722:A:T	rs10187516	A	T	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	6.163945085190828	CTCATAAAA
chr2	52115664	52115665	chr2:52115665:G:A	rs11125405	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr2	52629867	52629868	chr2:52629868:C:T	rs186103141	C	T	c	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr2	52934556	52934557	chr2:52934557:C:T	rs201418965	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr2	52934575	52934576	chr2:52934576:T:A	rs78036842	T	A	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr2	52934579	52934580	chr2:52934580:T:C	rs17043843	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr2	53366718	53366719	chr2:53366719:T:C	rs10205628	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr2	54372547	54372548	chr2:54372548:A:G	rs7567197	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr2	54422299	54422300	chr2:54422300:C:T	rs138174633	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr2	54546703	54546704	chr2:54546704:T:A	rs9309255	T	A	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	54568791	54568792	chr2:54568792:A:G	rs7602992	A	G	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	54636037	54636038	chr2:54636038:T:C	rs34311770	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr2	54953126	54953127	chr2:54953127:G:A	rs3796008	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr2	55051495	55051496	chr2:55051496:G:A	rs2968789	G	A	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr2	55102416	55102417	chr2:55102417:A:C	rs1223826347	A	C	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr2	55385668	55385669	chr2:55385669:A:G	rs13393046	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr2	55424487	55424488	chr2:55424488:C:T	rs1902060	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	56687327	56687328	chr2:56687328:C:G	rs115720679	C	G	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr2	57232572	57232573	chr2:57232573:G:T	rs114432806	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	4.9827707047653504	CCCGTAAAA
chr2	57516407	57516408	chr2:57516408:A:G	rs11125715	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	6.813774389185489	CTCATAAAA
chr2	57597163	57597164	chr2:57597164:G:C	rs13014264	G	C	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr2	57878596	57878597	chr2:57878597:T:A	rs191724236	T	A	T	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr2	58862493	58862494	chr2:58862494:T:C	rs17049785	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr2	58929601	58929602	chr2:58929602:T:A	rs17619089	T	A	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	60232162	60232163	chr2:60232163:G:A	rs359266	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	60353774	60353775	chr2:60353775:C:T	rs12614158	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	60353801	60353802	chr2:60353802:A:C	rs17027542	A	C	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	5.7824267684371495	GTTGTAAAA
chr2	61252281	61252282	chr2:61252282:C:T	rs13398770	C	T	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	61797058	61797059	chr2:61797059:G:A	rs11125892	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr2	63012617	63012618	chr2:63012618:G:A	rs141575180	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr2	64201512	64201513	chr2:64201513:T:C	rs144212180	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr2	64289315	64289316	chr2:64289316:A:G	rs1559867	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr2	64330679	64330680	chr2:64330680:G:A	rs78824199	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	64334545	64334546	chr2:64334546:A:C	rs1426704	A	C	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr2	64391249	64391250	chr2:64391250:G:A	rs7597890	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr2	64391254	64391255	chr2:64391255:C:T	rs7597696	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	64632983	64632984	chr2:64632984:C:A	chr2:64632984:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	64632983	64632984	chr2:64632984:C:T	rs147407983	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	64840607	64840608	chr2:64840608:C:T	rs78680570	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	7.299208998835316	ATCGTAAAA
chr2	64992574	64992575	chr2:64992575:C:G	rs2268480	C	G	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr2	64992575	64992576	chr2:64992576:A:G	rs2268479	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr2	65018355	65018356	chr2:65018356:G:A	rs964337842	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr2	65030773	65030774	chr2:65030774:C:T	rs115958852	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr2	65128744	65128745	chr2:65128745:G:T	rs7568994	G	T	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr2	65163148	65163149	chr2:65163149:C:T	rs12470270	C	T	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	65489481	65489482	chr2:65489482:A:G	rs840947	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr2	65950146	65950147	chr2:65950147:G:A	rs115468098	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr2	65991596	65991597	chr2:65991597:C:G	rs141086484	C	G	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr2	66171693	66171694	chr2:66171694:C:T	rs13427355	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr2	66782120	66782121	chr2:66782121:C:T	rs113152425	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr2	66994728	66994729	chr2:66994729:T:A	rs34039401	T	A	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr2	67075610	67075611	chr2:67075611:A:G	rs17032980	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr2	67084036	67084037	chr2:67084037:G:T	rs752939	G	T	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr2	67464115	67464116	chr2:67464116:G:A	rs538290500	G	A	g	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	68889740	68889741	chr2:68889741:G:T	rs182168245	G	T	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr2	69712708	69712709	chr2:69712709:G:A	rs2312547	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr2	69768447	69768448	chr2:69768448:A:G	rs9309429	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr2	69863446	69863447	chr2:69863447:C:G	rs13017134	C	G	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr2	69911868	69911869	chr2:69911869:A:G	rs6546556	A	G	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr2	70086140	70086141	chr2:70086141:G:A	rs115947091	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr2	70371255	70371256	chr2:70371256:T:C	rs72485356	T	C	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr2	71492101	71492102	chr2:71492102:T:C	rs79606529	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	73680183	73680184	chr2:73680184:A:C	rs11679042	A	C	a	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr2	73680200	73680201	chr2:73680201:G:A	rs4488685	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.983181036203886	CTCGTAAAG
chr2	73827215	73827216	chr2:73827216:T:G	rs182934372	T	G	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	73908029	73908030	chr2:73908030:C:T	rs115169864	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr2	74177555	74177556	chr2:74177556:A:G	rs7567033	A	G	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr2	75065233	75065234	chr2:75065234:C:A	rs78255518	C	A	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr2	75180967	75180968	chr2:75180968:C:T	rs72920676	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr2	75315625	75315626	chr2:75315626:T:A	rs7596918	T	A	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr2	75548068	75548069	chr2:75548069:T:G	rs11899583	T	G	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr2	75712654	75712655	chr2:75712655:C:T	rs112846031	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr2	76282611	76282612	chr2:76282612:A:G	rs1526624	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	76394181	76394182	chr2:76394182:G:A	rs75353998	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr2	76714343	76714344	chr2:76714344:C:G	rs62170414	C	G	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr2	76978155	76978156	chr2:76978156:T:A	rs1446713	T	A	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr2	78077668	78077669	chr2:78077669:T:G	rs11126651	T	G	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	78209531	78209532	chr2:78209532:T:C	rs72927675	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr2	78700201	78700202	chr2:78700202:T:C	rs1669754	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	80067722	80067723	chr2:80067723:G:A	rs138705089	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	80476510	80476511	chr2:80476511:G:C	rs11126768	G	C	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	81436254	81436255	chr2:81436255:C:T	rs12477384	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	81436260	81436261	chr2:81436261:A:G	rs11126810	A	G	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr2	82879378	82879379	chr2:82879379:C:G	rs2111350	C	G	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr2	82937792	82937793	chr2:82937793:G:A	rs11899089	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr2	83536731	83536732	chr2:83536732:G:A	rs993735	G	A	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr2	83546937	83546938	chr2:83546938:C:A	rs113527045	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr2	83827795	83827796	chr2:83827796:T:C	rs4832333	T	C	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr2	83827807	83827808	chr2:83827808:A:G	rs4832334	A	G	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	83991166	83991167	chr2:83991167:A:T	rs763866	A	T	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr2	85156561	85156562	chr2:85156562:T:C	rs116250443	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr2	85511292	85511293	chr2:85511293:T:C	rs72938587	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr2	85595629	85595630	chr2:85595630:G:A	rs564795216	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr2	85851835	85851836	chr2:85851836:A:T	rs951026197	A	T	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr2	86338512	86338513	chr2:86338513:G:T	rs72844651	G	T	g	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr2	86338524	86338525	chr2:86338525:T:G	rs6704964	T	G	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr2	86338543	86338544	chr2:86338544:C:T	rs113680499	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr2	86348241	86348242	chr2:86348242:C:A	rs74669901	C	A	A	Hoxd9.mouse_homeodomain_3	0	1	-	7.802115875352188	2.980824008986951	GTCGTAAAG
chr2	86393856	86393857	chr2:86393857:A:C	rs76170745	A	C	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr2	86634132	86634133	chr2:86634133:A:G	rs61357918	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr2	88504096	88504097	chr2:88504097:A:G	rs12611455	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr2	90042609	90042610	chr2:90042610:G:T	rs113764684	G	T	.	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	90360378	90360379	chr2:90360379:C:T	rs71259223	C	T	c	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr2	90360568	90360569	chr2:90360569:C:G	rs796992165	C	G	c	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	91442321	91442322	chr2:91442322:C:T	rs1216989255	C	T	c	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr2	95875946	95875947	chr2:95875947:C:T	rs12053473	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr2	96791276	96791277	chr2:96791277:G:T	rs62152781	G	T	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr2	97711411	97711412	chr2:97711412:A:G	rs17695937	A	G	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.911344677288588	9.305184528107661	GTTGTAAAA
chr2	98917649	98917650	chr2:98917650:A:T	rs6419564	A	T	a	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	99155259	99155260	chr2:99155260:A:C	rs557695744	A	C	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr2	99155266	99155267	chr2:99155267:A:G	chr2:99155267:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr2	99155289	99155290	chr2:99155290:T:G	rs11902847	T	G	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr2	100019200	100019201	chr2:100019201:A:T	rs10198062	A	T	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr2	100447086	100447087	chr2:100447087:A:G	rs750562	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr2	100891981	100891982	chr2:100891982:A:G	rs72627426	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	100892000	100892001	chr2:100892001:C:G	rs6721366	C	G	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr2	101400638	101400639	chr2:101400639:C:T	rs4241206	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr2	101559837	101559838	chr2:101559838:A:T	rs80325293	A	T	A	Hoxd9.mouse_homeodomain_3	6	1	+	9.305184528107661	6.4894746942295125	GTCGTAAAA
chr2	101570565	101570566	chr2:101570566:G:C	rs10181263	G	C	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr2	101615251	101615252	chr2:101615252:G:T	rs17025851	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.232433356227913	6.470779969387537	GTCGTTAAA
chr2	101622897	101622898	chr2:101622898:T:C	rs115027337	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	1.8045007974963716	GTCATAAAA
chr2	101622900	101622901	chr2:101622901:G:A	rs17025894	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	7.026203907121121	GTCATAAAA
chr2	102056227	102056228	chr2:102056228:G:A	rs4851537	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr2	102193399	102193400	chr2:102193400:G:T	rs10166535	G	T	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr2	102472617	102472618	chr2:102472618:G:C	rs10201184	G	C	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr2	102656497	102656498	chr2:102656498:G:A	rs10178585	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr2	104412612	104412613	chr2:104412613:C:A	rs77158994	C	A	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr2	105143622	105143623	chr2:105143623:T:C	rs1022745546	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	105271834	105271835	chr2:105271835:C:T	rs6736782	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	105384015	105384016	chr2:105384016:C:T	rs34478379	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr2	105475759	105475760	chr2:105475760:T:G	rs1401209	T	G	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr2	106183073	106183074	chr2:106183074:C:G	rs2167536	C	G	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	4.507431515880895	CTCGTAAAC
chr2	107026228	107026229	chr2:107026229:T:C	rs116456396	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr2	107151985	107151986	chr2:107151986:C:T	rs4300823	C	T	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr2	107151986	107151987	chr2:107151987:C:G	rs11683370	C	G	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	108367626	108367627	chr2:108367627:A:G	rs116694907	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr2	108541780	108541781	chr2:108541781:A:G	rs2718740	A	G	a	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	108618007	108618008	chr2:108618008:G:A	rs79570546	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	108895308	108895309	chr2:108895309:A:G	rs10865025	A	G	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.911344677288588	9.305184528107661	GTTGTAAAA
chr2	108982799	108982800	chr2:108982800:G:A	rs260674	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr2	109623994	109623995	chr2:109623995:T:C	rs10496434	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr2	110737983	110737984	chr2:110737984:G:C	rs59413237	G	C	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr2	111168548	111168549	chr2:111168549:T:G	rs138660090	T	G	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr2	111666170	111666171	chr2:111666171:T:A	rs17039768	T	A	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr2	111701356	111701357	chr2:111701357:G:A	rs3898028	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr2	112795848	112795849	chr2:112795849:A:G	rs6746923	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr2	113584980	113584981	chr2:113584981:G:C	rs148365477	G	C	g	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr2	113726722	113726723	chr2:113726723:T:C	rs11676758	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr2	115503504	115503505	chr2:115503505:C:T	rs2166906	C	T	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr2	115616305	115616306	chr2:115616306:T:C	rs4849413	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr2	116136358	116136359	chr2:116136359:C:T	rs62157609	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr2	116136371	116136372	chr2:116136372:C:T	rs75756505	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr2	116265224	116265225	chr2:116265225:C:T	rs36113824	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr2	117774972	117774973	chr2:117774973:G:A	rs72832398	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr2	118062278	118062279	chr2:118062279:G:T	rs1541714	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr2	118090264	118090265	chr2:118090265:G:A	rs1352083	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr2	118169378	118169379	chr2:118169379:G:A	rs13025020	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr2	118224701	118224702	chr2:118224702:G:T	rs77883434	G	T	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr2	119463744	119463745	chr2:119463745:A:T	rs2253878	A	T	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr2	119463904	119463905	chr2:119463905:T:A	rs2253872	T	A	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr2	120390168	120390169	chr2:120390169:T:C	rs72960844	T	C	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr2	120546468	120546469	chr2:120546469:G:A	rs147484599	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr2	120614300	120614301	chr2:120614301:A:G	rs11886111	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr2	120935858	120935859	chr2:120935859:G:A	rs143087388	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	121175275	121175276	chr2:121175276:C:T	rs145726668	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	121648214	121648215	chr2:121648215:A:G	chr2:121648215:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr2	122683095	122683096	chr2:122683096:G:C	rs10496594	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr2	123074329	123074330	chr2:123074330:T:C	rs1605496	T	C	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	123433775	123433776	chr2:123433776:C:T	rs12473203	C	T	G	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	7.911344677288588	GTCGTAAAA
chr2	123434177	123434178	chr2:123434178:T:C	rs2419741	T	C	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr2	123434191	123434192	chr2:123434192:T:A	rs2900971	T	A	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr2	124060902	124060903	chr2:124060903:A:G	rs17010800	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	124832750	124832751	chr2:124832751:G:A	rs56171708	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	6.906634116835357	6.021493346667889	GCCGTAAAC
chr2	125037858	125037859	chr2:125037859:C:A	rs67039186	C	A	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr2	126645256	126645257	chr2:126645257:A:G	rs6431169	A	G	G	Hoxd9.mouse_homeodomain_3	4	1	-	7.37702088702296	4.21444702211198	CTCGTAAAG
chr2	126662041	126662042	chr2:126662042:T:A	rs28369973	T	A	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr2	127226844	127226845	chr2:127226845:G:T	rs988620545	G	T	G	Hoxd9.mouse_homeodomain_3	3	1	+	6.906634116835357	4.19048966224775	GCCGTAAAC
chr2	127226867	127226868	chr2:127226868:G:A	rs139616291	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr2	127423941	127423942	chr2:127423942:T:C	rs971207	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr2	127618582	127618583	chr2:127618583:T:C	rs551657566	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr2	127618599	127618600	chr2:127618600:T:C	rs12052293	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	128164420	128164421	chr2:128164421:C:G	rs2122115	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr2	128197129	128197130	chr2:128197130:A:C	rs12997205	A	C	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr2	128246599	128246600	chr2:128246600:C:T	rs7607077	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr2	128735884	128735885	chr2:128735885:T:C	rs10496671	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr2	131034570	131034571	chr2:131034571:A:G	rs2059420	A	G	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr2	131152273	131152274	chr2:131152274:C:T	rs114043933	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr2	131152289	131152290	chr2:131152290:T:G	rs548104857	T	G	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.087808497260832	1.47226553681701	GTCGTAAAC
chr2	133486780	133486781	chr2:133486781:T:G	rs79009675	T	G	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	133727149	133727150	chr2:133727150:A:C	chr2:133727150:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr2	133733649	133733650	chr2:133733650:C:T	rs1562348	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr2	133880990	133880991	chr2:133880991:G:A	rs6739477	G	A	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr2	134131809	134131810	chr2:134131810:T:C	rs187681794	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr2	134319960	134319961	chr2:134319961:C:T	rs17783122	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr2	134352975	134352976	chr2:134352976:C:G	rs62168460	C	G	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	134444523	134444524	chr2:134444524:C:T	rs60373617	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr2	134724272	134724273	chr2:134724273:A:G	rs4953928	A	G	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr2	135337044	135337045	chr2:135337045:C:T	rs6742244	C	T	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr2	135601136	135601137	chr2:135601137:A:C	rs72988453	A	C	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr2	136025442	136025443	chr2:136025443:C:A	rs537031051	C	A	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr2	136056532	136056533	chr2:136056533:C:T	rs115711565	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	136056538	136056539	chr2:136056539:G:A	rs1533649	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr2	136311320	136311321	chr2:136311321:T:C	rs78481513	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr2	137946492	137946493	chr2:137946493:C:G	rs3113210	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr2	138422099	138422100	chr2:138422100:C:T	rs75414054	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr2	138787291	138787292	chr2:138787292:G:A	rs183909417	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr2	138919752	138919753	chr2:138919753:A:C	rs6757538	A	C	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr2	139438699	139438700	chr2:139438700:C:G	rs10168172	C	G	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr2	140181392	140181393	chr2:140181393:C:T	rs79863418	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr2	141320656	141320657	chr2:141320657:C:T	rs16855038	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr2	141468959	141468960	chr2:141468960:G:A	rs1044693438	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr2	141822423	141822424	chr2:141822424:C:T	rs76620660	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	6.195197301577001	CTCGTAAAT
chr2	142419914	142419915	chr2:142419915:G:A	rs4327191	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	144030987	144030988	chr2:144030988:G:A	rs79179521	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr2	144925146	144925147	chr2:144925147:G:A	rs786223	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	145038683	145038684	chr2:145038684:G:A	rs7575637	G	A	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr2	145279995	145279996	chr2:145279996:T:C	rs895219	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr2	146326106	146326107	chr2:146326107:G:A	rs4662459	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr2	146403006	146403007	chr2:146403007:G:A	rs10166523	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr2	146986243	146986244	chr2:146986244:C:T	rs116581888	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr2	147984051	147984052	chr2:147984052:C:T	rs13004041	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	148583114	148583115	chr2:148583115:A:G	rs4972285	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	149167772	149167773	chr2:149167773:G:A	rs114438199	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr2	149167797	149167798	chr2:149167798:G:T	rs55714304	G	T	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	150095722	150095723	chr2:150095723:T:C	rs330639	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	150131396	150131397	chr2:150131397:A:G	rs330608	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr2	150975127	150975128	chr2:150975128:G:A	rs13001965	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr2	151270088	151270089	chr2:151270089:T:C	rs453226	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr2	151374434	151374435	chr2:151374435:A:T	rs6715069	A	T	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr2	152201590	152201591	chr2:152201591:C:T	rs56018021	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr2	152437919	152437920	chr2:152437920:A:G	rs4664108	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	153077499	153077500	chr2:153077500:C:G	rs13398106	C	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	153375972	153375973	chr2:153375973:A:G	rs1438089	A	G	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr2	153664800	153664801	chr2:153664801:T:C	rs6414149	T	C	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	154447402	154447403	chr2:154447403:C:T	rs707074	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr2	155149478	155149479	chr2:155149479:C:T	rs6724928	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	7.176266619256224	6.564130940802952	GGCGTAAAA
chr2	155149480	155149481	chr2:155149481:G:A	rs10184990	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr2	155965792	155965793	chr2:155965793:C:G	rs35487612	C	G	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr2	156321103	156321104	chr2:156321104:G:C	rs1150143	G	C	C	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	0.8168533941188024	CTCGTAAAG
chr2	158138470	158138471	chr2:158138471:T:C	rs79288256	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr2	158138477	158138478	chr2:158138478:G:A	rs16842635	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr2	158823717	158823718	chr2:158823718:G:A	rs10196949	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr2	159119051	159119052	chr2:159119052:A:G	rs75333936	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	159250675	159250676	chr2:159250676:G:A	rs16843822	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	6.268873658112532	CTCGTAAAC
chr2	160358345	160358346	chr2:160358346:G:A	rs10929979	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.69304884965439	7.299208998835316	ATCGTAAAA
chr2	160453355	160453356	chr2:160453356:G:C	rs12472445	G	C	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr2	161031900	161031901	chr2:161031901:C:G	rs2859653	C	G	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr2	161123370	161123371	chr2:161123371:C:T	rs1267082	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr2	161135146	161135147	chr2:161135147:G:A	rs3754978	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.014132140725302	6.620292289906229	GTCGTAAAT
chr2	162260674	162260675	chr2:162260675:G:T	rs17713557	G	T	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr2	163467026	163467027	chr2:163467027:C:A	rs116632516	C	A	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	163543160	163543161	chr2:163543161:G:A	rs13033669	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr2	163600128	163600129	chr2:163600129:C:T	rs16848690	C	T	c	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	163877562	163877563	chr2:163877563:C:T	rs930726465	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	7.911344677288588	GTCGTAAAA
chr2	165401526	165401527	chr2:165401527:T:G	chr2:165401527:T:G	T	G	-	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr2	165655569	165655570	chr2:165655570:T:C	rs79556258	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr2	165655573	165655574	chr2:165655574:A:G	rs6432840	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr2	165803551	165803552	chr2:165803552:A:G	rs11694833	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.911344677288588	1.0429021156919922	GTTGTAAAA
chr2	166186376	166186377	chr2:166186377:G:A	rs7563811	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	-	8.880089539778433	4.483892661742424	CTCGTAAAA
chr2	166350656	166350657	chr2:166350657:T:C	rs13004690	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr2	166375301	166375302	chr2:166375302:C:A	rs141453198	C	A	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr2	166410580	166410581	chr2:166410581:A:G	rs17767964	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr2	166410620	166410621	chr2:166410621:G:C	rs13027893	G	C	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr2	166464550	166464551	chr2:166464551:C:T	rs4476366	C	T	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr2	167135647	167135648	chr2:167135648:T:C	rs75567048	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	1.1265062080143724	CTCATAAAA
chr2	167784008	167784009	chr2:167784009:G:A	rs1965906	G	A	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr2	168358766	168358767	chr2:168358767:G:A	rs7562239	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr2	168693310	168693311	chr2:168693311:A:G	rs62174420	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr2	168920786	168920787	chr2:168920787:A:G	rs78529720	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.911344677288588	1.0429021156919922	GTTGTAAAA
chr2	169361780	169361781	chr2:169361781:C:G	rs147614850	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	1.0288696594919167	CTCGTAAAT
chr2	169748434	169748435	chr2:169748435:G:C	rs80320994	G	C	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr2	170329977	170329978	chr2:170329978:G:T	rs7589067	G	T	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr2	170377724	170377725	chr2:170377725:C:G	rs4668251	C	G	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	8.420043757940196	CTCATAAAA
chr2	170733713	170733714	chr2:170733714:T:A	rs6433240	T	A	A	Hoxd9.mouse_homeodomain_3	4	1	+	7.911344677288588	4.748770812377607	GTTGTAAAA
chr2	170745623	170745624	chr2:170745624:C:T	rs10184230	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	7.911344677288588	GTCGTAAAA
chr2	170815931	170815932	chr2:170815932:C:T	rs190849740	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr2	171811459	171811460	chr2:171811460:G:A	rs1430970593	G	A	g	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	172197584	172197585	chr2:172197585:T:A	rs9287951	T	A	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr2	172301043	172301044	chr2:172301044:A:G	rs10930545	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	172336475	172336476	chr2:172336476:C:T	rs10209443	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr2	172594359	172594360	chr2:172594360:G:T	rs35665064	G	T	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	173050046	173050047	chr2:173050047:T:C	rs3769210	T	C	C	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.016968795292732	CTCATAAAA
chr2	173150439	173150440	chr2:173150440:G:A	rs7575189	G	A	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr2	173357158	173357159	chr2:173357159:G:A	rs2117131	G	A	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr2	173544910	173544911	chr2:173544911:G:A	rs143937792	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr2	173614511	173614512	chr2:173614512:T:C	rs1123849	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr2	173943487	173943488	chr2:173943488:C:T	rs4972622	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	174094854	174094855	chr2:174094855:A:C	rs67712092	A	C	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	5.866030860759529	CTCATAAAA
chr2	174118275	174118276	chr2:174118276:G:A	rs16862397	G	A	g	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr2	174121350	174121351	chr2:174121351:G:T	rs189670661	G	T	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	174234721	174234722	chr2:174234722:G:A	chr2:174234722:G:A	G	A	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr2	174234721	174234722	chr2:174234722:G:T	rs2099726	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	4.660876432435354	CTCGTAAAG
chr2	174608110	174608111	chr2:174608111:C:T	rs13024657	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.232433356227913	7.620297677774641	GTCGTTAAA
chr2	174750910	174750911	chr2:174750911:C:A	rs33954615	C	A	c	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr2	174750924	174750925	chr2:174750925:T:C	rs2646198	T	C	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr2	175373561	175373562	chr2:175373562:G:A	rs4332890	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr2	175455434	175455435	chr2:175455435:C:T	rs2461748	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.802115875352188	6.408276024533114	GTCGTAAAG
chr2	175823419	175823420	chr2:175823420:T:G	rs114404592	T	G	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	176068607	176068608	chr2:176068608:C:A	rs929534677	C	A	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr2	176112143	176112144	chr2:176112144:A:G	rs2551808	A	G	G	Hoxd9.mouse_homeodomain_3	5	1	+	7.911344677288588	1.2958017168447644	GTTGTAAAA
chr2	176112144	176112145	chr2:176112145:A:G	rs2551809	A	G	G	Hoxd9.mouse_homeodomain_3	6	1	+	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr2	176130787	176130788	chr2:176130788:A:G	chr2:176130788:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr2	176663144	176663145	chr2:176663145:G:A	rs1562608	G	A	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr2	176765759	176765760	chr2:176765760:T:C	rs72931457	T	C	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	176814510	176814511	chr2:176814511:T:C	rs112038177	T	C	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr2	177213486	177213487	chr2:177213487:G:A	rs4383369	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	178322310	178322311	chr2:178322311:C:T	rs73032547	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	179429718	179429719	chr2:179429719:T:C	chr2:179429719:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr2	179893828	179893829	chr2:179893829:A:G	rs1327732391	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	180307426	180307427	chr2:180307427:A:G	rs12693237	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr2	181689479	181689480	chr2:181689480:C:G	rs16867471	C	G	c	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	181811606	181811607	chr2:181811607:G:A	rs10201303	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr2	182132476	182132477	chr2:182132477:A:T	rs1432528	A	T	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr2	184153712	184153713	chr2:184153713:T:C	rs148803221	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr2	184153750	184153751	chr2:184153751:C:T	rs4355073	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr2	186541409	186541410	chr2:186541410:G:C	rs142368592	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr2	187150839	187150840	chr2:187150840:A:G	rs148111862	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr2	187198581	187198582	chr2:187198582:G:T	rs11902984	G	T	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr2	187552499	187552500	chr2:187552500:G:T	rs10185334	G	T	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr2	187583028	187583029	chr2:187583029:C:T	rs10187989	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr2	188070142	188070143	chr2:188070143:A:G	rs11691997	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.176266619256224	0.3078240576596286	GGCGTAAAA
chr2	188248264	188248265	chr2:188248265:A:G	rs76427030	A	G	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.69304884965439	9.305184528107661	ATCGTAAAA
chr2	188566544	188566545	chr2:188566545:C:T	rs957966321	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr2	188974393	188974394	chr2:188974394:C:T	rs941498756	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	189265784	189265785	chr2:189265785:G:A	rs4667274	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr2	189379414	189379415	chr2:189379415:T:A	rs916660165	T	A	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr2	190361055	190361056	chr2:190361056:A:G	rs2067412	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr2	190760382	190760383	chr2:190760383:G:T	rs189170776	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr2	190863677	190863678	chr2:190863678:T:G	rs2355575	T	G	G	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr2	191103693	191103694	chr2:191103694:T:G	rs13407419	T	G	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr2	191243881	191243882	chr2:191243882:C:T	rs35092718	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr2	191628269	191628270	chr2:191628270:T:C	rs5001763	T	C	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr2	191869347	191869348	chr2:191869348:C:G	rs142648976	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	0.8168533941188024	CTCGTAAAG
chr2	192439914	192439915	chr2:192439915:G:A	rs1471773	G	A	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr2	194303009	194303010	chr2:194303010:G:A	rs6708813	G	A	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr2	195546834	195546835	chr2:195546835:A:C	rs59017643	A	C	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr2	195576429	195576430	chr2:195576430:C:T	rs17793657	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr2	195576433	195576434	chr2:195576434:A:G	rs544756498	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr2	196151526	196151527	chr2:196151527:A:G	rs4850384	A	G	a	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr2	196307813	196307814	chr2:196307814:G:A	rs2305566	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr2	196980724	196980725	chr2:196980725:A:G	rs6735887	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr2	197212300	197212301	chr2:197212301:G:A	rs1406222	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr2	199955775	199955776	chr2:199955776:C:A	rs192902107	C	A	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr2	199955781	199955782	chr2:199955782:T:G	rs281766	T	G	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	199978117	199978118	chr2:199978118:C:T	rs115710895	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr2	200857432	200857433	chr2:200857433:A:G	rs12988180	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	201630756	201630757	chr2:201630757:T:C	rs1209409	T	C	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr2	201654744	201654745	chr2:201654745:T:A	rs75408533	T	A	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.911344677288588	5.095634843410439	GTTGTAAAA
chr2	201867071	201867072	chr2:201867072:A:G	rs10192903	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	201940903	201940904	chr2:201940904:G:A	rs115108236	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr2	202084441	202084442	chr2:202084442:T:C	rs7597172	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr2	202919478	202919479	chr2:202919479:A:G	rs17406900	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr2	203722545	203722546	chr2:203722546:C:A	rs10515944	C	A	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr2	204086544	204086545	chr2:204086545:G:A	rs961738	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr2	204293514	204293515	chr2:204293515:C:T	rs80222995	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr2	204453776	204453777	chr2:204453777:C:A	rs10084407	C	A	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	204483583	204483584	chr2:204483584:C:A	rs72926244	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	7.807908079486923	CTCATAAAA
chr2	205170709	205170710	chr2:205170710:T:C	rs12694018	T	C	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr2	205560341	205560342	chr2:205560342:C:T	rs2192933	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr2	205679577	205679578	chr2:205679578:C:T	rs1517527	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr2	205813676	205813677	chr2:205813677:T:C	rs565667421	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr2	207073983	207073984	chr2:207073984:A:G	chr2:207073984:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	207973203	207973204	chr2:207973204:T:A	rs74836333	T	A	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	208607856	208607857	chr2:208607857:A:G	rs12694115	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr2	209717960	209717961	chr2:209717961:G:A	rs76988310	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr2	210460169	210460170	chr2:210460170:C:T	rs12151505	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	8.420043757940196	GTCGTAAAA
chr2	210470874	210470875	chr2:210470875:A:C	rs3856342	A	C	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr2	211523687	211523688	chr2:211523688:G:A	rs151079290	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr2	212228954	212228955	chr2:212228955:G:T	rs10201835	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	6.589040073520056	GTCGTAAAA
chr2	212672227	212672228	chr2:212672228:C:T	rs138363112	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr2	213669825	213669826	chr2:213669826:C:A	chr2:213669826:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr2	214140325	214140326	chr2:214140326:G:A	rs34869910	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	214194953	214194954	chr2:214194954:A:C	rs7576252	A	C	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr2	215269856	215269857	chr2:215269857:T:A	rs139544489	T	A	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr2	215285207	215285208	chr2:215285208:C:G	rs115946358	C	G	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr2	215863869	215863870	chr2:215863870:C:T	rs59791268	C	T	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr2	215863885	215863886	chr2:215863886:G:A	rs61607127	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	7.026203907121121	GTCATAAAA
chr2	215865184	215865185	chr2:215865185:G:A	rs58629807	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	6.268873658112532	CTCGTAAAC
chr2	216017772	216017773	chr2:216017773:G:T	rs376255703	G	T	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr2	216083159	216083160	chr2:216083160:A:C	rs6729928	A	C	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr2	216350795	216350796	chr2:216350796:C:T	rs11685872	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	216408698	216408699	chr2:216408699:A:G	rs544932308	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr2	217066773	217066774	chr2:217066774:A:T	rs2287289	A	T	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	217745529	217745530	chr2:217745530:G:A	rs10804262	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr2	217816603	217816604	chr2:217816604:G:A	rs918380200	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr2	217816616	217816617	chr2:217816617:C:T	rs4674216	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr2	217947238	217947239	chr2:217947239:T:A	rs7566469	T	A	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr2	219716996	219716997	chr2:219716997:T:C	rs72963471	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	219751686	219751687	chr2:219751687:C:T	rs12694481	C	T	-	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr2	220034598	220034599	chr2:220034599:T:C	rs6757056	T	C	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr2	220062645	220062646	chr2:220062646:C:T	rs730353	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr2	220225915	220225916	chr2:220225916:C:G	rs4092292	C	G	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr2	220227866	220227867	chr2:220227867:G:C	rs17610205	G	C	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr2	220703692	220703693	chr2:220703693:C:T	rs1517459	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.232433356227913	6.838593505408839	GTCGTTAAA
chr2	221518044	221518045	chr2:221518045:G:A	rs145641847	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr2	221883730	221883731	chr2:221883731:T:C	rs4099420	T	C	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr2	222242115	222242116	chr2:222242116:C:T	rs72960894	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr2	222332401	222332402	chr2:222332402:A:T	rs143898238	A	T	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr2	222521837	222521838	chr2:222521838:A:G	rs3739000	A	G	G	Hoxd9.mouse_homeodomain_3	5	1	+	7.911344677288588	1.2958017168447644	GTTGTAAAA
chr2	222521858	222521859	chr2:222521859:C:T	rs3738999	C	T	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr2	222752276	222752277	chr2:222752277:G:A	rs62186284	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr2	222835850	222835851	chr2:222835851:T:G	rs11901580	T	G	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	223448631	223448632	chr2:223448632:G:A	rs1371547	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr2	224216257	224216258	chr2:224216258:T:G	rs13022608	T	G	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr2	224294732	224294733	chr2:224294733:T:C	rs17178608	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr2	224437065	224437066	chr2:224437066:G:A	rs113824136	G	A	g	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr2	225240411	225240412	chr2:225240412:A:G	rs1373213	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr2	226886129	226886130	chr2:226886130:C:G	rs61572116	C	G	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr2	227230235	227230236	chr2:227230236:G:A	rs62277839	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr2	227450719	227450720	chr2:227450720:G:A	rs34664151	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr2	227527913	227527914	chr2:227527914:C:G	rs6436700	C	G	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr2	228118109	228118110	chr2:228118110:C:T	rs12621548	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr2	229107932	229107933	chr2:229107933:G:A	rs16825725	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr2	229142061	229142062	chr2:229142062:C:T	rs62190382	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	229471260	229471261	chr2:229471261:T:C	rs35277260	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr2	229587079	229587080	chr2:229587080:A:G	rs764410	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr2	229980736	229980737	chr2:229980737:G:A	rs75516638	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	230016380	230016381	chr2:230016381:G:A	rs56323616	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr2	231052697	231052698	chr2:231052698:T:C	rs115961793	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr2	231118460	231118461	chr2:231118461:G:A	rs112619219	G	A	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr2	231162581	231162582	chr2:231162582:G:A	rs113246229	G	A	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr2	231514743	231514744	chr2:231514744:C:G	rs74576875	C	G	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.8073383678986845	8.232433356227913	CTCGTTAAA
chr2	231514832	231514833	chr2:231514833:T:C	rs1057467467	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr2	231904227	231904228	chr2:231904228:G:A	rs878369	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr2	232286246	232286247	chr2:232286247:C:G	rs114029039	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr2	232575140	232575141	chr2:232575141:G:C	rs10185980	G	C	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	4.756062684237877	GTTGTAAAA
chr2	232597384	232597385	chr2:232597385:G:A	rs10206657	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr2	232929117	232929118	chr2:232929118:C:T	rs13386708	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr2	232980431	232980432	chr2:232980432:G:A	rs969783996	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr2	232980439	232980440	chr2:232980440:C:T	rs73107106	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr2	233059062	233059063	chr2:233059063:A:G	rs768608740	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.880089539778433	5.717515674867453	CTCGTAAAA
chr2	234456206	234456207	chr2:234456207:C:T	rs1876715	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr2	234629783	234629784	chr2:234629784:T:A	rs72985559	T	A	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr2	234674675	234674676	chr2:234674676:T:C	rs753802062	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr2	234982438	234982439	chr2:234982439:G:C	rs6748920	G	C	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	235006149	235006150	chr2:235006150:G:A	rs10211407	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr2	235053565	235053566	chr2:235053566:T:C	rs10177808	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr2	235141746	235141747	chr2:235141747:C:T	rs6716118	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	6.195197301577001	CTCGTAAAT
chr2	235336249	235336250	chr2:235336250:G:T	rs6712169	G	T	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr2	235336265	235336266	chr2:235336266:C:G	rs6414039	C	G	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	235340295	235340296	chr2:235340296:G:A	rs6728599	G	A	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr2	235631025	235631026	chr2:235631026:C:T	rs749786311	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr2	235725950	235725951	chr2:235725951:A:G	rs1009987088	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr2	236170919	236170920	chr2:236170920:G:T	rs10180215	G	T	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr2	236642325	236642326	chr2:236642326:G:T	rs11688175	G	T	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr2	236642327	236642328	chr2:236642328:C:T	rs11677406	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr2	236743017	236743018	chr2:236743018:A:G	rs146494062	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr2	236743032	236743033	chr2:236743033:G:A	rs6728526	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr2	236856715	236856716	chr2:236856716:C:T	rs7581272	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr2	236856737	236856738	chr2:236856738:G:A	rs116079918	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	237118594	237118595	chr2:237118595:A:G	rs73999636	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr2	237171570	237171571	chr2:237171571:G:A	rs4621125	G	A	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr2	237172104	237172105	chr2:237172105:C:T	rs1041739425	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr2	237596981	237596982	chr2:237596982:A:G	rs6709393	A	G	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr2	238285874	238285875	chr2:238285875:A:G	rs141930208	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr2	238515631	238515632	chr2:238515632:T:C	rs55915157	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr2	238569631	238569632	chr2:238569632:A:G	rs62194975	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr2	238571184	238571185	chr2:238571185:A:G	rs6719491	A	G	a	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr2	238636073	238636074	chr2:238636074:C:T	rs114447006	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr2	238716508	238716509	chr2:238716509:A:G	rs13392601	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.802115875352188	6.620941494926711	GTCGTAAAG
chr2	238948130	238948131	chr2:238948131:C:T	rs79074669	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.176266619256224	6.564130940802952	GGCGTAAAA
chr2	238948142	238948143	chr2:238948143:A:G	rs4241229	A	G	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr2	239222175	239222176	chr2:239222176:C:T	rs3791610	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr2	239265304	239265305	chr2:239265305:C:T	rs57048296	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr2	239401491	239401492	chr2:239401492:C:T	rs1454241549	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr2	239660265	239660266	chr2:239660266:T:G	rs13024940	T	G	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr2	240184613	240184614	chr2:240184614:G:A	rs7590068	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.232433356227913	6.838593505408839	GTCGTTAAA
chr2	240604772	240604773	chr2:240604773:C:T	rs4676348	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr2	240820600	240820601	chr2:240820601:C:T	rs1032255896	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr2	240876835	240876836	chr2:240876836:G:A	rs5013751	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr2	241109085	241109086	chr2:241109086:G:A	rs570264868	G	A	g	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr2	241217387	241217388	chr2:241217388:G:A	rs56098160	G	A	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr2	241499655	241499656	chr2:241499656:G:A	rs2279846	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.911344677288588	GTCGTAAAA
chr2	241569409	241569410	chr2:241569410:C:T	rs7371112	C	T	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr2	241663053	241663054	chr2:241663054:C:T	rs3935809	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	7.299208998835316	ATCGTAAAA
chr2	241795603	241795604	chr2:241795604:G:A	rs561889693	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr2	241795616	241795617	chr2:241795617:T:A	rs115306129	T	A	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr2	241885905	241885906	chr2:241885906:C:T	rs7421514	C	T	.	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr2	241966466	241966467	chr2:241966467:G:A	rs73115118	G	A	.	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr20	251465	251466	chr20:251466:G:C	rs366968	G	C	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr20	267040	267041	chr20:267041:C:G	chr20:267041:C:G	C	G	A	Hoxd9.mouse_homeodomain_3	2	1	+	8.124010147682185	1.5638426547780266	GCCGTAAAA
chr20	597373	597374	chr20:597374:A:C	rs58448358	A	C	C	Hoxd9.mouse_homeodomain_3	7	1	+	6.906634116835357	3.740727335800183	GCCGTAAAC
chr20	697220	697221	chr20:697221:A:G	rs6038398	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr20	1091672	1091673	chr20:1091673:A:G	rs11696886	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr20	1537737	1537738	chr20:1537738:T:G	rs2256250	T	G	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr20	1537741	1537742	chr20:1537742:G:A	rs987758228	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr20	2347114	2347115	chr20:2347115:G:A	rs142219635	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr20	2647001	2647002	chr20:2647002:C:A	rs2038244	C	A	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr20	2688310	2688311	chr20:2688311:A:T	rs6115555	A	T	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr20	2775227	2775228	chr20:2775228:A:G	rs574109435	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr20	3184039	3184040	chr20:3184040:T:C	rs2295545	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	6.73017029686311	GTTGTAAAA
chr20	3811333	3811334	chr20:3811334:A:G	rs76006501	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr20	3885783	3885784	chr20:3885784:C:T	rs76427382	C	T	c	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr20	3974014	3974015	chr20:3974015:C:A	rs73086549	C	A	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr20	4585316	4585317	chr20:4585317:T:G	rs4815716	T	G	G	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr20	4591273	4591274	chr20:4591274:A:C	rs34552667	A	C	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	6.291125849088757	GTCATAAAA
chr20	4613797	4613798	chr20:4613798:G:A	rs117320938	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr20	4714054	4714055	chr20:4714055:T:A	rs6052786	T	A	t	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr20	4714056	4714057	chr20:4714057:G:T	rs6116483	G	T	g	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr20	4825317	4825318	chr20:4825318:G:T	rs2423050	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	8.087808497260832	5.371664042673228	GTCGTAAAC
chr20	5647610	5647611	chr20:5647611:T:A	rs6053567	T	A	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	7.347292586060447	GTCATAAAA
chr20	5836211	5836212	chr20:5836212:C:T	rs6038300	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr20	5839197	5839198	chr20:5839198:C:T	rs237096	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	7.026203907121121	GTTGTAAAA
chr20	6450809	6450810	chr20:6450810:A:C	rs6054266	A	C	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.77757273876414	CTCATAAAA
chr20	6561986	6561987	chr20:6561987:C:T	rs1407031	C	T	c	Hoxd9.mouse_homeodomain_3	2	1	+	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr20	6596256	6596257	chr20:6596257:C:T	rs1321450	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr20	7085463	7085464	chr20:7085464:G:C	rs61620462	G	C	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr20	8213930	8213931	chr20:8213931:C:T	rs76896235	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.123298981813135	6.2381582116456675	GTCGGAAAA
chr20	9121466	9121467	chr20:9121467:A:G	rs11697355	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr20	9393627	9393628	chr20:9393628:A:G	rs142617224	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr20	10090858	10090859	chr20:10090859:C:T	rs6032781	C	T	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr20	10125915	10125916	chr20:10125916:A:G	rs34485107	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr20	10218223	10218224	chr20:10218224:C:T	rs897441595	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr20	10218230	10218231	chr20:10218231:C:A	rs117049727	C	A	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr20	10488581	10488582	chr20:10488582:C:T	rs640415	C	T	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr20	10712398	10712399	chr20:10712399:C:T	rs76008228	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr20	10951369	10951370	chr20:10951370:G:A	rs6077978	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr20	11207834	11207835	chr20:11207835:T:C	rs1013497	T	C	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr20	11233211	11233212	chr20:11233212:C:T	rs2143859	C	T	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr20	11455641	11455642	chr20:11455642:G:A	rs79968983	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr20	11932241	11932242	chr20:11932242:G:A	rs4814042	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	6.77757273876414	CTCGTAAAC
chr20	12129412	12129413	chr20:12129413:T:C	rs13038672	T	C	c	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr20	13069016	13069017	chr20:13069017:G:A	rs6041838	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.123298981813135	5.729459130994061	GTCGGAAAA
chr20	13723368	13723369	chr20:13723369:C:T	rs6042318	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr20	13790585	13790586	chr20:13790586:A:G	rs28680787	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr20	13852417	13852418	chr20:13852418:T:C	rs6042386	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr20	14337032	14337033	chr20:14337033:C:A	rs204606	C	A	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr20	15005223	15005224	chr20:15005224:T:C	rs760635014	T	C	t	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr20	15052586	15052587	chr20:15052587:A:G	rs373084	A	G	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr20	15139676	15139677	chr20:15139677:A:G	rs1743471	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr20	15928637	15928638	chr20:15928638:A:G	rs6043622	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr20	16607832	16607833	chr20:16607833:G:A	rs115032021	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr20	16655777	16655778	chr20:16655778:G:A	rs73105273	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr20	16713956	16713957	chr20:16713957:G:A	rs6044262	G	A	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr20	17018357	17018358	chr20:17018358:A:G	rs75672763	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr20	17558572	17558573	chr20:17558573:T:A	rs999042183	T	A	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr20	17722107	17722108	chr20:17722108:G:A	rs2039076	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr20	18001431	18001432	chr20:18001432:G:A	rs111411678	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	8.087808497260832	6.69396864644176	GTCGTAAAC
chr20	18001826	18001827	chr20:18001827:A:G	rs181072429	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr20	18191379	18191380	chr20:18191380:A:G	rs6081030	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr20	19457216	19457217	chr20:19457217:T:C	rs6081601	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr20	19690407	19690408	chr20:19690408:A:G	rs1535244	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.589037152396075	0.7205945907994784	CTCGTAAAT
chr20	19920582	19920583	chr20:19920583:A:C	rs186707020	A	C	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	5.7824267684371495	GTTGTAAAA
chr20	19943641	19943642	chr20:19943642:G:A	rs13037004	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.123298981813135	6.2381582116456675	GTCGGAAAA
chr20	19985850	19985851	chr20:19985851:A:G	rs7260833	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr20	19985872	19985873	chr20:19985873:C:A	rs199600	C	A	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr20	20203162	20203163	chr20:20203163:G:A	rs6081918	G	A	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr20	20825287	20825288	chr20:20825288:A:G	rs73607422	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr20	20825295	20825296	chr20:20825296:C:G	rs11700343	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	5.724807546727723	CTCGTAAAA
chr20	23373452	23373453	chr20:23373453:C:T	rs6083095	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr20	23630203	23630204	chr20:23630204:G:A	rs6515375	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr20	23902679	23902680	chr20:23902680:T:G	rs4408792	T	G	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr20	23902698	23902699	chr20:23902699:G:A	rs138451744	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.123298981813135	6.2381582116456675	GTCGGAAAA
chr20	24027428	24027429	chr20:24027429:C:T	rs17823476	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr20	24379564	24379565	chr20:24379565:G:A	rs6114680	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	6.305075308533882	CCCGTAAAA
chr20	24800783	24800784	chr20:24800784:T:C	rs226697	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr20	24932397	24932398	chr20:24932398:T:C	rs6050160	T	C	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr20	24940626	24940627	chr20:24940627:C:T	rs6515563	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr20	24940629	24940630	chr20:24940630:T:C	rs227641	T	C	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr20	24942620	24942621	chr20:24942621:T:C	rs227644	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr20	24960184	24960185	chr20:24960185:C:G	rs1883831	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	4.543633166302246	CCCGTAAAA
chr20	25139464	25139465	chr20:25139465:C:T	rs6037030	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr20	25139481	25139482	chr20:25139482:A:T	rs6037031	A	T	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr20	25227572	25227573	chr20:25227573:C:T	rs80088191	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr20	25398823	25398824	chr20:25398824:C:G	rs73107474	C	G	c	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr20	28548911	28548912	chr20:28548912:T:C	rs1412645382	T	C	.	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr20	28558241	28558242	chr20:28558242:G:A	rs1408529075	G	A	.	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr20	30485057	30485058	chr20:30485058:T:C	rs1330133382	T	C	.	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr20	31666986	31666987	chr20:31666987:G:A	rs79616906	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr20	31704935	31704936	chr20:31704936:T:C	rs73117924	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr20	32460578	32460579	chr20:32460579:G:A	rs1555133	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr20	33832267	33832268	chr20:33832268:A:G	rs17405840	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr20	34111660	34111661	chr20:34111661:T:G	rs1002064115	T	G	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.8073383678986845	6.5899623370518565	CTCGTTAAA
chr20	34111671	34111672	chr20:34111672:C:A	rs80240810	C	A	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr20	34376281	34376282	chr20:34376282:A:T	rs1053172651	A	T	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr20	34583563	34583564	chr20:34583564:G:C	rs932542	G	C	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr20	34709365	34709366	chr20:34709366:A:C	rs765845532	A	C	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr20	34874030	34874031	chr20:34874031:G:A	rs56178595	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr20	35053416	35053417	chr20:35053417:T:A	rs11907438	T	A	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr20	35056188	35056189	chr20:35056189:C:T	rs73905063	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr20	35592612	35592613	chr20:35592613:G:A	rs1886695	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr20	36460828	36460829	chr20:36460829:G:A	rs140432913	G	A	G	Hoxd9.mouse_homeodomain_3	1	1	-	7.698915159352956	8.880089539778433	CCCGTAAAA
chr20	36628314	36628315	chr20:36628315:C:A	rs6101519	C	A	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr20	36628340	36628341	chr20:36628341:C:T	rs114854243	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr20	37288339	37288340	chr20:37288340:G:A	rs78210710	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr20	37347929	37347930	chr20:37347930:C:T	rs184993815	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr20	37597363	37597364	chr20:37597364:C:T	rs4810915	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr20	38189313	38189314	chr20:38189314:G:A	rs6127376	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr20	38791350	38791351	chr20:38791351:G:A	rs2425370	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr20	38962056	38962057	chr20:38962057:A:G	rs190035894	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr20	38962068	38962069	chr20:38962069:G:A	rs142619908	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr20	40619624	40619625	chr20:40619625:G:A	rs6065254	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.123298981813135	5.729459130994061	GTCGGAAAA
chr20	41875140	41875141	chr20:41875141:C:A	rs6072515	C	A	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr20	42565607	42565608	chr20:42565608:C:T	rs140662061	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr20	43183782	43183783	chr20:43183783:T:A	rs118169367	T	A	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr20	43543315	43543316	chr20:43543316:G:A	rs3830163	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr20	43745650	43745651	chr20:43745651:T:C	rs73911031	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr20	44097241	44097242	chr20:44097242:A:T	rs6130524	A	T	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.232433356227913	5.679498345944778	GTCGTTAAA
chr20	45036196	45036197	chr20:45036197:G:A	rs2213609	G	A	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr20	45061187	45061188	chr20:45061188:G:A	rs6017478	G	A	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.802115875352188	9.305184528107661	GTCGTAAAG
chr20	45139891	45139892	chr20:45139892:T:C	rs6032016	T	C	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr20	45387461	45387462	chr20:45387462:A:G	rs2263763	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr20	45592701	45592702	chr20:45592702:G:A	rs144364351	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr20	46088560	46088561	chr20:46088561:G:C	rs113253402	G	C	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr20	46088592	46088593	chr20:46088593:C:T	rs61060781	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr20	46090051	46090052	chr20:46090052:C:T	rs561370941	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr20	46092900	46092901	chr20:46092901:C:T	rs4812991	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr20	46246733	46246734	chr20:46246734:G:A	rs537410145	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr20	46463924	46463925	chr20:46463925:C:G	rs41283028	C	G	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr20	47124202	47124203	chr20:47124203:C:G	rs754963009	C	G	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr20	47621118	47621119	chr20:47621119:C:T	rs6012225	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	7.026203907121121	GTTGTAAAA
chr20	47674136	47674137	chr20:47674137:A:G	rs7261940	A	G	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr20	47721364	47721365	chr20:47721365:A:C	rs9679899	A	C	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr20	47789440	47789441	chr20:47789441:C:T	rs76817835	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr20	47999852	47999853	chr20:47999853:A:C	rs11906231	A	C	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr20	48132031	48132032	chr20:48132032:C:T	rs62201133	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr20	48208745	48208746	chr20:48208746:T:G	rs852362	T	G	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr20	48234964	48234965	chr20:48234965:G:A	rs707518	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr20	48300765	48300766	chr20:48300766:C:T	rs969127	C	T	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr20	48371103	48371104	chr20:48371104:A:G	rs6019094	A	G	a	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr20	48724462	48724463	chr20:48724463:T:C	rs6066826	T	C	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr20	48724467	48724468	chr20:48724468:T:C	rs6066827	T	C	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr20	49169990	49169991	chr20:49169991:T:C	rs348275	T	C	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr20	49993755	49993756	chr20:49993756:A:G	rs6067309	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.69304884965439	5.530474984743409	ATCGTAAAA
chr20	50794601	50794602	chr20:50794602:G:A	chr20:50794602:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr20	51001907	51001908	chr20:51001908:C:A	rs17788960	C	A	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	5.091193913311079	CTCGTTAAA
chr20	51159942	51159943	chr20:51159943:T:C	rs17727534	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr20	51159949	51159950	chr20:51159950:G:A	rs10485617	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr20	51561630	51561631	chr20:51561631:A:G	rs57387078	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr20	51631067	51631068	chr20:51631068:C:T	rs73267750	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr20	51876573	51876574	chr20:51876574:A:C	rs8120164	A	C	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr20	51886591	51886592	chr20:51886592:T:A	rs62226909	T	A	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr20	52105616	52105617	chr20:52105617:T:C	rs193229160	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr20	52105670	52105671	chr20:52105671:G:A	rs550252813	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr20	52110355	52110356	chr20:52110356:G:T	rs7273444	G	T	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr20	53185116	53185117	chr20:53185117:A:T	rs2904357	A	T	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr20	53258956	53258957	chr20:53258957:T:C	rs117169094	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr20	53447649	53447650	chr20:53447650:T:C	rs6022483	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr20	53570444	53570445	chr20:53570445:G:A	rs2766673	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr20	53801350	53801351	chr20:53801351:G:A	rs3764716	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr20	53926505	53926506	chr20:53926506:G:A	rs76501931	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr20	54069627	54069628	chr20:54069628:C:T	rs17287759	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr20	54669092	54669093	chr20:54669093:G:T	rs111894951	G	T	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr20	55508792	55508793	chr20:55508793:G:A	rs891089480	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	8.087808497260832	6.69396864644176	GTCGTAAAC
chr20	55696871	55696872	chr20:55696872:G:A	rs9789782	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr20	56348141	56348142	chr20:56348142:G:A	rs8118732	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr20	56941585	56941586	chr20:56941586:C:A	rs1276406	C	A	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr20	57093657	57093658	chr20:57093658:C:T	rs141751083	C	T	c	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr20	57109026	57109027	chr20:57109027:A:G	rs913068	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	6.916975105184722	GTCATAAAA
chr20	57317468	57317469	chr20:57317469:G:C	rs4811836	G	C	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr20	57358709	57358710	chr20:57358710:C:T	rs78716855	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr20	57410032	57410033	chr20:57410033:T:C	rs6014991	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr20	57410042	57410043	chr20:57410043:A:C	rs6014992	A	C	C	Hoxd9.mouse_homeodomain_3	4	1	-	6.906634116835357	4.72474857054083	GCCGTAAAC
chr20	57993937	57993938	chr20:57993938:C:T	rs10854210	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr20	58219852	58219853	chr20:58219853:T:C	rs608502	T	C	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr20	58463391	58463392	chr20:58463392:G:A	rs112698857	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr20	58652831	58652832	chr20:58652832:G:A	rs182663074	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr20	58869090	58869091	chr20:58869091:G:C	rs6064716	G	C	g	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	1.2471708749945272	CTCGTTAAA
chr20	58883468	58883469	chr20:58883469:A:G	rs77517110	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr20	59236109	59236110	chr20:59236110:C:T	rs183777	C	T	c	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr20	59257928	59257929	chr20:59257929:G:T	rs2865733	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.232433356227913	3.411141489862676	GTCGTTAAA
chr20	59419774	59419775	chr20:59419775:G:A	rs111351221	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr20	59516214	59516215	chr20:59516215:C:T	rs12165253	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	6.195197301577001	CTCGTAAAT
chr20	59779893	59779894	chr20:59779894:G:A	rs1182505	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr20	59782658	59782659	chr20:59782659:T:C	rs1182509	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr20	59786029	59786030	chr20:59786030:T:G	rs74408654	T	G	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr20	61002323	61002324	chr20:61002324:A:C	rs111494994	A	C	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr20	61133793	61133794	chr20:61133794:A:G	rs2281573	A	G	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr20	61299761	61299762	chr20:61299762:A:G	rs4810228	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr20	61301963	61301964	chr20:61301964:G:A	rs78749984	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr20	61357778	61357779	chr20:61357779:C:T	rs28693488	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr20	61607596	61607597	chr20:61607597:G:A	rs877698	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.123298981813135	5.729459130994061	GTCGGAAAA
chr20	61609190	61609191	chr20:61609191:C:T	rs6121726	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr20	61742634	61742635	chr20:61742635:G:C	rs6061788	G	C	C	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	1.4347812767068095	CTCATAAAA
chr20	61836717	61836718	chr20:61836718:T:C	rs12624443	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.491880116855494	CTCATAAAA
chr20	62516258	62516259	chr20:62516259:C:T	rs62197861	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr20	62608533	62608534	chr20:62608534:A:T	rs28483326	A	T	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr20	62685130	62685131	chr20:62685131:T:C	rs11696171	T	C	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr20	62685131	62685132	chr20:62685132:G:A	rs532962409	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr20	62840720	62840721	chr20:62840721:C:A	rs1048100	C	A	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr20	63053968	63053969	chr20:63053969:G:A	rs79710855	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr20	63125694	63125695	chr20:63125695:C:T	rs6062411	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr20	63268703	63268704	chr20:63268704:T:C	chr20:63268704:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.491880116855494	CTCATAAAA
chr20	63268718	63268719	chr20:63268719:C:G	rs4809281	C	G	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr20	63628336	63628337	chr20:63628337:G:A	rs79245287	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr20	63628368	63628369	chr20:63628369:G:T	chr20:63628369:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr20	64255731	64255732	chr20:64255732:C:G	rs879467615	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr20	64255761	64255762	chr20:64255762:G:T	rs970550456	G	T	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr21	8993545	8993546	chr21:8993546:T:A	rs79685325	T	A	.	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr21	8993548	8993549	chr21:8993549:G:A	rs75806827	G	A	.	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr21	8993549	8993550	chr21:8993550:C:A	rs372665837	C	A	.	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr21	8994394	8994395	chr21:8994395:G:A	rs747115031	G	A	.	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr21	10400939	10400940	chr21:10400940:T:C	rs1810530	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr21	10426174	10426175	chr21:10426175:A:G	rs3888752	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr21	15028481	15028482	chr21:15028482:T:C	rs146714089	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr21	15667126	15667127	chr21:15667127:A:T	rs573606902	A	T	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr21	16117778	16117779	chr21:16117779:T:A	rs58529486	T	A	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	5.867108747657061	GTCATAAAA
chr21	16419918	16419919	chr21:16419919:C:A	rs9977021	C	A	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr21	16563252	16563253	chr21:16563253:C:T	rs190667989	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr21	18772667	18772668	chr21:18772668:A:G	rs2226762	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr21	18931384	18931385	chr21:18931385:A:T	rs441839	A	T	A	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr21	19824293	19824294	chr21:19824294:C:G	rs2825822	C	G	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr21	21821726	21821727	chr21:21821727:T:G	rs2827074	T	G	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr21	21898000	21898001	chr21:21898001:T:C	rs8132732	T	C	C	Hoxd9.mouse_homeodomain_3	4	1	+	7.8073383678986845	4.644764502987703	CTCGTTAAA
chr21	22179884	22179885	chr21:22179885:A:G	rs11701180	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.802115875352188	1.1865729149083646	GTCGTAAAG
chr21	22408543	22408544	chr21:22408544:C:G	rs56308805	C	G	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr21	22408555	22408556	chr21:22408556:A:C	rs60430073	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.911344677288588	4.745437896253414	GTTGTAAAA
chr21	22582309	22582310	chr21:22582310:T:C	rs2827617	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr21	23271316	23271317	chr21:23271317:C:T	rs370627486	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr21	24257931	24257932	chr21:24257932:C:T	rs73140951	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr21	24273013	24273014	chr21:24273014:A:G	rs62215843	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr21	24393785	24393786	chr21:24393786:G:A	rs2020117	G	A	-	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr21	25461742	25461743	chr21:25461743:C:A	rs9984020	C	A	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr21	26015656	26015657	chr21:26015657:C:A	rs2830004	C	A	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr21	26801731	26801732	chr21:26801732:T:G	rs16979127	T	G	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	4.829041988575794	CTCATAAAA
chr21	26838337	26838338	chr21:26838338:T:C	rs229042	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr21	26856783	26856784	chr21:26856784:T:G	rs17651438	T	G	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr21	27268345	27268346	chr21:27268346:A:G	rs235933	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr21	27339888	27339889	chr21:27339889:T:C	rs400970	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr21	27362359	27362360	chr21:27362360:C:G	rs61499913	C	G	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr21	27885724	27885725	chr21:27885725:G:A	rs1023141	G	A	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr21	28137180	28137181	chr21:28137181:C:T	rs2831528	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr21	28473888	28473889	chr21:28473889:T:C	rs58339555	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr21	28871642	28871643	chr21:28871643:T:C	rs192409856	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr21	29237666	29237667	chr21:29237667:G:C	chr21:29237667:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr21	30227567	30227568	chr21:30227568:C:T	rs7282785	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr21	30227593	30227594	chr21:30227594:T:C	rs2832664	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr21	30271244	30271245	chr21:30271245:G:A	rs2247852	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.911344677288588	GTCGTAAAA
chr21	30271264	30271265	chr21:30271265:G:A	rs2832745	G	A	g	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr21	30447331	30447332	chr21:30447332:G:A	rs2832881	G	A	.	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr21	31087940	31087941	chr21:31087941:A:G	rs7279662	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr21	31154206	31154207	chr21:31154207:C:T	rs12482307	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr21	31173998	31173999	chr21:31173999:G:C	rs727550	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	1.1025460160274478	CTCGTAAAC
chr21	31353467	31353468	chr21:31353468:A:G	rs1041741	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.491880116855494	CTCATAAAA
chr21	31840664	31840665	chr21:31840665:G:A	rs75261122	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr21	31840698	31840699	chr21:31840699:A:G	rs78987360	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr21	31988086	31988087	chr21:31988087:C:T	rs75423607	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr21	32021884	32021885	chr21:32021885:C:T	rs184929647	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr21	32021885	32021886	chr21:32021886:G:A	rs79658175	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	6.906634116835357	6.021493346667889	GCCGTAAAC
chr21	32021894	32021895	chr21:32021895:G:A	rs189304064	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr21	32322275	32322276	chr21:32322276:A:T	rs2833766	A	T	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr21	32978513	32978514	chr21:32978514:C:A	rs569701254	C	A	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr21	33449842	33449843	chr21:33449843:T:A	rs2834217	T	A	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr21	34198609	34198610	chr21:34198610:G:C	rs770612685	G	C	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr21	34227773	34227774	chr21:34227774:G:A	rs73364503	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	6.906634116835357	6.021493346667889	GCCGTAAAC
chr21	34320014	34320015	chr21:34320015:C:T	rs17742147	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr21	34629303	34629304	chr21:34629304:G:A	rs6517248	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr21	34667764	34667765	chr21:34667765:C:T	rs117184570	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr21	34830184	34830185	chr21:34830185:T:C	rs16992400	T	C	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr21	34884744	34884745	chr21:34884745:T:C	chr21:34884745:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr21	34915524	34915525	chr21:34915525:A:G	rs935956912	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr21	34933468	34933469	chr21:34933469:T:C	rs2032098	T	C	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr21	34979593	34979594	chr21:34979594:T:C	rs2834712	T	C	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr21	35050858	35050859	chr21:35050859:A:G	rs149949535	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr21	35254531	35254532	chr21:35254532:G:A	rs148617503	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	6.305075308533882	CCCGTAAAA
chr21	35254534	35254535	chr21:35254535:G:T	rs2242704	G	T	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr21	35254535	35254536	chr21:35254536:T:G	rs144273412	T	G	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr21	35635553	35635554	chr21:35635554:G:A	rs111744472	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr21	35733059	35733060	chr21:35733060:T:C	rs2835108	T	C	C	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr21	36120582	36120583	chr21:36120583:C:A	rs2242798	C	A	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr21	36166883	36166884	chr21:36166884:G:T	rs140351799	G	T	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr21	36211505	36211506	chr21:36211506:C:T	rs2239568	C	T	c	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr21	36239264	36239265	chr21:36239265:G:C	rs2245397	G	C	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr21	36239278	36239279	chr21:36239279:G:T	rs2835325	G	T	G	Hoxd9.mouse_homeodomain_3	1	1	-	8.124010147682185	6.752249517824526	GCCGTAAAA
chr21	36271635	36271636	chr21:36271636:C:A	rs61033710	C	A	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr21	36327634	36327635	chr21:36327635:T:C	rs2898284	T	C	c	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr21	36488564	36488565	chr21:36488565:C:T	rs59724458	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr21	36538301	36538302	chr21:36538302:A:G	rs9305591	A	G	g	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr21	36613590	36613591	chr21:36613591:A:G	rs933641673	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr21	36847774	36847775	chr21:36847775:T:A	rs77351861	T	A	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr21	36977550	36977551	chr21:36977551:A:G	rs11909152	A	G	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr21	38121377	38121378	chr21:38121378:G:A	rs73904700	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	6.305075308533882	CCCGTAAAA
chr21	38222905	38222906	chr21:38222906:G:A	rs1008842	G	A	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr21	38478785	38478786	chr21:38478786:G:C	rs2836432	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	1.4347812767068095	CTCATAAAA
chr21	38695520	38695521	chr21:38695521:A:G	rs2836633	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	-	7.589037152396075	7.662713508931605	CTCGTAAAT
chr21	38922156	38922157	chr21:38922157:C:T	rs528325081	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr21	40066613	40066614	chr21:40066614:A:C	rs2837412	A	C	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.911344677288588	2.745017035203504	GTTGTAAAA
chr21	40567812	40567813	chr21:40567813:C:A	rs2837709	C	A	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr21	41422153	41422154	chr21:41422154:T:C	rs461981	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr21	41768083	41768084	chr21:41768084:G:A	rs34552596	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr21	41774695	41774696	chr21:41774696:A:G	rs13047126	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr21	41813808	41813809	chr21:41813809:C:T	rs529066562	C	T	-	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr21	41813814	41813815	chr21:41813815:C:G	rs529985886	C	G	-	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr21	41976554	41976555	chr21:41976555:T:A	rs9980268	T	A	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr21	42225201	42225202	chr21:42225202:T:C	rs111529600	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr21	42568346	42568347	chr21:42568347:T:C	rs35343162	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr21	43365008	43365009	chr21:43365009:G:A	rs539072	G	A	.	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr21	44915366	44915367	chr21:44915367:T:C	rs2838735	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr21	44920927	44920928	chr21:44920928:A:G	rs2070947	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.802115875352188	1.1865729149083646	GTCGTAAAG
chr21	45109375	45109376	chr21:45109376:G:C	rs2838785	G	C	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr21	45121137	45121138	chr21:45121138:G:C	rs116892425	G	C	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr21	45143904	45143905	chr21:45143905:C:T	rs13047590	C	T	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr21	45486712	45486713	chr21:45486713:C:T	rs2274808	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr21	45619831	45619832	chr21:45619832:C:T	rs8131482	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr21	45972451	45972452	chr21:45972452:G:A	rs11701693	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr21	46077870	46077871	chr21:46077871:G:A	rs9978499	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	7.802115875352188	7.189980196898917	GTCGTAAAG
chr21	46077873	46077874	chr21:46077874:G:A	rs137973708	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr21	46543235	46543236	chr21:46543236:A:G	rs11701571	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr21	46552568	46552569	chr21:46552569:T:C	rs111790630	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr21	46617430	46617431	chr21:46617431:G:T	rs993461	G	T	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr22	16389834	16389835	chr22:16389835:T:G	rs131534	T	G	.	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr22	16904255	16904256	chr22:16904256:T:C	rs4006152	T	C	.	Hoxd9.mouse_homeodomain_3	4	1	+	7.911344677288588	4.748770812377607	GTTGTAAAA
chr22	16929237	16929238	chr22:16929238:C:T	rs5994093	C	T	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr22	16970819	16970820	chr22:16970820:T:C	rs5992600	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr22	17058734	17058735	chr22:17058735:C:G	rs1054946	C	G	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr22	17138502	17138503	chr22:17138503:A:G	rs41282459	A	G	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr22	17228937	17228938	chr22:17228938:G:A	rs5994213	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr22	17843266	17843267	chr22:17843267:G:C	rs9618139	G	C	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr22	18087579	18087580	chr22:18087580:G:A	rs361537	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr22	19271830	19271831	chr22:19271831:T:G	rs2518862	T	G	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr22	19655297	19655298	chr22:19655298:G:C	rs4819516	G	C	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr22	19735901	19735902	chr22:19735902:C:T	rs57863691	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr22	20280165	20280166	chr22:20280166:G:A	rs701415	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr22	20280181	20280182	chr22:20280182:C:T	rs854952	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr22	20320079	20320080	chr22:20320080:T:A	rs113667770	T	A	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr22	20358435	20358436	chr22:20358436:C:G	rs62218238	C	G	N	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr22	20358453	20358454	chr22:20358454:G:A	rs373944626	G	A	g	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr22	21911213	21911214	chr22:21911214:T:A	rs2876982	T	A	A	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr22	23180274	23180275	chr22:23180275:G:A	rs76654237	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr22	23357422	23357423	chr22:23357423:C:T	rs1807620	C	T	N	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr22	23680787	23680788	chr22:23680788:A:T	rs2330578	A	T	.	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	5.867108747657061	GTCATAAAA
chr22	23944787	23944788	chr22:23944788:C:T	rs1167158554	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr22	23944802	23944803	chr22:23944803:G:A	rs1437257868	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr22	23953121	23953122	chr22:23953122:A:G	rs1296198427	A	G	a	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr22	24002951	24002952	chr22:24002952:T:C	rs1201026877	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr22	24524284	24524285	chr22:24524285:C:T	rs537960784	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr22	24604261	24604262	chr22:24604262:A:T	rs5751904	A	T	a	Hoxd9.mouse_homeodomain_3	7	1	+	8.880089539778433	2.011646978181838	CTCGTAAAA
chr22	25050910	25050911	chr22:25050911:A:T	rs9306404	A	T	T	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	5.442013759327832	CTCATAAAA
chr22	25311349	25311350	chr22:25311350:C:T	rs2331036	C	T	c	Hoxd9.mouse_homeodomain_3	2	1	+	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr22	25411515	25411516	chr22:25411516:A:G	rs133257	A	G	N	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr22	25564022	25564023	chr22:25564023:C:G	rs114846233	C	G	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr22	25807153	25807154	chr22:25807154:C:T	rs56070130	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr22	26568465	26568466	chr22:26568466:G:A	rs766312538	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr22	27070774	27070775	chr22:27070775:C:A	rs150010355	C	A	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr22	27225377	27225378	chr22:27225378:C:T	rs76620881	C	T	C	Hoxd9.mouse_homeodomain_3	8	1	+	7.662713508931605	7.589037152396075	CTCGTAAAC
chr22	27437018	27437019	chr22:27437019:C:A	rs529557687	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr22	27487879	27487880	chr22:27487880:T:C	rs5762196	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.911344677288588	4.748770812377607	GTTGTAAAA
chr22	27678146	27678147	chr22:27678147:G:A	rs189594237	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr22	28886213	28886214	chr22:28886214:T:G	rs565057646	T	G	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr22	29157050	29157051	chr22:29157051:A:G	rs17451544	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr22	29597399	29597400	chr22:29597400:A:T	rs185432254	A	T	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	6.922197597731219	CTCATAAAA
chr22	30308385	30308386	chr22:30308386:C:T	rs117420607	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr22	30450635	30450636	chr22:30450636:A:G	rs5753152	A	G	g	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr22	31014369	31014370	chr22:31014370:T:C	rs5753425	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr22	31053249	31053250	chr22:31053250:G:T	rs76627409	G	T	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr22	31055608	31055609	chr22:31055609:C:T	rs117706784	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr22	31055609	31055610	chr22:31055610:G:T	rs199854435	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.118436152938057	CTCGTAAAA
chr22	31135163	31135164	chr22:31135164:C:T	rs740231	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr22	31398923	31398924	chr22:31398924:T:G	chr22:31398924:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr22	31929595	31929596	chr22:31929596:A:G	rs4820999	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr22	32323780	32323781	chr22:32323781:G:A	rs73881634	G	A	a	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr22	32746256	32746257	chr22:32746257:G:A	rs57873849	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr22	32761305	32761306	chr22:32761306:G:T	rs9609622	G	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	7.807908079486923	CTCATAAAA
chr22	33014822	33014823	chr22:33014823:C:T	rs145803940	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr22	34951744	34951745	chr22:34951745:A:C	rs5750008	A	C	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr22	35293421	35293422	chr22:35293422:G:T	rs2272791	G	T	T	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.118436152938057	CTCGTAAAA
chr22	36027388	36027389	chr22:36027389:G:A	rs78377960	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr22	36529224	36529225	chr22:36529225:T:C	rs55899812	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr22	37193764	37193765	chr22:37193765:C:T	rs5756546	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr22	37194261	37194262	chr22:37194262:C:G	rs229537	C	G	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr22	37416130	37416131	chr22:37416131:G:A	rs133736	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.511874469228912	6.626733699061445	ACCGTAAAA
chr22	37501790	37501791	chr22:37501791:A:C	chr22:37501791:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.911344677288588	6.69396864644176	GTTGTAAAA
chr22	37639907	37639908	chr22:37639908:G:T	rs13055684	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr22	37639923	37639924	chr22:37639924:G:A	chr22:37639924:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr22	37926342	37926343	chr22:37926343:C:T	rs2072859	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr22	38178257	38178258	chr22:38178258:G:A	rs375579712	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr22	38905957	38905958	chr22:38905958:C:T	rs5995636	C	T	T	Hoxd9.mouse_homeodomain_3	1	1	-	7.176266619256224	6.752249517824526	GGCGTAAAA
chr22	38925963	38925964	chr22:38925964:C:T	rs190778127	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr22	38925966	38925967	chr22:38925967:C:T	rs151311928	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr22	38943774	38943775	chr22:38943775:C:T	rs17000548	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr22	39126934	39126935	chr22:39126935:C:T	rs79501	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr22	39178529	39178530	chr22:39178530:G:C	rs187179414	G	C	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr22	39219115	39219116	chr22:39219116:A:G	rs75279419	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr22	39520875	39520876	chr22:39520876:C:T	rs565435762	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr22	39533204	39533205	chr22:39533205:A:T	rs79349506	A	T	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr22	40044615	40044616	chr22:40044616:C:T	chr22:40044616:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.8073383678986845	3.411141489862676	CTCGTTAAA
chr22	40480229	40480230	chr22:40480230:T:C	rs6001930	T	C	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr22	41077303	41077304	chr22:41077304:A:G	rs9611491	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr22	41445262	41445263	chr22:41445263:T:C	rs114599867	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr22	42375219	42375220	chr22:42375220:C:T	rs4822120	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr22	42375241	42375242	chr22:42375242:A:G	rs146272540	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr22	42699106	42699107	chr22:42699107:T:A	rs8138577	T	A	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	6.163945085190828	CTCATAAAA
chr22	42748047	42748048	chr22:42748048:G:C	rs2092663	G	C	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr22	43231639	43231640	chr22:43231640:G:A	rs4820507	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr22	44051165	44051166	chr22:44051166:A:G	rs6006632	A	G	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr22	44120381	44120382	chr22:44120382:T:G	chr22:44120382:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr22	44184906	44184907	chr22:44184907:A:G	rs139129	A	G	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr22	44184907	44184908	chr22:44184908:T:A	rs139130	T	A	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr22	44729749	44729750	chr22:44729750:C:A	rs569884155	C	A	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr22	44729765	44729766	chr22:44729766:G:A	rs111499412	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr22	44807652	44807653	chr22:44807653:C:T	rs5766046	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr22	44860939	44860940	chr22:44860940:A:G	rs5766126	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr22	44860957	44860958	chr22:44860958:G:A	rs3830115	G	A	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr22	44881945	44881946	chr22:44881946:G:T	rs4392353	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	6.163945085190828	CTCGTAAAA
chr22	45010631	45010632	chr22:45010632:T:C	rs6007410	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr22	45127442	45127443	chr22:45127443:T:G	rs73167234	T	G	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr22	45173104	45173105	chr22:45173105:A:G	rs132884	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr22	45317849	45317850	chr22:45317850:G:A	rs6007585	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr22	45573841	45573842	chr22:45573842:G:A	rs13057220	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr22	46077797	46077798	chr22:46077798:C:T	rs112796640	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr22	46525162	46525163	chr22:46525163:T:C	rs4823556	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	6.906634116835357	2.9286541425171215	GCCGTAAAC
chr22	46614393	46614394	chr22:46614394:C:T	rs77567966	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr22	46750808	46750809	chr22:46750809:A:G	rs8141632	A	G	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr22	47049864	47049865	chr22:47049865:A:G	rs131917	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr22	47049876	47049877	chr22:47049877:A:G	rs131918	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.698915159352956	0.8304725977563606	CCCGTAAAA
chr22	47229641	47229642	chr22:47229642:A:G	rs7287866	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr22	47278612	47278613	chr22:47278613:C:T	rs73172540	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr22	47574436	47574437	chr22:47574437:G:C	rs5767812	G	C	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr22	47593510	47593511	chr22:47593511:C:G	rs131101	C	G	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr22	47666834	47666835	chr22:47666835:C:A	rs16997322	C	A	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr22	48215275	48215276	chr22:48215276:G:A	rs8140762	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr22	48215303	48215304	chr22:48215304:T:C	rs8140892	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr22	48440229	48440230	chr22:48440230:A:G	rs9627347	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr22	48446641	48446642	chr22:48446642:A:G	rs8141092	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	8.420043757940196	1.8045007974963716	GTCATAAAA
chr22	48456750	48456751	chr22:48456751:C:T	rs8137943	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr22	48456774	48456775	chr22:48456775:C:T	rs12169429	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr22	48838176	48838177	chr22:48838177:T:G	rs28394478	T	G	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr22	48846012	48846013	chr22:48846013:C:G	rs4073896	C	G	-	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr22	48866987	48866988	chr22:48866988:T:C	rs4073481	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr22	48867027	48867028	chr22:48867028:T:C	rs116974058	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr22	49008236	49008237	chr22:49008237:A:G	rs4823966	A	G	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr22	49179246	49179247	chr22:49179247:A:G	rs12628449	A	G	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr22	49179260	49179261	chr22:49179261:G:A	rs12628213	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr22	49198648	49198649	chr22:49198649:G:A	rs2858581	G	A	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr22	49628254	49628255	chr22:49628255:A:G	rs5770601	A	G	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr22	49759754	49759755	chr22:49759755:A:T	rs6009869	A	T	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr22	49923697	49923698	chr22:49923698:C:T	rs9616210	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr22	50029357	50029358	chr22:50029358:A:G	rs13056270	A	G	a	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr22	50029373	50029374	chr22:50029374:C:A	rs35077426	C	A	c	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr22	50029396	50029397	chr22:50029397:A:G	rs9617054	A	G	-	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr22	50029444	50029445	chr22:50029445:A:G	rs11101957	A	G	-	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr22	50063200	50063201	chr22:50063201:G:T	rs3817812	G	T	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr22	50387906	50387907	chr22:50387907:C:T	rs8142016	C	T	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr22	50387907	50387908	chr22:50387908:G:A	rs76201378	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr22	50574539	50574540	chr22:50574540:C:T	rs201673605	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr22	50595410	50595411	chr22:50595411:C:G	rs7284429	C	G	-	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr22	50635464	50635465	chr22:50635465:C:G	rs5770964	C	G	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr3	284547	284548	chr3:284548:C:T	rs149938505	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr3	357235	357236	chr3:357236:G:A	rs9826896	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.087808497260832	7.202667727093368	GTCGTAAAC
chr3	357250	357251	chr3:357251:C:T	rs9841789	C	T	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr3	426099	426100	chr3:426100:C:G	rs2033518	C	G	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.994948769610968	GTCATAAAA
chr3	1202749	1202750	chr3:1202750:T:G	rs1499094	T	G	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr3	1514455	1514456	chr3:1514456:G:A	rs13321432	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr3	1616806	1616807	chr3:1616807:G:A	rs7620717	G	A	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr3	1616838	1616839	chr3:1616839:A:G	rs280121	A	G	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr3	1868042	1868043	chr3:1868043:G:A	rs9653977	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr3	2527352	2527353	chr3:2527353:G:A	rs7648280	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr3	4295028	4295029	chr3:4295029:A:C	rs310726	A	C	C	Hoxd9.mouse_homeodomain_3	1	1	-	9.305184528107661	7.176266619256224	GTCGTAAAA
chr3	4980788	4980789	chr3:4980789:G:A	rs995393302	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	5138765	5138766	chr3:5138766:A:G	rs2291865	A	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr3	5344449	5344450	chr3:5344450:A:G	rs61004545	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr3	5464667	5464668	chr3:5464668:G:A	rs73810143	G	A	g	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr3	5656722	5656723	chr3:5656723:G:A	rs1452716	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr3	6564878	6564879	chr3:6564879:A:G	rs56247305	A	G	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr3	6574798	6574799	chr3:6574799:T:C	rs112533034	T	C	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr3	6631418	6631419	chr3:6631419:G:A	rs6783622	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	6964396	6964397	chr3:6964397:A:G	rs62235454	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr3	7131314	7131315	chr3:7131315:G:A	rs1878164	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr3	7249572	7249573	chr3:7249573:A:C	rs2136153	A	C	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr3	7518000	7518001	chr3:7518001:A:G	rs1145138	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	8.420043757940196	1.5516011963436003	GTCATAAAA
chr3	7576222	7576223	chr3:7576223:A:G	rs1564841	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr3	7788996	7788997	chr3:7788997:T:C	rs13324601	T	C	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr3	7870957	7870958	chr3:7870958:G:T	rs9838153	G	T	T	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	3.5987518915749583	GTCATAAAA
chr3	8448331	8448332	chr3:8448332:T:C	rs358273	T	C	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr3	8555072	8555073	chr3:8555073:C:T	rs17049248	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr3	8954955	8954956	chr3:8954956:C:T	rs77319001	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	3.5987518915749583	CTCATAAAA
chr3	9308482	9308483	chr3:9308483:C:A	rs17050220	C	A	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr3	10026887	10026888	chr3:10026888:G:T	rs3846177	G	T	g	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	10447762	10447763	chr3:10447763:C:T	rs149619381	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	10979355	10979356	chr3:10979356:A:G	rs2930148	A	G	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr3	11509526	11509527	chr3:11509527:A:G	rs2442794	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr3	12194144	12194145	chr3:12194145:C:T	rs114938103	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr3	12316992	12316993	chr3:12316993:G:A	rs13433696	G	A	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr3	12557860	12557861	chr3:12557861:G:A	rs74763449	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr3	12560441	12560442	chr3:12560442:G:A	rs2596820	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	12706190	12706191	chr3:12706191:T:C	rs9868500	T	C	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr3	12958439	12958440	chr3:12958440:T:C	rs1529755	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr3	13099334	13099335	chr3:13099335:A:C	rs360749	A	C	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr3	13483720	13483721	chr3:13483721:C:G	rs539065799	C	G	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr3	13598581	13598582	chr3:13598582:G:A	rs68144737	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr3	13793509	13793510	chr3:13793510:C:T	rs13082214	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr3	13887740	13887741	chr3:13887741:C:G	rs73023659	C	G	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr3	14434948	14434949	chr3:14434949:A:G	rs2164576	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr3	15811085	15811086	chr3:15811086:T:A	rs9848007	T	A	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr3	16456964	16456965	chr3:16456965:T:G	rs116076708	T	G	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	6.2381582116456675	GTCATAAAA
chr3	17012006	17012007	chr3:17012007:A:G	rs4602367	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	17077417	17077418	chr3:17077418:T:C	rs4685425	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr3	17810898	17810899	chr3:17810899:C:G	rs966398146	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	1.8598762650360374	GTCATAAAA
chr3	18075891	18075892	chr3:18075892:A:G	rs17201070	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr3	19015887	19015888	chr3:19015888:C:A	rs7426697	C	A	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr3	19962118	19962119	chr3:19962119:T:G	rs4241539	T	G	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr3	20186439	20186440	chr3:20186440:A:T	rs182809411	A	T	.	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr3	20406724	20406725	chr3:20406725:C:T	rs533304180	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr3	20517559	20517560	chr3:20517560:A:G	rs661669	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	21852391	21852392	chr3:21852392:T:C	rs2673517	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr3	21886557	21886558	chr3:21886558:C:T	rs2670252	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	22118114	22118115	chr3:22118115:A:G	rs746926315	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr3	22821976	22821977	chr3:22821977:C:T	rs35342568	C	T	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr3	23668447	23668448	chr3:23668448:C:T	rs553154350	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr3	23740475	23740476	chr3:23740476:T:C	rs116574806	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr3	23740494	23740495	chr3:23740495:A:T	rs3816525	A	T	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr3	23845913	23845914	chr3:23845914:T:G	rs7615238	T	G	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr3	24128001	24128002	chr3:24128002:C:T	rs1868573	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr3	24299631	24299632	chr3:24299632:T:C	rs9842492	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	7.238869377514717	GTCATAAAA
chr3	24601128	24601129	chr3:24601129:G:A	rs116755504	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr3	24601131	24601132	chr3:24601132:A:G	rs1561078	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr3	24756123	24756124	chr3:24756124:G:T	rs13088027	G	T	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr3	25234924	25234925	chr3:25234925:G:A	rs6765179	G	A	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr3	25366959	25366960	chr3:25366960:G:A	rs9853460	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr3	25423644	25423645	chr3:25423645:A:T	rs922938	A	T	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr3	25522349	25522350	chr3:25522350:G:A	rs62235694	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr3	25537710	25537711	chr3:25537711:C:G	rs1286773	C	G	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr3	25584081	25584082	chr3:25584082:A:G	rs75726496	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr3	26920828	26920829	chr3:26920829:A:G	rs9842800	A	G	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr3	27467588	27467589	chr3:27467589:A:G	rs17019809	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr3	27523912	27523913	chr3:27523913:A:C	rs60653265	A	C	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr3	27595479	27595480	chr3:27595480:A:G	rs113710935	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr3	27657509	27657510	chr3:27657510:T:C	rs9882581	T	C	T	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr3	27779503	27779504	chr3:27779504:T:C	rs9838021	T	C	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr3	28099490	28099491	chr3:28099491:G:A	rs338607	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr3	28352865	28352866	chr3:28352866:A:T	rs9968098	A	T	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	5.867108747657061	GTCATAAAA
chr3	29384583	29384584	chr3:29384584:C:A	rs73040660	C	A	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	29734063	29734064	chr3:29734064:A:G	rs11718443	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	8.420043757940196	4.44206378362196	GTCATAAAA
chr3	29801734	29801735	chr3:29801735:C:G	rs4680729	C	G	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr3	30251062	30251063	chr3:30251063:A:G	rs12634894	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	8.880089539778433	2.011646978181838	CTCGTAAAA
chr3	30438952	30438953	chr3:30438953:A:G	rs6766785	A	G	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr3	30617626	30617627	chr3:30617627:C:T	rs9310938	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr3	31675526	31675527	chr3:31675527:A:G	rs1107643	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr3	31968828	31968829	chr3:31968829:G:C	chr3:31968829:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	32157797	32157798	chr3:32157798:G:A	rs7613007	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr3	32414722	32414723	chr3:32414723:G:A	rs115856930	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr3	32463717	32463718	chr3:32463718:C:G	rs342748	C	G	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr3	33915001	33915002	chr3:33915002:C:T	rs13080359	C	T	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr3	34989460	34989461	chr3:34989461:T:G	rs55742269	T	G	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.2900197045022255	CTCATAAAA
chr3	35255178	35255179	chr3:35255179:C:A	rs73828306	C	A	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr3	36677241	36677242	chr3:36677242:C:T	rs34992013	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	36677275	36677276	chr3:36677276:C:T	rs9882671	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr3	37236066	37236067	chr3:37236067:G:A	rs62244287	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr3	38998248	38998249	chr3:38998249:G:A	rs6805416	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr3	39160027	39160028	chr3:39160028:G:A	rs73071855	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr3	40576252	40576253	chr3:40576253:C:A	rs61347127	C	A	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr3	41133830	41133831	chr3:41133831:G:T	rs58183061	G	T	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr3	41364836	41364837	chr3:41364837:G:T	rs4544584	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.3623567608418075	GCCGTAAAA
chr3	42055280	42055281	chr3:42055281:C:A	rs146355807	C	A	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr3	42349744	42349745	chr3:42349745:C:A	rs33509	C	A	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr3	42487589	42487590	chr3:42487590:C:T	rs11718502	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr3	42725866	42725867	chr3:42725867:A:G	rs339731	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr3	43160142	43160143	chr3:43160143:G:A	rs62248679	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr3	43810981	43810982	chr3:43810982:G:A	rs114279366	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr3	45232650	45232651	chr3:45232651:A:G	rs6810350	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr3	45592341	45592342	chr3:45592342:G:A	rs267218	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	45636070	45636071	chr3:45636071:G:A	rs76308264	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr3	45636079	45636080	chr3:45636080:A:G	rs142891193	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr3	45948428	45948429	chr3:45948429:G:T	rs71325095	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr3	45948445	45948446	chr3:45948446:T:C	rs144366392	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.087808497260832	4.925234632349853	GTCGTAAAC
chr3	46392016	46392017	chr3:46392017:T:C	rs35260614	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr3	47250752	47250753	chr3:47250753:C:T	rs145850720	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr3	47250774	47250775	chr3:47250775:G:T	rs535414843	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr3	47512191	47512192	chr3:47512192:A:G	chr3:47512192:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr3	49411351	49411352	chr3:49411352:G:A	rs4855874	G	A	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr3	49411384	49411385	chr3:49411385:A:G	rs6777731	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr3	50620529	50620530	chr3:50620530:T:C	chr3:50620530:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr3	50626142	50626143	chr3:50626143:C:T	rs3792325	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	50671526	50671527	chr3:50671527:T:C	rs890480219	T	C	T	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr3	50671563	50671564	chr3:50671564:A:G	chr3:50671564:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr3	51937281	51937282	chr3:51937282:G:A	rs145537768	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr3	51939152	51939153	chr3:51939153:G:A	rs323901	G	A	g	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr3	52264969	52264970	chr3:52264970:T:C	rs6793317	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr3	52535932	52535933	chr3:52535933:C:T	rs60611300	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	52882346	52882347	chr3:52882347:C:T	rs2336667	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	53891329	53891330	chr3:53891330:T:C	chr3:53891330:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr3	54705983	54705984	chr3:54705984:C:A	rs550210	C	A	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr3	55028824	55028825	chr3:55028825:C:T	rs358055	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr3	55296161	55296162	chr3:55296162:C:T	rs1827522	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr3	55296172	55296173	chr3:55296173:A:G	rs145168931	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr3	55428141	55428142	chr3:55428142:C:T	rs6445740	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	55573600	55573601	chr3:55573601:G:A	rs4538346	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr3	56106422	56106423	chr3:56106423:G:A	rs9855836	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr3	57120849	57120850	chr3:57120850:C:T	rs1872942	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr3	58063663	58063664	chr3:58063664:A:C	rs1658347	A	C	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	58063665	58063666	chr3:58063666:A:G	rs959545087	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr3	58825210	58825211	chr3:58825211:G:A	rs773233378	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr3	59451935	59451936	chr3:59451936:T:C	rs17060718	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr3	59771745	59771746	chr3:59771746:C:G	rs492234	C	G	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr3	59771757	59771758	chr3:59771758:G:A	rs49413	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr3	60076298	60076299	chr3:60076299:G:A	rs13100563	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr3	60388868	60388869	chr3:60388869:G:A	rs6801889	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr3	60453120	60453121	chr3:60453121:C:T	rs398105	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr3	60746265	60746266	chr3:60746266:C:A	rs6783059	C	A	A	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	6.658390371099818	GTCATAAAA
chr3	60791869	60791870	chr3:60791870:G:A	rs74542322	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	60954362	60954363	chr3:60954363:C:T	rs56037623	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr3	61527903	61527904	chr3:61527904:G:T	rs75733073	G	T	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr3	61734798	61734799	chr3:61734799:C:G	rs77968518	C	G	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr3	61895062	61895063	chr3:61895063:C:T	rs142479745	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr3	62001935	62001936	chr3:62001936:C:T	rs28736320	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr3	62655109	62655110	chr3:62655110:T:C	rs78351904	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr3	63762924	63762925	chr3:63762925:T:C	rs62253794	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr3	63999639	63999640	chr3:63999640:A:G	rs77203794	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr3	64164012	64164013	chr3:64164013:G:C	rs17720962	G	C	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr3	64368956	64368957	chr3:64368957:G:A	rs112906625	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr3	64397244	64397245	chr3:64397245:A:G	rs186858025	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr3	64945110	64945111	chr3:64945111:C:A	rs74526582	C	A	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr3	65062669	65062670	chr3:65062670:G:A	rs6445448	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr3	65062687	65062688	chr3:65062688:T:C	rs6445449	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr3	65633836	65633837	chr3:65633837:T:G	rs9828928	T	G	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.662713508931605	5.480827962637079	CTCGTAAAC
chr3	65756445	65756446	chr3:65756446:C:T	rs6780681	C	T	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr3	66014614	66014615	chr3:66014615:A:G	rs4688632	A	G	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr3	66029236	66029237	chr3:66029237:G:A	rs28653378	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr3	66304969	66304970	chr3:66304970:A:G	rs144633428	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr3	66414761	66414762	chr3:66414762:G:C	rs76493745	G	C	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr3	66499533	66499534	chr3:66499534:A:C	rs9848259	A	C	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr3	66503752	66503753	chr3:66503753:T:C	rs6549153	T	C	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr3	67034595	67034596	chr3:67034596:C:T	rs72911602	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr3	67451008	67451009	chr3:67451009:A:T	rs13067498	A	T	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr3	67490157	67490158	chr3:67490158:G:A	rs73088910	G	A	G	Hoxd9.mouse_homeodomain_3	1	1	-	8.124010147682185	9.305184528107661	GCCGTAAAA
chr3	67587141	67587142	chr3:67587142:A:C	rs59116776	A	C	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr3	68085017	68085018	chr3:68085018:A:G	rs6781549	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr3	68937339	68937340	chr3:68937340:A:T	rs6787117	A	T	T	Hoxd9.mouse_homeodomain_3	5	1	+	8.124010147682185	7.051258975802436	GCCGTAAAA
chr3	69282472	69282473	chr3:69282473:T:G	rs7651515	T	G	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr3	69449029	69449030	chr3:69449030:G:C	rs6790395	G	C	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	69872233	69872234	chr3:69872234:G:A	rs9840417	G	A	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr3	70612910	70612911	chr3:70612911:C:T	rs78644443	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr3	71078339	71078340	chr3:71078340:A:T	rs1288973	A	T	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr3	71372896	71372897	chr3:71372897:G:A	rs55869376	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr3	71436531	71436532	chr3:71436532:C:T	rs140039959	C	T	.	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr3	72152934	72152935	chr3:72152935:C:T	rs112249582	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr3	72152944	72152945	chr3:72152945:G:C	rs74797716	G	C	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr3	72310592	72310593	chr3:72310593:T:C	rs11927827	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	8.232433356227913	4.254453381909677	GTCGTTAAA
chr3	73565873	73565874	chr3:73565874:A:G	rs966021252	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr3	73746890	73746891	chr3:73746891:G:A	rs62246220	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr3	75737229	75737230	chr3:75737230:T:C	rs3009024	T	C	t	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr3	77940543	77940544	chr3:77940544:C:A	rs1480935257	C	A	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr3	78109300	78109301	chr3:78109301:T:A	rs188311397	T	A	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr3	78537481	78537482	chr3:78537482:G:A	rs6548583	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr3	79248231	79248232	chr3:79248232:C:T	rs78104326	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr3	79366500	79366501	chr3:79366501:A:G	rs62259738	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr3	81182163	81182164	chr3:81182164:G:T	rs68123494	G	T	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr3	81419426	81419427	chr3:81419427:G:T	chr3:81419427:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr3	81597223	81597224	chr3:81597224:T:A	rs6768592	T	A	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr3	83734458	83734459	chr3:83734459:G:A	rs7631136	G	A	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr3	83873566	83873567	chr3:83873567:C:T	rs61145765	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr3	85133131	85133132	chr3:85133132:T:C	rs7646739	T	C	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr3	85564322	85564323	chr3:85564323:C:T	rs2326320	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr3	86147486	86147487	chr3:86147487:A:C	rs28628150	A	C	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	7.202667727093368	GTCATAAAA
chr3	87175939	87175940	chr3:87175940:C:T	rs56269018	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.124010147682185	6.73017029686311	GCCGTAAAA
chr3	87311513	87311514	chr3:87311514:T:C	rs76107227	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr3	87376138	87376139	chr3:87376139:T:C	rs6770668	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr3	88263965	88263966	chr3:88263966:A:G	rs7647666	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr3	88298411	88298412	chr3:88298412:G:A	rs2199016	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr3	89001298	89001299	chr3:89001299:G:A	rs148712686	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	6.305075308533882	CCCGTAAAA
chr3	89654287	89654288	chr3:89654288:T:C	rs75581154	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr3	89654324	89654325	chr3:89654325:G:A	rs116451939	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr3	95458541	95458542	chr3:95458542:G:A	rs7633906	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr3	95459593	95459594	chr3:95459594:C:T	rs4524280	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr3	96281133	96281134	chr3:96281134:A:C	rs7631393	A	C	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr3	97825483	97825484	chr3:97825484:T:C	rs4524221	T	C	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr3	97911342	97911343	chr3:97911343:C:T	rs141230757	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr3	97991387	97991388	chr3:97991388:G:C	rs922658750	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	1.2471708749945272	CTCGTTAAA
chr3	97991394	97991395	chr3:97991395:C:T	rs191252552	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr3	98534044	98534045	chr3:98534045:C:G	rs16839907	C	G	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr3	98818145	98818146	chr3:98818146:C:T	rs9873932	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr3	99440302	99440303	chr3:99440303:T:C	rs6804624	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr3	99440307	99440308	chr3:99440308:A:G	rs77906901	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	101837159	101837160	chr3:101837160:G:A	rs991113486	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr3	101994996	101994997	chr3:101994997:A:C	rs10936874	A	C	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr3	102037613	102037614	chr3:102037614:A:G	rs12633738	A	G	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr3	102180199	102180200	chr3:102180200:C:T	rs62272113	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr3	102180210	102180211	chr3:102180211:G:A	rs73863459	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr3	102712892	102712893	chr3:102712893:C:T	rs4856130	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr3	103541165	103541166	chr3:103541166:G:A	rs75509272	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr3	104158832	104158833	chr3:104158833:A:G	rs1882005	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	8.124010147682185	1.5084671872383608	GCCGTAAAA
chr3	105285067	105285068	chr3:105285068:C:T	rs9865072	C	T	c	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr3	105285072	105285073	chr3:105285073:A:G	rs1716142	A	G	A	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr3	105315799	105315800	chr3:105315800:G:A	rs4894830	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr3	105867869	105867870	chr3:105867870:T:C	rs9657904	T	C	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr3	105907917	105907918	chr3:105907918:C:T	rs145906957	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr3	106071731	106071732	chr3:106071732:G:A	rs77352841	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr3	107525497	107525498	chr3:107525498:C:T	chr3:107525498:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr3	107683745	107683746	chr3:107683746:T:C	rs542649399	T	C	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr3	107976655	107976656	chr3:107976656:G:T	rs17826288	G	T	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr3	108016795	108016796	chr3:108016796:C:G	rs78276533	C	G	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr3	108345493	108345494	chr3:108345494:C:T	rs6805570	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr3	109743974	109743975	chr3:109743975:G:A	rs78502662	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr3	111456120	111456121	chr3:111456121:G:A	rs2698349	G	A	g	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr3	111823953	111823954	chr3:111823954:G:T	rs4411859	G	T	g	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr3	112097460	112097461	chr3:112097461:C:T	rs966032	C	T	T	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr3	113132667	113132668	chr3:113132668:G:A	rs12695288	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr3	113278877	113278878	chr3:113278878:T:G	rs13066489	T	G	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr3	114128260	114128261	chr3:114128261:T:C	rs9817063	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr3	114746010	114746011	chr3:114746011:C:T	rs9826148	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr3	115402909	115402910	chr3:115402910:C:T	rs9833958	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr3	116392800	116392801	chr3:116392801:C:T	rs9827984	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr3	116931953	116931954	chr3:116931954:C:T	rs1133604	C	T	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr3	118534621	118534622	chr3:118534622:G:A	rs6807699	G	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr3	118688734	118688735	chr3:118688735:A:C	rs75030465	A	C	A	Hoxd9.mouse_homeodomain_3	6	1	+	7.37702088702296	3.6720918219142176	CTCGTAAAG
chr3	120393615	120393616	chr3:120393616:C:T	rs34805176	C	T	c	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr3	120393636	120393637	chr3:120393637:C:G	rs1147693	C	G	g	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	4.433755159345364	CTCGTAAAT
chr3	120679246	120679247	chr3:120679247:G:C	rs144393595	G	C	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr3	122032683	122032684	chr3:122032684:T:C	rs1962532	T	C	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr3	122386768	122386769	chr3:122386769:G:A	rs28630628	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr3	123620707	123620708	chr3:123620708:C:T	rs565233007	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr3	124582632	124582633	chr3:124582633:G:A	rs62267588	G	A	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr3	124951779	124951780	chr3:124951780:C:A	rs28398387	C	A	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr3	125216223	125216224	chr3:125216224:C:G	rs28776173	C	G	c	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr3	125350950	125350951	chr3:125350951:A:G	rs114523508	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr3	125653827	125653828	chr3:125653828:C:T	rs6775957	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr3	125763586	125763587	chr3:125763587:C:T	rs2735244	C	T	.	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr3	126299441	126299442	chr3:126299442:T:C	rs2363935	T	C	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	126497306	126497307	chr3:126497307:C:G	rs17691504	C	G	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr3	126497340	126497341	chr3:126497341:T:C	rs10512665	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr3	126497351	126497352	chr3:126497352:C:T	rs115957934	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr3	126812745	126812746	chr3:126812746:G:A	rs76445657	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr3	127047725	127047726	chr3:127047726:T:C	rs9883812	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.994948769610968	1.3794058091671437	CTCATAAAA
chr3	127193078	127193079	chr3:127193079:C:G	rs11707248	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	1.1387476664487979	CCCGTAAAA
chr3	127193079	127193080	chr3:127193080:G:A	rs79608224	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr3	127914699	127914700	chr3:127914700:G:A	rs13073655	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr3	127914732	127914733	chr3:127914733:C:G	rs113042266	C	G	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr3	128194144	128194145	chr3:128194145:G:A	rs2811511	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr3	128394468	128394469	chr3:128394469:A:G	rs78278710	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr3	128430746	128430747	chr3:128430747:A:G	rs2981030	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	128463534	128463535	chr3:128463535:G:A	rs13071640	G	A	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr3	128489809	128489810	chr3:128489810:A:G	rs146328303	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr3	128617625	128617626	chr3:128617626:G:A	rs568928278	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr3	129245772	129245773	chr3:129245773:G:C	rs111935563	G	C	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr3	131449109	131449110	chr3:131449110:T:G	rs4854624	T	G	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr3	131474235	131474236	chr3:131474236:C:T	rs9289388	C	T	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr3	132229195	132229196	chr3:132229196:C:A	rs73211958	C	A	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr3	132229198	132229199	chr3:132229199:T:C	rs16838951	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr3	132477516	132477517	chr3:132477517:C:T	rs62292949	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	133257313	133257314	chr3:133257314:T:C	rs12495802	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr3	134104173	134104174	chr3:134104174:G:T	rs1035746840	G	T	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr3	134332511	134332512	chr3:134332512:G:A	rs192138425	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr3	134496209	134496210	chr3:134496210:A:G	rs9815297	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	8.420043757940196	1.8045007974963716	GTCATAAAA
chr3	134708902	134708903	chr3:134708903:G:A	rs12695617	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr3	134708905	134708906	chr3:134708906:G:C	rs59457762	G	C	G	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr3	135652773	135652774	chr3:135652774:G:A	rs7640669	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr3	137138844	137138845	chr3:137138845:A:C	rs6790752	A	C	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr3	140020936	140020937	chr3:140020937:T:G	rs9844385	T	G	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr3	140178758	140178759	chr3:140178759:G:A	rs9811727	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr3	140740224	140740225	chr3:140740225:C:T	rs9861522	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr3	141422125	141422126	chr3:141422126:C:T	rs9846396	C	T	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr3	142598506	142598507	chr3:142598507:A:G	rs11709900	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.176266619256224	0.5607236588124002	GGCGTAAAA
chr3	143977370	143977371	chr3:143977371:G:A	rs28694285	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr3	145015471	145015472	chr3:145015472:C:T	rs12490662	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	7.026203907121121	GTCATAAAA
chr3	145209707	145209708	chr3:145209708:G:A	rs9875413	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	145411656	145411657	chr3:145411657:G:A	rs1585943	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr3	145411678	145411679	chr3:145411679:G:T	rs344965	G	T	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr3	145693872	145693873	chr3:145693873:C:G	rs6770224	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	4.652056374847974	CTCGTTAAA
chr3	145799451	145799452	chr3:145799452:C:T	rs9875815	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr3	145799456	145799457	chr3:145799457:T:A	rs140073618	T	A	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	1.1265062080143724	CTCATAAAA
chr3	146422049	146422050	chr3:146422050:A:G	rs80256186	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr3	146682088	146682089	chr3:146682089:T:C	rs17370212	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr3	147155211	147155212	chr3:147155212:T:G	rs1910107	T	G	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr3	147662002	147662003	chr3:147662003:G:A	rs2319332	G	A	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr3	147730828	147730829	chr3:147730829:A:G	rs73866497	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr3	149371098	149371099	chr3:149371099:A:G	rs114057789	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr3	149371137	149371138	chr3:149371138:A:T	rs9847293	A	T	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr3	149494337	149494338	chr3:149494338:G:C	rs4681516	G	C	C	Hoxd9.mouse_homeodomain_3	0	1	+	6.906634116835357	6.481539128506128	GCCGTAAAC
chr3	149494339	149494340	chr3:149494340:C:T	rs139744828	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr3	149908006	149908007	chr3:149908007:T:A	rs9836197	T	A	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr3	151087385	151087386	chr3:151087386:C:G	rs12635773	C	G	C	Hoxd9.mouse_homeodomain_3	8	1	+	8.087808497260832	7.802115875352188	GTCGTAAAC
chr3	151087389	151087390	chr3:151087390:T:A	rs114050142	T	A	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr3	151183241	151183242	chr3:151183242:T:C	rs16863223	T	C	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	151790047	151790048	chr3:151790048:T:C	rs16863667	T	C	-	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	1.1265062080143724	CTCATAAAA
chr3	151790070	151790071	chr3:151790071:T:C	rs17204690	T	C	-	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr3	152150661	152150662	chr3:152150662:T:G	rs630500	T	G	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr3	152153495	152153496	chr3:152153496:C:T	rs2642007	C	T	c	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr3	152320293	152320294	chr3:152320294:G:A	rs147131532	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr3	152443065	152443066	chr3:152443066:T:A	rs3796273	T	A	T	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr3	153349069	153349070	chr3:153349070:T:C	rs6791558	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr3	153349079	153349080	chr3:153349080:G:A	rs6778690	G	A	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr3	153753846	153753847	chr3:153753847:C:T	rs569147	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr3	154152462	154152463	chr3:154152463:C:T	rs2044757	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr3	155329541	155329542	chr3:155329542:T:G	rs9829238	T	G	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr3	156609218	156609219	chr3:156609219:T:G	rs139457677	T	G	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr3	156617728	156617729	chr3:156617729:G:A	rs138270237	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr3	156835456	156835457	chr3:156835457:A:G	rs344077	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.176266619256224	4.013692754345243	GGCGTAAAA
chr3	157220405	157220406	chr3:157220406:C:G	rs7626589	C	G	c	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	1.0288696594919167	CTCGTAAAT
chr3	157220426	157220427	chr3:157220427:A:G	rs7648599	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr3	157926970	157926971	chr3:157926971:G:T	rs9812142	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.615367500182583	CTCGTAAAG
chr3	157978467	157978468	chr3:157978468:T:A	rs9863442	T	A	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr3	158370693	158370694	chr3:158370694:G:C	rs73017444	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	1.4347812767068095	CTCATAAAA
chr3	158675010	158675011	chr3:158675011:G:A	rs9839476	G	A	g	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr3	158768910	158768911	chr3:158768911:A:G	rs3863076	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr3	158768921	158768922	chr3:158768922:A:G	rs150369903	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr3	158791385	158791386	chr3:158791386:C:T	rs141827971	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr3	158876303	158876304	chr3:158876304:G:C	rs13099040	G	C	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr3	160398785	160398786	chr3:160398786:A:G	chr3:160398786:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr3	160465122	160465123	chr3:160465123:C:G	rs4680586	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	2.745017035203504	GTCGTAAAA
chr3	160880002	160880003	chr3:160880003:C:G	rs1348976	C	G	G	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.994948769610968	GTCATAAAA
chr3	161037919	161037920	chr3:161037920:G:A	rs6809206	G	A	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr3	162286468	162286469	chr3:162286469:G:A	rs13100513	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr3	162286484	162286485	chr3:162286485:C:A	rs9883161	C	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	7.37702088702296	7.189980196898917	CTCGTAAAG
chr3	163547485	163547486	chr3:163547486:T:C	rs2125956	T	C	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr3	163837474	163837475	chr3:163837475:A:T	rs7632650	A	T	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr3	164237118	164237119	chr3:164237119:G:A	rs13096670	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.8073383678986845	3.411141489862676	CTCGTTAAA
chr3	165836432	165836433	chr3:165836433:A:G	rs4599347	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr3	166478070	166478071	chr3:166478071:G:T	rs1579038	G	T	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr3	166478074	166478075	chr3:166478075:T:C	rs1579039	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.420043757940196	1.5516011963436003	GTCATAAAA
chr3	167253275	167253276	chr3:167253276:G:C	rs114291726	G	C	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr3	167978385	167978386	chr3:167978386:C:A	rs4431164	C	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr3	168140646	168140647	chr3:168140647:G:A	rs34597113	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.014132140725302	6.620292289906229	GTCGTAAAT
chr3	168362299	168362300	chr3:168362300:C:T	rs16852197	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr3	168847379	168847380	chr3:168847380:G:A	rs9820658	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr3	169112988	169112989	chr3:169112989:G:A	rs74516251	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr3	170599282	170599283	chr3:170599283:G:A	rs75971282	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr3	171171351	171171352	chr3:171171352:G:A	rs35571716	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr3	171207961	171207962	chr3:171207962:T:C	rs111728482	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	1.1265062080143724	CTCATAAAA
chr3	171248717	171248718	chr3:171248718:A:C	rs7615457	A	C	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr3	171731932	171731933	chr3:171731933:A:T	rs4894754	A	T	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr3	171802039	171802040	chr3:171802040:C:T	rs112496157	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr3	171828937	171828938	chr3:171828938:G:A	rs960069137	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr3	174125889	174125890	chr3:174125890:G:A	rs9874304	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr3	174211114	174211115	chr3:174211115:A:G	rs6781379	A	G	a	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr3	174690394	174690395	chr3:174690395:T:C	rs651791	T	C	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr3	175002944	175002945	chr3:175002945:T:C	rs9849027	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr3	175434571	175434572	chr3:175434572:T:A	rs375397997	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	176914804	176914805	chr3:176914805:A:C	rs74827785	A	C	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr3	177688275	177688276	chr3:177688276:A:G	rs6803889	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr3	178063784	178063785	chr3:178063785:T:C	rs9836490	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr3	178146903	178146904	chr3:178146904:A:G	rs1844388	A	G	G	Hoxd9.mouse_homeodomain_3	5	1	+	7.698915159352956	1.0833721989091325	CCCGTAAAA
chr3	178526667	178526668	chr3:178526668:G:A	rs922384	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr3	179247880	179247881	chr3:179247881:C:T	rs57620676	C	T	.	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr3	179324127	179324128	chr3:179324128:G:A	rs73043415	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr3	179828262	179828263	chr3:179828263:A:G	rs1398094	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	183977047	183977048	chr3:183977048:T:C	rs1341582883	T	C	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr3	184595722	184595723	chr3:184595723:C:T	rs7623495	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr3	185068249	185068250	chr3:185068250:T:C	rs554810440	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr3	185094627	185094628	chr3:185094628:C:T	rs13321350	C	T	G	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr3	185309198	185309199	chr3:185309199:A:G	rs9830680	A	G	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr3	186411026	186411027	chr3:186411027:A:G	rs56233426	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr3	186631083	186631084	chr3:186631084:C:T	rs4686791	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	186743301	186743302	chr3:186743302:G:A	rs5030093	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr3	186923422	186923423	chr3:186923423:C:A	rs9810189	C	A	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr3	186924236	186924237	chr3:186924237:G:C	rs182533567	G	C	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr3	186932772	186932773	chr3:186932773:C:T	rs73187734	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr3	187040206	187040207	chr3:187040207:A:T	rs2268532	A	T	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr3	187912938	187912939	chr3:187912939:A:G	rs11711595	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr3	188162297	188162298	chr3:188162298:C:G	rs1711002	C	G	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr3	188231183	188231184	chr3:188231184:G:A	rs1871518	G	A	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr3	188283050	188283051	chr3:188283051:T:A	rs7614199	T	A	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr3	188366198	188366199	chr3:188366199:C:T	rs76211316	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	6.195197301577001	CTCGTAAAT
chr3	188951302	188951303	chr3:188951303:T:G	rs574177665	T	G	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.420043757940196	6.149902535056951	GTCATAAAA
chr3	189161179	189161180	chr3:189161180:C:T	rs6444357	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	8.420043757940196	GTCGTAAAA
chr3	189686259	189686260	chr3:189686260:A:T	rs6797174	A	T	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr3	189740416	189740417	chr3:189740417:T:A	rs6765015	T	A	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr3	190570375	190570376	chr3:190570376:T:C	rs75392769	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr3	190605489	190605490	chr3:190605490:C:T	rs73060200	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr3	190962972	190962973	chr3:190962973:C:T	rs73195764	C	T	c	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr3	190972838	190972839	chr3:190972839:G:T	rs7647624	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr3	191144070	191144071	chr3:191144071:A:G	rs1551425	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr3	193350947	193350948	chr3:193350948:A:G	rs1038718	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr3	193521052	193521053	chr3:193521053:G:A	rs13082545	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr3	194068941	194068942	chr3:194068942:A:G	rs73201434	A	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr3	194206264	194206265	chr3:194206265:G:A	rs79973845	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr3	194287191	194287192	chr3:194287192:T:C	rs4597664	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr3	194353093	194353094	chr3:194353094:C:A	rs34234514	C	A	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr3	194972132	194972133	chr3:194972133:G:A	rs1356359	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr3	194972144	194972145	chr3:194972145:A:C	rs6437444	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	8.420043757940196	5.254136976905022	GTCATAAAA
chr3	195210656	195210657	chr3:195210657:C:T	rs987691312	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr3	195263415	195263416	chr3:195263416:A:C	rs139798547	A	C	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr3	195535469	195535470	chr3:195535470:G:A	rs823508	G	A	.	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr3	195700904	195700905	chr3:195700905:T:C	rs1874020	T	C	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr3	196755029	196755030	chr3:196755030:C:T	rs79382248	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr3	196835391	196835392	chr3:196835392:A:G	rs76047509	A	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr3	197354924	197354925	chr3:197354925:G:A	rs6779852	G	A	a	Hoxd9.mouse_homeodomain_3	2	1	-	6.906634116835357	5.512794266016282	GCCGTAAAC
chr3	197409528	197409529	chr3:197409529:C:T	rs73891882	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr4	580870	580871	chr4:580871:C:T	rs10024575	C	T	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr4	1110089	1110090	chr4:1110090:T:C	rs115207016	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr4	1234265	1234266	chr4:1234266:G:A	rs3892033	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr4	2904557	2904558	chr4:2904558:A:G	rs2285084	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.662713508931605	6.481539128506128	CTCGTAAAC
chr4	3083749	3083750	chr4:3083750:G:A	rs28867436	G	A	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr4	3335078	3335079	chr4:3335079:A:G	rs34849917	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr4	4241626	4241627	chr4:4241627:C:T	rs76794256	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr4	4517604	4517605	chr4:4517605:T:C	rs16835806	T	C	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr4	4673137	4673138	chr4:4673138:A:T	rs58500497	A	T	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr4	4673150	4673151	chr4:4673151:C:G	chr4:4673151:C:G	C	G	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	4673151	4673152	chr4:4673152:C:A	rs114507340	C	A	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr4	5655866	5655867	chr4:5655867:G:A	rs78737139	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr4	5688146	5688147	chr4:5688147:G:C	rs4689277	G	C	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr4	5839934	5839935	chr4:5839935:T:C	rs13125595	T	C	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr4	5839949	5839950	chr4:5839950:C:G	rs114551941	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	5.537766856603679	ATCGTAAAA
chr4	5927021	5927022	chr4:5927022:G:A	rs10937694	G	A	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr4	6429691	6429692	chr4:6429692:C:G	rs10516180	C	G	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr4	6674052	6674053	chr4:6674053:T:C	rs4689031	T	C	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr4	6698292	6698293	chr4:6698293:C:T	rs73798342	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	8.420043757940196	GTCGTAAAA
chr4	6986909	6986910	chr4:6986910:A:G	rs35809432	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr4	6987035	6987036	chr4:6987036:C:G	rs189916427	C	G	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr4	7748359	7748360	chr4:7748360:C:G	rs13117963	C	G	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr4	7783706	7783707	chr4:7783707:T:C	rs764850934	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr4	7783707	7783708	chr4:7783708:A:G	rs117197464	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr4	7790285	7790286	chr4:7790286:G:C	rs16841259	G	C	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr4	7978081	7978082	chr4:7978082:G:A	rs79485592	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr4	8100053	8100054	chr4:8100054:G:A	rs16841707	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr4	8100067	8100068	chr4:8100068:G:C	rs4631023	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.589037152396075	8.014132140725302	CTCGTAAAT
chr4	8241904	8241905	chr4:8241905:G:T	rs754490403	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr4	8599653	8599654	chr4:8599654:A:G	rs7671320	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr4	8618295	8618296	chr4:8618296:G:A	rs6447885	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr4	8646673	8646674	chr4:8646674:C:T	rs144723843	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr4	9147265	9147266	chr4:9147266:A:G	rs373877999	A	G	N	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr4	9509418	9509419	chr4:9509419:A:G	rs10939182	A	G	N	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr4	9692610	9692611	chr4:9692611:G:T	rs73802957	G	T	g	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr4	9692611	9692612	chr4:9692612:C:T	rs73802958	C	T	c	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr4	10300868	10300869	chr4:10300869:G:A	rs10014800	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	3.5987518915749583	CTCATAAAA
chr4	10833437	10833438	chr4:10833438:T:C	rs368883988	T	C	T	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr4	11436722	11436723	chr4:11436723:A:G	rs224485	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr4	11722411	11722412	chr4:11722412:A:G	rs73214362	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr4	11818767	11818768	chr4:11818768:G:A	rs7657243	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr4	11946031	11946032	chr4:11946032:C:A	rs28362097	C	A	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr4	12145888	12145889	chr4:12145889:G:C	rs1479265	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr4	12615949	12615950	chr4:12615950:G:T	rs35750289	G	T	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr4	12667513	12667514	chr4:12667514:A:T	rs28796289	A	T	T	Hoxd9.mouse_homeodomain_3	6	1	+	8.420043757940196	5.604333924062047	GTCATAAAA
chr4	12667527	12667528	chr4:12667528:G:A	rs59769599	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr4	13493987	13493988	chr4:13493988:G:A	rs76761657	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr4	13919492	13919493	chr4:13919493:G:A	rs13110945	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	3.5987518915749583	CTCATAAAA
chr4	14058702	14058703	chr4:14058703:C:T	rs79984385	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.232433356227913	6.838593505408839	GTCGTTAAA
chr4	14132460	14132461	chr4:14132461:A:G	rs62409947	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr4	15071972	15071973	chr4:15071973:A:C	rs192071159	A	C	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr4	15332534	15332535	chr4:15332535:G:A	rs73230952	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	6.906634116835357	6.021493346667889	GCCGTAAAC
chr4	15443908	15443909	chr4:15443909:C:T	rs2314590	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr4	15919186	15919187	chr4:15919187:G:T	rs16892583	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr4	16171900	16171901	chr4:16171901:C:T	rs6814370	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr4	16196754	16196755	chr4:16196755:A:G	rs10939652	A	G	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr4	16202769	16202770	chr4:16202770:C:T	rs73798871	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr4	17112268	17112269	chr4:17112269:G:A	rs58291726	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr4	17204923	17204924	chr4:17204924:A:G	rs12650417	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr4	17475314	17475315	chr4:17475315:T:G	rs7692899	T	G	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.8073383678986845	5.625452821604158	CTCGTTAAA
chr4	17512387	17512388	chr4:17512388:G:A	rs574480379	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr4	17618944	17618945	chr4:17618945:G:A	rs2159584	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr4	18571692	18571693	chr4:18571693:C:G	rs1477901	C	G	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	4.221738893972249	CTCGTAAAG
chr4	19309379	19309380	chr4:19309380:G:A	rs113010190	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr4	20263911	20263912	chr4:20263912:T:C	rs7664347	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr4	20297847	20297848	chr4:20297848:T:C	rs114619321	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr4	20312068	20312069	chr4:20312069:T:C	rs1027876312	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr4	21132192	21132193	chr4:21132193:C:G	rs6448020	C	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr4	21464908	21464909	chr4:21464909:C:T	rs62295501	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr4	22683968	22683969	chr4:22683969:G:C	rs12512285	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr4	24266020	24266021	chr4:24266021:A:G	rs16875481	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr4	24552546	24552547	chr4:24552547:G:A	rs58666069	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr4	25310734	25310735	chr4:25310735:A:G	rs1533132	A	G	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr4	25310774	25310775	chr4:25310775:G:A	rs35565436	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	25702788	25702789	chr4:25702789:A:T	rs62409449	A	T	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	5.442013759327832	CTCATAAAA
chr4	25900437	25900438	chr4:25900438:T:A	rs34872542	T	A	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr4	25900479	25900480	chr4:25900480:A:G	rs116604842	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr4	25907296	25907297	chr4:25907297:A:G	rs6818008	A	G	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	26002279	26002280	chr4:26002280:G:A	rs6818313	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr4	26086862	26086863	chr4:26086863:A:G	rs17630525	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr4	27438689	27438690	chr4:27438690:G:A	rs210750	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr4	29277700	29277701	chr4:29277701:C:A	rs77354988	C	A	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr4	29937281	29937282	chr4:29937282:C:T	rs73211227	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr4	29937282	29937283	chr4:29937283:G:A	rs11932945	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	6.305075308533882	CCCGTAAAA
chr4	30093599	30093600	chr4:30093600:C:T	rs4594684	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr4	30426265	30426266	chr4:30426266:C:T	rs6823684	C	T	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr4	30957968	30957969	chr4:30957969:A:G	rs61795888	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr4	31059938	31059939	chr4:31059939:C:G	rs66982156	C	G	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr4	31374643	31374644	chr4:31374644:A:G	rs140706570	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr4	31964883	31964884	chr4:31964884:C:T	rs28607914	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr4	32150011	32150012	chr4:32150012:T:C	rs113224832	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr4	32791309	32791310	chr4:32791310:A:T	rs7667944	A	T	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr4	35494557	35494558	chr4:35494558:G:T	rs7692154	G	T	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr4	35525449	35525450	chr4:35525450:A:C	rs7677227	A	C	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr4	35963516	35963517	chr4:35963517:A:G	rs1714098	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr4	36404154	36404155	chr4:36404155:T:C	rs924536	T	C	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr4	36488984	36488985	chr4:36488985:T:C	rs181080156	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr4	37527545	37527546	chr4:37527546:A:G	rs2973288	A	G	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr4	37994677	37994678	chr4:37994678:T:C	rs7665468	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr4	38610735	38610736	chr4:38610736:A:C	rs1962053	A	C	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr4	38801022	38801023	chr4:38801023:A:G	rs5743595	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr4	38805229	38805230	chr4:38805230:A:G	rs5743556	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr4	40046608	40046609	chr4:40046609:G:A	rs17511619	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	8.232433356227913	6.838593505408839	GTCGTTAAA
chr4	40119169	40119170	chr4:40119170:A:T	rs2055821	A	T	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr4	40144376	40144377	chr4:40144377:T:C	rs28538731	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr4	40144390	40144391	chr4:40144391:G:T	rs76512387	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.543531141267286	GTCGTAAAA
chr4	40261515	40261516	chr4:40261516:C:T	rs11734992	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr4	40514600	40514601	chr4:40514601:A:C	rs182656968	A	C	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr4	40661686	40661687	chr4:40661687:C:T	rs7437008	C	T	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr4	41358212	41358213	chr4:41358213:A:T	rs113104788	A	T	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr4	41443143	41443144	chr4:41443144:T:G	rs7697365	T	G	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr4	41568683	41568684	chr4:41568684:C:T	rs34218605	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr4	41884456	41884457	chr4:41884457:G:A	rs60368588	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr4	42493096	42493097	chr4:42493097:T:C	rs116166436	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr4	43131888	43131889	chr4:43131889:T:A	rs7664083	T	A	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr4	43330647	43330648	chr4:43330648:G:C	rs141873809	G	C	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr4	43673523	43673524	chr4:43673524:T:G	rs1441763519	T	G	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.77757273876414	CTCATAAAA
chr4	43673525	43673526	chr4:43673526:T:C	rs1307418164	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.016968795292732	CTCATAAAA
chr4	44234390	44234391	chr4:44234391:A:G	rs7699496	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr4	44775187	44775188	chr4:44775188:G:A	rs7698973	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr4	45079824	45079825	chr4:45079825:C:A	rs4432781	C	A	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	47211147	47211148	chr4:47211148:A:G	rs4695200	A	G	G	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr4	47363962	47363963	chr4:47363963:T:C	rs1027207378	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.994948769610968	1.3794058091671437	CTCATAAAA
chr4	47625575	47625576	chr4:47625576:T:C	rs2351786	T	C	C	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.016968795292732	CTCATAAAA
chr4	47851825	47851826	chr4:47851826:T:C	rs6822668	T	C	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr4	52367131	52367132	chr4:52367132:C:G	rs6841896	C	G	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr4	52407775	52407776	chr4:52407776:C:T	rs145358181	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr4	52861778	52861779	chr4:52861779:C:A	rs77419314	C	A	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	4.9827707047653504	CCCGTAAAA
chr4	52861784	52861785	chr4:52861785:T:G	rs76856111	T	G	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr4	53498505	53498506	chr4:53498506:T:C	rs2292578	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr4	54516791	54516792	chr4:54516792:C:T	rs528441968	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr4	55032812	55032813	chr4:55032813:G:T	rs62306413	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr4	55336336	55336337	chr4:55336337:G:T	rs74834311	G	T	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr4	55361851	55361852	chr4:55361852:A:G	rs7697835	A	G	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr4	55361873	55361874	chr4:55361874:G:A	rs7672647	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr4	55364951	55364952	chr4:55364952:C:T	rs7663650	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr4	55385441	55385442	chr4:55385442:T:C	rs78285264	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr4	55547903	55547904	chr4:55547904:C:T	rs7659053	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.124010147682185	6.73017029686311	GCCGTAAAA
chr4	55547922	55547923	chr4:55547923:A:G	rs79709223	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr4	56348605	56348606	chr4:56348606:C:T	rs7693137	C	T	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr4	57789756	57789757	chr4:57789757:A:G	rs1396813	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr4	58777204	58777205	chr4:58777205:C:T	rs12502176	C	T	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr4	59468104	59468105	chr4:59468105:T:C	rs67263081	T	C	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr4	59473759	59473760	chr4:59473760:G:A	rs77614278	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr4	59548704	59548705	chr4:59548705:C:T	rs12508522	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr4	62632113	62632114	chr4:62632114:A:G	rs6829413	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr4	62818839	62818840	chr4:62818840:A:T	rs28442201	A	T	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	63569520	63569521	chr4:63569521:G:A	rs11737623	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr4	64743481	64743482	chr4:64743482:A:G	rs1897146	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr4	65435163	65435164	chr4:65435164:C:A	rs4507418	C	A	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr4	65508316	65508317	chr4:65508317:A:G	rs58710076	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr4	65652683	65652684	chr4:65652684:A:G	rs72642684	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr4	66266093	66266094	chr4:66266094:C:T	rs13113516	C	T	C	Hoxd9.mouse_homeodomain_3	8	1	+	7.662713508931605	7.589037152396075	CTCGTAAAC
chr4	66266094	66266095	chr4:66266095:G:C	rs13111921	G	C	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr4	66275887	66275888	chr4:66275888:G:A	rs17082199	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr4	66582042	66582043	chr4:66582043:G:A	rs56296644	G	A	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr4	66963226	66963227	chr4:66963227:A:C	rs10518015	A	C	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr4	70601196	70601197	chr4:70601197:C:T	rs4694075	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr4	71753267	71753268	chr4:71753268:G:C	rs17830803	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr4	71860815	71860816	chr4:71860816:A:C	rs112236116	A	C	.	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr4	71923154	71923155	chr4:71923155:A:G	rs62318896	A	G	.	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr4	72418564	72418565	chr4:72418565:G:A	rs922739	G	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr4	72557357	72557358	chr4:72557358:T:G	rs2222220	T	G	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr4	72557360	72557361	chr4:72557361:T:G	rs2623532	T	G	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr4	72828793	72828794	chr4:72828794:T:C	rs315337	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr4	73895686	73895687	chr4:73895687:G:T	rs57173444	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr4	74289358	74289359	chr4:74289359:G:A	rs189886056	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr4	74738685	74738686	chr4:74738686:A:G	rs72867513	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr4	75509141	75509142	chr4:75509142:T:A	rs2306177	T	A	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr4	76007274	76007275	chr4:76007275:C:T	rs2276886	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	76589447	76589448	chr4:76589448:T:A	rs61090632	T	A	t	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr4	76894563	76894564	chr4:76894564:C:A	rs2645672	C	A	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr4	77381623	77381624	chr4:77381624:A:G	rs28711853	A	G	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	77826616	77826617	chr4:77826617:T:C	rs4365752	T	C	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr4	77849790	77849791	chr4:77849791:C:T	rs11730329	C	T	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr4	78495474	78495475	chr4:78495475:C:T	rs6825278	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr4	78614038	78614039	chr4:78614039:C:T	rs57415147	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr4	78774365	78774366	chr4:78774366:A:G	rs75260567	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr4	79528585	79528586	chr4:79528586:A:G	rs186103684	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr4	79552366	79552367	chr4:79552367:A:C	rs1837647	A	C	C	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	5.8130632233164405	CTCATAAAA
chr4	80059914	80059915	chr4:80059915:A:C	rs62300369	A	C	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr4	81085142	81085143	chr4:81085143:T:C	rs10002442	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr4	81135735	81135736	chr4:81135736:C:T	rs1002175692	C	T	G	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr4	81144411	81144412	chr4:81144412:A:T	rs7687935	A	T	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr4	82667389	82667390	chr4:82667390:C:G	rs11936888	C	G	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	8.420043757940196	CTCATAAAA
chr4	83526262	83526263	chr4:83526263:C:T	rs576707	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr4	84151816	84151817	chr4:84151817:C:T	rs1997478	C	T	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr4	84502899	84502900	chr4:84502900:C:T	rs4579107	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	7.026203907121121	GTCATAAAA
chr4	85681163	85681164	chr4:85681164:C:A	rs1026875	C	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr4	85681176	85681177	chr4:85681177:A:T	rs1026876	A	T	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr4	86174820	86174821	chr4:86174821:T:A	rs1903361	T	A	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr4	87395403	87395404	chr4:87395404:G:A	rs185342432	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr4	87395434	87395435	chr4:87395435:C:T	rs6816136	C	T	-	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr4	87680352	87680353	chr4:87680353:C:T	rs10022696	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr4	88109767	88109768	chr4:88109768:C:G	rs2622621	C	G	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr4	88138764	88138765	chr4:88138765:G:A	rs12641369	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr4	88831236	88831237	chr4:88831237:G:A	rs77162167	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr4	88970046	88970047	chr4:88970047:T:C	rs2178584	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr4	89468813	89468814	chr4:89468814:T:C	rs1495553	T	C	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr4	89658102	89658103	chr4:89658103:C:T	rs753109515	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr4	89658107	89658108	chr4:89658108:A:G	rs141868195	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr4	89752866	89752867	chr4:89752867:A:C	rs34194714	A	C	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	7.202667727093368	GTCATAAAA
chr4	92992894	92992895	chr4:92992895:G:T	rs150920962	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr4	94623566	94623567	chr4:94623567:A:G	rs6853490	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	9.305184528107661	6.142610663196681	GTCGTAAAA
chr4	94929194	94929195	chr4:94929195:T:C	rs141532020	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr4	95202314	95202315	chr4:95202315:T:C	rs3775053	T	C	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr4	95363406	95363407	chr4:95363407:A:C	rs79234344	A	C	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr4	95363432	95363433	chr4:95363433:A:G	rs2626045	A	G	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr4	95476372	95476373	chr4:95476373:T:A	rs265058	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr4	95542857	95542858	chr4:95542858:C:A	rs7685968	C	A	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr4	96362448	96362449	chr4:96362449:C:T	rs4619895	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr4	97159878	97159879	chr4:97159879:T:C	rs11936576	T	C	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr4	97349977	97349978	chr4:97349978:A:T	rs35436423	A	T	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr4	99060671	99060672	chr4:99060672:C:T	rs111390962	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr4	99358526	99358527	chr4:99358527:G:A	rs1662039	G	A	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr4	100195949	100195950	chr4:100195950:C:G	rs112149787	C	G	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr4	100608156	100608157	chr4:100608157:G:C	rs59769978	G	C	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr4	100970542	100970543	chr4:100970543:A:G	rs67405553	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr4	100979713	100979714	chr4:100979714:C:T	rs12511064	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr4	101450674	101450675	chr4:101450675:T:C	rs57302549	T	C	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr4	101977458	101977459	chr4:101977459:G:A	rs2631241	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr4	102624980	102624981	chr4:102624981:T:C	rs62327181	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr4	103895768	103895769	chr4:103895769:A:G	rs6533114	A	G	.	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr4	103944583	103944584	chr4:103944584:A:G	rs111996971	A	G	.	Hoxd9.mouse_homeodomain_3	6	1	+	7.994948769610968	4.016968795292732	CTCATAAAA
chr4	104064838	104064839	chr4:104064839:C:T	rs548129556	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr4	105294212	105294213	chr4:105294213:T:A	rs2647228	T	A	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr4	106503467	106503468	chr4:106503468:C:T	rs79868235	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr4	107827553	107827554	chr4:107827554:G:A	rs76293257	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr4	108428439	108428440	chr4:108428440:T:A	rs598917	T	A	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr4	108428443	108428444	chr4:108428444:A:G	rs598928	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr4	108791149	108791150	chr4:108791150:G:A	rs77922013	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr4	110245691	110245692	chr4:110245692:T:G	rs6533505	T	G	G	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr4	111854639	111854640	chr4:111854640:T:C	rs989989703	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr4	112707449	112707450	chr4:112707450:T:C	rs4555714	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr4	113763433	113763434	chr4:113763434:T:C	rs1228266525	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr4	114366174	114366175	chr4:114366175:T:C	rs4458522	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr4	114807963	114807964	chr4:114807964:G:A	rs1312201072	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr4	114807976	114807977	chr4:114807977:C:T	rs763197249	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr4	114808005	114808006	chr4:114808006:T:C	rs72903098	T	C	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr4	114808008	114808009	chr4:114808009:A:G	rs74551067	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr4	115395547	115395548	chr4:115395548:G:A	rs7434614	G	A	g	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr4	115781723	115781724	chr4:115781724:C:T	rs11098316	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	117384590	117384591	chr4:117384591:G:T	rs13136435	G	T	t	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr4	117483259	117483260	chr4:117483260:T:C	rs11725039	T	C	C	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	6.916975105184722	GTCATAAAA
chr4	117604611	117604612	chr4:117604612:C:G	rs17867515	C	G	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	118018896	118018897	chr4:118018897:G:A	rs2389487	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr4	118834165	118834166	chr4:118834166:C:T	rs115673173	C	T	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	119206605	119206606	chr4:119206606:G:C	rs1397610	G	C	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr4	119454959	119454960	chr4:119454960:C:G	rs28441656	C	G	.	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	119666625	119666626	chr4:119666626:C:T	rs9994488	C	T	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr4	119730489	119730490	chr4:119730490:C:T	rs72906531	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	7.299208998835316	ATCGTAAAA
chr4	119895067	119895068	chr4:119895068:C:T	rs115601504	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr4	121212994	121212995	chr4:121212995:C:T	rs114561932	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	122456824	122456825	chr4:122456825:A:C	rs2069762	A	C	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	6.149902535056951	GTCATAAAA
chr4	122633673	122633674	chr4:122633674:A:G	rs1913190	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr4	123114187	123114188	chr4:123114188:G:A	rs13146450	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr4	123674120	123674121	chr4:123674121:G:A	rs28720084	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr4	123910375	123910376	chr4:123910376:T:C	rs115808822	T	C	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr4	124986327	124986328	chr4:124986328:G:A	rs4834011	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr4	125159189	125159190	chr4:125159190:T:A	rs13133791	T	A	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.662713508931605	4.500139644020625	CTCGTAAAC
chr4	125164860	125164861	chr4:125164861:G:A	rs4240276	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr4	125229111	125229112	chr4:125229112:A:C	rs10014026	A	C	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr4	125447722	125447723	chr4:125447723:G:A	rs13108706	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr4	125447742	125447743	chr4:125447743:G:T	rs4834039	G	T	T	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.543531141267286	GTCGTAAAA
chr4	126684968	126684969	chr4:126684969:C:A	rs364542	C	A	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr4	127058664	127058665	chr4:127058665:T:C	rs12510258	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr4	127268482	127268483	chr4:127268483:T:C	rs11930999	T	C	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr4	127963697	127963698	chr4:127963698:A:G	rs4470641	A	G	g	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr4	128552963	128552964	chr4:128552964:C:T	rs1327608535	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr4	129430646	129430647	chr4:129430647:G:A	rs72672154	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr4	130202501	130202502	chr4:130202502:C:T	rs71614804	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr4	131168799	131168800	chr4:131168800:C:T	rs608700	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr4	131990105	131990106	chr4:131990106:T:A	rs2863923	T	A	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr4	132813234	132813235	chr4:132813235:G:A	rs149538936	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr4	134015616	134015617	chr4:134015617:A:C	rs6817341	A	C	-	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr4	134374265	134374266	chr4:134374266:G:A	rs7693537	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr4	135142904	135142905	chr4:135142905:C:T	rs7694466	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr4	136107149	136107150	chr4:136107150:A:T	rs28725221	A	T	A	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr4	137376348	137376349	chr4:137376349:T:C	rs12648432	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr4	137421947	137421948	chr4:137421948:A:G	rs112698655	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr4	137623948	137623949	chr4:137623949:G:A	rs62331781	G	A	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr4	137857742	137857743	chr4:137857743:C:T	rs6824568	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr4	137857749	137857750	chr4:137857750:T:C	rs6840238	T	C	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	137857757	137857758	chr4:137857758:A:G	rs115897473	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr4	138052373	138052374	chr4:138052374:C:T	rs13102080	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr4	138937754	138937755	chr4:138937755:C:T	rs116041684	C	T	c	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr4	139266924	139266925	chr4:139266925:T:C	rs35809233	T	C	t	Hoxd9.mouse_homeodomain_3	3	1	-	8.420043757940196	9.305184528107661	GTCATAAAA
chr4	139266939	139266940	chr4:139266940:C:T	rs3208941	C	T	c	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr4	139463143	139463144	chr4:139463144:A:G	rs6818778	A	G	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr4	139808527	139808528	chr4:139808528:A:G	rs773417027	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr4	139815428	139815429	chr4:139815429:T:C	rs72730243	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	139973457	139973458	chr4:139973458:G:A	rs1877076	G	A	g	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr4	140935497	140935498	chr4:140935498:T:A	rs75539234	T	A	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr4	141214638	141214639	chr4:141214639:T:C	rs10020128	T	C	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr4	141220917	141220918	chr4:141220918:C:G	rs551226639	C	G	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr4	142400747	142400748	chr4:142400748:C:T	rs6839769	C	T	C	Hoxd9.mouse_homeodomain_3	1	1	-	7.176266619256224	6.752249517824526	GGCGTAAAA
chr4	142407183	142407184	chr4:142407184:T:C	rs74908743	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr4	142845010	142845011	chr4:142845011:A:G	rs60263370	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr4	143186183	143186184	chr4:143186184:T:C	rs58547743	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr4	144450193	144450194	chr4:144450194:A:G	rs749316	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr4	144667071	144667072	chr4:144667072:G:T	rs78231893	G	T	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr4	145619129	145619130	chr4:145619130:C:G	rs1056728960	C	G	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr4	145619155	145619156	chr4:145619156:C:T	rs112822602	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr4	145964918	145964919	chr4:145964919:T:C	rs62328070	T	C	t	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr4	146054624	146054625	chr4:146054625:G:A	rs75391607	G	A	g	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr4	146455953	146455954	chr4:146455954:C:T	rs6844702	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr4	147581993	147581994	chr4:147581994:G:A	rs73853949	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr4	147928689	147928690	chr4:147928690:C:T	rs985595536	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr4	148107570	148107571	chr4:148107571:C:T	rs35480965	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr4	148654432	148654433	chr4:148654433:G:A	rs147793168	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr4	148954266	148954267	chr4:148954267:G:T	rs1042968991	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr4	149311324	149311325	chr4:149311325:T:C	rs6818240	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	150302202	150302203	chr4:150302203:T:G	rs72953804	T	G	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	150490406	150490407	chr4:150490407:C:T	rs74971210	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	7.299208998835316	ATCGTAAAA
chr4	151314482	151314483	chr4:151314483:T:C	rs2651321	T	C	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr4	151341010	151341011	chr4:151341011:A:T	rs111772461	A	T	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr4	152739057	152739058	chr4:152739058:G:A	rs10009931	G	A	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr4	153782357	153782358	chr4:153782358:C:T	rs74636475	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	7.026203907121121	GTCATAAAA
chr4	155718693	155718694	chr4:155718694:A:G	rs12643599	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr4	156143923	156143924	chr4:156143924:T:C	rs7661151	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr4	156187137	156187138	chr4:156187138:A:G	rs13115068	A	G	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr4	156330017	156330018	chr4:156330018:T:C	rs13144229	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr4	157171908	157171909	chr4:157171909:C:T	rs10517662	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr4	159171369	159171370	chr4:159171370:T:C	rs75007992	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr4	159390865	159390866	chr4:159390866:C:T	rs115284525	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr4	159941233	159941234	chr4:159941234:G:A	rs116142840	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr4	160251219	160251220	chr4:160251220:T:C	rs186098	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr4	160258541	160258542	chr4:160258542:T:C	rs295240	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr4	160360492	160360493	chr4:160360493:G:A	rs294513	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr4	160514216	160514217	chr4:160514217:T:C	rs62332307	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr4	160934931	160934932	chr4:160934932:G:A	rs9993721	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr4	161484884	161484885	chr4:161484885:G:A	rs114159514	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr4	162157579	162157580	chr4:162157580:C:T	rs7689130	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr4	162269709	162269710	chr4:162269710:G:T	rs11100423	G	T	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr4	164716957	164716958	chr4:164716958:C:T	rs17622172	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr4	165326677	165326678	chr4:165326678:A:G	chr4:165326678:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr4	166961421	166961422	chr4:166961422:T:C	rs140441427	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr4	167506654	167506655	chr4:167506655:C:T	rs114235578	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	6.906634116835357	6.021493346667889	GCCGTAAAC
chr4	168408778	168408779	chr4:168408779:G:A	rs17612290	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	169659852	169659853	chr4:169659853:A:C	rs765071669	A	C	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr4	171982263	171982264	chr4:171982264:C:T	rs17057824	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr4	173038161	173038162	chr4:173038162:A:G	rs17255483	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr4	173531184	173531185	chr4:173531185:G:A	chr4:173531185:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr4	173735654	173735655	chr4:173735655:C:T	rs55973662	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr4	173748212	173748213	chr4:173748213:G:A	rs7696786	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr4	173836515	173836516	chr4:173836516:C:T	rs561821823	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr4	174147989	174147990	chr4:174147990:G:A	rs149911442	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr4	174402831	174402832	chr4:174402832:G:C	rs11725800	G	C	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr4	175943886	175943887	chr4:175943887:G:A	rs62334821	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr4	177644934	177644935	chr4:177644935:C:T	rs34991612	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr4	179976923	179976924	chr4:179976924:T:C	rs12509934	T	C	N	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr4	180665263	180665264	chr4:180665264:C:T	rs2546258	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr4	181140485	181140486	chr4:181140486:C:A	rs76087508	C	A	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr4	181537022	181537023	chr4:181537023:C:T	rs192946170	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr4	181609191	181609192	chr4:181609192:G:T	rs13142501	G	T	T	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr4	182107369	182107370	chr4:182107370:C:T	rs7697442	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr4	182724588	182724589	chr4:182724589:A:G	rs77037666	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr4	182770325	182770326	chr4:182770326:C:T	rs17264314	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr4	182874666	182874667	chr4:182874667:G:A	rs17074169	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	6.906634116835357	6.294498438382084	GCCGTAAAC
chr4	182975630	182975631	chr4:182975631:C:A	rs2714533	C	A	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr4	182975639	182975640	chr4:182975640:C:T	rs80281593	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr4	183321227	183321228	chr4:183321228:A:G	rs6833912	A	G	.	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	1.1265062080143724	CTCATAAAA
chr4	183812924	183812925	chr4:183812925:C:T	rs17075045	C	T	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr4	184148308	184148309	chr4:184148309:C:T	rs183282085	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr4	184329192	184329193	chr4:184329193:G:C	rs793893	G	C	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr4	184329215	184329216	chr4:184329216:A:G	rs793894	A	G	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr4	184592777	184592778	chr4:184592778:G:A	rs111997930	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	185470743	185470744	chr4:185470744:C:T	rs66481949	C	T	t	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr4	185715776	185715777	chr4:185715777:G:A	rs6826210	G	A	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr4	185817145	185817146	chr4:185817146:C:G	rs7674346	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	2.1328813567502314	ATCGTAAAA
chr4	185932583	185932584	chr4:185932584:A:G	rs10002615	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr4	186146756	186146757	chr4:186146757:G:A	rs73027936	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr4	186319125	186319126	chr4:186319126:T:A	rs13137269	T	A	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr4	186455960	186455961	chr4:186455961:A:G	rs11722120	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr4	186455994	186455995	chr4:186455995:G:A	rs11730440	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr4	186932737	186932738	chr4:186932738:T:G	rs72719503	T	G	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr4	186995875	186995876	chr4:186995876:G:C	rs3796649	G	C	C	Hoxd9.mouse_homeodomain_3	2	1	-	7.8073383678986845	1.2471708749945272	CTCGTTAAA
chr4	187283659	187283660	chr4:187283660:G:A	rs148584994	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr4	188015329	188015330	chr4:188015330:A:G	rs10000390	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr4	188324619	188324620	chr4:188324620:G:A	rs34345885	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr4	188732319	188732320	chr4:188732320:T:C	rs1481271964	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr4	188876435	188876436	chr4:188876436:C:T	rs13126718	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr4	189099495	189099496	chr4:189099496:G:A	rs7700119	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr4	189305792	189305793	chr4:189305793:G:T	rs28561813	G	T	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr5	106656	106657	chr5:106657:A:G	rs111553359	A	G	a	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr5	214011	214012	chr5:214012:T:C	rs2099084	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr5	400778	400779	chr5:400779:G:T	rs556633369	G	T	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr5	404597	404598	chr5:404598:C:T	rs11743226	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr5	428115	428116	chr5:428116:T:C	rs12188678	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr5	544100	544101	chr5:544101:G:A	rs143386123	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.911344677288588	GTCGTAAAA
chr5	1021561	1021562	chr5:1021562:A:G	rs76118124	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr5	1021583	1021584	chr5:1021584:G:A	rs7380206	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr5	1179203	1179204	chr5:1179204:G:A	rs538178698	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr5	1300468	1300469	chr5:1300469:C:G	rs2735845	C	G	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr5	1446911	1446912	chr5:1446912:C:A	rs6413429	C	A	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr5	1642463	1642464	chr5:1642464:G:A	rs7731504	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr5	1736595	1736596	chr5:1736596:T:C	rs16884043	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	1.8045007974963716	GTCATAAAA
chr5	1744098	1744099	chr5:1744099:C:T	rs10065079	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr5	1755848	1755849	chr5:1755849:T:C	rs10058444	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr5	1843286	1843287	chr5:1843287:G:A	rs72704484	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.087808497260832	7.202667727093368	GTCGTAAAC
chr5	2112198	2112199	chr5:2112199:T:G	rs58771367	T	G	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr5	2112204	2112205	chr5:2112205:C:T	rs13355078	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr5	2174000	2174001	chr5:2174001:A:T	rs17584481	A	T	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr5	2184250	2184251	chr5:2184251:C:T	rs13172851	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr5	2894370	2894371	chr5:2894371:A:G	rs2974648	A	G	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr5	3271924	3271925	chr5:3271925:G:A	rs17571538	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr5	4929650	4929651	chr5:4929651:T:A	rs73036163	T	A	T	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr5	5751850	5751851	chr5:5751851:A:G	rs402117	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.69304884965439	5.530474984743409	ATCGTAAAA
chr5	5751864	5751865	chr5:5751865:G:A	rs406121	G	A	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr5	6030062	6030063	chr5:6030063:G:A	rs12658401	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr5	6383360	6383361	chr5:6383361:G:A	rs56403520	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr5	6567039	6567040	chr5:6567040:A:T	rs2617570	A	T	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr5	6567049	6567050	chr5:6567050:A:G	rs115257241	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr5	7425674	7425675	chr5:7425675:C:T	rs17813652	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr5	8215325	8215326	chr5:8215326:C:A	rs4702534	C	A	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr5	9105170	9105171	chr5:9105171:T:C	rs2456237	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr5	10317945	10317946	chr5:10317946:C:T	rs76367609	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr5	10317964	10317965	chr5:10317965:G:A	rs474306	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr5	10695413	10695414	chr5:10695414:T:C	rs2930047	T	C	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr5	11955674	11955675	chr5:11955675:A:T	rs78179045	A	T	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr5	12243683	12243684	chr5:12243684:A:C	rs4440360	A	C	.	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr5	12392426	12392427	chr5:12392427:T:C	rs2215201	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr5	12618089	12618090	chr5:12618090:C:G	rs7713276	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr5	13250703	13250704	chr5:13250704:G:C	rs13169850	G	C	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr5	13317941	13317942	chr5:13317942:A:T	rs1470468	A	T	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr5	13493143	13493144	chr5:13493144:G:A	rs151140	G	A	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr5	14003749	14003750	chr5:14003750:T:C	rs441254	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr5	14872650	14872651	chr5:14872651:A:G	rs965183797	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr5	14872653	14872654	chr5:14872654:T:A	rs190192041	T	A	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr5	16481075	16481076	chr5:16481076:A:G	rs16868675	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr5	17012579	17012580	chr5:17012580:A:G	rs4701675	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr5	17284979	17284980	chr5:17284980:T:C	rs75760532	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.994948769610968	1.3794058091671437	CTCATAAAA
chr5	17698020	17698021	chr5:17698021:G:T	rs7444953	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr5	17727997	17727998	chr5:17727998:A:G	rs68031062	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr5	18702217	18702218	chr5:18702218:G:C	rs16886711	G	C	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr5	19288855	19288856	chr5:19288856:C:G	rs111263618	C	G	c	Hoxd9.mouse_homeodomain_3	2	1	+	7.662713508931605	1.1025460160274478	CTCGTAAAC
chr5	20000640	20000641	chr5:20000641:C:A	rs77812942	C	A	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	20711884	20711885	chr5:20711885:A:G	rs59636641	A	G	-	Hoxd9.mouse_homeodomain_3	5	1	+	8.420043757940196	1.8045007974963716	GTCATAAAA
chr5	21879792	21879793	chr5:21879793:C:T	rs16899338	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr5	22698496	22698497	chr5:22698497:G:A	rs115463560	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr5	23134372	23134373	chr5:23134373:G:A	rs310889	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr5	23721552	23721553	chr5:23721553:G:A	rs11955469	G	A	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr5	28014765	28014766	chr5:28014766:C:T	rs34261134	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr5	28195534	28195535	chr5:28195535:C:G	rs79193992	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr5	29230775	29230776	chr5:29230776:G:A	rs71621767	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr5	32366233	32366234	chr5:32366234:A:C	rs112363536	A	C	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr5	32597361	32597362	chr5:32597362:G:A	rs4867459	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr5	33011360	33011361	chr5:33011361:T:C	rs11748425	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.491880116855494	CTCATAAAA
chr5	33565889	33565890	chr5:33565890:A:G	rs2016646	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.8073383678986845	6.304269715143211	CTCGTTAAA
chr5	34157046	34157047	chr5:34157047:A:G	rs4143437	A	G	N	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr5	34703870	34703871	chr5:34703871:A:G	rs17592391	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr5	34717408	34717409	chr5:34717409:T:C	rs114627162	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.491880116855494	CTCATAAAA
chr5	34717419	34717420	chr5:34717420:G:A	rs181172004	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr5	35198763	35198764	chr5:35198764:T:C	rs991799673	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr5	35238142	35238143	chr5:35238143:T:C	rs7710279	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr5	35892187	35892188	chr5:35892188:T:C	rs62351975	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr5	36607762	36607763	chr5:36607763:T:C	rs13154397	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr5	36832038	36832039	chr5:36832039:G:A	rs292174	G	A	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr5	38597266	38597267	chr5:38597267:C:T	rs3812044	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr5	38759427	38759428	chr5:38759428:C:T	rs78380242	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr5	39429413	39429414	chr5:39429414:C:A	chr5:39429414:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	5.297987686137697	GTCGTAAAT
chr5	39429413	39429414	chr5:39429414:C:G	rs1025048	C	G	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	4.858850147674592	GTCGTAAAT
chr5	39429428	39429429	chr5:39429429:A:C	rs148405324	A	C	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr5	39706830	39706831	chr5:39706831:A:G	rs10077158	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.491880116855494	CTCATAAAA
chr5	40079495	40079496	chr5:40079496:A:G	rs4957116	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr5	40191936	40191937	chr5:40191937:C:T	rs111914727	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr5	40229679	40229680	chr5:40229680:C:A	rs353363	C	A	-	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr5	40413885	40413886	chr5:40413886:C:T	rs115471531	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr5	40638111	40638112	chr5:40638112:C:T	rs115106649	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr5	40929712	40929713	chr5:40929713:G:A	rs2455305	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr5	40929729	40929730	chr5:40929730:T:G	rs2122569	T	G	G	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.2900197045022255	CTCATAAAA
chr5	41621478	41621479	chr5:41621479:A:C	rs6885560	A	C	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr5	42424357	42424358	chr5:42424358:T:A	rs80310546	T	A	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr5	42887319	42887320	chr5:42887320:T:A	rs114314981	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr5	42887334	42887335	chr5:42887335:C:T	rs7718081	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr5	42994106	42994107	chr5:42994107:T:C	rs147387363	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.087808497260832	6.906634116835357	GTCGTAAAC
chr5	43110855	43110856	chr5:43110856:T:G	rs71627575	T	G	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr5	46525098	46525099	chr5:46525099:C:T	rs1172652499	C	T	.	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr5	49739511	49739512	chr5:49739512:T:C	rs1444780777	T	C	.	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr5	52936809	52936810	chr5:52936810:A:G	rs183209907	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr5	53109440	53109441	chr5:53109441:G:A	rs576049243	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr5	53369761	53369762	chr5:53369762:C:T	rs55728546	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr5	53416489	53416490	chr5:53416490:C:T	rs116432920	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr5	53430642	53430643	chr5:53430643:T:C	rs11748993	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr5	53516095	53516096	chr5:53516096:C:T	rs72748128	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr5	54135839	54135840	chr5:54135840:T:C	rs17404688	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr5	54453254	54453255	chr5:54453255:C:T	rs62354493	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr5	54525870	54525871	chr5:54525871:C:T	rs2548606	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr5	54624899	54624900	chr5:54624900:C:T	rs114709172	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr5	54647377	54647378	chr5:54647378:G:C	rs6450229	G	C	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr5	54938193	54938194	chr5:54938194:G:A	rs4865588	G	A	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr5	56076480	56076481	chr5:56076481:G:A	rs6450366	G	A	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr5	56413848	56413849	chr5:56413849:C:G	rs463139	C	G	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr5	58094267	58094268	chr5:58094268:G:A	rs17433449	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr5	58314871	58314872	chr5:58314872:A:G	chr5:58314872:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr5	58390651	58390652	chr5:58390652:C:T	rs73757779	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr5	58452728	58452729	chr5:58452729:T:C	rs13159762	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr5	59001084	59001085	chr5:59001085:C:T	rs72764051	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr5	59609173	59609174	chr5:59609174:T:C	rs295961	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr5	61245454	61245455	chr5:61245455:T:A	rs12522729	T	A	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr5	61307868	61307869	chr5:61307869:A:G	rs4235486	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr5	61673044	61673045	chr5:61673045:T:C	rs16893470	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr5	65562487	65562488	chr5:65562488:G:A	rs16893963	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr5	66145686	66145687	chr5:66145687:C:T	rs114986679	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr5	66654328	66654329	chr5:66654329:A:G	rs12519072	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr5	66789510	66789511	chr5:66789511:T:G	rs1982328	T	G	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr5	66960862	66960863	chr5:66960863:A:T	rs75527307	A	T	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	67043053	67043054	chr5:67043054:A:G	rs27206	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr5	67238330	67238331	chr5:67238331:C:G	rs16896448	C	G	c	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr5	67249050	67249051	chr5:67249051:T:C	rs10070739	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr5	67411798	67411799	chr5:67411799:G:C	rs167605	G	C	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr5	67534617	67534618	chr5:67534618:A:G	rs72765093	A	G	G	Hoxd9.mouse_homeodomain_3	6	1	+	7.994948769610968	4.016968795292732	CTCATAAAA
chr5	67960740	67960741	chr5:67960741:T:C	rs1366315	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	68019830	68019831	chr5:68019831:C:A	rs282303	C	A	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr5	68129641	68129642	chr5:68129642:C:T	rs34487182	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	3.5987518915749583	CTCATAAAA
chr5	68189628	68189629	chr5:68189629:C:T	rs6875934	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr5	68344086	68344087	chr5:68344087:A:G	rs34299	A	G	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr5	68455393	68455394	chr5:68455394:A:C	rs42905	A	C	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr5	68962711	68962712	chr5:68962712:A:G	rs12515924	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr5	69115182	69115183	chr5:69115183:C:T	rs240809	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	-	8.232433356227913	7.620297677774641	GTCGTTAAA
chr5	69525692	69525693	chr5:69525693:T:A	rs560325579	T	A	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	6.163945085190828	CTCATAAAA
chr5	71483783	71483784	chr5:71483784:A:T	rs11953420	A	T	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr5	71834632	71834633	chr5:71834633:G:A	rs2721773	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr5	71874651	71874652	chr5:71874652:C:G	rs35026170	C	G	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr5	71874662	71874663	chr5:71874663:C:T	rs10462549	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr5	72115478	72115479	chr5:72115479:C:T	rs1531311	C	T	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr5	72494981	72494982	chr5:72494982:G:A	rs10056589	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr5	72600627	72600628	chr5:72600628:C:T	rs112732241	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr5	73514475	73514476	chr5:73514476:G:A	rs62364772	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr5	73565792	73565793	chr5:73565793:G:A	rs188859263	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr5	74030692	74030693	chr5:74030693:T:C	rs376049	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr5	74094789	74094790	chr5:74094790:T:A	rs17734801	T	A	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr5	74543991	74543992	chr5:74543992:G:A	rs390755	G	A	A	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr5	75656619	75656620	chr5:75656620:G:A	rs188720347	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr5	76473923	76473924	chr5:76473924:A:G	rs140970214	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	8.420043757940196	1.5516011963436003	GTCATAAAA
chr5	76690895	76690896	chr5:76690896:C:T	rs77832468	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr5	76690906	76690907	chr5:76690907:G:A	rs113427204	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr5	76819998	76819999	chr5:76819999:C:T	rs35028859	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr5	77617846	77617847	chr5:77617847:G:C	rs4704436	G	C	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr5	79909570	79909571	chr5:79909571:C:T	rs56371756	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr5	80149744	80149745	chr5:80149745:G:A	rs78290725	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	3.5987518915749583	CTCATAAAA
chr5	82404599	82404600	chr5:82404600:C:T	rs78010312	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.176266619256224	5.7824267684371495	GGCGTAAAA
chr5	82718977	82718978	chr5:82718978:C:G	rs1544787	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr5	82724608	82724609	chr5:82724609:G:A	rs7714876	G	A	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr5	82887255	82887256	chr5:82887256:T:C	rs75161440	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr5	83554811	83554812	chr5:83554812:A:G	rs2290673	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr5	83697009	83697010	chr5:83697010:C:T	rs12153751	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr5	84682677	84682678	chr5:84682678:G:A	rs6866089	G	A	g	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr5	84961912	84961913	chr5:84961913:G:T	rs1604167	G	T	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr5	85105161	85105162	chr5:85105162:T:C	rs34680438	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr5	86787212	86787213	chr5:86787213:G:A	rs570479806	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr5	87412855	87412856	chr5:87412856:G:A	rs144694453	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.176266619256224	6.564130940802952	GGCGTAAAA
chr5	87899555	87899556	chr5:87899556:C:T	rs1458198	C	T	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr5	88405405	88405406	chr5:88405406:C:T	rs4269995	C	T	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr5	88560041	88560042	chr5:88560042:C:T	rs7710776	C	T	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr5	89344312	89344313	chr5:89344313:T:C	rs379717	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr5	90301646	90301647	chr5:90301647:T:C	rs2935503	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr5	90410048	90410049	chr5:90410049:T:G	chr5:90410049:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr5	90410056	90410057	chr5:90410057:G:A	rs77584160	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr5	90410091	90410092	chr5:90410092:C:T	rs115072292	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr5	90410092	90410093	chr5:90410093:C:A	rs73190437	C	A	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr5	91182987	91182988	chr5:91182988:C:T	rs2941877	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr5	91742692	91742693	chr5:91742693:G:A	rs80319796	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr5	92990997	92990998	chr5:92990998:C:T	rs34515	C	T	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr5	92992016	92992017	chr5:92992017:A:G	rs79625829	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	6.813774389185489	CTCATAAAA
chr5	93200285	93200286	chr5:93200286:C:T	rs66552510	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.802115875352188	6.408276024533114	GTCGTAAAG
chr5	93207637	93207638	chr5:93207638:T:G	rs1057453836	T	G	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	93581237	93581238	chr5:93581238:G:A	rs73772907	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr5	94968862	94968863	chr5:94968863:A:G	rs32920	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr5	95304668	95304669	chr5:95304669:G:A	rs255957	G	A	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr5	95668778	95668779	chr5:95668779:G:C	rs34901	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr5	95844595	95844596	chr5:95844596:G:C	rs6884979	G	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr5	95844624	95844625	chr5:95844625:G:A	rs41470049	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr5	95861634	95861635	chr5:95861635:C:T	rs35129919	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr5	96283764	96283765	chr5:96283765:A:T	rs4283814	A	T	T	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr5	97694325	97694326	chr5:97694326:G:A	rs78713475	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr5	98458579	98458580	chr5:98458580:G:A	rs17165974	G	A	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr5	98458599	98458600	chr5:98458600:C:A	rs11241494	C	A	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr5	98771685	98771686	chr5:98771686:A:G	rs73151454	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr5	98771718	98771719	chr5:98771719:G:A	rs78784205	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr5	100762219	100762220	chr5:100762220:A:G	rs112327642	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr5	100890825	100890826	chr5:100890826:C:T	rs74559359	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr5	101507124	101507125	chr5:101507125:C:T	rs6595964	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr5	102583643	102583644	chr5:102583644:G:C	rs143189665	G	C	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr5	102626118	102626119	chr5:102626119:G:C	rs1155978	G	C	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr5	103014265	103014266	chr5:103014266:G:C	rs3776860	G	C	C	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.994948769610968	GTCATAAAA
chr5	103174663	103174664	chr5:103174664:A:G	rs150914083	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr5	103458693	103458694	chr5:103458694:C:A	rs114718462	C	A	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr5	103476457	103476458	chr5:103476458:A:G	rs291857	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	7.994948769610968	4.016968795292732	CTCATAAAA
chr5	104432174	104432175	chr5:104432175:G:A	rs2963207	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr5	104730667	104730668	chr5:104730668:A:G	rs62361862	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr5	105619892	105619893	chr5:105619893:C:T	rs56057326	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	6.195197301577001	CTCGTAAAT
chr5	106495873	106495874	chr5:106495874:G:A	rs6861905	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr5	106959523	106959524	chr5:106959524:C:T	rs141232129	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr5	107517054	107517055	chr5:107517055:G:A	rs62355605	G	A	g	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr5	108385022	108385023	chr5:108385023:T:C	rs1355375	T	C	C	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	6.916975105184722	GTCATAAAA
chr5	109496304	109496305	chr5:109496305:G:C	rs17478006	G	C	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr5	109705644	109705645	chr5:109705645:A:G	rs74779656	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr5	111200964	111200965	chr5:111200965:A:G	rs13360546	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr5	111584201	111584202	chr5:111584202:G:T	rs1551934	G	T	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr5	113266864	113266865	chr5:113266865:G:T	rs17135519	G	T	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr5	113322957	113322958	chr5:113322958:G:C	rs116578154	G	C	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr5	114412816	114412817	chr5:114412817:A:G	rs184692604	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr5	114416419	114416420	chr5:114416420:T:G	rs337714	T	G	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr5	114501457	114501458	chr5:114501458:A:C	rs79164610	A	C	A	Hoxd9.mouse_homeodomain_3	5	1	+	8.420043757940196	1.8045007974963716	GTCATAAAA
chr5	114885666	114885667	chr5:114885667:G:C	rs2045027	G	C	-	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr5	115195002	115195003	chr5:115195003:A:G	rs265413	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr5	115249662	115249663	chr5:115249663:C:T	rs155573	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr5	115472920	115472921	chr5:115472921:T:C	rs257058	T	C	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr5	115832968	115832969	chr5:115832969:A:C	rs7705442	A	C	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr5	116423368	116423369	chr5:116423369:T:C	rs17139724	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr5	116423392	116423393	chr5:116423393:C:G	rs73268959	C	G	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr5	116632117	116632118	chr5:116632118:C:T	rs597797	C	T	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr5	116953385	116953386	chr5:116953386:C:A	rs112514438	C	A	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.8073383678986845	6.045684981058309	CTCGTTAAA
chr5	118252653	118252654	chr5:118252654:C:T	rs66466949	C	T	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr5	118520649	118520650	chr5:118520650:T:C	rs4440399	T	C	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr5	119651412	119651413	chr5:119651413:T:C	rs179274	T	C	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr5	121053290	121053291	chr5:121053291:T:C	rs7727775	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr5	121285683	121285684	chr5:121285684:C:A	rs17147543	C	A	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr5	121285711	121285712	chr5:121285712:T:C	rs147450785	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr5	121366593	121366594	chr5:121366594:G:A	rs75504135	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr5	121402794	121402795	chr5:121402795:A:T	rs1068025	A	T	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr5	122386044	122386045	chr5:122386045:G:A	rs75030949	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	123089236	123089237	chr5:123089237:A:G	rs72800825	A	G	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr5	125198361	125198362	chr5:125198362:T:C	rs920386	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr5	125200124	125200125	chr5:125200125:C:T	rs72792627	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr5	125485370	125485371	chr5:125485371:G:A	rs10076405	G	A	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr5	125698311	125698312	chr5:125698312:C:T	rs35762924	C	T	T	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr5	126105130	126105131	chr5:126105131:T:C	rs1480961	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr5	126105209	126105210	chr5:126105210:C:G	rs1480962	C	G	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr5	126139751	126139752	chr5:126139752:C:T	rs113563007	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr5	126199807	126199808	chr5:126199808:T:C	rs1427887	T	C	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr5	126600325	126600326	chr5:126600326:T:G	rs148911946	T	G	T	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr5	126772642	126772643	chr5:126772643:C:T	rs10065951	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr5	127951167	127951168	chr5:127951168:G:A	rs115861953	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr5	128478917	128478918	chr5:128478918:G:A	rs77396757	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr5	128920263	128920264	chr5:128920264:A:G	chr5:128920264:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr5	129041730	129041731	chr5:129041731:G:A	rs1181963	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr5	129098459	129098460	chr5:129098460:G:A	rs3798110	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	129202382	129202383	chr5:129202383:C:T	rs114940664	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr5	130804961	130804962	chr5:130804962:C:T	rs17640296	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr5	130804986	130804987	chr5:130804987:A:G	rs12652579	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr5	132025644	132025645	chr5:132025645:T:C	rs148012393	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr5	132138291	132138292	chr5:132138292:A:G	rs115304450	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr5	132150805	132150806	chr5:132150806:C:T	rs79155232	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr5	132506482	132506483	chr5:132506483:G:A	rs4705953	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr5	133116848	133116849	chr5:133116849:G:A	rs68118619	G	A	g	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr5	133235820	133235821	chr5:133235821:G:C	rs115099833	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr5	133664607	133664608	chr5:133664608:C:T	rs10052270	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr5	133664624	133664625	chr5:133664625:G:T	rs72789178	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr5	134594867	134594868	chr5:134594868:T:C	rs114128743	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr5	135088936	135088937	chr5:135088937:G:A	rs114590188	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr5	135323379	135323380	chr5:135323380:C:A	chr5:135323380:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr5	135356535	135356536	chr5:135356536:T:C	rs115038134	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr5	135356553	135356554	chr5:135356554:T:C	rs3776208	T	C	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr5	135812998	135812999	chr5:135812999:C:G	rs4976461	C	G	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr5	137128121	137128122	chr5:137128122:A:G	rs2905975	A	G	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr5	137296065	137296066	chr5:137296066:C:A	rs10037945	C	A	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr5	138944366	138944367	chr5:138944367:T:G	rs874115	T	G	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr5	138964754	138964755	chr5:138964755:C:T	rs534807838	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.8073383678986845	6.413498517079611	CTCGTTAAA
chr5	139342894	139342895	chr5:139342895:A:G	rs141641961	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr5	139747317	139747318	chr5:139747318:T:G	chr5:139747318:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr5	140635323	140635324	chr5:140635324:G:T	rs5744448	G	T	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr5	140700413	140700414	chr5:140700414:C:A	chr5:140700414:C:A	C	A	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	140875398	140875399	chr5:140875399:C:T	rs62622796	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr5	141876478	141876479	chr5:141876479:C:T	rs1235900742	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr5	142016356	142016357	chr5:142016357:G:A	rs61586772	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr5	142172315	142172316	chr5:142172316:A:T	chr5:142172316:A:T	A	T	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr5	142607115	142607116	chr5:142607116:T:G	rs13159871	T	G	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	7.202667727093368	GTCATAAAA
chr5	142888413	142888414	chr5:142888414:G:A	rs430109	G	A	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr5	143086995	143086996	chr5:143086996:G:A	rs3776318	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr5	143184347	143184348	chr5:143184348:G:T	rs3836770	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	4.9827707047653504	CCCGTAAAA
chr5	143829372	143829373	chr5:143829373:G:T	rs13361895	G	T	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr5	143933772	143933773	chr5:143933773:A:G	rs114633828	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr5	145531606	145531607	chr5:145531607:G:A	rs116789009	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr5	145836175	145836176	chr5:145836176:G:A	rs56410343	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr5	145930772	145930773	chr5:145930773:A:C	rs6580395	A	C	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	5.866030860759529	CTCATAAAA
chr5	146284081	146284082	chr5:146284082:G:A	rs76421137	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr5	146428844	146428845	chr5:146428845:A:G	rs7712762	A	G	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr5	146510891	146510892	chr5:146510892:C:T	rs3822506	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	146608011	146608012	chr5:146608012:A:G	rs56791426	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr5	147148623	147148624	chr5:147148624:C:T	rs62379284	C	T	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr5	147292453	147292454	chr5:147292454:C:T	rs11960583	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	3.5987518915749583	CTCATAAAA
chr5	147544830	147544831	chr5:147544831:C:G	rs59481656	C	G	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr5	147544849	147544850	chr5:147544850:T:C	rs57435233	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr5	147632418	147632419	chr5:147632419:C:T	rs3763091	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr5	148417204	148417205	chr5:148417205:G:A	chr5:148417205:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr5	149061564	149061565	chr5:149061565:T:C	rs36044	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr5	149185779	149185780	chr5:149185780:C:A	rs4267859	C	A	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr5	149549781	149549782	chr5:149549782:A:G	rs1276553076	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr5	149954995	149954996	chr5:149954996:A:G	rs11950461	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr5	150132228	150132229	chr5:150132229:G:A	rs3733678	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr5	150389313	150389314	chr5:150389314:C:T	rs77558738	C	T	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr5	150482392	150482393	chr5:150482393:G:A	rs4958584	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr5	151175421	151175422	chr5:151175422:G:A	rs62379725	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr5	151295535	151295536	chr5:151295536:G:A	rs17660108	G	A	g	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr5	151592120	151592121	chr5:151592121:T:C	rs4958462	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr5	152052296	152052297	chr5:152052297:T:G	rs527532730	T	G	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.176266619256224	3.4713375541474822	GGCGTAAAA
chr5	152380863	152380864	chr5:152380864:C:T	rs888877	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr5	152688774	152688775	chr5:152688775:A:G	rs149586080	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr5	152864828	152864829	chr5:152864829:A:C	rs2069118	A	C	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr5	154367017	154367018	chr5:154367018:A:G	rs75720702	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr5	155126755	155126756	chr5:155126756:T:A	rs13178765	T	A	a	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr5	155540989	155540990	chr5:155540990:C:T	rs1363738	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr5	155727583	155727584	chr5:155727584:C:T	rs62382286	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr5	155878982	155878983	chr5:155878983:T:G	rs244989	T	G	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr5	156339311	156339312	chr5:156339312:G:A	rs10065774	G	A	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr5	156339329	156339330	chr5:156339330:T:C	rs6888978	T	C	C	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	6.916975105184722	GTCATAAAA
chr5	156447092	156447093	chr5:156447093:G:A	rs1504934	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr5	156920804	156920805	chr5:156920805:C:G	rs114775121	C	G	C	Hoxd9.mouse_homeodomain_3	8	1	-	7.37702088702296	7.662713508931605	CTCGTAAAG
chr5	157130599	157130600	chr5:157130600:T:C	rs56000862	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr5	157175274	157175275	chr5:157175275:G:A	rs865332	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.232433356227913	7.620297677774641	GTCGTTAAA
chr5	157432178	157432179	chr5:157432179:C:T	rs80261453	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr5	157505367	157505368	chr5:157505368:A:C	rs2277027	A	C	C	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr5	157610403	157610404	chr5:157610404:G:A	rs10063242	G	A	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr5	158197777	158197778	chr5:158197778:G:A	rs190272546	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr5	158802894	158802895	chr5:158802895:G:C	rs140814588	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	1.0288696594919167	CTCGTAAAT
chr5	158815964	158815965	chr5:158815965:G:C	rs115855109	G	C	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr5	159787422	159787423	chr5:159787423:G:C	rs185237225	G	C	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr5	159865695	159865696	chr5:159865696:A:G	rs31694	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr5	160288966	160288967	chr5:160288967:A:T	rs10059192	A	T	a	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr5	160342796	160342797	chr5:160342797:C:G	rs17408142	C	G	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr5	160533872	160533873	chr5:160533873:T:C	rs888657	T	C	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr5	160557046	160557047	chr5:160557047:G:A	rs7712888	G	A	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr5	160645490	160645491	chr5:160645491:T:C	rs76839434	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr5	160750483	160750484	chr5:160750484:G:T	rs2963193	G	T	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr5	162498598	162498599	chr5:162498599:G:T	rs1484364	G	T	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr5	162571223	162571224	chr5:162571224:G:A	rs1872274	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr5	163384205	163384206	chr5:163384206:T:C	rs4473791	T	C	C	Hoxd9.mouse_homeodomain_3	5	1	-	8.087808497260832	1.47226553681701	GTCGTAAAC
chr5	163460205	163460206	chr5:163460206:G:T	rs964632272	G	T	G	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr5	163503950	163503951	chr5:163503951:A:G	rs147551894	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr5	164013198	164013199	chr5:164013199:G:T	chr5:164013199:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.23329538277059	CTCATAAAA
chr5	164497354	164497355	chr5:164497355:G:C	rs6875647	G	C	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr5	165113342	165113343	chr5:165113343:T:G	rs6869965	T	G	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr5	165285228	165285229	chr5:165285229:G:A	rs1368421	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr5	167134520	167134521	chr5:167134521:A:G	rs10068819	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr5	167643154	167643155	chr5:167643155:G:C	rs7443768	G	C	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr5	167671317	167671318	chr5:167671318:T:C	rs4432913	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr5	168086374	168086375	chr5:168086375:C:T	rs66885574	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr5	168260760	168260761	chr5:168260761:T:C	rs1862299	T	C	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr5	169085368	169085369	chr5:169085369:G:A	rs296011	G	A	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr5	169583464	169583465	chr5:169583465:G:A	rs929632963	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr5	169583492	169583493	chr5:169583493:A:C	rs181567202	A	C	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr5	170122090	170122091	chr5:170122091:A:G	rs11134610	A	G	G	Hoxd9.mouse_homeodomain_3	5	1	+	8.087808497260832	1.47226553681701	GTCGTAAAC
chr5	170179753	170179754	chr5:170179754:A:G	rs6555891	A	G	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr5	170301468	170301469	chr5:170301469:T:C	rs1039784	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr5	170770247	170770248	chr5:170770248:T:C	rs6555914	T	C	.	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr5	172412657	172412658	chr5:172412658:A:G	rs10062425	A	G	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr5	172765850	172765851	chr5:172765851:C:T	rs368462232	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr5	172765865	172765866	chr5:172765866:G:A	rs150083776	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr5	172781885	172781886	chr5:172781886:C:T	rs77785538	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr5	172815023	172815024	chr5:172815024:G:C	rs7705927	G	C	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr5	173457240	173457241	chr5:173457241:C:G	rs13184101	C	G	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr5	173529966	173529967	chr5:173529967:A:G	rs10053202	A	G	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr5	173800411	173800412	chr5:173800412:A:G	rs2561773	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr5	173832642	173832643	chr5:173832643:G:A	rs11740847	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr5	175616509	175616510	chr5:175616510:G:C	rs139788330	G	C	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr5	177007029	177007030	chr5:177007030:G:T	rs73343910	G	T	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr5	177421402	177421403	chr5:177421403:G:A	rs60971332	G	A	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr5	178185981	178185982	chr5:178185982:G:A	rs13169133	G	A	a	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr5	178658499	178658500	chr5:178658500:G:A	rs534542243	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr5	179218636	179218637	chr5:179218637:G:A	rs55885988	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr5	179994882	179994883	chr5:179994883:A:G	rs248315	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr5	180193794	180193795	chr5:180193795:T:G	rs56654465	T	G	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr5	180331709	180331710	chr5:180331710:G:A	rs73813217	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	6.906634116835357	5.512794266016282	GCCGTAAAC
chr5	181170659	181170660	chr5:181170660:G:A	rs11750203	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	6.906634116835357	6.021493346667889	GCCGTAAAC
chr5	181170665	181170666	chr5:181170666:G:T	rs77507285	G	T	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr5	181183646	181183647	chr5:181183647:T:G	rs56840549	T	G	-	Hoxd9.mouse_homeodomain_3	4	1	+	7.176266619256224	4.994381072961697	GGCGTAAAA
chr5	181243094	181243095	chr5:181243095:A:C	rs11249778	A	C	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr6	435027	435028	chr6:435028:G:C	rs112726041	G	C	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr6	435059	435060	chr6:435060:G:A	rs76292414	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr6	451098	451099	chr6:451099:A:C	rs6899601	A	C	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr6	519022	519023	chr6:519023:G:C	rs6935343	G	C	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr6	1200510	1200511	chr6:1200511:T:C	rs1013185	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	7.238869377514717	GTCATAAAA
chr6	1204642	1204643	chr6:1204643:G:A	rs9502858	G	A	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr6	2197535	2197536	chr6:2197536:C:A	rs58597203	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.698915159352956	7.511874469228912	CCCGTAAAA
chr6	2744308	2744309	chr6:2744309:C:T	rs114683926	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr6	2744319	2744320	chr6:2744320:A:G	rs17135661	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr6	2865102	2865103	chr6:2865103:G:A	rs67554866	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	9.305184528107661	8.69304884965439	GTCGTAAAA
chr6	3284464	3284465	chr6:3284465:C:T	rs9503521	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr6	3343309	3343310	chr6:3343310:C:T	rs10498660	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr6	3719975	3719976	chr6:3719976:A:G	rs10900945	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr6	3719985	3719986	chr6:3719986:T:C	rs80192308	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr6	3772650	3772651	chr6:3772651:G:A	rs189657307	G	A	-	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr6	3805953	3805954	chr6:3805954:G:A	rs13437003	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.662713508931605	3.2665166308955964	CTCGTAAAC
chr6	4071599	4071600	chr6:4071600:T:C	rs942475	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr6	4254399	4254400	chr6:4254400:G:A	rs9328230	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr6	4671187	4671188	chr6:4671188:T:C	rs17272039	T	C	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr6	4715781	4715782	chr6:4715782:A:G	rs3812179	A	G	G	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	7.238869377514717	GTCATAAAA
chr6	4715802	4715803	chr6:4715803:T:C	rs3812178	T	C	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr6	4778270	4778271	chr6:4778271:A:G	rs6939203	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr6	4787376	4787377	chr6:4787377:C:T	rs6939773	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	6.195197301577001	CTCGTAAAT
chr6	6222148	6222149	chr6:6222149:T:G	rs5981	T	G	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr6	6605948	6605949	chr6:6605949:C:A	rs4959391	C	A	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.23329538277059	CTCATAAAA
chr6	6612414	6612415	chr6:6612415:G:A	rs6912864	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr6	6612431	6612432	chr6:6612432:C:T	rs58886198	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr6	6612432	6612433	chr6:6612433:G:T	rs12530050	G	T	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr6	6612437	6612438	chr6:6612438:C:T	rs2326812	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr6	6892097	6892098	chr6:6892098:G:A	rs17142654	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr6	6892115	6892116	chr6:6892116:T:A	rs73721932	T	A	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr6	6911744	6911745	chr6:6911745:G:A	rs12664736	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr6	6958013	6958014	chr6:6958014:T:C	rs2182276	T	C	t	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr6	7532415	7532416	chr6:7532416:C:T	rs1005396860	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr6	7698150	7698151	chr6:7698151:T:C	rs927415	T	C	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr6	9722367	9722368	chr6:9722368:G:C	rs10949267	G	C	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr6	10133751	10133752	chr6:10133752:A:G	rs9371110	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr6	10487068	10487069	chr6:10487069:G:A	rs496082	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr6	10492431	10492432	chr6:10492432:T:C	rs1675431	T	C	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr6	10492434	10492435	chr6:10492435:C:T	rs9366467	C	T	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr6	11969190	11969191	chr6:11969191:C:T	rs17676319	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr6	12544018	12544019	chr6:12544019:C:T	rs6907466	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr6	12793163	12793164	chr6:12793164:G:C	rs181532248	G	C	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr6	13279155	13279156	chr6:13279156:C:A	rs3817738	C	A	a	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr6	13474044	13474045	chr6:13474045:C:G	rs6458849	C	G	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr6	13712478	13712479	chr6:13712479:T:G	rs116343727	T	G	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr6	13927479	13927480	chr6:13927480:T:C	rs9349847	T	C	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr6	14144877	14144878	chr6:14144878:C:T	rs115253055	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr6	14944844	14944845	chr6:14944845:C:A	rs2045223	C	A	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr6	15086783	15086784	chr6:15086784:A:T	rs35734059	A	T	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr6	15364198	15364199	chr6:15364199:C:T	rs13195345	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr6	16180194	16180195	chr6:16180195:C:A	rs61221365	C	A	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr6	16230743	16230744	chr6:16230744:T:C	rs9477069	T	C	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr6	16398727	16398728	chr6:16398728:A:G	rs17591931	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	17225789	17225790	chr6:17225790:T:C	rs9370968	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr6	17744587	17744588	chr6:17744588:C:T	rs9367961	C	T	c	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr6	19805800	19805801	chr6:19805801:T:A	rs74573060	T	A	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr6	19805831	19805832	chr6:19805832:G:C	rs113592672	G	C	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr6	19805834	19805835	chr6:19805835:G:T	rs113894708	G	T	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr6	20244093	20244094	chr6:20244094:C:T	rs115814146	C	T	c	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr6	20319753	20319754	chr6:20319754:G:A	rs112450727	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	20524398	20524399	chr6:20524399:G:C	rs60728375	G	C	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr6	20795216	20795217	chr6:20795217:A:G	rs11751916	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr6	21499475	21499476	chr6:21499476:C:T	rs80068977	C	T	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr6	21679156	21679157	chr6:21679157:G:A	rs142701663	G	A	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr6	22749020	22749021	chr6:22749021:G:A	rs9466460	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.232433356227913	7.347292586060447	GTCGTTAAA
chr6	23138034	23138035	chr6:23138035:C:T	rs11756427	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr6	23201005	23201006	chr6:23201006:G:T	rs7771103	G	T	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr6	23898901	23898902	chr6:23898902:T:A	rs9358717	T	A	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr6	24721271	24721272	chr6:24721272:C:A	rs79930583	C	A	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr6	24721284	24721285	chr6:24721285:C:T	rs190995952	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr6	24803558	24803559	chr6:24803559:C:T	rs4076540	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr6	25015474	25015475	chr6:25015475:C:T	rs146698740	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr6	25649752	25649753	chr6:25649753:C:A	rs1883257	C	A	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr6	25764604	25764605	chr6:25764605:G:T	rs1892245	G	T	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr6	26184388	26184389	chr6:26184389:T:C	rs4496782	T	C	c	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr6	26189970	26189971	chr6:26189971:C:T	rs80259160	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	+	7.698915159352956	3.302718281316947	CCCGTAAAA
chr6	26206945	26206946	chr6:26206946:A:T	rs9393688	A	T	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr6	26206946	26206947	chr6:26206947:C:A	rs9379833	C	A	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr6	26206952	26206953	chr6:26206953:C:T	rs56186759	C	T	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr6	26225174	26225175	chr6:26225175:G:A	rs138589598	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr6	26277039	26277040	chr6:26277040:G:A	rs9358915	G	A	.	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr6	26365889	26365890	chr6:26365890:A:G	rs187574944	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr6	26379465	26379466	chr6:26379466:T:G	rs9467734	T	G	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr6	26379477	26379478	chr6:26379478:C:G	rs566019182	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	6.149902535056951	GTCGTAAAA
chr6	27127206	27127207	chr6:27127207:A:G	rs1031950242	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr6	27168440	27168441	chr6:27168441:C:T	rs188700137	C	T	c	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr6	27168445	27168446	chr6:27168446:A:G	rs13219181	A	G	a	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr6	27618370	27618371	chr6:27618371:C:G	rs61415880	C	G	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr6	27618401	27618402	chr6:27618402:G:A	rs9393829	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr6	27688452	27688453	chr6:27688453:A:G	rs1051146861	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr6	27688475	27688476	chr6:27688476:G:A	rs10946943	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr6	27688477	27688478	chr6:27688478:C:G	rs960334277	C	G	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr6	28334335	28334336	chr6:28334336:C:T	rs16893973	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.662713508931605	6.77757273876414	CTCGTAAAC
chr6	28489026	28489027	chr6:28489027:T:C	rs559623074	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.662713508931605	0.7942709473350096	CTCGTAAAC
chr6	28638825	28638826	chr6:28638826:T:C	rs10738069	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr6	28648288	28648289	chr6:28648289:T:A	rs911177	T	A	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr6	28648312	28648313	chr6:28648313:C:T	rs143333366	C	T	c	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr6	28757706	28757707	chr6:28757707:T:C	chr6:28757707:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr6	28757711	28757712	chr6:28757712:T:C	chr6:28757712:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr6	28872101	28872102	chr6:28872102:A:G	rs209160	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	29665877	29665878	chr6:29665878:G:C	rs2535252	G	C	-	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr6	29665896	29665897	chr6:29665897:G:A	rs2535251	G	A	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr6	29788818	29788819	chr6:29788819:G:A	rs116053943	G	A	g	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr6	29844949	29844950	chr6:29844950:C:T	rs72843667	C	T	-	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr6	30752637	30752638	chr6:30752638:A:G	rs963648751	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr6	30752789	30752790	chr6:30752790:C:T	rs17195754	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr6	30763297	30763298	chr6:30763298:G:A	rs76969411	G	A	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr6	30768373	30768374	chr6:30768374:C:T	rs12526186	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr6	30878318	30878319	chr6:30878319:C:G	rs9295929	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr6	31196485	31196486	chr6:31196486:A:G	rs150632192	A	G	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr6	31196493	31196494	chr6:31196494:G:A	rs6922994	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr6	31367788	31367789	chr6:31367789:C:T	rs9266395	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	31657729	31657730	chr6:31657730:G:T	rs707922	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr6	31852949	31852950	chr6:31852950:C:T	rs17201319	C	T	-	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr6	33110304	33110305	chr6:33110305:C:T	rs3128932	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr6	33299937	33299938	chr6:33299938:A:G	rs15604	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr6	33345385	33345386	chr6:33345386:C:T	rs139310843	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr6	34164427	34164428	chr6:34164428:T:C	rs13219419	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr6	34593807	34593808	chr6:34593808:A:G	rs205265	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr6	34593809	34593810	chr6:34593810:A:T	rs114325894	A	T	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr6	34865266	34865267	chr6:34865267:C:T	rs35173014	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr6	35568874	35568875	chr6:35568875:C:G	rs9296157	C	G	G	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr6	36235932	36235933	chr6:36235933:C:T	rs9462164	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr6	36393285	36393286	chr6:36393286:C:T	rs76676074	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr6	36477115	36477116	chr6:36477116:A:G	rs189731990	A	G	A	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr6	36655305	36655306	chr6:36655306:A:G	rs12530170	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	8.420043757940196	5.2574698930292145	GTCATAAAA
chr6	37055678	37055679	chr6:37055679:C:A	rs77914389	C	A	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr6	37314879	37314880	chr6:37314880:G:A	rs149702	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr6	37434293	37434294	chr6:37434294:C:G	rs2646933	C	G	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr6	38156302	38156303	chr6:38156303:A:G	rs2395692	A	G	a	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr6	38364266	38364267	chr6:38364267:G:A	rs9357268	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr6	39019715	39019716	chr6:39019716:A:T	rs13201998	A	T	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr6	39119084	39119085	chr6:39119085:A:G	rs114746715	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	39488510	39488511	chr6:39488511:A:T	rs1546911	A	T	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr6	40265766	40265767	chr6:40265767:C:T	rs1325548	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr6	40650008	40650009	chr6:40650009:C:T	rs12526157	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr6	40733032	40733033	chr6:40733033:C:T	rs7756298	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr6	40997744	40997745	chr6:40997745:T:C	rs190252756	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.016968795292732	CTCATAAAA
chr6	41001041	41001042	chr6:41001042:T:A	rs6458194	T	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr6	41204516	41204517	chr6:41204517:A:G	rs9471504	A	G	-	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr6	41204524	41204525	chr6:41204525:T:A	rs9471505	T	A	-	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr6	41385179	41385180	chr6:41385180:T:C	rs623514	T	C	C	Hoxd9.mouse_homeodomain_3	6	1	-	7.698915159352956	3.720935185034721	CCCGTAAAA
chr6	41949812	41949813	chr6:41949813:G:A	rs970881499	G	A	g	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	42039175	42039176	chr6:42039176:C:T	rs117075283	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr6	42039219	42039220	chr6:42039220:G:T	rs73733074	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr6	42569417	42569418	chr6:42569418:C:T	rs72861130	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	42929335	42929336	chr6:42929336:T:C	rs2234185	T	C	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr6	43715479	43715480	chr6:43715480:T:C	rs74606979	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr6	44386903	44386904	chr6:44386904:C:T	rs992160	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr6	44564601	44564602	chr6:44564602:G:A	rs118180231	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	45196403	45196404	chr6:45196404:T:C	rs1285012	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	45728747	45728748	chr6:45728748:C:G	rs1008341480	C	G	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr6	46453920	46453921	chr6:46453921:C:T	rs780025551	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.662713508931605	6.268873658112532	CTCGTAAAC
chr6	47685748	47685749	chr6:47685749:A:G	rs9369736	A	G	G	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr6	47722330	47722331	chr6:47722331:A:G	rs7752444	A	G	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr6	48045064	48045065	chr6:48045065:C:A	rs75067380	C	A	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr6	52725151	52725152	chr6:52725152:A:C	rs149319663	A	C	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr6	52787530	52787531	chr6:52787531:C:A	rs55999189	C	A	N	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr6	52787541	52787542	chr6:52787542:T:C	rs1986661	T	C	N	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr6	53810316	53810317	chr6:53810317:G:A	rs4276504	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr6	54004651	54004652	chr6:54004652:C:T	rs1409104	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr6	54731330	54731331	chr6:54731331:A:G	rs67799698	A	G	a	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr6	56451817	56451818	chr6:56451818:C:T	rs143434070	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr6	56908696	56908697	chr6:56908697:A:G	rs1903331	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr6	61419547	61419548	chr6:61419548:G:A	rs1451221001	G	A	.	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr6	62617342	62617343	chr6:62617343:C:T	rs1113362	C	T	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	63000096	63000097	chr6:63000097:T:G	rs2226071	T	G	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr6	63373554	63373555	chr6:63373555:G:A	rs2677023	G	A	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr6	63572099	63572100	chr6:63572100:C:G	rs548993805	C	G	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr6	63572113	63572114	chr6:63572114:C:T	rs147916244	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr6	64049859	64049860	chr6:64049860:C:T	rs35524411	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr6	64258753	64258754	chr6:64258754:G:A	rs9362645	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	64930696	64930697	chr6:64930697:G:T	rs1570489	G	T	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr6	65450395	65450396	chr6:65450396:G:A	rs9345631	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr6	65628573	65628574	chr6:65628574:G:A	rs6930269	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr6	65725766	65725767	chr6:65725767:A:G	rs77612870	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr6	67536116	67536117	chr6:67536117:C:T	rs115226771	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr6	67801977	67801978	chr6:67801978:C:A	rs67230613	C	A	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr6	70221231	70221232	chr6:70221232:G:A	rs79979095	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr6	70377387	70377388	chr6:70377388:C:T	rs3909058	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr6	72412355	72412356	chr6:72412356:A:G	rs144905339	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr6	72523977	72523978	chr6:72523978:A:G	rs68186765	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr6	72827273	72827274	chr6:72827274:A:G	rs3005767	A	G	a	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr6	72827280	72827281	chr6:72827281:G:A	rs75903302	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr6	73807628	73807629	chr6:73807629:G:A	rs4708090	G	A	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	74114247	74114248	chr6:74114248:A:G	rs7753095	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	74151931	74151932	chr6:74151932:T:C	rs4642430	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr6	74694904	74694905	chr6:74694905:G:C	rs34110489	G	C	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr6	75602092	75602093	chr6:75602093:T:G	rs879183803	T	G	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr6	76616106	76616107	chr6:76616107:G:A	rs9350665	G	A	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr6	76708891	76708892	chr6:76708892:A:C	rs1350405	A	C	C	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	6.291125849088757	GTCATAAAA
chr6	76708896	76708897	chr6:76708897:G:T	rs12523833	G	T	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr6	76774171	76774172	chr6:76774172:C:G	rs9361132	C	G	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr6	77296088	77296089	chr6:77296089:C:A	rs9448056	C	A	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr6	79539273	79539274	chr6:79539274:A:G	rs16890835	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr6	79868519	79868520	chr6:79868520:A:C	rs62411143	A	C	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	80908281	80908282	chr6:80908282:G:T	rs517393	G	T	t	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	6.589040073520056	GTCGTAAAA
chr6	81003235	81003236	chr6:81003236:A:T	rs7746955	A	T	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr6	81003256	81003257	chr6:81003257:T:C	rs7767338	T	C	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr6	82066838	82066839	chr6:82066839:G:A	rs1418293	G	A	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr6	82481489	82481490	chr6:82481490:A:G	rs2983865	A	G	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr6	82567805	82567806	chr6:82567806:G:T	rs1436225	G	T	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	82955342	82955343	chr6:82955343:T:C	rs12193379	T	C	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr6	82955358	82955359	chr6:82955359:C:T	rs150311155	C	T	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr6	84521840	84521841	chr6:84521841:T:C	rs79343088	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr6	84653990	84653991	chr6:84653991:G:A	rs12198443	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr6	85192866	85192867	chr6:85192867:A:G	rs9444303	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	7.994948769610968	4.016968795292732	CTCATAAAA
chr6	85866463	85866464	chr6:85866464:C:T	chr6:85866464:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr6	87071005	87071006	chr6:87071006:T:C	rs9353446	T	C	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr6	87071018	87071019	chr6:87071019:G:T	rs9359727	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.802115875352188	2.980824008986951	GTCGTAAAG
chr6	88574624	88574625	chr6:88574625:A:G	rs187067605	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr6	89946587	89946588	chr6:89946588:C:T	rs3173197	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr6	90194270	90194271	chr6:90194271:T:C	rs2064870	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.420043757940196	1.5516011963436003	GTCATAAAA
chr6	90274130	90274131	chr6:90274131:A:T	rs905671	A	T	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr6	90296215	90296216	chr6:90296216:G:A	rs927475860	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr6	90296240	90296241	chr6:90296241:G:A	rs916884614	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr6	90462308	90462309	chr6:90462309:C:T	rs791043	C	T	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr6	90700677	90700678	chr6:90700678:C:A	rs1145740	C	A	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr6	90955014	90955015	chr6:90955015:C:T	rs62408492	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.662713508931605	6.268873658112532	CTCGTAAAC
chr6	92022852	92022853	chr6:92022853:C:A	rs1948453	C	A	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr6	93089621	93089622	chr6:93089622:G:A	rs145829778	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr6	93261044	93261045	chr6:93261045:G:A	rs74914275	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr6	93779554	93779555	chr6:93779555:G:T	rs79029725	G	T	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr6	93820151	93820152	chr6:93820152:C:T	rs1414612	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr6	94256369	94256370	chr6:94256370:T:G	rs13214005	T	G	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr6	94651858	94651859	chr6:94651859:A:G	rs2502019	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr6	95591689	95591690	chr6:95591690:C:G	rs6568937	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr6	97045938	97045939	chr6:97045939:G:A	rs946116	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr6	97305698	97305699	chr6:97305699:T:C	rs876012	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr6	98788032	98788033	chr6:98788033:T:C	rs9375642	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr6	100727137	100727138	chr6:100727138:C:T	rs13208757	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr6	100891101	100891102	chr6:100891102:T:C	rs6919745	T	C	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	101178824	101178825	chr6:101178825:T:A	rs17061488	T	A	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr6	101178851	101178852	chr6:101178852:G:A	rs72950915	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr6	101413929	101413930	chr6:101413930:T:C	rs1856307	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr6	103532835	103532836	chr6:103532836:C:A	rs148052274	C	A	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr6	104241904	104241905	chr6:104241905:C:G	rs6930332	C	G	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	104302249	104302250	chr6:104302250:G:A	rs76698665	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr6	104722505	104722506	chr6:104722506:G:T	rs7743022	G	T	T	Hoxd9.mouse_homeodomain_3	2	1	-	8.69304884965439	6.931395462814012	ATCGTAAAA
chr6	105223383	105223384	chr6:105223384:G:A	rs57705248	G	A	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr6	105459506	105459507	chr6:105459507:T:C	rs9486104	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr6	105459546	105459547	chr6:105459547:A:T	rs12200713	A	T	a	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr6	106112669	106112670	chr6:106112670:C:T	rs9373832	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr6	106112682	106112683	chr6:106112683:T:A	rs79918777	T	A	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr6	106148809	106148810	chr6:106148810:G:A	rs9399974	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr6	107675145	107675146	chr6:107675146:A:G	rs846992	A	G	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr6	107675185	107675186	chr6:107675186:A:C	rs199792539	A	C	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr6	108094174	108094175	chr6:108094175:T:A	rs112109802	T	A	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	5.442013759327832	CTCATAAAA
chr6	108094187	108094188	chr6:108094188:T:C	rs4946900	T	C	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr6	108728403	108728404	chr6:108728404:A:G	rs6910666	A	G	a	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr6	108728416	108728417	chr6:108728417:G:A	rs12212343	G	A	g	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr6	108941775	108941776	chr6:108941776:G:T	rs911476	G	T	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr6	109304643	109304644	chr6:109304644:T:C	rs76863671	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.232433356227913	7.051258975802436	GTCGTTAAA
chr6	111691583	111691584	chr6:111691584:C:T	rs77442349	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr6	111759947	111759948	chr6:111759948:G:A	rs1367214770	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr6	111919231	111919232	chr6:111919232:G:A	rs150917870	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr6	111995080	111995081	chr6:111995081:G:A	rs6935837	G	A	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr6	112231922	112231923	chr6:112231923:C:A	rs953224908	C	A	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr6	113074309	113074310	chr6:113074310:A:T	rs6935658	A	T	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr6	113126651	113126652	chr6:113126652:G:T	rs1406835	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	4.9827707047653504	CCCGTAAAA
chr6	113126657	113126658	chr6:113126658:G:C	rs1406834	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr6	113292409	113292410	chr6:113292410:T:C	rs117549274	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	6.916975105184722	GTCATAAAA
chr6	113995831	113995832	chr6:113995832:A:G	rs976102915	A	G	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr6	116462291	116462292	chr6:116462292:C:T	rs1027902364	C	T	c	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr6	116878227	116878228	chr6:116878228:C:T	rs11754683	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr6	116888888	116888889	chr6:116888889:T:C	rs339331	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.994948769610968	1.3794058091671437	CTCATAAAA
chr6	117263244	117263245	chr6:117263245:T:C	rs35998625	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr6	118228873	118228874	chr6:118228874:G:A	rs12530285	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	6.291125849088757	GGCGTAAAA
chr6	118784253	118784254	chr6:118784254:T:C	rs17080617	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	7.238869377514717	GTCATAAAA
chr6	119274379	119274380	chr6:119274380:T:C	rs17514279	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.589037152396075	0.7205945907994784	CTCGTAAAT
chr6	120212387	120212388	chr6:120212388:A:G	rs1535590	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr6	120354164	120354165	chr6:120354165:A:C	rs922700886	A	C	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	120522624	120522625	chr6:120522625:C:T	rs9489977	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr6	121868013	121868014	chr6:121868014:T:G	rs12175261	T	G	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr6	122181265	122181266	chr6:122181266:C:T	rs117450615	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr6	122838690	122838691	chr6:122838691:A:G	rs7454596	A	G	G	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	6.813774389185489	CTCATAAAA
chr6	124854466	124854467	chr6:124854467:T:A	rs140044454	T	A	T	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr6	124888038	124888039	chr6:124888039:C:T	rs57535821	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	6.906634116835357	5.512794266016282	GCCGTAAAC
chr6	125108284	125108285	chr6:125108285:G:T	rs525480	G	T	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr6	126947351	126947352	chr6:126947352:C:T	rs9385413	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr6	127160862	127160863	chr6:127160863:C:A	rs9491700	C	A	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr6	127344717	127344718	chr6:127344718:G:A	rs9398839	G	A	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr6	127972488	127972489	chr6:127972489:C:T	rs9482851	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr6	128059714	128059715	chr6:128059715:G:C	chr6:128059715:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr6	128059722	128059723	chr6:128059723:G:C	chr6:128059723:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr6	128892067	128892068	chr6:128892068:C:T	rs34258391	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr6	129073861	129073862	chr6:129073862:C:A	rs74810388	C	A	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr6	129133856	129133857	chr6:129133857:G:C	rs78886700	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr6	129212178	129212179	chr6:129212179:T:G	rs377258	T	G	T	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr6	129611748	129611749	chr6:129611749:T:C	rs7753754	T	C	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr6	129699804	129699805	chr6:129699805:T:C	rs1894641	T	C	C	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	1.1265062080143724	CTCATAAAA
chr6	129751697	129751698	chr6:129751698:G:C	rs208866	G	C	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr6	129995342	129995343	chr6:129995343:C:T	rs9402208	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr6	130592600	130592601	chr6:130592601:G:A	rs58599195	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr6	130602435	130602436	chr6:130602436:C:T	rs922378186	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	130708525	130708526	chr6:130708526:A:G	rs9492699	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	130958648	130958649	chr6:130958649:T:C	rs73621523	T	C	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr6	130992471	130992472	chr6:130992472:C:A	rs66491359	C	A	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr6	131177462	131177463	chr6:131177463:G:A	rs1534625	G	A	N	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr6	131177468	131177469	chr6:131177469:G:A	rs76279194	G	A	N	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr6	131728366	131728367	chr6:131728367:G:A	rs17185166	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr6	132320104	132320105	chr6:132320105:T:A	rs668365	T	A	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr6	132439966	132439967	chr6:132439967:C:G	rs9402407	C	G	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr6	132527965	132527966	chr6:132527966:T:G	rs190820066	T	G	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr6	132898467	132898468	chr6:132898468:T:G	rs583847	T	G	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.2900197045022255	CTCATAAAA
chr6	133973535	133973536	chr6:133973536:A:G	rs72982279	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr6	135880093	135880094	chr6:135880094:C:T	rs575132190	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr6	136429979	136429980	chr6:136429980:G:A	rs997139	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.087808497260832	6.69396864644176	GTCGTAAAC
chr6	137603127	137603128	chr6:137603128:C:T	rs1336512	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	7.911344677288588	GTCGTAAAA
chr6	137626070	137626071	chr6:137626071:G:A	rs620607	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr6	138293710	138293711	chr6:138293711:T:G	rs74596233	T	G	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr6	139494862	139494863	chr6:139494863:G:A	rs9389691	G	A	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr6	139978234	139978235	chr6:139978235:C:T	rs75482192	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr6	139978243	139978244	chr6:139978244:A:G	rs62429518	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr6	140850285	140850286	chr6:140850286:C:T	rs685606	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr6	142169073	142169074	chr6:142169074:A:T	rs11758623	A	T	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	142694471	142694472	chr6:142694472:G:T	rs182600914	G	T	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr6	143750872	143750873	chr6:143750873:T:C	rs736784	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr6	144624781	144624782	chr6:144624782:G:A	rs79984416	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.983181036203886	CTCGTAAAG
chr6	144740943	144740944	chr6:144740944:G:A	rs4419685	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr6	144759566	144759567	chr6:144759567:G:A	rs56901236	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr6	144878353	144878354	chr6:144878354:A:G	rs73779401	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	144897571	144897572	chr6:144897572:G:A	rs9399520	G	A	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr6	145070867	145070868	chr6:145070868:C:T	rs75772549	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr6	145734183	145734184	chr6:145734184:A:G	rs115410184	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr6	146805723	146805724	chr6:146805724:C:T	rs113548174	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr6	146805737	146805738	chr6:146805738:T:C	rs9390422	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr6	147508936	147508937	chr6:147508937:C:T	rs66812182	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr6	148342211	148342212	chr6:148342212:T:C	rs571556549	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr6	148389663	148389664	chr6:148389664:A:G	rs9498028	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	148389685	148389686	chr6:148389686:T:G	rs7751392	T	G	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr6	148438570	148438571	chr6:148438571:G:T	rs4895754	G	T	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr6	148653304	148653305	chr6:148653305:C:T	chr6:148653305:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr6	148760960	148760961	chr6:148760961:G:A	rs17645337	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr6	149094467	149094468	chr6:149094468:G:A	rs10457842	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr6	149121548	149121549	chr6:149121549:A:G	rs7766254	A	G	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr6	149566576	149566577	chr6:149566577:T:C	rs9485403	T	C	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr6	150290337	150290338	chr6:150290338:T:C	rs9383763	T	C	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr6	150623327	150623328	chr6:150623328:T:G	rs145078917	T	G	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr6	150695887	150695888	chr6:150695888:A:G	rs11155746	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr6	150695889	150695890	chr6:150695890:A:G	rs11155747	A	G	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr6	150723495	150723496	chr6:150723496:A:T	rs75333451	A	T	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	5.442013759327832	CTCATAAAA
chr6	150723879	150723880	chr6:150723880:T:C	rs6937891	T	C	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr6	151042295	151042296	chr6:151042296:A:G	rs7765575	A	G	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr6	153425187	153425188	chr6:153425188:G:A	rs539006443	G	A	g	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr6	154250307	154250308	chr6:154250308:T:C	rs547383859	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr6	154555201	154555202	chr6:154555202:G:A	rs145336655	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	154693569	154693570	chr6:154693570:C:G	rs9479940	C	G	G	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr6	155024450	155024451	chr6:155024451:G:A	rs147172132	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr6	155054854	155054855	chr6:155054855:T:G	rs7774757	T	G	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.420043757940196	5.254136976905022	GTCATAAAA
chr6	155432682	155432683	chr6:155432683:C:T	rs60360826	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	3.5987518915749583	CTCATAAAA
chr6	155745638	155745639	chr6:155745639:T:C	rs9322535	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	157067480	157067481	chr6:157067481:G:A	rs9480424	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr6	157226271	157226272	chr6:157226272:C:T	rs138576963	C	T	c	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr6	157226274	157226275	chr6:157226275:C:A	rs6605512	C	A	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr6	157264869	157264870	chr6:157264870:G:A	rs150501855	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	6.906634116835357	5.512794266016282	GCCGTAAAC
chr6	157298531	157298532	chr6:157298532:C:A	rs9347823	C	A	.	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr6	157434553	157434554	chr6:157434554:G:C	rs17165327	G	C	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr6	157499107	157499108	chr6:157499108:T:A	rs112335547	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr6	157637512	157637513	chr6:157637513:C:T	rs618823	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr6	157966375	157966376	chr6:157966376:C:A	rs11755350	C	A	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr6	158457274	158457275	chr6:158457275:A:G	rs652114	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr6	158560776	158560777	chr6:158560777:T:A	rs73012185	T	A	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr6	158560789	158560790	chr6:158560790:C:T	rs149200307	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr6	158810915	158810916	chr6:158810916:C:T	rs3123133	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr6	158847102	158847103	chr6:158847103:C:T	rs79260389	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr6	159001430	159001431	chr6:159001431:C:G	rs12192618	C	G	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr6	159564823	159564824	chr6:159564824:G:A	rs240874	G	A	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr6	159683053	159683054	chr6:159683054:G:A	rs55642860	G	A	G	Hoxd9.mouse_homeodomain_3	8	1	-	7.662713508931605	7.589037152396075	CTCGTAAAC
chr6	159740595	159740596	chr6:159740596:T:C	rs6899987	T	C	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr6	161048741	161048742	chr6:161048742:G:A	rs4559074	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr6	161113300	161113301	chr6:161113301:T:C	rs9355872	T	C	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.232433356227913	6.729364703472439	GTCGTTAAA
chr6	161211620	161211621	chr6:161211621:G:A	chr6:161211621:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr6	161211629	161211630	chr6:161211630:A:T	rs4709503	A	T	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr6	161985496	161985497	chr6:161985497:A:G	rs55672112	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr6	162230898	162230899	chr6:162230899:C:T	rs6926858	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr6	162544205	162544206	chr6:162544206:G:C	rs2803071	G	C	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr6	162724834	162724835	chr6:162724835:G:A	rs35537826	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr6	165953020	165953021	chr6:165953021:A:G	rs705790	A	G	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr6	166561901	166561902	chr6:166561902:C:T	rs2032546	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr6	166610209	166610210	chr6:166610210:T:C	rs16899238	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr6	166772782	166772783	chr6:166772783:T:C	rs76168680	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr6	166775093	166775094	chr6:166775094:C:T	rs17518936	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr6	167506980	167506981	chr6:167506981:G:A	rs374035818	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	6.77757273876414	CTCGTAAAC
chr6	167520465	167520466	chr6:167520466:G:C	rs143006933	G	C	G	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr6	167645135	167645136	chr6:167645136:C:T	rs150771537	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr6	167768542	167768543	chr6:167768543:C:T	rs182136386	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr6	167924992	167924993	chr6:167924993:T:C	rs610670	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr6	168128007	168128008	chr6:168128008:G:A	rs4708661	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr6	168152513	168152514	chr6:168152514:A:C	rs12197691	A	C	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr6	168152546	168152547	chr6:168152547:C:T	rs6938319	C	T	c	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr6	168165525	168165526	chr6:168165526:C:A	rs9346661	C	A	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr6	168165528	168165529	chr6:168165529:T:A	rs9364411	T	A	T	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr6	168310426	168310427	chr6:168310427:G:A	rs111574499	G	A	g	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr6	168908452	168908453	chr6:168908453:A:T	rs11753583	A	T	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr6	168964494	168964495	chr6:168964495:T:G	rs118012945	T	G	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr6	168972645	168972646	chr6:168972646:G:A	rs115754929	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr6	169021656	169021657	chr6:169021657:C:T	rs17182351	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	6.906634116835357	6.021493346667889	GCCGTAAAC
chr6	169070826	169070827	chr6:169070827:G:A	rs379469	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr6	169174472	169174473	chr6:169174473:T:C	rs1888835	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr6	169398064	169398065	chr6:169398065:G:A	rs2981943	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr6	169628563	169628564	chr6:169628564:C:T	rs73239092	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.48624968895936	CTCGTAAAA
chr6	170005875	170005876	chr6:170005876:C:T	rs921855793	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr7	301386	301387	chr7:301387:T:C	rs148506707	T	C	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr7	370482	370483	chr7:370483:A:G	rs36157753	A	G	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr7	776859	776860	chr7:776860:A:G	rs4301349	A	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr7	805456	805457	chr7:805457:G:A	rs73038184	G	A	-	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr7	808559	808560	chr7:808560:T:C	rs4719437	T	C	N	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr7	982485	982486	chr7:982486:G:T	rs190529415	G	T	g	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr7	982494	982495	chr7:982495:C:A	rs111601777	C	A	c	Hoxd9.mouse_homeodomain_3	8	1	+	7.662713508931605	8.880089539778433	CTCGTAAAC
chr7	1241975	1241976	chr7:1241976:C:T	rs147905320	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr7	1304349	1304350	chr7:1304350:T:C	rs10952024	T	C	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr7	1366126	1366127	chr7:1366127:T:C	rs185366651	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr7	1899142	1899143	chr7:1899143:C:T	rs6460996	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr7	2086512	2086513	chr7:2086513:G:A	rs1309835000	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr7	2242976	2242977	chr7:2242977:T:C	rs1139425	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr7	2259496	2259497	chr7:2259497:G:C	rs73043233	G	C	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	1.1387476664487979	CCCGTAAAA
chr7	2373693	2373694	chr7:2373694:G:T	rs3807432	G	T	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr7	2525944	2525945	chr7:2525945:G:A	rs62444251	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr7	2735144	2735145	chr7:2735145:C:T	rs141582036	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr7	2904393	2904394	chr7:2904394:G:A	rs73035294	G	A	A	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.983181036203886	CTCGTAAAG
chr7	3005158	3005159	chr7:3005159:G:A	rs10950988	G	A	g	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr7	3005163	3005164	chr7:3005164:C:T	rs10950989	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr7	3014463	3014464	chr7:3014464:T:C	rs12671372	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr7	3591482	3591483	chr7:3591483:T:C	rs10951255	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr7	3710659	3710660	chr7:3710660:T:C	rs10263462	T	C	C	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr7	4075324	4075325	chr7:4075325:C:T	rs140394351	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.087808497260832	7.202667727093368	GTCGTAAAC
chr7	4075333	4075334	chr7:4075334:A:C	rs150365209	A	C	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr7	4228034	4228035	chr7:4228035:A:G	rs143019999	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr7	4228042	4228043	chr7:4228043:C:T	rs112848736	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr7	4307474	4307475	chr7:4307475:C:G	rs1859533	C	G	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr7	4344518	4344519	chr7:4344519:A:G	rs10268830	A	G	G	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr7	4390813	4390814	chr7:4390814:G:C	rs10228485	G	C	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr7	4493726	4493727	chr7:4493727:T:C	chr7:4493727:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr7	4709725	4709726	chr7:4709726:G:A	rs11971996	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr7	4763843	4763844	chr7:4763844:G:A	rs74545816	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr7	5235506	5235507	chr7:5235507:C:T	rs73048065	C	T	c	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr7	5413124	5413125	chr7:5413125:C:T	rs4628168	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr7	6092506	6092507	chr7:6092507:G:T	rs78808269	G	T	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	3.0900528109233516	GTTGTAAAA
chr7	6279981	6279982	chr7:6279982:C:T	rs74568009	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr7	7101179	7101180	chr7:7101180:T:C	rs1347026	T	C	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr7	7263575	7263576	chr7:7263576:C:T	rs112003126	C	T	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr7	7789623	7789624	chr7:7789624:T:C	rs56120863	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr7	8176033	8176034	chr7:8176034:C:T	rs144682036	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr7	8202410	8202411	chr7:8202411:T:A	rs3779366	T	A	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr7	8213206	8213207	chr7:8213207:C:G	rs3757511	C	G	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr7	9029940	9029941	chr7:9029941:G:A	rs67279347	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr7	9029958	9029959	chr7:9029959:G:T	rs71534633	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	4.660876432435354	CTCGTAAAG
chr7	9190251	9190252	chr7:9190252:T:C	rs17160303	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr7	9193297	9193298	chr7:9193298:T:C	rs6950672	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr7	9210361	9210362	chr7:9210362:T:G	rs1285383	T	G	T	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr7	9596659	9596660	chr7:9596660:A:T	rs2657242	A	T	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr7	11211521	11211522	chr7:11211522:G:A	rs12699177	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr7	11211531	11211532	chr7:11211532:A:C	rs542033985	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.911344677288588	4.745437896253414	GTTGTAAAA
chr7	11329777	11329778	chr7:11329778:A:G	rs916906	A	G	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr7	11329801	11329802	chr7:11329802:G:C	rs916907	G	C	C	Hoxd9.mouse_homeodomain_3	2	1	-	7.176266619256224	0.616099126352066	GGCGTAAAA
chr7	11540351	11540352	chr7:11540352:A:C	rs12699206	A	C	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr7	11557583	11557584	chr7:11557584:C:T	rs6460826	C	T	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr7	11557591	11557592	chr7:11557592:T:A	rs6460827	T	A	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr7	12129306	12129307	chr7:12129307:T:C	rs4236267	T	C	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr7	12494014	12494015	chr7:12494015:T:C	rs16877467	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr7	12494028	12494029	chr7:12494029:T:C	rs1550393	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr7	12737682	12737683	chr7:12737683:A:G	rs1524937	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr7	12873890	12873891	chr7:12873891:G:A	rs758675	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr7	13191439	13191440	chr7:13191440:A:G	rs12672883	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr7	13420860	13420861	chr7:13420861:A:C	rs10479915	A	C	a	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr7	13656273	13656274	chr7:13656274:T:A	rs4719373	T	A	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr7	13796462	13796463	chr7:13796463:T:C	rs2051929	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr7	13939019	13939020	chr7:13939020:C:T	rs3801098	C	T	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr7	13939022	13939023	chr7:13939023:T:A	rs3801099	T	A	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr7	14144334	14144335	chr7:14144335:G:A	rs2190384	G	A	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr7	14269239	14269240	chr7:14269240:C:A	rs38262	C	A	C	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	6.589040073520056	GTCGTAAAA
chr7	15431866	15431867	chr7:15431867:T:C	rs4637710	T	C	c	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr7	15747223	15747224	chr7:15747224:C:T	rs937509012	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr7	16348020	16348021	chr7:16348021:T:G	rs77301988	T	G	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr7	16348034	16348035	chr7:16348035:C:T	rs760761811	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	7.128991370557837	GTCGTAAAT
chr7	16740346	16740347	chr7:16740347:G:T	rs6968207	G	T	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.118436152938057	CTCGTAAAA
chr7	16756906	16756907	chr7:16756907:G:T	rs818806	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.176266619256224	4.4601221646686176	GGCGTAAAA
chr7	16768846	16768847	chr7:16768847:G:A	rs7805673	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr7	16836705	16836706	chr7:16836706:C:T	rs10270767	C	T	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr7	16836720	16836721	chr7:16836721:C:A	rs10270773	C	A	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	5.195200222700982	GTTGTAAAA
chr7	17069652	17069653	chr7:17069653:G:A	rs13224356	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr7	17524615	17524616	chr7:17524616:G:A	rs6963891	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr7	17590373	17590374	chr7:17590374:G:T	rs1375242	G	T	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr7	17599034	17599035	chr7:17599035:T:C	rs182617450	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.911344677288588	4.748770812377607	GTTGTAAAA
chr7	17984445	17984446	chr7:17984446:A:G	rs191755227	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr7	18292729	18292730	chr7:18292730:G:A	rs13232015	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr7	19020461	19020462	chr7:19020462:A:G	rs140180992	A	G	a	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr7	19112333	19112334	chr7:19112334:G:T	rs147851709	G	T	g	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr7	19681158	19681159	chr7:19681159:T:C	rs12532153	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr7	19709076	19709077	chr7:19709077:G:A	rs2072185	G	A	A	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr7	20443137	20443138	chr7:20443138:G:C	rs542957577	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.48624968895936	GTTGTAAAA
chr7	20575063	20575064	chr7:20575064:A:G	rs17143086	A	G	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	20594112	20594113	chr7:20594113:G:A	rs10950819	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr7	20700048	20700049	chr7:20700049:G:A	rs12700230	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr7	20747649	20747650	chr7:20747650:C:T	rs6461517	C	T	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr7	20751143	20751144	chr7:20751144:A:G	rs4721944	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr7	21169447	21169448	chr7:21169448:C:G	rs12700261	C	G	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr7	22225965	22225966	chr7:22225966:A:G	rs1476689	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr7	22343223	22343224	chr7:22343224:T:C	rs12670930	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr7	23105193	23105194	chr7:23105194:A:G	rs79357375	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr7	23383271	23383272	chr7:23383272:T:C	rs62468243	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr7	24439272	24439273	chr7:24439273:T:G	rs77408165	T	G	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.124010147682185	6.906634116835357	GCCGTAAAA
chr7	24713345	24713346	chr7:24713346:G:C	rs73288048	G	C	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	24755399	24755400	chr7:24755400:G:C	rs12700545	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr7	24885376	24885377	chr7:24885377:C:T	rs79006078	C	T	c	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr7	24950081	24950082	chr7:24950082:A:G	rs180724912	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr7	24950089	24950090	chr7:24950090:A:G	rs17150612	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	8.420043757940196	4.44206378362196	GTCATAAAA
chr7	25210553	25210554	chr7:25210554:A:G	rs10215293	A	G	a	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr7	26525873	26525874	chr7:26525874:A:G	rs6979763	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr7	26619062	26619063	chr7:26619063:C:T	rs6461958	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr7	26681993	26681994	chr7:26681994:C:T	rs212846	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr7	26682015	26682016	chr7:26682016:A:C	rs114268907	A	C	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr7	26805525	26805526	chr7:26805526:C:T	rs567124	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr7	26891585	26891586	chr7:26891586:T:A	rs12530718	T	A	T	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr7	27170559	27170560	chr7:27170560:G:A	rs17472203	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr7	27210757	27210758	chr7:27210758:A:G	rs17428012	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	27521347	27521348	chr7:27521348:T:C	rs138407225	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr7	27521370	27521371	chr7:27521371:G:A	rs940526	G	A	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr7	27532325	27532326	chr7:27532326:A:G	rs11767188	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr7	27739360	27739361	chr7:27739361:T:C	rs6952476	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr7	28037419	28037420	chr7:28037420:C:T	rs117438149	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	28132966	28132967	chr7:28132967:T:C	rs917115	T	C	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr7	28272125	28272126	chr7:28272126:G:A	rs177473	G	A	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr7	28355744	28355745	chr7:28355745:A:C	chr7:28355745:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr7	28725531	28725532	chr7:28725532:G:A	rs10258977	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr7	29118411	29118412	chr7:29118412:C:T	rs6965160	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.232433356227913	7.347292586060447	GTCGTTAAA
chr7	29300883	29300884	chr7:29300884:T:C	rs6946540	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr7	30157702	30157703	chr7:30157703:A:G	rs953720584	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr7	30232695	30232696	chr7:30232696:A:C	rs80240249	A	C	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr7	30286100	30286101	chr7:30286101:A:T	rs146773083	A	T	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr7	30345017	30345018	chr7:30345018:T:C	rs149503664	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr7	30348672	30348673	chr7:30348673:G:A	rs149133722	G	A	G	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr7	30479059	30479060	chr7:30479060:T:G	rs189610105	T	G	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr7	30479068	30479069	chr7:30479069:G:C	rs116052197	G	C	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	5.724807546727723	CTCGTAAAA
chr7	30521909	30521910	chr7:30521910:C:G	rs38439	C	G	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.48624968895936	GTTGTAAAA
chr7	30751348	30751349	chr7:30751349:T:C	rs78550980	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr7	30751361	30751362	chr7:30751362:T:C	rs741872	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr7	30896408	30896409	chr7:30896409:T:C	rs12112389	T	C	C	Hoxd9.mouse_homeodomain_3	5	1	-	7.176266619256224	0.5607236588124002	GGCGTAAAA
chr7	31137265	31137266	chr7:31137266:T:C	rs58394139	T	C	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr7	32059978	32059979	chr7:32059979:C:A	rs74965060	C	A	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr7	32263726	32263727	chr7:32263727:T:C	rs7806397	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr7	32536818	32536819	chr7:32536819:C:T	rs787212	C	T	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr7	33178701	33178702	chr7:33178702:T:C	rs10274959	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr7	33551167	33551168	chr7:33551168:G:A	rs2392247	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr7	34573953	34573954	chr7:34573954:A:G	rs17169870	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr7	34953022	34953023	chr7:34953023:A:G	rs1649228	A	G	.	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr7	35546523	35546524	chr7:35546524:G:A	rs6972740	G	A	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr7	35553287	35553288	chr7:35553288:C:T	rs117587139	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr7	35617459	35617460	chr7:35617460:T:C	rs4723439	T	C	T	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr7	36013289	36013290	chr7:36013290:G:A	rs112212379	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr7	36151966	36151967	chr7:36151967:A:C	rs2726105	A	C	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr7	36592145	36592146	chr7:36592146:T:C	rs17170642	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr7	36593016	36593017	chr7:36593017:G:A	rs2718175	G	A	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	36881379	36881380	chr7:36881380:C:T	rs3778710	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr7	37150269	37150270	chr7:37150270:C:T	rs6967682	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr7	37355111	37355112	chr7:37355112:C:G	rs77144276	C	G	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr7	37356163	37356164	chr7:37356164:G:C	rs2700981	G	C	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr7	38550916	38550917	chr7:38550917:G:A	rs62444217	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	9.305184528107661	8.420043757940196	GTCGTAAAA
chr7	39017048	39017049	chr7:39017049:G:A	rs62443626	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr7	39201200	39201201	chr7:39201201:C:G	rs6955794	C	G	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.48624968895936	GTTGTAAAA
chr7	39294057	39294058	chr7:39294058:T:G	rs3935112	T	G	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.911344677288588	5.729459130994061	GTTGTAAAA
chr7	39331907	39331908	chr7:39331908:C:A	rs188643003	C	A	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr7	40150956	40150957	chr7:40150957:C:T	rs192162734	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr7	40701165	40701166	chr7:40701166:C:T	rs148293224	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	40831171	40831172	chr7:40831172:C:T	rs10247275	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr7	41559731	41559732	chr7:41559732:T:A	rs73323904	T	A	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr7	41604685	41604686	chr7:41604686:T:A	rs1986101	T	A	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr7	42460756	42460757	chr7:42460757:T:G	chr7:42460757:T:G	T	G	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr7	42493086	42493087	chr7:42493087:G:A	rs28433002	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	3.5987518915749583	CTCATAAAA
chr7	42880585	42880586	chr7:42880586:T:G	rs61016431	T	G	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr7	43497554	43497555	chr7:43497555:A:G	rs17172215	A	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr7	43568228	43568229	chr7:43568229:A:C	rs12538259	A	C	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr7	43569367	43569368	chr7:43569368:T:C	rs1025538	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr7	43699131	43699132	chr7:43699132:A:C	rs3807518	A	C	A	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr7	45035883	45035884	chr7:45035884:C:G	rs1294969	C	G	C	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr7	45035916	45035917	chr7:45035917:A:G	rs10237248	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr7	45220669	45220670	chr7:45220670:T:G	rs75570840	T	G	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	5.866030860759529	CTCATAAAA
chr7	46164895	46164896	chr7:46164896:G:A	rs17172637	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	6.703896382228609	CTCGTAAAT
chr7	46389509	46389510	chr7:46389510:A:G	rs34175548	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr7	46391525	46391526	chr7:46391526:A:G	rs12538557	A	G	G	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr7	47317262	47317263	chr7:47317263:C:T	rs12702335	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr7	47326092	47326093	chr7:47326093:C:G	rs1464920	C	G	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr7	47372376	47372377	chr7:47372377:T:G	rs73326536	T	G	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr7	47578792	47578793	chr7:47578793:C:T	rs147218353	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr7	47826837	47826838	chr7:47826838:A:G	rs2177164	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	6.813774389185489	CTCATAAAA
chr7	47940612	47940613	chr7:47940613:G:C	rs138173041	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.994948769610968	GTCATAAAA
chr7	49264857	49264858	chr7:49264858:C:T	rs17093278	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr7	50215888	50215889	chr7:50215889:C:T	rs78095904	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr7	50791963	50791964	chr7:50791964:A:G	rs1216508931	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr7	51275407	51275408	chr7:51275408:C:T	rs182619808	C	T	c	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr7	51476358	51476359	chr7:51476359:C:T	rs17734557	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	3.5987518915749583	CTCATAAAA
chr7	53142465	53142466	chr7:53142466:T:G	rs10275751	T	G	t	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr7	53174670	53174671	chr7:53174671:T:C	rs12533662	T	C	t	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr7	53661989	53661990	chr7:53661990:C:T	rs11763544	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr7	54080944	54080945	chr7:54080945:C:T	rs78398662	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.176266619256224	6.291125849088757	GGCGTAAAA
chr7	54471176	54471177	chr7:54471177:A:G	rs141499086	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr7	54474025	54474026	chr7:54474026:C:T	rs7802774	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr7	54573723	54573724	chr7:54573724:C:G	rs639267	C	G	G	Hoxd9.mouse_homeodomain_3	2	1	+	8.420043757940196	1.8598762650360374	GTCATAAAA
chr7	54643720	54643721	chr7:54643721:T:C	rs535535	T	C	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr7	55534156	55534157	chr7:55534157:G:A	rs7784224	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr7	56961830	56961831	chr7:56961831:T:A	rs62462390	T	A	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr7	60299656	60299657	chr7:60299657:T:C	rs1170269263	T	C	.	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr7	60956278	60956279	chr7:60956279:G:A	rs1210154163	G	A	-	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr7	62377223	62377224	chr7:62377224:T:C	rs1457035238	T	C	.	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr7	62859203	62859204	chr7:62859204:C:A	rs112994222	C	A	.	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr7	64689549	64689550	chr7:64689550:C:T	rs3750029	C	T	c	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr7	64990566	64990567	chr7:64990567:G:C	rs114265713	G	C	.	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr7	64997439	64997440	chr7:64997440:T:A	rs62456481	T	A	.	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr7	65973565	65973566	chr7:65973566:A:G	rs781141	A	G	.	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr7	66123232	66123233	chr7:66123233:T:C	rs4441996	T	C	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr7	66550780	66550781	chr7:66550781:C:T	rs801210	C	T	N	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr7	66836123	66836124	chr7:66836124:C:T	rs4273746	C	T	.	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr7	66995023	66995024	chr7:66995024:C:T	rs7778881	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr7	67185193	67185194	chr7:67185194:A:C	rs2421404	A	C	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr7	67307819	67307820	chr7:67307820:G:C	rs117513367	G	C	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr7	67640967	67640968	chr7:67640968:C:A	rs144785530	C	A	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr7	68159498	68159499	chr7:68159499:A:C	rs758682	A	C	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr7	68224537	68224538	chr7:68224538:C:A	rs111577856	C	A	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	68224539	68224540	chr7:68224540:C:T	rs34998273	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr7	68231985	68231986	chr7:68231986:G:C	rs11976217	G	C	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr7	68247475	68247476	chr7:68247476:C:T	rs114980584	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr7	68247517	68247518	chr7:68247518:C:A	rs114180768	C	A	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr7	68807745	68807746	chr7:68807746:C:G	rs113931193	C	G	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr7	69191126	69191127	chr7:69191127:T:C	rs114294679	T	C	t	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr7	69425334	69425335	chr7:69425335:T:G	rs10085629	T	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr7	71129305	71129306	chr7:71129306:T:C	rs4527772	T	C	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr7	71355833	71355834	chr7:71355834:A:G	rs7778324	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr7	71457796	71457797	chr7:71457797:C:G	rs61080489	C	G	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr7	71536058	71536059	chr7:71536059:C:T	rs62459931	C	T	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr7	72110871	72110872	chr7:72110872:C:T	rs73124391	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr7	72682580	72682581	chr7:72682581:A:G	rs2960946	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr7	73767110	73767111	chr7:73767111:G:A	rs73702570	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	6.268873658112532	CTCGTAAAC
chr7	75531991	75531992	chr7:75531992:T:A	rs809439	T	A	.	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr7	75701103	75701104	chr7:75701104:A:G	rs6467388	A	G	a	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr7	75772232	75772233	chr7:75772233:C:T	rs11465332	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr7	76193981	76193982	chr7:76193982:T:C	rs76822460	T	C	.	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr7	77193313	77193314	chr7:77193314:T:C	rs79537883	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr7	77593947	77593948	chr7:77593948:T:C	rs4729548	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr7	77685500	77685501	chr7:77685501:T:G	rs12113119	T	G	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.124010147682185	1.5084671872383608	GCCGTAAAA
chr7	78073762	78073763	chr7:78073763:T:A	rs1859459	T	A	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr7	78073793	78073794	chr7:78073794:A:G	rs3779316	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr7	78164746	78164747	chr7:78164747:C:T	rs1404395	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr7	78255552	78255553	chr7:78255553:A:C	rs798318	A	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr7	78435526	78435527	chr7:78435527:C:A	rs6944478	C	A	A	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	5.195200222700982	GTTGTAAAA
chr7	78539999	78540000	chr7:78540000:G:C	rs35555117	G	C	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr7	78692295	78692296	chr7:78692296:A:G	rs7785088	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr7	79638411	79638412	chr7:79638412:G:A	rs6954862	G	A	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr7	80003271	80003272	chr7:80003272:G:T	rs17802112	G	T	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr7	80650143	80650144	chr7:80650144:A:C	rs3211827	A	C	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr7	80677033	80677034	chr7:80677034:C:G	rs1049673	C	G	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr7	80763899	80763900	chr7:80763900:T:C	rs3823478	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr7	80997866	80997867	chr7:80997867:C:G	rs9969152	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	4.756062684237877	GTTGTAAAA
chr7	81781599	81781600	chr7:81781600:G:A	rs975359	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr7	81802462	81802463	chr7:81802463:C:T	rs9332389	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr7	83359995	83359996	chr7:83359996:C:T	rs17212207	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr7	83390758	83390759	chr7:83390759:G:A	rs62458479	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr7	83878843	83878844	chr7:83878844:A:C	rs115788371	A	C	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	6.149902535056951	GTCATAAAA
chr7	83878848	83878849	chr7:83878849:A:G	rs74991696	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	6.916975105184722	GTCATAAAA
chr7	84003930	84003931	chr7:84003931:A:C	rs6965585	A	C	A	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr7	85554426	85554427	chr7:85554427:A:G	rs561263264	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr7	85554451	85554452	chr7:85554452:C:T	rs147004276	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr7	87056638	87056639	chr7:87056639:A:C	rs78161728	A	C	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	87144352	87144353	chr7:87144353:T:C	rs9986723	T	C	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.420043757940196	1.5516011963436003	GTCATAAAA
chr7	87574962	87574963	chr7:87574963:C:T	rs1202179	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr7	88432197	88432198	chr7:88432198:C:T	rs7792197	C	T	c	Hoxd9.mouse_homeodomain_3	2	1	+	8.124010147682185	6.73017029686311	GCCGTAAAA
chr7	92949927	92949928	chr7:92949928:C:T	rs10224528	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr7	93465967	93465968	chr7:93465968:A:G	rs57668260	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr7	93914610	93914611	chr7:93914611:C:G	rs117289158	C	G	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	95532159	95532160	chr7:95532160:C:T	rs78004566	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr7	96198238	96198239	chr7:96198239:A:C	rs6976802	A	C	A	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr7	96482028	96482029	chr7:96482029:A:G	rs9785005	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr7	96595865	96595866	chr7:96595866:G:A	rs17495203	G	A	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr7	96837899	96837900	chr7:96837900:A:C	rs73710724	A	C	A	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr7	97022672	97022673	chr7:97022673:G:A	rs9769385	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr7	98013738	98013739	chr7:98013739:G:A	rs757152959	G	A	.	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr7	98163507	98163508	chr7:98163508:G:A	rs17435847	G	A	g	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr7	98476915	98476916	chr7:98476916:C:T	rs17147641	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr7	98629423	98629424	chr7:98629424:G:A	rs705315	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr7	98682224	98682225	chr7:98682225:G:A	rs73147418	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.014132140725302	6.620292289906229	GTCGTAAAT
chr7	98682236	98682237	chr7:98682237:T:C	rs78267235	T	C	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr7	98868986	98868987	chr7:98868987:C:T	rs183322726	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	99024248	99024249	chr7:99024249:C:T	rs6960083	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr7	99407882	99407883	chr7:99407883:C:T	rs10279308	C	T	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr7	99407925	99407926	chr7:99407926:C:A	rs1223005394	C	A	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr7	99631811	99631812	chr7:99631812:T:C	rs3735453	T	C	t	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr7	101134583	101134584	chr7:101134584:G:T	chr7:101134584:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr7	101144290	101144291	chr7:101144291:C:T	rs114396650	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr7	101218588	101218589	chr7:101218589:G:T	rs2072168	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	7.589037152396075	4.872892697808469	CTCGTAAAT
chr7	101483065	101483066	chr7:101483066:C:T	rs34682212	C	T	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr7	101651691	101651692	chr7:101651692:T:C	rs202112968	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr7	101730169	101730170	chr7:101730170:A:G	rs6948235	A	G	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr7	102127224	102127225	chr7:102127225:G:A	rs201519	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr7	102431981	102431982	chr7:102431982:G:T	rs111726257	G	T	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	6.163945085190828	CTCGTAAAA
chr7	104679345	104679346	chr7:104679346:T:A	rs10279339	T	A	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	104884018	104884019	chr7:104884019:T:C	rs17173	T	C	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr7	104884051	104884052	chr7:104884052:C:T	rs889797189	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr7	104987257	104987258	chr7:104987258:C:T	rs75351153	C	T	c	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr7	105578785	105578786	chr7:105578786:T:G	rs1721500	T	G	T	Hoxd9.mouse_homeodomain_3	7	1	-	7.994948769610968	4.829041988575794	CTCATAAAA
chr7	105780998	105780999	chr7:105780999:C:T	rs4730105	C	T	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr7	105989993	105989994	chr7:105989994:C:A	rs3847076	C	A	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr7	106132882	106132883	chr7:106132883:G:A	rs9632730	G	A	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr7	106343494	106343495	chr7:106343495:T:C	rs2519682	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.420043757940196	1.8045007974963716	GTCATAAAA
chr7	106367110	106367111	chr7:106367111:C:T	rs719917	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr7	107803307	107803308	chr7:107803308:C:T	rs6466184	C	T	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr7	107860343	107860344	chr7:107860344:A:C	rs902236034	A	C	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr7	107920236	107920237	chr7:107920237:T:C	rs2158835	T	C	C	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	6.73017029686311	GTTGTAAAA
chr7	108333126	108333127	chr7:108333127:T:A	rs12540040	T	A	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr7	108613994	108613995	chr7:108613995:A:T	rs73412426	A	T	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr7	110489370	110489371	chr7:110489371:G:A	rs113072162	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr7	110775226	110775227	chr7:110775227:G:A	rs55990051	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr7	112197574	112197575	chr7:112197575:T:C	rs17159353	T	C	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr7	112455198	112455199	chr7:112455199:G:A	rs117210448	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr7	114021319	114021320	chr7:114021320:T:C	rs10953751	T	C	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr7	114229483	114229484	chr7:114229484:G:T	rs556732779	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr7	114415428	114415429	chr7:114415429:A:C	rs527968566	A	C	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr7	115334272	115334273	chr7:115334273:C:G	rs35025589	C	G	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr7	115480893	115480894	chr7:115480894:C:T	rs1949990	C	T	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr7	116176317	116176318	chr7:116176318:C:G	rs6949241	C	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr7	116176324	116176325	chr7:116176325:G:A	rs76765383	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr7	116339666	116339667	chr7:116339667:T:C	rs189638996	T	C	T	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr7	116687375	116687376	chr7:116687376:C:G	rs39748	C	G	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr7	118232573	118232574	chr7:118232574:T:G	rs10487392	T	G	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr7	119017139	119017140	chr7:119017140:T:C	rs78740498	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr7	119944354	119944355	chr7:119944355:G:A	rs13233786	G	A	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr7	121073548	121073549	chr7:121073549:G:A	rs56360391	G	A	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr7	121314217	121314218	chr7:121314218:T:C	rs983926	T	C	C	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr7	122225949	122225950	chr7:122225950:T:A	rs284355	T	A	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr7	122726441	122726442	chr7:122726442:T:G	rs6948815	T	G	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr7	123353261	123353262	chr7:123353262:A:C	rs28532286	A	C	A	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr7	123751586	123751587	chr7:123751587:C:T	rs3757505	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr7	125004635	125004636	chr7:125004636:G:T	rs1531717	G	T	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr7	125253739	125253740	chr7:125253740:T:C	rs116296115	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr7	127586963	127586964	chr7:127586964:G:T	rs13244426	G	T	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr7	127596283	127596284	chr7:127596284:C:G	rs3735640	C	G	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr7	127651211	127651212	chr7:127651212:A:G	rs894062	A	G	A	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr7	128409518	128409519	chr7:128409519:C:T	rs2288551	C	T	C	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr7	128425795	128425796	chr7:128425796:G:A	rs78297990	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr7	128879091	128879092	chr7:128879092:G:T	rs183357398	G	T	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr7	128879107	128879108	chr7:128879108:C:T	rs7780972	C	T	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr7	128931613	128931614	chr7:128931614:C:T	rs113935860	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr7	129328829	129328830	chr7:129328830:T:G	rs13226919	T	G	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	129691062	129691063	chr7:129691063:C:T	rs4731615	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr7	129896862	129896863	chr7:129896863:T:A	rs2727479	T	A	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	130322062	130322063	chr7:130322063:A:G	rs114446140	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr7	130384168	130384169	chr7:130384169:A:G	rs741486	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr7	130942188	130942189	chr7:130942189:C:T	rs12533527	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr7	131210889	131210890	chr7:131210890:C:T	rs62471969	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	8.232433356227913	6.838593505408839	GTCGTTAAA
chr7	131843984	131843985	chr7:131843985:A:G	rs7811980	A	G	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.911344677288588	9.305184528107661	GTTGTAAAA
chr7	132030556	132030557	chr7:132030557:A:C	rs11978376	A	C	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr7	132660692	132660693	chr7:132660693:G:A	rs62465247	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr7	132757108	132757109	chr7:132757109:C:T	rs6976558	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr7	133014124	133014125	chr7:133014125:C:T	rs2160896	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	133790078	133790079	chr7:133790079:T:C	rs1286613982	T	C	T	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr7	134300125	134300126	chr7:134300126:G:A	rs34664116	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr7	134356330	134356331	chr7:134356331:C:T	rs4728320	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr7	134521288	134521289	chr7:134521289:G:A	rs10263433	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.802115875352188	6.916975105184722	GTCGTAAAG
chr7	134594178	134594179	chr7:134594179:G:A	rs773969077	G	A	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr7	134594215	134594216	chr7:134594216:G:C	rs12673319	G	C	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr7	134641519	134641520	chr7:134641520:G:T	rs1549325	G	T	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr7	135272589	135272590	chr7:135272590:T:C	rs292659	T	C	C	Hoxd9.mouse_homeodomain_3	4	1	+	8.420043757940196	5.2574698930292145	GTCATAAAA
chr7	135842993	135842994	chr7:135842994:C:A	rs576158470	C	A	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr7	136180437	136180438	chr7:136180438:G:A	rs17243303	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr7	136292695	136292696	chr7:136292696:G:A	rs2555050	G	A	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr7	137327813	137327814	chr7:137327814:A:G	rs76745761	A	G	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr7	137443748	137443749	chr7:137443749:A:T	rs2288145	A	T	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr7	137443782	137443783	chr7:137443783:T:C	rs2288146	T	C	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr7	137475699	137475700	chr7:137475700:A:G	rs36076622	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr7	137970426	137970427	chr7:137970427:C:T	rs548450527	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr7	138245617	138245618	chr7:138245618:G:T	rs2431046	G	T	T	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	3.5987518915749583	GTCATAAAA
chr7	138934912	138934913	chr7:138934913:C:T	rs148359118	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr7	138934913	138934914	chr7:138934914:A:C	rs17160622	A	C	A	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr7	139075037	139075038	chr7:139075038:T:C	rs10257384	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr7	139075051	139075052	chr7:139075052:G:T	rs7783725	G	T	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr7	140010347	140010348	chr7:140010348:C:T	rs3823715	C	T	T	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	3.5987518915749583	CTCATAAAA
chr7	140416786	140416787	chr7:140416787:G:A	rs59583317	G	A	G	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr7	140624021	140624022	chr7:140624022:A:G	rs269232	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr7	141354174	141354175	chr7:141354175:C:T	rs10488015	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.37702088702296	2.980824008986951	CTCGTAAAG
chr7	142041694	142041695	chr7:142041695:T:C	rs192234647	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr7	142111632	142111633	chr7:142111633:C:T	rs10952516	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr7	142123113	142123114	chr7:142123114:G:C	rs114377843	G	C	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr7	142385524	142385525	chr7:142385525:T:C	rs187962118	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr7	142385547	142385548	chr7:142385548:T:C	chr7:142385548:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr7	142438345	142438346	chr7:142438346:A:T	rs141088258	A	T	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr7	142557554	142557555	chr7:142557555:T:C	rs2855150	T	C	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr7	142668547	142668548	chr7:142668548:A:G	rs28496944	A	G	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	8.880089539778433	CTCATAAAA
chr7	142668567	142668568	chr7:142668568:G:T	rs113756226	G	T	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr7	142750912	142750913	chr7:142750913:A:T	rs745314232	A	T	A	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr7	142750916	142750917	chr7:142750917:C:T	rs376959792	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr7	142750953	142750954	chr7:142750954:T:C	rs371629838	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr7	142761873	142761874	chr7:142761874:T:C	rs1236114973	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr7	142838384	142838385	chr7:142838385:C:G	rs10261171	C	G	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr7	143468223	143468224	chr7:143468224:A:G	rs2966717	A	G	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.911344677288588	9.305184528107661	GTTGTAAAA
chr7	147834438	147834439	chr7:147834439:C:A	rs12539579	C	A	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr7	148057180	148057181	chr7:148057181:G:A	rs10271435	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.087808497260832	7.4756728188075625	GTCGTAAAC
chr7	148238606	148238607	chr7:148238607:G:A	rs6464862	G	A	A	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr7	148396434	148396435	chr7:148396435:A:C	rs73747623	A	C	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr7	148596263	148596264	chr7:148596264:A:G	rs2888563	A	G	G	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr7	148987142	148987143	chr7:148987143:T:C	rs576813482	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr7	150367933	150367934	chr7:150367934:A:T	rs6946153	A	T	a	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr7	150400072	150400073	chr7:150400073:C:T	rs75576157	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr7	150420978	150420979	chr7:150420979:A:G	rs11971126	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr7	150421440	150421441	chr7:150421441:T:G	rs79859571	T	G	T	Hoxd9.mouse_homeodomain_3	1	1	+	8.420043757940196	6.291125849088757	GTCATAAAA
chr7	150439390	150439391	chr7:150439391:G:C	rs7777466	G	C	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr7	150586490	150586491	chr7:150586491:T:C	rs73727338	T	C	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr7	150803431	150803432	chr7:150803432:C:T	rs741066	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr7	150803438	150803439	chr7:150803439:C:T	rs117401275	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr7	150831149	150831150	chr7:150831150:G:A	rs4725952	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr7	150867198	150867199	chr7:150867199:T:C	rs10236839	T	C	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	151097638	151097639	chr7:151097639:G:C	rs6970547	G	C	c	Hoxd9.mouse_homeodomain_3	2	1	-	7.698915159352956	1.1387476664487979	CCCGTAAAA
chr7	151423832	151423833	chr7:151423833:A:T	rs55683955	A	T	A	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr7	151423861	151423862	chr7:151423862:T:A	rs13232179	T	A	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr7	152136740	152136741	chr7:152136741:A:G	rs142171905	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr7	152587414	152587415	chr7:152587415:C:T	rs57395410	C	T	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	152587424	152587425	chr7:152587425:G:A	rs62494008	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.420043757940196	7.026203907121121	GTCATAAAA
chr7	153022146	153022147	chr7:153022147:T:C	rs76531588	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr7	153408226	153408227	chr7:153408227:T:A	rs4725497	T	A	T	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr7	153470261	153470262	chr7:153470262:C:T	rs7785341	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr7	153628930	153628931	chr7:153628931:A:T	rs7801102	A	T	.	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr7	154383318	154383319	chr7:154383319:A:G	rs7808582	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	1.1265062080143724	CTCATAAAA
chr7	155377310	155377311	chr7:155377311:C:T	rs1421319	C	T	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr7	155476532	155476533	chr7:155476533:G:A	rs73163355	G	A	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr7	155667604	155667605	chr7:155667605:C:T	rs4716892	C	T	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr7	155886534	155886535	chr7:155886535:C:T	rs74434236	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr7	156094351	156094352	chr7:156094352:A:C	rs17837617	A	C	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	5.724807546727723	CTCATAAAA
chr7	156506877	156506878	chr7:156506878:A:G	rs76021663	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr7	156618865	156618866	chr7:156618866:A:G	rs57161458	A	G	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr7	156664163	156664164	chr7:156664164:A:G	rs56756708	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr7	156893825	156893826	chr7:156893826:T:C	rs142935822	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr7	156893836	156893837	chr7:156893837:A:G	rs113704667	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	7.238869377514717	GTCATAAAA
chr7	156990828	156990829	chr7:156990829:T:G	rs6959718	T	G	T	Hoxd9.mouse_homeodomain_3	8	1	-	8.420043757940196	7.202667727093368	GTCATAAAA
chr7	157176997	157176998	chr7:157176998:C:A	rs73743216	C	A	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr7	157498374	157498375	chr7:157498375:C:T	rs77316409	C	T	c	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr7	158031412	158031413	chr7:158031413:C:T	rs60273347	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr7	158814863	158814864	chr7:158814864:G:A	rs1189220	G	A	A	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr7	158818392	158818393	chr7:158818393:C:T	rs946245	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.124010147682185	7.238869377514717	GCCGTAAAA
chr7	158818410	158818411	chr7:158818411:G:A	rs113854923	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr7	159126078	159126079	chr7:159126079:T:C	rs67373805	T	C	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr8	546213	546214	chr8:546214:A:G	rs139451737	A	G	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr8	625934	625935	chr8:625935:C:G	rs79693921	C	G	C	Hoxd9.mouse_homeodomain_3	1	1	+	8.124010147682185	7.176266619256224	GCCGTAAAA
chr8	1044200	1044201	chr8:1044201:C:A	rs10086548	C	A	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr8	1260500	1260501	chr8:1260501:T:A	rs11781355	T	A	-	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr8	1741010	1741011	chr8:1741011:A:C	rs11782618	A	C	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr8	2094066	2094067	chr8:2094067:G:A	rs35335787	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr8	2158288	2158289	chr8:2158289:C:T	rs2165285	C	T	c	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr8	2181343	2181344	chr8:2181344:C:T	rs2581568	C	T	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr8	2227774	2227775	chr8:2227775:G:A	rs13265429	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr8	2658261	2658262	chr8:2658262:T:C	rs141864288	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr8	2874521	2874522	chr8:2874522:C:T	rs13258860	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr8	2885544	2885545	chr8:2885545:G:A	rs7003127	G	A	g	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	3134444	3134445	chr8:3134445:G:A	rs115610642	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr8	3661216	3661217	chr8:3661217:C:G	rs2624084	C	G	G	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	4.433755159345364	CTCGTAAAT
chr8	3856217	3856218	chr8:3856218:A:C	rs7010311	A	C	g	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	4.829041988575794	CTCATAAAA
chr8	4338657	4338658	chr8:4338658:C:T	rs6558864	C	T	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	5748366	5748367	chr8:5748367:G:A	rs1635637	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	6.491880116855494	CTCGTAAAG
chr8	6324585	6324586	chr8:6324586:C:T	rs12679827	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr8	6324590	6324591	chr8:6324591:G:C	rs7838045	G	C	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr8	6407581	6407582	chr8:6407582:G:C	rs2440450	G	C	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr8	6873875	6873876	chr8:6873876:T:A	rs2977776	T	A	T	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr8	7146446	7146447	chr8:7146447:A:C	rs28404695	A	C	.	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr8	7547653	7547654	chr8:7547654:A:C	rs113350651	A	C	.	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr8	8222601	8222602	chr8:8222602:A:G	rs4573285	A	G	.	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr8	8389502	8389503	chr8:8389503:C:G	rs59339218	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr8	8482965	8482966	chr8:8482966:A:T	rs2979196	A	T	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr8	8482966	8482967	chr8:8482967:T:C	rs2921028	T	C	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	8539226	8539227	chr8:8539227:G:C	rs4367542	G	C	C	Hoxd9.mouse_homeodomain_3	2	1	-	8.69304884965439	2.1328813567502314	ATCGTAAAA
chr8	8669776	8669777	chr8:8669777:C:T	rs192026757	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr8	8698767	8698768	chr8:8698768:T:C	rs28663303	T	C	t	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	9139249	9139250	chr8:9139250:C:G	rs7459730	C	G	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr8	9250799	9250800	chr8:9250800:A:G	rs2409547	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	-	8.014132140725302	8.087808497260832	GTCGTAAAT
chr8	9381553	9381554	chr8:9381554:C:T	rs61236019	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr8	10317234	10317235	chr8:10317235:A:G	rs896534586	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.37702088702296	0.7614779265791366	CTCGTAAAG
chr8	10372533	10372534	chr8:10372534:T:A	rs7842443	T	A	A	Hoxd9.mouse_homeodomain_3	6	1	-	7.911344677288588	5.095634843410439	GTTGTAAAA
chr8	10556629	10556630	chr8:10556630:T:C	rs60431375	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	6.73017029686311	GTTGTAAAA
chr8	10644834	10644835	chr8:10644835:G:C	rs4841402	G	C	G	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr8	10653478	10653479	chr8:10653479:T:C	rs73198802	T	C	C	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr8	11286804	11286805	chr8:11286805:T:C	rs10091637	T	C	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr8	11452023	11452024	chr8:11452024:A:G	rs36043848	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr8	11452056	11452057	chr8:11452057:G:C	rs28583691	G	C	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr8	11514037	11514038	chr8:11514038:C:T	rs12674768	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr8	11533117	11533118	chr8:11533118:A:T	rs58373594	A	T	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr8	11564915	11564916	chr8:11564916:A:T	rs62490891	A	T	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr8	11681368	11681369	chr8:11681369:C:G	rs60668163	C	G	C	Hoxd9.mouse_homeodomain_3	0	1	+	7.994948769610968	8.420043757940196	CTCATAAAA
chr8	11723522	11723523	chr8:11723523:C:T	rs11784821	C	T	C	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr8	11843688	11843689	chr8:11843689:G:A	rs12898	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr8	11979112	11979113	chr8:11979113:C:T	rs7823808	C	T	T	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr8	12029212	12029213	chr8:12029213:C:T	rs7005747	C	T	.	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr8	12857280	12857281	chr8:12857281:A:G	rs17770189	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr8	12857310	12857311	chr8:12857311:A:C	rs17832168	A	C	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	13081041	13081042	chr8:13081042:C:T	rs59290063	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr8	13158849	13158850	chr8:13158850:C:A	rs67404687	C	A	A	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	3.5987518915749583	GTCATAAAA
chr8	13158869	13158870	chr8:13158870:G:A	rs67035513	G	A	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr8	13318897	13318898	chr8:13318898:A:G	rs1671400	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr8	13459890	13459891	chr8:13459891:G:T	chr8:13459891:G:T	G	T	G	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr8	13927434	13927435	chr8:13927435:A:G	rs2682635	A	G	A	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr8	14277395	14277396	chr8:14277396:T:C	rs59418389	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr8	14517044	14517045	chr8:14517045:T:A	rs13273898	T	A	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr8	14667470	14667471	chr8:14667471:C:T	rs11990504	C	T	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr8	14860213	14860214	chr8:14860214:T:G	rs1350646677	T	G	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr8	15149675	15149676	chr8:15149676:T:G	rs268439	T	G	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr8	16264807	16264808	chr8:16264808:C:T	rs76563025	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr8	16296798	16296799	chr8:16296799:G:C	rs4831814	G	C	-	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr8	16547703	16547704	chr8:16547704:A:T	rs55979812	A	T	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr8	16754939	16754940	chr8:16754940:T:C	rs668526	T	C	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr8	16755989	16755990	chr8:16755990:C:G	rs546714054	C	G	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr8	16759906	16759907	chr8:16759907:C:A	rs13252764	C	A	a	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr8	16826368	16826369	chr8:16826369:A:G	rs13261478	A	G	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr8	16981431	16981432	chr8:16981432:T:C	rs79038165	T	C	T	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr8	17561541	17561542	chr8:17561542:C:A	rs2705061	C	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr8	17642590	17642591	chr8:17642591:C:G	rs139202189	C	G	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr8	17642609	17642610	chr8:17642610:C:T	rs17633132	C	T	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr8	17700138	17700139	chr8:17700139:C:G	rs371250	C	G	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr8	17700159	17700160	chr8:17700160:G:C	rs17125165	G	C	G	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr8	17804031	17804032	chr8:17804032:G:T	rs371308	G	T	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr8	17836734	17836735	chr8:17836735:C:G	rs17125625	C	G	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr8	18003353	18003354	chr8:18003354:T:C	rs12056629	T	C	c	Hoxd9.mouse_homeodomain_3	4	1	+	7.994948769610968	4.832374904699987	CTCATAAAA
chr8	18477912	18477913	chr8:18477913:T:C	rs4921928	T	C	C	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr8	18675478	18675479	chr8:18675479:G:T	rs78687091	G	T	G	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr8	18943023	18943024	chr8:18943024:T:A	rs12156201	T	A	A	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	18943028	18943029	chr8:18943029:C:T	rs12155896	C	T	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr8	19003707	19003708	chr8:19003708:C:T	rs76113926	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	19003732	19003733	chr8:19003733:C:T	chr8:19003733:C:T	C	T	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr8	19079522	19079523	chr8:19079523:A:G	rs17469836	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr8	19097316	19097317	chr8:19097317:C:G	rs73668622	C	G	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr8	19215025	19215026	chr8:19215026:G:A	rs12544391	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr8	19215033	19215034	chr8:19215034:A:G	rs1448092640	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	8.124010147682185	1.5084671872383608	GCCGTAAAA
chr8	19215045	19215046	chr8:19215046:T:C	rs17127984	T	C	T	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	19216038	19216039	chr8:19216039:G:A	rs1193320	G	A	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr8	19437347	19437348	chr8:19437348:G:A	rs7835945	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr8	19473363	19473364	chr8:19473364:C:A	rs147606276	C	A	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr8	19501900	19501901	chr8:19501901:T:C	rs887939857	T	C	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr8	19612899	19612900	chr8:19612900:G:A	rs78608664	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.698915159352956	6.813774389185489	CCCGTAAAA
chr8	19689184	19689185	chr8:19689185:G:T	rs1979680	G	T	T	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr8	20111417	20111418	chr8:20111418:T:C	rs16842	T	C	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr8	20430458	20430459	chr8:20430459:G:A	rs7845281	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr8	20561885	20561886	chr8:20561886:C:T	rs7824498	C	T	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr8	20968361	20968362	chr8:20968362:A:G	rs568433	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr8	21418455	21418456	chr8:21418456:G:C	rs13249107	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	8.420043757940196	CTCATAAAA
chr8	22109795	22109796	chr8:22109796:A:C	rs7817171	A	C	c	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr8	22109837	22109838	chr8:22109838:G:A	rs7831322	G	A	g	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr8	23173226	23173227	chr8:23173227:A:G	rs13272978	A	G	g	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr8	23225457	23225458	chr8:23225458:G:T	rs13278062	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr8	23833004	23833005	chr8:23833005:G:C	rs4872195	G	C	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	23952680	23952681	chr8:23952681:A:T	rs79938869	A	T	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	24086837	24086838	chr8:24086838:G:T	rs79327983	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr8	24243983	24243984	chr8:24243984:G:A	rs73217046	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	24415196	24415197	chr8:24415197:C:G	chr8:24415197:C:G	C	G	C	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr8	24618471	24618472	chr8:24618472:T:C	rs117668646	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr8	24755981	24755982	chr8:24755982:G:T	rs2607609	G	T	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr8	24762659	24762660	chr8:24762660:C:A	rs68112341	C	A	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	25252528	25252529	chr8:25252529:G:T	rs73216241	G	T	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr8	25910380	25910381	chr8:25910381:G:A	rs17808918	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.014132140725302	6.620292289906229	GTCGTAAAT
chr8	26038893	26038894	chr8:26038894:C:T	rs17054793	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr8	26045325	26045326	chr8:26045326:C:G	rs188132169	C	G	C	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr8	26045331	26045332	chr8:26045332:C:T	rs553629409	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	26078001	26078002	chr8:26078002:T:G	rs77114109	T	G	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr8	26597394	26597395	chr8:26597395:G:A	rs17088245	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr8	26662582	26662583	chr8:26662583:C:T	rs533721853	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr8	26743977	26743978	chr8:26743978:A:G	rs10096141	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr8	26900619	26900620	chr8:26900620:T:C	rs10092764	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr8	27379688	27379689	chr8:27379689:A:G	rs1429938	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr8	27379689	27379690	chr8:27379690:T:C	rs1429937	T	C	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr8	27507912	27507913	chr8:27507913:C:A	rs7839733	C	A	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr8	27927775	27927776	chr8:27927776:C:T	rs143338146	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr8	28164251	28164252	chr8:28164252:G:T	rs1982441	G	T	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr8	28369405	28369406	chr8:28369406:C:T	rs760221347	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr8	28594021	28594022	chr8:28594022:A:C	rs12056676	A	C	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr8	29637368	29637369	chr8:29637369:A:G	rs10109022	A	G	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr8	30123199	30123200	chr8:30123200:G:A	rs1511167	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr8	30446316	30446317	chr8:30446317:A:C	rs4416792	A	C	A	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	31058157	31058158	chr8:31058158:A:C	rs11574175	A	C	A	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr8	31106694	31106695	chr8:31106695:C:T	rs13251813	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr8	31644771	31644772	chr8:31644772:A:G	rs13256889	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr8	31906294	31906295	chr8:31906295:G:A	rs13255747	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr8	32430270	32430271	chr8:32430271:T:C	rs115784151	T	C	T	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr8	32430281	32430282	chr8:32430282:A:G	rs11774782	A	G	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr8	32661239	32661240	chr8:32661240:G:A	rs2466045	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr8	32722167	32722168	chr8:32722168:G:C	rs17669659	G	C	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.37702088702296	4.221738893972249	CTCGTAAAG
chr8	33106216	33106217	chr8:33106217:A:C	rs147595062	A	C	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr8	33202034	33202035	chr8:33202035:C:T	rs6468144	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr8	33513220	33513221	chr8:33513221:A:C	rs80105855	A	C	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	34462575	34462576	chr8:34462576:T:C	rs7840167	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr8	36588890	36588891	chr8:36588891:G:A	rs17303597	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr8	37403533	37403534	chr8:37403534:A:C	rs117391159	A	C	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr8	37476070	37476071	chr8:37476071:G:A	rs187279112	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr8	38651468	38651469	chr8:38651469:T:A	rs7824271	T	A	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr8	38651486	38651487	chr8:38651487:C:T	rs10958773	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr8	38766499	38766500	chr8:38766500:A:G	rs58215145	A	G	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr8	40715670	40715671	chr8:40715671:G:A	rs6988966	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	41301464	41301465	chr8:41301465:A:T	rs10090158	A	T	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr8	42268090	42268091	chr8:42268091:G:C	rs28618353	G	C	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr8	42618832	42618833	chr8:42618833:C:T	rs543296365	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	42618861	42618862	chr8:42618862:C:A	rs16891441	C	A	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	43517154	43517155	chr8:43517155:C:T	rs78093441	C	T	N	Hoxd9.mouse_homeodomain_3	3	1	-	9.305184528107661	8.420043757940196	GTCGTAAAA
chr8	48281944	48281945	chr8:48281945:A:G	rs56129629	A	G	A	Hoxd9.mouse_homeodomain_3	4	1	-	7.911344677288588	4.748770812377607	GTTGTAAAA
chr8	49307198	49307199	chr8:49307199:A:G	rs12708031	A	G	g	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	51046848	51046849	chr8:51046849:T:C	rs7017034	T	C	T	Hoxd9.mouse_homeodomain_3	5	1	-	7.994948769610968	1.3794058091671437	CTCATAAAA
chr8	52251564	52251565	chr8:52251565:C:T	rs16917564	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr8	52703594	52703595	chr8:52703595:C:G	rs72633843	C	G	C	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr8	53104557	53104558	chr8:53104558:A:T	rs12678085	A	T	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr8	53692901	53692902	chr8:53692902:G:T	rs185831278	G	T	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr8	56700157	56700158	chr8:56700158:T:C	rs4737445	T	C	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	56821206	56821207	chr8:56821207:A:G	rs6474081	A	G	G	Hoxd9.mouse_homeodomain_3	6	1	+	7.994948769610968	4.016968795292732	CTCATAAAA
chr8	56821207	56821208	chr8:56821208:A:G	rs6474082	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	1.1265062080143724	CTCATAAAA
chr8	57298606	57298607	chr8:57298607:C:T	rs10956999	C	T	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr8	57353238	57353239	chr8:57353239:T:C	rs12679553	T	C	c	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr8	57353257	57353258	chr8:57353258:C:T	rs16922077	C	T	c	Hoxd9.mouse_homeodomain_3	3	1	-	7.176266619256224	6.291125849088757	GGCGTAAAA
chr8	57741782	57741783	chr8:57741783:C:A	rs7014482	C	A	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr8	58378380	58378381	chr8:58378381:T:C	rs1457033	T	C	c	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr8	58378403	58378404	chr8:58378404:G:A	rs10101033	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	7.802115875352188	6.408276024533114	GTCGTAAAG
chr8	59767348	59767349	chr8:59767349:G:A	rs6415585	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr8	59828341	59828342	chr8:59828342:G:A	rs72657888	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr8	59919129	59919130	chr8:59919130:A:G	rs184694274	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr8	60499574	60499575	chr8:60499575:C:G	rs113280819	C	G	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr8	60499587	60499588	chr8:60499588:G:A	rs112089898	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	6.77757273876414	CTCGTAAAC
chr8	60796332	60796333	chr8:60796333:T:C	rs7000957	T	C	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr8	61726624	61726625	chr8:61726625:C:T	rs12678477	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr8	62138971	62138972	chr8:62138972:G:A	rs10110503	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr8	62506354	62506355	chr8:62506355:C:T	rs75394382	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr8	62997874	62997875	chr8:62997875:T:C	rs16930070	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr8	63124387	63124388	chr8:63124388:C:A	rs59213561	C	A	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr8	63171668	63171669	chr8:63171669:C:A	rs1435457	C	A	A	Hoxd9.mouse_homeodomain_3	2	1	+	8.880089539778433	7.118436152938057	CTCGTAAAA
chr8	63298109	63298110	chr8:63298110:C:T	rs112355345	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	8.087808497260832	6.69396864644176	GTCGTAAAC
chr8	63298149	63298150	chr8:63298150:T:C	rs12678487	T	C	T	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr8	65643409	65643410	chr8:65643410:A:C	rs73690891	A	C	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr8	65643443	65643444	chr8:65643444:G:A	rs73690892	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr8	65948801	65948802	chr8:65948802:C:A	rs59658032	C	A	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr8	65948803	65948804	chr8:65948804:G:T	rs143689573	G	T	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr8	66124320	66124321	chr8:66124321:G:A	rs187843188	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.232433356227913	6.838593505408839	GTCGTTAAA
chr8	66124337	66124338	chr8:66124338:C:T	rs7843077	C	T	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr8	66430598	66430599	chr8:66430599:A:G	chr8:66430599:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr8	66533695	66533696	chr8:66533696:G:C	rs568361714	G	C	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr8	67613189	67613190	chr8:67613190:T:C	rs7832751	T	C	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr8	69181278	69181279	chr8:69181279:T:C	rs17704313	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	6.813774389185489	CTCATAAAA
chr8	69725922	69725923	chr8:69725923:A:G	rs2933028	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr8	69725955	69725956	chr8:69725956:A:C	rs2959551	A	C	C	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr8	70534618	70534619	chr8:70534619:T:C	chr8:70534619:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	70577446	70577447	chr8:70577447:C:A	rs368854	C	A	C	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr8	70662606	70662607	chr8:70662607:C:T	rs17760069	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr8	71165719	71165720	chr8:71165720:A:G	rs16937456	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	71283516	71283517	chr8:71283517:A:T	rs60972351	A	T	A	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr8	71301054	71301055	chr8:71301055:T:G	rs10092844	T	G	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.124010147682185	4.958103366647011	GCCGTAAAA
chr8	71380351	71380352	chr8:71380352:C:T	rs4991760	C	T	T	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr8	71737124	71737125	chr8:71737125:G:C	rs28533457	G	C	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr8	73155158	73155159	chr8:73155159:C:T	rs2891343	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.589037152396075	6.703896382228609	CTCGTAAAT
chr8	73166079	73166080	chr8:73166080:C:T	rs12541556	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.662713508931605	6.268873658112532	CTCGTAAAC
chr8	73166098	73166099	chr8:73166099:G:A	rs12541586	G	A	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr8	73388065	73388066	chr8:73388066:C:T	rs73316650	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.698915159352956	6.305075308533882	CCCGTAAAA
chr8	73589455	73589456	chr8:73589456:A:T	rs73328779	A	T	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	73740170	73740171	chr8:73740171:C:T	rs138791824	C	T	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr8	74063024	74063025	chr8:74063025:T:C	rs78378742	T	C	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr8	74178881	74178882	chr8:74178882:G:A	rs138265143	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr8	74822039	74822040	chr8:74822040:C:A	rs111325750	C	A	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr8	74978188	74978189	chr8:74978189:T:G	rs76623109	T	G	T	Hoxd9.mouse_homeodomain_3	7	1	-	8.69304884965439	5.5271420686192165	ATCGTAAAA
chr8	75707499	75707500	chr8:75707500:T:C	rs7844131	T	C	T	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr8	76170924	76170925	chr8:76170925:C:T	rs4087982	C	T	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr8	76358491	76358492	chr8:76358492:G:A	rs16939267	G	A	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr8	76513144	76513145	chr8:76513145:T:C	rs28679308	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	76530212	76530213	chr8:76530213:C:T	rs577418164	C	T	C	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr8	76839798	76839799	chr8:76839799:A:G	rs6986186	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr8	78507637	78507638	chr8:78507638:T:A	rs190992743	T	A	T	Hoxd9.mouse_homeodomain_3	5	1	-	8.087808497260832	7.015057325381084	GTCGTAAAC
chr8	79170153	79170154	chr8:79170154:G:A	rs61640727	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr8	79319627	79319628	chr8:79319628:A:G	rs56180070	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr8	79334386	79334387	chr8:79334387:A:C	rs1460176	A	C	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr8	79334417	79334418	chr8:79334418:G:A	rs76579427	G	A	G	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr8	79343998	79343999	chr8:79343999:T:G	rs76247951	T	G	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr8	79343999	79344000	chr8:79344000:T:A	rs79175843	T	A	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr8	79344010	79344011	chr8:79344011:C:T	rs11785802	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr8	79344030	79344031	chr8:79344031:G:A	rs150669736	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr8	79703500	79703501	chr8:79703501:T:C	rs2017743	T	C	T	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr8	80079987	80079988	chr8:80079988:T:C	rs7016153	T	C	T	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr8	80990381	80990382	chr8:80990382:G:A	rs7009154	G	A	G	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr8	82200502	82200503	chr8:82200503:A:G	rs78585086	A	G	A	Hoxd9.mouse_homeodomain_3	7	1	+	8.420043757940196	1.5516011963436003	GTCATAAAA
chr8	82359159	82359160	chr8:82359160:T:C	rs16910284	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	83318867	83318868	chr8:83318868:G:C	rs1982687	G	C	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	83919562	83919563	chr8:83919563:C:G	rs1442031	C	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr8	85273872	85273873	chr8:85273873:G:A	rs72682919	G	A	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr8	85849513	85849514	chr8:85849514:C:T	rs1905635	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	7.299208998835316	GTTGTAAAA
chr8	86295840	86295841	chr8:86295841:G:A	rs1595207	G	A	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr8	86343582	86343583	chr8:86343583:T:C	rs13262672	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	86355704	86355705	chr8:86355705:T:A	rs10504823	T	A	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr8	87418750	87418751	chr8:87418751:G:A	rs727564	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr8	88276643	88276644	chr8:88276644:G:A	rs190218883	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr8	89802985	89802986	chr8:89802986:T:A	rs3886444	T	A	A	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr8	89802989	89802990	chr8:89802990:T:A	rs11776336	T	A	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr8	90006278	90006279	chr8:90006279:T:A	rs16902273	T	A	T	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr8	90896711	90896712	chr8:90896712:A:G	rs2631012	A	G	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr8	91205339	91205340	chr8:91205340:C:T	rs73305604	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr8	91205363	91205364	chr8:91205364:G:A	rs112708248	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr8	92089763	92089764	chr8:92089764:T:C	rs7003305	T	C	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr8	93245165	93245166	chr8:93245166:T:G	rs203132	T	G	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr8	93365283	93365284	chr8:93365284:C:A	rs79162539	C	A	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	93670513	93670514	chr8:93670514:A:C	rs75254117	A	C	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	7.202667727093368	GTCATAAAA
chr8	93827905	93827906	chr8:93827906:A:G	rs7839522	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr8	94054172	94054173	chr8:94054173:A:G	rs4735267	A	G	A	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr8	94234474	94234475	chr8:94234475:T:C	rs2613210	T	C	C	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr8	94234479	94234480	chr8:94234480:G:A	rs569099091	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr8	94234506	94234507	chr8:94234507:C:T	rs2613209	C	T	T	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr8	94823802	94823803	chr8:94823803:C:G	rs367969867	C	G	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr8	94965892	94965893	chr8:94965893:C:G	rs112076731	C	G	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr8	95085478	95085479	chr8:95085479:A:G	rs2119588	A	G	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr8	95485847	95485848	chr8:95485848:C:T	rs16917761	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.911344677288588	7.026203907121121	GTTGTAAAA
chr8	95493746	95493747	chr8:95493747:G:A	rs7842490	G	A	g	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr8	95925539	95925540	chr8:95925540:A:G	rs9297261	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr8	96338463	96338464	chr8:96338464:C:T	rs114575735	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr8	96351951	96351952	chr8:96351952:G:A	rs34701295	G	A	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr8	96620014	96620015	chr8:96620015:G:T	rs144500822	G	T	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr8	96626593	96626594	chr8:96626594:C:T	rs7003530	C	T	T	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr8	96736483	96736484	chr8:96736484:A:G	rs116956073	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr8	97582758	97582759	chr8:97582759:C:A	rs928830210	C	A	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr8	97582759	97582760	chr8:97582760:G:A	rs938729396	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr8	97870776	97870777	chr8:97870777:C:A	rs10094310	C	A	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr8	97929293	97929294	chr8:97929294:T:A	chr8:97929294:T:A	T	A	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr8	97991093	97991094	chr8:97991094:G:C	rs184964070	G	C	G	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr8	98004886	98004887	chr8:98004887:G:A	rs13270713	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	98557872	98557873	chr8:98557873:C:T	rs186695708	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr8	99323981	99323982	chr8:99323982:G:A	rs147238167	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	99860333	99860334	chr8:99860334:G:C	rs6468699	G	C	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr8	100040633	100040634	chr8:100040634:C:T	rs1314164952	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	100307767	100307768	chr8:100307768:C:T	rs1788167	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr8	100491407	100491408	chr8:100491408:G:A	rs58901495	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr8	100509819	100509820	chr8:100509820:A:G	rs181529321	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	100719968	100719969	chr8:100719969:G:A	rs56400641	G	A	G	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr8	100720165	100720166	chr8:100720166:A:G	rs59386530	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr8	100865962	100865963	chr8:100865963:C:T	rs16898832	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	6.906634116835357	6.021493346667889	GCCGTAAAC
chr8	101003190	101003191	chr8:101003191:A:G	rs4734505	A	G	a	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr8	101402560	101402561	chr8:101402561:C:T	rs899296	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	9.305184528107661	8.69304884965439	GTCGTAAAA
chr8	102564795	102564796	chr8:102564796:C:G	rs2436888	C	G	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr8	102698806	102698807	chr8:102698807:T:C	rs148597319	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr8	102956556	102956557	chr8:102956557:G:C	rs2668878	G	C	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr8	103343877	103343878	chr8:103343878:T:G	rs144278485	T	G	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr8	103343886	103343887	chr8:103343887:A:G	rs827578	A	G	G	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr8	104389918	104389919	chr8:104389919:T:G	rs1317380	T	G	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr8	104453738	104453739	chr8:104453739:A:G	rs527887994	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	104975002	104975003	chr8:104975003:A:G	rs4358773	A	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr8	105906185	105906186	chr8:105906186:G:A	rs763325588	G	A	G	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr8	106058845	106058846	chr8:106058846:C:T	rs9297377	C	T	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr8	106828952	106828953	chr8:106828953:C:T	rs73702433	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	106828976	106828977	chr8:106828977:G:T	rs16875168	G	T	G	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr8	106828986	106828987	chr8:106828987:G:A	rs73702435	G	A	g	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr8	107085363	107085364	chr8:107085364:A:C	rs79682581	A	C	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr8	107634739	107634740	chr8:107634740:C:T	rs412080	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr8	107673651	107673652	chr8:107673652:A:G	rs6995417	A	G	G	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr8	107704346	107704347	chr8:107704347:C:G	rs6996552	C	G	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr8	108858366	108858367	chr8:108858367:A:T	chr8:108858367:A:T	A	T	A	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr8	108874182	108874183	chr8:108874183:A:G	rs4236794	A	G	G	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr8	109348298	109348299	chr8:109348299:A:G	rs2980585	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	7.994948769610968	6.491880116855494	CTCATAAAA
chr8	109593591	109593592	chr8:109593592:T:C	rs73317056	T	C	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.911344677288588	6.73017029686311	GTTGTAAAA
chr8	110300836	110300837	chr8:110300837:T:C	rs78241959	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr8	111334931	111334932	chr8:111334932:G:A	rs143622866	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	113403904	113403905	chr8:113403905:C:T	rs182839020	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr8	114387022	114387023	chr8:114387023:G:A	rs290619	G	A	A	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr8	114574611	114574612	chr8:114574612:T:C	rs7837028	T	C	c	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr8	115037587	115037588	chr8:115037588:G:A	rs181624901	G	A	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr8	115814752	115814753	chr8:115814753:A:G	rs74363401	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr8	116047530	116047531	chr8:116047531:A:G	rs6991315	A	G	A	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	116116520	116116521	chr8:116116521:G:A	rs10100863	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr8	117034114	117034115	chr8:117034115:G:A	rs78955840	G	A	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr8	117240204	117240205	chr8:117240205:G:T	rs1793732	G	T	T	Hoxd9.mouse_homeodomain_3	2	1	-	8.014132140725302	6.252478753884927	GTCGTAAAT
chr8	117715705	117715706	chr8:117715706:G:A	rs17753630	G	A	g	Hoxd9.mouse_homeodomain_3	3	1	+	8.124010147682185	7.238869377514717	GCCGTAAAA
chr8	117758835	117758836	chr8:117758836:A:G	rs12681948	A	G	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr8	118414718	118414719	chr8:118414719:C:T	rs4876830	C	T	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr8	118711549	118711550	chr8:118711550:A:C	rs13253066	A	C	A	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	4.829041988575794	CTCATAAAA
chr8	118822827	118822828	chr8:118822828:G:T	rs540193673	G	T	G	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	118868861	118868862	chr8:118868862:A:G	rs3134091	A	G	G	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr8	118929590	118929591	chr8:118929591:A:C	rs3134048	A	C	a	Hoxd9.mouse_homeodomain_3	6	1	+	8.232433356227913	4.52750429111917	GTCGTTAAA
chr8	119373211	119373212	chr8:119373212:A:G	rs2470040	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.994948769610968	1.1265062080143724	CTCATAAAA
chr8	119426300	119426301	chr8:119426301:T:C	rs16892553	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr8	119437057	119437058	chr8:119437058:G:C	rs11776544	G	C	C	Hoxd9.mouse_homeodomain_3	2	1	-	8.232433356227913	1.6722658633237546	GTCGTTAAA
chr8	119667017	119667018	chr8:119667018:C:T	rs10505371	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr8	119689612	119689613	chr8:119689613:A:G	rs6986529	A	G	A	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr8	119759622	119759623	chr8:119759623:G:A	rs7011974	G	A	A	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr8	120859747	120859748	chr8:120859748:G:T	rs143071248	G	T	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr8	121120253	121120254	chr8:121120254:G:A	rs76565944	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr8	122324957	122324958	chr8:122324958:C:T	rs1955047	C	T	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.698915159352956	6.813774389185489	CCCGTAAAA
chr8	122988433	122988434	chr8:122988434:C:G	rs10098590	C	G	G	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr8	123461653	123461654	chr8:123461654:T:C	rs3901852	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr8	123725652	123725653	chr8:123725653:A:G	rs2060111	A	G	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.420043757940196	9.305184528107661	GTCATAAAA
chr8	123908180	123908181	chr8:123908181:T:G	rs13273203	T	G	G	Hoxd9.mouse_homeodomain_3	27	0	+	0	0	.
chr8	124138680	124138681	chr8:124138681:G:T	rs4431576	G	T	T	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr8	124308790	124308791	chr8:124308791:C:T	rs73332131	C	T	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr8	124593013	124593014	chr8:124593014:T:C	rs983455416	T	C	T	Hoxd9.mouse_homeodomain_3	3	1	-	8.420043757940196	9.305184528107661	GTCATAAAA
chr8	124593036	124593037	chr8:124593037:A:C	chr8:124593037:A:C	A	C	A	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr8	124795981	124795982	chr8:124795982:C:A	rs10956212	C	A	C	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr8	125070574	125070575	chr8:125070575:A:G	rs78089490	A	G	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr8	125212274	125212275	chr8:125212275:G:A	rs4871574	G	A	A	Hoxd9.mouse_homeodomain_3	-10	0	-	0	0	.
chr8	125291771	125291772	chr8:125291772:G:C	rs7008046	G	C	C	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	4.507431515880895	CTCGTAAAC
chr8	125419742	125419743	chr8:125419743:T:C	rs4559257	T	C	c	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr8	126327683	126327684	chr8:126327684:A:C	rs2467618	A	C	C	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	5.8130632233164405	CTCATAAAA
chr8	126412901	126412902	chr8:126412902:G:A	rs4871704	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr8	126669332	126669333	chr8:126669333:C:T	rs2891842	C	T	T	Hoxd9.mouse_homeodomain_3	2	1	+	7.994948769610968	6.601108918791893	CTCATAAAA
chr8	127169561	127169562	chr8:127169562:C:T	rs13266271	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.69304884965439	7.807908079486923	ATCGTAAAA
chr8	127305339	127305340	chr8:127305340:A:T	rs7006593	A	T	T	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr8	127826368	127826369	chr8:127826369:T:C	rs13272369	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	127975220	127975221	chr8:127975221:T:A	rs6986352	T	A	A	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr8	128318895	128318896	chr8:128318896:G:C	rs4415277	G	C	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr8	128524968	128524969	chr8:128524969:T:C	rs118080959	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr8	128537794	128537795	chr8:128537795:G:A	rs10112057	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr8	129292929	129292930	chr8:129292930:G:A	rs115025255	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr8	129480901	129480902	chr8:129480902:T:C	rs7000768	T	C	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr8	129840097	129840098	chr8:129840098:T:C	rs113439969	T	C	T	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr8	130888873	130888874	chr8:130888874:T:C	rs7819655	T	C	T	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr8	131032138	131032139	chr8:131032139:G:A	rs884423	G	A	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr8	132651851	132651852	chr8:132651852:A:G	rs146418312	A	G	A	Hoxd9.mouse_homeodomain_3	8	1	+	8.124010147682185	6.620941494926711	GCCGTAAAA
chr8	132929964	132929965	chr8:132929965:G:A	rs2687817	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr8	133070904	133070905	chr8:133070905:C:T	rs7002393	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	133529379	133529380	chr8:133529380:G:A	rs16904938	G	A	A	Hoxd9.mouse_homeodomain_3	-13	0	+	0	0	.
chr8	134616896	134616897	chr8:134616897:A:T	rs11166625	A	T	A	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr8	134641588	134641589	chr8:134641589:G:T	rs6577717	G	T	T	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr8	134830994	134830995	chr8:134830995:C:G	rs758954484	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.589037152396075	1.0288696594919167	CTCGTAAAT
chr8	134833049	134833050	chr8:134833050:C:T	rs192278186	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr8	134989979	134989980	chr8:134989980:T:C	rs73373768	T	C	C	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.491880116855494	CTCATAAAA
chr8	135228730	135228731	chr8:135228731:G:C	rs10097066	G	C	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr8	135632478	135632479	chr8:135632479:C:T	rs7014547	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr8	135988040	135988041	chr8:135988041:C:A	rs149518251	C	A	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr8	136413339	136413340	chr8:136413340:T:C	rs140193727	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr8	137591273	137591274	chr8:137591274:T:C	rs4909676	T	C	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr8	137761772	137761773	chr8:137761773:T:G	rs9324456	T	G	T	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr8	138097433	138097434	chr8:138097434:T:C	rs10091764	T	C	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr8	138097438	138097439	chr8:138097439:C:T	rs10102373	C	T	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr8	139223722	139223723	chr8:139223723:C:T	rs954621612	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	139226162	139226163	chr8:139226163:G:C	rs13273728	G	C	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr8	140013835	140013836	chr8:140013836:T:C	rs148909709	T	C	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr8	140172622	140172623	chr8:140172623:G:A	rs9694884	G	A	A	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr8	140567310	140567311	chr8:140567311:C:T	rs35840830	C	T	C	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr8	140594872	140594873	chr8:140594873:C:T	rs145692360	C	T	C	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr8	140868314	140868315	chr8:140868315:T:C	rs9324536	T	C	T	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	140938406	140938407	chr8:140938407:C:T	rs66878551	C	T	C	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr8	141442902	141442903	chr8:141442903:A:G	rs6578184	A	G	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr8	141764185	141764186	chr8:141764186:A:G	rs10875474	A	G	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr8	141906192	141906193	chr8:141906193:T:C	rs75210113	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr8	141978993	141978994	chr8:141978994:G:T	rs59165388	G	T	T	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	5.976904395066784	ATCGTAAAA
chr8	142030193	142030194	chr8:142030194:G:A	rs75739890	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr8	142699033	142699034	chr8:142699034:G:T	rs1836632	G	T	G	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr8	142983464	142983465	chr8:142983465:C:T	rs61276460	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr8	143077441	143077442	chr8:143077442:G:A	rs936581633	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr8	143198303	143198304	chr8:143198304:G:C	rs56377218	G	C	C	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr8	143290360	143290361	chr8:143290361:A:T	rs13282135	A	T	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr8	143516247	143516248	chr8:143516248:A:C	rs115061386	A	C	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr9	286490	286491	chr9:286491:G:A	rs3209441	G	A	G	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr9	564385	564386	chr9:564386:A:G	rs554320342	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr9	613772	613773	chr9:613773:C:T	rs7028415	C	T	T	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr9	613795	613796	chr9:613796:G:A	rs187388689	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr9	1049913	1049914	chr9:1049914:C:T	rs139444500	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr9	1429659	1429660	chr9:1429660:T:G	rs10961423	T	G	T	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr9	1604961	1604962	chr9:1604962:C:T	rs702163	C	T	T	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr9	2048180	2048181	chr9:2048181:T:C	rs73638368	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr9	2570752	2570753	chr9:2570753:C:T	rs140191306	C	T	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr9	2570767	2570768	chr9:2570768:A:G	rs1512714	A	G	G	Hoxd9.mouse_homeodomain_3	13	0	-	0	0	.
chr9	2570795	2570796	chr9:2570796:A:G	rs75958613	A	G	A	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr9	2603041	2603042	chr9:2603042:G:C	rs116543730	G	C	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr9	3696510	3696511	chr9:3696511:C:G	rs10973114	C	G	c	Hoxd9.mouse_homeodomain_3	3	1	-	8.014132140725302	4.858850147674592	GTCGTAAAT
chr9	3760593	3760594	chr9:3760594:T:C	rs2026927	T	C	.	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr9	4301391	4301392	chr9:4301392:A:G	rs4741946	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr9	4375686	4375687	chr9:4375687:C:T	rs73388187	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr9	4588576	4588577	chr9:4588577:C:T	rs184204	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr9	4759388	4759389	chr9:4759389:A:G	rs187109705	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.420043757940196	7.238869377514717	GTCATAAAA
chr9	4788216	4788217	chr9:4788217:G:A	rs34059845	G	A	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr9	5364477	5364478	chr9:5364478:A:G	rs7860592	A	G	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr9	5686875	5686876	chr9:5686876:G:C	chr9:5686876:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr9	5815646	5815647	chr9:5815647:T:C	rs972603	T	C	T	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr9	5843825	5843826	chr9:5843826:C:G	rs148444390	C	G	C	Hoxd9.mouse_homeodomain_3	9	0	+	0	0	.
chr9	5939709	5939710	chr9:5939710:G:A	rs10815313	G	A	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr9	6192795	6192796	chr9:6192796:T:C	rs2095044	T	C	C	Hoxd9.mouse_homeodomain_3	6	1	-	7.911344677288588	3.9333647029703527	GTTGTAAAA
chr9	6791732	6791733	chr9:6791733:A:T	rs10283920	A	T	A	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr9	7032643	7032644	chr9:7032644:G:T	rs12554351	G	T	G	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr9	7535871	7535872	chr9:7535872:C:T	rs10815631	C	T	T	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr9	7596926	7596927	chr9:7596927:C:T	rs10118443	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr9	7857878	7857879	chr9:7857879:A:C	rs10976628	A	C	A	Hoxd9.mouse_homeodomain_3	3	1	+	7.994948769610968	5.724807546727723	CTCATAAAA
chr9	7901003	7901004	chr9:7901004:A:G	rs1038929735	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr9	7995141	7995142	chr9:7995142:A:C	rs10976711	A	C	C	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr9	7995151	7995152	chr9:7995152:T:A	rs10976712	T	A	T	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr9	8381697	8381698	chr9:8381698:G:A	rs10815842	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr9	8381807	8381808	chr9:8381808:T:C	rs186770200	T	C	T	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr9	9102676	9102677	chr9:9102677:A:G	rs7020063	A	G	A	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr9	9963942	9963943	chr9:9963943:A:C	rs10491907	A	C	A	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr9	10621190	10621191	chr9:10621191:G:A	rs10809138	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr9	10621199	10621200	chr9:10621200:C:T	rs10809139	C	T	C	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr9	10621215	10621216	chr9:10621216:C:T	rs78966756	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr9	11097216	11097217	chr9:11097217:C:G	rs10756185	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr9	11197937	11197938	chr9:11197938:C:A	rs12376574	C	A	C	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr9	11471765	11471766	chr9:11471766:C:T	rs10756254	C	T	T	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr9	12588040	12588041	chr9:12588041:G:A	rs10960711	G	A	a	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr9	13210299	13210300	chr9:13210300:C:G	rs10809916	C	G	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr9	13377461	13377462	chr9:13377462:T:A	rs7849805	T	A	T	Hoxd9.mouse_homeodomain_3	8	1	-	7.994948769610968	6.703896382228609	CTCATAAAA
chr9	14188857	14188858	chr9:14188858:T:C	rs2382450	T	C	T	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr9	14204747	14204748	chr9:14204748:G:C	rs10756539	G	C	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr9	15390259	15390260	chr9:15390260:T:A	rs2490859	T	A	A	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr9	15390276	15390277	chr9:15390277:T:G	rs13298276	T	G	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr9	16060433	16060434	chr9:16060434:A:C	rs2987094	A	C	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr9	16060463	16060464	chr9:16060464:G:T	rs62550912	G	T	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr9	16987465	16987466	chr9:16987466:G:A	rs13300416	G	A	G	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr9	17116150	17116151	chr9:17116151:C:T	rs78090434	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr9	17617937	17617938	chr9:17617938:G:T	rs4961578	G	T	T	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr9	17871583	17871584	chr9:17871584:C:T	rs12002537	C	T	C	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr9	18545466	18545467	chr9:18545467:T:A	rs7027894	T	A	T	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr9	18684832	18684833	chr9:18684833:T:G	rs2507121	T	G	T	Hoxd9.mouse_homeodomain_3	28	0	+	0	0	.
chr9	18747210	18747211	chr9:18747211:G:T	rs35200150	G	T	T	Hoxd9.mouse_homeodomain_3	2	1	-	7.662713508931605	5.901060122091229	CTCGTAAAC
chr9	18754183	18754184	chr9:18754184:T:A	rs10738516	T	A	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr9	18754212	18754213	chr9:18754213:T:C	rs10733356	T	C	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr9	18770944	18770945	chr9:18770945:C:T	rs16937047	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr9	18855636	18855637	chr9:18855637:A:C	rs145655468	A	C	A	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr9	19934208	19934209	chr9:19934209:T:C	rs7043847	T	C	T	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr9	20908374	20908375	chr9:20908375:A:G	rs4288451	A	G	a	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr9	21118747	21118748	chr9:21118748:A:G	rs2800316	A	G	G	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr9	21568672	21568673	chr9:21568673:A:G	rs72703472	A	G	A	Hoxd9.mouse_homeodomain_3	27	0	-	0	0	.
chr9	21616226	21616227	chr9:21616227:G:A	chr9:21616227:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr9	21790669	21790670	chr9:21790670:C:G	rs1542075	C	G	G	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr9	21797186	21797187	chr9:21797187:G:A	rs10965139	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.124010147682185	6.73017029686311	GCCGTAAAA
chr9	21830750	21830751	chr9:21830751:A:G	rs188554208	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr9	22215660	22215661	chr9:22215661:C:T	rs10965296	C	T	C	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr9	23663567	23663568	chr9:23663568:C:G	rs1329034	C	G	G	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr9	24382471	24382472	chr9:24382472:A:G	rs529428624	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.994948769610968	6.813774389185489	CTCATAAAA
chr9	24969208	24969209	chr9:24969209:G:A	rs78046511	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr9	25274256	25274257	chr9:25274257:A:G	rs10511752	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr9	25567131	25567132	chr9:25567132:G:A	rs2498717	G	A	G	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr9	29028381	29028382	chr9:29028382:T:C	rs10491640	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr9	29326138	29326139	chr9:29326139:C:A	rs36040401	C	A	C	Hoxd9.mouse_homeodomain_3	0	1	-	7.911344677288588	3.0900528109233516	GTTGTAAAA
chr9	29349260	29349261	chr9:29349261:G:C	rs7046655	G	C	G	Hoxd9.mouse_homeodomain_3	0	1	-	7.994948769610968	8.420043757940196	CTCATAAAA
chr9	31211160	31211161	chr9:31211161:T:C	rs1333610	T	C	T	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr9	31908424	31908425	chr9:31908425:A:G	chr9:31908425:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr9	32422403	32422404	chr9:32422404:A:T	rs10813813	A	T	A	Hoxd9.mouse_homeodomain_3	19	0	-	0	0	.
chr9	32470484	32470485	chr9:32470485:C:A	rs73479419	C	A	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr9	32490676	32490677	chr9:32490677:G:T	rs639949	G	T	T	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr9	32928306	32928307	chr9:32928307:C:G	rs1238292653	C	G	C	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr9	33470409	33470410	chr9:33470410:G:A	rs10971521	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	8.880089539778433	7.48624968895936	CTCGTAAAA
chr9	33543739	33543740	chr9:33543740:G:A	rs144877482	G	A	G	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr9	33703776	33703777	chr9:33703777:T:C	rs1810372	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr9	35116800	35116801	chr9:35116801:T:G	chr9:35116801:T:G	T	G	t	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr9	35116807	35116808	chr9:35116808:G:T	rs73645451	G	T	g	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr9	35915059	35915060	chr9:35915060:C:T	rs67227401	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr9	37575957	37575958	chr9:37575958:G:A	rs72739690	G	A	G	Hoxd9.mouse_homeodomain_3	1	1	-	7.698915159352956	8.880089539778433	CCCGTAAAA
chr9	38034183	38034184	chr9:38034184:T:A	rs4878742	T	A	T	Hoxd9.mouse_homeodomain_3	1	1	+	7.994948769610968	5.442013759327832	CTCATAAAA
chr9	38202543	38202544	chr9:38202544:G:A	rs1867178	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.589037152396075	6.195197301577001	CTCGTAAAT
chr9	38294778	38294779	chr9:38294779:G:A	rs190390797	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr9	38431240	38431241	chr9:38431241:A:G	rs72707481	A	G	A	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr9	39552341	39552342	chr9:39552342:T:G	rs429163	T	G	.	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr9	41111561	41111562	chr9:41111562:C:G	rs62551608	C	G	.	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr9	42338520	42338521	chr9:42338521:A:T	rs71236554	A	T	-	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr9	64110774	64110775	chr9:64110775:G:A	rs28461412	G	A	.	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr9	65232505	65232506	chr9:65232506:C:T	rs4928923	C	T	.	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr9	66775062	66775063	chr9:66775063:A:G	rs3007580	A	G	A	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr9	68779845	68779846	chr9:68779846:G:A	rs58984094	G	A	G	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr9	68844660	68844661	chr9:68844661:A:G	rs9776840	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr9	69120876	69120877	chr9:69120877:A:G	chr9:69120877:A:G	A	G	A	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr9	69120900	69120901	chr9:69120901:A:T	rs1345055722	A	T	A	Hoxd9.mouse_homeodomain_3	8	1	+	9.305184528107661	8.014132140725302	GTCGTAAAA
chr9	69370619	69370620	chr9:69370620:T:C	rs144568982	T	C	T	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr9	69821532	69821533	chr9:69821533:C:T	rs118069611	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr9	69891427	69891428	chr9:69891428:G:A	rs4744951	G	A	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr9	70258238	70258239	chr9:70258239:T:C	rs192845444	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.8073383678986845	3.8293583935804496	CTCGTTAAA
chr9	70558265	70558266	chr9:70558266:A:C	rs4517192	A	C	C	Hoxd9.mouse_homeodomain_3	6	1	+	8.420043757940196	4.715114692831453	GTCATAAAA
chr9	70979940	70979941	chr9:70979941:C:T	rs3010439	C	T	C	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr9	71194525	71194526	chr9:71194526:G:A	rs1394305	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr9	71246039	71246040	chr9:71246040:C:A	rs7039499	C	A	A	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr9	71246056	71246057	chr9:71246057:A:G	rs7024634	A	G	A	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr9	72354159	72354160	chr9:72354160:G:A	rs3398	G	A	A	Hoxd9.mouse_homeodomain_3	0	1	+	8.420043757940196	7.807908079486923	GTCATAAAA
chr9	72635302	72635303	chr9:72635303:T:C	rs34017004	T	C	T	Hoxd9.mouse_homeodomain_3	6	1	-	7.994948769610968	4.016968795292732	CTCATAAAA
chr9	72980664	72980665	chr9:72980665:T:A	rs4745207	T	A	T	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr9	73137690	73137691	chr9:73137691:C:T	rs12353151	C	T	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr9	73137728	73137729	chr9:73137729:T:G	rs17058511	T	G	T	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr9	73548468	73548469	chr9:73548469:A:C	rs388894	A	C	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr9	74857149	74857150	chr9:74857150:G:A	rs12378991	G	A	G	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr9	75091864	75091865	chr9:75091865:A:G	rs17625101	A	G	A	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr9	75904269	75904270	chr9:75904270:C:A	rs940791353	C	A	C	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr9	75904288	75904289	chr9:75904289:A:C	rs139523119	A	C	A	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr9	76105906	76105907	chr9:76105907:A:G	rs7045536	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr9	76699374	76699375	chr9:76699375:G:A	rs594586	G	A	G	Hoxd9.mouse_homeodomain_3	0	1	+	7.911344677288588	7.299208998835316	GTTGTAAAA
chr9	77463367	77463368	chr9:77463368:C:T	rs144320324	C	T	C	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr9	77515144	77515145	chr9:77515145:C:T	rs12005601	C	T	T	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr9	77524642	77524643	chr9:77524643:T:C	rs10781442	T	C	C	Hoxd9.mouse_homeodomain_3	26	0	-	0	0	.
chr9	77916551	77916552	chr9:77916552:C:G	rs546378667	C	G	C	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr9	78072054	78072055	chr9:78072055:A:G	rs10781487	A	G	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr9	78289388	78289389	chr9:78289389:A:G	rs10867174	A	G	A	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr9	78544392	78544393	chr9:78544393:C:T	rs17726343	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	-	0	0	.
chr9	78775078	78775079	chr9:78775079:G:A	rs7861405	G	A	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr9	80732295	80732296	chr9:80732296:A:T	rs74650450	A	T	A	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr9	82526948	82526949	chr9:82526949:G:A	rs7873810	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr9	82544394	82544395	chr9:82544395:A:C	rs62576849	A	C	A	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr9	82808370	82808371	chr9:82808371:T:A	rs4877236	T	A	A	Hoxd9.mouse_homeodomain_3	7	1	-	7.911344677288588	1.0429021156919922	GTTGTAAAA
chr9	83471075	83471076	chr9:83471076:T:C	rs2375929	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr9	83827500	83827501	chr9:83827501:C:T	rs186683209	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr9	85262825	85262826	chr9:85262826:C:G	rs11140912	C	G	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr9	85466938	85466939	chr9:85466939:G:A	rs10868305	G	A	-	Hoxd9.mouse_homeodomain_3	-18	0	+	0	0	.
chr9	85960774	85960775	chr9:85960775:C:T	rs780292453	C	T	c	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr9	86047217	86047218	chr9:86047218:C:T	rs10124002	C	T	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr9	86732413	86732414	chr9:86732414:C:T	rs7864508	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	+	0	0	.
chr9	86735433	86735434	chr9:86735434:T:C	rs115795204	T	C	T	Hoxd9.mouse_homeodomain_3	26	0	+	0	0	.
chr9	86795759	86795760	chr9:86795760:G:T	rs10122984	G	T	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr9	86795774	86795775	chr9:86795775:G:T	rs10122988	G	T	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	6.163945085190828	CTCGTAAAA
chr9	86975696	86975697	chr9:86975697:A:G	rs12553539	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr9	87137596	87137597	chr9:87137597:A:G	rs277740	A	G	a	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr9	87467262	87467263	chr9:87467263:A:C	rs73486269	A	C	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr9	87501989	87501990	chr9:87501990:A:G	rs141581865	A	G	A	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr9	87672271	87672272	chr9:87672272:T:C	rs729958	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr9	87712597	87712598	chr9:87712598:A:G	rs2149381	A	G	A	Hoxd9.mouse_homeodomain_3	1	1	-	7.911344677288588	6.73017029686311	GTTGTAAAA
chr9	87874314	87874315	chr9:87874315:A:T	rs7467356	A	T	-	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr9	88035884	88035885	chr9:88035885:C:G	rs10125295	C	G	.	Hoxd9.mouse_homeodomain_3	2	1	+	8.69304884965439	2.1328813567502314	ATCGTAAAA
chr9	88198288	88198289	chr9:88198289:G:A	rs7028892	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	9.305184528107661	7.911344677288588	GTCGTAAAA
chr9	89448622	89448623	chr9:89448623:G:A	rs533365900	G	A	G	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr9	89479796	89479797	chr9:89479797:G:A	rs112060251	G	A	g	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr9	89528463	89528464	chr9:89528464:G:A	rs55775217	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr9	89528466	89528467	chr9:89528467:G:A	rs7848113	G	A	G	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr9	89766952	89766953	chr9:89766953:C:T	rs9330441	C	T	T	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr9	89793359	89793360	chr9:89793360:C:T	rs9696730	C	T	C	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr9	90038945	90038946	chr9:90038946:C:T	rs77086045	C	T	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr9	90311945	90311946	chr9:90311946:A:G	rs1777011	A	G	G	Hoxd9.mouse_homeodomain_3	7	1	+	7.176266619256224	0.3078240576596286	GGCGTAAAA
chr9	90586245	90586246	chr9:90586246:C:T	rs73503379	C	T	C	Hoxd9.mouse_homeodomain_3	16	0	+	0	0	.
chr9	90770011	90770012	chr9:90770012:C:T	rs3904534	C	T	.	Hoxd9.mouse_homeodomain_3	-5	0	+	0	0	.
chr9	91152663	91152664	chr9:91152664:C:T	rs112503815	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr9	91208082	91208083	chr9:91208083:C:T	rs16907273	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr9	91361880	91361881	chr9:91361881:G:C	chr9:91361881:G:C	G	C	G	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr9	91664807	91664808	chr9:91664808:C:G	rs9409639	C	G	c	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr9	91803006	91803007	chr9:91803007:C:T	rs4743854	C	T	C	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr9	91903762	91903763	chr9:91903763:C:T	rs59917975	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr9	91992723	91992724	chr9:91992724:G:C	rs7856181	G	C	G	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr9	92611868	92611869	chr9:92611869:T:C	rs113154830	T	C	T	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr9	92929039	92929040	chr9:92929040:A:G	rs6479440	A	G	G	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr9	92984177	92984178	chr9:92984178:C:T	rs10739940	C	T	C	Hoxd9.mouse_homeodomain_3	24	0	-	0	0	.
chr9	92984180	92984181	chr9:92984181:A:C	rs115924638	A	C	A	Hoxd9.mouse_homeodomain_3	21	0	-	0	0	.
chr9	93467374	93467375	chr9:93467375:C:T	rs574179771	C	T	C	Hoxd9.mouse_homeodomain_3	18	0	-	0	0	.
chr9	93467389	93467390	chr9:93467390:C:T	rs57303681	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.8073383678986845	6.922197597731219	CTCGTTAAA
chr9	93468205	93468206	chr9:93468206:C:G	rs531975519	C	G	C	Hoxd9.mouse_homeodomain_3	-4	0	-	0	0	.
chr9	93517540	93517541	chr9:93517541:G:A	rs16909243	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.911344677288588	7.026203907121121	GTTGTAAAA
chr9	93631644	93631645	chr9:93631645:C:T	rs2001995	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.802115875352188	6.916975105184722	GTCGTAAAG
chr9	94188931	94188932	chr9:94188932:T:G	rs10821315	T	G	T	Hoxd9.mouse_homeodomain_3	13	0	+	0	0	.
chr9	95239809	95239810	chr9:95239810:T:C	rs4647441	T	C	T	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr9	95570541	95570542	chr9:95570542:G:T	rs146627533	G	T	G	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr9	95764389	95764390	chr9:95764390:G:A	rs10117423	G	A	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr9	96163690	96163691	chr9:96163691:A:G	rs7036254	A	G	A	Hoxd9.mouse_homeodomain_3	9	0	-	0	0	.
chr9	96281562	96281563	chr9:96281563:C:T	rs280665	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.37702088702296	5.983181036203886	CTCGTAAAG
chr9	96857209	96857210	chr9:96857210:G:A	rs116592725	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr9	97543984	97543985	chr9:97543985:G:T	rs10817737	G	T	G	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr9	97729795	97729796	chr9:97729796:A:G	rs2808695	A	G	G	Hoxd9.mouse_homeodomain_3	-5	0	-	0	0	.
chr9	98190861	98190862	chr9:98190862:C:T	rs3824454	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	8.880089539778433	7.994948769610968	CTCGTAAAA
chr9	98360846	98360847	chr9:98360847:T:C	rs628997	T	C	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr9	98862440	98862441	chr9:98862441:A:G	rs149982561	A	G	A	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr9	98917116	98917117	chr9:98917117:G:A	rs16918058	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.880089539778433	7.994948769610968	CTCGTAAAA
chr9	99056433	99056434	chr9:99056434:T:C	rs11788317	T	C	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr9	99269436	99269437	chr9:99269437:A:T	rs76460579	A	T	A	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr9	100063784	100063785	chr9:100063785:C:T	rs10739795	C	T	t	Hoxd9.mouse_homeodomain_3	-18	0	-	0	0	.
chr9	100475299	100475300	chr9:100475300:T:C	rs10989102	T	C	T	Hoxd9.mouse_homeodomain_3	3	1	-	7.994948769610968	8.880089539778433	CTCATAAAA
chr9	101176470	101176471	chr9:101176471:T:C	rs150108653	T	C	T	Hoxd9.mouse_homeodomain_3	25	0	-	0	0	.
chr9	101225421	101225422	chr9:101225422:T:C	chr9:101225422:T:C	T	C	T	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr9	102087310	102087311	chr9:102087311:C:G	rs736549	C	G	C	Hoxd9.mouse_homeodomain_3	2	1	+	9.305184528107661	2.745017035203504	GTCGTAAAA
chr9	104896103	104896104	chr9:104896104:G:A	rs2740491	G	A	A	Hoxd9.mouse_homeodomain_3	3	1	+	8.014132140725302	7.128991370557837	GTCGTAAAT
chr9	105038318	105038319	chr9:105038319:C:A	rs10820764	C	A	C	Hoxd9.mouse_homeodomain_3	-4	0	+	0	0	.
chr9	106293917	106293918	chr9:106293918:C:A	rs35675103	C	A	C	Hoxd9.mouse_homeodomain_3	14	0	+	0	0	.
chr9	107338391	107338392	chr9:107338392:G:A	chr9:107338392:G:A	G	A	G	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr9	108057428	108057429	chr9:108057429:A:G	rs72745924	A	G	A	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr9	108211762	108211763	chr9:108211763:C:G	rs609982	C	G	G	Hoxd9.mouse_homeodomain_3	21	0	+	0	0	.
chr9	108749389	108749390	chr9:108749390:G:A	rs2039810	G	A	G	Hoxd9.mouse_homeodomain_3	-14	0	-	0	0	.
chr9	108783771	108783772	chr9:108783772:T:C	rs62575031	T	C	T	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr9	109166312	109166313	chr9:109166313:A:G	rs2139350	A	G	A	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr9	109462818	109462819	chr9:109462819:T:C	rs13291305	T	C	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr9	109793785	109793786	chr9:109793786:G:T	rs12380786	G	T	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr9	109793798	109793799	chr9:109793799:T:A	rs12376776	T	A	A	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr9	110343778	110343779	chr9:110343779:G:A	rs116352794	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	8.69304884965439	7.807908079486923	ATCGTAAAA
chr9	110581274	110581275	chr9:110581275:C:T	rs4978938	C	T	T	Hoxd9.mouse_homeodomain_3	-16	0	+	0	0	.
chr9	111407849	111407850	chr9:111407850:A:G	rs12350676	A	G	G	Hoxd9.mouse_homeodomain_3	-1	0	-	0	0	.
chr9	111818005	111818006	chr9:111818006:C:T	rs10981088	C	T	c	Hoxd9.mouse_homeodomain_3	-6	0	+	0	0	.
chr9	111838955	111838956	chr9:111838956:C:A	rs10981108	C	A	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr9	112059321	112059322	chr9:112059322:T:C	rs115347696	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	+	0	0	.
chr9	112169466	112169467	chr9:112169467:C:T	rs10981293	C	T	C	Hoxd9.mouse_homeodomain_3	20	0	+	0	0	.
chr9	112176650	112176651	chr9:112176651:G:A	rs10759529	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr9	112331460	112331461	chr9:112331461:A:T	rs141559937	A	T	A	Hoxd9.mouse_homeodomain_3	-2	0	+	0	0	.
chr9	112732176	112732177	chr9:112732177:G:C	rs12006303	G	C	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr9	113269689	113269690	chr9:113269690:C:A	rs12337631	C	A	C	Hoxd9.mouse_homeodomain_3	-9	0	-	0	0	.
chr9	113269697	113269698	chr9:113269698:G:C	rs12337709	G	C	G	Hoxd9.mouse_homeodomain_3	-17	0	-	0	0	.
chr9	113742049	113742050	chr9:113742050:C:G	rs189117433	C	G	C	Hoxd9.mouse_homeodomain_3	17	0	-	0	0	.
chr9	114273667	114273668	chr9:114273668:A:G	rs61013300	A	G	A	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr9	114461081	114461082	chr9:114461082:C:T	rs1324630	C	T	C	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr9	114499509	114499510	chr9:114499510:C:T	rs76268034	C	T	C	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr9	114804732	114804733	chr9:114804733:C:T	rs4979462	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	-	0	0	.
chr9	114957712	114957713	chr9:114957713:A:G	rs72756600	A	G	G	Hoxd9.mouse_homeodomain_3	8	1	+	8.420043757940196	6.916975105184722	GTCATAAAA
chr9	115292377	115292378	chr9:115292378:C:T	rs75459349	C	T	C	Hoxd9.mouse_homeodomain_3	2	1	+	7.662713508931605	6.268873658112532	CTCGTAAAC
chr9	115651205	115651206	chr9:115651206:A:C	rs9650715	A	C	A	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr9	115651235	115651236	chr9:115651236:A:G	rs1989771	A	G	A	Hoxd9.mouse_homeodomain_3	-8	0	-	0	0	.
chr9	115923592	115923593	chr9:115923593:G:A	rs12683184	G	A	G	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr9	116439594	116439595	chr9:116439595:A:G	rs1040850	A	G	A	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr9	116662846	116662847	chr9:116662847:T:G	rs10983297	T	G	T	Hoxd9.mouse_homeodomain_3	16	0	-	0	0	.
chr9	116662848	116662849	chr9:116662849:G:A	rs10983298	G	A	G	Hoxd9.mouse_homeodomain_3	14	0	-	0	0	.
chr9	117268974	117268975	chr9:117268975:G:A	rs7043216	G	A	G	Hoxd9.mouse_homeodomain_3	18	0	+	0	0	.
chr9	118568965	118568966	chr9:118568966:C:T	rs74722302	C	T	C	Hoxd9.mouse_homeodomain_3	0	1	-	8.420043757940196	7.807908079486923	GTCATAAAA
chr9	120186870	120186871	chr9:120186871:C:G	rs10739555	C	G	C	Hoxd9.mouse_homeodomain_3	-9	0	+	0	0	.
chr9	120360347	120360348	chr9:120360348:A:G	rs7045527	A	G	G	Hoxd9.mouse_homeodomain_3	-11	0	-	0	0	.
chr9	121058081	121058082	chr9:121058082:G:A	rs72758197	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.994948769610968	6.601108918791893	CTCATAAAA
chr9	121200579	121200580	chr9:121200580:G:A	rs72760269	G	A	G	Hoxd9.mouse_homeodomain_3	-8	0	+	0	0	.
chr9	121381228	121381229	chr9:121381229:A:G	rs2793266	A	G	G	Hoxd9.mouse_homeodomain_3	10	0	+	0	0	.
chr9	121632241	121632242	chr9:121632242:C:T	rs150872170	C	T	C	Hoxd9.mouse_homeodomain_3	-15	0	+	0	0	.
chr9	122172764	122172765	chr9:122172765:G:A	rs10818642	G	A	G	Hoxd9.mouse_homeodomain_3	17	0	+	0	0	.
chr9	122821875	122821876	chr9:122821876:A:C	rs74694690	A	C	A	Hoxd9.mouse_homeodomain_3	22	0	+	0	0	.
chr9	123333191	123333192	chr9:123333192:C:T	rs530307790	C	T	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr9	124005768	124005769	chr9:124005769:C:T	rs1327291	C	T	T	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr9	124660712	124660713	chr9:124660713:T:A	rs79647419	T	A	T	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr9	125784819	125784820	chr9:125784820:A:C	rs76154303	A	C	A	Hoxd9.mouse_homeodomain_3	1	1	-	8.014132140725302	5.885214231873865	GTCGTAAAT
chr9	126049844	126049845	chr9:126049845:G:A	rs1477150	G	A	G	Hoxd9.mouse_homeodomain_3	-19	0	+	0	0	.
chr9	126150127	126150128	chr9:126150128:T:C	rs10733674	T	C	C	Hoxd9.mouse_homeodomain_3	20	0	-	0	0	.
chr9	126252318	126252319	chr9:126252319:G:A	rs139683981	G	A	G	Hoxd9.mouse_homeodomain_3	10	0	-	0	0	.
chr9	126719554	126719555	chr9:126719555:C:T	rs148427786	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr9	126722856	126722857	chr9:126722857:A:G	rs529575717	A	G	A	Hoxd9.mouse_homeodomain_3	-11	0	+	0	0	.
chr9	126722857	126722858	chr9:126722858:T:C	rs60783537	T	C	C	Hoxd9.mouse_homeodomain_3	-10	0	+	0	0	.
chr9	126722866	126722867	chr9:126722867:C:A	rs879408805	C	A	C	Hoxd9.mouse_homeodomain_3	-1	0	+	0	0	.
chr9	127036755	127036756	chr9:127036756:C:A	rs116109205	C	A	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr9	127815431	127815432	chr9:127815432:C:T	rs887110928	C	T	C	Hoxd9.mouse_homeodomain_3	-16	0	-	0	0	.
chr9	127990751	127990752	chr9:127990752:T:C	rs10987807	T	C	C	Hoxd9.mouse_homeodomain_3	-14	0	+	0	0	.
chr9	128072597	128072598	chr9:128072598:A:G	rs1328180566	A	G	A	Hoxd9.mouse_homeodomain_3	5	1	+	7.994948769610968	1.3794058091671437	CTCATAAAA
chr9	128097052	128097053	chr9:128097053:C:T	rs9695803	C	T	C	Hoxd9.mouse_homeodomain_3	3	1	-	7.37702088702296	6.491880116855494	CTCGTAAAG
chr9	128223245	128223246	chr9:128223246:G:A	rs3003610	G	A	G	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr9	128231117	128231118	chr9:128231118:A:G	rs16930313	A	G	G	Hoxd9.mouse_homeodomain_3	4	1	-	7.994948769610968	4.832374904699987	CTCATAAAA
chr9	128899922	128899923	chr9:128899923:A:T	rs73669992	A	T	A	Hoxd9.mouse_homeodomain_3	-12	0	-	0	0	.
chr9	128928893	128928894	chr9:128928894:G:T	rs7854927	G	T	G	Hoxd9.mouse_homeodomain_3	12	0	-	0	0	.
chr9	128928894	128928895	chr9:128928895:T:A	rs7870141	T	A	T	Hoxd9.mouse_homeodomain_3	11	0	-	0	0	.
chr9	129175741	129175742	chr9:129175742:C:T	rs966764680	C	T	C	Hoxd9.mouse_homeodomain_3	15	0	-	0	0	.
chr9	129459403	129459404	chr9:129459404:G:A	rs575957820	G	A	G	Hoxd9.mouse_homeodomain_3	3	1	+	7.662713508931605	6.77757273876414	CTCGTAAAC
chr9	131244601	131244602	chr9:131244602:C:T	rs554445320	C	T	c	Hoxd9.mouse_homeodomain_3	15	0	+	0	0	.
chr9	131678946	131678947	chr9:131678947:C:T	rs988820082	C	T	C	Hoxd9.mouse_homeodomain_3	-6	0	-	0	0	.
chr9	131739333	131739334	chr9:131739334:A:G	rs117648991	A	G	A	Hoxd9.mouse_homeodomain_3	6	1	+	7.8073383678986845	3.8293583935804496	CTCGTTAAA
chr9	131793805	131793806	chr9:131793806:T:C	rs10793898	T	C	C	Hoxd9.mouse_homeodomain_3	28	0	-	0	0	.
chr9	132126315	132126316	chr9:132126316:C:T	rs11243634	C	T	C	Hoxd9.mouse_homeodomain_3	-3	0	-	0	0	.
chr9	132262870	132262871	chr9:132262871:C:T	rs7025	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr9	133097893	133097894	chr9:133097894:G:A	rs117242941	G	A	G	Hoxd9.mouse_homeodomain_3	-12	0	+	0	0	.
chr9	133907655	133907656	chr9:133907656:C:T	rs116010192	C	T	C	Hoxd9.mouse_homeodomain_3	-17	0	+	0	0	.
chr9	133907684	133907685	chr9:133907685:T:C	rs143467693	T	C	T	Hoxd9.mouse_homeodomain_3	12	0	+	0	0	.
chr9	133907695	133907696	chr9:133907696:C:T	rs113519243	C	T	C	Hoxd9.mouse_homeodomain_3	23	0	+	0	0	.
chr9	133907696	133907697	chr9:133907697:G:A	rs147977414	G	A	G	Hoxd9.mouse_homeodomain_3	24	0	+	0	0	.
chr9	134065034	134065035	chr9:134065035:G:A	rs61579331	G	A	G	Hoxd9.mouse_homeodomain_3	23	0	-	0	0	.
chr9	134065035	134065036	chr9:134065036:C:T	chr9:134065036:C:T	C	T	c	Hoxd9.mouse_homeodomain_3	22	0	-	0	0	.
chr9	134065059	134065060	chr9:134065060:A:G	rs113289159	A	G	A	Hoxd9.mouse_homeodomain_3	-2	0	-	0	0	.
chr9	134616597	134616598	chr9:134616598:T:G	rs6537931	T	G	G	Hoxd9.mouse_homeodomain_3	11	0	+	0	0	.
chr9	134812211	134812212	chr9:134812212:T:A	rs10745387	T	A	A	Hoxd9.mouse_homeodomain_3	-20	0	+	0	0	.
chr9	134812235	134812236	chr9:134812236:T:C	rs13293801	T	C	T	Hoxd9.mouse_homeodomain_3	4	1	+	8.014132140725302	4.851558275814322	GTCGTAAAT
chr9	134872044	134872045	chr9:134872045:C:G	rs60093500	C	G	C	Hoxd9.mouse_homeodomain_3	-20	0	-	0	0	.
chr9	135090822	135090823	chr9:135090823:T:C	rs189066403	T	C	T	Hoxd9.mouse_homeodomain_3	-13	0	-	0	0	.
chr9	135146646	135146647	chr9:135146647:T:C	rs58307428	T	C	T	Hoxd9.mouse_homeodomain_3	-7	0	-	0	0	.
chr9	136538615	136538616	chr9:136538616:C:T	rs144605229	C	T	C	Hoxd9.mouse_homeodomain_3	25	0	+	0	0	.
chr9	136687886	136687887	chr9:136687887:T:C	rs7038079	T	C	T	Hoxd9.mouse_homeodomain_3	19	0	+	0	0	.
chr9	137674196	137674197	chr9:137674197:G:A	rs75821310	G	A	G	Hoxd9.mouse_homeodomain_3	2	1	-	7.37702088702296	5.983181036203886	CTCGTAAAG